BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 001179
         (1131 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|359487166|ref|XP_002263835.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 [Vitis
            vinifera]
          Length = 1142

 Score = 1887 bits (4889), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 892/1141 (78%), Positives = 1007/1141 (88%), Gaps = 22/1141 (1%)

Query: 8    DFEPLRELVRHHIESFDYMLDEGLSEMFD-----------------HCRQAKISYTGKLM 50
            D+EPLREL +HHI+SFD++++ GL  +                    CRQAKISY+GKL+
Sbjct: 7    DYEPLRELFQHHIDSFDHLVEFGLETLLMSVKPRSARTMRDALYPFECRQAKISYSGKLL 66

Query: 51   ADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILN 110
            ADV FQY       +RE+FN GQFP+MLK++ CHL+GAD QKLVS KEE++EMGGYFILN
Sbjct: 67   ADVCFQY--GNGVAIREKFNLGQFPIMLKSKLCHLRGADPQKLVSCKEESSEMGGYFILN 124

Query: 111  GLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGS 170
            GLERV R +ILPK+NYPMSMVR+SFRDRREGYTDKAVVIRCVR+DQS+VT+KLYYL NGS
Sbjct: 125  GLERVVRLLILPKRNYPMSMVRNSFRDRREGYTDKAVVIRCVREDQSAVTVKLYYLRNGS 184

Query: 171  VRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVK 230
             RLGFW+QG+EYLLPVG+VLKAL+DT D EI+  LTCCY EKY+  KGAVG+ LV ERVK
Sbjct: 185  ARLGFWIQGREYLLPVGVVLKALIDTTDHEIYESLTCCYSEKYEGGKGAVGTQLVGERVK 244

Query: 231  IILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKF 290
            IIL EV+DLSL TR QCLQHIGEHFQ V+DGL++ESY  VA+ V+R+YIFVHL++N DKF
Sbjct: 245  IILDEVRDLSLFTRHQCLQHIGEHFQLVMDGLENESYSIVADAVLREYIFVHLDNNYDKF 304

Query: 291  NLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDE 350
            NLLIFM+QKLFSL+D TSV DNPD LQNQE+LLPGHLITIYLKEKL++WL K ++L+QDE
Sbjct: 305  NLLIFMVQKLFSLIDQTSVPDNPDVLQNQEVLLPGHLITIYLKEKLQEWLYKARRLLQDE 364

Query: 351  IENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAE 410
            I N  K F+F +LA++KKVM+KNPS+QI  ++E MLKTGRL TQ+GLDLQQRAG TVQAE
Sbjct: 365  I-NKRKNFEFSSLAHVKKVMDKNPSRQISLAVENMLKTGRLVTQSGLDLQQRAGMTVQAE 423

Query: 411  RLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTC 470
            RLNFLRF+S FRAVHRGASFAGLRTTSVRKLLPE+WGFLCPVHTPDGEPCGLLNHM STC
Sbjct: 424  RLNFLRFLSHFRAVHRGASFAGLRTTSVRKLLPEAWGFLCPVHTPDGEPCGLLNHMASTC 483

Query: 471  RVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIP 530
            R+ SY+DSRGN RDF K+R SIL VLIG+GM P+LPKLV++GPP VLSV+LDGRVVG IP
Sbjct: 484  RITSYFDSRGNTRDFFKIRMSILSVLIGIGMTPALPKLVQAGPPEVLSVILDGRVVGSIP 543

Query: 531  SSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISL 590
            SSE+E  V HLRRLKVSA SVIPDDLEVGY+PLS+GGAYPGLYLFTSP +FVRPVRNIS+
Sbjct: 544  SSEVETAVNHLRRLKVSAISVIPDDLEVGYIPLSMGGAYPGLYLFTSPSRFVRPVRNISI 603

Query: 591  PSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDH 650
            PSEE  +IELIGPFEQV+MEIRCPDG DGGRRN FPATHEEIHPTGMLSVVA+LTP+SDH
Sbjct: 604  PSEEGHDIELIGPFEQVYMEIRCPDGSDGGRRNIFPATHEEIHPTGMLSVVASLTPWSDH 663

Query: 651  NQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGT 710
            NQSPRNMYQCQM KQTM FS QA+  RADQKLYHLQTPQTPIVRT+ Y KY +DE+PTGT
Sbjct: 664  NQSPRNMYQCQMGKQTMAFSSQAINCRADQKLYHLQTPQTPIVRTSAYVKYSMDEFPTGT 723

Query: 711  NAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNK 770
            NAIVAVLAY+GYDMEDAMILNKSSVDRG+CHGQIYQTETIDLSD+ NK DRGQ++FRR+ 
Sbjct: 724  NAIVAVLAYSGYDMEDAMILNKSSVDRGLCHGQIYQTETIDLSDENNKSDRGQRMFRRSN 783

Query: 771  DAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKN 830
              KS +S+IDSDGLPYVGQMI+P EPYCSIY++ T+S R    KGSE V VDYVA+D KN
Sbjct: 784  VDKSANSLIDSDGLPYVGQMINPNEPYCSIYNEVTSSTRATKLKGSEPVIVDYVALDAKN 843

Query: 831  SKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPH 890
             K+ PQK NIRFR  RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPH
Sbjct: 844  KKH-PQKVNIRFRRPRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPH 902

Query: 891  AFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLR 950
            AFPSRMTIAMLLESVAAKGGSLHGKF+DATPF++S++K NG+ G+ ES SLVDELG ML 
Sbjct: 903  AFPSRMTIAMLLESVAAKGGSLHGKFVDATPFSDSLRKANGEAGS-ESSSLVDELGSMLT 961

Query: 951  TCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIK 1010
            + GFNYHGVEVLYSG YGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGT+DQ+TRQPIK
Sbjct: 962  SYGFNYHGVEVLYSGFYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTVDQVTRQPIK 1021

Query: 1011 GRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKR 1070
            GRKRGGGIRFGEMERDS+LAHGAAYLLHDRLHTCSD+H+ADVCSLCGS+LT + I PQKR
Sbjct: 1022 GRKRGGGIRFGEMERDSMLAHGAAYLLHDRLHTCSDHHIADVCSLCGSILTTSIIQPQKR 1081

Query: 1071 AIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGDGAT 1130
            A+REIGGLPP RAPKKVTCHACQTSKGMETV+MPY+FR+LAAELAAMNIK+TLQL +GA 
Sbjct: 1082 AVREIGGLPPGRAPKKVTCHACQTSKGMETVSMPYIFRFLAAELAAMNIKMTLQLSNGAG 1141

Query: 1131 A 1131
            A
Sbjct: 1142 A 1142


>gi|255578257|ref|XP_002529996.1| DNA-directed RNA polymerase I subunit, putative [Ricinus communis]
 gi|223530519|gb|EEF32401.1| DNA-directed RNA polymerase I subunit, putative [Ricinus communis]
          Length = 1159

 Score = 1882 bits (4875), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 886/1146 (77%), Positives = 1004/1146 (87%), Gaps = 27/1146 (2%)

Query: 7    ADFEPLRELVRHHIESFDYMLDEGLSEMFDH-----------------CRQAKISYTGKL 49
             D+  L+EL RHHI+SFDYM++ GL  M D+                 CRQAKISYTGK 
Sbjct: 16   GDYSALQELTRHHIDSFDYMIERGLEIMLDNIKPESSRTKHKRLLPFECRQAKISYTGKF 75

Query: 50   MADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFIL 109
             ADV F+Y   G  V+RE++NFGQ P+MLK+R CHL G DSQ+LVS  EE+AEMGGYFIL
Sbjct: 76   EADVCFEY--HGKAVIREKYNFGQLPIMLKSRLCHLYGVDSQQLVSFNEESAEMGGYFIL 133

Query: 110  NGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRK------DQSSVTLKL 163
            NGLERV R +I+PK+NYPMS VR SFRDRREGYTDKAVVIRCVR+      DQSSV++KL
Sbjct: 134  NGLERVVRLLIMPKRNYPMSTVRGSFRDRREGYTDKAVVIRCVREYQSSLTDQSSVSVKL 193

Query: 164  YYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSP 223
            YYL +GS RLGFW+QG+EYLLP GIVLKAL +T D EI+  LTCCYDEKY+K KGAVGS 
Sbjct: 194  YYLRSGSARLGFWIQGREYLLPAGIVLKALAETTDREIYEKLTCCYDEKYEKAKGAVGSQ 253

Query: 224  LVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHL 283
            LV ER KIIL EV+DLSL T+ +CL+HIGEHFQPV+DGL+ E++  VA  V++DYIFVHL
Sbjct: 254  LVGERAKIILDEVRDLSLFTQSECLRHIGEHFQPVMDGLEKETFSNVAHAVLKDYIFVHL 313

Query: 284  NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKG 343
            N+ +DKFNLLIFMLQKLFSLVD TSV DNPDSLQNQE+LLPGHL+TIYLKEKLE+WLRK 
Sbjct: 314  NNYDDKFNLLIFMLQKLFSLVDQTSVVDNPDSLQNQEVLLPGHLVTIYLKEKLEEWLRKA 373

Query: 344  KKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRA 403
            KK++Q+EI  N   F+F ++ ++KKV++KNPS  I  ++E MLKTGRL TQTGLDLQQRA
Sbjct: 374  KKVLQEEIAKN-NNFNFLSVLDVKKVIDKNPSTTISLAVENMLKTGRLVTQTGLDLQQRA 432

Query: 404  GYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLL 463
            GYTVQAERLNFLRF+SFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLL
Sbjct: 433  GYTVQAERLNFLRFLSFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLL 492

Query: 464  NHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDG 523
            NHMT +CR+ SY+DS+G ++DF  +R SIL VL  +GM  SLPKLV++GPP VLSVLLDG
Sbjct: 493  NHMTRSCRITSYFDSQGAVKDFFDIRKSILGVLTSLGMTSSLPKLVQAGPPQVLSVLLDG 552

Query: 524  RVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVR 583
            RVVG IPSS++EKVV HLRRLKV+A+SVIPDDLEVGYVPLS+GGA+PGLYLFTSP +F+R
Sbjct: 553  RVVGSIPSSQVEKVVVHLRRLKVAASSVIPDDLEVGYVPLSMGGAFPGLYLFTSPSRFIR 612

Query: 584  PVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVAN 643
            PV+NIS+P+ E +NIELIGPFEQVFMEIRCPDGG+GGR +AFPATHEEIHPT MLSVVAN
Sbjct: 613  PVKNISIPAGEGENIELIGPFEQVFMEIRCPDGGNGGRSDAFPATHEEIHPTDMLSVVAN 672

Query: 644  LTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGI 703
            LTP+SDHNQSPRNMYQCQMAKQTM FS+Q+L+FRADQKLYHLQTPQTPIVRT++YTKY +
Sbjct: 673  LTPWSDHNQSPRNMYQCQMAKQTMAFSLQSLRFRADQKLYHLQTPQTPIVRTSSYTKYCV 732

Query: 704  DEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQ 763
            DEYPTGTNAIVAVLAYTGYDMEDAMILNKSSV+RGMCHGQIYQTETIDLS++G++ DR Q
Sbjct: 733  DEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMCHGQIYQTETIDLSEEGSRSDRAQ 792

Query: 764  KLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDY 823
            ++FRR+   KSLHSVIDSDGLPYVGQMIHP EPYCSIY++ TN+ RTN+RKGS+ V VDY
Sbjct: 793  RMFRRSNIDKSLHSVIDSDGLPYVGQMIHPNEPYCSIYNEITNTTRTNNRKGSDPVIVDY 852

Query: 824  VAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRP 883
            VA+D KN K+L QK NIRFRH RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRP
Sbjct: 853  VAIDTKNKKHL-QKVNIRFRHPRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRP 911

Query: 884  DLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVD 943
            DLIINPHAFPSRMTIAMLLES+AAKGGSL+GKF+DATPF +SVK  NG     ES+SLVD
Sbjct: 912  DLIINPHAFPSRMTIAMLLESLAAKGGSLNGKFVDATPFTSSVKNVNGGEAKSESESLVD 971

Query: 944  ELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQ 1003
            +LG MLR+ GFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGT+DQ
Sbjct: 972  DLGNMLRSHGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTVDQ 1031

Query: 1004 ITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTAT 1063
            ITRQPIKGRKRGGGIRFGEMERD++LAHGAAYLLHDRLHTCSDYH+ADVCSLCGS+LT +
Sbjct: 1032 ITRQPIKGRKRGGGIRFGEMERDAMLAHGAAYLLHDRLHTCSDYHIADVCSLCGSILTTS 1091

Query: 1064 FIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITL 1123
            FI  QKR +R+IGGLPP  APKKV CH+CQTSKGMETVAMPYVFRYLAAELAAMNIK+ +
Sbjct: 1092 FIQTQKRVVRDIGGLPPVGAPKKVACHSCQTSKGMETVAMPYVFRYLAAELAAMNIKMNV 1151

Query: 1124 QLGDGA 1129
            QL  GA
Sbjct: 1152 QLSGGA 1157


>gi|356548837|ref|XP_003542805.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like [Glycine
            max]
          Length = 1175

 Score = 1820 bits (4715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 869/1166 (74%), Positives = 994/1166 (85%), Gaps = 48/1166 (4%)

Query: 8    DFEPLRELVRHHIESFDYMLDEGLSEMFDH------------------------------ 37
            DFE LREL +HHIESFDYM+D GL  M  H                              
Sbjct: 10   DFEALRELFKHHIESFDYMVDAGLDTMLGHIKPVEVFDDFTSTKLRIWLDNPVLYPPQKE 69

Query: 38   --------------CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRC 83
                          CRQAKISY+GK+  DV FQY D   P++RE  NFGQFP+ML+++ C
Sbjct: 70   RISRTMREALLPFECRQAKISYSGKITIDVCFQYNDG--PIIRENVNFGQFPIMLQSKLC 127

Query: 84   HLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYT 143
            +L+GAD QKLVS KEEA+EMGGYFILNGLERV R +ILPK+NYPMSMVR+SF DRREGYT
Sbjct: 128  NLRGADPQKLVSYKEEASEMGGYFILNGLERVVRLLILPKRNYPMSMVRNSFSDRREGYT 187

Query: 144  DKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFN 203
            DKAVVIRCVR DQSS++++LYYL NGS RLGFWL+G+EYLLPVGI+LKAL+DT D EI+ 
Sbjct: 188  DKAVVIRCVRADQSSLSVRLYYLRNGSARLGFWLRGREYLLPVGIILKALIDTTDREIYV 247

Query: 204  HLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQ 263
            +LT CY+EKY+K KGAVG+ LV ER KIIL E++DLSL TRLQCL++IGEHFQPV++ L+
Sbjct: 248  NLTSCYNEKYEKGKGAVGTQLVGERAKIILDELRDLSLFTRLQCLEYIGEHFQPVMNELK 307

Query: 264  SESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILL 323
            ++SY  VA+ V++D I VHL++N DKFNLLIFMLQKLFSL+D TSV DNPDSLQN E+LL
Sbjct: 308  NDSYPIVADAVLKDCILVHLDNNFDKFNLLIFMLQKLFSLIDQTSVPDNPDSLQNHEVLL 367

Query: 324  PGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIE 383
            PGHLIT+YLKEKLEDWL+KG++L+ DEI+   KKFDF ++  +KKVM+KN  KQ+ T++E
Sbjct: 368  PGHLITLYLKEKLEDWLQKGRRLLLDEIDKKSKKFDFSDIVQVKKVMDKNSPKQVSTAVE 427

Query: 384  TMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLP 443
             MLKTGRL TQTGLDLQQRAGYTVQAERLNFLRF+S FRAVHRGASFAGLRTT+VRKLLP
Sbjct: 428  NMLKTGRLVTQTGLDLQQRAGYTVQAERLNFLRFLSHFRAVHRGASFAGLRTTTVRKLLP 487

Query: 444  ESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP 503
            ESWGFLCPVHTPDGEPCGLLNHMT T R+ S++DS+GNI+D+ K++ SIL VL+ VGM P
Sbjct: 488  ESWGFLCPVHTPDGEPCGLLNHMTCTSRITSFFDSQGNIKDYFKIKMSILNVLLEVGMTP 547

Query: 504  SLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL 563
            SLPK+   GPP  L+VLLDG VVG I SSE+EKVVAH+R LKVS+ +VIPDD+EVGYVPL
Sbjct: 548  SLPKIFLPGPPEALTVLLDGCVVGCIASSEVEKVVAHIRELKVSSVAVIPDDMEVGYVPL 607

Query: 564  SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRN 623
            S+GGAYPGLYL TSP +FVRPVRNIS+ S+ S+NIELIGPFEQVFMEIRCPDGGDGGR++
Sbjct: 608  SMGGAYPGLYLCTSPSRFVRPVRNISIASDGSENIELIGPFEQVFMEIRCPDGGDGGRKS 667

Query: 624  AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
            +FPATHEEIHPT MLSVVANLTP+SDHNQSPRNMYQCQMAKQTM FS Q ++ RADQKLY
Sbjct: 668  SFPATHEEIHPTVMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAFSSQTIQHRADQKLY 727

Query: 684  HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
            HLQTPQTPIVRT+TYTKY IDE+PTGTNAIVAVLAYTGYDMEDAMILNKSSV+RGM HGQ
Sbjct: 728  HLQTPQTPIVRTSTYTKYNIDEFPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQ 787

Query: 744  IYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDK 803
            IYQTETIDL++ G + DR  ++FR++   KS    IDSDGLP+VGQMI P EPYCSIY++
Sbjct: 788  IYQTETIDLTEQGGRSDRSSRMFRKSNIEKSACPSIDSDGLPHVGQMIRPDEPYCSIYNE 847

Query: 804  TTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGV 863
             T+S  T  RKGSE+V+VDYVA D+KN K+L QK NIRFRH RNP+IGDKFSSRHGQKGV
Sbjct: 848  VTSSIHTLKRKGSEAVYVDYVAADVKNKKHL-QKVNIRFRHPRNPVIGDKFSSRHGQKGV 906

Query: 864  CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFA 923
            CSQLWPD+DMPFSG TGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSL G+F+DATPF 
Sbjct: 907  CSQLWPDVDMPFSGTTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLRGEFVDATPFR 966

Query: 924  NSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQ 983
            +SV K +G++ + +S SLVD+LG +LR  GFNYHG+EVLYSGVYGTELTCEIFIGPVYYQ
Sbjct: 967  SSVTKDSGESDS-KSGSLVDDLGLLLREKGFNYHGLEVLYSGVYGTELTCEIFIGPVYYQ 1025

Query: 984  RLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHT 1043
            RLRHMVSDKFQVRSTGT+DQ+TRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHT
Sbjct: 1026 RLRHMVSDKFQVRSTGTIDQVTRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHT 1085

Query: 1044 CSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAM 1103
            CSDYH+ADVCSLCGS+L  TFI PQKR +REIGGLPP RAPKKVTCHACQTSKGMETVAM
Sbjct: 1086 CSDYHIADVCSLCGSMLATTFIQPQKRPVREIGGLPPGRAPKKVTCHACQTSKGMETVAM 1145

Query: 1104 PYVFRYLAAELAAMNIKITLQLGDGA 1129
            PYVFRYLAAELAAMNIK+TL+L DGA
Sbjct: 1146 PYVFRYLAAELAAMNIKMTLKLSDGA 1171


>gi|449458081|ref|XP_004146776.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like [Cucumis
            sativus]
          Length = 1173

 Score = 1819 bits (4712), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 860/1170 (73%), Positives = 992/1170 (84%), Gaps = 47/1170 (4%)

Query: 5    KSADFEPLRELVRHHIESFDYMLDEGLS---------EMFD------------------- 36
            ++ D+E LREL RHHIESFD+++D GL          E++D                   
Sbjct: 7    ENEDYEALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTNKKLRIWLGKPELYPP 66

Query: 37   ----------------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKT 80
                             CRQAKISYTGK MADV FQY +    V+RE+FNFGQFP+MLK+
Sbjct: 67   QKERNLRTIREALLPYECRQAKISYTGKFMADVCFQYDEKA--VIREKFNFGQFPIMLKS 124

Query: 81   RRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRRE 140
            + CHL+G D +KLVS  EEA+EMGGYF++NGLERV R +I PK+NYP SMVR+SF DRRE
Sbjct: 125  KLCHLRGLDPKKLVSYNEEASEMGGYFVMNGLERVVRLLIAPKRNYPTSMVRNSFSDRRE 184

Query: 141  GYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLE 200
            GYTDKAVVIRCVR+DQSSVT+KLYYL NGS RLGFW+QGKEYLLP+G+VLKAL+DT D E
Sbjct: 185  GYTDKAVVIRCVREDQSSVTVKLYYLRNGSARLGFWVQGKEYLLPIGVVLKALIDTTDHE 244

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I+  LT CY +K+ K KGAVG+ LV ER KIIL EV+DL+L    QCL HIG+HFQPV++
Sbjct: 245  IYASLTSCYSDKHGKSKGAVGTQLVGERAKIILDEVRDLALFDHRQCLDHIGQHFQPVME 304

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQE 320
            GL  E +  VA+ V++DYIFVHL++N DKFNLLIFM QKLFSL+D TSV DNPDSLQNQ+
Sbjct: 305  GLGKEKFSTVADAVLKDYIFVHLDNNYDKFNLLIFMAQKLFSLIDQTSVPDNPDSLQNQD 364

Query: 321  ILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGT 380
            +LLPG LIT+YLKEKLEDWL+K KKL++DEI N  K F+F +LA++KKVM+KNPSKQ+ +
Sbjct: 365  VLLPGQLITLYLKEKLEDWLQKVKKLLEDEISNPSKNFEFCSLAHVKKVMDKNPSKQVSS 424

Query: 381  SIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRK 440
            ++E MLKTGRL TQTGLDLQQRAG+TVQAERLNFLRF+S FRAVHRGASFAGLRTT+VRK
Sbjct: 425  AVENMLKTGRLVTQTGLDLQQRAGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRK 484

Query: 441  LLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVG 500
            LLPESWGFLCPVHTPDGEPCGLLNH+TSTCR+ S+++S+G +RDF K+RTSIL VLI VG
Sbjct: 485  LLPESWGFLCPVHTPDGEPCGLLNHLTSTCRITSHFNSQGKVRDFYKIRTSILSVLIAVG 544

Query: 501  MIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGY 560
            MIPSLPKLV+ G P  L+VLLDGR+VG I S+E+EK+VAHLRRLKV +  VIPDDLEVGY
Sbjct: 545  MIPSLPKLVQMGLPDFLNVLLDGRIVGYISSNEVEKIVAHLRRLKVLSPHVIPDDLEVGY 604

Query: 561  VPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGG 620
            VPLS+ GAYPGLYLFTSP +FVRPV+N+S+  E++ NIELIGPFEQVFMEIRCPDGGDGG
Sbjct: 605  VPLSISGAYPGLYLFTSPSRFVRPVKNLSISPEDNHNIELIGPFEQVFMEIRCPDGGDGG 664

Query: 621  RRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQ 680
            R++ FPATHEEIHPTGMLSVVANLTP+SDHNQSPRNMYQCQMAKQTM FS+QA+++RADQ
Sbjct: 665  RKDEFPATHEEIHPTGMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIRYRADQ 724

Query: 681  KLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMC 740
            KLYHLQTPQTPIVRT+TYTKY IDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSV+RGM 
Sbjct: 725  KLYHLQTPQTPIVRTSTYTKYNIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMF 784

Query: 741  HGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSI 800
            HGQIYQTETIDLSD GN+  R QK+FRR+    S+ S+ID+DGLPYVGQMI P EPYCSI
Sbjct: 785  HGQIYQTETIDLSDQGNRSSRSQKMFRRSNIDTSVRSIIDADGLPYVGQMIQPDEPYCSI 844

Query: 801  YDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQ 860
            YD+   + RT   KGSE+V VDYV+VD+KN KN PQK NIRFR  RNP+IGDKFSSRHGQ
Sbjct: 845  YDEVAGTTRTMKLKGSEAVIVDYVSVDVKN-KNNPQKVNIRFRRPRNPMIGDKFSSRHGQ 903

Query: 861  KGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDAT 920
            KGVCSQLWPD+DMPF G TGMRPDLIINPHAFPSRMTIAML+ESVAAKGG L+G+F++AT
Sbjct: 904  KGVCSQLWPDVDMPFCGATGMRPDLIINPHAFPSRMTIAMLMESVAAKGGCLNGEFVNAT 963

Query: 921  PFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPV 980
            PF +SV KTN        ++LVDELG  L   GFNYHG+EVLYSGVYGTELTCEIFIGPV
Sbjct: 964  PFRSSVNKTNAGDEETNGETLVDELGSTLIKKGFNYHGLEVLYSGVYGTELTCEIFIGPV 1023

Query: 981  YYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDR 1040
            YYQRLRHMVSDK+QVRSTGT+DQ+TRQPIKGRK+GGGIRFGEMERDS+LAHGA+YLLHDR
Sbjct: 1024 YYQRLRHMVSDKYQVRSTGTVDQVTRQPIKGRKKGGGIRFGEMERDSMLAHGASYLLHDR 1083

Query: 1041 LHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMET 1100
            LHTCSD+H+ADVCSLCGSVLT++F+ P KRA+REIGGLPP +APK+VTCHAC+TSKGMET
Sbjct: 1084 LHTCSDHHIADVCSLCGSVLTSSFVQPPKRAVREIGGLPPGKAPKRVTCHACKTSKGMET 1143

Query: 1101 VAMPYVFRYLAAELAAMNIKITLQLGDGAT 1130
            VAMPYVF+YLAAELAAMNIK+TLQL  GA 
Sbjct: 1144 VAMPYVFKYLAAELAAMNIKMTLQLSSGAA 1173


>gi|296087844|emb|CBI35100.3| unnamed protein product [Vitis vinifera]
          Length = 1113

 Score = 1803 bits (4671), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 857/1094 (78%), Positives = 963/1094 (88%), Gaps = 27/1094 (2%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CRQAKISY+GKL+ADV FQY       +RE+FN GQFP+MLK++ CHL+GAD QKLVS K
Sbjct: 47   CRQAKISYSGKLLADVCFQY--GNGVAIREKFNLGQFPIMLKSKLCHLRGADPQKLVSCK 104

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EE++EMGGYFILNGLERV R +ILPK+NYPMSMVR+SFRDRREGYTDKAVVIRCVR+DQS
Sbjct: 105  EESSEMGGYFILNGLERVVRLLILPKRNYPMSMVRNSFRDRREGYTDKAVVIRCVREDQS 164

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            +VT+KLYYL NGS RLGFW+QG+EYLLPVG+VLKAL+DT D EI+  LTCCY EKY+  K
Sbjct: 165  AVTVKLYYLRNGSARLGFWIQGREYLLPVGVVLKALIDTTDHEIYESLTCCYSEKYEGGK 224

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
            GAVG+ LV ERVKIIL EV+DLSL TR QCLQHIGEHFQ V+DGL++ESY  VA+ V+R+
Sbjct: 225  GAVGTQLVGERVKIILDEVRDLSLFTRHQCLQHIGEHFQLVMDGLENESYSIVADAVLRE 284

Query: 278  YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
            YIFVHL++N DKFNLLIFM+QKLFSL+D TSV DNPD LQNQE+LLPGHLITIYLKEKL+
Sbjct: 285  YIFVHLDNNYDKFNLLIFMVQKLFSLIDQTSVPDNPDVLQNQEVLLPGHLITIYLKEKLQ 344

Query: 338  DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
            +WL K ++L+QDEI N  K F+F +LA++KKVM+KNPS+QI  ++E MLKTGRL TQ+GL
Sbjct: 345  EWLYKARRLLQDEI-NKRKNFEFSSLAHVKKVMDKNPSRQISLAVENMLKTGRLVTQSGL 403

Query: 398  DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDG 457
            DLQQRAG TVQAERLNFLRF+S FRAVHRGASFAGLRTTSVRKLLPE+WGFLCPVHTPDG
Sbjct: 404  DLQQRAGMTVQAERLNFLRFLSHFRAVHRGASFAGLRTTSVRKLLPEAWGFLCPVHTPDG 463

Query: 458  EPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVL 517
            EPCGLLNHM STCR+ SY+DSRGN RDF K+R SIL VLIG+GM P+LPKLV++GPP VL
Sbjct: 464  EPCGLLNHMASTCRITSYFDSRGNTRDFFKIRMSILSVLIGIGMTPALPKLVQAGPPEVL 523

Query: 518  SVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTS 577
            SV+LDGRVVG IPSSE+E  V HLRRLKVSA SVIPDDLEVGY+PLS+GGAYPGLYLFTS
Sbjct: 524  SVILDGRVVGSIPSSEVETAVNHLRRLKVSAISVIPDDLEVGYIPLSMGGAYPGLYLFTS 583

Query: 578  PPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGM 637
            P +FVRPVRNIS+PSEE  +IELIGPFEQV+MEIRCPDG DGGRRN FPATHEEIHPTGM
Sbjct: 584  PSRFVRPVRNISIPSEEGHDIELIGPFEQVYMEIRCPDGSDGGRRNIFPATHEEIHPTGM 643

Query: 638  LSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNT 697
            LSVVA+LTP+SDHNQSPRNMYQCQM KQTM FS QA+  RADQKLYHLQTPQTPIVRT+ 
Sbjct: 644  LSVVASLTPWSDHNQSPRNMYQCQMGKQTMAFSSQAINCRADQKLYHLQTPQTPIVRTSA 703

Query: 698  YTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGN 757
            Y KY +DE+PTGTNAIVAVLAY+GYDMEDAMILNKSSVDRG+CHGQIYQTETIDLSD+ N
Sbjct: 704  YVKYSMDEFPTGTNAIVAVLAYSGYDMEDAMILNKSSVDRGLCHGQIYQTETIDLSDENN 763

Query: 758  KVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSE 817
            K DRGQ++FRR+   KS +S+IDSDGLPYVGQMI+P EPYCSIY++ T+S R    KGSE
Sbjct: 764  KSDRGQRMFRRSNVDKSANSLIDSDGLPYVGQMINPNEPYCSIYNEVTSSTRATKLKGSE 823

Query: 818  SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
             V VDYVA+D KN K+ PQK NIRFR  RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG
Sbjct: 824  PVIVDYVALDAKNKKH-PQKVNIRFRRPRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 882

Query: 878  VTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDE 937
            VTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKF+DATPF++S++K NG+ G+ E
Sbjct: 883  VTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFVDATPFSDSLRKANGEAGS-E 941

Query: 938  SKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRS 997
            S SLVDELG ML + GFNYHGVEVLYSG YGTELTCEIFIGPVYYQRLRHMVSDKFQVRS
Sbjct: 942  SSSLVDELGSMLTSYGFNYHGVEVLYSGFYGTELTCEIFIGPVYYQRLRHMVSDKFQVRS 1001

Query: 998  TGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCG 1057
            TGT+DQ+TRQPIKGRKRGGGIRFGEMERDS+LAHGAAYLLHDRLHTCSD+H+ADVCSLCG
Sbjct: 1002 TGTVDQVTRQPIKGRKRGGGIRFGEMERDSMLAHGAAYLLHDRLHTCSDHHIADVCSLCG 1061

Query: 1058 SVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAM 1117
            S+LT + I PQKRA                      TSKGMETV+MPY+FR+LAAELAAM
Sbjct: 1062 SILTTSIIQPQKRA----------------------TSKGMETVSMPYIFRFLAAELAAM 1099

Query: 1118 NIKITLQLGDGATA 1131
            NIK+TLQL +GA A
Sbjct: 1100 NIKMTLQLSNGAGA 1113


>gi|356563684|ref|XP_003550091.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like [Glycine
            max]
          Length = 1175

 Score = 1802 bits (4668), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 871/1168 (74%), Positives = 993/1168 (85%), Gaps = 48/1168 (4%)

Query: 8    DFEPLRELVRHHIESFDYMLDEGLSEMFDH------------------------------ 37
            DFE LREL +HHIESFDYM D GL  M  H                              
Sbjct: 10   DFEALRELFKHHIESFDYMADAGLETMLRHIKPIEVFDDFTSTKLRIWLDNPVLYPPQKE 69

Query: 38   --------------CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRC 83
                          CRQAKISY GK+  DV FQY D   P++RE  NFGQFP+ML+++ C
Sbjct: 70   RISRTMREALLPFECRQAKISYAGKITIDVCFQYNDG--PIIRENINFGQFPIMLQSKLC 127

Query: 84   HLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYT 143
            +L+GAD QKLVS +EEA+EMGGYFILNGLERV R +ILPK+N+PMSMVR+SF DRREGYT
Sbjct: 128  NLRGADPQKLVSYREEASEMGGYFILNGLERVIRLLILPKRNHPMSMVRNSFSDRREGYT 187

Query: 144  DKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFN 203
            DKA+VIRCVR DQSS++++LYYL NGS RLGFWL+G+EYLLPVGI+LKAL+DT D EI+ 
Sbjct: 188  DKAIVIRCVRADQSSLSVRLYYLRNGSARLGFWLRGREYLLPVGIILKALIDTTDREIYV 247

Query: 204  HLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQ 263
            +LT CY+EKY+K KGAVG+ LV ER KIIL E++DLSL TRLQCL++IGEHFQPVI  L+
Sbjct: 248  NLTSCYNEKYEKGKGAVGTQLVGERAKIILDELRDLSLFTRLQCLEYIGEHFQPVITELK 307

Query: 264  SESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILL 323
            ++SY  VAE V++D I VHL++N DKFNLLIFMLQKLFSL+D TSV DNPDSLQN E+LL
Sbjct: 308  NDSYPIVAEAVLKDCILVHLDNNFDKFNLLIFMLQKLFSLIDQTSVPDNPDSLQNHEVLL 367

Query: 324  PGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIE 383
            PGHLIT+YLKEKLEDWL+KGK+L+ DEI+   KKFDF ++  +KKVM+KN  KQ+ T++E
Sbjct: 368  PGHLITLYLKEKLEDWLQKGKRLLLDEIDKKSKKFDFSDIVQVKKVMDKNSPKQVSTAVE 427

Query: 384  TMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLP 443
             MLKTGRL TQTGLDLQQRAGYTVQAERLNFLRF+S FRAVHRGASFAGLRTT+VRKLLP
Sbjct: 428  NMLKTGRLVTQTGLDLQQRAGYTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRKLLP 487

Query: 444  ESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP 503
            ESWGFLCPVHTPDGEPCGLLNHMT T R+ S++DS+GN++D+ K++ SIL VL+ VGM P
Sbjct: 488  ESWGFLCPVHTPDGEPCGLLNHMTCTSRITSFFDSQGNVKDYFKIKMSILNVLLEVGMTP 547

Query: 504  SLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL 563
            SLPK+   GPP  L+VLLDG VVG I SSE EKVVAH+R LKVS+A+VIPDD+EVGYVPL
Sbjct: 548  SLPKIFLPGPPEALTVLLDGCVVGCIASSEAEKVVAHIRELKVSSAAVIPDDMEVGYVPL 607

Query: 564  SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRN 623
            S+GGAYPGLYL TSP +FVRPVRNIS+PS  S+NIE IGPFEQVFMEIRCPDGGDGGR++
Sbjct: 608  SMGGAYPGLYLCTSPSRFVRPVRNISIPSNGSENIEFIGPFEQVFMEIRCPDGGDGGRKS 667

Query: 624  AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
            +FPATHEEIHPT MLSVVANLTP+SDHNQSPRNMYQCQMAKQTM FS Q ++ RADQKLY
Sbjct: 668  SFPATHEEIHPTVMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAFSSQTIQHRADQKLY 727

Query: 684  HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
            HLQTPQTPIVRT+TYTKY IDE+PTGTNAIVAVLAYTGYDMEDAMILNKSSV+RGM HGQ
Sbjct: 728  HLQTPQTPIVRTSTYTKYNIDEFPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQ 787

Query: 744  IYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDK 803
            IYQTETIDL++ G ++DR  ++FR++   KS    IDSDGLP+VGQMI P EPYCSIY++
Sbjct: 788  IYQTETIDLTEQGGRLDRSSRMFRKSNLEKSACPSIDSDGLPHVGQMIRPDEPYCSIYNE 847

Query: 804  TTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGV 863
             T+S  T  RKGSE+V+VDYVAVD+KN K+L QK NIRFRH RNP+IGDKFSSRHGQKGV
Sbjct: 848  VTSSIHTLKRKGSEAVYVDYVAVDVKNKKHL-QKVNIRFRHPRNPVIGDKFSSRHGQKGV 906

Query: 864  CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFA 923
            CSQLWPD+DMPFSG TGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSL G+F+DATPF 
Sbjct: 907  CSQLWPDVDMPFSGNTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLRGEFVDATPFR 966

Query: 924  NSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQ 983
            +SVKK +G++ +  S S+VD+LG +LR  GFNYHG+EVLYSGVYGTELTCEIFIGPVYYQ
Sbjct: 967  SSVKKDSGESDS-MSGSIVDDLGLLLREKGFNYHGLEVLYSGVYGTELTCEIFIGPVYYQ 1025

Query: 984  RLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHT 1043
            RLRHMVSDKFQVRSTGT+DQ+TRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHT
Sbjct: 1026 RLRHMVSDKFQVRSTGTIDQVTRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHT 1085

Query: 1044 CSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAM 1103
            CSDYH+ADVCSLCGS+LT TF  PQKR +REIGGLPP RAPKKVTCHACQTSKGMETVAM
Sbjct: 1086 CSDYHIADVCSLCGSMLTTTFTQPQKRPVREIGGLPPGRAPKKVTCHACQTSKGMETVAM 1145

Query: 1104 PYVFRYLAAELAAMNIKITLQLGDGATA 1131
            PYVFRYLAAELAAMNIK+TL+L DGA A
Sbjct: 1146 PYVFRYLAAELAAMNIKMTLKLSDGAGA 1173


>gi|224053240|ref|XP_002297732.1| predicted protein [Populus trichocarpa]
 gi|222844990|gb|EEE82537.1| predicted protein [Populus trichocarpa]
          Length = 1109

 Score = 1745 bits (4520), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 837/1129 (74%), Positives = 962/1129 (85%), Gaps = 29/1129 (2%)

Query: 8    DFEPLRELVRHHIESFDYMLDEGLSEMFDH---CRQAKISYTGKLMADVEFQYLDAGSPV 64
            +F+ L ELVRHHI+SFDYM+D GL  M D+   CRQAK+SYTGK  ADV FQY   G PV
Sbjct: 1    EFKELEELVRHHIDSFDYMVDRGLEIMLDNIKPCRQAKVSYTGKFEADVCFQY--DGRPV 58

Query: 65   VRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQ 124
            +RE++NFGQFP+MLK++ C+L+ AD Q+LVSLKEEA+E+GGYFILNG+ERVFR +I+PKQ
Sbjct: 59   IREKYNFGQFPIMLKSKLCYLRSADPQQLVSLKEEASEVGGYFILNGIERVFRCLIMPKQ 118

Query: 125  NYPMSMVRSSFRDRREGYTDKAVVIRCVRK------DQSSVTLKLYYLLNGSVRLGFWLQ 178
            NYPMSM R S+R+RREG+TDKAVVIRCVR+      D SSVT++LYYL NGS R+GFW++
Sbjct: 119  NYPMSMTRGSYRERREGHTDKAVVIRCVREYQSSLTDHSSVTVRLYYLRNGSARVGFWVR 178

Query: 179  GKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQD 238
            G+EYLLPVGIVLKALV+T D EI+ +LT  YDEKY++ KGAVGS L+ ER KIIL EV+ 
Sbjct: 179  GREYLLPVGIVLKALVETTDREIYENLTSYYDEKYEEVKGAVGSQLLGERAKIILDEVRV 238

Query: 239  LSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQ 298
             +L T+  CLQHIG H    I          VA  V++DY+FVHL + +DKF+LLIFMLQ
Sbjct: 239  AALFTQDDCLQHIGTHNCISIS-------ITVAHAVLKDYVFVHLPNFHDKFSLLIFMLQ 291

Query: 299  KLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKF 358
            KLFS VDHTS  DNPDSLQNQ+ILLPGHL+TIYLKEKLEDWLRK K L+QDE+  N   F
Sbjct: 292  KLFSFVDHTSAPDNPDSLQNQDILLPGHLMTIYLKEKLEDWLRKAKSLVQDELTKN-NTF 350

Query: 359  DFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFI 418
            +F  + +++KVM+KN    + T++E+ML++GRLATQTGLDLQQRAGYTVQAERLN+LRF+
Sbjct: 351  NFLAVGDVRKVMDKNSPVTVSTAVESMLRSGRLATQTGLDLQQRAGYTVQAERLNYLRFL 410

Query: 419  SFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDS 478
            SFFRAVHRGASFAG RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMT +CRV SY+DS
Sbjct: 411  SFFRAVHRGASFAGGRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTCSCRVTSYFDS 470

Query: 479  RGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVV 538
            +G ++DF  +R SIL VL  +GMI SLPKLV++GPP  LSVLLDGRV+G +PSSEIEKV+
Sbjct: 471  QGVVKDFFDIRKSILGVLTSLGMIASLPKLVQAGPPKALSVLLDGRVIGSLPSSEIEKVI 530

Query: 539  AHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNI 598
            AHLRRLKVSA S IPDD+EVGYVPLS+GGAYPGLY+ T P +F+RPVRNIS+P EE Q+I
Sbjct: 531  AHLRRLKVSATSAIPDDMEVGYVPLSIGGAYPGLYISTYPSRFIRPVRNISIPCEERQDI 590

Query: 599  ELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMY 658
            ELIGPFEQV  E            NAFPATHEEIHPT MLSVVANLTP+SDHNQSPRNMY
Sbjct: 591  ELIGPFEQVSTEFSF--------LNAFPATHEEIHPTNMLSVVANLTPWSDHNQSPRNMY 642

Query: 659  QCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLA 718
            QCQMAKQTM FS+Q+L+FRADQK+YHLQTPQTPIVRT  YTKY IDE+PTGTNAIVAVLA
Sbjct: 643  QCQMAKQTMAFSLQSLRFRADQKIYHLQTPQTPIVRTGAYTKYSIDEHPTGTNAIVAVLA 702

Query: 719  YTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSV 778
            YTGYDMEDAMILNKSSVDRGM HGQIYQTETIDLSD+G++ DR  + FRR+   +S HS+
Sbjct: 703  YTGYDMEDAMILNKSSVDRGMFHGQIYQTETIDLSDEGSRSDRSHRRFRRSNTDRSSHSL 762

Query: 779  IDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA 838
            IDSDGLPYVGQ+I+P EPYCSIY+  TN+ +   RKGSE   VDYVAVD K+ K+L QK 
Sbjct: 763  IDSDGLPYVGQIINPNEPYCSIYNDITNTSKPKYRKGSEPAIVDYVAVDTKSKKHL-QKV 821

Query: 839  NIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTI 898
            NIRFRH RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTI
Sbjct: 822  NIRFRHPRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTI 881

Query: 899  AMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHG 958
            AMLLES+AAKGGSL+G F+DATPFA++V+ +N      E +SLVDELG+ML++ GFN+HG
Sbjct: 882  AMLLESLAAKGGSLNGNFVDATPFASTVRASNAGEAKSEPESLVDELGKMLKSKGFNHHG 941

Query: 959  VEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGI 1018
            VEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTG +DQITRQPIKGRKRGGGI
Sbjct: 942  VEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGPVDQITRQPIKGRKRGGGI 1001

Query: 1019 RFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGL 1078
            RFGEMERDS+LAHGAAYLLHDRLHTCSDYH+ADVCS+CGS+LT T   PQ+R +R+IGGL
Sbjct: 1002 RFGEMERDSMLAHGAAYLLHDRLHTCSDYHIADVCSICGSILT-THYQPQRRIVRDIGGL 1060

Query: 1079 PPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
            PP +APKKV CHACQTSKG+ETVAMPYVFRYLAAELAAMNIK+TL L D
Sbjct: 1061 PPVKAPKKVVCHACQTSKGIETVAMPYVFRYLAAELAAMNIKMTLHLND 1109


>gi|297851416|ref|XP_002893589.1| hypothetical protein ARALYDRAFT_313639 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297339431|gb|EFH69848.1| hypothetical protein ARALYDRAFT_313639 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1188

 Score = 1713 bits (4436), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 823/1179 (69%), Positives = 959/1179 (81%), Gaps = 64/1179 (5%)

Query: 8    DFEPLRELVRHHIESFDYMLDEGLSEMFD------------------------------- 36
            D + L  LV HHIESFDYM  +GL  MF+                               
Sbjct: 15   DLKELHNLVTHHIESFDYMTQKGLDVMFNRIKPVSVYDPNTENELSNILFFMILWLENPV 74

Query: 37   ---------------------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFP 75
                                  CRQAKISYTG  MADV F+Y D    VVR+RF+FGQFP
Sbjct: 75   VFAPQKESFRSTSRKEPLLPFECRQAKISYTGTFMADVCFKYNDG--VVVRDRFDFGQFP 132

Query: 76   VMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSF 135
            +ML ++ C L+GAD +KL+  KE  +EMGGYFILNG+ERVFR VI PK+N+P SM+R+SF
Sbjct: 133  IMLMSKLCSLRGADCRKLLKCKESTSEMGGYFILNGIERVFRCVIAPKRNHPTSMIRNSF 192

Query: 136  RDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVD 195
            RDR+EGYT+KAVV RCVR DQSSVT+KLYYL NGS R+GFW+ G+EYLLPVG+VLKAL +
Sbjct: 193  RDRKEGYTEKAVVTRCVRDDQSSVTVKLYYLRNGSARVGFWIVGREYLLPVGLVLKALTN 252

Query: 196  TNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHF 255
            T D EI+  L CCY E Y +  GA+G+ L+ ER KIIL EV+DL L TR QC +H+G+HF
Sbjct: 253  TCDEEIYESLNCCYSEHYGRGDGAIGTQLIRERAKIILDEVRDLGLFTREQCRKHLGQHF 312

Query: 256  QPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
            QPV+DGL+ ES+  VAE V+RDY+FVHL++++DKFNLLIF++QKL+SLVD TS+ DNPDS
Sbjct: 313  QPVLDGLEKESHPMVAEAVLRDYLFVHLDNDHDKFNLLIFIIQKLYSLVDQTSLPDNPDS 372

Query: 316  LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPS 375
            LQNQEIL+PGH+ITIYLKEKLEDWLRK K L++DE+ N   KF F +LA++KK++ KNP 
Sbjct: 373  LQNQEILVPGHVITIYLKEKLEDWLRKCKSLLKDELLNTSSKFSFESLADVKKLINKNPP 432

Query: 376  KQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
            + IGTSIET+LKTG L TQ+GLDLQQRAGYTVQAERLNFLRF+SFFRAVHRGASFAGLRT
Sbjct: 433  RSIGTSIETLLKTGALKTQSGLDLQQRAGYTVQAERLNFLRFLSFFRAVHRGASFAGLRT 492

Query: 436  TSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV 495
            T+VRKLLPESWGFLCPVHTPDG PCGLLNHMT T R+ S +DS+GNIRDF K+R S++ V
Sbjct: 493  TTVRKLLPESWGFLCPVHTPDGTPCGLLNHMTCTSRITSQFDSKGNIRDFLKIRKSVVEV 552

Query: 496  LIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDD 555
            L G GM+ SLPKLV++GPP V+ VLLDG+VVG + S+ + KVV++LRRLKV A SVIP+D
Sbjct: 553  LTGAGMVSSLPKLVRAGPPKVIHVLLDGQVVGTLSSNLVTKVVSYLRRLKVEAPSVIPED 612

Query: 556  LEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPD 615
            LEVGYVP+S+GG+YPGLYL + P +F+RPV+NIS+PSE   NIELIGPFEQVFMEI CPD
Sbjct: 613  LEVGYVPISMGGSYPGLYLASCPARFIRPVKNISIPSE---NIELIGPFEQVFMEISCPD 669

Query: 616  GGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALK 675
            GG+GGR N+ PATHEEIHPTGM+SVVANLTP+SDHNQSPRNMYQCQMAKQTM +S QAL+
Sbjct: 670  GGNGGRNNSSPATHEEIHPTGMISVVANLTPWSDHNQSPRNMYQCQMAKQTMAYSTQALQ 729

Query: 676  FRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSV 735
            FRADQK+YHLQTPQ+P+VRT TYT Y IDE PTGTNAIVAVLA+TG+DMEDAMILNKSSV
Sbjct: 730  FRADQKIYHLQTPQSPVVRTKTYTTYSIDENPTGTNAIVAVLAHTGFDMEDAMILNKSSV 789

Query: 736  DRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGE 795
            +RGMCHGQIYQTE IDLSD  ++ D G K FRR+   KS HS ID+DGLPYVGQ I+P E
Sbjct: 790  ERGMCHGQIYQTENIDLSDQNSRYDSGHKSFRRSTTDKSDHSRIDADGLPYVGQKIYPDE 849

Query: 796  PYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFS 855
            PYC IYD+ T   R    KG++ V VD+V+VDMK SK  PQKANIRFRH RNPIIGDKFS
Sbjct: 850  PYCRIYDEVTGKQRLMKGKGTDPVIVDFVSVDMK-SKKHPQKANIRFRHARNPIIGDKFS 908

Query: 856  SRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGK 915
            SRHGQKGVCSQLWPDI+MPF+GVTGMRPDLIINPHAFPSRMTIAMLLES+AAKGGSLHGK
Sbjct: 909  SRHGQKGVCSQLWPDIEMPFNGVTGMRPDLIINPHAFPSRMTIAMLLESIAAKGGSLHGK 968

Query: 916  FMDATPFANSVKKTNGDTGTDESKS--LVDELGEMLRTCGFNYHGVEVLYSGVYGTELTC 973
            F+DATPF ++VKKTNG+    ESKS  LVD+LG ML+  GFNY+G E LYSG  G EL C
Sbjct: 969  FVDATPFRDAVKKTNGE---KESKSSLLVDDLGSMLKEKGFNYYGTETLYSGSLGVELKC 1025

Query: 974  EIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGA 1033
            EIF+GPVYYQRLRHMVSDKFQVRSTG +DQ+T QPIKGRKRGGGIRFGEMERDSLLAHGA
Sbjct: 1026 EIFMGPVYYQRLRHMVSDKFQVRSTGQVDQLTHQPIKGRKRGGGIRFGEMERDSLLAHGA 1085

Query: 1034 AYLLHDRLHTCSDYHVADVCSLCGSVLTATFIH-PQKRAIREIGGLPPARAPKKVTCHAC 1092
            +YLLHDRLHT SD+H+ADVCSLCGS+LT++ ++  QK+ I+  G LPP R PKKVTCH+C
Sbjct: 1086 SYLLHDRLHTSSDHHIADVCSLCGSLLTSSVVNVQQKKLIKVNGKLPPGRTPKKVTCHSC 1145

Query: 1093 QTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGDGATA 1131
             TSKGMETVAMPYVFRYLAAELA+MNIK+TLQL D   A
Sbjct: 1146 GTSKGMETVAMPYVFRYLAAELASMNIKMTLQLSDRGVA 1184


>gi|79356046|ref|NP_564341.2| nuclear RNA polymerase A2 [Arabidopsis thaliana]
 gi|332193031|gb|AEE31152.1| nuclear RNA polymerase A2 [Arabidopsis thaliana]
          Length = 1178

 Score = 1709 bits (4425), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 816/1168 (69%), Positives = 963/1168 (82%), Gaps = 58/1168 (4%)

Query: 8    DFEPLRELVRHHIESFDYMLDEGLSEMFD------------------------------- 36
            DF+ L  LV HHIESFDYM  +GL  MF+                               
Sbjct: 15   DFKELHNLVTHHIESFDYMTLKGLDVMFNRIKPVSVYDPNTENELSIWLENPLVFAPQKE 74

Query: 37   --------------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRR 82
                           CRQAKISYTG  MADV F+Y D    VVR++F+FGQFP+ML ++ 
Sbjct: 75   SFKSTSRKEPLLPFECRQAKISYTGTFMADVCFKYNDG--VVVRDKFDFGQFPIMLMSKL 132

Query: 83   CHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGY 142
            C L+GAD +KL+  KE  +EMGGYFILNG+ERVFR VI PK+N+P SM+R+SFRDR+EGY
Sbjct: 133  CSLKGADCRKLLKCKESTSEMGGYFILNGIERVFRCVIAPKRNHPTSMIRNSFRDRKEGY 192

Query: 143  TDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIF 202
            + KAVV RCVR DQSSVT+KLYYL NGS R+GFW+ G+EYLLPVG+VLKAL ++ D EI+
Sbjct: 193  SSKAVVTRCVRDDQSSVTVKLYYLRNGSARVGFWIVGREYLLPVGLVLKALTNSCDEEIY 252

Query: 203  NHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGL 262
              L CCY E Y +  GA+G+ LV ER KIIL EV+DL L TR QC +H+G+HFQPV+DG+
Sbjct: 253  ESLNCCYSEHYGRGDGAIGTQLVRERAKIILDEVRDLGLFTREQCRKHLGQHFQPVLDGV 312

Query: 263  QSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEIL 322
            + ES   VAE V+RDY+FVHL++++DKFNLLIF++QKL+SLVD TS+ DNPDSLQNQEIL
Sbjct: 313  KKESLSIVAEAVLRDYLFVHLDNDHDKFNLLIFIIQKLYSLVDQTSLPDNPDSLQNQEIL 372

Query: 323  LPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSI 382
            +PGH+ITIYLKEKLE+WLRK K L++DE++N   KF F +LA++KK++ KNP + IGTSI
Sbjct: 373  VPGHVITIYLKEKLEEWLRKCKSLLKDELDNTNSKFSFESLADVKKLINKNPPRSIGTSI 432

Query: 383  ETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLL 442
            ET+LKTG L TQ+GLDLQQRAGYTVQAERLNFLRF+SFFRAVHRGASFAGLRTT+VRKLL
Sbjct: 433  ETLLKTGALKTQSGLDLQQRAGYTVQAERLNFLRFLSFFRAVHRGASFAGLRTTTVRKLL 492

Query: 443  PESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMI 502
            PESWGFLCPVHTPDG PCGLLNHMT T R+ S +DS+GNIRDF K+R S++ VL G GM+
Sbjct: 493  PESWGFLCPVHTPDGTPCGLLNHMTRTSRITSQFDSKGNIRDFLKIRKSVVDVLTGAGMV 552

Query: 503  PSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVP 562
            PSLPKLV++GPP V+ VLLDG+VVG + S+ + KVV+++RRLKV A SVIP+DLEVGYVP
Sbjct: 553  PSLPKLVRAGPPKVIHVLLDGQVVGTLSSNLVTKVVSYIRRLKVEAPSVIPEDLEVGYVP 612

Query: 563  LSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRR 622
             S+GG+YPGLYL + P +F+RPV+NIS+PS+   NIELIGPFEQVFMEI CPDGG+GGR 
Sbjct: 613  TSMGGSYPGLYLASCPARFIRPVKNISIPSD---NIELIGPFEQVFMEISCPDGGNGGRN 669

Query: 623  NAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKL 682
            N+  ATHEEIHPTGM+SVVANLTP+SDHNQSPRNMYQCQMAKQTM +S QAL+FRADQK+
Sbjct: 670  NSSLATHEEIHPTGMISVVANLTPWSDHNQSPRNMYQCQMAKQTMAYSTQALQFRADQKI 729

Query: 683  YHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG 742
            YHLQTPQ+P+VRT TYT Y IDE PTGTNAIVAVLA+TG+DMEDAMILNKSSV+RGMCHG
Sbjct: 730  YHLQTPQSPVVRTKTYTTYSIDENPTGTNAIVAVLAHTGFDMEDAMILNKSSVERGMCHG 789

Query: 743  QIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYD 802
            QIYQTE IDLSD  ++ D G K FRR+ + K+ H  ID+DGLP VGQ ++P EPYCSIYD
Sbjct: 790  QIYQTENIDLSDQNSRFDSGSKSFRRSTN-KAEHFRIDADGLPSVGQKLYPDEPYCSIYD 848

Query: 803  KTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKG 862
            + TN  R   RKG++ V VD+V+VDMK SK  PQ+ANIRFRH RNPIIGDKFSSRHGQKG
Sbjct: 849  EVTNKTRHMKRKGTDPVIVDFVSVDMK-SKKHPQRANIRFRHARNPIIGDKFSSRHGQKG 907

Query: 863  VCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPF 922
            VCSQLWPDIDMPF+GVTGMRPDLIINPHAFPSRMTIAMLLES+AAKGGSLHGKF+DATPF
Sbjct: 908  VCSQLWPDIDMPFNGVTGMRPDLIINPHAFPSRMTIAMLLESIAAKGGSLHGKFVDATPF 967

Query: 923  ANSVKKTNGDTGTDESKS--LVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPV 980
             ++VKKTNG+   +ESKS  LVD+LG ML+  GFN++G E LYSG  G EL CEIF+GPV
Sbjct: 968  RDAVKKTNGE---EESKSSLLVDDLGSMLKEKGFNHYGTETLYSGYLGVELKCEIFMGPV 1024

Query: 981  YYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDR 1040
            YYQRLRHMVSDKFQVRSTG +DQ+T QPIKGRKRGGGIRFGEMERDSLLAHGA+YLLHDR
Sbjct: 1025 YYQRLRHMVSDKFQVRSTGQVDQLTHQPIKGRKRGGGIRFGEMERDSLLAHGASYLLHDR 1084

Query: 1041 LHTCSDYHVADVCSLCGSVLTATFIH-PQKRAIREIGGLPPARAPKKVTCHACQTSKGME 1099
            LHT SD+H+ADVCSLCGS+LT++ ++  QK+ I+EIG LPP R PKKVTC++C+TSKGME
Sbjct: 1085 LHTSSDHHIADVCSLCGSLLTSSVVNVQQKKLIQEIGKLPPGRTPKKVTCYSCKTSKGME 1144

Query: 1100 TVAMPYVFRYLAAELAAMNIKITLQLGD 1127
            TVAMPYVFRYLAAELA+MNIK+TLQL D
Sbjct: 1145 TVAMPYVFRYLAAELASMNIKMTLQLSD 1172


>gi|12324162|gb|AAG52049.1|AC022455_3 DNA-directed RNA polymerase subunit, putative; 8546-1198 [Arabidopsis
            thaliana]
          Length = 1114

 Score = 1674 bits (4334), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 802/1123 (71%), Positives = 945/1123 (84%), Gaps = 32/1123 (2%)

Query: 8    DFEPLRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRE 67
            DF+ L  LV HHIESFDYM  +GL      CRQAKISYTG  MADV F+Y D    VVR+
Sbjct: 15   DFKELHNLVTHHIESFDYMTLKGLD-----CRQAKISYTGTFMADVCFKYNDG--VVVRD 67

Query: 68   RFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYP 127
            +F+FGQFP+ML ++ C L+GAD +KL+  KE  +EMGGYFILNG+ERVFR VI PK+N+P
Sbjct: 68   KFDFGQFPIMLMSKLCSLKGADCRKLLKCKESTSEMGGYFILNGIERVFRCVIAPKRNHP 127

Query: 128  MSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVG 187
             SM+R+SFRDR+EGY+ KAVV RCVR DQSSVT+KLYYL NGS R+GFW+ G+EYLLPVG
Sbjct: 128  TSMIRNSFRDRKEGYSSKAVVTRCVRDDQSSVTVKLYYLRNGSARVGFWIVGREYLLPVG 187

Query: 188  IVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQC 247
            +VLKAL ++ D EI+  L CCY E Y +  GA+G+ LV ER KIIL EV+DL L TR QC
Sbjct: 188  LVLKALTNSCDEEIYESLNCCYSEHYGRGDGAIGTQLVRERAKIILDEVRDLGLFTREQC 247

Query: 248  LQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHT 307
             +H+G+HFQPV+DG        VAE V+RDY+FVHL++++DKFNLLIF++QKL+SLVD T
Sbjct: 248  RKHLGQHFQPVLDG--------VAEAVLRDYLFVHLDNDHDKFNLLIFIIQKLYSLVDQT 299

Query: 308  SVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIK 367
            S+ DNPDSLQNQEIL+PGH+ITIYLKEKLE+WLRK K L++DE++N   KF F +LA++K
Sbjct: 300  SLPDNPDSLQNQEILVPGHVITIYLKEKLEEWLRKCKSLLKDELDNTNSKFSFESLADVK 359

Query: 368  KVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRG 427
            K++ KNP + IGTSIET+LKTG L TQ+GLDLQQRAGYTVQAERLNFLRF+SFFRAVHRG
Sbjct: 360  KLINKNPPRSIGTSIETLLKTGALKTQSGLDLQQRAGYTVQAERLNFLRFLSFFRAVHRG 419

Query: 428  ASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSK 487
            ASFAGLRTT+VRKLLPESWGFLCPVHTPDG PCGLLNHMT T R+ S +DS+GNIRDF K
Sbjct: 420  ASFAGLRTTTVRKLLPESWGFLCPVHTPDGTPCGLLNHMTRTSRITSQFDSKGNIRDFLK 479

Query: 488  MRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVS 547
            +R S++ VL G GM+PSLPKLV++GPP V+ VLLDG+VVG + S+ + KVV+++RRLKV 
Sbjct: 480  IRKSVVDVLTGAGMVPSLPKLVRAGPPKVIHVLLDGQVVGTLSSNLVTKVVSYIRRLKVE 539

Query: 548  AASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQV 607
            A SVIP+DLEVGYVP S+GG+YPGLYL + P +F+RPV+NIS+PS+   NIELIGPFEQV
Sbjct: 540  APSVIPEDLEVGYVPTSMGGSYPGLYLASCPARFIRPVKNISIPSD---NIELIGPFEQV 596

Query: 608  FMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTM 667
               I           + FPATHEEIHPTGM+SVVANLTP+SDHNQSPRNMYQCQMAKQTM
Sbjct: 597  ANPINII------FISTFPATHEEIHPTGMISVVANLTPWSDHNQSPRNMYQCQMAKQTM 650

Query: 668  GFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDA 727
             +S QAL+FRADQK+YHLQTPQ+P+VRT TYT Y IDE PTGTNAIVAVLA+TG+DMEDA
Sbjct: 651  AYSTQALQFRADQKIYHLQTPQSPVVRTKTYTTYSIDENPTGTNAIVAVLAHTGFDMEDA 710

Query: 728  MILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYV 787
            MILNKSSV+RGMCHGQIYQTE IDLSD  ++ D G K FRR+ + K+ H  ID+DGLP V
Sbjct: 711  MILNKSSVERGMCHGQIYQTENIDLSDQNSRFDSGSKSFRRSTN-KAEHFRIDADGLPSV 769

Query: 788  GQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRN 847
            GQ ++P EPYCSIYD+ TN  R   RKG++ V VD+V+VDMK SK  PQ+ANIRFRH RN
Sbjct: 770  GQKLYPDEPYCSIYDEVTNKTRHMKRKGTDPVIVDFVSVDMK-SKKHPQRANIRFRHARN 828

Query: 848  PIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAA 907
            PIIGDKFSSRHGQKGVCSQLWPDIDMPF+GVTGMRPDLIINPHAFPSRMTIAMLLES+AA
Sbjct: 829  PIIGDKFSSRHGQKGVCSQLWPDIDMPFNGVTGMRPDLIINPHAFPSRMTIAMLLESIAA 888

Query: 908  KGGSLHGKFMDATPFANSVKKTNGDTGTDESKS--LVDELGEMLRTCGFNYHGVEVLYSG 965
            KGGSLHGKF+DATPF ++VKKTNG+   +ESKS  LVD+LG ML+  GFN++G E LYSG
Sbjct: 889  KGGSLHGKFVDATPFRDAVKKTNGE---EESKSSLLVDDLGSMLKEKGFNHYGTETLYSG 945

Query: 966  VYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMER 1025
              G EL CEIF+GPVYYQRLRHMVSDKFQVRSTG +DQ+T QPIKGRKRGGGIRFGEMER
Sbjct: 946  YLGVELKCEIFMGPVYYQRLRHMVSDKFQVRSTGQVDQLTHQPIKGRKRGGGIRFGEMER 1005

Query: 1026 DSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIH-PQKRAIREIGGLPPARAP 1084
            DSLLAHGA+YLLHDRLHT SD+H+ADVCSLCGS+LT++ ++  QK+ I+EIG LPP R P
Sbjct: 1006 DSLLAHGASYLLHDRLHTSSDHHIADVCSLCGSLLTSSVVNVQQKKLIQEIGKLPPGRTP 1065

Query: 1085 KKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
            KKVTC++C+TSKGMETVAMPYVFRYLAAELA+MNIK+TLQL D
Sbjct: 1066 KKVTCYSCKTSKGMETVAMPYVFRYLAAELASMNIKMTLQLSD 1108


>gi|9972352|gb|AAG10602.1|AC008030_2 Similar to DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
          Length = 1233

 Score = 1653 bits (4280), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 790/1121 (70%), Positives = 934/1121 (83%), Gaps = 46/1121 (4%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CRQAKISYTG  MADV F+Y D    VVR++F+FGQFP+ML ++ C L+GAD +KL+  K
Sbjct: 122  CRQAKISYTGTFMADVCFKYNDG--VVVRDKFDFGQFPIMLMSKLCSLKGADCRKLLKCK 179

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            E  +EMGGYFILNG+ERVFR VI PK+N+P SM+R+SFRDR+EGY+ KAVV RCVR DQS
Sbjct: 180  ESTSEMGGYFILNGIERVFRCVIAPKRNHPTSMIRNSFRDRKEGYSSKAVVTRCVRDDQS 239

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            SVT+KLYYL NGS R+GFW+ G+EYLLPVG+VLKAL ++ D EI+  L CCY E Y +  
Sbjct: 240  SVTVKLYYLRNGSARVGFWIVGREYLLPVGLVLKALTNSCDEEIYESLNCCYSEHYGRGD 299

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
            GA+G+ LV ER KIIL EV+DL L TR QC +H+G+HFQPV+DG++ ES   VAE V+RD
Sbjct: 300  GAIGTQLVRERAKIILDEVRDLGLFTREQCRKHLGQHFQPVLDGVKKESLSIVAEAVLRD 359

Query: 278  YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
            Y+FVHL++++DKFNLLIF++QKL+SLVD TS+ DNPDSLQNQEIL+PGH+ITIYLKEKLE
Sbjct: 360  YLFVHLDNDHDKFNLLIFIIQKLYSLVDQTSLPDNPDSLQNQEILVPGHVITIYLKEKLE 419

Query: 338  DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
            +WLRK K L++DE++N   KF F +  ++  +        IGTSIET+LKTG L TQ+GL
Sbjct: 420  EWLRKCKSLLKDELDNTNSKFSFESRKSLLILFS-----LIGTSIETLLKTGALKTQSGL 474

Query: 398  DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDG 457
            DLQQRAGYTVQAERLNFLRF+SFFRAVHRGASFAGLRTT+VRKLLPESWGFLCPVHTPDG
Sbjct: 475  DLQQRAGYTVQAERLNFLRFLSFFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDG 534

Query: 458  EPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVL 517
             PCGLLNHMT T R+ S +DS+GNIRDF K+R S++ VL G GM+PSLPKLV++GPP V+
Sbjct: 535  TPCGLLNHMTRTSRITSQFDSKGNIRDFLKIRKSVVDVLTGAGMVPSLPKLVRAGPPKVI 594

Query: 518  SVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTS 577
             VLLDG+VVG + S+ + KVV+++RRLKV A SVIP+DLEVGYVP S+GG+YPGLYL + 
Sbjct: 595  HVLLDGQVVGTLSSNLVTKVVSYIRRLKVEAPSVIPEDLEVGYVPTSMGGSYPGLYLASC 654

Query: 578  PPKFVRPVRNISLPSEESQNIELIGPFEQV----------------------------FM 609
            P +F+RPV+NIS+PS+   NIELIGPFEQV                            FM
Sbjct: 655  PARFIRPVKNISIPSD---NIELIGPFEQVANPINIIFISTFPGIQSNEKKKILPNQVFM 711

Query: 610  EIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGF 669
            EI CPDGG+GGR N+  ATHEEIHPTGM+SVVANLTP+SDHNQSPRNMYQCQMAKQTM +
Sbjct: 712  EISCPDGGNGGRNNSSLATHEEIHPTGMISVVANLTPWSDHNQSPRNMYQCQMAKQTMAY 771

Query: 670  SVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMI 729
            S QAL+FRADQK+YHLQTPQ+P+VRT TYT Y IDE PTGTNAIVAVLA+TG+DMEDAMI
Sbjct: 772  STQALQFRADQKIYHLQTPQSPVVRTKTYTTYSIDENPTGTNAIVAVLAHTGFDMEDAMI 831

Query: 730  LNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQ 789
            LNKSSV+RGMCHGQIYQTE IDLSD  ++ D G K FRR+ + K+ H  ID+DGLP VGQ
Sbjct: 832  LNKSSVERGMCHGQIYQTENIDLSDQNSRFDSGSKSFRRSTN-KAEHFRIDADGLPSVGQ 890

Query: 790  MIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPI 849
             ++P EPYCSIYD+ TN  R   RKG++ V VD+V+VDMK+ K+ PQ+ANIRFRH RNPI
Sbjct: 891  KLYPDEPYCSIYDEVTNKTRHMKRKGTDPVIVDFVSVDMKSKKH-PQRANIRFRHARNPI 949

Query: 850  IGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKG 909
            IGDKFSSRHGQKGVCSQLWPDIDMPF+GVTGMRPDLIINPHAFPSRMTIAMLLES+AAKG
Sbjct: 950  IGDKFSSRHGQKGVCSQLWPDIDMPFNGVTGMRPDLIINPHAFPSRMTIAMLLESIAAKG 1009

Query: 910  GSLHGKFMDATPFANSVKKTNGDTGTDESKS--LVDELGEMLRTCGFNYHGVEVLYSGVY 967
            GSLHGKF+DATPF ++VKKTNG+   +ESKS  LVD+LG ML+  GFN++G E LYSG  
Sbjct: 1010 GSLHGKFVDATPFRDAVKKTNGE---EESKSSLLVDDLGSMLKEKGFNHYGTETLYSGYL 1066

Query: 968  GTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDS 1027
            G EL CEIF+GPVYYQRLRHMVSDKFQVRSTG +DQ+T QPIKGRKRGGGIRFGEMERDS
Sbjct: 1067 GVELKCEIFMGPVYYQRLRHMVSDKFQVRSTGQVDQLTHQPIKGRKRGGGIRFGEMERDS 1126

Query: 1028 LLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIH-PQKRAIREIGGLPPARAPKK 1086
            LLAHGA+YLLHDRLHT SD+H+ADVCSLCGS+LT++ ++  QK+ I+EIG LPP R PKK
Sbjct: 1127 LLAHGASYLLHDRLHTSSDHHIADVCSLCGSLLTSSVVNVQQKKLIQEIGKLPPGRTPKK 1186

Query: 1087 VTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
            VTC++C+TSKGMETVAMPYVFRYLAAELA+MNIK+TLQL D
Sbjct: 1187 VTCYSCKTSKGMETVAMPYVFRYLAAELASMNIKMTLQLSD 1227



 Score = 41.6 bits (96), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 23/36 (63%)

Query: 8  DFEPLRELVRHHIESFDYMLDEGLSEMFDHCRQAKI 43
          DF+ L  LV HHIESFDYM  +GL  MF+  +   +
Sbjct: 15 DFKELHNLVTHHIESFDYMTLKGLDVMFNRIKPVSV 50


>gi|414870913|tpg|DAA49470.1| TPA: hypothetical protein ZEAMMB73_824600 [Zea mays]
          Length = 1162

 Score = 1540 bits (3986), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 745/1154 (64%), Positives = 896/1154 (77%), Gaps = 37/1154 (3%)

Query: 2    ARKKSADFEPLRELVRHHIESFDYMLDEGLSEMFD------------------------- 36
            A  K  D+  LREL R H+ESFDY LD+GL EM +                         
Sbjct: 11   AVAKEGDYSALRELFRPHVESFDYFLDKGLDEMIESIRPMGHVLSPMRGARPGVLPIYPQ 70

Query: 37   -HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
              CRQA+ISY G+   +V FQY +     +R  FNFG  P+ML ++ CHL+GAD  KLV 
Sbjct: 71   EQCRQARISYHGEFKVEVCFQYNEGAQ--IRHTFNFGHLPIMLMSKLCHLRGADPHKLVF 128

Query: 96   LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
              EEA EMGGYFI  G+ER+ R ++L K+NYPM +VR+SF  R  GYTDKAVVIRCV++D
Sbjct: 129  HGEEATEMGGYFICGGMERLVRILVLQKRNYPMGLVRNSFLKRGAGYTDKAVVIRCVQRD 188

Query: 156  QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
            QSSVT+KLYY+LNGS RLGFWL G+E+LLPVGIVLKAL+D +D EIF  LTCCY +K+ +
Sbjct: 189  QSSVTIKLYYILNGSARLGFWLGGREFLLPVGIVLKALIDASDREIFTSLTCCYSDKHGR 248

Query: 216  EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
             KG V + L+ ER +I+L EV++LS+ TR QCL HIG++F+ V++G +++ Y  VAE V+
Sbjct: 249  GKGVVSTQLIGERAQIVLDEVRNLSILTRTQCLVHIGQYFRSVMEGFENDDYITVAEAVL 308

Query: 276  RDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEK 335
            +DYIFVHL +N+DKFNLLIFMLQKL++LVD T+  DNPD+LQ QE LLPGHL T++LK++
Sbjct: 309  KDYIFVHLENNHDKFNLLIFMLQKLYALVDQTASPDNPDALQYQEALLPGHLFTVFLKDR 368

Query: 336  LEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQT 395
            L++WLRK K+LI +E   N K FD  N   I+K + K  +  +G ++E+M+K G + +++
Sbjct: 369  LQEWLRKSKRLILEEAAKN-KGFDLGNALEIRKFLTKY-TTSVGRAVESMIKVGNVNSRS 426

Query: 396  GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTP 455
            GLDL QR G T+ AERLNF R+IS FR+VHRG++FA +RTTSVRKLLPESWGFLCPVHTP
Sbjct: 427  GLDLPQREGMTIHAERLNFHRYISHFRSVHRGSAFAKMRTTSVRKLLPESWGFLCPVHTP 486

Query: 456  DGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPA 515
            DGEPCGLLNHMTSTCRV+S+Y+S G I++F +M+  +   L+ VGM P LPK+ ++GPP 
Sbjct: 487  DGEPCGLLNHMTSTCRVSSFYNSEGVIKNFGEMKKLLSAELVRVGMNPVLPKIEQTGPPE 546

Query: 516  VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLF 575
            VL V LDG ++G I S+ IEK V +LR LK+ A S IP+DLEVGYVP S  GA+PGLYLF
Sbjct: 547  VLHVHLDGCILGTIASAMIEKAVNYLRTLKLLAHSGIPEDLEVGYVPPSFNGAFPGLYLF 606

Query: 576  TSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPT 635
            T+P +FVRPVRN+ + S+  Q+IELIGPFEQ FMEIRCPDGGDGGR+  FPATHEEIHPT
Sbjct: 607  TNPARFVRPVRNLFILSDGKQSIELIGPFEQAFMEIRCPDGGDGGRQEPFPATHEEIHPT 666

Query: 636  GMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRT 695
             +LSVVANLTP+SDHNQSPRNMYQCQMAKQTMGF  QALKFR D K +HLQTPQTPIVRT
Sbjct: 667  AILSVVANLTPWSDHNQSPRNMYQCQMAKQTMGFCGQALKFRTDVKAFHLQTPQTPIVRT 726

Query: 696  NTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD 755
             TYTKY +DE+P+GTNAIVAVL+YTGYDMEDAMILNKS+V+RGM  G IYQTE IDLS  
Sbjct: 727  GTYTKYCMDEFPSGTNAIVAVLSYTGYDMEDAMILNKSAVERGMFRGHIYQTECIDLSTK 786

Query: 756  GNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKG 815
                D   + F ++   +   +VIDSDGLP +GQ +HP E Y S+++  TN  R    KG
Sbjct: 787  SR--DNVPETFAKSILTRDTSNVIDSDGLPRLGQAVHPNEQYYSVHNSLTNVIRPVKLKG 844

Query: 816  SESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPF 875
            +E  F+DYVAV+   SK   QKANIR R  RNPIIGDKFSSRHGQKGVCSQLWPDIDMPF
Sbjct: 845  TEPAFIDYVAVNGTGSKCGLQKANIRLRRVRNPIIGDKFSSRHGQKGVCSQLWPDIDMPF 904

Query: 876  SGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGT 935
            S  TGMRPDLIINPHAFPSRMTIAMLLES+AAK GSLHGKF+DATPFANS+KK   D  +
Sbjct: 905  SANTGMRPDLIINPHAFPSRMTIAMLLESMAAKAGSLHGKFIDATPFANSLKK---DKDS 961

Query: 936  DESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQV 995
            D+  S+VDELG ML + GFNYHG EVLYSGV+GTE+ CEIFIGPVYYQRLRHMVSDKFQV
Sbjct: 962  DKPNSIVDELGPMLASYGFNYHGNEVLYSGVFGTEMDCEIFIGPVYYQRLRHMVSDKFQV 1021

Query: 996  RSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSL 1055
            R+TG +DQITRQPI GRK GGGIRFGEMERD+LLAHG++YLLHDRLH+CSDYH+ADVCS 
Sbjct: 1022 RTTGRIDQITRQPIGGRKHGGGIRFGEMERDALLAHGSSYLLHDRLHSCSDYHIADVCSF 1081

Query: 1056 CGSVLTATFIHP--QKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAE 1113
            CGS+LTAT I    QK+   E+ GLP  R  K   C AC+TSKGMETVAMPYVFRYLAAE
Sbjct: 1082 CGSLLTATMIKSDTQKKVKHEMLGLPTVRPAKNFACQACKTSKGMETVAMPYVFRYLAAE 1141

Query: 1114 LAAMNIKITLQLGD 1127
            LAAMNIK+ L+L +
Sbjct: 1142 LAAMNIKLELRLSN 1155


>gi|357146829|ref|XP_003574126.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 [Brachypodium
            distachyon]
          Length = 1181

 Score = 1514 bits (3921), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 741/1172 (63%), Positives = 900/1172 (76%), Gaps = 57/1172 (4%)

Query: 2    ARKKSADFEPLRELVRHHIESFDYMLDEGLSEMF-------------------------- 35
            A  K  ++  LREL R HIESFDY LDEGL +M                           
Sbjct: 13   AAGKDGEYATLRELYRPHIESFDYFLDEGLDKMLLSIRPMDISHPSSSDTLRISLEKGHL 72

Query: 36   ---------------DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKT 80
                             CRQA+ISY+G+   D  FQ+ + G+P+ R+ FNFG  P+ML +
Sbjct: 73   LPPLRDVRMAKPLYPQECRQARISYSGEFKVDTLFQF-NNGAPM-RQTFNFGHLPIMLMS 130

Query: 81   RRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRRE 140
            + CHL+GADS+KL+   EEA EMGGYFI  G+ER+ R ++L K+NYPM MVR +F  R  
Sbjct: 131  KLCHLRGADSRKLIYHGEEATEMGGYFINGGMERLIRILVLQKRNYPMGMVRGAFEKRGP 190

Query: 141  GYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLE 200
            GYTDKAVVIRCV++DQ+SVT+KLYYL NGS RLGFWL  +E LLPVGIVLKAL+DT+D E
Sbjct: 191  GYTDKAVVIRCVQQDQTSVTVKLYYLQNGSARLGFWLGAREVLLPVGIVLKALIDTSDRE 250

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            IF  LTCCY +KY++ KG V + L+ ER +IIL EV+ LSL TR QCL+HIG++F+  ++
Sbjct: 251  IFASLTCCYSDKYERGKGVVSNQLIGERAQIILDEVRALSLLTRTQCLEHIGQYFRSAME 310

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQE 320
            G + + Y  VAE V++DY+ VHL +N+ KFNLLIFMLQKL++LVD T+  DNPD+LQ QE
Sbjct: 311  GFEKDDYQTVAEAVLKDYVLVHLQNNHAKFNLLIFMLQKLYALVDQTASPDNPDALQYQE 370

Query: 321  ILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGT 380
             LLPG+LIT++LK++++DWLRK K+LI +E   N K F+F N   I+K + K+ S  +G 
Sbjct: 371  ALLPGYLITVFLKDRIQDWLRKSKRLIIEEATKN-KSFEFDNSQEIRKFLCKH-STSVGR 428

Query: 381  SIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRK 440
            +IE+++K GR  +Q+ LDL QR G ++QAERLNF R+IS FR+VHRG++FA +RTT+VRK
Sbjct: 429  AIESLIKIGRANSQSMLDLPQREGMSIQAERLNFHRYISHFRSVHRGSAFAKMRTTTVRK 488

Query: 441  LLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVG 500
            LLPESWGFLCPVHTPDGEPCGLLNHMTS CR++S+Y S G ++DF K++  +L  L+  G
Sbjct: 489  LLPESWGFLCPVHTPDGEPCGLLNHMTSACRISSFYHSEGAMKDFEKIKDRLLAELVRGG 548

Query: 501  MIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGY 560
            MIP  PK+  +GPP VL V LDG +VG I S++IE++V ++RRLK+ A    P+DLEVGY
Sbjct: 549  MIPLSPKMEHTGPPEVLHVHLDGCIVGSIGSAKIEELVNYIRRLKLLAHPATPEDLEVGY 608

Query: 561  VPLSLGGAYPGLYLFTSPPKFVRPVRN-ISLPSEESQNIELIGPFEQVFMEIRCPDGGDG 619
            VPLS+GGAYPGLY FTSP +FVRPV+N +SLP  E  +IELIG FEQ FMEIRCPDGGDG
Sbjct: 609  VPLSIGGAYPGLYFFTSPARFVRPVKNLVSLPDGEP-HIELIGAFEQAFMEIRCPDGGDG 667

Query: 620  GRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRAD 679
            GR+ +FPATHEEIHPT MLSVVANLTP+S+HNQSPRNMYQCQMAKQTMGF  QALKFR D
Sbjct: 668  GRKESFPATHEEIHPTAMLSVVANLTPWSEHNQSPRNMYQCQMAKQTMGFCGQALKFRTD 727

Query: 680  QKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGM 739
             K +HLQTPQ+PIVRT TY KY +DE+P+GTNAIVAVL+YTGYDMEDAMILNKS+VDRGM
Sbjct: 728  VKAFHLQTPQSPIVRTATYKKYHMDEFPSGTNAIVAVLSYTGYDMEDAMILNKSAVDRGM 787

Query: 740  CHGQIYQTETIDLSDDGNKVDRGQ--KLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPY 797
              G IYQTE IDLS       RG   ++F ++  ++   SVIDSDGLP VG+ I P E Y
Sbjct: 788  FRGDIYQTECIDLS----TTRRGSVAEIFAKSSLSRDSSSVIDSDGLPRVGETIVPNEQY 843

Query: 798  CSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSR 857
             S Y+  T + R    KG+E   +DYVAV+  NSK   QK NIR R  RNPIIGDKFSSR
Sbjct: 844  YSTYNTLTGAIRPTRLKGTEPAAIDYVAVNGTNSKGSLQKVNIRLRRKRNPIIGDKFSSR 903

Query: 858  HGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFM 917
            HGQKGVCSQLWPDIDMPFS  TGMRPDLIINPHAFPSRMTIAMLLES+AAK GSLHG F+
Sbjct: 904  HGQKGVCSQLWPDIDMPFSANTGMRPDLIINPHAFPSRMTIAMLLESIAAKAGSLHGNFV 963

Query: 918  DATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFI 977
            DATPFA+SVK+  GD    + KS+VDE+G ML + GFNYHGVEVLYSG++GTELTCEIFI
Sbjct: 964  DATPFASSVKE--GDGNPWKPKSIVDEMGPMLASYGFNYHGVEVLYSGLFGTELTCEIFI 1021

Query: 978  GPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLL 1037
            GPVYYQRLRHMVSDKFQVR+TG +DQ+TRQPI GRK GGGIRFGEMERD+LLAHGA+YLL
Sbjct: 1022 GPVYYQRLRHMVSDKFQVRTTGRIDQVTRQPIGGRKHGGGIRFGEMERDALLAHGASYLL 1081

Query: 1038 HDRLHTCSDYHVADVCSLCGSVLTATFI--HPQKRAIREIGGLPPARAPKKVTCHACQTS 1095
            HDRLH+CSDYH+ADVCSLCGS+LTAT I    Q ++ R + G+   + PK + C ACQT+
Sbjct: 1082 HDRLHSCSDYHIADVCSLCGSLLTATVIKSETQMKSKRNMLGVQTVKPPKNLACQACQTN 1141

Query: 1096 KGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
            KGMETVAMPYVFRYLAAELAAMN+K+ L+L +
Sbjct: 1142 KGMETVAMPYVFRYLAAELAAMNVKLDLRLSN 1173


>gi|414870912|tpg|DAA49469.1| TPA: hypothetical protein ZEAMMB73_824600 [Zea mays]
          Length = 1128

 Score = 1486 bits (3847), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 730/1154 (63%), Positives = 870/1154 (75%), Gaps = 71/1154 (6%)

Query: 2    ARKKSADFEPLRELVRHHIESFDYMLDEGLSEMFD------------------------- 36
            A  K  D+  LREL R H+ESFDY LD+GL EM +                         
Sbjct: 11   AVAKEGDYSALRELFRPHVESFDYFLDKGLDEMIESIRPMGHVLSPMRGARPGVLPIYPQ 70

Query: 37   -HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
              CRQA+ISY G+   +V FQY +     +R  FNFG  P+ML ++ CHL+GAD  KLV 
Sbjct: 71   EQCRQARISYHGEFKVEVCFQYNEGAQ--IRHTFNFGHLPIMLMSKLCHLRGADPHKLVF 128

Query: 96   LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
              EEA EMGGYFI  G+ER+ R ++L K+NYPM +VR+SF  R  GYTDKAVVIRCV++D
Sbjct: 129  HGEEATEMGGYFICGGMERLVRILVLQKRNYPMGLVRNSFLKRGAGYTDKAVVIRCVQRD 188

Query: 156  QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
            QSSVT+KLYY+LNGS RLGFWL G+E+LLPVGIVLKAL+D +D EIF  LTCCY +K+ +
Sbjct: 189  QSSVTIKLYYILNGSARLGFWLGGREFLLPVGIVLKALIDASDREIFTSLTCCYSDKHGR 248

Query: 216  EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
             KG V + L+ ER +I+L EV                                  AE V+
Sbjct: 249  GKGVVSTQLIGERAQIVLDEV----------------------------------AEAVL 274

Query: 276  RDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEK 335
            +DYIFVHL +N+DKFNLLIFMLQKL++LVD T+  DNPD+LQ QE LLPGHL T++LK++
Sbjct: 275  KDYIFVHLENNHDKFNLLIFMLQKLYALVDQTASPDNPDALQYQEALLPGHLFTVFLKDR 334

Query: 336  LEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQT 395
            L++WLRK K+LI +E   N K FD  N   I+K + K  +  +G ++E+M+K G + +++
Sbjct: 335  LQEWLRKSKRLILEEAAKN-KGFDLGNALEIRKFLTKY-TTSVGRAVESMIKVGNVNSRS 392

Query: 396  GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTP 455
            GLDL QR G T+ AERLNF R+IS FR+VHRG++FA +RTTSVRKLLPESWGFLCPVHTP
Sbjct: 393  GLDLPQREGMTIHAERLNFHRYISHFRSVHRGSAFAKMRTTSVRKLLPESWGFLCPVHTP 452

Query: 456  DGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPA 515
            DGEPCGLLNHMTSTCRV+S+Y+S G I++F +M+  +   L+ VGM P LPK+ ++GPP 
Sbjct: 453  DGEPCGLLNHMTSTCRVSSFYNSEGVIKNFGEMKKLLSAELVRVGMNPVLPKIEQTGPPE 512

Query: 516  VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLF 575
            VL V LDG ++G I S+ IEK V +LR LK+ A S IP+DLEVGYVP S  GA+PGLYLF
Sbjct: 513  VLHVHLDGCILGTIASAMIEKAVNYLRTLKLLAHSGIPEDLEVGYVPPSFNGAFPGLYLF 572

Query: 576  TSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPT 635
            T+P +FVRPVRN+ + S+  Q+IELIGPFEQ FMEIRCPDGGDGGR+  FPATHEEIHPT
Sbjct: 573  TNPARFVRPVRNLFILSDGKQSIELIGPFEQAFMEIRCPDGGDGGRQEPFPATHEEIHPT 632

Query: 636  GMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRT 695
             +LSVVANLTP+SDHNQSPRNMYQCQMAKQTMGF  QALKFR D K +HLQTPQTPIVRT
Sbjct: 633  AILSVVANLTPWSDHNQSPRNMYQCQMAKQTMGFCGQALKFRTDVKAFHLQTPQTPIVRT 692

Query: 696  NTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD 755
             TYTKY +DE+P+GTNAIVAVL+YTGYDMEDAMILNKS+V+RGM  G IYQTE IDLS  
Sbjct: 693  GTYTKYCMDEFPSGTNAIVAVLSYTGYDMEDAMILNKSAVERGMFRGHIYQTECIDLSTK 752

Query: 756  GNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKG 815
                D   + F ++   +   +VIDSDGLP +GQ +HP E Y S+++  TN  R    KG
Sbjct: 753  SR--DNVPETFAKSILTRDTSNVIDSDGLPRLGQAVHPNEQYYSVHNSLTNVIRPVKLKG 810

Query: 816  SESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPF 875
            +E  F+DYVAV+   SK   QKANIR R  RNPIIGDKFSSRHGQKGVCSQLWPDIDMPF
Sbjct: 811  TEPAFIDYVAVNGTGSKCGLQKANIRLRRVRNPIIGDKFSSRHGQKGVCSQLWPDIDMPF 870

Query: 876  SGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGT 935
            S  TGMRPDLIINPHAFPSRMTIAMLLES+AAK GSLHGKF+DATPFANS+KK   D  +
Sbjct: 871  SANTGMRPDLIINPHAFPSRMTIAMLLESMAAKAGSLHGKFIDATPFANSLKK---DKDS 927

Query: 936  DESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQV 995
            D+  S+VDELG ML + GFNYHG EVLYSGV+GTE+ CEIFIGPVYYQRLRHMVSDKFQV
Sbjct: 928  DKPNSIVDELGPMLASYGFNYHGNEVLYSGVFGTEMDCEIFIGPVYYQRLRHMVSDKFQV 987

Query: 996  RSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSL 1055
            R+TG +DQITRQPI GRK GGGIRFGEMERD+LLAHG++YLLHDRLH+CSDYH+ADVCS 
Sbjct: 988  RTTGRIDQITRQPIGGRKHGGGIRFGEMERDALLAHGSSYLLHDRLHSCSDYHIADVCSF 1047

Query: 1056 CGSVLTATFIHP--QKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAE 1113
            CGS+LTAT I    QK+   E+ GLP  R  K   C AC+TSKGMETVAMPYVFRYLAAE
Sbjct: 1048 CGSLLTATMIKSDTQKKVKHEMLGLPTVRPAKNFACQACKTSKGMETVAMPYVFRYLAAE 1107

Query: 1114 LAAMNIKITLQLGD 1127
            LAAMNIK+ L+L +
Sbjct: 1108 LAAMNIKLELRLSN 1121


>gi|218184815|gb|EEC67242.1| hypothetical protein OsI_34174 [Oryza sativa Indica Group]
          Length = 1086

 Score = 1467 bits (3798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 708/1125 (62%), Positives = 862/1125 (76%), Gaps = 63/1125 (5%)

Query: 5    KSADFEPLRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPV 64
            K   +  LREL R HI+SFDY +DEGL +M    R                         
Sbjct: 11   KEDQYAALRELYRPHIDSFDYFIDEGLDKMLQSIR------------------------- 45

Query: 65   VRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQ 124
                      PV + ++ CHL+GADS+KL+   EEA EMGGYFI  G+ER+ R +IL K+
Sbjct: 46   ----------PVEITSKLCHLRGADSEKLIFHGEEATEMGGYFICGGMERLVRILILQKR 95

Query: 125  NYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLL 184
            NYPM ++R SF +R  GYTDKAV+IRCV+ DQSSVT+KLYYLLNGS RLGFWL G+E+LL
Sbjct: 96   NYPMGLIRGSFVNRGAGYTDKAVIIRCVQDDQSSVTIKLYYLLNGSARLGFWLGGREFLL 155

Query: 185  PVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTR 244
            PVGIVLKAL+DT+D EIF  LTCCY + Y++ KG V + L+ ER +IIL EV+DLSL TR
Sbjct: 156  PVGIVLKALIDTSDREIFTSLTCCYSDHYERGKGVVSTQLIGERAQIILDEVRDLSLFTR 215

Query: 245  LQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLV 304
             +CL H+G++F+ V++G + + +  VAE V++DYIFVHL +N+DKFNLLIFMLQKL+++V
Sbjct: 216  TECLLHLGKYFRSVMEGFEKDDFETVAEAVLKDYIFVHLQNNHDKFNLLIFMLQKLYAIV 275

Query: 305  DHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLA 364
            D T+  D  D+LQ QE+LLPGHLIT++LK++L+DWLRK K+LI +E   N K FD  +  
Sbjct: 276  DQTASPDKADALQYQEVLLPGHLITVFLKDRLQDWLRKSKRLIVEEATKN-KSFDLNDSQ 334

Query: 365  NIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAV 424
             ++K + K  S  +G +I++M+K G++ +Q+GLDL QR G T+ AERLNF R+IS FR+V
Sbjct: 335  EVRKFLSKT-SAYVGKAIQSMIKVGKVNSQSGLDLPQRDGMTIHAERLNFHRYISHFRSV 393

Query: 425  HRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRD 484
            HRG+SFA +RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCR++S+Y+S G  +D
Sbjct: 394  HRGSSFAKMRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRISSFYNSEGATKD 453

Query: 485  FSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRL 544
            F K++ S++  L+G GM   LP++ ++GPP VL V +DG +VG I S++IE+        
Sbjct: 454  FQKIKMSLIARLVGAGMAQLLPRIERTGPPEVLHVHVDGCIVGSIASAKIEE-------- 505

Query: 545  KVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPF 604
                  VIP+DLEVGYVPLS GGAYPGLYLFT+P +F+RPVR++   S    NIELIGPF
Sbjct: 506  ------VIPEDLEVGYVPLSHGGAYPGLYLFTNPARFLRPVRSLLGLSNGGPNIELIGPF 559

Query: 605  EQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAK 664
            EQ FMEIRCPDGGDGGR   FPATHEEIHPT +LSVVANLTP+SDHNQSPRNMYQCQMAK
Sbjct: 560  EQAFMEIRCPDGGDGGRNKLFPATHEEIHPTAILSVVANLTPWSDHNQSPRNMYQCQMAK 619

Query: 665  QTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDM 724
            QTMGF  QALKFR D K +HLQTPQTPIVRT TY+KY +DE+P+GTNAIVAVL+YTGYDM
Sbjct: 620  QTMGFCGQALKFRTDVKAFHLQTPQTPIVRTATYSKYCMDEFPSGTNAIVAVLSYTGYDM 679

Query: 725  EDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGL 784
            EDAMILNKS+VDRGM  G I+QTE IDLS      D   + F ++  ++   + I+SDGL
Sbjct: 680  EDAMILNKSAVDRGMFRGHIFQTECIDLS--AKSRDNVTEFFCKSNLSRDTTAAIESDGL 737

Query: 785  PYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRH 844
            P +G+ I P E Y S+ +  T + R    KGSE   +DYVAV+  N K+  QKANIR R 
Sbjct: 738  PRIGENIFPNEQYYSVCNNLTGTVRPIKLKGSEPAAIDYVAVNGTNFKDRLQKANIRLRR 797

Query: 845  TRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLES 904
             RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS  TGMRPDLIINPHAFPSRMTIAMLLES
Sbjct: 798  VRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSANTGMRPDLIINPHAFPSRMTIAMLLES 857

Query: 905  VAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYS 964
            +AAK GSL GKF+DATPFA+SVK        + S S+VDELG ML + GFNYHG E+LYS
Sbjct: 858  IAAKAGSLKGKFIDATPFASSVK--------ERSNSIVDELGPMLASYGFNYHGTEILYS 909

Query: 965  GVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEME 1024
            GV+GTE+ CEIF+GPVYYQRLRHMVSDKFQVR+TG +DQITRQPI GRK GGGIRFGEME
Sbjct: 910  GVFGTEMKCEIFLGPVYYQRLRHMVSDKFQVRTTGRIDQITRQPIGGRKYGGGIRFGEME 969

Query: 1025 RDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFI--HPQKRAIREIGGLPPAR 1082
            RD+LLAHGA+YLLHDRLH+CSDYH+ADVCS+CGS+LTAT I    QK+A R++ GLP  +
Sbjct: 970  RDALLAHGASYLLHDRLHSCSDYHIADVCSICGSLLTATVIKSESQKKAKRDMLGLPTVK 1029

Query: 1083 APKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
             PK   C AC+TS+GMETVAMPYVFRYLA+ELAAMNIK+ L+L +
Sbjct: 1030 PPKNFACQACKTSRGMETVAMPYVFRYLASELAAMNIKLELRLSN 1074


>gi|222613075|gb|EEE51207.1| hypothetical protein OsJ_32024 [Oryza sativa Japonica Group]
          Length = 1150

 Score = 1457 bits (3773), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 713/1156 (61%), Positives = 872/1156 (75%), Gaps = 61/1156 (5%)

Query: 5    KSADFEPLRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPV 64
            K   +  LREL R HI+SFDY +DEGL +M    R  +I+   K    +     + G+P 
Sbjct: 11   KEDQYAALRELYRPHIDSFDYFIDEGLDKMLQSIRPVEIT-VPKSPTTLRNILPELGTPK 69

Query: 65   VRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQ 124
                    Q   +L ++ CHL+GADS+KL+   EEA EMGGYFI  G+ER+ R +IL K+
Sbjct: 70   A-SILKKVQIHHILVSKLCHLRGADSEKLIFHGEEATEMGGYFICGGMERLVRILILQKR 128

Query: 125  NYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLL 184
            NYPM ++R SF +R  GYTDKAV+IRCV+ DQSSVT+KLYYLLNGS RLGFWL G+E+LL
Sbjct: 129  NYPMGLIRGSFVNRGAGYTDKAVIIRCVQDDQSSVTIKLYYLLNGSARLGFWLGGREFLL 188

Query: 185  PVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTR 244
            PVGIVLKAL+DT+D EIF  LTCCY + Y++ KG V + L+ ER +IIL EV+DLSL TR
Sbjct: 189  PVGIVLKALIDTSDREIFTSLTCCYSDHYERGKGVVSTQLIGERAQIILDEVRDLSLFTR 248

Query: 245  LQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLV 304
             +CL H+G++F+ V++G + + +  VAE V++DYIFVHL +N+DKFNLLIFMLQKL+++V
Sbjct: 249  TECLLHLGKYFRSVMEGFEKDDFETVAEAVLKDYIFVHLQNNHDKFNLLIFMLQKLYAIV 308

Query: 305  DHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLA 364
            D T+  D  D+LQ QE+LLPGHLIT++LK++L+DWLRK K+LI +E   N K FD  +  
Sbjct: 309  DQTASPDKADALQYQEVLLPGHLITVFLKDRLQDWLRKSKRLIVEEATKN-KSFDLNDFR 367

Query: 365  N-------------------------------IKKVMEKNPSKQIGTSIETMLKTGRLAT 393
            +                               ++K + K  S  +G +I++M+K G++ +
Sbjct: 368  DFILEGQVKGTSRVIETSSGKPCWLMRIGAQEVRKFLSKT-SAYVGKAIQSMIKVGKVNS 426

Query: 394  QTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVH 453
            Q+GLDL QR G T+ AERLNF R+IS FR+VHRG+SFA +RTTSVRKLLPESWGFLCPVH
Sbjct: 427  QSGLDLPQRDGMTIHAERLNFHRYISHFRSVHRGSSFAKMRTTSVRKLLPESWGFLCPVH 486

Query: 454  TPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGP 513
            TPDGEPCGLLNHMTSTCR++S+Y+S G  +DF K++ S++  L+G GM   LP++ ++GP
Sbjct: 487  TPDGEPCGLLNHMTSTCRISSFYNSEGATKDFQKIKMSLIARLVGAGMAQLLPRIERTGP 546

Query: 514  PAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLY 573
            P VL V +DG +VG I S++IE+V              IP+DLEVGYVPLS GGAYPGLY
Sbjct: 547  PEVLHVHVDGCIVGSIASAKIEEV--------------IPEDLEVGYVPLSHGGAYPGLY 592

Query: 574  LFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIH 633
            LFT+P +F+RPVR++   S    NIELIGPFEQ FMEIRCPDGGDGGR   FPATHEEIH
Sbjct: 593  LFTNPARFLRPVRSLLGLSNGGPNIELIGPFEQAFMEIRCPDGGDGGRNKLFPATHEEIH 652

Query: 634  PTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIV 693
            PT +LSVVANLTP+SDHNQSPRNMYQCQMAKQTMGF  QALKFR D K +HLQTPQTPIV
Sbjct: 653  PTAILSVVANLTPWSDHNQSPRNMYQCQMAKQTMGFCGQALKFRTDVKAFHLQTPQTPIV 712

Query: 694  RTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLS 753
            RT TY+KY +DE+P+GTNAIVAVL+YTGYDMEDAMILNKS+VDRGM  G I+QTE IDLS
Sbjct: 713  RTATYSKYCMDEFPSGTNAIVAVLSYTGYDMEDAMILNKSAVDRGMFRGHIFQTECIDLS 772

Query: 754  DDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR 813
                  D   + F ++  ++   + I+SDGLP +G+ I P E Y S+ +  T + R    
Sbjct: 773  --AKSRDNVTEFFCKSNLSRDTTAAIESDGLPRIGENIFPNEQYYSVCNNLTGTVRPIKL 830

Query: 814  KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDM 873
            KGSE   +DYVAV+  N K+  QKANIR R  RNPIIGDKFSSRHGQKGVCSQLWPDIDM
Sbjct: 831  KGSEPAAIDYVAVNGTNFKDRLQKANIRLRRVRNPIIGDKFSSRHGQKGVCSQLWPDIDM 890

Query: 874  PFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDT 933
            PFS  TGMRPDLIINPHAFPSRMTIAMLLES+AAK GSL GKF+DATPFA+SVK      
Sbjct: 891  PFSANTGMRPDLIINPHAFPSRMTIAMLLESIAAKAGSLKGKFIDATPFASSVK------ 944

Query: 934  GTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKF 993
              + S S+VDELG ML + GFNYHG E+LYSGV+GTE+ CEIF+GPVYYQRLRHMVSDKF
Sbjct: 945  --ERSNSIVDELGPMLASYGFNYHGTEILYSGVFGTEMKCEIFLGPVYYQRLRHMVSDKF 1002

Query: 994  QVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVC 1053
            QVR+TG +DQITRQPI GRK GGGIRFGEMERD+LLAHGA+YLLHDRLH+CSDYH+ADVC
Sbjct: 1003 QVRTTGRIDQITRQPIGGRKYGGGIRFGEMERDALLAHGASYLLHDRLHSCSDYHIADVC 1062

Query: 1054 SLCGSVLTATFI--HPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLA 1111
            S+CGS+LTAT I    QK+A R++ GLP  + PK   C AC+TSKGMETVAMPYVFRYLA
Sbjct: 1063 SICGSLLTATVIKSESQKKAKRDMLGLPTVKPPKNFACQACKTSKGMETVAMPYVFRYLA 1122

Query: 1112 AELAAMNIKITLQLGD 1127
            +ELAAMNIK+ L+L +
Sbjct: 1123 SELAAMNIKLELRLSN 1138


>gi|110289329|gb|ABB47823.2| DNA-directed RNA polymerase, beta subunit family protein, expressed
            [Oryza sativa Japonica Group]
          Length = 1044

 Score = 1402 bits (3629), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 676/1058 (63%), Positives = 820/1058 (77%), Gaps = 59/1058 (5%)

Query: 103  MGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLK 162
            MGGYFI  G+ER+ R +IL K+NYPM ++R SF +R  GYTDKAV+IRCV+ DQSSVT+K
Sbjct: 1    MGGYFICGGMERLVRILILQKRNYPMGLIRGSFVNRGAGYTDKAVIIRCVQDDQSSVTIK 60

Query: 163  LYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGS 222
            LYYLLNGS RLGFWL G+E+LLPVGIVLKAL+DT+D EIF  LTCCY + Y++ KG V +
Sbjct: 61   LYYLLNGSARLGFWLGGREFLLPVGIVLKALIDTSDREIFTSLTCCYSDHYERGKGVVST 120

Query: 223  PLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVH 282
             L+ ER +IIL EV+DLSL TR +CL H+G++F+ V++G + + +  VAE V++DYIFVH
Sbjct: 121  QLIGERAQIILDEVRDLSLFTRTECLLHLGKYFRSVMEGFEKDDFETVAEAVLKDYIFVH 180

Query: 283  LNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRK 342
            L +N+DKFNLLIFMLQKL+++VD T+  D  D+LQ QE+LLPGHLIT++LK++L+DWLRK
Sbjct: 181  LQNNHDKFNLLIFMLQKLYAIVDQTASPDKADALQYQEVLLPGHLITVFLKDRLQDWLRK 240

Query: 343  GKKLIQDEIENNGKKFDFFNLAN-------------------------------IKKVME 371
             K+LI +E   N K FD  +  +                               ++K + 
Sbjct: 241  SKRLIVEEATKN-KSFDLNDFRDFILEGQVKGTSRVIETSSGKPCWLMRIGAQEVRKFLS 299

Query: 372  KNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFA 431
            K  S  +G +I++M+K G++ +Q+GLDL QR G T+ AERLNF R+IS FR+VHRG+SFA
Sbjct: 300  KT-SAYVGKAIQSMIKVGKVNSQSGLDLPQRDGMTIHAERLNFHRYISHFRSVHRGSSFA 358

Query: 432  GLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS 491
             +RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCR++S+Y+S G  +DF K++ S
Sbjct: 359  KMRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRISSFYNSEGATKDFQKIKMS 418

Query: 492  ILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV 551
            ++  L+G GM   LP++ ++GPP VL V +DG +VG I S++IE+V              
Sbjct: 419  LIARLVGAGMAQLLPRIERTGPPEVLHVHVDGCIVGSIASAKIEEV-------------- 464

Query: 552  IPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEI 611
            IP+DLEVGYVPLS GGAYPGLYLFT+P +F+RPVR++   S    NIELIGPFEQ FMEI
Sbjct: 465  IPEDLEVGYVPLSHGGAYPGLYLFTNPARFLRPVRSLLGLSNGGPNIELIGPFEQAFMEI 524

Query: 612  RCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSV 671
            RCPDGGDGGR   FPATHEEIHPT +LSVVANLTP+SDHNQSPRNMYQCQMAKQTMGF  
Sbjct: 525  RCPDGGDGGRNKLFPATHEEIHPTAILSVVANLTPWSDHNQSPRNMYQCQMAKQTMGFCG 584

Query: 672  QALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILN 731
            QALKFR D K +HLQTPQTPIVRT TY+KY +DE+P+GTNAIVAVL+YTGYDMEDAMILN
Sbjct: 585  QALKFRTDVKAFHLQTPQTPIVRTATYSKYCMDEFPSGTNAIVAVLSYTGYDMEDAMILN 644

Query: 732  KSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMI 791
            KS+VDRGM  G I+QTE IDLS      D   + F ++  ++   + I+SDGLP +G+ I
Sbjct: 645  KSAVDRGMFRGHIFQTECIDLS--AKSRDNVTEFFCKSNLSRDTTAAIESDGLPRIGENI 702

Query: 792  HPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIG 851
             P E Y S+ +  T + R    KGSE   +DYVAV+  N K+  QKANIR R  RNPIIG
Sbjct: 703  FPNEQYYSVCNNLTGTVRPIKLKGSEPAAIDYVAVNGTNFKDRLQKANIRLRRVRNPIIG 762

Query: 852  DKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGS 911
            DKFSSRHGQKGVCSQLWPDIDMPFS  TGMRPDLIINPHAFPSRMTIAMLLES+AAK GS
Sbjct: 763  DKFSSRHGQKGVCSQLWPDIDMPFSANTGMRPDLIINPHAFPSRMTIAMLLESIAAKAGS 822

Query: 912  LHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTEL 971
            L GKF+DATPFA+SVK        + S S+VDELG ML + GFNYHG E+LYSGV+GTE+
Sbjct: 823  LKGKFIDATPFASSVK--------ERSNSIVDELGPMLASYGFNYHGTEILYSGVFGTEM 874

Query: 972  TCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAH 1031
             CEIF+GPVYYQRLRHMVSDKFQVR+TG +DQITRQPI GRK GGGIRFGEMERD+LLAH
Sbjct: 875  KCEIFLGPVYYQRLRHMVSDKFQVRTTGRIDQITRQPIGGRKYGGGIRFGEMERDALLAH 934

Query: 1032 GAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFI--HPQKRAIREIGGLPPARAPKKVTC 1089
            GA+YLLHDRLH+CSDYH+ADVCS+CGS+LTAT I    QK+A R++ GLP  + PK   C
Sbjct: 935  GASYLLHDRLHSCSDYHIADVCSICGSLLTATVIKSESQKKAKRDMLGLPTVKPPKNFAC 994

Query: 1090 HACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
             AC+TSKGMETVAMPYVFRYLA+ELAAMNIK+ L+L +
Sbjct: 995  QACKTSKGMETVAMPYVFRYLASELAAMNIKLELRLSN 1032


>gi|302825794|ref|XP_002994479.1| hypothetical protein SELMODRAFT_270143 [Selaginella moellendorffii]
 gi|300137562|gb|EFJ04457.1| hypothetical protein SELMODRAFT_270143 [Selaginella moellendorffii]
          Length = 1172

 Score = 1233 bits (3189), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 598/1100 (54%), Positives = 794/1100 (72%), Gaps = 51/1100 (4%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CRQ  +SYTG L   +    LD GS     + + G+ P+MLK+  CHL+G   QKL+SLK
Sbjct: 115  CRQGFLSYTGALNIQL---ILDYGSMTRHHQLSLGKLPIMLKSSLCHLRGLSPQKLISLK 171

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EE  EMGGYFI+ G+ER+ R +I+PK+N+ +++ R++F++R  G++D  +++RCVR DQ+
Sbjct: 172  EEGTEMGGYFIVKGIERIIRMLIVPKRNHIIAIRRNAFQNRGAGFSDIGLMMRCVRPDQT 231

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
              T+KLYYL +G+ RLGF ++ +E+++PVGI+LKA +DT+D EIF  L+  + +  ++ K
Sbjct: 232  GSTIKLYYLHHGTARLGFVIRRQEFVIPVGIILKAFMDTSDREIFEQLSGIHVQGQEQSK 291

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
            GAVGS L+S+R +II+ E Q     TRL CL++I                    E V+R 
Sbjct: 292  GAVGSQLISQRARIIIEETQRQPCLTRLDCLRYI--------------------EDVLRR 331

Query: 278  YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
            ++FVHL++  DKFNLLI ML KLF++VD ++  D+ D+LQ+QE+LLPGHL+ IYLK++LE
Sbjct: 332  FVFVHLDNFRDKFNLLIHMLHKLFAVVDGSASIDSSDTLQHQELLLPGHLMNIYLKDRLE 391

Query: 338  DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
            DWL + K+L+Q E++   ++FD  + A + K++EKN +  IG  IE +L TG + +Q+ +
Sbjct: 392  DWLYRCKRLLQREMQLK-EEFDLSDHAKVLKIVEKNNAVDIGKRIEYLLSTGNIQSQSHM 450

Query: 398  DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDG 457
            DLQQ  G++V AE+LNF RFIS FR+VHRGA FA  RTTSVRKLLPESWGFLCPVHTPDG
Sbjct: 451  DLQQANGFSVVAEKLNFFRFISHFRSVHRGAFFARQRTTSVRKLLPESWGFLCPVHTPDG 510

Query: 458  EPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVL 517
            EPCGLL H++S C++++  D   + +D   +  +I  VL  +GM+   P L  SGPP  L
Sbjct: 511  EPCGLLTHLSSLCKISTDLDQNNHPKDPKVIHRTIATVLAQLGMVSISPLLALSGPPKYL 570

Query: 518  SVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTS 577
            +VLLDG V+G +P   I + V+HLR LKV      P DLE+GYVP +  GAYPGL+L+T+
Sbjct: 571  AVLLDGCVLGYMPVGNIPQTVSHLRSLKV------PIDLEIGYVPCTYAGAYPGLFLYTT 624

Query: 578  PPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRR-NAFPATHEEIHPTG 636
            P +F+RPV+ +     ++  IELI  FEQ +MEI CPDGG+ GR  +A PATH E+HPT 
Sbjct: 625  PSRFLRPVKQL-----DTGAIELISAFEQAYMEIACPDGGNCGRTPSAPPATHIELHPTA 679

Query: 637  MLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTN 696
            MLSVVA+ TP+SDHNQSPRNMYQCQM KQT+GF+ QALKFR D K+Y+LQ PQ+P+ R  
Sbjct: 680  MLSVVASSTPWSDHNQSPRNMYQCQMGKQTLGFASQALKFRTDHKMYNLQNPQSPVARNV 739

Query: 697  TYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDG 756
             Y KY +DE+P GTNA+VAVLAYTG+DMEDAMI+NKSS++RG+ HGQIY+TE +DLS   
Sbjct: 740  NYKKYNMDEFPLGTNAVVAVLAYTGFDMEDAMIMNKSSMERGLAHGQIYKTEHVDLSLLQ 799

Query: 757  NKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGS 816
             K D    LF R    +++H+ +D DGLP++GQ +H G+PYCS+ +  T   + +  K +
Sbjct: 800  KKSDGIVNLFSRPTGKRNIHNFLDVDGLPHIGQTMHNGDPYCSVLNTMTGDAKLHKLKAA 859

Query: 817  ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS 876
            E+V +D V + + + ++  QK  ++FRH RNP+IGDKFSSRHGQKG+ SQLWPDIDMPFS
Sbjct: 860  ENVVIDSV-IAIGHGRDPLQKIAVKFRHDRNPVIGDKFSSRHGQKGILSQLWPDIDMPFS 918

Query: 877  GVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSV--------KK 928
             VTGMRPD+IINPHAFPSRMTI ML+ES+AAK G L G+++D+TPF +S         K 
Sbjct: 919  AVTGMRPDIIINPHAFPSRMTIGMLMESMAAKAGVLRGEYVDSTPFRSSSAALDAKDGKT 978

Query: 929  TNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHM 988
             +G  G D+    + E GE L   GFNYHG EV+YSG+ GTELTCEIFIG VYYQRLRHM
Sbjct: 979  GSGYKGKDKHYPAISEFGEQLAQHGFNYHGTEVMYSGLLGTELTCEIFIGVVYYQRLRHM 1038

Query: 989  VSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYH 1048
            VSDKFQVRS G ++ +TRQP+ GRK GGGIRFGEMERDSLLAHGAAYLLHDRLHT SDYH
Sbjct: 1039 VSDKFQVRSLGAINPVTRQPVGGRKLGGGIRFGEMERDSLLAHGAAYLLHDRLHTSSDYH 1098

Query: 1049 VADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFR 1108
            V DVC+ CGS+L+   +  ++ A+           PKK TC  CQ++ G+  VAMP+VFR
Sbjct: 1099 VGDVCTTCGSLLSTLMVPSKQPAVGA------RNKPKKATCKVCQSNAGVVKVAMPFVFR 1152

Query: 1109 YLAAELAAMNIKITLQLGDG 1128
            YLAAELAAMN+K+TL++   
Sbjct: 1153 YLAAELAAMNVKLTLKVASA 1172


>gi|168042961|ref|XP_001773955.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674799|gb|EDQ61303.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1199

 Score = 1227 bits (3174), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 626/1190 (52%), Positives = 812/1190 (68%), Gaps = 93/1190 (7%)

Query: 3    RKKSADFEPLRELVRHHIESFDYMLDEGLSEMF--------------------------- 35
            +++  D   L +L + H ESFDY ++ GL E                             
Sbjct: 33   KEEELDCSSLYDLTKPHTESFDYFVERGLEEAVRRLQPIELKHPISGTSLRLWVEKPNVS 92

Query: 36   -----------------DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVML 78
                               CR A ++Y G   AD+  Q+ +    VVR   ++G+ PVM+
Sbjct: 93   PPMKDLGSQALDQRLLPSECRLAGLTYRGIFTADICMQWNNG--VVVRHNISYGKMPVMV 150

Query: 79   KTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDR 138
            K+  CHL+G + ++LV+ KEEA EMGGYFI NG ER+ R +I+PK+NY + + R+S+++R
Sbjct: 151  KSSVCHLRGLNQKQLVAAKEEATEMGGYFICNGNERIIRLLIMPKRNYVVGVKRTSYKNR 210

Query: 139  REGYTDKAVVI-RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTN 197
               Y+DK V+I RCVR DQS+VT+++YY+  GS  LGF ++ +E+L+PVGI+LKAL+++N
Sbjct: 211  GPSYSDKGVMISRCVRPDQSAVTMRMYYMNYGSASLGFSVRRQEFLIPVGIILKALIESN 270

Query: 198  DLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQP 257
            + EI+  L     +  K  KGA+GS  VS+R KIIL EV+ LSL TR  CLQ +G     
Sbjct: 271  EYEIYEQLMSIQSDS-KAMKGALGSQFVSQRAKIILEEVRQLSLFTRHDCLQFLG----- 324

Query: 258  VIDGLQSESYY----AVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNP 313
               GL    Y+    +V E V+ DYI VHL++  DKFNLL+FMLQKLF+LVD  +  DN 
Sbjct: 325  ---GL--TCYFLLVKSVGEQVLNDYILVHLDNPLDKFNLLVFMLQKLFALVDGMAAPDNA 379

Query: 314  DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDF-----FNLANIKK 368
            D+LQN EILLPGHL+TI +K++++DWL + +  +  E++    + D        + +++K
Sbjct: 380  DALQNHEILLPGHLLTIVVKDRIQDWLLRVQGQLLKEMKEKPAENDLQQPIDVTVKHVQK 439

Query: 369  VMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGA 428
            V EK P+  +   +E +L TG L +Q+GLDL Q  G+T+ AE+LNFLR++S FR+VHRGA
Sbjct: 440  VFEKVPASDVSKKVEYLLNTGNLVSQSGLDLNQVGGFTLVAEKLNFLRYLSHFRSVHRGA 499

Query: 429  SFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKM 488
             FA LRTT+VRKLLPESWGF+CPVHTPDG PCGLLNH+T+ C+++S  D+RGN +D   +
Sbjct: 500  FFATLRTTTVRKLLPESWGFMCPVHTPDGSPCGLLNHLTAACQISSDLDARGNKKDPLAI 559

Query: 489  RTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSA 548
            R S+ +V++ +G++P LPKL    PP  L+VLLDG V+G + +  I  ++ HLRRLKV  
Sbjct: 560  RKSVTKVMVNLGLVPVLPKLSNMAPPEYLTVLLDGCVIGHLATGAIPSIIEHLRRLKVVD 619

Query: 549  ASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVF 608
             S +P D+E+ Y+P +  G+YPGLYL T+P +F R V+ +        ++ELIGP EQV 
Sbjct: 620  GSEVPADMEIAYIPCTSAGSYPGLYLATTPSRFTRTVKQMF----GDGSLELIGPLEQV- 674

Query: 609  MEIRCPDGGDGGRRNAFPA-THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTM 667
             +  CP    GG     P  THEEI+ T  LSVVA+LTP+SDHNQSPRNMYQCQM KQTM
Sbjct: 675  NQFLCP----GGNEPIGPKPTHEEINATAFLSVVASLTPWSDHNQSPRNMYQCQMGKQTM 730

Query: 668  GFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDA 727
            GF  QAL+ RAD K+Y +QTPQ PI +TN + KY ++++PTGTNAIVAVLAYTG+DMEDA
Sbjct: 731  GFPAQALQCRADNKMYRIQTPQMPIAQTNAWNKYHMNQFPTGTNAIVAVLAYTGFDMEDA 790

Query: 728  MILNKSSVDRGMCHGQIYQTETIDLSD-----DG--NKVDRGQKLFRRNKDAKSLHSVID 780
            MILNKSSV+RG+ +GQ+Y++ETIDL++     DG  N   R   + R  + A    + ID
Sbjct: 791  MILNKSSVERGLHYGQVYKSETIDLTELRQRGDGVTNVFARSGAMARFKEQADKSANFID 850

Query: 781  SDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANI 840
             DGLPYVGQ +  G+PYCS+ +K T   + +  KGSE+  VDYVA     SK+  QK  I
Sbjct: 851  IDGLPYVGQTLTEGDPYCSVVNKMTGQSKISKLKGSEAAIVDYVAAINTGSKDPLQKVTI 910

Query: 841  RFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAM 900
            R RH R P IGDKFSSRHGQKGVCSQLWPD+DMPFS VTGMRPD+IINPHAFPSRMTI M
Sbjct: 911  RTRHPRYPQIGDKFSSRHGQKGVCSQLWPDVDMPFSAVTGMRPDIIINPHAFPSRMTIGM 970

Query: 901  LLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKS-----LVDELGEMLRTCGFN 955
            LLES+AAK G+L GKFM+ATPF  S K+  G  G D +K+       D LG+ +   GFN
Sbjct: 971  LLESMAAKAGALDGKFMNATPFKKSSKE--GGDGKDFAKTGGNDGTADLLGQQMNAHGFN 1028

Query: 956  YHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRG 1015
            YHG EV+YSGV GTE  CEI++G VYYQRLRHMVSDK+QVRS G ++ +TRQP+KGRK G
Sbjct: 1029 YHGTEVMYSGVLGTEFVCEIYLGVVYYQRLRHMVSDKYQVRSMGPVNPVTRQPVKGRKVG 1088

Query: 1016 GGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREI 1075
            GGIRFGEMERDSLLAHGAAYLLHDRLH CSDYH A+VC  CGS+L AT   P  R     
Sbjct: 1089 GGIRFGEMERDSLLAHGAAYLLHDRLHACSDYHTANVCGFCGSLL-ATVPLPTTRGSLGS 1147

Query: 1076 GGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
             GL   +  KK+ C  C TSKG+ETVAMP+VFRYLAAELAAMNIK+T+ L
Sbjct: 1148 LGLGIQQGGKKI-CRVCNTSKGIETVAMPFVFRYLAAELAAMNIKLTMTL 1196


>gi|326504892|dbj|BAK06737.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 978

 Score = 1208 bits (3126), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 596/958 (62%), Positives = 721/958 (75%), Gaps = 50/958 (5%)

Query: 8   DFEPLRELVRHHIESFDYMLDEGLSEMF-------------------------------- 35
           D+  LREL R HIESFDY LDEGL +M                                 
Sbjct: 20  DYATLRELYRPHIESFDYFLDEGLDKMLLSIRPMEITHPSSNTTLRMSLEKGHVLPPMKD 79

Query: 36  ---------DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQ 86
                      CRQ +ISY+G+   +  FQ+ D G+P+ R+ FNFGQ P+ML ++ CHL+
Sbjct: 80  GRLGQPLYPQECRQGRISYSGEFKVEAVFQFND-GAPI-RQTFNFGQLPIMLMSKLCHLR 137

Query: 87  GADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKA 146
           GADS+KL+   EEA EMGGYFI  GLER+ R +IL K+NYPM MVR +F  R  GYTDKA
Sbjct: 138 GADSRKLIYHGEEATEMGGYFISGGLERLIRILILQKRNYPMGMVRGAFIKRGAGYTDKA 197

Query: 147 VVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLT 206
           VV+RCV  DQSSVT+KLYYL NGS RLGFW  G+E LLPVGI+LKAL+DT+D EIF  LT
Sbjct: 198 VVMRCVHHDQSSVTVKLYYLQNGSARLGFWFGGREILLPVGIILKALIDTSDREIFASLT 257

Query: 207 CCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSES 266
           CCY +K ++ KG V + L+ ER +IIL EV+ LSL TR QCL HIG++F+  ++G + + 
Sbjct: 258 CCYSDKRERGKGVVSTQLIGERTQIILDEVRALSLFTRTQCLVHIGKYFRSAMEGFEKDD 317

Query: 267 YYAVAETVIRDYIFVHL-NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPG 325
           Y  VAE VI+DYI VHL NDN+ KFNLLIFMLQKL++LVD T+  DNPD+LQ QE LLPG
Sbjct: 318 YETVAEAVIKDYILVHLQNDNHAKFNLLIFMLQKLYALVDQTTSPDNPDALQFQEALLPG 377

Query: 326 HLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
           HLIT++LK++++DWL+K K+LI +EI  N K F+  +   I+K + K  +  +G +IE +
Sbjct: 378 HLITVFLKDRIQDWLQKSKRLIMEEITKN-KSFELNSSLEIRKFLSKY-TTSVGRAIEAL 435

Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
           +K GR  +Q+ LDL QR G T+QAERLNF R+IS FR+VHRG+SFA +RTT+VRKLLPES
Sbjct: 436 IKVGRANSQSMLDLPQREGMTIQAERLNFHRYISHFRSVHRGSSFAKMRTTTVRKLLPES 495

Query: 446 WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
           WGFLCPVHTPDGEPCGLLNHMTSTCR++S Y+S G I+DF K++  +L  L+  GMIP L
Sbjct: 496 WGFLCPVHTPDGEPCGLLNHMTSTCRISSCYNSEGAIKDFQKIKDKLLVELVRGGMIPLL 555

Query: 506 PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
           PK+  +GPP ++ V LDG +VG I S++IE+VV +LRRLK+ A    P+DLEVGYVPLSL
Sbjct: 556 PKMEHTGPPEIMHVHLDGCIVGSIASAKIEEVVNYLRRLKLLAHPATPEDLEVGYVPLSL 615

Query: 566 GGAYPGLYLFTSPPKFVRPVRN-ISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNA 624
           GGAYPGLYLFTSP +FVRPV+N +SLP  E  +IELIGPFEQ FMEIRCPDGGDGGR+  
Sbjct: 616 GGAYPGLYLFTSPARFVRPVKNLVSLPDGEP-HIELIGPFEQAFMEIRCPDGGDGGRKEK 674

Query: 625 FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
           FPATHEEIHPT +LSVVANLTP+SDHNQSPRNMYQCQMAKQTMGF  QALKFR D K +H
Sbjct: 675 FPATHEEIHPTAILSVVANLTPWSDHNQSPRNMYQCQMAKQTMGFCGQALKFRTDVKAFH 734

Query: 685 LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI 744
           LQTPQ+PIVRT TY KY +DE+P+GTNAIVAVL+YTGYDMEDAMILNKS+VDRGM  G I
Sbjct: 735 LQTPQSPIVRTATYKKYHMDEFPSGTNAIVAVLSYTGYDMEDAMILNKSAVDRGMFRGDI 794

Query: 745 YQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT 804
           +QTE IDLS    + +   ++F ++  +K    VIDSDGLP VG+ + P E Y S+Y+  
Sbjct: 795 FQTECIDLS--AKRTENVPEIFAKSPLSKGTGDVIDSDGLPRVGETVVPYEQYYSVYNTL 852

Query: 805 TNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVC 864
           T + R    KG+E   +DYVA++  NSK   QK NIR R  RNPIIGDKFSSRHGQKGVC
Sbjct: 853 TGAIRPVRLKGTEPAAIDYVALNGTNSKGSLQKVNIRLRRKRNPIIGDKFSSRHGQKGVC 912

Query: 865 SQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPF 922
           SQLWPDIDMPFS  TGMRPDLIINPHAFPSRMTIAMLLES+AAK GS+HGKF+DATPF
Sbjct: 913 SQLWPDIDMPFSANTGMRPDLIINPHAFPSRMTIAMLLESIAAKAGSVHGKFIDATPF 970


>gi|22128702|gb|AAM92814.1| putative DNA-directed RNA polymerase I subunit, 5'-partial [Oryza
            sativa Japonica Group]
          Length = 855

 Score = 1146 bits (2965), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 561/891 (62%), Positives = 672/891 (75%), Gaps = 81/891 (9%)

Query: 270  VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
            VAE V++DYIFVHL +N+DKFNLLIFMLQKL+++VD T+  D  D+LQ QE+LLPGHLIT
Sbjct: 1    VAEAVLKDYIFVHLQNNHDKFNLLIFMLQKLYAIVDQTASPDKADALQYQEVLLPGHLIT 60

Query: 330  IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLAN------------------------ 365
            ++LK++L+DWLRK K+LI +E   N K FD  +  +                        
Sbjct: 61   VFLKDRLQDWLRKSKRLIVEEATKN-KSFDLNDFRDFILEGQVKGTSRVIETSSGKPCWL 119

Query: 366  -------IKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFI 418
                   ++K + K  S  +G +I++M+K G++ +Q+GLDL QR G T+ AERLNF R+I
Sbjct: 120  MRIGAQEVRKFLSKT-SAYVGKAIQSMIKVGKVNSQSGLDLPQRDGMTIHAERLNFHRYI 178

Query: 419  SFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDS 478
            S FR+VHRG+SFA +RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCR++S+Y+S
Sbjct: 179  SHFRSVHRGSSFAKMRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRISSFYNS 238

Query: 479  RGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVV 538
             G  +DF K++ S++  L+G GM   LP++ ++GPP VL V +DG +VG I S++IE+V 
Sbjct: 239  EGATKDFQKIKMSLIARLVGAGMAQLLPRIERTGPPEVLHVHVDGCIVGSIASAKIEEV- 297

Query: 539  AHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNI 598
                         IP+DLEVGYVPLS GGAYPGLYLFT+P +F+RP              
Sbjct: 298  -------------IPEDLEVGYVPLSHGGAYPGLYLFTNPARFLRPA------------- 331

Query: 599  ELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMY 658
                     FMEIRCPDGGDGGR   FPATHEEIHPT +LSVVANLTP+SDHNQSPRNMY
Sbjct: 332  ---------FMEIRCPDGGDGGRNKLFPATHEEIHPTAILSVVANLTPWSDHNQSPRNMY 382

Query: 659  QCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLA 718
            QCQMAKQTMGF  QALKFR D K +HLQTPQTPIVRT TY+KY +DE+P+GTNAIVAVL+
Sbjct: 383  QCQMAKQTMGFCGQALKFRTDVKAFHLQTPQTPIVRTATYSKYCMDEFPSGTNAIVAVLS 442

Query: 719  YTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSV 778
            YTGYDMEDAMILNKS+VDRGM  G I+QTE IDLS      D   + F ++  ++   + 
Sbjct: 443  YTGYDMEDAMILNKSAVDRGMFRGHIFQTECIDLS--AKSRDNVTEFFCKSNLSRDTTAA 500

Query: 779  IDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA 838
            I+SDGLP +G+ I P E Y S+ +  T + R    KGSE   +DYVAV+  N K+  QKA
Sbjct: 501  IESDGLPRIGENIFPNEQYYSVCNNLTGTVRPIKLKGSEPAAIDYVAVNGTNFKDRLQKA 560

Query: 839  NIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTI 898
            NIR R  RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS  TGMRPDLIINPHAFPSRMTI
Sbjct: 561  NIRLRRVRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSANTGMRPDLIINPHAFPSRMTI 620

Query: 899  AMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHG 958
            AMLLES+AAK GSL GKF+DATPFA+SVK        + S S+VDELG ML + GFNYHG
Sbjct: 621  AMLLESIAAKAGSLKGKFIDATPFASSVK--------ERSNSIVDELGPMLASYGFNYHG 672

Query: 959  VEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGI 1018
             E+LYSGV+GTE+ CEIF+GPVYYQRLRHMVSDKFQVR+TG +DQITRQPI GRK GGGI
Sbjct: 673  TEILYSGVFGTEMKCEIFLGPVYYQRLRHMVSDKFQVRTTGRIDQITRQPIGGRKYGGGI 732

Query: 1019 RFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFI--HPQKRAIREIG 1076
            RFGEMERD+LLAHGA+YLLHDRLH+CSDYH+ADVCS+CGS+LTAT I    QK+A R++ 
Sbjct: 733  RFGEMERDALLAHGASYLLHDRLHSCSDYHIADVCSICGSLLTATVIKSESQKKAKRDML 792

Query: 1077 GLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
            GLP  + PK   C AC+TSKGMETVAMPYVFRYLA+ELAAMNIK+ L+L +
Sbjct: 793  GLPTVKPPKNFACQACKTSKGMETVAMPYVFRYLASELAAMNIKLELRLSN 843


>gi|302759705|ref|XP_002963275.1| hypothetical protein SELMODRAFT_405033 [Selaginella moellendorffii]
 gi|300168543|gb|EFJ35146.1| hypothetical protein SELMODRAFT_405033 [Selaginella moellendorffii]
          Length = 1126

 Score = 1088 bits (2813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 548/1098 (49%), Positives = 740/1098 (67%), Gaps = 90/1098 (8%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CRQ  +SYTG L   +    LD GS     + + G+ P+MLK+  CHL+G   QKL+SLK
Sbjct: 108  CRQGFLSYTGALNIQL---ILDYGSMTRYHQLSLGKLPIMLKSSLCHLRGLSPQKLISLK 164

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EE  EMGGYFI+ G+ER+ R +I+PK+N+ +++ R++F++R  G++D  +++RCVR DQ+
Sbjct: 165  EEGTEMGGYFIVKGIERIIRKLIVPKRNHIIAIRRNAFQNRGAGFSDIGLMMRCVRPDQT 224

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
              T+KLYYL +G+ RLGF ++ +E+++PVGI+LKA +DT+D EIF  L+  + +  ++ K
Sbjct: 225  GSTIKLYYLHHGTARLGFVIRRQEFVIPVGIILKAFMDTSDREIFEQLSGIHVQGQEQSK 284

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
            GAVGS L+S+R +II+ E Q     TRL CL++IGE F+  ++ L S S   V E V+R 
Sbjct: 285  GAVGSQLISQRARIIIEETQRQPCLTRLDCLRYIGETFRTPLEALSSMSNAEVGEDVLRR 344

Query: 278  YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
            ++FVHL++  DKFNLLI ML KLF++VD ++  D+ D+LQ+QE+LLPGHL+ IYLK++LE
Sbjct: 345  FVFVHLDNFRDKFNLLIHMLHKLFAVVDGSASIDSSDTLQHQELLLPGHLMNIYLKDRLE 404

Query: 338  DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
            DWL + K+L+Q E++   ++FD  + A + K++EKN +  IG  IE +L TG + +Q+ +
Sbjct: 405  DWLYRCKRLLQREMQLK-EEFDLSDHAKVLKIVEKNNAVDIGKRIEYLLSTGNIQSQSHM 463

Query: 398  DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDG 457
            DLQQ  G++V AE+LNF RF                                        
Sbjct: 464  DLQQANGFSVVAEKLNFFRF---------------------------------------- 483

Query: 458  EPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVL 517
                 ++H  S  R A           F++ RT+ +R L+        P     G P  L
Sbjct: 484  -----ISHFRSVHRGAF----------FARQRTTSVRKLLPESWGFLCPVHTPDGEPCGL 528

Query: 518  SVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTS 577
               L          S + K+   L +        +P DLE+GYVP +  GAYPGL+L+T+
Sbjct: 529  LTHL----------SSLCKISTDLDQNNHPKDPKVPIDLEIGYVPCTYAGAYPGLFLYTT 578

Query: 578  PPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRR-NAFPATHEEIHPTG 636
            P +F+RPV+ +     ++  IELI  FEQ +MEI CPDGG+ GR  +A PATH E+HPT 
Sbjct: 579  PSRFLRPVKQL-----DTGAIELISAFEQAYMEIACPDGGNCGRTPSAPPATHIELHPTA 633

Query: 637  MLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTN 696
            MLSVVA+ TP+SDHNQSPRNMYQCQM KQT+GF+ QALKFR D K+Y+LQ PQ+P+ R  
Sbjct: 634  MLSVVASSTPWSDHNQSPRNMYQCQMGKQTLGFASQALKFRTDHKMYNLQNPQSPVARNV 693

Query: 697  TYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDG 756
             Y KY +DE+P GTNA+VAVLAYTG+DMEDAMI+NKSS++RG+ HGQIY+TE +DLS   
Sbjct: 694  NYKKYNMDEFPLGTNAVVAVLAYTGFDMEDAMIMNKSSMERGLAHGQIYKTEHVDLSLLQ 753

Query: 757  NKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGS 816
             K D    LF R    +++H+ +D DGLP++GQ +H G+PYCS+ +  T   + +  K +
Sbjct: 754  KKSDGIVNLFSRPTGKRNIHNFLDVDGLPHIGQTMHNGDPYCSVLNTMTGDAKLHKLKAA 813

Query: 817  ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS 876
            E+V +D V + + + ++  QK  ++FRH RNP+IGDKFSSRHGQKG+ SQLWPDIDMPFS
Sbjct: 814  ENVVIDSV-IAIGHGRDPLQKIAVKFRHDRNPVIGDKFSSRHGQKGILSQLWPDIDMPFS 872

Query: 877  GVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSV--------KK 928
             VTGMRPD+IINPHAFPSRMTI ML+ES+AAK G L G+++D+TPF +S         K 
Sbjct: 873  AVTGMRPDIIINPHAFPSRMTIGMLMESMAAKAGVLRGEYVDSTPFRSSSAALDAKDGKT 932

Query: 929  TNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHM 988
             +G  G D+    + E GE L   GFNYHG EV+YSG+ GTELTCEIFIG VYYQRLRHM
Sbjct: 933  GSGYKGKDKHYPAISEFGEQLAQHGFNYHGTEVMYSGLLGTELTCEIFIGVVYYQRLRHM 992

Query: 989  VSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYH 1048
            VSDKFQVRS G ++ +TRQP+ GRK GGGIRFGEMERDSLLAHGAAYLLHDRLHT SDYH
Sbjct: 993  VSDKFQVRSLGAINPVTRQPVGGRKLGGGIRFGEMERDSLLAHGAAYLLHDRLHTSSDYH 1052

Query: 1049 VADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFR 1108
            V DVC+ CGS+L+   +  ++ A+           PKK TC  CQ++ G+  VAMP+VFR
Sbjct: 1053 VGDVCTTCGSLLSTLMVPSKQPAVGA------RNKPKKATCKVCQSNAGVVKVAMPFVFR 1106

Query: 1109 YLAAELAAMNIKITLQLG 1126
            YLAAELAAMN+K+TL++ 
Sbjct: 1107 YLAAELAAMNVKLTLKVA 1124


>gi|357479197|ref|XP_003609884.1| DNA-directed RNA polymerase [Medicago truncatula]
 gi|355510939|gb|AES92081.1| DNA-directed RNA polymerase [Medicago truncatula]
          Length = 1341

 Score = 1086 bits (2808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 526/805 (65%), Positives = 634/805 (78%), Gaps = 67/805 (8%)

Query: 8   DFEPLRELVRHHIESFDYMLDEGLSEMFDH------------------------------ 37
           +F+ L+ L + HIESFD++++ G+  +F                                
Sbjct: 24  NFDALKVLFKPHIESFDHLIEAGMETIFKSIKLVVVHPTTFQKLINILFFFFLFSKDGIA 83

Query: 38  --------------------CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVM 77
                               CRQAK++Y+G+  ADV F+Y D    ++RE FNFGQFP+M
Sbjct: 84  KTTRKTLYPFEASFNFLSFICRQAKLTYSGRFTADVCFKY-DDSEAILRENFNFGQFPIM 142

Query: 78  LKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRD 137
           L+++RC+L+    +KLVS KEEA+EMGGYFI+NGLER  R +ILPK+NYPMS VRSSF +
Sbjct: 143 LQSKRCNLRDFPPRKLVSYKEEASEMGGYFIVNGLERCIRPIILPKRNYPMSTVRSSFSE 202

Query: 138 RREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTN 197
           RREGYTDKAVVIRCVR DQ+S+T+KLY+L NGS RLGFW+ G+EY+LPVGI+LKAL+DT 
Sbjct: 203 RREGYTDKAVVIRCVRADQTSLTVKLYHLRNGSARLGFWIHGREYMLPVGILLKALIDTT 262

Query: 198 DLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLT-TRLQCLQHIGEHFQ 256
           D EI+ +LT CY EKY+K KG VG+ LV ER KIIL EV ++S   TRL+CL++IGEHFQ
Sbjct: 263 DREIYANLTSCYSEKYEKGKGVVGTQLVGERAKIILDEVCEVSKKFTRLECLEYIGEHFQ 322

Query: 257 PVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
           P++  L++ES+Y VA+ V+++YIFVHL +N DKFNLLIFMLQKLFSLVD TSV DNPDSL
Sbjct: 323 PIMHELRNESHYTVADDVLKNYIFVHLENNFDKFNLLIFMLQKLFSLVDQTSVPDNPDSL 382

Query: 317 QNQEILLPGHLITIYLKE---------KLEDWLRKGKKLIQDEIENNGK------KFDFF 361
           QNQE+LLPGHLITIYLK          KLE+WL KGK L+ DEI+  GK      KFDF 
Sbjct: 383 QNQEVLLPGHLITIYLKAGRHMLTGLAKLEEWLAKGKTLLLDEIKRGGKIGKIGEKFDFR 442

Query: 362 NLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFF 421
              ++KKV+EKN +  +G +IE+ML TGRLAT   LDL Q +G T+QAERLNFLRF+S F
Sbjct: 443 KFHHVKKVLEKNHASGVGKAIESMLTTGRLATSIPLDLPQTSGLTLQAERLNFLRFLSHF 502

Query: 422 RAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGN 481
           R VHRGA FAGLRTT+VRKLLPESWGFLCPVHTPDG PCGLLNHMT TCR+ S+YDS+G 
Sbjct: 503 RHVHRGALFAGLRTTTVRKLLPESWGFLCPVHTPDGGPCGLLNHMTHTCRITSFYDSQGK 562

Query: 482 IRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHL 541
           ++++ K++ SIL +LI +GM  SLPK+   GPP VL+VLLDG +VG IPS+E+EKVVAH+
Sbjct: 563 VKNYYKIKLSILNILIEIGMTQSLPKIFLPGPPEVLTVLLDGCIVGYIPSTEVEKVVAHI 622

Query: 542 RRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELI 601
           R LKVS+A+VIPDDLEVGYVPLS+GGAYPGLYLFTSP +F+RPVRN+S+PS  ++NIELI
Sbjct: 623 RELKVSSAAVIPDDLEVGYVPLSMGGAYPGLYLFTSPSRFIRPVRNLSIPSNGNENIELI 682

Query: 602 GPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQ 661
           GPFEQVFMEIRCPDGGDGGR+++FPATHEEIHPTGMLSVVANLTP+SDHNQSPRNMYQCQ
Sbjct: 683 GPFEQVFMEIRCPDGGDGGRKSSFPATHEEIHPTGMLSVVANLTPWSDHNQSPRNMYQCQ 742

Query: 662 MAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTG 721
           MAKQTM FS Q ++ RADQKLYHLQTPQTPIVRT+ YT+Y IDE+PTGTNAIVAVLAYTG
Sbjct: 743 MAKQTMAFSSQTIQHRADQKLYHLQTPQTPIVRTSAYTEYNIDEFPTGTNAIVAVLAYTG 802

Query: 722 YDMEDAMILNKSSVDRGMCHGQIYQ 746
           YDMEDAMILNKSSV+RGM HGQIYQ
Sbjct: 803 YDMEDAMILNKSSVERGMFHGQIYQ 827



 Score =  619 bits (1597), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 296/388 (76%), Positives = 335/388 (86%), Gaps = 10/388 (2%)

Query: 744  IYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDK 803
             +QTETIDL++ G++ +R   +FR++   K  HS IDSDGLP+VGQMI P EPYCSIY++
Sbjct: 959  FWQTETIDLTELGSQAERSSTIFRKSNLDKGCHS-IDSDGLPHVGQMIGPDEPYCSIYNE 1017

Query: 804  TTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGV 863
             TN  R   +KG+E  ++D VAVD+K  +   +KANIRFRH RNPIIGDKFSSRHGQKGV
Sbjct: 1018 VTNKTRLIRKKGTEPAYIDCVAVDLKKHR---RKANIRFRHPRNPIIGDKFSSRHGQKGV 1074

Query: 864  CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFA 923
            CSQLWPDIDMPFSG TGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKF DATPF 
Sbjct: 1075 CSQLWPDIDMPFSGNTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFKDATPFR 1134

Query: 924  NSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQ 983
            +SV+  +      +S SLVDELG+ML+  GFNYHG EVLYSGVYGTELTCEIFIGPVYYQ
Sbjct: 1135 SSVEPGS------KSASLVDELGDMLKEKGFNYHGCEVLYSGVYGTELTCEIFIGPVYYQ 1188

Query: 984  RLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHT 1043
            RLRHMVSDK+QVRSTGT+DQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHT
Sbjct: 1189 RLRHMVSDKYQVRSTGTVDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHT 1248

Query: 1044 CSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAM 1103
            CSDYH+ADVCS+CGS+L+ TFI PQKR +R+I G+P  RAP+KVTCHACQTSKGMETVAM
Sbjct: 1249 CSDYHIADVCSICGSMLSTTFIEPQKRPVRDIPGIPVRRAPRKVTCHACQTSKGMETVAM 1308

Query: 1104 PYVFRYLAAELAAMNIKITLQLGDGATA 1131
            PY+FRYLAAELAAMNIK+TL+L +GA  
Sbjct: 1309 PYIFRYLAAELAAMNIKMTLKLSNGANV 1336


>gi|449511582|ref|XP_004163996.1| PREDICTED: probable DNA-directed RNA polymerase I subunit
           RPA2-like, partial [Cucumis sativus]
          Length = 948

 Score = 1066 bits (2757), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/726 (69%), Positives = 597/726 (82%), Gaps = 46/726 (6%)

Query: 5   KSADFEPLRELVRHHIESFDYMLDEGLS---------EMFD------------------- 36
           ++ D+E LREL RHHIESFD+++D GL          E++D                   
Sbjct: 7   ENEDYEALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTNKKLRIWLGKPELYPP 66

Query: 37  ----------------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKT 80
                            CRQAKISYTGK MADV FQY +    V+RE+ NFGQFP+MLK+
Sbjct: 67  QKERNLRTIREALLPYECRQAKISYTGKFMADVCFQYDEKA--VIREKLNFGQFPIMLKS 124

Query: 81  RRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRRE 140
           + CHL+G D +KLVS  EEA+EMGGYF++NGLERV R +I PK+NYP SMVR+SF DRRE
Sbjct: 125 KLCHLRGLDPKKLVSYNEEASEMGGYFVMNGLERVVRLLIAPKRNYPTSMVRNSFSDRRE 184

Query: 141 GYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLE 200
           GYTDKAVVIRCVR+DQSSVT+KLYYL NGS RLGFW+QGKEYLLP+G+VLKAL+DT D E
Sbjct: 185 GYTDKAVVIRCVREDQSSVTVKLYYLRNGSARLGFWVQGKEYLLPIGVVLKALIDTTDHE 244

Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
           I+  LT CY +K+ K KGAVG+ LV ER KIIL EV+DL+L    QCL HIG+HFQPV++
Sbjct: 245 IYASLTSCYSDKHGKSKGAVGTQLVGERAKIILDEVRDLALFDHRQCLDHIGQHFQPVME 304

Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQE 320
           GL  E +  VA+ V++DYIFVHL++N DKFNLLIFM QKLFSL+D TSV DNPDSLQNQ+
Sbjct: 305 GLGKEKFSTVADAVLKDYIFVHLDNNYDKFNLLIFMAQKLFSLIDQTSVPDNPDSLQNQD 364

Query: 321 ILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGT 380
           +LLPG LIT+YLKEKLEDWL+K KKL++DEI N  K F+F +LA++KKVM+KNPSKQ+ +
Sbjct: 365 VLLPGQLITLYLKEKLEDWLQKVKKLLEDEISNPSKNFEFCSLAHVKKVMDKNPSKQVSS 424

Query: 381 SIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRK 440
           ++E MLKTGRL TQTGLDLQQRAG+TVQAERLNFLRF+S FRAVHRGASFAGLRTT+VRK
Sbjct: 425 AVENMLKTGRLVTQTGLDLQQRAGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRK 484

Query: 441 LLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVG 500
           LLPESWGFLCPVHTPDGEPCGLLNH+TSTCR+ S+++S+G +RDF K+RTSIL VLI VG
Sbjct: 485 LLPESWGFLCPVHTPDGEPCGLLNHLTSTCRITSHFNSQGKVRDFYKIRTSILSVLIAVG 544

Query: 501 MIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGY 560
           MIPSLPKLV+ G P  L+VLLDGR+VG I S+E+EK+VAHLRRLKV +  VIPDDLEVGY
Sbjct: 545 MIPSLPKLVQMGLPDFLNVLLDGRIVGYISSNEVEKIVAHLRRLKVLSPHVIPDDLEVGY 604

Query: 561 VPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGG 620
           VPLS+ GAYPGLYLFTSP +FVRPV+N+S+  E++ NIELIGPFEQVFMEIRCPDGGDGG
Sbjct: 605 VPLSISGAYPGLYLFTSPSRFVRPVKNLSISPEDNHNIELIGPFEQVFMEIRCPDGGDGG 664

Query: 621 RRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQ 680
           R++ FPATHEEIHPTGMLSVVANLTP+SDHNQSPRNMYQCQMAKQTM FS+QA+++RADQ
Sbjct: 665 RKDEFPATHEEIHPTGMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIRYRADQ 724

Query: 681 KLYHLQ 686
           KLYHLQ
Sbjct: 725 KLYHLQ 730


>gi|255070151|ref|XP_002507157.1| predicted protein [Micromonas sp. RCC299]
 gi|226522432|gb|ACO68415.1| predicted protein [Micromonas sp. RCC299]
          Length = 1192

 Score =  961 bits (2483), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 521/1201 (43%), Positives = 729/1201 (60%), Gaps = 114/1201 (9%)

Query: 10   EPLRELVRHHIESFDYMLDEGLSEM--------------------------FDH------ 37
            E LR + R+H+ SFDY LD GLS++                          F++      
Sbjct: 20   EALRGVARNHLASFDYFLDHGLSDVVRCLDNISIQPSGAQNTSSSPRFKMWFENISIGRP 79

Query: 38   -------------------CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVML 78
                               CR++  +Y   ++A V + + D G+ + R  F    FPVM+
Sbjct: 80   IREDTTAVRARDPRVFPRECRESSNTYKAPMLATVAWTFGDVGA-IFRREFRICMFPVMV 138

Query: 79   KTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDR 138
             ++ C+L G    +L+   EE  EMGGYFILNG ER+ R ++  +++Y M M R ++  R
Sbjct: 139  ASKVCNLFGFSQDELICRGEEGHEMGGYFILNGNERIIRLLVQQRRHYIMGMKRKAYSSR 198

Query: 139  REGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTND 198
               YT  A  IRC   D+ + T++++Y  +GS RL F  + KEY +P GI+L+AL + +D
Sbjct: 199  GPIYTHYATAIRCSANDEHTSTVRIHYTSDGSARLVFVHRRKEYFVPAGIILRALAEFSD 258

Query: 199  LEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV 258
              +   +        +   G        ER++IIL E     +  ++Q L ++GEHF+  
Sbjct: 259  SVVQAIVA-------RGLTGLGAQVFAIERIRIILGEAATFGIHNKVQALAYLGEHFRAQ 311

Query: 259  IDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQN 318
            +D    E+ + V + +I ++IF+HL  + DKFNL++ M+QKL++LV     +DNPDSL +
Sbjct: 312  LDANPWETNFDVGKRLICEHIFIHLQSDEDKFNLVLLMMQKLYALVAGQCSADNPDSLMH 371

Query: 319  QEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENN-----GKKFDFFNLANIKKVMEKN 373
             EILLPG L+ I+++EKL+D L K K  +  E E N         ++ +   I+ + + N
Sbjct: 372  HEILLPGILMQIFVREKLQDALHKAKIALNREFEENPNHASADDGEWLSQVAIEAITKTN 431

Query: 374  PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
                IG   E  L TG L+++TGL L Q +G+T+ A++LN++R+IS FR+VHRGA FA L
Sbjct: 432  ----IGRLAEYFLATGNLSSRTGLGLTQTSGFTIVADKLNYMRYISHFRSVHRGAYFAEL 487

Query: 434  RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
            RTT+VRKLLPESWGFLCPVHTPDG PCGLLNH+ ++C +    +S G  RD  + R+ +L
Sbjct: 488  RTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLAASCYIHVACESTGEARD--RARSQVL 545

Query: 494  RVLIGVG-MIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVI 552
            +VL   G +I      + S PPA L+V+LDG ++G +  S+ + VV+ LR  KVS ++ +
Sbjct: 546  KVLSSAGALILHGSTSLGSAPPAHLTVMLDGLILGFVADSDAKVVVSALRAAKVSGSNGV 605

Query: 553  PDDLEVGYVPLS---LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFM 609
               LE+ ++PLS    GGA+PGLYLF++  + +RPV       ++++  E IG  EQ FM
Sbjct: 606  SSHLEIAHIPLSSCGYGGAFPGLYLFSTSSRMMRPVIQ-----QQNRITENIGSLEQAFM 660

Query: 610  EIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGF 669
             IRCPDG       A  A HEE  P  +LSVVA+LTP+SD NQSPRNMYQCQMAKQTMG 
Sbjct: 661  SIRCPDGRQKPTCIAEHA-HEENGPGTILSVVASLTPWSDFNQSPRNMYQCQMAKQTMGM 719

Query: 670  SVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMI 729
             + +  +R D K+Y L TPQ P+  T  Y KY +D YP GTNA+VAV+A+TGYDMEDAMI
Sbjct: 720  PLHSFCYRPDTKIYRLHTPQRPVAMTGQYDKYQMDNYPLGTNAVVAVIAHTGYDMEDAMI 779

Query: 730  LNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNK--------DAKSLHSVIDS 781
            +NK +++RG+ H  +Y+TET+ L   G+  + GQ    + K        +       ID+
Sbjct: 780  VNKGAMERGLGHATLYKTETVTLVA-GSDENFGQCNVIQQKLGSPIAFTEKHPFDPDIDT 838

Query: 782  DGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDM-KNSKNLPQ-KAN 839
            DG P  G +   G   CS+ D++T   R +  KGS+ V +D V++   K SK   + K +
Sbjct: 839  DGAPRPGSIKQAGSTLCSVVDRSTGRVRLHKIKGSDHVIIDRVSISSGKASKGQTETKMS 898

Query: 840  IRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIA 899
            +  R  RNPIIGDKFSSRHGQKGV S L P+ D+P+   +G RPD++INPHAFPSRMTI 
Sbjct: 899  VTVRCDRNPIIGDKFSSRHGQKGVLSFLCPEEDLPYIEKSGSRPDILINPHAFPSRMTIG 958

Query: 900  MLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESK--SLVDELGEMLRTCGFNYH 957
            MLLES+A+K G+L G+F+DA+PF             DE+   S   E GEMLR  G+NY 
Sbjct: 959  MLLESMASKAGALDGRFIDASPF---------QAANDETHIISPTREYGEMLRKHGYNYS 1009

Query: 958  GVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGG 1017
            G E + +G+ G     +IF+G VYYQRLRHMVSDKFQVRS G  + +T+QPIKGRK GGG
Sbjct: 1010 GSETMVNGLTGERFDVDIFVGLVYYQRLRHMVSDKFQVRSLGPNNPLTQQPIKGRKAGGG 1069

Query: 1018 IRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGG 1077
            IRFGEMERD+L+AHG++YL+HDRLH CSD HV  +C+ CGS+L A   + Q  A  ++  
Sbjct: 1070 IRFGEMERDALIAHGSSYLIHDRLHACSDRHVTSLCTYCGSLL-APGANIQMAATHQVHA 1128

Query: 1078 LPPARA-----------PKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLG 1126
                             P+KV+C  C T  G+  VA+P+VF+YLAAELAAMNI+I L++G
Sbjct: 1129 SGAGNGQGRLHSFDDIFPRKVSCRVCNTGTGVHNVALPFVFKYLAAELAAMNIRIGLEVG 1188

Query: 1127 D 1127
            D
Sbjct: 1189 D 1189


>gi|384492834|gb|EIE83325.1| hypothetical protein RO3G_08030 [Rhizopus delemar RA 99-880]
          Length = 1150

 Score =  955 bits (2468), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/1095 (45%), Positives = 699/1095 (63%), Gaps = 68/1095 (6%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR+   +Y G+L   + ++  +   PV  +  + G  P+M+++ RC+L+    + L++  
Sbjct: 115  CRERLCTYRGRLQGKLCWRVNNG--PVQSDIRDLGLVPIMIRSNRCNLKDMYPKDLIAHN 172

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EE+ EMGGYFI+NG+E++ R +I+P++N+  ++VR+SF++R   Y+     IRC R+DQ+
Sbjct: 173  EESEEMGGYFIVNGIEKLIRLLIVPRRNHVTAIVRNSFQNRGPTYSTFGCAIRCARRDQT 232

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            ++T  ++YL +G+V   F  + +EYLLP  +V K+L+D +D EIF+ L           +
Sbjct: 233  TLTNTIHYLTDGNVMFRFAWRKQEYLLPAMLVFKSLIDCSDKEIFDALC----------Q 282

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
            G   +  +++R++++L   +  +L TR QCL +IGE F+  +   +  +   + E +++ 
Sbjct: 283  GDTSNTFLTDRIELLLRSFKIYNLFTRDQCLNYIGEKFRVTMGLDEDLTNKEIGEALVKK 342

Query: 278  YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
             IFVHL+ N DKFNLL FM++KL++LV    V+DNPD+ Q+QE+LL GHL T+ +KEK+ 
Sbjct: 343  LIFVHLDSNRDKFNLLAFMIRKLYALVSGECVADNPDAPQHQEVLLGGHLYTMIIKEKIY 402

Query: 338  DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
            DWL+  K  ++ ++  N  K DFFN    +    K  S  IG+ +   L TG L ++TGL
Sbjct: 403  DWLQAVKMQVRTDLRINPAKVDFFNNTYFQNAYRKVNS-DIGSKLSYFLATGNLVSKTGL 461

Query: 398  DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDG 457
            DLQQ +G+T+ AE+LNF R+++ FR +HRGA FA L+TTSVRKLLPE+WGFLCPVHTPDG
Sbjct: 462  DLQQFSGFTIVAEKLNFFRYLAHFRCIHRGAFFAELKTTSVRKLLPEAWGFLCPVHTPDG 521

Query: 458  EPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVL 517
             PCGLLNH+   C+V         I +   ++T I R+L  +G+  S    +  G P   
Sbjct: 522  SPCGLLNHLAHKCKV---------INEPLDIKT-IPRLLASLGISQSFLHTI--GRPGDN 569

Query: 518  SVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTS 577
             V+LDG++VG       EKV   L+  +V+    IP DLE+ +VP + GG YPGLYLF+S
Sbjct: 570  VVMLDGKIVGWCTPKTAEKVAQSLKVWRVNGEKGIPLDLEIAHVPNTYGGEYPGLYLFSS 629

Query: 578  PPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPA--THEEIHPT 635
            P + +RPV+ +      +   ++IG FEQV+M+I C D          P   TH+E  PT
Sbjct: 630  PARMMRPVKYLG-----NGKTDMIGTFEQVYMDIACMDD------EVVPGVTTHQEFTPT 678

Query: 636  GMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRT 695
             +LS++AN TP+SD NQSPRNMYQCQM KQTMG        R D K+Y +Q+ QTP+VRT
Sbjct: 679  NILSIIANQTPFSDFNQSPRNMYQCQMGKQTMGTPSTVFNHRTDNKMYRIQSSQTPVVRT 738

Query: 696  NTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD 755
              Y +YG+D +P G NAIVAV++YTGYDMEDAMILNKS+ +RG  +G +Y++E +DL+  
Sbjct: 739  ELYNEYGLDGWPQGNNAIVAVISYTGYDMEDAMILNKSAHERGFGYGTVYKSEVVDLN-- 796

Query: 756  GNKVDRGQKL-FRRNKD---AKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTN 811
                 RG+ + +R   D    K   + +  DGLP++G  +   +P C   D++T      
Sbjct: 797  -QYRSRGEAITYRFGLDPIKGKKYKNKLGPDGLPHIGAHLVADDPLCCYIDESTGKDVIK 855

Query: 812  SRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPD 870
              KG E  +VD V V   +S N   QK +I+ R TR+P+IGDKFSSRHGQKGVCSQ +P 
Sbjct: 856  KYKGPEDAYVDEVRVLGDDSGNGELQKVHIKLRITRSPVIGDKFSSRHGQKGVCSQKYPA 915

Query: 871  IDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTN 930
            IDMPF+  +GM+PD+IINPHAFPSRMTI M +ES+A K G+LHG   D+TPF        
Sbjct: 916  IDMPFTE-SGMQPDVIINPHAFPSRMTIGMFVESIAGKAGALHGIAQDSTPFK------- 967

Query: 931  GDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVS 990
                 +E  +  D  GE L+  G+NYHG E +YSG+ G E+  +I+IG VYYQRLRHMV+
Sbjct: 968  ----FNEQNTAADYFGEQLKKAGYNYHGNEAMYSGITGEEMKMDIYIGVVYYQRLRHMVN 1023

Query: 991  DKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVA 1050
            DKFQVR+TG +  +T QP+KGRKR GGIRFGEMERDSLLAHG +YLL DRL  CSDY  A
Sbjct: 1024 DKFQVRTTGPVHNLTMQPVKGRKRHGGIRFGEMERDSLLAHGTSYLLQDRLMNCSDYSQA 1083

Query: 1051 DVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYL 1110
             VC LCGS+ +        + +  +G        +   C  C TSKG++ +A+PYVFRYL
Sbjct: 1084 YVCRLCGSLASPICT----KIVSSLGNR------RTYECRTCNTSKGIDLIAIPYVFRYL 1133

Query: 1111 AAELAAMNIKITLQL 1125
              EL +M I++ L +
Sbjct: 1134 TTELMSMGIRLNLGI 1148


>gi|384499993|gb|EIE90484.1| hypothetical protein RO3G_15195 [Rhizopus delemar RA 99-880]
          Length = 1150

 Score =  953 bits (2463), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/1095 (44%), Positives = 700/1095 (63%), Gaps = 68/1095 (6%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR+   +Y G+L   + ++  +   PV  +  + G  P+M+++ RC+L+    + L++  
Sbjct: 115  CRERLCTYRGRLQGKLCWRVNNG--PVQSDIRDLGLVPIMIRSNRCNLKDMYPKDLIAHN 172

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EE+ EMGGYFI+NG+E++ R +I+P++N+  +++R+SF++R   Y+     IRC R+DQ+
Sbjct: 173  EESEEMGGYFIVNGIEKLIRLLIVPRRNHVTAIIRNSFQNRGPTYSTFGCAIRCARRDQT 232

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            ++T  ++YL +G+V   F  + +EYLLP  +V K+L+D +D EIF+ L           +
Sbjct: 233  TLTNTIHYLTDGNVMFRFAWRKQEYLLPAMLVFKSLIDCSDKEIFDALC----------Q 282

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
            G   +  +++R++++L   +  +L TR QCL +IGE F+  +   +  +   + E +++ 
Sbjct: 283  GDTSNTFLTDRIELLLRSFKIYNLFTRDQCLNYIGEKFRVTMGLDEDLTNKEIGEALVKK 342

Query: 278  YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
             IFVHL+ N DKFNLL FM++KL++LV    V+DNPD+ Q+QE+LL GHL T+ +KEK+ 
Sbjct: 343  LIFVHLDSNRDKFNLLAFMIRKLYALVSGECVADNPDAPQHQEVLLGGHLYTMIIKEKIY 402

Query: 338  DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
            DWL+  K  ++ ++  N  K DFFN    +    K  S  IG+ +   L TG L ++TGL
Sbjct: 403  DWLQAVKMQVRTDLRINPAKVDFFNNTYFQNAYRKVNS-DIGSKLSYFLATGNLVSKTGL 461

Query: 398  DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDG 457
            DLQQ +G+T+ AE+LNF R+++ FR +HRGA FA L+TTSVRKLLPE+WGFLCPVHTPDG
Sbjct: 462  DLQQFSGFTIVAEKLNFFRYLAHFRCIHRGAFFAELKTTSVRKLLPEAWGFLCPVHTPDG 521

Query: 458  EPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVL 517
             PCGLLNH+   C+V         I +   ++ +I R+L  +G+  S    +  G P   
Sbjct: 522  SPCGLLNHLAHKCKV---------INEPLDVK-AIPRLLASLGISQSFLHTI--GRPGDN 569

Query: 518  SVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTS 577
             V+LDG++VG       EKV   L+  +V+    IP DLE+ +VP + GG YPGLYLF+S
Sbjct: 570  VVMLDGKIVGWCTPKTAEKVAQSLKVWRVNGEKGIPLDLEIAHVPNTYGGEYPGLYLFSS 629

Query: 578  PPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPA--THEEIHPT 635
            P + +RPV+ +      +   ++IG FEQV+M+I C D          P   TH+E  PT
Sbjct: 630  PARMMRPVKYLG-----NGKTDMIGTFEQVYMDIACMDD------EVVPGVTTHQEFTPT 678

Query: 636  GMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRT 695
             +LS++AN TP+SD NQSPRNMYQCQM KQTMG        R D K+Y +Q+ QTP+VRT
Sbjct: 679  NILSIIANQTPFSDFNQSPRNMYQCQMGKQTMGTPSTVFNHRTDNKMYRIQSSQTPVVRT 738

Query: 696  NTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD 755
              Y +YG+D +P G NAIVAV++YTGYDMEDAMILNKS+ +RG  +G +Y++E +DL+  
Sbjct: 739  ELYNEYGLDGWPQGNNAIVAVISYTGYDMEDAMILNKSAHERGFGYGTVYKSEVVDLN-- 796

Query: 756  GNKVDRGQKL-FRRNKD---AKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTN 811
                 RG+ + +R   D    K   + +  DGLP++G  +   +P C   D++T      
Sbjct: 797  -QYRSRGEAITYRFGLDPIKGKKYKNKLGPDGLPHIGAHLVADDPLCCYIDESTGKDVIK 855

Query: 812  SRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPD 870
              KG E  +VD V V   +S N   QK +I+ R TR+P+IGDKFSSRHGQKGVCSQ +P 
Sbjct: 856  KYKGPEDAYVDEVRVLGDDSGNGELQKVHIKLRITRSPVIGDKFSSRHGQKGVCSQKYPA 915

Query: 871  IDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTN 930
            IDMPF+  +GM+PD+IINPHAFPSRMTI M +ES+A K G+LHG   D+TPF        
Sbjct: 916  IDMPFTE-SGMQPDVIINPHAFPSRMTIGMFVESIAGKAGALHGIAQDSTPFK------- 967

Query: 931  GDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVS 990
                 +E  +  D  GE L+  G+NYHG E +YSG+ G E+  +I+IG VYYQRLRHMV+
Sbjct: 968  ----FNEQNTAADYFGEQLKKAGYNYHGNEAMYSGITGEEMKMDIYIGVVYYQRLRHMVN 1023

Query: 991  DKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVA 1050
            DKFQVR+TG +  +T QP+KGRKR GGIRFGEMERDSLLAHG +YLL DRL  CSDY  A
Sbjct: 1024 DKFQVRTTGPVHNLTMQPVKGRKRHGGIRFGEMERDSLLAHGTSYLLQDRLMNCSDYSQA 1083

Query: 1051 DVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYL 1110
             VC LCGS+ +        + +  +G        +   C +C TSKG++ +A+PYVFRYL
Sbjct: 1084 YVCRLCGSLASPICT----KIVSSLGNR------RTYECRSCNTSKGIDLIAIPYVFRYL 1133

Query: 1111 AAELAAMNIKITLQL 1125
              EL +M I++ L +
Sbjct: 1134 TTELMSMGIRLNLGI 1148


>gi|328770085|gb|EGF80127.1| hypothetical protein BATDEDRAFT_30022 [Batrachochytrium dendrobatidis
            JAM81]
          Length = 1147

 Score =  951 bits (2459), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/1107 (45%), Positives = 683/1107 (61%), Gaps = 80/1107 (7%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR+  ISY  K+   + ++    G P+  E    G  P+M+++ +C+L G    ++V+  
Sbjct: 98   CRERGISYKSKMQIRINWRV--NGGPIQSEICGLGSLPIMVRSLKCNLDGKSPSEMVAHH 155

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            E+A + GGYF++NG+ER+ R +I+P++N+P +++R SF+ R   Y+   +++RCV  DQS
Sbjct: 156  EDADDFGGYFVINGIERLIRLLIVPRRNHPTAIIRPSFQKRGPTYSKFGIIMRCVLPDQS 215

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            + T+ ++Y  +G V L F+ +  EY++PV +V++AL +T+D EIF  +            
Sbjct: 216  AQTITMHYCTDGEVTLRFFHKKIEYMVPVVLVMRALCNTSDFEIFERIIM---------- 265

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
            G   +  + +RV+++L   +  ++    Q L +IG  F  ++D  + +         +R 
Sbjct: 266  GVYTNTFLIDRVELLLRSFRRYAIYNSTQALAYIGSKFAVMLDSPEDQLEVDAGLEFLRR 325

Query: 278  YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
             I VHL D   KF+LLI+MLQKL+SLV   +  DNPDSLQ QE LL GH+ +  +KEKL 
Sbjct: 326  MILVHLTDAKSKFDLLIYMLQKLYSLVSGDTAPDNPDSLQFQETLLAGHMFSALIKEKLA 385

Query: 338  DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPS-KQIGTSIETMLKTGRLATQTG 396
            DWL   K  I  +I+    K DF +   I+K+  K      IG  IE  L TG L + + 
Sbjct: 386  DWLLAIKTTINMDIKKQISKLDFSDKKYIQKLFSKTSGMSDIGKKIEYFLATGNLISSSN 445

Query: 397  LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
            LDLQQ +GYT+ AE+LNF R+IS FR++HRGA FA L+TT+VRKLLPESWGFLCPVHTPD
Sbjct: 446  LDLQQVSGYTIIAEKLNFYRYISHFRSIHRGAFFAELKTTTVRKLLPESWGFLCPVHTPD 505

Query: 457  GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVK--SGPP 514
            G PCGLLNH++ TC +  + D                   I V  IPS+    +  S   
Sbjct: 506  GSPCGLLNHLSHTCEI--FLDK------------------IDVSHIPSIVAAAEFDSREN 545

Query: 515  AVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYL 574
             V+++ LDG+V+G   +S +  +   LR  K+   + +P  LE+GYVP + GG YPGL+L
Sbjct: 546  IVMTIQLDGKVIGWGRTSVVRNIAQTLRDWKIRGINNVPLKLEIGYVPPTKGGQYPGLFL 605

Query: 575  FTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPA--THEEI 632
            F+SP + +RPV+ ++     + + + IGPFEQV+M+I C       + +  P   TH+E 
Sbjct: 606  FSSPARMIRPVKYLA-----TGDTDFIGPFEQVYMDIAC------MKEDVVPGITTHQEF 654

Query: 633  HPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPI 692
            +PT MLSVVANLTP+SD NQSPRNMYQCQM KQ+MG   Q+L  R D KLY LQT Q+PI
Sbjct: 655  NPTDMLSVVANLTPFSDFNQSPRNMYQCQMGKQSMGTPSQSLHHRTDNKLYRLQTGQSPI 714

Query: 693  VRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDL 752
            VR N +  YG+D YP G NA+V V++YTGYDMEDA I+ KSS +RG  +G +Y+ E +DL
Sbjct: 715  VRPNLHNDYGLDGYPNGMNAVVCVISYTGYDMEDASIIAKSSHERGYGYGTVYKGEWVDL 774

Query: 753  SD---DGNKVDRGQKLFRRNKDAKSLHS--------VIDSDGLPYVGQMIHPGEPYCSIY 801
            SD    G+ V         N+   +L           ID DGLP +G  +  G+P  +  
Sbjct: 775  SDFHRQGDIVTHYFGFVAWNESEPNLSEKALARALQFIDLDGLPIIGVRLTRGDPMYAFV 834

Query: 802  DKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQ 860
            D  T        KG E  +VD V +   +S   P QK +IR R  R P+IGDKFSSRHGQ
Sbjct: 835  DDVTGKVTVKEYKGMEDAYVDQVRLIGDDSGKKPLQKIHIRLRIPRPPLIGDKFSSRHGQ 894

Query: 861  KGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDAT 920
            KGV SQ WP IDMPFS  +G+ PD+IINPHAFPSRMTI M +ES+A K G+LHG   DAT
Sbjct: 895  KGVISQKWPSIDMPFSE-SGIIPDVIINPHAFPSRMTIGMFIESLAGKAGALHGYAQDAT 953

Query: 921  PFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPV 980
            PF             +E  +  D  GE LR  GFNYHG E +YSG+ G E   +I+IG V
Sbjct: 954  PFK-----------FNEDHAAGDFFGEELRQAGFNYHGNEPMYSGITGQEFKADIYIGVV 1002

Query: 981  YYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDR 1040
            YYQRLRHMVSDK+QVR+TG +  +T+QP+KGRKR GGIRFGEMERDSLLAHG +YLL DR
Sbjct: 1003 YYQRLRHMVSDKYQVRTTGPVHNLTQQPVKGRKRAGGIRFGEMERDSLLAHGVSYLLKDR 1062

Query: 1041 LHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP--KKVTCHACQTSKGM 1098
            L  CSDY    VCS+CGS+L       Q+RA R  G  P    P  + V C  C T+KG+
Sbjct: 1063 LMNCSDYSQCHVCSICGSILGPI----QRRADRSDG--PERFEPIGRTVECLTCNTNKGI 1116

Query: 1099 ETVAMPYVFRYLAAELAAMNIKITLQL 1125
            E +A+PYVFRYL  EL AMNI++ L +
Sbjct: 1117 EVIAIPYVFRYLCTELVAMNIRLRLDI 1143


>gi|213407890|ref|XP_002174716.1| DNA-directed RNA polymerase I subunit RPA2 [Schizosaccharomyces
            japonicus yFS275]
 gi|212002763|gb|EEB08423.1| DNA-directed RNA polymerase I subunit RPA2 [Schizosaccharomyces
            japonicus yFS275]
          Length = 1170

 Score =  944 bits (2440), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/1128 (44%), Positives = 703/1128 (62%), Gaps = 104/1128 (9%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR+   +Y  +++  ++F +     P   E    G  P+M+++ RCHL+G    +L++ K
Sbjct: 106  CRERLCTYKARMV--LKFSWRVNDGPWQSEMREVGNLPIMVRSNRCHLEGLSPAELIAHK 163

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EE+ EMGGYF++NG+E++ R +ILPK+N+P++++R SF +R   YT   + IRCVR DQS
Sbjct: 164  EESEEMGGYFVVNGIEKIVRMLILPKRNHPVALIRPSFGNRGTMYTQYGISIRCVRPDQS 223

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            S+T  L+YL NG     F  +  EYL+P  ++LKAL++T+D EIF  +     E      
Sbjct: 224  SLTNTLHYLSNGVAMFRFHWRKNEYLIPSMMILKALIETSDKEIFEGIVGQETE------ 277

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
                +  +++RV+++L   +   L+T+ Q LQ++G  F+ V+   +  +   V  T++R 
Sbjct: 278  ----NTFLTDRVELMLRAYKSYGLSTQTQSLQYLGSKFRVVLGLAEDLTDVEVGRTLLRR 333

Query: 278  YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
             + V+L DN DKF +L+FM++KL++LV     +DNPDS Q+QEILL G L    +KEK++
Sbjct: 334  VVLVNLPDNRDKFRMLLFMIRKLYALVAGECCADNPDSPQHQEILLGGFLFAQIIKEKID 393

Query: 338  DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
            DWL   +  IQ ++       DF +   + +V  K  S  IGT ++  L TG L + TGL
Sbjct: 394  DWLTSIRAQIQQDVRRGAAGIDFSDKKYLSRVFSKVNS-DIGTRLQYFLSTGNLVSNTGL 452

Query: 398  DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDG 457
            DLQQ  GYTV AE+LNF RF+S FR VHRGA FA L+TTSVRKLLPE+WGFLCPVHTPDG
Sbjct: 453  DLQQATGYTVVAEKLNFYRFLSHFRMVHRGAFFAELKTTSVRKLLPEAWGFLCPVHTPDG 512

Query: 458  EPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVL 517
             PCGLLNH+ S C + +      NI            +L+ +G+ P  P  V + P  V 
Sbjct: 513  SPCGLLNHLASKCEIVTSPIDVSNIP----------ALLLSLGVDP--PTAVVANPDWV- 559

Query: 518  SVLLDGRVVGVIPSSEIEKVVAHLRRLKVSA-------ASVIPDDLEVGYVPLSLGGAYP 570
            SV LDG++VG       + V A LR++KV           ++P  LE+G VP S GG +P
Sbjct: 560  SVQLDGKIVGWCTHKLAKHVAAVLRQMKVRGDLASDGKTPLVPLSLEIGLVPPSHGGQFP 619

Query: 571  GLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFP--AT 628
            GL+LF+   + VRPV+ ++     +  ++ +GPFEQV+M+I C        R   P   T
Sbjct: 620  GLFLFSEQARMVRPVKYLA-----TGKLDNVGPFEQVYMDIACFP------REIVPKITT 668

Query: 629  HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTP 688
            H E  PT +LS+VAN+TP+SD NQSPRNMYQCQM KQTMG    A+++R D K+Y LQT 
Sbjct: 669  HVEYSPTNVLSIVANMTPFSDFNQSPRNMYQCQMGKQTMGTPGTAIRYRTDNKMYRLQTG 728

Query: 689  QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
            QTPIVR   +  YG+D YP G NA+VAV++YTGYDMEDAMILNKS+ +RG  +G +Y+++
Sbjct: 729  QTPIVRPRLHDSYGLDHYPNGMNAVVAVISYTGYDMEDAMILNKSAHERGFGYGTVYKSQ 788

Query: 749  TIDLSDDGNKVDRGQKLFRR------NKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYD 802
             IDLS+   K  RG+ +         +   +     +D DGLPY+G  +  GEP  + YD
Sbjct: 789  KIDLSE---KRRRGEPVVHHFGFAPGSTPRREWLEKLDMDGLPYIGTKVEDGEPIAAYYD 845

Query: 803  KTTNSWRTNSRKGSESVFVDYVAV---DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHG 859
            ++T      +  G+E  FVD V V   D+ +S+   Q  +I+FR+TR+PIIGDKFSSRHG
Sbjct: 846  ESTGHNFVQTYHGTEPGFVDEVRVLGNDVGDSEC--QVLHIKFRNTRSPIIGDKFSSRHG 903

Query: 860  QKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDA 919
            QKG+CSQ WP +DMPF+  +G++PD+IINPHAFPSRMTI M +ES+A K G+LHG   D+
Sbjct: 904  QKGICSQKWPTVDMPFTE-SGIQPDIIINPHAFPSRMTIGMFIESLAGKAGALHGMAQDS 962

Query: 920  TPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGP 979
            TPF  S           E+++  D  GE L   G+NYHG E +YSG+ G EL  +I+IG 
Sbjct: 963  TPFVFS-----------ETQTAADYFGEQLVKAGYNYHGNEPMYSGITGKELHADIYIGV 1011

Query: 980  VYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHD 1039
            VYYQRLRHMVSDKFQVR+TG +  +TRQP+KGRKR GGIRFGEMERD+++ HGA++L+ D
Sbjct: 1012 VYYQRLRHMVSDKFQVRTTGPIHNLTRQPVKGRKRAGGIRFGEMERDAVIGHGASFLMQD 1071

Query: 1040 RLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHAC-QTSKGM 1098
            RL  CSDY  + VC  CGS+++         +   + G   A    +V C +C + + G+
Sbjct: 1072 RLMNCSDYAQSWVCRDCGSIISPL-------STVNVSG---AANSTEVRCRSCAKPATGL 1121

Query: 1099 ET---------------------VAMPYVFRYLAAELAAMNIKITLQL 1125
            E                      +A+P VF YL AELAAMNIK+ L++
Sbjct: 1122 EDLSETWEDGLGQRFVGGANTTLIALPSVFNYLTAELAAMNIKMMLEV 1169


>gi|395329846|gb|EJF62231.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Dichomitus squalens LYAD-421 SS1]
          Length = 1230

 Score =  939 bits (2426), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 512/1148 (44%), Positives = 708/1148 (61%), Gaps = 108/1148 (9%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
              R+   SY G++ A + +Q  D   PV  +  + G  P+M+++ RC+++G  S  LV  
Sbjct: 131  EARERLTSYRGRMTAKICWQVNDG--PVEVQMRDCGLLPIMVRSARCNVRGMSSADLVKH 188

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
             EE  E GGYFI+NG ER+ R +ILP++++ +S+VR SF +R   YT  AV IRCVR DQ
Sbjct: 189  HEEPEEFGGYFIINGNERLIRYLILPRRHHVISLVRPSFVNRGPSYTPYAVQIRCVRPDQ 248

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
            + VT  L+YL NGS  L F  + +EY++P+ ++LKALV  +D EIF  +     + Y+  
Sbjct: 249  TGVTNTLHYLSNGSAMLRFSWRKQEYVIPIMLILKALVSASDKEIFEGVMM---QDYEDT 305

Query: 217  KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
                    +S+RV+++L   +  SL T  QCLQ++G+ F+ V++  +  +  A+   +I 
Sbjct: 306  -------FLSDRVELLLRSFKMYSLYTGDQCLQYLGDKFRVVVNMPEDWTNQAIGVWLIN 358

Query: 277  DYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
              + VHL +  DKF +L+FML+KLF+LV  +   DNPDS Q+QE+LLPG L  + +KE+L
Sbjct: 359  KVVLVHLQNPRDKFRMLLFMLRKLFALVSKSCSVDNPDSPQHQEVLLPGTLYGMIIKERL 418

Query: 337  EDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
            E+ L   ++ I  ++ N+    DFF+   IKKV+ +  S  IG  +   L TG L + TG
Sbjct: 419  EEALNSFREGIALDVRNSNPAVDFFDKRYIKKVLSRT-SYDIGAKMSNFLATGNLVSPTG 477

Query: 397  LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
            LDLQQ +G+T+ AE+LN++R+IS FR++HRGA FA L+TT+VRKLLPE+WGFLCPVHTPD
Sbjct: 478  LDLQQASGFTIVAEKLNWMRYISHFRSIHRGAFFAELKTTTVRKLLPEAWGFLCPVHTPD 537

Query: 457  GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGV-GMIPSLPKLVKSGPPA 515
            G PCGLLNH++ TCR+ +           S +  + L  L+   GM  +    V      
Sbjct: 538  GSPCGLLNHLSRTCRIVT-----------SPLAVAHLPALLAAHGMTQAFAPSVDGR--R 584

Query: 516  VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLF 575
             L V LDGR++G  PS+  +++   LR  K      +P DLE+G+VP+S GG YPGLYLF
Sbjct: 585  NLCVQLDGRLIGWAPSAVCKQLATSLRIWKTEGKHSVPLDLEIGFVPVSKGGQYPGLYLF 644

Query: 576  TSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEEIHP 634
            +S  + +RPV+ ++   ++      +G FEQV+M+I C P   + G      +TH E  P
Sbjct: 645  SSRSRMMRPVKYLANGRDDQ-----VGSFEQVYMDIACTPAEIEDGV-----STHVEHAP 694

Query: 635  TGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVR 694
            T  LS++ANLTP+SD NQSPRN+YQCQM KQTMG    AL+ R D KLY LQT QTP+VR
Sbjct: 695  TNFLSILANLTPFSDFNQSPRNIYQCQMGKQTMGTPATALQHRTDNKLYRLQTGQTPVVR 754

Query: 695  TNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD 754
               +  YG+D +P GTNAIVAV++YTGYDMEDAMILNKS+ +RG  +G +Y+  T+DL +
Sbjct: 755  PALHNTYGMDSFPNGTNAIVAVISYTGYDMEDAMILNKSAHERGFGYGTVYKAYTVDLQE 814

Query: 755  -DGNKVDRGQKLFR-------RNKDAKSLHS---VIDSDGLPYVGQMIHPGEPYCSIYDK 803
              G++   G            R ++  + H+   ++D+DGLP VG  ++PG+P  +  D 
Sbjct: 815  LTGSRRQTGPPTLHFGVGPEIRMEEGPNQHAAAKLVDADGLPIVGSRLNPGDPIAAYVDD 874

Query: 804  TTNSWRTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQKG 862
            TT   +    KG E  +VD V +   ++ +   QK NI  R TR P+IGDKFSSRHGQKG
Sbjct: 875  TTGRTKFVKYKGDEVAYVDTVRLLGSDAGDQELQKINITLRITRAPVIGDKFSSRHGQKG 934

Query: 863  VCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPF 922
            VCSQ WP IDMPF+  +GM+PD+IINPHAFPSRMTI ML+ES+A K G++HG   DATPF
Sbjct: 935  VCSQKWPAIDMPFTE-SGMQPDVIINPHAFPSRMTIGMLVESMAGKAGAMHGLAQDATPF 993

Query: 923  ANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYY 982
              +           E  + +D  GE L   G+NY+G E +YSG+ G E   +I+IG VYY
Sbjct: 994  QFT-----------EEDTAIDYFGEQLVAAGYNYYGNEPMYSGITGQEFAADIYIGVVYY 1042

Query: 983  QRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLH 1042
            QRLRHMV DKFQVR+ G +D +TRQP+KGRKR GGIRFGEMERD+L+AHG A+LL DRL 
Sbjct: 1043 QRLRHMVLDKFQVRTIGPVDPVTRQPVKGRKRAGGIRFGEMERDALIAHGTAFLLQDRLM 1102

Query: 1043 TCSDYHVADVCSLCGSVLTATF--IHPQKRAIREIGGLPPARAPKKVTCHACQ------- 1093
             CSDY  A VC  CGS+++  +  +   +  I   G L P   P    C  C+       
Sbjct: 1103 NCSDYSTAWVCRTCGSLISLGYDDVTLGEMVIGASGMLKPT-GPGGEYCRVCRAAAEEEE 1161

Query: 1094 ----------------------------------TSKG--METVAMPYVFRYLAAELAAM 1117
                                               SKG  M+ +A+PYVFRYL AELA+M
Sbjct: 1162 TRARQALATGQASATANGHADVRVQIPSQHILGPASKGGDMDIIAVPYVFRYLCAELASM 1221

Query: 1118 NIKITLQL 1125
             IK++L++
Sbjct: 1222 GIKVSLEV 1229


>gi|392568224|gb|EIW61398.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Trametes versicolor FP-101664 SS1]
          Length = 1231

 Score =  939 bits (2426), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 513/1155 (44%), Positives = 708/1155 (61%), Gaps = 123/1155 (10%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
             R+   SY G++M  + +Q  D   PV  E  + G  P+M+++ RC+L+G  S +LV   
Sbjct: 132  ARERLTSYRGRMMVKICWQVNDG--PVEVEMRDCGLLPIMVRSTRCNLRGMSSGELVRHH 189

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EE  E GGYF++NG ER+ R +ILP++++ +S+VR SF +R   YT  AV IRCVR DQ+
Sbjct: 190  EEPEEFGGYFVINGNERLIRYLILPRRHHVISLVRPSFVNRGPSYTPYAVQIRCVRPDQT 249

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            S T  L+YL NGS  L F  + +EY++P+ ++LKALV  +D E+F  +     + Y    
Sbjct: 250  SATNTLHYLSNGSAMLRFSWRKQEYVIPIMLILKALVSASDKEVFEGVMM---QDY---- 302

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
               G   +S+RV+++L   +   L T  QCLQ++G+ F+ V++  +  +  A+   +I  
Sbjct: 303  ---GDTFLSDRVELLLRSFKMYHLYTGDQCLQYLGDKFRIVVNMPEDWTNQAIGVWLINK 359

Query: 278  YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
             + VHL +  DKF +L+FML+KL++LV  +   DNPDS Q+QE+LLPG L  + +KE+LE
Sbjct: 360  VVLVHLQNARDKFRMLLFMLRKLYALVSKSCSVDNPDSPQHQEVLLPGALYGMIIKERLE 419

Query: 338  DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
            + L   ++ I  ++ N+    DF++   IKKV+++  S  IG  +   L TG L T TGL
Sbjct: 420  EALNGFREGIALDVRNSNPAVDFYDKRYIKKVLQRT-SYDIGAKMSNFLATGNLVTPTGL 478

Query: 398  DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDG 457
            DLQQ +G+T+ AE+LN++R+IS FR++HRGA FA L+TT+VRKLLPE+WGFLCP HTPDG
Sbjct: 479  DLQQASGFTIVAEKLNWMRYISHFRSIHRGAFFAELKTTTVRKLLPEAWGFLCPAHTPDG 538

Query: 458  EPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPK---LVKSGPP 514
             PCGLLNH++ TCR                    I+   + V  IP+L     + ++  P
Sbjct: 539  SPCGLLNHLSRTCR--------------------IVTTPLAVSHIPALLAAHGMTQAFAP 578

Query: 515  AV-----LSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAY 569
            +V     L V LDGR++G  P++  +++   LR  K      +P DLE+GYVP+S  G Y
Sbjct: 579  SVDGRRNLCVQLDGRLIGWAPAAVCQQLATSLRIWKTEGKHSVPLDLEIGYVPVSKAGQY 638

Query: 570  PGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPAT 628
            PGLYLF S  + +RPV+ +    ++      +G FEQV+M+I C P   + G      ++
Sbjct: 639  PGLYLFASRSRMMRPVKYVPNGKDDQ-----VGSFEQVYMDIACTPAEIEDGV-----SS 688

Query: 629  HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTP 688
            H E  PT  LS++ANLTP+SD NQSPRN+YQCQM KQTMG    AL+ R D KLY LQT 
Sbjct: 689  HVEHSPTNFLSILANLTPFSDFNQSPRNIYQCQMGKQTMGTPATALQHRTDNKLYRLQTG 748

Query: 689  QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
            QTPIVR   +  YG+D +P GTNAIVAV++YTGYDMEDAMILNKS+ +RG  +G +Y++ 
Sbjct: 749  QTPIVRPMLHNTYGMDSFPNGTNAIVAVISYTGYDMEDAMILNKSAHERGFGYGTVYKSY 808

Query: 749  TIDLSD-DGNK---------VDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYC 798
            T+DL +  G++            G ++    + A      IDSDGLP VG  ++PG+P  
Sbjct: 809  TVDLQELTGSRRIATTPTLHFGFGPEIRTDGEKAHPATLHIDSDGLPCVGARLNPGDPIA 868

Query: 799  SIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSR 857
            +  D TT   +    KG E  +VD V +   ++ +   QK N+  R TR P+IGDKFSSR
Sbjct: 869  AYVDDTTGRTKFAKYKGDEVAYVDTVRLIGSDAGDQELQKINMTLRITRAPVIGDKFSSR 928

Query: 858  HGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFM 917
            HGQKGVCSQ WP IDMPFS  +GM+PD+IINPHAFPSRMTI ML+ES+A K G++HG   
Sbjct: 929  HGQKGVCSQKWPAIDMPFS-ESGMQPDVIINPHAFPSRMTIGMLVESMAGKAGAMHGLAQ 987

Query: 918  DATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFI 977
            DATPF  +           E  + ++  GE L+  G+NY+G E +YSG+ G E   +I+I
Sbjct: 988  DATPFQFT-----------EEDTAIEYFGEQLQAAGYNYYGNEPMYSGITGQEFAADIYI 1036

Query: 978  GPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLL 1037
            G VYYQRLRHMV DKFQVR+TG +D +TRQP+KGRKR GGIRFGEMERD+L+AHG A+LL
Sbjct: 1037 GVVYYQRLRHMVLDKFQVRTTGPVDPVTRQPVKGRKRAGGIRFGEMERDALIAHGTAFLL 1096

Query: 1038 HDRLHTCSDYHVADVCSLCGSVLTATF--IHPQKRAIREIGGLPPARAPKKVTCHACQ-- 1093
             DRL  CSDY  A VC  CGS+++  +  +   +  I   G L P   P    C AC+  
Sbjct: 1097 QDRLMNCSDYSTAWVCRTCGSLISLGYDDVSLGEMVIGANGSLKPT-GPGGEYCRACRAA 1155

Query: 1094 -----------------------------------------TSKG--METVAMPYVFRYL 1110
                                                      SKG  M+ +A+PYVFRYL
Sbjct: 1156 AEEEDTRARQALANGGPARTAANGRSADVRVAIGSQFVLGSASKGGDMDIIAVPYVFRYL 1215

Query: 1111 AAELAAMNIKITLQL 1125
             AELA+M IKI+L++
Sbjct: 1216 CAELASMGIKISLEV 1230


>gi|110740195|dbj|BAF01996.1| putative DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
          Length = 578

 Score =  936 bits (2420), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/580 (76%), Positives = 509/580 (87%), Gaps = 11/580 (1%)

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFME 610
            +IP+DLEVGYVP S+GG+YPGLYL + P +F+RPV+NIS+PS+   NIELIGPFEQVFME
Sbjct: 1    LIPEDLEVGYVPTSMGGSYPGLYLASCPARFIRPVKNISIPSD---NIELIGPFEQVFME 57

Query: 611  IRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFS 670
            I CPDGG+GGR N+  ATHEEIHPTGM+SVVANLTP+SDHNQSPRNMYQCQMAKQTM +S
Sbjct: 58   ISCPDGGNGGRNNSSLATHEEIHPTGMISVVANLTPWSDHNQSPRNMYQCQMAKQTMAYS 117

Query: 671  VQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMIL 730
             QAL+FRADQK+YHLQTPQ+P+VRT TYT Y IDE PTGTNAIVAVLA+TG+DMEDAMIL
Sbjct: 118  TQALQFRADQKIYHLQTPQSPVVRTKTYTTYSIDENPTGTNAIVAVLAHTGFDMEDAMIL 177

Query: 731  NKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQM 790
            NKSSV+RGMCHGQIYQTE IDLSD  ++ D G K FRR+ + K+ H  ID+DGLP VGQ 
Sbjct: 178  NKSSVERGMCHGQIYQTENIDLSDQNSRFDSGSKSFRRSTN-KAEHFRIDADGLPSVGQK 236

Query: 791  IHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPII 850
            ++P EPYCSIYD+ TN  R   RKG++ V VD+V+VDMK SK  PQ+ANIRFRH RNPII
Sbjct: 237  LYPDEPYCSIYDEVTNKTRHMKRKGTDPVIVDFVSVDMK-SKKHPQRANIRFRHARNPII 295

Query: 851  GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGG 910
            GDKFSSRHGQKGVCSQLWPDIDMPF+GVTGMRPDLIINPHAFPSRMTIAMLLES+AAKGG
Sbjct: 296  GDKFSSRHGQKGVCSQLWPDIDMPFNGVTGMRPDLIINPHAFPSRMTIAMLLESIAAKGG 355

Query: 911  SLHGKFMDATPFANSVKKTNGDTGTDESKS--LVDELGEMLRTCGFNYHGVEVLYSGVYG 968
            SLHGKF+DATPF ++VKKTNG+   +ESKS  LVD+LG ML+  GFN++  E LYSG  G
Sbjct: 356  SLHGKFVDATPFRDAVKKTNGE---EESKSSLLVDDLGSMLKEKGFNHYDTETLYSGYLG 412

Query: 969  TELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSL 1028
             EL CEIF+GPVYYQRLRHMVSDKFQVRSTG +DQ+T QPIKGRKRGGGIRFGEMERDSL
Sbjct: 413  VELKCEIFMGPVYYQRLRHMVSDKFQVRSTGQVDQLTHQPIKGRKRGGGIRFGEMERDSL 472

Query: 1029 LAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIH-PQKRAIREIGGLPPARAPKKV 1087
            LAHGA+YLLHDRLHT SD+H+ADVCSLCGS+LT++ ++  QK+ I+EIG LPP R PKKV
Sbjct: 473  LAHGASYLLHDRLHTSSDHHIADVCSLCGSLLTSSVVNVQQKKLIQEIGKLPPGRTPKKV 532

Query: 1088 TCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
            TC++C+TSKGMETVAMPYVFRYLAAELA+MNIK+TLQL D
Sbjct: 533  TCYSCKTSKGMETVAMPYVFRYLAAELASMNIKMTLQLSD 572


>gi|409050465|gb|EKM59942.1| hypothetical protein PHACADRAFT_115318 [Phanerochaete carnosa
            HHB-10118-sp]
          Length = 1224

 Score =  936 bits (2418), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 511/1142 (44%), Positives = 707/1142 (61%), Gaps = 102/1142 (8%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
             R+   SY G++   + ++  D   PV +E  + G  P+M+++ RC+L+G  S +LV   
Sbjct: 130  ARERLTSYRGRMTTRLCWRINDG--PVEKENRDCGLLPIMVRSVRCNLRGMSSAELVQHH 187

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EE  E GGYFI+NG ER+ R +ILP++N+ +S++R SF +R   YT  AV IRCVR DQ+
Sbjct: 188  EEPEEFGGYFIINGNERLIRYLILPRRNHVISLIRPSFTNRGPSYTPHAVQIRCVRPDQT 247

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            SVT  L+YL NGS  L F  + +EY++P+ ++LKALV  +D EIF  +     ++Y+   
Sbjct: 248  SVTNTLHYLSNGSATLRFSWRKQEYVIPIMLILKALVGVSDKEIFEGVMM---QEYEDT- 303

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
                   +++RV+++L   +  SL T  QCL+++G  F+ V+   +  +  A+   ++  
Sbjct: 304  ------FLTDRVEMLLRSFKAYSLYTGDQCLEYLGNKFRVVLGMPEDWTNKALGTWLVDK 357

Query: 278  YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
             + VHL+   DKF +L+FML+KLF++V  +   DNPDS Q+QE+LLPG L  + +KE+LE
Sbjct: 358  LVLVHLDSPRDKFRMLLFMLRKLFAVVSGSCSVDNPDSPQHQEVLLPGALYGMIIKERLE 417

Query: 338  DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
            + L    + IQ +++ +    DFF+   IKK+++K  + +IG  +   L TG L + +GL
Sbjct: 418  EALNNFVRSIQIDVQRDEPSVDFFDKRYIKKMLQK-INYEIGARMSNFLATGNLVSASGL 476

Query: 398  DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDG 457
            DLQQ +G+T+ AE+LN+LR+IS FR++HRGA FA L+TT+VRKLLPE+WGFLCPVHTPDG
Sbjct: 477  DLQQASGFTIVAEKLNWLRYISHFRSIHRGAFFAELKTTTVRKLLPEAWGFLCPVHTPDG 536

Query: 458  EPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVL 517
             PCGLLNH++ TCR+ +   +  +I            +L+  GM  +   LV       L
Sbjct: 537  SPCGLLNHLSRTCRIVTQPLAVAHIP----------ALLVSHGMTQAFSTLVDG--RRNL 584

Query: 518  SVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTS 577
             + LDGRV+G  P +  +++   LR  K      +P DLE+GYVP S GG YPGLYLF+S
Sbjct: 585  CIQLDGRVIGWAPQNTAQRLATSLRIWKTEGKHNVPLDLEIGYVPTSQGGQYPGLYLFSS 644

Query: 578  PPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEEIHPTG 636
              + +RPV+ +S      +N + IG FEQV+M I C P+  + G    F  +H E  PT 
Sbjct: 645  RSRMMRPVKYLS----NGRN-DQIGSFEQVYMNIACTPEEIEKG---VF--SHVEHKPTN 694

Query: 637  MLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTN 696
             LS++ANLTP+SD NQSPRN+YQCQM KQ+MG     L+ R D KLY LQT Q+P+VR  
Sbjct: 695  FLSILANLTPFSDFNQSPRNIYQCQMGKQSMGTPSTTLRHRTDNKLYRLQTGQSPVVRPA 754

Query: 697  TYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD-D 755
             +  YG+D +P GTNAIVAV++YTGYDMEDAMILNKS+ +RG  +G +Y+++ IDL D  
Sbjct: 755  LHDTYGMDSFPNGTNAIVAVISYTGYDMEDAMILNKSAHERGFGYGTVYKSQIIDLKDLQ 814

Query: 756  GNKVDR---------GQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN 806
            G              G  +      A S    +D DGLPYVG  ++PG+P  +  D TT 
Sbjct: 815  GRSASSSAPTLHFGFGYDIKTEGDKAHSCCEFLDLDGLPYVGTRLNPGDPIAAYIDDTTG 874

Query: 807  SWRTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQKGVCS 865
              R    KG E+ +VD V +   ++ +   QK +I  R TR P+IGDKFSSRHGQKGVCS
Sbjct: 875  RTRFVKYKGDETAYVDTVRLLGSDAGDQELQKVHITLRITRAPVIGDKFSSRHGQKGVCS 934

Query: 866  QLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANS 925
            Q WP IDMPF+  +GM+PD+IINPHAFPSRMTI ML+ES+A K G++HG   DATPF  +
Sbjct: 935  QKWPMIDMPFT-ESGMQPDVIINPHAFPSRMTIGMLVESMAGKAGAMHGLAQDATPFQFT 993

Query: 926  VKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRL 985
                       E  + VD  G+ L   G+NY+G E +YSG+ G E   +I+IG VYYQRL
Sbjct: 994  -----------EEDTAVDYFGDQLLAAGYNYYGNEPMYSGITGQEFAADIYIGVVYYQRL 1042

Query: 986  RHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCS 1045
            RHMV DKFQVR+TG +D +TRQP+KGRKR GGIRFGEMERD+L+AHG ++LL DRL  CS
Sbjct: 1043 RHMVLDKFQVRTTGPVDPVTRQPVKGRKRAGGIRFGEMERDALIAHGTSFLLQDRLMNCS 1102

Query: 1046 DYHVADVCSLCGSVLTATF--IHPQKRAIREIGGLPPARAPKKVTCHACQ---------- 1093
            DY  A VC  CGS+++  +  +   +  I   G L P   P    C  C+          
Sbjct: 1103 DYSTAWVCRTCGSLISLGYDDVSLGEMVIGTSGKLKPT-GPGGEYCRVCRAAAEEEEERE 1161

Query: 1094 ----------------------------TSKG--METVAMPYVFRYLAAELAAMNIKITL 1123
                                        +SKG  ++ VA+PYVFRYL AELAAM I I+L
Sbjct: 1162 RKALATGQNASKQNGLKVAIASQQMLGPSSKGGDLDIVAIPYVFRYLCAELAAMGINISL 1221

Query: 1124 QL 1125
            ++
Sbjct: 1222 EV 1223


>gi|303274472|ref|XP_003056556.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226462640|gb|EEH59932.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 1198

 Score =  927 bits (2396), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 513/1224 (41%), Positives = 712/1224 (58%), Gaps = 133/1224 (10%)

Query: 4    KKSADFEPLRELVRHHIESFDYMLDEGLSEMFD--------------------------- 36
            + S + + LR +V +H+ SF+Y ++ GL+E+                             
Sbjct: 10   RGSPERDALRSIVSNHVASFNYFVEHGLAEVIKRMASVSVQAPGTSAQSSRIRLWFSGVS 69

Query: 37   ----------------------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQF 74
                                   CR+A  +Y   + A++ +   +AG  V        QF
Sbjct: 70   MKTPVRERDGLSLARDPRVFPRECREAGSTYKAPMTANICWSVGEAGE-VYHHELQLCQF 128

Query: 75   PVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNY-------- 126
            PVM+ + RCHL  A   +L++  EE  E+GGYFILNG ER+ R +I  +++Y        
Sbjct: 129  PVMVSSTRCHLASASRAELINRGEEGREIGGYFILNGNERMIRLLIQQRRHYIIRIHDSV 188

Query: 127  ---------------------PMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYY 165
                                  + + R++F  R   YT  A  IRCV  D+ S T++L+Y
Sbjct: 189  CWISLINEITFYFYFFFECPCSLGLKRAAFTSRGYLYTPFATAIRCVSPDEHSCTVRLHY 248

Query: 166  LLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLV 225
            L  GS RL F  + +EY LP+G+V  AL + +D E+        D       G       
Sbjct: 249  LTGGSARLAFIHRRQEYFLPLGLVFIALCEVSDKEL-------QDVVCSGVPGPGAHVFA 301

Query: 226  SERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLND 285
            SERV ++L E+  L + TR Q L ++G  F+  ++    E+   + + +IRD++F+HL  
Sbjct: 302  SERVAMVLEEIHTLGIQTRSQALSYLGICFRERLNADSWETNIDIGKRIIRDHVFIHLAT 361

Query: 286  NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKK 345
             +DKFNLL+ MLQKL++LV      DNPDSL + E+LLPG L+ ++++E+L + L K K 
Sbjct: 362  CSDKFNLLVLMLQKLYALVTGQCSQDNPDSLMHHEVLLPGILLQMFMREQLSEALIKVKD 421

Query: 346  LIQDEIENNGKKFDFFNLANIKKVMEKNPSK-QIGTSIETMLKTGRLATQTGLDLQQRAG 404
             I  E E   +  D  +   I  ++  +  +  +G   E  L TG L ++TGL L Q +G
Sbjct: 422  TILREFEGQPQTMDLNDRERILSLVVGSIGRIDLGRMAEYFLATGNLVSKTGLGLSQTSG 481

Query: 405  YTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLN 464
            +T+ A++LN++R++S FR++HRGA +A LRTT+VRKLLP+SWGFLCPVHTPDG PCGLLN
Sbjct: 482  FTIVADKLNYVRYLSHFRSIHRGAYYAELRTTTVRKLLPDSWGFLCPVHTPDGSPCGLLN 541

Query: 465  HMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVL-SVLLDG 523
            H+T++C V   + S G  R       +I R+L  VG++ +  +L  +  P VL  V LDG
Sbjct: 542  HLTASCFV---HISDGQNRGLEM--AAIFRILSSVGVLITTGRLRSTSAPHVLIPVTLDG 596

Query: 524  RVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL---GGAYPGLYLFTSPPK 580
             +VG + +++  KVVA LR  KVS    +P  LEV Y+P  +   GGA+PGLYLFTS  +
Sbjct: 597  VMVGFMRAADSAKVVATLRSAKVSEPPKVPPSLEVVYIPTLVNRSGGAFPGLYLFTSSSR 656

Query: 581  FVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSV 640
             +RPVR ++     S  IE I   EQ FM I+CPDG  GG       THEE +   MLSV
Sbjct: 657  LMRPVRQLA-----SGFIENISSLEQAFMSIKCPDGSSGGSEE-LVFTHEESNAKAMLSV 710

Query: 641  VANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTK 700
            +A+ TP+SD+NQSPRNMYQCQMAKQTMG  + A  +R D KLY LQ+PQ PI  T +Y +
Sbjct: 711  IASCTPWSDYNQSPRNMYQCQMAKQTMGLPLHAFCYRPDTKLYRLQSPQRPIAVTESYDE 770

Query: 701  YGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVD 760
            Y IDEYP GTNA++AVLAYTGYDMEDAMI++K S++RG  H  +Y+TET+ L     KV 
Sbjct: 771  YSIDEYPLGTNAVIAVLAYTGYDMEDAMIVSKGSMERGFSHATLYKTETLSLVTGSGKV- 829

Query: 761  RGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVF 820
                    +  + SL   ++ DG P VG +I PG    S+ D+ T     +  KG++   
Sbjct: 830  ----FGHFDLRSHSLEGTLNIDGSPSVGSIIEPGSALASVVDRITGQTHVHKAKGTDQAI 885

Query: 821  VDYVAVDMKN-SKNL-PQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGV 878
            VD V+V   + S+ +   K  +  R+ RNPIIGDKFSSRHGQKGV S LWP+  +P+   
Sbjct: 886  VDRVSVIQTSLSRGIRSTKMALSLRYNRNPIIGDKFSSRHGQKGVLSFLWPEESLPYVER 945

Query: 879  TGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDES 938
            TG+RPD+IINPHAFPSRMTI ML+ES+A+K G+L G  ++A+PF  + K+          
Sbjct: 946  TGIRPDIIINPHAFPSRMTIGMLVESMASKSGALDGACINASPFKAAQKEKT-------Y 998

Query: 939  KSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRST 998
                 E GE LR  G++Y G E + +G+ G     +I+IG VYYQRLRHMVSDKFQVRS 
Sbjct: 999  SPPAAEYGETLRKHGYDYCGSETMVNGLTGEAFGVDIYIGLVYYQRLRHMVSDKFQVRSV 1058

Query: 999  GTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGS 1058
            G  + +T+QP KGRK GGGIRFGEMERD+LLAHGAAYL+HDRLH CSD  V  VCS CGS
Sbjct: 1059 GPNNSLTQQPTKGRKSGGGIRFGEMERDALLAHGAAYLIHDRLHACSDRFVTHVCSNCGS 1118

Query: 1059 VLTATFIHPQKRAIREIG-----GLPPARA--------PKKVTCHACQTSKGMETVAMPY 1105
            +L  +     K ++  +G     G    +          + +TC  C     ++ V +P+
Sbjct: 1119 ILAPSL----KLSVAGMGSGSALGCSAGKTLHTSCDGESEGITCRVCNRRTKIDKVELPF 1174

Query: 1106 VFRYLAAELAAMNIKITLQLGDGA 1129
            VF+YLA+ELAAMNI+I + +  GA
Sbjct: 1175 VFKYLASELAAMNIRIGIGIQCGA 1198


>gi|325192359|emb|CCA26801.1| DNAdirected RNA polymerase I complex subunit Rpa2 p [Albugo laibachii
            Nc14]
          Length = 1198

 Score =  925 bits (2390), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/1187 (42%), Positives = 710/1187 (59%), Gaps = 119/1187 (10%)

Query: 12   LRELVRHHIESFDYMLDEGLSEMFD----------------------------------- 36
            L  LV  HI SF+Y+L EGL                                        
Sbjct: 55   LENLVSPHINSFNYLLTEGLHLAIADIARVSIQLPGQNKLSIWIEDAQVGLPFSTNAVKG 114

Query: 37   -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
                    CRQ  ISYT  L+  +  +  +  + V R +   G  P+M++++RCHL    
Sbjct: 115  EQKLLPAECRQRGISYTAPLVLTLA-RAFNGSNTVERLQRVVGDIPIMVRSKRCHLHHLS 173

Query: 90   SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
             Q+LV  KEEA E+GGYFI NG ER  R + +P++++ M++ R +F +R E YTD AV +
Sbjct: 174  PQRLVQAKEEAYEVGGYFICNGNERCIRLLQMPRRHHVMAVRRGAFTNRGELYTDMAVFM 233

Query: 150  RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
            +CVR+DQSSVT+ L+YL +GS  + F ++ +E+++PV +VLKA+    D EI++ +    
Sbjct: 234  KCVRRDQSSVTVTLHYLEDGSATVRFSVRKQEFMIPVVLVLKAMYSLTDREIYDRVL--- 290

Query: 210  DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
                   +G   +  ++ R+++++ + +   + T+ + L ++G+HF+ V+      S+  
Sbjct: 291  -------RGEHTNTFLALRMEVVIQQAKAFGVYTKEEALTYLGKHFRYVLQNSDDASHLQ 343

Query: 270  VAETVIRDYIFVHL----NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPG 325
            V  ++I +++FVHL       + K  LL  ML+KL++        DN DS+ NQE+LLPG
Sbjct: 344  VGMSLIDEFVFVHLPKGEKGGSQKAELLCLMLRKLYAFAKGDICEDNSDSVMNQELLLPG 403

Query: 326  HLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
            HL    LKEK+++ L+  +  I  E     KK    + A ++++ ++ P+  IG ++   
Sbjct: 404  HLYLNILKEKIQEGLQSLRIQILKEC---AKKTGVMDDAFMRRLWDRTPN--IGQAMMYF 458

Query: 386  LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
            L TG L + +GLDL Q AGYT+ AE+LNF R++S FR+VHRG  F  ++TT+VRKLLP+S
Sbjct: 459  LNTGNLKSSSGLDLMQVAGYTIVAEKLNFYRYLSHFRSVHRGQFFTEMKTTAVRKLLPDS 518

Query: 446  WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS- 504
            WGFLCPVHTPDG PCGLLNH+ + C+V    +         +    + R L  +GMIPS 
Sbjct: 519  WGFLCPVHTPDGSPCGLLNHLATECQVVC--EPAFEATTILQNELKLARFLSSLGMIPSN 576

Query: 505  -LPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV-------IPDDL 556
                     P + L +L +G+V+G  PS     +   LR +K + +         I  +L
Sbjct: 577  GFSDGALIMPSSYLPILFNGKVIGCAPSDLCVTIQRALRSIKSTRSQADKRCEHGIIANL 636

Query: 557  EVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDG 616
            E+  +  +LGG +PGL+L     +  RP++ +     +++ IE IGP EQVFM I C + 
Sbjct: 637  EICLILSTLGGPFPGLFLSADAARLTRPIKQL-----DTEEIEWIGPMEQVFMNIACTE- 690

Query: 617  GDGGRRNAFPAT-HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALK 675
                 ++  PAT H EI PT MLS+VA+LTP+SD+NQSPRNMYQCQMAKQTMG    +L 
Sbjct: 691  -----KDIRPATTHIEIKPTNMLSLVASLTPFSDYNQSPRNMYQCQMAKQTMGTPCHSLS 745

Query: 676  FRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSV 735
             R D K+Y +QTPQ+PIV+     +Y +DEYP GTNA+VAV++YTGYDMEDAMILNKSS 
Sbjct: 746  HRGDSKMYRIQTPQSPIVQNERLREYQLDEYPLGTNAVVAVISYTGYDMEDAMILNKSSY 805

Query: 736  DRGMCHGQIYQTETIDLSDDG-----NKVDRGQKLFRR-----NKDAKSLHSVIDSDGLP 785
            +RG  H  +Y+  T+D+  DG      K D  +  F       + D +     +D DG P
Sbjct: 806  ERGFAHASVYKHVTVDIGSDGKQQRTQKQDSSKAYFTNVISDSDSDLQFYSPELDYDGFP 865

Query: 786  YVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRH 844
            +VG+ ++ G+P     D+TT        K SE   V+ V +  K+++     KAN++ R 
Sbjct: 866  HVGKTVYQGDPLACWVDETTGKQSYQKHKESEPAVVEQVTLLGKSTQTCDFTKANLKLRF 925

Query: 845  TRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLES 904
             RNP+IGDKFSSRHGQKGV S LWP  DMPF+  +GM PD+IINPHAFPSRMTI MLLES
Sbjct: 926  CRNPVIGDKFSSRHGQKGVLSILWPQTDMPFTE-SGMSPDIIINPHAFPSRMTIGMLLES 984

Query: 905  VAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYS 964
            +AAK G+L G+++DATPF             DE   +VD  GE L+  G+NY G E LYS
Sbjct: 985  MAAKAGALGGEYVDATPFK-----------FDEKNRVVDHFGEKLKQFGYNYMGTEPLYS 1033

Query: 965  GVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEME 1024
            G+ GT +  +I+IG VYYQRLRHMVSDK QVR+TG M+ +TRQP+KGRK+GGGIRFGEME
Sbjct: 1034 GISGTIMQADIYIGVVYYQRLRHMVSDKSQVRATGPMNSLTRQPVKGRKKGGGIRFGEME 1093

Query: 1025 RDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVL-TATFIHPQKRAIREIGGLPPARA 1083
            RDSLLAHG ++LL DRL  CSD H+A VC+ C S+L TAT     +RA  E  G      
Sbjct: 1094 RDSLLAHGCSFLLQDRLMNCSDKHIAIVCTNCESLLSTAT-----QRANVETTGQTEIAV 1148

Query: 1084 PKKVT-----CHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
              +++     C  C T +  + VAMPYVFRYL  ELAAMNIK++L L
Sbjct: 1149 AMQISREHWFCRVCSTREHCQPVAMPYVFRYLVNELAAMNIKLSLTL 1195


>gi|348690653|gb|EGZ30467.1| hypothetical protein PHYSODRAFT_538440 [Phytophthora sojae]
          Length = 1179

 Score =  924 bits (2387), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1116 (44%), Positives = 696/1116 (62%), Gaps = 76/1116 (6%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CRQ  ISYT  L+  +   +      V R +   G  P+M++++RCHL G    +LV  +
Sbjct: 109  CRQRGISYTAPLVVTLARSF-GGSQNVERIQRVVGDIPIMVRSKRCHLNGMSPTELVKAR 167

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EEA EMGGYFI NG ER  R + +P++++ M++ R +F +R + YT+ AV ++CV++DQS
Sbjct: 168  EEANEMGGYFICNGNERCVRLLQMPRRHHIMAVRRGAFANRGDLYTELAVTMKCVKRDQS 227

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            +VT+ L+YL +G+  + F ++ +E+++P G+VLKAL    D EI+  +           +
Sbjct: 228  AVTVTLHYLQDGNATVRFGVKKQEFMIPAGLVLKALYPLTDREIYERVL----------R 277

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGL-QSESYYAVAETVIR 276
            G   +  +S RV++IL E +  SL TR + L ++G+HF+  +  + ++ S   V   ++ 
Sbjct: 278  GDHENTYLSARVELILREAKKFSLYTRDEALAYLGKHFRFAMPYVYENMSNVEVGSKLLD 337

Query: 277  DYIFVHL----NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYL 332
            DY+FVH+         K  LL  ML+KL+         DN DS+ N E+LLPGHL  + L
Sbjct: 338  DYLFVHIPKGEKGRTQKVELLCLMLRKLYGFAKGDVPEDNSDSVMNHELLLPGHLYLMLL 397

Query: 333  KEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLA 392
            KEKL+D L   +  I  E +N  K     +   ++K+ ++ P+  IG ++   L TG L 
Sbjct: 398  KEKLQDSLVAMRMNILKETQNKEKSV-VMDQVFLRKMWDRTPN--IGNAMTYFLNTGNLR 454

Query: 393  TQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPV 452
            + +GLDL Q AGYT+ AE+LN+ R+ S FR+VHRG  F  ++TT+VRKLLP+SWGFLCPV
Sbjct: 455  SSSGLDLLQIAGYTIVAEKLNYYRYFSHFRSVHRGQFFTEMKTTAVRKLLPDSWGFLCPV 514

Query: 453  HTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSG 512
            HTPDG PCGLLNH+   C +  Y   + +  D+ +    + R L  +GMIP+      SG
Sbjct: 515  HTPDGSPCGLLNHLAVECELVCYPAHKAD--DYLQQEVKLARFLTSLGMIPT------SG 566

Query: 513  --------PPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV------IPDDLEV 558
                    P + L V+++G+V+G  P+   +++ + LR++K + +S       I  +LEV
Sbjct: 567  YADGALVVPYSYLPVMMNGKVLGGAPAEVCKRIASVLRKVKSADSSEERDANGIVKNLEV 626

Query: 559  GYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGD 618
              +  + GG +PGL+L     +  RPV  +     +++ IE IGP EQVFM+I C     
Sbjct: 627  CLILPTRGGPFPGLFLSADAARMSRPVMQM-----DTKRIEYIGPMEQVFMDIACT---- 677

Query: 619  GGRRNAFPAT-HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFR 677
              + +  PAT H EI PT MLS+VA+LTP+SD+NQSPRNMYQCQMAKQTMG    ++  R
Sbjct: 678  --KDDIRPATTHMEIKPTNMLSLVASLTPFSDYNQSPRNMYQCQMAKQTMGTPAHSIVHR 735

Query: 678  ADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDR 737
             D K+Y +Q+PQ PIV+     +Y +DEYP GTNA+VAV++YTG+DMEDAMILNKSS +R
Sbjct: 736  TDNKMYRIQSPQIPIVQNERLREYQLDEYPLGTNAVVAVISYTGFDMEDAMILNKSSYER 795

Query: 738  GMCHGQIYQTETIDLSDDGNKVDRGQKLFRRN----KDAKSLHSVIDSDGLPYVGQMIHP 793
            G  H  +Y+  T+D+S +G +     K +  N       +   + +D DG P++GQ+++ 
Sbjct: 796  GFAHASVYKQLTVDISSNGKQGSTTSKKYFSNIKTDGSGEQCSTKLDRDGFPHIGQVVNY 855

Query: 794  GEPYCSIYDKTTNSWRTNSRKGSESVFVDYV-AVDMKNSKNLPQKANIRFRHTRNPIIGD 852
            G+P  S  D+TT        K SE   ++ V  +   +  +   KA+I+ R  RNP IGD
Sbjct: 856  GDPIASWIDETTGQPSFQKHKESEPAIIEQVNMIGSASQASEFTKASIKLRFCRNPTIGD 915

Query: 853  KFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSL 912
            KFSSRHGQKGV S LWP  DMPFS  +G+ PD+IINPHAFPSRMTI ML+ES+AAK G+L
Sbjct: 916  KFSSRHGQKGVMSILWPQADMPFSE-SGISPDVIINPHAFPSRMTIGMLIESMAAKTGAL 974

Query: 913  HGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELT 972
             GK+MDATPF  S           E   ++D  G  L+  G+NY G E LYSG+ GT + 
Sbjct: 975  KGKYMDATPFKFS-----------EKDRVIDYFGSQLKEHGYNYMGSEPLYSGISGTVMQ 1023

Query: 973  CEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHG 1032
             +I+IG VYYQRLRHMVSDK QVR+TG M+ +TRQP+KGRK+GGGIR GEMERDSLLAHG
Sbjct: 1024 ADIYIGVVYYQRLRHMVSDKSQVRATGPMNSLTRQPVKGRKKGGGIRLGEMERDSLLAHG 1083

Query: 1033 AAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVT---C 1089
             A+L+ DRL  CSD H+A VC+ CGS+L+      Q+  +   G    A A K  T   C
Sbjct: 1084 CAFLVQDRLMNCSDKHIATVCTNCGSLLSNA---TQRSTVETAGQGEIAIAMKAKTQWYC 1140

Query: 1090 HACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
              CQT +G E VAMPYVFRYLA ELAAMNIK++L L
Sbjct: 1141 TVCQTGEGCEAVAMPYVFRYLANELAAMNIKMSLTL 1176


>gi|449549407|gb|EMD40372.1| hypothetical protein CERSUDRAFT_148338 [Ceriporiopsis subvermispora
            B]
          Length = 1228

 Score =  920 bits (2378), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/1152 (43%), Positives = 706/1152 (61%), Gaps = 118/1152 (10%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
              R+   SY G++M  + ++  D   PV  E  + G  P+M+++ RC+L+   S +LV  
Sbjct: 131  EARERLTSYRGRMMVKLCWRVNDG--PVEVENRDCGLLPIMVRSVRCNLRSMSSAELVKH 188

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
             EE  E GGYFI+NG ER+ R +ILP+++  +++VR SF +R   YT  AV IRCVR DQ
Sbjct: 189  HEEPEEFGGYFIINGNERLIRYLILPRRHSVIALVRPSFVNRGPSYTPYAVQIRCVRPDQ 248

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
            ++VT  L+YL NGS  L F  + +EY++P+ ++LKALV  +D EIF  +     + Y+  
Sbjct: 249  TAVTNTLHYLSNGSAMLRFSWRKQEYVIPIMLILKALVSASDKEIFEGVIM---QDYEDT 305

Query: 217  KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
                    +++RV+++L   +  SL T  QCL+++G+ F+ V++  +  +  A+   +I+
Sbjct: 306  -------FLTDRVELLLRSFKMYSLYTGDQCLEYLGDKFRVVLNMPEDWTNKALGAWIIQ 358

Query: 277  DYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
              + VHL    +KF +L+FML+KL+SLV H+   DNPDS Q+QE+LLPG L  + +KE+L
Sbjct: 359  KLVLVHLESPREKFRMLLFMLRKLYSLVSHSCCVDNPDSPQHQEVLLPGSLYGMIIKERL 418

Query: 337  EDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
            E+ L   +  IQ ++       DFF+   +KK++ +  +  +G  +   L TG L + +G
Sbjct: 419  EEALNNFRIAIQQDVNRGEPSVDFFDKRYVKKILART-NFDVGARMSNFLATGNLVSPSG 477

Query: 397  LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
            LDLQQ +G+T+ AE+LN+ R+IS FR++HRGA FA L+TT+VRKLLPE+WGFLCPVHTPD
Sbjct: 478  LDLQQASGFTIVAEKLNWQRYISHFRSIHRGAFFAELKTTTVRKLLPEAWGFLCPVHTPD 537

Query: 457  GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPK---LVKSGP 513
            G PCGLLNH++ TCR+                 TS L V+     IP+L     + +   
Sbjct: 538  GSPCGLLNHLSRTCRIV----------------TSPLSVV----HIPALLAAHGMTQVFA 577

Query: 514  PAV-----LSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGA 568
            P+V     L V LDGR++G  P + + ++   LR  K      +P DLE+G+VP+S GG 
Sbjct: 578  PSVDGRRNLCVQLDGRLIGWAPQAVLRQLATSLRIWKTEGKHSVPLDLEIGFVPVSKGGQ 637

Query: 569  YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPA 627
            YPGLYLF+S  + +RPV+ ++   ++      IG FEQV+M+I C P   + G      +
Sbjct: 638  YPGLYLFSSRARMMRPVKFVANGRDDQ-----IGSFEQVYMDIACTPAEIEDGV-----S 687

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            +H E  PT  LS++ANLTP+SD NQSPRN+YQCQM KQ+MG    A++ R D KLY LQT
Sbjct: 688  SHVEHSPTNFLSILANLTPFSDFNQSPRNIYQCQMGKQSMGTPATAIRHRTDNKLYRLQT 747

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
             Q+P+VR   +  YG+D +P GTNA+VAV++YTGYDMEDAMILNKS+ +RG  +G +Y+ 
Sbjct: 748  GQSPVVRPALHNTYGMDSFPNGTNAVVAVISYTGYDMEDAMILNKSAHERGFGYGTVYKA 807

Query: 748  ETIDLSD-------DGNKVDRGQKLFRRNKDAKSLH---SVIDSDGLPYVGQMIHPGEPY 797
             T+DL D           +  G     R ++    H     +D DGLP+VG  ++PG+P 
Sbjct: 808  YTVDLKDMPGVRTHSVPTLHFGLGYEIRTEEGPKQHWCCKFLDRDGLPFVGTRLNPGDPI 867

Query: 798  CSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSS 856
             +  D TT   +    KG E  +VD V +   ++ +   QK N+  R TR P+IGDKFSS
Sbjct: 868  AAYIDDTTGRTKFVKYKGDEIAYVDSVRLLGSDAGDSELQKINLTLRITRAPVIGDKFSS 927

Query: 857  RHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKF 916
            RHGQKGVCSQ WP IDMPFS  +GM+PD+IINPHAFPSRMTI ML+ES+A K G++HG  
Sbjct: 928  RHGQKGVCSQKWPAIDMPFSE-SGMQPDVIINPHAFPSRMTIGMLVESMAGKAGAMHGLA 986

Query: 917  MDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIF 976
             DATPF  S           ES + VD  GE L   G+NY+G E +YSG+ G E   +I+
Sbjct: 987  QDATPFQFS-----------ESDTAVDYFGEQLLAAGYNYYGSEPMYSGITGQEFAADIY 1035

Query: 977  IGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYL 1036
            IG VYYQRLRHMV DKFQVR+TG +D +TRQP+KGRKR GGIRFGEMERD+L+AHG ++L
Sbjct: 1036 IGVVYYQRLRHMVLDKFQVRTTGPVDPVTRQPVKGRKRAGGIRFGEMERDALIAHGTSFL 1095

Query: 1037 LHDRLHTCSDYHVADVCSLCGSVLTATF-----------IHPQ----------------- 1068
            L DRL  CSDY  A VC  CGS+++  +            H Q                 
Sbjct: 1096 LQDRLMNCSDYSTAWVCRTCGSLISLGYDDVSLGEMTMGAHGQLKPTGPGGEYCRVCRAA 1155

Query: 1069 -----KRAIREIGGLPPARAPKKVTCHAC--------QTSKG--METVAMPYVFRYLAAE 1113
                 +RA + +    PA  P +              + SKG  ++ +A+PYVFRYL AE
Sbjct: 1156 AEEDDERARQALANGQPAPPPIQGDVRVAIPAQNVLGRASKGGDLDIIAVPYVFRYLCAE 1215

Query: 1114 LAAMNIKITLQL 1125
            LA+M I ++L++
Sbjct: 1216 LASMGIAVSLEV 1227


>gi|320580927|gb|EFW95149.1| DNA-directed RNA polymerase I [Ogataea parapolymorpha DL-1]
          Length = 1166

 Score =  920 bits (2378), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/1106 (45%), Positives = 694/1106 (62%), Gaps = 74/1106 (6%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR+   +Y  +L+  V +   D     + E    GQ P+ML++ RCHL+     +LV L+
Sbjct: 107  CRERMTTYRARLLLKVCWSINDGEE--ISEVREAGQIPIMLQSNRCHLENLSPDQLVKLR 164

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EE+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R   Y+   V IR VR DQ+
Sbjct: 165  EESDELGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFANRGTSYSHFGVQIRSVRPDQT 224

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            S T  L+YL +G+V   F  +  EYL+PV ++LKAL++TND EIF+ +            
Sbjct: 225  SQTNVLHYLNDGNVTFRFSWRKNEYLIPVVMILKALIETNDREIFDGVV----------- 273

Query: 218  GA-VGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
            GA  G+  +++R++++L   ++ +L ++ + L ++G+ F+ V       S  +V E VI+
Sbjct: 274  GADTGNSFLTDRLELLLRTYKNYNLYSQKETLAYLGDKFRVVFGATPDMSDISVGEEVIK 333

Query: 277  DYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
              + VHL +N DKF +L+FM++KL+SLV      DNPD+ Q+QEILL G L  + LKEK+
Sbjct: 334  RIVLVHLENNEDKFRMLLFMIRKLYSLVAGDCSPDNPDATQHQEILLGGFLYGMILKEKI 393

Query: 337  EDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
            E++L+  +  +Q +I N G   +F +   + +V  +  ++ IG  ++  L TG L +Q+G
Sbjct: 394  EEYLQNIRLQVQSDI-NRGIAVNFSDRKYMSRVFLR-INENIGQKLQYFLSTGNLVSQSG 451

Query: 397  LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
            LDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPVHTPD
Sbjct: 452  LDLQQVSGYTVVAEKINFHRFISHFRMVHRGSFFAQLKTTAVRKLLPESWGFLCPVHTPD 511

Query: 457  GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAV 516
            G PCGLLNH+   CR+ +         D +K    + ++L  +G+ P+   +  SGP  V
Sbjct: 512  GSPCGLLNHLAHKCRITT------KASDVTK----VPKLLHKLGVSPTASAINISGP-NV 560

Query: 517  LSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFT 576
              V LDGR++G     + + V   LR  KV     IP DLE+GYVP S GG YPGLYLF 
Sbjct: 561  CCVQLDGRIIGWCSHKQGKIVADTLRFWKVEGHHDIPLDLEIGYVPPSSGGQYPGLYLFA 620

Query: 577  SPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEEIHPT 635
               + VRPVR + L  E+     ++GPFEQVFM +   P   +         TH E  PT
Sbjct: 621  GASRMVRPVRYLPLDKED-----IVGPFEQVFMNVAVIPSEIENNIH-----THVEFAPT 670

Query: 636  GMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRT 695
             +LS++ANLTP+SD NQSPRNMYQCQM KQTMG    AL  R+D KLY LQ+ QTPIV+ 
Sbjct: 671  NILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQSGQTPIVKA 730

Query: 696  NTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD 755
            N Y  YG+D +P GTNA+VAV++YTGYDM+DAMI+NKS+ +RG  +G +Y+ E +DLS +
Sbjct: 731  NLYDDYGMDNFPNGTNAVVAVISYTGYDMDDAMIINKSADERGFGYGVVYKVEKVDLSLN 790

Query: 756  GNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR 813
              + D   + F    D   +S    +D+DGLP++G  +  G+P C+ YD      +  + 
Sbjct: 791  RKRGDPITQHFGFGSDEWPESWKEKLDNDGLPHIGVHVEEGDPICAYYDDILGKTKVKTY 850

Query: 814  KGSESVFVDYVA-VDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDID 872
              SE  F++ V  +   N  +  Q  +I++R TR P+IGDKFSSRHGQKGVCS+ WP ID
Sbjct: 851  HSSEPAFIEEVKLLGDDNGTSEFQTLSIKYRITRQPLIGDKFSSRHGQKGVCSRKWPQID 910

Query: 873  MPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGD 932
            MPFS  TG++PD+IINPHAFPSRMTI M +ES+A K G+LHG   DATP+  S       
Sbjct: 911  MPFSE-TGIQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDATPWKFS------- 962

Query: 933  TGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDK 992
                ES +  D  GE L+  G+NYHG E LYSGV G EL  +I+IG VYYQRLRHMV+DK
Sbjct: 963  ----ESDTPADYFGEQLQRAGYNYHGNEPLYSGVTGEELRADIYIGVVYYQRLRHMVNDK 1018

Query: 993  FQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADV 1052
            FQVRSTG ++ +T QP+KGRKR GGIR GEMERD+L+ HG ++LL DRL  CSDY    +
Sbjct: 1019 FQVRSTGPVNSLTLQPVKGRKRHGGIRVGEMERDALIGHGTSFLLQDRLLNCSDYTQTAI 1078

Query: 1053 CSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGME------------- 1099
            C  CGS+L+     P+   I         R  KK+     Q +  M+             
Sbjct: 1079 CRSCGSLLSTQMSVPR---IGTQATTRCRRCAKKID-RVLQNTDEMDIWEDGQGTKFIGG 1134

Query: 1100 ----TVAMPYVFRYLAAELAAMNIKI 1121
                TVA+P+V +YL +EL+AM I++
Sbjct: 1135 GDTTTVAIPFVLKYLDSELSAMGIRM 1160


>gi|385302821|gb|EIF46931.1| dna-directed rna polymerase i [Dekkera bruxellensis AWRI1499]
          Length = 1168

 Score =  919 bits (2374), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/1113 (44%), Positives = 694/1113 (62%), Gaps = 85/1113 (7%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
             CR+   SY G+L+  V +   D       E  + G  PVM+++ RC+L+G   ++LV  
Sbjct: 106  ECRERLSSYRGRLLLKVTWNVNDGEE--TSEVRDAGLLPVMVQSNRCNLEGMSPEELVEH 163

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
            +EE+ E GGYFI+NG+E++ R +I+P++NYPM++VRSSF +R   Y+   V IRCVR DQ
Sbjct: 164  REESDEFGGYFIVNGIEKIIRMLIVPRRNYPMAIVRSSFSNRGASYSSYGVQIRCVRPDQ 223

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
            +++T  L+YL +G+V   F  +  EYL+PV ++L+AL+++ND EIF+             
Sbjct: 224  TALTNVLHYLNDGNVTFRFSWRKNEYLVPVVMILRALIESNDREIFD------------- 270

Query: 217  KGAVGS----PLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAE 272
             G VGS      +++R++++L   +   L ++ + L +IG  F+ V       +   V E
Sbjct: 271  -GIVGSDVENSFLTDRLELLLRTYKHYKLNSKKEALAYIGNKFRVVFAATPDRTDVDVGE 329

Query: 273  TVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYL 332
             V+R  + VHL+DN DKF +L+FM++KL++LV      +NPDS QN EILL G L  + +
Sbjct: 330  EVLRRIVLVHLSDNRDKFRMLLFMVRKLYALVAGDCTPENPDSTQNHEILLGGFLYGMII 389

Query: 333  KEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLA 392
            KEK++++L+  +  IQ +I N G   +F +   + +V+ +  ++ IG  ++  L TG L 
Sbjct: 390  KEKIDEYLQSIRTQIQVDI-NRGVAVNFKDPRYMHRVLMR-VNENIGQKLQYFLSTGNLV 447

Query: 393  TQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPV 452
            +Q+GLDLQQ +GYTV AE++NF RF++ FR VHRGA FA L+TT+VRKLLPESWGFLCPV
Sbjct: 448  SQSGLDLQQVSGYTVVAEKINFHRFLAHFRMVHRGAFFASLKTTTVRKLLPESWGFLCPV 507

Query: 453  HTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS-ILRVLIGVGMIPSLPKLVKS 511
            HTPDG PCGLLNH+   C+V +            ++ TS I   +  +G+ P+L     S
Sbjct: 508  HTPDGAPCGLLNHLAYKCQVTT-----------EQLDTSAIPEAVYKLGVSPTLSAAAIS 556

Query: 512  GPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKV-SAASVIPDDLEVGYVPLSLGGAYP 570
            GP  V  V LDGR++G     + + V   LR  KV S+   IP +LE+GYVP S  G YP
Sbjct: 557  GP-NVCCVQLDGRIIGWCSHKQGKYVADTLRFWKVESSEHGIPLELEIGYVPESQNGQYP 615

Query: 571  GLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHE 630
            GLYLF    + +RPV+ + L  ++     ++GPFEQV+M I      +   +N    TH 
Sbjct: 616  GLYLFGGRSRMIRPVKYLPLNKKD-----IVGPFEQVYMNIAVEP--NEIEKNVH--THV 666

Query: 631  EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQT 690
            E  PT +LS +ANLTP+SD NQSPRNMYQCQM KQTMG    AL  R+D KLY LQ  ++
Sbjct: 667  EFSPTYILSTLANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQCGES 726

Query: 691  PIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETI 750
            PIV+   Y  +G+D +P GTNA+VAV+AYTGYDM+DAMILNKS+ +RG  +G +Y+TE I
Sbjct: 727  PIVKAGLYDDFGMDNFPNGTNAVVAVIAYTGYDMDDAMILNKSTEERGFAYGSMYKTEKI 786

Query: 751  DLSDDGNKVDRGQKLFRRNKD--AKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSW 808
            DL  D  + D   + F   +D   +     +D DG+PY+G  I  G+P C+ YD      
Sbjct: 787  DLGMDRRRGDPITQHFGFGEDHWPEEWRERLDEDGMPYIGSFIKEGDPICAFYDDVLGRT 846

Query: 809  RTNSRKGSESVFVDYVA-VDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQL 867
            R    KGSES F+D V  +   N+    Q A I+FR  R PIIGDKFSSRHGQKGVCS+ 
Sbjct: 847  RIKHFKGSESGFIDEVKLLGDDNAAKECQIATIKFRMRRGPIIGDKFSSRHGQKGVCSRK 906

Query: 868  WPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVK 927
            WP IDMPF+  +GM+PD+IINPHAFPSRMTI ML+ES+A K G+LHG   D+TP+  S  
Sbjct: 907  WPQIDMPFTE-SGMQPDIIINPHAFPSRMTIGMLIESMAGKAGALHGIAQDSTPWQFS-- 963

Query: 928  KTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRH 987
                     E+ + +   G+ L++ G+NY+G E +YSGV G EL  +I+IG VYYQRLRH
Sbjct: 964  ---------ENDTPLKYFGDQLKSAGYNYYGNEPMYSGVTGEELRADIYIGVVYYQRLRH 1014

Query: 988  MVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDY 1047
            MV+DKFQVRSTG ++ +T QP+KGRKR GGIR GEMERD+L+ HG+A+LL DRL  CSDY
Sbjct: 1015 MVNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRIGEMERDALIGHGSAFLLQDRLLNCSDY 1074

Query: 1048 HVADVCSLCGSVLTATFIHPQKRAIREIG---GLPPARAPKKVTCHACQT---------- 1094
                VC  CGS+L+       + ++  IG   G+   R  KKV                 
Sbjct: 1075 TQCSVCKECGSILST------QMSVSRIGTAAGIRCRRCAKKVDSTTVSKDDLDVWEDGQ 1128

Query: 1095 ------SKGMETVAMPYVFRYLAAELAAMNIKI 1121
                   +   TV +P+V +YL +EL AM I++
Sbjct: 1129 GNKYVGGENTTTVGIPFVLKYLDSELNAMGIRM 1161


>gi|300120856|emb|CBK21098.2| unnamed protein product [Blastocystis hominis]
 gi|300175006|emb|CBK20317.2| unnamed protein product [Blastocystis hominis]
          Length = 1151

 Score =  917 bits (2369), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/1165 (43%), Positives = 704/1165 (60%), Gaps = 100/1165 (8%)

Query: 8    DFEPLRELVRHHIESFDYMLDEGLS----------------------------------- 32
            D E L++LVR HIES+++MLD+GLS                                   
Sbjct: 31   DSERLKDLVRFHIESYNFMLDKGLSLAVRDIFPLEVENPDNKQVLRIWIQDVKIGYPIKE 90

Query: 33   ------EMFDH-CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHL 85
                   +  H CR+  ISYT  L+A V  Q  D G  VV ER N GQ P+M+ + RCHL
Sbjct: 91   DGSSETRLLPHECRERGISYTSPLIAYVAHQVND-GQIVVTER-NLGQLPIMVGSNRCHL 148

Query: 86   QGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDK 145
                  + V+  EE  E+GGYFI NGLER+ R + + +++  +++ R SF  R   YT  
Sbjct: 149  SRMTPAERVNCGEEVYELGGYFICNGLERMIRLLQVTRRHIIVALDRPSFTKRGPEYTSL 208

Query: 146  AVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHL 205
               ++CVR+D SS+T+ L+YL +G   L ++++ +E+L+PV ++LKAL D +D EI+  L
Sbjct: 209  GCQMKCVREDMSSMTVTLHYLRDGRCTLRWFIRKQEFLVPVVLILKALKDCSDREIYEQL 268

Query: 206  TCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSE 265
                       +G   +  +S+R++++L E +++ LTTR +CL ++G  F+ ++      
Sbjct: 269  M----------RGDSNNTFLSDRLELLLRESKNMHLTTRRECLAYLGSRFRILLYMSSRY 318

Query: 266  SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPG 325
            S   V E +++ YI VHL  N  KF LL+ M+ KL+ L +     DN DSL N E+LL G
Sbjct: 319  SDVEVGEELLKRYILVHLKSNEAKFALLLEMISKLYKLANKEIPPDNADSLMNHELLLGG 378

Query: 326  HLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
            HL+ ++LKEKLE++L   ++ I  E++ + +K D ++ A IKK +++     IG     +
Sbjct: 379  HLMCMFLKEKLEEFLIGVRQNIAREVDRHKEKIDLYDTAWIKKALDRQ--SDIGKKAYYL 436

Query: 386  LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
            L TG + + TGLDLQQ AGYT+ AE+LN  R++S FR+VHRG  F  ++TT  RKLLP+S
Sbjct: 437  LATGNIISSTGLDLQQAAGYTIVAEKLNHWRYLSHFRSVHRGQFFTEMKTTQPRKLLPDS 496

Query: 446  WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
            WGFLC VHTPDG PCGLLNH+T+TC + +         D       + R+   +G++P+ 
Sbjct: 497  WGFLCCVHTPDGAPCGLLNHLTATCSITT---------DVVPA-PQLARLCQALGLVPAD 546

Query: 506  PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL-S 564
              LV       + V  +G+++G + +++       LR LK+  A  +P  LE+  VP   
Sbjct: 547  SPLVYGN--HYVPVFFNGQLLGRVLAAQAAAFCDQLRLLKLDGAK-LPACLEIVCVPAGE 603

Query: 565  LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNA 624
             GG +P +YL T   +  RPVR++      +   E IGP EQV++EI C +  +  R+  
Sbjct: 604  QGGPWPCVYLSTDAARMQRPVRHLG-----TGKTEWIGPLEQVYLEIACVE--EDIRKGV 656

Query: 625  FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
               TH E+ P  MLS++A+LTP+SD NQSPRNMYQCQM KQTMG    +   R D K+Y 
Sbjct: 657  --TTHIEVSPANMLSLIASLTPFSDFNQSPRNMYQCQMGKQTMGTPGLSWTHRTDTKMYR 714

Query: 685  LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI 744
            LQTPQ PIV    Y ++  D YP G N++VAV++YTGYD+EDAMILNKSS +RG  H  +
Sbjct: 715  LQTPQAPIVHNALYREFLFDSYPQGMNSVVAVISYTGYDLEDAMILNKSSFERGFAHASV 774

Query: 745  YQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSV----IDSDGLPYVGQMIHPGEPYCSI 800
            Y++  IDL D  +   +     R  ++A +  +     +D DGLP +G  +  G+  C++
Sbjct: 775  YKSHDIDLVDPKDPATKSLIFKRPPREAIASSNPSALRLDPDGLPPIGLFVQKGDAICAV 834

Query: 801  YDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQ 860
            Y+  T          SE  +VD V +   +     Q+ NI+FR+ RNP++GDKFSSRHGQ
Sbjct: 835  YNTETGKTSLRFHDSSEPAYVDEVRILDGDPALGVQRVNIKFRYNRNPVVGDKFSSRHGQ 894

Query: 861  KGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDAT 920
            KGV S LWP IDMPF+  +G+ PD IINP+AFPSRMTI ML+ES+A K G+LHG++MDAT
Sbjct: 895  KGVLSVLWPQIDMPFTA-SGITPDCIINPNAFPSRMTIGMLIESMAGKSGALHGQYMDAT 953

Query: 921  PFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPV 980
            PF  S           E +  VD  GE L+  GFNY+G E LYSG++G  L  +I+IG V
Sbjct: 954  PFQFS-----------EKQCAVDFFGEQLKAAGFNYYGSEPLYSGIWGDLLEADIYIGVV 1002

Query: 981  YYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDR 1040
            YYQRLRHMVSDK QVR+ G ++Q+TRQP+KGRKR GGIRFGEMERDS++AHGA++LLH+R
Sbjct: 1003 YYQRLRHMVSDKSQVRANGPINQLTRQPLKGRKRHGGIRFGEMERDSIIAHGASFLLHER 1062

Query: 1041 LHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMET 1100
            L   SD H+A +C  CGS+L+AT     K   ++      +R PK V CH C+TS     
Sbjct: 1063 LLNSSDRHLAVICDKCGSMLSAT----AKPMTQQEAATLSSRVPKMV-CHVCKTSTTCHL 1117

Query: 1101 VAMPYVFRYLAAELAAMNIKITLQL 1125
            V MPYV RYL  ELAAMNIK+   +
Sbjct: 1118 VPMPYVTRYLVNELAAMNIKVAFDV 1142


>gi|301119239|ref|XP_002907347.1| DNA-directed RNA polymerase I subunit RPA2, putative [Phytophthora
            infestans T30-4]
 gi|262105859|gb|EEY63911.1| DNA-directed RNA polymerase I subunit RPA2, putative [Phytophthora
            infestans T30-4]
          Length = 1179

 Score =  916 bits (2368), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/1189 (42%), Positives = 718/1189 (60%), Gaps = 124/1189 (10%)

Query: 10   EPLRELVRHHIESFDYMLDEGL----SEMF------------------------------ 35
            E L++LV  H++SF++ L EGL    ++M                               
Sbjct: 39   EKLQKLVSPHLDSFNFFLTEGLDLAVADMCKVPVELPNQHRMDIWIENAQIGYPTTENQI 98

Query: 36   --------DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQG 87
                      CRQ  +SYT  L+  +   +      V R +   G+ P+M++++RCHL G
Sbjct: 99   TGEQKLLPSECRQRGVSYTAPLVVTLARSF-GGSQNVERLQRVVGEIPIMVRSKRCHLNG 157

Query: 88   ADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAV 147
                 LV  +EEA EMGGYFI NG ER  R + +P++++ M++ R +F +R + YT+ AV
Sbjct: 158  MAPTDLVKAREEANEMGGYFICNGNERCVRLLQMPRRHHIMAVRRGAFANRGDLYTELAV 217

Query: 148  VIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTC 207
             ++CV++DQS+VT+ ++YL +G+  + F ++ +E+++PVG+VLKAL    D EI+  +  
Sbjct: 218  FMKCVKRDQSAVTVTVHYLQDGNATVRFGVKKQEFMIPVGLVLKALYPLTDREIYERVL- 276

Query: 208  CYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ----PVIDGLQ 263
                     +G   +  +S RV++IL E +  SL TR + L ++G+HF+     V D + 
Sbjct: 277  ---------RGDHENTYLSARVELILREAKKFSLYTRDEALAYLGKHFRFAMPYVYDNMN 327

Query: 264  SESYYAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQ 319
            +     V   ++ D++FVH+         K  LL  ML+KL++        DN DS+ N 
Sbjct: 328  N---VEVGSKLLDDFLFVHIPKGEKGRTQKVELLCLMLRKLYAFAKGDVPEDNADSVMNH 384

Query: 320  EILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIG 379
            E+LLPGHL  + +KEKL++ L   +  I  E +N  K+    +   ++K+ E+ P+  IG
Sbjct: 385  ELLLPGHLYLMIMKEKLQESLVAMRANILKETQNK-KRAVVMDQVFLRKMWERTPN--IG 441

Query: 380  TSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVR 439
             ++   L TG L + +GLDL Q AGYT+ AE+LN+ R+ S FR+VHRG  F  ++TT+VR
Sbjct: 442  NAMTYFLNTGNLRSSSGLDLLQIAGYTIVAEKLNYYRYFSHFRSVHRGQFFTEMKTTAVR 501

Query: 440  KLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGV 499
            KLLP+SWGFLCPVHTPDG PCGLLNH+   C +  +   + +  D+ +    + R L  +
Sbjct: 502  KLLPDSWGFLCPVHTPDGSPCGLLNHLAVECELVCHPAFKAD--DYLQQEVKLARFLASL 559

Query: 500  GMIPSLPKLVKSG--------PPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV 551
            GMIP+      SG        P + L V+++G+V+G  P+   +++   LR++K + +S 
Sbjct: 560  GMIPT------SGYADGALIVPYSYLPVMMNGKVLGGAPAEVCKRIAEVLRKVKSAKSSE 613

Query: 552  ------IPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFE 605
                  I  +LEV  +  + GG +PGLYL     +  RPV+ +     +++ IE IGP E
Sbjct: 614  ERDANGIVSNLEVCLILPTRGGPFPGLYLSADAARMSRPVKQM-----DTKRIEYIGPME 668

Query: 606  QVFMEIRCPDGGDGGRRNAFPAT-HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAK 664
            QVFM+I C       + +  PAT H EI PT MLS+VA+LTP+SD+NQSPRNMYQCQMAK
Sbjct: 669  QVFMDIACT------KDDIRPATTHMEIKPTNMLSLVASLTPFSDYNQSPRNMYQCQMAK 722

Query: 665  QTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDM 724
            QTMG    ++  R+D K+Y +Q+PQ PIV+     +Y +DEYP GTNA+VAV++YTG+DM
Sbjct: 723  QTMGTPAHSIVHRSDNKMYRIQSPQIPIVQNERLREYQLDEYPLGTNAVVAVISYTGFDM 782

Query: 725  EDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRN----KDAKSLHSVID 780
            EDAMILNKSS +RG  H  +Y+  T+D+S +G +     K +  N           + +D
Sbjct: 783  EDAMILNKSSYERGFGHASVYKQLTVDISSNGKQGSATSKKYFSNIKTDGSGDYCSTKLD 842

Query: 781  SDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYV-AVDMKNSKNLPQKAN 839
             DG P++GQ+++ G+P  S  D+TT        K SE   ++ V  +   +S +   KA+
Sbjct: 843  RDGFPHIGQVVNHGDPVASWIDETTGLPSVQKHKESEPAIIEQVNMIGNSSSSSEFTKAS 902

Query: 840  IRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIA 899
            I+ R  RNP IGDKFSSRHGQKGV S LWP  DMPFS  +G+ PD+IINPHAFPSRMT+ 
Sbjct: 903  IKLRFCRNPTIGDKFSSRHGQKGVMSILWPQADMPFSE-SGISPDIIINPHAFPSRMTVG 961

Query: 900  MLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGV 959
            ML+ES+AAK G+L GK+MDATPF  S           E   ++D  G  L+  G+NY G 
Sbjct: 962  MLIESMAAKTGALKGKYMDATPFQFS-----------EKDRVIDYFGSQLKEHGYNYMGS 1010

Query: 960  EVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIR 1019
            E LYSG+ GT +  +I+IG VYYQRLRHMVSDK QVR+TG M+ +TRQP+KGRK+GGGIR
Sbjct: 1011 EPLYSGISGTVMQADIYIGVVYYQRLRHMVSDKSQVRATGPMNSLTRQPVKGRKKGGGIR 1070

Query: 1020 FGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLP 1079
             GEMERDSLLAHG A+L+ DRL  CSD H+A VC+ CGS+L+      Q+  +   G   
Sbjct: 1071 LGEMERDSLLAHGCAFLVQDRLLNCSDKHIATVCTNCGSLLSNA---TQRSTVETAGQGE 1127

Query: 1080 PARAPKKVT---CHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
             A A K  T   C  CQT +  + VAMPYVFRYLA ELAAMNIK++L L
Sbjct: 1128 IAVAMKSKTQWYCTVCQTGESCQPVAMPYVFRYLANELAAMNIKMSLTL 1176


>gi|295442842|ref|NP_595819.2| DNA-directed RNA polymerase I complex subunit Rpa2
            [Schizosaccharomyces pombe 972h-]
 gi|259016134|sp|Q9P7X8.2|RPA2_SCHPO RecName: Full=Probable DNA-directed RNA polymerase I subunit RPA2;
            AltName: Full=DNA-directed RNA polymerase I polypeptide
            2; Short=RNA polymerase I subunit 2
 gi|254745588|emb|CAB66435.2| DNA-directed RNA polymerase I complex subunit Rpa2
            [Schizosaccharomyces pombe]
          Length = 1174

 Score =  916 bits (2368), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/1144 (43%), Positives = 697/1144 (60%), Gaps = 132/1144 (11%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
             R+   +Y  +L+  ++F +   G P   E    G  P+M+++ RCHL+G    +L++ K
Sbjct: 106  ARERLTTYKSRLV--LKFSWSVNGGPRQSEMREVGMIPIMVRSNRCHLEGLSPAELIAHK 163

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EE+ EMGGYFI+NG+E++ R +ILPK+N+P +++R SF +R   Y+   + IRCVR DQS
Sbjct: 164  EESEEMGGYFIVNGIEKLIRMLILPKRNHPTAIIRPSFANRGTSYSQYGLSIRCVRPDQS 223

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            S+T  L+YL NG     F  +  EYL+P  ++LKAL++T+D EIF  +            
Sbjct: 224  SLTNTLHYLNNGVTMFRFHWRKNEYLIPSMMILKALLETSDKEIFEGIV----------G 273

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
              +G+  +++RV+++L   +   L ++ + LQ++G  F+ V+   +  +   V   +++ 
Sbjct: 274  KDLGNTFLTDRVELMLRAYKSYGLYSQTETLQYLGSKFRVVLGVAEDLTDVEVGRFLLQK 333

Query: 278  YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
             + VHL +  DKF LL+FM++KL++LV     +DNPDS Q+QEILL G L    LKEK+E
Sbjct: 334  VVLVHLREAKDKFRLLLFMIRKLYALVAGECCADNPDSPQHQEILLGGFLYGQILKEKIE 393

Query: 338  DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
            DWL   +  I  ++  +    DF +   + +V  K  +  IGT ++  L TG L + TGL
Sbjct: 394  DWLNSIRAQINLDVRRSAPGVDFSDRKYLTRVFSK-INNDIGTKLQYFLSTGNLVSNTGL 452

Query: 398  DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDG 457
            DLQQ  GYTV AE+LNF RF+S FR VHRGA FA L+TT+VRKLLPE+WGF+CPVHTPDG
Sbjct: 453  DLQQATGYTVVAEKLNFYRFLSHFRMVHRGAFFAELKTTTVRKLLPEAWGFMCPVHTPDG 512

Query: 458  EPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVL 517
             PCGLLNH+   C + ++                       V  IPSL   +   PP+V+
Sbjct: 513  SPCGLLNHLARKCEIVTHPSD--------------------VSQIPSLLLSLGVDPPSVV 552

Query: 518  S-------VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAA-----------SVIPDDLEVG 559
                    V LDG++VG       + V   LR +K+  A           + +P DLE+G
Sbjct: 553  GHESGWGCVQLDGKIVGWCTYKLAKHVADVLRLMKIEYAVKLRNGTATEPAKVPLDLEIG 612

Query: 560  YVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDG 619
            YVP S  G YPGLYLF++P + VRPV++IS     +  ++++GPFEQV+M+I C      
Sbjct: 613  YVPPSHNGQYPGLYLFSNPARMVRPVKHIS-----TGELDMLGPFEQVYMDIAC------ 661

Query: 620  GRRNAFP-------ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQ 672
                 FP       +TH E  PT +LS+VAN+TP+SD NQSPRNMYQCQM KQTMG    
Sbjct: 662  -----FPKEIVPKVSTHVEYSPTNVLSIVANMTPFSDFNQSPRNMYQCQMGKQTMGTPGT 716

Query: 673  ALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNK 732
            AL++R D KLY LQT QTP+VR   +  YG+D YP GTNA+VAV++YTGYDMEDAMILNK
Sbjct: 717  ALRYRTDNKLYRLQTGQTPVVRPKLHNTYGLDHYPNGTNAVVAVISYTGYDMEDAMILNK 776

Query: 733  SSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRR------NKDAKSLHSVIDSDGLPY 786
            S+ +RG  +G +Y+ E+ DLS    K  RG+ +         +   +     +D+DGLP+
Sbjct: 777  SAHERGFGYGTVYKGESFDLS---QKRRRGEPVVHHFGFAPGSTPRREWLQKLDADGLPF 833

Query: 787  VGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAV---DMKNSKNLPQKANIRFR 843
            +G  +  G+P  + YD++T      +  G+E  FVD V +   D+ +S+   Q+ +++ R
Sbjct: 834  IGIKLEDGDPIVAYYDESTGQNFIETYHGTEPGFVDEVRLLGNDVGDSEC--QQIHVKLR 891

Query: 844  HTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLE 903
             TR+PIIGDKFSSRHGQKG+CSQ WP +DMPF+  +GM+PD+IINPHAFPSRMTI M +E
Sbjct: 892  ITRSPIIGDKFSSRHGQKGICSQKWPTVDMPFT-ESGMQPDIIINPHAFPSRMTIGMFIE 950

Query: 904  SVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLY 963
            S+A K G+ HG   D+TPF  S           E ++  D  GE L   G+NYHG E +Y
Sbjct: 951  SLAGKAGACHGLAQDSTPFIYS-----------EQQTAADYFGEQLVKAGYNYHGNEPMY 999

Query: 964  SGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEM 1023
            SG+ G E+  +I+IG VYYQRLRHMVSDKFQVR+TG +  +TRQP+KGRKR GGIRFGEM
Sbjct: 1000 SGITGQEMKADIYIGVVYYQRLRHMVSDKFQVRTTGPIHNLTRQPVKGRKRAGGIRFGEM 1059

Query: 1024 ERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARA 1083
            ERD+++ HG ++L+ DRL  CSDY  + VC  CGS+++         +   + G+  A  
Sbjct: 1060 ERDAVIGHGTSFLMQDRLMNCSDYAQSWVCRDCGSIISIM-------STISMNGVGSA-- 1110

Query: 1084 PKKVTCHAC-QTSKGMET---------------------VAMPYVFRYLAAELAAMNIKI 1121
              +V C +C + + G+E                      +A+P VF YL AEL AMNIK+
Sbjct: 1111 -SEVRCRSCAKPALGLEDTSDIWQDGSGKKFVGGTNTTLIALPSVFNYLTAELTAMNIKM 1169

Query: 1122 TLQL 1125
             L++
Sbjct: 1170 MLEV 1173


>gi|388851719|emb|CCF54715.1| probable RPA135-DNA-directed RNA polymerase I, 135 KD subunit
            [Ustilago hordei]
          Length = 1289

 Score =  915 bits (2365), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/1154 (43%), Positives = 693/1154 (60%), Gaps = 112/1154 (9%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
             R+   +YTGKL A + +     G P   E    G  PV++++ RC+L+G  S++LV+  
Sbjct: 176  ARERLFTYTGKLTARLCWSV--NGDPEQSEIVALGNCPVLVRSNRCNLRGMSSRELVAHH 233

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRK-DQ 156
            EEA E GGYF++NG ER+ R +I+ K N P ++ R SF  R   Y++KA+VIRC+ K D 
Sbjct: 234  EEANEFGGYFLVNGNERLIRYLIVAKANSPQAIERPSFEKRGPSYSNKAIVIRCLHKEDL 293

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
             SVT  ++YL NG + L F  + +EY++PV +VLKALVD  D EIF  +           
Sbjct: 294  ISVTNAVHYLHNGGLTLRFSWRKQEYMVPVVMVLKALVDATDKEIFASIV---------- 343

Query: 217  KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
            +G   +  +++RV+++L   +  SL +  QCL+++G  F+ V+   +  +   V   +I 
Sbjct: 344  QGDFENTFLTDRVELLLRNFKQYSLWSGHQCLEYLGSKFRVVLGCPEDWTDAQVGSELIH 403

Query: 277  DYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
                VHL+   +K+ +LIFM+QKL+SLV   S +DN DS Q+ EIL+PG L+   +KE++
Sbjct: 404  RIFLVHLDSPREKYKMLIFMVQKLYSLVAGESCADNADSPQHHEILMPGFLVGQIIKERI 463

Query: 337  EDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
            ++ +   +  I  ++    K  DF++   IKK + K  +  IG  I + L TG L++ +G
Sbjct: 464  DEAVGNIRSQIARDVRMKLKGVDFYDSRYIKKTIAK-VNIDIGVKIASFLATGNLSSPSG 522

Query: 397  LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
            LDLQQ +G+T+ AE+LNF R+++ FR+VHRGA FA L+TTSVRKLLPE+WGFLCPVHTPD
Sbjct: 523  LDLQQTSGFTIMAEKLNFARYLAHFRSVHRGAFFAELKTTSVRKLLPEAWGFLCPVHTPD 582

Query: 457  GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPA- 515
            G PCGLLNH + TCR+ +      +I            +L G+GM  +   +   G    
Sbjct: 583  GSPCGLLNHFSHTCRMTTRQPGVSHIH----------ALLSGLGMTEAAFAVGAVGAVGQ 632

Query: 516  --------VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGG 567
                    ++ V LDG V+G    +  + +   LR  K      +P DLE+G+VP S  G
Sbjct: 633  KHAGVRDNIVVVQLDGAVLGYTTPALAKHMATALRIWKTEGLHHVPLDLEIGFVPTSRAG 692

Query: 568  AYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPA 627
             YPGLYLF+S  + +RPVR +      +  I+++GPFEQV+++I C    D        +
Sbjct: 693  QYPGLYLFSSRARMMRPVRLL-----HNNKIDMVGPFEQVYLDIAC----DPAEIVPGVS 743

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH E+ PT +LSV+ANLTP+SD+NQSPRN YQ QM KQTMG +  A+  R D KLY +QT
Sbjct: 744  THVELAPTSILSVLANLTPFSDYNQSPRNCYQAQMMKQTMGTASTAVGRRTDNKLYRIQT 803

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
            PQTP+VR   Y KY  D+YP GTNAIVAV++YTGYDMEDAMILNKS+ +RG  +G +Y++
Sbjct: 804  PQTPVVRPELYNKYAFDDYPNGTNAIVAVISYTGYDMEDAMILNKSAHERGFGYGTVYKS 863

Query: 748  ETIDLSDDGNKVDRGQKL----FRRN-KDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYD 802
            ETIDL D   K           F  N K +++  +++D DGLPYVGQ +  GEP C+ +D
Sbjct: 864  ETIDLRDLKGKSSSSVPTLHFGFAPNYKASEAQRNILDQDGLPYVGQKVLAGEPICAYWD 923

Query: 803  KTTNSWRTNSRKGSESVFVDYVAV-----DMKNSKNLPQKANIRFRHTRNPIIGDKFSSR 857
            + +   +    KG E  +VD V +      M       QK  I  R TR+P+IGDKFSSR
Sbjct: 924  EVSGKTQFKKFKGDEYAYVDTVRLLGSDAGMGGGDGECQKVQIMLRITRSPVIGDKFSSR 983

Query: 858  HGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFM 917
            HGQKGVCSQ WP +DMPFS  +GM+PD+IINPHAFPSRMTI ML+ES+A K G++HG   
Sbjct: 984  HGQKGVCSQKWPAVDMPFS-ESGMQPDVIINPHAFPSRMTIGMLIESIAGKAGAMHGIAQ 1042

Query: 918  DATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFI 977
            D+TPF  S           E  +  +  GE L+  G+N+ G E +YSG+ G EL  +I++
Sbjct: 1043 DSTPFTFS-----------EDYTPTEFFGEQLKAAGYNHVGNEPMYSGITGQELRADIYL 1091

Query: 978  GPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLL 1037
            G VYYQRLRHMV+DKFQVR+TG +  +TRQPIKGRKR GGIRFGEMERD+LLAHG +Y+L
Sbjct: 1092 GVVYYQRLRHMVNDKFQVRTTGPVHALTRQPIKGRKRAGGIRFGEMERDALLAHGTSYML 1151

Query: 1038 HDRLHTCSDYHVADVCSLCGSVLTATFIHPQKR-----AIREIG----GLPPARAPKKVT 1088
             DRL  CSDY  + VC  CGS+L+  F + Q +     AI  I     G  P   P    
Sbjct: 1152 QDRLMNCSDYSTSYVCRTCGSLLSVGFDNSQSQSNGGGAITTIDITTQGTTPILGPNGEY 1211

Query: 1089 CHACQ---------------------------------------TSKGMETVAMPYVFRY 1109
            C  C+                                       T   ++ VA+PYV +Y
Sbjct: 1212 CRVCRAEDEVRRQQGLEPLRGKRMPVGGVEGYIGISQSNVINNVTGGDLDVVAVPYVLKY 1271

Query: 1110 LAAELAAMNIKITL 1123
            L AELAAM IK++ 
Sbjct: 1272 LVAELAAMGIKMSF 1285


>gi|320165771|gb|EFW42670.1| DNA-directed RNA polymerase I complex subunit Rpa2 [Capsaspora
            owczarzaki ATCC 30864]
          Length = 1126

 Score =  915 bits (2365), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/1101 (44%), Positives = 678/1101 (61%), Gaps = 77/1101 (6%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR+   +Y   L   ++++  D   PV +     GQ P+M+K++RC+L+     +LV+ +
Sbjct: 89   CRERASTYKSDLHVTLKWKVDDG--PVNQTERKLGQIPIMVKSQRCNLRDLSPTELVANQ 146

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EEA EMGGYFI+NG+ER+ R ++LP++NY M++ R SFR R   YT    +IRC R DQ+
Sbjct: 147  EEAEEMGGYFIINGIERIMRMLLLPRRNYVMALDRPSFRKRGPEYTTFGTMIRCTRLDQT 206

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            S T+ +++L +G+  + F  +  EYL+P  ++LKALV T D EIF  +            
Sbjct: 207  SQTITVHFLQDGNCMVRFSYRKNEYLVPAVLILKALVTTTDQEIFERI------------ 254

Query: 218  GAVGSP----LVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAET 273
              VGS      +++RV+++L    D+ +    Q    +GE F+  +D  +  S   V   
Sbjct: 255  --VGSSKLDSFLTDRVELMLRSATDMHVHNSKQARVFLGERFRIALDVPEDMSDEDVGRL 312

Query: 274  VIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLK 333
            ++R  + +HL+++ DKF+LL+FM+QKL+ +V     ++N DS  N EIL  G L  ++LK
Sbjct: 313  LLRKLMLIHLDNDQDKFDLLVFMIQKLYKVVSGDCCTENADSPMNHEILTSGQLYLMFLK 372

Query: 334  EKLEDWLRKGKKLIQDEIENNGKKFDFFNLAN-IKKVMEKNPSKQIGTSIETMLKTGRLA 392
            EK+E++L   K ++  ++  N ++  F   +    K + KNP   IG  +E ++ TG LA
Sbjct: 373  EKMEEYLTACKAVVAQDLRRNPEQVSFSAGSQYFTKSLSKNPV-DIGRRLEYLMATGNLA 431

Query: 393  TQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPV 452
            + TGLDLQQ +G+TV A++LNFLR++S FR +HRGA FA ++TT+VRKLLPE+WGF+CPV
Sbjct: 432  SATGLDLQQVSGFTVVADKLNFLRYLSHFRCIHRGAFFAEMKTTTVRKLLPEAWGFVCPV 491

Query: 453  HTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSG 512
            HTPDG PCGLLNH+ + C V         + D S+    +  +LI +GM P   K+    
Sbjct: 492  HTPDGAPCGLLNHLAAKCLVVD------EVADASR----VPAMLIELGMAPIDHKI--HY 539

Query: 513  PPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGL 572
            P   L+VLLDGR++G +      ++ AH R  K      +P  +E   V  S  G +PGL
Sbjct: 540  PSDYLNVLLDGRIIGKLAPENAAQITAHFRYRKAQGHKDLPRYMESALVLPSERGQFPGL 599

Query: 573  YLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPA--THE 630
            ++FTS  + VRPV+N+      +  +E IG FEQV+M+I   +       +  P   TH 
Sbjct: 600  FIFTSLCRMVRPVQNLI-----ANTVEYIGSFEQVYMDIAVLEA------DIVPGVTTHH 648

Query: 631  EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQT 690
            E+ PT MLSV A +TPYSDHNQSPRNMYQCQM KQTMG    AL+ R+D KLY +  PQ 
Sbjct: 649  ELSPTAMLSVNALMTPYSDHNQSPRNMYQCQMGKQTMGTPAHALQHRSDNKLYRVMNPQA 708

Query: 691  PIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETI 750
             +VR   Y  Y  D YP+GTNA++A ++YTGYDMEDAMI+NK S DRG  +  IY+T+ +
Sbjct: 709  SLVRPQGYEDYKCDNYPSGTNAVIAFVSYTGYDMEDAMIINKGSYDRGFGYATIYKTQIV 768

Query: 751  DLSD--DGNKVDRGQKLF---RRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTT 805
            DL+    GN+ +    L+    RN+   +   V ++DG P +  ++  G P CS  D+TT
Sbjct: 769  DLAKLKPGNRENSKPTLYFGTVRNQREVTEKQV-EADGFPPLETVLKNGAPICSYVDETT 827

Query: 806  NSWRTNSRKGSESVFVDYVA-VDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVC 864
            N  +    K SE  ++  +  +  + S    Q+A IRFR  RNP+IGDKF+SRHGQKGVC
Sbjct: 828  NMAQVVKYKSSEEGYLHEIKLIAGEGSDQRAQRAIIRFRLRRNPVIGDKFASRHGQKGVC 887

Query: 865  SQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFAN 924
            SQLWP   MPF   +GM PD++ NPH FPSRMTI M +E++A K  +LHG   DA+PF  
Sbjct: 888  SQLWPSEGMPFCE-SGMVPDILFNPHGFPSRMTIGMWIETMAGKSAALHGVVHDASPFV- 945

Query: 925  SVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQR 984
                       +E    VD  GE L   G+NY+G E +YSGV G E   EIF+G VYYQR
Sbjct: 946  ----------FNEKSRAVDYFGEQLAKAGYNYYGSERMYSGVTGKEFDAEIFMGVVYYQR 995

Query: 985  LRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTC 1044
            LRHMV DK+QVR+TG +  +T QPIKGRKR GGIRFGEMERDSLLAHG A+LLHDRL  C
Sbjct: 996  LRHMVLDKYQVRTTGPVHNLTHQPIKGRKRAGGIRFGEMERDSLLAHGTAFLLHDRLMNC 1055

Query: 1045 SDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMP 1104
            SDY  + VC  CGS+L+     P      +I G       + V C +CQ+SK +E +A+P
Sbjct: 1056 SDYSYSYVCKACGSILS-----PMLEQATQISG------KRNVKCRSCQSSKNVEIIAVP 1104

Query: 1105 YVFRYLAAELAAMNIKITLQL 1125
            YVFRYL +EL AMNI++TL +
Sbjct: 1105 YVFRYLLSELLAMNIRVTLDV 1125


>gi|331233519|ref|XP_003329420.1| DNA-directed RNA polymerase I subunit A2 [Puccinia graminis f. sp.
            tritici CRL 75-36-700-3]
 gi|309308410|gb|EFP85001.1| DNA-directed RNA polymerase I subunit A2 [Puccinia graminis f. sp.
            tritici CRL 75-36-700-3]
          Length = 1224

 Score =  915 bits (2364), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/1139 (44%), Positives = 684/1139 (60%), Gaps = 102/1139 (8%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
             R+  ++Y GK+ A V +  L+ G P    R +FG  P+M+K+ +C+L+     KLVS  
Sbjct: 134  ARERLVTYAGKISAKVTWS-LNNGPPQNEYR-DFGLLPIMVKSEKCNLKQMSPAKLVSHH 191

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EE+ EMGGYF++NG E++ R +I+P++N+ +S++R SF +R   YT  A  IRCVR DQ+
Sbjct: 192  EESEEMGGYFVVNGNEKIIRCLIVPRRNHVISLIRPSFVNRGNFYTTYATQIRCVRPDQT 251

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            S T  L+YL NG++   F  +  E+++PV ++LKAL+  +D EIF +L           +
Sbjct: 252  SQTNTLHYLSNGTITFRFSWRKSEFMVPVVMLLKALIGASDQEIFTNLA----------Q 301

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
             A      ++R++++L   Q  SL T   CL  +G  F+ V+          +   +++ 
Sbjct: 302  NAFEDTFRTDRIELMLRNFQYYSLPTASACLDFLGSKFKVVLGCPDDWGSEQIGRYLLQR 361

Query: 278  YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
             + VHL D   K+ LL+FM+QKL++LV     +DNPDS Q+QEILLPGHL++  LKE+ E
Sbjct: 362  IVLVHLKDPISKYRLLLFMIQKLYALVAGECCADNPDSPQHQEILLPGHLLSSILKERFE 421

Query: 338  DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
            ++L   +  I  E+  +     F +   + K + K  S  IG  +   L TG L + TGL
Sbjct: 422  EYLGGIQAQITSEVRKSTTGVTFSDNKFVTKAIGKVYS-DIGRRVTFFLATGNLVSPTGL 480

Query: 398  DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDG 457
            DLQQ +G+T+ AE+LNF R+IS FR VHRGA FA L+TT+VRKLLPE+WGFLCPVHTPDG
Sbjct: 481  DLQQTSGFTIIAEKLNFYRYISHFRCVHRGAFFAELKTTTVRKLLPEAWGFLCPVHTPDG 540

Query: 458  EPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVL 517
             PCGLLNH    C++ +   S  NI            +L+ +GM  S P      P   +
Sbjct: 541  SPCGLLNHFAHKCKILTSAPSVKNIPS----------LLLSLGM--SQPFDTTIHPSKFV 588

Query: 518  SVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTS 577
            SV LDG ++G   SS   ++   LR  K      IP +LE+G VP S GG YPGL+LF++
Sbjct: 589  SVQLDGEIIGWASSSLCSRMATALRTWKTEGLENIPLELEIGLVPRSKGGQYPGLFLFST 648

Query: 578  PPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCP-DGGDGGRRNAFPATHEEIHPTG 636
            P + +RPV+ +S     ++  +L+G FEQV+M+I C  +  D G      +TH EI PT 
Sbjct: 649  PARMMRPVQLLS-----NKKTDLVGSFEQVYMDIACSQEEIDPGF-----STHVEISPTH 698

Query: 637  MLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTN 696
            +LS++ANLTP+SD NQSPRNMYQCQM+KQTMG     +  R D KLY LQT QTPIVR  
Sbjct: 699  VLSLLANLTPFSDFNQSPRNMYQCQMSKQTMGTPSGVIHHRTDNKLYRLQTGQTPIVRPA 758

Query: 697  TYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDG 756
             +  Y +D +P GTNA+VAV++YTGYDMEDAMILNKS+ +RG  HG +Y++  +DLS +G
Sbjct: 759  LHDVYQMDHFPNGTNAVVAVISYTGYDMEDAMILNKSAHERGFAHGMVYKSMIVDLSPEG 818

Query: 757  NKVDRGQKLFRRNKDAKSLHSV--------IDSDGLPYVGQMIHPGEPYCSIYDKTTNSW 808
            ++    +K F   K      S         +DSDG+  VG  +  G+P C+  D+TT   
Sbjct: 819  SRTS-SEKHFGIGKSFGGSESSAFNRMCDKLDSDGVALVGSRVRSGDPLCAYVDRTTGKT 877

Query: 809  RTNSRKGSESVFVDYVAV---DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCS 865
                 KG E  FV+ V +   D+ + +    K + + R  R+P+IGDKFSSRHGQKGVCS
Sbjct: 878  SFEKYKGDEEAFVEEVRMIGGDVPSKEC--TKIHFKLRVPRSPVIGDKFSSRHGQKGVCS 935

Query: 866  QLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANS 925
            Q WP IDMPFS  +G++PD+IINPHAFPSRMTI M +ES+A K G++HG   DATPF   
Sbjct: 936  QKWPSIDMPFS-ESGIQPDVIINPHAFPSRMTIGMFVESLAGKAGAMHGIAQDATPFR-- 992

Query: 926  VKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRL 985
                      +E  +     GE LR  G+NYHG E +YSG+ G E   +I+IG VYYQRL
Sbjct: 993  ---------FNEQDTPSAYFGEQLRAAGYNYHGNEPMYSGITGKEFEADIYIGLVYYQRL 1043

Query: 986  RHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCS 1045
            RHMV DK+QVR+TG +D++TRQP+KGRKRGGGIRFGEMERD+LLAHG ++LL DRL  CS
Sbjct: 1044 RHMVGDKWQVRTTGKVDKLTRQPVKGRKRGGGIRFGEMERDALLAHGTSFLLQDRLMNCS 1103

Query: 1046 DYHVADVCSLCGSV------------LTATFIHPQK-RAIREIGGLPPARAPKKVTCHAC 1092
            DY  A +C  CG +            L  T  H Q  +A  +       R P+   C  C
Sbjct: 1104 DYSTAWICKRCGLLSSLGYDTSDDLGLAPTSQHHQAHQAEPKFSSSVKMRGPRGEYCRQC 1163

Query: 1093 ---------------------------QTSKGMETVAMPYVFRYLAAELAAMNIKITLQ 1124
                                       Q +  M+ +A+PYVFRYL AEL AM IKI LQ
Sbjct: 1164 EPDFPLKAAEHALPNTQNGQSLESLSGQLTNHMDVIAIPYVFRYLVAELMAMGIKIALQ 1222


>gi|255731632|ref|XP_002550740.1| DNA-directed RNA polymerase I 135 kDa polypeptide [Candida tropicalis
            MYA-3404]
 gi|240131749|gb|EER31308.1| DNA-directed RNA polymerase I 135 kDa polypeptide [Candida tropicalis
            MYA-3404]
          Length = 1166

 Score =  915 bits (2364), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/1102 (44%), Positives = 689/1102 (62%), Gaps = 66/1102 (5%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
             CR+  ++Y  +LM +V +   D     V E    GQ P+MLK+ RCHL+     +LV  
Sbjct: 107  ECRERMVTYRSRLMLNVTWSVNDGEE--VSEVREAGQIPIMLKSNRCHLEKLTPNQLVEA 164

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
            KEE+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R   YT   + IRCVR DQ
Sbjct: 165  KEESDELGGYFIVNGIEKLIRMLIVQRRNHPMALIRPSFGNRGASYTKYGIQIRCVRPDQ 224

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
            +S T  L+YL +G+V   F  +  EYL+PV ++LKALV+TND EIF+ +           
Sbjct: 225  TSQTNVLHYLNDGNVTFRFSWRKNEYLVPVTMILKALVETNDREIFDGIV---------- 274

Query: 217  KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
                G+  +++R++++L   +  +L ++ + L ++G+ F+ V       S   V + V++
Sbjct: 275  GNDTGNSFLTDRLELLLRTYKKYNLNSQQETLAYLGDKFRVVFGATPDMSDIDVGKEVLK 334

Query: 277  DYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
              + VHL DN DKF +L+FM++KL+SLV      DNPD+ Q+QE+LL G L  + +KEK+
Sbjct: 335  RIVLVHLPDNTDKFRMLLFMIRKLYSLVAGDCAPDNPDATQHQEVLLGGFLYGMIIKEKI 394

Query: 337  EDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
            E++L+  K  IQ +I N G   +F +   + +V  +  ++ IG  ++  L TG L +Q+G
Sbjct: 395  EEYLQNIKLQIQSDI-NRGVGINFDDRKYMTRVFSR-INENIGQKLQYFLSTGNLVSQSG 452

Query: 397  LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
            LDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPVHTPD
Sbjct: 453  LDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAELKTTTVRKLLPESWGFLCPVHTPD 512

Query: 457  GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAV 516
            G PCGLLNH+   C++A+         D S++  ++ +  +GV     LP    +  P +
Sbjct: 513  GSPCGLLNHLAHKCKIATV------ASDVSQVPKALTQ--LGV-----LPADSFAAGPDL 559

Query: 517  LSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFT 576
              V LDG++VG     + + V   LR  KV  +  +P DLE+GYVP S  G YPGLYLF 
Sbjct: 560  CCVQLDGKIVGWTTHKQGKIVADTLRFWKVEGSHGLPLDLEIGYVPPSNKGQYPGLYLFG 619

Query: 577  SPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEEIHPT 635
               + +RPV+ + L  ++     ++GPFEQV+M +   P+  +         +H E  PT
Sbjct: 620  GHSRMMRPVKYLPLDKQD-----ILGPFEQVYMNVAVTPEEIENNVH-----SHVEFSPT 669

Query: 636  GMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRT 695
             +LS++ANLTP+SD NQSPRNMYQCQM KQTMG    AL  R+D KLY LQT QTPIV+ 
Sbjct: 670  NILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGTALVHRSDNKLYRLQTGQTPIVKA 729

Query: 696  NTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD 755
            N Y  YG+D +P G NAIVAV++YTGYDM+DAMI+NKS+ +RG  +G +Y+TE IDLS  
Sbjct: 730  NLYDDYGMDNFPNGMNAIVAVISYTGYDMDDAMIINKSADERGFGYGTVYKTEKIDLSQS 789

Query: 756  GNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR 813
              + D   + F    D   ++    +D+DGLP +G  +  G+P  + YD T    +  + 
Sbjct: 790  RRRGDPITQHFGFGTDEWPEAWKEKLDADGLPMIGVKVEAGDPIVAYYDDTLGKTKVKTY 849

Query: 814  KGSESVFVDYVA-VDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDID 872
              SE  +++ V  +  + S    Q+  I++R TR P+IGDKFSSRHGQKGVCS+ WP ID
Sbjct: 850  HSSEPGYIEEVKLLGDETSDQEGQQLTIKYRITRAPLIGDKFSSRHGQKGVCSRKWPQID 909

Query: 873  MPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGD 932
            MPF+  +GM+PD+IINPHAFPSRMTI M +ES+A K G+LHG   D+TP+          
Sbjct: 910  MPFTE-SGMQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPWK--------- 959

Query: 933  TGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDK 992
               +E  +  D  GE L   G+NYHG E +YSG  G EL C+I+IG VYYQRLRHMV+DK
Sbjct: 960  --FNEQDTPADYFGEQLLKAGYNYHGNEPMYSGATGEELRCDIYIGCVYYQRLRHMVNDK 1017

Query: 993  FQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADV 1052
            FQVRSTG ++ +T QP+KGRKR GGIR GEMERD+L+ HG ++LL DRL  CSDY    V
Sbjct: 1018 FQVRSTGPVNSLTMQPVKGRKRSGGIRVGEMERDALIGHGTSFLLQDRLLNCSDYTQTPV 1077

Query: 1053 CSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTS-----------KGMET- 1100
            C  CGS+LT     P+  ++  I     A +  K   +A                G +T 
Sbjct: 1078 CRSCGSILTTQTTVPRIGSMATIRCRRCAVSLDKYDGYAADADIWEDGQGKKFVGGDDTT 1137

Query: 1101 -VAMPYVFRYLAAELAAMNIKI 1121
             VA+P+V +YL +EL+AM IK+
Sbjct: 1138 AVAIPFVLKYLDSELSAMGIKM 1159


>gi|291244544|ref|XP_002742157.1| PREDICTED: RNA polymerase I polypeptide B-like [Saccoglossus
            kowalevskii]
          Length = 1133

 Score =  915 bits (2364), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/1163 (43%), Positives = 696/1163 (59%), Gaps = 104/1163 (8%)

Query: 12   LRELVRHHIESFDYMLDEGLSEMFD----------------------------------- 36
            L+ELV+ HIESF++ML EGL+                                       
Sbjct: 25   LQELVKPHIESFNFMLSEGLNLAIQDMQPVEFALPSGEKVSLSFTDASIGVPTVAQGNIH 84

Query: 37   ---------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQG 87
                      CRQ   +Y  K+ A + ++ L+     ++E    G+ P+++K+  C+L  
Sbjct: 85   ALSLKVYPTECRQGGTTYKAKIRAHLCWK-LNNEVKAIKEIL-LGEVPILVKSNSCNLNK 142

Query: 88   ADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAV 147
                +L+   EE  EMGGYFI+NG+E+V R ++LP++N+PM++ R S+++R + YT+  V
Sbjct: 143  LSPSELIKKNEEVEEMGGYFIINGIEKVIRMIVLPRRNFPMALNRGSWKNRGKLYTEYGV 202

Query: 148  VIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTC 207
             +RCV+ DQ++V + L+YL NG+  L F    +++ +PV ++LKALVDT D  I++ L  
Sbjct: 203  SMRCVKPDQTAVNIILHYLTNGTAMLCFSYSKEQFFVPVVLILKALVDTTDQFIYDELMR 262

Query: 208  CYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESY 267
              D K    KG V           +L ++Q   LT++ + L+++GE F+  +      + 
Sbjct: 263  GKD-KNTYYKGCV---------TYMLRQIQTQGLTSQRKILEYLGEMFRVKLGLADWYTD 312

Query: 268  YAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
                E +I+  I VHL +N DKFN L++M++KLF+  +    ++N DS  NQE+L+ GHL
Sbjct: 313  RQNGEFLIKQCICVHLTNNMDKFNTLVYMVRKLFAFANGECAAENADSTMNQEVLMGGHL 372

Query: 328  ITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLK 387
              +YLKEK+ DWL   +  I+ + +  G+ F   N   +   + +     +  ++E +LK
Sbjct: 373  YLMYLKEKMVDWLVSVRYSIEKQAKVKGQSF-VLNSTTLNSAVGRT---NLSHAVEYLLK 428

Query: 388  TGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWG 447
            TG L ++TGL L Q  G TV A++LN++R++S FR +HRGA F+ +RTTSVR+LLPE+WG
Sbjct: 429  TGNLNSKTGLGLMQATGLTVVADKLNYVRYLSHFRCIHRGAFFSEMRTTSVRRLLPEAWG 488

Query: 448  FLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPK 507
            FLCPVHTPDG PCGLLNHM + C+V         + D  ++ + + R+L  +GM P+   
Sbjct: 489  FLCPVHTPDGAPCGLLNHMAALCQV---------VNDQPQV-SHLSRLLCNLGMTPT-DG 537

Query: 508  LVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS-LG 566
                 P     VLLDGRV+G +      ++   LR LKV     +P+ LEV  VP++   
Sbjct: 538  PSPGEPSECYDVLLDGRVLGKVDKEMAGELGNKLRILKVRKEHRVPEMLEVVLVPMTGKC 597

Query: 567  GAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFP 626
              YPGLYLF+S  + +RPV N++     +   E+IG FEQV+M I           +   
Sbjct: 598  SQYPGLYLFSSVARLMRPVLNLA-----TNTTEMIGTFEQVYMNIAV----TASEAHEGL 648

Query: 627  ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQ 686
             TH E+  +G+LS VA+LTP+SD NQSPRNMYQCQM KQTMG  V     R D KLY LQ
Sbjct: 649  TTHLELSESGLLSAVASLTPFSDFNQSPRNMYQCQMGKQTMGTPVHTYLHRTDNKLYRLQ 708

Query: 687  TPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQ 746
            TPQ+PIVR  +Y  Y ID YP GTNA+VAV++YTGYDMEDAMILNKSS +RG  HG IY+
Sbjct: 709  TPQSPIVRPCSYDTYNIDNYPLGTNAVVAVISYTGYDMEDAMILNKSSYERGFAHGTIYK 768

Query: 747  TETIDLSD-DGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTT 805
            TE IDL    G K      +F    D +     +D DGLP +G +I PG+P C   +  T
Sbjct: 769  TEVIDLKKISGEKGKSISLMFGCLPDDRRTEGHLDLDGLPPIGAIIEPGDPLCGYINVET 828

Query: 806  NSWRTNSRKGSESVFVDYVAV---DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKG 862
            N   T S K  E   VD V +   D+  ++   QK  I  R  RNP IGDKFSSRHGQKG
Sbjct: 829  NVANTLSFKHHERAVVDNVKLCGNDLGTAEC--QKVYISLRIQRNPTIGDKFSSRHGQKG 886

Query: 863  VCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPF 922
            VCSQLWP  +MPFS  +GM PD+I NPH FPSRMTI M++ES+A K GSLHG   DATPF
Sbjct: 887  VCSQLWPVENMPFSE-SGMTPDIIFNPHGFPSRMTIGMMIESMAGKSGSLHGLSHDATPF 945

Query: 923  ANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYY 982
              S           E +  +D  G MLR  G+NY+G E +YSGV G EL  +IF+G VYY
Sbjct: 946  TFS-----------EDRPAIDYFGRMLREAGYNYYGNERMYSGVDGRELEADIFVGIVYY 994

Query: 983  QRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLH 1042
            QRLRHMV DKFQVR+TG +D +T QP+KGRKR GGIRFGEMERD+LL+HG ++LL DRL 
Sbjct: 995  QRLRHMVEDKFQVRTTGPIDILTHQPVKGRKRAGGIRFGEMERDALLSHGTSFLLQDRLF 1054

Query: 1043 TCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVA 1102
             CSD     +C+ CGS      I  +K A+ E   +    +     C  C++++ ++ +A
Sbjct: 1055 HCSDSSTTQLCTKCGSF--QGIIQQKKSALLEGSSV---NSSGHWYCQMCKSAEHIQLLA 1109

Query: 1103 MPYVFRYLAAELAAMNIKITLQL 1125
            +PYVFRYL AELAAM+IK TLQ+
Sbjct: 1110 VPYVFRYLLAELAAMSIKTTLQV 1132


>gi|71005228|ref|XP_757280.1| hypothetical protein UM01133.1 [Ustilago maydis 521]
 gi|46096459|gb|EAK81692.1| hypothetical protein UM01133.1 [Ustilago maydis 521]
          Length = 1289

 Score =  914 bits (2363), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1145 (43%), Positives = 689/1145 (60%), Gaps = 94/1145 (8%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
             R+   +YTGKL A + +     G P   +    G  PV++++ RC+L+G  S++LV+  
Sbjct: 176  ARERLFTYTGKLTARLCWSV--NGDPEQSDIVTLGNCPVLVRSNRCNLRGMSSRELVAHH 233

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ- 156
            EEA E GGYF++NG ER+ R +I+ K N P ++ R SF  R   Y++KA+VIRC+ KD  
Sbjct: 234  EEANEFGGYFLVNGNERLIRYLIVAKANSPQAIERPSFEKRGPSYSNKAIVIRCLHKDDL 293

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
             SVT  ++YL NG + + F  + +EY++PV +VLKALVD  D EIF  +           
Sbjct: 294  ISVTNAVHYLHNGGLTMRFSWRKQEYMVPVVMVLKALVDATDKEIFASIV---------- 343

Query: 217  KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
            +G   +  +++RV+++L   +  SL +  QCL+++G  F+ V+   +  +   V   +I 
Sbjct: 344  QGDFENTFLTDRVELLLRNFKQYSLWSGHQCLEYLGSKFRVVLGCPEDYTDAQVGTELIS 403

Query: 277  DYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
              + VHL+   DK+ +LIFM+QKL+SLV   S +DN DS Q+ EIL+PG L+   +KE++
Sbjct: 404  RILLVHLDSPRDKYKMLIFMIQKLYSLVAGESCADNADSPQHHEILMPGFLVGQIIKERI 463

Query: 337  EDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
            ++ +   +  I  ++    K  DFF+   IKK + K  +  IG  I + L TG L++ +G
Sbjct: 464  DEAVGNIRAQIARDVRMKVKGLDFFDSKYIKKTVSK-VNIDIGVKIASFLATGNLSSPSG 522

Query: 397  LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
            LDLQQ +G+T+ AE+LNF R+++ FR+VHRGA FA L+TTSVRKLLPE+WGFLCPVHTPD
Sbjct: 523  LDLQQTSGFTIMAEKLNFARYLAHFRSVHRGAFFAELKTTSVRKLLPEAWGFLCPVHTPD 582

Query: 457  GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAV 516
            G PCGLLNH + TCR+ +      +I         +      +G + +  +        +
Sbjct: 583  GSPCGLLNHFSHTCRMTTRQPDVSHIHALLS-GLGMTEAAFAIGAVGAASQRDTDARDNM 641

Query: 517  LSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFT 576
            + V LDG ++G    +  + +   LR  K      +P DLE+G+VP S  G YPGLYLF+
Sbjct: 642  VVVQLDGAILGYTTPALAKHMATALRIWKTEGLHHVPLDLEIGFVPTSRAGQYPGLYLFS 701

Query: 577  SPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTG 636
            +  + +RPVR +      +  I+++GPFEQV+++I C    D        +TH E+ PT 
Sbjct: 702  NRARMMRPVRLL-----HNNKIDMVGPFEQVYLDIAC----DPQEVVPGVSTHVELAPTS 752

Query: 637  MLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTN 696
            +LSV+ANLTP+SD+NQSPRN YQ QM KQTMG +  A+  R D KLY +QTPQTP+VR  
Sbjct: 753  ILSVLANLTPFSDYNQSPRNCYQAQMMKQTMGTASTAVSRRTDNKLYRIQTPQTPVVRPE 812

Query: 697  TYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDG 756
             Y KYG D+YP GTNAIVAV++YTGYDMEDAMILNKS+ +RG  +G +Y++ETIDL D  
Sbjct: 813  LYNKYGFDDYPNGTNAIVAVISYTGYDMEDAMILNKSAHERGFGYGTVYKSETIDLRDLK 872

Query: 757  NKVDRGQKLFR-----RNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTN 811
             K               ++  ++  +++D DGLPY+GQ +  GEP C+ +D+ +      
Sbjct: 873  GKSSSSVPTLHFGFAPNSRPTEAQRAILDQDGLPYIGQKVMAGEPICAYWDEVSGKTMFK 932

Query: 812  SRKGSESVFVDYVAVDMKNSKNLP-----QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQ 866
              KG E  +VD V +   ++ +       QK  I  R TR+P+IGDKFSSRHGQKGVCSQ
Sbjct: 933  KFKGDEYAYVDTVRLLGSDAGSGGGDSECQKVQIMLRITRSPVIGDKFSSRHGQKGVCSQ 992

Query: 867  LWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSV 926
             WP +DMPFS  +GM+PD+IINPHAFPSRMTI ML+ES+A K G++HG   D+TPF  S 
Sbjct: 993  KWPAVDMPFSE-SGMQPDVIINPHAFPSRMTIGMLIESIAGKAGAMHGIAQDSTPFTFS- 1050

Query: 927  KKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLR 986
                      E  +  +  GE L+  G+N+ G E +YSG+ G EL  +I++G VYYQRLR
Sbjct: 1051 ----------EDFTPTEFFGEQLKAAGYNHVGNEPMYSGITGQELRADIYLGVVYYQRLR 1100

Query: 987  HMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSD 1046
            HMV+DKFQVR+TG +  +TRQPIKGRKR GGIRFGEMERD+LLAHG +Y+L DRL  CSD
Sbjct: 1101 HMVNDKFQVRTTGPVHALTRQPIKGRKRAGGIRFGEMERDALLAHGTSYMLQDRLMNCSD 1160

Query: 1047 YHVADVCSLCGSVLTATFIHPQKR-----AIREIG----GLPPARAPKKVTCHACQTS-- 1095
            Y  + VC  CGS+L+  F           AI  I     G  P   P    C  C+    
Sbjct: 1161 YSTSYVCRTCGSLLSVGFDTSASSRHGGGAISTIDVTTQGTTPILGPNGEFCRVCRAEDE 1220

Query: 1096 ----KGME---------------------------------TVAMPYVFRYLAAELAAMN 1118
                +G+E                                  VA+PYV +YL AELAAM 
Sbjct: 1221 VRHQQGLEPLRGKRQPIGGVEATIAIPQSNVINSLSGGDLDVVAVPYVLKYLVAELAAMG 1280

Query: 1119 IKITL 1123
            IK++ 
Sbjct: 1281 IKMSF 1285


>gi|343427009|emb|CBQ70537.1| probable RPA135-DNA-directed RNA polymerase I, 135 KD subunit
            [Sporisorium reilianum SRZ2]
          Length = 1290

 Score =  911 bits (2355), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/1155 (42%), Positives = 694/1155 (60%), Gaps = 113/1155 (9%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
             R+   +YTGKL A + +     G P   +  + G  PV++++ RC+L+G  S++LV+  
Sbjct: 176  ARERLFTYTGKLTARLCWSV--NGDPEQSDIVSLGNCPVLVRSNRCNLRGMSSRELVAHH 233

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ- 156
            EE+ E GGY+++NG ER+ R +I+ K N P ++ R SF  R   Y++KA+VIRC+ KD  
Sbjct: 234  EESNEFGGYYLVNGNERLIRYLIVAKANSPQAIERPSFEKRGPSYSNKAIVIRCLHKDDL 293

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
             SVT  ++YL NG + L F  + +EY++PV +VLKALVD  D EIF  +           
Sbjct: 294  ISVTNAVHYLHNGGLTLRFSWRKQEYMVPVVMVLKALVDATDKEIFASIV---------- 343

Query: 217  KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
            +G   +  +++RV+++L   +  SL +  QCL+++G  F+ V+   +  +   V   +I 
Sbjct: 344  QGDFENTFLTDRVELLLRNFKQYSLWSGHQCLEYLGSKFRVVLGCPEDWNDAQVGSELIH 403

Query: 277  DYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
                VHL+   +KF +LIFM+QKL+SLV   S +DN DS Q+ EIL+PG L+   +KE++
Sbjct: 404  RIFLVHLDSPREKFKMLIFMIQKLYSLVAGESCADNADSPQHHEILMPGFLVGQIIKERI 463

Query: 337  EDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
            ++ +   +  I  ++    K  DF++   +KK + K  +  IG  I + L TG L++ +G
Sbjct: 464  DEAVGNIRAQIARDVRMKVKGLDFYDTRYVKKTVSK-VNIDIGVKIASFLATGNLSSPSG 522

Query: 397  LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
            LDLQQ +G+T+ AE+LNF R+++ FR+VHRGA FA L+TTSVRKLLPE+WGFLCPVHTPD
Sbjct: 523  LDLQQTSGFTIMAEKLNFARYLAHFRSVHRGAFFAELKTTSVRKLLPEAWGFLCPVHTPD 582

Query: 457  GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV------- 509
            G PCGLLNH + TCR+ +      +I            +L G+GM  +   +        
Sbjct: 583  GSPCGLLNHFSHTCRMTTRQPDVSHIH----------ALLSGLGMTEAAFAVGAVGAAAQ 632

Query: 510  -KSGPPA---VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
              SG  A   V+ V LDG ++G    +  + +   LR  K      +P DLE+G+VP S 
Sbjct: 633  KSSGANASDNVVVVQLDGAILGYTTPALAKHMATALRIWKTEGLHHVPLDLEIGFVPTSR 692

Query: 566  GGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAF 625
             G YPGLYLF++  + +RPVR +      +  I+L+GPFEQV+++I C    D       
Sbjct: 693  AGQYPGLYLFSNRARMLRPVRLL-----HNNRIDLVGPFEQVYLDIAC----DPSEIIPG 743

Query: 626  PATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHL 685
             +TH E+ PT +LSV+ANLTP+SD+NQSPRN+YQ QM KQTMG +  ++  R D KLY +
Sbjct: 744  ISTHVELAPTSILSVLANLTPFSDYNQSPRNVYQAQMMKQTMGTASTSVSRRTDNKLYRI 803

Query: 686  QTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIY 745
            QTPQTP+VR   Y KYG D+YP GTNA+VAV++YTGYDMEDAMILNKS+ +RG  +G +Y
Sbjct: 804  QTPQTPVVRNELYNKYGFDDYPNGTNAVVAVISYTGYDMEDAMILNKSAHERGFGYGTVY 863

Query: 746  QTETIDLSDDGNKVDRGQ------KLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCS 799
            ++ET+DL D   K                ++  ++  +++D DGLPYVGQ +  GEP C+
Sbjct: 864  KSETVDLRDLKGKASSSSVPTLHFGFAPNSRPTEAQRAILDQDGLPYVGQKVLAGEPICA 923

Query: 800  IYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLP-----QKANIRFRHTRNPIIGDKF 854
             +D+ +        KG E  +VD V +   ++ +       QK  I  R TR+P+IGDKF
Sbjct: 924  YWDEVSGKTMFKKFKGDEYAYVDTVRLLGSDAGSGGGDSECQKVQIMLRITRSPVIGDKF 983

Query: 855  SSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHG 914
            SSRHGQKGVCSQ WP +DMPFS  +GM+PD+IINPHAFPSRMTI ML+ES+A K G++HG
Sbjct: 984  SSRHGQKGVCSQKWPAVDMPFSE-SGMQPDVIINPHAFPSRMTIGMLIESIAGKAGAMHG 1042

Query: 915  KFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCE 974
               D+TPF  S           E  +  +  GE L+  G+N+ G E +YSG+ G EL  +
Sbjct: 1043 IAQDSTPFTFS-----------EDFTPTEFFGEQLKAAGYNHVGNEPMYSGITGQELRAD 1091

Query: 975  IFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAA 1034
            I++G VYYQRLRHMV+DKFQVR+TG +  +TRQPIKGRKR GGIRFGEMERD+LLAHG +
Sbjct: 1092 IYLGVVYYQRLRHMVNDKFQVRTTGPVHALTRQPIKGRKRAGGIRFGEMERDALLAHGTS 1151

Query: 1035 YLLHDRLHTCSDYHVADVCSLCGSVLTATF---IHPQKRAI----REIGGLPPARAPKKV 1087
            Y+L DRL  CSDY  + VC  CGS+L+  F         A+    R   G  P   P   
Sbjct: 1152 YMLQDRLMNCSDYSTSYVCRTCGSLLSVGFDASAASHGGAVSSIDRTTQGTTPILGPNGE 1211

Query: 1088 TCHACQ---------------------------------------TSKGMETVAMPYVFR 1108
             C  C+                                       T   ++ VA+PYV +
Sbjct: 1212 FCRVCRAEDEVRRQQGLEPLRGKRLPVGGVEAHIGIPHSNVISNVTGGDLDVVAVPYVLK 1271

Query: 1109 YLAAELAAMNIKITL 1123
            YL AELAAM IK++ 
Sbjct: 1272 YLVAELAAMGIKMSF 1286


>gi|448537526|ref|XP_003871349.1| Rpa135 RNA polymerase I subunit A135 [Candida orthopsilosis Co
            90-125]
 gi|380355706|emb|CCG25224.1| Rpa135 RNA polymerase I subunit A135 [Candida orthopsilosis]
          Length = 1166

 Score =  911 bits (2354), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/1114 (44%), Positives = 690/1114 (61%), Gaps = 92/1114 (8%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPV-VRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
            CR+   +Y  +LM +V +   D      +RE    GQ P+MLK+ RCHLQ     +LV  
Sbjct: 108  CRERMTTYKARLMLNVTWSVNDGEEQSEIREA---GQIPIMLKSNRCHLQKMSPNQLVEA 164

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
            KEE+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R   YT   + IR VR DQ
Sbjct: 165  KEESDELGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFANRGASYTKYGIQIRSVRPDQ 224

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
            +S T  L+YL +G+V   F  +  EYL+PV ++LKALV+TND EIF+ +   +D      
Sbjct: 225  TSQTNVLHYLNDGNVTFRFSWKKNEYLVPVVMILKALVETNDREIFDGIVG-HD------ 277

Query: 217  KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
               V +  +++R++++L   +  +L ++ + L ++G+ F+ V       S   V + V+R
Sbjct: 278  ---VENSFLTDRLELLLRTFKSYNLHSQQETLAYLGDKFRVVFGATPDVSDIDVGKEVLR 334

Query: 277  DYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
              + VHL +N DKF +L+FM++KL+SLV      DNPD+ Q+QE+LL G L  + +KEK+
Sbjct: 335  RIVLVHLPNNEDKFRMLLFMIRKLYSLVAGDCAPDNPDATQHQEVLLGGFLYGMIIKEKI 394

Query: 337  EDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
            +++L+  K  +Q +I N G   +F +   I +V  +  ++ IG  ++  L TG L +Q+G
Sbjct: 395  DEYLQNFKLQVQSDI-NRGVGVNFSDRKYITRVFSR-INENIGQKLQYFLSTGNLVSQSG 452

Query: 397  LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
            LDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPVHTPD
Sbjct: 453  LDLQQVSGYTVVAEKINFHRFISHFRMVHRGSFFAELKTTTVRKLLPESWGFLCPVHTPD 512

Query: 457  GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAV 516
            G PCGLLNH++  C +A+         D S++  ++ +  +GV      P    +  P +
Sbjct: 513  GSPCGLLNHLSHKCIIAT------TASDVSQVPAALAQ--LGVS-----PANAFAAGPDL 559

Query: 517  LSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFT 576
              V LDG++VG     + + V   LR  KV     +P DLE+GYVP S  G YPGLYLF 
Sbjct: 560  CCVQLDGKIVGWTTHEQGKIVADTLRFWKVEGTHGLPLDLEIGYVPPSSKGQYPGLYLFG 619

Query: 577  SPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEEIHPT 635
               + +RPV+ + L  E+     ++GPFEQV+M +   P+  +         +H E  PT
Sbjct: 620  GHSRMMRPVKYLPLGKED-----IVGPFEQVYMNVAVTPEEIENNIH-----SHVEFSPT 669

Query: 636  GMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRT 695
             +LS++ANLTP+SD NQSPRNMYQCQM KQTMG    AL  R+D KLY LQT QTPIV+ 
Sbjct: 670  NILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGTALVHRSDNKLYRLQTGQTPIVKA 729

Query: 696  NTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD 755
            N Y  YG+D +P G NAIVAV++YTGYDM+DAMI+NKS+ +RG  +G +Y+ E IDLS  
Sbjct: 730  NLYDDYGMDNFPNGMNAIVAVISYTGYDMDDAMIINKSADERGFGYGTVYKVEKIDLSQS 789

Query: 756  GNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR 813
              + D   + F   +D   ++  + +D DG P +G  +  G+P  + YD T    +  + 
Sbjct: 790  RRRGDPITQHFGFGEDEWPETWKTKLDDDGFPLIGVKVEEGDPILAYYDDTLGKTKVKTY 849

Query: 814  KGSESVFVDYVAVDMKNS-KNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDID 872
              SE  +++ V +   ++  N  Q+  I++R TR PIIGDKFSSRHGQKGVCS+ WP ID
Sbjct: 850  HSSEPAYIEEVKLLGDDAGDNEGQQVTIKYRITRQPIIGDKFSSRHGQKGVCSRKWPQID 909

Query: 873  MPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGD 932
            MPF+  +GM+PD+IINPHAFPSRMTI M +ES+A K G+LHG   DATP+  S       
Sbjct: 910  MPFTE-SGMQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGVAQDATPWKFS------- 961

Query: 933  TGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDK 992
                ES +  D  GE L   G+N+HG E +YSG  G EL C+I+IG VYYQRLRHMV+DK
Sbjct: 962  ----ESDTPADYFGEQLLKAGYNFHGNEPMYSGATGEELRCDIYIGCVYYQRLRHMVNDK 1017

Query: 993  FQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADV 1052
            FQVRSTG ++ +T QP+KGRKR GGIR GEMERD+L+ HG AYLL DRL  CSDY    +
Sbjct: 1018 FQVRSTGPVNSLTMQPVKGRKRSGGIRVGEMERDALIGHGTAYLLQDRLLNCSDYTQTSI 1077

Query: 1053 CSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHAC-----------------QTS 1095
            C  CGS+LT       + ++  IG +   R      C  C                 +  
Sbjct: 1078 CKSCGSILTT------QTSVPRIGSMASIR------CRRCSIRLDKYDGYAEDADIWEDG 1125

Query: 1096 KGME--------TVAMPYVFRYLAAELAAMNIKI 1121
             G++        TVA+P+V +YL +EL+AM IK+
Sbjct: 1126 HGVKFVGGDNTTTVAIPFVLKYLDSELSAMGIKM 1159


>gi|440793499|gb|ELR14681.1| DNAdirected RNA polymerase, beta subunit [Acanthamoeba castellanii
            str. Neff]
          Length = 1139

 Score =  910 bits (2352), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/1122 (43%), Positives = 683/1122 (60%), Gaps = 94/1122 (8%)

Query: 27   LDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQ 86
            LDE L    + CR+   +Y G  +A + ++    G  V R +   G+ P+M+K+ +CHL 
Sbjct: 88   LDEKLYP--NECREGGFTYNGLCVATIGYK---VGEKVGRLQRTMGKIPLMVKSNKCHLD 142

Query: 87   GADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKA 146
            G    +LV  +EE  E+GGYFI+NGLE++ R + +PK+N+     R S+  +   YT   
Sbjct: 143  GMSPAELVKAREEGTELGGYFIINGLEKLIRLICMPKRNF-----RPSWAGKGNYYTQHG 197

Query: 147  VVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLT 206
            V IR VRKDQS+  + L+YL NGS  L   +  +EY +P  ++LKAL+ T D EI+N L 
Sbjct: 198  VQIRSVRKDQSNQNMTLHYLSNGSCSLRISVFKQEYFIPGILILKALISTTDREIYNSLV 257

Query: 207  CCYDEKYKKEKGAVGSPLVSERVKIILAEVQDL-SLTTRLQCLQHIGEHFQPVIDGLQSE 265
                      +G V +  +++RV++IL E +   ++ T+ QCL ++G  F+  +   +  
Sbjct: 258  ----------RGDVENTFLTDRVEVILREAKSYENMETKEQCLAYLGSSFRIALRVPERM 307

Query: 266  SYYAVAETVIRDYIFVHLN--DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILL 323
            +   V + ++  YIFVHLN   N  KF+LL FM++KL+SL       DN DS  N E+LL
Sbjct: 308  TDIEVGQFLLDRYIFVHLNPQKNKQKFDLLAFMIRKLYSLASGEIGPDNADSPMNFELLL 367

Query: 324  PGHLITIYLKEKLEDWLRKGKKLIQDEIE-----NNGKKFDFFNLANIKKVMEKNPSKQI 378
            PGH+  ++LKEK+++WL  G KLI +++        G  ++      ++K MEKN    +
Sbjct: 368  PGHVYLMFLKEKMQEWL-VGVKLILNKLHAMPSAKAGLTWESDPEGYLRKAMEKN--FDL 424

Query: 379  GTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSV 438
            G  ++  L TG L + TG+ L Q  GY V AE+LN+LR+ S FR VHRGA FA ++TT+V
Sbjct: 425  GKKVDYFLATGNLISSTGMGLMQLNGYVVVAEKLNWLRYFSHFRCVHRGAFFATMKTTAV 484

Query: 439  RKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIG 498
            RKL+PESWGF CPVHTPDG PCGL+NH+T+ CR+ ++   + + R  + +       L+ 
Sbjct: 485  RKLMPESWGFFCPVHTPDGAPCGLINHLTAVCRLITH---QADTRRMASL-------LVS 534

Query: 499  VGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEV 558
            +G+ P+   ++       L V LDG ++G IP +   ++V  LR LKV     IP  LE+
Sbjct: 535  LGVSPASQSILFPSD-QYLDVFLDGELMGFIPHAAAPQLVEKLRYLKVKKLEDIPWTLEL 593

Query: 559  GYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGD 618
            G VP  +   YPGLY++T+P + +RPV+ ++     + +IE IG FEQV+M I   D   
Sbjct: 594  GLVPAGVSKQYPGLYMWTTPSRMMRPVKYLA-----TGDIEYIGSFEQVYMNIAVLDED- 647

Query: 619  GGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRA 678
              R++    TH+EI P  MLSVVA LTP+ D NQSPRNMYQCQMAKQ++     + + R 
Sbjct: 648  --RKDKDIFTHQEIRPMNMLSVVAGLTPFCDMNQSPRNMYQCQMAKQSIATPCHSFQHRT 705

Query: 679  DQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRG 738
            D K+Y +Q PQ P+ RTN Y +Y +D+YP G NAIVAVL+YTGYDMEDAMI+NK++  RG
Sbjct: 706  DNKIYRIQNPQAPVSRTNVYDEYELDDYPIGANAIVAVLSYTGYDMEDAMIINKAAYQRG 765

Query: 739  MCHGQIYQTETIDLSDDGNKVDRGQKL---FRRNKDAKSLH------------SVIDSDG 783
              H  +Y+ E +D +    K D  + +      +KD +++               ++ DG
Sbjct: 766  FGHASVYKNELVDFARKEKKGDAPKYIANPLVEDKDQQAMDEDGMQPAKKRFCEELEEDG 825

Query: 784  LPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFR 843
            LP  G  +  G P+    D  T     +  K  E   VD V V   +SK L Q+ +I+ R
Sbjct: 826  LPAPGTRLEAGSPFYVTVDGGTGKPHLHRYKSKEEAVVDEVRVVGTSSKGLIQRVSIKLR 885

Query: 844  HTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLE 903
              RNP+IGDKF+SRHGQKGV SQLWP  +MPFS  +GM PD+IINPHAFPSRMTIAML+E
Sbjct: 886  LNRNPVIGDKFASRHGQKGVMSQLWPQENMPFSE-SGMSPDVIINPHAFPSRMTIAMLIE 944

Query: 904  SVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLY 963
            S+A+K G+LHG F DATPF             DE  + VD  G+ L   G+NY+G E +Y
Sbjct: 945  SMASKSGALHGMFQDATPFR-----------FDEKHTAVDYFGQQLLAAGYNYYGNEPMY 993

Query: 964  SGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEM 1023
            SG+ G EL  +I++G VYYQRLRHMV DK+QVRSTG + Q+T+QPIKGR++GGGIRFGEM
Sbjct: 994  SGILGCELRADIYLGVVYYQRLRHMVKDKYQVRSTGPVHQLTQQPIKGRQKGGGIRFGEM 1053

Query: 1024 ERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARA 1083
            ERD LLAHG ++LL DRL  CSDY  +  C  CGS+++                 P    
Sbjct: 1054 ERDCLLAHGTSFLLQDRLFKCSDYSRSWACKGCGSIIS-----------------PVNTK 1096

Query: 1084 PKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
             +KV C  C++  G+  + +PYVFRYL  ELAAMNI+IT+ +
Sbjct: 1097 DRKVMCTFCESKDGVTAITIPYVFRYLVNELAAMNIRITMNI 1138


>gi|367010772|ref|XP_003679887.1| hypothetical protein TDEL_0B05470 [Torulaspora delbrueckii]
 gi|359747545|emb|CCE90676.1| hypothetical protein TDEL_0B05470 [Torulaspora delbrueckii]
          Length = 1196

 Score =  909 bits (2349), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/1128 (44%), Positives = 689/1128 (61%), Gaps = 98/1128 (8%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
              RQ   SY GKLM  +++   D    V  E  + G  P+ML++ RCHL      +LV  
Sbjct: 117  EARQRLSSYRGKLMLKLKWSVNDGNDEVFTEVRDCGGLPIMLQSNRCHLNKLSPAELVQC 176

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
            KEE+ E+GGYFI+NG+E++ R +I+ ++N+PM++VR SF +R   Y+   + IRCVR DQ
Sbjct: 177  KEESDEVGGYFIVNGIEKLIRMLIVQRRNHPMAIVRPSFANRGASYSQYGIQIRCVRPDQ 236

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
            +S T  L+YL +G V   F  +  EYL+PV ++LKAL DT+D EIF+             
Sbjct: 237  TSQTNVLHYLNDGQVTFRFSWRKNEYLVPVIMILKALCDTSDREIFD------------- 283

Query: 217  KGAVGS----PLVSERVKIILAEVQDL--SLTTRLQCLQHIGEHFQPVIDGLQSESYYAV 270
             G +GS      +++R++++L   +     L  R Q LQ++G+ F+ V      +S Y V
Sbjct: 284  -GIIGSDTKNSFLTDRLELLLTGFRKRYPQLKNRRQILQYLGDKFRVVFQASPDKSDYEV 342

Query: 271  AETVIRDYIFVHLN--DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
             + V+   + VHLN   N DKF +++FM++KL+SLV      DNPD+ Q+QE+LL G L 
Sbjct: 343  GQEVLDRIVLVHLNGESNKDKFFMMLFMIRKLYSLVAGECCPDNPDATQHQEVLLGGFLY 402

Query: 329  TIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKT 388
             + +KEK+E++L+     I+ +I N G   +F +   + +V+ +  ++ IG+ ++  L T
Sbjct: 403  GMIIKEKIEEYLQNIVAQIRTDI-NRGLSTNFKDRKYVSRVLMR-VNENIGSKLQYFLST 460

Query: 389  GRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGF 448
            G L +Q+GLDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGF
Sbjct: 461  GNLVSQSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGF 520

Query: 449  LCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKL 508
            LCPVHTPDG PCGLLNH    CR+++         D SK    I  +L  +G+ P+    
Sbjct: 521  LCPVHTPDGSPCGLLNHFAHKCRIST------KQSDVSK----IPSILFSLGVSPASQTF 570

Query: 509  VKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV-IPDDLEVGYVPLSLGG 567
                  ++  V LDGR++G +   + + +   LR  KV   +  +P DLE+GYVP S  G
Sbjct: 571  AAGA--SLCCVQLDGRIIGWVSHEQGKIIADTLRFWKVEGKTAGLPLDLEIGYVPPSTRG 628

Query: 568  AYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPA 627
             YPGLY+F    + +RPVR + L  E+     ++GPFEQV+M I         + N    
Sbjct: 629  QYPGLYIFGGRSRMMRPVRYLPLDKED-----IVGPFEQVYMNIAVTP--QELQNNVH-- 679

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH E  PT +LS++ANLTP+SD NQSPRNMYQCQM KQTMG    AL  R+D KLY LQT
Sbjct: 680  THVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQT 739

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
             QTPIV+ N Y  YG+D +P G NA+VAV++YTGYDM+DAMI+NKS+ +RG  +G +Y+ 
Sbjct: 740  GQTPIVKANLYDDYGMDNFPNGMNAVVAVISYTGYDMDDAMIINKSADERGFGYGTMYKV 799

Query: 748  ETIDLSDDGNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTT 805
            E IDLS + ++ D   + F    D   K     +D DGLPY+G  +  G+P C+ +D T 
Sbjct: 800  EKIDLSLNRSRGDPISQHFGFGTDEWPKEWMEKLDEDGLPYIGTYVEEGDPICAYFDDTL 859

Query: 806  NSWRTNSRKGSESVFVDYVAVDMKNSKNLP--QKANIRFRHTRNPIIGDKFSSRHGQKGV 863
            N  +  +   SE  +++ V +    S  LP  Q  +I++R  R P IGDKFSSRHGQKGV
Sbjct: 860  NKTKIKTYHSSEPAYIEEVNLIGDESNKLPELQTVSIKYRIRRVPQIGDKFSSRHGQKGV 919

Query: 864  CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFA 923
            CS+ WP IDMPFS  TG++PD+IINPHAFPSRMTI M +ES+A K G+LHG   DATP+ 
Sbjct: 920  CSRKWPTIDMPFSE-TGIQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDATPWT 978

Query: 924  NSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQ 983
                        +ES +  D  G+ LR  G+NYHG E +YSGV G EL  +I+IG VYYQ
Sbjct: 979  -----------FNESDTPADYFGDQLRAAGYNYHGNEPMYSGVTGEELRADIYIGVVYYQ 1027

Query: 984  RLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHT 1043
            RLRHMV+DKFQVRSTG ++ +T QP+KGRKR GGIR GEMERD+L+ HG A+LL DRL  
Sbjct: 1028 RLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIGHGTAFLLQDRLLN 1087

Query: 1044 CSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVT--------------- 1088
            CSDY    VC  CG++LT       ++++  IG +   R  +                  
Sbjct: 1088 CSDYTQTSVCRECGAILTT------QQSVPRIGSMSSVRCRRCAIKFEDVKKMLNKYQGD 1141

Query: 1089 -------CHACQTSKGME--------TVAMPYVFRYLAAELAAMNIKI 1121
                    H  +  +G +        TVA+P+V +YL +ELAAM I++
Sbjct: 1142 ESVFIDDSHIWEDGQGNKYVGGGETTTVAIPFVLKYLDSELAAMGIRL 1189


>gi|406607667|emb|CCH40939.1| DNA-directed RNA polymerase I subunit A2 [Wickerhamomyces ciferrii]
          Length = 1171

 Score =  909 bits (2349), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/1105 (44%), Positives = 687/1105 (62%), Gaps = 74/1105 (6%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
             R+  +SY GKL+  V +   D     V E    GQ P+MLK+ RCHL+     +LV+ K
Sbjct: 113  ARERMVSYRGKLLIKVCWSVNDEEE--VSEIREVGQIPIMLKSNRCHLEKLSPDQLVAQK 170

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EE+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R   Y+   + IR VR DQ+
Sbjct: 171  EESDELGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFTNRGASYSQFGIQIRSVRPDQT 230

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            S T  L+YL +G+V   F  +  EYL+PV ++LKALV+TND EIF+              
Sbjct: 231  SQTNVLHYLNDGNVTFRFSWKKNEYLVPVMMILKALVETNDREIFD-------------- 276

Query: 218  GAVGSPL----VSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAET 273
            G VGS L    +++R++++L   +   L +  + L ++G+ F+ V +     S   V + 
Sbjct: 277  GIVGSDLDNSFLTDRLELLLRSFKTYKLHSNQETLAYLGDKFRVVFNATPDVSDVEVGKE 336

Query: 274  VIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLK 333
            V++  + VHL+ N DKF +L+FM++KL++LV      DNPD+ Q+QE+LL G L  + +K
Sbjct: 337  VLKRIVLVHLDSNRDKFRMLLFMIRKLYTLVAGDCSPDNPDATQHQEVLLGGFLYGMIIK 396

Query: 334  EKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLAT 393
            EK+E++L   +  IQ +I N G   +F +   + +V  +  ++ IG  ++  L TG L +
Sbjct: 397  EKIEEYLNNIRLQIQSDI-NRGIAINFNDRKYMSRVFMR-INENIGQKLQYFLSTGNLVS 454

Query: 394  QTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVH 453
            Q+GLDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPVH
Sbjct: 455  QSGLDLQQVSGYTVVAEKINFHRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVH 514

Query: 454  TPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGP 513
            TPDG PCGLLNH    C +++         D SK    +   L  +G+ P+    V +  
Sbjct: 515  TPDGSPCGLLNHFAHKCSIST------QASDVSK----VPEALSALGVSPAH---VFAAG 561

Query: 514  PAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLY 573
            P V  V LDG++VG     + + V   LR  KV     +P DLE+GYVP S  G YPGLY
Sbjct: 562  PNVACVQLDGKIVGWTTHDQAKIVADTLRFWKVEGKHGLPLDLEIGYVPPSAKGQYPGLY 621

Query: 574  LFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEEI 632
            +F    + +RPVR + L  ++     ++GPFEQV+M++   P+  +         +H E 
Sbjct: 622  IFGGHSRMMRPVRYLPLDKQD-----IVGPFEQVYMDVAVTPEEIENNVH-----SHVEF 671

Query: 633  HPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPI 692
             PT +LS++ANLTP+SD NQSPRNMYQCQM KQTMG    AL  R+D KLY LQ+ QTPI
Sbjct: 672  TPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALVHRSDNKLYRLQSGQTPI 731

Query: 693  VRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDL 752
            V+ N Y +YG+D +P GTNA+VAV++YTGYDM+DAMI+NKS+ +RG  +G +Y+ E +DL
Sbjct: 732  VKANLYDEYGMDNFPNGTNAVVAVISYTGYDMDDAMIINKSADERGFGYGTVYKVEKVDL 791

Query: 753  SDDGNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRT 810
            S    + D   + F    D   K   + +D+DGLP +G  +  G+P  + YD+T    + 
Sbjct: 792  SQSRRRGDPITQHFGFGTDEWPKEWRNFLDTDGLPMIGGRVEEGDPIVAYYDETVGKTKV 851

Query: 811  NSRKGSESVFVDYVA-VDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWP 869
             +   SE  F++ V  +   N  +  Q+  I++R TR+P+IGDKFSSRHGQKGVCS+ WP
Sbjct: 852  KTYHSSEGAFIEEVKLLGDDNGDSEFQQLTIKYRITRSPLIGDKFSSRHGQKGVCSRKWP 911

Query: 870  DIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKT 929
             +D+PF+  TGM+PD+IINPHAFPSRMTI M +ES+A K G+LHG   D+TP+  S    
Sbjct: 912  TVDLPFTE-TGMQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPWTFS---- 966

Query: 930  NGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMV 989
                   ES +  D  GE LR  G+NYHG E +YSG  G EL C+I+IG VYYQRLRHMV
Sbjct: 967  -------ESDTPADYFGEQLRKSGYNYHGNEPMYSGATGEELRCDIYIGVVYYQRLRHMV 1019

Query: 990  SDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHV 1049
            +DKFQVRSTG ++ +T QP+KGRKR GGIR GEMERD+L+ HG A+LL DRL   SDY  
Sbjct: 1020 NDKFQVRSTGPVNSLTMQPVKGRKRSGGIRVGEMERDALIGHGTAFLLQDRLLNSSDYTQ 1079

Query: 1050 ADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTS-------------K 1096
              +C  CGS+L      P+  A   I     +   +  +  A ++S              
Sbjct: 1080 TSICRGCGSLLATQTSVPRIGAAATIRCRNCSSKFEHTSTQADESSIWEDGQGNKFVGGN 1139

Query: 1097 GMETVAMPYVFRYLAAELAAMNIKI 1121
               TVA+P+V +YL +ELAAM I++
Sbjct: 1140 NTTTVAIPFVLKYLDSELAAMGIRM 1164


>gi|254566671|ref|XP_002490446.1| RNA polymerase I subunit A135 [Komagataella pastoris GS115]
 gi|238030242|emb|CAY68165.1| RNA polymerase I subunit A135 [Komagataella pastoris GS115]
 gi|328350840|emb|CCA37240.1| DNA-directed RNA polymerase I subunit A2 [Komagataella pastoris CBS
            7435]
          Length = 1165

 Score =  909 bits (2349), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/1112 (44%), Positives = 687/1112 (61%), Gaps = 85/1112 (7%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
             CR+  I+Y  + M  V +   D   P   E    GQ PVMLK+ RCHL+     +LV  
Sbjct: 105  ECRERMITYKSRFMLKVCWSVNDG--PEETEIREAGQIPVMLKSNRCHLEKMSPNELVKN 162

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
            KEE+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R + YT   + IR VR DQ
Sbjct: 163  KEESDELGGYFIVNGIEKLVRMLIVQRRNHPMALIRPSFGNRGDSYTQFGIQIRAVRPDQ 222

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
            +S T  L+YL +G+V   F  +  EYL+PV ++LKALV+TND EIF+             
Sbjct: 223  TSQTNVLHYLKDGNVTFRFSWRKNEYLVPVPMILKALVETNDREIFD------------- 269

Query: 217  KGAVGS----PLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAE 272
             G VGS      +++R++++L   +   L ++ + L ++G+ F+ V +     S   V +
Sbjct: 270  -GIVGSETSNSFLTDRLELLLRNYKHYKLVSKQETLAYLGDKFRVVFNATPDVSDVDVGK 328

Query: 273  TVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYL 332
             V+R  + VHL DN DKF LL+FM++KL++LV      DNPD+ Q+QE+LL G L  + +
Sbjct: 329  EVLRRIVLVHLPDNRDKFRLLLFMIRKLYALVSGDCCPDNPDATQHQEVLLGGFLYGMII 388

Query: 333  KEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLA 392
            KEK+E++L   +  IQ +I N G   +F     + +V ++  ++ IG  ++  L TG L 
Sbjct: 389  KEKIEEYLASIRLQIQTDI-NRGYPVNFDEPKYMSRVFQR-INENIGKKLQYFLSTGNLV 446

Query: 393  TQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPV 452
            +QTGLDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPV
Sbjct: 447  SQTGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAELKTTTVRKLLPESWGFLCPV 506

Query: 453  HTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSG 512
            HTPDG PCGLLNH+   C++++         D SK    + +VL  +G+  S   +  +G
Sbjct: 507  HTPDGSPCGLLNHLAHKCKIST------EESDVSK----VPKVLSKLGV--SANHVFAAG 554

Query: 513  PPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGL 572
            P  +  V LDG++VG     + + V   LR  KV     IP DLEVG+VP S  G YPGL
Sbjct: 555  P-QMCCVQLDGKIVGWCTHEQAKIVADTLRFWKVEGGHGIPLDLEVGHVPPSSRGQYPGL 613

Query: 573  YLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEE 631
            YLF    +  RPVR + L  E+     +IGPFEQ ++ I   P+  +         +H E
Sbjct: 614  YLFGGRARMTRPVRYLPLDKED-----IIGPFEQAYINIAVTPEEIESNVH-----SHVE 663

Query: 632  IHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTP 691
              PT +LS++ANLTP+SD NQSPRNMYQCQM KQTMG    AL  R+D KLY LQT QTP
Sbjct: 664  FSPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALVHRSDNKLYRLQTGQTP 723

Query: 692  IVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETID 751
            IV+ N Y  YG+D +P GTNA+VAV++YTGYDM+DAMI+NKSS +RG  +G +Y+ E ID
Sbjct: 724  IVKANLYDDYGMDNFPNGTNAVVAVISYTGYDMDDAMIINKSSDERGFGYGTMYKVEVID 783

Query: 752  LSDDGNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWR 809
            L+D   K D   + F    D   +S    +D DGLP +G +++ G+P  + YD T    +
Sbjct: 784  LADSRRKGDPITQHFGFGTDEWPESWKQNLDEDGLPAIGTLVNEGDPIVAYYDDTLGKTK 843

Query: 810  TNSRKGSESVFVDYVAV---DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQ 866
              +   SE  +++ V +   D+ +S+   Q   I++R TR P IGDKFSSRHGQKGVCS+
Sbjct: 844  VKTYHSSEPAYIEEVKLISDDLGDSE--LQMVTIKYRITRQPQIGDKFSSRHGQKGVCSR 901

Query: 867  LWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSV 926
             WP IDMPF+  TG++PD+IINPHAFPSRMTI M +ES+A K G+LHG   D+TP+    
Sbjct: 902  KWPQIDMPFTE-TGIQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPWK--- 957

Query: 927  KKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLR 986
                     +E  +  D  GE L + G+NYHG E +YSGV G EL  +I+IG VYYQRLR
Sbjct: 958  --------FNEDDTPADFFGEQLISAGYNYHGNEPMYSGVTGEELRADIYIGVVYYQRLR 1009

Query: 987  HMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSD 1046
            HMV+DKFQVRSTG ++ +T QP+KGRKR GGIR GEMERD+L+ HG A+LL DRL  CSD
Sbjct: 1010 HMVNDKFQVRSTGPVNSLTMQPVKGRKRNGGIRIGEMERDALIGHGTAFLLQDRLLNCSD 1069

Query: 1047 YHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGME------- 1099
            Y    +C  CGS+L      P+   I     +   R   K+      T+  M+       
Sbjct: 1070 YTQTSICKGCGSLLNTQTSVPR---IGTKAMIHCRRCSTKINDVTAGTTDDMDLWEDGQG 1126

Query: 1100 ----------TVAMPYVFRYLAAELAAMNIKI 1121
                      TVA+P+V +YL +EL+AM I++
Sbjct: 1127 NRYTGGNDTTTVAIPFVLKYLDSELSAMGIRM 1158


>gi|348507167|ref|XP_003441128.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 1
            [Oreochromis niloticus]
          Length = 1134

 Score =  909 bits (2348), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/1097 (44%), Positives = 676/1097 (61%), Gaps = 75/1097 (6%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR  + SY GK++ADV +        ++++  + G  P+M+K++ C+L G   ++LV   
Sbjct: 103  CRGRRCSYKGKIVADVSWSINGVPKGIIKQ--SLGHVPIMVKSKLCNLHGMSPKELVEHH 160

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EEA EMGGYFI+NG+E+V R +I+P++NYP++M R  +++R +GYT   + +RCVR++ +
Sbjct: 161  EEAEEMGGYFIVNGIEKVIRMLIMPRRNYPIAMSRPKWKNRGQGYTQYGISMRCVREEHT 220

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            ++ + L+YL NG+V L F  Q + + LP+G  LKALVD  D +I+  L         +E 
Sbjct: 221  AINMNLHYLENGTVMLNFIYQKELFFLPLGFALKALVDFTDFQIYQELI------KGRED 274

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
             +     VSE ++I+  E    + TTR + L ++GE F+  ++  +  +    A  ++ +
Sbjct: 275  NSFYKTCVSEMLRIVTEE----NCTTRSKVLNYLGERFRVKMNLPEWYTNEQCANFLLNE 330

Query: 278  YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
             I +HL  + +KF LL  M +KLF+      + +NPDS+  QE+L PG L  ++LKE+L 
Sbjct: 331  CICIHLKSDVEKFYLLCLMTRKLFTFAKQECMEENPDSIVCQEVLTPGQLYLMFLKERLT 390

Query: 338  DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
             WL      ++   +  G K      ++   +   N    +  S E +L TG L ++TGL
Sbjct: 391  AWLVS----VKLSFDKRGSKVTG-GWSSEMMIKMLNMGTDLTRSFEYLLATGNLQSKTGL 445

Query: 398  DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDG 457
             + Q  G  V A++LNF+R++S FR VHRGA+FA +RTTSVRKLLPESWGFLCPVHTPDG
Sbjct: 446  GMLQNTGLCVVADKLNFIRYLSHFRCVHRGAAFAKMRTTSVRKLLPESWGFLCPVHTPDG 505

Query: 458  EPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVL 517
            EPCGL+NHMT++C + +           +   TS+  +L  +G+ P     V   P    
Sbjct: 506  EPCGLMNHMTASCEIVA----------LTLSTTSLPGLLCSLGVTP-----VDGTPGRAF 550

Query: 518  S----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGA-YPGL 572
            +    V+LDG VVG + +     VV  LRR KV     IP   E+  VP +   + YPGL
Sbjct: 551  ADCYPVVLDGAVVGWVEADLAPVVVESLRRFKVLREKKIPPWTEIVLVPKTGKASLYPGL 610

Query: 573  YLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEI 632
            +LFT+P + VRPV+N++   +E     LIG FEQ+++ +   +     R      TH+E+
Sbjct: 611  FLFTTPCRMVRPVQNLAFGKQE-----LIGTFEQLYINVGILENEIEPRV----TTHQEL 661

Query: 633  HPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPI 692
             P  MLSVVAN  PYSDHNQSPRNMYQCQM KQTMGF + +   R+D KLY LQTPQ+P+
Sbjct: 662  FPHSMLSVVANFIPYSDHNQSPRNMYQCQMGKQTMGFPLHSFMDRSDNKLYRLQTPQSPL 721

Query: 693  VRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDL 752
            VR   Y  YG+D YP+GTNAIVAV++YTGYDMEDAMI+NKSS +RG  HG IY+TE +DL
Sbjct: 722  VRPYMYDHYGLDNYPSGTNAIVAVISYTGYDMEDAMIVNKSSWERGFAHGSIYKTELVDL 781

Query: 753  SDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNS 812
            ++     D G     +  D K +   +D+DGLP++G ++  G+P+ S  +  T     + 
Sbjct: 782  AEKVKGED-GVVFGTKPGDPK-VKEKLDADGLPFIGSVLQYGDPFYSYINLNTGQTFISY 839

Query: 813  RKGSESVFVDYVAVDMKN-SKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDI 871
             K  E+  VD + V   +      ++  I  R  RNP IGDKF+SRHGQKG+ S+LWP  
Sbjct: 840  YKSQEACIVDNIKVCSNDGGSGRFKRVCITVRVPRNPTIGDKFASRHGQKGILSRLWPAE 899

Query: 872  DMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNG 931
            DMPF+  +GM PD++ NPH FPSRMTI ML+ES+A K G+LHG   DATPF  S      
Sbjct: 900  DMPFTE-SGMTPDILFNPHGFPSRMTIGMLIESMAGKSGALHGLGHDATPFTFS------ 952

Query: 932  DTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSD 991
                 E  S +D  GE+LR  G+NY+G E LYSG+ G EL  +IFIG VYYQRLRHMVSD
Sbjct: 953  -----EENSALDYFGELLRAGGYNYYGTERLYSGLSGQELEADIFIGVVYYQRLRHMVSD 1007

Query: 992  KFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVAD 1051
            KFQVR+TG  D++T QP+ GR   GGIRFGEMERD+LLAHG+++LLHDRL  CSD  VA 
Sbjct: 1008 KFQVRTTGARDKVTNQPVGGRNVQGGIRFGEMERDALLAHGSSFLLHDRLFNCSDRSVAQ 1067

Query: 1052 VCSLCGSVLTATFIHPQKRAIREIGGLPPARAP---KKVTCHACQTSKGMETVAMPYVFR 1108
            VC  CGS+L+     P           PP  +    +K  C  C  S  +++V++PYVFR
Sbjct: 1068 VCVDCGSLLSPLLEKP-----------PPYWSSMRHRKTVCTLCGKSDSVDSVSVPYVFR 1116

Query: 1109 YLAAELAAMNIKITLQL 1125
            Y  AELAAMNIK+ L++
Sbjct: 1117 YFVAELAAMNIKVKLEV 1133


>gi|443895297|dbj|GAC72643.1| RNA polymerase I, second largest subunit [Pseudozyma antarctica T-34]
          Length = 1282

 Score =  908 bits (2347), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/1150 (42%), Positives = 690/1150 (60%), Gaps = 106/1150 (9%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
             R+   +YTGKL A + +     G P   E    G  PV++++ RC+L+G  S++LV+  
Sbjct: 175  ARERLFTYTGKLTARLCWSV--NGDPEQSEIVALGNCPVLVRSNRCNLRGMSSRELVAHH 232

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCV-RKDQ 156
            EEA E GGY+++NG ER+ R +I+ K N P ++ R SF  R   Y++KA+VIRC+ R D 
Sbjct: 233  EEANEFGGYYLVNGNERLIRYLIVAKANSPQAIERPSFEKRGPSYSNKAIVIRCLHRDDL 292

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
             SVT  ++YL NG + L F  + +EY++PV +VLKALVD  D EIF  +           
Sbjct: 293  ISVTNAVHYLHNGGLTLRFSWRKQEYMVPVVMVLKALVDATDKEIFASIV---------- 342

Query: 217  KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
            +G   +  +++RV+++L   +  +L +  QCL+++G  F+ V+   +  +   V   +I 
Sbjct: 343  QGDFDNTFLTDRVELLLRNFKQYTLWSGHQCLEYLGSKFRVVLGCPEDWTDAQVGSELIH 402

Query: 277  DYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
                VHL+   +K+ +LIFM+QKL+SLV   S +DN DS Q+ EIL+PG L+   +KE++
Sbjct: 403  RIFLVHLDSPREKYKMLIFMIQKLYSLVAGESCADNADSPQHHEILMPGFLVGQIVKERI 462

Query: 337  EDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
            ++ +   +  I  ++    K  DF++   IKK + K  +  IG  I + L TG L++ +G
Sbjct: 463  DEAVGNIRAQIARDVRMKLKGVDFYDARYIKKSVAK-VNIDIGVKIASFLATGNLSSPSG 521

Query: 397  LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
            LDLQQ +G+T+ AE+LNF R+++ FR+VHRGA FA L+TTSVRKLLPE+WGFLCPVHTPD
Sbjct: 522  LDLQQTSGFTIMAEKLNFARYLAHFRSVHRGAFFAELKTTSVRKLLPEAWGFLCPVHTPD 581

Query: 457  GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAV 516
            G PCGLLNH + TCR+ +         D S +      +L  +GM  +   +        
Sbjct: 582  GSPCGLLNHFSHTCRMTTRQP------DVSHLHA----LLTSLGMTEAAFSVGGGSAHGA 631

Query: 517  ----LSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGL 572
                + V LDG ++G    +  + +   LR  K      +P DLE+G+VP S  G YPGL
Sbjct: 632  NKNNIVVQLDGAILGYTTPALAKHIATALRIWKTEGLHNVPLDLEIGFVPTSKSGQYPGL 691

Query: 573  YLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEI 632
            YLF++  + +RPVR +      +  I+L+GP+EQV+++I C    D        ++H E+
Sbjct: 692  YLFSNRSRMIRPVRLL-----HNNKIDLVGPYEQVYLDIAC----DPSEIIQGVSSHVEL 742

Query: 633  HPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPI 692
             PT +LSV+ANLTP+SD+NQSPRN+YQ QM KQTMG +  A+  R D KLY +Q+PQTP+
Sbjct: 743  APTSILSVLANLTPFSDYNQSPRNVYQTQMMKQTMGTASTAISRRTDNKLYRIQSPQTPV 802

Query: 693  VRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDL 752
            VR   Y KYG D+YP GTNAIVAV++YTGYDMEDAMILNKS+ +RG  +G +Y++ET+DL
Sbjct: 803  VRPELYNKYGFDDYPNGTNAIVAVISYTGYDMEDAMILNKSAHERGFGYGTVYKSETVDL 862

Query: 753  SDDGNKVDRGQKL-----FRRN-KDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN 806
             D   K            F  N + +++  +++D DGLPY+GQ +  GEP C+ +D+ + 
Sbjct: 863  RDLRGKAASASVPTLHFGFAPNYRASEAQRAILDQDGLPYIGQKVMAGEPICAYWDEVSG 922

Query: 807  SWRTNSRKGSESVFVDYVAVDMKNSKNLP-----QKANIRFRHTRNPIIGDKFSSRHGQK 861
                   KG E  +VD V +   +  +       QK  I  R TR+P+IGDKFSSRHGQK
Sbjct: 923  KTSFKKFKGDEYAYVDTVRLLGADGGSGGGDSECQKVQIMLRITRSPVIGDKFSSRHGQK 982

Query: 862  GVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATP 921
            GVCSQ WP +DMPFS  +GM+PD+IINPHAFPSRMTI ML+ES+A K G++HG   D+TP
Sbjct: 983  GVCSQKWPAVDMPFS-ESGMQPDVIINPHAFPSRMTIGMLIESIAGKAGAMHGLAQDSTP 1041

Query: 922  FANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVY 981
            F  S           E  +     GE L+  G+N+ G E +YSG+ G EL  +I++G VY
Sbjct: 1042 FTFS-----------EDFTPTQFFGEQLKAAGYNHVGNEPMYSGITGQELRADIYLGVVY 1090

Query: 982  YQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRL 1041
            YQRLRHMV+DKFQVR+TG +  +TRQPIKGRKR GGIRFGEMERD+LLAHG +Y+L DRL
Sbjct: 1091 YQRLRHMVNDKFQVRTTGPVHALTRQPIKGRKRAGGIRFGEMERDALLAHGTSYMLQDRL 1150

Query: 1042 HTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIG-------GLPPARAPKKVTCHACQ- 1093
              CSDY  + VC  CGS+L+  F H    A   +        G  P   P    C  C+ 
Sbjct: 1151 MNCSDYSTSYVCRTCGSLLSVGFDHSHSGAGGAMSTIDVTTQGTTPVLGPNGEFCRVCRA 1210

Query: 1094 --------------------------------------TSKGMETVAMPYVFRYLAAELA 1115
                                                  T   ++ VA+PYV +YL AELA
Sbjct: 1211 EDEVRRQQGLEPLRGKRQPIGGAEATIGIPAHNVINNVTGGDLDVVAVPYVLKYLVAELA 1270

Query: 1116 AMNIKITLQL 1125
            AM IK++  L
Sbjct: 1271 AMGIKMSFAL 1280


>gi|354544394|emb|CCE41117.1| hypothetical protein CPAR2_301060 [Candida parapsilosis]
          Length = 1166

 Score =  908 bits (2347), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/1118 (44%), Positives = 685/1118 (61%), Gaps = 92/1118 (8%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPV-VRERFNFGQFPVMLKTRRCHLQGADSQK 92
            M   CR+   +Y  +LM +V +   D      +RE    GQ P+MLK+ RCHLQ     +
Sbjct: 104  MPSECRERMTTYKARLMLNVTWSVNDGEEQSEIREA---GQIPIMLKSNRCHLQKMSPNQ 160

Query: 93   LVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCV 152
            LV  KEE+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R   YT   + IR V
Sbjct: 161  LVEAKEESDELGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFANRGASYTKFGIQIRSV 220

Query: 153  RKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEK 212
            R DQ+S T  L+YL +G+V   F  +  EYL+PV ++LKALV+TND EIF+ +   +D  
Sbjct: 221  RPDQTSQTNVLHYLNDGNVTFRFSWKKNEYLVPVVMILKALVETNDREIFDGIVG-HD-- 277

Query: 213  YKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAE 272
                   V +  +++R++++L   +   L ++ + L ++G+ F+ V       S   V +
Sbjct: 278  -------VENSFLTDRLELLLRTFKSYHLHSQQETLAYLGDKFRVVFGATPDVSDIDVGK 330

Query: 273  TVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYL 332
             V++  + VHL DN DKF +L+FM++KL+SLV      DNPD+ Q+QE+LL G L  + +
Sbjct: 331  EVLQRIVLVHLPDNKDKFRMLLFMIRKLYSLVAGDCAPDNPDATQHQEVLLGGFLYGMII 390

Query: 333  KEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLA 392
            KEK++++L+  K  +Q +I N G   +F +   I +V  +  ++ IG  ++  L TG L 
Sbjct: 391  KEKIDEYLQNFKLQVQSDI-NRGVGVNFSDRKYITRVFSR-INENIGQKLQYFLSTGNLV 448

Query: 393  TQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPV 452
            +Q+GLDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPV
Sbjct: 449  SQSGLDLQQVSGYTVVAEKINFHRFISHFRMVHRGSFFAELKTTTVRKLLPESWGFLCPV 508

Query: 453  HTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSG 512
            HTPDG PCGLLNH++  C +A+               T + +V   +  +   P    + 
Sbjct: 509  HTPDGSPCGLLNHLSHKCIIAT-------------SATDVSQVPAALAQLGVSPASAFAA 555

Query: 513  PPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGL 572
             P +  V LDG++VG     + + V   LR  KV     +P DLE+GYVP S  G YPGL
Sbjct: 556  GPNLCCVQLDGKIVGWTTHEQGKIVADTLRFWKVEGTHGLPLDLEIGYVPPSSKGQYPGL 615

Query: 573  YLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEE 631
            YLF    + +RPV+ + L  E+     ++GPFEQV+M +   P+  +         +H E
Sbjct: 616  YLFGGHSRMMRPVKYLPLGKED-----IVGPFEQVYMNVAVTPEEIENNVH-----SHVE 665

Query: 632  IHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTP 691
              PT +LS++ANLTP+SD NQSPRNMYQCQM KQTMG    AL  R+D KLY LQT QTP
Sbjct: 666  FSPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGTALVHRSDNKLYRLQTGQTP 725

Query: 692  IVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETID 751
            IV+ N Y  YG+D +P G NAIVAV++YTGYDM+DAMI+NKSS +RG  +G +Y+ E ID
Sbjct: 726  IVKANLYDDYGMDNFPNGMNAIVAVISYTGYDMDDAMIINKSSDERGFGYGTVYKVEKID 785

Query: 752  LSDDGNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWR 809
            LS    + D   + F    D   ++  + +D DG P +G  +  G+P  + YD T    +
Sbjct: 786  LSQSRRRGDPITQHFGFGDDEWPEAWKTKLDDDGFPVIGVKVEEGDPILAYYDDTLGKTK 845

Query: 810  TNSRKGSESVFVDYVAVDMKNS-KNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLW 868
              +   SE  +++ V +   ++  N  Q+  I++R TR PIIGDKFSSRHGQKGVCS+ W
Sbjct: 846  VKTYHSSEPAYIEEVKLLGDDAGDNEGQQVTIKYRITRQPIIGDKFSSRHGQKGVCSRKW 905

Query: 869  PDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKK 928
            P IDMPF+  +GM+PD+IINPHAFPSRMTI M +ES+A K G+LHG   DATP+  S   
Sbjct: 906  PQIDMPFTE-SGMQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGVAQDATPWKFS--- 961

Query: 929  TNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHM 988
                    ES +  D  GE L   G+N+HG E +YSG  G EL C+I+IG VYYQRLRHM
Sbjct: 962  --------ESDTPADYFGEQLLKAGYNFHGNEPMYSGATGEELRCDIYIGCVYYQRLRHM 1013

Query: 989  VSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYH 1048
            V+DKFQVRSTG ++ +T QP+KGRKR GGIR GEMERD+L+ HG A+LL DRL  CSDY 
Sbjct: 1014 VNDKFQVRSTGPVNSLTMQPVKGRKRSGGIRVGEMERDALIGHGTAFLLQDRLLNCSDYT 1073

Query: 1049 VADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHAC---------------- 1092
               +C  CGS+LT       + ++  IG +   R      C  C                
Sbjct: 1074 QTSICKSCGSILTT------QTSVPRIGSMASIR------CRRCSIRLDKYDSFAEDSDI 1121

Query: 1093 -QTSKGME--------TVAMPYVFRYLAAELAAMNIKI 1121
             +   G++        TVA+P+V +YL +EL+AM IK+
Sbjct: 1122 WEDGHGVKFVGGDNTTTVAIPFVLKYLDSELSAMGIKM 1159


>gi|350581976|ref|XP_003481167.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 [Sus scrofa]
          Length = 1079

 Score =  908 bits (2347), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/1123 (44%), Positives = 674/1123 (60%), Gaps = 88/1123 (7%)

Query: 12   LRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNF 71
            L+EL R H+ESF+Y + EGLS    H  QA IS+            ++  S  V ++F  
Sbjct: 35   LQELTRAHVESFNYAVREGLS----HAVQADISWA-----------VNGISKGVIKQF-L 78

Query: 72   GQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMV 131
            G  P+M+K++ C+L     + L+   EEA EMGGYFI+NG+E+V R +I+P++N+P++MV
Sbjct: 79   GYVPIMVKSKLCNLYSLSPRALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMV 138

Query: 132  RSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLK 191
            R  ++ R  GYT   V + CVR++ S+V + L+YL NG+V L F  + + + LP+G  LK
Sbjct: 139  RPKWKSRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALK 198

Query: 192  ALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHI 251
            ALV  +D +IF  L         KE  +     VS+ ++I++ E       T+ Q L ++
Sbjct: 199  ALVSFSDYQIFQELI------KGKEDDSFLRNSVSQMLRIVMEE----GCATQKQVLNYL 248

Query: 252  GEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSD 311
            GE F+  ++          AE +  + I +HL  N +KF +L  M +KLF+L     + +
Sbjct: 249  GERFRVKVNLPDWYPNEQAAEFLFNECICIHLKSNTEKFYMLCLMTRKLFALAKGECMEE 308

Query: 312  NPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVME 371
            NPDSL NQE+L PG L  ++LKEKLE WL   K  I  + +         N  N+ K++ 
Sbjct: 309  NPDSLVNQEVLTPGQLFLMFLKEKLEAWLVSIKIAIDKKAQKTSVSL---NTENLMKIL- 364

Query: 372  KNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFA 431
             N    +    E +L TG L ++TGL   Q +G  V A++LNF+R++S FR VHRGA FA
Sbjct: 365  -NLGIDLTKPFEYLLATGNLRSKTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFA 423

Query: 432  GLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS 491
             +RTT+VR+LLPESWGFLCPVHTPDGEPCGL+NH+T+TC V + +              S
Sbjct: 424  KMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTATCEVVTQF----------VYTAS 473

Query: 492  ILRVLIGVGMIPSLPKLVKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVS 547
            I  +L  +G+ P     V S P    S    VLLDG +VG         +   LR  KV 
Sbjct: 474  IPALLCSLGVTP-----VDSAPHRRYSECYPVLLDGVMVGWADKELAPSIADSLRHFKVL 528

Query: 548  AASVIPDDLEVGYVPLS-LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQ 606
                IP  +EV  +P++     YPGLYLFT+P + VRPV+N+ L  EE     LIG  EQ
Sbjct: 529  REKRIPPWMEVVLIPMTGKPSLYPGLYLFTTPCRLVRPVQNLGLGREE-----LIGTMEQ 583

Query: 607  VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQT 666
            +FM +   +        A   TH+E+ P  +LSV+AN  P+SDHNQSPRNMYQCQM KQT
Sbjct: 584  IFMNVAIFED----EVLAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQT 639

Query: 667  MGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMED 726
            MGF +   K R+D KLY LQTPQ+P+VR   Y  Y +D YP GTNAIVAV++YTGYDMED
Sbjct: 640  MGFPLLTFKDRSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMED 699

Query: 727  AMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPY 786
            AMILNK+S +RG  HG +Y++E IDLS+   + D       R  D +     +D DGLP+
Sbjct: 700  AMILNKASWERGFAHGSVYKSEFIDLSEKIKQGDDSLVFGVRPGDPRVAQK-LDDDGLPF 758

Query: 787  VGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHT 845
            VG  +  G+PY S  +  T        K  E+  VD + V   ++ +   K   I  R  
Sbjct: 759  VGAQLQYGDPYYSYLNLNTGESFVVYYKSKENCIVDNIKVCGNDTGSGRFKCVCITMRVP 818

Query: 846  RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
            RNP IGDKF+SRHGQKG+ S+LWP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+
Sbjct: 819  RNPTIGDKFASRHGQKGILSRLWPVEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESM 877

Query: 906  AAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSG 965
            A K  +LHG   DATPF  S           E  S ++  GEML+  G+NY+G E LYSG
Sbjct: 878  AGKSAALHGLCHDATPFIFS-----------EENSALEYFGEMLKAAGYNYYGTERLYSG 926

Query: 966  VYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMER 1025
            + G EL  +IFIG VYYQRLRHMVSDKFQVR+TG  D++T QPI GR   GGIRFGEMER
Sbjct: 927  ISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMER 986

Query: 1026 DSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP- 1084
            D+LLAHG ++LLHDRL  CSD  VA VC  CGS+L+     P           PP+ +  
Sbjct: 987  DALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKP-----------PPSWSAM 1035

Query: 1085 --KKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
              +K +C  C  S  ++TV++PYVFRY  AELAAMNIK+ L +
Sbjct: 1036 RNRKYSCSLCNRSDTIDTVSVPYVFRYFVAELAAMNIKVKLDI 1078


>gi|241957019|ref|XP_002421229.1| DNA-directed RNA polymerase I subunit, putative [Candida dubliniensis
            CD36]
 gi|223644573|emb|CAX40561.1| DNA-directed RNA polymerase I subunit, putative [Candida dubliniensis
            CD36]
          Length = 1166

 Score =  908 bits (2347), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/1102 (44%), Positives = 687/1102 (62%), Gaps = 66/1102 (5%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
             CR+  ++Y  +LM +V +   D     V E    GQ P+MLK+ RCHL+     +LV  
Sbjct: 107  ECRERMVTYRSRLMLNVTWSVNDGEE--VSEVREAGQIPIMLKSNRCHLEKLSPNQLVEA 164

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
            KEE+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R   YT   + IR VR DQ
Sbjct: 165  KEESDELGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFGNRGASYTKFGIQIRSVRPDQ 224

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
            +S T  L+YL +G+V   F  +  E+L+PV ++LKAL++TND EIF+ +     E     
Sbjct: 225  TSQTNVLHYLNDGNVTFRFSWRKNEFLVPVVMILKALIETNDREIFDGIVGNDTE----- 279

Query: 217  KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
                 +  +++R++++L   +  +L ++ + L ++G+ F+ V       S   V + V++
Sbjct: 280  -----NSFLTDRLELLLRTYKTYNLYSQQETLAYLGDKFRVVFGASPDMSDIEVGKEVLK 334

Query: 277  DYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
              + VHL +N DKF +L+FM++KL+SLV      DNPD+ Q+QE+LL G L  + +KEK+
Sbjct: 335  RIVLVHLPNNTDKFRMLLFMIRKLYSLVAGDCAPDNPDATQHQEVLLGGFLYGMIIKEKI 394

Query: 337  EDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
            E++L+  K  IQ +I N G   +F +   + +V  +  ++ IG  ++  L TG L +Q+G
Sbjct: 395  EEYLQNIKLQIQSDI-NRGVGINFDDRKYMTRVFSR-INENIGQKLQYFLSTGNLVSQSG 452

Query: 397  LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
            LDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPVHTPD
Sbjct: 453  LDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAELKTTTVRKLLPESWGFLCPVHTPD 512

Query: 457  GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAV 516
            G PCGLLNH++  C++A+         D S++  ++ +  +GV     LP    +  P +
Sbjct: 513  GSPCGLLNHLSHKCKIAT------EASDVSQVPKALTQ--LGV-----LPADSFAAGPNL 559

Query: 517  LSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFT 576
              V LDGR+VG     +   V   LR  KV+    +P DLE+GYVP S  G YPGLY+F 
Sbjct: 560  CCVQLDGRIVGWTTHEQGRIVADTLRYWKVNGGHGLPLDLEIGYVPPSNKGQYPGLYIFG 619

Query: 577  SPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEEIHPT 635
               + +RPVR + L  E+     ++GPFEQV+M +   P+  +         +H E  PT
Sbjct: 620  GRSRMMRPVRYLPLDKED-----IVGPFEQVYMNVAVTPEEIENNIH-----SHVEFTPT 669

Query: 636  GMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRT 695
             +LS++ANLTP+SD NQSPRNMYQCQM KQTMG    AL  R+D KLY LQT QTPIV+ 
Sbjct: 670  NILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGTALVHRSDNKLYRLQTGQTPIVKA 729

Query: 696  NTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD 755
            N Y  YG+D +P G NAIVAV++YTGYDM+DAMI+NKS+ +RG  +G +Y+TE +DLS  
Sbjct: 730  NLYDDYGMDNFPNGMNAIVAVISYTGYDMDDAMIINKSADERGFGYGTVYKTEKVDLSQS 789

Query: 756  GNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR 813
              + D   + F    D   ++    +D+DGLP +G  +  G+P  + YD T    +  + 
Sbjct: 790  RRRGDPITQHFGFGTDEWPEAWKEKLDADGLPLIGVKVEEGDPIVAYYDDTLGKTKVKTY 849

Query: 814  KGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDID 872
              SE  +++ V +   +S     Q+  I++R TR P+IGDKFSSRHGQKGVCS+ WP ID
Sbjct: 850  HSSEPGYIEEVKLLGDDSNEQEGQQITIKYRITRQPLIGDKFSSRHGQKGVCSRKWPQID 909

Query: 873  MPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGD 932
            MPF+  +GM+PD+IINPHAFPSRMTI M +ES+A K G+LHG   D+TP+          
Sbjct: 910  MPFT-ESGMQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPWK--------- 959

Query: 933  TGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDK 992
               +E  +  D  GE L   G+NYHG E +YSG  G EL C+I+IG VYYQRLRHMV+DK
Sbjct: 960  --FNEQDTPADYFGEQLLKAGYNYHGNEPMYSGATGEELRCDIYIGCVYYQRLRHMVNDK 1017

Query: 993  FQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADV 1052
            FQVRSTG ++ +T QP+KGRKR GGIR GEMERD+L+ HG ++LL DRL  CSDY    V
Sbjct: 1018 FQVRSTGPVNSLTMQPVKGRKRSGGIRVGEMERDALIGHGTSFLLQDRLLNCSDYTQTPV 1077

Query: 1053 CSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQT-------------SKGME 1099
            C  CGS+LT     P+  ++  I     A +  K   +A  +                  
Sbjct: 1078 CRSCGSILTTQTSVPRIGSMASIRCRRCAVSLDKYEGYAADSDIWEDGHGKKFVGGDDTT 1137

Query: 1100 TVAMPYVFRYLAAELAAMNIKI 1121
            TVA+P+V +YL +EL+AM IK+
Sbjct: 1138 TVAIPFVLKYLDSELSAMGIKM 1159


>gi|432901774|ref|XP_004076940.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like [Oryzias
            latipes]
          Length = 1135

 Score =  907 bits (2344), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/1101 (44%), Positives = 677/1101 (61%), Gaps = 82/1101 (7%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR  + SY GKL+AD+ +        ++++  + GQ P+M+K+R C+L G   ++LV   
Sbjct: 103  CRGRRCSYKGKLVADISWAINGVPKGIIKQ--SLGQVPIMVKSRLCNLHGMSPKELVKHH 160

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EEA EMGGYFI+NG+E+V R +I+P++NYP++M R  ++ R +GYT   V +RCV+ D +
Sbjct: 161  EEAEEMGGYFIVNGIEKVVRMLIMPRRNYPIAMSRPKWKSRGQGYTQYGVSMRCVKDDHT 220

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            ++ L L+YL NG+V L F  Q + + LP+G  LKALVD  D +I+  L         +E 
Sbjct: 221  AINLNLHYLENGTVMLNFIYQKELFFLPLGFALKALVDFTDFQIYQELI------KGRED 274

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
             +     VSE +++++ E      TTR + L ++GE F+  ++  +  +    A  ++ +
Sbjct: 275  NSFYKTCVSEMLRVVMEE----GCTTRSKVLTYLGERFRVKLNLPEWYTNEQCANILLNE 330

Query: 278  YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
             I +HL  + +KF LL  M +KLFS      + +NPDS+  QE+L PG L  ++LKE++ 
Sbjct: 331  CICIHLKSDTEKFYLLCLMSRKLFSHAKQECMEENPDSIMCQEVLTPGQLYLMFLKERMT 390

Query: 338  DWLRKGKKLIQDEIENNGKKF--DFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQT 395
             WL      ++   +  G K     ++  N+ K++  N    +    E +L TG L ++T
Sbjct: 391  AWLVS----VKLSFDKRGSKVFARGWSTENVIKML--NMGSDVTKPFEYLLATGNLNSKT 444

Query: 396  GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTP 455
            GL + Q +G  V A++LNF+R++S FR VHRGA+FA +RTTSVRKLLPESWGFLCPVHTP
Sbjct: 445  GLGMLQNSGLCVVADKLNFIRYLSHFRCVHRGAAFAKMRTTSVRKLLPESWGFLCPVHTP 504

Query: 456  DGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPA 515
            DGEPCGL+NHMT++C V +           S   TS+  +L  +G+ P     V   P  
Sbjct: 505  DGEPCGLMNHMTASCEVVAA----------SSPTTSLPALLCSLGVTP-----VDGTPAQ 549

Query: 516  VLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGA-YP 570
              S    V+LDG VVG + +     VV  +RR KV     +P   E+  VP +   + YP
Sbjct: 550  AFSDCYPVVLDGSVVGWVETDLAPAVVDAMRRFKVLRERKVPPWTEIVLVPKTGKASLYP 609

Query: 571  GLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHE 630
            GL+LFT+P + +RPV+N++L  +E      IG FEQ++  +    G       A   TH+
Sbjct: 610  GLFLFTTPCRMMRPVQNLALGKQE-----FIGTFEQLYTNV----GILEEEIEAGVTTHQ 660

Query: 631  EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQT 690
            E+ P  MLSVVAN  P+SDHNQSPRNMYQCQM KQTMGF + +   R+D KLY LQTPQ+
Sbjct: 661  ELFPHSMLSVVANFIPFSDHNQSPRNMYQCQMGKQTMGFPLHSFMDRSDNKLYRLQTPQS 720

Query: 691  PIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETI 750
             +VR   Y  Y +D YP+GTNAIVAV++YTGYDMEDAMI+NKSS +RG  HG IY+TE +
Sbjct: 721  ALVRPYMYDHYNLDNYPSGTNAIVAVISYTGYDMEDAMIVNKSSWERGFAHGSIYKTELV 780

Query: 751  DLSDDGNKVDRGQK--LFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSW 808
            DL+D   KV RG+   +F        ++  +D+DGLP VG ++  G+P+ S  +  T   
Sbjct: 781  DLAD---KV-RGEDAVVFGTKPGDPKVNDKLDADGLPRVGSVLQYGDPFYSYINLNTGQS 836

Query: 809  RTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQL 867
              +  K  E+  VD + +   +S +   ++  I  R  RNP IGDKF+SRHGQKG+ S+L
Sbjct: 837  CVHFYKSQEACVVDNIKICSNDSGSGQFKRICITTRVPRNPTIGDKFASRHGQKGILSRL 896

Query: 868  WPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVK 927
            WP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+A K  +LHG+  DATPF  S  
Sbjct: 897  WPAEDMPFTE-SGMTPDILFNPHGFPSRMTIGMLIESMAGKSAALHGRSHDATPFTFS-- 953

Query: 928  KTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRH 987
                     E  S +D  GE+LR  G+NY+G E LYSGV G EL  +IFIG VYYQRLRH
Sbjct: 954  ---------EENSALDHFGELLRAGGYNYYGTERLYSGVSGRELEADIFIGVVYYQRLRH 1004

Query: 988  MVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDY 1047
            MVSDKFQVR+TG  D++T QP+ GR   GGIRFGEMERD+LLAHG+++LLHDRL  CSD 
Sbjct: 1005 MVSDKFQVRTTGARDKVTNQPVGGRNIQGGIRFGEMERDALLAHGSSFLLHDRLFNCSDR 1064

Query: 1048 HVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP---KKVTCHACQTSKGMETVAMP 1104
              A +C  CGS+L+     P           PP  +    +K  C  C  S  +  V++P
Sbjct: 1065 SEAQMCVDCGSLLSPLLEKP-----------PPCWSAMRHRKTLCTLCGKSDSINAVSVP 1113

Query: 1105 YVFRYLAAELAAMNIKITLQL 1125
            YVFRY  AELAAMNIK+ L++
Sbjct: 1114 YVFRYFVAELAAMNIKVKLEV 1134


>gi|68471155|ref|XP_720354.1| hypothetical protein CaO19.7062 [Candida albicans SC5314]
 gi|77022490|ref|XP_888689.1| hypothetical protein CaO19_7062 [Candida albicans SC5314]
 gi|46442218|gb|EAL01509.1| hypothetical protein CaO19.7062 [Candida albicans SC5314]
 gi|76573502|dbj|BAE44586.1| hypothetical protein [Candida albicans]
          Length = 1166

 Score =  906 bits (2342), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/1102 (44%), Positives = 686/1102 (62%), Gaps = 66/1102 (5%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
             CR+  ++Y  +LM +V +   D     V E    GQ P+MLK+ RCHL+     +LV  
Sbjct: 107  ECRERMVTYRSRLMLNVTWSVNDEEE--VSEVREAGQIPIMLKSNRCHLEKLSPNQLVEA 164

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
            KEE+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R   YT   + IR VR DQ
Sbjct: 165  KEESDELGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFGNRGASYTKFGIQIRSVRPDQ 224

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
            +S T  L+YL +G+V   F  +  E+L+PV ++LKAL++TND EIF+ +     E     
Sbjct: 225  TSQTNVLHYLNDGNVTFRFSWRKNEFLVPVVMILKALIETNDREIFDGIVGNDTE----- 279

Query: 217  KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
                 +  +++R++++L   +  +L ++ + L ++G+ F+ V       S   V + V++
Sbjct: 280  -----NSFLTDRLELLLRTYKTYNLYSQQETLAYLGDKFRVVFGASPDMSDIEVGKEVLK 334

Query: 277  DYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
              + VHL +N DKF +L+FM++KL+SLV      DNPD+ Q+QE+LL G L  + +KEK+
Sbjct: 335  RIVLVHLPNNADKFRMLLFMIRKLYSLVAGDCAPDNPDATQHQEVLLGGFLYGMIIKEKI 394

Query: 337  EDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
            E++L+  K  IQ +I N G   +F +   + +V  +  ++ IG  ++  L TG L +Q+G
Sbjct: 395  EEYLQNIKLQIQSDI-NRGVGINFDDRKYMTRVFSR-INENIGQKLQYFLSTGNLVSQSG 452

Query: 397  LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
            LDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPVHTPD
Sbjct: 453  LDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAELKTTTVRKLLPESWGFLCPVHTPD 512

Query: 457  GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAV 516
            G PCGLLNH++  C++A+         D S++  ++ +  +GV     LP    +  P +
Sbjct: 513  GSPCGLLNHLSHKCKIAT------EASDVSQVPKALTQ--LGV-----LPADSFAAGPNL 559

Query: 517  LSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFT 576
              V LDG++VG     +   V   LR  KV+    +P DLE+GYVP S  G YPGLY+F 
Sbjct: 560  CCVQLDGKIVGWTTHEQGRIVADTLRYWKVNGGHGLPLDLEIGYVPPSNKGQYPGLYIFG 619

Query: 577  SPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEEIHPT 635
               + +RPV+ + L  E+     ++GPFEQV+M +   P+  +         +H E  PT
Sbjct: 620  GHSRMMRPVKYLPLDKED-----IVGPFEQVYMNVAVTPEEIENNIH-----SHVEFTPT 669

Query: 636  GMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRT 695
             +LS++ANLTP+SD NQSPRNMYQCQM KQTMG    AL  R+D KLY LQT QTPIV+ 
Sbjct: 670  NILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGTALVHRSDNKLYRLQTGQTPIVKA 729

Query: 696  NTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD 755
            N Y  YG+D +P G NAIVAV++YTGYDM+DAMI+NKS+ +RG  +G +Y+TE +DLS  
Sbjct: 730  NLYDDYGMDNFPNGMNAIVAVISYTGYDMDDAMIINKSADERGFGYGTVYKTEKVDLSQS 789

Query: 756  GNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR 813
              + D   + F    D   ++    +D+DGLP +G  +  G+P  + YD T    +  + 
Sbjct: 790  RRRGDPITQHFGFGSDEWPEAWKEKLDADGLPLIGVKVEEGDPIVAYYDDTLGKTKVKTY 849

Query: 814  KGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDID 872
              SE  +++ V +   +S     Q+  I++R TR P+IGDKFSSRHGQKGVCS+ WP ID
Sbjct: 850  HSSEPAYIEEVKLLGDDSNEQEGQQITIKYRITRQPLIGDKFSSRHGQKGVCSRKWPQID 909

Query: 873  MPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGD 932
            MPF+  +GM+PD+IINPHAFPSRMTI M +ES+A K G+LHG   D+TP+          
Sbjct: 910  MPFTE-SGMQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPWK--------- 959

Query: 933  TGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDK 992
               +E  +  D  GE L   G+NYHG E +YSG  G EL C+I+IG VYYQRLRHMV+DK
Sbjct: 960  --FNEQDTPADYFGEQLLKAGYNYHGNEPMYSGATGEELRCDIYIGCVYYQRLRHMVNDK 1017

Query: 993  FQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADV 1052
            FQVRSTG ++ +T QP+KGRKR GGIR GEMERD+L+ HG ++LL DRL  CSDY    V
Sbjct: 1018 FQVRSTGPVNSLTMQPVKGRKRSGGIRVGEMERDALIGHGTSFLLQDRLLNCSDYTQTPV 1077

Query: 1053 CSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQT-------------SKGME 1099
            C  CGS+LT     P+  ++  I     A    K   +A  +                  
Sbjct: 1078 CRSCGSILTTQTSVPRIGSMASIRCRRCAVGLDKYEGYAADSDIWEDGHGKKFVGGDDTT 1137

Query: 1100 TVAMPYVFRYLAAELAAMNIKI 1121
            TVA+P+V +YL +EL+AM IK+
Sbjct: 1138 TVAIPFVLKYLDSELSAMGIKM 1159


>gi|448083903|ref|XP_004195470.1| Piso0_004858 [Millerozyma farinosa CBS 7064]
 gi|359376892|emb|CCE85275.1| Piso0_004858 [Millerozyma farinosa CBS 7064]
          Length = 1167

 Score =  906 bits (2342), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/1117 (44%), Positives = 688/1117 (61%), Gaps = 95/1117 (8%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR+   +Y  +LM  V ++  D     V E    GQ P+MLK+ RCHL+   S +LV  +
Sbjct: 106  CRERMTTYRSRLMLKVTWKVNDEEE--VSEIREAGQVPIMLKSNRCHLEKLSSHELVEHR 163

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EE+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R   YT   V IRCVR DQ+
Sbjct: 164  EESDELGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFANRGAAYTKFGVQIRCVRPDQT 223

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            S T  L+YL +G+V   F  +  EYL+PV +VLKALV+TND EIF+ +            
Sbjct: 224  SQTNVLHYLNDGNVTFRFSWRKNEYLVPVMMVLKALVETNDREIFDGIV----------- 272

Query: 218  GA-VGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
            GA + +  +++R++++L   +  +L T+ + L ++G  F+         S   V E VIR
Sbjct: 273  GADISNSFLTDRLELLLKTFKQYNLCTKKETLAYLGNKFRVAFGSTPDVSDIEVGEEVIR 332

Query: 277  DYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
              + VHL +N DKF +L+FM++KL+SLV      DNPD+ Q+QEILL G L  + +KEK+
Sbjct: 333  RIVLVHLPNNEDKFRMLLFMIRKLYSLVAGDCCPDNPDATQHQEILLGGFLYGMIIKEKI 392

Query: 337  EDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
            E++L+  +  IQ +I N G   +F +   + +V  +  ++ IG  ++  L TG L +Q+G
Sbjct: 393  EEYLQSIRLQIQSDI-NRGIAVNFKDRKYMSRVFMR-INENIGQKLQYFLSTGNLVSQSG 450

Query: 397  LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
            LDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPVHTPD
Sbjct: 451  LDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAELKTTTVRKLLPESWGFLCPVHTPD 510

Query: 457  GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAV 516
            G PCGLLNH+   C+VA+     G + D SK+  ++    +GV      P    +  P++
Sbjct: 511  GSPCGLLNHLAHKCKVAT-----GAV-DVSKVPVALAE--LGVS-----PAHSYAAGPSL 557

Query: 517  LSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFT 576
              + LDGR++G     + + V   LR  KV     +P +LE+GYVP +  G YPGLYLF 
Sbjct: 558  CCIQLDGRIIGWCTHEQGKIVADTLRFWKVEGTHGVPLELEIGYVPPTHKGQYPGLYLFG 617

Query: 577  SPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEEIHPT 635
               + +RP R + L       ++++GPFEQV+++I   P+  +         +H E  PT
Sbjct: 618  GHSRMMRPTRYLPL-----DKVDIVGPFEQVYLDIAVTPEEIENNIH-----SHVEYAPT 667

Query: 636  GMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRT 695
             +LS++ANLTP+SD NQSPRNMYQCQMAKQTMG    AL  R+D KLY LQT QTPIV+ 
Sbjct: 668  NILSILANLTPFSDFNQSPRNMYQCQMAKQTMGTPGVALCHRSDNKLYRLQTGQTPIVKA 727

Query: 696  NTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD 755
            N Y  YG+D +P G NAIVAV++YTGYDM+DAMI+NKS+ +RG  +G +Y+ E IDLS  
Sbjct: 728  NLYDDYGMDNFPNGMNAIVAVISYTGYDMDDAMIINKSADERGFGYGTVYKVEKIDLSSS 787

Query: 756  GNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR 813
              + D   + F    D   +     +D+DGLP +G  +  G+P  + YD T    +  + 
Sbjct: 788  RRRGDPITQHFGFGTDEWPEGWKEKLDADGLPLIGTRVEEGDPIIAYYDDTLGRTKVKTY 847

Query: 814  KGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDID 872
              SE  +++ V +   +  +   Q+A I++R  R P+IGDKFSSRHGQKGVCS+ WP ID
Sbjct: 848  HSSEMAYIEEVKLLGDDGGDHECQQATIKYRVPRAPLIGDKFSSRHGQKGVCSRKWPQID 907

Query: 873  MPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGD 932
            MPFS  +GM+PD+IINPHAFPSRMTI M +ES+A K G+LHG   D+TP+          
Sbjct: 908  MPFSE-SGMQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPWQ--------- 957

Query: 933  TGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDK 992
               +ES +  D  GE L   G+NYHG E +YSGV G EL  +I+IG VYYQRLRHMV+DK
Sbjct: 958  --FNESDTPADFFGEQLLNAGYNYHGNEPMYSGVTGEELRADIYIGCVYYQRLRHMVNDK 1015

Query: 993  FQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADV 1052
            FQVRSTG ++ +T QP+KGRKR GGIR GEMERD+L+ HG+++LL DRL   SDY  + +
Sbjct: 1016 FQVRSTGPVNSLTMQPVKGRKRSGGIRVGEMERDALIGHGSSFLLQDRLLNSSDYTQSPM 1075

Query: 1053 CSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQ------TSKG--------- 1097
            C  CGS+L                 +P   +   V C  C       T KG         
Sbjct: 1076 CRSCGSLLNTQM------------SVPRVGSAASVRCRRCSKKLEYYTQKGQYVNDSDIW 1123

Query: 1098 -------------METVAMPYVFRYLAAELAAMNIKI 1121
                         + TVA+P+V +YL +ELAAMNIK+
Sbjct: 1124 EDGEGNKFVGGDDITTVAIPFVLKYLDSELAAMNIKM 1160


>gi|238883229|gb|EEQ46867.1| DNA-directed RNA polymerase I 135 kDa polypeptide [Candida albicans
            WO-1]
          Length = 1166

 Score =  906 bits (2342), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/1102 (44%), Positives = 686/1102 (62%), Gaps = 66/1102 (5%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
             CR+  ++Y  +LM +V +   D     V E    GQ P+MLK+ RCHL+     +LV  
Sbjct: 107  ECRERMVTYRSRLMLNVTWSVNDGEE--VSEVREAGQIPIMLKSNRCHLEKLSPNQLVEA 164

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
            KEE+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R   YT   + IR VR DQ
Sbjct: 165  KEESDELGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFGNRGASYTKFGIQIRSVRPDQ 224

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
            +S T  L+YL +G+V   F  +  E+L+PV ++LKAL++TND EIF+ +     E     
Sbjct: 225  TSQTNVLHYLNDGNVTFRFSWRKNEFLVPVVMILKALIETNDREIFDGIVGNDTE----- 279

Query: 217  KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
                 +  +++R++++L   +  +L ++ + L ++G+ F+ V       S   V + V++
Sbjct: 280  -----NSFLTDRLELLLRTYKTYNLYSQQETLAYLGDKFRVVFGASPDMSDIEVGKEVLK 334

Query: 277  DYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
              + VHL +N DKF +L+FM++KL+SLV      DNPD+ Q+QE+LL G L  + +KEK+
Sbjct: 335  RIVLVHLPNNADKFRMLLFMIRKLYSLVAGDCAPDNPDATQHQEVLLGGFLYGMIIKEKI 394

Query: 337  EDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
            E++L+  K  IQ +I N G   +F +   + +V  +  ++ IG  ++  L TG L +Q+G
Sbjct: 395  EEYLQNIKLQIQSDI-NRGVGINFDDRKYMTRVFSR-INENIGQKLQYFLSTGNLVSQSG 452

Query: 397  LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
            LDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPVHTPD
Sbjct: 453  LDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAELKTTTVRKLLPESWGFLCPVHTPD 512

Query: 457  GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAV 516
            G PCGLLNH++  C++A+         D S++  ++ +  +GV     LP    +  P +
Sbjct: 513  GSPCGLLNHLSHKCKIAT------EASDVSQVPKALTQ--LGV-----LPADSFAAGPNL 559

Query: 517  LSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFT 576
              V LDG++VG     +   V   LR  KV+    +P DLE+GYVP S  G YPGLY+F 
Sbjct: 560  CCVQLDGKIVGWTTHEQGRIVADTLRYWKVNGGHGLPLDLEIGYVPPSNKGQYPGLYIFG 619

Query: 577  SPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEEIHPT 635
               + +RPV+ + L  E+     ++GPFEQV+M +   P+  +         +H E  PT
Sbjct: 620  GHSRMMRPVKYLPLDKED-----IVGPFEQVYMNVAVTPEEIENNIH-----SHVEFTPT 669

Query: 636  GMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRT 695
             +LS++ANLTP+SD NQSPRNMYQCQM KQTMG    AL  R+D KLY LQT QTPIV+ 
Sbjct: 670  NILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGTALVHRSDNKLYRLQTGQTPIVKA 729

Query: 696  NTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD 755
            N Y  YG+D +P G NAIVAV++YTGYDM+DAMI+NKS+ +RG  +G +Y+TE +DLS  
Sbjct: 730  NLYDDYGMDNFPNGMNAIVAVISYTGYDMDDAMIINKSADERGFGYGTVYKTEKVDLSQS 789

Query: 756  GNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR 813
              + D   + F    D   ++    +D+DGLP +G  +  G+P  + YD T    +  + 
Sbjct: 790  RRRGDPITQHFGFGSDEWPEAWKEKLDADGLPLIGVKVEEGDPIVAYYDDTLGKTKVKTY 849

Query: 814  KGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDID 872
              SE  +++ V +   +S     Q+  I++R TR P+IGDKFSSRHGQKGVCS+ WP ID
Sbjct: 850  HSSEPAYIEEVKLLGDDSNEQEGQQITIKYRITRQPLIGDKFSSRHGQKGVCSRKWPQID 909

Query: 873  MPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGD 932
            MPF+  +GM+PD+IINPHAFPSRMTI M +ES+A K G+LHG   D+TP+          
Sbjct: 910  MPFT-ESGMQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPWK--------- 959

Query: 933  TGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDK 992
               +E  +  D  GE L   G+NYHG E +YSG  G EL C+I+IG VYYQRLRHMV+DK
Sbjct: 960  --FNEQDTPADYFGEQLLKAGYNYHGNEPMYSGATGEELRCDIYIGCVYYQRLRHMVNDK 1017

Query: 993  FQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADV 1052
            FQVRSTG ++ +T QP+KGRKR GGIR GEMERD+L+ HG ++LL DRL  CSDY    V
Sbjct: 1018 FQVRSTGPVNSLTMQPVKGRKRSGGIRVGEMERDALIGHGTSFLLQDRLLNCSDYTQTPV 1077

Query: 1053 CSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQT-------------SKGME 1099
            C  CGS+LT     P+  ++  I     A    K   +A  +                  
Sbjct: 1078 CRSCGSILTTQTSVPRIGSMASIRCRRCAVGLDKYEGYAADSDIWEDGHGKKFVGGDDTT 1137

Query: 1100 TVAMPYVFRYLAAELAAMNIKI 1121
            TVA+P+V +YL +EL+AM IK+
Sbjct: 1138 TVAIPFVLKYLDSELSAMGIKM 1159


>gi|448079309|ref|XP_004194369.1| Piso0_004858 [Millerozyma farinosa CBS 7064]
 gi|359375791|emb|CCE86373.1| Piso0_004858 [Millerozyma farinosa CBS 7064]
          Length = 1167

 Score =  905 bits (2339), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/1117 (44%), Positives = 688/1117 (61%), Gaps = 95/1117 (8%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR+   +Y  +LM  V ++  D     V E    GQ P+MLK+ RCHL+   S++LV  +
Sbjct: 106  CRERMTTYRSRLMLKVTWKVNDEEE--VSEIREAGQVPIMLKSNRCHLEKLTSEELVEHR 163

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EE+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R   YT   V IRCVR DQ+
Sbjct: 164  EESDELGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFANRGAAYTKFGVQIRCVRPDQT 223

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            S T  L+YL +G+V   F  +  EYL+PV +VLKALV+TND EIF+ +            
Sbjct: 224  SQTNVLHYLNDGNVTFRFSWRKNEYLVPVMMVLKALVETNDREIFDGIV----------- 272

Query: 218  GA-VGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
            GA + +  +++R++++L   +  +L T+ + L ++G  F+ V       S   V E VIR
Sbjct: 273  GADISNSFLTDRLELLLKTFKQYNLYTKKETLAYLGNKFRVVFGSTPDVSDIEVGEEVIR 332

Query: 277  DYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
              + VHL +N DKF +L+FM++KL+SLV      DNPD+ Q+QEILL G L  + +KEK+
Sbjct: 333  RIVLVHLPNNEDKFRMLLFMIRKLYSLVAGDCCPDNPDATQHQEILLGGFLYGMIIKEKI 392

Query: 337  EDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
            E++L+  +  IQ +I N G   +F +   + +V  +  ++ IG  ++  L TG L +Q+G
Sbjct: 393  EEYLQSIRLQIQSDI-NRGIAVNFKDRKYMSRVFMR-INENIGQKLQYFLSTGNLVSQSG 450

Query: 397  LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
            LDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPVHTPD
Sbjct: 451  LDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAELKTTTVRKLLPESWGFLCPVHTPD 510

Query: 457  GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAV 516
            G PCGLLNH+   C+VA+      +  D SK+  ++    +GV      P    +  P +
Sbjct: 511  GSPCGLLNHLAHKCKVAT------SAVDVSKVPAALAE--LGVS-----PAHSYAAGPGL 557

Query: 517  LSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFT 576
              + LDGR++G     + + V   LR  KV     +P +LE+GYVP +  G YPGLYLF 
Sbjct: 558  CCIQLDGRIIGWCTHEQGKIVADTLRFWKVEGTHGVPLELEIGYVPPTHKGQYPGLYLFG 617

Query: 577  SPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEEIHPT 635
               + +RP + + L       ++++GPFEQV++++   P+  +         +H E  PT
Sbjct: 618  GHSRMMRPTKYLPL-----DKVDIVGPFEQVYLDVAVTPEEIENNIH-----SHVEYAPT 667

Query: 636  GMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRT 695
             +LS++ANLTP+SD NQSPRNMYQCQMAKQTMG    AL  R+D KLY LQT QTPIV+ 
Sbjct: 668  NILSILANLTPFSDFNQSPRNMYQCQMAKQTMGTPGVALCHRSDNKLYRLQTGQTPIVKA 727

Query: 696  NTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD 755
            N Y  YG+D +P G NAIVAV++YTGYDM+DAMI+NKS+ +RG  +G +Y+ E IDLS  
Sbjct: 728  NLYDDYGMDNFPNGMNAIVAVISYTGYDMDDAMIINKSADERGFGYGTVYKVEKIDLSSS 787

Query: 756  GNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR 813
              + D   + F    D   +     +D+DGLP +G  +  G+P  + YD T    +  + 
Sbjct: 788  RRRGDPITQHFGFGTDEWPEGWKEKLDADGLPLIGTRVEEGDPIIAYYDDTLGRTKVKTY 847

Query: 814  KGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDID 872
              SE  +++ V +   +  +   Q+A I++R  R P+IGDKFSSRHGQKGVCS+ WP ID
Sbjct: 848  HSSEMAYIEEVKLLGDDGGDHECQQATIKYRVPRAPLIGDKFSSRHGQKGVCSRKWPQID 907

Query: 873  MPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGD 932
            MPFS  +GM+PD+IINPHAFPSRMTI M +ES+A K G+LHG   D+TP+          
Sbjct: 908  MPFSE-SGMQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPWK--------- 957

Query: 933  TGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDK 992
               +ES +  D  G+ L   G+NYHG E +YSGV G EL  +I+IG VYYQRLRHMV+DK
Sbjct: 958  --FNESDTPADFFGDQLLKAGYNYHGNEPMYSGVTGEELRADIYIGCVYYQRLRHMVNDK 1015

Query: 993  FQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADV 1052
            FQVRSTG ++ +T QP+KGRKR GGIR GEMERD+L+ HG+++LL DRL   SDY  + +
Sbjct: 1016 FQVRSTGPVNSLTMQPVKGRKRSGGIRVGEMERDALIGHGSSFLLQDRLLNSSDYTQSPI 1075

Query: 1053 CSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQ------TSKG--------- 1097
            C  CGS+L                 +P   +   V C  C       T KG         
Sbjct: 1076 CRSCGSLLNTQM------------SVPRVGSAASVRCRRCSKKLEYYTQKGQYVNDSDIW 1123

Query: 1098 -------------METVAMPYVFRYLAAELAAMNIKI 1121
                         + TVA+P+V +YL +ELAAMNIK+
Sbjct: 1124 EDGEGNKFVGGDDITTVAIPFVLKYLDSELAAMNIKM 1160


>gi|336374043|gb|EGO02381.1| hypothetical protein SERLA73DRAFT_86669 [Serpula lacrymans var.
            lacrymans S7.3]
 gi|336386962|gb|EGO28108.1| hypothetical protein SERLADRAFT_447311 [Serpula lacrymans var.
            lacrymans S7.9]
          Length = 1229

 Score =  905 bits (2339), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1147 (43%), Positives = 696/1147 (60%), Gaps = 107/1147 (9%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
             R+   SY G++ A V ++  +   P      + G  PVM+++ RC+L+   S +LV   
Sbjct: 130  ARERLTSYRGRMQAKVCWKLNNDTHPNQHVMRDCGLVPVMVRSVRCNLRSLSSAELVQHN 189

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EE  E GGYFI+NG ER+ R +ILP++N+ +S++R SF +R   YT  AV IRCVR DQS
Sbjct: 190  EEPEEFGGYFIINGNERLIRYLILPRRNHVISLIRPSFSNRGPSYTQYAVQIRCVRPDQS 249

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC-YDEKYKKE 216
            S T  L+YL NGS  L F  + +EY++P+ ++LKALV  +D EIF  +    YD  +   
Sbjct: 250  SATNSLHYLSNGSATLRFSWRKQEYVIPIMLILKALVGASDKEIFEGVMMQDYDNTF--- 306

Query: 217  KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
                    +++RV+++L   +  +L T  QCL+++G+ F+ V+   +  +  A+   +I+
Sbjct: 307  --------LTDRVELLLRSFKMYNLYTGDQCLEYLGDKFRVVLGMPEDWTNQALGVWLIQ 358

Query: 277  DYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
              I VHL    +KF +L+FML+KL+++V  +  SDNPDS Q+QE+LLPG L  + +KE+L
Sbjct: 359  KMILVHLETPREKFRMLLFMLRKLYAVVSSSCCSDNPDSPQHQEVLLPGSLYGMIIKERL 418

Query: 337  EDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
            E+ L + +  I  ++       DF +   I K++ +  +  IG  +   L TG L + +G
Sbjct: 419  EEALNQVRNQIATDVRRAEPPPDFLDKRYITKIINR-VNWDIGAKMSNFLATGNLTSPSG 477

Query: 397  LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
            LDLQQ +G+T+ AE+LN+ R+IS FR +HRGA FA L+TT+VRKLLPE+WGFLCPVHTPD
Sbjct: 478  LDLQQASGFTIVAEKLNWQRYISHFRCIHRGAFFAELKTTTVRKLLPEAWGFLCPVHTPD 537

Query: 457  GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS-ILRVLIGVGMIPSLPKLVKSGPPA 515
            G PCGLLNH++ TCR+ +           S +  + I  +L+G GM  +    +      
Sbjct: 538  GSPCGLLNHLSRTCRIVT-----------SPLAVAHIPALLVGHGMTRAFSSSIDG--RR 584

Query: 516  VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLF 575
             L V LDGRV+G    +   ++  HLR  K      +P DLE+GYVP S GG YPGL+LF
Sbjct: 585  NLCVQLDGRVIGWAKPAVARQLANHLRTWKTEGRHKVPLDLEIGYVPESKGGQYPGLFLF 644

Query: 576  TSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEEIHP 634
            +S  + +RPV+ ++   ++      IGPFEQV+M I   P+  + G      ++H E  P
Sbjct: 645  SSRARMMRPVKYLANGKDDQ-----IGPFEQVYMNIAVKPEEIEEG-----VSSHVEHAP 694

Query: 635  TGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVR 694
            T  LS++ANLTP+SD NQSPRN+YQCQM KQTMG    ALK R D KLY LQT Q+P+VR
Sbjct: 695  TNFLSILANLTPFSDFNQSPRNIYQCQMGKQTMGTPSTALKHRTDNKLYKLQTGQSPVVR 754

Query: 695  TNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD 754
               +  Y +D +P GTNAIVAV++YTGYDMEDAMILNKS+ +RG  +G +Y+++ +DL D
Sbjct: 755  PRLHNTYAMDSFPNGTNAIVAVISYTGYDMEDAMILNKSAHERGFGYGTVYKSQIVDLKD 814

Query: 755  --DGNKVDRGQKLFR------RNKDAKSLHSV---IDSDGLPYVGQMIHPGEPYCSIYDK 803
                +K      L        R ++    H+    +D DGLPY+G  +  G+P  +  D 
Sbjct: 815  MRGASKSTTAPTLHFGLGDDIRTEEGSRQHACCHFLDRDGLPYIGTKLDSGDPIAAYVDD 874

Query: 804  TTNSWRTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQKG 862
            TT   +    KG E   VD V +   ++ +   QK +I  R TR+P+IGDKFSSRHGQKG
Sbjct: 875  TTGRTKFVKYKGDEQALVDEVRLLGGDAGDTELQKLHITLRITRSPVIGDKFSSRHGQKG 934

Query: 863  VCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPF 922
            VCSQ WP +DMPF+  +GM+PD+IINPHAFPSRMTI ML+ES+A K G++HG   DATPF
Sbjct: 935  VCSQKWPAVDMPFT-ESGMQPDVIINPHAFPSRMTIGMLVESMAGKAGAMHGLAQDATPF 993

Query: 923  ANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYY 982
              S           E  + VD  GE L   G+NY+G E +YSG+ G E   +I+IG VYY
Sbjct: 994  QFS-----------EEDTAVDYFGEQLLAAGYNYYGNEPMYSGITGKEFAADIYIGVVYY 1042

Query: 983  QRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLH 1042
            QRLRHMV DKFQVR+TG +D +T QP+KGRKR GGIRFGEMERD+L+AHG ++LL DRL 
Sbjct: 1043 QRLRHMVLDKFQVRTTGPVDPVTHQPVKGRKRAGGIRFGEMERDALIAHGTSFLLQDRLM 1102

Query: 1043 TCSDYHVADVCSLCGSVLTATF--IHPQKRAIREIGGLPPARAPKKVTCHAC-------- 1092
             CSDY  A VC  CGS+++  +  I   + ++   GG+  +  P    C  C        
Sbjct: 1103 NCSDYSTAWVCRTCGSLISLGYDDISLGEMSVGSSGGI-RSTGPGGEYCRVCRATAEEEE 1161

Query: 1093 --------------------------------QTSKG--METVAMPYVFRYLAAELAAMN 1118
                                            +++KG  ++ VA+PYVFRYL AELA+M 
Sbjct: 1162 DRARQALATGQNPRHGTHSDITVAISSQNVLGRSTKGGDLDVVAVPYVFRYLCAELASMG 1221

Query: 1119 IKITLQL 1125
            I I+L++
Sbjct: 1222 IAISLEV 1228


>gi|348507169|ref|XP_003441129.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 2
            [Oreochromis niloticus]
          Length = 1078

 Score =  905 bits (2339), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/1130 (43%), Positives = 687/1130 (60%), Gaps = 89/1130 (7%)

Query: 5    KSADFEPLRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPV 64
            K      +++L + HIESFD  + +GL+ +              + ADV +        +
Sbjct: 28   KDTQHAAIQDLTKAHIESFDQAVIDGLNRV--------------VQADVSWSINGVPKGI 73

Query: 65   VRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQ 124
            +++  + G  P+M+K++ C+L G   ++LV   EEA EMGGYFI+NG+E+V R +I+P++
Sbjct: 74   IKQ--SLGHVPIMVKSKLCNLHGMSPKELVEHHEEAEEMGGYFIVNGIEKVIRMLIMPRR 131

Query: 125  NYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLL 184
            NYP++M R  +++R +GYT   + +RCVR++ +++ + L+YL NG+V L F  Q + + L
Sbjct: 132  NYPIAMSRPKWKNRGQGYTQYGISMRCVREEHTAINMNLHYLENGTVMLNFIYQKELFFL 191

Query: 185  PVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTR 244
            P+G  LKALVD  D +I+  L         +E  +     VSE ++I+  E    + TTR
Sbjct: 192  PLGFALKALVDFTDFQIYQELI------KGREDNSFYKTCVSEMLRIVTEE----NCTTR 241

Query: 245  LQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLV 304
             + L ++GE F+  ++  +  +    A  ++ + I +HL  + +KF LL  M +KLF+  
Sbjct: 242  SKVLNYLGERFRVKMNLPEWYTNEQCANFLLNECICIHLKSDVEKFYLLCLMTRKLFTFA 301

Query: 305  DHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLA 364
                + +NPDS+  QE+L PG L  ++LKE+L  WL      ++   +  G K      +
Sbjct: 302  KQECMEENPDSIVCQEVLTPGQLYLMFLKERLTAWLVS----VKLSFDKRGSKVTG-GWS 356

Query: 365  NIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAV 424
            +   +   N    +  S E +L TG L ++TGL + Q  G  V A++LNF+R++S FR V
Sbjct: 357  SEMMIKMLNMGTDLTRSFEYLLATGNLQSKTGLGMLQNTGLCVVADKLNFIRYLSHFRCV 416

Query: 425  HRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRD 484
            HRGA+FA +RTTSVRKLLPESWGFLCPVHTPDGEPCGL+NHMT++C + +          
Sbjct: 417  HRGAAFAKMRTTSVRKLLPESWGFLCPVHTPDGEPCGLMNHMTASCEIVA---------- 466

Query: 485  FSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAH 540
             +   TS+  +L  +G+ P     V   P    +    V+LDG VVG + +     VV  
Sbjct: 467  LTLSTTSLPGLLCSLGVTP-----VDGTPGRAFADCYPVVLDGAVVGWVEADLAPVVVES 521

Query: 541  LRRLKVSAASVIPDDLEVGYVPLSLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIE 599
            LRR KV     IP   E+  VP +   + YPGL+LFT+P + VRPV+N++   +E     
Sbjct: 522  LRRFKVLREKKIPPWTEIVLVPKTGKASLYPGLFLFTTPCRMVRPVQNLAFGKQE----- 576

Query: 600  LIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQ 659
            LIG FEQ+++ +   +     R      TH+E+ P  MLSVVAN  PYSDHNQSPRNMYQ
Sbjct: 577  LIGTFEQLYINVGILENEIEPRV----TTHQELFPHSMLSVVANFIPYSDHNQSPRNMYQ 632

Query: 660  CQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAY 719
            CQM KQTMGF + +   R+D KLY LQTPQ+P+VR   Y  YG+D YP+GTNAIVAV++Y
Sbjct: 633  CQMGKQTMGFPLHSFMDRSDNKLYRLQTPQSPLVRPYMYDHYGLDNYPSGTNAIVAVISY 692

Query: 720  TGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVI 779
            TGYDMEDAMI+NKSS +RG  HG IY+TE +DL++   K + G     +  D K +   +
Sbjct: 693  TGYDMEDAMIVNKSSWERGFAHGSIYKTELVDLAEK-VKGEDGVVFGTKPGDPK-VKEKL 750

Query: 780  DSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKN-SKNLPQKA 838
            D+DGLP++G ++  G+P+ S  +  T     +  K  E+  VD + V   +      ++ 
Sbjct: 751  DADGLPFIGSVLQYGDPFYSYINLNTGQTFISYYKSQEACIVDNIKVCSNDGGSGRFKRV 810

Query: 839  NIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTI 898
             I  R  RNP IGDKF+SRHGQKG+ S+LWP  DMPF+  +GM PD++ NPH FPSRMTI
Sbjct: 811  CITVRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTE-SGMTPDILFNPHGFPSRMTI 869

Query: 899  AMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHG 958
             ML+ES+A K G+LHG   DATPF  S           E  S +D  GE+LR  G+NY+G
Sbjct: 870  GMLIESMAGKSGALHGLGHDATPFTFS-----------EENSALDYFGELLRAGGYNYYG 918

Query: 959  VEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGI 1018
             E LYSG+ G EL  +IFIG VYYQRLRHMVSDKFQVR+TG  D++T QP+ GR   GGI
Sbjct: 919  TERLYSGLSGQELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPVGGRNVQGGI 978

Query: 1019 RFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGL 1078
            RFGEMERD+LLAHG+++LLHDRL  CSD  VA VC  CGS+L+     P           
Sbjct: 979  RFGEMERDALLAHGSSFLLHDRLFNCSDRSVAQVCVDCGSLLSPLLEKP----------- 1027

Query: 1079 PPARAP---KKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
            PP  +    +K  C  C  S  +++V++PYVFRY  AELAAMNIK+ L++
Sbjct: 1028 PPYWSSMRHRKTVCTLCGKSDSVDSVSVPYVFRYFVAELAAMNIKVKLEV 1077


>gi|350581974|ref|XP_003124849.3| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 1 [Sus
            scrofa]
          Length = 1135

 Score =  904 bits (2337), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/1165 (43%), Positives = 677/1165 (58%), Gaps = 116/1165 (9%)

Query: 12   LRELVRHHIESFDYMLDEGLSEMFD----------------------------------- 36
            L+EL R H+ESF+Y + EGLS                                       
Sbjct: 35   LQELTRAHVESFNYAVREGLSHAVQAIPPFEFTFKDERISLTIVDAAISPPTVPKGSICK 94

Query: 37   -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
                    CR  + +Y G+L AD+ +        V+++    G  P+M+K++ C+L    
Sbjct: 95   ELNIYPAECRGRRSTYRGRLTADISWAVNGISKGVIKQFL--GYVPIMVKSKLCNLYSLS 152

Query: 90   SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
             + L+   EEA EMGGYFI+NG+E+V R +I+P++N+P++MVR  ++ R  GYT   V +
Sbjct: 153  PRALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMVRPKWKSRGPGYTQYGVSM 212

Query: 150  RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
             CVR++ S+V + L+YL NG+V L F  + + + LP+G  LKALV  +D +IF  L    
Sbjct: 213  HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269

Query: 210  DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
                 KE  +     VS+ ++I++ E       T+ Q L ++GE F+  ++         
Sbjct: 270  ---KGKEDDSFLRNSVSQMLRIVMEE----GCATQKQVLNYLGERFRVKVNLPDWYPNEQ 322

Query: 270  VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
             AE +  + I +HL  N +KF +L  M +KLF+L     + +NPDSL NQE+L PG L  
Sbjct: 323  AAEFLFNECICIHLKSNTEKFYMLCLMTRKLFALAKGECMEENPDSLVNQEVLTPGQLFL 382

Query: 330  IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
            ++LKEKLE WL   K  I  + +         N  N+ K++  N    +    E +L TG
Sbjct: 383  MFLKEKLEAWLVSIKIAIDKKAQKTSVSL---NTENLMKIL--NLGIDLTKPFEYLLATG 437

Query: 390  RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
             L ++TGL   Q +G  V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGFL
Sbjct: 438  NLRSKTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFL 497

Query: 450  CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
            CPVHTPDGEPCGL+NH+T+TC V + +              SI  +L  +G+ P     V
Sbjct: 498  CPVHTPDGEPCGLMNHLTATCEVVTQF----------VYTASIPALLCSLGVTP-----V 542

Query: 510  KSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS- 564
             S P    S    VLLDG +VG         +   LR  KV     IP  +EV  +P++ 
Sbjct: 543  DSAPHRRYSECYPVLLDGVMVGWADKELAPSIADSLRHFKVLREKRIPPWMEVVLIPMTG 602

Query: 565  LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNA 624
                YPGLYLFT+P + VRPV+N+ L  EE     LIG  EQ+FM +   +        A
Sbjct: 603  KPSLYPGLYLFTTPCRLVRPVQNLGLGREE-----LIGTMEQIFMNVAIFED----EVLA 653

Query: 625  FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
               TH+E+ P  +LSV+AN  P+SDHNQSPRNMYQCQM KQTMGF +   K R+D KLY 
Sbjct: 654  GVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTFKDRSDNKLYR 713

Query: 685  LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI 744
            LQTPQ+P+VR   Y  Y +D YP GTNAIVAV++YTGYDMEDAMILNK+S +RG  HG +
Sbjct: 714  LQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMILNKASWERGFAHGSV 773

Query: 745  YQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT 804
            Y++E IDLS+   + D       R  D +     +D DGLP+VG  +  G+PY S  +  
Sbjct: 774  YKSEFIDLSEKIKQGDDSLVFGVRPGDPRVAQK-LDDDGLPFVGAQLQYGDPYYSYLNLN 832

Query: 805  TNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGV 863
            T        K  E+  VD + V   ++ +   K   I  R  RNP IGDKF+SRHGQKG+
Sbjct: 833  TGESFVVYYKSKENCIVDNIKVCGNDTGSGRFKCVCITMRVPRNPTIGDKFASRHGQKGI 892

Query: 864  CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFA 923
             S+LWP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+A K  +LHG   DATPF 
Sbjct: 893  LSRLWPVEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFI 951

Query: 924  NSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQ 983
             S           E  S ++  GEML+  G+NY+G E LYSG+ G EL  +IFIG VYYQ
Sbjct: 952  FS-----------EENSALEYFGEMLKAAGYNYYGTERLYSGISGLELEADIFIGVVYYQ 1000

Query: 984  RLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHT 1043
            RLRHMVSDKFQVR+TG  D++T QPI GR   GGIRFGEMERD+LLAHG ++LLHDRL  
Sbjct: 1001 RLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFN 1060

Query: 1044 CSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP---KKVTCHACQTSKGMET 1100
            CSD  VA VC  CGS+L+     P           PP+ +    +K +C  C  S  ++T
Sbjct: 1061 CSDRSVAHVCVKCGSLLSPLLEKP-----------PPSWSAMRNRKYSCSLCNRSDTIDT 1109

Query: 1101 VAMPYVFRYLAAELAAMNIKITLQL 1125
            V++PYVFRY  AELAAMNIK+ L +
Sbjct: 1110 VSVPYVFRYFVAELAAMNIKVKLDI 1134


>gi|334312104|ref|XP_003339712.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like isoform 2
            [Monodelphis domestica]
          Length = 1079

 Score =  904 bits (2336), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/1133 (43%), Positives = 672/1133 (59%), Gaps = 94/1133 (8%)

Query: 5    KSADFEPLRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPV 64
            K      L+EL R HIESF+Y + EGLS    H  QA IS++              G+P 
Sbjct: 28   KEQQLPALQELTRAHIESFNYAMREGLS----HAVQADISWSVN------------GNPK 71

Query: 65   VRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQ 124
               + + G  P+M+K+R C+L     + L+   EEA EMGGYFI+NG+E++ R +I+P++
Sbjct: 72   GIIKQSLGYIPIMVKSRLCNLYNLPPKSLIEHHEEAEEMGGYFIINGIEKIIRMLIMPRR 131

Query: 125  NYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLL 184
            N+P++M+R  ++ R  GYT   + + CVR + +++ + L+YL NGSV + F    + + L
Sbjct: 132  NFPIAMIRPKWKTRGPGYTHYGISMHCVRDEHTAINMNLHYLENGSVMVNFIYHKELFFL 191

Query: 185  PVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTR 244
            P+G VLKALV  +D +IF  L         +E+ +     VS+ +++++ E       T+
Sbjct: 192  PLGFVLKALVAFSDYQIFQELI------KGREENSFFRNCVSQMLRVVMEE----GCITQ 241

Query: 245  LQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLV 304
             Q L ++GE F+  +      +    AE ++   + +HL  N +KF +L  M +KLF+  
Sbjct: 242  KQVLNYLGERFRVKLSLPDWYTNVQAAEFLLNQCVCIHLKSNEEKFYVLCLMTRKLFTFA 301

Query: 305  DHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLA 364
                + +NPDSL NQE+L PG LI ++LKEK+E WL   K  +    +      +  NL 
Sbjct: 302  KEECMEENPDSLMNQEVLTPGRLILMFLKEKMEAWLVSVKIALDKRAQKTNVSMNTENLM 361

Query: 365  NIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAV 424
             I  +        +    E  L TG L ++TGL + Q +G  V A++LNF+R++S FR V
Sbjct: 362  KIFSM-----GLDLTRPFEYFLATGNLRSKTGLGMLQDSGLCVVADKLNFIRYLSHFRCV 416

Query: 425  HRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRD 484
            HRGA+FA +RTT+VRKLLPESWGFLCPVHTPDGEPCGL+NHMT+ C V +          
Sbjct: 417  HRGAAFAKMRTTTVRKLLPESWGFLCPVHTPDGEPCGLMNHMTAICEVVTQ--------- 467

Query: 485  FSKMRTSILRVLIGVGMIPSLPKLVKSGPPA-----VLSVLLDGRVVGVIPSSEIEKVVA 539
             +   +SI  +L  +G+ P        G P+        V+L+G +VG +       +  
Sbjct: 468  -AVYTSSIAPLLCSLGVTPF------DGTPSQPYSECYPVMLNGIMVGWVEKDLAPAITD 520

Query: 540  HLRRLKVSAASVIPDDLEVGYVPLS-LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNI 598
             LR  KV     IP   E+  +P +     YPGL+LFT+P + +RPV+N+ L  EE    
Sbjct: 521  SLRNFKVLGKKQIPPWTEIVLIPKTGKPSLYPGLFLFTTPCRMIRPVQNLELGKEE---- 576

Query: 599  ELIGPFEQVFMEIRCPDGGDGGRRNAFPA--THEEIHPTGMLSVVANLTPYSDHNQSPRN 656
             LIG  EQ+FM I   +          P   TH+E+ P  +LSVVAN  P+SDHNQSPRN
Sbjct: 577  -LIGTLEQIFMNIAIFEN------EIVPGITTHQELFPHSLLSVVANFIPFSDHNQSPRN 629

Query: 657  MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
            MYQCQM KQTMGF +   + R+D KLY LQTPQ+P+VR   Y  Y +D YP GTNAIVAV
Sbjct: 630  MYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAV 689

Query: 717  LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLH 776
            ++YTGYDMEDAMI+NK+S +RG  HG +Y+TE IDLS+   + D       +  D + L 
Sbjct: 690  ISYTGYDMEDAMIVNKASWERGFAHGSVYKTELIDLSEKIKQGDDSLVFGVKPGDLRVLQ 749

Query: 777  SVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQ 836
              +DSDGLP++G ++  G+P+ S  +  T        K  E+  VD + V   +S N   
Sbjct: 750  K-LDSDGLPHIGSLLKYGDPFYSYLNINTGESFVTYYKNKENCLVDNIKVCSNDSGNGKF 808

Query: 837  KA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSR 895
            K+  I  R  RNP IGDKF+SRHGQKG+ S+LWP  DMPF+  +GM PD++ NPH FPSR
Sbjct: 809  KSICITMRIPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTE-SGMVPDILFNPHGFPSR 867

Query: 896  MTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFN 955
            MTI ML+ES+A K  +LHG   DATPF  S           E  S +   GEML+  G+N
Sbjct: 868  MTIGMLIESMAGKSAALHGLCHDATPFTFS-----------EENSALGYFGEMLKAAGYN 916

Query: 956  YHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRG 1015
            ++G E LYSG+ G EL  +IFIG VYYQRLRHMVSDKFQVR+TG  D++T QPI GR   
Sbjct: 917  FYGTERLYSGISGVELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQ 976

Query: 1016 GGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREI 1075
            GGIRFGEMERD+LLAHG ++LLHDRL  CSD  VA VC  CGS+L+     P        
Sbjct: 977  GGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKP-------- 1028

Query: 1076 GGLPPARAP---KKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
               PP+ +    +K  C  C  S  ++TV++PYVFRY  AELAAMNIK+ L +
Sbjct: 1029 ---PPSWSAMRNRKYNCTVCNQSDTIDTVSVPYVFRYFVAELAAMNIKVKLDV 1078


>gi|150865654|ref|XP_001384965.2| DNA-directed RNA polymerase I [Scheffersomyces stipitis CBS 6054]
 gi|149386910|gb|ABN66936.2| DNA-directed RNA polymerase I [Scheffersomyces stipitis CBS 6054]
          Length = 1167

 Score =  904 bits (2336), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/1120 (43%), Positives = 681/1120 (60%), Gaps = 99/1120 (8%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
             CR+   +Y  +LM  V +   D     V E    GQ P+MLKT RCHL+    Q+LV  
Sbjct: 105  ECRERMSTYRSRLMLKVAWSVNDGDE--VSEIREAGQVPIMLKTNRCHLEKLSPQELVEQ 162

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
            +EE+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R   YT   + IR VR DQ
Sbjct: 163  REESDELGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFGNRGAAYTKFGIQIRSVRPDQ 222

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
            +S T  L+YL +G+V   F  +  EYL+PV ++LKAL++TND EIF+             
Sbjct: 223  TSQTNVLHYLNDGNVTFRFSWRKNEYLVPVMMILKALIETNDREIFD------------- 269

Query: 217  KGAVGS----PLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAE 272
             G VG+      +++R++++L   +  +L ++ + L ++G+ F+ V       S   V +
Sbjct: 270  -GIVGADSANSFLTDRLELLLRTYKQYNLYSKQETLAYLGDKFRVVFGATPDVSDIEVGK 328

Query: 273  TVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYL 332
             V+R  + VHL DN DKF +L+FM++KL+SLV      DNPD+ Q+QE+LL G L  + +
Sbjct: 329  EVLRRIVLVHLPDNADKFRMLLFMIRKLYSLVAGDCSPDNPDATQHQEVLLGGFLYGMII 388

Query: 333  KEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLA 392
            KEK+E++L+     IQ +I N G   +F +   + +V  +  ++ IG  ++  L TG L 
Sbjct: 389  KEKIEEYLQNINLQIQSDI-NRGVAINFNDRKYMSRVFMR-INENIGQKLQYFLSTGNLV 446

Query: 393  TQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPV 452
            +Q+GLDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPV
Sbjct: 447  SQSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAELKTTTVRKLLPESWGFLCPV 506

Query: 453  HTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSG 512
            HTPDG PCGLLNH+   CR+A+         D S++  ++ +  +GV      P    + 
Sbjct: 507  HTPDGSPCGLLNHLAHKCRIAT------EASDVSQVPKTLAQ--LGVS-----PAHTFAA 553

Query: 513  PPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGL 572
             P +  V LDG++VG     + + V   LR  KV     +P DLE+GYVP S  G YPGL
Sbjct: 554  GPNLCCVQLDGKIVGWTTHEQGKIVADTLRFWKVEGGHGLPLDLEIGYVPPSAKGQYPGL 613

Query: 573  YLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEI 632
            Y+F    + +RP + + L   +     ++GPFEQV+M +        G  +    TH E 
Sbjct: 614  YIFGGHSRMMRPAKYLPLDKPD-----VLGPFEQVYMNVAVTPAEIEGNVH----THVEF 664

Query: 633  HPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPI 692
             PT +LS++ANLTP+SD NQSPRNMYQCQM KQTMG    AL  R+D KLY LQT QTPI
Sbjct: 665  SPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALMHRSDNKLYRLQTGQTPI 724

Query: 693  VRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDL 752
            V+ N Y  YG+D +P G NA+VAV++YTGYDM+DAMI+NKS+ +RG  +G +Y+ E +DL
Sbjct: 725  VKANLYDDYGMDNFPNGMNAVVAVISYTGYDMDDAMIINKSADERGFGYGTVYKVEKVDL 784

Query: 753  SDDGNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRT 810
            S    + D   + F    D   ++    +D+DGLP +G  +  G+P  + +D+T+   + 
Sbjct: 785  SQSRRRGDPITQHFGFGDDEWPETWREKLDADGLPLIGVKVEEGDPIVAFFDETSGKTKV 844

Query: 811  NSRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWP 869
             +   SE  +++ V +   +S +   Q+  I++R TR P IGDKFSSRHGQKGVCS+ WP
Sbjct: 845  KTYHSSEPAYIEEVKLLGDDSGDQEGQQITIKYRITRQPNIGDKFSSRHGQKGVCSRKWP 904

Query: 870  DIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKT 929
             IDMPFS  TG++PD+IINPHAFPSRMTI M +ES+A K G+LHG   D+TP+  S    
Sbjct: 905  QIDMPFS-ETGIQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPWKFS---- 959

Query: 930  NGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMV 989
                   E  +  D  GE LR+ G+NYHG E +YSG  G EL  +I+IG VYYQRLRHMV
Sbjct: 960  -------EDDTPADYFGEQLRSAGYNYHGNEPMYSGATGEELRADIYIGCVYYQRLRHMV 1012

Query: 990  SDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHV 1049
            +DKFQVRSTG ++ +T QP+KGRKR GGIR GEMERD+L+ HG A++L DRL  CSDY  
Sbjct: 1013 NDKFQVRSTGPVNSLTMQPVKGRKRSGGIRVGEMERDALIGHGTAFMLQDRLLNCSDYTQ 1072

Query: 1050 ADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQT--------------- 1094
              +C  CGS+LT     P+      IG L   R      C  C T               
Sbjct: 1073 TSLCRSCGSILTTQTTVPR------IGSLATIR------CRRCSTKLDSYVQKFGYANDS 1120

Query: 1095 -------------SKGMETVAMPYVFRYLAAELAAMNIKI 1121
                              TVA+P+V +YL +EL+AM IK+
Sbjct: 1121 DIWEDGQGKKFVGGDDTTTVAIPFVLKYLDSELSAMGIKM 1160


>gi|426223599|ref|XP_004005962.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 2 [Ovis
            aries]
          Length = 1079

 Score =  904 bits (2336), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/1123 (44%), Positives = 672/1123 (59%), Gaps = 88/1123 (7%)

Query: 12   LRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNF 71
            L+EL R H+ESF+Y + EGLS    H  QA IS++           ++  S  V ++F  
Sbjct: 35   LQELTRAHVESFNYAVSEGLS----HAVQADISWS-----------VNGISKGVIKQF-L 78

Query: 72   GQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMV 131
            G  P+M+K++ C+L     + L+   EEA EMGGYFI+NG+E+V R +I+P++N+P++MV
Sbjct: 79   GYVPIMVKSKLCNLYSLPPKALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMV 138

Query: 132  RSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLK 191
            R  ++ R  GYT   V + CVR++ S+V + L+YL NG+V L F  + + + LP+G  LK
Sbjct: 139  RPKWKSRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALK 198

Query: 192  ALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHI 251
            ALV  +D +IF  L         KE  +     VS+ ++I++ E      +T+ Q L ++
Sbjct: 199  ALVSFSDYQIFQELI------KGKEDDSFFRNSVSQMLRIVMEE----GCSTQKQVLNYL 248

Query: 252  GEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSD 311
            GE F+  ++          AE +    I +HL  N +KF +L  M +KLF+L     + +
Sbjct: 249  GERFRVKLNLPDWYPNEQAAEFLFNQCICIHLKSNTEKFYVLCLMTRKLFALAKGECMEE 308

Query: 312  NPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVME 371
            NPDSL NQE+L PG L  ++LKEKLE WL   K  I  + +      +  NL  I  +  
Sbjct: 309  NPDSLMNQEVLTPGQLFLMFLKEKLEAWLVSIKIAIDKKSQKTNVSLNSENLMKIFSL-- 366

Query: 372  KNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFA 431
                  +    E +L TG L ++TGL   Q +G  V A++LNF+R++S FR VHRGA FA
Sbjct: 367  ---GIDLTKPFEYLLATGNLRSKTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFA 423

Query: 432  GLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS 491
             +RTT+VR+LLPESWGFLCPVHTPDGEPCGL+NH+T+ C V +           S    S
Sbjct: 424  KMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAICEVVTQ----------SVYTAS 473

Query: 492  ILRVLIGVGMIPSLPKLVKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVS 547
            I  +L  +G+ P     V   P    S    VLLDG ++G         +   LR  KV 
Sbjct: 474  IPALLCSLGVTP-----VDGTPHRPYSECYPVLLDGVMIGWADKEIAPGIADSLRHFKVL 528

Query: 548  AASVIPDDLEVGYVPLS-LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQ 606
                IP  +EV  +P++     YPGLYLFT+P + VRPV+N+ L  EE     LIG  EQ
Sbjct: 529  REKRIPPWMEVVLIPMTGKPSLYPGLYLFTTPCRLVRPVQNLELGKEE-----LIGTMEQ 583

Query: 607  VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQT 666
            +FM +   +        A   TH+E+ P  MLSV+AN  P+SDHNQSPRNMYQCQM KQT
Sbjct: 584  IFMNVAIFED----EVLAGVTTHQELFPHSMLSVIANFIPFSDHNQSPRNMYQCQMGKQT 639

Query: 667  MGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMED 726
            MGF +   + R+D KLY LQTPQ+P+VR   Y  Y +D YP GTNAIVAV++YTGYDMED
Sbjct: 640  MGFPLLTFQDRSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMED 699

Query: 727  AMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPY 786
            AMI+NK+S +RG  HG +Y++E IDLS+   + D       +  D + +   +D DGLP+
Sbjct: 700  AMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDDSLVFGVKAGDPRVMQK-LDDDGLPF 758

Query: 787  VGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHT 845
            +G  +  G+PY S  +  T        K  E+  VD + V   ++ N   K   I  R  
Sbjct: 759  IGAQLKYGDPYYSYLNLNTGEGFVMYYKSKENCIVDNIKVCSNDTGNGKFKCVCITMRVP 818

Query: 846  RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
            RNP IGDKF+SRHGQKG+ S+LWP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+
Sbjct: 819  RNPTIGDKFASRHGQKGILSRLWPVEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESM 877

Query: 906  AAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSG 965
            A K  +LHG   DATPF  S           E  S ++  GEML+  G+NY+G E LYSG
Sbjct: 878  AGKSAALHGLCHDATPFIFS-----------EENSALEYFGEMLKAAGYNYYGTERLYSG 926

Query: 966  VYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMER 1025
            + G EL  +IFIG VYYQRLRHMVSDKFQVR+TG  D++T QPI GR   GGIRFGEMER
Sbjct: 927  ISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFGEMER 986

Query: 1026 DSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP- 1084
            D+LLAHG ++LLHDRL  CSD  VA VC  CGS+L+     P           PP+ +  
Sbjct: 987  DALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKP-----------PPSWSAL 1035

Query: 1085 --KKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
              +K +C  C  S  ++T+++PYVFRY  AELAAMNIK+ L +
Sbjct: 1036 RNRKYSCALCNRSDTIDTISVPYVFRYFVAELAAMNIKVKLDI 1078


>gi|426192462|gb|EKV42398.1| hypothetical protein AGABI2DRAFT_188567 [Agaricus bisporus var.
            bisporus H97]
          Length = 1219

 Score =  904 bits (2336), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1147 (43%), Positives = 697/1147 (60%), Gaps = 109/1147 (9%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
              R+   SY G++   ++  + DA         + G  P+M+++ RC+L+G  S  LV+ 
Sbjct: 123  EARERLTSYRGRMT--LKICWTDAHGQKNETIKDCGLLPIMVRSVRCNLKGLSSAALVAK 180

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
             EE  E GGYFI+NG ER+ R +ILP++N+ +S++R SF +R   YT  AV IRCVR DQ
Sbjct: 181  HEEPEEFGGYFIINGNERLIRYLILPRRNHVISLIRPSFANRGLSYTQYAVQIRCVRPDQ 240

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
            +S T  L+YL NGS  L F  + +EY++P+ ++LKA+V  +D EIF  +       Y+  
Sbjct: 241  TSATNTLHYLSNGSAMLRFSWRKQEYVIPIMLILKAMVGASDKEIFEGVIM---RDYENT 297

Query: 217  KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
                    +++RV+++L   +  +L T  QCL ++G+ F+ V++  +  +  A+ + +++
Sbjct: 298  -------FLTDRVELLLRSFKVFTLNTGEQCLDYLGDKFRVVLNLPEDWTNTAIGKWLVQ 350

Query: 277  DYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
              I VHL+   DKF +L+FML+KLF+LV  +  +DNPDS Q+QE+LLPG L  + +KE++
Sbjct: 351  KMILVHLDSPRDKFRMLLFMLRKLFALVSSSCCADNPDSPQHQEVLLPGTLYGMIIKERM 410

Query: 337  EDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
            E+ L      +  ++ N G   DF +     KV  K  +  IG  +   L TG L + TG
Sbjct: 411  EEILNNICNTVMLDVRN-GATVDFHDKRYFTKVTSK-VNFDIGARLANFLATGNLISPTG 468

Query: 397  LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
            LDLQQ +G+T+ AE+LN+ R+IS FR +HRGA FA L+TT+VRKLLPE+WGFLCPVHTPD
Sbjct: 469  LDLQQASGFTIVAEKLNWQRYISHFRCIHRGAFFAELKTTTVRKLLPEAWGFLCPVHTPD 528

Query: 457  GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIG-VGMIPSLPKLVKSGPPA 515
            G PCGLLNH++ TCR+ +           S +  + L  L+G  GM       +      
Sbjct: 529  GSPCGLLNHLSRTCRIVT-----------SPLAVAHLPSLLGSCGMTQVFTPSING--QK 575

Query: 516  VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLF 575
             +SV LDGR++G    S   ++  +LR  K    + +P DLE+G+VP S GG YPGL+LF
Sbjct: 576  NISVQLDGRIIGWAQPSVASQLAKNLRVWKTEGKNGVPLDLEIGFVPESDGGQYPGLFLF 635

Query: 576  TSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEEIHP 634
             +  + +RPV+   LP+ +   I   G FEQV+M + C P+  D        +TH E +P
Sbjct: 636  ANRSRMMRPVK--YLPNGKDDQI---GSFEQVYMNVACLPEEIDAN------STHVEHNP 684

Query: 635  TGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVR 694
            T  LS++ANLTP+SD NQSPRN+YQCQM KQ+MG    ALK R D KLY LQT Q+P+VR
Sbjct: 685  TNFLSILANLTPFSDFNQSPRNIYQCQMGKQSMGTPSTALKHRTDNKLYRLQTGQSPVVR 744

Query: 695  TNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD 754
               +  Y +D YP GTNAIVAV++YTGYDMEDAMILNKS+ +RG  +G +Y+++ +DL D
Sbjct: 745  PMLHNTYAMDSYPNGTNAIVAVISYTGYDMEDAMILNKSAHERGFAYGTVYKSQIVDLKD 804

Query: 755  --DGNKVDRGQKLF------RRNKDAKSLHSV--IDSDGLPYVGQMIHPGEPYCSIYDKT 804
                NK      L        R +  ++ H V  +D DGLPY+G  +  G+P  +  D+T
Sbjct: 805  MRGANKSVTAPSLHFGLGPDVRLEGDRAHHCVDFLDLDGLPYIGTRLKAGDPIAAYIDET 864

Query: 805  TNSWRTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQKGV 863
                +    KG E  +VD V +   +S +   QK ++  R TR+P+IGDKFSSRHGQKGV
Sbjct: 865  AGRTKFVKYKGDEMAYVDEVRLLASDSGDTELQKMHVTLRITRSPVIGDKFSSRHGQKGV 924

Query: 864  CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFA 923
            CSQ WP +DMPF+  +GM+PD+IINPHAFPSRMTI ML+ES+A K G++HG   DATPF 
Sbjct: 925  CSQKWPAVDMPFTE-SGMQPDVIINPHAFPSRMTIGMLVESMAGKAGAMHGLAQDATPFK 983

Query: 924  NSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQ 983
             S K T            +D  G+ L   G+NY+G E +YSG+ G E   +I+IG VYYQ
Sbjct: 984  FSEKDT-----------AIDYFGKQLSAAGYNYYGNEPMYSGITGQEFAADIYIGVVYYQ 1032

Query: 984  RLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHT 1043
            RLRHMV DKFQVR+TG +D ITRQP+KGRKR GGIRFGEMERD+L+AHGA++LL DRL  
Sbjct: 1033 RLRHMVLDKFQVRTTGPVDPITRQPVKGRKRAGGIRFGEMERDALIAHGASFLLQDRLMN 1092

Query: 1044 CSDYHVADVCSLCGSVLTATF--IHPQKRAIREIGGLPPARAPKKVTCHACQ-------- 1093
            CSDY  A VC  CGS+++  +  I   + ++   G + P   P    C  C+        
Sbjct: 1093 CSDYSTAWVCRTCGSLISLGYEDISLGEVSLGTSGSIKPT-GPSGEYCRVCRAAAEEEEE 1151

Query: 1094 ---------------------------------TSKG--METVAMPYVFRYLAAELAAMN 1118
                                             ++KG  ++ VA+PYVFRYL AELA+M 
Sbjct: 1152 HERQALNTNQQSQRPPQNSVQVAISSQNVLGRASNKGGDLDVVAVPYVFRYLCAELASMG 1211

Query: 1119 IKITLQL 1125
            I ++L++
Sbjct: 1212 IAVSLEV 1218


>gi|390601556|gb|EIN10950.1| DNA-directed RNA polymerase I polypeptide 2 [Punctularia
            strigosozonata HHB-11173 SS5]
          Length = 1227

 Score =  903 bits (2334), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/1150 (43%), Positives = 696/1150 (60%), Gaps = 113/1150 (9%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
             R+   SY G++   + F   D  +PV   + + G  P+M+++ RC+L+   S +LV+  
Sbjct: 128  ARERLTSYRGRMYIKLNFTLND--NPVRTIQKDCGLLPIMVRSVRCNLRSMSSAELVARH 185

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EE  E GGYFI+NG ER+ R +ILP++N+ +S+ R S+ +R   YT  AV IRCVR DQ+
Sbjct: 186  EEPEEFGGYFIINGNERLIRLLILPRRNHAISLFRPSWANRGPSYTPYAVQIRCVRPDQT 245

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            + T  L+YL NG+  L F  +  EY++PV ++LKALV  +D EIF  L  C  E      
Sbjct: 246  AATNTLHYLQNGNAVLRFTWRKNEYVIPVMLILKALVGASDKEIFEGLAMCDYE------ 299

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
                +  +++R++++L   +  SL T  QCL+++G+ F+ V+   +  +   + + +++ 
Sbjct: 300  ----NTFLTDRIEMLLRGFKTYSLYTGTQCLEYLGDKFRVVLGCPEDWTNSEIGDWLLKK 355

Query: 278  YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
             +  HL D  DK+ +LIFML+KL+SLV  +   DNPDS Q+QE+LLPGHL  + +KE+LE
Sbjct: 356  MVLAHLQDPRDKYRMLIFMLRKLYSLVSGSCAPDNPDSPQHQEVLLPGHLYGMIIKERLE 415

Query: 338  DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
            + L + +  I  ++       DF +   I KV+ +  +  IG  +   L TG L + TGL
Sbjct: 416  EVLAQIRSQIYADVRREDPSIDFTDDRYINKVLSR-VNFDIGAKMSNFLATGNLISPTGL 474

Query: 398  DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDG 457
            DLQQ +G+T+ AE+LN+ R+IS FR++HRGA FA L+TT+VRKLLPE+WGFLCPVHTPDG
Sbjct: 475  DLQQTSGFTIVAEKLNWQRYISHFRSIHRGAFFAELKTTTVRKLLPEAWGFLCPVHTPDG 534

Query: 458  EPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGV-GMI-PSLPKLVKSGPPA 515
             PCGLLNH++ TCR+ +           + +  + L  L+   GM  P  P L   G  A
Sbjct: 535  TPCGLLNHLSRTCRIVT-----------TPLPVAHLPALLAEHGMSHPFAPSLDGRGH-A 582

Query: 516  VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLF 575
             L V LDGRV+G    +   ++   LR  K      +P DLEVGYVP+S GG YPGLYLF
Sbjct: 583  NLCVQLDGRVIGWARPAVALQLAERLRIWKTEGLHNVPLDLEVGYVPISEGGQYPGLYLF 642

Query: 576  TSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEEIHP 634
            ++  + +RPVR ++     +   ++IG FEQV+M+I   P+  + G      ++H E  P
Sbjct: 643  STRARMMRPVRYLA-----NGRDDMIGSFEQVYMDIAIKPEEIELGV-----SSHVEHAP 692

Query: 635  TGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVR 694
            T  LS++ANLTP+SD NQSPRN+YQCQM KQTMG    A++ R D KLY LQ+ Q+P+VR
Sbjct: 693  TNFLSILANLTPFSDFNQSPRNIYQCQMGKQTMGTPSTAIRHRTDNKLYRLQSGQSPVVR 752

Query: 695  TNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD 754
               +  YG+D +P GTNA+VAV++YTGYDMEDAMILNKS+ +RG  +G IY+++T+DL +
Sbjct: 753  PKLHNTYGMDSFPNGTNAVVAVISYTGYDMEDAMILNKSAHERGFAYGTIYKSQTVDLQE 812

Query: 755  D-GNKVDRGQKLFR--------RNKDAKSLHSV--IDSDGLPYVGQMIHPGEPYCSIYDK 803
              G    R                   K  H V  +D DGLP +G  +  G+P  +  D 
Sbjct: 813  QHGASKSRTSPTLHFGIGDDVIVEAGTKQHHCVEFLDMDGLPRIGTRLSTGDPIAAYIDD 872

Query: 804  TTNSWRTNSRKGSESVFVDYVAV--DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQK 861
            TT+  R    KG E  +VD V +  D      L QK +I  R  R P+IGDKFSSRHGQK
Sbjct: 873  TTHRTRFVKYKGDEVAYVDEVRLLGDDAGDSEL-QKIHITLRIARAPVIGDKFSSRHGQK 931

Query: 862  GVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATP 921
            GVCSQ WP IDMPFS  +GM+PD+IINPHAFPSRMTI ML+ES+A K G++HG   DATP
Sbjct: 932  GVCSQKWPAIDMPFSE-SGMQPDVIINPHAFPSRMTIGMLVESMAGKAGAMHGLAQDATP 990

Query: 922  FANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVY 981
            F  S           E  + VD  G+ L   G+NY+G E +YSG+ G E   +I++G VY
Sbjct: 991  FQFS-----------EEDTAVDYFGKQLLAAGYNYYGNEPMYSGITGQEFAADIYLGVVY 1039

Query: 982  YQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRL 1041
            YQRLRHMV+DKFQVR+TG +D +TRQP+KGRKR GGIRFGEMERD+L+AHG ++LL DRL
Sbjct: 1040 YQRLRHMVNDKFQVRTTGPVDPVTRQPVKGRKRAGGIRFGEMERDALIAHGTSFLLQDRL 1099

Query: 1042 HTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPA----RAPKKVTCHAC----- 1092
              CSDY  A VC  CGS+++  +   +  ++ E+     A    R P    C  C     
Sbjct: 1100 MNCSDYSTAWVCRTCGSLISLGY---EDVSLGEVMMGSSATIRPRGPGGEYCRVCRAAAE 1156

Query: 1093 -----------------------------------QTSKG--METVAMPYVFRYLAAELA 1115
                                               + +KG  ++ VA+PYVFRYL AELA
Sbjct: 1157 EEDERARKALADGANGRQHARTDLRVSISSHHVLNKAAKGGDLDVVAVPYVFRYLCAELA 1216

Query: 1116 AMNIKITLQL 1125
            +M I I+L++
Sbjct: 1217 SMGIAISLEV 1226


>gi|430813529|emb|CCJ29126.1| unnamed protein product [Pneumocystis jirovecii]
          Length = 1198

 Score =  903 bits (2334), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/1110 (43%), Positives = 689/1110 (62%), Gaps = 85/1110 (7%)

Query: 44   SYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEM 103
            +Y  +L+  V +     G   + +   FGQ P+M+K+ RCH++      L+  +EE+ E+
Sbjct: 115  TYKARLLLKVAWSV--NGEQEITDIKEFGQIPIMVKSNRCHIEKLSPADLIKSREESEEL 172

Query: 104  GGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKL 163
            GGYFI+NG E++ R +I+P++NY M++VRSSF ++   YT     IRCVR D++S T  L
Sbjct: 173  GGYFIVNGNEKIIRMLIIPRRNYVMALVRSSFLNKGTHYTKFGTQIRCVRPDETSHTNTL 232

Query: 164  YYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSP 223
            +YL +G+    F  +  EYL+PV ++LKAL++TND EIF+ +      K KK+       
Sbjct: 233  HYLSDGNCIFRFSWRKNEYLVPVVMILKALINTNDKEIFDSIVG----KDKKD------T 282

Query: 224  LVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHL 283
            ++ + V+I+L   ++  L  + Q LQ++GE F+ V++  +  ++  V + +++  + VHL
Sbjct: 283  ILVDHVEILLRTYKNYELYNQKQTLQYLGEKFRVVLNVDEDLTHERVGQELLKKIVLVHL 342

Query: 284  NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKG 343
            ++N DKF +LIFM++KL+SLV      DNPDS QNQEILL G L  + +KEK+ED+L   
Sbjct: 343  DNNYDKFRMLIFMIRKLYSLVFGQCCPDNPDSAQNQEILLGGFLYGMIIKEKIEDYLLSL 402

Query: 344  KKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRA 403
            +  +  ++       +FF+   I K+ ++ P+  IG+ ++  L TG L + TGLDLQQ  
Sbjct: 403  RNTVIQDLRKPNNSVNFFDKKYISKLFQRVPN-DIGSKLQYFLSTGNLVSSTGLDLQQTT 461

Query: 404  GYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLL 463
            G+T+ AE+LNF R++S FR VHRGA FA +++ +VRKLLPE+WGF+CPVHTPDG PCGLL
Sbjct: 462  GFTIIAEKLNFYRYLSHFRTVHRGAFFADVKSVTVRKLLPEAWGFICPVHTPDGAPCGLL 521

Query: 464  NHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDG 523
            NH+TS C++ +   S  N+        SI  +L+ +G+ P+   L         +V L+G
Sbjct: 522  NHLTSKCKIVT---SNINV-------DSIPYLLVKLGVDPTSNML----GTEYSTVQLNG 567

Query: 524  RVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVR 583
            +++G        ++   LR  K   +  IP +LE+G +P S GG Y GLY+F+S  + +R
Sbjct: 568  KIIGYCMHEVASRIAHLLRYWKTEKSHNIPLELEIGLIPKSEGGQYHGLYIFSSKSRMIR 627

Query: 584  PVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVAN 643
            PV+ + L  E+      +G FEQV++ I        G    +  +H EI+ + M S++A+
Sbjct: 628  PVKYLPLNKED-----FVGSFEQVYLNISLGSHFSKGVDTQY--SHSEINTSNMFSILAS 680

Query: 644  LTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGI 703
            LTP+SD NQSPRNMYQCQMAKQTMG    +L++R D KLY LQT QTPIVR+ TY  YG+
Sbjct: 681  LTPFSDFNQSPRNMYQCQMAKQTMGTPASSLRYRTDNKLYLLQTGQTPIVRSKTYDLYGL 740

Query: 704  DEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQ 763
            D +P GTNAIVAV++YTGYDMEDA+++NKSS +RG  +  IY++E +DL   G K  +G+
Sbjct: 741  DNFPNGTNAIVAVISYTGYDMEDALVINKSSYERGFAYATIYKSEKVDL---GQKRKKGE 797

Query: 764  KL-----FRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSES 818
            ++     F  +K        +D+DGLP +G  +  G+P  + +++TT         G+E 
Sbjct: 798  QIIYHFGFGNDKLHPKWLEKLDADGLPMIGVKLEEGDPLAAYFNETTGKTIIQEYHGTED 857

Query: 819  VFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
            VFV+ V +   +S ++  Q  +I+ R  R   IGDKFSSRHGQKGVCSQ WP  DMPFS 
Sbjct: 858  VFVEEVRLLGNDSGDMECQCIHIKLRIARPITIGDKFSSRHGQKGVCSQKWPAADMPFSE 917

Query: 878  VTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDE 937
             +G++PD+IINPHAFPSRMTI M +ES+A K G+LHG   D+TPF             +E
Sbjct: 918  -SGIQPDIIINPHAFPSRMTIGMFIESMAGKAGALHGLIEDSTPFI-----------FNE 965

Query: 938  SKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRS 997
              +  D  G+ L   G+ Y+G E  YSG+ G  +  EIF+G VYYQRLRHMVSDKFQVR+
Sbjct: 966  ENTAADYFGKQLIKAGYAYNGSETFYSGITGDIMEVEIFVGIVYYQRLRHMVSDKFQVRT 1025

Query: 998  TGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCG 1057
            TG +  +T QP+KGRKR GGIRFGEMERDS++AHG AY+L DRL  CSDY  + +C +CG
Sbjct: 1026 TGPVHSLTHQPVKGRKRAGGIRFGEMERDSIIAHGTAYILQDRLMNCSDYTQSWICKICG 1085

Query: 1058 SVLTATFIHPQKRAIREIGGLPPARAPKKVTCHAC--------------QTSKG------ 1097
            S+L+         +I  IG      +   V C+ C              Q S G      
Sbjct: 1086 SILSLI------SSITTIGTGNTFNS--NVRCYLCALEATGFENDSDIWQDSTGRKFKGG 1137

Query: 1098 --METVAMPYVFRYLAAELAAMNIKITLQL 1125
              +  +A+PYVF+YLA ELA+MN+K+ L L
Sbjct: 1138 DNIAVIALPYVFKYLATELASMNVKLKLNL 1167


>gi|409079585|gb|EKM79946.1| hypothetical protein AGABI1DRAFT_119994 [Agaricus bisporus var.
            burnettii JB137-S8]
          Length = 1219

 Score =  903 bits (2333), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1147 (43%), Positives = 697/1147 (60%), Gaps = 109/1147 (9%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
              R+   SY G++   ++  + DA         + G  P+M+++ RC+L+G  S  LV+ 
Sbjct: 123  EARERLTSYRGRMT--LKICWTDAHGQKNETIKDCGLLPIMVRSVRCNLKGLSSAALVAK 180

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
             EE  E GGYFI+NG ER+ R +ILP++N+ +S++R SF +R   YT  AV IRCVR DQ
Sbjct: 181  HEEPEEFGGYFIINGNERLIRYLILPRRNHVISLIRPSFANRGLSYTQYAVQIRCVRPDQ 240

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
            +S T  L+YL NGS  L F  + +EY++P+ ++LKA+V  +D EIF  +       Y+  
Sbjct: 241  TSATNTLHYLSNGSAMLRFSWRKQEYVIPIMLILKAMVGASDKEIFEGVIM---RDYENT 297

Query: 217  KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
                    +++RV+++L   +  +L T  QCL ++G+ F+ V++  +  +  A+ + +++
Sbjct: 298  -------FLTDRVELLLRSFKVFTLNTGEQCLDYLGDKFRVVLNLPEDWTNTAIGKWLVQ 350

Query: 277  DYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
              I VHL+   DKF +L+FML+KLF+LV  +  +DNPDS Q+QE+LLPG L  + +KE++
Sbjct: 351  KMILVHLDSPRDKFRMLLFMLRKLFALVSSSCCADNPDSPQHQEVLLPGTLYGMIIKERM 410

Query: 337  EDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
            E+ L      +  ++ N G   DF +     KV  K  +  IG  +   L TG L + TG
Sbjct: 411  EEILNNICNTVMLDVRN-GATVDFHDKRYFTKVTSK-VNFDIGARLANFLATGNLISPTG 468

Query: 397  LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
            LDLQQ +G+T+ AE+LN+ R+IS FR +HRGA FA L+TT+VRKLLPE+WGFLCPVHTPD
Sbjct: 469  LDLQQASGFTIVAEKLNWQRYISHFRCIHRGAFFAELKTTTVRKLLPEAWGFLCPVHTPD 528

Query: 457  GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIG-VGMIPSLPKLVKSGPPA 515
            G PCGLLNH++ TCR+ +           S +  + L  L+G  GM       +      
Sbjct: 529  GSPCGLLNHLSRTCRIVT-----------SPLAVAHLPSLLGSCGMTQVFTPSING--QK 575

Query: 516  VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLF 575
             +SV LDGR++G    S   ++  +LR  K    + +P DLE+G+VP S GG YPGL+LF
Sbjct: 576  NISVQLDGRIIGWAQPSVASQLAKNLRVWKTEGKNGVPLDLEIGFVPESDGGQYPGLFLF 635

Query: 576  TSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEEIHP 634
             +  + +RPV+   LP+ +   I   G FEQV+M + C P+  D        +TH E +P
Sbjct: 636  ANRSRMMRPVK--YLPNGKDDQI---GSFEQVYMNVACLPEEIDTN------STHVEHNP 684

Query: 635  TGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVR 694
            T  LS++ANLTP+SD NQSPRN+YQCQM KQ+MG    ALK R D KLY LQT Q+P+VR
Sbjct: 685  TNFLSILANLTPFSDFNQSPRNIYQCQMGKQSMGTPSTALKHRTDNKLYRLQTGQSPVVR 744

Query: 695  TNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD 754
               +  Y +D YP GTNAIVAV++YTGYDMEDAMILNKS+ +RG  +G +Y+++ +DL D
Sbjct: 745  PMLHNTYAMDSYPNGTNAIVAVISYTGYDMEDAMILNKSAHERGFAYGTVYKSQIVDLKD 804

Query: 755  --DGNKVDRGQKLF------RRNKDAKSLHSV--IDSDGLPYVGQMIHPGEPYCSIYDKT 804
                NK      L        R +  ++ H V  +D DGLPY+G  +  G+P  +  D+T
Sbjct: 805  MRGANKSVTAPSLHFGLGPDVRLEGDRAHHCVDFLDLDGLPYIGTRLKAGDPIAAYIDET 864

Query: 805  TNSWRTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQKGV 863
                +    KG E  +VD V +   +S +   QK ++  R TR+P+IGDKFSSRHGQKGV
Sbjct: 865  AGRTKFVKYKGDEMAYVDEVRLLASDSGDTELQKMHVTLRITRSPVIGDKFSSRHGQKGV 924

Query: 864  CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFA 923
            CSQ WP +DMPF+  +GM+PD+IINPHAFPSRMTI ML+ES+A K G++HG   DATPF 
Sbjct: 925  CSQKWPAVDMPFTE-SGMQPDVIINPHAFPSRMTIGMLVESMAGKAGAMHGLAQDATPFK 983

Query: 924  NSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQ 983
             S K T            +D  G+ L   G+NY+G E +YSG+ G E   +I+IG VYYQ
Sbjct: 984  FSEKDT-----------AIDYFGKQLSAAGYNYYGNEPMYSGITGQEFAADIYIGVVYYQ 1032

Query: 984  RLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHT 1043
            RLRHMV DKFQVR+TG +D ITRQP+KGRKR GGIRFGEMERD+L+AHGA++LL DRL  
Sbjct: 1033 RLRHMVLDKFQVRTTGPVDPITRQPVKGRKRAGGIRFGEMERDALIAHGASFLLQDRLMN 1092

Query: 1044 CSDYHVADVCSLCGSVLTATF--IHPQKRAIREIGGLPPARAPKKVTCHACQ-------- 1093
            CSDY  A VC  CGS+++  +  I   + ++   G + P   P    C  C+        
Sbjct: 1093 CSDYSTAWVCRTCGSLISLGYEDISLGEVSLGTSGSIKPT-GPSGEYCRVCRAAAEEEEE 1151

Query: 1094 ---------------------------------TSKG--METVAMPYVFRYLAAELAAMN 1118
                                             ++KG  ++ VA+PYVFRYL AELA+M 
Sbjct: 1152 HERQALSTSQQSQRPPQNGVQVAISSQNVLGRASNKGGDLDVVAVPYVFRYLCAELASMG 1211

Query: 1119 IKITLQL 1125
            I ++L++
Sbjct: 1212 IAVSLEV 1218


>gi|410929909|ref|XP_003978341.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like [Takifugu
            rubripes]
          Length = 1134

 Score =  902 bits (2332), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/1098 (43%), Positives = 668/1098 (60%), Gaps = 77/1098 (7%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR  + SY GKL+AD+ +        ++++  + G  P+M+K++ C+L G   ++LV   
Sbjct: 103  CRGRRCSYKGKLVADISWSINGIPKGIIKQ--SLGHLPIMVKSQLCNLHGLTPRELVEHH 160

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EEA EMGGYFI+NG+E+V R +I+P++NYP++M R  ++ R +GYT   + +RCV+ D +
Sbjct: 161  EEAEEMGGYFIVNGIEKVIRMLIMPRRNYPIAMSRPKWKSRGQGYTQYGMAMRCVKDDHT 220

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            ++ + L+YL NG+V L F  Q + + LP+G  LKALVD +D  I+  L         +E 
Sbjct: 221  AINMTLHYLDNGTVMLNFIYQKELFFLPLGFALKALVDFSDFHIYQELV------KGRED 274

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
             +     V+E +++++ E       T+ + L  +GE F+  ++  +  +    A  ++ +
Sbjct: 275  NSFYKKCVTEMLRLVMEE----GCITQSKVLNFLGERFRVKMNLPEWYTNEQCAHILLDE 330

Query: 278  YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
             + +HL  N +KF +L  M +KLF+      + +NPDS+  QE+L PG L  ++LKE++ 
Sbjct: 331  CVCIHLKTNVEKFYMLCLMTRKLFTFAKQECMEENPDSITFQEVLTPGQLYLMFLKERMA 390

Query: 338  DWLRKGKKLIQDEIENNGKKFDF-FNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
             WL      ++   E    + +  +N  N+ K+   N    I  S E +L TG L++++G
Sbjct: 391  AWLVS----VKLAFEKKAARLNLSWNAENVMKIF--NMGADISKSFEYLLATGNLSSKSG 444

Query: 397  LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
            L + Q  G  V A++LNF+R++S FR VHRGA+FA +RTTSVRKLLPESWGFLCPVHTPD
Sbjct: 445  LGMLQATGLCVVADKLNFIRYLSHFRCVHRGAAFAKMRTTSVRKLLPESWGFLCPVHTPD 504

Query: 457  GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAV 516
            GEPCGL+NHMT+ C + +   S           TS+  +L  +G+ P     V   P   
Sbjct: 505  GEPCGLMNHMTANCEIVAQAVST----------TSLPALLCSLGVTP-----VDGAPGQA 549

Query: 517  LS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGA-YPG 571
             S    VLLDG VVG + S     VV  LRR KV     IP   E+  VP +   + YP 
Sbjct: 550  YSDCYPVLLDGAVVGWVESELAPAVVDSLRRFKVLKEKKIPAWTEIVLVPKTGKPSLYPA 609

Query: 572  LYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEE 631
            L LFT+P + +RPV+N+S+  +E     LIG FEQ++M +    G           TH+E
Sbjct: 610  LLLFTTPCRLMRPVQNLSVGRQE-----LIGTFEQLYMNV----GIFEDEVTPGVTTHQE 660

Query: 632  IHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTP 691
            + P  MLSVVAN  PYSDHNQSPRNMYQCQM KQTMGF +     R+D KLY LQTPQ+P
Sbjct: 661  LFPHSMLSVVANFIPYSDHNQSPRNMYQCQMGKQTMGFPLHTFLDRSDNKLYRLQTPQSP 720

Query: 692  IVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETID 751
            +VR + Y  Y +D YP+GTNAIVAV++YTGYDMEDAMI+NK+S +RG  HG IY+TE +D
Sbjct: 721  LVRPSMYDHYDLDNYPSGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSIYKTEVVD 780

Query: 752  LSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTN 811
            L++     D    +F        +   +D+DGLP++G ++  G+P  S  +  T      
Sbjct: 781  LAERVKGDD--SVVFGTGPGGPGVEDKLDADGLPHIGSVLRHGDPLYSYINLNTGQSVIC 838

Query: 812  SRKGSESVFVDYVAV-DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPD 870
              +  E+  VD + +    N     ++  I  R  RNP IGDKF+SRHGQKG+ S+LWP 
Sbjct: 839  YYRSQEACVVDNIKICSNDNGSGRFKRVCITTRVPRNPTIGDKFASRHGQKGILSRLWPA 898

Query: 871  IDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTN 930
             DMPF+  +GM PD++ NPH FPSRMTI ML+ES+A K G+LHG   DATPF  S     
Sbjct: 899  EDMPFTE-SGMCPDILFNPHGFPSRMTIGMLIESMAGKSGALHGLSHDATPFTFS----- 952

Query: 931  GDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVS 990
                  E  S ++  GEMLR  G+NY+G E LYSG+ G EL  +IFIG VYYQRLRHMVS
Sbjct: 953  ------EDNSALEHFGEMLRAGGYNYYGTERLYSGLSGEELEADIFIGVVYYQRLRHMVS 1006

Query: 991  DKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVA 1050
            DKFQVR+TG  D++T QP+ GR   GGIRFGEMERD+LLAHG+++LLHDRL  CSD  VA
Sbjct: 1007 DKFQVRTTGARDKVTNQPVGGRNVEGGIRFGEMERDALLAHGSSFLLHDRLFNCSDRSVA 1066

Query: 1051 DVCSLCGSVLTATFIHPQKRAIREIGGLPP---ARAPKKVTCHACQTSKGMETVAMPYVF 1107
             VC  CGS+L+     P           PP   A   +K  C  C  S+ + +V++PYVF
Sbjct: 1067 QVCVDCGSLLSPLLEKP-----------PPYWSATRHRKTVCVLCGKSESVASVSVPYVF 1115

Query: 1108 RYLAAELAAMNIKITLQL 1125
            RY  AELAAMNIK+ L++
Sbjct: 1116 RYFVAELAAMNIKVKLEV 1133


>gi|395853612|ref|XP_003799298.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 [Otolemur
            garnettii]
          Length = 1078

 Score =  900 bits (2326), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1123 (43%), Positives = 671/1123 (59%), Gaps = 89/1123 (7%)

Query: 12   LRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNF 71
            L+EL R H+ESF+Y + EGLS    H  QA IS+    ++            ++++  +F
Sbjct: 35   LQELTRAHVESFNYAVREGLS----HAVQADISWAVNGIS----------KGIIKQ--SF 78

Query: 72   GQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMV 131
            G  P+M+K++ C+L G   Q L+   EEA EMGGYFI+NG+E+V R +I+P++N+P++M+
Sbjct: 79   GYVPIMVKSKLCNLDGLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMI 138

Query: 132  RSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLK 191
            R  ++ R  GYT   + + CVR++ S+V + L+YL NG+V L F  + + + LP+G  LK
Sbjct: 139  RPKWKSRGPGYTQYGISMHCVREEHSAVNMNLHYLENGTVTLNFIYRKELFFLPLGFALK 198

Query: 192  ALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHI 251
            ALV  +D +IF  L         KE  +     VS+ ++I+  E      +T+ Q L ++
Sbjct: 199  ALVSFSDYQIFQELI------KGKEDDSFFRNSVSQMLRIVTEE----GCSTQKQVLNYL 248

Query: 252  GEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSD 311
            GE F+  ++          AE ++   I +HL  N +KF +L  M +KLF+L     + D
Sbjct: 249  GECFRVKLNLPDWYPNEQAAEFLVNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMED 308

Query: 312  NPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVME 371
            NPDSL NQE+L PG L  ++LKEK+E WL   K     + +      +  NL  I  +  
Sbjct: 309  NPDSLVNQEVLTPGQLFLMFLKEKMEAWLVSIKIAFDKKAQKTNVSMNTDNLMKIFTL-- 366

Query: 372  KNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFA 431
                  +    E +  TG L ++TGL   Q +G  V A++LNF+R++S FR VHRGA FA
Sbjct: 367  ---GSDLTRPFEYLFATGNLRSKTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFA 423

Query: 432  GLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS 491
             +RTT+VR+LLPESWGFLCPVHTPDGEPCGL+NH+T+ C V + +             TS
Sbjct: 424  KMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQF----------VYTTS 473

Query: 492  ILRVLIGVGMIPSLPKLVKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVS 547
            I  +L  +G+ P     V   P    S    VLLDG +VG +       +   LR  KV 
Sbjct: 474  IPVLLCSLGVTP-----VDGAPHRPYSECYPVLLDGVMVGWVDKDLAPGIAHSLRHFKVL 528

Query: 548  AASVIPDDLEVGYVPLSLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQ 606
                IP  +EV  +P++   + YPGLYLFT+P + VRPV+N+ L  EE     LIG  EQ
Sbjct: 529  REKRIPPWMEVALIPMTGKASLYPGLYLFTTPCRLVRPVQNLELGKEE-----LIGTMEQ 583

Query: 607  VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQT 666
            +FM I   +        A   TH+E+ P  +LSV+AN  P+SDHNQSPRNMYQCQM KQT
Sbjct: 584  IFMNIAIFED----EVIAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQT 639

Query: 667  MGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMED 726
            MGF +   + R+D KLY LQTPQ+P+VR   Y  Y +D YP GTNAIVAV++YTGYDMED
Sbjct: 640  MGFPLLTYQDRSDNKLYRLQTPQSPLVRPCMYDYYDMDNYPIGTNAIVAVISYTGYDMED 699

Query: 727  AMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPY 786
            AMI+NK+S +RG  HG +Y++E IDLS+   + D       +  D + L   +D DGLP+
Sbjct: 700  AMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDDSLVFGVKPGDPRILQK-LDDDGLPF 758

Query: 787  VGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHT 845
            +G  +  G+PY    +  T        K  E+  VD + V   ++ +   K   I  R  
Sbjct: 759  IGAKLQYGDPYYGYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGRFKCICITMRVP 818

Query: 846  RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
            RNP IGDKF+SRHGQKG+ S+LWP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+
Sbjct: 819  RNPTIGDKFASRHGQKGILSRLWPTEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESM 877

Query: 906  AAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSG 965
            A K  +LHG   DATPF            T    S ++  GEML+  G+N++G E LYSG
Sbjct: 878  AGKSAALHGLCHDATPF------------TFSENSALEYFGEMLKAAGYNFYGTERLYSG 925

Query: 966  VYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMER 1025
            + G EL  +IFIG VYYQRLRHMVSDKFQVR+TG  D++T QPI GR   GGIRFGEMER
Sbjct: 926  ISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMER 985

Query: 1026 DSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP- 1084
            D+LLAHG ++LLHDRL  CSD  VA VC  CGS+L+     P           PP+ +  
Sbjct: 986  DALLAHGTSFLLHDRLFNCSDRSVAHVCVECGSLLSPLLEKP-----------PPSWSAM 1034

Query: 1085 --KKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
              +K  C  C  S  ++TV++PYVFRY  AELAAMNIK+ L +
Sbjct: 1035 RNRKYNCTLCNRSDTIDTVSVPYVFRYFVAELAAMNIKVKLDV 1077


>gi|444710488|gb|ELW51468.1| DNA-directed RNA polymerase I subunit RPA2 [Tupaia chinensis]
          Length = 1135

 Score =  900 bits (2326), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/1175 (42%), Positives = 685/1175 (58%), Gaps = 120/1175 (10%)

Query: 2    ARKKSADFEPLRELVRHHIESFDYMLDEGLSEMFD------------------------- 36
            A++K+A    L+EL R H+ESF+Y + EGLS                             
Sbjct: 29   AQQKAA----LQELTRAHVESFNYAVREGLSHAVQAIPPFEFAFNNERISLTIVDAVISP 84

Query: 37   -----------------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLK 79
                              CR  + +Y GKL AD+ +        ++++    G  P+M+K
Sbjct: 85   PTVPKGTICKELNVYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQFL--GYVPIMVK 142

Query: 80   TRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRR 139
            ++ C+L     Q L+   EEA EMGGYFI+NG+E+V R +I+P++N+P++MVR  ++ R 
Sbjct: 143  SQLCNLYNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMVRPKWKTRG 202

Query: 140  EGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDL 199
             GYT   V + CVR++ S+V + L+YL NG+V L F  + + + LP+G  LKALV+ +D 
Sbjct: 203  PGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVNFSDY 262

Query: 200  EIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVI 259
            +IF  L         KE+ +     VS+ ++I++ E      +T+ Q L ++GE F+  +
Sbjct: 263  QIFQELI------KGKEEDSFFRNSVSQMLRIVVEE----GCSTQKQVLNYLGECFRVKL 312

Query: 260  DGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQ 319
            +     S    AE +    I +HL  + +KF +L  M +KLF+L     + +NPDSL NQ
Sbjct: 313  NLTDWYSNEQAAEFLFDQCICIHLKSSTEKFYVLCLMTRKLFALAKGECMEENPDSLVNQ 372

Query: 320  EILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIG 379
            E+L PG L  ++LKEK+E WL   K  +    +      +  NL  I      N    + 
Sbjct: 373  EVLTPGQLFLMFLKEKMEAWLVSIKIALDKRAQKTNVSINTENLMRIF-----NLGTDLT 427

Query: 380  TSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVR 439
               E +L TG L ++TGL   Q +G  V A++LNF+R++S FR VHRGA FA +RTT+VR
Sbjct: 428  RPFEYLLATGNLRSKTGLGFLQDSGLCVVADKLNFVRYLSHFRCVHRGADFAKMRTTTVR 487

Query: 440  KLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGV 499
            +LLPESWGFLCPVHTPDGEPCGL+NH+T+ C V + +             TSI  +L  +
Sbjct: 488  RLLPESWGFLCPVHTPDGEPCGLMNHLTAICEVVTQF----------VYTTSIPALLCNL 537

Query: 500  GMIPSLPKLVKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDD 555
            G+ P     V   P    S    VLLDG +VG +       V   LR  KV     IP  
Sbjct: 538  GVTP-----VDGAPHRPYSECYPVLLDGVMVGWVDKELAPGVADSLRHFKVLREKRIPPW 592

Query: 556  LEVGYVPLSLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCP 614
            +EV  +P++   + YPGL+LFT+P + VRPV+N+ L  EE     LIG  EQ+FM I   
Sbjct: 593  MEVALIPMTGKPSLYPGLFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQIFMNIAIF 647

Query: 615  DGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQAL 674
            +        A   TH+E+ P  +LSV+AN  P+SDHNQSPRNMYQCQM KQTMGF +   
Sbjct: 648  ED----EVAAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTY 703

Query: 675  KFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSS 734
            + R+D KLY LQTPQ+P+VR   Y  Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S
Sbjct: 704  QDRSDNKLYRLQTPQSPLVRPYMYDYYEMDNYPIGTNAIVAVISYTGYDMEDAMIVNKAS 763

Query: 735  VDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPG 794
             +RG  HG +Y++E IDLS+   + D       +  D ++L   +D DGLP++G  +  G
Sbjct: 764  WERGFAHGSVYKSEFIDLSEKIKQGDDSLVFGVKPGDPRTLQK-LDDDGLPFIGTKLQYG 822

Query: 795  EPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDK 853
            +PY S  +  T        K  E+  VD + V   ++ +   K   I  R  RNP IGDK
Sbjct: 823  DPYYSYLNLNTGESFVTYYKSKENCIVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDK 882

Query: 854  FSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLH 913
            F+SRHGQKG+ S+LWP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+A K  +LH
Sbjct: 883  FASRHGQKGILSRLWPVEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALH 941

Query: 914  GKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTC 973
            G   DATPF  S           E  S ++  GEML+  G+N++G E LYSG+ G EL  
Sbjct: 942  GLCHDATPFIFS-----------EENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEA 990

Query: 974  EIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGA 1033
            +IFIG VYYQRLRHMVSDKFQVR+TG  D++T QPI GR   GGIRFGEMERD+LLAHG 
Sbjct: 991  DIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFGEMERDALLAHGT 1050

Query: 1034 AYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP---KKVTCH 1090
            ++LLHDRL  CSD  VA VC  CGS+L+     P           PP+ +    +K  C 
Sbjct: 1051 SFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKP-----------PPSWSAMRNRKYNCA 1099

Query: 1091 ACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
             C  S  ++TV++PYVFRY  AELAAMNIK+ L +
Sbjct: 1100 LCNRSDTIDTVSVPYVFRYFVAELAAMNIKVKLDV 1134


>gi|359321639|ref|XP_003639649.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like isoform 2
            [Canis lupus familiaris]
          Length = 1079

 Score =  900 bits (2326), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1123 (43%), Positives = 668/1123 (59%), Gaps = 88/1123 (7%)

Query: 12   LRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNF 71
            L+EL R H+ESF+Y + EGLS    H  QA IS+            ++  S  + ++F  
Sbjct: 35   LQELTRAHVESFNYAVREGLS----HAVQADISWA-----------VNGISKGIIKQF-L 78

Query: 72   GQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMV 131
            G  P+M+K++ C+L     + L+   EE  EMGGYFI+NG+E+V R +I+P++N+P++M+
Sbjct: 79   GYIPIMVKSKLCNLHSLPPKALIEHHEEVEEMGGYFIINGIEKVIRMLIMPRRNFPIAMI 138

Query: 132  RSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLK 191
            R  ++ R  GYT   V + CVR++ S+V + L+YL NG+V L F  + + + LP+G  LK
Sbjct: 139  RPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALK 198

Query: 192  ALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHI 251
            ALV  +D +IF  L         KE+ +     VS+ ++I++ E      +T+ Q L ++
Sbjct: 199  ALVSFSDYQIFQELI------KGKEEDSFFRNSVSQMLRIVMEE----GCSTQKQVLNYL 248

Query: 252  GEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSD 311
            GE F+  +           AE +    I +HL  N +KF +L  M +KLF+L     + D
Sbjct: 249  GERFRVKLSLPDWYPNEQAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMED 308

Query: 312  NPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVME 371
            NPDSL NQE+L PG L  ++LKEK+E WL   K  +    +      +  NL  I     
Sbjct: 309  NPDSLVNQEVLTPGQLFLMFLKEKMESWLVSIKIALDKRSQKTNVSINTENLMRIF---- 364

Query: 372  KNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFA 431
             N    +    E +L TG L ++TGL   Q +G  V A++LNF+R++S FR VHRGA FA
Sbjct: 365  -NLGTDLTKPFEYLLATGNLRSKTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFA 423

Query: 432  GLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS 491
             +RTT+VR+LLPESWGFLCPVHTPDGEPCGL+NH+T+ C V +                S
Sbjct: 424  KMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQ----------CVYTAS 473

Query: 492  ILRVLIGVGMIPSLPKLVKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVS 547
            +  +L  +G+ P     V   P    S    VLLDG +VG +       +   LR  KV 
Sbjct: 474  VPTLLCSLGVTP-----VDGAPHRPYSECYPVLLDGVMVGWVDKELAPSIAESLRHFKVL 528

Query: 548  AASVIPDDLEVGYVPLS-LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQ 606
                IP  +EV  +P++     YPGL+LFT+P + VRPV+N+ L  EE     LIG  EQ
Sbjct: 529  KEKRIPPWMEVALIPMTGKPSLYPGLFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQ 583

Query: 607  VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQT 666
            +FM I   +        A   TH+E+ P  +LSV+AN  P+SDHNQSPRNMYQCQM KQT
Sbjct: 584  IFMNIAIFED----EVLAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQT 639

Query: 667  MGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMED 726
            MGF +   + R+D KLY LQTPQ+P+VR   Y  Y +D YP GTNAIVAV++YTGYDMED
Sbjct: 640  MGFPLLTYQARSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMED 699

Query: 727  AMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPY 786
            AMI+NK+S +RG  HG +Y++E IDLS+   + D       +  D + L   +D DGLP+
Sbjct: 700  AMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDDSLVFGVKPGDPRILQK-LDDDGLPF 758

Query: 787  VGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHT 845
            +G  +  G+PY S  +  T        K  E+  VD + V   ++ N   K   I  R  
Sbjct: 759  IGARLQYGDPYYSYLNLNTGESFVTYYKSKENCIVDNIKVCSNDTGNGRFKCVCITMRVP 818

Query: 846  RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
            RNP IGDKF+SRHGQKG+ S+LWP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+
Sbjct: 819  RNPTIGDKFASRHGQKGILSRLWPVEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESM 877

Query: 906  AAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSG 965
            A K  +LHG   DATPF  S           E  S ++  GE+L+  G+N++G E LYSG
Sbjct: 878  AGKSAALHGLCHDATPFTFS-----------EENSALEYFGELLKAAGYNFYGTERLYSG 926

Query: 966  VYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMER 1025
            + G EL  +IFIG VYYQRLRHMVSDKFQVR+TG  D++T QPI GR   GGIRFGEMER
Sbjct: 927  ISGIELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFGEMER 986

Query: 1026 DSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP- 1084
            D+LLAHG ++LLHDRL  CSD  VA VC  CGS+L+     P           PP+ +  
Sbjct: 987  DALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKP-----------PPSWSAM 1035

Query: 1085 --KKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
              +K  C  C  S  ++TV++PYVFRY  AELAAMNIK+ L +
Sbjct: 1036 RNRKYNCTLCDRSDTIDTVSVPYVFRYFVAELAAMNIKVKLDV 1078


>gi|190344605|gb|EDK36311.2| conserved hypothetical protein [Meyerozyma guilliermondii ATCC 6260]
          Length = 1166

 Score =  900 bits (2326), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/1112 (43%), Positives = 686/1112 (61%), Gaps = 78/1112 (7%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR+   SY  +LM  V +   D     V E    GQ P+MLK+ RCHL+     +LV  K
Sbjct: 106  CRERMTSYRSRLMLKVTWSVNDGEE--VSEVREAGQIPIMLKSNRCHLEKLSPDELVKQK 163

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EE+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R   YT   + IRCVR DQ+
Sbjct: 164  EESDELGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFGNRGASYTKFGIQIRCVRPDQT 223

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            S T  L+YL +G+V   F  +  EYL+PV +++KALV+T+D EIF+ +            
Sbjct: 224  SQTNVLHYLNDGNVTFRFSWRKNEYLVPVMMIMKALVETSDREIFDGIV----------- 272

Query: 218  GA-VGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
            GA   +  +++R++++L   +  +L ++ + L ++G+ F+ V       S   V + V++
Sbjct: 273  GADTSNSFLTDRLELLLRSYKKYNLYSKQETLAYLGDKFRVVFGATPDVSDIEVGQEVLK 332

Query: 277  DYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
              + VHL D  DKF +L+FM++KL++LV      DNPD+ Q+QE+LL G L  + +KEK+
Sbjct: 333  RIVLVHLEDPKDKFRMLLFMIRKLYTLVAGDCSPDNPDATQHQEVLLGGFLYGMIIKEKI 392

Query: 337  EDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
            E++L+  +  I  +I N G   +F +   + +V  +  ++ IG  ++  L TG L +Q+G
Sbjct: 393  EEYLQSIRLQISSDI-NRGVAVNFNDRRYMSRVFLR-INENIGQKLQYFLSTGNLVSQSG 450

Query: 397  LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
            LDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPVHTPD
Sbjct: 451  LDLQQVSGYTVVAEKINFHRFISHFRMVHRGSFFAELKTTTVRKLLPESWGFLCPVHTPD 510

Query: 457  GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAV 516
            G PCGLLNH+   C++A+         D S +  ++ +  +GV      P    +  P +
Sbjct: 511  GSPCGLLNHLAHKCKIAT------EASDVSTVPAALAQ--LGVS-----PAHAFAAGPNL 557

Query: 517  LSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFT 576
              + LDG+VVG +     + V   LR  KV     +P DLE+GYVP S  G YPGLY+F 
Sbjct: 558  CCIQLDGKVVGWVTHEHGKIVADTLRFWKVEGTHGLPLDLEIGYVPPSNQGQYPGLYIFG 617

Query: 577  SPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC--PDGGDGGRRNAFPATHEEIHP 634
               + +RP + + L  ++     ++GPFEQV+M+I    P+  +         TH E  P
Sbjct: 618  GHSRMMRPTKYLPLDKQD-----IVGPFEQVYMDIAVTPPEIENNVH------THVEFSP 666

Query: 635  TGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVR 694
            T +LS++ANLTP+SD NQSPRNMYQCQM KQTMG    AL  R+D KLY LQT QTPIV+
Sbjct: 667  TNVLSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALAHRSDNKLYRLQTGQTPIVK 726

Query: 695  TNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD 754
             N Y  YG+D +P GTNA+VAV++YTGYDM+DAMI+NKS+ +RG  +G +Y+ E +DLS 
Sbjct: 727  ANLYDDYGMDNFPNGTNAVVAVISYTGYDMDDAMIINKSADERGFGYGTVYKVEKVDLSQ 786

Query: 755  DGNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNS 812
               + D   + F   +D+  +S    +DSDGLP +G  +  G+P  + +D T    +  +
Sbjct: 787  SRRRGDPITQHFGFGEDSWPESWKEKLDSDGLPIIGVKVEEGDPIVAYFDDTLGKTKVKT 846

Query: 813  RKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDI 871
               SE  +++ V +   +S N   Q+  I++R TR P+IGDKFSSRHGQKGVCS+ WP +
Sbjct: 847  YHSSEPAYIEEVKLLGDDSGNQEGQQITIKYRVTRQPLIGDKFSSRHGQKGVCSRKWPQV 906

Query: 872  DMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNG 931
            DMPFS  +G++PD+IINPHAFPSRMTI M +ES+A K G+LHG   D+TP+  S      
Sbjct: 907  DMPFSE-SGIQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPWIFS------ 959

Query: 932  DTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSD 991
                 E  +  D  GE LR  G+NYHG E +YSG  G EL  +I+IG VYYQRLRHMV+D
Sbjct: 960  -----EDDTPADYFGEQLRQAGYNYHGNEPMYSGATGEELRADIYIGCVYYQRLRHMVND 1014

Query: 992  KFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVAD 1051
            KFQVRSTG ++ +T QP+KGRKR GGIR GEMERD+L+ HG ++LL DRL  CSDY    
Sbjct: 1015 KFQVRSTGPVNSLTMQPVKGRKRSGGIRVGEMERDALIGHGTSFLLQDRLLNCSDYTQTS 1074

Query: 1052 VCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHA----------CQTSKGME-- 1099
            +C  CGS+L      P+   +  +  +   R   K   H            +  +G +  
Sbjct: 1075 ICRSCGSLLNTQTSVPR---VGSVASVRCRRCSSKFEAHGKNDNVNDSEIWEDGQGKKFV 1131

Query: 1100 ------TVAMPYVFRYLAAELAAMNIKITLQL 1125
                  TVA+P+V +YL +ELAAM IK+   +
Sbjct: 1132 GGDNTTTVAIPFVLKYLDSELAAMGIKMRFNV 1163


>gi|146422181|ref|XP_001487032.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC 6260]
          Length = 1166

 Score =  900 bits (2326), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/1112 (43%), Positives = 686/1112 (61%), Gaps = 78/1112 (7%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR+   SY  +LM  V +   D     V E    GQ P+MLK+ RCHL+     +LV  K
Sbjct: 106  CRERMTSYRSRLMLKVTWSVNDGEE--VSEVREAGQIPIMLKSNRCHLEKLSPDELVKQK 163

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EE+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R   YT   + IRCVR DQ+
Sbjct: 164  EESDELGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFGNRGASYTKFGIQIRCVRPDQT 223

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            S T  L+YL +G+V   F  +  EYL+PV +++KALV+T+D EIF+ +            
Sbjct: 224  SQTNVLHYLNDGNVTFRFSWRKNEYLVPVMMIMKALVETSDREIFDGIV----------- 272

Query: 218  GA-VGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
            GA   +  +++R++++L   +  +L ++ + L ++G+ F+ V       S   V + V++
Sbjct: 273  GADTSNSFLTDRLELLLRSYKKYNLYSKQETLAYLGDKFRVVFGATPDVSDIEVGQEVLK 332

Query: 277  DYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
              + VHL D  DKF +L+FM++KL++LV      DNPD+ Q+QE+LL G L  + +KEK+
Sbjct: 333  RIVLVHLEDPKDKFRMLLFMIRKLYTLVAGDCSPDNPDATQHQEVLLGGFLYGMIIKEKI 392

Query: 337  EDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
            E++L+  +  I  +I N G   +F +   + +V  +  ++ IG  ++  L TG L +Q+G
Sbjct: 393  EEYLQSIRLQILSDI-NRGVAVNFNDRRYMSRVFLR-INENIGQKLQYFLSTGNLVSQSG 450

Query: 397  LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
            LDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPVHTPD
Sbjct: 451  LDLQQVSGYTVVAEKINFHRFISHFRMVHRGSFFAELKTTTVRKLLPESWGFLCPVHTPD 510

Query: 457  GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAV 516
            G PCGLLNH+   C++A+         D S +  ++ +  +GV      P    +  P +
Sbjct: 511  GSPCGLLNHLAHKCKIAT------EASDVSTVPAALAQ--LGVS-----PAHAFAAGPNL 557

Query: 517  LSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFT 576
              + LDG+VVG +     + V   LR  KV     +P DLE+GYVP S  G YPGLY+F 
Sbjct: 558  CCIQLDGKVVGWVTHEHGKIVADTLRFWKVEGTHGLPLDLEIGYVPPSNQGQYPGLYIFG 617

Query: 577  SPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC--PDGGDGGRRNAFPATHEEIHP 634
               + +RP + + L  ++     ++GPFEQV+M+I    P+  +         TH E  P
Sbjct: 618  GHSRMMRPTKYLPLDKQD-----IVGPFEQVYMDIAVTPPEIENNVH------THVEFSP 666

Query: 635  TGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVR 694
            T +LS++ANLTP+SD NQSPRNMYQCQM KQTMG    AL  R+D KLY LQT QTPIV+
Sbjct: 667  TNVLSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALAHRSDNKLYRLQTGQTPIVK 726

Query: 695  TNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD 754
             N Y  YG+D +P GTNA+VAV++YTGYDM+DAMI+NKS+ +RG  +G +Y+ E +DLS 
Sbjct: 727  ANLYDDYGMDNFPNGTNAVVAVISYTGYDMDDAMIINKSADERGFGYGTVYKVEKVDLSQ 786

Query: 755  DGNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNS 812
               + D   + F   +D+  +S    +DSDGLP +G  +  G+P  + +D T    +  +
Sbjct: 787  SRRRGDPITQHFGFGEDSWPESWKEKLDSDGLPIIGVKVEEGDPIVAYFDDTLGKTKVKT 846

Query: 813  RKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDI 871
               SE  +++ V +   +S N   Q+  I++R TR P+IGDKFSSRHGQKGVCS+ WP +
Sbjct: 847  YHSSEPAYIEEVKLLGDDSGNQEGQQITIKYRVTRQPLIGDKFSSRHGQKGVCSRKWPQV 906

Query: 872  DMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNG 931
            DMPFS  +G++PD+IINPHAFPSRMTI M +ES+A K G+LHG   D+TP+  S      
Sbjct: 907  DMPFSE-SGIQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPWIFS------ 959

Query: 932  DTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSD 991
                 E  +  D  GE LR  G+NYHG E +YSG  G EL  +I+IG VYYQRLRHMV+D
Sbjct: 960  -----EDDTPADYFGEQLRQAGYNYHGNEPMYSGATGEELRADIYIGCVYYQRLRHMVND 1014

Query: 992  KFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVAD 1051
            KFQVRSTG ++ +T QP+KGRKR GGIR GEMERD+L+ HG ++LL DRL  CSDY    
Sbjct: 1015 KFQVRSTGPVNSLTMQPVKGRKRSGGIRVGEMERDALIGHGTSFLLQDRLLNCSDYTQTS 1074

Query: 1052 VCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHA----------CQTSKGME-- 1099
            +C  CGS+L      P+   +  +  +   R   K   H            +  +G +  
Sbjct: 1075 ICRSCGSLLNTQTSVPR---VGSVASVRCRRCSSKFEAHGKNDNVNDSEIWEDGQGKKFV 1131

Query: 1100 ------TVAMPYVFRYLAAELAAMNIKITLQL 1125
                  TVA+P+V +YL +ELAAM IK+   +
Sbjct: 1132 GGDNTTTVAIPFVLKYLDSELAAMGIKMRFNV 1163


>gi|126303601|ref|XP_001373893.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like isoform 1
            [Monodelphis domestica]
          Length = 1135

 Score =  900 bits (2325), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/1175 (42%), Positives = 677/1175 (57%), Gaps = 122/1175 (10%)

Query: 5    KSADFEPLRELVRHHIESFDYMLDEGLSEMFD---------------------------- 36
            K      L+EL R HIESF+Y + EGLS                                
Sbjct: 28   KEQQLPALQELTRAHIESFNYAMREGLSHAVQAIPPLEFAFKDERITLAIVDAVVSPPMV 87

Query: 37   --------------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRR 82
                           CR  + +Y GKL AD+ +     G+P    + + G  P+M+K+R 
Sbjct: 88   PKGSICKELKVYPAECRGRRSTYRGKLTADISWSV--NGNPKGIIKQSLGYIPIMVKSRL 145

Query: 83   CHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGY 142
            C+L     + L+   EEA EMGGYFI+NG+E++ R +I+P++N+P++M+R  ++ R  GY
Sbjct: 146  CNLYNLPPKSLIEHHEEAEEMGGYFIINGIEKIIRMLIMPRRNFPIAMIRPKWKTRGPGY 205

Query: 143  TDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIF 202
            T   + + CVR + +++ + L+YL NGSV + F    + + LP+G VLKALV  +D +IF
Sbjct: 206  THYGISMHCVRDEHTAINMNLHYLENGSVMVNFIYHKELFFLPLGFVLKALVAFSDYQIF 265

Query: 203  NHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGL 262
              L         +E+ +     VS+ +++++ E       T+ Q L ++GE F+  +   
Sbjct: 266  QELI------KGREENSFFRNCVSQMLRVVMEE----GCITQKQVLNYLGERFRVKLSLP 315

Query: 263  QSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEIL 322
               +    AE ++   + +HL  N +KF +L  M +KLF+      + +NPDSL NQE+L
Sbjct: 316  DWYTNVQAAEFLLNQCVCIHLKSNEEKFYVLCLMTRKLFTFAKEECMEENPDSLMNQEVL 375

Query: 323  LPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSI 382
             PG LI ++LKEK+E WL   K  +    +      +  NL  I  +        +    
Sbjct: 376  TPGRLILMFLKEKMEAWLVSVKIALDKRAQKTNVSMNTENLMKIFSM-----GLDLTRPF 430

Query: 383  ETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLL 442
            E  L TG L ++TGL + Q +G  V A++LNF+R++S FR VHRGA+FA +RTT+VRKLL
Sbjct: 431  EYFLATGNLRSKTGLGMLQDSGLCVVADKLNFIRYLSHFRCVHRGAAFAKMRTTTVRKLL 490

Query: 443  PESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMI 502
            PESWGFLCPVHTPDGEPCGL+NHMT+ C V +           +   +SI  +L  +G+ 
Sbjct: 491  PESWGFLCPVHTPDGEPCGLMNHMTAICEVVTQ----------AVYTSSIAPLLCSLGVT 540

Query: 503  PSLPKLVKSGPPA-----VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLE 557
            P        G P+        V+L+G +VG +       +   LR  KV     IP   E
Sbjct: 541  PF------DGTPSQPYSECYPVMLNGIMVGWVEKDLAPAITDSLRNFKVLGKKQIPPWTE 594

Query: 558  VGYVPLS-LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDG 616
            +  +P +     YPGL+LFT+P + +RPV+N+ L  EE     LIG  EQ+FM I   + 
Sbjct: 595  IVLIPKTGKPSLYPGLFLFTTPCRMIRPVQNLELGKEE-----LIGTLEQIFMNIAIFEN 649

Query: 617  GDGGRRNAFPA--THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQAL 674
                     P   TH+E+ P  +LSVVAN  P+SDHNQSPRNMYQCQM KQTMGF +   
Sbjct: 650  ------EIVPGITTHQELFPHSLLSVVANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTY 703

Query: 675  KFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSS 734
            + R+D KLY LQTPQ+P+VR   Y  Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S
Sbjct: 704  QDRSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKAS 763

Query: 735  VDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPG 794
             +RG  HG +Y+TE IDLS+   + D       +  D + L   +DSDGLP++G ++  G
Sbjct: 764  WERGFAHGSVYKTELIDLSEKIKQGDDSLVFGVKPGDLRVLQK-LDSDGLPHIGSLLKYG 822

Query: 795  EPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDK 853
            +P+ S  +  T        K  E+  VD + V   +S N   K+  I  R  RNP IGDK
Sbjct: 823  DPFYSYLNINTGESFVTYYKNKENCLVDNIKVCSNDSGNGKFKSICITMRIPRNPTIGDK 882

Query: 854  FSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLH 913
            F+SRHGQKG+ S+LWP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+A K  +LH
Sbjct: 883  FASRHGQKGILSRLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALH 941

Query: 914  GKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTC 973
            G   DATPF  S           E  S +   GEML+  G+N++G E LYSG+ G EL  
Sbjct: 942  GLCHDATPFTFS-----------EENSALGYFGEMLKAAGYNFYGTERLYSGISGVELEA 990

Query: 974  EIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGA 1033
            +IFIG VYYQRLRHMVSDKFQVR+TG  D++T QPI GR   GGIRFGEMERD+LLAHG 
Sbjct: 991  DIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFGEMERDALLAHGT 1050

Query: 1034 AYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP---KKVTCH 1090
            ++LLHDRL  CSD  VA VC  CGS+L+     P           PP+ +    +K  C 
Sbjct: 1051 SFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKP-----------PPSWSAMRNRKYNCT 1099

Query: 1091 ACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
             C  S  ++TV++PYVFRY  AELAAMNIK+ L +
Sbjct: 1100 VCNQSDTIDTVSVPYVFRYFVAELAAMNIKVKLDV 1134


>gi|344299740|gb|EGW30093.1| hypothetical protein SPAPADRAFT_144076 [Spathaspora passalidarum NRRL
            Y-27907]
          Length = 1165

 Score =  900 bits (2325), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/1108 (43%), Positives = 684/1108 (61%), Gaps = 78/1108 (7%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
             CR+   +Y  +LM  V +   D     V E    GQ P+ML+T RCHL+    ++LV  
Sbjct: 106  ECRERMSTYRSRLMLKVSWSVNDGEE--VSEIREAGQIPIMLQTNRCHLEKLSPKQLVEA 163

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
            KEE+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R   YT   + IRCVR DQ
Sbjct: 164  KEESDELGGYFIVNGIEKLIRMLIVQRRNHPMALIRPSFGNRGASYTKYGIQIRCVRPDQ 223

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
            +S T  L+YL +G+V   F  +  EYL+PV ++LKALV+TND EIF+ +           
Sbjct: 224  TSQTNVLHYLNDGNVTFRFSWRKNEYLVPVTMILKALVETNDREIFDGIV---------- 273

Query: 217  KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
               V +  +++R++++L   +  +L ++ + L ++G+ F+ V       S   V + V++
Sbjct: 274  GNDVDNSFLTDRLELLLRTYKSYNLYSKQETLAYLGDKFRVVFGATPDVSDIDVGKEVLK 333

Query: 277  DYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
              + VHL +N DKF +L+FM++KL+SLV      DNPD+ Q+QE+LL G L  + +KEK+
Sbjct: 334  RIVLVHLPNNTDKFRMLLFMIRKLYSLVAGDCSPDNPDATQHQEVLLGGFLYGMIIKEKI 393

Query: 337  EDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
            E++L+  K  I  +I N G   +F +   + +V  +  ++ IG  ++  L TG L +Q+G
Sbjct: 394  EEYLQNIKLQITSDI-NRGVAINFNDRKYMTRVFSR-INENIGQKLQYFLSTGNLVSQSG 451

Query: 397  LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
            LDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPVHTPD
Sbjct: 452  LDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAELKTTTVRKLLPESWGFLCPVHTPD 511

Query: 457  GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAV 516
            G PCGLLNH+   C++A+  DS     D S++ +++ ++ I        P    +  P +
Sbjct: 512  GSPCGLLNHLAHKCKIATE-DS-----DVSQVTSALAQLGIS-------PADSFAAGPNL 558

Query: 517  LSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFT 576
              V LDG++VG     + + V   LR  KV  +  +P DLE+GYVP S  G YPGL++F 
Sbjct: 559  CCVQLDGKIVGWTTHEQGKIVADTLRFWKVEGSHGLPLDLEIGYVPPSTKGQYPGLFIFG 618

Query: 577  SPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEEIHPT 635
               + +RPV+ + L  ++     ++GPFEQV+M +   P+  +         +H E  PT
Sbjct: 619  GRSRMMRPVKYLPLNKQD-----ILGPFEQVYMNVAVTPEEIENNIH-----SHVEFTPT 668

Query: 636  GMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRT 695
             +LS++ANLTP+SD NQSPRNMYQCQM KQTMG    AL  R+D KLY LQT QTPIV+ 
Sbjct: 669  NILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGTALVHRSDNKLYRLQTGQTPIVKA 728

Query: 696  NTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD 755
            N Y  YG+D +P G NA+VAV++YTGYDM+DAMI+NKS+ +RG  +G +Y+ E +DL   
Sbjct: 729  NLYDDYGMDNFPNGMNAVVAVISYTGYDMDDAMIINKSADERGFGYGTVYKVEKVDLGQS 788

Query: 756  GNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR 813
              + D   + F    D   ++    +D DGLP +G  +  G+P  + YD T    +  + 
Sbjct: 789  RRRGDPITQHFGFGDDEWPETWKEKLDDDGLPLIGVKVEEGDPIVAYYDDTLGKTKVKTY 848

Query: 814  KGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDID 872
              SE  +++ V +   ++ +   Q   I++R TR P+IGDKFSSRHGQKGVCS+ WP ID
Sbjct: 849  HSSEPAYIEEVKLLGDDTGDQEGQMLTIKYRITRAPLIGDKFSSRHGQKGVCSRKWPQID 908

Query: 873  MPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGD 932
            MPFS  TG++PD+IINPHAFPSRMTI M +ES+A K G+LHG   D+TP+  S       
Sbjct: 909  MPFSE-TGIQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPWKFS------- 960

Query: 933  TGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDK 992
                E  +  D  GE LR  G+NYHG E +YSG  G EL  +I+IG VYYQRLRHMV+DK
Sbjct: 961  ----EDDTPADYFGEQLRQAGYNYHGNEPMYSGATGEELRADIYIGCVYYQRLRHMVNDK 1016

Query: 993  FQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADV 1052
            FQVRSTG ++ +T QP+KGRKR GGIR GEMERD+L+ HG A+LL DRL  CSDY    +
Sbjct: 1017 FQVRSTGPVNSLTMQPVKGRKRSGGIRVGEMERDALIGHGTAFLLQDRLLNCSDYTQTPI 1076

Query: 1053 CSLCGSVLTATFIHPQKRAIREIGGLPPARAPK-----------KVTCHACQTSKGME-- 1099
            C  CGS+LT     P+      IG +   R  +                  +  +G +  
Sbjct: 1077 CRSCGSILTTQTTVPR------IGTMASVRCRRCAVKLDSYQGFAADADIWEDGQGKKFV 1130

Query: 1100 ------TVAMPYVFRYLAAELAAMNIKI 1121
                  TVA+P+V +YL +EL+AM IK+
Sbjct: 1131 GGDDTTTVAIPFVLKYLDSELSAMGIKM 1158


>gi|291386321|ref|XP_002709638.1| PREDICTED: RNA polymerase I polypeptide B isoform 2 [Oryctolagus
            cuniculus]
          Length = 1079

 Score =  899 bits (2324), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/1124 (44%), Positives = 666/1124 (59%), Gaps = 90/1124 (8%)

Query: 12   LRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNF 71
            L+EL R H+ESF+Y + EGL     H  QA IS+            ++  S  V ++F  
Sbjct: 35   LQELTRAHVESFNYAVREGLG----HAVQADISWA-----------VNGTSKGVIKQF-L 78

Query: 72   GQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMV 131
            G  P+M+K++ C+L     Q L+   EEA EMGGYFI+NG+E+V R +I+P++N+P++MV
Sbjct: 79   GHVPIMVKSKLCNLYNLSPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMV 138

Query: 132  RSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLK 191
            R  +R R  GYT   V + CVR++ S+V + L+YL NG+V L F  + + + LP+G  LK
Sbjct: 139  RPKWRSRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALK 198

Query: 192  ALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHI 251
            ALV  +D +IF  L           KG          V  +L  V +    T+ Q L ++
Sbjct: 199  ALVSFSDYQIFQELI----------KGKEADSFFRNSVSQMLRIVAEEGCFTQKQVLNYL 248

Query: 252  GEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSD 311
            GE F+  ++          AE +    I +HL  N +KF LL  M +KLF+L     + +
Sbjct: 249  GECFRVKLNLPDWYPNEQAAEFLFNQCICIHLKSNTEKFYLLCLMTRKLFALAKGECMEE 308

Query: 312  NPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDF-FNLANIKKVM 370
            NPDSL NQE+L PG L  ++LKEK+E WL      I+  ++   +K +   N  N+ KV 
Sbjct: 309  NPDSLVNQEVLTPGQLFLMFLKEKMEAWLTS----IKIALDKKAQKTNISINTENLLKVF 364

Query: 371  EKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASF 430
                   +    E +L TG L ++TGL   Q +G  V A++LNF+R++S FR VHRGA F
Sbjct: 365  SM--GADLTRPFEYLLATGNLRSKTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADF 422

Query: 431  AGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRT 490
            A +RTT+VR+LLPESWGFLCPVHTPDGEPCGL+NH+T+ C V + +             T
Sbjct: 423  AKMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAICEVVTQF----------VYTT 472

Query: 491  SILRVLIGVGMIPSLPKLVKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKV 546
            SI  +L  +G+ P     +   P    S    VLLDG +VG +       +   LR  KV
Sbjct: 473  SIPPLLCSLGVTP-----IDGAPHRPYSECYPVLLDGVMVGWVDKELAPGIADSLRLFKV 527

Query: 547  SAASVIPDDLEVGYVPLS-LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFE 605
                 IP  +EV  VP++     YPGLYLFT+P + VRPV+N+ L  EE     LIG  E
Sbjct: 528  LREKRIPPWMEVALVPMTGKPSLYPGLYLFTTPCRLVRPVQNLELGKEE-----LIGTME 582

Query: 606  QVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQ 665
            Q+F+ +   +        A   TH+E+ P  MLSV+AN  P+SDHNQSPRNMYQCQM KQ
Sbjct: 583  QLFLNVAIFED----EVLAGVTTHQELFPHSMLSVIANFIPFSDHNQSPRNMYQCQMGKQ 638

Query: 666  TMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDME 725
            TMGF +   + R+D KLY LQTPQ+P+VR   Y  Y +D YP GTNAIVAV +YTGYDME
Sbjct: 639  TMGFPLLTYQDRSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVTSYTGYDME 698

Query: 726  DAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLP 785
            DAMI+NK+S +RG  HG +Y+TE IDLS+   + D       +  D + L   +D DGLP
Sbjct: 699  DAMIVNKASWERGFAHGSVYKTEFIDLSEKIKQGDDSLVFGVKPGDPRILQR-LDDDGLP 757

Query: 786  YVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRH 844
            ++G  +  G+PY    +  T        K  E+  VD + V   ++ +   K   I  R 
Sbjct: 758  FIGTKLQYGDPYYGYLNLNTGESFVVYYKSKENCIVDNIKVCSNDTGSGKFKCICITMRV 817

Query: 845  TRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLES 904
             RNP IGDKF+SRHGQKG+ S+LWP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES
Sbjct: 818  PRNPTIGDKFASRHGQKGILSRLWPVEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIES 876

Query: 905  VAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYS 964
            +A K  +LHG   DATPF  S           E  S +D  GEML+  G+N++G E LYS
Sbjct: 877  MAGKSAALHGLCHDATPFTFS-----------EQNSALDHFGEMLKAAGYNFYGTERLYS 925

Query: 965  GVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEME 1024
            G+ G EL  +IFIG VYYQRLRHMVSDKFQVR+TG  D++T QPI GR   GGIRFGEME
Sbjct: 926  GISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEME 985

Query: 1025 RDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP 1084
            RD+LLAHG ++LLHDRL  CSD  +A VC  CGS+L+     P           PP+ + 
Sbjct: 986  RDALLAHGTSFLLHDRLFNCSDRSIAHVCVECGSLLSPLLEKP-----------PPSWSA 1034

Query: 1085 ---KKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
               +K  C  C  S  ++TV++PYVFRY  AELAAMNIK+ L +
Sbjct: 1035 MRNRKYNCTLCNRSDTIDTVSVPYVFRYFVAELAAMNIKVKLDV 1078


>gi|417405959|gb|JAA49665.1| Putative rna polymerase ii second largest subunit [Desmodus rotundus]
          Length = 1135

 Score =  899 bits (2323), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/1162 (42%), Positives = 676/1162 (58%), Gaps = 110/1162 (9%)

Query: 12   LRELVRHHIESFDYMLDEGLSEMFD----------------------------------- 36
            L+EL + H+ESF+Y + EGLS                                       
Sbjct: 35   LQELTQAHVESFNYAVREGLSHAVQAIPPFEFAFKDERISLTIVDAVISPPTVPKGSICK 94

Query: 37   -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
                    CR  + +Y GKL AD+ +         +++    G  P+M+K++ C+L G  
Sbjct: 95   ELNVYPAECRGRRSTYRGKLTADISWAVNGISKGTIKQFL--GYVPIMVKSKLCNLYGLS 152

Query: 90   SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
             + L+   EE  EMGGYFI+NG+E+V R +I+P++N+P++M+R  ++ R  GYT   V +
Sbjct: 153  PKALIEHHEEPEEMGGYFIVNGIEKVIRMLIMPRRNFPIAMIRPKWKARGPGYTQYGVSM 212

Query: 150  RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
             CVR++ S+V + L+YL NG+V L F  Q + + LP+G  LKALV  +D +IF  L    
Sbjct: 213  HCVREEHSAVNMNLHYLENGTVMLNFIYQKELFFLPLGFALKALVSFSDYQIFQELI--- 269

Query: 210  DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
                   KG   +      V  +L  V D   +T+ Q L ++GE F+  +      S   
Sbjct: 270  -------KGKEDNSFFRNSVSQMLRIVMDEGCSTQKQVLDYLGERFRVKLGLPDWYSDEQ 322

Query: 270  VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
             A+ +    I +HL  N +KF +L  M +KLF+L     + DNPDSL NQE+L PG L  
Sbjct: 323  AAKCLFDQCICIHLKSNTEKFYILCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFL 382

Query: 330  IYLKEKLEDWLRKGKKLIQDEIENNGKKFDF-FNLANIKKVMEKNPSKQIGTSIETMLKT 388
            ++LKEK+E WL      I+  ++   +K +   N  N+ K++  N    +    E +L T
Sbjct: 383  MFLKEKMEAWLVS----IKIGLDKKAQKTNMSINTENLMKIL--NLGTDLTKPFEYLLAT 436

Query: 389  GRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGF 448
            G L ++TGL   Q +G  V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGF
Sbjct: 437  GNLRSKTGLGFLQDSGLCVVADKLNFVRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGF 496

Query: 449  LCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKL 508
            LCPVHTPDGEPCGL+NH+T+TC V + +    +        +  L   +GV  +   P  
Sbjct: 497  LCPVHTPDGEPCGLMNHLTATCEVVTQFVYTAS--------SPALLCNLGVTPVDGTPHR 548

Query: 509  VKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGA 568
              +       VLLDG ++G +       V A LR  KV     IP  +EV  VP++   +
Sbjct: 549  PHA---ECYPVLLDGVMIGWVDKELAPSVAASLRHFKVLREKRIPPWMEVALVPITGKPS 605

Query: 569  -YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPA 627
             YPGL+LFT+P + VRPV+N+ L  EE     LIG  EQ+FM I   +        A   
Sbjct: 606  LYPGLFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQLFMNIAVFED----EVFAGVT 656

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH+E+ P  +LSV+AN  P+SDHNQSPRNMYQCQM KQTMGF +   + R+D KLY LQT
Sbjct: 657  THQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQT 716

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
            PQ+P+VR   Y  Y +D YP GTNA+VAV++YTGYDMEDAMI+NK+S +RG  HG +Y++
Sbjct: 717  PQSPLVRPCMYDHYDMDNYPIGTNAVVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKS 776

Query: 748  ETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNS 807
            E IDLS+   + D       +  D +++   +D DGLP++G  +  G+PY S  +  T  
Sbjct: 777  EFIDLSEKIKQGDDSLVFGVKPGDPRTVQK-LDGDGLPFIGAQLQYGDPYYSYVNLNTGE 835

Query: 808  WRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQ 866
                  K  E+  VD + V   ++ +   K   I  R  RNP IGDKF+SRHGQKG+ S+
Sbjct: 836  SSVMFYKSKENCIVDNIKVCSNDTGSGKFKCVCITVRIPRNPTIGDKFASRHGQKGILSR 895

Query: 867  LWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSV 926
            LWP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+A K  +LHG   DATPF  S 
Sbjct: 896  LWPAEDMPFTE-SGMAPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFS- 953

Query: 927  KKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLR 986
                      E  S ++  GEML+  G+NY+G E LYSG+ G EL  +IFIG VYYQRLR
Sbjct: 954  ----------EENSALEYFGEMLKAAGYNYYGTERLYSGISGLELEADIFIGVVYYQRLR 1003

Query: 987  HMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSD 1046
            HMVSDKFQVR+TG  D++T QPI GR   GGIRFGEMERD+LLAHG ++LLHDRL  CSD
Sbjct: 1004 HMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSD 1063

Query: 1047 YHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP---KKVTCHACQTSKGMETVAM 1103
              VA VC  CGS+L+     P           PP+ +    +K  C  C  S  ++TV++
Sbjct: 1064 RSVAHVCVKCGSLLSPLLEKP-----------PPSWSAMRNRKYNCTVCNRSDTVDTVSV 1112

Query: 1104 PYVFRYLAAELAAMNIKITLQL 1125
            PYVFRY  AELAAMNIK+ L +
Sbjct: 1113 PYVFRYFVAELAAMNIKVKLDV 1134


>gi|149023254|gb|EDL80148.1| RNA polymerase 1-2 [Rattus norvegicus]
          Length = 1135

 Score =  899 bits (2323), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1166 (42%), Positives = 680/1166 (58%), Gaps = 118/1166 (10%)

Query: 12   LRELVRHHIESFDYMLDEGLSEMFD----------------------------------- 36
            L++L R H++SF+Y + EGLS                                       
Sbjct: 35   LQDLTRAHVDSFNYAVLEGLSHAVQAIPPFEFAFKDERISLTIVDAAISPPAVPKGTICK 94

Query: 37   -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
                    CR  + +Y GKL AD+ +        ++++    G  P+M+K++ C+L    
Sbjct: 95   ELNIYPAECRGRRSTYRGKLTADISWAVNGVPKGIIKQFL--GYVPIMVKSKLCNLYNLP 152

Query: 90   SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
             Q L+   EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R  ++ R  GYT   V I
Sbjct: 153  PQVLIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKSRGLGYTQFGVSI 212

Query: 150  RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
             CVR++ S+V + L+Y+ NG+V L F  + + + LP+G  LKALV  +D +IF  L    
Sbjct: 213  HCVREEHSAVNMNLHYVENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269

Query: 210  DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
                 KE+ +     VS+ ++I++ E       T+ Q L ++GE F+  +          
Sbjct: 270  ---KGKEEDSFFKNSVSQMLRIVMEE----GCHTQKQVLDYLGERFRVKLSLPDWYPNAE 322

Query: 270  VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
             AE +    I +HL  N DKF LL  M +KLF+L     + DNPDSL NQE+L PG L  
Sbjct: 323  AAEFLFNQCICIHLKSNTDKFYLLCLMTRKLFALARGECMEDNPDSLVNQEVLTPGQLFL 382

Query: 330  IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
            ++LKEK+E+WL   K  +    +      +  NL  I  +       ++    E +L TG
Sbjct: 383  MFLKEKMENWLLSIKIALDKRAQKTNVSINNENLMKIFSM-----GTELTRPFEYLLATG 437

Query: 390  RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
             L ++TGL   Q +G  V A++LNF+R++S FR VHRGA FA +RTT+VRKLLPESWGFL
Sbjct: 438  NLRSKTGLGFMQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRKLLPESWGFL 497

Query: 450  CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
            CPVHTPDG PCGLLNH+T+ C V + +              SI  +L G+G+ P     V
Sbjct: 498  CPVHTPDGAPCGLLNHLTAVCEVVTKF----------VYTASIPALLCGLGVTP-----V 542

Query: 510  KSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
             + P    S    VLLDG +VG +      +V   LRR KV     +P  +EV  +P++ 
Sbjct: 543  DAAPCRPYSDCYPVLLDGVMVGWVDKELAPEVADTLRRFKVLRERRVPPWMEVALIPMTG 602

Query: 566  GGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRN 623
              + YPGL+LFT+P + VRPV+N+ L  EE     L+G  EQ+FM I    D   GG   
Sbjct: 603  KPSLYPGLFLFTTPCRLVRPVQNLELGKEE-----LVGTMEQLFMNIAIFEDEVFGGV-- 655

Query: 624  AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
               +TH+E+ P  +LSV+AN  P+SDHNQSPRNMYQCQM KQTMGF +   + R+D KLY
Sbjct: 656  ---STHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLY 712

Query: 684  HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
             LQTPQ+P+VR   Y  Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG  HG 
Sbjct: 713  RLQTPQSPLVRPCMYDHYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGS 772

Query: 744  IYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDK 803
            +Y++E IDLS+   + D       +  D + +   +D+DGLP++G  +  G+PY    + 
Sbjct: 773  VYKSEFIDLSEKFKQGDDSLVFGVKPGDPRVMQK-LDNDGLPFIGAKLEFGDPYYGYLNL 831

Query: 804  TTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKG 862
             T        K  E+  VD + V   ++ +   K   +  R  RNP IGDKF+SRHGQKG
Sbjct: 832  NTGEGFVVYYKSKENCVVDNIKVCSNDTGSGKFKCVCVTVRVPRNPTIGDKFASRHGQKG 891

Query: 863  VCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPF 922
            + S+LWP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+A K  +LHG   DATPF
Sbjct: 892  ILSRLWPAEDMPFTE-SGMMPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPF 950

Query: 923  ANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYY 982
              S           E  S ++  GEML+  G+N++G E LYSG+ G EL  +IFIG VYY
Sbjct: 951  IFS-----------EENSALEYFGEMLKAAGYNFYGTERLYSGISGMELEADIFIGVVYY 999

Query: 983  QRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLH 1042
            QRLRHMVSDKFQVR+TG  D++T QPI GR   GGIRFGEMERD+LLAHG ++LLHDRL 
Sbjct: 1000 QRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLF 1059

Query: 1043 TCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP---KKVTCHACQTSKGME 1099
             CSD  VA VC  CGS+L+     P           PP+ +    +K  C  C  S  ++
Sbjct: 1060 NCSDRSVAHVCVKCGSLLSPLLEKP-----------PPSWSAMRNRKYNCTVCGRSDSID 1108

Query: 1100 TVAMPYVFRYLAAELAAMNIKITLQL 1125
            TV++PYVFRY  AELAAMNIK+ L +
Sbjct: 1109 TVSVPYVFRYFVAELAAMNIKVKLDV 1134


>gi|432103058|gb|ELK30392.1| DNA-directed RNA polymerase I subunit RPA2 [Myotis davidii]
          Length = 1137

 Score =  899 bits (2323), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1168 (42%), Positives = 671/1168 (57%), Gaps = 120/1168 (10%)

Query: 12   LRELVRHHIESFDYMLDEGLSEMFD----------------------------------- 36
            L+EL + H+ESF+Y + EGLS                                       
Sbjct: 35   LQELTQAHVESFNYAVREGLSHAVGRRAIPPFEFAFKDERISLTIVDAVISPPTVPKGSI 94

Query: 37   ---------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQG 87
                      CR  + +Y GKL AD+ +         +++    G  P+M+K++ C+L  
Sbjct: 95   CKELNVYPAECRGRRSTYRGKLTADISWAVNGISKGTIKQFL--GYVPIMVKSKLCNLYN 152

Query: 88   ADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAV 147
               + L+   EE  EMGGYFI+NG+E+V R +I+P++N+P++M+R  ++ R  GYT   V
Sbjct: 153  LPPKALIEHHEEPEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKARGPGYTQYGV 212

Query: 148  VIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTC 207
             + CVR++ S+V + L+YL NG+V L F  Q + + LP+G  LKALV  +D +IF  L  
Sbjct: 213  SMHCVREEHSAVNMNLHYLENGTVMLNFIYQKELFFLPLGFALKALVSFSDYQIFQELI- 271

Query: 208  CYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESY 267
                     KG   +  +   V  +L  V +   +T+ Q L ++GE F+  +      S 
Sbjct: 272  ---------KGKEDNSFLRNSVTQMLRMVMEEGCSTQKQVLNYLGERFRVKLSLPDWYSN 322

Query: 268  YAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
               AE +    I +HL  N +KF +L  M +KLF+L     + +NPDSL NQE+L PG L
Sbjct: 323  EQAAEFLFNQCICIHLKSNTEKFYVLCLMTRKLFALAKGECMEENPDSLVNQEVLTPGQL 382

Query: 328  ITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLK 387
              ++LKEK+E WL   K  +  + +      +  NL  I  +        +    E +L 
Sbjct: 383  FLMFLKEKMEAWLVSVKIGMDKKAQKTNMSINSENLMKILSL-----GIDLTKPFEYLLA 437

Query: 388  TGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWG 447
            TG L ++TGL   Q +G  V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWG
Sbjct: 438  TGNLRSKTGLGFLQNSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWG 497

Query: 448  FLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPK 507
            FLCPVHTPDGEPCGL+NH+T+ C V + +              SI  +L  +G+ P    
Sbjct: 498  FLCPVHTPDGEPCGLMNHLTAICEVVTQF----------VYTASIPALLCNLGVTPV--- 544

Query: 508  LVKSGPP-----AVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVP 562
                G P         VLLDG +VG +       V A LR  KV     IP  +EV  VP
Sbjct: 545  ---DGTPHRPYAECYPVLLDGVMVGWVDKELAAGVAASLRHFKVLREKRIPPWMEVALVP 601

Query: 563  LSLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGR 621
            ++   + YPGLYLFT+P + VRPVRN+ L  EE     LIG  EQ+FM I   +      
Sbjct: 602  MTGKPSLYPGLYLFTTPCRLVRPVRNLELGKEE-----LIGTMEQLFMNIAIFED----E 652

Query: 622  RNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQK 681
              A   TH+E+ P  +LSV+AN  P+SDHNQSPRNMYQCQM KQTMGF +   + R+D K
Sbjct: 653  VFAGLTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNK 712

Query: 682  LYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCH 741
            LY LQTPQ+P+VR   Y  Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG  H
Sbjct: 713  LYRLQTPQSPLVRPCMYDHYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAH 772

Query: 742  GQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIY 801
            G +Y++E IDLS+   + D       +  D +++   +D DGLP++G  +  G+PY S  
Sbjct: 773  GSVYKSEFIDLSEKIKQGDDSLVFGVKPGDPRTVQK-LDEDGLPFIGAQLQYGDPYYSYV 831

Query: 802  DKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQ 860
            +  T        K  E+  VD + V   +S +   K   I  R  RNP IGDKF+SRHGQ
Sbjct: 832  NLNTGESSVMFYKSKENCIVDNIKVCSNDSGSGKFKCVCITMRIPRNPTIGDKFASRHGQ 891

Query: 861  KGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDAT 920
            KG+ S+LWP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+A K  +LHG   DAT
Sbjct: 892  KGILSRLWPTEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDAT 950

Query: 921  PFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPV 980
            PF  S           E  S ++  GEML+  G+N++G E LYSG+ G EL  +IFIG V
Sbjct: 951  PFTFS-----------EENSALEYFGEMLKAAGYNFYGTERLYSGISGVELEADIFIGVV 999

Query: 981  YYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDR 1040
            YYQRLRHMVSDKFQVR+TG  D++T QPI GR   GGIRFGEMERD+LLAHG ++LLHDR
Sbjct: 1000 YYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDR 1059

Query: 1041 LHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP---KKVTCHACQTSKG 1097
            L  CSD  VA VC  CGS+L+     P           PP+ +    +K  C  C  S  
Sbjct: 1060 LFNCSDRSVAHVCVKCGSLLSPLLEKP-----------PPSWSAMRNRKYNCTVCNRSDT 1108

Query: 1098 METVAMPYVFRYLAAELAAMNIKITLQL 1125
            ++TV++PYVFRY  AELAAMNIK+ L +
Sbjct: 1109 IDTVSVPYVFRYFVAELAAMNIKVKLDV 1136


>gi|392592938|gb|EIW82264.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Coniophora puteana RWD-64-598 SS2]
          Length = 1224

 Score =  899 bits (2323), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/1157 (42%), Positives = 688/1157 (59%), Gaps = 130/1157 (11%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
              R+  +SY G++ A + ++ ++   P      + G  P+M+++ RC+L+   S +LV  
Sbjct: 129  EARERLVSYRGRMQAKICWR-INGEEPTQSIMRDCGLVPIMVRSVRCNLRSLPSSELVRR 187

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
             EE  E GGYFI+NG ER+ R +ILP++N+ +S++R SF +R   YT  AV IRCVR DQ
Sbjct: 188  HEEPEEFGGYFIINGNERLIRYLILPRRNHVISLIRPSFTNRGPSYTQHAVQIRCVRPDQ 247

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC-YDEKYKK 215
            +S T  L+YL NGS  L F  + +EY++PV ++LKAL+  +D EIF HL    +D  +  
Sbjct: 248  TSATNTLHYLANGSAMLRFSWRKQEYVIPVMLILKALIGASDKEIFEHLMMQDFDNTF-- 305

Query: 216  EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
                     +S+RV+++L   +  +L T  QCL+++G+ F+ V+   +  +  A+   ++
Sbjct: 306  ---------LSDRVELLLRSFKRFALYTGEQCLEYLGDKFRVVLGLPEDWTNKALGVWLL 356

Query: 276  RDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEK 335
            +  + VH +   DKF +LIFML+KL++LV      DNPDS Q+QE+LLPG+L  + +KE+
Sbjct: 357  QKMVLVHADSARDKFRMLIFMLRKLYALVSGACCGDNPDSPQHQEVLLPGYLYGMIIKER 416

Query: 336  LEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQT 395
            LE+ L   +  I  ++  +    DF +   I KV+ K  +  IG  +   L TG L + +
Sbjct: 417  LEEGLNAVRNQINIDVRRSEPPVDFIDKRYITKVINK-VNWDIGAKMANFLATGNLISPS 475

Query: 396  GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTP 455
            GLDLQQ +G+T+ AE+LN+LR+IS FR++HRGA FA L+TT+VRKLLPE+WGFLCPVHTP
Sbjct: 476  GLDLQQASGFTIVAEKLNWLRYISHFRSIHRGAFFAELKTTTVRKLLPEAWGFLCPVHTP 535

Query: 456  DGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS-ILRVLIGVGMIPSLPKLVKSGPP 514
            DG PCGLLNH++ TCR+ +           S +  + I  +L+  GM  +    +     
Sbjct: 536  DGSPCGLLNHLSRTCRIVT-----------SPLAVAHIPALLVAHGMTQAFSASIDG--R 582

Query: 515  AVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYL 574
              L V LDGRV+G    S   ++  +LR  K      +P DLE+G+VP S GG YPGL+L
Sbjct: 583  KNLCVQLDGRVIGWARPSVARQLAGNLRFWKTEGQHQVPMDLEIGFVPESRGGQYPGLFL 642

Query: 575  FTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC------PDGGDGGRRNAFPAT 628
            F++  + +RPV+ + L  +  Q    IG FEQV+M+I        PD           +T
Sbjct: 643  FSTRARMMRPVKYL-LNGKADQ----IGSFEQVYMDIAIQPSEIEPD----------VST 687

Query: 629  HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTP 688
            H E  PT  LS++ANLTP+SD NQSPRN+YQCQM KQTMG     ++ R D KLY LQT 
Sbjct: 688  HVEHAPTNFLSILANLTPFSDFNQSPRNIYQCQMGKQTMGTPSTVMQHRTDNKLYRLQTG 747

Query: 689  QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
            QTPIVR   +  Y +D YP GTNAIVAV++YTGYDMEDAMILNKS+ +RG  +G +Y++ 
Sbjct: 748  QTPIVRPRLHNTYAMDAYPNGTNAIVAVISYTGYDMEDAMILNKSAHERGFGYGTVYKSS 807

Query: 749  TIDLSDDGNKVDRGQKLFRRNKDAKSLH-------------------SVIDSDGLPYVGQ 789
             +DL D      RG     +   A +LH                   + +D DGLP +G 
Sbjct: 808  IVDLKD-----MRGAS---KATSAPTLHFGLGYEINTTLGDKQHACCNFVDQDGLPIIGA 859

Query: 790  MIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNP 848
             ++ G+P  +  D  T   +    KG E   VD V V   ++ +   QK  +  R TR+P
Sbjct: 860  KLNAGDPLAAYVDDNTGRTKFVKYKGDEQAIVDTVRVIGADAGDSELQKIQVTLRITRSP 919

Query: 849  IIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
            +IGDKFSSRHGQKGVCSQ WP +DMPF+  +GM+PD+IINPHAFPSRMTI ML+ES+A K
Sbjct: 920  VIGDKFSSRHGQKGVCSQKWPAVDMPFT-ESGMQPDVIINPHAFPSRMTIGMLVESMAGK 978

Query: 909  GGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYG 968
             G++HG   DATPF  S           E  + +   G+ L   G+NY+G E +YSG+ G
Sbjct: 979  AGAMHGLAQDATPFQFS-----------EEDTAISYFGDQLLAAGYNYYGNEPMYSGITG 1027

Query: 969  TELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSL 1028
             E   +I+IG VYYQRLRHMV DKFQVR+TG +DQ+TRQP+KGRKR GGIRFGEMERD+L
Sbjct: 1028 QEFAADIYIGVVYYQRLRHMVLDKFQVRTTGPVDQVTRQPVKGRKRAGGIRFGEMERDAL 1087

Query: 1029 LAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVT 1088
            +AHG ++LL DRL  CSDY  A VC  CGS+++  +           G L  A  P    
Sbjct: 1088 IAHGTSFLLQDRLMNCSDYSTAWVCRTCGSLISLGYDDVSLGEASTSGKL-RATGPGGEY 1146

Query: 1089 CHAC--------------------------------------QTSKG--METVAMPYVFR 1108
            C  C                                       TSKG  ++ +A+PYVFR
Sbjct: 1147 CRVCRAAAEEEDERAREALASGRPAHNHADLRVAIPPSHVLGSTSKGGDLDVIAVPYVFR 1206

Query: 1109 YLAAELAAMNIKITLQL 1125
            YL AELAAM I +++++
Sbjct: 1207 YLCAELAAMGIAVSVEV 1223


>gi|332257256|ref|XP_003277725.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 1
            [Nomascus leucogenys]
          Length = 1135

 Score =  899 bits (2322), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1165 (42%), Positives = 676/1165 (58%), Gaps = 116/1165 (9%)

Query: 12   LRELVRHHIESFDYMLDEGLS--------------------EMFD--------------- 36
            L+EL R H+ESF+Y + EGL                      + D               
Sbjct: 35   LQELTRAHVESFNYAVHEGLGLAVQAIPPFEFTFKDERISFTILDAVISPPTVPKGTICK 94

Query: 37   -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
                    CR  + +Y GKL AD+ +        ++++    G  P+M+K++ C+L    
Sbjct: 95   EVNIYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQFL--GYVPIMVKSKLCNLHNLP 152

Query: 90   SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
             Q L+   EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R  ++ R  GYT   V +
Sbjct: 153  PQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSV 212

Query: 150  RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
             CVR++ S+V + L+YL NG+V L F  + + + LP+G  LKALV  +D +IF  L    
Sbjct: 213  HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269

Query: 210  DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
                 KE  +     VS+ ++I++ E      +T+ Q L ++GE F+  ++         
Sbjct: 270  ---KGKEDDSFLRNSVSQMLRIVMEE----GCSTQKQVLNYLGECFRVKLNVPDWYPNEQ 322

Query: 270  VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
             AE +    I +HL  N +KF +L  M +KLF+L     + DNPDSL NQE+L PG L  
Sbjct: 323  AAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFL 382

Query: 330  IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
            ++LKEKLE WL   K     + +      +  NL  I  +        +    E +  TG
Sbjct: 383  MFLKEKLEGWLVSIKIAFDKKAQKTNVSMNTDNLMRIFTM-----GIDLTKPFEYLFATG 437

Query: 390  RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
             L ++TGL L Q +G  V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGFL
Sbjct: 438  NLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFL 497

Query: 450  CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
            CPVHTPDGEPCGL+NH+T+ C V + +              SI  +L  +G+ P     V
Sbjct: 498  CPVHTPDGEPCGLMNHLTAVCEVVTQF----------VYTASIPALLCNLGVTP-----V 542

Query: 510  KSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS- 564
               P    S    VLLDG +VG +       +   LRR KV     IP  +EV  +P++ 
Sbjct: 543  DGAPHRPYSECYPVLLDGVMVGWVDKEIAPGIADSLRRFKVLREKRIPPWMEVVLIPMTG 602

Query: 565  LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNA 624
                YPGL+LFT+P + VRPV+N+ +  EE     LIG  EQ+FM +   +        A
Sbjct: 603  KPSLYPGLFLFTTPCRLVRPVQNLEMGKEE-----LIGTMEQIFMNVAIFED----EVFA 653

Query: 625  FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
               TH+E+ P  +LSV+AN  P+SDHNQSPRNMYQCQM KQTMGF +   + R+D KLY 
Sbjct: 654  GVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYR 713

Query: 685  LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI 744
            LQTPQ+P+VR + Y  Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG  HG +
Sbjct: 714  LQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSV 773

Query: 745  YQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT 804
            Y++E IDLS+   + D       +  D + L   +D DGLP++G  +  G+PY S  +  
Sbjct: 774  YKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQK-LDDDGLPFIGAKLQYGDPYYSYLNLN 832

Query: 805  TNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGV 863
            T        K  E+  VD + V   ++ +   K   I  R  RNP IGDKF+SRHGQKG+
Sbjct: 833  TGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGI 892

Query: 864  CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFA 923
             S+LWP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+A K  +LHG   DATPF 
Sbjct: 893  LSRLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFI 951

Query: 924  NSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQ 983
             S           E  S ++  GEML+  G+N+HG E LYSG+ G EL  +IFIG VYYQ
Sbjct: 952  FS-----------EENSALEYFGEMLKAAGYNFHGTERLYSGISGLELEADIFIGVVYYQ 1000

Query: 984  RLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHT 1043
            RLRHMVSDKFQVR+TG  D++T QPI GR   GGIRFGEMERD+LLAHG ++LLHDRL  
Sbjct: 1001 RLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFN 1060

Query: 1044 CSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP---KKVTCHACQTSKGMET 1100
            CSD  VA VC  CGS+L+     P           PP+ +    +K  C  C  S  ++T
Sbjct: 1061 CSDRSVAHVCVKCGSLLSPLLEKP-----------PPSWSAMRNRKYNCTLCNRSDTIDT 1109

Query: 1101 VAMPYVFRYLAAELAAMNIKITLQL 1125
            V++PYVFRY  AELAAMNIK+ L +
Sbjct: 1110 VSVPYVFRYFVAELAAMNIKVKLDV 1134


>gi|403303871|ref|XP_003942542.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 1
            [Saimiri boliviensis boliviensis]
          Length = 1135

 Score =  898 bits (2321), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1165 (42%), Positives = 679/1165 (58%), Gaps = 116/1165 (9%)

Query: 12   LRELVRHHIESFDYMLDEGLS--------------------EMFD--------------- 36
            L+EL R H+ESF+Y + EGL                      + D               
Sbjct: 35   LQELTRAHVESFNYAVHEGLGLAVQAIPPFEFAFKDQRISFTILDAVISPPTVPKGTICK 94

Query: 37   -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
                    CR  + +Y GKL AD+ +        ++++  + G  P+M+K++ C+L    
Sbjct: 95   EASVYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQ--SLGYVPIMVKSKLCNLYNLP 152

Query: 90   SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
             Q L+   EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R  ++ R  GYT   V +
Sbjct: 153  PQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSM 212

Query: 150  RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
             CVR++ S+V + L+YL NG+V L F  + + + LP+G  LKALV  +D +IF  L    
Sbjct: 213  HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269

Query: 210  DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
                 KE  +     VS+ ++I++ E      +T+ Q L ++GE F+  ++         
Sbjct: 270  ---KGKEDDSFFRNSVSQMLRIVMEE----GCSTQKQVLNYLGECFRVKLNVPDWYPNEQ 322

Query: 270  VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
             AE ++   I +HL  N +KF +L  M +KLF+L     + DNPDSL NQE+L PG L  
Sbjct: 323  AAEFLLNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFL 382

Query: 330  IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
            ++LKEKLE WL   K     + +      +  NL  I  +        +    E +L TG
Sbjct: 383  MFLKEKLEGWLVSIKIAFDKKAQKTNVSMNTDNLMKIFTM-----GLDLTKPFEYLLATG 437

Query: 390  RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
             L ++TGL L Q +G  V A++LNF+R++S FR VHRG+ FA +RTT+VR+LLPESWGFL
Sbjct: 438  NLRSKTGLGLLQESGLCVVADKLNFIRYLSHFRCVHRGSDFAKMRTTTVRRLLPESWGFL 497

Query: 450  CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
            CPVHTPDGEPCGL+NH+T+ C V + +             TSI  +L  +G+ P     V
Sbjct: 498  CPVHTPDGEPCGLMNHLTAVCEVVTQF----------VYTTSIPALLCNLGVTP-----V 542

Query: 510  KSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS- 564
               P    S    VLLDG +VG +       +   LR  KV     IP  +EV  +P++ 
Sbjct: 543  DGAPHRPYSECYPVLLDGVMVGWVDKELASGIADSLRHFKVLREKRIPPWMEVVLIPMTG 602

Query: 565  LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNA 624
                YPGL+LFT+P + VRPV+N+ L  EE     LIG  EQ+FM +   +        A
Sbjct: 603  KPSLYPGLFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQIFMNVAIYED----EVFA 653

Query: 625  FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
               TH+E+ P  +LSV+AN  P+SDHNQSPRNMYQCQM KQTMGF +   + R+D KLY 
Sbjct: 654  GVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYR 713

Query: 685  LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI 744
            LQTPQ+P+VR + Y  Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG  HG +
Sbjct: 714  LQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSV 773

Query: 745  YQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT 804
            Y++E IDLS+   + D       +  D + L   +D DGLP++G  +  G+PY S  +  
Sbjct: 774  YKSEFIDLSEKIKQGDSSLVFGIKLGDPRVLQK-LDDDGLPFIGAKLQYGDPYYSYLNLN 832

Query: 805  TNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGV 863
            T        K  E+  VD + V   ++ +   K   I  R  RNP IGDKF+SRHGQKG+
Sbjct: 833  TGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGI 892

Query: 864  CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFA 923
             S+LWP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+A K  +LHG   DATPF 
Sbjct: 893  LSRLWPVEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFI 951

Query: 924  NSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQ 983
             S           E  S ++  GEML+  G+N++G E LYSG+ G EL  +IFIG VYYQ
Sbjct: 952  FS-----------EENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQ 1000

Query: 984  RLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHT 1043
            RLRHMVSDKFQVR+TG  D++T QPI GR   GGIRFGEMERD+LLAHG ++LLHDRL  
Sbjct: 1001 RLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFN 1060

Query: 1044 CSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP---KKVTCHACQTSKGMET 1100
            CSD  VA VC  CGS+L+     P           PP+ +    +K  C  C  S  ++T
Sbjct: 1061 CSDRSVAHVCVKCGSLLSPLLEKP-----------PPSWSAMRNRKYNCTLCHRSDTIDT 1109

Query: 1101 VAMPYVFRYLAAELAAMNIKITLQL 1125
            V++PYVFRY  AELAAMNIK+ L +
Sbjct: 1110 VSVPYVFRYFVAELAAMNIKVKLDV 1134


>gi|344233049|gb|EGV64922.1| beta and beta-prime subunits of DNA dependent RNA-polymerase [Candida
            tenuis ATCC 10573]
          Length = 1166

 Score =  898 bits (2320), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/1123 (43%), Positives = 686/1123 (61%), Gaps = 109/1123 (9%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR+  ISY  KL   V +   D     + E  + G  PVML++ RCHLQ     +LV  K
Sbjct: 107  CRERMISYRSKLRLKVTWSVNDGEE--MSEIRDCGLLPVMLRSSRCHLQNLSPDELVKHK 164

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EE+ E GGYFI+NG+E++ R +I+ ++N+PM+++R SF  R   YT   + IRCVR DQ+
Sbjct: 165  EESDEFGGYFIVNGIEKLIRMLIVQRRNHPMALIRPSFASRGNSYTKYGIQIRCVRPDQT 224

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            S T  L+YL +G+V   F  +  EYL+PV ++LKAL++T+D EIF+              
Sbjct: 225  SQTNVLHYLSDGNVTFRFSWKKNEYLVPVQMILKALMETSDREIFD-------------- 270

Query: 218  GAVGSPL----VSERVKIILAEV-QDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAE 272
            G +G+ L    +++R++++L    +  +L +  + L ++G+ F+ V DG    S   V +
Sbjct: 271  GIIGTDLSNSFLTDRLELLLRTYNKSYNLYSNQETLAYLGDKFRVVFDGTPDMSDIEVGK 330

Query: 273  TVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYL 332
             V++  + VHL+ N DKF +L+FM++KL+SLV      DNPD+ Q+QE+LL G L  + +
Sbjct: 331  LVLKRIVLVHLDSNQDKFRMLLFMIRKLYSLVAGDCCPDNPDATQHQEVLLGGFLYGMIV 390

Query: 333  KEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLA 392
            KEK+E++L   K  +  ++ N G K +F     I +V ++  ++ IG  ++  L TG L 
Sbjct: 391  KEKIEEYLNNFKLQVSSDL-NRGLKVNFHERKYISRVFQR-INENIGQKLQYFLSTGNLV 448

Query: 393  TQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPV 452
            +Q+GLDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPV
Sbjct: 449  SQSGLDLQQVSGYTVVAEKINFHRFISHFRMVHRGSFFAELKTTTVRKLLPESWGFLCPV 508

Query: 453  HTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSG 512
            HTPDG PCGLLNH+   C++ +         D S +  ++ +  +G+  + S      + 
Sbjct: 509  HTPDGSPCGLLNHLAHKCKITT------KQSDVSGVPGALSQ--LGISSVNSF-----AA 555

Query: 513  PPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGL 572
             P V  V LDG+++G     + + V   LR  K+  +  IP DLEVGYVP S  G YPGL
Sbjct: 556  GPGVCCVQLDGKILGWTSHEKAKIVADTLRYWKIEGSHNIPLDLEVGYVPPSNKGQYPGL 615

Query: 573  YLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEE 631
            YLF    + VRPV+ + L        +++GPFEQV+M I   P+            +H E
Sbjct: 616  YLFGGHARMVRPVKYLPL-----GKTDIVGPFEQVYMNIAVTPEEITNNIH-----SHVE 665

Query: 632  IHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTP 691
              PT +LS++ANLTP+SD NQSPRNMYQCQM KQTMG     L  R+D KLY LQ+ QTP
Sbjct: 666  FSPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVGLVHRSDNKLYRLQSGQTP 725

Query: 692  IVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETID 751
            IV+ N Y  YG+D +P GTNA+VAV++YTGYDM+DAMI+NKS+ +RG  +G +Y+ E +D
Sbjct: 726  IVKANLYDDYGMDNFPNGTNAVVAVISYTGYDMDDAMIINKSADERGFGYGTVYKVEKVD 785

Query: 752  LSDDGNKVDRGQKL-----FRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN 806
            L   G    RG  +     F  +   +   + +D+DGLP +G  +  G+P  + +D T  
Sbjct: 786  L---GMSRRRGDPITQHIGFGDDDWPEIWQNKLDADGLPQIGVKVEEGDPIIAYFDDTLG 842

Query: 807  SWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQ 866
              +  +   SE  +++ V +   ++ +  Q+ +I++R TR P+IGDKFSSRHGQKGVCS+
Sbjct: 843  KTKVKTYHSSEPAYIEEVKLLADDTNSECQQLSIKYRITRQPLIGDKFSSRHGQKGVCSR 902

Query: 867  LWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSV 926
             WP  DMPFS  TG++PD+IINPHAFPSRMTI M +ES+A K G+LHG   DATP+  S 
Sbjct: 903  KWPQTDMPFSE-TGIQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGMAHDATPWKFS- 960

Query: 927  KKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLR 986
                      ES +  D  G+ L   G+NYHG E +YSGV G EL  +I+IG VYYQRLR
Sbjct: 961  ----------ESDTPADYFGDQLLAAGYNYHGNEPMYSGVTGEELRADIYIGVVYYQRLR 1010

Query: 987  HMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSD 1046
            HMV+DKFQVRSTG ++ +T QP+KGRKR GGIR GEMERD+L+ HG A+LL DRL  CSD
Sbjct: 1011 HMVNDKFQVRSTGPVNSLTMQPVKGRKRSGGIRVGEMERDALIGHGTAFLLQDRLLNCSD 1070

Query: 1047 YHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGME------- 1099
            Y    +C  CGS+LT       + ++  IG +   R      C +C  SK +E       
Sbjct: 1071 YTHTSLCKDCGSLLTT------QASVPRIGSMSSIR------CRSC--SKKLESFSNEFI 1116

Query: 1100 ---------------------TVAMPYVFRYLAAELAAMNIKI 1121
                                 TVA+P+V +YL +ELAAM IK+
Sbjct: 1117 NESDIWEDGQGKKFVGGENTTTVAIPFVLKYLDSELAAMGIKL 1159


>gi|440910777|gb|ELR60535.1| DNA-directed RNA polymerase I subunit RPA2 [Bos grunniens mutus]
          Length = 1135

 Score =  898 bits (2320), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/1165 (42%), Positives = 672/1165 (57%), Gaps = 116/1165 (9%)

Query: 12   LRELVRHHIESFDYMLDEGLSEMFD----------------------------------- 36
            L+EL R H+ESF+Y + EGLS                                       
Sbjct: 35   LQELTRAHVESFNYAVREGLSHAVQAVPPFEFAFKDERICLTIVDAVISPPAVPKGSICK 94

Query: 37   -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
                    CR  + +Y GKL AD+ +        V+++    G  P+M+K++ C+L    
Sbjct: 95   ELNVYPAECRGRRSTYRGKLTADISWSVNGISKGVIKQFL--GYVPIMVKSKLCNLYNLP 152

Query: 90   SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
             + L+   EEA EMGGYFI+NG+E+V R +I+P++N+P++MVR  ++ R  GYT   V +
Sbjct: 153  PKALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMVRPKWKSRGPGYTQYGVSM 212

Query: 150  RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
             CVR++ S+V + L+YL NG+V L F  + + + LP+G  LKALV  +D +IF  L    
Sbjct: 213  HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269

Query: 210  DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
                 KE  +     VS+ ++I++ E      +T+ Q L ++GE F+  +          
Sbjct: 270  ---KGKEDDSFFRNSVSQMLRIVMEE----GCSTQKQVLNYLGERFRVKLSLPDWYPNEQ 322

Query: 270  VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
             AE +    I +HL  N +KF +L  M +KLF+L     + +NPDSL NQE+L PG L  
Sbjct: 323  AAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEENPDSLMNQEVLTPGQLFL 382

Query: 330  IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
            ++LKEKLE WL   K  I  + +      +  NL  I  +        +    E +L TG
Sbjct: 383  MFLKEKLEAWLVSIKIAIDKKSQKTNVSLNNENLMKIFSL-----GIDLTKPFEYLLATG 437

Query: 390  RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
             L ++TGL   Q +G  V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGFL
Sbjct: 438  NLRSKTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFL 497

Query: 450  CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
            CPVHTPDGEPCGL+NH+T+ C V +           S    SI  +L  +G+ P     V
Sbjct: 498  CPVHTPDGEPCGLMNHLTAICEVVTQ----------SVYTASIPALLCNLGVTP-----V 542

Query: 510  KSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS- 564
               P    S    VLLDG ++G         +   LR  KV     IP  +EV  +P++ 
Sbjct: 543  DGTPHRPYSECYPVLLDGVMIGWADKEIAPGIADSLRHFKVLREKRIPPWMEVALIPMTG 602

Query: 565  LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNA 624
                YPGLYLFT+P + VRPV+N+ L  EE     LIG  EQ+FM +   +        A
Sbjct: 603  KPSLYPGLYLFTTPCRLVRPVQNLELGKEE-----LIGTMEQIFMNVAIFED----EVLA 653

Query: 625  FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
               TH+E+ P  +LSV+AN  P+SDHNQSPRNMYQCQM KQTMGF +   + R+D KLY 
Sbjct: 654  GVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTFQDRSDNKLYR 713

Query: 685  LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI 744
            LQTPQ+P+VR   Y  Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG  HG +
Sbjct: 714  LQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSV 773

Query: 745  YQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT 804
            Y++E IDLS+   + D       +  D + L   +D DGLP++G  +  G+PY S  +  
Sbjct: 774  YKSEFIDLSERIKQGDDSLVFGVKPGDPRVLQK-LDDDGLPFIGAQLKYGDPYYSYLNLN 832

Query: 805  TNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGV 863
            T        K  E+  VD + V   ++ N   K   I  R  RNP IGDKF+SRHGQKG+
Sbjct: 833  TGEGFVMYYKSKENCIVDNIKVCSNDTGNGKFKCVCITMRVPRNPTIGDKFASRHGQKGI 892

Query: 864  CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFA 923
             S+LWP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+A K  +LHG   DATPF 
Sbjct: 893  LSRLWPVEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFI 951

Query: 924  NSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQ 983
             S           E  S ++  GEML+  G+NY+G E LYSG+ G EL  +IFIG VYYQ
Sbjct: 952  FS-----------EENSALEYFGEMLKAAGYNYYGTERLYSGISGLELEADIFIGVVYYQ 1000

Query: 984  RLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHT 1043
            RLRHMVSDKFQVR+TG  D++T QPI GR   GGIRFGEMERD+LLAHG ++LLHDRL  
Sbjct: 1001 RLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFN 1060

Query: 1044 CSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP---KKVTCHACQTSKGMET 1100
            CSD  VA VC  CGS+L+     P           PP+ +    +K  C  C  S  ++T
Sbjct: 1061 CSDRSVAHVCVKCGSLLSPLLEKP-----------PPSWSALRNRKYNCALCNRSDTIDT 1109

Query: 1101 VAMPYVFRYLAAELAAMNIKITLQL 1125
            +++PYVFRY  AELAAMNIK+ L +
Sbjct: 1110 ISLPYVFRYFVAELAAMNIKVKLDI 1134


>gi|426223597|ref|XP_004005961.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 1 [Ovis
            aries]
          Length = 1135

 Score =  898 bits (2320), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/1165 (42%), Positives = 674/1165 (57%), Gaps = 116/1165 (9%)

Query: 12   LRELVRHHIESFDYMLDEGLSEMFD----------------------------------- 36
            L+EL R H+ESF+Y + EGLS                                       
Sbjct: 35   LQELTRAHVESFNYAVSEGLSHAVQAVPPFEFAFKDERISLTIVDAVISPPAVPKGSICK 94

Query: 37   -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
                    CR  + +Y GKL AD+ +        V+++    G  P+M+K++ C+L    
Sbjct: 95   ELNVYPAECRGRRSTYRGKLTADISWSVNGISKGVIKQFL--GYVPIMVKSKLCNLYSLP 152

Query: 90   SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
             + L+   EEA EMGGYFI+NG+E+V R +I+P++N+P++MVR  ++ R  GYT   V +
Sbjct: 153  PKALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMVRPKWKSRGPGYTQYGVSM 212

Query: 150  RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
             CVR++ S+V + L+YL NG+V L F  + + + LP+G  LKALV  +D +IF  L    
Sbjct: 213  HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269

Query: 210  DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
                 KE  +     VS+ ++I++ E      +T+ Q L ++GE F+  ++         
Sbjct: 270  ---KGKEDDSFFRNSVSQMLRIVMEE----GCSTQKQVLNYLGERFRVKLNLPDWYPNEQ 322

Query: 270  VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
             AE +    I +HL  N +KF +L  M +KLF+L     + +NPDSL NQE+L PG L  
Sbjct: 323  AAEFLFNQCICIHLKSNTEKFYVLCLMTRKLFALAKGECMEENPDSLMNQEVLTPGQLFL 382

Query: 330  IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
            ++LKEKLE WL   K  I  + +      +  NL  I  +        +    E +L TG
Sbjct: 383  MFLKEKLEAWLVSIKIAIDKKSQKTNVSLNSENLMKIFSL-----GIDLTKPFEYLLATG 437

Query: 390  RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
             L ++TGL   Q +G  V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGFL
Sbjct: 438  NLRSKTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFL 497

Query: 450  CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
            CPVHTPDGEPCGL+NH+T+ C V +           S    SI  +L  +G+ P     V
Sbjct: 498  CPVHTPDGEPCGLMNHLTAICEVVTQ----------SVYTASIPALLCSLGVTP-----V 542

Query: 510  KSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS- 564
               P    S    VLLDG ++G         +   LR  KV     IP  +EV  +P++ 
Sbjct: 543  DGTPHRPYSECYPVLLDGVMIGWADKEIAPGIADSLRHFKVLREKRIPPWMEVVLIPMTG 602

Query: 565  LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNA 624
                YPGLYLFT+P + VRPV+N+ L  EE     LIG  EQ+FM +   +        A
Sbjct: 603  KPSLYPGLYLFTTPCRLVRPVQNLELGKEE-----LIGTMEQIFMNVAIFED----EVLA 653

Query: 625  FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
               TH+E+ P  MLSV+AN  P+SDHNQSPRNMYQCQM KQTMGF +   + R+D KLY 
Sbjct: 654  GVTTHQELFPHSMLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTFQDRSDNKLYR 713

Query: 685  LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI 744
            LQTPQ+P+VR   Y  Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG  HG +
Sbjct: 714  LQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSV 773

Query: 745  YQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT 804
            Y++E IDLS+   + D       +  D + +   +D DGLP++G  +  G+PY S  +  
Sbjct: 774  YKSEFIDLSEKIKQGDDSLVFGVKAGDPRVMQK-LDDDGLPFIGAQLKYGDPYYSYLNLN 832

Query: 805  TNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGV 863
            T        K  E+  VD + V   ++ N   K   I  R  RNP IGDKF+SRHGQKG+
Sbjct: 833  TGEGFVMYYKSKENCIVDNIKVCSNDTGNGKFKCVCITMRVPRNPTIGDKFASRHGQKGI 892

Query: 864  CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFA 923
             S+LWP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+A K  +LHG   DATPF 
Sbjct: 893  LSRLWPVEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFI 951

Query: 924  NSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQ 983
             S           E  S ++  GEML+  G+NY+G E LYSG+ G EL  +IFIG VYYQ
Sbjct: 952  FS-----------EENSALEYFGEMLKAAGYNYYGTERLYSGISGLELEADIFIGVVYYQ 1000

Query: 984  RLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHT 1043
            RLRHMVSDKFQVR+TG  D++T QPI GR   GGIRFGEMERD+LLAHG ++LLHDRL  
Sbjct: 1001 RLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFN 1060

Query: 1044 CSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP---KKVTCHACQTSKGMET 1100
            CSD  VA VC  CGS+L+     P           PP+ +    +K +C  C  S  ++T
Sbjct: 1061 CSDRSVAHVCVKCGSLLSPLLEKP-----------PPSWSALRNRKYSCALCNRSDTIDT 1109

Query: 1101 VAMPYVFRYLAAELAAMNIKITLQL 1125
            +++PYVFRY  AELAAMNIK+ L +
Sbjct: 1110 ISVPYVFRYFVAELAAMNIKVKLDI 1134


>gi|301781943|ref|XP_002926383.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like isoform 2
            [Ailuropoda melanoleuca]
          Length = 1079

 Score =  897 bits (2319), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/1123 (43%), Positives = 669/1123 (59%), Gaps = 88/1123 (7%)

Query: 12   LRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNF 71
            L+EL R H+ESF+Y + EGLS    H  QA IS+            ++  S  + ++F  
Sbjct: 35   LQELTRAHVESFNYAVREGLS----HAVQADISWA-----------VNGISRGIIKQF-L 78

Query: 72   GQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMV 131
            G  P+M+K++ C+L     + L+   EEA EMGGYFI+NG+E+V R +I+P++N+P++M+
Sbjct: 79   GYVPIMVKSKLCNLHSLPPRALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPVAMI 138

Query: 132  RSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLK 191
            R  ++ R  GYT   V + CVR++ S+V + L+YL NG+V L F  + + + LP+G  LK
Sbjct: 139  RPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALK 198

Query: 192  ALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHI 251
            ALV  +D +IF  L         KE+ +     VS+ ++I++ E      +T+ Q L ++
Sbjct: 199  ALVSFSDYQIFQELI------KGKEEDSFFRNSVSQMLRIVMEE----GCSTQKQVLNYL 248

Query: 252  GEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSD 311
            GE F+  +           AE +    I +HL  N +KF +L  M +KLF+L     + D
Sbjct: 249  GECFRVKLSLPDWYPNEQAAEFLFDQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMED 308

Query: 312  NPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVME 371
            NPDSL NQE+L PG L  ++LKEK+E WL   K  +    +      +  NL  I  +  
Sbjct: 309  NPDSLVNQEVLTPGQLFLMFLKEKMESWLVSIKIALDKRSQKTNVSINTENLMKIFSL-- 366

Query: 372  KNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFA 431
                  +    E +L TG L ++TGL   Q +G  V A++LNF+R++S FR VHRGA FA
Sbjct: 367  ---GTDLTKPFEYLLATGNLRSKTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFA 423

Query: 432  GLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS 491
             +RTT+VR+LLPESWGFLCPVHTPDGEPCGL+NH+T+ C V + +              S
Sbjct: 424  KMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQF----------VYTAS 473

Query: 492  ILRVLIGVGMIPSLPKLVKSGP----PAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVS 547
            +  +L  +G+ P     V   P         VLLDG +VG +       +   LR  KV 
Sbjct: 474  VPALLCSLGVTP-----VDGAPHRPYAECYPVLLDGVMVGWVDKELAPSIADSLRHFKVL 528

Query: 548  AASVIPDDLEVGYVPLS-LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQ 606
                IP  +EV  +P++     YPGL+LFT+P + VRPV+N+ L  EE     LIG  EQ
Sbjct: 529  REKRIPPWMEVALIPMTGKPSLYPGLFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQ 583

Query: 607  VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQT 666
            +FM I   +        A   TH+E+ P  +LSV+AN  P+SDHNQSPRNMYQCQM KQT
Sbjct: 584  IFMNIAIFED----EVLAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQT 639

Query: 667  MGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMED 726
            MGF +   + R+D KLY LQTPQ+P+VR   Y  Y +D YP GTNAIVAV++YTGYDMED
Sbjct: 640  MGFPLLTYQARSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMED 699

Query: 727  AMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPY 786
            AMI+NK+S +RG  HG +Y++E IDLS+   + D       +  D + L   +D DGLP+
Sbjct: 700  AMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDDSLVFGVKPGDPRILQK-LDDDGLPF 758

Query: 787  VGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHT 845
            +G  +  G+PY S  +  T        K  E+  VD + V   ++ +   K   I  R  
Sbjct: 759  IGAQLQYGDPYYSYLNLNTGESFVMYYKSKENCIVDNIKVCSNDTGSGKFKCICITMRVP 818

Query: 846  RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
            RNP IGDKF+SRHGQKG+ S+LWP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+
Sbjct: 819  RNPTIGDKFASRHGQKGILSRLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESM 877

Query: 906  AAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSG 965
            A K  +LHG   DATPF  S           E  S ++  GE+L+  G+N++G E LYSG
Sbjct: 878  AGKSAALHGLCHDATPFTFS-----------EENSALEYFGELLKAAGYNFYGTERLYSG 926

Query: 966  VYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMER 1025
            + G EL  +IFIG VYYQRLRHMVSDKFQVR+TG  D++T QPI GR   GGIRFGEMER
Sbjct: 927  ISGIELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFGEMER 986

Query: 1026 DSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP- 1084
            D+LLAHG ++LLHDRL  CSD  VA VC  CGS+L+     P           PP+ +  
Sbjct: 987  DALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKP-----------PPSWSAM 1035

Query: 1085 --KKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
              +K  C  C  S  ++TV++PYVFRY  AELAAMNIK+ L +
Sbjct: 1036 RNRKYNCTLCDRSDTIDTVSVPYVFRYFVAELAAMNIKVKLDV 1078


>gi|70991741|ref|XP_750719.1| DNA-directed RNA polymerase I subunit beta (Rpa2) [Aspergillus
            fumigatus Af293]
 gi|66848352|gb|EAL88681.1| DNA-directed RNA polymerase I subunit beta (Rpa2), putative
            [Aspergillus fumigatus Af293]
          Length = 1235

 Score =  897 bits (2319), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/1159 (43%), Positives = 692/1159 (59%), Gaps = 124/1159 (10%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPV--VRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
             R+   +Y GKL A +E+Q ++ G  +  +RE    GQ P+ML+T RCHL+ A  Q+LV 
Sbjct: 128  ARERHATYRGKLRARLEYQ-VNNGDWMESIRE---LGQVPIMLRTNRCHLEKATPQELVQ 183

Query: 96   LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
             KEE+ E+GGYFI+NG E++ R +++ K+N+PM++VRSSF  R   YT   + IR VR D
Sbjct: 184  HKEESEELGGYFIVNGNEKLIRMLVVGKRNFPMAIVRSSFVRRGHTYTKFGIQIRSVRPD 243

Query: 156  QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
            Q+S T  L+YL +G+V   F  +  EYL+PV +++KALV+TND EIF  +      K   
Sbjct: 244  QTSQTNVLHYLSDGNVTFRFSWRKNEYLIPVMMIMKALVETNDREIFEGIVGSATSK--- 300

Query: 216  EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
                V +  V++RV+++L   +  +L TR  C  ++GE F+PV+      S        +
Sbjct: 301  ---GVNNTFVTDRVELLLRTYKAYNLHTRSSCRAYLGEKFKPVLGVPADMSNEDAGTEFL 357

Query: 276  RDYIFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
            R  +  HL + N       DKF L++FM++KL++LV      DNPD++ NQEILL G L 
Sbjct: 358  RKIVLPHLGNQNVTEIQDYDKFKLIMFMIRKLYALVAGDCAPDNPDAVSNQEILLGGFLY 417

Query: 329  TIYLKEKLEDWLRKGKKLIQD-EIENNGKKFD--FFNLANIKKVMEKNPSKQIGTSIETM 385
             + LKE+LE+W+R    +++D    N G KF    F    + K++++  ++ IG  +E  
Sbjct: 418  GMILKEQLEEWMRSFGPILRDWSNRNGGAKFTDPAFERDFLSKIVKRT-NENIGGKLEYF 476

Query: 386  LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
            L TG L + TGLDLQQ +GYTV AE++NF RFIS FR +HRG+ FA L+TT+VRKLLPES
Sbjct: 477  LSTGNLVSPTGLDLQQVSGYTVMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPES 536

Query: 446  WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
            WGFLCPVHTPDG PCGLLNH+   C +A+   S  N+    K     L V +GV    S+
Sbjct: 537  WGFLCPVHTPDGAPCGLLNHLAHKCLIAT---SDVNVSHLPK-----LLVQLGVRSESSV 588

Query: 506  PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
              L  S     ++V LDGR+VG     +   +   +R  KVS    IP +LE+GYVP S 
Sbjct: 589  -ALEDS-----VTVQLDGRIVGYCSPKQARMIADTVRHWKVSGTHNIPRELEIGYVPNSN 642

Query: 566  GGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNA 624
            GG YPG+Y+F+   +  RPV+ + L       ++ +GPFEQ FMEI C PD    G    
Sbjct: 643  GGQYPGIYMFSQAARMYRPVKYLPL-----DKLDYVGPFEQPFMEIACLPDDLVAG---- 693

Query: 625  FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
              +TH E  PT +LS+VAN+TP+SD+NQSPRNMYQCQM+KQTMG    A+++R D KLY 
Sbjct: 694  -VSTHIEYTPTNILSIVANMTPFSDYNQSPRNMYQCQMSKQTMGTPSTAIEYRTDNKLYR 752

Query: 685  LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI 744
            LQT QTPIVR   Y  YG+D +P GTNA+VA+++YTGYDM+DAMI+NKSS +RG  +G I
Sbjct: 753  LQTGQTPIVRPPLYNAYGLDNFPNGTNAVVAIISYTGYDMDDAMIINKSSHERGFGYGTI 812

Query: 745  YQTETIDLSDDGNKVDRGQ----KLFRRNKDAK---SLHSVIDSDGLPYVGQMIHPGEPY 797
            Y+T+   L D  ++  + +    KLF      +      + +D DGLP+VG  +  G   
Sbjct: 813  YKTKIHSLDDKDSRRSKSRREITKLFGFAPGGEIRAEWRTTLDEDGLPHVGARVKEGSLI 872

Query: 798  CSI----YDKTTNSW-------RTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHT 845
             +     YD  ++S+            K +E  ++D + +    +   P Q  ++++R  
Sbjct: 873  AAWHTVRYDAASDSYVNVDGITHFVKYKDAEEGYIDSIRIMGAETGLEPCQALSVKYRIP 932

Query: 846  RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
            R P+IGDKFSSRHGQKGVCSQLWP +DMPFS  +G++PDLIINPHAFPSRMTIA ++ES+
Sbjct: 933  RKPVIGDKFSSRHGQKGVCSQLWPAVDMPFSE-SGIQPDLIINPHAFPSRMTIAQMIESM 991

Query: 906  AAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSG 965
            A K G+LHG   D+TPF  S           E  +  D  G+ LR  G+NY+G E LYSG
Sbjct: 992  AGKAGALHGHPQDSTPFQFS-----------EENTAADYFGQQLRKAGYNYYGNEPLYSG 1040

Query: 966  VYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMER 1025
            + G E   +IFIG V+YQRLRHMV+DKFQVR+TG ++Q+T QP+KGR +GGGIR GEMER
Sbjct: 1041 ITGKEFAADIFIGVVHYQRLRHMVNDKFQVRTTGPVNQLTGQPVKGRAKGGGIRVGEMER 1100

Query: 1026 DSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGG-------- 1077
            DSL+AHGAA++L DRL  CSD   A +C  CGS L+         A+   G         
Sbjct: 1101 DSLIAHGAAFILQDRLMNCSDSQRAWICRDCGSFLSTQV------AVSSAGSSKARLAAS 1154

Query: 1078 ---------LPPARAPKKVTCHACQTSKGME----------------------TVAMPYV 1106
                        + AP  V C  C      E                       VA+P V
Sbjct: 1155 AAAAAKNAFAQQSGAPGIVRCRRCAREAVFEDSRAVVWEDGDGRRYVGGDNVTIVAVPGV 1214

Query: 1107 FRYLAAELAAMNIKITLQL 1125
             RYL  ELAAM I++   +
Sbjct: 1215 LRYLDVELAAMGIRMKFWV 1233


>gi|119469451|ref|XP_001257945.1| DNA-directed RNA polymerase I subunit beta (Rpa2), putative
            [Neosartorya fischeri NRRL 181]
 gi|119406097|gb|EAW16048.1| DNA-directed RNA polymerase I subunit beta (Rpa2), putative
            [Neosartorya fischeri NRRL 181]
          Length = 1232

 Score =  897 bits (2318), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/1157 (43%), Positives = 690/1157 (59%), Gaps = 123/1157 (10%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPV--VRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
             R+   +Y GKL A +E+Q ++ G  +  +RE    GQ P+ML+T RCHL+ A  Q+LV 
Sbjct: 128  ARERHATYRGKLRARLEYQ-VNNGDWMESIRE---LGQVPIMLRTNRCHLEKATPQELVQ 183

Query: 96   LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
             KEE+ E+GGYFI+NG E++ R +++ K+NYPM++VR SF  R   YT   + IR VR D
Sbjct: 184  HKEESEELGGYFIVNGNEKLIRMLVVGKRNYPMAIVRGSFVRRGHTYTKFGIQIRSVRPD 243

Query: 156  QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
            Q+S T  L+YL +G+V   F  +  EYL+PV +++K LV+TND EIF  +      K   
Sbjct: 244  QTSQTNVLHYLSDGNVTFRFSWRKNEYLIPVMMIMKGLVETNDREIFEGIVGSATSK--- 300

Query: 216  EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
                V +  V++RV+++L   +  +L TR  C  ++GE F+PV+      S        +
Sbjct: 301  ---GVNNTFVTDRVELLLRTYKAYNLHTRSSCRAYLGEKFKPVLGVPADMSNEDAGTEFL 357

Query: 276  RDYIFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
            R  +  HL + N       DKF L++FM++KL++LV      DNPD++ NQEILL G L 
Sbjct: 358  RKIVLPHLGNQNVTETQDYDKFKLIMFMIRKLYALVAGDCAPDNPDAVSNQEILLGGFLY 417

Query: 329  TIYLKEKLEDWLRKGKKLIQD-EIENNGKKFD--FFNLANIKKVMEKNPSKQIGTSIETM 385
             + LKE+LE+W+R    +++D    N G KF    F    + K++++  ++ IG  +E  
Sbjct: 418  GMILKEQLEEWMRSFGPILRDWSNRNGGAKFTDPAFERDFLSKIVKRT-NENIGGKLEYF 476

Query: 386  LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
            L TG L + TGLDLQQ +GYTV AE++NF RFIS FR +HRG+ FA L+TT+VRKLLPES
Sbjct: 477  LSTGNLVSPTGLDLQQVSGYTVMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPES 536

Query: 446  WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
            WGFLCPVHTPDG PCGLLNH+   C +A+   S  N+    K     L V +GV    S+
Sbjct: 537  WGFLCPVHTPDGAPCGLLNHLAHKCLIAT---SDVNVSHLPK-----LLVQLGVRSESSV 588

Query: 506  PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
              L  S     ++V LDGR+VG     +   +   +R  KVS    IP +LE+GYVP S 
Sbjct: 589  -ALEDS-----VTVQLDGRIVGYCSPKQARMIADTVRHWKVSGTHNIPRELEIGYVPNSN 642

Query: 566  GGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNA 624
            GG YPG+Y+F+   +  RPV+ + L       ++ +GPFEQ FMEI C PD    G    
Sbjct: 643  GGQYPGVYMFSQAARMYRPVKYLPL-----DKLDYVGPFEQPFMEIACLPDDLVAG---- 693

Query: 625  FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
              +TH E  PT +LS+VAN+TP+SD+NQSPRNMYQCQM+KQTMG    A+++R D KLY 
Sbjct: 694  -VSTHIEFTPTNILSIVANMTPFSDYNQSPRNMYQCQMSKQTMGTPGTAIEYRTDNKLYR 752

Query: 685  LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI 744
            LQT QTPIVR   Y  YG+D +P GTNA+VA+++YTGYDM+DAMI+NKSS +RG  +G I
Sbjct: 753  LQTGQTPIVRPPLYNAYGLDNFPNGTNAVVAIISYTGYDMDDAMIINKSSHERGFGYGTI 812

Query: 745  YQTETIDLSDDGNKVDRGQ----KLFRRNKDAK---SLHSVIDSDGLPYVGQMIHPGEPY 797
            Y+T+   L D  ++  + +    KLF      +      + +D DGLP+VG  +  G   
Sbjct: 813  YKTKIHSLDDKDSRRSKSRREITKLFGFAPGGEIRAEWRTTLDEDGLPHVGARVKEGSLI 872

Query: 798  CSI----YDKTTNSW-------RTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHT 845
             +     YD  ++S+            K +E  ++D + +    +   P Q  ++++R  
Sbjct: 873  AAWHTVRYDAASDSYVNVDGITHFVKYKDAEEGYIDSIRIMGAETGLEPCQALSVKYRIP 932

Query: 846  RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
            R P+IGDKFSSRHGQKGVCSQLWP +DMPFS  +G++PDLIINPHAFPSRMTIA ++ES+
Sbjct: 933  RKPVIGDKFSSRHGQKGVCSQLWPAVDMPFS-ESGIQPDLIINPHAFPSRMTIAQMIESM 991

Query: 906  AAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSG 965
            A K G+LHG   D+TPF  S           E  +  D  G+ LR  G+NY+G E LYSG
Sbjct: 992  AGKAGALHGHPQDSTPFQFS-----------EENTAADYFGQQLRKAGYNYYGNEPLYSG 1040

Query: 966  VYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMER 1025
            V G E   +IFIG V+YQRLRHMV+DKFQVR+TG ++Q+T QP+KGR +GGGIR GEMER
Sbjct: 1041 VTGKEFAADIFIGVVHYQRLRHMVNDKFQVRTTGPVNQLTGQPVKGRAKGGGIRVGEMER 1100

Query: 1026 DSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPAR--- 1082
            DSL+AHGAA++L DRL  CSD   A +C  CGS L+        +      G   AR   
Sbjct: 1101 DSLIAHGAAFILQDRLMNCSDSQRAWICRDCGSFLST-------QVAVSSAGSSKARLAA 1153

Query: 1083 ------------APKKVTCHACQTSKGME----------------------TVAMPYVFR 1108
                        AP  V C  C      E                       VA+P V R
Sbjct: 1154 SAAKNAFAQQSGAPGIVRCRRCAREAVFEDSRAIVWEDGDGRRYVGGDNVTIVAVPGVLR 1213

Query: 1109 YLAAELAAMNIKITLQL 1125
            YL  ELAAM I++   +
Sbjct: 1214 YLDVELAAMGIRMKFWV 1230


>gi|121699292|ref|XP_001267972.1| DNA-directed RNA polymerase I subunit beta (Rpa2), putative
            [Aspergillus clavatus NRRL 1]
 gi|119396114|gb|EAW06546.1| DNA-directed RNA polymerase I subunit beta (Rpa2), putative
            [Aspergillus clavatus NRRL 1]
          Length = 1234

 Score =  897 bits (2318), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/1153 (43%), Positives = 691/1153 (59%), Gaps = 113/1153 (9%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPV--VRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
             R+   +Y GKL A +E+Q ++ G  +  +RE    GQ P+ML+T RCHL+ A  ++LV 
Sbjct: 128  ARERHATYRGKLRARLEYQ-VNNGDWMESIRE---LGQVPIMLRTNRCHLEKATPEELVQ 183

Query: 96   LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
             KEE+ E+GGYFI+NG E++ R +++ K+N+PM++VR+SF  R   YT   + IR VR D
Sbjct: 184  HKEESEELGGYFIVNGNEKLIRMLVVGKRNFPMAIVRNSFVRRGHTYTKYGIQIRSVRPD 243

Query: 156  QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
            Q+S T  L+YL +G+V   F  +  EYL+P  ++LKALV+TND EIF  +      K   
Sbjct: 244  QTSQTNVLHYLSDGNVTFRFSWRKSEYLVPAMMILKALVETNDREIFEGIVGSASSK--- 300

Query: 216  EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
                V +  V++RV+++L   +  +L +R  C  ++GE F+PV+      S        +
Sbjct: 301  ---GVSNTFVTDRVELLLRTYKGYNLHSRSSCRAYLGEKFKPVLGVPADMSNEDAGTEFL 357

Query: 276  RDYIFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
            R  +  HL + N       DKF L++FM++KL++LV      DNPD++ NQEILL G L 
Sbjct: 358  RKVVLPHLGNQNVTGTQDYDKFKLVMFMIRKLYALVAGDCAPDNPDAVSNQEILLGGFLY 417

Query: 329  TIYLKEKLEDWLRKGKKLIQD-EIENNGKKFD--FFNLANIKKVMEKNPSKQIGTSIETM 385
             + LKE+LE+W+R    +++D    N+G KF    F    + +V+ +  ++ IG ++E  
Sbjct: 418  GMILKERLEEWVRSFGPILRDWSNRNSGAKFTDPAFERDFLSRVVRRT-NENIGGALEYF 476

Query: 386  LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
            L TG L + TGLDLQQ +GYTV AE++NF RFIS FR +HRG+ FA L+TT+VRKLLPES
Sbjct: 477  LSTGNLVSPTGLDLQQTSGYTVMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPES 536

Query: 446  WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
            WGF CPVHTPDG PCGLLNH+   C +++   S  N+    K     L V +GV    S+
Sbjct: 537  WGFFCPVHTPDGAPCGLLNHLAHKCFIST---SDVNVSQLPK-----LLVQLGVRSESSV 588

Query: 506  PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
                        +V LDGR++G     +  ++   +R  KV   + IP +LE+GYVP S 
Sbjct: 589  SLEESV------TVQLDGRIIGYCSPKQARQIADTVRHWKVQGTNNIPRELEIGYVPNSN 642

Query: 566  GGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNA 624
            GG YPG+Y+F+   +  RPV+ + L       ++ +GPFEQ FMEI C PD    G    
Sbjct: 643  GGQYPGVYMFSQAARMYRPVKYLPL-----DKLDYVGPFEQPFMEIACLPDDLVAG---- 693

Query: 625  FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
              +TH E  PT +LS+VAN+TP+SD+NQSPRNMYQCQM+KQTMG    A+++R D KLY 
Sbjct: 694  -VSTHIEFTPTNILSIVANMTPFSDYNQSPRNMYQCQMSKQTMGTPGTAIQYRTDNKLYR 752

Query: 685  LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI 744
            LQT QTPIVR   Y  YG+D +P GTNA+VA+++YTGYDM+DAMI+NKSS +RG  HG I
Sbjct: 753  LQTGQTPIVRPPLYNAYGLDNFPNGTNAVVAIISYTGYDMDDAMIINKSSHERGFGHGTI 812

Query: 745  YQTETIDLSDDGNKVDRGQ----KLFRRNKDAK---SLHSVIDSDGLPYVGQMIHPGEPY 797
            Y+T+   L D  ++  + +    KLF      +      + +D DGLP+VG  +  G   
Sbjct: 813  YKTKIHSLDDKDSRRSKSRREITKLFGFAPGGEIRAEWRTTLDEDGLPHVGARVKEGSLV 872

Query: 798  CSI----YDKTTNSW-------RTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHT 845
             +     YD +++S+            K +E  ++D + +    +   P Q  ++++R  
Sbjct: 873  AAWHTVRYDASSDSYVNVDGITHFVKYKDAEEGYIDSIRIMGAETGLEPCQALSVKYRVP 932

Query: 846  RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
            R PIIGDKFSSRHGQKGVCSQLWP +DMPFS  +G++PDLIINPHAFPSRMTIA ++ES+
Sbjct: 933  RKPIIGDKFSSRHGQKGVCSQLWPAVDMPFS-ESGIQPDLIINPHAFPSRMTIAQMIESM 991

Query: 906  AAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSG 965
            A K G+LHG   D+TPF  S           E  +  D  G+ LR  G+NY+G E LYSG
Sbjct: 992  AGKAGALHGHPQDSTPFQFS-----------EENTAADYFGQQLRKAGYNYYGNEPLYSG 1040

Query: 966  VYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMER 1025
            + G E   +IFIG V+YQRLRHMV+DKFQVR+TG ++ +T QP+KGR +GGGIR GEMER
Sbjct: 1041 ITGKEFAADIFIGVVHYQRLRHMVNDKFQVRTTGPVNPLTAQPVKGRAKGGGIRVGEMER 1100

Query: 1026 DSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATF-----------IHPQKRAIRE 1074
            DSL+AHGAA++L DRL  CSD   A +C  CGS L+              I   K A  +
Sbjct: 1101 DSLIAHGAAFILQDRLMNCSDSQRAWICRDCGSFLSTQVAVSSAGSSKARIAATKNASSQ 1160

Query: 1075 IGGLPPARAPKKVTCHACQTSKGME----------------------TVAMPYVFRYLAA 1112
              G P   A   V C  C      E                       VA+P V RYL  
Sbjct: 1161 HSGAPGG-ASGIVRCRRCAREAVFEDSRAIVWEDGDGRRYVGGDNVTVVAVPGVLRYLDV 1219

Query: 1113 ELAAMNIKITLQL 1125
            ELAAM I++  ++
Sbjct: 1220 ELAAMGIRMKFRV 1232


>gi|401882641|gb|EJT46891.1| DNA-directed RNA polymerase i polypeptide 2 [Trichosporon asahii var.
            asahii CBS 2479]
          Length = 1197

 Score =  897 bits (2317), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/1121 (43%), Positives = 686/1121 (61%), Gaps = 84/1121 (7%)

Query: 39   RQAKISYTGKLMADVEFQYLDAG-----SPVVRERFNFGQFPVMLKTRRCHLQGADSQKL 93
            R+   +Y  +L   ++++   A      S  VRE    G  P+M+K+ RC+++G  + +L
Sbjct: 128  RERLTTYRSRLTVTIKWKVTTADGTTRESEEVRE---CGMLPIMVKSARCNIRGMPAAEL 184

Query: 94   VSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVR 153
            V   EE++  GGYFI+NG E++ R +ILP++++P+++ R SF  R   YT     IRCVR
Sbjct: 185  VKHGEESSSWGGYFIINGNEKLVRYLILPRRHHPINLYRPSFAKRGVSYTPYGCQIRCVR 244

Query: 154  KDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKY 213
             DQS+ T  ++YL NG   L F  +  EY++P+ ++LKALVD +DLEIF  L        
Sbjct: 245  PDQSACTNTIHYLSNGGATLRFAWRKVEYMIPLVLILKALVDASDLEIFEGLV------- 297

Query: 214  KKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAET 273
               +G   +  +++RV+++L   +  +L T  QCL ++G+ F+ V++     +   V   
Sbjct: 298  ---QGEYDNTFLTDRVELLLRGQKSWNLQTGTQCLDYLGDKFRVVMNCPDDWTNVQVGSY 354

Query: 274  VIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLK 333
            +++  + VHL    +KF +L+FML+KL+S+V  TS  DNPDS Q+ E+LLPG L  I +K
Sbjct: 355  LLKKVVLVHLPQPREKFRMLLFMLRKLYSMVAGTSCPDNPDSPQHHEVLLPGFLYAIIIK 414

Query: 334  EKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLAT 393
            E+ ++ L   K  I  ++   G+   F +      V+ K  +  +G+ +   L TG L +
Sbjct: 415  ERFDESLNAVKAQINMDMRQ-GRAKSFDDPKYFPSVLTKV-NFDVGSKLSYFLATGNLVS 472

Query: 394  QTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVH 453
             TGLDLQQ +G+TV AE+LNF R++S FR +HRGA FA L+TT+VRKLLPESWGFLCPVH
Sbjct: 473  PTGLDLQQTSGFTVVAEKLNFYRYLSHFRCIHRGAFFAELKTTAVRKLLPESWGFLCPVH 532

Query: 454  TPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGP 513
            TPDG PCGLLNH++ TC++           D SK    I ++L   GM       +    
Sbjct: 533  TPDGSPCGLLNHLSHTCQIVV------KPLDTSK----IPQLLSAHGMTQVFATGIDGRT 582

Query: 514  PAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLY 573
              V  V LDGRV+G    ++ +++   LR+LK    + +P DLEVGYVP++ GG YPGLY
Sbjct: 583  NVV--VQLDGRVIGWASPTKAKELADLLRKLKTEGDARVPLDLEVGYVPVTKGGQYPGLY 640

Query: 574  LFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEEI 632
            LF S  + +RPV  +     E+  ++ +G FEQV+M+I   P+  + G      +TH E+
Sbjct: 641  LFGSRSRMMRPVTYL-----ENDKMDHVGTFEQVYMDIAIKPEEVEKGV-----STHVEL 690

Query: 633  HPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPI 692
             PT MLSV+ANLTP+SD NQSPRNMYQCQM KQTMG    AL+ R D K Y +Q PQTPI
Sbjct: 691  DPTSMLSVLANLTPFSDFNQSPRNMYQCQMGKQTMGTPSTALQHRTDNKFYRIQNPQTPI 750

Query: 693  VRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDL 752
            VR + +  YG D++P  TNAI+AV++YTGYDMEDAMILNKSS +RG  +G +Y+ +  DL
Sbjct: 751  VRPSLHNDYGFDDFPNATNAILAVISYTGYDMEDAMILNKSSHERGFGYGTVYKADIFDL 810

Query: 753  SDDGNKVDRGQKL-FRRNKDAK---SLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSW 808
             D          L F   +D K        +D DGLP +G  +  G+P C+  D TT   
Sbjct: 811  KDAARSRTAAPTLHFGLGRDVKPDSPWRQFLDQDGLPQLGTRVKSGDPLCAYIDDTTGRT 870

Query: 809  RTNSRKGSESVFVDYVAV---DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCS 865
            + +  KG E+ ++D V V   D+ +S+   QK +I+ R  R+P+IGDKFSSRHGQKGVCS
Sbjct: 871  KVHKYKGDETAYIDEVRVLGSDLGDSEL--QKIHIKLRIPRSPVIGDKFSSRHGQKGVCS 928

Query: 866  QLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANS 925
              + DIDMPFS  +GMRPD+IINPHAFPSRMTI M +E +AAK G++HG+  DATPF  S
Sbjct: 929  VKFKDIDMPFSE-SGMRPDVIINPHAFPSRMTIGMFVEMLAAKAGAVHGQCQDATPFKFS 987

Query: 926  VKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRL 985
                       +++  V+  GE LR  G+NYHG E +YSGV G E+  +IF+ P  YQRL
Sbjct: 988  -----------DAEGPVEFFGEQLRKAGYNYHGNEPMYSGVTGEEMRADIFLAPCAYQRL 1036

Query: 986  RHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCS 1045
            RH V+DK+Q RSTG +D +TRQP+KGRKR GGIRFGEMERD+L+AHG ++LL DRL  CS
Sbjct: 1037 RHQVNDKYQARSTGPVDPLTRQPVKGRKRAGGIRFGEMERDALIAHGTSFLLQDRLMNCS 1096

Query: 1046 DYHVADVCSLCGSVLTATF---IHPQKRAI-----------REIGGLPPARAPKKV---- 1087
            DY  A VC  CGS+++  F   + P                 + G L  A   K V    
Sbjct: 1097 DYSTAWVCRGCGSLISLGFDDSVGPTNDGRPRQYCRICERNEQPGALDGAVQDKSVGVVA 1156

Query: 1088 --TCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLG 1126
                 A   S  M+ +A+PYVFRYL AE+A M I++ + + 
Sbjct: 1157 KRESTATAASSKMDVIAVPYVFRYLCAEMACMGIRLNVSVA 1197


>gi|374106178|gb|AEY95088.1| FABR029Wp [Ashbya gossypii FDAG1]
          Length = 1196

 Score =  897 bits (2317), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/1123 (44%), Positives = 691/1123 (61%), Gaps = 92/1123 (8%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
             R+   +Y GKL+  + +   D G     E  + G  PVML++ RCHL     Q+LV  K
Sbjct: 120  ARKRLTTYRGKLLLKLNWSVND-GEETFSEVRDCGPLPVMLQSNRCHLHKMSPQELVEHK 178

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EE+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R   Y+   V IRCVR DQ+
Sbjct: 179  EESDELGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFANRGTSYSHYGVQIRCVRPDQT 238

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            S T  L+YL +G V   F  +  EYL+PV ++LKAL D +D EIF+ +            
Sbjct: 239  SQTNVLHYLNDGQVTFRFSWRKNEYLVPVVLILKALTDASDREIFDGIV----------- 287

Query: 218  GA-VGSPLVSERVKIILAEVQDL--SLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETV 274
            GA   +  +++R++++L   +     L  R Q LQ++G+ F+ V+      S Y V + +
Sbjct: 288  GADTSNSFLTDRLELLLRGFKKRFPQLLNRRQVLQYLGDKFRVVLQASPDMSDYLVGQEL 347

Query: 275  IRDYIFVHLND-NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLK 333
            +R  + VHL D N DK N+L+FM++KL+SLV      DNPD+ Q+QE+LL G L  + +K
Sbjct: 348  LRRIVLVHLGDENTDKSNMLMFMIRKLYSLVAGECCPDNPDATQHQEVLLGGFLYGMIVK 407

Query: 334  EKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLAT 393
            EK+E++L+  K  IQ ++ N G   DF +   + +V+ +  ++ IG+ ++  L TG L +
Sbjct: 408  EKIEEYLQNIKLQIQADV-NRGMPVDFKDRKYMTRVLTR-INENIGSKLQYFLSTGNLVS 465

Query: 394  QTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVH 453
            Q+GLDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPVH
Sbjct: 466  QSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVH 525

Query: 454  TPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGP 513
            TPDG PCGLLNH    C++++         D SK+ T    +L  +G+ P+    V +  
Sbjct: 526  TPDGSPCGLLNHFAHKCKIST------TQSDVSKIPT----LLYSLGVSPA--AHVTAAG 573

Query: 514  PAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV-IPDDLEVGYVPLSLGGAYPGL 572
            P++  V LDG++VG     +   V   LR  KV   +  +P DLE+GYVP S  G YPGL
Sbjct: 574  PSLCCVQLDGKIVGWCSHEQGRIVADTLRYWKVEGKTDGLPLDLEIGYVPASKRGQYPGL 633

Query: 573  YLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEI 632
            YLF    + +RPVR + L  ++     ++GPFEQV+M+I      +  + N    TH E 
Sbjct: 634  YLFGGHSRMMRPVRYLPLDKQD-----IVGPFEQVYMDIAVTP--EEIQNNVH--THVEF 684

Query: 633  HPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPI 692
             PT +LS++ANLTP+SD NQSPRNMYQCQM KQTMG    AL  R+D KLY LQ+ QTPI
Sbjct: 685  SPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQSGQTPI 744

Query: 693  VRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDL 752
            V+ N Y  YG+D +P GTNA+VAV++YTGYDM+DAMI+NKS+ +RG  +G +Y+TE IDL
Sbjct: 745  VKANLYDDYGMDNFPNGTNAVVAVISYTGYDMDDAMIINKSADERGFSYGTVYKTEKIDL 804

Query: 753  SDDGNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRT 810
            S    + D   + F    D   K     +D DGLP +G  +  G+P C+ +D T N  + 
Sbjct: 805  SLSRGRGDPVTQHFGFGTDEWPKEWLEKLDEDGLPIIGSYVEEGDPICAYFDDTLNKTKI 864

Query: 811  NSRKGSESVFVDYVAV--DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLW 868
             +   SE  +++ V +  D  N     Q   I++R  R P IGDKFSSRHGQKGVCS+ W
Sbjct: 865  KTYHSSEPAYIEEVTLIGDESNKFQELQYITIKYRIRRVPQIGDKFSSRHGQKGVCSRKW 924

Query: 869  PDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKK 928
            P +DMPFS  TG++PD+IINPHAFPSRMTI M +ES+A K G+LHG   DATP+  S   
Sbjct: 925  PTVDMPFSE-TGIQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDATPWTFS--- 980

Query: 929  TNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHM 988
                    E  +  D  G+ L   G+NYHG E +YSG  G EL  +I+IG VYYQRLRHM
Sbjct: 981  --------EEDTPADYFGDQLLKAGYNYHGNEPMYSGATGEELRADIYIGVVYYQRLRHM 1032

Query: 989  VSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYH 1048
            V+DKFQVRSTG ++ +T QP+KGRKR GGIR GEMERD+L+ HG ++LL DRL   SDY 
Sbjct: 1033 VNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIGHGTSFLLQDRLLNASDYT 1092

Query: 1049 VADVCSLCGSVLTATFIHPQKRAIREIGGLPPAR----------APKKVT---------- 1088
             + VC  CGS+LT       + ++ +IG +   R          A K +T          
Sbjct: 1093 QSAVCRECGSILTT------QSSVPKIGSMVTIRCRRCAISFDEAKKIITQQDSEDSIFI 1146

Query: 1089 --CHACQTSKGME--------TVAMPYVFRYLAAELAAMNIKI 1121
               H  +  +G +        TVA+P+V +YL +ELAAM I++
Sbjct: 1147 DDSHIWEDGQGNKFVGGGNTTTVAIPFVLKYLDSELAAMGIRL 1189


>gi|291386319|ref|XP_002709637.1| PREDICTED: RNA polymerase I polypeptide B isoform 1 [Oryctolagus
            cuniculus]
          Length = 1135

 Score =  897 bits (2317), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/1166 (42%), Positives = 669/1166 (57%), Gaps = 118/1166 (10%)

Query: 12   LRELVRHHIESFDYMLDEGLSEMFD----------------------------------- 36
            L+EL R H+ESF+Y + EGL                                        
Sbjct: 35   LQELTRAHVESFNYAVREGLGHAVQAIAPFEFAFKDERITLTIVDAVISPPTVPKGTICR 94

Query: 37   -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
                    CR  + +Y GKL AD+ +        V+++    G  P+M+K++ C+L    
Sbjct: 95   EFNVYPAECRGRRSTYRGKLTADISWAVNGTSKGVIKQFL--GHVPIMVKSKLCNLYNLS 152

Query: 90   SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
             Q L+   EEA EMGGYFI+NG+E+V R +I+P++N+P++MVR  +R R  GYT   V +
Sbjct: 153  PQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMVRPKWRSRGPGYTQYGVSM 212

Query: 150  RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
             CVR++ S+V + L+YL NG+V L F  + + + LP+G  LKALV  +D +IF  L    
Sbjct: 213  HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269

Query: 210  DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
                   KG          V  +L  V +    T+ Q L ++GE F+  ++         
Sbjct: 270  -------KGKEADSFFRNSVSQMLRIVAEEGCFTQKQVLNYLGECFRVKLNLPDWYPNEQ 322

Query: 270  VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
             AE +    I +HL  N +KF LL  M +KLF+L     + +NPDSL NQE+L PG L  
Sbjct: 323  AAEFLFNQCICIHLKSNTEKFYLLCLMTRKLFALAKGECMEENPDSLVNQEVLTPGQLFL 382

Query: 330  IYLKEKLEDWLRKGKKLIQDEIENNGKKFDF-FNLANIKKVMEKNPSKQIGTSIETMLKT 388
            ++LKEK+E WL      I+  ++   +K +   N  N+ KV        +    E +L T
Sbjct: 383  MFLKEKMEAWLTS----IKIALDKKAQKTNISINTENLLKVFSM--GADLTRPFEYLLAT 436

Query: 389  GRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGF 448
            G L ++TGL   Q +G  V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGF
Sbjct: 437  GNLRSKTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGF 496

Query: 449  LCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKL 508
            LCPVHTPDGEPCGL+NH+T+ C V + +             TSI  +L  +G+ P     
Sbjct: 497  LCPVHTPDGEPCGLMNHLTAICEVVTQF----------VYTTSIPPLLCSLGVTP----- 541

Query: 509  VKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS 564
            +   P    S    VLLDG +VG +       +   LR  KV     IP  +EV  VP++
Sbjct: 542  IDGAPHRPYSECYPVLLDGVMVGWVDKELAPGIADSLRLFKVLREKRIPPWMEVALVPMT 601

Query: 565  -LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRN 623
                 YPGLYLFT+P + VRPV+N+ L  EE     LIG  EQ+F+ +   +        
Sbjct: 602  GKPSLYPGLYLFTTPCRLVRPVQNLELGKEE-----LIGTMEQLFLNVAIFED----EVL 652

Query: 624  AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
            A   TH+E+ P  MLSV+AN  P+SDHNQSPRNMYQCQM KQTMGF +   + R+D KLY
Sbjct: 653  AGVTTHQELFPHSMLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLY 712

Query: 684  HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
             LQTPQ+P+VR   Y  Y +D YP GTNAIVAV +YTGYDMEDAMI+NK+S +RG  HG 
Sbjct: 713  RLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVTSYTGYDMEDAMIVNKASWERGFAHGS 772

Query: 744  IYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDK 803
            +Y+TE IDLS+   + D       +  D + L   +D DGLP++G  +  G+PY    + 
Sbjct: 773  VYKTEFIDLSEKIKQGDDSLVFGVKPGDPRILQR-LDDDGLPFIGTKLQYGDPYYGYLNL 831

Query: 804  TTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKG 862
             T        K  E+  VD + V   ++ +   K   I  R  RNP IGDKF+SRHGQKG
Sbjct: 832  NTGESFVVYYKSKENCIVDNIKVCSNDTGSGKFKCICITMRVPRNPTIGDKFASRHGQKG 891

Query: 863  VCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPF 922
            + S+LWP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+A K  +LHG   DATPF
Sbjct: 892  ILSRLWPVEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPF 950

Query: 923  ANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYY 982
              S           E  S +D  GEML+  G+N++G E LYSG+ G EL  +IFIG VYY
Sbjct: 951  TFS-----------EQNSALDHFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYY 999

Query: 983  QRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLH 1042
            QRLRHMVSDKFQVR+TG  D++T QPI GR   GGIRFGEMERD+LLAHG ++LLHDRL 
Sbjct: 1000 QRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLF 1059

Query: 1043 TCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP---KKVTCHACQTSKGME 1099
             CSD  +A VC  CGS+L+     P           PP+ +    +K  C  C  S  ++
Sbjct: 1060 NCSDRSIAHVCVECGSLLSPLLEKP-----------PPSWSAMRNRKYNCTLCNRSDTID 1108

Query: 1100 TVAMPYVFRYLAAELAAMNIKITLQL 1125
            TV++PYVFRY  AELAAMNIK+ L +
Sbjct: 1109 TVSVPYVFRYFVAELAAMNIKVKLDV 1134


>gi|332257258|ref|XP_003277726.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 2
            [Nomascus leucogenys]
          Length = 1079

 Score =  897 bits (2317), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1123 (43%), Positives = 670/1123 (59%), Gaps = 88/1123 (7%)

Query: 12   LRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNF 71
            L+EL R H+ESF+Y + EGL        QA I++            ++  S  + ++F  
Sbjct: 35   LQELTRAHVESFNYAVHEGLGLAV----QADINWA-----------VNGISKGIIKQF-L 78

Query: 72   GQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMV 131
            G  P+M+K++ C+L     Q L+   EEA EMGGYFI+NG+E+V R +I+P++N+P++M+
Sbjct: 79   GYVPIMVKSKLCNLHNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMI 138

Query: 132  RSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLK 191
            R  ++ R  GYT   V + CVR++ S+V + L+YL NG+V L F  + + + LP+G  LK
Sbjct: 139  RPKWKTRGPGYTQYGVSVHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALK 198

Query: 192  ALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHI 251
            ALV  +D +IF  L         KE  +     VS+ ++I++ E      +T+ Q L ++
Sbjct: 199  ALVSFSDYQIFQELI------KGKEDDSFLRNSVSQMLRIVMEE----GCSTQKQVLNYL 248

Query: 252  GEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSD 311
            GE F+  ++          AE +    I +HL  N +KF +L  M +KLF+L     + D
Sbjct: 249  GECFRVKLNVPDWYPNEQAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMED 308

Query: 312  NPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVME 371
            NPDSL NQE+L PG L  ++LKEKLE WL   K     + +      +  NL  I  +  
Sbjct: 309  NPDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTNVSMNTDNLMRIFTM-- 366

Query: 372  KNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFA 431
                  +    E +  TG L ++TGL L Q +G  V A++LNF+R++S FR VHRGA FA
Sbjct: 367  ---GIDLTKPFEYLFATGNLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFA 423

Query: 432  GLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS 491
             +RTT+VR+LLPESWGFLCPVHTPDGEPCGL+NH+T+ C V + +              S
Sbjct: 424  KMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQF----------VYTAS 473

Query: 492  ILRVLIGVGMIPSLPKLVKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVS 547
            I  +L  +G+ P     V   P    S    VLLDG +VG +       +   LRR KV 
Sbjct: 474  IPALLCNLGVTP-----VDGAPHRPYSECYPVLLDGVMVGWVDKEIAPGIADSLRRFKVL 528

Query: 548  AASVIPDDLEVGYVPLS-LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQ 606
                IP  +EV  +P++     YPGL+LFT+P + VRPV+N+ +  EE     LIG  EQ
Sbjct: 529  REKRIPPWMEVVLIPMTGKPSLYPGLFLFTTPCRLVRPVQNLEMGKEE-----LIGTMEQ 583

Query: 607  VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQT 666
            +FM +   +        A   TH+E+ P  +LSV+AN  P+SDHNQSPRNMYQCQM KQT
Sbjct: 584  IFMNVAIFED----EVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQT 639

Query: 667  MGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMED 726
            MGF +   + R+D KLY LQTPQ+P+VR + Y  Y +D YP GTNAIVAV++YTGYDMED
Sbjct: 640  MGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMED 699

Query: 727  AMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPY 786
            AMI+NK+S +RG  HG +Y++E IDLS+   + D       +  D + L   +D DGLP+
Sbjct: 700  AMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQK-LDDDGLPF 758

Query: 787  VGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHT 845
            +G  +  G+PY S  +  T        K  E+  VD + V   ++ +   K   I  R  
Sbjct: 759  IGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVP 818

Query: 846  RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
            RNP IGDKF+SRHGQKG+ S+LWP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+
Sbjct: 819  RNPTIGDKFASRHGQKGILSRLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESM 877

Query: 906  AAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSG 965
            A K  +LHG   DATPF  S           E  S ++  GEML+  G+N+HG E LYSG
Sbjct: 878  AGKSAALHGLCHDATPFIFS-----------EENSALEYFGEMLKAAGYNFHGTERLYSG 926

Query: 966  VYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMER 1025
            + G EL  +IFIG VYYQRLRHMVSDKFQVR+TG  D++T QPI GR   GGIRFGEMER
Sbjct: 927  ISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMER 986

Query: 1026 DSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP- 1084
            D+LLAHG ++LLHDRL  CSD  VA VC  CGS+L+     P           PP+ +  
Sbjct: 987  DALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKP-----------PPSWSAM 1035

Query: 1085 --KKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
              +K  C  C  S  ++TV++PYVFRY  AELAAMNIK+ L +
Sbjct: 1036 RNRKYNCTLCNRSDTIDTVSVPYVFRYFVAELAAMNIKVKLDV 1078


>gi|410955302|ref|XP_003984295.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 2
            [Felis catus]
          Length = 1079

 Score =  896 bits (2316), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/1124 (44%), Positives = 674/1124 (59%), Gaps = 90/1124 (8%)

Query: 12   LRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNF 71
            L+EL R H+ESF+Y + EGLS    H  QA IS+            ++  S  V ++F  
Sbjct: 35   LQELTRAHVESFNYAVREGLS----HAVQADISWA-----------VNGISKGVIKQF-L 78

Query: 72   GQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMV 131
            G  P+M+K++ C+L     + L+   EEA EMGGYFI+NG+E+V R +I+P++N+P++MV
Sbjct: 79   GYVPIMVKSKLCNLYNLPPKALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMV 138

Query: 132  RSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLK 191
            R  ++ R  GYT   V + CVR++ S+V + L+YL NG+V L F  + + + LP+G  LK
Sbjct: 139  RPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALK 198

Query: 192  ALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHI 251
            ALV+ +D +IF  L         KE+ +     +S+ ++I++ E      +T+ Q L ++
Sbjct: 199  ALVNFSDYQIFQELI------KGKEEDSFFRNSISQMLRIVMEE----GCSTQKQVLNYL 248

Query: 252  GEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSD 311
            GE F+  +           AE +    I +HL  + +KF +L  M +KLF+L     + +
Sbjct: 249  GECFRVKLSLPDWYPNEQAAEFLFNQCICIHLKSSTEKFYMLCLMTRKLFALAKGECMEE 308

Query: 312  NPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDF-FNLANIKKVM 370
            NPDSL NQE+L PG L  ++LKEK+E WL      I+  ++   +K +   N  N+ K+ 
Sbjct: 309  NPDSLVNQEVLTPGQLFLMFLKEKMEAWLVS----IKIALDKRAQKANVSINTENLMKIF 364

Query: 371  EKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASF 430
                   +    E +L TG L ++TGL   Q +G  V A++LNF+R++S FR VHRGA F
Sbjct: 365  SM--GTDLTKPFEYLLATGNLRSKTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADF 422

Query: 431  AGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRT 490
            A +RTT+VR+LLPESWGFLCPVHTPDGEPCGL+NH+T+ C V + +              
Sbjct: 423  AKMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQF----------VYTA 472

Query: 491  SILRVLIGVGMIPSLPKLVKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKV 546
            SI  +L  +G+ P     V   P    S    VLLDG +VG +       V   LR  KV
Sbjct: 473  SIPALLCSLGVTP-----VDGAPHRPYSECYPVLLDGVMVGWVDKDLAPGVADSLRHFKV 527

Query: 547  SAASVIPDDLEVGYVPLS-LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFE 605
                 IP  +EV  +P++     YPGL+LFT+P + VRPV+N+ L  EE     LIG  E
Sbjct: 528  LREKRIPPWMEVALIPMTGKPSLYPGLFLFTTPCRLVRPVQNLELGKEE-----LIGTME 582

Query: 606  QVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQ 665
            Q+FM I   +        A   TH+E+ P  +LSV+AN  P+SDHNQSPRNMYQCQM KQ
Sbjct: 583  QIFMNIAIFED----EVLAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQ 638

Query: 666  TMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDME 725
            TMGF +   + R+D KLY LQTPQ+P+VR   Y  Y +D YP GTNAIVAV++YTGYDME
Sbjct: 639  TMGFPLLTYQARSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDME 698

Query: 726  DAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLP 785
            DAMI+NK+S +RG  HG +Y++E IDLS+   + D       +  D + L   +D DGLP
Sbjct: 699  DAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDDSLVFGVKPGDPRVLQK-LDDDGLP 757

Query: 786  YVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRH 844
            ++G  +  G+PY    +  T        K  E+  VD + V   ++ +   K   I  R 
Sbjct: 758  FIGAQLKYGDPYYGYLNLNTGENFVIYYKSKENCIVDNIKVCSNDTGSGKFKCICITMRV 817

Query: 845  TRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLES 904
             RNP IGDKF+SRHGQKG+ S+LWP  DMPFS  +GM PD++ NPH FPSRMTI ML+ES
Sbjct: 818  PRNPTIGDKFASRHGQKGILSRLWPAEDMPFSE-SGMVPDILFNPHGFPSRMTIGMLIES 876

Query: 905  VAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYS 964
            +A K  +LHG   DATPF  S           E  S ++  GEML+  G+N++G E LYS
Sbjct: 877  MAGKSAALHGLCHDATPFTFS-----------EENSALEYFGEMLKAAGYNFYGTERLYS 925

Query: 965  GVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEME 1024
            G+ G EL  +IFIG VYYQRLRHMVSDKFQVR+TG  D++T QPI GR   GGIRFGEME
Sbjct: 926  GISGIELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFGEME 985

Query: 1025 RDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP 1084
            RD+LLAHG ++LLHDRL  CSD  VA VC  CGS+L+     P           PP+ + 
Sbjct: 986  RDALLAHGTSFLLHDRLFNCSDRSVAHVCVECGSLLSPLLEKP-----------PPSWSA 1034

Query: 1085 ---KKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
               +K  C  C  S  ++TV++PYVFRY  AELAAMNIK+ L +
Sbjct: 1035 MRNRKYNCTLCNRSDTIDTVSVPYVFRYFVAELAAMNIKVKLDV 1078


>gi|302306565|ref|NP_982975.2| ABR029Wp [Ashbya gossypii ATCC 10895]
 gi|442570011|sp|Q75DS1.2|RPA2_ASHGO RecName: Full=DNA-directed RNA polymerase I subunit RPA2; AltName:
            Full=DNA-directed RNA polymerase I polypeptide 2;
            Short=RNA polymerase I subunit 2
 gi|299788577|gb|AAS50799.2| ABR029Wp [Ashbya gossypii ATCC 10895]
          Length = 1196

 Score =  896 bits (2316), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/1123 (44%), Positives = 691/1123 (61%), Gaps = 92/1123 (8%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
             R+   +Y GKL+  + +   D G     E  + G  PVML++ RCHL     Q+LV  K
Sbjct: 120  ARKRLTTYRGKLLLKLNWSVND-GEETFSEVRDCGPLPVMLQSNRCHLHKMSPQELVEHK 178

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EE+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R   Y+   V IRCVR DQ+
Sbjct: 179  EESDELGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFANRGTSYSHYGVQIRCVRPDQT 238

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            S T  L+YL +G V   F  +  EYL+PV ++LKAL D +D EIF+ +            
Sbjct: 239  SQTNVLHYLNDGQVTFRFSWRKNEYLVPVVLILKALTDASDREIFDGIV----------- 287

Query: 218  GA-VGSPLVSERVKIILAEVQDL--SLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETV 274
            GA   +  +++R++++L   +     L  R Q LQ++G+ F+ V+      S Y V + +
Sbjct: 288  GADTSNSFLTDRLELLLRGFKKRFPQLLNRRQVLQYLGDKFRVVLQASPDMSDYLVGQEL 347

Query: 275  IRDYIFVHLND-NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLK 333
            +R  + VHL D N DK N+L+FM++KL+SLV      DNPD+ Q+QE+LL G L  + +K
Sbjct: 348  LRRIVLVHLGDENTDKSNMLMFMIRKLYSLVAGECCPDNPDATQHQEVLLGGFLYGMIVK 407

Query: 334  EKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLAT 393
            EK+E++L+  K  IQ ++ N G   DF +   + +V+ +  ++ IG+ ++  L TG L +
Sbjct: 408  EKIEEYLQNIKLQIQADV-NRGMPVDFKDRKYMTRVLTR-INENIGSKLQYFLSTGNLVS 465

Query: 394  QTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVH 453
            Q+GLDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPVH
Sbjct: 466  QSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVH 525

Query: 454  TPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGP 513
            TPDG PCGLLNH    C++++         D SK+ T    +L  +G+ P+    V +  
Sbjct: 526  TPDGSPCGLLNHFAHKCKIST------TQSDVSKIPT----LLYSLGVSPA--AHVTAAG 573

Query: 514  PAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV-IPDDLEVGYVPLSLGGAYPGL 572
            P++  V LDG++VG     +   V   LR  KV   +  +P DLE+GYVP S  G YPGL
Sbjct: 574  PSLCCVQLDGKIVGWCSHEQGRIVADTLRYWKVEGKTDGLPLDLEIGYVPASKRGQYPGL 633

Query: 573  YLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEI 632
            YLF    + +RPVR + L  ++     ++GPFEQV+M+I      +  + N    TH E 
Sbjct: 634  YLFGGHSRMMRPVRYLPLDKQD-----IVGPFEQVYMDIAVTP--EEIQNNVH--THVEF 684

Query: 633  HPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPI 692
             PT +LS++ANLTP+SD NQSPRNMYQCQM KQTMG    AL  R+D KLY LQ+ QTPI
Sbjct: 685  SPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQSGQTPI 744

Query: 693  VRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDL 752
            V+ N Y  YG+D +P GTNA+VAV++YTGYDM+DAMI+NKS+ +RG  +G +Y+TE IDL
Sbjct: 745  VKANLYDDYGMDNFPNGTNAVVAVISYTGYDMDDAMIINKSADERGFSYGTVYKTEKIDL 804

Query: 753  SDDGNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRT 810
            S    + D   + F    D   K     +D DGLP +G  +  G+P C+ +D T N  + 
Sbjct: 805  SLSRGRGDPVTQHFGFGTDEWPKEWLEKLDEDGLPIIGSYVEEGDPICAYFDDTLNKTKI 864

Query: 811  NSRKGSESVFVDYVAV--DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLW 868
             +   SE  +++ V +  D  N     Q   I++R  R P IGDKFSSRHGQKGVCS+ W
Sbjct: 865  KTYHSSEPAYIEEVTLIGDESNKFQELQYITIKYRIRRVPQIGDKFSSRHGQKGVCSRKW 924

Query: 869  PDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKK 928
            P +DMPFS  TG++PD+IINPHAFPSRMTI M +ES+A K G+LHG   DATP+  S   
Sbjct: 925  PTVDMPFSE-TGIQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDATPWTFS--- 980

Query: 929  TNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHM 988
                    E  +  D  G+ L   G+NYHG E +YSG  G EL  +I+IG VYYQRLRHM
Sbjct: 981  --------EEDTPADYFGDQLLKAGYNYHGNEPMYSGATGEELRADIYIGVVYYQRLRHM 1032

Query: 989  VSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYH 1048
            V+DKFQVRSTG ++ +T QP+KGRKR GGIR GEMERD+L+ HG ++LL DRL   SDY 
Sbjct: 1033 VNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIGHGTSFLLQDRLLNSSDYT 1092

Query: 1049 VADVCSLCGSVLTATFIHPQKRAIREIGGLPPAR----------APKKVT---------- 1088
             + VC  CGS+LT       + ++ +IG +   R          A K +T          
Sbjct: 1093 QSAVCRECGSILTT------QSSVPKIGSMVTIRCRRCAISFDEAKKIITQQDSEDSIFI 1146

Query: 1089 --CHACQTSKGME--------TVAMPYVFRYLAAELAAMNIKI 1121
               H  +  +G +        TVA+P+V +YL +ELAAM I++
Sbjct: 1147 DDSHIWEDGQGNKFVGGGNTTTVAIPFVLKYLDSELAAMGIRL 1189


>gi|159124281|gb|EDP49399.1| DNA-directed RNA polymerase I subunit beta (Rpa2), putative
            [Aspergillus fumigatus A1163]
          Length = 1235

 Score =  896 bits (2316), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/1159 (43%), Positives = 692/1159 (59%), Gaps = 124/1159 (10%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPV--VRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
             R+   +Y GKL A +E+Q ++ G  +  +RE    GQ P+ML+T RCHL+ A  Q+LV 
Sbjct: 128  ARERHATYRGKLRARLEYQ-VNNGDWMESIRE---LGQVPIMLRTNRCHLEKATPQELVQ 183

Query: 96   LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
             KEE+ E+GGYFI+NG E++ R +++ K+N+PM++VRSSF  R   YT   + IR VR D
Sbjct: 184  HKEESEELGGYFIVNGNEKLIRMLVVGKRNFPMAIVRSSFVRRGHTYTKFGIQIRSVRPD 243

Query: 156  QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
            Q+S T  L+YL +G+V   F  +  EYL+PV +++KALV+TND EIF  +      K   
Sbjct: 244  QTSQTNVLHYLSDGNVTFRFSWRKNEYLIPVMMIMKALVETNDREIFEGIVGSATSK--- 300

Query: 216  EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
                V +  V++RV+++L   +  +L TR  C  ++GE F+PV+      S        +
Sbjct: 301  ---GVNNTFVTDRVELLLRTYKAYNLHTRSSCRAYLGEKFKPVLGVPADMSNEDAGTEFL 357

Query: 276  RDYIFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
            R  +  HL + N       DKF L++FM++KL++LV      DNPD++ NQEILL G L 
Sbjct: 358  RKIVLPHLGNQNVTEIQDYDKFKLIMFMIRKLYALVAGDCAPDNPDAVSNQEILLGGFLY 417

Query: 329  TIYLKEKLEDWLRKGKKLIQD-EIENNGKKFD--FFNLANIKKVMEKNPSKQIGTSIETM 385
             + LKE+LE+W+R    +++D    N G KF    F    + K++++  ++ IG  +E  
Sbjct: 418  GMILKEQLEEWMRSFGPILRDWSNRNGGAKFTDPAFERDFLSKIVKRT-NENIGGKLEYF 476

Query: 386  LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
            L TG L + TGLDLQQ +GYTV AE++NF RFIS FR +HRG+ FA L+TT+VRKLLPES
Sbjct: 477  LSTGNLVSPTGLDLQQVSGYTVMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPES 536

Query: 446  WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
            WGFLCPVHTPDG PCGLLNH+   C +A+   S  N+    K     L V +GV    S+
Sbjct: 537  WGFLCPVHTPDGAPCGLLNHLAHKCLIAT---SDVNVSHLPK-----LLVQLGVRSESSV 588

Query: 506  PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
              L  S     ++V LDGR+VG     +   +   +R  KVS    IP +LE+GYVP S 
Sbjct: 589  -ALEDS-----VTVQLDGRIVGYCSPKQARMIADTVRHWKVSGTHNIPRELEIGYVPNSN 642

Query: 566  GGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNA 624
            GG YPG+Y+F+   +  RPV+ + L       ++ +GPFEQ FMEI C PD    G    
Sbjct: 643  GGQYPGIYMFSQAARMYRPVKYLPL-----DKLDYVGPFEQPFMEIACLPDDLVAG---- 693

Query: 625  FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
              +TH E  PT +LS+VAN+TP+SD+NQSPRNMYQCQM+KQTMG    A+++R D KLY 
Sbjct: 694  -VSTHIEYTPTNILSIVANMTPFSDYNQSPRNMYQCQMSKQTMGTPGTAIEYRTDNKLYR 752

Query: 685  LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI 744
            LQT QTPIVR   Y  YG+D +P GTNA+VA+++YTGYDM+DAMI+NKSS +RG  +G I
Sbjct: 753  LQTGQTPIVRPPLYNAYGLDNFPNGTNAVVAIISYTGYDMDDAMIINKSSHERGFGYGTI 812

Query: 745  YQTETIDLSDDGNKVDRGQ----KLFRRNKDAK---SLHSVIDSDGLPYVGQMIHPGEPY 797
            Y+T+   L D  ++  + +    KLF      +      + +D DGLP+VG  +  G   
Sbjct: 813  YKTKIHSLDDKDSRRSKSRREITKLFGFAPGGEIRAEWRTTLDEDGLPHVGARVKEGSLI 872

Query: 798  CSI----YDKTTNSW-------RTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHT 845
             +     YD  ++S+            K +E  ++D + +    +   P Q  ++++R  
Sbjct: 873  AAWHTVRYDAASDSYVNVDGITHFVKYKDAEEGYIDSIRIMGAETGLEPCQALSVKYRIP 932

Query: 846  RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
            R P+IGDKFSSRHGQKGVCSQLWP +DMPFS  +G++PDLIINPHAFPSRMTIA ++ES+
Sbjct: 933  RKPVIGDKFSSRHGQKGVCSQLWPAVDMPFSE-SGIQPDLIINPHAFPSRMTIAQMIESM 991

Query: 906  AAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSG 965
            A K G+LHG   D+TPF  S           E  +  D  G+ LR  G+NY+G E LYSG
Sbjct: 992  AGKAGALHGHPQDSTPFQFS-----------EENTAADYFGQQLRKAGYNYYGNEPLYSG 1040

Query: 966  VYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMER 1025
            + G E   +IFIG V+YQRLRHMV+DKFQVR+TG ++Q+T QP+KGR +GGGIR GEMER
Sbjct: 1041 ITGKEFAADIFIGVVHYQRLRHMVNDKFQVRTTGPVNQLTGQPVKGRAKGGGIRVGEMER 1100

Query: 1026 DSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGG-------- 1077
            DSL+AHGAA++L DRL  CSD   A +C  CGS L+         A+   G         
Sbjct: 1101 DSLIAHGAAFILQDRLMNCSDSQRAWICRDCGSFLSTQV------AVSSAGSSKARLAAS 1154

Query: 1078 ---------LPPARAPKKVTCHACQTSKGME----------------------TVAMPYV 1106
                        + AP  V C  C      E                       VA+P V
Sbjct: 1155 AAAAAKNAFAQQSGAPGIVRCRRCAREAVFEDSRAVVWEDGDGRRYVGGDNVTIVAVPGV 1214

Query: 1107 FRYLAAELAAMNIKITLQL 1125
             RYL  ELAAM I++   +
Sbjct: 1215 LRYLDVELAAMGIRMKFWV 1233


>gi|154152065|ref|NP_001093762.1| DNA-directed RNA polymerase I subunit RPA2 [Bos taurus]
 gi|151553633|gb|AAI48065.1| POLR1B protein [Bos taurus]
 gi|296482453|tpg|DAA24568.1| TPA: DNA-directed RNA polymerase I subunit RPA2 [Bos taurus]
          Length = 1135

 Score =  896 bits (2316), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/1165 (42%), Positives = 672/1165 (57%), Gaps = 116/1165 (9%)

Query: 12   LRELVRHHIESFDYMLDEGLSEMFD----------------------------------- 36
            L+EL R H+ESF+Y + EGLS                                       
Sbjct: 35   LQELTRAHVESFNYAVREGLSHAVQAVPPFEFAFKDERICLTIVDAVISPPAVPKGSICK 94

Query: 37   -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
                    CR  + +Y GKL AD+ +        V+++    G  P+M+K++ C+L    
Sbjct: 95   ELNVYPAECRGRRSTYRGKLTADISWSVNGISKGVIKQFL--GYVPIMVKSKLCNLYNLP 152

Query: 90   SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
             + L+   EEA EMGGYFI+NG+E+V R +I+P++N+P++MVR  ++ R  GYT   V +
Sbjct: 153  PKALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMVRPKWKSRGPGYTQYGVSM 212

Query: 150  RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
             CVR++ S+V + L+YL NG+V L F  + + + LP+G  LKALV  +D +IF  L    
Sbjct: 213  HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269

Query: 210  DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
                 KE  +     VS+ ++I++ E      +T+ Q L ++GE F+  +          
Sbjct: 270  ---KGKEDDSFFRNSVSQMLRIVMEE----GCSTQKQVLNYLGERFRVKLSLPDWYPNEQ 322

Query: 270  VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
             AE +    I +HL  N +KF +L  M +KLF+L     + +NPDSL NQE+L PG L  
Sbjct: 323  AAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEENPDSLMNQEVLTPGQLFL 382

Query: 330  IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
            ++LKEKLE WL   K  I  + +      +  NL  I  +        +    E +L TG
Sbjct: 383  MFLKEKLEAWLVSIKIAIDKKSQKTNVSLNSENLMKIFSL-----GIDLTKPFEYLLATG 437

Query: 390  RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
             L ++TGL   Q +G  V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGFL
Sbjct: 438  NLRSKTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFL 497

Query: 450  CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
            CPVHTPDGEPCGL+NH+T+ C V +           S    SI  +L  +G+ P     V
Sbjct: 498  CPVHTPDGEPCGLMNHLTAICEVVTQ----------SVYTASIPALLCNLGVTP-----V 542

Query: 510  KSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS- 564
               P    S    VLLDG ++G         +   LR  KV     IP  +EV  +P++ 
Sbjct: 543  DGTPHRPYSECYPVLLDGVMIGWADKEIAPGIADSLRHFKVLREKRIPPWMEVALIPMTG 602

Query: 565  LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNA 624
                YPGLYLFT+P + VRPV+N+ L  EE     LIG  EQ+FM +   +        A
Sbjct: 603  KPSLYPGLYLFTTPCRLVRPVQNLELGKEE-----LIGTMEQIFMNVAIFED----EVLA 653

Query: 625  FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
               TH+E+ P  +LSV+AN  P+SDHNQSPRNMYQCQM KQTMGF +   + R+D KLY 
Sbjct: 654  GVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTFQDRSDNKLYR 713

Query: 685  LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI 744
            LQTPQ+P+VR   Y  Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG  HG +
Sbjct: 714  LQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSV 773

Query: 745  YQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT 804
            Y++E IDLS+   + D       +  D + L   +D+DGLP++G  +  G+PY S  +  
Sbjct: 774  YKSEFIDLSERIKQGDDSLVFGVKPGDPRVLQK-LDNDGLPFIGAQLKYGDPYYSYLNLN 832

Query: 805  TNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGV 863
            T        K  E+  VD + V   ++     K   I  R  RNP IGDKF+SRHGQKG+
Sbjct: 833  TGEGFVMYYKSKENCIVDNIKVCSNDTGTGKFKCVCITMRVPRNPTIGDKFASRHGQKGI 892

Query: 864  CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFA 923
             S+LWP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+A K  +LHG   DATPF 
Sbjct: 893  LSRLWPVEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFI 951

Query: 924  NSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQ 983
             S           E  S ++  GEML+  G+NY+G E LYSG+ G EL  +IFIG VYYQ
Sbjct: 952  FS-----------EENSALEYFGEMLKAAGYNYYGTERLYSGISGLELEADIFIGVVYYQ 1000

Query: 984  RLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHT 1043
            RLRHMVSDKFQVR+TG  D++T QPI GR   GGIRFGEMERD+LLAHG ++LLHDRL  
Sbjct: 1001 RLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFN 1060

Query: 1044 CSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP---KKVTCHACQTSKGMET 1100
            CSD  VA VC  CGS+L+     P           PP+ +    +K  C  C  S  ++T
Sbjct: 1061 CSDRSVAHVCVKCGSLLSPLLEKP-----------PPSWSALRNRKYICALCNRSDTIDT 1109

Query: 1101 VAMPYVFRYLAAELAAMNIKITLQL 1125
            +++PYVFRY  AELAAMNIK+ L +
Sbjct: 1110 ISLPYVFRYFVAELAAMNIKVKLDI 1134


>gi|359321637|ref|XP_003639648.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like isoform 1
            [Canis lupus familiaris]
          Length = 1135

 Score =  896 bits (2316), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/1166 (42%), Positives = 676/1166 (57%), Gaps = 118/1166 (10%)

Query: 12   LRELVRHHIESFDYMLDEGLSEMFD----------------------------------- 36
            L+EL R H+ESF+Y + EGLS                                       
Sbjct: 35   LQELTRAHVESFNYAVREGLSHAVQAIPPFEFAFKDERISLTIVDAVISPPMVPKGNICK 94

Query: 37   -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
                    CR  + +Y GKL AD+ +        ++++    G  P+M+K++ C+L    
Sbjct: 95   ELNIYPAECRGRRSTYRGKLTADISWAVNGISKGIIKQFL--GYIPIMVKSKLCNLHSLP 152

Query: 90   SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
             + L+   EE  EMGGYFI+NG+E+V R +I+P++N+P++M+R  ++ R  GYT   V +
Sbjct: 153  PKALIEHHEEVEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSM 212

Query: 150  RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
             CVR++ S+V + L+YL NG+V L F  + + + LP+G  LKALV  +D +IF  L    
Sbjct: 213  HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269

Query: 210  DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
                 KE+ +     VS+ ++I++ E      +T+ Q L ++GE F+  +          
Sbjct: 270  ---KGKEEDSFFRNSVSQMLRIVMEE----GCSTQKQVLNYLGERFRVKLSLPDWYPNEQ 322

Query: 270  VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
             AE +    I +HL  N +KF +L  M +KLF+L     + DNPDSL NQE+L PG L  
Sbjct: 323  AAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFL 382

Query: 330  IYLKEKLEDWLRKGKKLIQDEIENNGKKFDF-FNLANIKKVMEKNPSKQIGTSIETMLKT 388
            ++LKEK+E WL      I+  ++   +K +   N  N+ ++   N    +    E +L T
Sbjct: 383  MFLKEKMESWLVS----IKIALDKRSQKTNVSINTENLMRIF--NLGTDLTKPFEYLLAT 436

Query: 389  GRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGF 448
            G L ++TGL   Q +G  V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGF
Sbjct: 437  GNLRSKTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGF 496

Query: 449  LCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKL 508
            LCPVHTPDGEPCGL+NH+T+ C V +                S+  +L  +G+ P     
Sbjct: 497  LCPVHTPDGEPCGLMNHLTAVCEVVTQ----------CVYTASVPTLLCSLGVTP----- 541

Query: 509  VKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS 564
            V   P    S    VLLDG +VG +       +   LR  KV     IP  +EV  +P++
Sbjct: 542  VDGAPHRPYSECYPVLLDGVMVGWVDKELAPSIAESLRHFKVLKEKRIPPWMEVALIPMT 601

Query: 565  -LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRN 623
                 YPGL+LFT+P + VRPV+N+ L  EE     LIG  EQ+FM I   +        
Sbjct: 602  GKPSLYPGLFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQIFMNIAIFED----EVL 652

Query: 624  AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
            A   TH+E+ P  +LSV+AN  P+SDHNQSPRNMYQCQM KQTMGF +   + R+D KLY
Sbjct: 653  AGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQARSDNKLY 712

Query: 684  HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
             LQTPQ+P+VR   Y  Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG  HG 
Sbjct: 713  RLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGS 772

Query: 744  IYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDK 803
            +Y++E IDLS+   + D       +  D + L   +D DGLP++G  +  G+PY S  + 
Sbjct: 773  VYKSEFIDLSEKIKQGDDSLVFGVKPGDPRILQK-LDDDGLPFIGARLQYGDPYYSYLNL 831

Query: 804  TTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKG 862
             T        K  E+  VD + V   ++ N   K   I  R  RNP IGDKF+SRHGQKG
Sbjct: 832  NTGESFVTYYKSKENCIVDNIKVCSNDTGNGRFKCVCITMRVPRNPTIGDKFASRHGQKG 891

Query: 863  VCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPF 922
            + S+LWP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+A K  +LHG   DATPF
Sbjct: 892  ILSRLWPVEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPF 950

Query: 923  ANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYY 982
              S           E  S ++  GE+L+  G+N++G E LYSG+ G EL  +IFIG VYY
Sbjct: 951  TFS-----------EENSALEYFGELLKAAGYNFYGTERLYSGISGIELEADIFIGVVYY 999

Query: 983  QRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLH 1042
            QRLRHMVSDKFQVR+TG  D++T QPI GR   GGIRFGEMERD+LLAHG ++LLHDRL 
Sbjct: 1000 QRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLF 1059

Query: 1043 TCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP---KKVTCHACQTSKGME 1099
             CSD  VA VC  CGS+L+     P           PP+ +    +K  C  C  S  ++
Sbjct: 1060 NCSDRSVAHVCVKCGSLLSPLLEKP-----------PPSWSAMRNRKYNCTLCDRSDTID 1108

Query: 1100 TVAMPYVFRYLAAELAAMNIKITLQL 1125
            TV++PYVFRY  AELAAMNIK+ L +
Sbjct: 1109 TVSVPYVFRYFVAELAAMNIKVKLDV 1134


>gi|50425489|ref|XP_461338.1| DEHA2F22902p [Debaryomyces hansenii CBS767]
 gi|49657007|emb|CAG89744.1| DEHA2F22902p [Debaryomyces hansenii CBS767]
          Length = 1167

 Score =  896 bits (2316), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/1115 (43%), Positives = 677/1115 (60%), Gaps = 89/1115 (7%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
             CR+   +Y  +LM  V +   D     V E    GQ PVMLKT RCHL+     +LV  
Sbjct: 105  ECRERMSTYRSRLMLKVTWSVNDGDE--VSEIREAGQVPVMLKTNRCHLEKLSPSELVDQ 162

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
            KEE+ EMGGYFI+NG+E++ R +I+ ++N+PM+++R SF +R   YT   + IRCVR DQ
Sbjct: 163  KEESDEMGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFGNRGASYTKFGIQIRCVRPDQ 222

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
            +S T  L+YL +G+V   F  +  EYL+P  ++LKAL++TND EIF+ +           
Sbjct: 223  TSQTNVLHYLNDGNVTFRFSWKKNEYLVPAMMILKALIETNDREIFDGII---------- 272

Query: 217  KGA-VGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
             GA   +  +++R++++L   +  +L ++ + L ++G+ F+ V       S   V + V+
Sbjct: 273  -GADTSNSFLTDRLELLLRTYKQYNLYSKQETLAYLGDKFRIVFGSAPDVSDIEVGKEVL 331

Query: 276  RDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEK 335
            +  + VHL +N DKF +L+FM++KL+SLV      DNPD+ Q+QE+LL G L  + +KEK
Sbjct: 332  QRIVLVHLPNNLDKFRMLLFMIRKLYSLVAGDCCPDNPDATQHQEVLLGGFLYGMIIKEK 391

Query: 336  LEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQT 395
            ++++L+  K  IQ +I N G   +F +   + +V  +  ++ IG  ++  L TG L +Q+
Sbjct: 392  IDEYLQNIKLQIQSDI-NRGIAINFNDRKYMSRVFLR-INENIGQKLQYFLSTGNLVSQS 449

Query: 396  GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTP 455
            GLDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPVHTP
Sbjct: 450  GLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAELKTTTVRKLLPESWGFLCPVHTP 509

Query: 456  DGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPA 515
            DG PCGLLNH++  C++A+               + + +V + +  +   P    +  P 
Sbjct: 510  DGSPCGLLNHLSHKCQIAT-------------EASDVSQVPVALAQLGVSPAHSFAAGPN 556

Query: 516  VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLF 575
            +  V LDG+V+G       + V   LR  KV     +P DLEVGYVP S  G YPGLYLF
Sbjct: 557  LCCVQLDGKVMGWTTHEHGKIVADTLRYWKVEGNHGLPLDLEVGYVPPSTKGQYPGLYLF 616

Query: 576  TSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPA-------T 628
                + +RP + + L        +++GPFEQV+M++              PA       T
Sbjct: 617  GGHSRMMRPTKYLPL-----NKTDILGPFEQVYMDVAVT-----------PAEIENNIHT 660

Query: 629  HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTP 688
            H E  PT +LS++ANLTP+SD NQSPRNMYQCQM KQTMG    AL  R+D KLY LQT 
Sbjct: 661  HVEFSPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALNHRSDNKLYRLQTG 720

Query: 689  QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
            QTPIV+ + Y  YG+D +P G NA+VAV++YTGYDM+DAMI+NKS+ +RG  +G +Y+ E
Sbjct: 721  QTPIVKASLYDDYGMDNFPNGMNAVVAVISYTGYDMDDAMIINKSADERGFGYGTVYKVE 780

Query: 749  TIDLSDDGNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN 806
             +DLS    + D   + F    D   +S    +D+DGLP +G  +  G+P  + YD T  
Sbjct: 781  KVDLSQSRRRGDPITQHFGFGTDEWPESWREKLDADGLPLIGVKVDEGDPIVAYYDDTLG 840

Query: 807  SWRTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQKGVCS 865
              +  +   +E  +++ V +   +S +   Q+  I++R TR P+IGDKFSSRHGQKGVCS
Sbjct: 841  RTKVKTYHSTEPAYIEEVKLLGDDSGDQEGQQITIKYRITRQPLIGDKFSSRHGQKGVCS 900

Query: 866  QLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANS 925
            + WP +DMPFS  TG++PD+IINPHAFPSRMTI M +ES+A K G+LHG   DATP+  S
Sbjct: 901  RKWPQVDMPFSE-TGIQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDATPWKFS 959

Query: 926  VKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRL 985
                       E  +  D  GE L   G+NYHG E +YSG  G EL  +I+IG VYYQRL
Sbjct: 960  -----------EDDTPADFFGEQLSKAGYNYHGNEPMYSGATGEELRADIYIGCVYYQRL 1008

Query: 986  RHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCS 1045
            RHMV+DKFQVRSTG ++ +T QP+KGRKR GGIR GEMERD+L+ HG A+LL DRL  CS
Sbjct: 1009 RHMVNDKFQVRSTGPVNSLTMQPVKGRKRSGGIRVGEMERDALIGHGTAFLLQDRLLNCS 1068

Query: 1046 DYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTS---------- 1095
            DY    VC  CGS+L      P+   I     +   R   K+  ++ Q            
Sbjct: 1069 DYTQTSVCRSCGSLLNTQTSVPR---IGTAASIRCRRCSVKIESYSQQGEYVNESEIWQD 1125

Query: 1096 ---------KGMETVAMPYVFRYLAAELAAMNIKI 1121
                     +   TVA+P+V +YL +ELAAM IK+
Sbjct: 1126 GQGKKFVGGENTTTVAIPFVLKYLDSELAAMGIKM 1160


>gi|134078852|emb|CAK45911.1| unnamed protein product [Aspergillus niger]
          Length = 1213

 Score =  896 bits (2316), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/1143 (43%), Positives = 689/1143 (60%), Gaps = 114/1143 (9%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPV--VRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
            CR+   +Y GKL A +E++ ++ G  +  VRE    GQ P+ML+T RCHL+ A   +LV 
Sbjct: 128  CRERHATYRGKLRARIEWR-VNNGDWMESVRE---LGQVPIMLRTNRCHLEKATPSELVE 183

Query: 96   LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
             KEE+ E+GGYFI+NG E++ R +++ K+NYPM+++R SF  R   YT   V IR VR D
Sbjct: 184  HKEESEELGGYFIVNGNEKLIRMLVVGKRNYPMAIIRGSFVRRGHTYTKYGVQIRSVRPD 243

Query: 156  QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
            Q+S T  L+YL +G++   F  +  EYL+PV ++LKALV+TND EIF  +      +   
Sbjct: 244  QTSQTNVLHYLTDGNLTFRFSWRKAEYLVPVMMILKALVETNDREIFEGIVGSASSE--- 300

Query: 216  EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
                + +  V++RV+++L   +  +  +R  C  ++GE F+PV+      S        +
Sbjct: 301  ---GIKNTFVTDRVELLLRVYKAYNTHSRAACRAYLGEKFRPVLGVPADMSNEDAGTEFL 357

Query: 276  RDYIFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
            R  +  HL + N       DKF +++FM++KL++LV      DNPD++ NQEILL G L 
Sbjct: 358  RKVVLPHLGNQNVTENQDYDKFKMILFMIRKLYALVAGDCAPDNPDAVSNQEILLGGFLY 417

Query: 329  TIYLKEKLEDWLRKGKKLIQD-EIENNGKKFD--FFNLANIKKVMEKNPSKQIGTSIETM 385
             + LKE+LE+W+R  + +++D    N G KF    F    + KV++++ ++ +G ++E  
Sbjct: 418  GMILKERLEEWVRSFQPILRDWSNRNGGAKFTDPAFERDFLAKVVKRS-NENLGGALEYF 476

Query: 386  LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
            L TG L + TGLDLQQ +GYTV AE++NF RFIS FR +HRG+ FA L+TT+VRKLLPES
Sbjct: 477  LSTGNLVSPTGLDLQQPSGYTVMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPES 536

Query: 446  WGFLCPVHTPDGEPCGLLNHMTSTCRVA-SYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
            WGF CPVHTPDG PCGLLNH+   C +A S  D+           T I + L+ +G+   
Sbjct: 537  WGFFCPVHTPDGSPCGLLNHLAHKCLIATSDVDT-----------THIPKALVQLGVRSD 585

Query: 505  LPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS 564
                V       ++V LDGR++G     +   +   LRR KV  +  IP +LE+GY+P +
Sbjct: 586  SSVSVTES----VTVQLDGRIIGYCSPKQASAIANTLRRWKVMGSDKIPRELEIGYIPNT 641

Query: 565  LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRN 623
             GG YPG+Y+F+   +  RPV+++ L       ++ +GPFEQ FMEI C P     G   
Sbjct: 642  NGGQYPGIYMFSQAARMYRPVKHLGL-----DKLDYVGPFEQPFMEIACLPQDLISG--- 693

Query: 624  AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
               +TH E  PT +LS+VAN+TP+SD NQSPRNMYQCQM+KQTMG    A+++R D KLY
Sbjct: 694  --VSTHIEFTPTNILSIVANMTPFSDQNQSPRNMYQCQMSKQTMGTPGTAIQYRTDNKLY 751

Query: 684  HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
             LQT QTPIVR   Y  YG+D +P GTNA+VA+++YTGYDM+DAMI+NKSS +RG  +G 
Sbjct: 752  RLQTGQTPIVRPPLYNAYGLDNFPNGTNAVVAIISYTGYDMDDAMIINKSSHERGFGYGT 811

Query: 744  IYQTETIDLSDDGNKVDRGQ----KLFRRNKDAK---SLHSVIDSDGLPYVGQMIHPGEP 796
            IY+T+   L +  ++  + +    KLF      +      + +D DGLP++G  +  G  
Sbjct: 812  IYKTKIHSLDEKDSRRGKSRREVTKLFGFAPGGEIRADWRATLDEDGLPHIGARVKEGSL 871

Query: 797  YCSI----YDKTTNSW-------RTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRH 844
              +     YD  ++S+            K +E  ++D V +    S   P +A ++++R 
Sbjct: 872  VAAWHTVRYDAASDSYVNVDGITHFVKYKDAEEGYIDSVRILGAESGVEPGQALSVKYRI 931

Query: 845  TRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLES 904
             R PIIGDKFSSRHGQKGVCSQLWP +DMPFS  +G++PDLIINPHAFPSRMTIA ++ES
Sbjct: 932  PRKPIIGDKFSSRHGQKGVCSQLWPAVDMPFS-ESGIQPDLIINPHAFPSRMTIAQMIES 990

Query: 905  VAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYS 964
            +A K G+LHG   D+TPF  S           E  +  D  G  LR  G+NY G E LYS
Sbjct: 991  MAGKAGALHGHPQDSTPFQFS-----------EENTAADYFGHQLRKAGYNYFGNEPLYS 1039

Query: 965  GVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEME 1024
            G+ G E   +IFIG V+YQRLRHMV+DKFQVR+TG ++Q+T QP+KGR +GGGIR GEME
Sbjct: 1040 GITGKEFAADIFIGVVHYQRLRHMVNDKFQVRTTGPVNQLTGQPVKGRAKGGGIRVGEME 1099

Query: 1025 RDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP 1084
            RDSL+AHGAA++L DRL  CSD   + +C  CGS L+         A+   GG     AP
Sbjct: 1100 RDSLIAHGAAHILQDRLMNCSDATRSWICRDCGSFLSTQV------AVSSAGG-----AP 1148

Query: 1085 KKVTCHACQTSKGME----------------------TVAMPYVFRYLAAELAAMNIKIT 1122
              V C  C      E                       VA+P V RYL  ELAAM I++ 
Sbjct: 1149 SIVRCRRCAREAVFEDSRADVWEDGDGRRYVGGDNVTVVAVPGVLRYLDVELAAMGIRMK 1208

Query: 1123 LQL 1125
              +
Sbjct: 1209 FWV 1211


>gi|403303873|ref|XP_003942543.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 2
            [Saimiri boliviensis boliviensis]
          Length = 1079

 Score =  896 bits (2316), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/1123 (43%), Positives = 670/1123 (59%), Gaps = 88/1123 (7%)

Query: 12   LRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNF 71
            L+EL R H+ESF+Y + EGL                 + AD+ +        ++++  + 
Sbjct: 35   LQELTRAHVESFNYAVHEGLGL--------------AVQADINWAVNGISKGIIKQ--SL 78

Query: 72   GQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMV 131
            G  P+M+K++ C+L     Q L+   EEA EMGGYFI+NG+E+V R +I+P++N+P++M+
Sbjct: 79   GYVPIMVKSKLCNLYNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMI 138

Query: 132  RSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLK 191
            R  ++ R  GYT   V + CVR++ S+V + L+YL NG+V L F  + + + LP+G  LK
Sbjct: 139  RPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALK 198

Query: 192  ALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHI 251
            ALV  +D +IF  L         KE  +     VS+ ++I++ E      +T+ Q L ++
Sbjct: 199  ALVSFSDYQIFQELI------KGKEDDSFFRNSVSQMLRIVMEE----GCSTQKQVLNYL 248

Query: 252  GEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSD 311
            GE F+  ++          AE ++   I +HL  N +KF +L  M +KLF+L     + D
Sbjct: 249  GECFRVKLNVPDWYPNEQAAEFLLNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMED 308

Query: 312  NPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVME 371
            NPDSL NQE+L PG L  ++LKEKLE WL   K     + +      +  NL  I  +  
Sbjct: 309  NPDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTNVSMNTDNLMKIFTM-- 366

Query: 372  KNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFA 431
                  +    E +L TG L ++TGL L Q +G  V A++LNF+R++S FR VHRG+ FA
Sbjct: 367  ---GLDLTKPFEYLLATGNLRSKTGLGLLQESGLCVVADKLNFIRYLSHFRCVHRGSDFA 423

Query: 432  GLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS 491
             +RTT+VR+LLPESWGFLCPVHTPDGEPCGL+NH+T+ C V + +             TS
Sbjct: 424  KMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQF----------VYTTS 473

Query: 492  ILRVLIGVGMIPSLPKLVKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVS 547
            I  +L  +G+ P     V   P    S    VLLDG +VG +       +   LR  KV 
Sbjct: 474  IPALLCNLGVTP-----VDGAPHRPYSECYPVLLDGVMVGWVDKELASGIADSLRHFKVL 528

Query: 548  AASVIPDDLEVGYVPLS-LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQ 606
                IP  +EV  +P++     YPGL+LFT+P + VRPV+N+ L  EE     LIG  EQ
Sbjct: 529  REKRIPPWMEVVLIPMTGKPSLYPGLFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQ 583

Query: 607  VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQT 666
            +FM +   +        A   TH+E+ P  +LSV+AN  P+SDHNQSPRNMYQCQM KQT
Sbjct: 584  IFMNVAIYED----EVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQT 639

Query: 667  MGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMED 726
            MGF +   + R+D KLY LQTPQ+P+VR + Y  Y +D YP GTNAIVAV++YTGYDMED
Sbjct: 640  MGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMED 699

Query: 727  AMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPY 786
            AMI+NK+S +RG  HG +Y++E IDLS+   + D       +  D + L   +D DGLP+
Sbjct: 700  AMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKLGDPRVLQK-LDDDGLPF 758

Query: 787  VGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHT 845
            +G  +  G+PY S  +  T        K  E+  VD + V   ++ +   K   I  R  
Sbjct: 759  IGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVP 818

Query: 846  RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
            RNP IGDKF+SRHGQKG+ S+LWP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+
Sbjct: 819  RNPTIGDKFASRHGQKGILSRLWPVEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESM 877

Query: 906  AAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSG 965
            A K  +LHG   DATPF  S           E  S ++  GEML+  G+N++G E LYSG
Sbjct: 878  AGKSAALHGLCHDATPFIFS-----------EENSALEYFGEMLKAAGYNFYGTERLYSG 926

Query: 966  VYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMER 1025
            + G EL  +IFIG VYYQRLRHMVSDKFQVR+TG  D++T QPI GR   GGIRFGEMER
Sbjct: 927  ISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMER 986

Query: 1026 DSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP- 1084
            D+LLAHG ++LLHDRL  CSD  VA VC  CGS+L+     P           PP+ +  
Sbjct: 987  DALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKP-----------PPSWSAM 1035

Query: 1085 --KKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
              +K  C  C  S  ++TV++PYVFRY  AELAAMNIK+ L +
Sbjct: 1036 RNRKYNCTLCHRSDTIDTVSVPYVFRYFVAELAAMNIKVKLDV 1078


>gi|67526951|ref|XP_661537.1| hypothetical protein AN3933.2 [Aspergillus nidulans FGSC A4]
 gi|40740052|gb|EAA59242.1| hypothetical protein AN3933.2 [Aspergillus nidulans FGSC A4]
 gi|259481492|tpe|CBF75062.1| TPA: DNA-directed RNA polymerase I subunit beta (Rpa2), putative
            (AFU_orthologue; AFUA_6G08300) [Aspergillus nidulans FGSC
            A4]
          Length = 1231

 Score =  896 bits (2315), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/1155 (43%), Positives = 700/1155 (60%), Gaps = 120/1155 (10%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAG-SPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
            CR+   +Y GKL A +E++  +   +  VRE    GQ P+ML+T RC+L+ A   +LV  
Sbjct: 128  CRERHATYRGKLRAKIEYRVNNGDWTEQVRE---LGQVPIMLRTNRCYLEKATPAELVQH 184

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
            KEE+ E+GGYFI+NG E++ R +I+ ++NYPM++VR++F +R   Y+   + IR VR DQ
Sbjct: 185  KEESEELGGYFIVNGNEKLIRMLIVGRRNYPMAIVRNTFTNRGHAYSKFGIQIRSVRPDQ 244

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
            +S T  L+YL +G+V   F  +  EY++PV ++LKALV+TND EIF  +      +    
Sbjct: 245  TSQTNVLHYLNDGNVTFRFSWRKNEYIIPVVMILKALVETNDREIFEGIVGSASSE---- 300

Query: 217  KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAET-VI 275
               + +  V++RV+++L   +   L +R +C   IGE F+PV+ G+ +++    A T  +
Sbjct: 301  --GINNTFVTDRVELLLRTYKAYKLHSRSECRAFIGEKFKPVL-GVPADTPNEEAGTEFL 357

Query: 276  RDYIFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
            R  +  HL + N       DKF +L+FM++KL++LV      DNPD++ NQEILL G L 
Sbjct: 358  RKVVLPHLGNQNVTETQDYDKFKMLMFMIRKLYALVAGDCAPDNPDAVSNQEILLGGFLY 417

Query: 329  TIYLKEKLEDWLRKGKKLIQD-EIENNGKKFD--FFNLANIKKVMEKNPSKQIGTSIETM 385
             + LKE+L++W+R    +++D    N+G +F    F    + KV+ ++ ++ IG ++E  
Sbjct: 418  GMLLKERLDEWVRSFGPILRDWSNRNHGARFTDPAFERDFVSKVIRRS-NENIGGAMEYF 476

Query: 386  LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
            L TG L + TGLDLQQ +GYTV AE++NF RFIS FR +HRG+ FA L+TT+VRKLLPES
Sbjct: 477  LSTGNLVSPTGLDLQQTSGYTVMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPES 536

Query: 446  WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
            WGFLCPVHTPDG PCGLLNH+   C VA+   S  ++    K     L V +GV    S+
Sbjct: 537  WGFLCPVHTPDGSPCGLLNHLAHKCLVAT---SDTDVSHLPK-----LLVQLGVRNESSV 588

Query: 506  PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
              L +S     ++V LDGR++G     +   + + LR  KVS  + +P  LE+GYVP S 
Sbjct: 589  -SLDES-----VTVQLDGRIIGYCSPKQARVIASTLRHWKVSGTNNVPLGLEIGYVPNSN 642

Query: 566  GGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNA 624
            GG YPG+Y+F+   +  RPV+ + L       ++ +GPFEQ FMEI C P     G    
Sbjct: 643  GGQYPGIYMFSQAARMYRPVKYLPL-----DKLDYVGPFEQPFMEIACLPSDLVKGL--- 694

Query: 625  FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
              +TH E  PT +LS+VAN+TP+SD+NQSPRNMYQCQM+KQTMG    A+ +R D KLY 
Sbjct: 695  --STHIEFTPTNILSIVANMTPFSDYNQSPRNMYQCQMSKQTMGTPGTAIDYRTDNKLYR 752

Query: 685  LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI 744
            LQT QTPIVR   Y  YG+D +P GTNA+VA+++YTGYDM+DAMI+NKSS +RG  +G +
Sbjct: 753  LQTGQTPIVRPPLYNAYGLDNFPNGTNAVVAIISYTGYDMDDAMIINKSSHERGFGYGTV 812

Query: 745  YQTETIDLSDDGNKVDRG----QKLFRRNKDAK---SLHSVIDSDGLPYVGQMIHPGE-- 795
            Y+T+   L +  ++  +     QKLF     ++      + +D DG P++G  I  G   
Sbjct: 813  YKTKVHSLDEKDSRRTKSKQAVQKLFGFAPGSEIRAEWRATLDEDGFPHIGAEIKEGSIV 872

Query: 796  -PYCSI-YDKTTNSW-------RTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHT 845
              Y ++ YD T++S+            K SE  ++D + +    +   P +A ++++R  
Sbjct: 873  AAYHTVRYDATSDSYINVDGITHFVKYKDSERAYIDSIRIMGSETGTEPAQAISVKYRIP 932

Query: 846  RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
            R PIIGDKFSSRHGQKGVCSQLWP +DMPFS  +G++PDLIINPHAFPSRMTIA ++ES+
Sbjct: 933  RKPIIGDKFSSRHGQKGVCSQLWPAVDMPFSE-SGIQPDLIINPHAFPSRMTIAQMIESM 991

Query: 906  AAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSG 965
            A K G+LHG   D TPF  S           E  +  D  GE LR  G+NY+G E LYSG
Sbjct: 992  AGKAGALHGHPQDCTPFQFS-----------EEYTATDYFGEQLRRAGYNYYGNEPLYSG 1040

Query: 966  VYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMER 1025
            + G E   +IFIG V+YQRLRHMV+DKFQVR+TG ++ +T QP+KGR +GGGIR GEMER
Sbjct: 1041 ITGKEFAADIFIGVVHYQRLRHMVNDKFQVRTTGPVNNLTGQPVKGRAKGGGIRVGEMER 1100

Query: 1026 DSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPK 1085
            DSL+AHGAAY+L DRL  CSD   A +C  CGS L+         A+   G      A K
Sbjct: 1101 DSLIAHGAAYILQDRLMNCSDSQRAWICRDCGSFLSTQV------AVSSAGSSKARMAAK 1154

Query: 1086 K-------------VTCHACQTSK----------------------GMETVAMPYVFRYL 1110
                          V C  C                           +  VA+P V RYL
Sbjct: 1155 NSSGSAALGGNAGIVRCRRCAREAVFDDSRAVVWEDGEGRRFVGGDNVTVVAVPGVLRYL 1214

Query: 1111 AAELAAMNIKITLQL 1125
              ELAAM I++  ++
Sbjct: 1215 DVELAAMGIRMKFRV 1229


>gi|170091560|ref|XP_001877002.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164648495|gb|EDR12738.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1179

 Score =  896 bits (2315), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/1127 (43%), Positives = 694/1127 (61%), Gaps = 105/1127 (9%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
              R+   SY G++   V+  + D          + G  P+M+++ RC+L+   S +LV  
Sbjct: 119  EARERLTSYRGRMT--VKLCWTDISGQRHEMPKDCGLLPIMVRSVRCNLRSMSSAELVKH 176

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
             EE  E GGYF++NG ER+ R +ILP++N+ +S++R SF +R   YT  AV +RCVR DQ
Sbjct: 177  HEEPEEFGGYFVINGNERLIRYLILPRRNHVISLLRPSFSNRGPSYTQYAVQMRCVRPDQ 236

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
            +SVT  L+YL NGS  L F  + +EY++P+ +VLKALV  +D EIF  +     + Y+  
Sbjct: 237  TSVTNTLHYLSNGSAMLRFSWRKQEYVIPIMLVLKALVGASDKEIFEGVIM---QDYE-- 291

Query: 217  KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
                 +  +++RV+++L   +  ++ T  QCL+++G+ F+ V++  +  +  A    ++R
Sbjct: 292  -----NTFLTDRVELLLRSFKMFTMQTGEQCLEYLGDKFRVVLNLPEDWTNAAQGAWLLR 346

Query: 277  DYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
              I VHL    +KF +L+FML+KL+SLV  +  +DNPDS Q+QE+LLPG L  + +KE+L
Sbjct: 347  KMILVHLETPREKFRMLLFMLRKLYSLVSGSCCADNPDSPQHQEVLLPGSLYGMIIKERL 406

Query: 337  EDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
            E+ L   +  I  ++ N G   DF +    +KV+ K  +  IG+ +   L TG L + TG
Sbjct: 407  EEILNGIRMGISMDVRN-GVAVDFNDKRYFQKVVSK-VNFDIGSKLSNFLATGNLVSPTG 464

Query: 397  LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
            LDLQQ +G+T+ AE+LN+ R+IS FR +HRGA FA L+TT+VRKLLPE+WGFLCPVHTPD
Sbjct: 465  LDLQQASGFTIVAEKLNWQRYISHFRCIHRGAFFAELKTTTVRKLLPEAWGFLCPVHTPD 524

Query: 457  GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPK---LVKSGP 513
            G PCGLLNH++ +CR+ +                      + V  IP+L     + +   
Sbjct: 525  GSPCGLLNHLSRSCRITT--------------------TPLAVAHIPALLAAHGMTQVFT 564

Query: 514  PAV-----LSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGA 568
            P +     LSV LDGRV+G    S   ++  +LR  K      +P DLE+G VP+S GG 
Sbjct: 565  PTIDGRKNLSVQLDGRVIGWARPSVAAQLATNLRIWKTEGKHEVPLDLEIGLVPVSNGGQ 624

Query: 569  YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPA 627
            YPGL+LF++  + +RPV+ +    ++      +GPFEQV+M I C P+           +
Sbjct: 625  YPGLFLFSTTARMMRPVKYLGNGRDDQ-----VGPFEQVYMNIACIPE-----EIEEAVS 674

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH E  PT  LS++ANLTP+SD NQSPRN+YQCQM KQ+MG    AL+ R D KLY LQT
Sbjct: 675  THVEHEPTNFLSILANLTPFSDFNQSPRNIYQCQMGKQSMGTPATALQHRTDNKLYRLQT 734

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
             Q+P+VR   +  Y +D +P GTNAIVAV++YTGYDMEDAMILNKS+ +RG  +G +Y++
Sbjct: 735  GQSPVVRPALHNTYAMDSFPNGTNAIVAVISYTGYDMEDAMILNKSAHERGFGYGTVYKS 794

Query: 748  ETIDLSD--DGNKVDRGQKL-FRRNKDAKS----LHSVI---DSDGLPYVGQMIHPGEPY 797
            + IDL +    +K++    L F    D ++    LH+ +   D DGLP++G  +  G+P 
Sbjct: 795  QIIDLKEMRGASKLNSVPTLHFGLGNDIRTTGDKLHACLEFLDLDGLPFIGARLSSGDPI 854

Query: 798  CSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSS 856
             +  D TT   +    KG E  ++D V +   ++ +   QK +I  R TR+P+IGDKFSS
Sbjct: 855  AAYVDDTTGRTKFVRYKGDELGYIDEVRLLGFDAGDTELQKIHITLRITRSPVIGDKFSS 914

Query: 857  RHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKF 916
            RHGQKGVCSQ WP +DMPFS  +GM+PD+IINPHAFPSRMTI ML+ES+A K G++HG  
Sbjct: 915  RHGQKGVCSQKWPAVDMPFSE-SGMQPDVIINPHAFPSRMTIGMLVESMAGKAGAMHGLA 973

Query: 917  MDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIF 976
             DATPF  S           E  + ++  GE L   G+NY+G E +YSG+ G E   +I+
Sbjct: 974  QDATPFKFS-----------EEDTAINYFGEQLLAAGYNYYGNEPMYSGITGQEFAADIY 1022

Query: 977  IGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYL 1036
            IG VYYQRLRHMV DKFQVR+TG +D +TRQP+KGRKR GGIRFGEMERD+L+AHG ++L
Sbjct: 1023 IGVVYYQRLRHMVLDKFQVRTTGPVDPVTRQPVKGRKRAGGIRFGEMERDALIAHGTSFL 1082

Query: 1037 LHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQ--- 1093
            L DRL  CSDY  A VC  CGS+++  +    K +            P    C  C+   
Sbjct: 1083 LQDRLMNCSDYSTAWVCRTCGSLISLGYEDTLKPS-----------GPGGEYCRVCRAAS 1131

Query: 1094 -------------TSKG--METVAMPYVFRYLAAELAAMNIKITLQL 1125
                          SKG  ++ VA+PYVFRYL AELA+M I ++L++
Sbjct: 1132 EEEDERERQALATASKGGDLDVVAVPYVFRYLCAELASMGIAVSLEV 1178


>gi|340378888|ref|XP_003387959.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 [Amphimedon
            queenslandica]
          Length = 1143

 Score =  896 bits (2315), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/1164 (42%), Positives = 691/1164 (59%), Gaps = 111/1164 (9%)

Query: 10   EPLRELVRHHIESFDYMLDEGLS---------EMFD------------------------ 36
            E L+ L RHHIE+FD+ +DEGL          E+ D                        
Sbjct: 35   ESLQALTRHHIEAFDFAVDEGLKYAVEDLRSRELLDPRGQKVEIFIENAEIGYPTLPESN 94

Query: 37   -----------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHL 85
                        CR+  +SY   LM  V F  +   S V       GQ P+M+K+ RC L
Sbjct: 95   IHVKSVNIYPSECRERGVSYKAPLMLTVTF--MIEKSIVNTVNVPMGQVPIMVKSNRCRL 152

Query: 86   QGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDK 145
             G   ++LV   EE+ EMGGYFI+NG E++ R +I+P++NYP++++R S+  +    T+ 
Sbjct: 153  YGMSPEELVKHHEESEEMGGYFIINGNEKLLRMLIMPRRNYPIAIIRPSWIGKVPFSTEY 212

Query: 146  AVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHL 205
               +RCV+KDQ+   + L+Y  NGS+ L F    +++ + +  +LKAL+  +DL IF  +
Sbjct: 213  GCTMRCVKKDQTQCNMTLHYCSNGSLTLAFSRNKEQFYMSIIYILKALISVSDLFIFTEM 272

Query: 206  TCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSE 265
            T          KG      +   V  +L + Q   LT R   L+++G+ F+   +     
Sbjct: 273  T----------KGKEDDAFLKGCVAAMLHDCQTEVLT-RADALRYLGDRFRFKFNLPPWV 321

Query: 266  SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPG 325
            +   +   +IR++I VHL+ N DKFN+LIFM +K ++L +   +++  DS  NQEILL G
Sbjct: 322  TAEEICHELIRNHICVHLDKNTDKFNMLIFMARKTYALANGQCMAETADSPMNQEILLGG 381

Query: 326  HLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFN-LANIKKVMEKNPSKQIGTSIET 384
            HL  +YLK +L   L      ++      GK   FF   + +K+++E   +  I T +ET
Sbjct: 382  HLYLMYLKVQLLLSLVSLLLFVK------GKDGGFFEETSALKRILEPKKTVPIATIMET 435

Query: 385  MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPE 444
             L TG L T TGL+LQQ +G+++ A++LNF R+IS FRAVHRGA FA +++T VRKLLPE
Sbjct: 436  FLATGYLRTNTGLNLQQMSGFSIVADKLNFFRYISHFRAVHRGAFFAQMKSTEVRKLLPE 495

Query: 445  SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
            +WGF+CPVH+PDG PCGLLNH++S C+V +   +  N+R   K+ +S+       GMIP 
Sbjct: 496  AWGFICPVHSPDGAPCGLLNHLSSKCQVVT---TIPNVRKLPKLLSSL-------GMIPL 545

Query: 505  LPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS 564
            +  L      + L V+L+GRV+GV+ SS+  + V  LR LK +    +P  LE+GYVPLS
Sbjct: 546  VSPLEVPSSSSALDVILNGRVLGVVKSSDTPRFVRQLRHLKATRTQEVPSTLEIGYVPLS 605

Query: 565  LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNA 624
             GG +PG++LFT+P + +RPV N++     +  +ELIG FEQV+M+I   +       + 
Sbjct: 606  KGGQFPGIFLFTTPSRMMRPVINLA-----TNTMELIGSFEQVYMDIAVSES------DI 654

Query: 625  FP--ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKL 682
             P   TH+E+    +LS VA+LTP++D N SPRN+YQCQMAKQTMG    +   R D KL
Sbjct: 655  HPNVTTHKEVSDDSILSAVASLTPFTDFNPSPRNIYQCQMAKQTMGTPTHSFGHRGDNKL 714

Query: 683  YHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG 742
            Y LQTPQTP+VRT  Y +  +D YP GTNAIVAV+AYTGYDMEDA+++N++S++RG  H 
Sbjct: 715  YRLQTPQTPLVRTKFYDECDLDNYPLGTNAIVAVIAYTGYDMEDAIVINRASLERGFTHA 774

Query: 743  QIYQTETIDLSDDGNKVDRGQKL-FRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIY 801
             +Y+ E IDLS   N  DR     F      K  +  +D DGLP+VG ++   +P  S  
Sbjct: 775  TVYKNEFIDLSKKAN--DRNTMYQFGTLPSNKIAYERLDEDGLPHVGSLLEEDDPLYSYI 832

Query: 802  DKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQ 860
            D  +N       K  E  +V+ V +      + P ++ +I+ R  RNP IGDKF+SRHGQ
Sbjct: 833  DLASNRVHVERYKSREPAYVEEVKLLGSEKGDRPLERVSIKLRLNRNPAIGDKFASRHGQ 892

Query: 861  KGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDAT 920
            KGV S  WP  D+PF   +GM PD+I NPH FPSRMT+ M +ES+A K G+LHG   D+T
Sbjct: 893  KGVLSWQWPVEDLPFCE-SGMVPDIIFNPHGFPSRMTVGMWVESMAGKSGALHGITHDST 951

Query: 921  PFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPV 980
             F        GD      K   D  G +L   G+NY+G E +YSG+ G E   +IF G V
Sbjct: 952  SF------IFGD-----EKPAADYFGTLLTKAGYNYYGSERMYSGIDGREFEVDIFFGVV 1000

Query: 981  YYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDR 1040
            YYQRLRHMV+DK+QVR+TG +D +T QPIKGR +GGGIRFGEMERD L+AHGA++LL DR
Sbjct: 1001 YYQRLRHMVADKYQVRTTGPIDTLTHQPIKGRSKGGGIRFGEMERDCLIAHGASFLLQDR 1060

Query: 1041 LHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMET 1100
            L  CSD  ++ VCS CGS+L+   +   KR+  E   LP     +   C  C+    +ET
Sbjct: 1061 LLNCSDKSLSRVCSDCGSILSPICL---KRS--EDPALP---QEEMWACKVCEGGGHVET 1112

Query: 1101 VAMPYVFRYLAAELAAMNIKITLQ 1124
            +++PYVFRY  AELAAMNI I + 
Sbjct: 1113 ISVPYVFRYFVAELAAMNIGIKIN 1136


>gi|348558603|ref|XP_003465107.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like isoform 1
            [Cavia porcellus]
          Length = 1135

 Score =  895 bits (2314), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/1175 (42%), Positives = 680/1175 (57%), Gaps = 120/1175 (10%)

Query: 2    ARKKSADFEPLRELVRHHIESFDYMLDEGLSEMFD------------------------- 36
            A++K+A    L+EL R H++SF+Y + EGLS+                            
Sbjct: 29   AQQKAA----LQELTRAHVDSFNYAVCEGLSQAVQAIPSFEFAFKDERISLTIVDAVISP 84

Query: 37   -----------------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLK 79
                              CR  K +Y G+L  D+ +        V+++    G  P+M+K
Sbjct: 85   PTVPKGTICREPNVYPAECRGRKSTYRGRLTVDISWSVNGISRGVIKQFL--GYVPIMVK 142

Query: 80   TRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRR 139
            ++ C+L     + L+   EEA EMGGYFI+NG+E+V R +I+P++N+P+++VR  ++ R 
Sbjct: 143  SKLCNLHNLPPKALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIALVRPKWKSRG 202

Query: 140  EGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDL 199
             GYT   V I CVR D S+V + L+YL NG+V L F  + + + LP+G  LKALV  +D 
Sbjct: 203  PGYTQFGVSIHCVRGDHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDY 262

Query: 200  EIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVI 259
            +IF  L         KE+ +     VS+ ++I++ E      +T+ Q L ++GE F+  +
Sbjct: 263  QIFQELI------KGKEEDSFFRNSVSQMLRIVMEE----GGSTQKQVLNYLGECFRIKL 312

Query: 260  DGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQ 319
                  S    AE +    I +HL  N +KF+LL FM +KLF+L     + +NPDSL NQ
Sbjct: 313  SLPDWYSNEQAAEFLFNQCICIHLKSNTEKFHLLCFMTRKLFALAKGECLEENPDSLVNQ 372

Query: 320  EILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIG 379
            EIL PG L  ++LKEK+E WL   K  +    +      +  NL  I  +        + 
Sbjct: 373  EILTPGQLFLMFLKEKMEAWLVSVKIALDKRAQKTNVSINTENLMKIFSM-----GGDLT 427

Query: 380  TSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVR 439
               E +L TG L ++TGL   Q +G  V A++LNF+R++S FR VHRG  FA +RTT+VR
Sbjct: 428  RPFEYLLATGNLRSKTGLGFMQDSGLCVVADKLNFIRYLSHFRCVHRGGDFAKMRTTTVR 487

Query: 440  KLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGV 499
            +LLPESWGFLCPV+TPDG PCGL+NH+T+ C V + +             TSI  +L  +
Sbjct: 488  RLLPESWGFLCPVNTPDGAPCGLMNHLTAICEVVTQF----------AYTTSIPALLCSL 537

Query: 500  GMIPSLPKLVKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDD 555
            G+ P     V   P    S    VLLDG +VG +       V   LRR KV     IP  
Sbjct: 538  GVTP-----VDGAPHRPYSECYPVLLDGVMVGWVDKELAPGVADSLRRFKVLREKRIPPW 592

Query: 556  LEVGYVPLSLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCP 614
            +EV  +P++   + YPGL+LFT+P + VRPV+N+ L  EE     LIG  EQ+FM I   
Sbjct: 593  MEVALIPITGKPSLYPGLFLFTTPCRLVRPVQNLELGREE-----LIGTMEQLFMNIAIL 647

Query: 615  DGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQAL 674
            +        A   TH+E+ P  +LSV+AN  P+SDHNQSPRNMYQCQM+KQTMGF +   
Sbjct: 648  ED----EVCAGITTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMSKQTMGFPLLTY 703

Query: 675  KFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSS 734
            + R+D KLY LQTPQ+P+VR   Y  Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S
Sbjct: 704  QDRSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKAS 763

Query: 735  VDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPG 794
             +RG  HG +Y+TE I+LS+   + D       +  D + +   +D DGLP++G  +  G
Sbjct: 764  WERGFAHGSVYKTEFINLSEKIKQGDDSLVFGVKPGDPRVMQK-LDDDGLPFIGAKLQYG 822

Query: 795  EPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDK 853
            +PY    +  T        K  E+  VD + V    S +   K   I  R  RNP IGDK
Sbjct: 823  DPYYGYLNLNTGESYVMYYKSKENCIVDNIKVCSNESGSGKFKCICITMRVPRNPTIGDK 882

Query: 854  FSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLH 913
            F+SRHGQKG+ S+LWP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+A K  +LH
Sbjct: 883  FASRHGQKGILSRLWPAEDMPFTE-SGMMPDILFNPHGFPSRMTIGMLIESMAGKSAALH 941

Query: 914  GKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTC 973
            G   DATPF  S           E  S  +  GEML+  G+N++G E LYSG+ G EL  
Sbjct: 942  GLCHDATPFIFS-----------EENSASEYFGEMLKAAGYNFYGTERLYSGISGVELEA 990

Query: 974  EIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGA 1033
            +IFIG VYYQRLRHMVSDKFQVR+TG  D++T QPI GR   GGIRFGEMERD+LLAHG 
Sbjct: 991  DIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFGEMERDALLAHGT 1050

Query: 1034 AYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP---KKVTCH 1090
            ++LLHDRL  CSD  VA VC  CGS+L+     P           PP+ +    +K  C 
Sbjct: 1051 SFLLHDRLFNCSDRSVAHVCVECGSLLSPLLEKP-----------PPSWSAMRNRKYNCT 1099

Query: 1091 ACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
             C  S  ++TV++PYVFRY  AELAAMNIK+ L +
Sbjct: 1100 VCNRSDTIDTVSVPYVFRYFVAELAAMNIKVKLDV 1134


>gi|348558605|ref|XP_003465108.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like isoform 2
            [Cavia porcellus]
          Length = 1079

 Score =  895 bits (2314), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/1133 (44%), Positives = 676/1133 (59%), Gaps = 92/1133 (8%)

Query: 2    ARKKSADFEPLRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAG 61
            A++K+A    L+EL R H++SF+Y + EGLS+      Q  IS++           ++  
Sbjct: 29   AQQKAA----LQELTRAHVDSFNYAVCEGLSQAV----QVDISWS-----------VNGI 69

Query: 62   SPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVIL 121
            S  V ++F  G  P+M+K++ C+L     + L+   EEA EMGGYFI+NG+E+V R +I+
Sbjct: 70   SRGVIKQF-LGYVPIMVKSKLCNLHNLPPKALIEHHEEAEEMGGYFIINGIEKVIRMLIM 128

Query: 122  PKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKE 181
            P++N+P+++VR  ++ R  GYT   V I CVR D S+V + L+YL NG+V L F  + + 
Sbjct: 129  PRRNFPIALVRPKWKSRGPGYTQFGVSIHCVRGDHSAVNMNLHYLENGTVMLNFIYRKEL 188

Query: 182  YLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSL 241
            + LP+G  LKALV  +D +IF  L         KE+ +     VS+ ++I++ E      
Sbjct: 189  FFLPLGFALKALVSFSDYQIFQELI------KGKEEDSFFRNSVSQMLRIVMEE----GG 238

Query: 242  TTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLF 301
            +T+ Q L ++GE F+  +      S    AE +    I +HL  N +KF+LL FM +KLF
Sbjct: 239  STQKQVLNYLGECFRIKLSLPDWYSNEQAAEFLFNQCICIHLKSNTEKFHLLCFMTRKLF 298

Query: 302  SLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFF 361
            +L     + +NPDSL NQEIL PG L  ++LKEK+E WL   K  +    +      +  
Sbjct: 299  ALAKGECLEENPDSLVNQEILTPGQLFLMFLKEKMEAWLVSVKIALDKRAQKTNVSINTE 358

Query: 362  NLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFF 421
            NL  I  +        +    E +L TG L ++TGL   Q +G  V A++LNF+R++S F
Sbjct: 359  NLMKIFSM-----GGDLTRPFEYLLATGNLRSKTGLGFMQDSGLCVVADKLNFIRYLSHF 413

Query: 422  RAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGN 481
            R VHRG  FA +RTT+VR+LLPESWGFLCPV+TPDG PCGL+NH+T+ C V + +     
Sbjct: 414  RCVHRGGDFAKMRTTTVRRLLPESWGFLCPVNTPDGAPCGLMNHLTAICEVVTQF----- 468

Query: 482  IRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLS----VLLDGRVVGVIPSSEIEKV 537
                    TSI  +L  +G+ P     V   P    S    VLLDG +VG +       V
Sbjct: 469  -----AYTTSIPALLCSLGVTP-----VDGAPHRPYSECYPVLLDGVMVGWVDKELAPGV 518

Query: 538  VAHLRRLKVSAASVIPDDLEVGYVPLS-LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQ 596
               LRR KV     IP  +EV  +P++     YPGL+LFT+P + VRPV+N+ L  EE  
Sbjct: 519  ADSLRRFKVLREKRIPPWMEVALIPITGKPSLYPGLFLFTTPCRLVRPVQNLELGREE-- 576

Query: 597  NIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656
               LIG  EQ+FM I   +        A   TH+E+ P  +LSV+AN  P+SDHNQSPRN
Sbjct: 577  ---LIGTMEQLFMNIAILED----EVCAGITTHQELFPHSLLSVIANFIPFSDHNQSPRN 629

Query: 657  MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
            MYQCQM+KQTMGF +   + R+D KLY LQTPQ+P+VR   Y  Y +D YP GTNAIVAV
Sbjct: 630  MYQCQMSKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAV 689

Query: 717  LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLH 776
            ++YTGYDMEDAMI+NK+S +RG  HG +Y+TE I+LS+   + D       +  D + + 
Sbjct: 690  ISYTGYDMEDAMIVNKASWERGFAHGSVYKTEFINLSEKIKQGDDSLVFGVKPGDPRVMQ 749

Query: 777  SVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQ 836
              +D DGLP++G  +  G+PY    +  T        K  E+  VD + V    S +   
Sbjct: 750  K-LDDDGLPFIGAKLQYGDPYYGYLNLNTGESYVMYYKSKENCIVDNIKVCSNESGSGKF 808

Query: 837  KA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSR 895
            K   I  R  RNP IGDKF+SRHGQKG+ S+LWP  DMPF+  +GM PD++ NPH FPSR
Sbjct: 809  KCICITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTE-SGMMPDILFNPHGFPSR 867

Query: 896  MTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFN 955
            MTI ML+ES+A K  +LHG   DATPF  S           E  S  +  GEML+  G+N
Sbjct: 868  MTIGMLIESMAGKSAALHGLCHDATPFIFS-----------EENSASEYFGEMLKAAGYN 916

Query: 956  YHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRG 1015
            ++G E LYSG+ G EL  +IFIG VYYQRLRHMVSDKFQVR+TG  D++T QPI GR   
Sbjct: 917  FYGTERLYSGISGVELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQ 976

Query: 1016 GGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREI 1075
            GGIRFGEMERD+LLAHG ++LLHDRL  CSD  VA VC  CGS+L+     P        
Sbjct: 977  GGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVECGSLLSPLLEKP-------- 1028

Query: 1076 GGLPPARAP---KKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
               PP+ +    +K  C  C  S  ++TV++PYVFRY  AELAAMNIK+ L +
Sbjct: 1029 ---PPSWSAMRNRKYNCTVCNRSDTIDTVSVPYVFRYFVAELAAMNIKVKLDV 1078


>gi|156845523|ref|XP_001645652.1| hypothetical protein Kpol_541p37 [Vanderwaltozyma polyspora DSM
            70294]
 gi|156116318|gb|EDO17794.1| hypothetical protein Kpol_541p37 [Vanderwaltozyma polyspora DSM
            70294]
          Length = 1204

 Score =  895 bits (2312), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/1130 (44%), Positives = 693/1130 (61%), Gaps = 102/1130 (9%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
              RQ   SY GKL+  +++   D G  V+ +  + G  P+ML++ RCHL       LV  
Sbjct: 125  EARQRLTSYRGKLLMKLKWSVND-GEEVLTDMRDGGGLPIMLQSNRCHLNKLSPYDLVQR 183

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
            KEE+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R   YT   + IR VR DQ
Sbjct: 184  KEESDELGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFANRGASYTQYGIQIRSVRNDQ 243

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
            +S T  L+YL +G V   F  +  EYL+P  ++LKAL DT+D EIF+             
Sbjct: 244  TSQTNVLHYLNDGQVTFRFSWRKNEYLIPAVMILKALCDTSDREIFD------------- 290

Query: 217  KGAVGSPL----VSERVKIILAEVQDL--SLTTRLQCLQHIGEHFQPVIDGLQSESYYAV 270
             G +GS +    +++R++++L   +     L  R Q LQ+IG+ F+ V      +S Y V
Sbjct: 291  -GIIGSDIKNSFLTDRLELLLRGFKKRYPQLQNRTQVLQYIGDKFRVVFQASPDKSDYDV 349

Query: 271  AETVIRDYIFVHLN--DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
             + V+   + VHL   +N DK  +L+FM++KL+SLV      DNPD+ Q+QE+LL G L 
Sbjct: 350  GQEVLNRIVLVHLGTGNNEDKSRMLMFMIRKLYSLVAGECCPDNPDATQHQEVLLGGFLY 409

Query: 329  TIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKT 388
             + LKEK++++L+     I+ +I N G   +F +   + +V+ +  ++ IG+ ++  L T
Sbjct: 410  GMILKEKMDEYLQSIIAQIRADI-NRGMAINFKDRKYMSRVLMR-VNENIGSKLQYFLST 467

Query: 389  GRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGF 448
            G L +Q+GLDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGF
Sbjct: 468  GNLVSQSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGF 527

Query: 449  LCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKL 508
            LCPVHTPDG PCGLLNH    CR+++         D SK    I  +L  +G+ P+  + 
Sbjct: 528  LCPVHTPDGSPCGLLNHFAHKCRISTIQS------DVSK----IPELLYSLGVTPA-SQT 576

Query: 509  VKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV-IPDDLEVGYVPLSLGG 567
            V +GP ++  V LDG++VG +   E + V   LR  KV   +  +P DLE+GYVP S  G
Sbjct: 577  VAAGP-SLCCVQLDGKIVGWVSHDEGKIVADTLRFWKVEGKTPGLPLDLEIGYVPPSSSG 635

Query: 568  AYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFP 626
             YPGLY+F    + +RPVR + L  E+     ++GPFEQV+M I   P   +        
Sbjct: 636  QYPGLYIFGGHSRMMRPVRYLPLGKED-----IVGPFEQVYMNIAVTPQEIENNIH---- 686

Query: 627  ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQ 686
             +H E  PT +LS++ANLTP+SD NQSPRNMYQCQM KQTMG    AL  R+D KLY LQ
Sbjct: 687  -SHVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQ 745

Query: 687  TPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQ 746
            + QTPIV+ N Y  YG+D +P GTNA+VAV++YTGYDM+DAMI+NKS+ +RG  +G +Y+
Sbjct: 746  SGQTPIVKANLYDDYGMDNFPNGTNAVVAVISYTGYDMDDAMIINKSADERGFGYGTMYK 805

Query: 747  TETIDLSDDGNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT 804
             E +DLS + ++ D   + F    D   K     +D DGLPY+G  +  G+P C+ +D T
Sbjct: 806  VEKVDLSMNRSRGDPITQHFGFGPDEWPKEWLEKLDEDGLPYIGTYVEEGDPICAYFDDT 865

Query: 805  TNSWRTNSRKGSESVFVDYVAV--DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKG 862
             N  +  +   SE  +++ V +  D  N     Q  +I++R  R P IGDKFSSRHGQKG
Sbjct: 866  LNKTKIKTYHSSEPAYIEEVNLIGDESNKFQELQTVSIKYRIRRTPQIGDKFSSRHGQKG 925

Query: 863  VCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPF 922
            VCS+ WP IDMPFS  TG++PD+IINPHAFPSRMTI M +ES+A K G+LHG   DATP+
Sbjct: 926  VCSRKWPTIDMPFS-ETGIQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGTAHDATPW 984

Query: 923  ANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYY 982
                         DES +  D  G+ L   G+NYHG E +YSG  G EL  +I+IG VYY
Sbjct: 985  T-----------FDESDTPADYFGDQLLKAGYNYHGNEPMYSGATGEELRADIYIGVVYY 1033

Query: 983  QRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLH 1042
            QRLRHMV+DKFQVRSTG ++ +T QP+KGRKR GGIR GEMERD+L+ HG ++LL DRL 
Sbjct: 1034 QRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIGHGTSFLLQDRLL 1093

Query: 1043 TCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPAR----------APKKVTCHAC 1092
             CSDY    VC  CGS+LT       ++++ +IG +   R          A K ++ +  
Sbjct: 1094 NCSDYTQTAVCRECGSILTT------QQSVPKIGSVSTVRCRRCAIDFDEAKKSLSKYQT 1147

Query: 1093 QTSK-------------------GME--TVAMPYVFRYLAAELAAMNIKI 1121
               K                   G E  TVA+P+V +YL +EL AM I++
Sbjct: 1148 DDEKIYIDDSEIWEDGQGNKFVGGGETTTVAIPFVLKYLDSELNAMGIRM 1197


>gi|296223273|ref|XP_002807565.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
            RPA2 [Callithrix jacchus]
          Length = 1165

 Score =  895 bits (2312), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/1165 (42%), Positives = 678/1165 (58%), Gaps = 116/1165 (9%)

Query: 12   LRELVRHHIESFDYMLDEGLS--------------------EMFD--------------- 36
            L+EL R H+ESF+Y + EGL                      + D               
Sbjct: 65   LQELTRAHVESFNYAVHEGLGLAVQAIPPFEFAFKDQRISFTILDAVISPPTVPKGTICK 124

Query: 37   -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
                    CR  + +Y GKL  DV +        ++++  + G  P+M+K++ C+L    
Sbjct: 125  EASVYPAECRGRRSTYRGKLTVDVNWAVNGISKGIIKQ--SLGYVPIMVKSKLCNLHNLP 182

Query: 90   SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
             Q L+   EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R  ++ R  GYT   V +
Sbjct: 183  PQALIQHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSM 242

Query: 150  RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
             CV+++ S+V + L+YL NG+V L F  + + + LP+G  LKALV  +D +IF  L    
Sbjct: 243  HCVKEEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 299

Query: 210  DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
                 KE  +     VS+ ++I++ E      +T+ Q L ++GE F+  ++         
Sbjct: 300  ---KGKEDDSFFRNSVSQMLRIVMEE----GCSTQKQVLNYLGECFRVKLNVPDWYPNEQ 352

Query: 270  VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
             AE +    I +HL  N +KF +L  M +KLF+L     + DNPDSL NQE+L PG L  
Sbjct: 353  AAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFL 412

Query: 330  IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
            ++LKEKLE WL   K +   + +      +  NL  I  +        +    E +L TG
Sbjct: 413  MFLKEKLEGWLVSIKIVFDKKAQKTNLSMNTDNLMKIFTM-----GLDLTKPFEYLLATG 467

Query: 390  RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
             L ++TGL L Q +G  V A++LNF+R++S FR VHRG+ FA +RTT+VR+LLPESWGFL
Sbjct: 468  NLRSKTGLGLLQASGLCVVADKLNFIRYLSHFRCVHRGSDFAKMRTTTVRRLLPESWGFL 527

Query: 450  CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
            CPVHTPDGEPCGL+NH+T+ C V + +             TSI  +L  +G+ P     V
Sbjct: 528  CPVHTPDGEPCGLMNHLTAVCEVVTQF----------VYTTSIPALLCNLGVTP-----V 572

Query: 510  KSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS- 564
               P    S    VLLDG +VG +       +   LR  KV     IP  +EV  +P++ 
Sbjct: 573  DGAPHQPYSECYPVLLDGVMVGWVDKELALGIADSLRHFKVLREKRIPPWMEVVLIPMTG 632

Query: 565  LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNA 624
                YPGL+LFT+P + +RPV+N+ L  EE     LIG  EQ+FM +   +        A
Sbjct: 633  KPSLYPGLFLFTTPCRLIRPVQNLELGKEE-----LIGTMEQIFMNVAIYED----EVFA 683

Query: 625  FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
               TH+E+ P  +LSV+AN  P+SDHNQSPRNMYQCQM KQTMGF +   + R+D KLY 
Sbjct: 684  GVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYR 743

Query: 685  LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI 744
            LQTPQ+P+VR + Y  Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG  HG +
Sbjct: 744  LQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSV 803

Query: 745  YQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT 804
            Y++E IDLS+   + D       +  D + L   +D DGLP++G  +  G+PY S  +  
Sbjct: 804  YKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQK-LDDDGLPFIGAKLQYGDPYYSYLNLN 862

Query: 805  TNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGV 863
            T        K  E+  VD + V   ++ +   K   I  R  RNP IGDKF+SRHGQKG+
Sbjct: 863  TGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGI 922

Query: 864  CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFA 923
             S+LWP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+A K  +LHG   DATPF 
Sbjct: 923  LSRLWPVEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFI 981

Query: 924  NSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQ 983
             S           E  S ++  GEML+  G+N++G E LYSG+ G EL  +IFIG VYYQ
Sbjct: 982  FS-----------EENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQ 1030

Query: 984  RLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHT 1043
            RLRHMVSDKFQVR+TG  D++T QPI GR   GGIRFGEMERD+LLAHG ++LLHDRL  
Sbjct: 1031 RLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFN 1090

Query: 1044 CSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP---KKVTCHACQTSKGMET 1100
            CSD  VA VC  CGS+L+     P           PP+ +    +K  C  C  S  ++T
Sbjct: 1091 CSDRSVAHVCVKCGSLLSPLLEKP-----------PPSWSAMRNRKYNCTLCHRSDTIDT 1139

Query: 1101 VAMPYVFRYLAAELAAMNIKITLQL 1125
            V++PYVFRY  AELAAMNIK+ L +
Sbjct: 1140 VSVPYVFRYFVAELAAMNIKVKLDV 1164


>gi|332257260|ref|XP_003277727.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 3
            [Nomascus leucogenys]
          Length = 1070

 Score =  895 bits (2312), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/1097 (44%), Positives = 658/1097 (59%), Gaps = 74/1097 (6%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR  + +Y GKL AD+ +        ++++    G  P+M+K++ C+L     Q L+   
Sbjct: 38   CRGRRSTYRGKLTADINWAVNGISKGIIKQFL--GYVPIMVKSKLCNLHNLPPQALIEHH 95

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R  ++ R  GYT   V + CVR++ S
Sbjct: 96   EEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSVHCVREEHS 155

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            +V + L+YL NG+V L F  + + + LP+G  LKALV  +D +IF  L         KE 
Sbjct: 156  AVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI------KGKED 209

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
             +     VS+ ++I++ E      +T+ Q L ++GE F+  ++          AE +   
Sbjct: 210  DSFLRNSVSQMLRIVMEE----GCSTQKQVLNYLGECFRVKLNVPDWYPNEQAAEFLFNQ 265

Query: 278  YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
             I +HL  N +KF +L  M +KLF+L     + DNPDSL NQE+L PG L  ++LKEKLE
Sbjct: 266  CICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKEKLE 325

Query: 338  DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
             WL   K     + +      +  NL  I  +        +    E +  TG L ++TGL
Sbjct: 326  GWLVSIKIAFDKKAQKTNVSMNTDNLMRIFTM-----GIDLTKPFEYLFATGNLRSKTGL 380

Query: 398  DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDG 457
             L Q +G  V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGFLCPVHTPDG
Sbjct: 381  GLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFLCPVHTPDG 440

Query: 458  EPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVL 517
            EPCGL+NH+T+ C V + +              SI  +L  +G+ P     V   P    
Sbjct: 441  EPCGLMNHLTAVCEVVTQF----------VYTASIPALLCNLGVTP-----VDGAPHRPY 485

Query: 518  S----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS-LGGAYPGL 572
            S    VLLDG +VG +       +   LRR KV     IP  +EV  +P++     YPGL
Sbjct: 486  SECYPVLLDGVMVGWVDKEIAPGIADSLRRFKVLREKRIPPWMEVVLIPMTGKPSLYPGL 545

Query: 573  YLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEI 632
            +LFT+P + VRPV+N+ +  EE     LIG  EQ+FM +   +        A   TH+E+
Sbjct: 546  FLFTTPCRLVRPVQNLEMGKEE-----LIGTMEQIFMNVAIFED----EVFAGVTTHQEL 596

Query: 633  HPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPI 692
             P  +LSV+AN  P+SDHNQSPRNMYQCQM KQTMGF +   + R+D KLY LQTPQ+P+
Sbjct: 597  FPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPL 656

Query: 693  VRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDL 752
            VR + Y  Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG  HG +Y++E IDL
Sbjct: 657  VRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDL 716

Query: 753  SDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNS 812
            S+   + D       +  D + L   +D DGLP++G  +  G+PY S  +  T       
Sbjct: 717  SEKIKQGDSSLVFGIKPGDPRVLQK-LDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMY 775

Query: 813  RKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDI 871
             K  E+  VD + V   ++ +   K   I  R  RNP IGDKF+SRHGQKG+ S+LWP  
Sbjct: 776  YKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAE 835

Query: 872  DMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNG 931
            DMPF+  +GM PD++ NPH FPSRMTI ML+ES+A K  +LHG   DATPF  S      
Sbjct: 836  DMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFS------ 888

Query: 932  DTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSD 991
                 E  S ++  GEML+  G+N+HG E LYSG+ G EL  +IFIG VYYQRLRHMVSD
Sbjct: 889  -----EENSALEYFGEMLKAAGYNFHGTERLYSGISGLELEADIFIGVVYYQRLRHMVSD 943

Query: 992  KFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVAD 1051
            KFQVR+TG  D++T QPI GR   GGIRFGEMERD+LLAHG ++LLHDRL  CSD  VA 
Sbjct: 944  KFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAH 1003

Query: 1052 VCSLCGSVLTATFIHPQKRAIREIGGLPPARAP---KKVTCHACQTSKGMETVAMPYVFR 1108
            VC  CGS+L+     P           PP+ +    +K  C  C  S  ++TV++PYVFR
Sbjct: 1004 VCVKCGSLLSPLLEKP-----------PPSWSAMRNRKYNCTLCNRSDTIDTVSVPYVFR 1052

Query: 1109 YLAAELAAMNIKITLQL 1125
            Y  AELAAMNIK+ L +
Sbjct: 1053 YFVAELAAMNIKVKLDV 1069


>gi|338713979|ref|XP_003362991.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 [Equus
            caballus]
          Length = 1079

 Score =  895 bits (2312), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1124 (43%), Positives = 670/1124 (59%), Gaps = 90/1124 (8%)

Query: 12   LRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNF 71
            L+EL R H+ESF+Y + EGLS    H  QA IS++              G P    +   
Sbjct: 35   LQELTRAHVESFNYAVREGLS----HAVQADISWSVN------------GIPKGIIKQFL 78

Query: 72   GQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMV 131
            G  P+M+K++ C+L     + L+   EEA EMGGYFI+NG+E+V R +I+P++N+P+++ 
Sbjct: 79   GYVPIMVKSKLCNLYNLPPRALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIALT 138

Query: 132  RSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLK 191
            R  ++ R  GYT   V + CVR++ S+V + L+YL NG+V L F  + + + LP+G  LK
Sbjct: 139  RPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFVYRKELFFLPLGFALK 198

Query: 192  ALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHI 251
            ALV  +D +IF  L         KE  +     VS+ ++I+  E      +T+ Q L ++
Sbjct: 199  ALVSFSDYQIFQELI------KGKEDDSFFRNSVSQMLRIVTEE----GCSTQKQVLNYL 248

Query: 252  GEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSD 311
            GE F+  ++          AE +    I +HL  N +KF +L  M +KLF+L     + +
Sbjct: 249  GERFRVKLNLPDWYPDAQAAEFLFNQCICIHLKSNTEKFYVLCLMTRKLFALAKGECMEE 308

Query: 312  NPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDF-FNLANIKKVM 370
            NPDSL NQE+L PG L  ++LKEK+E WL      I+  ++   +K D   N  N+ K+ 
Sbjct: 309  NPDSLVNQEVLTPGQLFLMFLKEKMEAWLVS----IKIALDKKAQKTDVSINTDNLMKIF 364

Query: 371  EKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASF 430
              N    +    E +L TG L ++TGL   Q +G  V A++LNF+R++S FR VHRGA F
Sbjct: 365  --NLGTDLTKPFEYLLATGNLRSKTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADF 422

Query: 431  AGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRT 490
            A +RTT+VR+LLPESWGFLCPVHTPDGEPCGL+NH+T+ C V + +              
Sbjct: 423  AKMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAICEVVTQF----------AYTA 472

Query: 491  SILRVLIGVGMIPSLPKLVKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKV 546
            S+  +L  +G+ P     V   P    S    VLLDG +VG +       +   LR  KV
Sbjct: 473  SVPALLCSLGVTP-----VDGAPHRPYSECYPVLLDGVMVGWVDKELAPSIADSLRHFKV 527

Query: 547  SAASVIPDDLEVGYVPLS-LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFE 605
                 IP  +EV  +P++     YPGL+LFT+P + VRPV+N+ L  EE     LIG  E
Sbjct: 528  LREKRIPPWMEVALIPMTGKPSLYPGLFLFTTPCRLVRPVQNLELGREE-----LIGTME 582

Query: 606  QVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQ 665
            Q+FM I   +        A   TH+E+ P  +LSV+AN  P+SDHNQSPRNMYQCQM KQ
Sbjct: 583  QIFMNIAIFED----EVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQ 638

Query: 666  TMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDME 725
            TMGF +   + R+D KLY LQTPQ+P+VR   Y  Y +D YP GTNAIVAV++YTGYDME
Sbjct: 639  TMGFPLLTYRDRSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDME 698

Query: 726  DAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLP 785
            DAMI+NK+S +RG  HG +Y++E IDLS+   + D       +  D + +   +D DGLP
Sbjct: 699  DAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDDSLVFGVKPGDPRIVQK-LDDDGLP 757

Query: 786  YVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRH 844
            ++G  +  G+PY S  +  T        K  E+  VD + V   ++ +   K   I  R 
Sbjct: 758  FIGAQLQYGDPYYSYLNLNTGESFVMYYKSKENCIVDNIKVCSNDTGSGKFKCICITMRV 817

Query: 845  TRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLES 904
             RNP IGDKF+SRHGQKG+ S+LWP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES
Sbjct: 818  PRNPTIGDKFASRHGQKGILSRLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIES 876

Query: 905  VAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYS 964
            +A K  +LHG   DATPF  S           E  S ++  GEML+  G+N++G E LYS
Sbjct: 877  MAGKSAALHGLCHDATPFIFS-----------EENSALEYFGEMLKAAGYNFYGTERLYS 925

Query: 965  GVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEME 1024
            G+ G EL  +IFIG VYYQRLRHMVSDKFQVR+TG  D++T QPI GR   GGIRFGEME
Sbjct: 926  GISGVELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFGEME 985

Query: 1025 RDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP 1084
            RD+LLAHG ++LLHDRL  CSD  VA VC  CGS+L+     P           PP+ + 
Sbjct: 986  RDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKP-----------PPSWSA 1034

Query: 1085 ---KKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
               +K  C  C  S  ++TV++PYVFRY  AELAAMNIK+ L +
Sbjct: 1035 MRNRKYNCTLCNRSDTIDTVSVPYVFRYFVAELAAMNIKVKLDV 1078


>gi|403303875|ref|XP_003942544.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 3
            [Saimiri boliviensis boliviensis]
          Length = 1070

 Score =  895 bits (2312), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/1097 (44%), Positives = 661/1097 (60%), Gaps = 74/1097 (6%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR  + +Y GKL AD+ +        ++++  + G  P+M+K++ C+L     Q L+   
Sbjct: 38   CRGRRSTYRGKLTADINWAVNGISKGIIKQ--SLGYVPIMVKSKLCNLYNLPPQALIEHH 95

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R  ++ R  GYT   V + CVR++ S
Sbjct: 96   EEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSMHCVREEHS 155

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            +V + L+YL NG+V L F  + + + LP+G  LKALV  +D +IF  L         KE 
Sbjct: 156  AVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI------KGKED 209

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
             +     VS+ ++I++ E      +T+ Q L ++GE F+  ++          AE ++  
Sbjct: 210  DSFFRNSVSQMLRIVMEE----GCSTQKQVLNYLGECFRVKLNVPDWYPNEQAAEFLLNQ 265

Query: 278  YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
             I +HL  N +KF +L  M +KLF+L     + DNPDSL NQE+L PG L  ++LKEKLE
Sbjct: 266  CICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKEKLE 325

Query: 338  DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
             WL   K     + +      +  NL  I  +        +    E +L TG L ++TGL
Sbjct: 326  GWLVSIKIAFDKKAQKTNVSMNTDNLMKIFTM-----GLDLTKPFEYLLATGNLRSKTGL 380

Query: 398  DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDG 457
             L Q +G  V A++LNF+R++S FR VHRG+ FA +RTT+VR+LLPESWGFLCPVHTPDG
Sbjct: 381  GLLQESGLCVVADKLNFIRYLSHFRCVHRGSDFAKMRTTTVRRLLPESWGFLCPVHTPDG 440

Query: 458  EPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVL 517
            EPCGL+NH+T+ C V + +             TSI  +L  +G+ P     V   P    
Sbjct: 441  EPCGLMNHLTAVCEVVTQF----------VYTTSIPALLCNLGVTP-----VDGAPHRPY 485

Query: 518  S----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS-LGGAYPGL 572
            S    VLLDG +VG +       +   LR  KV     IP  +EV  +P++     YPGL
Sbjct: 486  SECYPVLLDGVMVGWVDKELASGIADSLRHFKVLREKRIPPWMEVVLIPMTGKPSLYPGL 545

Query: 573  YLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEI 632
            +LFT+P + VRPV+N+ L  EE     LIG  EQ+FM +   +        A   TH+E+
Sbjct: 546  FLFTTPCRLVRPVQNLELGKEE-----LIGTMEQIFMNVAIYED----EVFAGVTTHQEL 596

Query: 633  HPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPI 692
             P  +LSV+AN  P+SDHNQSPRNMYQCQM KQTMGF +   + R+D KLY LQTPQ+P+
Sbjct: 597  FPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPL 656

Query: 693  VRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDL 752
            VR + Y  Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG  HG +Y++E IDL
Sbjct: 657  VRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDL 716

Query: 753  SDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNS 812
            S+   + D       +  D + L   +D DGLP++G  +  G+PY S  +  T       
Sbjct: 717  SEKIKQGDSSLVFGIKLGDPRVLQK-LDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMY 775

Query: 813  RKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDI 871
             K  E+  VD + V   ++ +   K   I  R  RNP IGDKF+SRHGQKG+ S+LWP  
Sbjct: 776  YKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPVE 835

Query: 872  DMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNG 931
            DMPF+  +GM PD++ NPH FPSRMTI ML+ES+A K  +LHG   DATPF  S      
Sbjct: 836  DMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFS------ 888

Query: 932  DTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSD 991
                 E  S ++  GEML+  G+N++G E LYSG+ G EL  +IFIG VYYQRLRHMVSD
Sbjct: 889  -----EENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSD 943

Query: 992  KFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVAD 1051
            KFQVR+TG  D++T QPI GR   GGIRFGEMERD+LLAHG ++LLHDRL  CSD  VA 
Sbjct: 944  KFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAH 1003

Query: 1052 VCSLCGSVLTATFIHPQKRAIREIGGLPPARAP---KKVTCHACQTSKGMETVAMPYVFR 1108
            VC  CGS+L+     P           PP+ +    +K  C  C  S  ++TV++PYVFR
Sbjct: 1004 VCVKCGSLLSPLLEKP-----------PPSWSAMRNRKYNCTLCHRSDTIDTVSVPYVFR 1052

Query: 1109 YLAAELAAMNIKITLQL 1125
            Y  AELAAMNIK+ L +
Sbjct: 1053 YFVAELAAMNIKVKLDV 1069


>gi|58268448|ref|XP_571380.1| DNA-directed RNA polymerase i polypeptide 2 [Cryptococcus neoformans
            var. neoformans JEC21]
 gi|134112740|ref|XP_774913.1| hypothetical protein CNBF0780 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|50257561|gb|EAL20266.1| hypothetical protein CNBF0780 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|57227615|gb|AAW44073.1| DNA-directed RNA polymerase i polypeptide 2, putative [Cryptococcus
            neoformans var. neoformans JEC21]
          Length = 1193

 Score =  894 bits (2310), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/1118 (43%), Positives = 681/1118 (60%), Gaps = 85/1118 (7%)

Query: 38   CRQAKISYTGKLMADVEFQYLD--AGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
             R+   +Y  KL  ++++   D         E    G  PVM+++ RC+LQG  + +L+ 
Sbjct: 130  ARERLATYRSKLTVNIKWTVTDEDGNRKEFEEIKECGLLPVMVRSIRCNLQGLPATELIK 189

Query: 96   LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
              EE+   GGYFI+NG E++ R +++P+++ P+++ R SF  R   YT     IRCVR D
Sbjct: 190  HSEESTSFGGYFIVNGNEKIIRYLVVPRRHNPINLYRPSFAKRGASYTPYGCQIRCVRPD 249

Query: 156  QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
            +++ T  ++YL NG   L F  +  EY++P+ ++LKALVD +D EIF  L          
Sbjct: 250  ETACTNTIHYLSNGGATLRFAWRKVEYMIPLMLILKALVDASDKEIFEGLI--------- 300

Query: 216  EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
             +G   +  +++RV+++L   +   L T  QCL ++GE F+ V++     S   V   ++
Sbjct: 301  -QGEYDNTFLTDRVELLLRGQKSWGLHTGAQCLDYLGEKFRVVLNVPDDWSNVQVGGYLL 359

Query: 276  RDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEK 335
            R  + VHL    DKF +L+FML+KL+S V   +  DNPDS Q+ E+LLPG L  + +KE+
Sbjct: 360  RKVVLVHLPAPRDKFRMLLFMLRKLYSQVSGATCPDNPDSPQHHEVLLPGFLYGMIIKER 419

Query: 336  LEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQT 395
             +D L   K  IQ ++ + GK   F +      V+ K  +  IG+ +   L TG L + T
Sbjct: 420  FDDCLNAVKSQIQLDLRD-GKARSFMDPKYFTSVLSKT-NWDIGSKLSYFLATGNLVSPT 477

Query: 396  GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTP 455
            GLDLQQ +G+T+ AE+LNF R++S FR +HRGA FA L+TT+VRKL+PESWGFLCPVHTP
Sbjct: 478  GLDLQQTSGFTIVAEKLNFYRYLSHFRCIHRGAFFAELKTTTVRKLMPESWGFLCPVHTP 537

Query: 456  DGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGV-GMIPSLPKLVKSGPP 514
            DG PCGLLNH++ TC++ +           S +  S +  L+   GM       +     
Sbjct: 538  DGSPCGLLNHLSHTCQIVT-----------SSLDVSHIPALLSAQGMTQVFASSIDG--R 584

Query: 515  AVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYL 574
             ++ + LDG+V+G     + +++   LR+LK  A S +P DLE+GYVP++ GG YPGLYL
Sbjct: 585  RMVCIQLDGKVIGYASPMKAKQLANRLRKLKTEADSKVPLDLEIGYVPVTKGGQYPGLYL 644

Query: 575  FTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHP 634
            F S  + +RPV  +     E+  ++ +G FEQV+M++               ++H E+ P
Sbjct: 645  FASRSRMMRPVTYL-----ENGKLDHLGSFEQVYMDVAITKE----EIEKGVSSHVELDP 695

Query: 635  TGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVR 694
            T MLSV+AN+TP+SD NQSPRNMYQCQM KQ+MG    A+  R D K+Y LQ+ QTP+VR
Sbjct: 696  TSMLSVIANMTPFSDFNQSPRNMYQCQMGKQSMGTPSTAISKRTDNKMYRLQSGQTPVVR 755

Query: 695  TNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD 754
             + + +YG D +P GTNAIVAV++YTGYDMEDAMILNKS+ +RG  +G +Y+ +  DL  
Sbjct: 756  PDLHNQYGFDNFPNGTNAIVAVISYTGYDMEDAMILNKSAHERGFGYGTVYKADIFDLKG 815

Query: 755  --DGNKVDRGQKLFRRNKDAKSLH---SVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWR 809
                ++  +    F   +D K  H   ++I  DGLP +G  +  G+P C+  D TT   +
Sbjct: 816  VPGASRSAKPTLHFGLGRDVKEDHDARNIISQDGLPIIGTRVKAGDPLCAYIDDTTGRTK 875

Query: 810  TNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLW 868
             +  KG E+ F+D V V   ++ +   QK +I+ R  R+P+IGDKFSSRHGQKGVCSQ +
Sbjct: 876  FHKYKGDETAFIDEVRVLGSDAGDAELQKIHIKLRIPRSPVIGDKFSSRHGQKGVCSQKF 935

Query: 869  PDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKK 928
            P IDMPFS  +GM+PD+IINPHAFPSRMTI M +ES+A K G+LHG   DATPF  S K 
Sbjct: 936  PAIDMPFS-ESGMQPDVIINPHAFPSRMTIGMFVESMAGKAGALHGLAQDATPFKFSDKD 994

Query: 929  TNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHM 988
                         VD  GE LR  G+NY+G E +YSG+ G E   +I++G VYYQRLRHM
Sbjct: 995  RP-----------VDYFGEQLRAAGYNYYGNEPMYSGITGEEFHADIYLGLVYYQRLRHM 1043

Query: 989  VSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYH 1048
            V+DKFQVR+TG +D +TRQP+KGRKR GGIRFGEMERD+L+AHG ++LL DRL  CSDY 
Sbjct: 1044 VNDKFQVRTTGPVDPLTRQPVKGRKRAGGIRFGEMERDALIAHGTSFLLQDRLMNCSDYS 1103

Query: 1049 VADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTC------HACQTSKG----- 1097
             A VC  CGS+++  F         E+GG    +   ++ C      HA + SK      
Sbjct: 1104 TAWVCRNCGSLVSLGF--------EEVGGAQGMQEYCRI-CDGHKHEHAEEMSKENGVGV 1154

Query: 1098 ----------METVAMPYVFRYLAAELAAMNIKITLQL 1125
                      M+ V +PYVFRYL AE+A M IK+ + +
Sbjct: 1155 VMRGGEKKGRMDVVPVPYVFRYLCAEMACMGIKLNVTV 1192


>gi|33469941|ref|NP_061887.2| DNA-directed RNA polymerase I subunit RPA2 isoform 1 [Homo sapiens]
 gi|92090637|sp|Q9H9Y6.2|RPA2_HUMAN RecName: Full=DNA-directed RNA polymerase I subunit RPA2; Short=RNA
            polymerase I subunit 2; AltName: Full=DNA-directed RNA
            polymerase I 135 kDa polypeptide; Short=RPA135
 gi|62420281|gb|AAX81999.1| unknown [Homo sapiens]
 gi|119593998|gb|EAW73592.1| polymerase (RNA) I polypeptide B, 128kDa, isoform CRA_c [Homo
            sapiens]
          Length = 1135

 Score =  894 bits (2310), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/1161 (42%), Positives = 675/1161 (58%), Gaps = 108/1161 (9%)

Query: 12   LRELVRHHIESFDYMLDEGLS--------------------EMFD--------------- 36
            L+EL R H+ESF+Y + EGL                      + D               
Sbjct: 35   LQELTRAHVESFNYAVHEGLGLAVQAIPPFEFAFKDERISFTILDAVISPPTVPKGTICK 94

Query: 37   -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
                    CR  + +Y GKL AD+ +        ++++    G  P+M+K++ C+L+   
Sbjct: 95   EANVYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQFL--GYVPIMVKSKLCNLRNLP 152

Query: 90   SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
             Q L+   EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R  ++ R  GYT   V +
Sbjct: 153  PQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSM 212

Query: 150  RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
             CVR++ S+V + L+YL NG+V L F  + + + LP+G  LKALV  +D +IF  L    
Sbjct: 213  HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269

Query: 210  DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
                 KE  +     VS+ ++I++ E      +T+ Q L ++GE F+  ++         
Sbjct: 270  ---KGKEDDSFLRNSVSQMLRIVMEE----GCSTQKQVLNYLGECFRVKLNVPDWYPNEQ 322

Query: 270  VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
             AE +    I +HL  N +KF +L  M +KLF+L     + DNPDSL NQE+L PG L  
Sbjct: 323  AAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFL 382

Query: 330  IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
            ++LKEKLE WL   K     + +      +  NL  I  +        +    E +  TG
Sbjct: 383  MFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMRIFTM-----GIDLTKPFEYLFATG 437

Query: 390  RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
             L ++TGL L Q +G  V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGFL
Sbjct: 438  NLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFL 497

Query: 450  CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
            CPVHTPDGEPCGL+NH+T+ C V + +    +I          L   +GV  I   P   
Sbjct: 498  CPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASI--------PALLCNLGVTPIDGAPHRS 549

Query: 510  KSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS-LGGA 568
             S       VLLDG +VG +       +   LR  KV     IP  +EV  +P++     
Sbjct: 550  YS---ECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEVVLIPMTGKPSL 606

Query: 569  YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPAT 628
            YPGL+LFT+P + VRPV+N++L  EE     LIG  EQ+FM +   +        A   T
Sbjct: 607  YPGLFLFTTPCRLVRPVQNLALGKEE-----LIGTMEQIFMNVAIFED----EVFAGVTT 657

Query: 629  HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTP 688
            H+E+ P  +LSV+AN  P+SDHNQSPRNMYQCQM KQTMGF +   + R+D KLY LQTP
Sbjct: 658  HQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTP 717

Query: 689  QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
            Q+P+VR + Y  Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG  HG +Y++E
Sbjct: 718  QSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSE 777

Query: 749  TIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSW 808
             IDLS+   + D       +  D + L   +D DGLP++G  +  G+PY S  +  T   
Sbjct: 778  FIDLSEKIKQGDSSLVFGIKPGDPRVLQK-LDDDGLPFIGAKLQYGDPYYSYLNLNTGES 836

Query: 809  RTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQL 867
                 K  E+  VD + V   ++ +   K   I  R  RNP IGDKF+SRHGQKG+ S+L
Sbjct: 837  FVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRL 896

Query: 868  WPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVK 927
            WP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+A K  +LHG   DATPF  S  
Sbjct: 897  WPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFS-- 953

Query: 928  KTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRH 987
                     E  S ++  GEML+  G+N++G E LYSG+ G EL  +IFIG VYYQRLRH
Sbjct: 954  ---------EENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRH 1004

Query: 988  MVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDY 1047
            MVSDKFQVR+TG  D++T QPI GR   GGIRFGEMERD+LLAHG ++LLHDRL  CSD 
Sbjct: 1005 MVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDR 1064

Query: 1048 HVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP---KKVTCHACQTSKGMETVAMP 1104
             VA VC  CGS+L+     P           PP+ +    +K  C  C  S  ++TV++P
Sbjct: 1065 SVAHVCVKCGSLLSPLLEKP-----------PPSWSAMRNRKYNCTLCSRSDTIDTVSVP 1113

Query: 1105 YVFRYLAAELAAMNIKITLQL 1125
            YVFRY  AELAAMNIK+ L +
Sbjct: 1114 YVFRYFVAELAAMNIKVKLDV 1134


>gi|301781941|ref|XP_002926382.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like isoform 1
            [Ailuropoda melanoleuca]
 gi|281347779|gb|EFB23363.1| hypothetical protein PANDA_016030 [Ailuropoda melanoleuca]
          Length = 1135

 Score =  894 bits (2310), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/1165 (42%), Positives = 672/1165 (57%), Gaps = 116/1165 (9%)

Query: 12   LRELVRHHIESFDYMLDEGLSEMFD----------------------------------- 36
            L+EL R H+ESF+Y + EGLS                                       
Sbjct: 35   LQELTRAHVESFNYAVREGLSHAVQAIPPFEFAFKDERISLTIVDAVISPPMVPKGNICK 94

Query: 37   -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
                    CR  + +Y GKL AD+ +        ++++    G  P+M+K++ C+L    
Sbjct: 95   ELNIYPAECRGRRSTYRGKLTADISWAVNGISRGIIKQFL--GYVPIMVKSKLCNLHSLP 152

Query: 90   SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
             + L+   EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R  ++ R  GYT   V +
Sbjct: 153  PRALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPVAMIRPKWKTRGPGYTQYGVSM 212

Query: 150  RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
             CVR++ S+V + L+YL NG+V L F  + + + LP+G  LKALV  +D +IF  L    
Sbjct: 213  HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269

Query: 210  DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
                 KE+ +     VS+ ++I++ E      +T+ Q L ++GE F+  +          
Sbjct: 270  ---KGKEEDSFFRNSVSQMLRIVMEE----GCSTQKQVLNYLGECFRVKLSLPDWYPNEQ 322

Query: 270  VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
             AE +    I +HL  N +KF +L  M +KLF+L     + DNPDSL NQE+L PG L  
Sbjct: 323  AAEFLFDQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFL 382

Query: 330  IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
            ++LKEK+E WL   K  +    +      +  NL  I  +        +    E +L TG
Sbjct: 383  MFLKEKMESWLVSIKIALDKRSQKTNVSINTENLMKIFSL-----GTDLTKPFEYLLATG 437

Query: 390  RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
             L ++TGL   Q +G  V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGFL
Sbjct: 438  NLRSKTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFL 497

Query: 450  CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
            CPVHTPDGEPCGL+NH+T+ C V + +              S+  +L  +G+ P     V
Sbjct: 498  CPVHTPDGEPCGLMNHLTAVCEVVTQF----------VYTASVPALLCSLGVTP-----V 542

Query: 510  KSGP----PAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS- 564
               P         VLLDG +VG +       +   LR  KV     IP  +EV  +P++ 
Sbjct: 543  DGAPHRPYAECYPVLLDGVMVGWVDKELAPSIADSLRHFKVLREKRIPPWMEVALIPMTG 602

Query: 565  LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNA 624
                YPGL+LFT+P + VRPV+N+ L  EE     LIG  EQ+FM I   +        A
Sbjct: 603  KPSLYPGLFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQIFMNIAIFED----EVLA 653

Query: 625  FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
               TH+E+ P  +LSV+AN  P+SDHNQSPRNMYQCQM KQTMGF +   + R+D KLY 
Sbjct: 654  GVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQARSDNKLYR 713

Query: 685  LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI 744
            LQTPQ+P+VR   Y  Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG  HG +
Sbjct: 714  LQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSV 773

Query: 745  YQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT 804
            Y++E IDLS+   + D       +  D + L   +D DGLP++G  +  G+PY S  +  
Sbjct: 774  YKSEFIDLSEKIKQGDDSLVFGVKPGDPRILQK-LDDDGLPFIGAQLQYGDPYYSYLNLN 832

Query: 805  TNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGV 863
            T        K  E+  VD + V   ++ +   K   I  R  RNP IGDKF+SRHGQKG+
Sbjct: 833  TGESFVMYYKSKENCIVDNIKVCSNDTGSGKFKCICITMRVPRNPTIGDKFASRHGQKGI 892

Query: 864  CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFA 923
             S+LWP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+A K  +LHG   DATPF 
Sbjct: 893  LSRLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFT 951

Query: 924  NSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQ 983
             S           E  S ++  GE+L+  G+N++G E LYSG+ G EL  +IFIG VYYQ
Sbjct: 952  FS-----------EENSALEYFGELLKAAGYNFYGTERLYSGISGIELEADIFIGVVYYQ 1000

Query: 984  RLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHT 1043
            RLRHMVSDKFQVR+TG  D++T QPI GR   GGIRFGEMERD+LLAHG ++LLHDRL  
Sbjct: 1001 RLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFN 1060

Query: 1044 CSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP---KKVTCHACQTSKGMET 1100
            CSD  VA VC  CGS+L+     P           PP+ +    +K  C  C  S  ++T
Sbjct: 1061 CSDRSVAHVCVKCGSLLSPLLEKP-----------PPSWSAMRNRKYNCTLCDRSDTIDT 1109

Query: 1101 VAMPYVFRYLAAELAAMNIKITLQL 1125
            V++PYVFRY  AELAAMNIK+ L +
Sbjct: 1110 VSVPYVFRYFVAELAAMNIKVKLDV 1134


>gi|426336843|ref|XP_004031664.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 1
            [Gorilla gorilla gorilla]
          Length = 1135

 Score =  894 bits (2309), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/1161 (42%), Positives = 674/1161 (58%), Gaps = 108/1161 (9%)

Query: 12   LRELVRHHIESFDYMLDEGLS--------------------EMFD--------------- 36
            L+EL R H+ESF+Y + EGL                      + D               
Sbjct: 35   LQELTRAHVESFNYAVHEGLGLAVQAIPPFEFAFKDERISFTILDAVISPPTVPKGTICK 94

Query: 37   -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
                    CR  + +Y GKL AD+ +        ++++    G  P+M+K++ C+L+   
Sbjct: 95   EANVYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQFL--GYVPIMVKSKLCNLRNLP 152

Query: 90   SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
             Q L+   EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R  ++ R  GYT   V +
Sbjct: 153  PQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSM 212

Query: 150  RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
             CVR++ S+V + L+YL NG+V L F  + + + LP+G  LKALV  +D +IF  L    
Sbjct: 213  HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269

Query: 210  DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
                 KE  +     VS+ ++I++ E      +T+ Q L ++GE F+  ++         
Sbjct: 270  ---KGKEDDSFLRNSVSQMLRIVMEE----GCSTQKQVLNYLGECFRVKLNVPDWYPNEQ 322

Query: 270  VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
             AE +    I +HL  N +KF +L  M +KLF+L     + DNPDSL NQE+L PG L  
Sbjct: 323  AAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFL 382

Query: 330  IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
            ++LKEKLE WL   K     + +      +  NL  I  +        +    E +  TG
Sbjct: 383  MFLKEKLEGWLVSIKIAFDKKAQKTNVSMNTDNLMRIFAM-----GIDLTKPFEYLFATG 437

Query: 390  RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
             L ++TGL L Q +G  V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGFL
Sbjct: 438  NLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFL 497

Query: 450  CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
            CPVHTPDGEPCGL+NH+T+ C V + +    +I          L   +GV  I   P   
Sbjct: 498  CPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASI--------PALLCNLGVTPIDGAPHRS 549

Query: 510  KSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS-LGGA 568
             S       VLLDG +VG +       +   LR  KV     IP  +EV  +P++     
Sbjct: 550  YS---ECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEVVLIPMTGKPSL 606

Query: 569  YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPAT 628
            YPGL+LFT+P + VRPV+N+ L  EE     LIG  EQ+FM +   +        A   T
Sbjct: 607  YPGLFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQIFMNVAIFED----EVFAGVTT 657

Query: 629  HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTP 688
            H+E+ P  +LSV+AN  P+SDHNQSPRNMYQCQM KQTMGF +   + R+D KLY LQTP
Sbjct: 658  HQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTP 717

Query: 689  QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
            Q+P+VR + Y  Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG  HG +Y++E
Sbjct: 718  QSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSE 777

Query: 749  TIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSW 808
             IDLS+   + D       +  D + L   +D DGLP++G  +  G+PY S  +  T   
Sbjct: 778  FIDLSEKIKQGDTSLVFGIKPGDPRVLQK-LDDDGLPFIGAKLQYGDPYYSYLNLNTGES 836

Query: 809  RTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQL 867
                 K  E+  VD + V   ++ +   K   I  R  RNP IGDKF+SRHGQKG+ S+L
Sbjct: 837  FVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRL 896

Query: 868  WPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVK 927
            WP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+A K  +LHG   DATPF  S  
Sbjct: 897  WPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFS-- 953

Query: 928  KTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRH 987
                     E  S ++  GEML+  G+N++G E LYSG+ G EL  +IFIG VYYQRLRH
Sbjct: 954  ---------EENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRH 1004

Query: 988  MVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDY 1047
            MVSDKFQVR+TG  D++T QPI GR   GGIRFGEMERD+LLAHG ++LLHDRL  CSD 
Sbjct: 1005 MVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDR 1064

Query: 1048 HVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP---KKVTCHACQTSKGMETVAMP 1104
             VA VC  CGS+L+     P           PP+ +    +K  C  C  S  ++TV++P
Sbjct: 1065 SVAHVCVKCGSLLSPLLEKP-----------PPSWSAMRNRKYNCTLCNRSDTIDTVSVP 1113

Query: 1105 YVFRYLAAELAAMNIKITLQL 1125
            YVFRY  AELAAMNIK+ L +
Sbjct: 1114 YVFRYFVAELAAMNIKVKLDV 1134


>gi|114579600|ref|XP_001145399.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 8 [Pan
            troglodytes]
 gi|410228170|gb|JAA11304.1| polymerase (RNA) I polypeptide B, 128kDa [Pan troglodytes]
 gi|410261860|gb|JAA18896.1| polymerase (RNA) I polypeptide B, 128kDa [Pan troglodytes]
 gi|410261862|gb|JAA18897.1| polymerase (RNA) I polypeptide B, 128kDa [Pan troglodytes]
 gi|410303046|gb|JAA30123.1| polymerase (RNA) I polypeptide B, 128kDa [Pan troglodytes]
 gi|410303048|gb|JAA30124.1| polymerase (RNA) I polypeptide B, 128kDa [Pan troglodytes]
          Length = 1135

 Score =  893 bits (2308), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/1161 (42%), Positives = 673/1161 (57%), Gaps = 108/1161 (9%)

Query: 12   LRELVRHHIESFDYMLDEGLS--------------------EMFD--------------- 36
            L+EL R H+ESF+Y + EGL                      + D               
Sbjct: 35   LQELTRAHVESFNYAVHEGLGLAVQAIPPFEFAFKDERISFTILDAVISPPTVPKGTICK 94

Query: 37   -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
                    CR  + +Y GKL AD+ +        ++++    G  P+M+K++ C+L+   
Sbjct: 95   EANVYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQFL--GYVPIMVKSKLCNLRNLP 152

Query: 90   SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
             Q L+   EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R  ++ R  GYT   V +
Sbjct: 153  PQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSM 212

Query: 150  RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
             CVR++ S+V + L+YL NG+V L F  + + + LP+G  LKALV  +D +IF  L    
Sbjct: 213  HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269

Query: 210  DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
                 KE  +     VS+ ++I++ E       T+ Q L ++GE F+  ++         
Sbjct: 270  ---KGKEDDSFLRNSVSQMLRIVMEE----GCLTQKQVLNYLGECFRVKLNVPDWYPNEQ 322

Query: 270  VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
             AE +    I +HL  N +KF +L  M +KLF+L     + DNPDSL NQE+L PG L  
Sbjct: 323  AAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFL 382

Query: 330  IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
            ++LKEKLE WL   K     + +      +  NL  I  +        +    E +  TG
Sbjct: 383  MFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMKIFTM-----GIDLTKPFEYLFATG 437

Query: 390  RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
             L ++TGL L Q +G  V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGFL
Sbjct: 438  NLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFL 497

Query: 450  CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
            CPVHTPDGEPCGL+NH+T+ C V + +    +I          L   +GV  I   P   
Sbjct: 498  CPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASI--------PALLCNLGVTPIDGAPHRS 549

Query: 510  KSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS-LGGA 568
             S       VLLDG +VG +       +   LR  KV     IP  +EV  +P++     
Sbjct: 550  YS---ECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEVVLIPMTGKPSL 606

Query: 569  YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPAT 628
            YPGL+LFT+P + VRPV+N+ L  EE     LIG  EQ+FM +   +        A   T
Sbjct: 607  YPGLFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQIFMNVAIFED----EVFAGVTT 657

Query: 629  HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTP 688
            H+E+ P  +LSV+AN  P+SDHNQSPRNMYQCQM KQTMGF +   + R+D KLY LQTP
Sbjct: 658  HQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPILTYQDRSDNKLYRLQTP 717

Query: 689  QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
            Q+P+VR + Y  Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG  HG +Y++E
Sbjct: 718  QSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSE 777

Query: 749  TIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSW 808
             IDLS+   + D       +  D + L   +D DGLP++G  +  G+PY S  +  T   
Sbjct: 778  FIDLSEKIKQGDSSLVFGIKPGDPRVLQK-LDDDGLPFIGAKLQYGDPYYSYLNLNTGES 836

Query: 809  RTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQL 867
                 K  E+  VD + V   ++ +   K   I  R  RNP IGDKF+SRHGQKG+ S+L
Sbjct: 837  FVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRL 896

Query: 868  WPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVK 927
            WP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+A K  +LHG   DATPF  S  
Sbjct: 897  WPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFS-- 953

Query: 928  KTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRH 987
                     E  S ++  GEML+  G+N++G E LYSG+ G EL  +IFIG VYYQRLRH
Sbjct: 954  ---------EENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRH 1004

Query: 988  MVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDY 1047
            MVSDKFQVR+TG  D++T QPI GR   GGIRFGEMERD+LLAHG ++LLHDRL  CSD 
Sbjct: 1005 MVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDR 1064

Query: 1048 HVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP---KKVTCHACQTSKGMETVAMP 1104
             VA VC  CGS+L+     P           PP+ +    +K  C  C  S  ++TV++P
Sbjct: 1065 SVAHVCVKCGSLLSPLLEKP-----------PPSWSAMRNRKYNCTLCNRSDTIDTVSVP 1113

Query: 1105 YVFRYLAAELAAMNIKITLQL 1125
            YVFRY  AELAAMNIK+ L +
Sbjct: 1114 YVFRYFVAELAAMNIKVKLDV 1134


>gi|212286172|ref|NP_001131076.1| DNA-directed RNA polymerase I subunit RPA2 isoform 2 [Homo sapiens]
 gi|119593996|gb|EAW73590.1| polymerase (RNA) I polypeptide B, 128kDa, isoform CRA_a [Homo
            sapiens]
          Length = 1079

 Score =  893 bits (2308), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/1123 (43%), Positives = 671/1123 (59%), Gaps = 88/1123 (7%)

Query: 12   LRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNF 71
            L+EL R H+ESF+Y + EGL        QA I++            ++  S  + ++F  
Sbjct: 35   LQELTRAHVESFNYAVHEGLGLAV----QADINWA-----------VNGISKGIIKQF-L 78

Query: 72   GQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMV 131
            G  P+M+K++ C+L+    Q L+   EEA EMGGYFI+NG+E+V R +I+P++N+P++M+
Sbjct: 79   GYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMI 138

Query: 132  RSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLK 191
            R  ++ R  GYT   V + CVR++ S+V + L+YL NG+V L F  + + + LP+G  LK
Sbjct: 139  RPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALK 198

Query: 192  ALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHI 251
            ALV  +D +IF  L         KE  +     VS+ ++I++ E      +T+ Q L ++
Sbjct: 199  ALVSFSDYQIFQELI------KGKEDDSFLRNSVSQMLRIVMEE----GCSTQKQVLNYL 248

Query: 252  GEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSD 311
            GE F+  ++          AE +    I +HL  N +KF +L  M +KLF+L     + D
Sbjct: 249  GECFRVKLNVPDWYPNEQAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMED 308

Query: 312  NPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVME 371
            NPDSL NQE+L PG L  ++LKEKLE WL   K     + +      +  NL  I  +  
Sbjct: 309  NPDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMRIFTM-- 366

Query: 372  KNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFA 431
                  +    E +  TG L ++TGL L Q +G  V A++LNF+R++S FR VHRGA FA
Sbjct: 367  ---GIDLTKPFEYLFATGNLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFA 423

Query: 432  GLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS 491
             +RTT+VR+LLPESWGFLCPVHTPDGEPCGL+NH+T+ C V + +              S
Sbjct: 424  KMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQF----------VYTAS 473

Query: 492  ILRVLIGVGMIPSLPKLVKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVS 547
            I  +L  +G+ P     +   P    S    VLLDG +VG +       +   LR  KV 
Sbjct: 474  IPALLCNLGVTP-----IDGAPHRSYSECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVL 528

Query: 548  AASVIPDDLEVGYVPLS-LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQ 606
                IP  +EV  +P++     YPGL+LFT+P + VRPV+N++L  EE     LIG  EQ
Sbjct: 529  REKRIPPWMEVVLIPMTGKPSLYPGLFLFTTPCRLVRPVQNLALGKEE-----LIGTMEQ 583

Query: 607  VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQT 666
            +FM +   +        A   TH+E+ P  +LSV+AN  P+SDHNQSPRNMYQCQM KQT
Sbjct: 584  IFMNVAIFED----EVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQT 639

Query: 667  MGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMED 726
            MGF +   + R+D KLY LQTPQ+P+VR + Y  Y +D YP GTNAIVAV++YTGYDMED
Sbjct: 640  MGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMED 699

Query: 727  AMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPY 786
            AMI+NK+S +RG  HG +Y++E IDLS+   + D       +  D + L   +D DGLP+
Sbjct: 700  AMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQK-LDDDGLPF 758

Query: 787  VGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHT 845
            +G  +  G+PY S  +  T        K  E+  VD + V   ++ +   K   I  R  
Sbjct: 759  IGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVP 818

Query: 846  RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
            RNP IGDKF+SRHGQKG+ S+LWP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+
Sbjct: 819  RNPTIGDKFASRHGQKGILSRLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESM 877

Query: 906  AAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSG 965
            A K  +LHG   DATPF  S           E  S ++  GEML+  G+N++G E LYSG
Sbjct: 878  AGKSAALHGLCHDATPFIFS-----------EENSALEYFGEMLKAAGYNFYGTERLYSG 926

Query: 966  VYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMER 1025
            + G EL  +IFIG VYYQRLRHMVSDKFQVR+TG  D++T QPI GR   GGIRFGEMER
Sbjct: 927  ISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMER 986

Query: 1026 DSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP- 1084
            D+LLAHG ++LLHDRL  CSD  VA VC  CGS+L+     P           PP+ +  
Sbjct: 987  DALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKP-----------PPSWSAM 1035

Query: 1085 --KKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
              +K  C  C  S  ++TV++PYVFRY  AELAAMNIK+ L +
Sbjct: 1036 RNRKYNCTLCSRSDTIDTVSVPYVFRYFVAELAAMNIKVKLDV 1078


>gi|344291448|ref|XP_003417447.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
            RPA2-like [Loxodonta africana]
          Length = 1135

 Score =  893 bits (2308), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/1098 (44%), Positives = 663/1098 (60%), Gaps = 76/1098 (6%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR  + +Y GKL AD+ +        ++++    G  P+M+K++ C+L     + L+   
Sbjct: 103  CRGRRSTYRGKLTADISWAVNGISKGIIKQFL--GYVPIMVKSKVCNLHSLPPKALIEHH 160

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R  ++ R  GYT   V + CVR++ S
Sbjct: 161  EEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKSRGLGYTQYGVSMHCVREEHS 220

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            +V + L+YL NG+V L F  + + + LP+G  LKALV  +D +IF  L         KE 
Sbjct: 221  AVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI------RGKED 274

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
             +     VS+ ++I+  E      +T+ Q L ++GE F+  ++  +       AE +   
Sbjct: 275  DSFFRNSVSQMLRIVTEE----GCSTQKQVLNYLGECFRVKLNLPEWYPNEQAAEFLFDQ 330

Query: 278  YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
             I +HLN N +KF +L  M +KLF+L     + +NPDSL NQE+L PG L  ++LKEK+E
Sbjct: 331  CICIHLNSNTEKFYVLCLMTRKLFALAKGECMEENPDSLMNQEVLTPGQLFLMFLKEKME 390

Query: 338  DWLRKGKKLIQDEIENNGKKFDF-FNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
             WL      I+  I+   +K +   N  N+ K+   N    +    E +L TG L ++TG
Sbjct: 391  AWLVS----IKIAIDKKAQKINLSINTENLMKIF--NMGTDLTRPFEYLLATGNLRSKTG 444

Query: 397  LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
            L   Q +G  V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGFLCPVHTPD
Sbjct: 445  LGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFLCPVHTPD 504

Query: 457  GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGP--- 513
            GEPCGL+NH+T+ C V + +             TSI  +L  +G+ P     V   P   
Sbjct: 505  GEPCGLMNHLTAVCEVVTQF----------VYTTSIPALLCNLGVTP-----VDGAPHRP 549

Query: 514  -PAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS-LGGAYPG 571
                  VLLDG +VG +       +   LRR KV     IP  +EV  +P++     YPG
Sbjct: 550  HSECYPVLLDGVMVGWVEKDLAPGIAESLRRFKVLREKRIPPWMEVALIPMTGKPNLYPG 609

Query: 572  LYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEE 631
            L+LFT+P + VRPV+N+ L  EE     LIG  EQVFM I   +        A   TH+E
Sbjct: 610  LFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQVFMNIAIFED----EVFAGVTTHQE 660

Query: 632  IHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTP 691
            + P  +LSV+A+  P+SDHNQSPRNMYQCQM KQTMGF +   + R+D KLY LQTPQ+P
Sbjct: 661  LFPHSLLSVIASFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSP 720

Query: 692  IVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETID 751
            +VR   Y  Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG  HG +Y++E ID
Sbjct: 721  LVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFID 780

Query: 752  LSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTN 811
            LS+   + D       +  D + L   +D DGLP++G  +  G+PY S  +  T      
Sbjct: 781  LSEKIKQGDDSLVFGVKPGDPRILQK-LDDDGLPFIGAQLQYGDPYYSYLNLNTGENFVV 839

Query: 812  SRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPD 870
              K  E+  VD + V   ++ +   K   I  R  RNP IGDKF+SRHGQKG+ S+LWP 
Sbjct: 840  YYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPV 899

Query: 871  IDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTN 930
             DMPF+  +GM PD++ NPH FPSRMTI ML+ES+A K  +LHG   DATPF  S     
Sbjct: 900  EDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFS----- 953

Query: 931  GDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVS 990
                  E  S ++  GEML+  G+N++G E LYSG+ G EL  +IFIG VYYQRLRHMVS
Sbjct: 954  ------EENSALEYFGEMLKAAGYNFYGTERLYSGISGLELKADIFIGVVYYQRLRHMVS 1007

Query: 991  DKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVA 1050
            DKFQVR+TG  D++T QP+ GR   GGIRFGEMERD+LLAHG ++LLHDRL  CSD  VA
Sbjct: 1008 DKFQVRTTGARDKVTNQPVGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVA 1067

Query: 1051 DVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP---KKVTCHACQTSKGMETVAMPYVF 1107
             VC  CGS+L+     P           PP+ +    +K  C  C  S  ++TV++PYVF
Sbjct: 1068 HVCVKCGSLLSPLLEKP-----------PPSWSAMRNRKYNCTLCNRSDTIDTVSVPYVF 1116

Query: 1108 RYLAAELAAMNIKITLQL 1125
            RY  AELAAMNI++ L +
Sbjct: 1117 RYFVAELAAMNIRVKLDV 1134


>gi|224967092|ref|NP_033112.2| DNA-directed RNA polymerase I subunit RPA2 [Mus musculus]
 gi|341941989|sp|P70700.2|RPA2_MOUSE RecName: Full=DNA-directed RNA polymerase I subunit RPA2; Short=RNA
            polymerase I subunit 2; AltName: Full=DNA-directed RNA
            polymerase I 135 kDa polypeptide; Short=RPA135
 gi|74137985|dbj|BAE25401.1| unnamed protein product [Mus musculus]
 gi|74194733|dbj|BAE25971.1| unnamed protein product [Mus musculus]
 gi|148696280|gb|EDL28227.1| RNA polymerase 1-2 [Mus musculus]
          Length = 1135

 Score =  893 bits (2307), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/1168 (42%), Positives = 683/1168 (58%), Gaps = 122/1168 (10%)

Query: 12   LRELVRHHIESFDYMLDEGLSEMFD----------------------------------- 36
            L++L R H++SF+Y   EGLS                                       
Sbjct: 35   LQDLTRAHVDSFNYAALEGLSHAVQAIPPFEFAFKDERISLTIVDAVISPPSVPKGTICK 94

Query: 37   -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
                    CR  K +Y G+L AD+ +        ++++    G  P+M+K++ C+L    
Sbjct: 95   DLNVYPAECRGRKSTYRGRLTADISWAVNGVPKGIIKQFL--GYVPIMVKSKLCNLYNLP 152

Query: 90   SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
             + L+   EEA EMGGYFI+NG+E+V R +I+P++N+P++MVR  ++ R  GYT   V +
Sbjct: 153  PRVLIEHHEEAEEMGGYFIINGIEKVIRMLIVPRRNFPIAMVRPKWKSRGLGYTQFGVSM 212

Query: 150  RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
            RCVR++ S+V + L+Y+ NG+V L F  + + + LP+G  LKALV  +D +IF  L    
Sbjct: 213  RCVREEHSAVNMNLHYVENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269

Query: 210  DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
                 KE+ +     VS+ ++I++ E       ++ Q L ++GE F+  +          
Sbjct: 270  ---KGKEEDSFFRNSVSQMLRIVIEE----GCHSQKQVLNYLGECFRVKLSLPDWYPNVE 322

Query: 270  VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
             AE ++   I +HL  N DKF LL  M +KLF+L     + DNPDSL NQE+L PG L  
Sbjct: 323  AAEFLLNQCICIHLQSNTDKFYLLCLMTRKLFALARGECMDDNPDSLVNQEVLSPGQLFL 382

Query: 330  IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
            ++LKEK+E+WL   K ++    +      +  NL  I  +       ++    E +L TG
Sbjct: 383  MFLKEKMENWLVSIKIVLDKRAQKANVSINNENLMKIFSM-----GTELTRPFEYLLATG 437

Query: 390  RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
             L ++TGL   Q +G  V A++LNFLR++S FR VHRGA+FA +RTT+VR+LLPESWGFL
Sbjct: 438  NLRSKTGLGFLQDSGLCVVADKLNFLRYLSHFRCVHRGAAFAKMRTTTVRRLLPESWGFL 497

Query: 450  CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
            CPVHTPDG PCGLLNH+T+ C V + +              SI  +L G+G+ P     V
Sbjct: 498  CPVHTPDGAPCGLLNHLTAVCEVVTKF----------VYTASIPALLCGLGVTP-----V 542

Query: 510  KSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS- 564
             + P    S    VLLDG +VG +      +V   LRR KV     IP  +EV  +P++ 
Sbjct: 543  DTAPCRPYSDCYPVLLDGVMVGWVDKDLAPEVADTLRRFKVLREKRIPPWMEVALIPMTG 602

Query: 565  LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRN 623
                YPGL+LFT+P + VRPV+N+ L  EE     LIG  EQ+FM +    D   GG   
Sbjct: 603  KPSLYPGLFLFTTPCRLVRPVQNLELGREE-----LIGTMEQLFMNVAIFEDEVFGGI-- 655

Query: 624  AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
               +TH+E+ P  +LSV+AN  P+SDHNQSPRNMYQCQM KQTMGF +   + R+D KLY
Sbjct: 656  ---STHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQNRSDNKLY 712

Query: 684  HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
             LQTPQ+P+VR   Y  Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG  HG 
Sbjct: 713  RLQTPQSPLVRPCMYDFYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGS 772

Query: 744  IYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDK 803
            +Y++E IDLS+   + +       +  D + +   +D DGLP++G  +  G+PY S  + 
Sbjct: 773  VYKSEFIDLSEKFKQGEDNLVFGVKPGDPRVMQK-LDDDGLPFIGAKLEYGDPYYSYLNL 831

Query: 804  TTNSWRTNSRKGSESVFVDYVAV---DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQ 860
             T        K  E+  VD + V   DM + K   +   I  R  RNP IGDKF+SRHGQ
Sbjct: 832  NTGEGFVVYYKSKENCVVDNIKVCSNDMGSGKF--KCICITVRIPRNPTIGDKFASRHGQ 889

Query: 861  KGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDAT 920
            KG+ S+LWP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+A K  +LHG   DAT
Sbjct: 890  KGILSRLWPAEDMPFTE-SGMMPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDAT 948

Query: 921  PFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPV 980
            PF  S           E  S ++  GEML+  G+N++G E LYSG+ G EL  +IFIG V
Sbjct: 949  PFIFS-----------EENSALEYFGEMLKAAGYNFYGTERLYSGISGMELEADIFIGVV 997

Query: 981  YYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDR 1040
            YYQRLRHMVSDKFQVR+TG  D++T QP+ GR   GGIRFGEMERD+LLAHG ++LLHDR
Sbjct: 998  YYQRLRHMVSDKFQVRTTGARDKVTNQPLGGRNVQGGIRFGEMERDALLAHGTSFLLHDR 1057

Query: 1041 LHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP---KKVTCHACQTSKG 1097
            L  CSD  VA +C  CGS+L+     P           PP+ +    +K  C  C  S  
Sbjct: 1058 LFNCSDRSVAHMCVECGSLLSPLLEKP-----------PPSWSAMRNRKYNCTVCGRSDT 1106

Query: 1098 METVAMPYVFRYLAAELAAMNIKITLQL 1125
            ++TV++PYVFRY  AELAAMNIK+ L +
Sbjct: 1107 IDTVSVPYVFRYFVAELAAMNIKVKLDV 1134


>gi|397465556|ref|XP_003804557.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 1 [Pan
            paniscus]
          Length = 1135

 Score =  892 bits (2306), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/1161 (42%), Positives = 673/1161 (57%), Gaps = 108/1161 (9%)

Query: 12   LRELVRHHIESFDYMLDEGLS--------------------EMFD--------------- 36
            L+EL R H+ESF+Y + EGL                      + D               
Sbjct: 35   LQELTRAHVESFNYAVHEGLGLAVQAIPPFEFAFKDERISFTILDAVISPPTVPKGTICK 94

Query: 37   -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
                    CR  + +Y GKL AD+ +        ++++    G  P+M+K++ C+L+   
Sbjct: 95   EANVYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQFL--GYVPIMVKSKLCNLRNLP 152

Query: 90   SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
             Q L+   EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R  ++ R  GYT   V +
Sbjct: 153  PQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSM 212

Query: 150  RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
             CVR++ S+V + L+YL NG+V L F  + + + LP+G  LKALV  +D +IF  L    
Sbjct: 213  HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269

Query: 210  DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
                 KE  +     VS+ ++I++ E       T+ Q L ++GE F+  ++         
Sbjct: 270  ---KGKEDDSFLRNSVSQMLRIVMEE----GCLTQKQVLNYLGECFRVKLNVPDWYPNEQ 322

Query: 270  VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
             AE +    I +HL  N +KF +L  M +KLF+L     + DNPDSL NQE+L PG L  
Sbjct: 323  AAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFL 382

Query: 330  IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
            ++LKEKLE WL   K     + +      +  NL  I  +        +    E +  TG
Sbjct: 383  MFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMKIFTM-----GIDLTKPFEYLFATG 437

Query: 390  RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
             L ++TGL L Q +G  V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGFL
Sbjct: 438  NLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFL 497

Query: 450  CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
            CPVHTPDGEPCGL+NH+T+ C V + +    +I          L   +GV  I   P   
Sbjct: 498  CPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASI--------PALLCNLGVTPIDGAPHRS 549

Query: 510  KSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS-LGGA 568
             S       VLLDG +VG +       +   LR  KV     IP  +EV  +P++     
Sbjct: 550  YS---ECYPVLLDGVMVGWVDKDLAPGITDSLRHFKVLREKRIPPWMEVVLIPMTGKPSL 606

Query: 569  YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPAT 628
            YPGL+LFT+P + VRPV+N+ L  EE     LIG  EQ+FM +   +        A   T
Sbjct: 607  YPGLFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQIFMNVAIFED----EVFAGVTT 657

Query: 629  HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTP 688
            H+E+ P  +LSV+AN  P+SDHNQSPRNMYQCQM KQTMGF +   + R+D KLY LQTP
Sbjct: 658  HQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTP 717

Query: 689  QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
            Q+P+VR + Y  Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG  HG +Y++E
Sbjct: 718  QSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSE 777

Query: 749  TIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSW 808
             IDLS+   + D       +  D + L   +D DGLP++G  +  G+PY S  +  T   
Sbjct: 778  FIDLSEKIKQGDSSLVFGIKPGDPRVLQK-LDDDGLPFIGAKLQYGDPYYSYLNLNTGES 836

Query: 809  RTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQL 867
                 K  E+  VD + V   ++ +   K   I  R  RNP IGDKF+SRHGQKG+ S+L
Sbjct: 837  FVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRL 896

Query: 868  WPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVK 927
            WP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+A K  +LHG   DATPF  S  
Sbjct: 897  WPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFS-- 953

Query: 928  KTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRH 987
                     E  S ++  GEML+  G+N++G E LYSG+ G EL  +IFIG VYYQRLRH
Sbjct: 954  ---------EENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRH 1004

Query: 988  MVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDY 1047
            MVSDKFQVR+TG  D++T QPI GR   GGIRFGEMERD+LLAHG ++LLHDRL  CSD 
Sbjct: 1005 MVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDR 1064

Query: 1048 HVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP---KKVTCHACQTSKGMETVAMP 1104
             VA VC  CGS+L+     P           PP+ +    +K  C  C  S  ++TV++P
Sbjct: 1065 SVAHVCVKCGSLLSPLLEKP-----------PPSWSAMRNRKYNCTLCNRSDTIDTVSVP 1113

Query: 1105 YVFRYLAAELAAMNIKITLQL 1125
            YVFRY  AELAAMNIK+ L +
Sbjct: 1114 YVFRYFVAELAAMNIKVKLDV 1134


>gi|50303741|ref|XP_451816.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49640948|emb|CAH02209.1| KLLA0B06303p [Kluyveromyces lactis]
          Length = 1203

 Score =  892 bits (2306), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/1118 (44%), Positives = 689/1118 (61%), Gaps = 83/1118 (7%)

Query: 39   RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
            RQ   SY GK++  +++   D G     E  + G  P+ML++ RCHL      +LV  +E
Sbjct: 127  RQRLTSYRGKILLKLKWSVND-GEETFTEVRDCGGLPIMLQSNRCHLNKMSPYELVEHRE 185

Query: 99   EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
            E+ E GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R   Y+   + IR VR DQ+S
Sbjct: 186  ESDEFGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFANRGASYSQYGIQIRSVRPDQTS 245

Query: 159  VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKG 218
             T  L+YL +G V   F  +  EYL+PV ++L+AL DTND EIF+H+            G
Sbjct: 246  QTNVLHYLNDGQVTFRFSWRKNEYLIPVVMILRALCDTNDREIFDHVV----------GG 295

Query: 219  AVGSPLVSERVKIILAEVQDL--SLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
               +  +++R++++L   +    +L  R Q LQ++G+ F+ V       +   V + ++ 
Sbjct: 296  DTSNSFLTDRLELLLRGFKKRYPTLQNRKQTLQYLGDKFRVVFQASPDMTDLQVGQELLN 355

Query: 277  DYIFVHLNDNN-DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEK 335
              + VHL +NN DKFN+L+FM++KL+SLV      DNPD+ Q+QEILL G L  + +KEK
Sbjct: 356  RIVLVHLGENNKDKFNMLLFMIRKLYSLVAGECSPDNPDAAQHQEILLGGFLYGMIVKEK 415

Query: 336  LEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQT 395
            +E++L+  +  IQ +I N G   +F +   + KV+ +  ++ IG+ ++  L TG L +Q+
Sbjct: 416  IEEYLQNIRLQIQTDI-NRGLAINFKDQKYMNKVLMR-VNENIGSKLQYFLSTGNLVSQS 473

Query: 396  GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTP 455
            GLDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGF CPVHTP
Sbjct: 474  GLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFFCPVHTP 533

Query: 456  DGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPA 515
            DG PCGLLNH++  C++++         D SK    I  +L  +G+ P+   ++ +GP +
Sbjct: 534  DGSPCGLLNHLSHKCKIST------EQSDVSK----IPSILYSLGVTPA-AHVIAAGP-S 581

Query: 516  VLSVLLDGRVVGVIPSSEIEKVVAH-LRRLKVSAASV-IPDDLEVGYVPLSLGGAYPGLY 573
            +  V LDG+++G   S E  KVVA  LR  KV   +  +P DLEVGYVP +  G YPGL+
Sbjct: 582  MCCVQLDGKIIGWC-SHEQGKVVADTLRFWKVEGKTPGLPVDLEVGYVPPTTSGQYPGLF 640

Query: 574  LFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEEI 632
            LF    + +RPVR + L  E+     ++GPFEQV+M I   P+  +         +H E 
Sbjct: 641  LFGGHSRMMRPVRYLPLDKED-----IVGPFEQVYMNIAVTPEEIENNVH-----SHVEF 690

Query: 633  HPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPI 692
             PT +LS++ANLTP+SD NQSPRNMYQCQM KQTMG    AL  R+D KLY LQT QTPI
Sbjct: 691  SPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQTGQTPI 750

Query: 693  VRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDL 752
            V+ N Y  YG+D +P GTNA+VAV++YTGYDM+DAMI+NKS+ +RG  +G +Y+ E ++L
Sbjct: 751  VKANLYDDYGMDNFPNGTNAVVAVISYTGYDMDDAMIINKSADERGFGYGTMYKVEKVNL 810

Query: 753  SDDGNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRT 810
            S + ++ D   + F    D   K     +D DGLP +G  +  G+P C+ +D T N  + 
Sbjct: 811  SMNRSRGDPITQHFGFGTDEWPKEWLEKLDDDGLPLIGTYVEEGDPICAYFDDTLNKTKI 870

Query: 811  NSRKGSESVFVDYVAVDMKNSKNLP--QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLW 868
             +   SE  +++ V +    S      Q   I++R  R P IGDKFSSRHGQKGVCS+ W
Sbjct: 871  KTYHSSEPAYIEEVKLIGDESSKFQELQAITIKYRIRRTPQIGDKFSSRHGQKGVCSRKW 930

Query: 869  PDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKK 928
            P IDMPFS  TG++PD+IINPHAFPSRMTI M +ES+A K G+LHG   D+TP+      
Sbjct: 931  PTIDMPFSE-TGIQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPWT----- 984

Query: 929  TNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHM 988
                   +ES +  D  G+ L   G+NYHG E +YSG  G EL  +I+IG VYYQRLRHM
Sbjct: 985  ------FNESDTPADYFGDQLAKAGYNYHGNEPMYSGATGEELRADIYIGVVYYQRLRHM 1038

Query: 989  VSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYH 1048
            V+DKFQVRSTG ++ +T QP+KGRKR GGIR GEMERD+L+ HG ++LL DRL  CSDY 
Sbjct: 1039 VNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIGHGTSFLLQDRLLNCSDYT 1098

Query: 1049 VADVCSLCGSVLTATFIHPQKRAIREI--------------------GGLPPARAPKKVT 1088
               VC  CG++LT     P+  +I  +                     G  P        
Sbjct: 1099 QTAVCRDCGAILTTQSSVPKIGSISTVRCRRCALKFDEAKRLITKYESGSEPVHIADSEI 1158

Query: 1089 CHACQTSK-----GMETVAMPYVFRYLAAELAAMNIKI 1121
                Q +K        TVA+P+V +YL +ELAAM I++
Sbjct: 1159 WEDGQGNKFVGGGNTTTVAIPFVLKYLDSELAAMGIRL 1196


>gi|354471218|ref|XP_003497840.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 2
            [Cricetulus griseus]
          Length = 1079

 Score =  892 bits (2306), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/1125 (43%), Positives = 667/1125 (59%), Gaps = 92/1125 (8%)

Query: 12   LRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNF 71
            L++L R H++SF+Y + EGLS    H  QA IS+               G P    +   
Sbjct: 35   LQDLTRAHVDSFNYAVLEGLS----HAVQADISWAVN------------GVPKGVIKQFL 78

Query: 72   GQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMV 131
            G  P+M+K++ C+L     Q L+   EEA EMGGYFI+NG+E+V R +I+P++N+P++M+
Sbjct: 79   GYVPIMVKSKLCNLYNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMI 138

Query: 132  RSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLK 191
            R  ++ R  GYT   V + CVR++ S+V + L+Y+ NG+V L F  + + + LP+G VLK
Sbjct: 139  RPKWKSRGLGYTHFGVSMHCVREEHSAVNMNLHYVENGTVMLNFIYRKELFFLPLGFVLK 198

Query: 192  ALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHI 251
            ALV  +D +IF  L           KG          V  +L  V +   +T+ Q L ++
Sbjct: 199  ALVSFSDYQIFQELI----------KGKEEDSFFKNSVSQMLRTVMEEGCSTQKQVLNYL 248

Query: 252  GEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSD 311
            GE F+  +   +       A+ +  + I +HL  + +KF LL  M +KLF+L     + D
Sbjct: 249  GERFRVKLSLPEWYPNEEAAKFLFNECICIHLKSDTEKFYLLCLMTRKLFALARGECMED 308

Query: 312  NPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVME 371
            NPDSL NQE+L PG L  ++LKEK+E+WL   K  +    +      +  NL  I  +  
Sbjct: 309  NPDSLVNQEVLTPGQLFLMFLKEKMENWLASIKIALDKRAQKTNVSINNENLLKIFSM-- 366

Query: 372  KNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFA 431
                 ++    E +L TG L ++TGL   Q +G  V A++LNF+R++S FR VHRGA FA
Sbjct: 367  ---GTELTRPFEYLLATGNLRSKTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFA 423

Query: 432  GLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS 491
             +RTT+VR+LLPESWGFLCPVHTPDG PCGLLNH+T+ C V + +              S
Sbjct: 424  KMRTTTVRRLLPESWGFLCPVHTPDGAPCGLLNHLTAICEVVTKF----------VYTAS 473

Query: 492  ILRVLIGVGMIPSLPKLVKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVS 547
            +  +L G+G+ P     V + P    S    VLLDG +VG +       V   LRR KV 
Sbjct: 474  VPALLCGLGVTP-----VDATPCRPYSDCYPVLLDGVMVGWVDKELAPDVADTLRRFKVL 528

Query: 548  AASVIPDDLEVGYVPLS-LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQ 606
                IP  +EV  VP++     YPGL+LFT+P + VRPV+N+ L  EE     LIG  EQ
Sbjct: 529  REKRIPPWMEVALVPMTGKPSLYPGLFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQ 583

Query: 607  VFMEIRCPDGGDGGRRNAFP--ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAK 664
            +FM +   +         F   +TH+E+ P  +LSV+AN  P+SDHNQSPRNMYQCQM K
Sbjct: 584  LFMNVAIFED------EVFSGISTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGK 637

Query: 665  QTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDM 724
            QTMGF +   + R+D KLY LQTPQ+P+VR   Y  Y +D YP GTNAIVAV++YTGYDM
Sbjct: 638  QTMGFPLLTFQDRSDNKLYRLQTPQSPLVRPCMYDYYSMDNYPIGTNAIVAVISYTGYDM 697

Query: 725  EDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGL 784
            EDAMI+NK+S +RG  HG +Y++E IDLS+   + +       +  D + +   +D DGL
Sbjct: 698  EDAMIVNKASWERGFAHGSVYKSEFIDLSEKFKQGNDNLVFGIKPGDPRVMQK-LDDDGL 756

Query: 785  PYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFR 843
            P++G  +  G+PY S  +  T        K  E+  VD + V   ++ +   K   I  R
Sbjct: 757  PFIGAKLQFGDPYYSYLNLNTGEGFVVYYKSKENCIVDNIKVCSNDTGSGKFKCICITIR 816

Query: 844  HTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLE 903
              RNP IGDKF+SRHGQKG+ S+LWP  DMPF+  +GM PD++ NPH FPSRMTI ML+E
Sbjct: 817  VPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIE 875

Query: 904  SVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLY 963
            S+A K  +LHG   DATPF  S           E  S +   GEML+  G+N++G E LY
Sbjct: 876  SMAGKSAALHGLCHDATPFIFS-----------EESSALGYFGEMLKAAGYNFYGTERLY 924

Query: 964  SGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEM 1023
            SG+ G EL  +IFIG VYYQRLRHMVSDKFQVR+TG  D++T QPI GR   GGIRFGEM
Sbjct: 925  SGISGMELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFGEM 984

Query: 1024 ERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARA 1083
            ERD+LLAHG ++LLHDRL  CSD  VA VC  CGS+L+     P           PP+ +
Sbjct: 985  ERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKP-----------PPSWS 1033

Query: 1084 P---KKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
                +K  C  C  S  ++TV++PYVFRY  AELAAMNIK+ L +
Sbjct: 1034 AMRNRKYNCTVCGRSDTIDTVSVPYVFRYFVAELAAMNIKVKLDV 1078


>gi|207457737|ref|NP_001128800.1| DNA-directed RNA polymerase I subunit RPA2 [Pongo abelii]
          Length = 1135

 Score =  892 bits (2306), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/1161 (42%), Positives = 672/1161 (57%), Gaps = 108/1161 (9%)

Query: 12   LRELVRHHIESFDYMLDEGLS--------------------EMFD--------------- 36
            L+EL R H+ESF+Y + EGL                      + D               
Sbjct: 35   LQELTRAHVESFNYAVHEGLGLAVQAIPPFEFAFKDERISFTILDAVISPPTVPKGTICK 94

Query: 37   -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
                    CR  + +Y GKL AD+ +        ++++    G  P+M+K++ C+L    
Sbjct: 95   EVSVYPAECRGRRCTYRGKLTADISWAVNGISKGIIKQFL--GYVPIMVKSKLCNLYNLP 152

Query: 90   SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
             Q L+   EEA EMGGYFI+NG+E+V R +I+P++N+P++MVR  ++ R  GYT   V +
Sbjct: 153  PQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMVRPKWKTRGPGYTHYGVSM 212

Query: 150  RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
             CVR++ S+V + L+YL NG+V L F  + + + LP+G  LKALV  +D +IF  L    
Sbjct: 213  HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269

Query: 210  DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
                 KE  +     VS+ ++I++ E      +T+ Q L ++GE F+  ++         
Sbjct: 270  ---KGKEDDSFLRNSVSQMLRIVMEE----GCSTQKQVLNYLGECFRVKLNVPDWYPNEQ 322

Query: 270  VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
             AE +    I +HL  N +KF +L  M +KLF+L     + DNPDSL NQE+L PG L  
Sbjct: 323  AAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFL 382

Query: 330  IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
            ++LKEKLE WL   K     + +      +  NL  I  +        +    E +  TG
Sbjct: 383  MFLKEKLEGWLVSIKIAFDKKAQKTNVSMNTDNLMRIFTM-----GIDLTKPFEYLFATG 437

Query: 390  RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
             L ++TGL L Q +G  V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGFL
Sbjct: 438  NLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFL 497

Query: 450  CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
            CPVHTPDGEPCGL+NH+T+ C V + +    +I          L   +GV  I   P   
Sbjct: 498  CPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASI--------PALLCNLGVTPIDGAPHRS 549

Query: 510  KSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS-LGGA 568
             S       VLLDG +VG +       +   LR  KV     IP   EV  +P++     
Sbjct: 550  YS---ECYPVLLDGVMVGWVDKELAPGIADSLRHFKVLREKRIPPWTEVVLIPMTGKPSL 606

Query: 569  YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPAT 628
            YPGL+LFT+P + VRPV+N+ L  EE     LIG  EQ+FM +   +        A   T
Sbjct: 607  YPGLFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQIFMNVAIFED----EVFAGVTT 657

Query: 629  HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTP 688
            H+E+ P  +LSV+AN  P+SDHNQSPRNMYQCQM KQTMGF +   + R+D KLY LQTP
Sbjct: 658  HQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTP 717

Query: 689  QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
            Q+P+VR + Y  Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG  HG +Y++E
Sbjct: 718  QSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSE 777

Query: 749  TIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSW 808
             IDLS+   + D       +  D + L   +D DGLP++G  +  G+PY S  +  T   
Sbjct: 778  FIDLSEKIKQGDSSLVFGMKPGDPRILQK-LDDDGLPFIGAKLQYGDPYYSYLNLNTGES 836

Query: 809  RTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQL 867
                 K  E+  VD + V   ++ +   K   I  R  RNP IGDKF+SRHGQKG+ S+L
Sbjct: 837  FVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRL 896

Query: 868  WPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVK 927
            WP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+A K  +LHG   DATPF  S  
Sbjct: 897  WPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFS-- 953

Query: 928  KTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRH 987
                     E  S ++  GEML+  G+N++G E LYSG+ G EL  +IFIG VYYQRLRH
Sbjct: 954  ---------EENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRH 1004

Query: 988  MVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDY 1047
            MVSDKFQVR+TG  D++T QPI GR   GGIRFGEMERD+LLAHG ++LLHDRL  CSD 
Sbjct: 1005 MVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDR 1064

Query: 1048 HVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP---KKVTCHACQTSKGMETVAMP 1104
             VA VC  CGS+L+     P           PP+ +    +K  C  C  S  ++TV++P
Sbjct: 1065 SVAHVCVKCGSLLSPLLEKP-----------PPSWSAMRNRKYNCTLCNRSDTIDTVSVP 1113

Query: 1105 YVFRYLAAELAAMNIKITLQL 1125
            YVFRY  AELAAMNIK+ L +
Sbjct: 1114 YVFRYFVAELAAMNIKVKLDV 1134


>gi|410337759|gb|JAA37826.1| polymerase (RNA) I polypeptide B, 128kDa [Pan troglodytes]
 gi|410337761|gb|JAA37827.1| polymerase (RNA) I polypeptide B, 128kDa [Pan troglodytes]
          Length = 1135

 Score =  892 bits (2305), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/1161 (42%), Positives = 672/1161 (57%), Gaps = 108/1161 (9%)

Query: 12   LRELVRHHIESFDYMLDEGLS--------------------EMFD--------------- 36
            L+EL R H+ESF+Y + EGL                      + D               
Sbjct: 35   LQELTRAHVESFNYAVHEGLGLAVQAIPPFEFAFKDERISFTILDAVISPPTVPKGTICK 94

Query: 37   -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
                    CR  + +Y GKL AD+ +        ++++    G  P+M+K++ C+L+   
Sbjct: 95   EANVYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQFL--GYVPIMVKSKLCNLRNLP 152

Query: 90   SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
             Q L+   EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R  ++ R  GYT   V +
Sbjct: 153  PQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSM 212

Query: 150  RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
             CVR++ S+V + L+YL NG+V L F  + + + LP+G  LKALV  +D +IF  L    
Sbjct: 213  HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269

Query: 210  DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
                 KE  +     VS+ ++I++ E       T+ Q L ++GE F+  ++         
Sbjct: 270  ---KGKEDDSFLRNSVSQMLRIVMEE----GCLTQKQVLNYLGECFRVKLNVPDWYPNEQ 322

Query: 270  VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
             AE +    I +HL  N +KF +L  M +KLF+L     + DNPDSL NQE+L PG L  
Sbjct: 323  AAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFL 382

Query: 330  IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
            ++LKEKLE WL   K     + +      +  NL  I  +        +    E +  TG
Sbjct: 383  MFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMKIFTM-----GIDLTKPFEYLFATG 437

Query: 390  RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
             L ++TGL L Q +G  V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGFL
Sbjct: 438  NLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFL 497

Query: 450  CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
            CPVHTPDGEPCGL+NH+T+ C V + +    +I          L   +GV  I   P   
Sbjct: 498  CPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASI--------PALLCNLGVTPIDGAPHRS 549

Query: 510  KSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS-LGGA 568
             S       VLLDG +VG +       +   LR  KV     IP   EV  +P++     
Sbjct: 550  YS---ECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPSREEVVLIPMTGKPSL 606

Query: 569  YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPAT 628
            YPGL+LFT+P + VRPV+N+ L  EE     LIG  EQ+FM +   +        A   T
Sbjct: 607  YPGLFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQIFMNVAIFED----EVFAGVTT 657

Query: 629  HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTP 688
            H+E+ P  +LSV+AN  P+SDHNQSPRNMYQCQM KQTMGF +   + R+D KLY LQTP
Sbjct: 658  HQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPILTYQDRSDNKLYRLQTP 717

Query: 689  QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
            Q+P+VR + Y  Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG  HG +Y++E
Sbjct: 718  QSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSE 777

Query: 749  TIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSW 808
             IDLS+   + D       +  D + L   +D DGLP++G  +  G+PY S  +  T   
Sbjct: 778  FIDLSEKIKQGDSSLVFGIKPGDPRVLQK-LDDDGLPFIGAKLQYGDPYYSYLNLNTGES 836

Query: 809  RTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQL 867
                 K  E+  VD + V   ++ +   K   I  R  RNP IGDKF+SRHGQKG+ S+L
Sbjct: 837  FVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRL 896

Query: 868  WPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVK 927
            WP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+A K  +LHG   DATPF  S  
Sbjct: 897  WPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFS-- 953

Query: 928  KTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRH 987
                     E  S ++  GEML+  G+N++G E LYSG+ G EL  +IFIG VYYQRLRH
Sbjct: 954  ---------EENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRH 1004

Query: 988  MVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDY 1047
            MVSDKFQVR+TG  D++T QPI GR   GGIRFGEMERD+LLAHG ++LLHDRL  CSD 
Sbjct: 1005 MVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDR 1064

Query: 1048 HVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP---KKVTCHACQTSKGMETVAMP 1104
             VA VC  CGS+L+     P           PP+ +    +K  C  C  S  ++TV++P
Sbjct: 1065 SVAHVCVKCGSLLSPLLEKP-----------PPSWSAMRNRKYNCTLCNRSDTIDTVSVP 1113

Query: 1105 YVFRYLAAELAAMNIKITLQL 1125
            YVFRY  AELAAMNIK+ L +
Sbjct: 1114 YVFRYFVAELAAMNIKVKLDV 1134


>gi|426336845|ref|XP_004031665.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 2
            [Gorilla gorilla gorilla]
          Length = 1079

 Score =  892 bits (2305), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/1123 (43%), Positives = 670/1123 (59%), Gaps = 88/1123 (7%)

Query: 12   LRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNF 71
            L+EL R H+ESF+Y + EGL        QA I++            ++  S  + ++F  
Sbjct: 35   LQELTRAHVESFNYAVHEGLGLAV----QADINWA-----------VNGISKGIIKQF-L 78

Query: 72   GQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMV 131
            G  P+M+K++ C+L+    Q L+   EEA EMGGYFI+NG+E+V R +I+P++N+P++M+
Sbjct: 79   GYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMI 138

Query: 132  RSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLK 191
            R  ++ R  GYT   V + CVR++ S+V + L+YL NG+V L F  + + + LP+G  LK
Sbjct: 139  RPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALK 198

Query: 192  ALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHI 251
            ALV  +D +IF  L         KE  +     VS+ ++I++ E      +T+ Q L ++
Sbjct: 199  ALVSFSDYQIFQELI------KGKEDDSFLRNSVSQMLRIVMEE----GCSTQKQVLNYL 248

Query: 252  GEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSD 311
            GE F+  ++          AE +    I +HL  N +KF +L  M +KLF+L     + D
Sbjct: 249  GECFRVKLNVPDWYPNEQAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMED 308

Query: 312  NPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVME 371
            NPDSL NQE+L PG L  ++LKEKLE WL   K     + +      +  NL  I  +  
Sbjct: 309  NPDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTNVSMNTDNLMRIFAM-- 366

Query: 372  KNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFA 431
                  +    E +  TG L ++TGL L Q +G  V A++LNF+R++S FR VHRGA FA
Sbjct: 367  ---GIDLTKPFEYLFATGNLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFA 423

Query: 432  GLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS 491
             +RTT+VR+LLPESWGFLCPVHTPDGEPCGL+NH+T+ C V + +              S
Sbjct: 424  KMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQF----------VYTAS 473

Query: 492  ILRVLIGVGMIPSLPKLVKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVS 547
            I  +L  +G+ P     +   P    S    VLLDG +VG +       +   LR  KV 
Sbjct: 474  IPALLCNLGVTP-----IDGAPHRSYSECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVL 528

Query: 548  AASVIPDDLEVGYVPLS-LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQ 606
                IP  +EV  +P++     YPGL+LFT+P + VRPV+N+ L  EE     LIG  EQ
Sbjct: 529  REKRIPPWMEVVLIPMTGKPSLYPGLFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQ 583

Query: 607  VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQT 666
            +FM +   +        A   TH+E+ P  +LSV+AN  P+SDHNQSPRNMYQCQM KQT
Sbjct: 584  IFMNVAIFED----EVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQT 639

Query: 667  MGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMED 726
            MGF +   + R+D KLY LQTPQ+P+VR + Y  Y +D YP GTNAIVAV++YTGYDMED
Sbjct: 640  MGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMED 699

Query: 727  AMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPY 786
            AMI+NK+S +RG  HG +Y++E IDLS+   + D       +  D + L   +D DGLP+
Sbjct: 700  AMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDTSLVFGIKPGDPRVLQK-LDDDGLPF 758

Query: 787  VGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHT 845
            +G  +  G+PY S  +  T        K  E+  VD + V   ++ +   K   I  R  
Sbjct: 759  IGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVP 818

Query: 846  RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
            RNP IGDKF+SRHGQKG+ S+LWP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+
Sbjct: 819  RNPTIGDKFASRHGQKGILSRLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESM 877

Query: 906  AAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSG 965
            A K  +LHG   DATPF  S           E  S ++  GEML+  G+N++G E LYSG
Sbjct: 878  AGKSAALHGLCHDATPFIFS-----------EENSALEYFGEMLKAAGYNFYGTERLYSG 926

Query: 966  VYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMER 1025
            + G EL  +IFIG VYYQRLRHMVSDKFQVR+TG  D++T QPI GR   GGIRFGEMER
Sbjct: 927  ISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMER 986

Query: 1026 DSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP- 1084
            D+LLAHG ++LLHDRL  CSD  VA VC  CGS+L+     P           PP+ +  
Sbjct: 987  DALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKP-----------PPSWSAM 1035

Query: 1085 --KKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
              +K  C  C  S  ++TV++PYVFRY  AELAAMNIK+ L +
Sbjct: 1036 RNRKYNCTLCNRSDTIDTVSVPYVFRYFVAELAAMNIKVKLDV 1078


>gi|332814147|ref|XP_001144997.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 4 [Pan
            troglodytes]
          Length = 1079

 Score =  892 bits (2305), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/1123 (43%), Positives = 670/1123 (59%), Gaps = 88/1123 (7%)

Query: 12   LRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNF 71
            L+EL R H+ESF+Y + EGL        QA I++            ++  S  + ++F  
Sbjct: 35   LQELTRAHVESFNYAVHEGLGLAV----QADINWA-----------VNGISKGIIKQF-L 78

Query: 72   GQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMV 131
            G  P+M+K++ C+L+    Q L+   EEA EMGGYFI+NG+E+V R +I+P++N+P++M+
Sbjct: 79   GYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMI 138

Query: 132  RSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLK 191
            R  ++ R  GYT   V + CVR++ S+V + L+YL NG+V L F  + + + LP+G  LK
Sbjct: 139  RPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALK 198

Query: 192  ALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHI 251
            ALV  +D +IF  L         KE  +     VS+ ++I++ E       T+ Q L ++
Sbjct: 199  ALVSFSDYQIFQELI------KGKEDDSFLRNSVSQMLRIVMEE----GCLTQKQVLNYL 248

Query: 252  GEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSD 311
            GE F+  ++          AE +    I +HL  N +KF +L  M +KLF+L     + D
Sbjct: 249  GECFRVKLNVPDWYPNEQAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMED 308

Query: 312  NPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVME 371
            NPDSL NQE+L PG L  ++LKEKLE WL   K     + +      +  NL  I  +  
Sbjct: 309  NPDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMKIFTM-- 366

Query: 372  KNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFA 431
                  +    E +  TG L ++TGL L Q +G  V A++LNF+R++S FR VHRGA FA
Sbjct: 367  ---GIDLTKPFEYLFATGNLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFA 423

Query: 432  GLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS 491
             +RTT+VR+LLPESWGFLCPVHTPDGEPCGL+NH+T+ C V + +              S
Sbjct: 424  KMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQF----------VYTAS 473

Query: 492  ILRVLIGVGMIPSLPKLVKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVS 547
            I  +L  +G+ P     +   P    S    VLLDG +VG +       +   LR  KV 
Sbjct: 474  IPALLCNLGVTP-----IDGAPHRSYSECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVL 528

Query: 548  AASVIPDDLEVGYVPLSLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQ 606
                IP  +EV  +P++   + YPGL+LFT+P + VRPV+N+ L  EE     LIG  EQ
Sbjct: 529  REKRIPPWMEVVLIPMTGKPSLYPGLFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQ 583

Query: 607  VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQT 666
            +FM +   +        A   TH+E+ P  +LSV+AN  P+SDHNQSPRNMYQCQM KQT
Sbjct: 584  IFMNVAIFED----EVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQT 639

Query: 667  MGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMED 726
            MGF +   + R+D KLY LQTPQ+P+VR + Y  Y +D YP GTNAIVAV++YTGYDMED
Sbjct: 640  MGFPILTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMED 699

Query: 727  AMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPY 786
            AMI+NK+S +RG  HG +Y++E IDLS+   + D       +  D + L   +D DGLP+
Sbjct: 700  AMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQK-LDDDGLPF 758

Query: 787  VGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHT 845
            +G  +  G+PY S  +  T        K  E+  VD + V   ++ +   K   I  R  
Sbjct: 759  IGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVP 818

Query: 846  RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
            RNP IGDKF+SRHGQKG+ S+LWP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+
Sbjct: 819  RNPTIGDKFASRHGQKGILSRLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESM 877

Query: 906  AAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSG 965
            A K  +LHG   DATPF  S           E  S ++  GEML+  G+N++G E LYSG
Sbjct: 878  AGKSAALHGLCHDATPFIFS-----------EENSALEYFGEMLKAAGYNFYGTERLYSG 926

Query: 966  VYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMER 1025
            + G EL  +IFIG VYYQRLRHMVSDKFQVR+TG  D++T QPI GR   GGIRFGEMER
Sbjct: 927  ISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMER 986

Query: 1026 DSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP- 1084
            D+LLAHG ++LLHDRL  CSD  VA VC  CGS+L+     P           PP+ +  
Sbjct: 987  DALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKP-----------PPSWSAM 1035

Query: 1085 --KKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
              +K  C  C  S  ++TV++PYVFRY  AELAAMNIK+ L +
Sbjct: 1036 RNRKYNCTLCNRSDTIDTVSVPYVFRYFVAELAAMNIKVKLDV 1078


>gi|38614338|gb|AAH60656.1| Polymerase (RNA) I polypeptide B [Mus musculus]
          Length = 1135

 Score =  892 bits (2305), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1168 (42%), Positives = 682/1168 (58%), Gaps = 122/1168 (10%)

Query: 12   LRELVRHHIESFDYMLDEGLSEMFD----------------------------------- 36
            L++L R H++SF+Y   EGLS                                       
Sbjct: 35   LQDLTRAHVDSFNYAALEGLSHAVQAIPPFEFAFKDERISLTIVDAVISPPSVPKGTICK 94

Query: 37   -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
                    CR  K +Y G+L AD+ +        ++++    G  P+M+K++ C+L    
Sbjct: 95   DLNVYPAECRGRKSTYRGRLTADISWAVNGVPKGIIKQFL--GYVPIMVKSKLCNLYNLP 152

Query: 90   SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
             + L+   EEA EMGGYFI+NG+E+V R +I+P++N+P++MVR  ++ R  GYT   V +
Sbjct: 153  PRVLIEHHEEAEEMGGYFIINGIEKVIRMLIVPRRNFPIAMVRPKWKSRGLGYTQFGVSM 212

Query: 150  RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
            RCVR++ S+V + L+Y+ NG+V L F  + + + LP+G  LKALV  +D +IF  L    
Sbjct: 213  RCVREEHSAVNMNLHYVENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269

Query: 210  DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
                 KE+ +     VS+ ++I++ E       ++ Q L ++GE F+  +          
Sbjct: 270  ---KGKEEDSFFRNSVSQMLRIVIEE----GCHSQKQVLNYLGECFRVKLSLPDWYPNVE 322

Query: 270  VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
             AE ++   I +HL  N DKF LL  M +KLF+L     + DNPDSL NQE+  PG L  
Sbjct: 323  AAEFLLNQCICIHLQSNTDKFYLLCLMTRKLFALARGECMDDNPDSLVNQEVFSPGQLFL 382

Query: 330  IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
            ++LKEK+E+WL   K ++    +      +  NL  I  +       ++    E +L TG
Sbjct: 383  MFLKEKMENWLVSIKIVLDKRAQKANVSINNENLMKIFSM-----GTELTRPFEYLLATG 437

Query: 390  RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
             L ++TGL   Q +G  V A++LNFLR++S FR VHRGA+FA +RTT+VR+LLPESWGFL
Sbjct: 438  NLRSKTGLGFLQDSGLCVVADKLNFLRYLSHFRCVHRGAAFAKMRTTTVRRLLPESWGFL 497

Query: 450  CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
            CPVHTPDG PCGLLNH+T+ C V + +              SI  +L G+G+ P     V
Sbjct: 498  CPVHTPDGAPCGLLNHLTAVCEVVTKF----------VYTASIPALLCGLGVTP-----V 542

Query: 510  KSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS- 564
             + P    S    VLLDG +VG +      +V   LRR KV     IP  +EV  +P++ 
Sbjct: 543  DTAPCRPYSDCYPVLLDGVMVGWVDKDLAPEVADTLRRFKVLREKRIPPWMEVALIPMTG 602

Query: 565  LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRN 623
                YPGL+LFT+P + VRPV+N+ L  EE     LIG  EQ+FM +    D   GG   
Sbjct: 603  KPSLYPGLFLFTTPCRLVRPVQNLELGREE-----LIGTMEQLFMNVAIFEDEVFGGI-- 655

Query: 624  AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
               +TH+E+ P  +LSV+AN  P+SDHNQSPRNMYQCQM KQTMGF +   + R+D KLY
Sbjct: 656  ---STHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQNRSDNKLY 712

Query: 684  HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
             LQTPQ+P+VR   Y  Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG  HG 
Sbjct: 713  RLQTPQSPLVRPCMYDFYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGS 772

Query: 744  IYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDK 803
            +Y++E IDLS+   + +       +  D + +   +D DGLP++G  +  G+PY S  + 
Sbjct: 773  VYKSEFIDLSEKFKQGEDNLVFGVKPGDPRVMQK-LDDDGLPFIGAKLEYGDPYYSYLNL 831

Query: 804  TTNSWRTNSRKGSESVFVDYVAV---DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQ 860
             T        K  E+  VD + V   DM + K   +   I  R  RNP IGDKF+SRHGQ
Sbjct: 832  NTGEGFVVYYKSKENCVVDNIKVCSNDMGSGKF--KCICITVRIPRNPTIGDKFASRHGQ 889

Query: 861  KGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDAT 920
            KG+ S+LWP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+A K  +LHG   DAT
Sbjct: 890  KGILSRLWPAEDMPFTE-SGMMPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDAT 948

Query: 921  PFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPV 980
            PF  S           E  S ++  GEML+  G+N++G E LYSG+ G EL  +IFIG V
Sbjct: 949  PFIFS-----------EENSALEYFGEMLKAAGYNFYGTERLYSGISGMELEADIFIGVV 997

Query: 981  YYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDR 1040
            YYQRLRHMVSDKFQVR+TG  D++T QP+ GR   GGIRFGEMERD+LLAHG ++LLHDR
Sbjct: 998  YYQRLRHMVSDKFQVRTTGARDKVTNQPLGGRNVQGGIRFGEMERDALLAHGTSFLLHDR 1057

Query: 1041 LHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP---KKVTCHACQTSKG 1097
            L  CSD  VA +C  CGS+L+     P           PP+ +    +K  C  C  S  
Sbjct: 1058 LFNCSDRSVAHMCVECGSLLSPLLEKP-----------PPSWSAMRNRKYNCTVCGRSDT 1106

Query: 1098 METVAMPYVFRYLAAELAAMNIKITLQL 1125
            ++TV++PYVFRY  AELAAMNIK+ L +
Sbjct: 1107 IDTVSVPYVFRYFVAELAAMNIKVKLDV 1134


>gi|402891932|ref|XP_003909182.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 1
            [Papio anubis]
          Length = 1135

 Score =  892 bits (2304), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/1165 (42%), Positives = 675/1165 (57%), Gaps = 116/1165 (9%)

Query: 12   LRELVRHHIESFDYMLDEGLS--------------------EMFD--------------- 36
            L+EL R H+ESF+Y + EGL                      + D               
Sbjct: 35   LQELTRAHVESFNYAVHEGLGLAVQAIPPFEFAFKDERISFTILDAVISPPTVPKGTICK 94

Query: 37   -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
                    CR  + +Y GKL AD+ +        ++++    G  P+M+K++ C+L    
Sbjct: 95   EVSVYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQ--CLGYVPIMVKSKLCNLHSLP 152

Query: 90   SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
             Q L+   EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R  ++ R  GYT   V +
Sbjct: 153  PQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSM 212

Query: 150  RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
             CVR++ S+V + L+YL NG+V L F  + + + LP+G  LKALV  +D +IF  L    
Sbjct: 213  HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269

Query: 210  DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
                 KE  +     VS+ ++I++ E      +T+ Q L ++GE F+  ++         
Sbjct: 270  ---KGKEDDSFLRNSVSQMLRIVMEE----GCSTQKQVLNYLGECFRVKLNVPDWYPNEQ 322

Query: 270  VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
             AE +    I +HL  + +KF +L  M +KLF+L     + DNPDSL NQE+L PG L  
Sbjct: 323  AAEFLFNQCICIHLKSSTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFL 382

Query: 330  IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
            ++LKEKLE WL   K     + +      +  NL  I  +        +    E +  TG
Sbjct: 383  MFLKEKLEGWLVSIKIAFDKKAQKTNVSMNTDNLMRIFTM-----GIDLTKPFEYLFATG 437

Query: 390  RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
             L ++TGL L Q +G  V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGFL
Sbjct: 438  NLRSKTGLGLLQNSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFL 497

Query: 450  CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
            CPVHTPDGEPCGL+NH+T+ C V + +              SI  +L  +G+ P     V
Sbjct: 498  CPVHTPDGEPCGLMNHLTAVCEVVTQF----------VYTASIPALLCNLGVTP-----V 542

Query: 510  KSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS- 564
               P    S    VLLDG +VG +       +   LR  KV     IP  +EV  +P++ 
Sbjct: 543  DGAPHRPYSECYPVLLDGVMVGWVDKELAPGIADSLRHFKVLREKRIPPWMEVVLIPMTG 602

Query: 565  LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNA 624
                YPGL+LFT+P + VRPV+N+ L  EE     LIG  EQ+FM +   +        A
Sbjct: 603  KPSLYPGLFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQIFMNVAIFED----EVFA 653

Query: 625  FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
               TH+E+ P  +LSV+AN  P+SDHNQSPRNMYQCQM KQTMGF +   + R+D KLY 
Sbjct: 654  GVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYR 713

Query: 685  LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI 744
            LQTPQ+P+VR + Y  Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG  HG +
Sbjct: 714  LQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSV 773

Query: 745  YQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT 804
            Y++E IDLS+   + D       +  D + L   +D DGLP++G  +  G+PY S  +  
Sbjct: 774  YKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQK-LDDDGLPFIGAKLQYGDPYYSYLNLN 832

Query: 805  TNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGV 863
            T        K  E+  VD + V   ++ +   K   I  R  RNP IGDKF+SRHGQKG+
Sbjct: 833  TGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGI 892

Query: 864  CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFA 923
             S+LWP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+A K  +LHG   DATPF 
Sbjct: 893  LSRLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFI 951

Query: 924  NSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQ 983
             S           E  S ++  GEML+  G+N++G E LYSG+ G EL  +IFIG VYYQ
Sbjct: 952  FS-----------EENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQ 1000

Query: 984  RLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHT 1043
            RLRHMVSDKFQVR+TG  D++T QPI GR   GGIRFGEMERD+LLAHG ++LLHDRL  
Sbjct: 1001 RLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFN 1060

Query: 1044 CSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP---KKVTCHACQTSKGMET 1100
            CSD  VA VC  CGS+L+     P           PP+ +    +K  C  C  S  ++T
Sbjct: 1061 CSDRSVAHVCVKCGSLLSPLLEKP-----------PPSWSAMRNRKYNCTLCNRSDTIDT 1109

Query: 1101 VAMPYVFRYLAAELAAMNIKITLQL 1125
            V++PYVFRY  AELAAMNIK+ L +
Sbjct: 1110 VSVPYVFRYFVAELAAMNIKVKLDV 1134


>gi|260809401|ref|XP_002599494.1| hypothetical protein BRAFLDRAFT_223894 [Branchiostoma floridae]
 gi|229284773|gb|EEN55506.1| hypothetical protein BRAFLDRAFT_223894 [Branchiostoma floridae]
          Length = 1140

 Score =  892 bits (2304), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/1177 (42%), Positives = 677/1177 (57%), Gaps = 113/1177 (9%)

Query: 2    ARKKSADFEPLRELVRHHIESFDYMLDEGLSEMFD------------------------- 36
             R +     PL++LVR H+ESF++ L EGLS                             
Sbjct: 21   GRPEKTQHRPLQDLVRPHVESFNWFLREGLSLAVQAIPKLDFSLSNGRRISLSYVDASVG 80

Query: 37   -------------------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVM 77
                                CR+   +Y   L A + +  +D  +    ER   G+ P+M
Sbjct: 81   VPTVAQGNTFSRTLKVYPAECRERGTTYRAGLQARIAWS-VDGVNQGSVERM-LGEIPLM 138

Query: 78   LKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRD 137
            +K+  C++      +L+   EEA EMGGYFI NG+E+V R +++P++NYPM++VR S++ 
Sbjct: 139  VKSAHCNITKLTPAELIQRHEEAEEMGGYFINNGIEKVVRMLVMPRRNYPMAIVRPSWKG 198

Query: 138  RREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTN 197
            R + YT+  V +RCV KDQ++ T+ L+YL NG+V L F  + +++ +P+ I+LKALV+T 
Sbjct: 199  RGKLYTEYGVSMRCVTKDQTAATIVLHYLTNGTVTLCFVYKKEQFFVPLIIILKALVETT 258

Query: 198  DLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ- 256
            D  I++ L           KG   +      V  +L + Q+  L T+   L++IGE F+ 
Sbjct: 259  DQHIYSELI----------KGKEDNSFFKGCVASMLRQAQNEGLMTQAGILKYIGERFRV 308

Query: 257  --PVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPD 314
              PV D    E    V + ++R  + +HL+ + DKFN L+ M QKLF+L       +N D
Sbjct: 309  KLPVPDWYTDEE---VGQFLLRQCVCIHLDSDWDKFNTLVLMTQKLFALAKGECSVENQD 365

Query: 315  SLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNP 374
            S   QE+LL GHL    LK+KLE WL + +  I    ++ G  +    L  ++ +     
Sbjct: 366  SPMMQEMLLAGHLYLTILKDKLELWLTQLRYGIDKRSQDKGPSY---KLDTVEMMSAMRL 422

Query: 375  SKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLR 434
               +   +E  + TG + +++ L L Q AG TV A++LNF+R++S FR VHRGA FA +R
Sbjct: 423  CSDVTRGMEHFMATGSVVSKSNLGLMQTAGLTVVADKLNFMRYLSHFRCVHRGAFFAEMR 482

Query: 435  TTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILR 494
            TTSVRKLLPE+WGFLCPVHTPDG PCGLLNHMT++C   +                 I +
Sbjct: 483  TTSVRKLLPEAWGFLCPVHTPDGAPCGLLNHMTASCEAVT----------LQPTTVHIPK 532

Query: 495  VLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPD 554
            +L  +GM P L     + P    +VLLDGRVVG + ++    +   LR LKV+    IP 
Sbjct: 533  LLCSLGMAP-LDSPAPAPPVDCYTVLLDGRVVGRVAANMAPDMARKLRMLKVTREGKIPV 591

Query: 555  DLEVGYVPLS-LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC 613
              E+  VP +     +PGL+LFT+P + +RPVRN+      +  +E+IG FEQV+M I C
Sbjct: 592  MTEIVLVPKTGKASQFPGLFLFTTPARMMRPVRNLF-----TGTVEMIGSFEQVYMNI-C 645

Query: 614  --PDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSV 671
              P+    G       TH+E+  T +LSV A+ TP+SD NQSPRNMYQCQM KQTMG  +
Sbjct: 646  VRPEEAHPGV-----TTHQELRETSILSVAASFTPFSDFNQSPRNMYQCQMGKQTMGTPL 700

Query: 672  QALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILN 731
             A   R D KLY +Q PQ+P VR   Y  Y +D+YP GTNA+VAV++YTGYDMEDAMILN
Sbjct: 701  HAFGHRTDNKLYRIQNPQSPTVRPYAYDHYHMDDYPLGTNAVVAVISYTGYDMEDAMILN 760

Query: 732  KSSVDRGMCHGQIYQTETIDLSDDGNKVDRG--QKLFRRNKDAKSLHSVIDSDGLPYVGQ 789
            KSS++RG  HG IY+TE I L D      RG    +F   +  K +   +D DGLP +G 
Sbjct: 761  KSSLERGFGHGTIYKTEIISLRDLAQSA-RGPVTLVFGCAEGDKRVEGRLDDDGLPPIGS 819

Query: 790  MIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLP--QKANIRFRHTRN 847
             +  G+P+ S  DK T   R    K  E   VD + V + N +      K  I  R  RN
Sbjct: 820  KLETGDPFYSYVDKQTGEARVVLYKNQEKAIVDNIKV-LGNDQGTSDMNKVAIVMRINRN 878

Query: 848  PIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAA 907
            PIIGDKFSSRHGQKGVCSQ WP  DMPF+   GM PD+I NPH FPSRMTI M++ES+A 
Sbjct: 879  PIIGDKFSSRHGQKGVCSQQWPVEDMPFTE-GGMTPDIIFNPHGFPSRMTIGMMIESMAG 937

Query: 908  KGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVY 967
            K  + HG   DATPF  S           E  S +D  G ML   G+NY+G E +YSGV 
Sbjct: 938  KSAAQHGLCHDATPFTFS-----------EDNSAIDYYGRMLIEAGYNYYGHERMYSGVT 986

Query: 968  GTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDS 1027
            G E   +IFIG VYYQRLRHMV+DKFQVR+TG +D +T QPIKGRKR GGIRFGEMERDS
Sbjct: 987  GVEFEADIFIGVVYYQRLRHMVADKFQVRTTGPIDIVTHQPIKGRKRAGGIRFGEMERDS 1046

Query: 1028 LLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKV 1087
            LLAHGA +LL DRL  CSD     VC+ CGS+L+     P          +P  R    +
Sbjct: 1047 LLAHGATFLLQDRLFNCSDKSTCRVCTQCGSILSPLLDKPLL-----FCSVPQCRVFCTL 1101

Query: 1088 TCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQ 1124
             C     S   + +A+PYVFRYL AELAAMNIK+T++
Sbjct: 1102 CCSNSVFSPPPQLIAVPYVFRYLVAELAAMNIKVTME 1138


>gi|397465558|ref|XP_003804558.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 2 [Pan
            paniscus]
          Length = 1079

 Score =  892 bits (2304), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/1123 (43%), Positives = 669/1123 (59%), Gaps = 88/1123 (7%)

Query: 12   LRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNF 71
            L+EL R H+ESF+Y + EGL        QA I++            ++  S  + ++F  
Sbjct: 35   LQELTRAHVESFNYAVHEGLGLAV----QADINWA-----------VNGISKGIIKQF-L 78

Query: 72   GQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMV 131
            G  P+M+K++ C+L+    Q L+   EEA EMGGYFI+NG+E+V R +I+P++N+P++M+
Sbjct: 79   GYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMI 138

Query: 132  RSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLK 191
            R  ++ R  GYT   V + CVR++ S+V + L+YL NG+V L F  + + + LP+G  LK
Sbjct: 139  RPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALK 198

Query: 192  ALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHI 251
            ALV  +D +IF  L         KE  +     VS+ ++I++ E       T+ Q L ++
Sbjct: 199  ALVSFSDYQIFQELI------KGKEDDSFLRNSVSQMLRIVMEE----GCLTQKQVLNYL 248

Query: 252  GEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSD 311
            GE F+  ++          AE +    I +HL  N +KF +L  M +KLF+L     + D
Sbjct: 249  GECFRVKLNVPDWYPNEQAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMED 308

Query: 312  NPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVME 371
            NPDSL NQE+L PG L  ++LKEKLE WL   K     + +      +  NL  I  +  
Sbjct: 309  NPDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMKIFTM-- 366

Query: 372  KNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFA 431
                  +    E +  TG L ++TGL L Q +G  V A++LNF+R++S FR VHRGA FA
Sbjct: 367  ---GIDLTKPFEYLFATGNLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFA 423

Query: 432  GLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS 491
             +RTT+VR+LLPESWGFLCPVHTPDGEPCGL+NH+T+ C V + +              S
Sbjct: 424  KMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQF----------VYTAS 473

Query: 492  ILRVLIGVGMIPSLPKLVKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVS 547
            I  +L  +G+ P     +   P    S    VLLDG +VG +       +   LR  KV 
Sbjct: 474  IPALLCNLGVTP-----IDGAPHRSYSECYPVLLDGVMVGWVDKDLAPGITDSLRHFKVL 528

Query: 548  AASVIPDDLEVGYVPLS-LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQ 606
                IP  +EV  +P++     YPGL+LFT+P + VRPV+N+ L  EE     LIG  EQ
Sbjct: 529  REKRIPPWMEVVLIPMTGKPSLYPGLFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQ 583

Query: 607  VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQT 666
            +FM +   +        A   TH+E+ P  +LSV+AN  P+SDHNQSPRNMYQCQM KQT
Sbjct: 584  IFMNVAIFED----EVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQT 639

Query: 667  MGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMED 726
            MGF +   + R+D KLY LQTPQ+P+VR + Y  Y +D YP GTNAIVAV++YTGYDMED
Sbjct: 640  MGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMED 699

Query: 727  AMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPY 786
            AMI+NK+S +RG  HG +Y++E IDLS+   + D       +  D + L   +D DGLP+
Sbjct: 700  AMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQK-LDDDGLPF 758

Query: 787  VGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHT 845
            +G  +  G+PY S  +  T        K  E+  VD + V   ++ +   K   I  R  
Sbjct: 759  IGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVP 818

Query: 846  RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
            RNP IGDKF+SRHGQKG+ S+LWP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+
Sbjct: 819  RNPTIGDKFASRHGQKGILSRLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESM 877

Query: 906  AAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSG 965
            A K  +LHG   DATPF  S           E  S ++  GEML+  G+N++G E LYSG
Sbjct: 878  AGKSAALHGLCHDATPFIFS-----------EENSALEYFGEMLKAAGYNFYGTERLYSG 926

Query: 966  VYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMER 1025
            + G EL  +IFIG VYYQRLRHMVSDKFQVR+TG  D++T QPI GR   GGIRFGEMER
Sbjct: 927  ISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMER 986

Query: 1026 DSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP- 1084
            D+LLAHG ++LLHDRL  CSD  VA VC  CGS+L+     P           PP+ +  
Sbjct: 987  DALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKP-----------PPSWSAM 1035

Query: 1085 --KKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
              +K  C  C  S  ++TV++PYVFRY  AELAAMNIK+ L +
Sbjct: 1036 RNRKYNCTLCNRSDTIDTVSVPYVFRYFVAELAAMNIKVKLDV 1078


>gi|410955300|ref|XP_003984294.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 1
            [Felis catus]
          Length = 1135

 Score =  892 bits (2304), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/1166 (42%), Positives = 677/1166 (58%), Gaps = 118/1166 (10%)

Query: 12   LRELVRHHIESFDYMLDEGLSEMFD----------------------------------- 36
            L+EL R H+ESF+Y + EGLS                                       
Sbjct: 35   LQELTRAHVESFNYAVREGLSHAVQAIPPFEFAFKDERISLTIVDAVISPPMVPKGNICK 94

Query: 37   -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
                    CR  + +Y GKL AD+ +        V+++    G  P+M+K++ C+L    
Sbjct: 95   ELNIYPAECRGRRSTYRGKLTADISWAVNGISKGVIKQFL--GYVPIMVKSKLCNLYNLP 152

Query: 90   SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
             + L+   EEA EMGGYFI+NG+E+V R +I+P++N+P++MVR  ++ R  GYT   V +
Sbjct: 153  PKALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMVRPKWKTRGPGYTQYGVSM 212

Query: 150  RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
             CVR++ S+V + L+YL NG+V L F  + + + LP+G  LKALV+ +D +IF  L    
Sbjct: 213  HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVNFSDYQIFQELI--- 269

Query: 210  DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
                 KE+ +     +S+ ++I++ E      +T+ Q L ++GE F+  +          
Sbjct: 270  ---KGKEEDSFFRNSISQMLRIVMEE----GCSTQKQVLNYLGECFRVKLSLPDWYPNEQ 322

Query: 270  VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
             AE +    I +HL  + +KF +L  M +KLF+L     + +NPDSL NQE+L PG L  
Sbjct: 323  AAEFLFNQCICIHLKSSTEKFYMLCLMTRKLFALAKGECMEENPDSLVNQEVLTPGQLFL 382

Query: 330  IYLKEKLEDWLRKGKKLIQDEIENNGKKFDF-FNLANIKKVMEKNPSKQIGTSIETMLKT 388
            ++LKEK+E WL      I+  ++   +K +   N  N+ K+        +    E +L T
Sbjct: 383  MFLKEKMEAWLVS----IKIALDKRAQKANVSINTENLMKIFSM--GTDLTKPFEYLLAT 436

Query: 389  GRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGF 448
            G L ++TGL   Q +G  V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGF
Sbjct: 437  GNLRSKTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGF 496

Query: 449  LCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKL 508
            LCPVHTPDGEPCGL+NH+T+ C V + +              SI  +L  +G+ P     
Sbjct: 497  LCPVHTPDGEPCGLMNHLTAVCEVVTQF----------VYTASIPALLCSLGVTP----- 541

Query: 509  VKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS 564
            V   P    S    VLLDG +VG +       V   LR  KV     IP  +EV  +P++
Sbjct: 542  VDGAPHRPYSECYPVLLDGVMVGWVDKDLAPGVADSLRHFKVLREKRIPPWMEVALIPMT 601

Query: 565  -LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRN 623
                 YPGL+LFT+P + VRPV+N+ L  EE     LIG  EQ+FM I   +        
Sbjct: 602  GKPSLYPGLFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQIFMNIAIFED----EVL 652

Query: 624  AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
            A   TH+E+ P  +LSV+AN  P+SDHNQSPRNMYQCQM KQTMGF +   + R+D KLY
Sbjct: 653  AGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQARSDNKLY 712

Query: 684  HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
             LQTPQ+P+VR   Y  Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG  HG 
Sbjct: 713  RLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGS 772

Query: 744  IYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDK 803
            +Y++E IDLS+   + D       +  D + L   +D DGLP++G  +  G+PY    + 
Sbjct: 773  VYKSEFIDLSEKIKQGDDSLVFGVKPGDPRVLQK-LDDDGLPFIGAQLKYGDPYYGYLNL 831

Query: 804  TTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKG 862
             T        K  E+  VD + V   ++ +   K   I  R  RNP IGDKF+SRHGQKG
Sbjct: 832  NTGENFVIYYKSKENCIVDNIKVCSNDTGSGKFKCICITMRVPRNPTIGDKFASRHGQKG 891

Query: 863  VCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPF 922
            + S+LWP  DMPFS  +GM PD++ NPH FPSRMTI ML+ES+A K  +LHG   DATPF
Sbjct: 892  ILSRLWPAEDMPFSE-SGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPF 950

Query: 923  ANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYY 982
              S           E  S ++  GEML+  G+N++G E LYSG+ G EL  +IFIG VYY
Sbjct: 951  TFS-----------EENSALEYFGEMLKAAGYNFYGTERLYSGISGIELEADIFIGVVYY 999

Query: 983  QRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLH 1042
            QRLRHMVSDKFQVR+TG  D++T QPI GR   GGIRFGEMERD+LLAHG ++LLHDRL 
Sbjct: 1000 QRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLF 1059

Query: 1043 TCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP---KKVTCHACQTSKGME 1099
             CSD  VA VC  CGS+L+     P           PP+ +    +K  C  C  S  ++
Sbjct: 1060 NCSDRSVAHVCVECGSLLSPLLEKP-----------PPSWSAMRNRKYNCTLCNRSDTID 1108

Query: 1100 TVAMPYVFRYLAAELAAMNIKITLQL 1125
            TV++PYVFRY  AELAAMNIK+ L +
Sbjct: 1109 TVSVPYVFRYFVAELAAMNIKVKLDV 1134


>gi|402891934|ref|XP_003909183.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 2
            [Papio anubis]
          Length = 1079

 Score =  892 bits (2304), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/1123 (43%), Positives = 666/1123 (59%), Gaps = 88/1123 (7%)

Query: 12   LRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNF 71
            L+EL R H+ESF+Y + EGL                 + AD+ +        ++++    
Sbjct: 35   LQELTRAHVESFNYAVHEGLGL--------------AVQADINWAVNGISKGIIKQ--CL 78

Query: 72   GQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMV 131
            G  P+M+K++ C+L     Q L+   EEA EMGGYFI+NG+E+V R +I+P++N+P++M+
Sbjct: 79   GYVPIMVKSKLCNLHSLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMI 138

Query: 132  RSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLK 191
            R  ++ R  GYT   V + CVR++ S+V + L+YL NG+V L F  + + + LP+G  LK
Sbjct: 139  RPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALK 198

Query: 192  ALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHI 251
            ALV  +D +IF  L         KE  +     VS+ ++I++ E      +T+ Q L ++
Sbjct: 199  ALVSFSDYQIFQELI------KGKEDDSFLRNSVSQMLRIVMEE----GCSTQKQVLNYL 248

Query: 252  GEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSD 311
            GE F+  ++          AE +    I +HL  + +KF +L  M +KLF+L     + D
Sbjct: 249  GECFRVKLNVPDWYPNEQAAEFLFNQCICIHLKSSTEKFYMLCLMTRKLFALAKGECMED 308

Query: 312  NPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVME 371
            NPDSL NQE+L PG L  ++LKEKLE WL   K     + +      +  NL  I  +  
Sbjct: 309  NPDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTNVSMNTDNLMRIFTM-- 366

Query: 372  KNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFA 431
                  +    E +  TG L ++TGL L Q +G  V A++LNF+R++S FR VHRGA FA
Sbjct: 367  ---GIDLTKPFEYLFATGNLRSKTGLGLLQNSGLCVVADKLNFIRYLSHFRCVHRGADFA 423

Query: 432  GLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS 491
             +RTT+VR+LLPESWGFLCPVHTPDGEPCGL+NH+T+ C V + +              S
Sbjct: 424  KMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQF----------VYTAS 473

Query: 492  ILRVLIGVGMIPSLPKLVKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVS 547
            I  +L  +G+ P     V   P    S    VLLDG +VG +       +   LR  KV 
Sbjct: 474  IPALLCNLGVTP-----VDGAPHRPYSECYPVLLDGVMVGWVDKELAPGIADSLRHFKVL 528

Query: 548  AASVIPDDLEVGYVPLS-LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQ 606
                IP  +EV  +P++     YPGL+LFT+P + VRPV+N+ L  EE     LIG  EQ
Sbjct: 529  REKRIPPWMEVVLIPMTGKPSLYPGLFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQ 583

Query: 607  VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQT 666
            +FM +   +        A   TH+E+ P  +LSV+AN  P+SDHNQSPRNMYQCQM KQT
Sbjct: 584  IFMNVAIFED----EVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQT 639

Query: 667  MGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMED 726
            MGF +   + R+D KLY LQTPQ+P+VR + Y  Y +D YP GTNAIVAV++YTGYDMED
Sbjct: 640  MGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMED 699

Query: 727  AMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPY 786
            AMI+NK+S +RG  HG +Y++E IDLS+   + D       +  D + L   +D DGLP+
Sbjct: 700  AMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQK-LDDDGLPF 758

Query: 787  VGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHT 845
            +G  +  G+PY S  +  T        K  E+  VD + V   ++ +   K   I  R  
Sbjct: 759  IGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVP 818

Query: 846  RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
            RNP IGDKF+SRHGQKG+ S+LWP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+
Sbjct: 819  RNPTIGDKFASRHGQKGILSRLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESM 877

Query: 906  AAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSG 965
            A K  +LHG   DATPF  S           E  S ++  GEML+  G+N++G E LYSG
Sbjct: 878  AGKSAALHGLCHDATPFIFS-----------EENSALEYFGEMLKAAGYNFYGTERLYSG 926

Query: 966  VYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMER 1025
            + G EL  +IFIG VYYQRLRHMVSDKFQVR+TG  D++T QPI GR   GGIRFGEMER
Sbjct: 927  ISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMER 986

Query: 1026 DSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP- 1084
            D+LLAHG ++LLHDRL  CSD  VA VC  CGS+L+     P           PP+ +  
Sbjct: 987  DALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKP-----------PPSWSAM 1035

Query: 1085 --KKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
              +K  C  C  S  ++TV++PYVFRY  AELAAMNIK+ L +
Sbjct: 1036 RNRKYNCTLCNRSDTIDTVSVPYVFRYFVAELAAMNIKVKLDV 1078


>gi|221044264|dbj|BAH13809.1| unnamed protein product [Homo sapiens]
          Length = 1173

 Score =  891 bits (2302), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/1161 (42%), Positives = 675/1161 (58%), Gaps = 108/1161 (9%)

Query: 12   LRELVRHHIESFDYMLDEGLS--------------------EMFD--------------- 36
            L+EL R H+ESF+Y + EGL                      + D               
Sbjct: 73   LQELTRAHVESFNYAVHEGLGLAVQAIPPFEFAFKDERISFTILDAVISPPTVPKGTICK 132

Query: 37   -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
                    CR  + +Y GKL AD+ +        ++++    G  P+M+K++ C+L+   
Sbjct: 133  EANVYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQFL--GYVPIMVKSKLCNLRNLP 190

Query: 90   SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
             Q L+   EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R  ++ R  GYT   V +
Sbjct: 191  PQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSM 250

Query: 150  RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
             CVR++ S+V + L+YL NG+V L F  + + + LP+G  LKALV  +D +IF  L    
Sbjct: 251  HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 307

Query: 210  DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
                 KE  +     VS+ ++I++ E      +T+ Q L ++GE F+  ++         
Sbjct: 308  ---KGKEDDSFLRNSVSQMLRIVMEE----GCSTQKQVLNYLGECFRVKLNVPDWYPNEQ 360

Query: 270  VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
             AE +    I +HL  N +KF +L  M +KLF+L     + DNPDSL NQE+L PG L  
Sbjct: 361  AAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFL 420

Query: 330  IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
            ++LKEKLE WL   K     + +      +  NL  I  +        +    E +  TG
Sbjct: 421  MFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMRIFTM-----GIDLTKPFEYLFATG 475

Query: 390  RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
             L ++TGL L Q +G  V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGFL
Sbjct: 476  NLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFL 535

Query: 450  CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
            CPVHTPDGEPCGL+NH+T+ C V + +    +I          L   +GV  I   P   
Sbjct: 536  CPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASI--------PALLCNLGVTPIDGAPHRS 587

Query: 510  KSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGA- 568
             S       VLLDG +VG +       +   LR  KV     IP  +EV  +P++   + 
Sbjct: 588  YS---ECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEVVLIPMTGKPSL 644

Query: 569  YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPAT 628
            YPGL+LFT+P + VRPV+N++L  EE     LIG  EQ+FM +   +        A   T
Sbjct: 645  YPGLFLFTTPCRLVRPVQNLALGKEE-----LIGTMEQIFMNVAIFED----EVFAGVTT 695

Query: 629  HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTP 688
            H+E+ P  +LSV+AN  P+SDHNQSPRNMYQCQM KQTMGF +   + R+D KLY LQTP
Sbjct: 696  HQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTP 755

Query: 689  QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
            Q+P+VR + Y  Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG  HG +Y++E
Sbjct: 756  QSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSE 815

Query: 749  TIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSW 808
             IDLS+   + D       +  D + L   +D DGLP++G  +  G+PY S  +  T   
Sbjct: 816  FIDLSEKIKQGDSSLVFGIKPGDPRVLQK-LDDDGLPFIGAKLQYGDPYYSYLNLNTGES 874

Query: 809  RTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQL 867
                 K  E+  VD + V   ++ +   K   I  R  RNP IGDKF+SRHGQKG+ S+L
Sbjct: 875  FVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRL 934

Query: 868  WPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVK 927
            WP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+A K  +LHG   DATPF  S  
Sbjct: 935  WPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFS-- 991

Query: 928  KTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRH 987
                     E  S ++  GEML+  G+N++G E LYSG+ G EL  +IFIG VYYQRLRH
Sbjct: 992  ---------EENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRH 1042

Query: 988  MVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDY 1047
            MVSDKFQVR+TG  D++T QPI GR   GGIRFG MERD+LLAHG ++LLHDRL  CSD 
Sbjct: 1043 MVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGGMERDALLAHGTSFLLHDRLFNCSDR 1102

Query: 1048 HVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP---KKVTCHACQTSKGMETVAMP 1104
             VA VC  CGS+L+     P           PP+ +    +K  C  C  S  ++TV++P
Sbjct: 1103 SVAHVCVKCGSLLSPLLEKP-----------PPSWSAMRNRKYNCTLCSRSDTIDTVSVP 1151

Query: 1105 YVFRYLAAELAAMNIKITLQL 1125
            YVFRY  AELAAMNIK+ L +
Sbjct: 1152 YVFRYFVAELAAMNIKVKLDV 1172


>gi|260946741|ref|XP_002617668.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
 gi|238849522|gb|EEQ38986.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
          Length = 1232

 Score =  890 bits (2301), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/1117 (43%), Positives = 674/1117 (60%), Gaps = 95/1117 (8%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR+   +Y GKL+  V +   D     V E  + GQ P+MLK+ RCHL+     +LV+ K
Sbjct: 171  CRERMSTYRGKLLMKVVWSVNDGEE--VSEVRDGGQVPIMLKSNRCHLEKLSPDELVAQK 228

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EE+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R   YT   V IRCVR DQ+
Sbjct: 229  EESDELGGYFIVNGIEKLVRMLIVQRRNHPMALIRPSFGNRGASYTKFGVQIRCVRPDQT 288

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            S T  L+YL +G+V   F  +  EYL+PV +VLKALV+TND EIF+ +            
Sbjct: 289  SQTNVLHYLKDGNVTFRFSWRKNEYLVPVVMVLKALVETNDREIFDGIVAA--------- 339

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
                +  +++R++++L   +  +L ++   L ++G+ F+         S   V   V++ 
Sbjct: 340  -DTSNSFLTDRLELLLRTYKQYNLHSQKSTLAYLGDKFRVAFGATPDVSDIDVGREVLKR 398

Query: 278  YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
             + VHL DN DKF LL+F ++KL++LV      DNPD+ Q+QE+LL G L  + +KEK+E
Sbjct: 399  IVLVHLPDNADKFRLLLFSIRKLYTLVAGDCAPDNPDATQHQEVLLGGFLYGMIIKEKIE 458

Query: 338  DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
            ++L+  K  I  +I   G + +F +   + +V  +  ++ IG  ++  L TG L +Q+GL
Sbjct: 459  EYLQNIKMQISSDI-GRGVRVNFNDRKYMSRVFMRT-NENIGQKLQYFLSTGNLVSQSGL 516

Query: 398  DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDG 457
            DLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPVHTPDG
Sbjct: 517  DLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAELKTTTVRKLLPESWGFLCPVHTPDG 576

Query: 458  EPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVL 517
             PCGLLNH+   C++A+         D S +  ++ R  +GV      P    +  P + 
Sbjct: 577  SPCGLLNHLAHKCQIAT------KASDVSAVPAALAR--LGVS-----PAHTFAAGPGLC 623

Query: 518  SVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTS 577
             V LDG++VG     +   V   LR  KV     +P DLE+GYVP S  G YPGLYLF  
Sbjct: 624  CVHLDGKIVGWTSHEQGRIVADSLRLWKVQGLHNLPKDLEIGYVPPSSKGQYPGLYLFGG 683

Query: 578  PPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGM 637
              + +RP + + L  E+     ++GPFEQV+M I                TH E  PT +
Sbjct: 684  HSRMMRPAKYLPLDKED-----ILGPFEQVYMNIAVTPA----EIEENVHTHVEFAPTNI 734

Query: 638  LSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNT 697
            LS++ANLTP+SD NQSPRNMYQCQM KQTMG    AL  R+D KLY LQT QTPIV+ N 
Sbjct: 735  LSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALVHRSDNKLYRLQTGQTPIVKANL 794

Query: 698  YTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGN 757
            Y  YG+D +P G NA+VAV++YTGYDM+DAMI+NKS+ +RG  +G +Y+ E +DLS    
Sbjct: 795  YDDYGMDNFPNGMNAVVAVISYTGYDMDDAMIINKSADERGFGYGTVYKVEKVDLSLSRR 854

Query: 758  KVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKG 815
            + D   + F    D   ++    +D DGLP +G  +  G+P  + +D+T    +  +   
Sbjct: 855  RGDPITQHFGFGSDEWPETWKEKLDDDGLPLIGVKVEEGDPIVAYFDETLGKTKIKTYHS 914

Query: 816  SESVFVDYV---AVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDID 872
            SE  +++ V   A D  +S+   Q+  I++R TR P+IGDKFSSRHGQKGVCS+ WP +D
Sbjct: 915  SEPAYIEEVKLLADDTGDSEC--QQITIKYRVTRAPLIGDKFSSRHGQKGVCSRKWPTVD 972

Query: 873  MPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGD 932
            MP+S  +G++PD+IINPHAFPSRMTI M +ES+A K G+LHG   D+TP+  S       
Sbjct: 973  MPYSE-SGIQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPWKFS------- 1024

Query: 933  TGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDK 992
                E  +  D  GE L+  G+NYHG E +YSGV G EL  +I+IG VYYQRLRHMV+DK
Sbjct: 1025 ----EDDTPADFFGEQLKLAGYNYHGNEPMYSGVTGEELRADIYIGVVYYQRLRHMVNDK 1080

Query: 993  FQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADV 1052
            FQVRSTG ++ +T QP+KGRKR GGIR GEMERD+L+ HG AYLL DRL   SDY    +
Sbjct: 1081 FQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIGHGTAYLLQDRLLNSSDYAQTPI 1140

Query: 1053 CSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQ------TSKG--------- 1097
            C  CGS+L      P+      IG L        V C +C         KG         
Sbjct: 1141 CRSCGSLLNTQMSVPR------IGSL------ASVKCRSCADKLETYIKKGEYVNEADIW 1188

Query: 1098 -------------METVAMPYVFRYLAAELAAMNIKI 1121
                           TVA+P+V +YL +EL AM IK+
Sbjct: 1189 EDGSGTKFVGGADTTTVAIPFVLKYLDSELTAMGIKM 1225


>gi|321259894|ref|XP_003194667.1| DNA-directed RNA polymerase I polypeptide 2 [Cryptococcus gattii
            WM276]
 gi|317461139|gb|ADV22880.1| DNA-directed RNA polymerase I polypeptide 2, putative [Cryptococcus
            gattii WM276]
          Length = 1192

 Score =  890 bits (2301), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/1108 (43%), Positives = 674/1108 (60%), Gaps = 66/1108 (5%)

Query: 38   CRQAKISYTGKLMADVEFQYLD--AGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
             R+   +Y  KL  ++++   D         E    G  PVM+++ RC+LQG  + +L+ 
Sbjct: 130  ARERLATYRSKLTVNIKWTVTDEDGNRKEFEEIKECGLLPVMVRSIRCNLQGLPATELIK 189

Query: 96   LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
              EE+   GGYFI+NG E++ R +++P+++ P+++ R SF  R   YT     IRCVR D
Sbjct: 190  HSEESTSFGGYFIVNGNEKIIRYLVVPRRHNPINLYRPSFAKRGASYTPYGCQIRCVRPD 249

Query: 156  QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
            +++ T  ++YL NG   L F  +  EY++P+ ++LKALVD +D EIF  L          
Sbjct: 250  ETACTNTIHYLSNGGATLRFAWRKVEYMIPLMLILKALVDASDKEIFEGLI--------- 300

Query: 216  EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
             +G   +  +++RV+++L   +   L T  QCL ++GE F+ V++     S   V   ++
Sbjct: 301  -QGEYDNTFLTDRVELLLRGQKSWGLHTGAQCLDYLGEKFRVVLNVPDDWSNVQVGGYLL 359

Query: 276  RDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEK 335
            R  + VHL    DKF +L+FML+KL+S V   +  DNPDS Q+ E+LLPG L  + +KE+
Sbjct: 360  RKVVLVHLPAPRDKFRMLLFMLRKLYSQVSGATCPDNPDSPQHHEVLLPGFLYGMIIKER 419

Query: 336  LEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQT 395
             +D L   K  IQ ++ + GK   F +      V+ K  +  IG+ +   L TG L + T
Sbjct: 420  FDDCLNAVKSQIQLDLRD-GKARSFMDPKYFTSVLSKT-NWDIGSKLSYFLATGNLVSPT 477

Query: 396  GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTP 455
            GLDLQQ +G+T+ AE+LNF R++S FR +HRGA FA L+TT+VRKL+PESWGFLCPVHTP
Sbjct: 478  GLDLQQTSGFTIVAEKLNFYRYLSHFRCIHRGAFFAELKTTTVRKLMPESWGFLCPVHTP 537

Query: 456  DGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGV-GMIPSLPKLVKSGPP 514
            DG PCGLLNH++ TC++ +           S +  S +  L+   GM       +     
Sbjct: 538  DGSPCGLLNHLSHTCQIVT-----------SSLDVSHIPALLSAQGMTQVFASSIDGR-- 584

Query: 515  AVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYL 574
             ++ + LDG+V+G     + +++   LR+LK  A   +P DLE+GYVP++ GG YPGLYL
Sbjct: 585  RMVCIQLDGKVIGYASPMKAKQLANRLRKLKTEADPKVPLDLEIGYVPVTKGGQYPGLYL 644

Query: 575  FTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHP 634
            F+S  + +RPV  +     E+  ++ +G FEQV+M++               ++H E+ P
Sbjct: 645  FSSRSRMMRPVTYL-----ENGKLDHLGSFEQVYMDVAITKE----EIEKGVSSHLELDP 695

Query: 635  TGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVR 694
            T MLSV+ANLTP+SD NQSPRNMYQCQM KQ+MG    A+  R D K+Y LQ+ QTP+VR
Sbjct: 696  TSMLSVIANLTPFSDFNQSPRNMYQCQMGKQSMGTPSTAISKRTDNKMYRLQSGQTPVVR 755

Query: 695  TNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD 754
             + +  YG D +P GTNAIVAV++YTGYDMEDAMILNKS+ +RG  +G +Y+ +  DL  
Sbjct: 756  PDLHNHYGFDNFPNGTNAIVAVISYTGYDMEDAMILNKSAHERGFGYGTVYKADIFDLKG 815

Query: 755  --DGNKVDRGQKLFRRNKDAKSLH---SVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWR 809
                ++  +    F   +D K  H   ++I  DGLP +G  +  G+P C+  D TT   +
Sbjct: 816  VPGASRSAKPTLHFGLGRDVKEDHDARNIISQDGLPIIGTKVKTGDPLCAYIDDTTGRTK 875

Query: 810  TNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLW 868
             +  KG E+ F+D V V   ++ +   QK +I+ R  R+P+IGDKFSSRHGQKGVCSQ +
Sbjct: 876  FHKYKGDETAFIDEVRVLGSDAGDAELQKIHIKLRIPRSPVIGDKFSSRHGQKGVCSQKF 935

Query: 869  PDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKK 928
            P IDMPFS  +GM+PD+IINPHAFPSRMTI M +ES+A K G+LHG   DATPF  S K 
Sbjct: 936  PAIDMPFS-ESGMQPDVIINPHAFPSRMTIGMFVESMAGKAGALHGVAQDATPFKFSDKD 994

Query: 929  TNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHM 988
                         VD  GE LR  G+NY+G E +YSG+ G E   +I++G VYYQRLRHM
Sbjct: 995  RP-----------VDYFGEQLRAAGYNYYGNEPMYSGITGEEFHADIYLGLVYYQRLRHM 1043

Query: 989  VSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYH 1048
            V+DKFQVR+TG +D +TRQP+KGRKR GGIRFGEMERD+L+AHG ++LL DRL  CSDY 
Sbjct: 1044 VNDKFQVRTTGPVDPLTRQPVKGRKRAGGIRFGEMERDALIAHGTSFLLQDRLMNCSDYS 1103

Query: 1049 VADVCSLCGSVLTATFI-----HPQKRAIREIGGLPPARAPKK------VTCHACQTSKG 1097
             A VC  CGS+++  F         +   R   G  P    +       V     +    
Sbjct: 1104 TAWVCRNCGSLVSLGFEEVGGGQGMQEYCRICDGHEPEHGEESKENGVGVVMRGGEKKGR 1163

Query: 1098 METVAMPYVFRYLAAELAAMNIKITLQL 1125
            M+ V +PYVFRYL AE+A M I++ + +
Sbjct: 1164 MDVVPVPYVFRYLCAEMACMGIRLNVTV 1191


>gi|149727186|ref|XP_001495511.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 1
            [Equus caballus]
          Length = 1135

 Score =  890 bits (2301), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/1166 (42%), Positives = 676/1166 (57%), Gaps = 118/1166 (10%)

Query: 12   LRELVRHHIESFDYMLDEGLSEMFD----------------------------------- 36
            L+EL R H+ESF+Y + EGLS                                       
Sbjct: 35   LQELTRAHVESFNYAVREGLSHAVQAIPPFEFAFKDERISLTIVDAVISPPTVPKGSICK 94

Query: 37   -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
                    CR  + +Y GKL AD+ +        ++++    G  P+M+K++ C+L    
Sbjct: 95   DLSIYPAECRGRRSTYRGKLTADISWSVNGIPKGIIKQFL--GYVPIMVKSKLCNLYNLP 152

Query: 90   SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
             + L+   EEA EMGGYFI+NG+E+V R +I+P++N+P+++ R  ++ R  GYT   V +
Sbjct: 153  PRALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIALTRPKWKTRGPGYTQYGVSM 212

Query: 150  RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
             CVR++ S+V + L+YL NG+V L F  + + + LP+G  LKALV  +D +IF  L    
Sbjct: 213  HCVREEHSAVNMNLHYLENGTVMLNFVYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269

Query: 210  DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
                 KE  +     VS+ ++I+  E      +T+ Q L ++GE F+  ++         
Sbjct: 270  ---KGKEDDSFFRNSVSQMLRIVTEE----GCSTQKQVLNYLGERFRVKLNLPDWYPDAQ 322

Query: 270  VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
             AE +    I +HL  N +KF +L  M +KLF+L     + +NPDSL NQE+L PG L  
Sbjct: 323  AAEFLFNQCICIHLKSNTEKFYVLCLMTRKLFALAKGECMEENPDSLVNQEVLTPGQLFL 382

Query: 330  IYLKEKLEDWLRKGKKLIQDEIENNGKKFDF-FNLANIKKVMEKNPSKQIGTSIETMLKT 388
            ++LKEK+E WL      I+  ++   +K D   N  N+ K+   N    +    E +L T
Sbjct: 383  MFLKEKMEAWLVS----IKIALDKKAQKTDVSINTDNLMKIF--NLGTDLTKPFEYLLAT 436

Query: 389  GRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGF 448
            G L ++TGL   Q +G  V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGF
Sbjct: 437  GNLRSKTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGF 496

Query: 449  LCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKL 508
            LCPVHTPDGEPCGL+NH+T+ C V + +              S+  +L  +G+ P     
Sbjct: 497  LCPVHTPDGEPCGLMNHLTAICEVVTQF----------AYTASVPALLCSLGVTP----- 541

Query: 509  VKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS 564
            V   P    S    VLLDG +VG +       +   LR  KV     IP  +EV  +P++
Sbjct: 542  VDGAPHRPYSECYPVLLDGVMVGWVDKELAPSIADSLRHFKVLREKRIPPWMEVALIPMT 601

Query: 565  -LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRN 623
                 YPGL+LFT+P + VRPV+N+ L  EE     LIG  EQ+FM I   +        
Sbjct: 602  GKPSLYPGLFLFTTPCRLVRPVQNLELGREE-----LIGTMEQIFMNIAIFED----EVF 652

Query: 624  AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
            A   TH+E+ P  +LSV+AN  P+SDHNQSPRNMYQCQM KQTMGF +   + R+D KLY
Sbjct: 653  AGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYRDRSDNKLY 712

Query: 684  HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
             LQTPQ+P+VR   Y  Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG  HG 
Sbjct: 713  RLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGS 772

Query: 744  IYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDK 803
            +Y++E IDLS+   + D       +  D + +   +D DGLP++G  +  G+PY S  + 
Sbjct: 773  VYKSEFIDLSEKIKQGDDSLVFGVKPGDPRIVQK-LDDDGLPFIGAQLQYGDPYYSYLNL 831

Query: 804  TTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKG 862
             T        K  E+  VD + V   ++ +   K   I  R  RNP IGDKF+SRHGQKG
Sbjct: 832  NTGESFVMYYKSKENCIVDNIKVCSNDTGSGKFKCICITMRVPRNPTIGDKFASRHGQKG 891

Query: 863  VCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPF 922
            + S+LWP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+A K  +LHG   DATPF
Sbjct: 892  ILSRLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPF 950

Query: 923  ANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYY 982
              S           E  S ++  GEML+  G+N++G E LYSG+ G EL  +IFIG VYY
Sbjct: 951  IFS-----------EENSALEYFGEMLKAAGYNFYGTERLYSGISGVELEADIFIGVVYY 999

Query: 983  QRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLH 1042
            QRLRHMVSDKFQVR+TG  D++T QPI GR   GGIRFGEMERD+LLAHG ++LLHDRL 
Sbjct: 1000 QRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLF 1059

Query: 1043 TCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP---KKVTCHACQTSKGME 1099
             CSD  VA VC  CGS+L+     P           PP+ +    +K  C  C  S  ++
Sbjct: 1060 NCSDRSVAHVCVKCGSLLSPLLEKP-----------PPSWSAMRNRKYNCTLCNRSDTID 1108

Query: 1100 TVAMPYVFRYLAAELAAMNIKITLQL 1125
            TV++PYVFRY  AELAAMNIK+ L +
Sbjct: 1109 TVSVPYVFRYFVAELAAMNIKVKLDV 1134


>gi|114579608|ref|XP_001145162.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 6 [Pan
            troglodytes]
          Length = 1070

 Score =  890 bits (2300), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/1094 (44%), Positives = 655/1094 (59%), Gaps = 66/1094 (6%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
             CR  + +Y GKL AD+ +        ++++    G  P+M+K++ C+L+    Q L+  
Sbjct: 37   ECRGRRSTYRGKLTADINWAVNGISKGIIKQFL--GYVPIMVKSKLCNLRNLPPQALIEH 94

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
             EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R  ++ R  GYT   V + CVR++ 
Sbjct: 95   HEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSMHCVREEH 154

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
            S+V + L+YL NG+V L F  + + + LP+G  LKALV  +D +IF  L         KE
Sbjct: 155  SAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI------KGKE 208

Query: 217  KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
              +     VS+ ++I++ E       T+ Q L ++GE F+  ++          AE +  
Sbjct: 209  DDSFLRNSVSQMLRIVMEE----GCLTQKQVLNYLGECFRVKLNVPDWYPNEQAAEFLFN 264

Query: 277  DYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
              I +HL  N +KF +L  M +KLF+L     + DNPDSL NQE+L PG L  ++LKEKL
Sbjct: 265  QCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKEKL 324

Query: 337  EDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
            E WL   K     + +      +  NL  I  +        +    E +  TG L ++TG
Sbjct: 325  EGWLVSIKIAFDKKAQKTSVSMNTDNLMKIFTM-----GIDLTKPFEYLFATGNLRSKTG 379

Query: 397  LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
            L L Q +G  V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGFLCPVHTPD
Sbjct: 380  LGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFLCPVHTPD 439

Query: 457  GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAV 516
            GEPCGL+NH+T+ C V + +    +I          L   +GV  I   P    S     
Sbjct: 440  GEPCGLMNHLTAVCEVVTQFVYTASI--------PALLCNLGVTPIDGAPHRSYS---EC 488

Query: 517  LSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS-LGGAYPGLYLF 575
              VLLDG +VG +       +   LR  KV     IP  +EV  +P++     YPGL+LF
Sbjct: 489  YPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEVVLIPMTGKPSLYPGLFLF 548

Query: 576  TSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPT 635
            T+P + VRPV+N+ L  EE     LIG  EQ+FM +   +        A   TH+E+ P 
Sbjct: 549  TTPCRLVRPVQNLELGKEE-----LIGTMEQIFMNVAIFED----EVFAGVTTHQELFPH 599

Query: 636  GMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRT 695
             +LSV+AN  P+SDHNQSPRNMYQCQM KQTMGF +   + R+D KLY LQTPQ+P+VR 
Sbjct: 600  SLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPILTYQDRSDNKLYRLQTPQSPLVRP 659

Query: 696  NTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD 755
            + Y  Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG  HG +Y++E IDLS+ 
Sbjct: 660  SMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEK 719

Query: 756  GNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKG 815
              + D       +  D + L   +D DGLP++G  +  G+PY S  +  T        K 
Sbjct: 720  IKQGDSSLVFGIKPGDPRVLQK-LDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKS 778

Query: 816  SESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMP 874
             E+  VD + V   ++ +   K   I  R  RNP IGDKF+SRHGQKG+ S+LWP  DMP
Sbjct: 779  KENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMP 838

Query: 875  FSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTG 934
            F+  +GM PD++ NPH FPSRMTI ML+ES+A K  +LHG   DATPF  S         
Sbjct: 839  FTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFS--------- 888

Query: 935  TDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQ 994
              E  S ++  GEML+  G+N++G E LYSG+ G EL  +IFIG VYYQRLRHMVSDKFQ
Sbjct: 889  --EENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQ 946

Query: 995  VRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCS 1054
            VR+TG  D++T QPI GR   GGIRFGEMERD+LLAHG ++LLHDRL  CSD  VA VC 
Sbjct: 947  VRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCV 1006

Query: 1055 LCGSVLTATFIHPQKRAIREIGGLPPARAP---KKVTCHACQTSKGMETVAMPYVFRYLA 1111
             CGS+L+     P           PP+ +    +K  C  C  S  ++TV++PYVFRY  
Sbjct: 1007 KCGSLLSPLLEKP-----------PPSWSAMRNRKYNCTLCNRSDTIDTVSVPYVFRYFV 1055

Query: 1112 AELAAMNIKITLQL 1125
            AELAAMNIK+ L +
Sbjct: 1056 AELAAMNIKVKLDV 1069


>gi|426336847|ref|XP_004031666.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 3
            [Gorilla gorilla gorilla]
          Length = 1070

 Score =  890 bits (2300), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/1094 (44%), Positives = 656/1094 (59%), Gaps = 66/1094 (6%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
             CR  + +Y GKL AD+ +        ++++    G  P+M+K++ C+L+    Q L+  
Sbjct: 37   ECRGRRSTYRGKLTADINWAVNGISKGIIKQFL--GYVPIMVKSKLCNLRNLPPQALIEH 94

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
             EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R  ++ R  GYT   V + CVR++ 
Sbjct: 95   HEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSMHCVREEH 154

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
            S+V + L+YL NG+V L F  + + + LP+G  LKALV  +D +IF  L         KE
Sbjct: 155  SAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI------KGKE 208

Query: 217  KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
              +     VS+ ++I++ E      +T+ Q L ++GE F+  ++          AE +  
Sbjct: 209  DDSFLRNSVSQMLRIVMEE----GCSTQKQVLNYLGECFRVKLNVPDWYPNEQAAEFLFN 264

Query: 277  DYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
              I +HL  N +KF +L  M +KLF+L     + DNPDSL NQE+L PG L  ++LKEKL
Sbjct: 265  QCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKEKL 324

Query: 337  EDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
            E WL   K     + +      +  NL  I  +        +    E +  TG L ++TG
Sbjct: 325  EGWLVSIKIAFDKKAQKTNVSMNTDNLMRIFAM-----GIDLTKPFEYLFATGNLRSKTG 379

Query: 397  LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
            L L Q +G  V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGFLCPVHTPD
Sbjct: 380  LGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFLCPVHTPD 439

Query: 457  GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAV 516
            GEPCGL+NH+T+ C V + +    +I          L   +GV  I   P    S     
Sbjct: 440  GEPCGLMNHLTAVCEVVTQFVYTASI--------PALLCNLGVTPIDGAPHRSYS---EC 488

Query: 517  LSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS-LGGAYPGLYLF 575
              VLLDG +VG +       +   LR  KV     IP  +EV  +P++     YPGL+LF
Sbjct: 489  YPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEVVLIPMTGKPSLYPGLFLF 548

Query: 576  TSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPT 635
            T+P + VRPV+N+ L  EE     LIG  EQ+FM +   +        A   TH+E+ P 
Sbjct: 549  TTPCRLVRPVQNLELGKEE-----LIGTMEQIFMNVAIFED----EVFAGVTTHQELFPH 599

Query: 636  GMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRT 695
             +LSV+AN  P+SDHNQSPRNMYQCQM KQTMGF +   + R+D KLY LQTPQ+P+VR 
Sbjct: 600  SLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRP 659

Query: 696  NTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD 755
            + Y  Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG  HG +Y++E IDLS+ 
Sbjct: 660  SMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEK 719

Query: 756  GNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKG 815
              + D       +  D + L   +D DGLP++G  +  G+PY S  +  T        K 
Sbjct: 720  IKQGDTSLVFGIKPGDPRVLQK-LDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKS 778

Query: 816  SESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMP 874
             E+  VD + V   ++ +   K   I  R  RNP IGDKF+SRHGQKG+ S+LWP  DMP
Sbjct: 779  KENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMP 838

Query: 875  FSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTG 934
            F+  +GM PD++ NPH FPSRMTI ML+ES+A K  +LHG   DATPF  S         
Sbjct: 839  FTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFS--------- 888

Query: 935  TDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQ 994
              E  S ++  GEML+  G+N++G E LYSG+ G EL  +IFIG VYYQRLRHMVSDKFQ
Sbjct: 889  --EENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQ 946

Query: 995  VRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCS 1054
            VR+TG  D++T QPI GR   GGIRFGEMERD+LLAHG ++LLHDRL  CSD  VA VC 
Sbjct: 947  VRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCV 1006

Query: 1055 LCGSVLTATFIHPQKRAIREIGGLPPARAP---KKVTCHACQTSKGMETVAMPYVFRYLA 1111
             CGS+L+     P           PP+ +    +K  C  C  S  ++TV++PYVFRY  
Sbjct: 1007 KCGSLLSPLLEKP-----------PPSWSAMRNRKYNCTLCNRSDTIDTVSVPYVFRYFV 1055

Query: 1112 AELAAMNIKITLQL 1125
            AELAAMNIK+ L +
Sbjct: 1056 AELAAMNIKVKLDV 1069


>gi|386780981|ref|NP_001247552.1| DNA-directed RNA polymerase I subunit RPA2 [Macaca mulatta]
 gi|355751581|gb|EHH55836.1| hypothetical protein EGM_05119 [Macaca fascicularis]
 gi|380817102|gb|AFE80425.1| DNA-directed RNA polymerase I subunit RPA2 isoform 1 [Macaca mulatta]
 gi|383422125|gb|AFH34276.1| DNA-directed RNA polymerase I subunit RPA2 isoform 1 [Macaca mulatta]
 gi|384949774|gb|AFI38492.1| DNA-directed RNA polymerase I subunit RPA2 isoform 1 [Macaca mulatta]
          Length = 1135

 Score =  890 bits (2300), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/1165 (42%), Positives = 674/1165 (57%), Gaps = 116/1165 (9%)

Query: 12   LRELVRHHIESFDYMLDEGLS--------------------EMFD--------------- 36
            L+EL R H+ESF+Y + EGL                      + D               
Sbjct: 35   LQELTRAHVESFNYAVHEGLGLAVQAIPPFEFAFKDERISFTILDAVISPPTVPKGTICK 94

Query: 37   -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
                    CR  + +Y GKL AD+ +        ++++    G  P+M+K++ C+L    
Sbjct: 95   EVSVYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQFL--GYVPIMVKSKLCNLHSLP 152

Query: 90   SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
             Q L+   EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R  ++ R  GYT   + +
Sbjct: 153  PQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGISM 212

Query: 150  RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
             CVR++ S+V + L+YL NG+V L F  + + + LP+G  LKALV  +D +IF  L    
Sbjct: 213  HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269

Query: 210  DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
                 KE  +     VS+ ++I++ E      +T+ Q L ++G  F+  ++         
Sbjct: 270  ---KGKEDDSFLRNSVSQMLRIVMEE----GCSTQKQVLNYLGGCFRVKLNVPDWYPNEQ 322

Query: 270  VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
             AE +    I +HL  N +KF +L  M +KLF+L     + DNPDSL NQE+L PG L  
Sbjct: 323  AAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFL 382

Query: 330  IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
            ++LKEKLE WL   K     + +      +  NL  I  +        +    E +  TG
Sbjct: 383  MFLKEKLEGWLVSIKIAFDKKAQKTNVSMNTDNLMRIFTM-----GIDLTKPFEYLFATG 437

Query: 390  RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
             L ++TGL L Q +G  V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGFL
Sbjct: 438  NLRSKTGLGLLQNSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFL 497

Query: 450  CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
            CPVHTPDGEPCGL+NH+T+ C V + +              SI  +L  +G+ P     V
Sbjct: 498  CPVHTPDGEPCGLMNHLTAVCEVVTQF----------VYTASIPALLCNLGVTP-----V 542

Query: 510  KSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS- 564
               P    S    VLLDG +VG +       +   LR  KV     IP  +EV  +P++ 
Sbjct: 543  DGAPHRPYSECYPVLLDGVMVGWVDKELAPGIADSLRHFKVLREKRIPPWMEVVLIPMTG 602

Query: 565  LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNA 624
                YPGL+LFT+P + VRPV+N+ L  EE     LIG  EQ+FM +   +        A
Sbjct: 603  KPSLYPGLFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQIFMNVAIFED----EVFA 653

Query: 625  FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
               TH+E+ P  +LSV+AN  P+SDHNQSPRNMYQCQM KQTMGF +   + R+D KLY 
Sbjct: 654  GVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYR 713

Query: 685  LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI 744
            LQTPQ+P+VR + Y  Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG  HG +
Sbjct: 714  LQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSV 773

Query: 745  YQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT 804
            Y++E IDLS+   + D       +  D + L   +D DGLP++G  +  G+PY S  +  
Sbjct: 774  YKSEFIDLSEKIKQGDSSLVFGIKPGDPRILQK-LDDDGLPFIGAKLQYGDPYYSYLNLN 832

Query: 805  TNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGV 863
            T        K  E+  VD + V   ++ +   K   I  R  RNP IGDKF+SRHGQKG+
Sbjct: 833  TGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGI 892

Query: 864  CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFA 923
             S+LWP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+A K  +LHG   DATPF 
Sbjct: 893  LSRLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFI 951

Query: 924  NSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQ 983
             S           E  S ++  GEML+  G+N++G E LYSG+ G EL  +IFIG VYYQ
Sbjct: 952  FS-----------EENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQ 1000

Query: 984  RLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHT 1043
            RLRHMVSDKFQVR+TG  D++T QPI GR   GGIRFGEMERD+LLAHG ++LLHDRL  
Sbjct: 1001 RLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFN 1060

Query: 1044 CSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP---KKVTCHACQTSKGMET 1100
            CSD  VA VC  CGS+L+     P           PP+ +    +K  C  C  S  ++T
Sbjct: 1061 CSDRSVAHVCVKCGSLLSPLLEKP-----------PPSWSAMRNRKYNCTLCNRSDTIDT 1109

Query: 1101 VAMPYVFRYLAAELAAMNIKITLQL 1125
            V++PYVFRY  AELAAMNIK+ L +
Sbjct: 1110 VSVPYVFRYFVAELAAMNIKVKLDV 1134


>gi|354471216|ref|XP_003497839.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 1
            [Cricetulus griseus]
          Length = 1135

 Score =  890 bits (2299), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1166 (42%), Positives = 675/1166 (57%), Gaps = 118/1166 (10%)

Query: 12   LRELVRHHIESFDYMLDEGLSEMFD----------------------------------- 36
            L++L R H++SF+Y + EGLS                                       
Sbjct: 35   LQDLTRAHVDSFNYAVLEGLSHAVQAIPPFEFAFKDERISLTIVDAVISPPSVPKGTICK 94

Query: 37   -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
                    CR  + +Y G+L AD+ +        V+++    G  P+M+K++ C+L    
Sbjct: 95   ELNVYPAECRGRRSTYRGRLTADISWAVNGVPKGVIKQFL--GYVPIMVKSKLCNLYNLP 152

Query: 90   SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
             Q L+   EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R  ++ R  GYT   V +
Sbjct: 153  PQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKSRGLGYTHFGVSM 212

Query: 150  RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
             CVR++ S+V + L+Y+ NG+V L F  + + + LP+G VLKALV  +D +IF  L    
Sbjct: 213  HCVREEHSAVNMNLHYVENGTVMLNFIYRKELFFLPLGFVLKALVSFSDYQIFQELI--- 269

Query: 210  DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
                   KG          V  +L  V +   +T+ Q L ++GE F+  +   +      
Sbjct: 270  -------KGKEEDSFFKNSVSQMLRTVMEEGCSTQKQVLNYLGERFRVKLSLPEWYPNEE 322

Query: 270  VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
             A+ +  + I +HL  + +KF LL  M +KLF+L     + DNPDSL NQE+L PG L  
Sbjct: 323  AAKFLFNECICIHLKSDTEKFYLLCLMTRKLFALARGECMEDNPDSLVNQEVLTPGQLFL 382

Query: 330  IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
            ++LKEK+E+WL   K  +    +      +  NL  I  +       ++    E +L TG
Sbjct: 383  MFLKEKMENWLASIKIALDKRAQKTNVSINNENLLKIFSM-----GTELTRPFEYLLATG 437

Query: 390  RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
             L ++TGL   Q +G  V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGFL
Sbjct: 438  NLRSKTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFL 497

Query: 450  CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
            CPVHTPDG PCGLLNH+T+ C V + +              S+  +L G+G+ P     V
Sbjct: 498  CPVHTPDGAPCGLLNHLTAICEVVTKF----------VYTASVPALLCGLGVTP-----V 542

Query: 510  KSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
             + P    S    VLLDG +VG +       V   LRR KV     IP  +EV  VP++ 
Sbjct: 543  DATPCRPYSDCYPVLLDGVMVGWVDKELAPDVADTLRRFKVLREKRIPPWMEVALVPMTG 602

Query: 566  GGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRN 623
              + YPGL+LFT+P + VRPV+N+ L  EE     LIG  EQ+FM +    D    G   
Sbjct: 603  KPSLYPGLFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQLFMNVAIFEDEVFSGI-- 655

Query: 624  AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
               +TH+E+ P  +LSV+AN  P+SDHNQSPRNMYQCQM KQTMGF +   + R+D KLY
Sbjct: 656  ---STHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTFQDRSDNKLY 712

Query: 684  HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
             LQTPQ+P+VR   Y  Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG  HG 
Sbjct: 713  RLQTPQSPLVRPCMYDYYSMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGS 772

Query: 744  IYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDK 803
            +Y++E IDLS+   + +       +  D + +   +D DGLP++G  +  G+PY S  + 
Sbjct: 773  VYKSEFIDLSEKFKQGNDNLVFGIKPGDPRVMQK-LDDDGLPFIGAKLQFGDPYYSYLNL 831

Query: 804  TTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKG 862
             T        K  E+  VD + V   ++ +   K   I  R  RNP IGDKF+SRHGQKG
Sbjct: 832  NTGEGFVVYYKSKENCIVDNIKVCSNDTGSGKFKCICITIRVPRNPTIGDKFASRHGQKG 891

Query: 863  VCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPF 922
            + S+LWP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+A K  +LHG   DATPF
Sbjct: 892  ILSRLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPF 950

Query: 923  ANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYY 982
              S           E  S +   GEML+  G+N++G E LYSG+ G EL  +IFIG VYY
Sbjct: 951  IFS-----------EESSALGYFGEMLKAAGYNFYGTERLYSGISGMELEADIFIGVVYY 999

Query: 983  QRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLH 1042
            QRLRHMVSDKFQVR+TG  D++T QPI GR   GGIRFGEMERD+LLAHG ++LLHDRL 
Sbjct: 1000 QRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLF 1059

Query: 1043 TCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP---KKVTCHACQTSKGME 1099
             CSD  VA VC  CGS+L+     P           PP+ +    +K  C  C  S  ++
Sbjct: 1060 NCSDRSVAHVCVKCGSLLSPLLEKP-----------PPSWSAMRNRKYNCTVCGRSDTID 1108

Query: 1100 TVAMPYVFRYLAAELAAMNIKITLQL 1125
            TV++PYVFRY  AELAAMNIK+ L +
Sbjct: 1109 TVSVPYVFRYFVAELAAMNIKVKLDV 1134


>gi|402226318|gb|EJU06378.1| DNA-directed RNA polymerase I polypeptide 2 [Dacryopinax sp. DJM-731
            SS1]
          Length = 1209

 Score =  890 bits (2299), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/1148 (43%), Positives = 683/1148 (59%), Gaps = 117/1148 (10%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
             R+   SY G++   + +  +D G      R + G  P+M+++ RC+L+G  S +LV+  
Sbjct: 118  ARERLTSYRGRMSIKLAWS-VDGGQEEDDTR-DCGLLPIMVRSDRCNLKGMSSAELVAHH 175

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EEA E GGYF++NG ER+ R +ILP++N+ MS++R S+ +R   YT  AV +RCVR DQ+
Sbjct: 176  EEAEEFGGYFLINGNERLIRYLILPRRNHVMSLIRPSYTNRGASYTQYAVTMRCVRPDQT 235

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            S+T  L+YL+NG+  L F  + +EY +P+ ++LK L+  +D E+F  +            
Sbjct: 236  SLTNSLHYLVNGTAMLRFSWRKQEYTIPIMLILKCLMGASDKEVFEGIVM---------- 285

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
            G   +  + +RV+++L   ++ SL T  QCL+++G  F+ V++         V   +I  
Sbjct: 286  GDYQNTFLLDRVELLLRSFKNYSLPTSQQCLEYLGHKFRVVLNLPDDWEDVHVGSWLINK 345

Query: 278  YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
             I VHL    +KF +L+FML+KL+SLV   S +DNPDS QNQEILLPG L  + +KE+LE
Sbjct: 346  VILVHLPAAREKFRMLLFMLRKLYSLVSGASCADNPDSPQNQEILLPGSLYAMAIKERLE 405

Query: 338  DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
            D L + + ++  + +  G   DF N   + ++ +K  +  +G  +   L TG L + TGL
Sbjct: 406  DALNQIRNMVTLD-QRQGVPIDFHNKKYLNRLFKK-INFDVGARMANFLATGNLISPTGL 463

Query: 398  DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDG 457
            DLQQ AG+TV AE+LN+ R+IS FR VHRGA FA L+TT+VRKLLPESWGF+CPVHTPDG
Sbjct: 464  DLQQAAGFTVVAEKLNWYRYISHFRCVHRGAFFAELKTTTVRKLLPESWGFVCPVHTPDG 523

Query: 458  EPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVL 517
             PCGLLNH++ +C + +   S  +I            +L  +GM  +    V       L
Sbjct: 524  APCGLLNHLSRSCLIVTSTPSVSHIP----------ALLSSLGMTEAFSTHVDGR--QNL 571

Query: 518  SVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTS 577
             V LDGRV+G    +   ++   LR  K  A   +P DLE+G VP S GG YPGL+LF+ 
Sbjct: 572  CVQLDGRVIGWASPTIAGQLAIALRLWKTEAKHNVPLDLEIGLVPESKGGQYPGLFLFSQ 631

Query: 578  PPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFP--ATHEEIHPT 635
              + +RPV+   LP++    I+ IG FEQV+M+I          +   P  +TH E+ PT
Sbjct: 632  KARMMRPVK--YLPNDR---IDHIGSFEQVYMDIAIEP------QEIIPNVSTHVELSPT 680

Query: 636  GMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRT 695
              LS++ANLTP+S+ NQSPRN+YQCQM KQ+MG    AL  R D KLY LQT Q+P+VR 
Sbjct: 681  NFLSILANLTPFSNFNQSPRNIYQCQMGKQSMGTPSTALSRRTDNKLYRLQTGQSPVVRP 740

Query: 696  NTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD 755
              +  YG+D +P GTNAIVAV++YTGYDMEDAMI+NKS+ +RG  HG IY+T  +DL++ 
Sbjct: 741  ELHNTYGMDHFPNGTNAIVAVISYTGYDMEDAMIINKSAHERGFGHGTIYKTHVLDLTEV 800

Query: 756  GNKVDR--------GQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNS 807
                 R        G     R  D +     +D DGLP+VG  +  G+P  +  D TT  
Sbjct: 801  RGSQKRSATPNIHFGIGTDIRPDDKR--REFVDWDGLPFVGTRLLEGDPMGAHIDDTTGR 858

Query: 808  WRTNSRKGSESVFVDYVAVDMKNSKNL-PQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQ 866
               +  KG E  +VD V +   ++ +   QK  +  R  R P+IGDKFSSRHGQKGVCSQ
Sbjct: 859  TVFDKYKGIEVAYVDTVRLLGGDAGDTEAQKMQVTLRIPRPPVIGDKFSSRHGQKGVCSQ 918

Query: 867  LWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSV 926
             WP IDMPFS  +GM+PD+IINPHAFPSRMTI M +ES+A K G+LHG   DATPF  S 
Sbjct: 919  KWPAIDMPFSE-SGMQPDVIINPHAFPSRMTIGMFVESMAGKAGALHGLAQDATPFKFS- 976

Query: 927  KKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLR 986
                      E  + VD  G+ L   G+NY+G E +YSG+ G E   +I+IG VYYQRLR
Sbjct: 977  ----------EENTAVDFFGKQLSAAGYNYYGHESMYSGITGQEFAADIYIGVVYYQRLR 1026

Query: 987  HMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSD 1046
            HMV DKFQVR+TG +D +TRQP+KGRKR GGIRFGEMERD+L+AHG ++LL DRL  CSD
Sbjct: 1027 HMVDDKFQVRTTGPVDPVTRQPVKGRKRAGGIRFGEMERDALIAHGTSFLLQDRLMNCSD 1086

Query: 1047 YHVADVCSLCGSVLT---------ATFIHPQKRAIREIGGLPPARAPKKVTCHAC----- 1092
            Y  A VC  CGS+++          + +  +  + R++ G      P    C  C     
Sbjct: 1087 YSTAWVCRTCGSLISLGYDDIALGESIMAGRGFSSRKVSG------PSGEYCRVCRGREE 1140

Query: 1093 -----------------------------------QTSKGMETVAMPYVFRYLAAELAAM 1117
                                               + S  M+ VA+PYVFRYL AELAAM
Sbjct: 1141 EKERRERAALDAPQAQAQAQARVDLTFALPNGNVLKKSGDMDVVAVPYVFRYLCAELAAM 1200

Query: 1118 NIKITLQL 1125
             I ++L++
Sbjct: 1201 GIAVSLEV 1208


>gi|397465560|ref|XP_003804559.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 3 [Pan
            paniscus]
          Length = 1070

 Score =  889 bits (2297), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/1094 (44%), Positives = 655/1094 (59%), Gaps = 66/1094 (6%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
             CR  + +Y GKL AD+ +        ++++    G  P+M+K++ C+L+    Q L+  
Sbjct: 37   ECRGRRSTYRGKLTADINWAVNGISKGIIKQFL--GYVPIMVKSKLCNLRNLPPQALIEH 94

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
             EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R  ++ R  GYT   V + CVR++ 
Sbjct: 95   HEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSMHCVREEH 154

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
            S+V + L+YL NG+V L F  + + + LP+G  LKALV  +D +IF  L         KE
Sbjct: 155  SAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI------KGKE 208

Query: 217  KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
              +     VS+ ++I++ E       T+ Q L ++GE F+  ++          AE +  
Sbjct: 209  DDSFLRNSVSQMLRIVMEE----GCLTQKQVLNYLGECFRVKLNVPDWYPNEQAAEFLFN 264

Query: 277  DYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
              I +HL  N +KF +L  M +KLF+L     + DNPDSL NQE+L PG L  ++LKEKL
Sbjct: 265  QCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKEKL 324

Query: 337  EDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
            E WL   K     + +      +  NL  I  +        +    E +  TG L ++TG
Sbjct: 325  EGWLVSIKIAFDKKAQKTSVSMNTDNLMKIFTM-----GIDLTKPFEYLFATGNLRSKTG 379

Query: 397  LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
            L L Q +G  V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGFLCPVHTPD
Sbjct: 380  LGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFLCPVHTPD 439

Query: 457  GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAV 516
            GEPCGL+NH+T+ C V + +    +I          L   +GV  I   P    S     
Sbjct: 440  GEPCGLMNHLTAVCEVVTQFVYTASI--------PALLCNLGVTPIDGAPHRSYS---EC 488

Query: 517  LSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS-LGGAYPGLYLF 575
              VLLDG +VG +       +   LR  KV     IP  +EV  +P++     YPGL+LF
Sbjct: 489  YPVLLDGVMVGWVDKDLAPGITDSLRHFKVLREKRIPPWMEVVLIPMTGKPSLYPGLFLF 548

Query: 576  TSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPT 635
            T+P + VRPV+N+ L  EE     LIG  EQ+FM +   +        A   TH+E+ P 
Sbjct: 549  TTPCRLVRPVQNLELGKEE-----LIGTMEQIFMNVAIFED----EVFAGVTTHQELFPH 599

Query: 636  GMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRT 695
             +LSV+AN  P+SDHNQSPRNMYQCQM KQTMGF +   + R+D KLY LQTPQ+P+VR 
Sbjct: 600  SLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRP 659

Query: 696  NTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD 755
            + Y  Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG  HG +Y++E IDLS+ 
Sbjct: 660  SMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEK 719

Query: 756  GNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKG 815
              + D       +  D + L   +D DGLP++G  +  G+PY S  +  T        K 
Sbjct: 720  IKQGDSSLVFGIKPGDPRVLQK-LDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKS 778

Query: 816  SESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMP 874
             E+  VD + V   ++ +   K   I  R  RNP IGDKF+SRHGQKG+ S+LWP  DMP
Sbjct: 779  KENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMP 838

Query: 875  FSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTG 934
            F+  +GM PD++ NPH FPSRMTI ML+ES+A K  +LHG   DATPF  S         
Sbjct: 839  FTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFS--------- 888

Query: 935  TDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQ 994
              E  S ++  GEML+  G+N++G E LYSG+ G EL  +IFIG VYYQRLRHMVSDKFQ
Sbjct: 889  --EENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQ 946

Query: 995  VRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCS 1054
            VR+TG  D++T QPI GR   GGIRFGEMERD+LLAHG ++LLHDRL  CSD  VA VC 
Sbjct: 947  VRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCV 1006

Query: 1055 LCGSVLTATFIHPQKRAIREIGGLPPARAP---KKVTCHACQTSKGMETVAMPYVFRYLA 1111
             CGS+L+     P           PP+ +    +K  C  C  S  ++TV++PYVFRY  
Sbjct: 1007 KCGSLLSPLLEKP-----------PPSWSAMRNRKYNCTLCNRSDTIDTVSVPYVFRYFV 1055

Query: 1112 AELAAMNIKITLQL 1125
            AELAAMNIK+ L +
Sbjct: 1056 AELAAMNIKVKLDV 1069


>gi|66800165|ref|XP_629008.1| RNA polymerase I, second largest subunit [Dictyostelium discoideum
            AX4]
 gi|74896752|sp|Q54BM1.1|RPA2_DICDI RecName: Full=DNA-directed RNA polymerase I subunit rpa2; AltName:
            Full=DNA-directed RNA polymerase I polypeptide 2;
            Short=RNA polymerase I subunit 2
 gi|60462371|gb|EAL60592.1| RNA polymerase I, second largest subunit [Dictyostelium discoideum
            AX4]
          Length = 1130

 Score =  889 bits (2297), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1180 (41%), Positives = 693/1180 (58%), Gaps = 117/1180 (9%)

Query: 10   EPLRELVRHHIESFDYMLDEGLSEM--------FDH------------------------ 37
            E L+ L++ HI+SFD+  D G+  +        F+H                        
Sbjct: 3    EELKSLIQPHIDSFDFFTDHGIDLVLKDSEPLYFEHNSTQYKIRFTDLKLSRPTRNIVEK 62

Query: 38   --------CRQAKISYTGKLMADV------EFQYLDAGSPVVRER--------FNFGQFP 75
                     R+   +Y       +      E   +D G+ V   +         + G+ P
Sbjct: 63   EIKLYPNESRETGTTYNAPFKGAIGLYEVNEMDEMDDGTEVDYNKQEPTHTFEVDLGRLP 122

Query: 76   VMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSF 135
            +M+K+R CHL G   +KL+  +EE  E GGYFI+NG E+V R +++ K N+P+++ R ++
Sbjct: 123  IMVKSRYCHLNGMSPEKLIESREEELEQGGYFIVNGNEKVVRMLVMTKANHPVALHRKAW 182

Query: 136  RDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVD 195
             +R  GYT   + IRCVR D+SS+T  L+Y+ +G   L F  + +E+ LP  ++LKAL D
Sbjct: 183  TNRGPGYTKNGITIRCVRPDRSSITNNLHYINDGQTTLRFLYRRQEFFLPATLLLKALKD 242

Query: 196  TNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHF 255
            T + EI+ ++           +G   +  +++RV++ L E +  ++ T+ + L +IG  F
Sbjct: 243  TTEKEIYENIV----------QGDNENTFLTDRVELSLREQKINNINTQEEVLDYIGSRF 292

Query: 256  QPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
            +       S S   +    I  ++FVHL + NDK+NLLI M+QKL+++V     +DN DS
Sbjct: 293  RARTQFPPSFSNIKIGRWFINQFVFVHLPNYNDKYNLLILMIQKLYAMVGGKCGTDNIDS 352

Query: 316  LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPS 375
               QE+LL GH+  + LKEKL ++L   K  +    E+  K  D    A +KKV++KN  
Sbjct: 353  PAFQEVLLAGHIYGMILKEKLTEYLESTKSFVLKSFEDKKKSGDKLPDA-LKKVLDKN-- 409

Query: 376  KQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
             +I       L TG L + +G+DLQQ +G+ V A++LNFLRFIS FR++HRGA FA ++T
Sbjct: 410  FKIADRFSYFLATGNLRSSSGIDLQQTSGFCVIADKLNFLRFISHFRSIHRGAFFATMKT 469

Query: 436  TSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV 495
            T++RKL+PESWGF CPVHTPDG PCGLLNH++S C V         ++   K +T +   
Sbjct: 470  TAIRKLMPESWGFFCPVHTPDGAPCGLLNHLSSNCLVTVDAAQDPTVQ---KAQTLLPSF 526

Query: 496  LIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK-VSAASVIPD 554
            L   GM+P    +V       L++ LDGRV+G I     E++V  LR L+ +     IP 
Sbjct: 527  LAAHGMLPI--DMVSVYQHQYLTITLDGRVLGKIEPKAGEEMVKMLRYLRSMGNEPSIPK 584

Query: 555  DLEVGYVPLS--LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIR 612
             +E+ Y P +    G Y G+ LFT+  +F+RPV N++      QN ELIGP EQ++MEI 
Sbjct: 585  TMEISYAPPTNVENGQYSGISLFTTGARFMRPVVNLT----SGQN-ELIGPQEQLYMEIA 639

Query: 613  C-PDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSV 671
              P     G       TH E  PT M S++ANLTP+SD+NQSPRNMYQCQMAKQTMG  +
Sbjct: 640  VVPHEVIKGV-----TTHIETSPTAMFSLLANLTPFSDYNQSPRNMYQCQMAKQTMGTPL 694

Query: 672  QALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILN 731
             +  FR D KLY +Q  Q PIV T    K+  ++YP G NA++AV++ TGYDMEDAMI+N
Sbjct: 695  HSYPFRTDNKLYKVQNVQKPIVHTKNQFKFRCNDYPHGCNAVIAVISNTGYDMEDAMIIN 754

Query: 732  KSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLF-RRNKDAKSLHSVIDSDGLPYVGQM 790
            KS+ +RG  HG +Y+ E IDL    ++ ++ +  F R N     L   ID+DGLP+VG++
Sbjct: 755  KSAYERGFGHGSVYKNEYIDLDQGLSRFEQKKTFFGRPNTVVDELDKFIDTDGLPFVGRL 814

Query: 791  IHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDM--KNSKNLPQKAN---IRFRHT 845
            I PGEPY +    +     T   KG E  +++ V +      +   P K N   ++ R  
Sbjct: 815  IKPGEPYYTYIRPSDGRQVTKDYKGKEEAYIEDVRIIFGPNGATRDPSKINNICVKLRFN 874

Query: 846  RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
            RNP+IGDKFSSRHGQKGV SQLWP+I+MPF+  +GM+PD+IINP+AFPSRMTI ML+E +
Sbjct: 875  RNPVIGDKFSSRHGQKGVLSQLWPEINMPFTE-SGMKPDVIINPNAFPSRMTIGMLVEIL 933

Query: 906  AAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSG 965
            A K G++HGKF DAT F             DE+ + +D  GE L   GFN  G E +YSG
Sbjct: 934  AGKAGAIHGKFQDATAFQ-----------FDENNTAIDFFGEQLAKAGFNRFGNEQMYSG 982

Query: 966  VYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMER 1025
              G E  CEIF G  YYQRLRHMV DK+QVR+ G ++ +TRQPIKGRK GGGIRFGEMER
Sbjct: 983  TTGKEFECEIFFGVCYYQRLRHMVKDKYQVRALGKVNALTRQPIKGRKVGGGIRFGEMER 1042

Query: 1026 DSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPK 1085
            DSLLAHGA++ L+DRL   SD+    VC LCGS LT   I+ +K    +           
Sbjct: 1043 DSLLAHGASFCLNDRLMKSSDFAKIKVCKLCGSTLT---IYSKKDYSNQTVS-------- 1091

Query: 1086 KVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
               C +C++S  + T+++PYVF YL AELAA+NI + LQ+
Sbjct: 1092 --ECKSCKSSDSIATISIPYVFTYLVAELAAVNITMKLQV 1129


>gi|328853401|gb|EGG02540.1| hypothetical protein MELLADRAFT_49804 [Melampsora larici-populina
            98AG31]
          Length = 1214

 Score =  889 bits (2297), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/1123 (43%), Positives = 674/1123 (60%), Gaps = 84/1123 (7%)

Query: 39   RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
            R+   +Y GK+ A V +  L+ G P    R  FGQ P+MLK+ +C+L+    ++L+   E
Sbjct: 136  RERMATYAGKISAKVSWS-LNNGPPNHEHR-EFGQLPIMLKSEKCNLKQMTPRQLIDHHE 193

Query: 99   EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
            E+ EMGGYF++NG ER+ R +I+P++N+ ++++R SF +R   YT  A  +RCVR DQSS
Sbjct: 194  ESEEMGGYFLVNGNERLIRFLIVPRRNHAIALIRPSFCNRGNFYTPFACQMRCVRPDQSS 253

Query: 159  VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLT-CCYDEKYKKEK 217
             T+ L+YL NG+V   F  +  EYL+PV ++LKAL+  +D EIF  L    +D+ ++   
Sbjct: 254  QTVTLHYLSNGNVTFRFSWRKNEYLIPVVMLLKALIGASDQEIFAGLAQNAFDDTFR--- 310

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
                    ++R++++L   ++  L T   CL  +G  F+ V++     S   V   ++  
Sbjct: 311  --------TDRIELLLRSFKNYHLPTSALCLHFLGSKFRIVLNCPDDWSDERVGRFLLDR 362

Query: 278  YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
             + VHLN+   K+ LL+FM+QKL++LV     +DNPDS Q+QEIL+PGHL++  LKE+ E
Sbjct: 363  VVLVHLNNATSKYRLLLFMIQKLYALVGGECCADNPDSPQHQEILMPGHLLSSILKERFE 422

Query: 338  DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
            +++   +  +  ++       +F +   ++K M +      G  I   L TG L + TGL
Sbjct: 423  EYIGGIRNQMASDVRRGVASANFRDPKYVQKTMARVDC-DAGKRITYFLATGNLVSPTGL 481

Query: 398  DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDG 457
            DLQQ +G+T+ AE+LNF R+IS FR VHRGA FA L+TT+VRKLLPE+WGFLCPVHTPDG
Sbjct: 482  DLQQMSGFTLIAEKLNFYRYISHFRCVHRGAFFAELKTTTVRKLLPEAWGFLCPVHTPDG 541

Query: 458  EPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVL 517
             PCGLLNH    C++ S      ++            +L  +GM       V       +
Sbjct: 542  SPCGLLNHFAHQCQILSSPSPSSHVP----------ALLTSLGMSQPFDSAVDV--KNYV 589

Query: 518  SVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTS 577
             V LDG V+G    S   K+   LR  K      IP  LEVG+VP   GG YPGL+LF++
Sbjct: 590  CVQLDGEVIGWASLSLCFKMATALRLWKTEGLEKIPPGLEVGFVPRVTGGQYPGLFLFST 649

Query: 578  PPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGM 637
            P + +RPV+ IS     +   ELIGPFEQV+++I C +           +TH EI PT +
Sbjct: 650  PARMMRPVQLIS-----NGKTELIGPFEQVYLDIACTES----EIEKGISTHVEISPTHI 700

Query: 638  LSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNT 697
            LS++ANLTP+SD NQSPRNMYQCQM+KQTMG    A   R D KLY LQT QTPIVR   
Sbjct: 701  LSLLANLTPFSDFNQSPRNMYQCQMSKQTMGTPSSAFNHRTDNKLYRLQTGQTPIVRPAL 760

Query: 698  YTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGN 757
            +  Y +D +P GTNA+VAV++YTGYDMEDAMILNKS  +RG  HG IY+++ +DL  D  
Sbjct: 761  HDHYHMDHFPNGTNAVVAVISYTGYDMEDAMILNKSGHERGFGHGTIYKSQIVDLQPDRG 820

Query: 758  KVDRGQKLFRRNKD--AKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKG 815
            +    ++ F    D   K +   + +DG+  +G  +  G+P C+  D+ T        KG
Sbjct: 821  R-GSSERHFGLGDDHKLKDMAQHLGADGIAMIGSRLKRGDPLCAYVDRVTGKGGWEKYKG 879

Query: 816  SESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMP 874
             E  FV+ + +   +S      K + + R  R+P+IGDKFSSRHGQKGVCSQ WP +DMP
Sbjct: 880  DEEAFVEEIRLIGNDSSTTECTKIHFKLRIPRSPVIGDKFSSRHGQKGVCSQKWPAVDMP 939

Query: 875  FSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTG 934
            F+  +GM+PD+IINPHAFPSRMTI M +ES+A K G++HG   DATPF  + K T  +  
Sbjct: 940  FT-ESGMQPDVIINPHAFPSRMTIGMFVESLAGKAGAMHGIAQDATPFRFNEKDTPSEY- 997

Query: 935  TDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQ 994
                       G  L   GFNYHG E +YSG+ G E   +I+IG VYYQRLRHMV DK+Q
Sbjct: 998  ----------FGTQLLASGFNYHGNEPMYSGITGEEFVADIYIGLVYYQRLRHMVGDKWQ 1047

Query: 995  VRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCS 1054
            VR+TG +++ T QPIKGRKRGGGIRFGEMERD+LLAHG ++LL DRL  CSDY  A +C 
Sbjct: 1048 VRTTGQVEKTTHQPIKGRKRGGGIRFGEMERDALLAHGTSFLLQDRLMNCSDYSTAWICR 1107

Query: 1055 LCGSVLTATF---IHPQKRAIREIG-GLPP--------ARAPKKVTCHACQTS------- 1095
             CG + +  +   +  +   I + G GL P           PK   C  C+ S       
Sbjct: 1108 KCGILSSIGYENRLQEELEGIDQGGIGLQPDSYSNLMKVNGPKGEFCRFCRGSEDGLGNQ 1167

Query: 1096 ---------KGMET----VAMPYVFRYLAAELAAMNIKITLQL 1125
                     KG+E+    + +P+VFRYL AEL AM IKI L++
Sbjct: 1168 MGMGLEGIVKGLESHMDVIEIPFVFRYLIAELMAMGIKIALKV 1210


>gi|50290705|ref|XP_447785.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49527096|emb|CAG60734.1| unnamed protein product [Candida glabrata]
          Length = 1202

 Score =  889 bits (2297), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/1126 (43%), Positives = 683/1126 (60%), Gaps = 95/1126 (8%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
             RQ   SY GK++  +++   D G  V  E  + G  P+ML++ RCHL      +LV  K
Sbjct: 123  ARQRLTSYRGKILLKLKWSVND-GENVFSEVRDCGGLPIMLQSNRCHLNKMSPHELVQHK 181

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EE+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R   Y+   + IR VR DQ+
Sbjct: 182  EESDELGGYFIINGIEKLIRMLIVQRRNHPMAIIRPSFANRGASYSQYGIQIRSVRPDQT 241

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            S T  L+YL +G V   F  +  EYL+PV +++KALVDT+D EIF+              
Sbjct: 242  SQTNVLHYLNDGQVTFRFSWRKNEYLIPVVMIMKALVDTSDREIFD-------------- 287

Query: 218  GAVGS----PLVSERVKIILAEVQDL--SLTTRLQCLQHIGEHFQPVIDGLQSESYYAVA 271
            G +GS      +++R++++L   +     L  R Q LQ++G+ F+ V      +S Y V 
Sbjct: 288  GIIGSNTNNSFLTDRLELLLRGFKKRYPQLKNRTQVLQYLGDKFRLVFQASPDKSDYEVG 347

Query: 272  ETVIRDYIFVHL--NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
            + V+   + VHL  N N DKF +L+FM++KL+SLV      DNPD+ Q+QE+LL G L  
Sbjct: 348  QEVLNRIVLVHLGSNGNMDKFRMLLFMVRKLYSLVAGECCPDNPDATQHQEVLLGGFLYG 407

Query: 330  IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEK---NPSKQIGTSIETML 386
            + LKEK++++L+     ++ +I N G   +F    N KK M +     +  IG+ ++  L
Sbjct: 408  MILKEKIDEYLQGIVAQVRTDI-NRGVAINF----NEKKYMSRVLMRVNDNIGSKMQYFL 462

Query: 387  KTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESW 446
             TG L +Q+GLDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESW
Sbjct: 463  STGNLVSQSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESW 522

Query: 447  GFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLP 506
            GFLCPVHTPDG PCGLLNH    CR+++         D SK    +  +L  +G+ P+  
Sbjct: 523  GFLCPVHTPDGSPCGLLNHFAHKCRIST------TQSDVSK----VPELLYSLGVTPASH 572

Query: 507  KLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV-IPDDLEVGYVPLSL 565
                   P++  V LDG+++G     +   +   LR  KV   +  +P DLE+GYVP S 
Sbjct: 573  TFAAG--PSLCCVQLDGKIIGWTSHEQGRVIADTLRFWKVEGETPGLPKDLEIGYVPPSS 630

Query: 566  GGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAF 625
             G YPGLY+F    + +RPVR + L  E+     ++GPFEQV+M I           +  
Sbjct: 631  KGQYPGLYIFGGHSRMMRPVRYLPLDKED-----IVGPFEQVYMNIAVTPQEIQNNIH-- 683

Query: 626  PATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHL 685
              TH E  PT +LS++ANLTP+SD NQSPRNMYQCQM KQTMG    AL  R+D KLY L
Sbjct: 684  --THVEFSPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRL 741

Query: 686  QTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIY 745
            QT QTPIV+ N Y  YG+D +P GTNA+VAV++YTGYDM+DAMI+NKS+ +RG  +G +Y
Sbjct: 742  QTGQTPIVKANLYDDYGMDNFPNGTNAVVAVISYTGYDMDDAMIINKSADERGFGYGTMY 801

Query: 746  QTETIDLSDDGNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDK 803
            + E +DLS + ++ D   + F    D   K     +D DGLPY+G  +  G+P C+ +D 
Sbjct: 802  KVEKVDLSLNRSRGDPVTQHFGFGTDEWPKEWLDKLDEDGLPYIGTYVEEGDPICAYFDD 861

Query: 804  TTNSWRTNSRKGSESVFVDYVAV--DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQK 861
            T    +  +   SE  +++ V +  D  N     Q  +I++R  R P IGDKFSSRHGQK
Sbjct: 862  TIGKTKIKTYHSSEPAYIEEVNLIGDESNKFQELQTVSIKYRIRRTPQIGDKFSSRHGQK 921

Query: 862  GVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATP 921
            GVCS+ WP IDMPFS  TG++PD+IINPHAFPSRMTI M +ES+A K G+LHG   D+TP
Sbjct: 922  GVCSRKWPTIDMPFSE-TGIQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTP 980

Query: 922  FANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVY 981
            +             +E  +  D  GE L   G+NYHG E +YSG  G EL C+I+IG VY
Sbjct: 981  WI-----------FNEQDTPADYFGEQLLKAGYNYHGNEPMYSGATGEELRCDIYIGVVY 1029

Query: 982  YQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRL 1041
            YQRLRHMV+DKFQVRSTG ++ +T QP+KGRKR GGIR GEMERD+L+ HG ++LL DRL
Sbjct: 1030 YQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIGHGTSFLLQDRL 1089

Query: 1042 HTCSDYHVADVCSLCGSVLTATFIHPQKRAIREI----GGLPPARAPKKVTCHACQTSKG 1097
               SDY  A +C  CGS+LT     P+  A+  +      +    A K +  H  +T + 
Sbjct: 1090 LNSSDYTQAAICRECGSILTTQQTVPRIGAVSSVCCRRCAVKFEDAKKTLFEHEEKTEEK 1149

Query: 1098 M----------------------ETVAMPYVFRYLAAELAAMNIKI 1121
            +                       TVA+P+V +YL +EL+AM I++
Sbjct: 1150 IFIDDSQIWEDGQGQKFVGGNDTTTVAIPFVLKYLDSELSAMGIRL 1195


>gi|34535223|dbj|BAC87247.1| unnamed protein product [Homo sapiens]
          Length = 1135

 Score =  889 bits (2297), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/1163 (42%), Positives = 675/1163 (58%), Gaps = 112/1163 (9%)

Query: 12   LRELVRHHIESFDYMLDEGLS--------------------EMFD--------------- 36
            L+EL R H+ESF+Y + EGL                      + D               
Sbjct: 35   LQELTRAHVESFNYAVHEGLGLAVQAIPPFEFAFKDERISFTILDAVISPPTVPKGTICK 94

Query: 37   -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
                    CR  + +Y GKL AD+ +        ++++    G  P+M+K++ C+L+   
Sbjct: 95   EANVYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQFL--GYVPIMVKSKLCNLRNLP 152

Query: 90   SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
             Q L+   EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R  ++ R  GYT   V +
Sbjct: 153  PQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSM 212

Query: 150  RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
             CVR++ S+V + L+YL NG+V L F  + + + LP+G  LKALV  +D +IF  L    
Sbjct: 213  HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269

Query: 210  DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
                 KE  +     VS+ ++I++ E      +T+ Q L ++GE F+  ++         
Sbjct: 270  ---KGKEDDSFLRNSVSQMLRIVMEE----GCSTQKQVLNYLGECFRVKLNVPDWYPNEQ 322

Query: 270  VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
             AE +    I +HL  N +KF +L  M +KLF+L     + DNPDSL NQE+L PG L  
Sbjct: 323  AAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFL 382

Query: 330  IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
            ++LKEKLE WL   K     + +      +  NL  I  +        +    E +  TG
Sbjct: 383  MFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMRIFTM-----GIDLTKPFEYLFATG 437

Query: 390  RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
             L ++TGL L Q +G  V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGFL
Sbjct: 438  NLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFL 497

Query: 450  CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
            CPVHTPDGEPCGL+NH+T+ C V + +    +I          L   +GV  I   P   
Sbjct: 498  CPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASI--------PALLCNLGVTPIDGAPHRS 549

Query: 510  KSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS-LGGA 568
             S       VLLDG +VG +       +   LR  KV     IP  +EV  +P++     
Sbjct: 550  YS---ECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEVVLIPMTGKPSL 606

Query: 569  YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPAT 628
            YPGL+LFT+P + VRPV+N++L  EE     LIG  EQ+FM +   +        A   T
Sbjct: 607  YPGLFLFTTPCRLVRPVQNLALGKEE-----LIGTMEQIFMNVAIFED----EVFAGVTT 657

Query: 629  HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTP 688
            H+E+ P  +LSV+AN  P+SDHNQSPRNMYQCQM KQTMGF +   + R+D KLY LQTP
Sbjct: 658  HQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTP 717

Query: 689  QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
            Q+P+VR + Y  Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG  HG +Y++E
Sbjct: 718  QSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSE 777

Query: 749  TIDLSDDGNKVDRGQK--LFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN 806
             IDLS+   K+ +G    +F        +   +D DGLP++G  +  G+PY S  +  T 
Sbjct: 778  FIDLSE---KIKQGDSSLVFGIKPGGPRVLQKLDDDGLPFIGAKLQYGDPYYSYLNLNTG 834

Query: 807  SWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCS 865
                   K  E+  VD + V   ++ +   K   I  R  RNP IGDKF+SR GQKG+ S
Sbjct: 835  ESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRRGQKGILS 894

Query: 866  QLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANS 925
            +LWP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+A K  +LHG   DATPF  S
Sbjct: 895  RLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFS 953

Query: 926  VKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRL 985
                       E  S ++  GEML+  G+N++G E LYSG+ G EL  +IFIG VYYQRL
Sbjct: 954  -----------EENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRL 1002

Query: 986  RHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCS 1045
            RHMVSDKFQVR+TG  D++T QPI GR   GGIRFGEMERD+LLAHG ++LLHDRL  CS
Sbjct: 1003 RHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCS 1062

Query: 1046 DYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP---KKVTCHACQTSKGMETVA 1102
            D  VA VC  CGS+L+     P           PP+ +    +K  C  C  S  ++TV+
Sbjct: 1063 DRSVAHVCVKCGSLLSPLLEKP-----------PPSWSAMRNRKYNCTLCSRSDTIDTVS 1111

Query: 1103 MPYVFRYLAAELAAMNIKITLQL 1125
            +PYVFRY  AELAAMNIK+ L +
Sbjct: 1112 VPYVFRYFVAELAAMNIKVKLDV 1134


>gi|317032172|ref|XP_001394181.2| DNA-directed RNA polymerase I subunit RPA135 [Aspergillus niger CBS
            513.88]
 gi|350631029|gb|EHA19400.1| hypothetical protein ASPNIDRAFT_55936 [Aspergillus niger ATCC 1015]
          Length = 1236

 Score =  889 bits (2296), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1155 (42%), Positives = 690/1155 (59%), Gaps = 115/1155 (9%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPV--VRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
            CR+   +Y GKL A +E++ ++ G  +  VRE    GQ P+ML+T RCHL+ A   +LV 
Sbjct: 128  CRERHATYRGKLRARIEWR-VNNGDWMESVRE---LGQVPIMLRTNRCHLEKATPSELVE 183

Query: 96   LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
             KEE+ E+GGYFI+NG E++ R +++ K+NYPM+++R SF  R   YT   V IR VR D
Sbjct: 184  HKEESEELGGYFIVNGNEKLIRMLVVGKRNYPMAIIRGSFVRRGHTYTKYGVQIRSVRPD 243

Query: 156  QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
            Q+S T  L+YL +G++   F  +  EYL+PV ++LKALV+TND EIF  +      +   
Sbjct: 244  QTSQTNVLHYLTDGNLTFRFSWRKAEYLVPVMMILKALVETNDREIFEGIVGSASSE--- 300

Query: 216  EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
                + +  V++RV+++L   +  +  +R  C  ++GE F+PV+      S        +
Sbjct: 301  ---GIKNTFVTDRVELLLRVYKAYNTHSRAACRAYLGEKFRPVLGVPADMSNEDAGTEFL 357

Query: 276  RDYIFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
            R  +  HL + N       DKF +++FM++KL++LV      DNPD++ NQEILL G L 
Sbjct: 358  RKVVLPHLGNQNVTENQDYDKFKMILFMIRKLYALVAGDCAPDNPDAVSNQEILLGGFLY 417

Query: 329  TIYLKEKLEDWLRKGKKLIQD-EIENNGKKFD--FFNLANIKKVMEKNPSKQIGTSIETM 385
             + LKE+LE+W+R  + +++D    N G KF    F    + KV++++ ++ +G ++E  
Sbjct: 418  GMILKERLEEWVRSFQPILRDWSNRNGGAKFTDPAFERDFLAKVVKRS-NENLGGALEYF 476

Query: 386  LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
            L TG L + TGLDLQQ +GYTV AE++NF RFIS FR +HRG+ FA L+TT+VRKLLPES
Sbjct: 477  LSTGNLVSPTGLDLQQPSGYTVMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPES 536

Query: 446  WGFLCPVHTPDGEPCGLLNHMTSTCRVA-SYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
            WGF CPVHTPDG PCGLLNH+   C +A S  D+           T I + L+ +G+   
Sbjct: 537  WGFFCPVHTPDGSPCGLLNHLAHKCLIATSDVDT-----------THIPKALVQLGVRSD 585

Query: 505  LPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS 564
                V       ++V LDGR++G     +   +   LRR KV  +  IP +LE+GY+P +
Sbjct: 586  SSVSVTES----VTVQLDGRIIGYCSPKQASAIANTLRRWKVMGSDKIPRELEIGYIPNT 641

Query: 565  LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRN 623
             GG YPG+Y+F+   +  RPV+++ L       ++ +GPFEQ FMEI C P     G   
Sbjct: 642  NGGQYPGIYMFSQAARMYRPVKHLGL-----DKLDYVGPFEQPFMEIACLPQDLISG--- 693

Query: 624  AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
               +TH E  PT +LS+VAN+TP+SD NQSPRNMYQCQM+KQTMG    A+++R D KLY
Sbjct: 694  --VSTHIEFTPTNILSIVANMTPFSDQNQSPRNMYQCQMSKQTMGTPGTAIQYRTDNKLY 751

Query: 684  HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
             LQT QTPIVR   Y  YG+D +P GTNA+VA+++YTGYDM+DAMI+NKSS +RG  +G 
Sbjct: 752  RLQTGQTPIVRPPLYNAYGLDNFPNGTNAVVAIISYTGYDMDDAMIINKSSHERGFGYGT 811

Query: 744  IYQTETIDLSDDGNKVDRGQ----KLFRRNKDAK---SLHSVIDSDGLPYVGQMIHPGEP 796
            IY+T+   L +  ++  + +    KLF      +      + +D DGLP++G  +  G  
Sbjct: 812  IYKTKIHSLDEKDSRRGKSRREVTKLFGFAPGGEIRADWRATLDEDGLPHIGARVKEGSL 871

Query: 797  YCSI----YDKTTNSW-------RTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRH 844
              +     YD  ++S+            K +E  ++D V +    S   P +A ++++R 
Sbjct: 872  VAAWHTVRYDAASDSYVNVDGITHFVKYKDAEEGYIDSVRILGAESGVEPGQALSVKYRI 931

Query: 845  TRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLES 904
             R PIIGDKFSSRHGQKGVCSQLWP +DMPFS  +G++PDLIINPHAFPSRMTIA ++ES
Sbjct: 932  PRKPIIGDKFSSRHGQKGVCSQLWPAVDMPFS-ESGIQPDLIINPHAFPSRMTIAQMIES 990

Query: 905  VAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYS 964
            +A K G+LHG   D+TPF  S           E  +  D  G  LR  G+NY G E LYS
Sbjct: 991  MAGKAGALHGHPQDSTPFQFS-----------EENTAADYFGHQLRKAGYNYFGNEPLYS 1039

Query: 965  GVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEME 1024
            G+ G E   +IFIG V+YQRLRHMV+DKFQVR+TG ++Q+T QP+KGR +GGGIR GEME
Sbjct: 1040 GITGKEFAADIFIGVVHYQRLRHMVNDKFQVRTTGPVNQLTGQPVKGRAKGGGIRVGEME 1099

Query: 1025 RDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFI------------HPQKRAI 1072
            RDSL+AHGAA++L DRL  CSD   + +C  CGS L+                  +  + 
Sbjct: 1100 RDSLIAHGAAHILQDRLMNCSDATRSWICRDCGSFLSTQVAVSSAGSSKARIAAAKAASN 1159

Query: 1073 REIGGLPPARAPKKVTCHACQTSKGME----------------------TVAMPYVFRYL 1110
            +  G    + AP  V C  C      E                       VA+P V RYL
Sbjct: 1160 QHSGANAISGAPSIVRCRRCAREAVFEDSRADVWEDGDGRRYVGGDNVTVVAVPGVLRYL 1219

Query: 1111 AAELAAMNIKITLQL 1125
              ELAAM I++   +
Sbjct: 1220 DVELAAMGIRMKFWV 1234


>gi|410077755|ref|XP_003956459.1| hypothetical protein KAFR_0C03320 [Kazachstania africana CBS 2517]
 gi|372463043|emb|CCF57324.1| hypothetical protein KAFR_0C03320 [Kazachstania africana CBS 2517]
          Length = 1206

 Score =  888 bits (2295), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/1133 (42%), Positives = 685/1133 (60%), Gaps = 113/1133 (9%)

Query: 39   RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
            RQ   +Y GKLM  +++   D G     E  + G  PVML++ RCHL      +LV  +E
Sbjct: 130  RQRLATYKGKLMLKLKWSVND-GEETYSEIRDCGGLPVMLQSNRCHLNKLSPHELVRERE 188

Query: 99   EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
            E+ EMGGYFI+NG+E++ R +I+ ++N+PM+++R SF +R   Y+   + IR VR DQ+S
Sbjct: 189  ESDEMGGYFIINGIEKLIRMLIVQRRNHPMAIIRPSFVNRGASYSQYGIQIRSVRPDQTS 248

Query: 159  VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKG 218
             T  L+YL +G V   F  +  EYL+PV ++LKAL D +D EIF+              G
Sbjct: 249  QTNVLHYLNDGQVTFRFSWRKNEYLIPVVMILKALYDISDREIFD--------------G 294

Query: 219  AVGS----PLVSERVKIILAEVQDL--SLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAE 272
             VGS      +++R++++L   +    +L  R Q LQ++G+ F+ V      +S Y V +
Sbjct: 295  IVGSDTANSFLTDRLELLLRGFKKRYPTLQNRTQILQYLGDKFRFVFQASPDKSDYEVGQ 354

Query: 273  TVIRDYIFVHL--NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITI 330
             VI   + VHL  N+N DK  +L+FM++KL+SLV      DNPD+ Q+QE+LL G L  +
Sbjct: 355  EVINRIVLVHLGQNNNQDKLRMLLFMIRKLYSLVAGECAPDNPDATQHQEVLLGGFLYGM 414

Query: 331  YLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGR 390
             +KEK++++L+     ++ ++ N G   +F +   + +V+ +  ++ IG+ ++  L TG 
Sbjct: 415  IIKEKIDEYLQGIMAQVRTDV-NRGMAINFKDRKYMSRVLMR-VNENIGSKLQYFLSTGN 472

Query: 391  LATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLC 450
            L +Q+GLDLQQ +GY V AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLC
Sbjct: 473  LVSQSGLDLQQVSGYVVVAEKINFHRFISHFRMVHRGSFFAQLKTTAVRKLLPESWGFLC 532

Query: 451  PVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVK 510
            PVHTPDG PCGLLNH    CR+++         D S+    +  +L  +G+ P+      
Sbjct: 533  PVHTPDGSPCGLLNHFAHKCRIST------KQSDVSQ----VAPLLYSLGVAPASHTFAA 582

Query: 511  SGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV-IPDDLEVGYVPLSLGGAY 569
               P++  V LDG+++G +   + + +   LR LKV   +  +P DLE+GYVP S  G Y
Sbjct: 583  G--PSLCCVQLDGKIIGCVSHEQGKIIADTLRFLKVEGKTPGLPLDLEIGYVPPSTKGQY 640

Query: 570  PGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPAT 628
            PGLYLF    + +RPVR + L  E+     ++GPFEQV+M I   P   +         +
Sbjct: 641  PGLYLFAGHSRMMRPVRYLPLDKED-----IVGPFEQVYMNIAVTPQEIENNIH-----S 690

Query: 629  HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTP 688
            H E  PT +LS++ANLTP+SD NQSPRNMYQCQM KQTMG    AL  R+D KLY LQ+ 
Sbjct: 691  HVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQSG 750

Query: 689  QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
            QTPIV+ N Y +YG+D +P GTNA+VAV++YTGYDM+DAMI+NKS+ +RG  +G +Y+ E
Sbjct: 751  QTPIVKANLYDEYGMDNFPNGTNAVVAVISYTGYDMDDAMIINKSADERGFAYGTMYKVE 810

Query: 749  TIDLSDDGNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN 806
             +DL+ + N+ D   + F    D   K     +D DGLPY+G  +  G+P C+ +D T N
Sbjct: 811  KVDLALNRNRGDPITQHFGFGNDEWPKEWLDKLDDDGLPYIGTYVEEGDPICAYFDDTLN 870

Query: 807  SWRTNSRKGSESVFVDYVAV--DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVC 864
              +T +   SE  +++ V +  D  N     Q  +I++R  R P IGDKFSSRHGQKGVC
Sbjct: 871  KTKTKTYHSSEPAYIEEVNLIGDDSNKFQELQTVSIKYRIRRTPQIGDKFSSRHGQKGVC 930

Query: 865  SQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFAN 924
            S+ WP IDMPFS  TG++PD+IINPHAFPSRMTI M +ES+A K GSLHG   DATP+  
Sbjct: 931  SRKWPTIDMPFSE-TGIQPDVIINPHAFPSRMTIGMFVESLAGKAGSLHGIAQDATPWI- 988

Query: 925  SVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQR 984
                       DE+ +  D  G+ L   G+NYHG E +YSG  G EL  +I++G VYYQR
Sbjct: 989  ----------FDENDTPADYFGDQLIKAGYNYHGNEPMYSGATGEELRADIYVGVVYYQR 1038

Query: 985  LRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTC 1044
            LRHMV+DKFQVRSTG ++ +T QP+KGRKR GGIR GEMERD+L+ HG +++L DRL   
Sbjct: 1039 LRHMVNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIGHGTSFILQDRLLNS 1098

Query: 1045 SDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTS--------- 1095
            SDY    +C  CGS+LT       ++++  IG      A  +V C  C  +         
Sbjct: 1099 SDYTQTSICRECGSILTT------QQSVPRIG------ASSQVFCRRCAATFEEAKQLIA 1146

Query: 1096 ---------------------------KGMETVAMPYVFRYLAAELAAMNIKI 1121
                                           TVA+P+V +YL +EL AM I++
Sbjct: 1147 SYEGEDSIFIDDSQIWEDGQGNKFVGGNNTTTVAIPFVLKYLDSELTAMGIRL 1199


>gi|10433976|dbj|BAB14082.1| unnamed protein product [Homo sapiens]
          Length = 1079

 Score =  888 bits (2295), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/1123 (43%), Positives = 669/1123 (59%), Gaps = 88/1123 (7%)

Query: 12   LRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNF 71
            L+EL R H+ESF+Y + EGL        QA I++            ++  S  + ++F  
Sbjct: 35   LQELTRAHVESFNYAVHEGLGLAV----QADINWA-----------VNGISKGIIKQF-L 78

Query: 72   GQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMV 131
            G  P+M+K++ C+L+    Q L+   EEA EMGGYFI+NG+E+V R +I+P++N+P++M+
Sbjct: 79   GYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMI 138

Query: 132  RSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLK 191
            R  ++ R  GYT   V + CVR++ S+V + L+YL NG+V L F  + + +  P+G  LK
Sbjct: 139  RPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFRPLGFALK 198

Query: 192  ALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHI 251
            ALV  +D +IF  L         KE  +     VS+ ++I++ E       T+ Q L ++
Sbjct: 199  ALVSFSDYQIFQELI------KGKEDDSFLRNSVSQMLRIVMEE----GCLTQKQVLNYL 248

Query: 252  GEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSD 311
            GE F+  ++          AE +    I +HL  N +KF +L  M +KLF+L     + D
Sbjct: 249  GECFRVKLNVPDWYPNEQAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMED 308

Query: 312  NPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVME 371
            NPDSL NQE+L PG L  ++LKEKLE WL   K     + +      +  NL  I  +  
Sbjct: 309  NPDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMRIFTM-- 366

Query: 372  KNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFA 431
                  +    E +  TG L ++TGL L Q +G  V A++LNF+R++S FR VHRGA FA
Sbjct: 367  ---GIDLTKPFEYLFATGNLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFA 423

Query: 432  GLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS 491
             +RTT+VR+LLPESWGFLCPVHTPDGEPCGL+NH+T+ C V + +              S
Sbjct: 424  KMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQF----------VYTAS 473

Query: 492  ILRVLIGVGMIPSLPKLVKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVS 547
            I  +L  +G+ P     +   P    S    VLLDG +VG +       +   LR  KV 
Sbjct: 474  IPALLCNLGVTP-----IDGAPHRSYSECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVL 528

Query: 548  AASVIPDDLEVGYVPLS-LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQ 606
                IP  +EV  +P++     YPGL+LFT+P + VRPV+N++L  EE     LIG  EQ
Sbjct: 529  REKRIPPWMEVVLIPMTGKPSLYPGLFLFTTPCRLVRPVQNLALGKEE-----LIGTMEQ 583

Query: 607  VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQT 666
            +FM +   +        A   TH+E+ P  +LSV+AN  P+SDHNQSPRNMYQCQM KQT
Sbjct: 584  IFMNVAIFED----EVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQT 639

Query: 667  MGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMED 726
            MGF +   + R+D KLY LQTPQ+P+VR + Y  Y +D YP GTNAIVAV++YTGYDMED
Sbjct: 640  MGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMED 699

Query: 727  AMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPY 786
            AMI+NK+S +RG  HG +Y++E IDLS+   + D       +  D + L   +D DGLP+
Sbjct: 700  AMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQK-LDDDGLPF 758

Query: 787  VGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHT 845
            +G  +  G+PY S  +  T        K  E+  VD + V   ++ +   K   I  R  
Sbjct: 759  IGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVRITMRVP 818

Query: 846  RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
            RNP IGDKF+SRHG+KG+ S+LWP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+
Sbjct: 819  RNPTIGDKFASRHGRKGILSRLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESM 877

Query: 906  AAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSG 965
            A K  +LHG   DATPF  S           E  S ++  GEML+  G+N++G E LYSG
Sbjct: 878  AGKSAALHGLCHDATPFIFS-----------EENSALEYFGEMLKAAGYNFYGTERLYSG 926

Query: 966  VYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMER 1025
            + G EL  +IFIG VYYQRLRHMVSDKFQVR+TG  D++T QPI GR   GGIRFGEMER
Sbjct: 927  ISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMER 986

Query: 1026 DSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP- 1084
            D+LLAHG ++LLHDRL  CSD  VA VC  CGS+L+     P           PP+ +  
Sbjct: 987  DALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKP-----------PPSWSAM 1035

Query: 1085 --KKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
              +K  C  C  S  ++TV++PYVFRY  AELAAMNIK+ L +
Sbjct: 1036 RNRKYNCTLCSRSDTIDTVSVPYVFRYFVAELAAMNIKVKLDV 1078


>gi|358367426|dbj|GAA84045.1| DNA-directed RNA polymerase I subunit beta [Aspergillus kawachii IFO
            4308]
          Length = 1236

 Score =  888 bits (2295), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/1155 (42%), Positives = 689/1155 (59%), Gaps = 115/1155 (9%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPV--VRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
            CR+   +Y GKL A +E++ ++ G  +  VRE    GQ P+ML+T RCHL+ A   +LV 
Sbjct: 128  CRERHATYRGKLRARLEWR-VNNGDWMESVRE---LGQVPIMLRTNRCHLEKATPNELVE 183

Query: 96   LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
             KEE+ E+GGYFI+NG E++ R +++ K+NYPM++VR SF  R   YT   V IR VR D
Sbjct: 184  HKEESEELGGYFIVNGNEKLIRMLVVGKRNYPMAIVRGSFVRRGHTYTKYGVQIRSVRPD 243

Query: 156  QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
            Q+S T  L+YL +G++   F  +  EYL+PV ++LKALV+TND EIF  +      +   
Sbjct: 244  QTSQTNVLHYLTDGNLTFRFSWRKAEYLVPVMMILKALVETNDREIFEGIVGSASSE--- 300

Query: 216  EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
                + +  V++RV+++L   +  +  +R  C  ++GE F+PV+      S        +
Sbjct: 301  ---GIKNTFVTDRVELLLRVYKAYNTHSRAACRAYLGEKFRPVLGVPADMSNEDAGTEFL 357

Query: 276  RDYIFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
            R  +  HL + N       DKF +L+FM++KL++LV      DNPD++ NQEILL G L 
Sbjct: 358  RKVVLPHLGNQNVTENQDYDKFKMLLFMIRKLYALVAGDCAPDNPDAVSNQEILLGGFLY 417

Query: 329  TIYLKEKLEDWLRKGKKLIQDEIENN-GKKFD--FFNLANIKKVMEKNPSKQIGTSIETM 385
             + LKE+LE+W+R  + +++D    N G  F    F    + KV++++ ++ IG ++E  
Sbjct: 418  GMILKERLEEWVRSFQPILRDWSNRNAGATFTDPAFERDFLAKVVKRS-NENIGGALEYF 476

Query: 386  LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
            L TG L + TGLDLQQ +GYTV AE++NF RFIS FR +HRG+ FA L+TT+VRKLLPES
Sbjct: 477  LSTGNLVSPTGLDLQQPSGYTVMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPES 536

Query: 446  WGFLCPVHTPDGEPCGLLNHMTSTCRVA-SYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
            WGF CPVHTPDG PCGLLNH+   C +A S  D+           T I + L+ +G+   
Sbjct: 537  WGFFCPVHTPDGSPCGLLNHLAHKCLIATSDVDT-----------THIPKALVQLGVRSD 585

Query: 505  LPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS 564
                V       ++V LDGR++G     +   +   LRR KV  +  IP +LE+GY+P +
Sbjct: 586  SSVSVTES----VTVQLDGRIIGYCSPKQASAIANTLRRWKVMGSDKIPRELEIGYIPNT 641

Query: 565  LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRN 623
             GG YPG+Y+F+   +  RPV+++ L       ++ +GPFEQ FMEI C P     G   
Sbjct: 642  NGGQYPGIYMFSQAARMYRPVKHLGL-----DKLDYVGPFEQPFMEIACLPQDLISG--- 693

Query: 624  AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
               +TH E  PT +LS+VAN+TP+SD NQSPRNMYQCQM+KQTMG    A+++R D KLY
Sbjct: 694  --VSTHIEFTPTNILSIVANMTPFSDQNQSPRNMYQCQMSKQTMGTPGTAIQYRTDNKLY 751

Query: 684  HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
             LQT QTPIVR   Y  YG+D +P GTNA+VA+++YTGYDM+DAMI+NKSS +RG  +G 
Sbjct: 752  RLQTGQTPIVRPPLYNAYGLDNFPNGTNAVVAIISYTGYDMDDAMIINKSSHERGFGYGT 811

Query: 744  IYQTETIDLSDDGNKVDRGQ----KLFRRNKDAK---SLHSVIDSDGLPYVGQMIHPGEP 796
            IY+T+   L +  ++  + +    KLF      +      + +D DGLP++G  +  G  
Sbjct: 812  IYKTKIHSLDEKDSRRGKSRREVTKLFGFAPGGEIRADWRATLDEDGLPHIGARVKEGSL 871

Query: 797  YCSI----YDKTTNSW-------RTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRH 844
              +     YD  ++S+            K +E  ++D V +    S   P +A ++++R 
Sbjct: 872  VAAWHTVRYDAASDSYVNVDGITHFVKYKDAEEGYIDSVRILGAESGVEPGQALSVKYRI 931

Query: 845  TRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLES 904
             R PIIGDKFSSRHGQKGVCSQLWP +DMPFS  +G++PDLIINPHAFPSRMTIA ++ES
Sbjct: 932  PRKPIIGDKFSSRHGQKGVCSQLWPAVDMPFS-ESGIQPDLIINPHAFPSRMTIAQMIES 990

Query: 905  VAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYS 964
            +A K G+LHG   D+TPF  S           E  +  D  G  LR  G+NY G E LYS
Sbjct: 991  MAGKAGALHGHPQDSTPFQFS-----------EENTAADYFGHQLRKAGYNYFGNEPLYS 1039

Query: 965  GVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEME 1024
            G+ G E   +IFIG V+YQRLRHMV+DKFQVR+TG ++Q+T QP+KGR +GGGIR GEME
Sbjct: 1040 GITGKEFAADIFIGVVHYQRLRHMVNDKFQVRTTGPVNQLTGQPVKGRAKGGGIRVGEME 1099

Query: 1025 RDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFI------------HPQKRAI 1072
            RDSL+AHGAA++L DRL  CSD   + +C  CGS L+                  +  + 
Sbjct: 1100 RDSLIAHGAAHILQDRLMNCSDATRSWICRDCGSFLSTQVAVSSAGSSKARIAAAKAASN 1159

Query: 1073 REIGGLPPARAPKKVTCHACQTSKGME----------------------TVAMPYVFRYL 1110
            +  G    + AP  V C  C      E                       VA+P V RYL
Sbjct: 1160 QHSGANAISGAPSIVRCRRCAREAVFEDSRADVWEDGDGRRYVGGDNVTVVAVPGVLRYL 1219

Query: 1111 AAELAAMNIKITLQL 1125
              ELAAM I++   +
Sbjct: 1220 DVELAAMGIRMKFWV 1234


>gi|402891936|ref|XP_003909184.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 3
            [Papio anubis]
          Length = 1070

 Score =  888 bits (2294), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/1097 (44%), Positives = 658/1097 (59%), Gaps = 74/1097 (6%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR  + +Y GKL AD+ +        ++++    G  P+M+K++ C+L     Q L+   
Sbjct: 38   CRGRRSTYRGKLTADINWAVNGISKGIIKQ--CLGYVPIMVKSKLCNLHSLPPQALIEHH 95

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R  ++ R  GYT   V + CVR++ S
Sbjct: 96   EEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSMHCVREEHS 155

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            +V + L+YL NG+V L F  + + + LP+G  LKALV  +D +IF  L         KE 
Sbjct: 156  AVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI------KGKED 209

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
             +     VS+ ++I++ E      +T+ Q L ++GE F+  ++          AE +   
Sbjct: 210  DSFLRNSVSQMLRIVMEE----GCSTQKQVLNYLGECFRVKLNVPDWYPNEQAAEFLFNQ 265

Query: 278  YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
             I +HL  + +KF +L  M +KLF+L     + DNPDSL NQE+L PG L  ++LKEKLE
Sbjct: 266  CICIHLKSSTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKEKLE 325

Query: 338  DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
             WL   K     + +      +  NL  I  +        +    E +  TG L ++TGL
Sbjct: 326  GWLVSIKIAFDKKAQKTNVSMNTDNLMRIFTM-----GIDLTKPFEYLFATGNLRSKTGL 380

Query: 398  DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDG 457
             L Q +G  V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGFLCPVHTPDG
Sbjct: 381  GLLQNSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFLCPVHTPDG 440

Query: 458  EPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVL 517
            EPCGL+NH+T+ C V + +              SI  +L  +G+ P     V   P    
Sbjct: 441  EPCGLMNHLTAVCEVVTQF----------VYTASIPALLCNLGVTP-----VDGAPHRPY 485

Query: 518  S----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGA-YPGL 572
            S    VLLDG +VG +       +   LR  KV     IP  +EV  +P++   + YPGL
Sbjct: 486  SECYPVLLDGVMVGWVDKELAPGIADSLRHFKVLREKRIPPWMEVVLIPMTGKPSLYPGL 545

Query: 573  YLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEI 632
            +LFT+P + VRPV+N+ L  EE     LIG  EQ+FM +   +        A   TH+E+
Sbjct: 546  FLFTTPCRLVRPVQNLELGKEE-----LIGTMEQIFMNVAIFED----EVFAGVTTHQEL 596

Query: 633  HPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPI 692
             P  +LSV+AN  P+SDHNQSPRNMYQCQM KQTMGF +   + R+D KLY LQTPQ+P+
Sbjct: 597  FPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPL 656

Query: 693  VRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDL 752
            VR + Y  Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG  HG +Y++E IDL
Sbjct: 657  VRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDL 716

Query: 753  SDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNS 812
            S+   + D       +  D + L   +D DGLP++G  +  G+PY S  +  T       
Sbjct: 717  SEKIKQGDSSLVFGIKPGDPRVLQK-LDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMY 775

Query: 813  RKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDI 871
             K  E+  VD + V   ++ +   K   I  R  RNP IGDKF+SRHGQKG+ S+LWP  
Sbjct: 776  YKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAE 835

Query: 872  DMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNG 931
            DMPF+  +GM PD++ NPH FPSRMTI ML+ES+A K  +LHG   DATPF  S      
Sbjct: 836  DMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFS------ 888

Query: 932  DTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSD 991
                 E  S ++  GEML+  G+N++G E LYSG+ G EL  +IFIG VYYQRLRHMVSD
Sbjct: 889  -----EENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSD 943

Query: 992  KFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVAD 1051
            KFQVR+TG  D++T QPI GR   GGIRFGEMERD+LLAHG ++LLHDRL  CSD  VA 
Sbjct: 944  KFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAH 1003

Query: 1052 VCSLCGSVLTATFIHPQKRAIREIGGLPPARAP---KKVTCHACQTSKGMETVAMPYVFR 1108
            VC  CGS+L+     P           PP+ +    +K  C  C  S  ++TV++PYVFR
Sbjct: 1004 VCVKCGSLLSPLLEKP-----------PPSWSAMRNRKYNCTLCNRSDTIDTVSVPYVFR 1052

Query: 1109 YLAAELAAMNIKITLQL 1125
            Y  AELAAMNIK+ L +
Sbjct: 1053 YFVAELAAMNIKVKLDV 1069


>gi|75062001|sp|Q5REE8.1|RPA2_PONAB RecName: Full=DNA-directed RNA polymerase I subunit RPA2; Short=RNA
            polymerase I subunit 2; AltName: Full=RPA135
 gi|55726171|emb|CAH89859.1| hypothetical protein [Pongo abelii]
          Length = 1136

 Score =  887 bits (2293), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/1162 (42%), Positives = 672/1162 (57%), Gaps = 109/1162 (9%)

Query: 12   LRELVRHHIESFDYMLDEGLS--------------------EMFD--------------- 36
            L+EL R H+ESF+Y + EGL                      + D               
Sbjct: 35   LQELTRAHVESFNYAVHEGLGLAVQAIPPFEFAFKDERISFTILDAVISPPTVPKGTICK 94

Query: 37   -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
                    CR  + +Y GKL AD+ +        ++++    G  P+M+K++ C+L    
Sbjct: 95   EVSVYPAECRGRRCTYRGKLTADISWAVNGISKGIIKQFL--GYVPIMVKSKLCNLYNLP 152

Query: 90   SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
             Q L+   EEA EMGGYFI+NG+E+V R +I+P++N+P++MVR  ++ R  GYT   V +
Sbjct: 153  PQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMVRPKWKTRGPGYTHYGVSM 212

Query: 150  RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
             CVR++ S+V + L+YL NG+V L F  + + + LP+G  LKALV  +D +IF  L    
Sbjct: 213  HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269

Query: 210  DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
                 KE  +     VS+ ++I++ E      +T+ Q L ++GE F+  ++         
Sbjct: 270  ---KGKEDDSFLRNSVSQMLRIVMEE----GCSTQKQVLNYLGECFRVKLNVPDWYPNEQ 322

Query: 270  VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
             AE +    I +HL  N +KF +L  M +KLF+L     + DNPDSL NQE+L PG L  
Sbjct: 323  AAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFL 382

Query: 330  IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
            ++LKEKLE WL   K     + +      +  NL  I  +        +    E +  TG
Sbjct: 383  MFLKEKLEGWLVSIKIAFDKKAQKTNVSMNTDNLMRIFTM-----GIDLTKPFEYLFATG 437

Query: 390  RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
             L ++TGL L Q +G  V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGFL
Sbjct: 438  NLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFL 497

Query: 450  CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
            CPVHTPDGEPCGL+NH+T+ C V + +    +I          L   +GV  I   P   
Sbjct: 498  CPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASI--------PALLCNLGVTPIDGAPHRS 549

Query: 510  KSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS-LGGA 568
             S       VLLDG +VG +       +   LR  KV     IP   EV  +P++     
Sbjct: 550  YS---ECYPVLLDGVMVGWVDKELAPGIADSLRHFKVLREKRIPPWTEVVLIPMTGKPSL 606

Query: 569  YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPAT 628
            YPGL+LFT+P + VRPV+N+ L  EE     LIG  EQ+FM +   +        A   T
Sbjct: 607  YPGLFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQIFMNVAIFED----EVFAGVTT 657

Query: 629  HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTP 688
            H+E+ P  +LSV+AN  P+SDHNQSPRNMYQCQM KQTMGF +   + R+D KLY LQTP
Sbjct: 658  HQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTP 717

Query: 689  QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
            Q+P+VR + Y  Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG  HG +Y++E
Sbjct: 718  QSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSE 777

Query: 749  TIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSW 808
             IDLS+   + D       +  D + L   +D DGLP++G  +  G+PY S  +  T   
Sbjct: 778  FIDLSEKIKQGDSSLVFGMKPGDPRILQK-LDDDGLPFIGAKLQYGDPYYSYLNLNTGES 836

Query: 809  RTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQL 867
                 K  E+  VD + V   ++ +   K   I  R  RNP IGDKF+SRHGQKG+ S+L
Sbjct: 837  FVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRL 896

Query: 868  WPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVK 927
            WP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+A K  +LHG   DATPF  S  
Sbjct: 897  WPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFS-- 953

Query: 928  KTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRH 987
                     E  S ++  GEML+  G+N++G E LYSG+ G EL  +IFIG VYYQRLRH
Sbjct: 954  ---------EENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRH 1004

Query: 988  MVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAA-YLLHDRLHTCSD 1046
            MVSDKFQVR+TG  D++T QPI GR   GGIRFGEMERD+LLAHG + +LLHDRL  CSD
Sbjct: 1005 MVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFFLLHDRLFNCSD 1064

Query: 1047 YHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP---KKVTCHACQTSKGMETVAM 1103
              VA VC  CGS+L+     P           PP+ +    +K  C  C  S  ++TV++
Sbjct: 1065 RSVAHVCVKCGSLLSPLLEKP-----------PPSWSAMRNRKYNCTLCNRSDTIDTVSV 1113

Query: 1104 PYVFRYLAAELAAMNIKITLQL 1125
            PYVFRY  AELAAMNIK+ L +
Sbjct: 1114 PYVFRYFVAELAAMNIKVKLDV 1135


>gi|398396774|ref|XP_003851845.1| DNA-directed RNA polymerase I subunit RPA135 [Zymoseptoria tritici
            IPO323]
 gi|339471725|gb|EGP86821.1| hypothetical protein MYCGRDRAFT_73125 [Zymoseptoria tritici IPO323]
          Length = 1213

 Score =  887 bits (2293), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1158 (43%), Positives = 695/1158 (60%), Gaps = 115/1158 (9%)

Query: 29   EGLSEMFD-HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQG 87
            EG  E+    CR+  ++Y G+      F++   G        +FG  PVML++ RCHL+G
Sbjct: 110  EGRREILPVECRERHVTYRGRFRG--RFEHRVNGGEWKETVRDFGNLPVMLRSNRCHLEG 167

Query: 88   ADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAV 147
               + LV+ +EE  E+GGYFI+NG+E++ R +I+ ++NYPM+++R SF  R   YT   +
Sbjct: 168  LSPRDLVNKREETEELGGYFIVNGIEKLVRMLIVNRRNYPMAIIRPSFEGRGATYTKYGI 227

Query: 148  VIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTC 207
             IR VR DQ+S T  L+YL +G+V   F  +  E+L+PV +VLKAL +TND EIF  +  
Sbjct: 228  QIRSVRPDQTSQTNVLHYLSDGNVTFRFSWRKNEFLVPVLMVLKALTETNDREIFEGIVG 287

Query: 208  CYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESY 267
                     KG      V++RV+++L   +  +L  R +   ++G  F+ V+   +  S 
Sbjct: 288  P-----ASSKGLDSKQFVTDRVELLLRTYKAYNLHGRSKTRAYLGSKFRVVLGVPEDLSD 342

Query: 268  YAVAETVIRDYIFVHLN-------DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQE 320
             A     +R  +  HL        +++DKF +LIFM++KL+SLV+     DNPD++QNQE
Sbjct: 343  EAAGTEFLRKIVMPHLGSYEVTEANDSDKFRMLIFMIRKLYSLVEGECTIDNPDAVQNQE 402

Query: 321  ILLPGHLITIYLKEKLEDWLRK-GKKLIQDEIENNGKKFDF--FNLANIKKVMEKNPSKQ 377
            ILLPG L  + +KE++E+WL   G  L +    NN   F+   F+   + K++ K  ++ 
Sbjct: 403  ILLPGALYGMIIKERIEEWLTSIGLSLREWGRSNNWPSFNSRDFDKDFMPKIIRKT-NEN 461

Query: 378  IGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS 437
            +G +++  L TG L + TGLDLQQ +G+TV AE++NF RFI+ FR VHRG+ FA L+TT+
Sbjct: 462  LGQALDYFLSTGNLVSPTGLDLQQVSGFTVVAEKINFFRFIAHFRMVHRGSFFAQLKTTT 521

Query: 438  VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVAS-YYDSRGNIRDFSKMRTSILRVL 496
            VRKLLPESWGFLCPVHTPDG PCGLLNH+   C++A+   D+ G     S+M        
Sbjct: 522  VRKLLPESWGFLCPVHTPDGSPCGLLNHLAHKCKIATESIDASGVPGLISQM-------- 573

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDL 556
             GV  + S   L  S     +S+ LDGR++G     + + +   LR  KV     +P +L
Sbjct: 574  -GVASV-SDATLEDS-----VSIQLDGRILGFCSPKQAKLIADTLRYWKVEGNQGVPTEL 626

Query: 557  EVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPD- 615
            E+GYVPLS+GG YPG+Y+F+   +  RPV+ + L     + ++ +GPFEQ FM I C + 
Sbjct: 627  EIGYVPLSIGGQYPGVYMFSQAARMYRPVKYLPL-----EKLDYVGPFEQPFMSIACTEP 681

Query: 616  ---GGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQ 672
                GD        +TH E   T +LS++AN TP+S+ NQSPRNMYQCQM KQTMG    
Sbjct: 682  EVTSGD--------STHVEFDVTNILSIIANQTPFSNQNQSPRNMYQCQMGKQTMGTPGT 733

Query: 673  ALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNK 732
            ALK+R D K Y LQT QTP+VRT  + +YG+D +P GTNA+VAV++YTGYDM+DAMI+NK
Sbjct: 734  ALKYRTDNKSYRLQTGQTPVVRTPKHNEYGLDNFPNGTNAVVAVISYTGYDMDDAMIINK 793

Query: 733  SSVDRGMCHGQIYQTETIDLSDDGNKVDRGQK------LFRRNKDA---KSLHSVIDSDG 783
            S+ +RG  +G IY+ + IDL+ + +K  RG +      +F     A    S    +D DG
Sbjct: 794  SAHERGFGYGTIYKAKKIDLAAE-SKATRGGRGGAITNMFGFAPGAVVKSSWRETLDDDG 852

Query: 784  LPYVGQMIHPGEPYCSIY----DKTTNSW-------RTNSRKGSESVFVDYVAV--DMKN 830
            L  VG  +  G+P  S Y    D  T  +         +  K +E+ +++ + +  +   
Sbjct: 853  LGRVGVKLQEGDPVASTYSVVKDPLTGEYVNKDGISHIHRYKDTEAGYIEEIKMIGNEAG 912

Query: 831  SKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPH 890
            + +  Q  +IR+R  R+P+IGDKFSSRHGQKGVCSQ WP IDMPF+  +GM+PD+IINPH
Sbjct: 913  TSDPCQAISIRYRIPRSPVIGDKFSSRHGQKGVCSQKWPTIDMPFT-ESGMQPDVIINPH 971

Query: 891  AFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLR 950
            AFPSRMTI M +ES+A K G+LHG   D TPF    K         E ++ V+  G  L+
Sbjct: 972  AFPSRMTIGMFVESLAGKSGALHGLAQDCTPFKFKDK---------EGETAVEYFGHQLK 1022

Query: 951  TCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIK 1010
              G+NY+G E +YSG+ G EL  +I+IG VYYQRLRHMV+DKFQVR+TG +  +T QPIK
Sbjct: 1023 RAGYNYYGNEPMYSGITGEELAADIYIGVVYYQRLRHMVNDKFQVRTTGPVTPLTGQPIK 1082

Query: 1011 GRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKR 1070
            GR +GGGIR GEMERD+LLAHG A+LL DRL  CSDY  A +C  CGS L+      Q  
Sbjct: 1083 GRAKGGGIRVGEMERDALLAHGTAFLLQDRLMNCSDYTKASICKACGSFLSTQPSVNQSF 1142

Query: 1071 AIREIGGLPPARAPKKVTCHAC--------------QTSKG--------METVAMPYVFR 1108
            A R  GG        +V C  C              +  KG        + TVA+P V +
Sbjct: 1143 ARRREGG--------RVRCRRCSRQASTKDPKSLCWEDKKGKKWVGGDEVTTVAVPGVLK 1194

Query: 1109 YLAAELAAMNIKITLQLG 1126
            YL  ELAAM I++  Q+G
Sbjct: 1195 YLDVELAAMGIRMKFQVG 1212


>gi|345328017|ref|XP_001515678.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA2
            [Ornithorhynchus anatinus]
          Length = 1262

 Score =  887 bits (2292), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/1186 (41%), Positives = 681/1186 (57%), Gaps = 142/1186 (11%)

Query: 2    ARKKSADFEPLRELVRHHIESFDYMLDEGLSEMFD------------------------- 36
            AR+ +A    L+EL R H+ SFD+ + EGLS+                            
Sbjct: 156  ARQAAA----LQELSRAHVRSFDHAVREGLSQAVQAILPFEFAFRDERITLAIVDAVISP 211

Query: 37   -----------------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLK 79
                              CR  + +Y GKL AD+ +        ++++  + G  P+M+K
Sbjct: 212  PMVPKGSICKELKVFPAECRGRRSTYRGKLTADISWAVNGIPKGIIKQ--SLGYVPIMVK 269

Query: 80   TRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRR 139
            ++ C+L     + L+   EE  EMGGYFI+NG+E++ R +I+P++N+P++++R  ++ R 
Sbjct: 270  SKLCNLYDLPPKALIEHHEEPEEMGGYFIVNGIEKIIRMLIMPRRNFPIALIRPKWKSRG 329

Query: 140  EGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDL 199
             GYT   V + CVR + +++ + L+YL NG+V + F  Q + + LP+G  LKALV  +D 
Sbjct: 330  PGYTHFGVSMHCVRDEHTAINMNLHYLENGTVMVNFIYQKELFFLPLGFALKALVGFSDH 389

Query: 200  EIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVI 259
            +IF  L         +E  +     VS+ +++++ E      TT+ Q L ++GE F+  +
Sbjct: 390  QIFQELI------KGREDNSFYKNCVSQMLRMVMEE----GCTTQKQVLNYLGERFRIKL 439

Query: 260  DGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQ 319
            +  +       AE ++   I +HL  N +KF +L  M +KLF+      + ++ DSL NQ
Sbjct: 440  NLPEWYRNEQAAEFLLNQCICIHLKSNTEKFYMLCLMTRKLFAFAKGECMEESSDSLMNQ 499

Query: 320  EILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDF-FNLANIKKVMEKNPSKQI 378
            E+L PG L  ++LKEKLE WL      ++   +   +K +   N  N+ KV        +
Sbjct: 500  EVLTPGQLFLMFLKEKLEAWLVS----VKIAFDKRAQKTNISLNSENLMKVFSM--GLDL 553

Query: 379  GTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSV 438
                E +L TG L ++TGL + Q  G  V A++LNF+R++S FR VHRGA+FA +RTTSV
Sbjct: 554  TRPFEYLLATGSLRSKTGLGMLQDVGLCVVADKLNFIRYLSHFRCVHRGAAFAKMRTTSV 613

Query: 439  RKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIG 498
            R+LLPESWGFLCPVHTPDGEPCGL+NHMT+ C + +                        
Sbjct: 614  RRLLPESWGFLCPVHTPDGEPCGLMNHMTAVCEIVTQ----------------------- 650

Query: 499  VGMIPSLPKLVKS-------GPPA-----VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKV 546
            V   P+LP L+ S       G P+        V+LDG V+G +       +   LR  KV
Sbjct: 651  VAYTPTLPALLCSLGITPVDGAPSQPYRDCYPVVLDGVVMGWVEKDLAPGIADSLRNFKV 710

Query: 547  SAASVIPDDLEVGYVPLSLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFE 605
                 IP  +EV  +P++   + YPGL+LFT+P + +RPVRN+ L  EE      IG  E
Sbjct: 711  LGEKKIPPWMEVVLIPMTGKPSLYPGLFLFTTPCRMIRPVRNLDLGKEE-----FIGTLE 765

Query: 606  QVFMEIRCPDGGDGGRRNAFPA--THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMA 663
            Q FM I   +          P   TH+E+ P  MLSVVAN  P+SDHNQSPRNMYQCQM 
Sbjct: 766  QTFMNIAIFED------EIVPGITTHQELFPHSMLSVVANFIPFSDHNQSPRNMYQCQMG 819

Query: 664  KQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYD 723
            KQTMGF +   + R+D KLY L +PQ+P+VR   Y  Y +D YP GTNA+VAV++YTGYD
Sbjct: 820  KQTMGFPLNTYRERSDNKLYRLHSPQSPLVRPYMYDYYEMDNYPIGTNAVVAVISYTGYD 879

Query: 724  MEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDG 783
            MEDAMI+NKSS +RG  HG +Y+TE +DLSD   + D       +  D++  H  +D DG
Sbjct: 880  MEDAMIVNKSSWERGFAHGTVYKTERVDLSDKIKQGDDCLVFGVKPGDSRVAHK-LDDDG 938

Query: 784  LPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRF 842
            LPY+G ++  G+P+ S  +  T        K  E   VD + V   ++ N   K   I  
Sbjct: 939  LPYIGAVLQYGDPFYSYVNLNTGESFVTYYKSKEDCVVDNIKVCGNDTGNGKFKCICITM 998

Query: 843  RHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLL 902
            R  RNP IGDKF+SRHGQKG+ S+LWP  DMPF+  +GM PD++ NPH FPSRMTI ML+
Sbjct: 999  RIPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTE-SGMMPDILFNPHGFPSRMTIGMLI 1057

Query: 903  ESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVL 962
            ES+A K  +LHG   DATPF  S           E  S +D  G ML++ G+N++G E L
Sbjct: 1058 ESMAGKSAALHGVCHDATPFTFS-----------EENSALDYFGNMLKSAGYNFYGTEKL 1106

Query: 963  YSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGE 1022
            YSG+ G EL  +IFIG VYYQRLRHMVSDKFQVR+TG  D++T QP+ GR   GGIRFGE
Sbjct: 1107 YSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPVGGRNVQGGIRFGE 1166

Query: 1023 MERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPAR 1082
            MERD+LLAHG ++LLHDRL  CSD  VA VC  CGS+L+     P           PP+ 
Sbjct: 1167 MERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKP-----------PPSW 1215

Query: 1083 AP---KKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
            +    +K  C  C+ S  +ETV++PYVFRY  AELAAMNIK+TL +
Sbjct: 1216 SAMRNRKYNCTVCRQSDTIETVSVPYVFRYFVAELAAMNIKVTLDI 1261


>gi|410955304|ref|XP_003984296.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 3
            [Felis catus]
          Length = 1070

 Score =  886 bits (2290), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/1099 (44%), Positives = 660/1099 (60%), Gaps = 76/1099 (6%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
             CR  + +Y GKL AD+ +        V+++    G  P+M+K++ C+L     + L+  
Sbjct: 37   ECRGRRSTYRGKLTADISWAVNGISKGVIKQFL--GYVPIMVKSKLCNLYNLPPKALIEH 94

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
             EEA EMGGYFI+NG+E+V R +I+P++N+P++MVR  ++ R  GYT   V + CVR++ 
Sbjct: 95   HEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMVRPKWKTRGPGYTQYGVSMHCVREEH 154

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
            S+V + L+YL NG+V L F  + + + LP+G  LKALV+ +D +IF  L         KE
Sbjct: 155  SAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVNFSDYQIFQELI------KGKE 208

Query: 217  KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
            + +     +S+ ++I++ E      +T+ Q L ++GE F+  +           AE +  
Sbjct: 209  EDSFFRNSISQMLRIVMEE----GCSTQKQVLNYLGECFRVKLSLPDWYPNEQAAEFLFN 264

Query: 277  DYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
              I +HL  + +KF +L  M +KLF+L     + +NPDSL NQE+L PG L  ++LKEK+
Sbjct: 265  QCICIHLKSSTEKFYMLCLMTRKLFALAKGECMEENPDSLVNQEVLTPGQLFLMFLKEKM 324

Query: 337  EDWLRKGKKLIQDEIENNGKKFDF-FNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQT 395
            E WL      I+  ++   +K +   N  N+ K+        +    E +L TG L ++T
Sbjct: 325  EAWLVS----IKIALDKRAQKANVSINTENLMKIFSM--GTDLTKPFEYLLATGNLRSKT 378

Query: 396  GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTP 455
            GL   Q +G  V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGFLCPVHTP
Sbjct: 379  GLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFLCPVHTP 438

Query: 456  DGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPA 515
            DGEPCGL+NH+T+ C V + +              SI  +L  +G+ P     V   P  
Sbjct: 439  DGEPCGLMNHLTAVCEVVTQF----------VYTASIPALLCSLGVTP-----VDGAPHR 483

Query: 516  VLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS-LGGAYP 570
              S    VLLDG +VG +       V   LR  KV     IP  +EV  +P++     YP
Sbjct: 484  PYSECYPVLLDGVMVGWVDKDLAPGVADSLRHFKVLREKRIPPWMEVALIPMTGKPSLYP 543

Query: 571  GLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHE 630
            GL+LFT+P + VRPV+N+ L  EE     LIG  EQ+FM I   +        A   TH+
Sbjct: 544  GLFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQIFMNIAIFED----EVLAGVTTHQ 594

Query: 631  EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQT 690
            E+ P  +LSV+AN  P+SDHNQSPRNMYQCQM KQTMGF +   + R+D KLY LQTPQ+
Sbjct: 595  ELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQARSDNKLYRLQTPQS 654

Query: 691  PIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETI 750
            P+VR   Y  Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG  HG +Y++E I
Sbjct: 655  PLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFI 714

Query: 751  DLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRT 810
            DLS+   + D       +  D + L   +D DGLP++G  +  G+PY    +  T     
Sbjct: 715  DLSEKIKQGDDSLVFGVKPGDPRVLQK-LDDDGLPFIGAQLKYGDPYYGYLNLNTGENFV 773

Query: 811  NSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQLWP 869
               K  E+  VD + V   ++ +   K   I  R  RNP IGDKF+SRHGQKG+ S+LWP
Sbjct: 774  IYYKSKENCIVDNIKVCSNDTGSGKFKCICITMRVPRNPTIGDKFASRHGQKGILSRLWP 833

Query: 870  DIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKT 929
              DMPFS  +GM PD++ NPH FPSRMTI ML+ES+A K  +LHG   DATPF  S    
Sbjct: 834  AEDMPFSE-SGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFTFS---- 888

Query: 930  NGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMV 989
                   E  S ++  GEML+  G+N++G E LYSG+ G EL  +IFIG VYYQRLRHMV
Sbjct: 889  -------EENSALEYFGEMLKAAGYNFYGTERLYSGISGIELEADIFIGVVYYQRLRHMV 941

Query: 990  SDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHV 1049
            SDKFQVR+TG  D++T QPI GR   GGIRFGEMERD+LLAHG ++LLHDRL  CSD  V
Sbjct: 942  SDKFQVRTTGARDKVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSV 1001

Query: 1050 ADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP---KKVTCHACQTSKGMETVAMPYV 1106
            A VC  CGS+L+     P           PP+ +    +K  C  C  S  ++TV++PYV
Sbjct: 1002 AHVCVECGSLLSPLLEKP-----------PPSWSAMRNRKYNCTLCNRSDTIDTVSVPYV 1050

Query: 1107 FRYLAAELAAMNIKITLQL 1125
            FRY  AELAAMNIK+ L +
Sbjct: 1051 FRYFVAELAAMNIKVKLDV 1069


>gi|389746920|gb|EIM88099.1| DNA-directed RNA polymerase I polypeptide 2 [Stereum hirsutum
            FP-91666 SS1]
          Length = 1233

 Score =  886 bits (2290), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/1153 (42%), Positives = 682/1153 (59%), Gaps = 114/1153 (9%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
             R+   SY G++   + ++      P    R + G  P+M+++ RC+L+   S +LV   
Sbjct: 129  ARERLTSYRGRMTIKICWKLDSDPQPRTLTR-DCGLVPIMVRSVRCNLRSMSSAELVKHH 187

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EE  E GGYF++NG ER+ R +ILP++N+ +++ R SF  R   YT  AV IRCVR DQ+
Sbjct: 188  EEPEEFGGYFVINGNERLIRYLILPRRNHVVALSRPSFVGRGPSYTPYAVQIRCVRPDQT 247

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC-YDEKYKKE 216
            +VT  L+YL NGS    F  + +EY++P+ ++LKALV  +D+EIF  +    YD  +   
Sbjct: 248  AVTNTLHYLSNGSAMFRFSWRKQEYVIPIMLILKALVSASDMEIFEGVMMQDYDNTF--- 304

Query: 217  KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
                    +++RV+++L   +  SL T  QCL ++G+ F+ V+   +  +  A+   +I 
Sbjct: 305  --------LTDRVELLLRSFKMYSLYTGDQCLDYLGDKFRVVLGLPEDWNNQAIGAWIIH 356

Query: 277  DYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
              + VHL+D  +KF +L+FML+KL+S+V  +   DNPDS Q+QE+LLPG L  + +KEKL
Sbjct: 357  KLVLVHLDDVREKFRMLLFMLRKLYSIVSKSCCVDNPDSPQHQEVLLPGQLYGMIIKEKL 416

Query: 337  EDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
            ED L + +  +  ++       DF N   I K++ K  +  IG  +   L TG L + TG
Sbjct: 417  EDALNQIRTQVALDVRRGDSSVDFQNDRYITKIINKV-NFDIGAKMSNFLATGNLVSPTG 475

Query: 397  LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
            LDLQQ +G+T+ AE+LN+ R+IS FR +HRGA FA L+TT+VRKLLPE+WGFLCPVHTPD
Sbjct: 476  LDLQQASGFTIVAEKLNWHRYISHFRCIHRGAFFAELKTTTVRKLLPEAWGFLCPVHTPD 535

Query: 457  GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAV 516
            G PCGLLNH++ TCR+ +   +  ++            +LI  GM  +    V       
Sbjct: 536  GSPCGLLNHLSRTCRIVTAPLAVAHLPS----------LLIEHGMTQAFSTSVDGS--KN 583

Query: 517  LSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFT 576
            L V LDGRV+G       + +  +LR  K      +P DLE+G+VP S GG YPGL+LF+
Sbjct: 584  LCVQLDGRVIGWARPFVAKTLATNLRIWKTEGKHNVPLDLEIGFVPASEGGQYPGLFLFS 643

Query: 577  SPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEEIHPT 635
            S  + +RPV+   LP+     +   G FEQV+M+I   P+           ++H E  PT
Sbjct: 644  SRARMMRPVK--YLPNGRDDQV---GSFEQVYMDIAVTPE-----EIEPSVSSHVEHSPT 693

Query: 636  GMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRT 695
              LS++AN+TP+SD NQSPRN+YQCQM KQTMG    AL+ R D KLY LQ+ Q+P+VR 
Sbjct: 694  NFLSILANMTPFSDFNQSPRNIYQCQMGKQTMGTPATALRHRTDNKLYRLQSGQSPVVRP 753

Query: 696  NTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD 755
              +  YG+D +P GTNAIVAV++YTGYDMEDAMILNKS+ +RG  +G +Y+++ IDL + 
Sbjct: 754  ALHNTYGMDSFPNGTNAIVAVISYTGYDMEDAMILNKSAHERGFAYGTVYKSQIIDLKEQ 813

Query: 756  GNKVDR----------GQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTT 805
               +            G ++        S    +D DGLP +G  ++PG+P  +  D TT
Sbjct: 814  KGAIKATSAPTLHFGLGYEIKTEGDKKHSCVEFLDLDGLPNIGARLNPGDPIAAYTDDTT 873

Query: 806  NSWRTN--SRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQKG 862
               RT     KG E  +++ V +   ++ +   QK +I  R TR+P+IGDKFSSRHGQKG
Sbjct: 874  GG-RTKFVKYKGDEVAYIEEVRLLGSDAGDAELQKIHITLRITRSPVIGDKFSSRHGQKG 932

Query: 863  VCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPF 922
            VCSQ WP IDMPFS  +GM+PD+IINPHAFPSRMTI ML+ES+A K G++HG   DATPF
Sbjct: 933  VCSQKWPAIDMPFSE-SGMQPDVIINPHAFPSRMTIGMLVESMAGKAGAMHGLAQDATPF 991

Query: 923  ANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYY 982
              S           E  + +D  G+ L   G+NYHG E +YSG+ G E   +I+ G VYY
Sbjct: 992  TFS-----------EQDTAIDYFGKQLLAAGYNYHGSEPMYSGITGQEFAADIYFGVVYY 1040

Query: 983  QRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLH 1042
            QRLRHMV DKFQVR+TG +D +TRQP+KGRKR GGIRFGEMERD+L+AHG ++LL DRL 
Sbjct: 1041 QRLRHMVLDKFQVRTTGPVDPLTRQPVKGRKRAGGIRFGEMERDALIAHGTSFLLQDRLM 1100

Query: 1043 TCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGG------LPPARAPKKVTCHAC---- 1092
             CSDY  A VC  CGS++T  +   Q   I  +GG       P    P+   C  C    
Sbjct: 1101 NCSDYSTAWVCRTCGSLITLGYDDVQLGEI-VLGGPSSHSHAPKPSGPQGEYCRVCRAAA 1159

Query: 1093 ----------------------------------------QTSKGMETVAMPYVFRYLAA 1112
                                                         ++ VA+PYVFRYL A
Sbjct: 1160 EQEEERERKALVTGQNPERVGKNDVRVAIPSQHVLGSNGGGKGGDLDIVAVPYVFRYLCA 1219

Query: 1113 ELAAMNIKITLQL 1125
            ELA+M I ++L++
Sbjct: 1220 ELASMGIAVSLEV 1232


>gi|169769719|ref|XP_001819329.1| DNA-directed RNA polymerase I subunit RPA135 [Aspergillus oryzae
            RIB40]
 gi|238487962|ref|XP_002375219.1| DNA-directed RNA polymerase I subunit beta (Rpa2), putative
            [Aspergillus flavus NRRL3357]
 gi|83767188|dbj|BAE57327.1| unnamed protein product [Aspergillus oryzae RIB40]
 gi|220700098|gb|EED56437.1| DNA-directed RNA polymerase I subunit beta (Rpa2), putative
            [Aspergillus flavus NRRL3357]
          Length = 1237

 Score =  885 bits (2288), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/1163 (42%), Positives = 689/1163 (59%), Gaps = 130/1163 (11%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAG-SPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
            CR+   +Y GKL A +E++  +      VRE    GQ P+M++T RCHL+ A   +LV  
Sbjct: 128  CRERHATYRGKLRARIEYRVNNGDWMEAVRE---LGQVPIMMRTNRCHLEKATPAELVEH 184

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
            KEE+ E+GGYFI+NG E++ R +I+ K+N+PM++VR SF  R   YT   V IR VR DQ
Sbjct: 185  KEESEELGGYFIVNGNEKLIRMLIVGKRNFPMAIVRGSFVKRGHTYTKFGVQIRSVRPDQ 244

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
            +S T  L+YL +G+V   F  +  EYL+PV ++LKALV+TND EIF  L      +    
Sbjct: 245  TSQTNVLHYLSDGNVTFRFSWRKNEYLVPVMMILKALVETNDREIFEGLVGSASSE---- 300

Query: 217  KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
               + +  V++RV+++L   +  +L +R  C  ++GE F+PV+      S        +R
Sbjct: 301  --GINNTFVTDRVELLLRTYKGYNLHSRSACRAYLGEKFKPVLGVPMDMSNEEAGTEFLR 358

Query: 277  DYIFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
              +  HL + N       DKF L++FM++KL++LV      DNPD++ NQEILL G L  
Sbjct: 359  KVVLPHLGNQNVTETQDYDKFKLIMFMIRKLYALVAGDCAPDNPDAVSNQEILLGGFLYG 418

Query: 330  IYLKEKLEDWLRKGKKLIQD-EIENNGKKFD--FFNLANIKKVMEKNPSKQIGTSIETML 386
            + LKE+LE+W+R    +++D  + N+G KF    F    + KV++++ ++ IG ++E  L
Sbjct: 419  MILKERLEEWVRSFGPILRDWSMRNHGAKFTDPSFERDFLSKVVKRS-NENIGGALEYFL 477

Query: 387  KTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESW 446
             TG L + TGLDLQQ +GYTV AE++NF RFIS FR +HRG+ FA L+TT+VRKLLPESW
Sbjct: 478  STGNLVSPTGLDLQQTSGYTVMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPESW 537

Query: 447  GFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL-RVLIGVGMIPSL 505
            GFLCPVHTPDG PCGLLNH+   C +++           S +  S L R+L+ +G    +
Sbjct: 538  GFLCPVHTPDGSPCGLLNHLAHKCLIST-----------SDIDVSHLPRLLVQLG----V 582

Query: 506  PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
                       ++V LDGR+VG     +   +   LR  KV  +  +P +LE+GYVP S 
Sbjct: 583  RSESSVSLEESVTVQLDGRIVGFCSPKQARMIADTLRHWKVEGSHNVPRELEIGYVPNSN 642

Query: 566  GGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNA 624
            GG YPG+Y+F+   +  R V+ + L       ++ +GPFEQ FMEI C P     G    
Sbjct: 643  GGQYPGIYMFSQAARMYREVKYLPL-----DKLDYVGPFEQPFMEIACLPSDLVAG---- 693

Query: 625  FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
              +TH E  PT +LS+VAN+TP+SD+NQSPRNMYQCQM+KQTMG    A+ +R D KLY 
Sbjct: 694  -ISTHIEFTPTNILSIVANMTPFSDYNQSPRNMYQCQMSKQTMGTPGTAIDYRTDNKLYR 752

Query: 685  LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI 744
            LQT QTPIVR   Y  YG+D +P GTNA+VA+++YTGYDM+DAMI+NKSS +RG  HG I
Sbjct: 753  LQTGQTPIVRPPLYNAYGLDNFPNGTNAVVAIISYTGYDMDDAMIINKSSHERGFGHGTI 812

Query: 745  YQTETIDLSDDGNKVDRGQ----KLFRRNKDAK---SLHSVIDSDGLPYVGQMIHPGE-- 795
            Y+T+   L +  ++ ++ +    KLF      +      + ID DGLP++G  +  G   
Sbjct: 813  YKTKVHSLDEKESRRNKSRREITKLFGFAPGGEIRAEWRNTIDEDGLPHIGARVKEGSLV 872

Query: 796  -PYCSI-YDKTTNSW-------RTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHT 845
              Y ++ YD  ++S+            K +E  ++D + +    +   P Q  ++++R  
Sbjct: 873  AAYHNVRYDAASDSYVNVDGITHFVKYKDAEEGYIDSIRIMGAETGIEPCQSLSVKYRIP 932

Query: 846  RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
            R P+IGDKFSSRHGQKGVCSQLWP +DMPFS  +G++PDLIINPHAFPSRMTIA ++ES+
Sbjct: 933  RKPVIGDKFSSRHGQKGVCSQLWPAVDMPFS-ESGIQPDLIINPHAFPSRMTIAQMIESM 991

Query: 906  AAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSG 965
            A K G+LHG   D+TPF  S           E  +  D  G  LR  G+NY+G E LYSG
Sbjct: 992  AGKAGALHGHPQDSTPFQFS-----------EENTAADYFGHQLRKAGYNYYGNEPLYSG 1040

Query: 966  VYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMER 1025
            + G E   +IFIG V+YQRLRHMV+DKFQVR+TG ++ +T QP+KGR +GGGIR GEMER
Sbjct: 1041 ITGKEFAADIFIGVVHYQRLRHMVNDKFQVRTTGPVNSLTGQPVKGRAKGGGIRVGEMER 1100

Query: 1026 DSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPAR--- 1082
            DSL+AHGAA++L DRL  CSD   A +C  CGS L+          +   GG   AR   
Sbjct: 1101 DSLIAHGAAFILQDRLMNCSDTQRAWLCRDCGSFLSTQ--------VALAGGSGKARNQG 1152

Query: 1083 ------------------APKKVTCHACQTSK----------------------GMETVA 1102
                              +   V C  C                           +  VA
Sbjct: 1153 AAAAAAKAASSQLTQASGSSGIVRCRRCAREAVFDDSRAITWEDGDGRRYVGGDNVTVVA 1212

Query: 1103 MPYVFRYLAAELAAMNIKITLQL 1125
            +P V RYL  ELAAM I++  ++
Sbjct: 1213 VPGVLRYLDVELAAMGIRMKFKV 1235


>gi|322694313|gb|EFY86146.1| DNA-directed RNA polymerase I 135 kDa polypeptide [Metarhizium
            acridum CQMa 102]
          Length = 1231

 Score =  885 bits (2287), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/1155 (42%), Positives = 693/1155 (60%), Gaps = 124/1155 (10%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPV--VRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
            CR+  +SY G+L A  E+  ++ G P+  VRE    GQ P+M+K+ RCHL+     +LV 
Sbjct: 118  CRERHVSYRGRLSATFEYS-INGGDPIEFVRE---LGQVPIMIKSNRCHLENNSPAQLVE 173

Query: 96   LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
             KEE+ E+GGYFI+NG+E++ R + + K+N+PM++ R SF++R  GYT   +++R VR D
Sbjct: 174  RKEESEELGGYFIVNGIEKIIRLLQVNKRNFPMAINRPSFQNRGAGYTSYGIIVRSVRPD 233

Query: 156  QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
            ++S T  L+YL +G++   F  +  EYL+PV ++LKALV+TND EIF  L      K   
Sbjct: 234  ETSQTNVLHYLNDGNITFRFSWRKNEYLIPVIMILKALVETNDREIFEGLIGPMGSK--- 290

Query: 216  EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
               A  +  +++RV+++L   +   L ++ Q   ++GE F+ V+   ++ S Y V    +
Sbjct: 291  ---ATENTFLTDRVELLLRTYKRYGLYSKSQTRAYLGEKFRVVLGVPETMSDYEVGTEFL 347

Query: 276  RDYIFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
            R  + VHL + N       DKF +L+FM++KL++L       DNPD+LQNQEILL G L 
Sbjct: 348  RRIVLVHLGNVNVAEEQDLDKFRMLLFMVRKLYALAAGECAVDNPDALQNQEILLGGFLY 407

Query: 329  TIYLKEKLEDWLRKG-KKLIQDEIENNGKKFDFFNLANIKK----VMEKNPSKQIGTSIE 383
            +  LKE+L++++  G +  ++D +  + +    F   + +K     + +  ++ +G ++E
Sbjct: 408  SQILKERLDEFVSVGVRSSLRDFLRRHPQVS--FTSEDFRKEFPGTIFRKANENLGNALE 465

Query: 384  TMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLP 443
              L TG L + +GLDLQQ AG+TV AE+LNFLRFIS FR VHRGA FA L+TT+VRKLLP
Sbjct: 466  YFLSTGNLQSPSGLDLQQTAGFTVVAEKLNFLRFISHFRMVHRGAFFAQLKTTAVRKLLP 525

Query: 444  ESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP 503
            ESWGF+CPVHTPDG PCGLLNH+   C++ + +       D SK+  ++ R L   G++ 
Sbjct: 526  ESWGFMCPVHTPDGSPCGLLNHLAHKCKIVTDH------VDVSKL-PALAREL---GVVD 575

Query: 504  SLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL 563
            +   L        + V++DG+++G     E  ++   LR  KV     +P  LE+GYVP 
Sbjct: 576  TSSALTSEN----VVVMMDGKILGWCSPKESLRIADCLRYWKVEGTHGVPLQLEIGYVPA 631

Query: 564  SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRR 622
            S GG+YPG+Y+ ++P + VRPV+ + L  E+      +GP+EQ +M I   P   + G  
Sbjct: 632  SNGGSYPGVYITSTPARMVRPVKYLPLQKED-----FVGPYEQPYMSIAVVPQETESGV- 685

Query: 623  NAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKL 682
                +TH E  PT MLS++AN+TP+SD NQSPRNMYQCQM KQTMG    A+++R D K 
Sbjct: 686  ----STHVEFDPTNMLSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPGTAIRYRTDNKS 741

Query: 683  YHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG 742
            Y +QT QTPIVR   +  YG D +P G NA+VAV++YTGYDM+DAMILNKS+ +RG  HG
Sbjct: 742  YRIQTGQTPIVRAPLHNDYGFDNFPNGMNAVVAVISYTGYDMDDAMILNKSAHERGFGHG 801

Query: 743  QIYQTETIDLSDD-----GNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPY 797
             IY+T+ I L DD        V +       +  + S   ++D DGLP+VG+++  G+  
Sbjct: 802  TIYKTKKITLKDDSRTRAAKSVTKAFGFAPHSYVSASYQGMLDDDGLPHVGRLVQEGDVI 861

Query: 798  CSIYDKTTNSWRTN-----------SRKGSESVFVDYV-AVDMKNSKNLPQKANIRFRHT 845
            C+ +   T  +  N             K  E+ FV+ V  +  +      Q  +I+FR  
Sbjct: 862  CA-WHTVTPDYNGNLVNLDGITHYEKYKDGETGFVEEVRLIGAETGSETLQTVSIKFRIP 920

Query: 846  RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
            R+PIIGDKFSSRHGQKGV SQ WP IDMPFS  +G++PD+IINPHAFPSRMTI M +ES+
Sbjct: 921  RSPIIGDKFSSRHGQKGVASQKWPAIDMPFS-ESGIQPDVIINPHAFPSRMTIGMFVESL 979

Query: 906  AAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSG 965
            A K G+LHG   D+TPF             DE  + VD  G  L   G++YHG E +YSG
Sbjct: 980  AGKAGALHGLAQDSTPFK-----------FDEEDTAVDYFGHQLMKAGYSYHGNEPMYSG 1028

Query: 966  VYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMER 1025
            + G EL  +I+IG VYYQRLRHMV+DKFQVR+TG +   T QPIKGRKRGGGIR GEMER
Sbjct: 1029 ITGEELGADIYIGVVYYQRLRHMVNDKFQVRTTGPVVPTTGQPIKGRKRGGGIRVGEMER 1088

Query: 1026 DSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVL----TATFIHPQKRAIREIGGLPPA 1081
            D+LLAHG A+LL DRL  CSDY  + +C  CGS L    T +   P K+           
Sbjct: 1089 DALLAHGTAFLLQDRLLNCSDYTKSWICRRCGSFLSVQPTVSQFAPGKK----------- 1137

Query: 1082 RAPKKVTCHACQT----SKGME------------------------TVAMPYVFRYLAAE 1113
            RAP  V C  C T    + G++                         V +P   +YL  E
Sbjct: 1138 RAPTTVRCRNCATRLDETDGVDLTEIQGEIWEDGQGNRWVGGDHTTQVVVPGALKYLDVE 1197

Query: 1114 LAAMNIKITLQLGDG 1128
            LAAM +K+  ++  G
Sbjct: 1198 LAAMGVKLKYRVNRG 1212


>gi|367052829|ref|XP_003656793.1| hypothetical protein THITE_2121926 [Thielavia terrestris NRRL 8126]
 gi|347004058|gb|AEO70457.1| hypothetical protein THITE_2121926 [Thielavia terrestris NRRL 8126]
          Length = 1236

 Score =  885 bits (2287), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/1146 (42%), Positives = 683/1146 (59%), Gaps = 110/1146 (9%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
             CR+  ++Y GKL A  E++  D G P+   R   GQ P+M+K+ +CHL+      LV  
Sbjct: 118  ECRERHVTYRGKLTAVFEYRIND-GEPMEFSR-ELGQMPIMVKSNKCHLENNPPALLVQR 175

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
            KEE+ E+GGYFI+NG+E++ R +++ K+N+P+++ R SF +R   YT   +++R VR D+
Sbjct: 176  KEESEELGGYFIVNGIEKIIRLLLVNKRNFPLAITRPSFTNRGPSYTPYGIIVRSVRPDE 235

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
            +S T  L+YL +G+V   F  +  EYL+PV ++LKALV+TND EIF  L    + K    
Sbjct: 236  TSQTNVLHYLNDGNVTFRFSWRKNEYLVPVMMILKALVETNDREIFEGLVGPPNSK---- 291

Query: 217  KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
               + +  +++RV+++L   +   L T+ Q   ++GE F+ V+    + S Y V    +R
Sbjct: 292  --GIENTFLTDRVELLLRTYKTYGLYTKTQTRAYLGEKFRVVLGVPDTMSDYEVGTEFLR 349

Query: 277  DYIFVHL-------NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
              + VHL         + DKF +L+FM +KL++LV      DNPD++QNQEILL G L  
Sbjct: 350  KIVLVHLGCVDVTEEQDLDKFKMLLFMCRKLYALVAGDCAIDNPDAVQNQEILLGGFLYG 409

Query: 330  IYLKEKLEDWLRKGKKLIQDEIENNGKKFDF--------FNLANIKKVMEKNPSKQIGTS 381
            + LKEKL+++L    +    +   N     F        F +A  +K  E      IG +
Sbjct: 410  MILKEKLDEFLSVSVRGALRDYLRNHATVSFTSPTFQRDFPVAIFRKANE-----NIGNA 464

Query: 382  IETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKL 441
            +E  L TG L + +GLDLQQ +G+TV AE+LNFLRFIS FR VHRG+ FA L+TT+VR+L
Sbjct: 465  LEYFLSTGNLQSPSGLDLQQTSGFTVVAEKLNFLRFISHFRMVHRGSFFAQLKTTTVRRL 524

Query: 442  LPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSI-LRVLIGVG 500
            LPESWGFLCPVHTPDG PCGLLNH+   C++               M  S+ +  + GV 
Sbjct: 525  LPESWGFLCPVHTPDGAPCGLLNHLAHKCKI---------------MTDSLDVSAVPGVA 569

Query: 501  MIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGY 560
            M   +     +     + V+LDGR++G       + V   LRR KV     IP  LE+GY
Sbjct: 570  MELGVNDYSSAATSESVVVMLDGRIIGWCTPRAAKGVADSLRRWKVEGGHGIPVQLEIGY 629

Query: 561  VPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDG---- 616
            VP S GG+YPG+Y+ + P + VRPV+ ++L  E+      +GP EQ +M I C +     
Sbjct: 630  VPPSRGGSYPGIYMSSRPARMVRPVKYLALGKED-----FVGPHEQPYMSIACTEAEVIP 684

Query: 617  GDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKF 676
            GD        +TH E  PT +LS++AN+TP+SD NQSPRNMYQCQM KQTMG    AL++
Sbjct: 685  GD--------STHVEFDPTNILSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPGTALRY 736

Query: 677  RADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVD 736
            R D K Y LQT QTPIVR+  +  YG D +P GTNA+VAV++YTGYDM+DAMI+NKS+ +
Sbjct: 737  RTDNKTYRLQTGQTPIVRSPLHNTYGFDNFPNGTNAVVAVISYTGYDMDDAMIINKSAHE 796

Query: 737  RGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA------KSLHSVIDSDGLPYVGQM 790
            RG  HG IY+T+ I L DD  +    + + +    A       S   ++D DGLPYVG++
Sbjct: 797  RGFGHGTIYKTKKISLKDDDTRARSSKAIVKMFGFAPGSAVRASDREMLDEDGLPYVGRL 856

Query: 791  IHPGEPYCSIYDKTTN-SWRTNSRKG---------SESVFVDYVAVDMKNSKNLP-QKAN 839
            +  G+   + +  + + S +  +R G         SE  FV+ V V   ++ N P Q  +
Sbjct: 857  VRQGDILYAWHTVSADYSGQLINRDGITHWERYKDSEDAFVEEVRVIGSDTGNEPLQTVS 916

Query: 840  IRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIA 899
            I+ R  R+P+IGDKFSSRHGQKGVCSQ WP IDMPFS  +G++PD+IINPHAFPSRMTI 
Sbjct: 917  IKLRVPRSPVIGDKFSSRHGQKGVCSQKWPAIDMPFSE-SGIQPDVIINPHAFPSRMTIG 975

Query: 900  MLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGV 959
            M +ES+A K G+LHG   D+TPF             DE  +  D  G  L   GFNYHG 
Sbjct: 976  MFVESLAGKAGALHGLAQDSTPFK-----------FDEENTAADYFGHQLMKAGFNYHGN 1024

Query: 960  EVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIR 1019
            E +YSG+ G E  C+I+IG VYYQRLRHMV+DK+QVR+TG +   T QPIKGRK+GGGIR
Sbjct: 1025 EPMYSGITGEEFACDIYIGVVYYQRLRHMVNDKYQVRTTGPVVPTTGQPIKGRKKGGGIR 1084

Query: 1020 FGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTAT-FIHPQKRAIREIGGL 1078
             GEMERD+LLAHG A+LL DRL  CSDY  + +C  CGS L     + P     +++G +
Sbjct: 1085 VGEMERDALLAHGTAFLLQDRLLNCSDYSKSWICRSCGSFLAVQPTVSPFIGKRKQVGTV 1144

Query: 1079 PPARAPK-----------KVTCHACQTSKGME--------TVAMPYVFRYLAAELAAMNI 1119
                  K           K+     +  +G++         V +P   ++L AELAAM +
Sbjct: 1145 RCRNCAKRLDQVEDLDLMKLDGEIWEDGQGVQWIGGENTTMVVVPGALKFLDAELAAMGV 1204

Query: 1120 KITLQL 1125
            K+  ++
Sbjct: 1205 KLKYRV 1210


>gi|76253769|ref|NP_956812.2| DNA-directed RNA polymerase I subunit RPA2 [Danio rerio]
 gi|66911319|gb|AAH97040.1| Zgc:66298 [Danio rerio]
 gi|182890886|gb|AAI65683.1| Zgc:66298 protein [Danio rerio]
          Length = 1132

 Score =  885 bits (2286), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/1173 (41%), Positives = 688/1173 (58%), Gaps = 132/1173 (11%)

Query: 11   PLRELVRHHIESFDYMLDEGLSEMFD---------------------------------- 36
            P++ELV+ HIESFD  + +GL  + +                                  
Sbjct: 33   PVQELVKAHIESFDQAVTDGLCRVVEAIPPMEFLYKGDRISLSFVEAIIHTPSVSKGGIS 92

Query: 37   --------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGA 88
                     CR  + +Y  KL+ADV +        ++++  + GQ P+M+K++ C+L G 
Sbjct: 93   RDLRVFPAECRGRRCTYRAKLVADVSWSVNGVPKGIIKQ--SLGQMPIMVKSKLCNLHGL 150

Query: 89   DSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVV 148
              ++L+   EEA EMGGYFI+NG+E+V R +I+P++NYP+++ R  F+ R +GYT  A+ 
Sbjct: 151  SPKELLEHHEEAEEMGGYFIVNGIEKVIRLLIMPRRNYPIAVSRPKFKSRGQGYTQYAIS 210

Query: 149  IRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
            +RCV+++ +++ + L+YL NG+V + F  + + + LP+G  LKALVD +D +I+  L   
Sbjct: 211  MRCVKEEHTAINMNLHYLDNGTVMVNFIYRKELFFLPLGFALKALVDYSDYQIYQELI-- 268

Query: 209  YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYY 268
                  +E  +     VSE ++I++    D   TT+++ L ++GE F+  ++  +  ++ 
Sbjct: 269  ----KGREDNSFYKSCVSEMLRIVM----DQGCTTKIKVLNYLGERFRVKLNLPEWFTHE 320

Query: 269  AVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
              A  ++ + + +HL  + +KF +L  M +KLFS      + +NPDS    E+L PG L 
Sbjct: 321  QCAHFLLDECLCIHLKTDVEKFYMLCLMTRKLFSFAKQECMEENPDSPMFHEVLTPGQLY 380

Query: 329  TIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKT 388
             ++LKEK+E WL      ++  +E   ++       ++ K+   N    +  + E +L T
Sbjct: 381  LMFLKEKMEGWLVS----VKLALEKKPQRVGGLTPDSMTKLF--NMGTDLTKAFEYLLAT 434

Query: 389  GRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGF 448
            G L ++TGL + Q +G  V A++LNF+R++S FR VHRGA+FA +RTT+VRKLLPESWGF
Sbjct: 435  GNLMSKTGLGMLQNSGLCVVADKLNFIRYLSHFRCVHRGAAFAKMRTTTVRKLLPESWGF 494

Query: 449  LCPVHTPDGEPCGLLNHMTSTCR-VASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPK 507
            LCPVHTPDGEPCGL+NHMT+ C  VA  Y             TS L      G++ SL  
Sbjct: 495  LCPVHTPDGEPCGLMNHMTAHCEIVAPVYP------------TSTLP-----GLLCSLGV 537

Query: 508  LVKSGPPA-----VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVP 562
                G P         V+LDG ++G +       V+  LRR KV     +P   E+  VP
Sbjct: 538  NAADGNPGQAYSDCYPVILDGAMIGWVEKEVAPSVIESLRRFKVLGEKKVPPWTEIVLVP 597

Query: 563  LSLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEI-----RCPDG 616
             +   + YPGLYLFT+P + VR VRN+SL  +E     LIG FEQV++ +        DG
Sbjct: 598  QTGKASLYPGLYLFTTPCRMVRTVRNLSLGKQE-----LIGIFEQVYLNVGIFEKEIEDG 652

Query: 617  GDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKF 676
                       TH+E+ P  MLSVVA   P+SDHNQSPRNMYQCQM+KQTMGF + + ++
Sbjct: 653  ---------VTTHQELFPHSMLSVVAEFIPFSDHNQSPRNMYQCQMSKQTMGFPLHSYQY 703

Query: 677  RADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVD 736
            R+D KLY LQTPQ+P+VR   Y  Y +D YP GTNAIVAV++YTGYDMEDAMI+NKSS +
Sbjct: 704  RSDNKLYRLQTPQSPLVRPAMYDHYDVDNYPIGTNAIVAVISYTGYDMEDAMIVNKSSWE 763

Query: 737  RGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEP 796
            RG  HG +Y+TE IDLS+     D    +F        +   +D+DGLP++G ++  G+P
Sbjct: 764  RGFAHGSVYKTEIIDLSEKVKGDD--SIVFGVKPGDPKVMGKLDADGLPFIGSVLKYGDP 821

Query: 797  YCSIYDKTTNSWRTNSRKGSESVFVDYVAV-DMKNSKNLPQKANIRFRHTRNPIIGDKFS 855
            +       T        K  ES  VD + V   +      ++  +  R  RNP IGDKF+
Sbjct: 822  FYGYISLNTGQSHVYFYKYQESCVVDNIKVCSNETGTGRFKRICVTSRVPRNPTIGDKFA 881

Query: 856  SRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGK 915
            SRHGQKG+ S+LWP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+A K  SLHG 
Sbjct: 882  SRHGQKGILSRLWPAEDMPFTE-SGMSPDILFNPHGFPSRMTIGMLIESMAGKSASLHGL 940

Query: 916  FMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEI 975
              DATPF  S           E  S ++  GE+L+  G+NY+G E LYSG+ G EL  +I
Sbjct: 941  CHDATPFTFS-----------EENSALEHFGELLKAAGYNYYGTERLYSGLSGLELEADI 989

Query: 976  FIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAY 1035
            FIG VYYQRLRHMVSDKFQVR+TG  D++T QP+ GR   GGIRFGEMERD+LLAHG ++
Sbjct: 990  FIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPMGGRNVQGGIRFGEMERDALLAHGTSF 1049

Query: 1036 LLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPP---ARAPKKVTCHAC 1092
            LLHDRL  CSD  VA VC  CGS+L+     P           PP   A   +K  C  C
Sbjct: 1050 LLHDRLFNCSDRSVAQVCMDCGSLLSTLLEKP-----------PPNWSATRHRKTICLLC 1098

Query: 1093 QTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
              S  +ETV++PYVF+Y  AELAAMNIKI L +
Sbjct: 1099 NKSDSIETVSVPYVFKYFVAELAAMNIKIKLDV 1131


>gi|124504400|gb|AAI28811.1| Zgc:66298 [Danio rerio]
          Length = 1132

 Score =  885 bits (2286), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/1173 (41%), Positives = 688/1173 (58%), Gaps = 132/1173 (11%)

Query: 11   PLRELVRHHIESFDYMLDEGLSEMFD---------------------------------- 36
            P++ELV+ HIESFD  + +GL  + +                                  
Sbjct: 33   PVQELVKAHIESFDQAVTDGLCRVVEAIPPMEFLYKGDRISLSFVEAIIHTPSVSKGGIS 92

Query: 37   --------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGA 88
                     CR  + +Y  KL+ADV +        ++++  + GQ P+M+K++ C+L G 
Sbjct: 93   RDLRVFPAECRGRRCTYRAKLVADVSWSVNGVPKGIIKQ--SLGQMPIMVKSKLCNLHGL 150

Query: 89   DSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVV 148
              ++L+   EEA EMGGYFI+NG+E+V R +I+P++NYP+++ R  F+ R +GYT  A+ 
Sbjct: 151  SPKELLEHHEEAEEMGGYFIVNGIEKVIRLLIMPRRNYPIAVSRPKFKSRGQGYTQYAIS 210

Query: 149  IRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
            +RCV+++ +++ + L+YL NG+V + F  + + + LP+G  LKALVD +D +I+  L   
Sbjct: 211  MRCVKEEHTAINMNLHYLDNGTVMVNFIYRKELFFLPLGFALKALVDYSDYQIYQELI-- 268

Query: 209  YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYY 268
                  +E  +     VSE ++I++    D   TT+++ L ++GE F+  ++  +  ++ 
Sbjct: 269  ----KGREDNSFYKSCVSEMLRIVM----DQGCTTKIKVLNYLGERFRVKLNLPEWFTHE 320

Query: 269  AVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
              A  ++ + + +HL  + +KF +L  M +KLFS      + +NPDS    E+L PG L 
Sbjct: 321  QCAHFLLDECLCIHLKTDVEKFYMLCLMTRKLFSFAKQECMEENPDSPMFHEVLTPGQLY 380

Query: 329  TIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKT 388
             ++LKEK+E WL      ++  +E   ++       ++ K+   N    +  + E +L T
Sbjct: 381  LMFLKEKMEGWLVS----VKLALEKKPQRVGGLTPDSMTKLF--NMGTDLTKAFEYLLAT 434

Query: 389  GRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGF 448
            G L ++TGL + Q +G  V A++LNF+R++S FR VHRGA+FA +RTT+VRKLLPESWGF
Sbjct: 435  GNLMSKTGLGMLQNSGLCVVADKLNFIRYLSHFRCVHRGAAFAKMRTTTVRKLLPESWGF 494

Query: 449  LCPVHTPDGEPCGLLNHMTSTCR-VASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPK 507
            LCPVHTPDGEPCGL+NHMT+ C  VA  Y             TS L      G++ SL  
Sbjct: 495  LCPVHTPDGEPCGLMNHMTAHCEIVAPVYP------------TSTLP-----GLLCSLGV 537

Query: 508  LVKSGPPA-----VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVP 562
                G P         V+LDG ++G +       V+  LRR KV     +P   E+  VP
Sbjct: 538  NAADGNPGQAYSDCYPVILDGAMIGWVEKEVAPSVIESLRRFKVLGEKKVPPWTEIVLVP 597

Query: 563  LSLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEI-----RCPDG 616
             +   + YPGLYLFT+P + VR VRN+SL  +E     LIG FEQV++ +        DG
Sbjct: 598  QTGKASLYPGLYLFTTPCRMVRTVRNLSLGKQE-----LIGIFEQVYLNVGIFEKEIEDG 652

Query: 617  GDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKF 676
                       TH+E+ P  MLSVVA   P+SDHNQSPRNMYQCQM+KQTMGF + + ++
Sbjct: 653  ---------VTTHQELFPHSMLSVVAEFIPFSDHNQSPRNMYQCQMSKQTMGFPLHSYQY 703

Query: 677  RADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVD 736
            R+D KLY LQTPQ+P+VR   Y  Y +D YP GTNAIVAV++YTGYDMEDAMI+NKSS +
Sbjct: 704  RSDNKLYRLQTPQSPLVRPAMYDHYDVDNYPIGTNAIVAVISYTGYDMEDAMIVNKSSWE 763

Query: 737  RGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEP 796
            RG  HG +Y+TE IDLS+     D    +F        +   +D+DGLP++G ++  G+P
Sbjct: 764  RGFAHGSVYKTEIIDLSEKVKGDD--SIVFGVKPGDPKVMGKLDADGLPFIGSVLKYGDP 821

Query: 797  YCSIYDKTTNSWRTNSRKGSESVFVDYVAV-DMKNSKNLPQKANIRFRHTRNPIIGDKFS 855
            +       T        K  ES  VD + V   +      ++  +  R  RNP IGDKF+
Sbjct: 822  FYGYISLNTGQSHVYFYKYQESCVVDNIKVCSNETGTGRFKRICVTSRVPRNPTIGDKFA 881

Query: 856  SRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGK 915
            SRHGQKG+ S+LWP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+A K  SLHG 
Sbjct: 882  SRHGQKGILSRLWPAEDMPFTE-SGMSPDILFNPHGFPSRMTIGMLIESMAGKSASLHGL 940

Query: 916  FMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEI 975
              DATPF  S           E  S ++  GE+L+  G+NY+G E LYSG+ G EL  +I
Sbjct: 941  CHDATPFTFS-----------EENSALEHFGELLKAAGYNYYGTERLYSGLSGLELEADI 989

Query: 976  FIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAY 1035
            FIG VYYQRLRHMVSDKFQVR+TG  D++T QP+ GR   GGIRFGEMERD+LLAHG ++
Sbjct: 990  FIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPMGGRNVQGGIRFGEMERDALLAHGTSF 1049

Query: 1036 LLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPP---ARAPKKVTCHAC 1092
            LLHDRL  CSD  VA VC  CGS+L+     P           PP   A   +K  C  C
Sbjct: 1050 LLHDRLFNCSDRSVAQVCMDCGSLLSPLLEKP-----------PPNWSATRHRKTICLLC 1098

Query: 1093 QTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
              S  +ETV++PYVF+Y  AELAAMNIKI L +
Sbjct: 1099 NKSDSIETVSVPYVFKYFVAELAAMNIKIKLDV 1131


>gi|255948070|ref|XP_002564802.1| Pc22g07860 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211591819|emb|CAP98074.1| Pc22g07860 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1249

 Score =  884 bits (2283), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/1061 (44%), Positives = 667/1061 (62%), Gaps = 89/1061 (8%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPV--VRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
            CR+   +Y GKL A +E+Q ++ G  +  VRE    G  P+M++T RCHL+ A   +LV 
Sbjct: 128  CRERHATYRGKLRARLEYQ-VNNGDWMESVRE---LGNVPIMVRTNRCHLEKATPDELVR 183

Query: 96   LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
             KEE+ E+GG++I+NG E++ R +I+ K+NYPMS++R SF  R + YT   V IR VR D
Sbjct: 184  HKEESEELGGFYIVNGNEKLIRMLIVGKRNYPMSIIRGSFVKRGQTYTKFGVQIRSVRPD 243

Query: 156  QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
            Q+S T  L+YL +G+V   F  +  EYL+PV ++LKAL +TND EIF  +      K   
Sbjct: 244  QTSQTNVLHYLSDGNVTFRFSWRKNEYLIPVMMILKALAETNDREIFEAIVGAASSK--- 300

Query: 216  EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
                + +  V++RV+++L         ++  C  H+G+ F+PV+          V    +
Sbjct: 301  ---GMSNTFVTDRVELLLRTYHAYQKHSQYDCRSHLGKAFRPVLGVPADMPDEEVGTEFL 357

Query: 276  RDYIFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
            R  +  HL + N       DKF L+ FM++KL+S V      DNPD++ NQEILL G L 
Sbjct: 358  RKVVLPHLGNENVTESQDWDKFKLITFMIRKLYSTVAGDCAPDNPDAVSNQEILLGGFLY 417

Query: 329  TIYLKEKLEDWLRKGKKLIQD-EIENNGKKF--DFFNLANIKKVMEKNPSKQIGTSIETM 385
             + LKE++E+WLR    + +D  I NNG KF  + F    + K+++++ ++ IG ++E  
Sbjct: 418  GMILKERIEEWLRSFGPIARDWSIRNNGAKFTDEAFERDFLSKIVKRS-NENIGNALEYF 476

Query: 386  LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
            L TG L + TGLDLQQ +GYTV AE++NF RFIS FR +HRG+ FA L+TT+VRKLLPES
Sbjct: 477  LSTGNLVSPTGLDLQQTSGYTVIAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPES 536

Query: 446  WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
            WGFLCPVHTPDG PCGLLNH++  C +A+      +  D S +     R L+ +G     
Sbjct: 537  WGFLCPVHTPDGSPCGLLNHLSHKCLIAT------DNLDVSHLP----RTLVQLG----- 581

Query: 506  PKLVKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYV 561
               V+S     L     V LDGR++G     + +++   +R  KV   + IP +LEVGY+
Sbjct: 582  ---VRSESSVALDESVVVQLDGRIIGYCSPKQAQRIADTIRYWKVEGKNNIPRELEVGYI 638

Query: 562  PLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGR 621
            P S GG YPG+Y+F+   +  RPV+ ++L       ++ +GPFEQ FMEI C +      
Sbjct: 639  PNSSGGQYPGVYMFSQSARMYRPVKYLAL-----DKLDYVGPFEQPFMEIACVES----- 688

Query: 622  RNAFP--ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRAD 679
             +  P  +TH E  PT +LS+VAN+TP+SD+NQSPRNMYQCQM+KQTMG    ++  R D
Sbjct: 689  -DLIPGLSTHIEFTPTNILSIVANMTPFSDYNQSPRNMYQCQMSKQTMGTPGTSIAHRTD 747

Query: 680  QKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGM 739
             KLY +QT QTPIVR   Y  YG+D +P G NA+VA+++YTGYDM+DAMI+NKS+ +RG 
Sbjct: 748  NKLYRIQTGQTPIVRPPLYNAYGLDNFPNGMNAVVAIISYTGYDMDDAMIINKSAHERGF 807

Query: 740  CHGQIYQTETIDLSDDGNKVDRGQ----KLF---RRNKDAKSLHSVIDSDGLPYVGQMIH 792
             HG +Y+T+ + L+++ ++ ++ +    KLF     ++    + + ID DG+P++G  + 
Sbjct: 808  GHGTVYKTKVVTLAENDSRRNKSKREVTKLFGFAPGDEIKDQVRNTIDEDGMPHLGARVK 867

Query: 793  PGEPYCSI----YDKTTNSW-------RTNSRKGSESVFVDYVAVDMKNSKNLP-QKANI 840
             G+   +     +D  ++S+            K +E  +VD + +    S N P Q  +I
Sbjct: 868  EGDKIAAWHNVRFDPASDSYVNVDGVTHYMKYKDAEEGYVDSIRIMGSESGNEPAQSLSI 927

Query: 841  RFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAM 900
            ++R  R P+IGDKFSSRHGQKGV SQLWP +DMPFS  +GM+PDLIINPHAFPSRMTIA 
Sbjct: 928  KYRIPRKPVIGDKFSSRHGQKGVLSQLWPAVDMPFSE-SGMQPDLIINPHAFPSRMTIAQ 986

Query: 901  LLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVE 960
            ++ES+A K G++HG   D+TPF  S           E  +  D  GE LR  G+NY+G E
Sbjct: 987  MIESMAGKAGAMHGLPQDSTPFQFS-----------EENTATDYFGEQLRKAGYNYYGNE 1035

Query: 961  VLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRF 1020
             LYSGV G E + +I++G VYYQRLRHMV+DKFQVR+TG ++ +T QP+KGR +GGGIR 
Sbjct: 1036 PLYSGVTGREFSADIYMGLVYYQRLRHMVNDKFQVRTTGPVNALTGQPVKGRAKGGGIRV 1095

Query: 1021 GEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLT 1061
            GEMERDSL+AHGAA+LL DRL  CSD     +C  CGS L+
Sbjct: 1096 GEMERDSLIAHGAAFLLQDRLMNCSDAQHTWICRCCGSFLS 1136


>gi|393235983|gb|EJD43534.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Auricularia delicata TFB-10046 SS5]
          Length = 1221

 Score =  883 bits (2282), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1150 (42%), Positives = 680/1150 (59%), Gaps = 117/1150 (10%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
             R+   SY G++ A + + +      VV    + G  PVM+++ RCHL+ A S +LV   
Sbjct: 126  ARERLTSYRGRMTAKLTWSFNGGPEHVVTR--DCGLVPVMVRSVRCHLRNASSAELVRHH 183

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRK-DQ 156
            EEA E GGYFI+NG ER+ R +ILP++N+ +S++R SF +R   YT+ AV IRCVRK DQ
Sbjct: 184  EEAEEFGGYFIINGNERIVRYLILPRRNHVISLIRPSFTNRGASYTEYAVQIRCVRKGDQ 243

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC-YDEKYKK 215
            SSVT  L+YL NGS  L F  +  EY++P+ ++LKA V  +D EIF  +    YD  Y  
Sbjct: 244  SSVTNTLHYLSNGSAMLRFSWRKNEYVVPIMLLLKAAVGASDREIFEGVIMKDYDNTY-- 301

Query: 216  EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
                     +++RV+++L   +  SL T+ QCL ++G+ F+ V+   +  S   V   ++
Sbjct: 302  ---------LTDRVELLLRSFKTYSLYTKEQCLDYLGKKFRVVLGLREDISNEEVGAWLL 352

Query: 276  RDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEK 335
               + VHL+D  +K  +LI+ML+KL+SLV      DNPDS Q+QEILLPG L  + +KE+
Sbjct: 353  NKVLLVHLDDLREKSRMLIYMLRKLYSLVSGDCAIDNPDSPQHQEILLPGSLYGMIVKER 412

Query: 336  LEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQT 395
            LE+ L   + L+  ++ N     DF +   + K+++K  +  +G  +   + TG L + +
Sbjct: 413  LEEALNAIRALVMMDVRNGAPTVDFQDGRYLGKILQK-VNFDVGARLSNFMATGNLVSPS 471

Query: 396  GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTP 455
            GLDLQQ +G+T+ AE+LN+ R+IS FR VHRGA FA L+TT+VRKLLPESWGFLCPVHTP
Sbjct: 472  GLDLQQASGFTIVAEKLNWHRYISHFRCVHRGAFFAELKTTTVRKLLPESWGFLCPVHTP 531

Query: 456  DGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL--------PK 507
            DG PCGLLNH+T +CR                    I+   + V  +PSL        P 
Sbjct: 532  DGSPCGLLNHLTRSCR--------------------IICEPLSVSHLPSLLYSRGLTQPF 571

Query: 508  LVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS--L 565
                   A L V LDGR++G    +  +++   LR  K      +P DLE+G+VP S   
Sbjct: 572  ASSIDGRANLCVQLDGRIIGWARPTLAKQLADDLRVWKTEGQHGVPLDLEIGWVPPSDGA 631

Query: 566  GGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAF 625
            GG YPGL+LF+   + +RPV+ ++     +   ++IG FEQV+M+I   +          
Sbjct: 632  GGQYPGLFLFSGRSRMMRPVKFLA-----NGKTDMIGSFEQVYMDIAVKEE----EIEKG 682

Query: 626  PATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHL 685
              TH E   +  +S++AN+TP+SD NQSPRN+YQCQM KQ+MG    AL+ R D KLY L
Sbjct: 683  IETHVEFSTSNFMSILANMTPFSDFNQSPRNIYQCQMGKQSMGTPATALRHRTDNKLYRL 742

Query: 686  QTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIY 745
            QT QTP+VR   +  Y +D +P G NA+VAV++YTGYDMEDAMILNKS+ +RG  +G +Y
Sbjct: 743  QTGQTPVVRPALHNTYAMDSFPNGMNAVVAVISYTGYDMEDAMILNKSAHERGFGYGTVY 802

Query: 746  QTETIDLSDDGNKVDRGQK------LFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCS 799
            +++ +DL+D    V    +      L R  +        +D DGLP VGQ   PG+P  +
Sbjct: 803  KSQIVDLTDLHGPVKSTSQTPLFFGLARDVRRDDKRREKVDEDGLPIVGQQYLPGDPIAA 862

Query: 800  IYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRH 858
              D+T+   +    KG E  + D V +   ++ +   QK +I  R  R P+IGDKFSSRH
Sbjct: 863  YVDETSGRTKFVKYKGDEVAYTDCVRLIGGDAGDTELQKIHIMLRIPRAPVIGDKFSSRH 922

Query: 859  GQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMD 918
            GQKGVCSQ WP +DMPFS  +G++PD+IINPHAFPSRMTI ML+ES+AAK G++HG   D
Sbjct: 923  GQKGVCSQKWPAVDMPFS-ESGIQPDVIINPHAFPSRMTIGMLVESMAAKAGAMHGIAQD 981

Query: 919  ATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIG 978
            ATPF  S           E  + V   GE L   GFNY+G E +YSG+ G E   +I+ G
Sbjct: 982  ATPFQFS-----------EDDTAVAYFGEQLVAAGFNYYGNEPMYSGITGEEFAADIYFG 1030

Query: 979  PVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLH 1038
             VYYQRLRHMV+DKFQVR+TG +D++TRQP+KGRKR GGIRFGEMERD+L+AHG ++LL 
Sbjct: 1031 VVYYQRLRHMVNDKFQVRTTGPVDKLTRQPVKGRKRAGGIRFGEMERDALIAHGTSFLLQ 1090

Query: 1039 DRLHTCSDYHVADVCSLCGSVLT-----------------ATFIHP-------------- 1067
            DRL  CSDY  A VC  CGS+++                 A   +P              
Sbjct: 1091 DRLMNCSDYSTAWVCRTCGSIISLGYEDVSLGQDVDSTSAALLSNPAGVYCRVCRGRALD 1150

Query: 1068 ---QKRAIREIGGLP--PAR-------APKKVTCHACQTSKGMETVAMPYVFRYLAAELA 1115
                +R     G  P  P R        P+            M+ VA+PYVFRYL AELA
Sbjct: 1151 KEAHERQQYAAGASPDAPVRRSDVSLSVPRNNILGGVAKGADMDVVALPYVFRYLCAELA 1210

Query: 1116 AMNIKITLQL 1125
             M I ++LQ+
Sbjct: 1211 CMGIAVSLQV 1220


>gi|391863557|gb|EIT72865.1| RNA polymerase I, second largest subunit [Aspergillus oryzae 3.042]
          Length = 1237

 Score =  883 bits (2282), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/1163 (42%), Positives = 688/1163 (59%), Gaps = 130/1163 (11%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAG-SPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
            CR+   +Y GKL A +E++  +      VRE    GQ P+M++T RCHL+ A   +LV  
Sbjct: 128  CRERHATYRGKLRARIEYRVNNGDWMEAVRE---LGQVPIMMRTNRCHLEKATPAELVEH 184

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
            KEE+ E+GGYFI+NG E++ R +I+ K+N+PM++VR SF  R   YT   V IR VR DQ
Sbjct: 185  KEESEELGGYFIVNGNEKLIRMLIVGKRNFPMAIVRGSFVKRGHTYTKFGVQIRSVRPDQ 244

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
            +S T  L+YL +G+V   F  +  EYL+PV ++LKALV+TND EIF  L      +    
Sbjct: 245  TSQTNVLHYLSDGNVTFRFSWRKNEYLVPVMMILKALVETNDREIFEGLVGSASSE---- 300

Query: 217  KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
               + +  V++RV+++L   +  +L +R  C  ++GE F+PV+      S        +R
Sbjct: 301  --GINNTFVTDRVELLLRTYKGYNLHSRSACRAYLGEKFKPVLGVPMDMSNEEAGTEFLR 358

Query: 277  DYIFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
              +  HL + N       DKF L++FM++KL++LV      DNPD++ NQEILL G L  
Sbjct: 359  KVVLPHLGNQNVTETQDYDKFKLIMFMIRKLYALVAGDCAPDNPDAVSNQEILLGGFLYG 418

Query: 330  IYLKEKLEDWLRKGKKLIQD-EIENNGKKFD--FFNLANIKKVMEKNPSKQIGTSIETML 386
            + LKE+LE+W+R    +++D  + N+G KF    F    + KV++++ ++ IG ++E  L
Sbjct: 419  MILKERLEEWVRSFGPILRDWSMRNHGAKFTDPSFERDFLSKVVKRS-NENIGGALEYFL 477

Query: 387  KTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESW 446
             TG L + TGLDLQQ +GYTV AE++NF RFIS FR +HRG+ FA L+TT+VRKLLPESW
Sbjct: 478  STGNLVSPTGLDLQQTSGYTVMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPESW 537

Query: 447  GFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL-RVLIGVGMIPSL 505
            GFLCPVHTPDG PCGLLNH+   C +++           S +  S L R+L+ +G    +
Sbjct: 538  GFLCPVHTPDGSPCGLLNHLAHKCLIST-----------SDIDVSHLPRLLVQLG----V 582

Query: 506  PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
                       ++V LDGR+VG     +   +   LR  KV  +  +P +LE+GYVP S 
Sbjct: 583  RSESSVSLEESVTVQLDGRIVGFCSPKQARMIADTLRHWKVEGSHNVPRELEIGYVPNSN 642

Query: 566  GGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNA 624
            GG YPG+Y+F+   +  R V+ + L       ++ +GPFEQ FMEI C P     G    
Sbjct: 643  GGQYPGIYMFSQAARMYREVKYLPL-----DKLDYVGPFEQPFMEIACLPSDLVAG---- 693

Query: 625  FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
              +TH E  PT +LS+VAN+TP+SD+NQSPRNMYQCQM+KQTMG    A+ +R D KLY 
Sbjct: 694  -ISTHIEFTPTNILSIVANMTPFSDYNQSPRNMYQCQMSKQTMGTPGTAIDYRTDNKLYR 752

Query: 685  LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI 744
            LQT QTPIVR   Y  YG+D +P GTNA+VA+++YTGYDM+DAMI+NKSS +RG  HG I
Sbjct: 753  LQTGQTPIVRPPLYNAYGLDNFPNGTNAVVAIISYTGYDMDDAMIINKSSHERGFGHGTI 812

Query: 745  YQTETIDLSDDGNKVDRGQ----KLFRRNKDAK---SLHSVIDSDGLPYVGQMIHPGE-- 795
            Y+T+   L +  ++ ++ +    KLF      +      + ID DGLP++G  +  G   
Sbjct: 813  YKTKVHSLDEKESRRNKSRREITKLFGFAPGGEIRAEWRNTIDEDGLPHIGARVKEGSLV 872

Query: 796  -PYCSI-YDKTTNSW-------RTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHT 845
              Y ++ YD  ++S+            K +E  ++D + +    +   P Q  ++++R  
Sbjct: 873  AAYHNVRYDAASDSYVNVDGITHFVKYKDAEEGYIDSIRIMGAETGIEPCQSLSVKYRIP 932

Query: 846  RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
            R P+IGDKFSSRHGQKGVCSQLWP +DMPFS  +G++PDLIINPHAFPSRMTI  ++ES+
Sbjct: 933  RKPVIGDKFSSRHGQKGVCSQLWPAVDMPFS-ESGIQPDLIINPHAFPSRMTIDQMIESM 991

Query: 906  AAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSG 965
            A K G+LHG   D+TPF  S           E  +  D  G  LR  G+NY+G E LYSG
Sbjct: 992  AGKAGALHGHPQDSTPFQFS-----------EENTAADYFGHQLRKAGYNYYGNEPLYSG 1040

Query: 966  VYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMER 1025
            + G E   +IFIG V+YQRLRHMV+DKFQVR+TG ++ +T QP+KGR +GGGIR GEMER
Sbjct: 1041 ITGKEFAADIFIGVVHYQRLRHMVNDKFQVRTTGPVNSLTGQPVKGRAKGGGIRVGEMER 1100

Query: 1026 DSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPAR--- 1082
            DSL+AHGAA++L DRL  CSD   A +C  CGS L+          +   GG   AR   
Sbjct: 1101 DSLIAHGAAFILQDRLMNCSDTQRAWLCRDCGSFLSTQ--------VALAGGSGKARNQG 1152

Query: 1083 ------------------APKKVTCHACQTSK----------------------GMETVA 1102
                              +   V C  C                           +  VA
Sbjct: 1153 AAAAAAKAASSQLTQASGSSGIVRCRRCAREAVFDDSRAITWEDGDGRRYVGGDNVTVVA 1212

Query: 1103 MPYVFRYLAAELAAMNIKITLQL 1125
            +P V RYL  ELAAM I++  ++
Sbjct: 1213 VPGVLRYLDVELAAMGIRMKFKV 1235


>gi|330819047|ref|XP_003291577.1| RNA polymerase I, second largest subunit [Dictyostelium purpureum]
 gi|325078245|gb|EGC31907.1| RNA polymerase I, second largest subunit [Dictyostelium purpureum]
          Length = 1117

 Score =  883 bits (2282), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/1168 (42%), Positives = 694/1168 (59%), Gaps = 106/1168 (9%)

Query: 10   EPLRELVRHHIESFDYMLDEGLSEM--------FDH------------------------ 37
            E L+ L++ HI+SFD+  D G+  +        F+H                        
Sbjct: 3    EELKSLIQPHIDSFDFFTDHGIDLILKSNEPLYFEHKERQYKIKFTQLKLGKPVHNFKEK 62

Query: 38   --------CRQAKISYTGKLMADVE-FQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGA 88
                     R+A ++Y      +V  ++ +D+  P+ +   + G+ P+M+K+R CHL G 
Sbjct: 63   EVRFYPNEAREAGVTYDAPFKGEVSLYEGVDSDEPIHKVDVDLGRMPIMVKSRFCHLNGL 122

Query: 89   DSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVV 148
             S++L+  +EE  E GGYFI+NG E+V R +++ K N+P+++ R ++ +R  GYT   + 
Sbjct: 123  SSEELIEKREEELEQGGYFIVNGNEKVVRMLVMTKANHPVALHRKAWTNRGPGYTKFGIT 182

Query: 149  IRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
            IRCVR D++S+T  L+Y+ +G + L F  + +E+ LP  ++LKAL DT + EI+ +L   
Sbjct: 183  IRCVRPDRTSITNNLHYISDGQITLRFLYRRQEFFLPATLLLKALKDTTEREIYENLV-- 240

Query: 209  YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYY 268
                    +G   +  +++RV++ L E +  ++ T+ + L +IG  F+       S S  
Sbjct: 241  --------QGDNENTFLTDRVELSLREQKINNINTQEEVLDYIGSRFRARSQLPSSFSNT 292

Query: 269  AVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
             + +  I  Y+FVHL +  DK+NLL+ M+QKL+S+V   S +DN DS    E+LL G + 
Sbjct: 293  QIGQWFIDSYVFVHLPNYKDKYNLLVLMIQKLYSMVAGKSGTDNIDSAAFHEVLLAGQIF 352

Query: 329  TIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANI-KKVMEKNPSKQIGTSIETMLK 387
               L EKL ++L   +       E+  K+ D   L N+ KK +EKN   +IG      L 
Sbjct: 353  GSILGEKLTEYLESTRSFTLKHFEDKKKEND--KLENVFKKTVEKN--FKIGDRFNYFLA 408

Query: 388  TGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWG 447
            TG L + +GLDLQQ +G+ V A++LNFLRFIS FR++HRGA FA ++TTS+RKL+PESWG
Sbjct: 409  TGNLRSNSGLDLQQTSGFVVIADKLNFLRFISHFRSIHRGAFFATMKTTSIRKLMPESWG 468

Query: 448  FLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPK 507
            FLCPVHTPDG PCGLLNH+TS C V    D   + +   K R  I   L   GM+P    
Sbjct: 469  FLCPVHTPDGAPCGLLNHLTSACLVT--VDPLQD-QKVLKARPLIPSFLATHGMLPIDMT 525

Query: 508  LVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK-VSAASVIPDDLEVGYVPLSL- 565
             V S     L++ LDG V+G I     E++V  LR L+ V     IP  +E+ Y P S  
Sbjct: 526  TVFSH--QYLTITLDGCVIGKIEQKAGEELVTMLRYLRSVGTEPAIPKTIEISYSPPSSV 583

Query: 566  -GGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRN 623
                YPG+ LFTS  +F+RPV N++   EE     LIGP EQ++MEI   P+    G   
Sbjct: 584  ENSQYPGISLFTSGARFMRPVINLTSGKEE-----LIGPQEQLYMEIAVVPNEVIKG--- 635

Query: 624  AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
                TH E  PT M S++ANLTP+SD+NQSPRNMYQCQMAKQTMG  + +  FR D KLY
Sbjct: 636  --VTTHIETSPTAMFSLLANLTPFSDYNQSPRNMYQCQMAKQTMGTPLHSYPFRTDNKLY 693

Query: 684  HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
             +Q  Q PIV T    KY +++Y  G NA++AV++ TGYDMEDAMI+NKS+ +RG  HG 
Sbjct: 694  KIQNIQKPIVHTKNQFKYRVNDYAHGCNAVIAVISNTGYDMEDAMIINKSAYERGFGHGS 753

Query: 744  IYQTETIDLSDDGNKVDRGQKLF-RRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYD 802
            +Y+ E IDL +  ++ +  +  F R N    +L   ID DGLP+VG++I PGEPY +   
Sbjct: 754  VYKNEYIDLDEGLSRFESKKTFFGRPNSSVDNLGDFIDVDGLPFVGRLIKPGEPYYTYIR 813

Query: 803  KTTNSWRTNSRKGSESVFVDYVAVDMKN--SKNLPQKAN---IRFRHTRNPIIGDKFSSR 857
             +         KG E  +++ V +   +  +   P K N   ++ R+ RNP+IGDKFSSR
Sbjct: 814  PSDGKQVVKDYKGKEEAYIEEVRILFASGGTGREPSKINNICVKLRYNRNPVIGDKFSSR 873

Query: 858  HGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFM 917
            HGQKGV SQLWP+++MPF+  +GM+PD+IINP+AFPSRMTI ML+E +A K G++HGKF 
Sbjct: 874  HGQKGVLSQLWPEVNMPFTE-SGMKPDVIINPNAFPSRMTIGMLVEILAGKAGAIHGKFQ 932

Query: 918  DATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFI 977
            DAT F             DE  + +D  GE L   GFN  G E +YSG  G E   EIF 
Sbjct: 933  DATAFQ-----------FDEKNTAIDFFGEQLSKSGFNRFGNETMYSGTTGKEFEAEIFF 981

Query: 978  GPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLL 1037
            G  YYQRLRHMV DK+QVR+ G ++ +TRQPIKGRK GGGIRFGEMERDSLLAHGA++ L
Sbjct: 982  GVCYYQRLRHMVKDKYQVRALGKVNALTRQPIKGRKVGGGIRFGEMERDSLLAHGASFCL 1041

Query: 1038 HDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKG 1097
            +DRL   SD+    VC LCGS LT   I+ +K    +              C AC+++  
Sbjct: 1042 NDRLMKSSDFAKIKVCKLCGSTLT---IYSKKDYSNQTVS----------ECKACKSTDS 1088

Query: 1098 METVAMPYVFRYLAAELAAMNIKITLQL 1125
            +  V++PYVF YL AELAA+NI + L +
Sbjct: 1089 ISIVSIPYVFTYLVAELAAVNITMKLTV 1116


>gi|50552684|ref|XP_503752.1| YALI0E09845p [Yarrowia lipolytica]
 gi|49649621|emb|CAG79343.1| YALI0E09845p [Yarrowia lipolytica CLIB122]
          Length = 1165

 Score =  883 bits (2281), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 479/1116 (42%), Positives = 675/1116 (60%), Gaps = 96/1116 (8%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR+   +Y  +++  +   Y   G P   E  + G  P+M+ + RCHL+G   + +V+ K
Sbjct: 108  CRERMATYRARMV--LTLGYSVNGGPEKFESRDVGMIPIMMGSNRCHLEGMGPKDMVAHK 165

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EE+ E GGYF++NGLE++ R +I+ ++N+P++++R SF  R   YT   V IR VR DQS
Sbjct: 166  EESEEQGGYFVINGLEKLIRLLIVQRRNHPLAIIRKSFTKRGSNYTTFGVQIRSVRPDQS 225

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            S T  L+YL +G + + F  +  EYL+PV ++LKALV+TND EIF+ +           +
Sbjct: 226  SQTNVLHYLSDGGITMRFSWRKNEYLVPVMMILKALVETNDREIFDGIVA--------SE 277

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
            G+  +  +++R++++L   +   LT++ + L  +GE F+ V+D  +  S   V   +++ 
Sbjct: 278  GS--NSFLTDRLELLLRNYKSYKLTSKQENLAFLGEKFRIVMDAPKDMSNEDVGRLMLKR 335

Query: 278  YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
             I VHL DN DKF +L+FM++KL++LV      DNPD++Q+QE+LL G L  + +KE++E
Sbjct: 336  VILVHLQDNTDKFRMLLFMIRKLYALVASECSPDNPDAVQHQEVLLGGFLYGMIIKERME 395

Query: 338  DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNP--SKQIGTSIETMLKTGRLATQT 395
            ++L      ++ E++   KK    +L + K +    P  ++ IG  +   L TG L + T
Sbjct: 396  EYLSNFCATVRTELQ---KKKQSLHLDDPKIMQRICPRINEDIGRKLHYFLSTGNLVSHT 452

Query: 396  GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTP 455
            GLDLQQ  GYTV  E++NF RFI+ FR +HRG+ FA L+TT VRKLLPESWGFLCPVHTP
Sbjct: 453  GLDLQQTTGYTVIVEKINFHRFIAHFRMIHRGSFFAELKTTDVRKLLPESWGFLCPVHTP 512

Query: 456  DGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPA 515
            DG PCGLLNH+   C ++      G+I        S+L  L G+      P    +  P 
Sbjct: 513  DGSPCGLLNHLAHKCLISVKKSDVGDI-------DSVLNQL-GIS-----PAGALANTPQ 559

Query: 516  VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLF 575
               V+LDG+++G       ++    +R+ KV+  + +P DLEVG VP S GG YPGLYLF
Sbjct: 560  KSVVMLDGKIIGWCTHEIAQQAANTIRQWKVTGDARLPQDLEVGLVPPSRGGQYPGLYLF 619

Query: 576  TSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEEIHP 634
                +F+RPV++++   E+     ++GPFEQV++ +   PD            +H E  P
Sbjct: 620  AEASRFMRPVKHLATEKED-----IVGPFEQVYLNVAVTPD------EITNVHSHVEYSP 668

Query: 635  TGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVR 694
            T +LS++AN+TP+SD NQSPRNMYQCQM KQ MG +   L  R+D K+Y LQT Q+PIVR
Sbjct: 669  TNILSILANMTPFSDFNQSPRNMYQCQMGKQAMG-TPGVLTHRSDNKMYRLQTGQSPIVR 727

Query: 695  TNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD 754
               + +YG+D +P G NA+VAV++YTGYDM+DAMI+NKS+ +RG  HG IY+TE +DL++
Sbjct: 728  AGLFDEYGLDNFPNGMNAVVAVISYTGYDMDDAMIINKSAHERGFGHGTIYKTEKVDLTE 787

Query: 755  DGNKVDRGQKLFRRNKD--AKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNS 812
                 D     F    D   +     +D DGLP VG  +  G+P  + YD  +N      
Sbjct: 788  KQKPGDPTLLHFGFGPDNWPREWTQTLDVDGLPLVGAKLSNGDPIAAYYDSNSNKTMCLK 847

Query: 813  RKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDID 872
             K  E+ FV+ V +   +S    QK  ++ R  R+P+IGDKFSSRHGQKGVCSQ WP  D
Sbjct: 848  YKSGETGFVEEVKLLGDDSLGELQKITVKLRIPRSPVIGDKFSSRHGQKGVCSQKWPTYD 907

Query: 873  MPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGD 932
            MPFS  +G++PD+IINPHAFPSRMTI M +ES+AAK G+LHG   DATP+  S       
Sbjct: 908  MPFS-ESGIQPDVIINPHAFPSRMTIGMFVESLAAKSGALHGMAQDATPWQFS------- 959

Query: 933  TGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDK 992
                E+ +  +  GE L   G+NYHG E +YSGV G EL C+I++G V+YQRLRHMV+DK
Sbjct: 960  ----ETNTAAEYFGEQLLKAGYNYHGNEPMYSGVTGQELRCDIYVGVVFYQRLRHMVNDK 1015

Query: 993  FQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADV 1052
            FQVRSTG ++ +T QP+KGRKR GGIR GEMERD+L+ HG +YLL DRL  CSDY    +
Sbjct: 1016 FQVRSTGPVNPLTMQPVKGRKRSGGIRVGEMERDALIGHGTSYLLQDRLLNCSDYTQTSM 1075

Query: 1053 CSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTS------------KGM-- 1098
            C  CGS LTAT         R           + V C  C T             +GM  
Sbjct: 1076 CRTCGS-LTATQEAQSTTGHR-----------RGVKCRRCATQLEKDSFSWDSPPEGMWQ 1123

Query: 1099 -------------ETVAMPYVFRYLAAELAAMNIKI 1121
                          TVA+P+V +YL +EL+AM IK+
Sbjct: 1124 DAIGNCFVGGDDTTTVAIPFVLKYLNSELSAMGIKM 1159


>gi|427782465|gb|JAA56684.1| Putative rna polymerase ii second largest subunit [Rhipicephalus
            pulchellus]
          Length = 1059

 Score =  883 bits (2281), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/1096 (44%), Positives = 670/1096 (61%), Gaps = 73/1096 (6%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR    +Y GKL   V +         V++    G+ P+M+K++ C++      +LV   
Sbjct: 28   CRNRGTTYRGKLDVTVVWSVNGVHQDTVKK--TVGEVPIMVKSQVCNIAKMSPAELVKRG 85

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EEA E GGYF++NG E++ R +I+ ++NYP++MVR S+++R + +++  V +R V+ DQ+
Sbjct: 86   EEAGEFGGYFVVNGNEKIIRMLIMTRRNYPIAMVRPSWKNRGKMFSEYGVSLRSVKPDQT 145

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
               + L+YL NG+V++ F    + + +PV ++LKAL D +D  I++ L    +E     K
Sbjct: 146  GTNMVLHYLTNGTVQVMFSYMKELFFMPVMMLLKALCDVSDHHIYSELIAGKEED-SFFK 204

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
            G + +         +L +VQ+  L TR Q   +IGE F+  +   +  S   VA  ++R 
Sbjct: 205  GCIIN---------MLRQVQNEGLLTRDQVRAYIGEKFRICMRLPEWYSDEEVAVFLLRH 255

Query: 278  YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
             I VH   N DKFNL++ M++KLF++       ++ D+  N EILL GHL  + LKEKL 
Sbjct: 256  CICVHTESNIDKFNLILLMIRKLFAVAKGECAIESTDNPMNHEILLAGHLYLMVLKEKLS 315

Query: 338  DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
             +L   ++ I+ + ++ G  F   ++AN  + +    S  + +++   L TG + T+TGL
Sbjct: 316  GFLYSIRQNIEKKAKSTGSAFKL-SMANFSRALAT--SWDLTSAMNYFLATGNVVTKTGL 372

Query: 398  DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDG 457
             L Q  G TV AE+LN+ R++S FR VHRGA FA +RTT+VRKLLPE+WGFLCPVHTPDG
Sbjct: 373  GLMQFTGTTVIAEKLNYWRYLSHFRCVHRGAFFAEMRTTTVRKLLPEAWGFLCPVHTPDG 432

Query: 458  EPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP---SLPKLVKSGPP 514
             PCGLLNHMT+   V ++    G++            +L G+GM P     P + +S   
Sbjct: 433  APCGLLNHMTALVEVVNHQFPTGHLPS----------LLAGLGMAPLDGIRPNVAES--- 479

Query: 515  AVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVP-LSLGGAYPGLY 573
                V+LDGRV+G +  S +E +V  LR +K      +P  LE+G+VP  S    YPG++
Sbjct: 480  --YVVVLDGRVLGYVEDSSVENMVTSLRTMKACGLEKVPQTLEIGFVPKTSQASQYPGVF 537

Query: 574  LFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPA--THEE 631
            LFTS  + +RPV N+      +  IE IG FEQV + I         R  A+    TH+E
Sbjct: 538  LFTSVARMMRPVLNM-----RTDTIEWIGTFEQVHLSICVV------RDEAYEGITTHQE 586

Query: 632  IHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTP 691
            +  T MLS++AN+ PYSD NQSPRNMYQCQM KQTMG   QAL++R+D KLY +QTPQTP
Sbjct: 587  LRQTSMLSLLANMIPYSDFNQSPRNMYQCQMGKQTMGTPCQALRYRSDNKLYRIQTPQTP 646

Query: 692  IVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETID 751
            +VR   Y  Y +DEYPTGTNAIVAV++YTGYDMEDAM+LNKSSV+RG  HG IY++E ++
Sbjct: 647  LVRPTAYDHYDMDEYPTGTNAIVAVISYTGYDMEDAMVLNKSSVERGFKHGSIYKSEVVN 706

Query: 752  LSDDGNKVDRGQKL-FRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRT 810
            L      V R   L F R    + L   ID DGLPY+G  +   +P CS  +  T   + 
Sbjct: 707  LRVLAGDVGRQVSLVFGRKMTDRHLEGHIDLDGLPYIGTKVEHNQPVCSFINIVTGETKV 766

Query: 811  NSRKGSESVFVDYVAVDMKNS-KNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWP 869
            +  K  E+ +V  V +   ++  ++ Q   I +   RNP+IGDKF+SRHGQKGVCS L P
Sbjct: 767  HKYKNMEAGYVHEVKLLGNDTGTDVLQAVCITYWIQRNPMIGDKFASRHGQKGVCSLLLP 826

Query: 870  DIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKT 929
              +MPF+  +GM PD+I NPH FPSRMTI M++ES+A K   LHG   DATPF  S    
Sbjct: 827  VENMPFTE-SGMTPDIIFNPHGFPSRMTIGMMIESMAGKSSMLHGVAHDATPFKFS---- 881

Query: 930  NGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMV 989
                   E +   +  GE+L+  G+NY+G E +YSGV G EL  +IF G VYYQRLRHMV
Sbjct: 882  -------EDQPASEYFGELLQKAGYNYYGTERMYSGVDGRELEADIFFGVVYYQRLRHMV 934

Query: 990  SDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHV 1049
            +DK+QVR+TG +D +T QP+KGRKR GGIRFGEMERDSLLAHGA++LL DRL  CSD  +
Sbjct: 935  ADKYQVRTTGPVDTLTHQPVKGRKRAGGIRFGEMERDSLLAHGASFLLQDRLFNCSDKSL 994

Query: 1050 ADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRY 1109
            A VCS C S+L+      +   +R            K  C  CQTS  +E +++PYVFRY
Sbjct: 995  AYVCSKCQSMLSPVVDKAESDVVR------------KWKCPTCQTSDFIEIISIPYVFRY 1042

Query: 1110 LAAELAAMNIKITLQL 1125
            L AELAAMNI + LQ+
Sbjct: 1043 LVAELAAMNIGVKLQV 1058


>gi|1621594|gb|AAC52850.1| second largest subunit of RNA polymerase I [Mus musculus]
          Length = 1135

 Score =  882 bits (2280), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/1168 (42%), Positives = 680/1168 (58%), Gaps = 122/1168 (10%)

Query: 12   LRELVRHHIESFDYMLDEGLSEMFD----------------------------------- 36
            L++L R H++SF+Y   EGLS                                       
Sbjct: 35   LQDLTRAHVDSFNYAALEGLSHAVQAIPPFEFAFKDERISLTIVDAVISPPSVPKGTICK 94

Query: 37   -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
                    CR  K +Y G+L AD+ +        ++++    G  P+M+K++ C+L    
Sbjct: 95   DLNVYPAECRGRKSTYRGRLTADISWAVNGVPKGIIKQFL--GYVPIMVKSKLCNLYNLP 152

Query: 90   SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
             + L+   EEA EMGGYFI+NG+E+V R +I P++N+P++MVR  ++ R  GYT   V +
Sbjct: 153  PRVLIEHHEEAEEMGGYFIINGIEKVIRMLIEPRRNFPVAMVRPKWKSRGLGYTQFGVSM 212

Query: 150  RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
            RCVR++ S+V + L+Y+ NG+V L F  + + + LP+G  LKALV  +D +IF  L    
Sbjct: 213  RCVREEHSAVNMNLHYVENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269

Query: 210  DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
                 KE+ +     VS+ ++I++ E       ++ Q L ++GE F+  +          
Sbjct: 270  ---KGKEEDSFFRNSVSQMLRIVIEE----GCHSQKQVLNYLGECFRVKLSLPDWYPNVE 322

Query: 270  VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
             AE ++   I +HL  N DKF L   M +KLF+L     + DNPDSL NQE+L PG L  
Sbjct: 323  AAEFLLNQGICIHLQSNTDKFYLRCLMTRKLFALARGECMDDNPDSLVNQEVLSPGQLFL 382

Query: 330  IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
            ++LKEK+E+WL   K ++    +      +  NL  I  +       ++    E +L TG
Sbjct: 383  MFLKEKMENWLVSIKIVLDKRAQKANVSINNENLMKIFSM-----GTELTRPFEYLLATG 437

Query: 390  RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
             L ++TGL   + +G  V A++LNFLR++S FR VHRGA+FA +RTT+VR+LLPESWGFL
Sbjct: 438  NLRSKTGLGFLEDSGLCVVADKLNFLRYLSHFRCVHRGAAFAKMRTTTVRRLLPESWGFL 497

Query: 450  CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
            CPVHTPDG PCGLLNH+T+ C V + +              SI  +L G+G+  +     
Sbjct: 498  CPVHTPDGAPCGLLNHLTAVCEVVTKFGDTA----------SIPALLCGLGVTGA----- 542

Query: 510  KSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
             + P    S    VLLDG +VG +      +V   LRR KV     IP  +EV  +P++ 
Sbjct: 543  DTAPCRPYSDCYPVLLDGVMVGWVDKDLAPEVADTLRRFKVLREKRIPPWMEVALIPMTG 602

Query: 566  GGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRN 623
              + YPGL+LFT+P + VRPV+N+ L  EE     LIG  EQ+FM +    D   GG   
Sbjct: 603  KPSLYPGLFLFTTPCRLVRPVQNLELGREE-----LIGTMEQLFMNVAIFEDEVFGGI-- 655

Query: 624  AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
               +TH+E+ P  +LSV+AN  P+SDHNQSPRNMYQCQM KQTMGF +   + R+D KLY
Sbjct: 656  ---STHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQNRSDNKLY 712

Query: 684  HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
             LQTPQ+P+VR   Y  Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG  HG 
Sbjct: 713  RLQTPQSPLVRPCMYDFYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGS 772

Query: 744  IYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDK 803
            +Y++E IDLS+   + +       +  D + +   +D DGLP +G  +  G+PY S  + 
Sbjct: 773  VYKSEFIDLSEKFKQGEDNLVFGVKPGDPRVMQK-LDDDGLPSIGAKLEYGDPYYSYLNL 831

Query: 804  TTNSWRTNSRKGSESVFVDYVAV---DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQ 860
             T        K  E+  VD + V   DM + K   +   I  R  RNP IGDKF+SRHGQ
Sbjct: 832  NTGEGFVVYYKSKENCVVDNIKVCSNDMGSGKF--KCICITVRIPRNPTIGDKFASRHGQ 889

Query: 861  KGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDAT 920
            KG+ S+LWP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+A K  +LHG   DAT
Sbjct: 890  KGILSRLWPAEDMPFTE-SGMMPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDAT 948

Query: 921  PFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPV 980
            PF  S           E  S ++  GEML+  G+N++G E LYSG+ G EL  +IFIG V
Sbjct: 949  PFIFS-----------EENSALEYFGEMLKAAGYNFYGTERLYSGISGMELEADIFIGVV 997

Query: 981  YYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDR 1040
            YYQRLRHMVSDKFQVR+TG  D++T QP+ GR   GGIRFGEMERD+LLAHG ++LLHDR
Sbjct: 998  YYQRLRHMVSDKFQVRTTGARDKVTNQPLGGRNVQGGIRFGEMERDALLAHGTSFLLHDR 1057

Query: 1041 LHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP---KKVTCHACQTSKG 1097
            L  CSD  VA VC  CGS+L+     P           PP+ +    +K  C  C  S  
Sbjct: 1058 LFNCSDRSVAHVCVECGSLLSPLLEKP-----------PPSWSAMRNRKYNCTVCGRSDT 1106

Query: 1098 METVAMPYVFRYLAAELAAMNIKITLQL 1125
            ++TV++PYVFRY  AELAAMNIK+ L +
Sbjct: 1107 IDTVSVPYVFRYFVAELAAMNIKVKLDV 1134


>gi|440640399|gb|ELR10318.1| DNA-directed RNA polymerase I subunit RPA2 [Geomyces destructans
            20631-21]
          Length = 1193

 Score =  882 bits (2279), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/1144 (43%), Positives = 684/1144 (59%), Gaps = 107/1144 (9%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPV--VRERFNFGQFPVMLKTRRCHLQGADSQ 91
            M   CR+  ++Y GK+ A +E++ ++ G PV  +RE    GQ P+MLK+ +CHL+     
Sbjct: 103  MPAECRERHVTYRGKMSARLEYR-INGGDPVEFIRE---LGQIPLMLKSNKCHLENNSPA 158

Query: 92   KLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC 151
             LV  KEE+ E+GGYF++NG+E++ R +I+ ++N+PM+++R SF  R   YT  A +IR 
Sbjct: 159  LLVERKEESEELGGYFVVNGIEKLIRLLIVNRRNFPMAIIRPSFEGRGPTYTKFATLIRS 218

Query: 152  VRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDE 211
            VR DQ+S T  L+YL +G+V   F  +  E+L+PV +++KALV+TND EIF  L      
Sbjct: 219  VRPDQTSQTNVLHYLDDGNVTFRFSWRKNEFLVPVMMIMKALVETNDREIFEDLVGGAGS 278

Query: 212  KYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVA 271
            K         +  +++RV+++L   +   L T+ +   ++GE F+ V+    + S Y V 
Sbjct: 279  K------GANNTFLTDRVELLLRTYKAYGLYTKSKTRAYLGEKFRIVLQVPDNMSDYDVG 332

Query: 272  ETVIRDYIFVHLND-------NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLP 324
               +R  +  HL +       + DKF +L+FM++KL+SLV      DNPD++QNQEILL 
Sbjct: 333  TEFLRKIVMPHLGNVDVTEVQDADKFQMLLFMIRKLYSLVAGDCSLDNPDAVQNQEILLG 392

Query: 325  GHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEK---NPSKQIGTS 381
            G L  + +KE+L+DWL    +L   E        +F +   +K    K     ++ +G +
Sbjct: 393  GFLYGMIIKERLDDWLSTALRLGLREYTRRNPANNFASPEFLKDFPTKIFGRTNEAVGQA 452

Query: 382  IETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKL 441
            +E  + TG L + TGLDLQQ +G+TV AE++NFLRFIS FR VHRG+ FA L+TT+VRKL
Sbjct: 453  LEYFMSTGNLISPTGLDLQQTSGFTVVAEKINFLRFISHFRMVHRGSFFAQLKTTTVRKL 512

Query: 442  LPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGM 501
            LPESWGFLCPVHTPDG PCGLLNH++  C++ ++    G +          L V +GV  
Sbjct: 513  LPESWGFLCPVHTPDGSPCGLLNHLSHKCKILTHGVDAGALPS--------LAVDLGVVG 564

Query: 502  IPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYV 561
              S      +     + V+LDG+++G     +  ++   LR  KV     +P +LE+ YV
Sbjct: 565  FSS------ASTDESVVVMLDGKILGWCTPKQSLRIADTLRFWKVEGTHNVPVELEIAYV 618

Query: 562  PLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGG-DGG 620
            P S GG YPG+YL+T P + VRPV+ + L  E+      +GP EQ FM I   +   D G
Sbjct: 619  PASHGGQYPGVYLYTGPSRMVRPVKYLPLDKED-----WVGPLEQPFMSIAVTEQEIDSG 673

Query: 621  RRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQ 680
                   TH E  PT +LS++AN+TP+SD NQSPRNMYQCQM KQTMG    AL++R D 
Sbjct: 674  E-----TTHVEFDPTNILSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPGTALRYRTDN 728

Query: 681  KLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMC 740
            K Y LQT QTPIVR   +  YG D +P G NA+VAV++YTGYDM+DAMI+NKS+ +RG  
Sbjct: 729  KSYRLQTGQTPIVRAPLHNDYGFDNFPNGFNAVVAVISYTGYDMDDAMIINKSAHERGFG 788

Query: 741  HGQIYQTETIDLSDDGNKVDRGQKL-----FRRNKDAKS-LHSVIDSDGLPYVGQMIHPG 794
            HG IY+ +  +L D+G K    +K+     F      KS   ++ID DGLP+VG+++  G
Sbjct: 789  HGTIYKVKKYEL-DEGQKSRSAKKVSKLFGFAPGGLVKSEWKALIDEDGLPFVGRLVKEG 847

Query: 795  EPYCSIYDKTTNS-WRTNSRKG---------SESVFVDYVAVDMKNSKNLP-QKANIRFR 843
            +P C+ +  TT++  +  +R G          E  FV+ V V    + N P Q  +++FR
Sbjct: 848  DPVCAWHTVTTDANGKLVNRDGITHFEKYKEGEMTFVEEVRVIGSENGNEPAQMISVKFR 907

Query: 844  HTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLE 903
              R+P IGDKFSSRHGQKGVCSQ WP  DMPFS  +GM+PD+IINPHAFPSRMTI M +E
Sbjct: 908  VPRSPTIGDKFSSRHGQKGVCSQKWPAGDMPFS-ESGMQPDIIINPHAFPSRMTIGMFVE 966

Query: 904  SVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLY 963
            S+A K G+LHG   D+TPF             DE  +  +  G  L   G+NYHG E +Y
Sbjct: 967  SLAGKAGALHGLAQDSTPFR-----------FDEENTAGNYFGHQLMKAGYNYHGNEPMY 1015

Query: 964  SGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEM 1023
            SG+ G EL  +I++G VYYQRLRHMV+DKFQVR+TG +  +T QPIKGRK+GGGIR GEM
Sbjct: 1016 SGITGEELHADIYVGLVYYQRLRHMVNDKFQVRTTGPITALTGQPIKGRKKGGGIRVGEM 1075

Query: 1024 ERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARA 1083
            ERDSLLAHG A+LL DRL  CSDY  + VC  CG+ L+   + P   A       P  + 
Sbjct: 1076 ERDSLLAHGTAFLLQDRLLNCSDYTRSWVCKGCGTFLS---VQPTVSAF-----APRKKG 1127

Query: 1084 PKKVTCHACQTS--------------------KGMET--VAMPYVFRYLAAELAAMNIKI 1121
               V C  C                        G ET  VA+P V +YL  ELAAM I +
Sbjct: 1128 TGVVRCRRCAVKVDGFVADGEVWEDGEGQRWVGGEETTVVAVPGVLKYLDVELAAMGIML 1187

Query: 1122 TLQL 1125
               +
Sbjct: 1188 KYNI 1191


>gi|322709186|gb|EFZ00762.1| DNA-directed RNA polymerase I 135 kDa polypeptide [Metarhizium
            anisopliae ARSEF 23]
          Length = 1231

 Score =  882 bits (2279), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/1158 (42%), Positives = 684/1158 (59%), Gaps = 130/1158 (11%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPV--VRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
            CR+  +SY G+L A  E+  ++ G P+  VRE    GQ P+M+K+ RCHL+     +LV 
Sbjct: 118  CRERHVSYRGRLSATFEYS-INGGEPIEFVRE---LGQVPIMIKSNRCHLENNSPAQLVQ 173

Query: 96   LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
             KEE+ E+GGYFI+NG+E++ R + + K+N+PM++ R SF+ R  GYT   V++R VR D
Sbjct: 174  RKEESEELGGYFIVNGIEKIIRLLQVNKRNFPMAINRPSFQSRGAGYTSYGVIVRSVRPD 233

Query: 156  QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
            ++S T  L+YL +G++      +  EYL+PV ++LKALV+TND EIF  L      K  +
Sbjct: 234  ETSQTNVLHYLNDGNITFRISWRKNEYLIPVIMILKALVETNDREIFEGLIGPMGSKVTE 293

Query: 216  EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
                  +  +++RV+++L   +   L ++ Q   ++GE F+ V+   ++ S Y V    +
Sbjct: 294  ------NTFLTDRVELLLRTYKSYGLYSKSQTRAYLGEKFRVVLGVPETMSDYEVGTEFL 347

Query: 276  RDYIFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
            R  + VHL + N       DKF +L+FM++KL++L       DNPD+LQNQEILL G L 
Sbjct: 348  RRIVLVHLGNVNVTEEQDLDKFRMLLFMVRKLYALAAGECAVDNPDALQNQEILLGGFLY 407

Query: 329  TIYLKEKLEDWLRKG-----KKLIQDEIENNGKKFDF---FNLANIKKVMEKNPSKQIGT 380
               LKE+L+++L  G     +  ++   E      DF   F  A  KK  E      +G 
Sbjct: 408  GQILKERLDEFLSVGVRSSLRDFLRRHPEVPFTSEDFRKEFPGAIFKKANE-----NLGN 462

Query: 381  SIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRK 440
            ++E  L TG L + +GLDLQQ AG+TV AE+LNFLRFIS FR VHRGA FA LRTT+VRK
Sbjct: 463  ALEYFLSTGNLQSPSGLDLQQTAGFTVVAEKLNFLRFISHFRMVHRGAFFAQLRTTAVRK 522

Query: 441  LLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVG 500
            LLPESWGF+CPVHTPDG PCGLLNH+   C++ + +       D SK+   +  +    G
Sbjct: 523  LLPESWGFMCPVHTPDGSPCGLLNHLAHKCKIVTDH------VDASKLPALVKEL----G 572

Query: 501  MIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGY 560
            ++ +   L        + V++DG+++G     E  ++   LR  KV     +P  LE+GY
Sbjct: 573  VVDTSSALTSDN----VVVMMDGKILGWCTPKESLRIADCLRYWKVEGTHGVPLQLEIGY 628

Query: 561  VPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDG 619
            VP+S GG+YPG+Y+ ++P + VRPV+ + L  E+      +GP+EQ +M I   P   + 
Sbjct: 629  VPVSNGGSYPGVYITSTPARMVRPVKYLPLQKED-----FVGPYEQPYMSIAVLPQEIES 683

Query: 620  GRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRAD 679
            G      +TH E  PT MLS++AN+TP+SD NQSPRNMYQCQM KQTMG    A+++R D
Sbjct: 684  GV-----STHVEFDPTNMLSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPGAAIRYRTD 738

Query: 680  QKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGM 739
             K Y +QT QTPIVR   +  YG D +P G NA+VAV++YTGYDM+DAMILNKS+ +RG 
Sbjct: 739  NKSYRIQTGQTPIVRAPLHNDYGFDNFPNGMNAVVAVISYTGYDMDDAMILNKSAHERGF 798

Query: 740  CHGQIYQTETIDLSDD-----GNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPG 794
             HG IY+T+ I L DD        V +       +  + S   ++D DGLP+VG+++  G
Sbjct: 799  GHGTIYKTKKITLKDDSRTRAAKSVTKAFGFAPHSYVSASYQGMLDDDGLPHVGRLVQEG 858

Query: 795  EPYCSIYDKTTNSWRTN-----------SRKGSESVFVDYV-AVDMKNSKNLPQKANIRF 842
            +  C+ +   T  +  N             K  E+ FV+ V  +         Q  +I+F
Sbjct: 859  DVICA-WHTVTPDYNGNLVNLDGITHYEKYKDGETGFVEEVRLIGADTGGETLQTVSIKF 917

Query: 843  RHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLL 902
            R  R+PIIGDKFSSRHGQKGV SQ WP IDMPFS  +G++PD+IINPHAFPSRMTI M +
Sbjct: 918  RIPRSPIIGDKFSSRHGQKGVASQKWPAIDMPFS-ESGIQPDVIINPHAFPSRMTIGMFV 976

Query: 903  ESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVL 962
            ES+A K G+LHG   D+TPF             DE  + VD  G  L   G++YHG E +
Sbjct: 977  ESLAGKAGALHGLAQDSTPFK-----------FDEENTAVDYFGHQLMKAGYSYHGNEPM 1025

Query: 963  YSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGE 1022
            YSG+ G EL  +I+IG VYYQRLRHMV+DKFQVR+TG +   T QPIKGRKRGGGIR GE
Sbjct: 1026 YSGITGEELGADIYIGVVYYQRLRHMVNDKFQVRTTGPVVPTTGQPIKGRKRGGGIRVGE 1085

Query: 1023 MERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVL----TATFIHPQKRAIREIGGL 1078
            MERD+LLAHG A+LL DRL  CSDY  + +C  CGS L    T +   P K+        
Sbjct: 1086 MERDALLAHGTAFLLQDRLLNCSDYTKSWICRRCGSFLSVQPTVSQFAPGKK-------- 1137

Query: 1079 PPARAPKKVTCHACQT----SKGME------------------------TVAMPYVFRYL 1110
               RAP  V C  C T    + G++                         V +P   +YL
Sbjct: 1138 ---RAPTTVRCRNCATRLDETDGVDLTEVQGEIWEDGQGNCWVGGEHTTQVVVPGALKYL 1194

Query: 1111 AAELAAMNIKITLQLGDG 1128
              ELAAM +K+  ++  G
Sbjct: 1195 DVELAAMGVKLKYRVSKG 1212


>gi|380495062|emb|CCF32685.1| DNA-directed RNA polymerase I subunit RPA2 [Colletotrichum
            higginsianum]
          Length = 1225

 Score =  882 bits (2278), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/1140 (42%), Positives = 686/1140 (60%), Gaps = 101/1140 (8%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSP--VVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
            CR+   +Y G+L A  E++ ++ G P   VRE    GQ P+M+K+ RCHL+G    +LV 
Sbjct: 117  CRERHCTYRGRLSATFEYR-INNGDPKEFVRE---LGQVPIMVKSNRCHLEGNSPAQLVQ 172

Query: 96   LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
             KEE+ E+GGYFI+NG+E++ R + + ++N+PM++ R SF++R +GYT   +++R VR D
Sbjct: 173  RKEESEELGGYFIVNGIEKIIRMLQVNRRNFPMAINRPSFQNRGQGYTPYGIILRSVRPD 232

Query: 156  QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
            ++S T  L+YL +G++   F  +  EYL+PV ++LKALV+TND EIF  L      K  K
Sbjct: 233  ETSQTNVLHYLSDGNMTFRFSWRKNEYLVPVMMILKALVETNDREIFEGLIGLSGSKSAK 292

Query: 216  EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
                  +  +++RV+++L   +   L ++ +   ++GE F+ V+    + S Y V    +
Sbjct: 293  ------NTFLTDRVELLLRTYKSYGLYSKTETRAYLGEKFRVVLGVPDTMSNYDVGTEFL 346

Query: 276  RDYIFVHL-------NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
            R  + VHL        ++NDKF +L+FM++KL++LV      DNPD++QNQE+LL G L 
Sbjct: 347  RKIVLVHLGNINVTEKEDNDKFRMLLFMIRKLYALVAGDCSVDNPDAVQNQEVLLGGFLY 406

Query: 329  TIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKV---MEKNPSKQIGTSIETM 385
             + LKE+LE++L    +L   E         F +    K+    + ++ ++ IG  +E  
Sbjct: 407  GMILKERLEEFLTTAVRLSLREWTRKHPATPFTSQDFAKEFPANIFRHANENIGNGLEYF 466

Query: 386  LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
            L TG L + +GLDLQQ AG+TV AE+LNFLRF+S FR +HRGA FA L+TT+VRKLLPES
Sbjct: 467  LSTGNLTSPSGLDLQQTAGFTVVAEKLNFLRFLSHFRMIHRGAFFAELKTTTVRKLLPES 526

Query: 446  WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
            WGF+CPVHTPDG PCGLLNH+   C++ +         D SK+           G++  L
Sbjct: 527  WGFMCPVHTPDGSPCGLLNHLAHKCKIMT------EAVDASKI----------PGLVAEL 570

Query: 506  PKLVKSGPPAVLSV--LLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL 563
              +  S      SV  +LDGR+VG     E  ++   LR  KV     +P  LEVGYVP 
Sbjct: 571  GAVETSSAATDESVVVMLDGRIVGFCTPRESLRIADTLRYWKVEGTHGVPLQLEVGYVPP 630

Query: 564  SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRN 623
            S GG+YPG+YL ++P + VRPV+ + L  E+      +GP EQ +M I   +        
Sbjct: 631  SNGGSYPGIYLASAPARMVRPVKYLPLDKED-----FVGPHEQPYMSIAVVEN----EIV 681

Query: 624  AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
            +  +TH E+ PT MLS++AN+TP+SD NQSPRNMYQCQM KQTMG    AL++R D K+Y
Sbjct: 682  SGESTHVEVTPTNMLSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPATALRYRTDNKMY 741

Query: 684  HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
             LQ+ QTP+VR+  +  YG D +P G NA+VAV++YTGYDM+DAMILNKS+ +RG  HG 
Sbjct: 742  RLQSGQTPVVRSPLHNTYGFDNFPNGFNAVVAVISYTGYDMDDAMILNKSAHERGFGHGT 801

Query: 744  IYQTETIDLSDDG--NKVDRGQKLFRRNKDA---KSLHSVIDSDGLPYVGQMIHPGEPYC 798
            IY+T+ I L D+     V    KLF               +D DGLPYVG+++  G+  C
Sbjct: 802  IYKTKKITLKDESRTRAVKNISKLFGFAPGGFVKGHYRGQLDEDGLPYVGRLVQEGDVLC 861

Query: 799  SIYDKTTN----------SWRTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRN 847
            + +  + +                 K SE+ FV+ V V    + N P Q  +I+ R  R+
Sbjct: 862  AWHTVSADYSGKLINLDGQTHYEKYKESETAFVEEVRVIGSETGNEPAQTISIKLRVPRS 921

Query: 848  PIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAA 907
            P+IGDKFSSRHGQKGV SQ WP +DMPFS  +GM+PD+IINPHAFPSRMTI M +ES+A 
Sbjct: 922  PVIGDKFSSRHGQKGVASQKWPAVDMPFS-ESGMQPDVIINPHAFPSRMTIGMFVESLAG 980

Query: 908  KGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVY 967
            K G+LHG   D+TPF             +E  +  D  G  L   G+NYHG E +YSG+ 
Sbjct: 981  KAGALHGLAQDSTPFK-----------FNEENTAADYFGHQLMKAGYNYHGNEPMYSGIT 1029

Query: 968  GTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDS 1027
            G EL  +I++G VYYQRLRHMV+DK+QVR+TG +   T QPIKGRKRGGGIR GEMERD+
Sbjct: 1030 GEELAADIYVGVVYYQRLRHMVNDKYQVRTTGPVVPTTGQPIKGRKRGGGIRVGEMERDA 1089

Query: 1028 LLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLT-----ATFIHPQKR---------AIR 1073
            LLAHG A+LL DRL  CSDY  + +C  CGS L+     + F+  +K+         A +
Sbjct: 1090 LLAHGTAFLLQDRLLNCSDYTRSWICRTCGSFLSVQPTVSPFVGKKKQVTTVRCRNCATQ 1149

Query: 1074 EIGGLPPARAPKKVTCHACQTSKGMETVA--------MPYVFRYLAAELAAMNIKITLQL 1125
               G   A +  KV     +  +G + V         +P   ++L  ELAAM +K+  ++
Sbjct: 1150 LDAG--DAESAAKVEGEIWEDGQGNQWVGGENTTLVVVPGALKFLDVELAAMGVKLKYRI 1207


>gi|358057691|dbj|GAA96456.1| hypothetical protein E5Q_03123 [Mixia osmundae IAM 14324]
          Length = 1236

 Score =  882 bits (2278), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/1137 (42%), Positives = 675/1137 (59%), Gaps = 95/1137 (8%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
             R+   +Y G++    +  +   G PV  E    G  P+M+++ RCHL+G     LV  +
Sbjct: 147  ARERMETYAGEM--SCKLIWAVNGEPVHSELKKLGMLPIMVRSERCHLKGMAPAALVKHR 204

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EEA E+GGYFI+NG E++ R +I+P++N+ +++ R SF +R + YT   V IR VR DQS
Sbjct: 205  EEAEELGGYFIINGNEKIIRFLIVPRRNHVIALNRPSFGNRGKLYTAYGVQIRSVRPDQS 264

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVD--TNDLEIFNHLTCCYDEKYKK 215
             +T  L+YL NG + L F  +  EY++P+ ++LKAL+D   +D  I+  +          
Sbjct: 265  GLTSTLHYLKNGCLHLRFSWRKNEYMIPLMMILKALLDDEASDKNIYAGIM--------- 315

Query: 216  EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
             +    +   S+R +++L   +D  L +  QC  ++G+ F+ V+   +  S   V   ++
Sbjct: 316  -QNDFANTYYSDRAELLLRTFKDYGLRSGRQCRAYLGKSFRIVLGCPEDWSNERVGRFLL 374

Query: 276  RDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEK 335
               + VHL++  DKF +L+FM++KL++LV     +DNPDS Q+QEIL+PG L    +KEK
Sbjct: 375  ERIVLVHLDEPADKFRMLLFMVRKLYALVAGDCCADNPDSPQHQEILMPGFLYATIIKEK 434

Query: 336  LEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQT 395
            L ++L       + ++        F +   ++ +  K  S  IGT I T L TG L + +
Sbjct: 435  LSEYLDAIATQFRIDMRRQAVGATFEDTKWVRSIFAK-VSPNIGTKISTFLATGNLVSSS 493

Query: 396  GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTP 455
            GLDLQQ +G+T+ AE+LNFLRFIS FR VHRGA FA L+TT+VRKLLPE+WGFLCPVHTP
Sbjct: 494  GLDLQQASGFTIVAEKLNFLRFISHFRCVHRGAFFAELKTTTVRKLLPEAWGFLCPVHTP 553

Query: 456  DGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIG-VGMIPSLPKLVKSGPP 514
            DG PCGLLNH    C + S           S  +T  L  L+  +GM     + + SG  
Sbjct: 554  DGSPCGLLNHFAHKCLLVS-----------SAAKTDHLAGLLSSMGMTQPFERRI-SGKT 601

Query: 515  AVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYL 574
             V  V LDGR++G       E++   LRR K      +P DLEVG VP S GG YPGL+L
Sbjct: 602  NV-CVQLDGRIIGWATPDTCERIAIALRRFKTEGRHKVPRDLEVGLVPPSSGGQYPGLFL 660

Query: 575  FTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHP 634
            F++  + +RPVR ++   EE      IGPFEQV++ I C          A   +H E   
Sbjct: 661  FSTRARMMRPVRLLANGQEEH-----IGPFEQVYLNIAC----TADEIEAGVHSHVEFAA 711

Query: 635  TGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVR 694
            T +LSV+ANLTP+SD+NQSPRNMYQCQM KQTMG    AL  R D KLY +QT QTPIVR
Sbjct: 712  TNVLSVLANLTPFSDYNQSPRNMYQCQMGKQTMGTPSTALTHRTDNKLYRIQTGQTPIVR 771

Query: 695  TNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD 754
               +  YG D YP G NA+VAV++YTGYDMEDAMI+NKS+ +RG  HG +Y++ T++L+ 
Sbjct: 772  PALHDTYGFDGYPNGFNAVVAVISYTGYDMEDAMIINKSAYERGFGHGSVYKSHTLELAS 831

Query: 755  ----DGNKVDRGQKL-FRRNKDAKSLHSV---IDSDGLPYVGQMIHPGEPYCSIYDKTTN 806
                +G+  +RGQ L F    D  + H+    +D  G+P+ G ++  G+ Y + Y+ TT 
Sbjct: 832  AKGAEGSAPNRGQNLIFGFGADVPASHTARQRLDGRGIPHPGMLVRRGDIYAAYYNTTTK 891

Query: 807  SWRTNSRKGSESVFVDYV---AVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGV 863
                +  +  E  ++D V   A ++ +++    K ++  R  R P IGDKFSSRHGQKGV
Sbjct: 892  RTHYDKYESDEEAYIDTVRLIAGNIASNEGKLIKLHLMLRIVRRPEIGDKFSSRHGQKGV 951

Query: 864  CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFA 923
            CSQ +P ID+PFS  +GM+PD+IINPHAFPSRMTI ML+ES+A K G+LHG   DATPF 
Sbjct: 952  CSQRFPAIDLPFS-ESGMQPDVIINPHAFPSRMTIGMLIESLAGKAGALHGFAQDATPFC 1010

Query: 924  NSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQ 983
             S           E  +     GE L+  G+NYHG E +YSG+ G E   +I++G VYYQ
Sbjct: 1011 YS-----------EDDTPQAYFGEQLKAAGYNYHGNEPMYSGITGEEFKADIYLGMVYYQ 1059

Query: 984  RLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHT 1043
            RLRHMVSDK+QVR+TG +D++TRQP+KGRK+GGGIRFGEMERD+LLAHG ++LL DRL  
Sbjct: 1060 RLRHMVSDKYQVRTTGPVDKVTRQPVKGRKKGGGIRFGEMERDALLAHGTSFLLQDRLMN 1119

Query: 1044 CSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQT--------- 1094
            CSDY  A VC  CGS+++  +          + G      P    C  C+          
Sbjct: 1120 CSDYSTAWVCRTCGSLISLGYDDQSYGTEVGLSGDLHESGPNGQYCRVCRAEEIKQKNAW 1179

Query: 1095 -----------------SKG--------METVAMPYVFRYLAAELAAMNIKITLQLG 1126
                              KG        M+ +A+P+VFRYL AELAAM I +++ + 
Sbjct: 1180 LDEQPKLPLVQHRVTAIGKGKVVERRGQMDLIAVPFVFRYLCAELAAMGISLSIDVA 1236


>gi|302693869|ref|XP_003036613.1| hypothetical protein SCHCODRAFT_80314 [Schizophyllum commune H4-8]
 gi|300110310|gb|EFJ01711.1| hypothetical protein SCHCODRAFT_80314 [Schizophyllum commune H4-8]
          Length = 1226

 Score =  882 bits (2278), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/1111 (43%), Positives = 671/1111 (60%), Gaps = 104/1111 (9%)

Query: 72   GQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMV 131
            G  P+M+++ RC+L+G  S +LV+ +EEA E GGYF++NG ER+ R +ILP++N+ +S++
Sbjct: 162  GLVPIMVRSVRCNLRGMSSAQLVAHREEAEEFGGYFVINGNERLIRYLILPRRNHVISLL 221

Query: 132  RSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLK 191
            R SF +R   YT  AV IRCVR DQ+SVT  L+YL NG   L F  + +EY++P+ ++LK
Sbjct: 222  RPSFANRGPSYTPHAVQIRCVRPDQTSVTNTLHYLSNGMAMLRFSWRKQEYVIPIMLILK 281

Query: 192  ALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHI 251
            ALV  +D EIF  +     E          +  +++RV+++L   +  ++ T  QCL+++
Sbjct: 282  ALVGASDKEIFEGVVMQDFE----------NTFLTDRVELLLRSFKAYTMRTGNQCLEYL 331

Query: 252  GEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSD 311
            G+ F+ V++  +  +  AV   ++   + VHL    +K+N+L+FML+KL++LV     +D
Sbjct: 332  GDRFRVVLNLPEDWTNLAVGTWLVNKMVLVHLPTPREKYNMLLFMLRKLYALVSGECCAD 391

Query: 312  NPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVME 371
            NPDS Q+QE+LLPG L  + +KE+ E+ L   +  I  ++ N G   DF +   + KVM 
Sbjct: 392  NPDSPQHQEVLLPGTLYGMIIKERCEEVLNGIRAGIMSDVRN-GVVVDFNDKRYMTKVMS 450

Query: 372  KNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFA 431
            K  S  IG  +   L TG L + TGLDLQQ +G+T+ AE+LN+ R+IS FR +HRGA FA
Sbjct: 451  K-VSFDIGAKLSNFLATGNLVSPTGLDLQQASGFTIVAEKLNWQRYISHFRCIHRGAFFA 509

Query: 432  GLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS 491
             L+TT+VRKLLPE+WGFLCPVHTPDG PCGLLNH++ TCR+ +             +   
Sbjct: 510  ELKTTTVRKLLPEAWGFLCPVHTPDGSPCGLLNHLSRTCRITTT----------PLIVAH 559

Query: 492  ILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV 551
            I  +L   GM  + P   +      + V LDGRV+G    +  +++  +LR  K      
Sbjct: 560  IPALLAAHGM--TQPFAGRINGRTNICVQLDGRVIGWARPAVAQQLANNLRIWKTEGMHE 617

Query: 552  IPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEI 611
            +P DLE+G V  S GG YPGL+LF+S  +F+RPV+   LP+     +   G FEQV+M I
Sbjct: 618  VPMDLEIGLVLESKGGQYPGLFLFSSRSRFMRPVK--YLPNGRDDQV---GSFEQVYMNI 672

Query: 612  RC-PDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFS 670
             C P+  + G       +H E +PT  LS++AN+TP+SD NQSPRN+YQCQM KQTMG  
Sbjct: 673  ACLPEEIEPGV-----TSHVEHNPTNFLSILANMTPFSDFNQSPRNIYQCQMGKQTMGTP 727

Query: 671  VQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMIL 730
              A+  R D KLY LQT Q+PIVR   +  Y +D +P GTNAIVAV++YTGYDMEDAMIL
Sbjct: 728  STAINHRTDNKLYRLQTGQSPIVRPALHNTYAMDAFPNGTNAIVAVISYTGYDMEDAMIL 787

Query: 731  NKSSVDRGMCHGQIYQTETIDLSDDGNKVDR----------GQKLFRRNKDAKSLHSVID 780
            NKS+ +RG  +G +Y++  IDL D                 G+ + R    A +    + 
Sbjct: 788  NKSAHERGFGYGTVYKSAIIDLKDQKGATKSSSAPTLHFGLGKDIRRTGDKAHACTEFVG 847

Query: 781  SDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYV-AVDMKNSKNLPQKAN 839
             DGLP VG  +  G+P  +  +  T   +    KG E+ +VD V  +   N     QK  
Sbjct: 848  EDGLPLVGVKLTAGDPMAAFINDVTGRTQFQKYKGDETAYVDQVRLLGGDNGDTELQKIQ 907

Query: 840  IRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIA 899
            +  R TR+P+IGDKFSSRHGQKGVCSQ WP +DMPFS  +GM+PD+IINPHAFPSRMTI 
Sbjct: 908  VTLRITRSPVIGDKFSSRHGQKGVCSQKWPAVDMPFS-ESGMQPDVIINPHAFPSRMTIG 966

Query: 900  MLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGV 959
            ML+ES+A K G++HG   DATPF  S           E  + VD  G+ L   G+NY+G 
Sbjct: 967  MLVESMAGKAGAMHGLAQDATPFKFS-----------EEDTAVDYFGKQLLAAGYNYYGN 1015

Query: 960  EVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIR 1019
            E +YSG+ G E   +I++G VYYQRLRHMV DKFQVR+TG +D +TRQP+KGRKRGGGIR
Sbjct: 1016 EPMYSGITGQEFAADIYLGVVYYQRLRHMVLDKFQVRTTGQVDPLTRQPVKGRKRGGGIR 1075

Query: 1020 FGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATF--IHPQKRAIREIGG 1077
             GEMERD+L+AHG ++LL DRL  CSDY  A VC  CGS+++  +  +   +R + +   
Sbjct: 1076 LGEMERDALIAHGTSFLLQDRLMNCSDYSTAWVCRTCGSLISLGYDDVALGERVLGKDAS 1135

Query: 1078 LPPARAPKKVTCHACQ-----------------------------------------TSK 1096
              P+  P    C  C+                                           K
Sbjct: 1136 FRPS-GPGGEYCRVCRKAAEEEEERARQNAAAPTDDAPRRPAADVRVAIPSQNVLGTAKK 1194

Query: 1097 G--METVAMPYVFRYLAAELAAMNIKITLQL 1125
            G  ++ VA+PYVFRYL AELA+M I ++L++
Sbjct: 1195 GGDLDVVAVPYVFRYLCAELASMGIGVSLEV 1225


>gi|351699694|gb|EHB02613.1| DNA-directed RNA polymerase I subunit RPA2 [Heterocephalus glaber]
          Length = 1129

 Score =  882 bits (2278), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/1160 (42%), Positives = 681/1160 (58%), Gaps = 112/1160 (9%)

Query: 12   LRELVRHHIESFDYMLDEGLSEMFDHC-------RQAKISYT-------------GKLMA 51
            L+EL R H++SF+Y + EGLS+            +  +IS+T             G +  
Sbjct: 35   LQELTRAHVDSFNYAVCEGLSQAVQAIPSFEFAFKDERISFTIVDAVISPPTVPKGTICK 94

Query: 52   DV-----EFQYLDAGSPV----------VRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
            ++     E   L AG+ +          V ++F  G  P+M+K++ C+L     + L+  
Sbjct: 95   ELSVYPAEEGVLSAGADISWSVNGISRGVIKQF-LGHVPIMVKSKLCNLHNLPPKALIEH 153

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
             EEA EMGGYFI+NG+E+V R +I+P++N+P++++R  ++ R  GYT   V + CVR D 
Sbjct: 154  HEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIALIRPKWKSRGPGYTQFGVSMHCVRGDH 213

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
            S+V + L+YL NG+V L F  + + + LP+G  LKALV  +D +IF  L         KE
Sbjct: 214  SAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELV------KGKE 267

Query: 217  KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
              +     VS+ ++I++ E      +T+ Q L ++GE F+  ++     S     E +  
Sbjct: 268  DDSFFRNSVSQMLRIVMEE----GCSTQKQVLNYLGECFRVKLNLPDWYSNEQATEFLFD 323

Query: 277  DYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
              I +HL  N +K +LL FM +KLF+L     + +NPDSL NQEIL PG L  ++LKEK+
Sbjct: 324  QCICIHLKSNIEKLHLLCFMTRKLFALAKGECMEENPDSLVNQEILTPGQLFLMFLKEKM 383

Query: 337  EDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
            E WL   K  +    +      +  NL  I  +        +    E +L TG L ++TG
Sbjct: 384  EAWLMSIKIALDKRAQKTNVSINTENLMKIFSM-----GGDLTRPFEYLLATGNLRSKTG 438

Query: 397  LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
            L   Q +G  V A++LNF+R++S FR VHRG  FA +RTT+VR+LLPESWGFLCPV+TPD
Sbjct: 439  LGFMQDSGLCVVADKLNFIRYLSHFRCVHRGGDFAKMRTTTVRRLLPESWGFLCPVNTPD 498

Query: 457  GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAV 516
            G PCGL+NH+T+ C V + +             TSI  +L  +G++P     V   P   
Sbjct: 499  GAPCGLMNHLTAICEVVTQF----------AYTTSIPALLCTLGVMP-----VDGTPHCP 543

Query: 517  LS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGA-YPG 571
             S    VLLDG +VG +       +   LRR KV     IP  +EV  VP++   + YPG
Sbjct: 544  YSECYPVLLDGVMVGWVDKELAPGIADSLRRFKVLREKRIPPWMEVALVPITGKSSLYPG 603

Query: 572  LYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEE 631
            L+LFT+P + VRPV+N+ L  EE     LIG  EQ+FM I   +       N    TH+E
Sbjct: 604  LFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQLFMNIAIFEDEVCAGVN----THQE 654

Query: 632  IHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTP 691
            + P  +LSV+AN  P+SDHNQSPRNMYQCQM+KQTMGF +   + R+D KLY LQTPQ+P
Sbjct: 655  LFPHSLLSVIANFIPFSDHNQSPRNMYQCQMSKQTMGFPLLTYQDRSDNKLYRLQTPQSP 714

Query: 692  IVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETID 751
            +VR   Y  Y +D YP GTNAIVAV++YTGYDMEDAMI+NKSS +RG  HG +Y+TE I+
Sbjct: 715  LVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKSSWERGFAHGSVYKTEFIN 774

Query: 752  LSDDGNKVDRGQK--LFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWR 809
            LS+   K  +G    +F        +   +D DGLP++G  +  G+P+    + +T    
Sbjct: 775  LSE---KFKQGADSLVFGVKPGDPRIMQKLDDDGLPFIGAKLQYGDPHYGYLNLSTGESY 831

Query: 810  TNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQLW 868
                K  E+  VD + V   +S +   K   I  R  RNP IGDKF+SRHGQKG+ S+LW
Sbjct: 832  VVYYKSKENCIVDNIKVCSNDSGSGKFKCICITMRVPRNPTIGDKFASRHGQKGILSRLW 891

Query: 869  PDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKK 928
            P  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+A K  +LHG   DATPF  S   
Sbjct: 892  PAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFS--- 947

Query: 929  TNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHM 988
                    E  S ++  GEML+  G+N++G E LYSG+ G EL  +IFIG VYYQRLRHM
Sbjct: 948  --------EENSALEYFGEMLKAAGYNFYGTERLYSGISGVELEADIFIGVVYYQRLRHM 999

Query: 989  VSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYH 1048
            VSDKFQVR+TG  D++T QPI GR   GGIRFGEMERD+LLAHG ++LLHDRL  CSD  
Sbjct: 1000 VSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRS 1059

Query: 1049 VADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP---KKVTCHACQTSKGMETVAMPY 1105
            VA VC  CGS+L+     P           PP+ +    +K  C  C  S  ++TV++PY
Sbjct: 1060 VAHVCVKCGSLLSPLLEKP-----------PPSWSAMRNRKYNCTVCNRSDTIDTVSVPY 1108

Query: 1106 VFRYLAAELAAMNIKITLQL 1125
            VFRY  AELAAMNI++ L +
Sbjct: 1109 VFRYFVAELAAMNIRVKLDV 1128


>gi|410730401|ref|XP_003671380.2| hypothetical protein NDAI_0G03600 [Naumovozyma dairenensis CBS 421]
 gi|401780198|emb|CCD26137.2| hypothetical protein NDAI_0G03600 [Naumovozyma dairenensis CBS 421]
          Length = 1204

 Score =  882 bits (2278), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/1133 (43%), Positives = 689/1133 (60%), Gaps = 113/1133 (9%)

Query: 39   RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
            RQ   SY GKLM  +++  ++ G  V  E  + G  P+ML++ RCHL       LV  KE
Sbjct: 128  RQRLSSYKGKLMLKLKWS-VNNGEEVYSEVRDCGGLPIMLQSNRCHLNKLSPYDLVQHKE 186

Query: 99   EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
            E+ EMGGYFI+NG+E++ R +I+ ++N+PM+++R SF +R   Y+   + +R VR DQ+S
Sbjct: 187  ESDEMGGYFIINGIEKLIRMLIVQRRNHPMAIIRPSFANRGASYSQYGIQLRSVRPDQTS 246

Query: 159  VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKG 218
             T  L+YL +G V   F  +  EYL+PV ++LKAL DT+D EIF+              G
Sbjct: 247  QTNVLHYLNDGQVTFRFSWRKNEYLVPVVMILKALCDTSDREIFD--------------G 292

Query: 219  AVGSPL----VSERVKIILAEVQDL--SLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAE 272
             +GS L    +++R++++L   +    +L  R Q LQ++G+ F+        +S Y V +
Sbjct: 293  IIGSDLKDSFLTDRLELLLRGFKKRYPTLQNRTQVLQYLGDKFRVAFQASPDKSDYEVGQ 352

Query: 273  TVIRDYIFVHLN--DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITI 330
             +I   + VHL   +N DKFN+L+FM++KL+SLV      DNPD+ Q+QE+LL G L  +
Sbjct: 353  ELIDRIVLVHLGKGNNQDKFNMLLFMIRKLYSLVAGECSPDNPDATQHQEVLLGGFLYGM 412

Query: 331  YLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGR 390
             +KEK++++L+     I+ +  N G   +F +   + +V+ +  +  IG+ ++  L TG 
Sbjct: 413  IIKEKIDEYLQNIVAQIRTD-SNRGLAINFKDRKYMARVLMR-VNDNIGSKLQYFLSTGN 470

Query: 391  LATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLC 450
            L +Q+GLDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLC
Sbjct: 471  LVSQSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLC 530

Query: 451  PVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVK 510
            PVHTPDG PCGLLNH    C++++         D S++      +L  +G+ P +  +  
Sbjct: 531  PVHTPDGSPCGLLNHFAHKCKISTQQS------DVSQVPA----LLYSLGVSP-VSHIFA 579

Query: 511  SGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSA-ASVIPDDLEVGYVPLSLGGAY 569
            +GP ++  V +DG+++G +   + + +   LR  KV      +P DLE+GYVP S  G Y
Sbjct: 580  AGP-SLCCVQIDGKIIGWVSHEQGKIIADTLRFWKVEGKVPGLPLDLEIGYVPPSNSGQY 638

Query: 570  PGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPAT 628
            PGLY+F    + +RPV+ + L  E+     ++GPFEQV+M I   P   +         T
Sbjct: 639  PGLYIFGGHSRMMRPVKYLPLDKED-----IVGPFEQVYMNIAVTPQEIENNTH-----T 688

Query: 629  HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTP 688
            H E  PT +LS++ANLTP+SD NQSPRNMYQCQM KQTMG    AL  R+D KLY LQ+ 
Sbjct: 689  HVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQSG 748

Query: 689  QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
            QTPIV+ N Y  YG+D +P GTNA+VAV++YTGYDM+DAMI+NKS+ +RG  +G +Y+ E
Sbjct: 749  QTPIVKANLYDDYGMDNFPNGTNAVVAVISYTGYDMDDAMIINKSADERGFGYGTMYKVE 808

Query: 749  TIDLSDDGNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN 806
             +DLS + ++ D   + F    D   K     +D DGLPY+G  +  G+P C+ +D T N
Sbjct: 809  KVDLSLNRSRGDPITQHFGFGNDEWPKEWLDKLDDDGLPYIGTYVEEGDPICAYFDDTLN 868

Query: 807  SWRTNSRKGSESVFVDYVAV--DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVC 864
              +  +   SE  +++ V +  D  N     Q  +I++R  R P IGDKFSSRHGQKGVC
Sbjct: 869  KTKIKTYHSSEPAYIEEVNLIGDESNKFQELQTVSIKYRIRRTPQIGDKFSSRHGQKGVC 928

Query: 865  SQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFAN 924
            S+ WP IDMPFS  TG++PD+IINPHAFPSRMTI M +ES+A K G+LHG   DATP+  
Sbjct: 929  SRKWPTIDMPFSE-TGIQPDVIINPHAFPSRMTIGMFVESLAGKSGALHGVAHDATPWI- 986

Query: 925  SVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQR 984
                       +E+ +  D  G+ L   G+NYHG E +YSG  G EL  +I+IG VYYQR
Sbjct: 987  ----------FNENDTPADYFGDQLLKAGYNYHGNEPMYSGATGEELRADIYIGVVYYQR 1036

Query: 985  LRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTC 1044
            LRHMV+DKFQVRSTG ++ +T QP+KGRKR GGIR GEMERD+L+ HG ++LL DRL  C
Sbjct: 1037 LRHMVNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIGHGTSFLLQDRLLNC 1096

Query: 1045 SDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHAC------------ 1092
            SDY    VC  CGS+LT       ++++  IG L        V C  C            
Sbjct: 1097 SDYTQTSVCRECGSILTT------QQSVPRIGSL------STVCCRRCAIKFDKAKALLA 1144

Query: 1093 ----------------QTSKGME--------TVAMPYVFRYLAAELAAMNIKI 1121
                            +  +G +        TVA+P+V +YL +EL AM I++
Sbjct: 1145 SQDGDANVFIDDSQIWEDGQGNKFVGGNDTTTVAIPFVLKYLDSELTAMGIRL 1197


>gi|366992025|ref|XP_003675778.1| hypothetical protein NCAS_0C04240 [Naumovozyma castellii CBS 4309]
 gi|342301643|emb|CCC69414.1| hypothetical protein NCAS_0C04240 [Naumovozyma castellii CBS 4309]
          Length = 1201

 Score =  881 bits (2277), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/1133 (43%), Positives = 685/1133 (60%), Gaps = 113/1133 (9%)

Query: 39   RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
            RQ  +SY GKLM  +++   D G     E  + G  PVML++ RCHL      +LV  KE
Sbjct: 125  RQRLVSYKGKLMLKLKWSVND-GEETFTEVRDCGGLPVMLQSNRCHLNKLSPYELVQHKE 183

Query: 99   EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
            E+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R   YT   + +R VR DQ+S
Sbjct: 184  ESDELGGYFIINGIEKLIRMLIVQRRNHPMAIIRPSFTNRGAAYTQFGIQLRSVRPDQTS 243

Query: 159  VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKG 218
             T  L+YL +G V   F  +  EYL+PV ++LKAL DT+D EIF+              G
Sbjct: 244  QTNVLHYLNDGQVTFRFSWRKNEYLVPVVMILKALCDTSDREIFD--------------G 289

Query: 219  AVGSPL----VSERVKIILAEVQDL--SLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAE 272
             +GS L    +++R++++L   +    +L  R Q LQ +G+ F+ V      +S Y V +
Sbjct: 290  IIGSDLHDSFLTDRLELLLRGFKKRYPTLQNRTQVLQFLGDKFRVVFQASPDKSDYEVGQ 349

Query: 273  TVIRDYIFVHLN--DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITI 330
             V+   + VHL   +N DKF +L+FM++KL+SLV      DNPD+ Q+QE+LL G L  +
Sbjct: 350  EVLDRIVLVHLGKGNNEDKFRMLLFMIRKLYSLVAGECSPDNPDATQHQEVLLGGFLYGM 409

Query: 331  YLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGR 390
             +KEK++++L+   + I+ +  N G   +F +   + +V+ +  ++ IG+ ++  L TG 
Sbjct: 410  IIKEKIDEYLQNIIQQIRTD-SNRGLAINFKDRKYMSRVLMR-VNENIGSKLQYFLSTGN 467

Query: 391  LATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLC 450
            L +Q+GLDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLC
Sbjct: 468  LVSQSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLC 527

Query: 451  PVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVK 510
            PVHTPDG PCGLLNH    C++++         D S+    I  +L  +G+ P+   +  
Sbjct: 528  PVHTPDGSPCGLLNHFAHKCKISTQQS------DVSQ----IPGLLYQLGVSPASHTIAA 577

Query: 511  SGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAA-SVIPDDLEVGYVPLSLGGAY 569
               P+   V +DG+++G +   + + +   LR  KV      +P DLE+GYVP S  G Y
Sbjct: 578  G--PSQCCVQIDGKIIGWVSHEQGKIIADTLRFWKVEGKIPGLPLDLEIGYVPPSTRGQY 635

Query: 570  PGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPAT 628
            PGLY+F    + +RPVR + L  E+     ++GPFEQV+M +   P   +         T
Sbjct: 636  PGLYIFGGHSRMMRPVRYLPLDKED-----IVGPFEQVYMNVAVTPQEIENNVH-----T 685

Query: 629  HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTP 688
            H E  PT +LS++ANLTP+SD NQSPRNMYQCQM KQTMG    AL  R+D KLY LQ+ 
Sbjct: 686  HVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQSG 745

Query: 689  QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
            QTPIV+ N Y  YG+D +P GTNA+VAV++YTGYDM+DAMI+NKS+ +RG  +G +Y+ E
Sbjct: 746  QTPIVKANLYDDYGMDNFPNGTNAVVAVISYTGYDMDDAMIINKSADERGFGYGTMYKVE 805

Query: 749  TIDLSDDGNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN 806
             +DLS + ++ D   + F    D   K     +D DGLPY+G  +  G+P C+ +D T N
Sbjct: 806  KVDLSLNRSRGDPITQHFGFGNDEWPKEWLDKLDDDGLPYIGTYVEEGDPICAYFDDTLN 865

Query: 807  SWRTNSRKGSESVFVDYVAV--DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVC 864
              +  +   SE  +++ V +  D  N     Q  +I++R  R P IGDKFSSRHGQKGVC
Sbjct: 866  KTKIKTYHSSEPAYIEEVNLIGDESNKFQELQTVSIKYRIRRTPQIGDKFSSRHGQKGVC 925

Query: 865  SQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFAN 924
            S+ WP +DMPFS  TG++PD+IINPHAFPSRMTI M +ES+A K G+LHG   DATP+  
Sbjct: 926  SRKWPTVDMPFSE-TGIQPDVIINPHAFPSRMTIGMFVESLAGKSGALHGVAQDATPWI- 983

Query: 925  SVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQR 984
                       +E  +  D  G+ L   G+NYHG E +YSG  G EL  +I+IG VYYQR
Sbjct: 984  ----------FNEDDTPADYFGDQLVKAGYNYHGNEPMYSGATGEELRADIYIGVVYYQR 1033

Query: 985  LRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTC 1044
            LRHMV+DKFQVRSTG ++ +T QP+KGRKR GGIR GEMERD+L+ HG ++LL DRL  C
Sbjct: 1034 LRHMVNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIGHGTSFLLQDRLLNC 1093

Query: 1045 SDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQT----SKGM-- 1098
            SDY    VC  CGS+LT       ++++  IG L        V C  C      +K M  
Sbjct: 1094 SDYTQTSVCRECGSILTT------QQSVPRIGSL------STVCCRRCAVRFDEAKSMLA 1141

Query: 1099 ------------------------------ETVAMPYVFRYLAAELAAMNIKI 1121
                                           TVA+P+V +YL +EL AM I++
Sbjct: 1142 KDEETSNVFIDDSEIWEDGQGNKFVGGNDTTTVAIPFVLKYLDSELTAMGIRL 1194


>gi|55728623|emb|CAH91052.1| hypothetical protein [Pongo abelii]
          Length = 1135

 Score =  880 bits (2275), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1161 (42%), Positives = 669/1161 (57%), Gaps = 108/1161 (9%)

Query: 12   LRELVRHHIESFDYMLDEGLS--------------------EMFD--------------- 36
            L+EL R H+ESF+Y + EGL                      + D               
Sbjct: 35   LQELTRAHVESFNYAVHEGLGLAVQAIPPFEFAFKDERISFTILDAVISPPTVPKGTICK 94

Query: 37   -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
                    CR  + +Y GKL AD+ +        ++++    G  P+M+K++ C+L    
Sbjct: 95   EVSVYPAECRGRRCTYRGKLTADISWAVNGISKGIIKQFL--GYVPIMVKSKLCNLYNLP 152

Query: 90   SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
             Q L+   EEA EMGGYFI+NG+E+V R +I+P++N+P++MVR  ++ R  GYT   V +
Sbjct: 153  PQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMVRPKWKTRGPGYTHFGVSM 212

Query: 150  RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
             CVR++ S+V + L+YL NG+V L F  + + + LP+G  LKALV  +D +IF  L    
Sbjct: 213  HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269

Query: 210  DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
                 KE  +     VS+ ++I++ E      +T+ Q L ++GE F+  ++         
Sbjct: 270  ---KGKEDDSFLRNSVSQMLRIVMEE----GCSTQKQVLNYLGECFRVKLNVPDWYPNEQ 322

Query: 270  VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
             AE +    I +HL  N +KF +L  M +KLF+L     + DNPDSL NQE+L PG L  
Sbjct: 323  AAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFL 382

Query: 330  IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
            ++LKEKLE  L   K     + +      +  NL  I  +        +    E +  TG
Sbjct: 383  MFLKEKLEGLLVSIKIAFDKKAQKTNVSMNTDNLMRIFTM-----GIDLTKPFEYLFATG 437

Query: 390  RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
             L ++TGL L Q +G  V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGFL
Sbjct: 438  NLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFL 497

Query: 450  CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
            CPVHTPDGEPCGL+NH+T+ C V + +    +I          L   +GV  I   P   
Sbjct: 498  CPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASI--------PALLCNLGVTPIDGAPHRS 549

Query: 510  KSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGA- 568
             S       VLLDG +VG +       +   LR  KV     IP   EV  +P++   + 
Sbjct: 550  YS---ECYPVLLDGVMVGWVDKELAPGIADSLRHFKVLREKRIPPWTEVVLIPMTGKPSL 606

Query: 569  YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPAT 628
            YPGL+LFT+P + VRPV+N+ L  EE     LIG  EQ+FM +   +        A   T
Sbjct: 607  YPGLFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQIFMNVAIFED----EVFAGVTT 657

Query: 629  HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTP 688
            H+E+ P  +LSV+AN  P+SDHNQSPRNMYQCQM KQTMGF +   + R+D KLY LQTP
Sbjct: 658  HQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTP 717

Query: 689  QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
            Q+P+VR + Y  Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG  HG  Y++E
Sbjct: 718  QSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSAYKSE 777

Query: 749  TIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSW 808
             IDLS+   + D       +  D + L   +D DGLP++G  +  G+PY S  +  T   
Sbjct: 778  FIDLSEKIKQGDSSLVFGMKPGDPRILQK-LDDDGLPFIGAKLQYGDPYYSYLNLNTGES 836

Query: 809  RTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQL 867
                 K  E+  VD +     ++ +   K   I  R  RNP IGDKF+SRHGQKG+ S+L
Sbjct: 837  FVMYYKSKENCVVDNIKACSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRL 896

Query: 868  WPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVK 927
            WP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+A K  +LHG    ATPF  S  
Sbjct: 897  WPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHGATPFIFS-- 953

Query: 928  KTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRH 987
                     E  S ++  GEML+  G+N++G E LYSG+ G EL  +IFIG VYYQRLRH
Sbjct: 954  ---------EENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRH 1004

Query: 988  MVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDY 1047
            MVSDKFQVR+TG  D++T QPI GR   GGIRFGEMERD+LLAHG ++LLHDRL  CSD 
Sbjct: 1005 MVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDR 1064

Query: 1048 HVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP---KKVTCHACQTSKGMETVAMP 1104
             VA VC  CGS+L+     P           PP+ +    +K  C  C  S  ++TV++P
Sbjct: 1065 SVAHVCVKCGSLLSPLLEKP-----------PPSWSAMRNRKYNCTLCNRSDTIDTVSVP 1113

Query: 1105 YVFRYLAAELAAMNIKITLQL 1125
            YVFRY  AELAAMNIK+ L +
Sbjct: 1114 YVFRYFVAELAAMNIKVKLDV 1134


>gi|255718993|ref|XP_002555777.1| KLTH0G17160p [Lachancea thermotolerans]
 gi|238937161|emb|CAR25340.1| KLTH0G17160p [Lachancea thermotolerans CBS 6340]
          Length = 1197

 Score =  880 bits (2274), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/1125 (43%), Positives = 687/1125 (61%), Gaps = 98/1125 (8%)

Query: 39   RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
            RQ   SY GKL+  + +  ++ G     E  + G  PVML++ RCHL      +LV  KE
Sbjct: 122  RQRLSSYRGKLLLKLRWA-INDGEESFTEIRDCGGLPVMLQSNRCHLNKLSPNELVKHKE 180

Query: 99   EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
            E+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R   Y+   + IR VR DQ+S
Sbjct: 181  ESDELGGYFIINGIEKLIRMLIVQRRNHPMAIIRPSFANRGASYSQYGIQIRSVRPDQTS 240

Query: 159  VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKG 218
             T  L+YL +G V   F  +  EYL+PV ++LKAL + ND EIF+              G
Sbjct: 241  QTNVLHYLNDGEVTFRFSWRKNEYLIPVVMILKALCELNDREIFD--------------G 286

Query: 219  AVGS----PLVSERVKIILA--EVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAE 272
             VGS      +++R++++L   + +   L  R Q LQ++G+ F+ V+      + + V E
Sbjct: 287  IVGSDTSNSFLTDRLELLLRGHKKKYGELHNRRQVLQYLGDKFRVVLQASPDATDFQVGE 346

Query: 273  TVIRDYIFVHLNDNN-DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIY 331
             +++  + VHL D+N DK  +L+FM++KL+SLV      DNPD+ Q+QE+LL G L  + 
Sbjct: 347  ELLKRIVLVHLGDSNEDKSRMLLFMIRKLYSLVAGECSPDNPDATQHQEVLLGGFLYGMI 406

Query: 332  LKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRL 391
            +KEK+E++L+  K  IQ ++ N G   +F     + +V+ +  ++ IG+ ++  L TG L
Sbjct: 407  IKEKIEEYLQNIKLQIQSDV-NRGLAVNFKERKYMTRVLMR-VNENIGSKLQYFLSTGNL 464

Query: 392  ATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCP 451
             +Q+GLDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCP
Sbjct: 465  VSQSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCP 524

Query: 452  VHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKS 511
            VHTPDG PCGLLNH    C++++   S+ ++       + I  +L  +G+ P+       
Sbjct: 525  VHTPDGSPCGLLNHFAHKCKIST---SQSDV-------SRIPSLLYSLGVAPASHTFTAG 574

Query: 512  GPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV-IPDDLEVGYVPLSLGGAYP 570
              P +  V LDG++VG     + + +   LR  KV   +  +P DLE+GYVP S  G YP
Sbjct: 575  --PTMCCVQLDGKIVGWCSHEQGKIIADTLRFWKVEGETPGLPLDLEIGYVPPSSRGQYP 632

Query: 571  GLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHE 630
            GLYLF    + +RPV+ + L  E+     ++GPFEQV+M I           +    TH 
Sbjct: 633  GLYLFGGHSRMMRPVKYLPLGKED-----IVGPFEQVYMNIAVTPKEIQNNTH----THV 683

Query: 631  EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQT 690
            E  PT +LS++ANLTP+SD NQSPRNMYQCQM KQTMG    AL  R+D KLY LQT QT
Sbjct: 684  EFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQTGQT 743

Query: 691  PIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETI 750
            PIV+ N Y +YG+D +P G NA+VAV++YTGYDM+DAMI+NKS+ +RG+ +G +Y+ E +
Sbjct: 744  PIVKANLYDEYGMDNFPNGFNAVVAVISYTGYDMDDAMIINKSADERGLGYGTMYKVEKV 803

Query: 751  DLSDDGNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSW 808
            DL+ + ++ D   + F    D   K+    +D DGLP +G  +  G+P C+ +D T N  
Sbjct: 804  DLALNRSRGDPITQHFGFGDDEWPKNWLDKLDDDGLPMIGTYVEEGDPICAFFDDTLNKT 863

Query: 809  RTNSRKGSESVFVDYVAVDMKNSKNLP--QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQ 866
            +  +   SE  +++ V +    S      Q  +I++R  R P IGDKFSSRHGQKGVCS+
Sbjct: 864  KIKTYHSSEPAYIEEVNLIGDESSKFQELQTVSIKYRIRRTPQIGDKFSSRHGQKGVCSR 923

Query: 867  LWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSV 926
             WP +DMPFS  +GM+PD+IINPHAFPSRMTI M +ES+A K G+LHG   DATP+  + 
Sbjct: 924  KWPTVDMPFS-ESGMQPDIIINPHAFPSRMTIGMFVESLAGKAGALHGMAHDATPWTFTE 982

Query: 927  KKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLR 986
            + T  D             GE L   G+NYHG E +YSG  G EL  +I+IG VYYQRLR
Sbjct: 983  EDTPADC-----------FGEQLLQAGYNYHGNEPMYSGATGQELRADIYIGVVYYQRLR 1031

Query: 987  HMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSD 1046
            HMV+DKFQVRSTG ++ +T QP+KGRKR GGIR GEMERD+L+ HG ++LL DRL  CSD
Sbjct: 1032 HMVNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIGHGTSFLLQDRLLNCSD 1091

Query: 1047 YHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARA---------PKKVT--------- 1088
            Y    VC  CGS+LT  +  P+      IG L   R           K+V          
Sbjct: 1092 YTQTAVCRECGSLLTTHYSVPR------IGSLATVRCRRCAVKFEDAKRVVSKYQGDEQI 1145

Query: 1089 ----CHACQTSKGME--------TVAMPYVFRYLAAELAAMNIKI 1121
                 H  +  +G +        TVA+P+V +YL +ELAAM IK+
Sbjct: 1146 FIDDSHIWEDGQGNKFVGGGQTTTVAIPFVLKYLDSELAAMGIKL 1190


>gi|336465559|gb|EGO53799.1| DNA-directed RNA polymerase I subunit RPA2 [Neurospora tetrasperma
            FGSC 2508]
 gi|350295141|gb|EGZ76118.1| DNA-directed RNA polymerase I subunit RPA2 [Neurospora tetrasperma
            FGSC 2509]
          Length = 1234

 Score =  879 bits (2270), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/1151 (43%), Positives = 686/1151 (59%), Gaps = 121/1151 (10%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSP--VVRERFNFGQFPVMLKTRRCHLQGADSQKLV 94
             CR+  +SY GKL A  E++ ++ G P   VRE    GQ P+M+K+ +CHLQ     +LV
Sbjct: 120  ECRERHVSYRGKLSATFEYR-INDGEPHEFVRE---LGQMPIMVKSNKCHLQNNSPAQLV 175

Query: 95   SLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRK 154
            + KEE+ E+GGYFI+NG+E++ R ++L ++N+P+++VR SF++R   YT   +++R VR 
Sbjct: 176  ARKEESEELGGYFIVNGIEKLIRMLLLNRRNFPLAIVRPSFQNRGASYTPYGIIMRSVRP 235

Query: 155  DQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYK 214
            D++S T  L+YL +G+V   F  +  EYL+PV +++KALV+TND EIF  L      K  
Sbjct: 236  DETSQTNVLHYLSDGNVTFRFSWRKNEYLIPVMMIMKALVETNDREIFEGLVGPPQSK-- 293

Query: 215  KEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETV 274
                 V +  +++RV+++L   +   L ++ Q   ++G+ F+ V+    + S Y V    
Sbjct: 294  ----GVANTFLTDRVELLLRTYKKYGLYSKTQTRAYLGQKFRVVLGVPDTMSDYEVGTEF 349

Query: 275  IRDYIFVHL-------NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
            +R  + VHL         + DKFN+L+FM +KL++LV      DNPD++QNQEILL G L
Sbjct: 350  LRKIVLVHLGCQDVTEQQDADKFNMLLFMCRKLYALVAGDCAVDNPDAVQNQEILLGGFL 409

Query: 328  ITIYLKEKLEDWLRKG-KKLIQDEIENNGK---KFDFFNLANIKKVMEKNPSKQIGTSIE 383
                +KE+LE+ L    +  ++D +  N     + D F L +    + +  ++ IG S+E
Sbjct: 410  YGQIIKERLEELLTVSFRASLRDYLRRNPTVSFQSDTF-LKDFPIAIFRRANENIGQSLE 468

Query: 384  TMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLP 443
              L TG L + +GLDLQQ +G+TV AE+LNFLRFIS FR VHRG+ FA L+TT+VRKLLP
Sbjct: 469  YFLSTGNLVSPSGLDLQQVSGFTVVAEKLNFLRFISHFRMVHRGSFFAQLKTTTVRKLLP 528

Query: 444  ESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP 503
            ESWGFLCPVHTPDG PCGLLNH+   C++ +           S   ++I R+   +G++ 
Sbjct: 529  ESWGFLCPVHTPDGSPCGLLNHLAHKCKIMTE----------SVDASTIPRLAFELGVV- 577

Query: 504  SLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL 563
                +  +     + V+LDGR+VG     E + +   LR  KV+  + +P  LE+GYVP 
Sbjct: 578  ---NISSAATSESVVVMLDGRIVGWCTPEECKSIAETLRYWKVNGENGVPLQLEIGYVPP 634

Query: 564  SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRN 623
            S GG+YPGLY+ + P + VRPV+ + L  E+      +GP EQ +M I C +      + 
Sbjct: 635  SNGGSYPGLYMSSQPARMVRPVKYLPLQKED-----FVGPQEQPYMSIACTE------QE 683

Query: 624  AFP--ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQK 681
              P  +TH E  PT +LS++AN+TP+SD NQSPRNMYQCQM KQTMG    AL  R D K
Sbjct: 684  VIPGDSTHVEFDPTNILSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPATALAHRTDNK 743

Query: 682  LYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCH 741
            +Y LQT QTP+VR   +  YG D +P G NA+VAV++YTGYDM+DAMILNKS+ +RG  H
Sbjct: 744  MYRLQTGQTPVVRAPLHNTYGFDNFPNGMNAVVAVISYTGYDMDDAMILNKSAHERGFGH 803

Query: 742  GQIYQTETIDLSDDGNKVDRGQ--KLFRRNKDA---KSLHSVIDSDGLPYVGQMIHPGEP 796
            G IY+T+ + L DD          K+F    ++   +S   ++D+DGLP VG+++  G+ 
Sbjct: 804  GSIYKTKKVSLKDDSRTRSAKSIVKMFGFAPNSTIRESTRDMLDNDGLPRVGRLLREGDV 863

Query: 797  YCSIY-------------DKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRF 842
             C+ +             D  T+  R    K SE  FV+ V V   ++   P Q  +I+ 
Sbjct: 864  ICAWHTVSADYNGQLVNRDGVTHYERY---KDSEDAFVEEVRVIGADNGTEPLQTVSIKL 920

Query: 843  RHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLL 902
            R  R+P+IGDKFSSRHGQKGV SQ WP  DMPFS  TG++PD+IINPHAFPSRMTI M +
Sbjct: 921  RIPRSPVIGDKFSSRHGQKGVLSQKWPATDMPFSE-TGIQPDVIINPHAFPSRMTIGMFV 979

Query: 903  ESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVL 962
            ES+A K G+LHG   D+TPF             DE  +  D  G  L   G+NYHG E L
Sbjct: 980  ESLAGKAGALHGLAQDSTPFK-----------FDEQNTAGDYFGHQLMKAGYNYHGNEPL 1028

Query: 963  YSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGE 1022
            YSG+ G E   +I+IG VYYQRLRHMV+DK+QVR+TG +   T QPIKGRK+GGGIR GE
Sbjct: 1029 YSGITGEEFQADIYIGVVYYQRLRHMVNDKYQVRTTGPVVPTTGQPIKGRKKGGGIRVGE 1088

Query: 1023 MERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPAR 1082
            MERD+LLAHG ++LL DRL  CSDY  + +C  CGS     F+  Q      IG     +
Sbjct: 1089 MERDALLAHGTSFLLQDRLLNCSDYSKSWMCRQCGS-----FLSTQPTVSPFIG---KRK 1140

Query: 1083 APKKVTCHAC--------------------------QTSKGMET--VAMPYVFRYLAAEL 1114
            A   V C  C                          Q   G  T  VA+P   +YL  EL
Sbjct: 1141 AVSTVRCRNCAVRLDDMEDVDLMQIDGEIWEDGSGTQWIGGENTTIVAVPGALKYLDVEL 1200

Query: 1115 AAMNIKITLQL 1125
            AAM IK+  ++
Sbjct: 1201 AAMGIKLKYKV 1211


>gi|3668171|dbj|BAA33445.1| RNA polymerase I second-largest subunit [Neurospora crassa]
          Length = 1234

 Score =  878 bits (2269), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/1151 (43%), Positives = 687/1151 (59%), Gaps = 121/1151 (10%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSP--VVRERFNFGQFPVMLKTRRCHLQGADSQKLV 94
             CR+  +SY GKL A  E++ ++ G P   VRE    GQ P+M+K+ +CHLQ     +LV
Sbjct: 120  ECRERHVSYRGKLSATFEYR-INDGEPHEFVRE---LGQMPIMVKSNKCHLQNNSPAQLV 175

Query: 95   SLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRK 154
            + KEE+ E+GGYFI+NG+E++ R +++ ++N+P+++VR SF++R   YT   +++R VR 
Sbjct: 176  ARKEESEELGGYFIVNGIEKLIRMLLVNRRNFPLAIVRPSFQNRGASYTPYGIIMRSVRP 235

Query: 155  DQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYK 214
            D++S T  L+YL +G+V   F  +  EYL+PV +++KALV+TND EIF  L      K  
Sbjct: 236  DETSQTNVLHYLSDGNVTFRFSWRKNEYLIPVMMIMKALVETNDREIFEGLVGPPQSK-- 293

Query: 215  KEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETV 274
                A  +P +++RV+++L   +   L ++ Q   ++G+ F+ V+    + S Y V    
Sbjct: 294  ----ASPTPSLTDRVELLLRTYKKYGLYSKTQTRAYLGQKFRVVLGVPDTMSDYEVGTEF 349

Query: 275  IRDYIFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
            +R  + VHL   +       DKFN+L+FM +KL++LV      DNPD++QNQEILL G L
Sbjct: 350  LRKIVLVHLGSQDVTEQQDADKFNMLLFMCRKLYALVAGDCAVDNPDAVQNQEILLGGFL 409

Query: 328  ITIYLKEKLEDWLRKG-KKLIQDEIENNGK---KFDFFNLANIKKVMEKNPSKQIGTSIE 383
                +KE+LE+ L    +  ++D +  N     + D F L +    + +  ++ IG S+E
Sbjct: 410  YGQIIKERLEELLTVSFRASLRDYLRRNPTVSFQSDTF-LKDFPIAIFRRANENIGQSLE 468

Query: 384  TMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLP 443
              L TG L + +GLDLQQ +G+TV AE+LNFLRFIS FR VHRG+ FA L+TT+VRKLLP
Sbjct: 469  YFLSTGNLVSPSGLDLQQVSGFTVVAEKLNFLRFISHFRMVHRGSFFAQLKTTTVRKLLP 528

Query: 444  ESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP 503
            ESWGFLCPVHTPDG PCGLLNH+   C++ +           S   ++I R+   +G++ 
Sbjct: 529  ESWGFLCPVHTPDGSPCGLLNHLAHKCKIMTE----------SVDASTISRLAFELGVV- 577

Query: 504  SLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL 563
                +  +     + V+LDGR+VG     E + +   LR  KV+  + +P  LE+GYVP 
Sbjct: 578  ---NISSAATSESVVVMLDGRIVGWCTPEECKSIAETLRYWKVNGENGVPLQLEIGYVPP 634

Query: 564  SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRN 623
            S GG+YPGLY+ + P + VRPV+ + L  E+      +GP EQ +M I C +      + 
Sbjct: 635  SNGGSYPGLYMSSQPARMVRPVKYLPLQKED-----FVGPQEQPYMSIACTE------QE 683

Query: 624  AFP--ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQK 681
              P  +TH E  PT +LS++AN+TP+SD NQSPRNMYQCQM KQTMG    AL  R D K
Sbjct: 684  VIPGDSTHVEFDPTNILSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPATALAHRTDNK 743

Query: 682  LYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCH 741
            +Y LQT QTP+VR   +  YG D +P G NA+VAV++YTGYDM+DAMILNKS+ +RG  H
Sbjct: 744  MYRLQTGQTPVVRAPLHNTYGFDNFPNGMNAVVAVISYTGYDMDDAMILNKSAHERGFGH 803

Query: 742  GQIYQTETIDLSDDGNKVDRGQ--KLFRRNKDA---KSLHSVIDSDGLPYVGQMIHPGEP 796
            G IY+T+ + L DD          K+F    ++   +S   ++D+DGLP VG+++  G+ 
Sbjct: 804  GSIYKTKKVSLKDDSRTRSAKSIVKMFGFAPNSTIRESTRDMLDNDGLPRVGRLLREGDV 863

Query: 797  YCSIY-------------DKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRF 842
             C+ +             D  T+  R    K SE  FV+ V V   ++   P Q  +I+ 
Sbjct: 864  ICAWHTVSADYNGQLVNRDGVTHYERY---KDSEDAFVEEVRVIGADNGTEPLQTVSIKL 920

Query: 843  RHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLL 902
            R  R+P+IGDKFSSRHGQKGV SQ WP  DMPFS  TG++PD+IINPHAFPSRMTI M +
Sbjct: 921  RIPRSPVIGDKFSSRHGQKGVLSQKWPATDMPFSE-TGIQPDVIINPHAFPSRMTIGMFV 979

Query: 903  ESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVL 962
            ES+A K G+LHG   D+TPF             DE  +  D  G  L   G+NYHG E L
Sbjct: 980  ESLAGKAGALHGLAQDSTPFK-----------FDEQNTAGDYFGHQLMKAGYNYHGNEPL 1028

Query: 963  YSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGE 1022
            YSG+ G E   +I+IG VYYQRLRHMV+DK+QVR+TG +   T QPIKGRK+GGGIR GE
Sbjct: 1029 YSGITGEEFQADIYIGVVYYQRLRHMVNDKYQVRTTGPVVPTTGQPIKGRKKGGGIRVGE 1088

Query: 1023 MERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPAR 1082
            MERD+LLAHG ++LL DRL  CSDY  + +C  CGS     F+  Q      IG     +
Sbjct: 1089 MERDALLAHGTSFLLQDRLLNCSDYSKSWMCRQCGS-----FLSTQPTVSPFIG---KRK 1140

Query: 1083 APKKVTCHAC--------------------------QTSKGMET--VAMPYVFRYLAAEL 1114
            A   V C  C                          Q   G  T  VA+P   +YL  EL
Sbjct: 1141 AVSTVRCRNCAVRLDDMEDVDLMQIDGEIWEDGSGTQWIGGENTTIVAVPGALKYLDVEL 1200

Query: 1115 AAMNIKITLQL 1125
            AAM IK+  ++
Sbjct: 1201 AAMGIKLKYKV 1211


>gi|310793783|gb|EFQ29244.1| RNA polymerase Rpb2 [Glomerella graminicola M1.001]
          Length = 1225

 Score =  878 bits (2268), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/1138 (42%), Positives = 685/1138 (60%), Gaps = 97/1138 (8%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSP--VVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
            CR+   +Y G+L A  E++ ++ G P   VRE    GQ P+M+K+ RCHL+G    +LV 
Sbjct: 117  CRERHCTYRGRLSATFEYR-INDGDPKEFVRE---LGQVPIMVKSNRCHLEGNSPAQLVQ 172

Query: 96   LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
             KEE+ E+GGYFI+NG+E++ R + + ++N+PM++ R SF++R +GYT   +++R VR D
Sbjct: 173  RKEESEELGGYFIVNGIEKIIRMLQVNRRNFPMAINRPSFQNRGQGYTPYGIILRSVRPD 232

Query: 156  QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
            ++S T  L+YL +G++   F  +  EYL+PV ++LK+LV+TND EIF  L      K  K
Sbjct: 233  ETSQTNVLHYLSDGNMTFRFSWRKNEYLVPVMMILKSLVETNDREIFEGLIGLSGSKSSK 292

Query: 216  EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
                  +  +++RV+++L   +   L ++ +   ++GE F+ V+    + S Y V    +
Sbjct: 293  ------NTFLTDRVELLLRTYKSYCLYSKTETRAYLGEKFRVVLGVPDTMSNYDVGTEFL 346

Query: 276  RDYIFVHL-------NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
            R  + VHL        ++NDKF +L+FM++KL++LV      DNPD++QNQE+LL G L 
Sbjct: 347  RKIVLVHLGNINVTEKEDNDKFRMLLFMIRKLYALVAGDCSVDNPDAVQNQEVLLGGFLY 406

Query: 329  TIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKV---MEKNPSKQIGTSIETM 385
             + LKE+LE++L    +L   E         F +    K+    + ++ ++ +G  +E  
Sbjct: 407  GMILKERLEEFLTTAVRLSLREWTRKHPATPFTSQDFAKEFPANIFRHANENLGNGLEYF 466

Query: 386  LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
            L TG L + +GLDLQQ AG+TV AE+LNFLRF+S FR +HRGA FA L+TT+VRKLLPES
Sbjct: 467  LSTGNLTSPSGLDLQQTAGFTVVAEKLNFLRFLSHFRMIHRGAFFAELKTTTVRKLLPES 526

Query: 446  WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
            WGF+CPVHTPDG PCGLLNH+   C++ +         D SK+           G++  L
Sbjct: 527  WGFMCPVHTPDGAPCGLLNHLAHKCKIMT------EAVDASKI----------PGLVAEL 570

Query: 506  PKLVKSGPPAVLSV--LLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL 563
              +  S      SV  +LDGR+VG     E  ++   LR  KV     +P  LEVGYVP 
Sbjct: 571  GAVETSSAATDESVVIMLDGRIVGFCTPRESLRIADTLRYWKVEGTHGVPLQLEVGYVPP 630

Query: 564  SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRN 623
            S GG+YPG+YL ++P + VRPV+ + L  E+      +GP EQ +M I   +        
Sbjct: 631  SNGGSYPGIYLASAPARMVRPVKYLPLDKED-----FVGPHEQPYMSIAVVED----EIV 681

Query: 624  AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
            +  +TH E  PT MLS++AN+TP+SD NQSPRNMYQCQM KQTMG    AL++R D K+Y
Sbjct: 682  SGESTHVEFTPTNMLSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPATALRYRTDNKMY 741

Query: 684  HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
             LQ+ QTP+VR+  +  YG D +P G NA+VAV++YTGYDM+DAMILNKS+ +RG  HG 
Sbjct: 742  RLQSGQTPVVRSPLHNAYGFDNFPNGFNAVVAVISYTGYDMDDAMILNKSAHERGFGHGT 801

Query: 744  IYQTETIDLSDDG--NKVDRGQKLFRRNKDA---KSLHSVIDSDGLPYVGQMIHPGEPYC 798
            IY+T+ I L D+     V    KLF               +D DGLPYVG+++  G+  C
Sbjct: 802  IYKTKKITLKDESRTRSVKNISKLFGFAPGGFVKGHYRGQLDEDGLPYVGRLVQEGDVLC 861

Query: 799  SIYDKTTN----------SWRTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRN 847
            + +  + +                 K SE+ FV+ V V    + N P Q  +I+ R  R+
Sbjct: 862  AWHTVSADYSGKLVNLDGQTHYEKYKDSETAFVEEVRVIGSETGNEPAQTISIKLRVPRS 921

Query: 848  PIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAA 907
            P+IGDKFSSRHGQKGV SQ WP +DMPFS  +GM+PD+IINPHAFPSRMTI M +ES+A 
Sbjct: 922  PVIGDKFSSRHGQKGVASQKWPAVDMPFS-ESGMQPDVIINPHAFPSRMTIGMFVESLAG 980

Query: 908  KGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVY 967
            K G+LHG   D+TPF             +E  +  D  G  L   G+NYHG E +YSG+ 
Sbjct: 981  KAGALHGLAQDSTPFK-----------FNEENTAADYFGHQLMKAGYNYHGNEPMYSGIT 1029

Query: 968  GTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDS 1027
            G EL  +I++G VYYQRLRHMV+DK+QVR+TG +   T QPIKGRKRGGGIR GEMERD+
Sbjct: 1030 GEELAADIYVGVVYYQRLRHMVNDKYQVRTTGPVVPTTGQPIKGRKRGGGIRVGEMERDA 1089

Query: 1028 LLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLT-----ATFIHPQKR--AIREIGGLPP 1080
            LLAHG A+LL DRL  CSDY  + +C  CGS L+     + F+  +K+   +R      P
Sbjct: 1090 LLAHGTAFLLQDRLLNCSDYTRSWICRSCGSFLSVQPTVSPFVGKKKQVTTVRCRNCAVP 1149

Query: 1081 -----ARAPKKVTCHACQTSKGME--------TVAMPYVFRYLAAELAAMNIKITLQL 1125
                 A +  KV     +  +G +         V +P   ++L  ELAAM +K+  ++
Sbjct: 1150 IDAGDAESAAKVEGEIWEDGQGNQWVGGENTTVVVVPGALKFLDVELAAMGVKLKYRV 1207


>gi|85115172|ref|XP_964824.1| DNA-directed RNA polymerase I 135 kDa polypeptide [Neurospora crassa
            OR74A]
 gi|51704242|sp|O74633.2|RPA2_NEUCR RecName: Full=DNA-directed RNA polymerase I subunit RPA2; AltName:
            Full=DNA-directed RNA polymerase I polypeptide 2;
            Short=RNA polymerase I subunit 2
 gi|28926619|gb|EAA35588.1| DNA-directed RNA polymerase I 135 kDa polypeptide [Neurospora crassa
            OR74A]
          Length = 1234

 Score =  878 bits (2268), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1151 (42%), Positives = 686/1151 (59%), Gaps = 121/1151 (10%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSP--VVRERFNFGQFPVMLKTRRCHLQGADSQKLV 94
             CR+  +SY GKL A  E++ ++ G P   VRE    GQ P+M+K+ +CHLQ     +LV
Sbjct: 120  ECRERHVSYRGKLSATFEYR-INDGEPHEFVRE---LGQMPIMVKSNKCHLQNNSPAQLV 175

Query: 95   SLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRK 154
            + KEE+ E+GGYFI+NG+E++ R +++ ++N+P+++VR SF++R   YT   +++R VR 
Sbjct: 176  ARKEESEELGGYFIVNGIEKLIRMLLVNRRNFPLAIVRPSFQNRGASYTPYGIIMRSVRP 235

Query: 155  DQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYK 214
            D++S T  L+YL +G+V   F  +  EYL+PV +++KALV+TND EIF  L      K  
Sbjct: 236  DETSQTNVLHYLSDGNVTFRFSWRKNEYLIPVMMIMKALVETNDREIFEGLVGPPQSK-- 293

Query: 215  KEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETV 274
                 V +  +++RV+++L   +   L ++ Q   ++G+ F+ V+    + S Y V    
Sbjct: 294  ----GVANTFLTDRVELLLRTYKKYGLYSKTQTRAYLGQKFRVVLGVPDTMSDYEVGTEF 349

Query: 275  IRDYIFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
            +R  + VHL   +       DKFN+L+FM +KL++LV      DNPD++QNQEILL G L
Sbjct: 350  LRKIVLVHLGSQDVTEQQDADKFNMLLFMCRKLYALVAGDCAVDNPDAVQNQEILLGGFL 409

Query: 328  ITIYLKEKLEDWLRKG-KKLIQDEIENNGK---KFDFFNLANIKKVMEKNPSKQIGTSIE 383
                +KE+LE+ L    +  ++D +  N     + D F L +    + +  ++ IG S+E
Sbjct: 410  YGQIIKERLEELLTVSFRASLRDYLRRNPTVSFQSDTF-LKDFPIAIFRRANENIGQSLE 468

Query: 384  TMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLP 443
              L TG L + +GLDLQQ +G+TV AE+LNFLRFIS FR VHRG+ FA L+TT+VRKLLP
Sbjct: 469  YFLSTGNLVSPSGLDLQQVSGFTVVAEKLNFLRFISHFRMVHRGSFFAQLKTTTVRKLLP 528

Query: 444  ESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP 503
            ESWGFLCPVHTPDG PCGLLNH+   C++ +           S   ++I R+   +G++ 
Sbjct: 529  ESWGFLCPVHTPDGSPCGLLNHLAHKCKIMTE----------SVDASTISRLAFELGVV- 577

Query: 504  SLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL 563
                +  +     + V+LDGR+VG     E + +   LR  KV+  + +P  LE+GYVP 
Sbjct: 578  ---NISSAATSESVVVMLDGRIVGWCTPEECKSIAETLRYWKVNGENGVPLQLEIGYVPP 634

Query: 564  SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRN 623
            S GG+YPGLY+ + P + VRPV+ + L  E+      +GP EQ +M I C +      + 
Sbjct: 635  SNGGSYPGLYMSSQPARMVRPVKYLPLQKED-----FVGPQEQPYMSIACTE------QE 683

Query: 624  AFP--ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQK 681
              P  +TH E  PT +LS++AN+TP+SD NQSPRNMYQCQM KQTMG    AL  R D K
Sbjct: 684  VIPGDSTHVEFDPTNILSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPATALAHRTDNK 743

Query: 682  LYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCH 741
            +Y LQT QTP+VR   +  YG D +P G NA+VAV++YTGYDM+DAMILNKS+ +RG  H
Sbjct: 744  MYRLQTGQTPVVRAPLHNTYGFDNFPNGMNAVVAVISYTGYDMDDAMILNKSAHERGFGH 803

Query: 742  GQIYQTETIDLSDDGNKVDRGQ--KLFRRNKDA---KSLHSVIDSDGLPYVGQMIHPGEP 796
            G IY+T+ + L DD          K+F    ++   +S   ++D+DGLP VG+++  G+ 
Sbjct: 804  GSIYKTKKVSLKDDSRTRSAKSIVKMFGFAPNSTIRESTRDMLDNDGLPRVGRLLREGDV 863

Query: 797  YCSIY-------------DKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRF 842
             C+ +             D  T+  R    K SE  FV+ V V   ++   P Q  +I+ 
Sbjct: 864  ICAWHTVSADYNGQLVNRDGVTHYERY---KDSEDAFVEEVRVIGADNGTEPLQTVSIKL 920

Query: 843  RHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLL 902
            R  R+P+IGDKFSSRHGQKGV SQ WP  DMPFS  TG++PD+IINPHAFPSRMTI M +
Sbjct: 921  RIPRSPVIGDKFSSRHGQKGVLSQKWPATDMPFSE-TGIQPDVIINPHAFPSRMTIGMFV 979

Query: 903  ESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVL 962
            ES+A K G+LHG   D+TPF             DE  +  D  G  L   G+NYHG E L
Sbjct: 980  ESLAGKAGALHGLAQDSTPFK-----------FDEQNTAGDYFGHQLMKAGYNYHGNEPL 1028

Query: 963  YSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGE 1022
            YSG+ G E   +I+IG VYYQRLRHMV+DK+QVR+TG +   T QPIKGRK+GGGIR GE
Sbjct: 1029 YSGITGEEFQADIYIGVVYYQRLRHMVNDKYQVRTTGPVVPTTGQPIKGRKKGGGIRVGE 1088

Query: 1023 MERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPAR 1082
            MERD+LLAHG ++LL DRL  CSDY  + +C  CGS     F+  Q      IG     +
Sbjct: 1089 MERDALLAHGTSFLLQDRLLNCSDYSKSWMCRQCGS-----FLSTQPTVSPFIG---KRK 1140

Query: 1083 APKKVTCHAC--------------------------QTSKGMET--VAMPYVFRYLAAEL 1114
            A   V C  C                          Q   G  T  VA+P   +YL  EL
Sbjct: 1141 AVSTVRCRNCAVRLDDMEDVDLMQIDGEIWEDGSGTQWIGGENTTIVAVPGALKYLDVEL 1200

Query: 1115 AAMNIKITLQL 1125
            AAM IK+  ++
Sbjct: 1201 AAMGIKLKYKV 1211


>gi|336265681|ref|XP_003347611.1| hypothetical protein SMAC_04919 [Sordaria macrospora k-hell]
 gi|380096478|emb|CCC06526.1| unnamed protein product [Sordaria macrospora k-hell]
          Length = 1239

 Score =  877 bits (2267), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/1158 (42%), Positives = 680/1158 (58%), Gaps = 135/1158 (11%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSP--VVRERFNFGQFPVMLKTRRCHLQGADSQKLV 94
             CR+  +SY GKL A  E++ ++ G P   VRE    GQ P+M+K+ +CHLQ     +LV
Sbjct: 121  ECRERHVSYRGKLSATFEYR-INDGEPHEFVRE---LGQMPIMVKSNKCHLQNNSPAQLV 176

Query: 95   SLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRK 154
            +  EE+ E+GGYF++NG+E++ R +++ ++N+P+++VR SF++R   YT   +++R VR 
Sbjct: 177  ARGEESEELGGYFVVNGIEKLIRMLLMNRRNFPLAIVRPSFQNRGATYTPYGIIMRSVRP 236

Query: 155  DQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYK 214
            D++S T  L+YL +G+V   F  +  EYL+PV +++KALV+TND EIF  L      K  
Sbjct: 237  DETSQTNVLHYLSDGNVTFRFSWRKNEYLIPVMMIMKALVETNDREIFEGLVGPPQSK-- 294

Query: 215  KEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETV 274
                 V +  +++RV+++L   +   L ++ Q   ++G+ F+ V+    + S Y V    
Sbjct: 295  ----GVANTFLTDRVELLLRTYKKYGLYSKTQTRAYLGQKFRVVLGVADTMSDYEVGTEF 350

Query: 275  IRDYIFVHL-------NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
            +R  + VHL         + DKFN+L+FM +KL++LV      DNPD++QNQEILL G L
Sbjct: 351  LRKIVLVHLGCQDVTEQQDADKFNMLLFMCRKLYALVAGDCAVDNPDAVQNQEILLGGFL 410

Query: 328  ITIYLKEKLE------------DWLRKGKKL-IQDEIENNGKKFDFFNLANIKKVMEKNP 374
                +KE+LE            D+LR+   +  Q E          F  AN         
Sbjct: 411  YGQIIKERLEELLTVSFRASLRDYLRRNPTVSFQSETFTKDFPIAIFRRAN--------- 461

Query: 375  SKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLR 434
             + IG S+E  L TG L + +GLDLQQ +G+TV AE+LNFLRFIS FR VHRG+ FA L+
Sbjct: 462  -ENIGQSLEYFLSTGNLVSPSGLDLQQVSGFTVVAEKLNFLRFISHFRMVHRGSFFAQLK 520

Query: 435  TTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVAS-YYDSRGNIRDFSKMRTSIL 493
            TT+VRKLLPESWGFLCPVHTPDG PCGLLNH+   C++ + + D+           ++I 
Sbjct: 521  TTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLAHKCKIMTDHVDA-----------STIP 569

Query: 494  RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIP 553
            R+   +G++     +  +     + V+LDGR+VG     E + +   LR  KV+  + +P
Sbjct: 570  RLAFELGVV----NISSAATSESVVVMLDGRIVGWCTPDECKSIAETLRYWKVNGENGVP 625

Query: 554  DDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC 613
              LE+GYVP S GG+YPGLY+ + P + VRPV+ + L  E+      +GP EQ +M I C
Sbjct: 626  LQLEIGYVPPSNGGSYPGLYMSSQPARMVRPVKYLPLAKED-----FVGPQEQPYMSIAC 680

Query: 614  PDGGDGGRRNAFP--ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSV 671
             +      +   P  +TH E  PT +LS++AN+TP+SD NQSPRNMYQCQM KQTMG   
Sbjct: 681  TE------QEVIPGDSTHVEFDPTNILSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPG 734

Query: 672  QALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILN 731
             AL  R D K+Y LQT QTPIVR   +  YG D +P GTNA+VAV++YTGYDM+DAMI+N
Sbjct: 735  TALSRRTDNKMYRLQTGQTPIVRAPLHNTYGFDNFPNGTNAVVAVISYTGYDMDDAMIIN 794

Query: 732  KSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQ--KLFRRNKDA---KSLHSVIDSDGLPY 786
            KS+ +RG  HG IY+T+ + L DD          K+F    ++   +S    +D+DGLP 
Sbjct: 795  KSAHERGFGHGSIYKTKKVSLKDDSRTRSAKSIVKMFGFAPNSTIRESTRDTLDNDGLPR 854

Query: 787  VGQMIHPGEPYCSIYDKTT--NSWRTNSR--------KGSESVFVDYVAVDMKNSKNLP- 835
            VG+++  G+  C+ +  +   N    N          K SE  FV+ V V   ++   P 
Sbjct: 855  VGRLLREGDVLCAWHTVSADYNGQLVNRDGITHYERYKDSEDAFVEEVRVIGADNGTEPL 914

Query: 836  QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSR 895
            Q  +I+ R  R+P+IGDKFSSRHGQKGVCSQ WP  DMPFS  TG++PD+IINPHAFPSR
Sbjct: 915  QTVSIKLRIPRSPVIGDKFSSRHGQKGVCSQKWPATDMPFSE-TGIQPDVIINPHAFPSR 973

Query: 896  MTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFN 955
            MTI M +ES+A K G+LHG   D+TPF             DE     D  G  L   G+N
Sbjct: 974  MTIGMFVESLAGKAGALHGLAQDSTPFK-----------FDEQNRAGDYFGHQLMKAGYN 1022

Query: 956  YHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRG 1015
            YHG E LYSG+ G E   +I+IG VYYQRLRHMV+DK+QVR+TG +   T QPIKGRK+G
Sbjct: 1023 YHGNEPLYSGITGEEFQADIYIGVVYYQRLRHMVNDKYQVRTTGPVVPTTGQPIKGRKKG 1082

Query: 1016 GGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREI 1075
            GGIR GEMERD+LLAHG ++LL DRL  CSDY  + +C  CGS     F+  Q      I
Sbjct: 1083 GGIRVGEMERDALLAHGTSFLLQDRLLNCSDYSKSWMCRQCGS-----FLSTQPTVSPFI 1137

Query: 1076 GGLPPARAPKKVTCHACQT----------------------------SKGMETVAMPYVF 1107
            G     +A   V C  C T                             +    VA+P   
Sbjct: 1138 G---KRKAVSTVRCRNCATRLDDMEDVDLMQLDGEIWEDGSGTQWVGGENTTVVAVPGAL 1194

Query: 1108 RYLAAELAAMNIKITLQL 1125
            +YL  ELAAM IK+  ++
Sbjct: 1195 KYLDVELAAMGIKLKYKV 1212


>gi|400595618|gb|EJP63410.1| RNA polymerase Rpb2 [Beauveria bassiana ARSEF 2860]
          Length = 1229

 Score =  877 bits (2267), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1148 (43%), Positives = 683/1148 (59%), Gaps = 117/1148 (10%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGS-PVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
            CR+  ++Y G+L A  E+      S   VR+    GQ P+MLK+ RCHL+      LV  
Sbjct: 118  CRERHVTYRGRLSATFEYNINGGDSHEFVRD---LGQIPIMLKSNRCHLENNSPALLVQR 174

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
            KEE+ E+GGYF++NG+E++ R + L K+N+PM++ R SF++R  GY+   ++IR VR D+
Sbjct: 175  KEESEELGGYFVVNGIEKIIRMLQLNKRNFPMAINRPSFQNRGPGYSPYGIIIRSVRPDE 234

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
            +S T  L+YL +G+V   F  +  EYL+PV +++KALV+TND EIF  L      K    
Sbjct: 235  TSQTNVLHYLNDGNVTFRFSWRKNEYLVPVIMIMKALVETNDREIFEGLIGPMGSK---- 290

Query: 217  KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
              A G+  +++RV+++L   +   L ++ +   ++G+ F+ V+   ++ S Y V    +R
Sbjct: 291  --ATGNTFLTDRVELLLRTYKSYGLYSKSETRAYLGQKFRVVLGVPETMSDYDVGTEFLR 348

Query: 277  DYIFVHLND-------NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
                VHL +       ++DKF +L+FM++KL++LV      DNPD++QNQEILL G L  
Sbjct: 349  RIALVHLGNVKVTEKQDDDKFKMLLFMVRKLYALVAGECAVDNPDAIQNQEILLGGFLYG 408

Query: 330  IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKK---VMEKNPSKQIGTSIETML 386
              LKE+L+++L  G +L   E         F +    K+    + +  ++ +GTSIE  L
Sbjct: 409  QILKERLDEFLGVGVRLSLREYFRRHPSVTFHSEEFRKEFPTAIFRKANENLGTSIEYFL 468

Query: 387  KTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESW 446
             TG L + +GLDLQQ AG+TV AE+LNFLRFI+ FR VHRGA FA L+TT+VRKLLPESW
Sbjct: 469  STGNLVSPSGLDLQQVAGFTVVAEKLNFLRFIAHFRMVHRGAFFAQLKTTTVRKLLPESW 528

Query: 447  GFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLP 506
            GF+CPVHTPDG PCGLLNH+   C++ + +       D SK+           G++  L 
Sbjct: 529  GFMCPVHTPDGAPCGLLNHLAHKCKIMTDH------IDVSKV----------PGLVAELG 572

Query: 507  KLVKSGPPAVLSV--LLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS 564
             +  S      SV  +LDG+V+G     E  ++   LR  KV     +P  LE+GYVP S
Sbjct: 573  AVDTSTASTAESVVIMLDGKVLGWCKPKESLRMADCLRHWKVEGNRGVPLHLEIGYVPPS 632

Query: 565  LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRN 623
             GG+YPG+Y+ ++P + +RPV+ + L  E+     ++GP+EQ +M I   P+  + G   
Sbjct: 633  TGGSYPGIYMTSTPSRMIRPVKYLPLQKED-----MVGPYEQPYMSIAVVPEEIESGL-- 685

Query: 624  AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
               +TH E  PT +LS++AN+TP+SD NQSPRNMYQCQM KQTMG    AL  R D K Y
Sbjct: 686  ---STHVEFDPTNILSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPGTALVHRTDNKSY 742

Query: 684  HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
             LQT QTPIVR   +  YG D +P GTN IVAV++YTGYDM+DAMI+NKS+ +RG  HG 
Sbjct: 743  RLQTGQTPIVRAPLHNAYGFDNFPNGTNVIVAVISYTGYDMDDAMIINKSAHERGFGHGT 802

Query: 744  IYQTETIDLSDD-----GNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYC 798
            +Y+T+ I L DD        V +       +  + S   ++D DGLP+VG+++  G+  C
Sbjct: 803  VYKTKKISLKDDSRTRASKSVTKAFGFAPHSYVSASYQGMLDDDGLPHVGRLVQEGDVIC 862

Query: 799  SIYDKTTNSWRTN-----------SRKGSESVFVDYV-AVDMKNSKNLPQKANIRFRHTR 846
            + +   T  +R +             K  E+ FV+ V  +   +   L Q  +I+FR  R
Sbjct: 863  A-WHTVTPDYRGDLVNLDGITHYEKYKDGETGFVEEVRLIGADSGSELLQTISIKFRIPR 921

Query: 847  NPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVA 906
             P+IGDKFSSRHGQKGVCSQ WP IDMPFS  +GM+PD+IINPHAFPSRMTI M +ES+A
Sbjct: 922  APLIGDKFSSRHGQKGVCSQKWPAIDMPFS-ESGMQPDVIINPHAFPSRMTIGMFVESLA 980

Query: 907  AKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGV 966
             K G+LHG   D+TPF  S + T GD             G  L   G+NYHG E +YSG+
Sbjct: 981  GKAGALHGLAQDSTPFKFSEQHTAGDY-----------FGHQLMKAGYNYHGNEPMYSGI 1029

Query: 967  YGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERD 1026
             G EL  +I+IG VYYQRLRHMV+DKFQVR+TG +   T QPIKGRKRGGGIR GEMERD
Sbjct: 1030 TGEELAADIYIGVVYYQRLRHMVNDKFQVRTTGPIVPTTGQPIKGRKRGGGIRVGEMERD 1089

Query: 1027 SLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPAR--AP 1084
            +LLAHG A+LL DRL  CSDY  + +C  CGS L+   + P       +    P+R  AP
Sbjct: 1090 ALLAHGTAFLLQDRLLNCSDYTKSWICRRCGSFLS---VQPT------VSQFAPSRKKAP 1140

Query: 1085 KKVTCHACQT---SKGME------------------------TVAMPYVFRYLAAELAAM 1117
              V C  C       G++                         V +P   +YL  ELAAM
Sbjct: 1141 SVVRCRHCAVRLDDDGIDLTEIQGEIWEDGQGRSWVGGDQTTQVVVPGALKYLDVELAAM 1200

Query: 1118 NIKITLQL 1125
             +K+  ++
Sbjct: 1201 GVKLKYRI 1208


>gi|242777481|ref|XP_002479042.1| DNA-directed RNA polymerase I subunit beta (Rpa2), putative
            [Talaromyces stipitatus ATCC 10500]
 gi|218722661|gb|EED22079.1| DNA-directed RNA polymerase I subunit beta (Rpa2), putative
            [Talaromyces stipitatus ATCC 10500]
          Length = 1264

 Score =  877 bits (2265), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 471/1055 (44%), Positives = 658/1055 (62%), Gaps = 77/1055 (7%)

Query: 38   CRQAKISYTGKLMADVEFQYLDA-GSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
            CR+   +Y G+L A +++Q  +      VRE    GQ P+ML++ RCHL+    Q+LV  
Sbjct: 135  CRERHATYRGRLRARLQYQVNNGEWHESVRE---LGQVPLMLRSNRCHLESFSPQQLVDH 191

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
            KEE+ E+GGYFI+NG E++ R +I+PK+N+PM++ R SF+ R  G+T   V IR  R DQ
Sbjct: 192  KEESEELGGYFIVNGNEKLIRMLIMPKRNFPMAINRPSFQKRGAGFTTFGVQIRSARPDQ 251

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
            ++ T  L+YL +G+V   F  + +EYL+PV ++LKALV+TND EIF  +      K    
Sbjct: 252  TTQTNVLHYLSDGNVTFRFSWRKQEYLVPVMMILKALVETNDREIFEGIVGNASTK---- 307

Query: 217  KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
                 +  V++RV+++L   +   + +R     ++G+ F+PV+    + ++       +R
Sbjct: 308  --GPANTFVTDRVELLLRTFKGYKIYSRSDARAYLGKKFRPVLFAPATWTHEECGAEFLR 365

Query: 277  DYIFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
              +  HL + N       DKF L++FM++KL++ V     +DNPD++ NQE++L G++  
Sbjct: 366  KIVLPHLGNQNVTTTQDYDKFKLMLFMIRKLYAFVAGDCAADNPDAISNQEVMLGGYVYG 425

Query: 330  IYLKEKLEDWLRKGKKLIQDEIENNGK-KFD--FFNLANIKKVMEKNPSKQIGTSIETML 386
            + LKE+LE+WL    +L++D     G  KF    F    I KV+++  ++ IG ++E  L
Sbjct: 426  MLLKERLEEWLLSFGRLVRDWSYRGGNLKFTDPSFEKDFIGKVIKRT-NENIGGALEYFL 484

Query: 387  KTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESW 446
             TG L + TGLD+QQ +G+TV AE++NF RFI+ FR VHRG  FA L+TT+VRKLLPESW
Sbjct: 485  STGNLVSPTGLDMQQASGFTVVAEKINFYRFIAHFRMVHRGTFFAQLKTTAVRKLLPESW 544

Query: 447  GFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS-ILRVLIGVGMIPSL 505
            GF+CPVHTPDG PCGLLNH+   C +A+           S +  S I RVL  +G+    
Sbjct: 545  GFMCPVHTPDGSPCGLLNHLAHKCLIAT-----------SDLDVSHIPRVLAQLGIKSEA 593

Query: 506  PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
               V       + V L+GRVVG     + + +   LR  KV  +  IP +LE+GYVP S 
Sbjct: 594  SAEVTES----VCVQLNGRVVGYCSPKQAKMIHDTLRFWKVEGSHDIPKELEIGYVPTSN 649

Query: 566  GGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAF 625
            GG YPG+Y+ + P +  RPV+ ++L       ++ +GPFEQ FMEI C +      R+  
Sbjct: 650  GGQYPGIYMSSQPARMYRPVKYLAL-----DKLDYVGPFEQPFMEIACLEEDI---RSGL 701

Query: 626  PATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHL 685
             +TH E  PT +LS++AN+TP+SD+NQSPRNMYQCQM+KQTMG    +  +R D KLY L
Sbjct: 702  -STHIEFTPTNILSIIANMTPFSDNNQSPRNMYQCQMSKQTMGTPGTSFAYRTDNKLYRL 760

Query: 686  QTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIY 745
            QT QTPIVR   Y  YG+D +P G NA+VA+LAYTGYDM+DAM++NKSS +RG  HG IY
Sbjct: 761  QTGQTPIVRPPLYNAYGLDNFPNGANAVVAILAYTGYDMDDAMVINKSSHERGFGHGTIY 820

Query: 746  QTETIDLSDDGNKVDRGQ----KLFRRNKDAK---SLHSVIDSDGLPYVGQMIHPGE--- 795
            +T+  +L D  ++ ++ +    KLF     ++      + +D DGLP+ G  I  G    
Sbjct: 821  KTKFYNLDDKDSRRNKSKREISKLFGFAPGSEIKAEYRATLDEDGLPHPGAKIKEGSYVA 880

Query: 796  -PYCSIYDKTTNSW-------RTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTR 846
              Y   YD  ++S+            K +E  ++D V +    + N P Q  +++FR  R
Sbjct: 881  AWYTVRYDAGSDSYINVDGITHFLKYKDAEEGYIDTVRLVGNENGNEPLQAISVKFRVPR 940

Query: 847  NPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVA 906
             PIIGDKFSSRHGQKGVCSQLWP IDMPFS  +G++PDLIINPHAFPSRMTIA ++ES+A
Sbjct: 941  RPIIGDKFSSRHGQKGVCSQLWPQIDMPFS-ESGIQPDLIINPHAFPSRMTIAQIIESMA 999

Query: 907  AKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGV 966
             K G+LHG   D+TPF  S           E  +  D  G  LR  G+NYHG E +YSG+
Sbjct: 1000 GKAGALHGHPQDSTPFQFS-----------EENTAADYFGHQLRKAGYNYHGNEPMYSGI 1048

Query: 967  YGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERD 1026
             G E   +I++G V+YQRLRHMV+DKFQVR+TG ++ +T QP+KGR +GGGIR GEMERD
Sbjct: 1049 TGKEFAADIYLGVVHYQRLRHMVNDKFQVRTTGPVNSVTGQPVKGRSKGGGIRVGEMERD 1108

Query: 1027 SLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLT 1061
            SLLAHG A+LL DRL  CSD   A +C  CGS L+
Sbjct: 1109 SLLAHGCAFLLQDRLMNCSDSQRAWICRDCGSFLS 1143


>gi|453084975|gb|EMF13019.1| DNA-directed RNA polymerase I subunit beta [Mycosphaerella populorum
            SO2202]
          Length = 1204

 Score =  877 bits (2265), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/1139 (42%), Positives = 686/1139 (60%), Gaps = 99/1139 (8%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR+  ++Y G+    +E++  D   P      +FG  P+ML++ RCHL+G   +KLV+ +
Sbjct: 114  CRERHVTYRGRFRGRLEWRINDG--PWKESPRDFGMLPIMLRSNRCHLEGLSPKKLVNAR 171

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EE  E+GGYFI+NG+E++ R +I+ ++NYPM+++R SF +R   Y+   V IR VR DQ+
Sbjct: 172  EETEELGGYFIVNGIEKLIRMLIVNRRNYPMAIIRPSFVNRGTAYSKFGVQIRSVRPDQT 231

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            S T  L+YL +G++   F  +  EYL+P  +V+KAL +TND EIF  +      K    K
Sbjct: 232  SQTNVLHYLNDGTLTFRFSWRKNEYLIPAVMVMKALAETNDREIFEGIVGPAGGKDMDTK 291

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
                   V +RV+++L   +  ++ T+ +C  ++GE F+PV+      S   V   ++R 
Sbjct: 292  -----QFVIDRVELLLRTFKPYNMHTKAKCRAYLGEKFRPVLGLPDDISNEDVGTELLRR 346

Query: 278  YIFVHLN-------DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITI 330
             +  HL        ++ DKF +L+FM +KL++LV+     DNPD++QNQEILLPGHL  +
Sbjct: 347  IVLPHLGSYDVTEANDMDKFRMLLFMTRKLYALVEGECAVDNPDAVQNQEILLPGHLYGM 406

Query: 331  YLKEKLEDWLRKGKKLIQDEIENNGKKFDF-------FNLANIKKVMEKNPSKQIGTSIE 383
             +KE++E+WL      ++ ++   G +  +       F    + KV+ K  ++ +G  ++
Sbjct: 407  IVKERIEEWLTTA---VRTQLSIWGAQNQYPSFLSKEFERDFMTKVIRKT-NENLGQGLD 462

Query: 384  TMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLP 443
              + TG L + +GLDLQQ +G+TV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLP
Sbjct: 463  YFMSTGNLVSPSGLDLQQVSGFTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLP 522

Query: 444  ESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP 503
            ESWGFLCPVHTPDG PCGLLNH+   C++A+           S   T +  V+  +G+  
Sbjct: 523  ESWGFLCPVHTPDGSPCGLLNHLAHKCKIATS----------SADTTHLPDVIAQLGVTS 572

Query: 504  SLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL 563
            +    +       ++V L+GR++G     + + +   LR  KV     +P DLE+GYVPL
Sbjct: 573  TSEASLNDS----VTVQLNGRILGYCSPKQAKVIHDTLRYWKVEGTHNVPLDLEIGYVPL 628

Query: 564  SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC--PDGGDGGR 621
            S GG YPG+Y+F+   + +RPV+ + L     + ++ IGPFEQ +M I C  P+   G  
Sbjct: 629  SAGGQYPGVYMFSEAARMIRPVKYLPL-----EKLDHIGPFEQPYMSIACTEPEIASGD- 682

Query: 622  RNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQK 681
                 ++H E   T +LS+VAN TP+S+ NQSPRNMYQCQM KQTMG    ALK+R D K
Sbjct: 683  -----SSHVEFDVTNILSIVANQTPFSNFNQSPRNMYQCQMGKQTMGTPGTALKYRTDNK 737

Query: 682  LYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCH 741
             Y LQT QTP+VRT  + +YG+D +P GTNA+VAV++YTGYDM+DAMILNKS+ +RG  +
Sbjct: 738  SYRLQTGQTPVVRTPKHNEYGLDNFPNGTNAVVAVISYTGYDMDDAMILNKSAHERGFGY 797

Query: 742  GQIYQTETIDLSDDGNKVDRGQKL-----FRRNKDAKS-LHSVIDSDGLPYVGQMIHPG- 794
            G IY+ + +DL++D  K  RG ++     F      K+   + +D DGLP VG  +  G 
Sbjct: 798  GTIYKAKKVDLNED--KGRRGAQVTSVFGFAPGGLIKAQWRATLDDDGLPAVGTKVREGD 855

Query: 795  ----------EPYCSIYDKTTNSWRTNSRKGSESVFVDYVAV---DMKNSKNLPQKANIR 841
                      +P+   Y+        +  K +E  +V+ V +   ++ N +   Q  +IR
Sbjct: 856  AIAAHYSVTKDPHTGEYENKDGVTHIHRYKDAEEAYVEEVKIIGNELGNGEPF-QAVSIR 914

Query: 842  FRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAML 901
            FR  R+P+IGDKFSSRHGQKGV SQ WP  DMPFS  +GM+PD+IINPHAFPSRMTI M 
Sbjct: 915  FRIPRSPVIGDKFSSRHGQKGVMSQKWPTTDMPFS-ESGMQPDVIINPHAFPSRMTIGMF 973

Query: 902  LESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEV 961
            +ES+A K G+LHG   D TPF    K         E ++ V+  G  L+  G+NY+G E 
Sbjct: 974  VESLAGKSGALHGLAQDCTPFKFKDK---------EGETAVEYFGHQLQRAGYNYYGNEP 1024

Query: 962  LYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFG 1021
            +YSG+ G EL  +I+IG VYYQRLRHMV+DKFQVR+TG +  +T QPIKGR +GGGIR G
Sbjct: 1025 MYSGITGEELAADIYIGVVYYQRLRHMVNDKFQVRTTGPVTPLTGQPIKGRAKGGGIRVG 1084

Query: 1022 EMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPA 1081
            EMERD+L+AHG ++LL DRL  CSDY  A +C  CGS L+      Q    R  GG    
Sbjct: 1085 EMERDALIAHGTSFLLQDRLMNCSDYTKAHICKKCGSFLSVQPSSGQFGTRRREGGRVRC 1144

Query: 1082 RAPKKVTCHACQTS------KG--------METVAMPYVFRYLAAELAAMNIKITLQLG 1126
            R   +       TS      KG        +  VA+P V +YL  ELAAM I++   +G
Sbjct: 1145 RRCSRKASQTDATSLCWVDRKGEKWCGGDEVTVVAIPGVLKYLDVELAAMGIRMKFDVG 1203


>gi|429859867|gb|ELA34625.1| DNA-directed RNA polymerase i subunit beta [Colletotrichum
            gloeosporioides Nara gc5]
          Length = 1225

 Score =  876 bits (2264), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/1138 (42%), Positives = 682/1138 (59%), Gaps = 97/1138 (8%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSP--VVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
            CR+   +Y G+L A  E++  D G P   VRE    GQ P+M+K+ RCHL+G    +LV 
Sbjct: 117  CRERHCTYRGRLSATFEYRIND-GDPKEFVRE---LGQVPIMVKSNRCHLEGNSPAQLVQ 172

Query: 96   LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
             KEE+ E+GGYFI+NG E++ R + + ++N+PM++ R SF++R +GYT   +++R VR D
Sbjct: 173  KKEESEELGGYFIVNGNEKIIRMLQVNRRNFPMAINRPSFQNRGQGYTPYGIILRSVRPD 232

Query: 156  QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
            ++S T  L+YL +G++   F  +  EYL+PV ++LKALV+TND EIF  L      K  K
Sbjct: 233  ETSQTNVLHYLSDGNMTFRFSWKKNEYLIPVMMILKALVETNDREIFEGLIGLSHSKSAK 292

Query: 216  EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
                  +  +++RV+++L   +   L ++ +   ++GE F+ V+    + S Y V    +
Sbjct: 293  ------NTFLTDRVELLLRTYKSYGLYSKTETRAYLGEKFRVVMGVPDTMSNYDVGTEFL 346

Query: 276  RDYIFVHL-------NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
            R  + VHL        ++NDKF  L+FM++KL++LV      DNPD+LQNQE+LL G L 
Sbjct: 347  RKIVLVHLGNVNVTEKEDNDKFRTLLFMIRKLYALVAGDCAVDNPDALQNQEVLLGGFLY 406

Query: 329  TIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKV---MEKNPSKQIGTSIETM 385
             + +KE+LE++L    +L   E         F +    K+    + ++ ++ +G  +E  
Sbjct: 407  GMIIKERLEEFLTTAVRLSLREWCRKHPATPFTSQEFAKEFPGNIFRHANENVGNGLEYF 466

Query: 386  LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
            L TG L + +GLDLQQ AG+TV AE+LNFLRFIS FR +HRGA FA L+TT+VRKLLPES
Sbjct: 467  LSTGNLTSPSGLDLQQTAGFTVVAEKLNFLRFISHFRMIHRGAFFAELKTTTVRKLLPES 526

Query: 446  WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
            WGF+CPVHTPDG PCGLLNH+   C++ +         D SK    I  ++  +G +   
Sbjct: 527  WGFMCPVHTPDGAPCGLLNHLAHKCKIMT------ESVDASK----IPALVTELGAV--- 573

Query: 506  PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
             +   +     + ++LDGR++G     E  ++   LR  KV     +P  LE+GYVP S 
Sbjct: 574  -QTSSAATDESVVIMLDGRIIGFCTPRESLRIADTLRHWKVEGTHGVPLQLEIGYVPPSH 632

Query: 566  GGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAF 625
            GG+YPG+YL ++P + VRPV+ + L  E+      +GP EQ +M I   +        + 
Sbjct: 633  GGSYPGVYLASAPARMVRPVKYLPLDKED-----FVGPHEQPYMSIAVVEN----EIVSG 683

Query: 626  PATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHL 685
              TH E  PT MLS++AN+TP+SD NQSPRNMYQCQM KQTMG    AL+ R D K+Y L
Sbjct: 684  ETTHVEFSPTNMLSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPGAALRHRTDNKMYRL 743

Query: 686  QTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIY 745
            Q+ QTP+VR+  +  YG D +P GTNA+VAV++YTGYDM+DAMILNKS+ +RG  HG IY
Sbjct: 744  QSGQTPVVRSPLHNAYGFDNFPNGTNAVVAVISYTGYDMDDAMILNKSAHERGFGHGTIY 803

Query: 746  QTETIDLSDDG--NKVDRGQKLFRRNKDA---KSLHSVIDSDGLPYVGQMIHPGEPYCSI 800
            +T+ + L D+     V    KLF             + +D DGLP+VG+M+  G+  C+ 
Sbjct: 804  KTKKVSLKDESRTRSVKNITKLFGFAPGGFVKGHYRAALDEDGLPFVGRMVQEGDVLCAW 863

Query: 801  YDKTTN----------SWRTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPI 849
            +  + +                 K SE+ F++ V V    + N P Q  +I+ R  R+P+
Sbjct: 864  HTVSADYSGKLINLDGQTHYEKYKESETAFIEEVRVIGSETGNEPAQTVSIKLRIPRSPV 923

Query: 850  IGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKG 909
            IGDKFSSRHGQKGV SQ WP IDMPFS  +GM+PD+IINPHAFPSRMTI M +ES+A K 
Sbjct: 924  IGDKFSSRHGQKGVASQKWPAIDMPFS-ESGMQPDVIINPHAFPSRMTIGMFVESLAGKA 982

Query: 910  GSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGT 969
            G+LHG   D+TPF             +E  +  D  G  L   G+NYHG E +YSG+ G 
Sbjct: 983  GALHGLAQDSTPFK-----------FNEENTAADYFGHQLMKAGYNYHGNEPMYSGITGE 1031

Query: 970  ELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLL 1029
            EL  +I++G VYYQRLRHMV+DK+QVR+TG +   T QPIKGRKRGGGIR GEMERD+LL
Sbjct: 1032 ELAADIYVGVVYYQRLRHMVNDKYQVRTTGPVVPTTGQPIKGRKRGGGIRVGEMERDALL 1091

Query: 1030 AHGAAYLLHDRLHTCSDYHVADVCSLCGSVLT-----ATFIHPQKR---------AIREI 1075
            AHG A+LL DRL  CSDY    +C  CGS L+     + F+  +K+         A +  
Sbjct: 1092 AHGTAFLLQDRLLNCSDYTKTWICRSCGSFLSVQPTVSPFVGKKKQVTTVRCRNCATQLD 1151

Query: 1076 GGLPPARAPKKVTCHACQTSKGME--------TVAMPYVFRYLAAELAAMNIKITLQL 1125
             G   A +  KV     +  +G +         V +P   +YL  ELAAM +K+  ++
Sbjct: 1152 AG--DAVSAAKVEGEIWEDGQGNQWVGGENTTMVVVPGALKYLDVELAAMGVKLKYRV 1207


>gi|345564896|gb|EGX47854.1| hypothetical protein AOL_s00083g9 [Arthrobotrys oligospora ATCC
            24927]
          Length = 1189

 Score =  876 bits (2264), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/1137 (42%), Positives = 680/1137 (59%), Gaps = 127/1137 (11%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR+   SY G+L   +E QY        +E  + G  P+M+   RCHL+    + LV  K
Sbjct: 121  CRERHSSYRGQL--QLELQYKVNNGDWQKEYRDCGLLPLMVMGNRCHLESMSPRSLVDHK 178

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EE+ E+GGYFI++G E++ R +I+ ++NY M+++RSS+  R   YT+  V IRCVR DQS
Sbjct: 179  EESEEIGGYFIVSGNEKLVRMLIVNRRNYAMAVIRSSYAKRGPSYTNMGVQIRCVRPDQS 238

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
             +T  ++YL +G++   F  + +EYL+PV ++LKALVDTND EI+              +
Sbjct: 239  CMTNVIHYLSDGNITFRFSWRKREYLVPVMMILKALVDTNDREIY--------------E 284

Query: 218  GAVG-----SPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAE 272
            G VG        +++RV+++L   +  +L +R + L ++G+ F+ V+      S   V +
Sbjct: 285  GIVGLDQREDTFLTDRVELLLRTYKAYNLYSRHETLAYLGDKFRIVMQVSPDVSDVEVGK 344

Query: 273  TVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYL 332
              ++  + V+LND+ DK   L+FM++KL+SLV  T  +DN D+ Q+ E+LL G L    L
Sbjct: 345  LFLKRIVLVYLNDDGDKQRQLLFMIKKLYSLVAGTCAADNVDAAQHHEVLLGGFLYGQIL 404

Query: 333  KEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLA 392
            KEK E++L   +  ++ ++   G K +F +   I+K++ K  +++IG S+   L TG L+
Sbjct: 405  KEKFEEYLLNIRSQVRSDLMG-GAKVEFGSPQYIRKMLGK-VNERIGESLHYFLSTGNLS 462

Query: 393  TQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPV 452
            + +GLDLQQ  G+TV AE+LNF R+IS FR VHRG+ FA L+TT+VRKLLPESWGFLCPV
Sbjct: 463  SPSGLDLQQTTGFTVVAEKLNFYRYISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPV 522

Query: 453  HTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSG 512
            HTPDG PCGLLNH+   CR+A+         D S++   +L + +    +  +P      
Sbjct: 523  HTPDGSPCGLLNHLAHKCRIATI------TSDTSQVGPLVLTLGVHSAKVLPVPT----- 571

Query: 513  PPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGL 572
              A LSV LDGR++G     +  +V   LR  KVS    +P DLE+GYVP S GG YPG+
Sbjct: 572  -DATLSVQLDGRILGWCSPRDARRVAESLRFYKVSGTHNVPLDLEIGYVPTSNGGQYPGV 630

Query: 573  YLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPD----GGDGGRRNAFPAT 628
            YLF+   + +RPV+ + L  E+      +GPFEQ F+ I   D     GD         +
Sbjct: 631  YLFSQEARMIRPVKYLPLDKED-----FVGPFEQPFLNIAVTDPEIKSGD---------S 676

Query: 629  HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTP 688
            H E  PT +LS+VAN+TP+SD NQSPRNMYQCQM KQTMG    A++ R D K+Y LQT 
Sbjct: 677  HVEFDPTNILSIVANMTPFSDFNQSPRNMYQCQMGKQTMGTPGTAIRHRTDNKMYRLQTG 736

Query: 689  QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
            Q+P+VR   Y  YG+D +P G NA+VAV+AYTGYDM+DAMI+NKS+ +RG  +G +Y+TE
Sbjct: 737  QSPVVRAPLYNTYGLDNFPNGMNAVVAVIAYTGYDMDDAMIINKSAHERGFGYGTVYKTE 796

Query: 749  TIDLSDDGNK----------------VDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIH 792
              DL++                           ++  KD  S  ++ D DGLP VGQ I 
Sbjct: 797  KYDLAEKSKSKSPVLAFGWGWAAIGADAAALAKYKAMKDKYS-ETLDDMDGLPMVGQKIV 855

Query: 793  PGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAV---DMKNSKNLPQKANIRFRHTRNPI 849
             G+P    ++  T        KGSE  +++ V +   D+ +S  + Q  +++FR TR+P+
Sbjct: 856  EGQPVAVYHNMGTGETFFFKYKGSEDAYIEEVRLLGNDVGDS--ICQAISVKFRITRSPL 913

Query: 850  IGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKG 909
            IGDKFSSRHGQKGVCSQ WP +DMPFS  +G++PD+IINPHAFPSRMTI M +ES+A K 
Sbjct: 914  IGDKFSSRHGQKGVCSQKWPAVDMPFS-ESGIQPDVIINPHAFPSRMTIGMFVESMAGKA 972

Query: 910  GSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGT 969
            G+LHG   D+TPF              E  +  D  GE L++ G+NY+G E +YSG+ G 
Sbjct: 973  GTLHGFAQDSTPFKFG-----------EQHTAFDYFGEQLKSAGYNYYGNEPMYSGITGQ 1021

Query: 970  ELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLL 1029
            E   +I++G VYYQRLRHMV+DK+QVRSTG +D  TRQP+KGRKR GG+R GEMERDSLL
Sbjct: 1022 EFHADIYLGVVYYQRLRHMVNDKYQVRSTGPVDSRTRQPVKGRKRMGGLRIGEMERDSLL 1081

Query: 1030 AHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKK--V 1087
            AHG A+L+ DRL  CSDYH   VC  CGS L+ T               P A   ++  V
Sbjct: 1082 AHGTAFLVQDRLLNCSDYHQTWVCRGCGSFLSTT---------------PTAAGERRAEV 1126

Query: 1088 TCHACQTSK---------------------GMET--VAMPYVFRYLAAELAAMNIKI 1121
             C  C                         G +T  V +PYV +YL  EL AM I++
Sbjct: 1127 RCRRCANKATEFDIGKKGYWEDGLGNRFIGGEDTTVVVIPYVLKYLDVELLAMGIQM 1183


>gi|406700694|gb|EKD03859.1| DNA-directed RNA polymerase i polypeptide 2 [Trichosporon asahii var.
            asahii CBS 8904]
          Length = 1212

 Score =  876 bits (2263), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 470/1040 (45%), Positives = 654/1040 (62%), Gaps = 64/1040 (6%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAG-----SPVVRERFNFGQFPVMLKTRRCHLQGADSQK 92
             R+   +Y  +L   ++++   A      S  VRE    G  P+M+K+ RC+++G  + +
Sbjct: 127  ARERLTTYRSRLTVTIKWKVTTADGTTRESEEVRE---CGMLPIMVKSARCNIRGMPAAE 183

Query: 93   LVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCV 152
            LV   EE++  GGYFI+NG E++ R +ILP++++P+++ R SF  R   YT     IRCV
Sbjct: 184  LVKHGEESSSWGGYFIINGNEKLVRYLILPRRHHPINLYRPSFAKRGVSYTPYGCQIRCV 243

Query: 153  RKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEK 212
            R DQS+ T  ++YL NG   L F  +  EY++P+ ++LKALVD +DLEIF  L       
Sbjct: 244  RPDQSACTNTIHYLSNGGAMLRFAWRKVEYMIPLVLILKALVDASDLEIFEGLV------ 297

Query: 213  YKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAE 272
                +G   +  +++RV+++L   +  +L T  QCL ++G+ F+ V++     +   V  
Sbjct: 298  ----QGEYDNTFLTDRVELLLRGQKSWNLQTGTQCLDYLGDKFRVVMNCPDDWTNVQVGS 353

Query: 273  TVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYL 332
             +++  + VHL    +KF +L+FML+KL+S+V  TS  DNPDS Q+ E+LLPG L  + +
Sbjct: 354  YLLKKVVLVHLPQPREKFRMLLFMLRKLYSMVAGTSCPDNPDSPQHHEVLLPGFLYAMII 413

Query: 333  KEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLA 392
            KE+ ++ L   K  I  ++   G+   F +      V+ K  +  +G+ +   L TG L 
Sbjct: 414  KERFDESLNAVKAQINMDMRQ-GRAKSFDDPKYFPSVLTKV-NFDVGSKLSYFLATGNLV 471

Query: 393  TQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPV 452
            + TGLDLQQ +G+TV AE+LNF R++S FR +HRGA FA L+TT+VRKLLPESWGFLCPV
Sbjct: 472  SPTGLDLQQTSGFTVVAEKLNFYRYLSHFRCIHRGAFFAELKTTAVRKLLPESWGFLCPV 531

Query: 453  HTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSG 512
            HTPDG PCGLLNH++ TC++           D SK    I ++L   GM       +   
Sbjct: 532  HTPDGSPCGLLNHLSHTCQIVV------KPLDTSK----IPQLLSAHGMTQVFATGIDGR 581

Query: 513  PPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGL 572
               V  V LDGRV+G    ++ +++   LR+LK    + +P DLEVGYVP++ GG YPGL
Sbjct: 582  TNVV--VQLDGRVIGWASPTKAKELADLLRKLKTEGDARVPLDLEVGYVPVTKGGQYPGL 639

Query: 573  YLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEE 631
            YLF S  + +RPV  +     E+  ++ +G FEQV+M+I   P+  + G      +TH E
Sbjct: 640  YLFGSRSRMMRPVTYL-----ENDKMDHVGTFEQVYMDIAIKPEEVEKGV-----STHVE 689

Query: 632  IHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTP 691
            + PT MLSV+ANLTP+SD NQSPRNMYQCQM KQTMG    AL+ R D K Y +Q PQTP
Sbjct: 690  LDPTSMLSVLANLTPFSDFNQSPRNMYQCQMGKQTMGTPSTALQHRTDNKFYRIQNPQTP 749

Query: 692  IVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETID 751
            IVR + +  YG D++P  TNAI+AV++YTGYDMEDAMILNKSS +RG  +G +Y+ +  D
Sbjct: 750  IVRPSLHNDYGFDDFPNATNAILAVISYTGYDMEDAMILNKSSHERGFGYGTVYKADIFD 809

Query: 752  LSDDGNKVDRGQKL-FRRNKDAK---SLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNS 807
            L D          L F   +D K        +D DGLP +G  +  G+P C+  D TT  
Sbjct: 810  LKDAARSRTAAPTLHFGLGRDVKPDSPWRQFLDQDGLPQLGTRVKSGDPLCAYIDDTTGR 869

Query: 808  WRTNSRKGSESVFVDYVAV---DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVC 864
             + +  KG E+ ++D V V   D+ +S+   QK +I+ R  R+P+IGDKFSSRHGQKGVC
Sbjct: 870  TKVHKYKGDETAYIDEVRVLGSDLGDSEL--QKIHIKLRIPRSPVIGDKFSSRHGQKGVC 927

Query: 865  SQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFAN 924
            S  + DIDMPFS  +GMRPD+IINPHAFPSRMTI M +E +AAK G++HG+  DATPF  
Sbjct: 928  SVKFKDIDMPFS-ESGMRPDVIINPHAFPSRMTIGMFVEMLAAKAGAVHGQCQDATPFKF 986

Query: 925  SVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQR 984
            S           +++  V+  GE LR  G+NYHG E +YSGV G E+  +IF+ P  YQR
Sbjct: 987  S-----------DAEGPVEFFGEQLRKAGYNYHGNEPMYSGVTGEEMRADIFLAPCAYQR 1035

Query: 985  LRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTC 1044
            LRH V+DK+Q RSTG +D +TRQP+KGRKR GGIRFGEMERD+L+AHG ++LL DRL  C
Sbjct: 1036 LRHQVNDKYQARSTGPVDPLTRQPVKGRKRAGGIRFGEMERDALIAHGTSFLLQDRLMNC 1095

Query: 1045 SDYHVADVCSLCGSVLTATF 1064
            SDY  A VC  CGS+++  F
Sbjct: 1096 SDYSTAWVCRGCGSLISLGF 1115


>gi|6325267|ref|NP_015335.1| Rpa135p [Saccharomyces cerevisiae S288c]
 gi|133320|sp|P22138.1|RPA2_YEAST RecName: Full=DNA-directed RNA polymerase I subunit RPA135; AltName:
            Full=DNA-directed RNA polymerase I 135 kDa polypeptide;
            Short=A135; AltName: Full=DNA-directed RNA polymerase I
            polypeptide 2; Short=RNA polymerase I subunit 2
 gi|172464|gb|AAA34993.1| RNA polymerase I (second largest subunit) [Saccharomyces cerevisiae]
 gi|887587|emb|CAA90154.1| Rpa2p [Saccharomyces cerevisiae]
 gi|939744|gb|AAA97589.1| Rpa135p [Saccharomyces cerevisiae]
 gi|1314085|emb|CAA95050.1| Rpa2p [Saccharomyces cerevisiae]
 gi|190407954|gb|EDV11219.1| RNA polymerase I subunit [Saccharomyces cerevisiae RM11-1a]
 gi|259150163|emb|CAY86966.1| Rpa135p [Saccharomyces cerevisiae EC1118]
 gi|285815545|tpg|DAA11437.1| TPA: Rpa135p [Saccharomyces cerevisiae S288c]
 gi|323350179|gb|EGA84326.1| Rpa135p [Saccharomyces cerevisiae VL3]
          Length = 1203

 Score =  875 bits (2262), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/1116 (43%), Positives = 684/1116 (61%), Gaps = 79/1116 (7%)

Query: 39   RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
            RQ   SY GKL+  +++  ++ G   + E  + G  PVML++ RCHL      +LV  KE
Sbjct: 127  RQRLTSYRGKLLLKLKWS-VNNGEENLFEVRDCGGLPVMLQSNRCHLNKMSPYELVQHKE 185

Query: 99   EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
            E+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R   Y+   + IR VR DQ+S
Sbjct: 186  ESDEIGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFANRGASYSHYGIQIRSVRPDQTS 245

Query: 159  VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKG 218
             T  L+YL +G V   F  +  EYL+PV ++LKAL  T+D EIF+ +             
Sbjct: 246  QTNVLHYLNDGQVTFRFSWRKNEYLVPVVMILKALCHTSDREIFDGII----------GN 295

Query: 219  AVGSPLVSERVKIILAEVQDL--SLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
             V    +++R++++L   +     L  R Q LQ++G+ F+ V      +S   V + V+ 
Sbjct: 296  DVKDSFLTDRLELLLRGFKKRYPHLQNRTQVLQYLGDKFRVVFQASPDQSDLEVGQEVLD 355

Query: 277  DYIFVHL--NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKE 334
              + VHL  + + DKF +L+FM++KL+SLV      DNPD+ Q+QE+LL G L  + LKE
Sbjct: 356  RIVLVHLGKDGSQDKFRMLLFMIRKLYSLVAGECSPDNPDATQHQEVLLGGFLYGMILKE 415

Query: 335  KLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQ 394
            K++++L+     ++ +I N G   +F +   + +V+ +  ++ IG+ ++  L TG L +Q
Sbjct: 416  KIDEYLQNIIAQVRMDI-NRGMAINFKDKRYMSRVLMR-VNENIGSKMQYFLSTGNLVSQ 473

Query: 395  TGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHT 454
            +GLDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPVHT
Sbjct: 474  SGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHT 533

Query: 455  PDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPP 514
            PDG PCGLLNH    CR+++         D S+    I  +L  +G+ P+         P
Sbjct: 534  PDGSPCGLLNHFAHKCRISTQQS------DVSR----IPSILYSLGVAPASHTFAAG--P 581

Query: 515  AVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV-IPDDLEVGYVPLSLGGAYPGLY 573
            ++  V +DG+++G +   + + +   LR  KV   +  +P DLE+GYVP S  G YPGLY
Sbjct: 582  SLCCVQIDGKIIGWVSHEQGKIIADTLRYWKVEGKTPGLPIDLEIGYVPPSTRGQYPGLY 641

Query: 574  LFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIH 633
            LF    + +RPVR + L  E+     ++GPFEQV+M I         + N    TH E  
Sbjct: 642  LFGGHSRMLRPVRYLPLDKED-----IVGPFEQVYMNIAVTP--QEIQNNVH--THVEFT 692

Query: 634  PTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIV 693
            PT +LS++ANLTP+SD NQSPRNMYQCQM KQTMG    AL  R+D KLY LQT QTPIV
Sbjct: 693  PTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQTGQTPIV 752

Query: 694  RTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLS 753
            + N Y  YG+D +P G NA+VAV++YTGYDM+DAMI+NKS+ +RG  +G +Y+TE +DL+
Sbjct: 753  KANLYDDYGMDNFPNGFNAVVAVISYTGYDMDDAMIINKSADERGFGYGTMYKTEKVDLA 812

Query: 754  DDGNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTN 811
             + N+ D   + F    D   K     +D DGLPY+G  +  G+P C+ +D T N  +  
Sbjct: 813  LNRNRGDPITQHFGFGNDEWPKEWLEKLDEDGLPYIGTYVEEGDPICAYFDDTLNKTKIK 872

Query: 812  SRKGSESVFVDYVAV--DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWP 869
            +   SE  +++ V +  D  N     Q  +I++R  R P IGDKFSSRHGQKGVCS+ WP
Sbjct: 873  TYHSSEPAYIEEVNLIGDESNKFQELQTVSIKYRIRRTPQIGDKFSSRHGQKGVCSRKWP 932

Query: 870  DIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKT 929
             IDMPFS  TG++PD+IINPHAFPSRMTI M +ES+A K G+LHG   D+TP+       
Sbjct: 933  TIDMPFSE-TGIQPDIIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPWI------ 985

Query: 930  NGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMV 989
                  +E  +  D  GE L   G+NYHG E +YSG  G EL  +I++G VYYQRLRHMV
Sbjct: 986  -----FNEDDTPADYFGEQLAKAGYNYHGNEPMYSGATGEELRADIYVGVVYYQRLRHMV 1040

Query: 990  SDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHV 1049
            +DKFQVRSTG ++ +T QP+KGRKR GGIR GEMERD+L+ HG ++LL DRL   SDY  
Sbjct: 1041 NDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIGHGTSFLLQDRLLNSSDYTQ 1100

Query: 1050 ADVCSLCGSVLTATFIHPQKRAIREIGG-------------LPPARAPKKVTCHACQTSK 1096
            A VC  CGS+LT     P+  +I  +               L  +   +K+     Q  +
Sbjct: 1101 ASVCRECGSILTTQQSVPRIGSISTVCCRRCSMRFEDAKKLLTKSEDGEKIFIDDSQIWE 1160

Query: 1097 ---------GME--TVAMPYVFRYLAAELAAMNIKI 1121
                     G E  TVA+P+V +YL +EL+AM I++
Sbjct: 1161 DGQGNKFVGGNETTTVAIPFVLKYLDSELSAMGIRL 1196


>gi|151942801|gb|EDN61147.1| RNA polymerase A [Saccharomyces cerevisiae YJM789]
 gi|349581826|dbj|GAA26983.1| K7_Rpa135p [Saccharomyces cerevisiae Kyokai no. 7]
          Length = 1203

 Score =  875 bits (2262), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/1116 (43%), Positives = 684/1116 (61%), Gaps = 79/1116 (7%)

Query: 39   RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
            RQ   SY GKL+  +++  ++ G   + E  + G  PVML++ RCHL      +LV  KE
Sbjct: 127  RQRLTSYRGKLLLKLKWS-VNNGEENLFEVRDCGGLPVMLQSNRCHLNKMSPYELVQHKE 185

Query: 99   EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
            E+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R   Y+   + IR VR DQ+S
Sbjct: 186  ESDEIGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFANRGASYSHYGIQIRSVRPDQTS 245

Query: 159  VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKG 218
             T  L+YL +G V   F  +  EYL+PV ++LKAL  T+D EIF+ +             
Sbjct: 246  QTNVLHYLNDGQVTFRFSWRKNEYLVPVVMILKALCHTSDREIFDGII----------GN 295

Query: 219  AVGSPLVSERVKIILAEVQDL--SLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
             V    +++R++++L   +     L  R Q LQ++G+ F+ V      +S   V + V+ 
Sbjct: 296  DVKDSFLTDRLELLLRGFKKRYPQLQNRTQVLQYLGDKFRVVFQASPDQSDLEVGQEVLD 355

Query: 277  DYIFVHL--NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKE 334
              + VHL  + + DKF +L+FM++KL+SLV      DNPD+ Q+QE+LL G L  + LKE
Sbjct: 356  RIVLVHLGKDGSQDKFRMLLFMIRKLYSLVAGECSPDNPDATQHQEVLLGGFLYGMILKE 415

Query: 335  KLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQ 394
            K++++L+     ++ +I N G   +F +   + +V+ +  ++ IG+ ++  L TG L +Q
Sbjct: 416  KIDEYLQNIIAQVRMDI-NRGMAINFKDKRYMSRVLMR-VNENIGSKMQYFLSTGNLVSQ 473

Query: 395  TGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHT 454
            +GLDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPVHT
Sbjct: 474  SGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHT 533

Query: 455  PDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPP 514
            PDG PCGLLNH    CR+++         D S+    I  +L  +G+ P+         P
Sbjct: 534  PDGSPCGLLNHFAHKCRISTQQS------DVSR----IPSILYSLGVAPASHTFAAG--P 581

Query: 515  AVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV-IPDDLEVGYVPLSLGGAYPGLY 573
            ++  V +DG+++G +   + + +   LR  KV   +  +P DLE+GYVP S  G YPGLY
Sbjct: 582  SLCCVQIDGKIIGWVSHEQGKIIADTLRYWKVEGKTPGLPIDLEIGYVPPSTRGQYPGLY 641

Query: 574  LFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIH 633
            LF    + +RPVR + L  E+     ++GPFEQV+M I         + N    TH E  
Sbjct: 642  LFGGHSRMLRPVRYLPLDKED-----IVGPFEQVYMNIAVTP--QEIQNNVH--THVEFT 692

Query: 634  PTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIV 693
            PT +LS++ANLTP+SD NQSPRNMYQCQM KQTMG    AL  R+D KLY LQT QTPIV
Sbjct: 693  PTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQTGQTPIV 752

Query: 694  RTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLS 753
            + N Y  YG+D +P G NA+VAV++YTGYDM+DAMI+NKS+ +RG  +G +Y+TE +DL+
Sbjct: 753  KANLYDDYGMDNFPNGFNAVVAVISYTGYDMDDAMIINKSADERGFGYGTMYKTEKVDLA 812

Query: 754  DDGNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTN 811
             + N+ D   + F    D   K     +D DGLPY+G  +  G+P C+ +D T N  +  
Sbjct: 813  LNRNRGDPITQHFGFGNDEWPKEWLEKLDEDGLPYIGTYVEEGDPICAYFDDTLNKTKIK 872

Query: 812  SRKGSESVFVDYVAV--DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWP 869
            +   SE  +++ V +  D  N     Q  +I++R  R P IGDKFSSRHGQKGVCS+ WP
Sbjct: 873  TYHSSEPAYIEEVNLIGDESNKFQELQTVSIKYRIRRTPQIGDKFSSRHGQKGVCSRKWP 932

Query: 870  DIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKT 929
             IDMPFS  TG++PD+IINPHAFPSRMTI M +ES+A K G+LHG   D+TP+       
Sbjct: 933  TIDMPFSE-TGIQPDIIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPWI------ 985

Query: 930  NGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMV 989
                  +E  +  D  GE L   G+NYHG E +YSG  G EL  +I++G VYYQRLRHMV
Sbjct: 986  -----FNEDDTPADYFGEQLAKAGYNYHGNEPMYSGATGEELRADIYVGVVYYQRLRHMV 1040

Query: 990  SDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHV 1049
            +DKFQVRSTG ++ +T QP+KGRKR GGIR GEMERD+L+ HG ++LL DRL   SDY  
Sbjct: 1041 NDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIGHGTSFLLQDRLLNSSDYTQ 1100

Query: 1050 ADVCSLCGSVLTATFIHPQKRAIREIGG-------------LPPARAPKKVTCHACQTSK 1096
            A VC  CGS+LT     P+  +I  +               L  +   +K+     Q  +
Sbjct: 1101 ASVCRECGSILTTQQSVPRIGSISTVCCRRCSMRFEDAKKLLTKSEDGEKIFIDDSQIWE 1160

Query: 1097 ---------GME--TVAMPYVFRYLAAELAAMNIKI 1121
                     G E  TVA+P+V +YL +EL+AM I++
Sbjct: 1161 DGQGNKFVGGNETTTVAIPFVLKYLDSELSAMGIRL 1196


>gi|315039663|ref|XP_003169207.1| DNA-directed RNA polymerase I subunit RPA2 [Arthroderma gypseum CBS
            118893]
 gi|311337628|gb|EFQ96830.1| DNA-directed RNA polymerase I subunit RPA2 [Arthroderma gypseum CBS
            118893]
          Length = 1243

 Score =  875 bits (2262), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/1167 (43%), Positives = 692/1167 (59%), Gaps = 129/1167 (11%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDA-GSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
             CR+   +Y GKL A +E++  +      VRE    GQ P+ML++ RCHL+ A   +LV 
Sbjct: 126  ECRERHATYRGKLRARLEYRVNNGEWKESVRE---LGQVPIMLRSNRCHLEKATPAQLVD 182

Query: 96   LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
             KEE+ E+GGYF++NG E++ R +I+ K+N+P +++R+SF+ R   YT   V IR VR D
Sbjct: 183  RKEESEELGGYFVVNGNEKLIRMLIVGKRNFPTAIIRNSFQKRGSAYTKFGVQIRSVRPD 242

Query: 156  QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
            Q+S T  L+YL +G+V   F  +  EYL+PV ++LKAL++TND EIF  L          
Sbjct: 243  QTSQTNVLHYLNDGNVTFRFSWRKNEYLVPVMMILKALIETNDREIFERLVGG------- 295

Query: 216  EKGAVG--SPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAET 273
             +G++G  +  V++RV+++L   +   + +R +C  ++G  F+ V+   +      V   
Sbjct: 296  -EGSLGIENTFVTDRVELLLRTYKAYGVHSRSKCRAYLGSKFRFVLGMPEDVPDEDVGTE 354

Query: 274  VIRDYIFVHLND-------NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGH 326
             +R  +  HL +       NNDKFN+++FM++KL++LV      DNPD++ NQE+LL G+
Sbjct: 355  FLRKIVLPHLGNQNVTETQNNDKFNMILFMIRKLYNLVAGDCAPDNPDAVSNQEVLLGGY 414

Query: 327  LITIYLKEKLEDWLRKGKKLIQD-EIENNGKKFD--FFNLANIKKVMEKNPSKQIGTSIE 383
            L  + LKE+LE+WL+    +++D  ++N+  KF    F    + +V+ +  ++ IG ++E
Sbjct: 415  LYGMLLKERLEEWLKSVGPIVRDWRLKNDDAKFTDPSFERDFLARVIGRT-NENIGGAME 473

Query: 384  TMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLP 443
              L TG L + TGLDLQQ +GYTV AE++NF RFIS FR +HRG+ FA L+TT+VRKLLP
Sbjct: 474  YFLSTGNLVSPTGLDLQQPSGYTVMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLP 533

Query: 444  ESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS-ILRVLIGVGMI 502
            ESWGFLCPVHTPDG PCGLLNH+   C +++           S +  S +  VL G+G+ 
Sbjct: 534  ESWGFLCPVHTPDGSPCGLLNHLAHKCLIST-----------SNLDVSGVPGVLAGLGVT 582

Query: 503  PSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVP 562
                   +   P    VLLDG+++G     +   +   LR  KV     IP +LE+GYVP
Sbjct: 583  SESSCSTEESIP----VLLDGKILGYCTPKQSRVIADTLRYWKVQGHKHIPVELEIGYVP 638

Query: 563  LSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC--PDGGDGG 620
             S GG YPG+Y+F+   +  RPVR + L       ++ +GPFEQ +MEI C   D  +G 
Sbjct: 639  SSNGGQYPGVYMFSEAARMYRPVRYLPL-----DRLDYVGPFEQPYMEIACVASDIKNG- 692

Query: 621  RRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQ 680
                  +TH E  PT +LS++AN+TP+SD NQSPRNMYQCQM KQ MG    A+++R D 
Sbjct: 693  -----VSTHIEFDPTHILSILANMTPFSDFNQSPRNMYQCQMGKQAMGTPGTAIEYRTDN 747

Query: 681  KLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMC 740
            KLY LQT QTP+VR   Y  YG+D +P G NA+VAV++YTGYDM+DAMI+NKSS +RG  
Sbjct: 748  KLYRLQTGQTPVVRPPLYNAYGLDNFPNGMNAVVAVISYTGYDMDDAMIINKSSHERGFG 807

Query: 741  HGQIYQTETIDLSDDGNKVDRGQ------KLFRRNKDA---KSLHSVIDSDGLPYVGQMI 791
            +G IY+T+   L DD     RG+      KLF             S +D DGLP++G  +
Sbjct: 808  YGTIYKTKIYAL-DDKESRGRGKSKRAITKLFGFAPGGLIKAEWKSQLDEDGLPHIGAKV 866

Query: 792  HPGEPYCSI----YDKTTNSWRTNSR-------KGSESVFVDYVAVDMKNSKN-LPQKAN 839
              G   C+     YD  T+++    +       K  E  FVD V V    + N + Q  +
Sbjct: 867  SEGSLVCAWYTVQYDPATDTYINVDKQTHFLKYKDGEEGFVDSVRVLGSETGNEVCQAVS 926

Query: 840  IRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIA 899
            I++R  R P+IGDKFSSRHGQKGV SQLWP  DMPFS  +G++PD+IINPHAFPSRMTI 
Sbjct: 927  IKYRVPRRPVIGDKFSSRHGQKGVLSQLWPSADMPFS-ESGIQPDVIINPHAFPSRMTIG 985

Query: 900  MLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGV 959
            M +ES+A K GSLHG   D+TPF  S + T GD             G+ L+  G+N+HG 
Sbjct: 986  MFVESLAGKAGSLHGLPQDSTPFQFSEETTAGDY-----------FGKQLQKAGYNFHGN 1034

Query: 960  EVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIR 1019
            E +YSG+ G E   +I+IG VYYQRLRHMV+DKFQVR+TG ++ +T QP+KGR +GGGIR
Sbjct: 1035 EPMYSGITGREFAADIYIGVVYYQRLRHMVNDKFQVRTTGPVNALTGQPVKGRAKGGGIR 1094

Query: 1020 FGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGS-----VLTATFIHPQKRAIRE 1074
             GEMERD+LLAHGAA+LL DRL  CSD   A +C  CGS     V  +  + P K    E
Sbjct: 1095 VGEMERDALLAHGAAFLLQDRLMNCSDSQRAWICRACGSFISTQVAVSQLLSPHKNPAME 1154

Query: 1075 IGGLPPARAPKK--------------VTCHACQ----------------TSK----GMET 1100
                  A A  K              V C  C                 T K    G +T
Sbjct: 1155 AVVQSTADAIAKPLSGVSALGGLAGIVRCRRCAREAVFDDPRAEVWEDGTGKRYVGGSDT 1214

Query: 1101 --VAMPYVFRYLAAELAAMNIKITLQL 1125
              VA+P V +YL  ELAAM IK+   +
Sbjct: 1215 TVVAVPGVLKYLDVELAAMGIKMRFHV 1241


>gi|426223601|ref|XP_004005963.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 3 [Ovis
            aries]
          Length = 996

 Score =  875 bits (2262), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/1058 (44%), Positives = 638/1058 (60%), Gaps = 72/1058 (6%)

Query: 77   MLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFR 136
            M+K++ C+L     + L+   EEA EMGGYFI+NG+E+V R +I+P++N+P++MVR  ++
Sbjct: 1    MVKSKLCNLYSLPPKALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMVRPKWK 60

Query: 137  DRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDT 196
             R  GYT   V + CVR++ S+V + L+YL NG+V L F  + + + LP+G  LKALV  
Sbjct: 61   SRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSF 120

Query: 197  NDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ 256
            +D +IF  L         KE  +     VS+ ++I++ E      +T+ Q L ++GE F+
Sbjct: 121  SDYQIFQELI------KGKEDDSFFRNSVSQMLRIVMEE----GCSTQKQVLNYLGERFR 170

Query: 257  PVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
              ++          AE +    I +HL  N +KF +L  M +KLF+L     + +NPDSL
Sbjct: 171  VKLNLPDWYPNEQAAEFLFNQCICIHLKSNTEKFYVLCLMTRKLFALAKGECMEENPDSL 230

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             NQE+L PG L  ++LKEKLE WL   K  I  + +      +  NL  I  +       
Sbjct: 231  MNQEVLTPGQLFLMFLKEKLEAWLVSIKIAIDKKSQKTNVSLNSENLMKIFSL-----GI 285

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             +    E +L TG L ++TGL   Q +G  V A++LNF+R++S FR VHRGA FA +RTT
Sbjct: 286  DLTKPFEYLLATGNLRSKTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTT 345

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
            +VR+LLPESWGFLCPVHTPDGEPCGL+NH+T+ C V +           S    SI  +L
Sbjct: 346  TVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAICEVVTQ----------SVYTASIPALL 395

Query: 497  IGVGMIPSLPKLVKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVI 552
              +G+ P     V   P    S    VLLDG ++G         +   LR  KV     I
Sbjct: 396  CSLGVTP-----VDGTPHRPYSECYPVLLDGVMIGWADKEIAPGIADSLRHFKVLREKRI 450

Query: 553  PDDLEVGYVPLS-LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEI 611
            P  +EV  +P++     YPGLYLFT+P + VRPV+N+ L  EE     LIG  EQ+FM +
Sbjct: 451  PPWMEVVLIPMTGKPSLYPGLYLFTTPCRLVRPVQNLELGKEE-----LIGTMEQIFMNV 505

Query: 612  RCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSV 671
               +        A   TH+E+ P  MLSV+AN  P+SDHNQSPRNMYQCQM KQTMGF +
Sbjct: 506  AIFED----EVLAGVTTHQELFPHSMLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPL 561

Query: 672  QALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILN 731
               + R+D KLY LQTPQ+P+VR   Y  Y +D YP GTNAIVAV++YTGYDMEDAMI+N
Sbjct: 562  LTFQDRSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVN 621

Query: 732  KSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMI 791
            K+S +RG  HG +Y++E IDLS+   + D       +  D + +   +D DGLP++G  +
Sbjct: 622  KASWERGFAHGSVYKSEFIDLSEKIKQGDDSLVFGVKAGDPRVMQK-LDDDGLPFIGAQL 680

Query: 792  HPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPII 850
              G+PY S  +  T        K  E+  VD + V   ++ N   K   I  R  RNP I
Sbjct: 681  KYGDPYYSYLNLNTGEGFVMYYKSKENCIVDNIKVCSNDTGNGKFKCVCITMRVPRNPTI 740

Query: 851  GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGG 910
            GDKF+SRHGQKG+ S+LWP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+A K  
Sbjct: 741  GDKFASRHGQKGILSRLWPVEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGKSA 799

Query: 911  SLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTE 970
            +LHG   DATPF  S           E  S ++  GEML+  G+NY+G E LYSG+ G E
Sbjct: 800  ALHGLCHDATPFIFS-----------EENSALEYFGEMLKAAGYNYYGTERLYSGISGLE 848

Query: 971  LTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLA 1030
            L  +IFIG VYYQRLRHMVSDKFQVR+TG  D++T QPI GR   GGIRFGEMERD+LLA
Sbjct: 849  LEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFGEMERDALLA 908

Query: 1031 HGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP---KKV 1087
            HG ++LLHDRL  CSD  VA VC  CGS+L+     P           PP+ +    +K 
Sbjct: 909  HGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKP-----------PPSWSALRNRKY 957

Query: 1088 TCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
            +C  C  S  ++T+++PYVFRY  AELAAMNIK+ L +
Sbjct: 958  SCALCNRSDTIDTISVPYVFRYFVAELAAMNIKVKLDI 995


>gi|365757915|gb|EHM99785.1| Rpa135p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
          Length = 1203

 Score =  875 bits (2262), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/1128 (43%), Positives = 683/1128 (60%), Gaps = 103/1128 (9%)

Query: 39   RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
            RQ   SY GKL+  +++  ++ G   + E  + G  PVML++ RCHL      +LV  KE
Sbjct: 127  RQRLTSYRGKLLLKLKWS-INNGEENLFEVRDCGGLPVMLQSNRCHLNKMSPYELVQHKE 185

Query: 99   EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
            E+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R   Y+   + IR VR+DQ+S
Sbjct: 186  ESDEIGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFANRGASYSHYGIQIRSVRQDQTS 245

Query: 159  VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKG 218
             T  L+YL +G V   F  +  EYL+P  ++LKAL  T+D EIF+ +             
Sbjct: 246  QTNVLHYLNDGQVTFRFSWRKNEYLVPAVMILKALCHTSDREIFDGII----------GN 295

Query: 219  AVGSPLVSERVKIILAEVQDL--SLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
             V    +++R++++L   +     L  R Q LQ++G+ F+ V       S   V + V+ 
Sbjct: 296  DVKDSFLTDRLELLLRGFKKRYPQLQNRTQVLQYLGDKFRVVFQASPDHSDLEVGQEVLD 355

Query: 277  DYIFVHL--NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKE 334
              + VHL  N N DKF +L+FM++KL+SLV      DNPD+ Q+QE+LL G L  + LKE
Sbjct: 356  RIVLVHLGKNGNQDKFRMLLFMIRKLYSLVAGECSPDNPDATQHQEVLLGGFLYGMILKE 415

Query: 335  KLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQ 394
            K++++L+     ++ +I N G   +F +   + KV+ +  ++ IG+ ++  L TG L +Q
Sbjct: 416  KIDEYLQNIIAQVRMDI-NRGMAINFKDKRYMSKVLMR-VNENIGSKMQYFLSTGNLVSQ 473

Query: 395  TGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHT 454
            +GLDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPVHT
Sbjct: 474  SGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHT 533

Query: 455  PDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPP 514
            PDG PCGLLNH    CR+++         D SK    I  +L  +G+ P+         P
Sbjct: 534  PDGSPCGLLNHFAHKCRIST------EQLDVSK----IPSILYSLGVAPASHTFAAG--P 581

Query: 515  AVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV-IPDDLEVGYVPLSLGGAYPGLY 573
            ++  V +DG+++G I   + + +   LR  KV   +  +P DLE+GYVP S  G YPGLY
Sbjct: 582  SLCCVQIDGKIIGWISHEQGKIIADTLRYWKVEGKTPGLPVDLEIGYVPPSTRGQYPGLY 641

Query: 574  LFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIH 633
            LF    + +RPVR + L  E+     ++GPFEQV+M I         + N    TH E  
Sbjct: 642  LFGGHSRMLRPVRYLPLDKED-----IVGPFEQVYMNIAVTP--QEIQNNVH--THVEFT 692

Query: 634  PTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIV 693
            PT +LS++ANLTP+SD NQSPRNMYQCQM KQTMG    AL  R+D KLY LQT QTPIV
Sbjct: 693  PTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQTGQTPIV 752

Query: 694  RTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLS 753
            + N Y  YG+D +P G NA+VAV++YTGYDM+DAMI+NKS+ +RG  +G +Y+TE +DL+
Sbjct: 753  KANLYDDYGMDNFPNGFNAVVAVISYTGYDMDDAMIINKSADERGFGYGTMYKTEKVDLA 812

Query: 754  DDGNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTN 811
             + ++ D   + F    D   K     +D DGLPY+G  +  G+P C+ +D T N  +  
Sbjct: 813  LNRSRGDPITQHFGFGNDEWPKEWLEKLDEDGLPYIGTYVEEGDPICAYFDDTLNKTKIK 872

Query: 812  SRKGSESVFVDYVAV--DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWP 869
            +   SE  +++ V +  D  N     Q  +I++R  R P IGDKFSSRHGQKGVCS+ WP
Sbjct: 873  TYHSSEPAYIEEVNLIGDESNKFQELQTVSIKYRIRRTPQIGDKFSSRHGQKGVCSRKWP 932

Query: 870  DIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKT 929
             IDMPFS  TG++PD+IINPHAFPSRMTI M +ES+A K G+LHG   D+TP+       
Sbjct: 933  TIDMPFSE-TGIQPDIIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPWI------ 985

Query: 930  NGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMV 989
                  +E  +  D  G+ L   G+NYHG E +YSG  G EL  +I++G VYYQRLRHMV
Sbjct: 986  -----FNEDDTPADYFGDQLAKAGYNYHGNEPMYSGATGEELRADIYVGVVYYQRLRHMV 1040

Query: 990  SDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHV 1049
             DKFQVRSTG ++ +T QP+KGRKR GGIR GEMERD+L+ HG ++LL DRL   SDY  
Sbjct: 1041 DDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIGHGTSFLLQDRLLNSSDYTQ 1100

Query: 1050 ADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHAC----------------- 1092
            A VC  CGS+LT       ++++  IG +        V C  C                 
Sbjct: 1101 ASVCRECGSILTT------QQSVPRIGSI------STVCCRRCSMRFEDAKKLLTKSEDG 1148

Query: 1093 --------------QTSK---GME--TVAMPYVFRYLAAELAAMNIKI 1121
                          Q +K   G E  TVA+P+V +YL +EL+AM I++
Sbjct: 1149 ENIFIDDSQIWEDGQGNKFVGGNETTTVAIPFVLKYLDSELSAMGIRL 1196


>gi|171696212|ref|XP_001913030.1| hypothetical protein [Podospora anserina S mat+]
 gi|170948348|emb|CAP60512.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1234

 Score =  875 bits (2262), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/1137 (42%), Positives = 686/1137 (60%), Gaps = 103/1137 (9%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGS-PVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
            CR+  +SY GKL A +E++  +  +   VRE    GQ P+M+K+ +CHL+     +LV  
Sbjct: 118  CRERHVSYRGKLTAVLEYRINNGDAHEFVRE---LGQMPIMVKSNKCHLENNSPAQLVER 174

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
            KEE+ E+GGYF++NG+E++ R +++ K+N+P+++ R SF +R   YT   +++R VR D+
Sbjct: 175  KEESEELGGYFVINGIEKIIRLLLMNKRNFPLAITRPSFTNRGPSYTPHGIIVRSVRPDE 234

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
            +S T  L+YL +G+V   F  +  EYL+PV ++LKALV+TND EIF  L      K    
Sbjct: 235  TSQTNVLHYLNDGNVTFRFSWRKNEYLVPVMMILKALVETNDREIFESLVGPPTSK---- 290

Query: 217  KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
               V +  +++RV+++L   +  +L T+ Q   ++G+ F+ V+    + + Y V    +R
Sbjct: 291  --GVENTFLTDRVELLLRTYKTYNLYTKKQTRAYLGQKFRVVLGVPDTMTDYEVGTEFLR 348

Query: 277  DYIFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
              + VHL  N+       DKF +L+FM +KL++LV      DNPD++QNQEILL G L  
Sbjct: 349  KVVLVHLGCNDVTEEQDTDKFKMLLFMCRKLYALVAGDCAVDNPDAVQNQEILLGGFLYG 408

Query: 330  IYLKEKLEDWLRKG-KKLIQDEIENNGKKFDFFNLANIKKVME----KNPSKQIGTSIET 384
            + LKE+LED L    +  ++D +  N    D F   + +K       +  ++ IG ++E 
Sbjct: 409  MILKERLEDLLSTALRGALRDHLRRNPT--DSFVSESFRKQFPGHIFRKTNENIGNALEY 466

Query: 385  MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPE 444
             L TG L + +GLDLQQ +G+TV AE+LNFLRFIS FR VHRG+ FA L+TT+VRKLLPE
Sbjct: 467  FLSTGNLQSPSGLDLQQVSGFTVVAEKLNFLRFISHFRMVHRGSFFAQLKTTTVRKLLPE 526

Query: 445  SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
            SWGFLCPVHTPDG PCGLLNH    C++ +              + + +  + GV +   
Sbjct: 527  SWGFLCPVHTPDGSPCGLLNHFAHKCKITT--------------KAADVSAVPGVLLELG 572

Query: 505  LPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS 564
            +     +     + V+LDG+VVG       + +   LR+LKV     IP +LE+GYVP S
Sbjct: 573  VNNYSSAATTESVVVMLDGKVVGWCAPQNAKPLADTLRQLKVEGGHGIPLELEIGYVPTS 632

Query: 565  LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDG----GDGG 620
             GG+YPG+Y+ ++  + VRPV+ ++L  E+     ++GP+EQ +M I C +     GD  
Sbjct: 633  NGGSYPGIYMASNTSRMVRPVKYLALNKED-----MVGPYEQPYMSIACVEQEIVPGD-- 685

Query: 621  RRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQ 680
                  +TH E  PT +LS++AN+TP+SD NQSPRNMYQCQM KQTMG    AL  R D 
Sbjct: 686  ------STHVEFDPTNILSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPGAALAHRTDN 739

Query: 681  KLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMC 740
            K+Y +QT QTP+VR+  +  YG D +P G NA+VAV++YTGYDM+DAMI+NKS+ +RG  
Sbjct: 740  KMYRIQTGQTPVVRSPLHNTYGFDNFPNGFNAVVAVISYTGYDMDDAMIINKSAHERGFG 799

Query: 741  HGQIYQTETIDLSDDG--NKVDRGQKLFRRNKDA---KSLHSVIDSDGLPYVGQMIHPGE 795
            HG IY+T+ I L DD          K+F     +    S   ++D DGLPYVG+++  G+
Sbjct: 800  HGSIYKTKKISLKDDSRTRSSKTTTKMFGFAPGSPIRASDREMLDEDGLPYVGRLVREGD 859

Query: 796  PYCSIYDKTTN-SWRTNSRKG---------SESVFVDYVAVDMKNSKNLP-QKANIRFRH 844
               + +  + + S +  +R G         +E  F++ V V   ++ N P Q  +I+ R 
Sbjct: 860  IIAAWHTVSADYSGKLVNRDGITHWERYKEAEDAFIEEVRVIGSDTGNEPLQTLSIKLRV 919

Query: 845  TRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLES 904
             R+P+IGDKFSSRHGQKGVCSQ WP +DMPFS  TG++PD+IINPHAFPSRMTI M +ES
Sbjct: 920  PRSPVIGDKFSSRHGQKGVCSQKWPAVDMPFSE-TGIQPDVIINPHAFPSRMTIGMFVES 978

Query: 905  VAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYS 964
            +A K G+LHG   D+TPF  S           E     D  G  L   G+NYHG E +YS
Sbjct: 979  LAGKAGALHGLAQDSTPFKFS-----------EENMAADYFGHQLMKAGYNYHGNEPMYS 1027

Query: 965  GVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEME 1024
            G+ G E  C+I+IG VYYQRLRHMV+DK+QVR+TG +   T QPIKGRK+GGGIR GEME
Sbjct: 1028 GITGEEFMCDIYIGVVYYQRLRHMVNDKYQVRTTGPVVPTTGQPIKGRKKGGGIRVGEME 1087

Query: 1025 RDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLT-----ATFIHPQKRA-------- 1071
            RD+LLAHG A+LL DRL  CSDY  + +C  CGS L      + FI  +K+         
Sbjct: 1088 RDALLAHGTAFLLQDRLLNCSDYSKSWICRDCGSFLAVQPTVSPFIGKRKQVGTVRCRNC 1147

Query: 1072 ---IREIGGLPPARAPKKV--TCHACQTSKGMET--VAMPYVFRYLAAELAAMNIKI 1121
               + +I  L   +   ++       Q   G  T  V +P   +YL  ELAAM +K+
Sbjct: 1148 AQRLDQIEDLDLMKLDGEIWEDGQGVQWIGGENTTMVVVPGALKYLDVELAAMGVKL 1204


>gi|147899772|ref|NP_001080005.1| polymerase (RNA) I polypeptide B, 128kDa [Xenopus laevis]
 gi|37589362|gb|AAH59304.1| MGC68946 protein [Xenopus laevis]
          Length = 1134

 Score =  875 bits (2261), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/1168 (41%), Positives = 689/1168 (58%), Gaps = 121/1168 (10%)

Query: 11   PLRELVRHHIESFDYMLDEGLS--------------------EMFD-------------- 36
            PL+E+ R HI+SF+  + EGLS                    ++ D              
Sbjct: 34   PLQEITRAHIDSFNQAMTEGLSLAVQAMKPLEFTYRNDKVALQIVDAVLSHPLVPKGSIC 93

Query: 37   --------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGA 88
                     CR  + +Y GKL ADV +        ++++    GQFP+M+K++ C+L   
Sbjct: 94   KEQKIYPAECRGRRSTYRGKLTADVSWSLNGMQKGIIKQ--TLGQFPIMVKSKFCNLYDL 151

Query: 89   DSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVV 148
            + ++L+   EE  EMGGYFI+NG+E+V R +I+P++N+P++M+R  +++R  GYT   + 
Sbjct: 152  NPKQLLEHHEEEQEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKNRGPGYTQYGIS 211

Query: 149  IRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
            IRCV+ + ++V + L+YL NGSV + F  Q + + +P+G  LKALV+ +D +IF  L   
Sbjct: 212  IRCVQDEHTAVNMNLHYLENGSVMVNFIYQKELFFIPLGFALKALVEFSDYQIFTELI-- 269

Query: 209  YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYY 268
                  KE  +     +++ +++++ E        +   L+++GE F+      +  +  
Sbjct: 270  ----KGKEDNSFYRDCMTQMLRVVVEE----GCHNQKNVLKYLGERFRVKFYLPEWYTDE 321

Query: 269  AVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
              AE +I   I +HL  N +KF +L  M QKLF+      + +NPDSL  QE+L PG L+
Sbjct: 322  QAAEFLISHCICIHLKTNVEKFYMLCMMTQKLFTFAKDGCMEENPDSLMYQEVLTPGQLL 381

Query: 329  TIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKT 388
             ++LKEK+E WL  G KL    ++    K        + K++    +  +    E +L T
Sbjct: 382  LMFLKEKMESWLL-GVKL---NLDKRAHKLVDLTTETMGKILTS--TSDLTKLCEYLLAT 435

Query: 389  GRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGF 448
            G L ++TGL + Q +G  V A++LNF+R++S FR VHRGA+FA +RTTSVR+LLPESWGF
Sbjct: 436  GNLRSKTGLGMLQSSGLVVVADKLNFIRYLSHFRCVHRGAAFAKMRTTSVRRLLPESWGF 495

Query: 449  LCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKL 508
            LCPVHTPDGEPCGL+NHMT+ C + +           +   TS+  +L  +GM P     
Sbjct: 496  LCPVHTPDGEPCGLMNHMTAACEIVTQ----------TSYNTSLPLLLCSLGMTPVDGAA 545

Query: 509  VKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGA 568
             KS       V+LDG +VG + ++    +V  LR  KV     +P   E+  +P++   +
Sbjct: 546  GKSFADCY-PVMLDGAMVGWVENNVAPGLVNALRIYKVKHDKNVPPWTEIVLIPMTGKAS 604

Query: 569  -YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPA 627
             YPGL++FT+P + VRP+RN++L  EE     L+G  EQVF+ +   +G         P 
Sbjct: 605  LYPGLFVFTTPCRLVRPIRNLALGKEE-----LLGTLEQVFLNVAIYEG------EIVPG 653

Query: 628  --THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHL 685
              TH+E+ P  MLSVVAN  P+SDHNQSPRNMYQCQM KQTMGF +   + R+D KLY L
Sbjct: 654  ETTHQELFPHSMLSVVANFIPFSDHNQSPRNMYQCQMGKQTMGFPLMTYQDRSDNKLYRL 713

Query: 686  QTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIY 745
            QTPQ+P+VR + Y  Y +D YP GTNAIVAV++YTGYDMEDAM+LNKSS +RG  HG +Y
Sbjct: 714  QTPQSPLVRPSMYDYYEMDNYPVGTNAIVAVISYTGYDMEDAMVLNKSSWERGFAHGSVY 773

Query: 746  QTETIDLSDDGNKVDRGQK--LFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDK 803
            +T+ +DLS    K+  G+   +F    D + +   +D+DGLP VG ++  G+PY    + 
Sbjct: 774  KTDHVDLS---KKLKDGEDNIVFGIKPDDERVKGRLDNDGLPPVGAVLQFGDPYYGYLNF 830

Query: 804  TTNSWRTNSRKGSESVFVDYVAV---DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQ 860
             T        K  E+  VD + +   D+   K   +   I  R  RNP IGDKF+SRHGQ
Sbjct: 831  NTGESFVAYYKSKENCVVDNIKICSNDIGFGKF--KSVCITMRIPRNPTIGDKFASRHGQ 888

Query: 861  KGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDAT 920
            KG+ S+LWP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+A K  +LHG   DAT
Sbjct: 889  KGILSRLWPSEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDAT 947

Query: 921  PFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPV 980
            PF  S           E  S ++  GEMLR  G+N++G E LYSG+ G EL  +IFIG V
Sbjct: 948  PFTFS-----------EENSALEYFGEMLRAGGYNFYGTEKLYSGISGLELEADIFIGVV 996

Query: 981  YYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDR 1040
            YYQRLRHMVSDKFQVR+TG  D++T QP+ GR   GGIRFGEMERD+LLAHG ++LLHDR
Sbjct: 997  YYQRLRHMVSDKFQVRTTGARDKVTNQPVGGRNIQGGIRFGEMERDALLAHGTSFLLHDR 1056

Query: 1041 LHTCSDYHVADVCSLCGSVLTATFIH---PQKRAIREIGGLPPARAPKKVTCHACQTSKG 1097
            L  CSD   A +C  CGS L A F+    P   +IR           +K  C  C  +  
Sbjct: 1057 LFHCSDRSTAHMCVECGS-LIAPFLEKPPPSWSSIRN----------RKHQCVVCNRTDT 1105

Query: 1098 METVAMPYVFRYLAAELAAMNIKITLQL 1125
            +E V++PYVFRY  AELAAMNI + L +
Sbjct: 1106 VEAVSVPYVFRYFVAELAAMNINVKLSV 1133


>gi|256270098|gb|EEU05336.1| Rpa135p [Saccharomyces cerevisiae JAY291]
          Length = 1203

 Score =  875 bits (2260), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/1116 (43%), Positives = 684/1116 (61%), Gaps = 79/1116 (7%)

Query: 39   RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
            RQ   SY GKL+  +++  ++ G   + E  + G  PVML++ RCHL      +LV  KE
Sbjct: 127  RQRLTSYRGKLLLKLKWS-VNNGEENLFEVRDCGGLPVMLQSNRCHLNKMSPYELVQHKE 185

Query: 99   EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
            E+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R   Y+   + IR VR DQ+S
Sbjct: 186  ESDEIGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFANRGASYSHYGIQIRSVRPDQTS 245

Query: 159  VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKG 218
             T  L+YL +G V   F  +  EYL+PV ++LKAL  T+D EIF+ +             
Sbjct: 246  QTNVLHYLNDGQVTFRFSWRKNEYLVPVVMILKALCHTSDREIFDGII----------GN 295

Query: 219  AVGSPLVSERVKIILAEVQDL--SLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
             V    +++R++++L   +     L  R Q LQ++G+ F+ V      +S   V + V+ 
Sbjct: 296  DVKDSFLTDRLELLLRGFKKRYPHLQNRTQVLQYLGDKFRVVFQASPDQSDLEVGQEVLD 355

Query: 277  DYIFVHL--NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKE 334
              + VHL  + + DKF +L+FM++KL+SLV      DNPD+ Q+QE+LL G L  + LKE
Sbjct: 356  RIVLVHLGKDGSQDKFRMLLFMIRKLYSLVAGECSPDNPDATQHQEVLLGGFLYGMILKE 415

Query: 335  KLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQ 394
            K++++L+     ++ +I N G   +F +   + +V+ +  ++ IG+ ++  L TG L +Q
Sbjct: 416  KIDEYLQNIIAQVRMDI-NRGMAINFKDKRYMSRVLMR-VNENIGSKMQYFLSTGNLVSQ 473

Query: 395  TGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHT 454
            +GLDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPVHT
Sbjct: 474  SGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHT 533

Query: 455  PDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPP 514
            PDG PCGLLNH    CR+++         D S+    I  +L  +G+ P+         P
Sbjct: 534  PDGSPCGLLNHFAHKCRISTQQS------DVSR----IPSILYSLGVAPASHTFAAG--P 581

Query: 515  AVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV-IPDDLEVGYVPLSLGGAYPGLY 573
            ++  V +DG+++G +   + + +   LR  KV   +  +P DLE+GYVP S  G YPGLY
Sbjct: 582  SLCCVQIDGKIIGWVSHEQGKIIADTLRYWKVEGKTPGLPIDLEIGYVPPSTRGQYPGLY 641

Query: 574  LFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIH 633
            LF    + +RPVR + L  E+     ++GPFEQV+M I         + N    TH E  
Sbjct: 642  LFGGHSRMLRPVRYLPLDKED-----IVGPFEQVYMNIAVTP--QEIQNNVH--THVEFT 692

Query: 634  PTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIV 693
            PT +LS++ANLTP+SD NQSPRNMYQCQM KQTMG    AL  R+D KLY LQT QTPIV
Sbjct: 693  PTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQTGQTPIV 752

Query: 694  RTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLS 753
            + N Y  YG+D +P G NA+VAV++YTGYDM+DAMI+NKS+ +RG  +G +Y+TE +DL+
Sbjct: 753  KANLYDDYGMDNFPNGFNAVVAVISYTGYDMDDAMIINKSADERGFGYGTMYKTEKVDLA 812

Query: 754  DDGNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTN 811
             + N+ D   + F    D   K     +D DGLPY+G  +  G+P C+ +D T N  +  
Sbjct: 813  LNRNRGDPITQHFGFGNDEWPKEWLEKLDEDGLPYIGTYVEEGDPICAYFDDTLNKTKIK 872

Query: 812  SRKGSESVFVDYVAV--DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWP 869
            +   SE  +++ V +  D  N     Q  +I++R  R P IGDKFSSRHGQKGVCS+ WP
Sbjct: 873  TYHSSEPAYIEEVNLIGDESNKFQELQTVSIKYRIRRTPQIGDKFSSRHGQKGVCSRKWP 932

Query: 870  DIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKT 929
             IDMPFS  TG++PD+IINPHAFPSRMTI M +ES+A K G+LHG   D+TP+       
Sbjct: 933  TIDMPFSE-TGIQPDIIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPWI------ 985

Query: 930  NGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMV 989
                  +E  +  D  GE L   G+NYHG E +YSG  G EL  +I++G VYYQRLRHMV
Sbjct: 986  -----FNEDDTPADYFGEQLAKAGYNYHGNEPMYSGATGEELRADIYVGVVYYQRLRHMV 1040

Query: 990  SDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHV 1049
            +DKFQVRSTG ++ +T QP+KGRKR GGIR GEMERD+L+ HG ++LL DRL   SDY  
Sbjct: 1041 NDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIGHGTSFLLQDRLLNSSDYTQ 1100

Query: 1050 ADVCSLCGSVLTATFIHPQKRAIREIGG-------------LPPARAPKKVTCHACQTSK 1096
            A VC  CGS+LT     P+  +I  +               L  +   +K+     Q  +
Sbjct: 1101 ASVCRECGSILTTQQSVPRIGSISTVCCRRCSMRFEDAKKLLTKSEDGEKIFIGDSQIWE 1160

Query: 1097 ---------GME--TVAMPYVFRYLAAELAAMNIKI 1121
                     G E  TVA+P+V +YL +EL+AM I++
Sbjct: 1161 DGQGNKFVGGNETTTVAIPFVLKYLDSELSAMGIRL 1196


>gi|403215483|emb|CCK69982.1| hypothetical protein KNAG_0D02320 [Kazachstania naganishii CBS 8797]
          Length = 1202

 Score =  874 bits (2259), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/1087 (43%), Positives = 670/1087 (61%), Gaps = 86/1087 (7%)

Query: 72   GQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMV 131
            G  PVML++ RCHL       LV  KEE+ E+GGYFI+NG+E++ R +I+ ++N+PM+++
Sbjct: 158  GGLPVMLQSNRCHLNKLSPYDLVQQKEESDEVGGYFIVNGIEKLIRMLIVQRRNHPMAII 217

Query: 132  RSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLK 191
            R SF +R   Y+   + IR VR DQ+S T  L+YL +G V   F  +  EYL+P  ++LK
Sbjct: 218  RPSFTNRGASYSAFGIQIRAVRPDQTSQTNVLHYLNDGQVTFRFSWRKNEYLIPAVMILK 277

Query: 192  ALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPL----VSERVKIILAEVQDL--SLTTRL 245
            AL DT+D EIF+              G VGS L    +++R++++L   +    +L  R 
Sbjct: 278  ALCDTSDREIFD--------------GIVGSDLSNSFLTDRLELLLRGFKKRYPTLQNRT 323

Query: 246  QCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLND--NNDKFNLLIFMLQKLFSL 303
            Q LQ++G+ F+ V      ++ Y V + V+   + VHL +  N DK  LL+FM++KL+SL
Sbjct: 324  QVLQYLGDKFRFVFQASADKTDYEVGQEVLNRIVLVHLGNGNNEDKSKLLLFMIRKLYSL 383

Query: 304  VDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNL 363
            V      DNPD+ Q+QE+LL G L  + +KEK++++L+     I+ +I N G   +F + 
Sbjct: 384  VAGECSPDNPDATQHQEVLLGGFLYGMIIKEKIDEYLQNIISQIRADI-NRGMAINFKDR 442

Query: 364  ANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRA 423
              + +V+ +  ++ IG+ ++  L TG L +Q+GLDLQQ +GYTV AE++NF RFIS FR 
Sbjct: 443  KYMSRVLMR-VNENIGSKLQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYRFISHFRM 501

Query: 424  VHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIR 483
            VHRG+ FA L+TT+VRKLLPESWGFLCPVHTPDG PCGLLNH    C +++   ++ ++ 
Sbjct: 502  VHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHFAHKCSIST---TQSDV- 557

Query: 484  DFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRR 543
                  T +  +L  +G + S      +GP ++  V LDGR++G    ++ + +   LR 
Sbjct: 558  ------TKVPSLLYSLG-VSSASHTFAAGP-SLCCVQLDGRIIGWTSHAQGKIIADTLRF 609

Query: 544  LKVSAAS-VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIG 602
            LKV   +  +P DLE+GYVP S  G YPGLYLF    + +RPVR + L  E+     ++G
Sbjct: 610  LKVEGKTDGLPLDLEIGYVPPSTKGQYPGLYLFAGHSRMMRPVRYLPLDKED-----IVG 664

Query: 603  PFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQM 662
            PFEQV+M I           ++    H E  PT +LS++ANLTP+SD NQSPRNMYQCQM
Sbjct: 665  PFEQVYMNIAVTQQEIQNNIHS----HVEFTPTNILSILANLTPFSDFNQSPRNMYQCQM 720

Query: 663  AKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGY 722
             KQTMG    AL  R+D KLY LQ+ QTPIV+ N Y  YG+D +P GTNA+VAV++YTGY
Sbjct: 721  GKQTMGTPGVALCHRSDNKLYRLQSGQTPIVKANLYDDYGMDNFPNGTNAVVAVISYTGY 780

Query: 723  DMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKD--AKSLHSVID 780
            DM+DAMI+NKS+ +RG  +G +Y+ E IDLS + N+ D   + F    D   K   + +D
Sbjct: 781  DMDDAMIINKSADERGFGYGTMYKVEKIDLSLNRNRGDPVSQHFGFGSDDWPKEWLNKLD 840

Query: 781  SDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAV--DMKNSKNLPQKA 838
             DGLP++G  +  G+P C+ +D   N  +  +   SE  +++ V +  D  N     Q  
Sbjct: 841  DDGLPHIGTYVEEGDPICAYFDDVVNKTKIKTYHSSEPGYIEEVNLIGDESNKFQELQTV 900

Query: 839  NIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTI 898
            +I++R  R P IGDKFSSRHGQKGVCS+ WP +DMPFS  TG++PD+IINPHAFPSRMTI
Sbjct: 901  SIKYRIRRTPQIGDKFSSRHGQKGVCSRKWPTVDMPFSE-TGIQPDVIINPHAFPSRMTI 959

Query: 899  AMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHG 958
             M +ES+A K G+LHG   DATP+             +E  +  D  GE L   G+NYHG
Sbjct: 960  GMFVESLAGKAGALHGIAQDATPWI-----------FNEDDTPADYFGEQLAKAGYNYHG 1008

Query: 959  VEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGI 1018
             E +YSG  G EL  +I++G VYYQRLRHMV+DKFQVRSTG ++ +T QP+KGRKR GGI
Sbjct: 1009 NEPMYSGATGEELRVDIYVGVVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRHGGI 1068

Query: 1019 RFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQ---------- 1068
            R GEMERD+L+ HG ++LL DRL  CSDY    VC  CGS+LT     P+          
Sbjct: 1069 RVGEMERDALIGHGTSFLLQDRLLNCSDYTQTPVCRECGSILTTQQTVPRIGAPSTVCCR 1128

Query: 1069 ---------KRAIREIGG-----LPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAEL 1114
                     K+ + + GG     +  ++  +    H         T+A+P+V +YL +EL
Sbjct: 1129 RCAVKFDDAKKMLSQYGGEETIFIDDSQIWEDGQGHKFVGGNNTTTIAVPFVLKYLDSEL 1188

Query: 1115 AAMNIKI 1121
             AM IK+
Sbjct: 1189 TAMGIKL 1195


>gi|261199570|ref|XP_002626186.1| DNA-directed RNA polymerase I polypeptide 2 [Ajellomyces dermatitidis
            SLH14081]
 gi|239594394|gb|EEQ76975.1| DNA-directed RNA polymerase I polypeptide 2 [Ajellomyces dermatitidis
            SLH14081]
 gi|239615559|gb|EEQ92546.1| DNA-directed RNA polymerase I polypeptide 2 [Ajellomyces dermatitidis
            ER-3]
 gi|327354710|gb|EGE83567.1| DNA-directed RNA polymerase [Ajellomyces dermatitidis ATCC 18188]
          Length = 1243

 Score =  874 bits (2258), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/1173 (42%), Positives = 683/1173 (58%), Gaps = 137/1173 (11%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDA-GSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
             CR+   +Y G+L A +E++  +      VRE    GQ P+ML++ RCHL+ A  ++LV 
Sbjct: 126  ECRERHATYRGRLRARLEYKVNNGEWKESVRE---LGQVPIMLRSNRCHLEKASPEQLVQ 182

Query: 96   LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
             KEE+ E+GGYFI+NG E++ R +I+ ++N+PM++VR+SF  R   YT   + IR VR D
Sbjct: 183  RKEESEELGGYFIVNGNEKLIRMLIVGRRNFPMAIVRNSFTKRGPTYTKYGIQIRSVRPD 242

Query: 156  QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
            Q+S T  L+YL +G+V   F  +  E+L+PV ++LKALV+TND +IF  L        ++
Sbjct: 243  QTSQTNVLHYLSDGNVTFRFSWRKNEFLVPVAMILKALVETNDRDIFERLVG------RE 296

Query: 216  EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
                + +  V++RV+++L   +   L  R     ++GE F+PV+         AV    +
Sbjct: 297  GSKGIQNSFVTDRVELLLRTYKGYGLHGRDDTRAYLGEKFRPVLGMPADMPDEAVGTEFL 356

Query: 276  RDYIFVHLND-------NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
            R  +  HL +       +NDKFN+++FM++KL++LV      DNPD++ NQE+LL G L 
Sbjct: 357  RKVVLPHLGNQNVTESQDNDKFNMILFMIRKLYTLVAGDCAPDNPDAISNQEVLLGGFLY 416

Query: 329  TIYLKEKLEDWLRKGKKLIQD-EIENNGKKFD--FFNLANIKKVMEKNPSKQIGTSIETM 385
             + LKE+LE+WLR    + +D    N    F    F    + +++ +  ++ IG ++E  
Sbjct: 417  GMLLKERLEEWLRSFGPVARDWAFRNQNAPFSDPRFEKEFLSRIVTRT-NENIGGALEYF 475

Query: 386  LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
            L TG L + TGLDLQQ +GYTV AE++NF RFIS FR +HRG+ FA L+TT+VRKLLPES
Sbjct: 476  LSTGNLVSPTGLDLQQPSGYTVIAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPES 535

Query: 446  WGFLCPVHTPDGEPCGLLNHMTSTCRVA-SYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
            WGFLCPVHTPDG PCGLLNH+   C +A S  D  G           + +V+  +G+   
Sbjct: 536  WGFLCPVHTPDGSPCGLLNHLAHKCEIATSNLDVSG-----------VPQVISNLGVTSE 584

Query: 505  LPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS 564
                +       + V LDGR++G     +   +   LR  KV     +P +LE+GYVP S
Sbjct: 585  SSVALDES----VVVQLDGRILGYCSPKQARMISDTLRYWKVEGHRSLPVELEIGYVPNS 640

Query: 565  LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRN 623
              G YPG+YLF+   + +RPV+ + L       ++ +GP EQ +MEI C P     G   
Sbjct: 641  NRGQYPGIYLFSQCARMLRPVKYLPL-----DKLDYVGPLEQPYMEIACLPSDITSG--- 692

Query: 624  AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
               +TH E  PT +LS+VAN+TP+SD NQSPRNMYQCQM+KQ MG    ++++R D KLY
Sbjct: 693  --VSTHVEFDPTHILSIVANMTPFSDFNQSPRNMYQCQMSKQAMGTPGSSMEYRTDNKLY 750

Query: 684  HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
             LQT Q+P+VR+  Y  YG+D +P G NA+VAVL+YTGYDM+DAMI+NKS+ DRG   G 
Sbjct: 751  RLQTGQSPVVRSPLYNSYGLDNFPNGMNAVVAVLSYTGYDMDDAMIINKSAHDRGFGWGT 810

Query: 744  IYQTETIDLSDDGNKVDRGQKLFRRNKD-----------AKSLHSVIDSDGLPYVGQMIH 792
            IY+T+   L D   K  RG+   RR                     +D DGLP++G  + 
Sbjct: 811  IYKTKIYSLDD---KESRGRGKARREVSKLFGFAPGGLVKGEWRDALDEDGLPHIGARVT 867

Query: 793  PGEPYCSI----YDKTTNSWRTNSR-------KGSESVFVDYVAVDMKNSKNLP-QKANI 840
             G    +     +D  +NS+    R       K +E  +VD V +    +   P Q  ++
Sbjct: 868  EGSLVAAWHTVRFDPVSNSYVNIDRQTHFLKYKDTEEGYVDSVRILGSETGGDPCQALSV 927

Query: 841  RFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAM 900
            +FR  R P+IGDKFSSRHGQKGVCSQLWP IDMPFS  TG++PD+IINPHAFPSRMTI M
Sbjct: 928  KFRIPRKPLIGDKFSSRHGQKGVCSQLWPAIDMPFS-ETGIQPDIIINPHAFPSRMTIGM 986

Query: 901  LLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVE 960
             +ES+A K G+LHG   DATPF  S + T GD             GE LR  G+N+HG E
Sbjct: 987  FIESLAGKAGALHGLAQDATPFRFSEENTAGDF-----------FGEQLRKAGYNFHGNE 1035

Query: 961  VLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRF 1020
             +YSG+ G E   +I++G VYYQRLRHMV+DKFQVR+TG ++ +T QP+KGR +GGGIR 
Sbjct: 1036 PMYSGITGREFAADIYLGVVYYQRLRHMVNDKFQVRTTGPVNALTGQPVKGRAKGGGIRV 1095

Query: 1021 GEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLT-----ATFIHPQKR----- 1070
            GEMERDSLLAHGAA+LL DRL  CSD   + +C  CGS L+     +  + P K      
Sbjct: 1096 GEMERDSLLAHGAAFLLQDRLMNCSDTTRSWICRTCGSFLSTQVAVSKLMAPSKNPAMAA 1155

Query: 1071 --------------AIREIGGLPPARAPKKVTCHACQTSK-------------------- 1096
                          A+  +GG         V C  C                        
Sbjct: 1156 VAKSSSSGLARPGGAVSALGG-----TAGIVRCRRCAREAIFDDPRAEVWEDGEGKRFVG 1210

Query: 1097 GMET--VAMPYVFRYLAAELAAMNIKITLQLGD 1127
            G +T  VA+P V +YL  ELAAM I++T ++ +
Sbjct: 1211 GDDTTVVAVPGVLKYLDVELAAMGIRMTFKVNN 1243


>gi|221039778|dbj|BAH11652.1| unnamed protein product [Homo sapiens]
          Length = 996

 Score =  874 bits (2257), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/1058 (44%), Positives = 640/1058 (60%), Gaps = 72/1058 (6%)

Query: 77   MLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFR 136
            M+K++ C+L+    Q L+   EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R  ++
Sbjct: 1    MVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWK 60

Query: 137  DRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDT 196
             R  GYT   V + CVR++ S+V + L+YL NG+V L F  + + + LP+G  LKALV  
Sbjct: 61   TRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSF 120

Query: 197  NDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ 256
            +D +IF  L         KE  +     VS+ ++I++ E      +T+ Q L ++GE F+
Sbjct: 121  SDYQIFQELI------KGKEDDSFLRNSVSQMLRIVMEE----GCSTQKQVLNYLGECFR 170

Query: 257  PVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
              ++          AE +    I +HL  N +KF +L  M +KLF+L     + DNPDSL
Sbjct: 171  VKLNVPDWYPNEQAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSL 230

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             NQE+L PG L  ++LKEKLE WL   K     + +      +  NL  I  +       
Sbjct: 231  VNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMRIFTM-----GI 285

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             +    E +  TG L ++TGL L Q +G  V A++LNF+R++S FR VHRGA FA +RTT
Sbjct: 286  DLTKPFEYLFATGNLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTT 345

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
            +VR+LLPESWGFLCPVHTPDGEPCGL+NH+T+ C V + +              SI  +L
Sbjct: 346  TVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQF----------VYTASIPALL 395

Query: 497  IGVGMIPSLPKLVKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVI 552
              +G+ P     +   P    S    VLLDG +VG +       +   LR  KV     I
Sbjct: 396  CNLGVTP-----IDGAPHRSYSECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRI 450

Query: 553  PDDLEVGYVPLS-LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEI 611
            P  +EV  +P++     YPGL+LFT+P + VRPV+N++L  EE     LIG  EQ+FM +
Sbjct: 451  PPWMEVVLIPMTGKPSLYPGLFLFTTPCRLVRPVQNLALGKEE-----LIGTMEQIFMNV 505

Query: 612  RCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSV 671
               +        A   TH+E+ P  +LSV+AN  P+SDHNQSPRNMYQCQM KQTMGF +
Sbjct: 506  AIFED----EVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPL 561

Query: 672  QALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILN 731
               + R+D KLY LQTPQ+P+VR + Y  Y +D YP GTNAIVAV++YTGYDMEDAMI+N
Sbjct: 562  LTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVN 621

Query: 732  KSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMI 791
            K+S +RG  HG +Y++E IDLS+   + D       +  D + L   +D DGLP++G  +
Sbjct: 622  KASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQK-LDDDGLPFIGAKL 680

Query: 792  HPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPII 850
              G+PY S  +  T        K  E+  VD + V   ++ +   K   I  R  RNP I
Sbjct: 681  QYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTI 740

Query: 851  GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGG 910
            GDKF+SRHGQKG+ S+LWP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+A K  
Sbjct: 741  GDKFASRHGQKGILSRLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGKSA 799

Query: 911  SLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTE 970
            +LHG   DATPF  S           E  S ++  GEML+  G+N++G E LYSG+ G E
Sbjct: 800  ALHGLCHDATPFIFS-----------EENSALEYFGEMLKAAGYNFYGTERLYSGISGLE 848

Query: 971  LTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLA 1030
            L  +IFIG VYYQRLRHMVSDKFQVR+TG  D++T QPI GR   GGIRFGEMERD+LLA
Sbjct: 849  LEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLA 908

Query: 1031 HGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP---KKV 1087
            HG ++LLHDRL  CSD  VA VC  CGS+L+     P           PP+ +    +K 
Sbjct: 909  HGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKP-----------PPSWSAMRNRKY 957

Query: 1088 TCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
             C  C  S  ++TV++PYVFRY  AELAAMNIK+ L +
Sbjct: 958  NCTLCSRSDTIDTVSVPYVFRYFVAELAAMNIKVKLDV 995


>gi|301622234|ref|XP_002940442.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like isoform 1
            [Xenopus (Silurana) tropicalis]
          Length = 1135

 Score =  873 bits (2256), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/1174 (41%), Positives = 689/1174 (58%), Gaps = 132/1174 (11%)

Query: 11   PLRELVRHHIESFDYMLDEGLS--------------------EMFD-------------- 36
            PL+++ R HI+SF+  + EGLS                    ++ D              
Sbjct: 34   PLQDITRAHIDSFNQAMTEGLSLAVQAMKPLEFTYKNDKVALQIVDAVITPPLVPKGSIC 93

Query: 37   --------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGA 88
                     CR  + +Y GKL ADV +        ++++    G  P+M+K++ C+L   
Sbjct: 94   KEQKIYPAECRGRRSTYRGKLTADVSWSLNGLQKGIIKQ--TLGHIPIMVKSKFCNLYDL 151

Query: 89   DSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVV 148
            + ++L+   EE  EMGGYFI+NG+E+V R +I+P++N+P++M+R  +++R  GYT   + 
Sbjct: 152  NPKQLLEHHEEEQEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKNRGPGYTQYGIS 211

Query: 149  IRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
            +RCVR + ++V + L+YL NGSV + F  Q + + +P+G  LKALVD +D +IF  L   
Sbjct: 212  LRCVRDEHTAVNMNLHYLENGSVMVNFIYQKELFFIPLGFALKALVDYSDYQIFTELI-- 269

Query: 209  YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQP---VIDGLQSE 265
                    KG   +    + +  +L  V +    ++   L+++GE F+    + D    E
Sbjct: 270  --------KGKEENSFYRDCMTQMLRAVVEEGCHSQKNVLKYLGERFRVKFYLPDWFTDE 321

Query: 266  SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPG 325
                 AE +I   I +HL  N +KF +L  M QKLF+      + +NPDSL  QE++ PG
Sbjct: 322  Q---AAEFLISQCICIHLKTNVEKFYMLCMMTQKLFTFAKDGCMEENPDSLMYQEVMTPG 378

Query: 326  HLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
             L+ ++LKEK+E WL      ++  ++    K+   +L+    +     +  +  + E +
Sbjct: 379  QLLLMFLKEKMESWLLG----VKVNLDKRAHKYTV-DLSTETMMKVFTSTSDLTKTCEYL 433

Query: 386  LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
            L TG L ++TGL + Q +G  V A++LNF+R++S FR VHRGA+FA +RTTSVR+LLPES
Sbjct: 434  LATGNLRSKTGLGMLQSSGLVVVADKLNFIRYLSHFRCVHRGAAFAKMRTTSVRRLLPES 493

Query: 446  WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP-- 503
            WGFLCPVHTPDGEPCGL+NHMT+ C + +           +   T +  +L  +GM P  
Sbjct: 494  WGFLCPVHTPDGEPCGLMNHMTAACEIVTQ----------TSYNTLLPLLLCSLGMTPVD 543

Query: 504  -SLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVP 562
             +  KL     P    V+LDG +VG +  +    +V+ LR  KV     +P   E+  +P
Sbjct: 544  GTAGKLFADCYP----VMLDGAMVGWVEKTIAPGLVSALRNYKVKHEKNVPPWTEIVLIP 599

Query: 563  LSLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGR 621
            ++   + YPGL+LFT+P + VRPVRN++L  EE     L+G  EQVF+ +   +G     
Sbjct: 600  MTGKASLYPGLFLFTTPCRMVRPVRNLALGKEE-----LLGTLEQVFLNVAVYEG----- 649

Query: 622  RNAFPA--THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRAD 679
             +  P   TH+E  P  MLSVVAN  P+SDHNQSPRNMYQCQM KQTMGF +   + R+D
Sbjct: 650  -DIVPGETTHQEFFPHSMLSVVANFIPFSDHNQSPRNMYQCQMGKQTMGFPLMTYQDRSD 708

Query: 680  QKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGM 739
             KLY LQTPQ+P+VR + Y  Y +D YP GTNAIVAV++YTGYDMEDAM+LNKSS +RG 
Sbjct: 709  NKLYRLQTPQSPLVRPSMYDYYEMDNYPIGTNAIVAVISYTGYDMEDAMVLNKSSWERGF 768

Query: 740  CHGQIYQTETIDLSDDGNKVDRGQK--LFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPY 797
             HG +Y+T+ +DLS    K+  G+   +F    D + +   +DSDGLP VG ++  G+PY
Sbjct: 769  AHGSVYKTDHVDLS---KKLKDGEDNLVFGIKPDDERVKGRLDSDGLPAVGAVLQFGDPY 825

Query: 798  CSIYDKTTNSWRTNSRKGSESVFVDYVAV---DMKNSKNLPQKANIRFRHTRNPIIGDKF 854
                +  T        K  E+  +D + +   D+   K   +   +  R  RNP IGDKF
Sbjct: 826  YGYLNLNTGESFVAYYKSKENCVIDNIKICSNDIGFGKF--KSVCVTMRIPRNPTIGDKF 883

Query: 855  SSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHG 914
            +SRHGQKG+ S+LWP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+A K  +LHG
Sbjct: 884  ASRHGQKGILSRLWPSEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHG 942

Query: 915  KFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCE 974
               DATPF  S           E  S ++  GEMLR  G+N++G E LYSG+ G EL  +
Sbjct: 943  LCHDATPFTFS-----------EENSALEYFGEMLRAGGYNFYGTEKLYSGISGLELEAD 991

Query: 975  IFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAA 1034
            IFIG VYYQRLRHMVSDKFQVR+TG  D++T QP+ GR   GGIRFGEMERD+LLAHG +
Sbjct: 992  IFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPVGGRNVQGGIRFGEMERDALLAHGTS 1051

Query: 1035 YLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP---KKVTCHA 1091
            +LLHDRL  CSD   A VC  CGS+L+     P           PP+ +    +K  C  
Sbjct: 1052 FLLHDRLFNCSDRSTAHVCIECGSLLSPFLEKP-----------PPSWSSIRNRKHHCEV 1100

Query: 1092 CQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
            C  +  +ETV++PYVFRY  AELAAMNI + L +
Sbjct: 1101 CDRTDTVETVSVPYVFRYFVAELAAMNISVKLSV 1134


>gi|346978143|gb|EGY21595.1| DNA-directed RNA polymerase I subunit RPA2 [Verticillium dahliae
            VdLs.17]
          Length = 1231

 Score =  873 bits (2256), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/1149 (42%), Positives = 681/1149 (59%), Gaps = 120/1149 (10%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR+  ++Y GKL A  EF+  D  +       + GQ P+M+K+ RCHL+G     LV  K
Sbjct: 118  CRERHVTYRGKLSATFEFRINDGDAKEFTR--DLGQMPIMVKSNRCHLEGNSPDLLVKRK 175

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EE+ E+GGYFI+NG+E++ R + + ++N+PM++ R SF +R  GY+   +++R VR D++
Sbjct: 176  EESEELGGYFIVNGIEKIIRLLQVNRRNFPMAIYRPSFANRGAGYSPHGIILRSVRPDET 235

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            S T  L+YL +G++   F  +  EYL+PV ++LKALV+TND EIF  L      K     
Sbjct: 236  SQTNVLHYLTDGNMTFRFSWRKNEYLVPVMMILKALVETNDREIFEGLIGSKGSK----- 290

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
             +  +  +++RV+++L       L T+ +   ++GE F+ V+    + S+Y V    ++ 
Sbjct: 291  -SAQNTFLTDRVELLLRTYTSYGLYTKTETRAYLGEKFRVVLGVPDTMSHYDVGTEFLKR 349

Query: 278  YIFVHLND-------NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITI 330
             + VHL +       ++DKF +L+FM++KL++LV      DNPD++QNQE+LL G L  +
Sbjct: 350  IVLVHLGNVDVTEQQDSDKFKMLLFMIRKLYALVAGECSVDNPDAIQNQEVLLGGFLYGM 409

Query: 331  YLKEKLEDWLRKGKKLIQDEIENNGKKF--DFFNLANIKK----VMEKNPSKQIGTSIET 384
             LKE+L+++L      ++  + +  +KF    F   + +K     + +  ++ +G+ +E 
Sbjct: 410  ILKERLDEFLSTA---VRASLRDYHRKFPAKTFTSQDFQKDFPATIFRLANESLGSGLEY 466

Query: 385  MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPE 444
             + TG L + +GLDLQQ AGYTV AE+LNFLRFIS FR +HRGA FA L+TT+VRKLLPE
Sbjct: 467  FMSTGNLTSPSGLDLQQTAGYTVVAEKLNFLRFISHFRMIHRGAFFAELKTTTVRKLLPE 526

Query: 445  SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIG-VGMIP 503
            SWGFLCPVHTPDG PCGLLNH+   CR+ +             + TS L  L+  +G + 
Sbjct: 527  SWGFLCPVHTPDGSPCGLLNHLAHKCRIMT-----------DPVDTSTLPALVAEMGAVS 575

Query: 504  SLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL 563
            +      +     + V+LDGRV+G     E  ++   LR  KV     +P +LE+GYVP 
Sbjct: 576  T----SSAATDESVVVMLDGRVLGFSTPQESIRIADTLRYWKVEGTHGVPLELEIGYVPP 631

Query: 564  SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRN 623
            S GG+YPGLY+ +   + VRPV+ + L     Q  + +GP EQ +M I   +        
Sbjct: 632  SNGGSYPGLYIASKAARMVRPVKYLPL-----QKQDYVGPHEQPYMSIAVVEN----EII 682

Query: 624  AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
            +  +TH E  PT MLS++AN+TP+SD NQSPRNMYQCQM KQTMG    AL  R D KLY
Sbjct: 683  SGESTHVEFDPTNMLSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPATALAHRTDNKLY 742

Query: 684  HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
             +QT QTP+VR+  + +YG D +P G N++VAV++YTGYDM+DAMILNKSS +RG  HG 
Sbjct: 743  RIQTGQTPVVRSPLHNEYGFDNFPNGMNSVVAVISYTGYDMDDAMILNKSSHERGFGHGT 802

Query: 744  IYQTETIDLSDDGNKVDRGQ--KLFRRNKDA---KSLHSVIDSDGLPYVGQMIHPGEPYC 798
            IY+ + + L DD       Q  KLF    ++       S++D DGLPYVG+M+  G+  C
Sbjct: 803  IYKVKKVSLKDDSRSRTAKQVTKLFGFAPNSFVKGEYRSMLDEDGLPYVGRMVQEGDILC 862

Query: 799  SIYDKTT--NSWRTN--------SRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRN 847
            + +  T   N   TN          K SE  F++ V +    + N P Q  +I+ R  R 
Sbjct: 863  AYHTVTADFNGNLTNLDGQTQYEKYKESEQAFIEEVRIIGSENGNEPAQTVSIKLRVPRA 922

Query: 848  PIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAA 907
            P+IGDKFSSRHGQKGV SQ WP  DMPF+  +GM+PD IINPHAFPSRMTI M +ES+A 
Sbjct: 923  PVIGDKFSSRHGQKGVASQKWPATDMPFT-ESGMQPDTIINPHAFPSRMTIGMFVESLAG 981

Query: 908  KGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVY 967
            K G+LHG   D+TPF             +E  +  D  G  L   G+NYHG E +YSG+ 
Sbjct: 982  KAGALHGLAQDSTPFK-----------FNEENTAADYFGHQLMKAGYNYHGNEPMYSGIT 1030

Query: 968  GTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDS 1027
            G EL+ +I+IG VYYQRLRHMV+DK+QVR+TG +   T QPIKGRK+GGGIR GEMERD+
Sbjct: 1031 GEELSADIYIGVVYYQRLRHMVNDKYQVRTTGPVVPTTGQPIKGRKKGGGIRVGEMERDA 1090

Query: 1028 LLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKK- 1086
            LLAHG A+LL DRL  CSDY  + +C  CGS L+   + P          + P    KK 
Sbjct: 1091 LLAHGTAFLLQDRLLNCSDYTKSWICRSCGSFLS---VQPT---------VSPFVGKKKQ 1138

Query: 1087 ---VTCHAC-------------------QTSKGME--------TVAMPYVFRYLAAELAA 1116
               V C +C                   +  +G +         V +P   +YL  ELAA
Sbjct: 1139 ISTVRCRSCAKRLDETDLEGDSIEGEIWEDGQGTQWVGGDNTTVVVVPGALKYLDVELAA 1198

Query: 1117 MNIKITLQL 1125
            M +K+  ++
Sbjct: 1199 MGVKLKYRV 1207


>gi|301622236|ref|XP_002940443.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like isoform 2
            [Xenopus (Silurana) tropicalis]
          Length = 1079

 Score =  873 bits (2255), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/1132 (42%), Positives = 679/1132 (59%), Gaps = 104/1132 (9%)

Query: 11   PLRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN 70
            PL+++ R HI+SF+  + EGLS                + ADV +        ++++   
Sbjct: 34   PLQDITRAHIDSFNQAMTEGLSL--------------AVQADVSWSLNGLQKGIIKQ--T 77

Query: 71   FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSM 130
             G  P+M+K++ C+L   + ++L+   EE  EMGGYFI+NG+E+V R +I+P++N+P++M
Sbjct: 78   LGHIPIMVKSKFCNLYDLNPKQLLEHHEEEQEMGGYFIINGIEKVIRMLIMPRRNFPIAM 137

Query: 131  VRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVL 190
            +R  +++R  GYT   + +RCVR + ++V + L+YL NGSV + F  Q + + +P+G  L
Sbjct: 138  IRPKWKNRGPGYTQYGISLRCVRDEHTAVNMNLHYLENGSVMVNFIYQKELFFIPLGFAL 197

Query: 191  KALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQH 250
            KALVD +D +IF  L           KG   +    + +  +L  V +    ++   L++
Sbjct: 198  KALVDYSDYQIFTELI----------KGKEENSFYRDCMTQMLRAVVEEGCHSQKNVLKY 247

Query: 251  IGEHFQP---VIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHT 307
            +GE F+    + D    E     AE +I   I +HL  N +KF +L  M QKLF+     
Sbjct: 248  LGERFRVKFYLPDWFTDEQ---AAEFLISQCICIHLKTNVEKFYMLCMMTQKLFTFAKDG 304

Query: 308  SVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIK 367
             + +NPDSL  QE++ PG L+ ++LKEK+E WL      ++  ++    K+   +L+   
Sbjct: 305  CMEENPDSLMYQEVMTPGQLLLMFLKEKMESWLLG----VKVNLDKRAHKYTV-DLSTET 359

Query: 368  KVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRG 427
             +     +  +  + E +L TG L ++TGL + Q +G  V A++LNF+R++S FR VHRG
Sbjct: 360  MMKVFTSTSDLTKTCEYLLATGNLRSKTGLGMLQSSGLVVVADKLNFIRYLSHFRCVHRG 419

Query: 428  ASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSK 487
            A+FA +RTTSVR+LLPESWGFLCPVHTPDGEPCGL+NHMT+ C + +           + 
Sbjct: 420  AAFAKMRTTSVRRLLPESWGFLCPVHTPDGEPCGLMNHMTAACEIVTQ----------TS 469

Query: 488  MRTSILRVLIGVGMIP---SLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRL 544
              T +  +L  +GM P   +  KL     P    V+LDG +VG +  +    +V+ LR  
Sbjct: 470  YNTLLPLLLCSLGMTPVDGTAGKLFADCYP----VMLDGAMVGWVEKTIAPGLVSALRNY 525

Query: 545  KVSAASVIPDDLEVGYVPLSLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGP 603
            KV     +P   E+  +P++   + YPGL+LFT+P + VRPVRN++L  EE     L+G 
Sbjct: 526  KVKHEKNVPPWTEIVLIPMTGKASLYPGLFLFTTPCRMVRPVRNLALGKEE-----LLGT 580

Query: 604  FEQVFMEIRCPDGGDGGRRNAFPA--THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQ 661
             EQVF+ +   +G      +  P   TH+E  P  MLSVVAN  P+SDHNQSPRNMYQCQ
Sbjct: 581  LEQVFLNVAVYEG------DIVPGETTHQEFFPHSMLSVVANFIPFSDHNQSPRNMYQCQ 634

Query: 662  MAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTG 721
            M KQTMGF +   + R+D KLY LQTPQ+P+VR + Y  Y +D YP GTNAIVAV++YTG
Sbjct: 635  MGKQTMGFPLMTYQDRSDNKLYRLQTPQSPLVRPSMYDYYEMDNYPIGTNAIVAVISYTG 694

Query: 722  YDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQK--LFRRNKDAKSLHSVI 779
            YDMEDAM+LNKSS +RG  HG +Y+T+ +DLS    K+  G+   +F    D + +   +
Sbjct: 695  YDMEDAMVLNKSSWERGFAHGSVYKTDHVDLS---KKLKDGEDNLVFGIKPDDERVKGRL 751

Query: 780  DSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAV---DMKNSKNLPQ 836
            DSDGLP VG ++  G+PY    +  T        K  E+  +D + +   D+   K   +
Sbjct: 752  DSDGLPAVGAVLQFGDPYYGYLNLNTGESFVAYYKSKENCVIDNIKICSNDIGFGKF--K 809

Query: 837  KANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRM 896
               +  R  RNP IGDKF+SRHGQKG+ S+LWP  DMPF+  +GM PD++ NPH FPSRM
Sbjct: 810  SVCVTMRIPRNPTIGDKFASRHGQKGILSRLWPSEDMPFTE-SGMVPDILFNPHGFPSRM 868

Query: 897  TIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNY 956
            TI ML+ES+A K  +LHG   DATPF  S           E  S ++  GEMLR  G+N+
Sbjct: 869  TIGMLIESMAGKSAALHGLCHDATPFTFS-----------EENSALEYFGEMLRAGGYNF 917

Query: 957  HGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGG 1016
            +G E LYSG+ G EL  +IFIG VYYQRLRHMVSDKFQVR+TG  D++T QP+ GR   G
Sbjct: 918  YGTEKLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPVGGRNVQG 977

Query: 1017 GIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIG 1076
            GIRFGEMERD+LLAHG ++LLHDRL  CSD   A VC  CGS+L+     P         
Sbjct: 978  GIRFGEMERDALLAHGTSFLLHDRLFNCSDRSTAHVCIECGSLLSPFLEKP--------- 1028

Query: 1077 GLPPARAP---KKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
              PP+ +    +K  C  C  +  +ETV++PYVFRY  AELAAMNI + L +
Sbjct: 1029 --PPSWSSIRNRKHHCEVCDRTDTVETVSVPYVFRYFVAELAAMNISVKLSV 1078


>gi|444320617|ref|XP_004180965.1| hypothetical protein TBLA_0E03910 [Tetrapisispora blattae CBS 6284]
 gi|387514008|emb|CCH61446.1| hypothetical protein TBLA_0E03910 [Tetrapisispora blattae CBS 6284]
          Length = 1204

 Score =  873 bits (2255), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 479/1108 (43%), Positives = 675/1108 (60%), Gaps = 96/1108 (8%)

Query: 58   LDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFR 117
            ++ G     E  + G  P+ML++ RCHL      +LV  KEE+ E GGYFI+NG+E++ R
Sbjct: 142  VNDGEETFSELKDCGGLPIMLQSNRCHLNNLSPYELVEKKEESDEFGGYFIVNGIEKLIR 201

Query: 118  SVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWL 177
             +I+ ++N+PM+++R SF +R   Y+   + +R VR DQ+S T  L+YL +G V   F  
Sbjct: 202  MLIVQRRNHPMAIIRPSFANRGASYSPYGIQLRSVRPDQTSQTNVLHYLNDGQVTFRFSW 261

Query: 178  QGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQ 237
            +  EYL+PV ++LKALVD +D EIF+ +              V +  +++R++++L   +
Sbjct: 262  RKNEYLVPVIMILKALVDISDREIFDGIV----------GDDVKNSFLTDRLELLLRGFK 311

Query: 238  DL--SLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLND-------NND 288
            +    L  R Q LQ++G+ F+ V      +S Y V + V+   + VHL +       N+D
Sbjct: 312  NRYPQLHNRTQVLQYLGDKFRVVFQSSPDKSDYEVGKEVLNRIVLVHLGNSSIENESNSD 371

Query: 289  KFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQ 348
            K  LL+FM++KL+SLV      DNPD+ Q+QE+LL G L  + +KEK++++L+     ++
Sbjct: 372  KVRLLLFMIRKLYSLVAGECCPDNPDATQHQEVLLGGFLYGMIIKEKIDEYLQNILAQVR 431

Query: 349  DEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQ 408
             +I N G   +F +   + +V+ +  +  IG+ ++  L TG L +Q+GLDLQQ +GYTV 
Sbjct: 432  ADI-NRGLAINFSDRKYMTRVLMR-VNDNIGSKLQYFLSTGNLVSQSGLDLQQVSGYTVV 489

Query: 409  AERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTS 468
            AE++NF RF++ FR VHRG+ FA L+TT+VRKLLPESWGFLCPVHTPDG PCGLLNH   
Sbjct: 490  AEKINFHRFLAHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHFAH 549

Query: 469  TCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV 528
             CR+++         D SK    I  +L  +G+ P+      +  P++  V LDG++VG 
Sbjct: 550  KCRISTTQS------DVSK----IPAILYSLGVSPA--SQTYAAGPSLCCVQLDGKIVGW 597

Query: 529  IPSSEIEKVVAHLRRLKVSAASV-IPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRN 587
            +   + + V   LR  KV   +  +P DLE+GYVP S  G YPGL+LF    + +RPVR 
Sbjct: 598  VSHEQGKIVADTLRFWKVEGKTDGLPLDLEIGYVPPSSKGQYPGLFLFAGHSRMMRPVRY 657

Query: 588  ISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPY 647
            + L  E+     ++GPFEQ +M I           +    TH E  PT +LS++ANLTP+
Sbjct: 658  LPLDKED-----IVGPFEQTYMNIAVTPQEIQNNIH----THVEFTPTNILSILANLTPF 708

Query: 648  SDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYP 707
            SD NQSPRNMYQCQM KQTMG    AL  R+D KLY LQ+ QTPIV+ N Y +YG+D +P
Sbjct: 709  SDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQSGQTPIVKANLYDEYGMDNFP 768

Query: 708  TGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVD--RGQKL 765
             GTNA+VAV++YTGYDM+DAMI+NKS+ +RG  +G +Y+ E +DLS + ++ D       
Sbjct: 769  NGTNAVVAVISYTGYDMDDAMIINKSADERGFGYGTMYKVEKVDLSLNRSRGDPITQHSG 828

Query: 766  FRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVA 825
            F  ++  K     +D DGLPY+G  +  G+P C+ +D+TTN  +  +   SE  +++ V 
Sbjct: 829  FGNDEWPKEWLEKLDEDGLPYIGTYVEEGDPICAYFDETTNRTKIKTYHSSEPGYIEEVN 888

Query: 826  V--DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRP 883
            +  D  N     Q   I+FR  R P IGDKFSSRHGQKGVCS+ WP IDMPFS  TG++P
Sbjct: 889  LIGDESNKSQEIQNITIKFRIRRTPQIGDKFSSRHGQKGVCSRKWPTIDMPFSE-TGIQP 947

Query: 884  DLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVD 943
            D+IINPHAFPSRMTI M +ES+A K G+LHG   DATP+             +E  +  D
Sbjct: 948  DIIINPHAFPSRMTIGMFVESLAGKAGALHGMAHDATPWI-----------FNEDDTPAD 996

Query: 944  ELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQ 1003
              GE L + G+NYHG E +YSGV G EL  +I+IG VYYQRLRHMV+DKFQVRSTG ++ 
Sbjct: 997  YFGEQLLSAGYNYHGNEPMYSGVTGEELRADIYIGVVYYQRLRHMVNDKFQVRSTGPVNS 1056

Query: 1004 ITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTAT 1063
            +T QP+KGRKR GGIR GEMERD+L+ HG ++LL DRL   SDY    VC  CGS+LT  
Sbjct: 1057 LTMQPVKGRKRHGGIRVGEMERDALIGHGTSFLLQDRLLNSSDYTQTAVCRDCGSILTT- 1115

Query: 1064 FIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGME------------------------ 1099
                 +R++  +G +   R  ++      Q  K +E                        
Sbjct: 1116 -----QRSVPRLGSVSSIRC-RRCAVSLDQAKKMLEKTSDESIFINESHIWEDGQGNKFV 1169

Query: 1100 ------TVAMPYVFRYLAAELAAMNIKI 1121
                  TVA+P+V +YL +EL AM IK+
Sbjct: 1170 GGSETTTVAIPFVLKYLDSELNAMGIKL 1197


>gi|367019086|ref|XP_003658828.1| hypothetical protein MYCTH_2295109 [Myceliophthora thermophila ATCC
            42464]
 gi|347006095|gb|AEO53583.1| hypothetical protein MYCTH_2295109 [Myceliophthora thermophila ATCC
            42464]
          Length = 1234

 Score =  873 bits (2255), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/1143 (42%), Positives = 687/1143 (60%), Gaps = 105/1143 (9%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSP--VVRERFNFGQFPVMLKTRRCHLQGADSQKLV 94
             CR+  +SY GKL A  E++  D G P   VRE    GQ P+M+K+ +CHL+      LV
Sbjct: 117  ECRERHVSYRGKLTAVFEYRIND-GEPQEFVRE---LGQMPIMVKSNKCHLENNPPALLV 172

Query: 95   SLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRK 154
              KEE+ E+GGYFI+NG+E++ R +++ ++N+P++++R SF +R   YT   +++R VR 
Sbjct: 173  QRKEESEELGGYFIINGIEKIIRLLLVNRRNFPLAIIRPSFANRGSSYTQYGIIVRSVRP 232

Query: 155  DQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYK 214
            D++S T  L+YL +G+V   F  +  EYL+PV ++LKAL++TND EIF  L    + K  
Sbjct: 233  DETSQTNVLHYLNDGNVTFRFSWRKNEYLVPVMMILKALIETNDREIFEGLVGPPNSK-- 290

Query: 215  KEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETV 274
                 + +  +++RV+++L   +   L T+ Q   ++G+ F+ V+    + S Y V    
Sbjct: 291  ----GIENTFLTDRVELLLRTYKSYGLYTKTQTRAYLGQKFRVVLGVPDTMSDYEVGTEF 346

Query: 275  IRDYIFVHL-------NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
            +R  + VHL         + DKF +L+FM +KL++LV      DNPD++QNQEILL G L
Sbjct: 347  LRKVVLVHLGCVDVTEEQDLDKFKMLLFMCRKLYALVAGDCAVDNPDAVQNQEILLGGFL 406

Query: 328  ITIYLKEKLEDWLRKG-KKLIQDEIENNGKKFDFFNLANIKKV---MEKNPSKQIGTSIE 383
              + LKE+L++ L    K  ++D +  N     F + +  K     + +  ++ +G ++E
Sbjct: 407  YGMILKERLDELLSVSLKAALRDYLRRN-PTLSFTSSSFAKDFPISIFRRTNENLGNALE 465

Query: 384  TMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLP 443
              L TG L + +GLDLQQ +G+TV AE+LNFLRFIS FR VHRG+ FA L+TT+VRKLLP
Sbjct: 466  YFLSTGNLQSPSGLDLQQTSGFTVVAEKLNFLRFISHFRMVHRGSFFAQLKTTTVRKLLP 525

Query: 444  ESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSI-LRVLIGVGMI 502
            ESWGFLCPVHTPDG PCGLLNH+   C++               M  S+ +  + GV M 
Sbjct: 526  ESWGFLCPVHTPDGAPCGLLNHLAHKCKI---------------MTESVDVSAVPGVAME 570

Query: 503  PSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVP 562
              +     +     + V+LDGR++G       + V   LRR KV     IP  LE+GYVP
Sbjct: 571  LGVNDYSSAATSESVVVMLDGRIIGWCTPKAAKAVADTLRRWKVEGGHGIPVLLEIGYVP 630

Query: 563  LSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRR 622
             S GG+YPG+Y+ + P + VRPV+ + L  E+      +GP EQ +M I C +       
Sbjct: 631  PSRGGSYPGIYMASQPSRMVRPVKYLPLGKED-----FVGPHEQPYMSIACTE------E 679

Query: 623  NAFP--ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQ 680
               P  +TH E  PT +LS++AN+TP+SD NQSPRNMYQCQM KQ+MG    A+++R D 
Sbjct: 680  EVIPGDSTHVEFDPTNILSILANMTPFSDFNQSPRNMYQCQMGKQSMGTPGAAIRYRTDN 739

Query: 681  KLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMC 740
            K+Y LQT QTPIVR   +  YG D +P G NA+VAV++YTGYDM+DAMILNKS+ +RG  
Sbjct: 740  KMYRLQTGQTPIVRAPLHNTYGFDNFPNGMNAVVAVISYTGYDMDDAMILNKSAHERGFG 799

Query: 741  HGQIYQTETIDLSDDGNKVDRGQKLFRR-------NKDAKSLHSVIDSDGLPYVGQMIHP 793
            HG IY+T+ I L DD     R  K   R       +    S   ++D DGLPYVG+++  
Sbjct: 800  HGTIYKTKKISLKDDTRT--RTSKTITRMFGFAPGSPVRASDREMLDEDGLPYVGRLVRE 857

Query: 794  GEPYCSIYDKTTN-SWRTNSRKG---------SESVFVDYVAVDMKNSKNLP-QKANIRF 842
            G+  C+ +  + + S +  +R G         +E  F++ V V   +S N P Q  +I+ 
Sbjct: 858  GDILCAWHTVSADYSGQLINRDGITHWERYKEAEDAFIEEVRVIGSDSGNEPLQTISIKL 917

Query: 843  RHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLL 902
            R  R+P+IGDKFSSRHGQKGV SQ WP IDMPFS  +G++PD+IINPHAFPSRMTI M +
Sbjct: 918  RIPRSPVIGDKFSSRHGQKGVASQKWPAIDMPFSE-SGIQPDVIINPHAFPSRMTIGMFV 976

Query: 903  ESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVL 962
            ES+A K G+LHG   D+TPF             +E  +  D  G+ L   G+NYHG E +
Sbjct: 977  ESLAGKAGALHGLAQDSTPFK-----------FNEEHTAADYFGQQLIKAGYNYHGNEPM 1025

Query: 963  YSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGE 1022
            YSG+ G E  C+I+IG VYYQRLRHMV+DK+QVR+TG +   T QPIKGRK+GGGIR GE
Sbjct: 1026 YSGITGEEFACDIYIGVVYYQRLRHMVNDKYQVRTTGPVVPTTGQPIKGRKKGGGIRVGE 1085

Query: 1023 MERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLT-----ATFIHPQKRA------ 1071
            MERD+LLAHG A+LL DRL  CSDY  A +C  CGS L+     + FI  +++       
Sbjct: 1086 MERDALLAHGTAFLLQDRLLNCSDYTKAWICRDCGSFLSVQPTVSPFIGKRRQVGTVRCR 1145

Query: 1072 -----IREIGGLPPARAPKKV--TCHACQTSKGMET--VAMPYVFRYLAAELAAMNIKIT 1122
                 + +I GL   +   ++       Q   G  T  V +P   ++L  ELAA+ +K+ 
Sbjct: 1146 NCAQRLDQIEGLDLMKLDGEIWEDGQGVQWIGGENTTMVVVPGALKFLDVELAALGVKMK 1205

Query: 1123 LQL 1125
             ++
Sbjct: 1206 FRV 1208


>gi|240278168|gb|EER41675.1| DNA-directed RNA polymerase I [Ajellomyces capsulatus H143]
          Length = 1242

 Score =  873 bits (2255), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/1167 (42%), Positives = 684/1167 (58%), Gaps = 126/1167 (10%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDA-GSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
             CR+   +Y G+L A +E++  +      VRE    GQ P+ML++ RCHL+    ++LV 
Sbjct: 126  ECRERHATYRGRLRARLEYRVNNGEWKESVRE---LGQVPIMLRSNRCHLEKCSPEQLVQ 182

Query: 96   LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
             KEE+ E+GGYFI+NG E++ R +I+ ++N+PM+++RSSF  R + YT   + IR VR D
Sbjct: 183  RKEESEELGGYFIVNGNEKLIRMLIVGRRNFPMAIIRSSFTKRGQTYTKYGIQIRSVRTD 242

Query: 156  QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
            Q+S T  L+YL +G+V   F  +  EYL+PV ++LKALV+TND EIF  L        ++
Sbjct: 243  QTSQTNVLHYLSDGNVTFRFSWRKNEYLVPVVMILKALVETNDREIFERLVG------RE 296

Query: 216  EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
                + +  V++RV+++L   +   L  R     ++GE F+PV+          V    +
Sbjct: 297  GSEGIKNSFVTDRVELLLRTYKGYKLYGRDDTRAYLGEKFRPVLGMPADIPDDMVGAEFL 356

Query: 276  RDYIFVHLND-------NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
            R  +  HL +       +NDKFN+++FM++KL++LV      DNPD++ NQE+LL G L 
Sbjct: 357  RKVVLPHLGNQNVTESQDNDKFNMILFMIRKLYTLVAGECAPDNPDAVSNQEVLLGGSLY 416

Query: 329  TIYLKEKLEDWLRKGKKLIQD-EIENNGKKFD--FFNLANIKKVMEKNPSKQIGTSIETM 385
             + LKE+LE+WLR    + +D    N   +F    F    + +++ +  ++ IG ++E  
Sbjct: 417  GMLLKERLEEWLRAFGPIARDWSFRNQNARFSDPRFEKEFLSRIVSRT-NENIGGALEYF 475

Query: 386  LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
            L TG L + TGLDLQQ +GYTV AE++NF RFIS FR +HRG+ FA L+TT+VRKLLPES
Sbjct: 476  LSTGNLVSPTGLDLQQPSGYTVIAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPES 535

Query: 446  WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
            WGFLCPVHTPDG PCGLLNH+   C++A+      N+ D S +   I  + +      SL
Sbjct: 536  WGFLCPVHTPDGSPCGLLNHLAHECKIAT-----SNL-DVSGVPQVISDLGVTYESSVSL 589

Query: 506  PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
             + V         V LDGR++G     +   +   LR  KV+    +P +LE+GY+P S 
Sbjct: 590  DESV--------VVQLDGRILGYCSPKQARMISDTLRYWKVAGNKSLPVELEIGYIPNSN 641

Query: 566  GGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNA 624
             G YPG+Y+F+   + +RPV+ + L       ++ +GPFEQ FMEI C P     G    
Sbjct: 642  RGQYPGIYIFSQCARMMRPVKYLPL-----DKLDYVGPFEQPFMEIACVPSDIMSG---- 692

Query: 625  FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
              +TH E  PT +LS+VAN+TP+SD NQSPRNMYQCQM+KQ MG    ++++R D KLY 
Sbjct: 693  -ISTHVEFDPTHILSIVANMTPFSDFNQSPRNMYQCQMSKQAMGTPGASIEYRTDNKLYR 751

Query: 685  LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI 744
            LQT QTP+VRT  Y  YG+D +P G NA+VAVL+YTGYDM+DAMI+NKS+ DRG   G I
Sbjct: 752  LQTGQTPVVRTPLYNSYGLDNFPNGMNAVVAVLSYTGYDMDDAMIINKSAHDRGFGWGTI 811

Query: 745  YQTETIDLSDDGNKVDRGQKLFRRNKD-----------AKSLHSVIDSDGLPYVGQMIHP 793
            Y+T+   L D   K  RG+   RR                     +D DGLP++G  +  
Sbjct: 812  YKTKIYSLDD---KESRGRGKARREVSKLFGFAPGSLIKGEWRHALDEDGLPHIGARVTE 868

Query: 794  GEPYCSI----YDKTTNSWRTN--------SRKGSESVFVDYVAVDMKNSKNLP-QKANI 840
            G    +     +D  +NS+ TN          K +E  ++D V +    +   P Q  ++
Sbjct: 869  GSIVAAWHTVRFDPVSNSY-TNIDGQTHLLKYKDTEEGYIDNVRIFGSETGGDPCQAISV 927

Query: 841  RFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAM 900
            +FR  R P+IGDKFSSRHGQKGVCSQLWP IDMPFS  TG++PD+IINPHAFPSRMTI M
Sbjct: 928  KFRVPRKPVIGDKFSSRHGQKGVCSQLWPAIDMPFS-ETGIQPDIIINPHAFPSRMTIGM 986

Query: 901  LLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVE 960
             +ES+A K G+LHG   D+TPF  S           E  +  D  GE LR  G+N+HG E
Sbjct: 987  FIESLAGKAGALHGLAQDSTPFRFS-----------EEHTASDFFGEQLRKAGYNFHGNE 1035

Query: 961  VLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRF 1020
             +YSG+ G E   +I++G VYYQRLRHMV+DKFQVR+TG ++ +T QP+KGR +GGGIR 
Sbjct: 1036 PMYSGITGREFAADIYLGVVYYQRLRHMVNDKFQVRTTGPVNALTGQPVKGRAKGGGIRV 1095

Query: 1021 GEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLT-----ATFIHPQKR----- 1070
            GEMERDSLLAHGAA+LL DRL  CSD   + +C  CGS L+     + F+ P K      
Sbjct: 1096 GEMERDSLLAHGAAFLLQDRLMNCSDTTRSWICRTCGSFLSTQVAVSKFMAPSKNLAMAA 1155

Query: 1071 ------AIREIGGLPPA--RAPKKVTCHACQTSKGME----------------------T 1100
                   +   GG   A       V C  C      +                       
Sbjct: 1156 VAKSSSGLGRPGGAMGALDGGAGVVRCRRCAKEAVFDDPRAEVWEDGEGRRFVGGDDTTV 1215

Query: 1101 VAMPYVFRYLAAELAAMNIKITLQLGD 1127
            VA+P V +YL  ELA M +K+T ++ +
Sbjct: 1216 VAVPGVLKYLDVELATMGVKMTFKVNN 1242


>gi|342873602|gb|EGU75766.1| hypothetical protein FOXB_13785 [Fusarium oxysporum Fo5176]
          Length = 1232

 Score =  872 bits (2254), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/1152 (42%), Positives = 685/1152 (59%), Gaps = 118/1152 (10%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR+  ++Y G+L A +E++ ++ G PV   R  FGQ PVM+K+ RCHL+      LV  K
Sbjct: 118  CRERHVTYRGRLSATLEYR-INGGDPVEFTR-EFGQVPVMIKSNRCHLENNSPALLVERK 175

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EE+ E+GGYFI+NG+E++ R + L K+N+PM++ R SF++R  GYT   +++R VR D++
Sbjct: 176  EESEELGGYFIVNGIEKIIRMLQLNKRNFPMAINRPSFQNRGPGYTPYGIILRAVRPDET 235

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            S T  L+YL +G++   F  +  EYL+PV ++LKALV+TND EIF  L      K     
Sbjct: 236  SQTNVLHYLSDGNMTFRFSWRKNEYLVPVMMILKALVETNDREIFEGLVGPAGSK----- 290

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
             +  +  ++ R++++L   +  +L ++     ++GE F+ V+    + +   V    +R 
Sbjct: 291  -STENTFLTHRIELLLRTYKSYNLYSKSDTRAYLGEKFRVVLGVPDTMTNLEVGTEFLRR 349

Query: 278  YIFVHLND-------NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITI 330
             + VHL +       + +KF LL+FM++KL++LV      DNPD++QNQEILL G L   
Sbjct: 350  IVLVHLGNVDVTEEQDKEKFKLLLFMIRKLYALVAGDCAVDNPDAVQNQEILLGGFLYGQ 409

Query: 331  YLKEKLEDWLRKG-KKLIQDEIENNGKKFDFFNLANIKKVMEKN----PSKQIGTSIETM 385
             LKE+L+++L    +  ++D +  N      F   + +K    N     ++ +G ++E  
Sbjct: 410  ILKERLDEFLSVNVRASLRDYLRRNPGVA--FTSEDFRKEFPNNIFRKANENLGNALEYF 467

Query: 386  LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
            L TG L + +GLDLQQ AG+TV AE+LNFLRFIS FR VHRGA FA L+TT+VRKLLPES
Sbjct: 468  LSTGNLQSASGLDLQQTAGFTVVAEKLNFLRFISHFRMVHRGAFFAQLKTTAVRKLLPES 527

Query: 446  WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
            WGF+CPVHTPDG PCGLLNH+   C++ + Y    +I   ++           +G++   
Sbjct: 528  WGFMCPVHTPDGAPCGLLNHLAHKCKIMTDYVDVSHIASLAQE----------LGIV--- 574

Query: 506  PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
              +  +     + V+LDG+++G     E  ++    R  KV     +P  LE+GYVP S 
Sbjct: 575  -DVSSASTEENVVVMLDGKILGFCTPKESVRIADCFRYWKVEGTHGVPLQLEIGYVPPSR 633

Query: 566  GGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNA 624
            GG+YPG+Y+ ++P + VRPV+ + L  E+      +GP+EQ +M I   P   + G+   
Sbjct: 634  GGSYPGIYMTSTPARMVRPVKYLPLQKED-----WVGPYEQPYMSIAVVPQEVESGK--- 685

Query: 625  FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
              +TH E  PT MLS++AN+TP+SD NQSPRNMYQCQM KQTMG    A+++R D K Y 
Sbjct: 686  --STHVEFDPTNMLSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPGAAIRYRTDNKSYR 743

Query: 685  LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI 744
            +QT QTPIVR   +  YG D +P G NA+VAV++YTGYDM+DAMILNKS+ +RG  HG I
Sbjct: 744  IQTGQTPIVRAPLHNTYGFDNFPNGMNAVVAVISYTGYDMDDAMILNKSAHERGFGHGTI 803

Query: 745  YQTETIDLSDDG-----NKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCS 799
            Y+T+ I L DD        V +       +  +     ++D DGLP+VG++I  G+  C+
Sbjct: 804  YKTKKISLKDDSRTKATKSVTKAFGFAPHSYVSAQYQGMLDDDGLPHVGRLIQEGDVICA 863

Query: 800  IYDKTT--NSWRTN--------SRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNP 848
             +  T   N    N          K SE+ FV+ V +   +S N P Q  +++FR  R+P
Sbjct: 864  WHTVTPDYNGKLVNLDGITHYEKYKDSENGFVEEVRLIGADSGNEPLQTISVKFRIPRSP 923

Query: 849  IIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
            IIGDKFSSRHGQKGV SQ WP +D+PFS  TG+ PD+IINPHAFPSRMTI M +ES+A K
Sbjct: 924  IIGDKFSSRHGQKGVASQKWPTMDLPFS-ETGISPDIIINPHAFPSRMTIGMFVESLAGK 982

Query: 909  GGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYG 968
             G+LHG   D+TPF             DE  +  D  G  L   G+NYHG E +YSG+ G
Sbjct: 983  AGALHGLAQDSTPFK-----------FDEENTAGDYFGHQLMKAGYNYHGNEPMYSGITG 1031

Query: 969  TELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSL 1028
             EL  +I+IG VYYQRLRHMV+DK+QVR+TG +   T QPIKGRKRGGGIR GEMERD+L
Sbjct: 1032 EELAADIYIGVVYYQRLRHMVNDKYQVRTTGPVVPTTGQPIKGRKRGGGIRVGEMERDAL 1091

Query: 1029 LAHGAAYLLHDRLHTCSDYHVADVCSLCGSVL----TATFIHPQKRAIREIGGLPPARAP 1084
            LAHG A+LL DRL  CSDY  + +C  CGS L    T +   P K+           +A 
Sbjct: 1092 LAHGTAFLLQDRLLNCSDYSKSWICRRCGSFLSVQPTVSQFAPGKK-----------KAA 1140

Query: 1085 KKVTCHACQT----SKGME------------------------TVAMPYVFRYLAAELAA 1116
              V C AC      ++G++                         V +P   ++L  ELAA
Sbjct: 1141 SIVRCRACAVKLDDAEGIDLTEIQGEIWEDGHGNSWVGGDHTTQVVVPGALKFLDVELAA 1200

Query: 1117 MNIKITLQLGDG 1128
            M +K+  ++  G
Sbjct: 1201 MGVKLKYRVDRG 1212


>gi|367003930|ref|XP_003686698.1| hypothetical protein TPHA_0H00540 [Tetrapisispora phaffii CBS 4417]
 gi|357525000|emb|CCE64264.1| hypothetical protein TPHA_0H00540 [Tetrapisispora phaffii CBS 4417]
          Length = 1203

 Score =  872 bits (2253), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/1122 (43%), Positives = 677/1122 (60%), Gaps = 87/1122 (7%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
              RQ   SY GKL+  +++   D G     +  + G  PVML++ RCHL      +LV  
Sbjct: 125  EARQRLTSYKGKLLVKLKWSVND-GDDTFTDMRDCGGLPVMLQSNRCHLNNLSPYELVKQ 183

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
            KEE+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R   Y+   V +R VR DQ
Sbjct: 184  KEESDELGGYFIINGIEKLIRMLIVQRRNHPMAIIRPSFSNRGASYSQYGVQLRSVRPDQ 243

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
            +S T  L+YL +G V   F  +  EYL+P  ++LKAL+DT+D EIF+             
Sbjct: 244  TSQTNVLHYLNDGQVTFRFSWRKNEYLIPAVMILKALIDTSDREIFD------------- 290

Query: 217  KGAVGSPL----VSERVKIILAEVQDLS--LTTRLQCLQHIGEHFQPVIDGLQSESYYAV 270
             G +GS +    +++R++++L   +     L  R Q LQ+IG+ F+ V      +S   V
Sbjct: 291  -GIIGSDIKNSFLTDRLELLLRGFKKRFPLLQNRTQVLQYIGDKFRVVFQASPDKSDLEV 349

Query: 271  AETVIRDYIFVHLN--DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
             + VI   + VHL   +N DK  +L+FM++KL+SLV      DNPD+ Q+QE+LL G L 
Sbjct: 350  GQEVIDRIVLVHLGKGNNEDKSRMLLFMIRKLYSLVAGECCPDNPDATQHQEVLLGGFLY 409

Query: 329  TIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKT 388
             + +KEK++++L+     I+ +I N G   +F +   + +V+ +  ++ IG+ ++  L T
Sbjct: 410  GMIIKEKIDEYLQNIVAQIRTDI-NRGIAINFKDRKYMSRVLMR-VNENIGSKLQYFLST 467

Query: 389  GRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGF 448
            G L +Q+GLDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGF
Sbjct: 468  GNLVSQSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGF 527

Query: 449  LCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKL 508
            LCPVHTPDG PCGLLNH    C++++         D SK    I  +L  +G+ P+    
Sbjct: 528  LCPVHTPDGSPCGLLNHFAHKCQISTVQS------DVSK----IPSLLYSLGVTPASQAF 577

Query: 509  VKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV-IPDDLEVGYVPLSLGG 567
                 P++  V +DG++VG     + + +   LR  KV   +  +P DLE+GYVP S  G
Sbjct: 578  AAG--PSLCCVQIDGKIVGWTTHEQGKIIADTLRLWKVEGKTAGLPLDLEIGYVPPSTRG 635

Query: 568  AYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPA 627
             YPGLY+F    + +RPVR + L  E+     ++GPFEQV+M I         + N    
Sbjct: 636  QYPGLYIFGGHSRMMRPVRYLPLDKED-----IVGPFEQVYMNIAVTP--QEIQNNVH-- 686

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            +H E  PT +LS++ANLTP+SD NQSPRNMYQCQM KQTMG    AL  R+D KLY LQ+
Sbjct: 687  SHVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALVHRSDNKLYRLQS 746

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
             QTPIV+ N Y  YG+D +P G NA+VAV++YTGYDM+DAMI+NKS+ +RG  +G +Y+ 
Sbjct: 747  GQTPIVKANLYDDYGMDNFPNGMNAVVAVISYTGYDMDDAMIINKSADERGFGYGTMYKV 806

Query: 748  ETIDLSDDGNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTT 805
            E  DLS + ++ D   + F    D   K     +D DGLP +G  +  G+P C+ +D T 
Sbjct: 807  EKHDLSMNRSRGDPITQHFGFGPDEWPKEWLEKLDDDGLPMIGTYVEEGDPVCAYFDDTL 866

Query: 806  NSWRTNSRKGSESVFVDYVAV--DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGV 863
            N  +  +   SE  +++ V +  D  N     Q  +I++R  R P IGDKFSSRHGQKGV
Sbjct: 867  NKTKIKTYHSSEPAYIEEVNLIGDESNKFQELQTVSIKYRIRRTPQIGDKFSSRHGQKGV 926

Query: 864  CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFA 923
            CS+ WP IDMPFS  TG++PD+IINPHAFPSRMTI M +ES+A K G+LHG   DATP+ 
Sbjct: 927  CSRKWPTIDMPFSE-TGIQPDIIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDATPWM 985

Query: 924  NSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQ 983
             S           E  +  D  G+ L   G+NYHG E +YSG  G EL C+I++G VYYQ
Sbjct: 986  FS-----------EDDTPADYFGDQLLKAGYNYHGNEPMYSGATGEELRCDIYVGVVYYQ 1034

Query: 984  RLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHT 1043
            RLRHMV+DKFQVRSTG ++ +T QP+KGRKR GGIR GEMERD+L+ HG +YLL DRL  
Sbjct: 1035 RLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIGHGTSYLLQDRLLN 1094

Query: 1044 CSDYHVADVCSLCGSVLT-------------------ATFIHPQKRAIREIGGLPPARAP 1084
             SDY    VC  CGS+LT                   A      K+ I +  G       
Sbjct: 1095 SSDYTQTSVCRECGSILTTQQSVPRIGTQSTVRCRRCAVTFDAAKKMISKYEGDEDIFID 1154

Query: 1085 KKVTCHACQTSK---GME--TVAMPYVFRYLAAELAAMNIKI 1121
                    Q +K   G E  TVA+P+V +YL +EL AM I++
Sbjct: 1155 DSEIWEDGQGNKFVGGGETTTVAIPFVLKYLDSELNAMGIRL 1196


>gi|325096233|gb|EGC49543.1| DNA-directed RNA polymerase I [Ajellomyces capsulatus H88]
          Length = 1242

 Score =  872 bits (2253), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/1167 (42%), Positives = 684/1167 (58%), Gaps = 126/1167 (10%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDA-GSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
             CR+   +Y G+L A +E++  +      VRE    GQ P+ML++ RCHL+    ++LV 
Sbjct: 126  ECRERHATYRGRLRARLEYRVNNGEWKESVRE---LGQVPIMLRSNRCHLEKCSPEQLVQ 182

Query: 96   LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
             KEE+ E+GGYFI+NG E++ R +I+ ++N+PM+++RSSF  R + YT   + IR VR D
Sbjct: 183  RKEESEELGGYFIVNGNEKLIRMLIVGRRNFPMAIIRSSFTKRGQTYTKYGIQIRSVRTD 242

Query: 156  QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
            Q+S T  L+YL +G+V   F  +  EYL+PV ++LKALV+TND EIF  L        ++
Sbjct: 243  QTSQTNVLHYLSDGNVTFRFSWRKNEYLVPVVMILKALVETNDREIFERLVG------RE 296

Query: 216  EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
                + +  V++RV+++L   +   L  R     ++GE F+PV+          V    +
Sbjct: 297  GSEGIKNSFVTDRVELLLRTYKGYKLYGRDDTRAYLGEKFRPVLGMPADIPDDMVGAEFL 356

Query: 276  RDYIFVHLND-------NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
            R  +  HL +       +NDKFN+++FM++KL++LV      DNPD++ NQE+LL G L 
Sbjct: 357  RKVVLPHLGNQNVTESQDNDKFNMILFMIRKLYTLVAGECAPDNPDAVSNQEVLLGGSLY 416

Query: 329  TIYLKEKLEDWLRKGKKLIQD-EIENNGKKFD--FFNLANIKKVMEKNPSKQIGTSIETM 385
             + LKE+LE+WLR    + +D    N   +F    F    + +++ +  ++ IG ++E  
Sbjct: 417  GMLLKERLEEWLRAFGPIARDWSFRNQNARFSDPRFEKEFLSRIVSRT-NENIGGALEYF 475

Query: 386  LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
            L TG L + TGLDLQQ +GYT+ AE++NF RFIS FR +HRG+ FA L+TT+VRKLLPES
Sbjct: 476  LSTGNLVSPTGLDLQQPSGYTIIAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPES 535

Query: 446  WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
            WGFLCPVHTPDG PCGLLNH+   C++A+      N+ D S +   I  + +      SL
Sbjct: 536  WGFLCPVHTPDGSPCGLLNHLAHECKIAT-----SNL-DVSGVPQVISDLGVTYESSVSL 589

Query: 506  PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
             + V         V LDGR++G     +   +   LR  KV+    +P +LE+GY+P S 
Sbjct: 590  DESV--------VVQLDGRILGYCSPKQARMISDTLRYWKVAGNKSLPVELEIGYIPNSN 641

Query: 566  GGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNA 624
             G YPG+Y+F+   + +RPV+ + L       ++ +GPFEQ FMEI C P     G    
Sbjct: 642  RGQYPGIYIFSQCARMMRPVKYLPL-----DKLDYVGPFEQPFMEIACVPSDIMSG---- 692

Query: 625  FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
              +TH E  PT +LS+VAN+TP+SD NQSPRNMYQCQM+KQ MG    ++++R D KLY 
Sbjct: 693  -ISTHVEFDPTHILSIVANMTPFSDFNQSPRNMYQCQMSKQAMGTPGASIEYRTDNKLYR 751

Query: 685  LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI 744
            LQT QTP+VRT  Y  YG+D +P G NA+VAVL+YTGYDM+DAMI+NKS+ DRG   G I
Sbjct: 752  LQTGQTPVVRTPLYNSYGLDNFPNGMNAVVAVLSYTGYDMDDAMIINKSAHDRGFGWGTI 811

Query: 745  YQTETIDLSDDGNKVDRGQKLFRRNKD-----------AKSLHSVIDSDGLPYVGQMIHP 793
            Y+T+   L D   K  RG+   RR                     +D DGLP++G  +  
Sbjct: 812  YKTKIYSLDD---KESRGRGKARREVSKLFGFAPGSLIKGEWRHALDEDGLPHIGARVTE 868

Query: 794  GEPYCSI----YDKTTNSWRTN--------SRKGSESVFVDYVAVDMKNSKNLP-QKANI 840
            G    +     +D  +NS+ TN          K +E  ++D V +    +   P Q  ++
Sbjct: 869  GSIVAAWHTVRFDPVSNSY-TNIDGQTHLLKYKDTEEGYIDNVRIFGSETGGDPCQAISV 927

Query: 841  RFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAM 900
            +FR  R P+IGDKFSSRHGQKGVCSQLWP IDMPFS  TG++PD+IINPHAFPSRMTI M
Sbjct: 928  KFRVPRKPVIGDKFSSRHGQKGVCSQLWPAIDMPFS-ETGIQPDIIINPHAFPSRMTIGM 986

Query: 901  LLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVE 960
             +ES+A K G+LHG   D+TPF  S           E  +  D  GE LR  G+N+HG E
Sbjct: 987  FIESLAGKAGALHGLAQDSTPFRFS-----------EEHTASDFFGEQLRKAGYNFHGNE 1035

Query: 961  VLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRF 1020
             +YSG+ G E   +I++G VYYQRLRHMV+DKFQVR+TG ++ +T QP+KGR +GGGIR 
Sbjct: 1036 PMYSGITGREFAADIYLGVVYYQRLRHMVNDKFQVRTTGPVNALTGQPVKGRAKGGGIRV 1095

Query: 1021 GEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLT-----ATFIHPQKR----- 1070
            GEMERDSLLAHGAA+LL DRL  CSD   + +C  CGS L+     + F+ P K      
Sbjct: 1096 GEMERDSLLAHGAAFLLQDRLMNCSDTTRSWICRTCGSFLSTQVAVSKFMAPSKNLAMAA 1155

Query: 1071 ------AIREIGGLPPA--RAPKKVTCHACQTSKGME----------------------T 1100
                   +   GG   A       V C  C      +                       
Sbjct: 1156 VAKSSSGLGRPGGAMGALDGGAGVVRCRRCAKEAVFDDPRAEVWEDGEGRRFVGGDDTTV 1215

Query: 1101 VAMPYVFRYLAAELAAMNIKITLQLGD 1127
            VA+P V +YL  ELA M +K+T ++ +
Sbjct: 1216 VAVPGVLKYLDVELATMGVKMTFKVNN 1242


>gi|363749505|ref|XP_003644970.1| hypothetical protein Ecym_2421 [Eremothecium cymbalariae DBVPG#7215]
 gi|356888603|gb|AET38153.1| Hypothetical protein Ecym_2421 [Eremothecium cymbalariae DBVPG#7215]
          Length = 1195

 Score =  872 bits (2252), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/1122 (43%), Positives = 683/1122 (60%), Gaps = 91/1122 (8%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CRQ   SY GKL+  + +  ++ G     E  + G  P+ML++ RCHL      +LV  K
Sbjct: 120  CRQRLASYKGKLLLKLNW-VVNDGEETYTEVRDCGSLPIMLQSNRCHLDKLSPYELVEHK 178

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EE+ EMGGYFI+NG+E++ R +I+ ++N+PM+++R SF +R   Y+   V IR VR DQ+
Sbjct: 179  EESDEMGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFANRGASYSPYGVQIRSVRPDQT 238

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            S T  L+YL +G V   F  +  EYL+PV ++LKAL D +D EIF+ +            
Sbjct: 239  SQTNVLHYLNDGQVTFRFSWRKNEYLVPVVMILKALNDMSDREIFDGIV----------- 287

Query: 218  GA-VGSPLVSERVKIILAEVQDL--SLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETV 274
            GA   +  +++R++++L   +     L    Q LQ++G+ F+ V       + Y V +  
Sbjct: 288  GADTSNSFLTDRLELLLRSFKKRYPHLQNCRQVLQYLGDKFRVVFQASLDMTDYEVGKEF 347

Query: 275  IRDYIFVHL-NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLK 333
            ++  + VHL  DN DK  +L+FM++KL+ LV      DNPD+ Q+QE+LL G L  + +K
Sbjct: 348  LKRIVLVHLGKDNIDKSRMLMFMIRKLYCLVAGECSPDNPDATQHQEVLLGGFLYGMIIK 407

Query: 334  EKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLAT 393
            EK+E++L+  +  IQ ++ N G   +F +   + +V+ +  ++ IG  ++  L TG L +
Sbjct: 408  EKIEEYLQNIRLQIQSDV-NRGIAVNFKDRKYMSRVLMR-VNENIGAKLQYFLSTGNLVS 465

Query: 394  QTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVH 453
            Q+GLDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPVH
Sbjct: 466  QSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVH 525

Query: 454  TPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGP 513
            TPDG PCGLLNH    C++++         D SK    I  +L  +G+ P+    V +  
Sbjct: 526  TPDGSPCGLLNHFAHKCKIST------TQTDVSK----IPSILYALGVSPA--SNVSAAG 573

Query: 514  PAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV-IPDDLEVGYVPLSLGGAYPGL 572
            P++  + LDG+++G     +   V   LR  KV   +  +  DLEVGYVP S  G YPGL
Sbjct: 574  PSMCCIQLDGKIIGWCSHEQGRIVADTLRFWKVEGKTPGLSVDLEVGYVPPSSRGQYPGL 633

Query: 573  YLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEI 632
            Y+F    + +RPVR + L  E+     ++GPFEQV+M I         + N    TH E 
Sbjct: 634  YIFGGHSRMMRPVRYLPLDKED-----IVGPFEQVYMNIAVTP--QEIQNNVH--THVEF 684

Query: 633  HPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPI 692
             PT +LS++ANLTP+SD NQSPRNMYQCQM KQTMG     L  R+D KLY LQT QTPI
Sbjct: 685  SPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVPLCHRSDNKLYRLQTGQTPI 744

Query: 693  VRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDL 752
            V+   Y  YG+D++P GTNA+VAV++YTGYDM+DAMI+NKS+ +RG  +G +Y+TE +DL
Sbjct: 745  VKAKLYDDYGMDDFPNGTNAVVAVISYTGYDMDDAMIINKSADERGFAYGTVYKTEKVDL 804

Query: 753  SDDGNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRT 810
            S + ++ D   + F    D   K     +D DG+P +G  +  G+P C+ +D T N  + 
Sbjct: 805  SMNRSRGDPITQHFGFGNDEWPKEWLEKLDDDGMPILGTYVEEGDPICAYFDDTLNKTKI 864

Query: 811  NSRKGSESVFVDYVAV--DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLW 868
             +   SE  +++ V +  D  N     Q   I++R  R P IGDKFSSRHGQKGVCS+ W
Sbjct: 865  KTYHSSEPAYIEEVNLIGDESNKFQELQCVTIKYRVRRIPQIGDKFSSRHGQKGVCSRKW 924

Query: 869  PDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKK 928
            P IDMPF+  TGM+PD+IINPHAFPSRMTI M +ES+A K G+LHG   D+TP+      
Sbjct: 925  PTIDMPFTE-TGMQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPWT----- 978

Query: 929  TNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHM 988
                   +ES +  D  G+ L   G+NYHG E +YSGV G EL  +I+IG VYYQRLRHM
Sbjct: 979  ------FNESDTPADYFGDQLLKAGYNYHGNEPMYSGVTGEELRADIYIGVVYYQRLRHM 1032

Query: 989  VSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYH 1048
            V+DKFQVRSTG ++ +T QP+KGRKR GGIR GEMERD+L+ HG ++LL DRL   SDY 
Sbjct: 1033 VNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIGHGTSFLLQDRLLNSSDYS 1092

Query: 1049 VADVCSLCGSVLTATFIHPQKRAIREIGGLPPAR----------APKKVT---------- 1088
             + VC  CGS+LT       + ++  IG +   R          A K ++          
Sbjct: 1093 QSAVCRECGSILTT------QSSVPRIGSMSTIRCRRCAVTFDDAKKMLSQYEDDSVFID 1146

Query: 1089 -CHACQTSKGME--------TVAMPYVFRYLAAELAAMNIKI 1121
              H  +  +G +        TVA+P+V +YL +ELAAM I++
Sbjct: 1147 DSHIWEDGQGNKFVGGSNTTTVAIPFVLKYLDSELAAMGIRL 1188


>gi|344248836|gb|EGW04940.1| DNA-directed RNA polymerase I subunit RPA2 [Cricetulus griseus]
          Length = 996

 Score =  872 bits (2252), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/1060 (44%), Positives = 638/1060 (60%), Gaps = 76/1060 (7%)

Query: 77   MLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFR 136
            M+K++ C+L     Q L+   EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R  ++
Sbjct: 1    MVKSKLCNLYNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWK 60

Query: 137  DRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDT 196
             R  GYT   V + CVR++ S+V + L+Y+ NG+V L F  + + + LP+G VLKALV  
Sbjct: 61   SRGLGYTHFGVSMHCVREEHSAVNMNLHYVENGTVMLNFIYRKELFFLPLGFVLKALVSF 120

Query: 197  NDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ 256
            +D +IF  L           KG          V  +L  V +   +T+ Q L ++GE F+
Sbjct: 121  SDYQIFQELI----------KGKEEDSFFKNSVSQMLRTVMEEGCSTQKQVLNYLGERFR 170

Query: 257  PVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
              +   +       A+ +  + I +HL  + +KF LL  M +KLF+L     + DNPDSL
Sbjct: 171  VKLSLPEWYPNEEAAKFLFNECICIHLKSDTEKFYLLCLMTRKLFALARGECMEDNPDSL 230

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             NQE+L PG L  ++LKEK+E+WL   K  +    +      +  NL  I  +       
Sbjct: 231  VNQEVLTPGQLFLMFLKEKMENWLASIKIALDKRAQKTNVSINNENLLKIFSM-----GT 285

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
            ++    E +L TG L ++TGL   Q +G  V A++LNF+R++S FR VHRGA FA +RTT
Sbjct: 286  ELTRPFEYLLATGNLRSKTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTT 345

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
            +VR+LLPESWGFLCPVHTPDG PCGLLNH+T+ C V + +              S+  +L
Sbjct: 346  TVRRLLPESWGFLCPVHTPDGAPCGLLNHLTAICEVVTKF----------VYTASVPALL 395

Query: 497  IGVGMIPSLPKLVKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVI 552
             G+G+ P     V + P    S    VLLDG +VG +       V   LRR KV     I
Sbjct: 396  CGLGVTP-----VDATPCRPYSDCYPVLLDGVMVGWVDKELAPDVADTLRRFKVLREKRI 450

Query: 553  PDDLEVGYVPLS-LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEI 611
            P  +EV  VP++     YPGL+LFT+P + VRPV+N+ L  EE     LIG  EQ+FM +
Sbjct: 451  PPWMEVALVPMTGKPSLYPGLFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQLFMNV 505

Query: 612  RCPDGGDGGRRNAFP--ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGF 669
               +         F   +TH+E+ P  +LSV+AN  P+SDHNQSPRNMYQCQM KQTMGF
Sbjct: 506  AIFED------EVFSGISTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGF 559

Query: 670  SVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMI 729
             +   + R+D KLY LQTPQ+P+VR   Y  Y +D YP GTNAIVAV++YTGYDMEDAMI
Sbjct: 560  PLLTFQDRSDNKLYRLQTPQSPLVRPCMYDYYSMDNYPIGTNAIVAVISYTGYDMEDAMI 619

Query: 730  LNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQ 789
            +NK+S +RG  HG +Y++E IDLS+   + +       +  D + +   +D DGLP++G 
Sbjct: 620  VNKASWERGFAHGSVYKSEFIDLSEKFKQGNDNLVFGIKPGDPRVMQK-LDDDGLPFIGA 678

Query: 790  MIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNP 848
             +  G+PY S  +  T        K  E+  VD + V   ++ +   K   I  R  RNP
Sbjct: 679  KLQFGDPYYSYLNLNTGEGFVVYYKSKENCIVDNIKVCSNDTGSGKFKCICITIRVPRNP 738

Query: 849  IIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
             IGDKF+SRHGQKG+ S+LWP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 739  TIGDKFASRHGQKGILSRLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGK 797

Query: 909  GGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYG 968
              +LHG   DATPF  S           E  S +   GEML+  G+N++G E LYSG+ G
Sbjct: 798  SAALHGLCHDATPFIFS-----------EESSALGYFGEMLKAAGYNFYGTERLYSGISG 846

Query: 969  TELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSL 1028
             EL  +IFIG VYYQRLRHMVSDKFQVR+TG  D++T QPI GR   GGIRFGEMERD+L
Sbjct: 847  MELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFGEMERDAL 906

Query: 1029 LAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP---K 1085
            LAHG ++LLHDRL  CSD  VA VC  CGS+L+     P           PP+ +    +
Sbjct: 907  LAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKP-----------PPSWSAMRNR 955

Query: 1086 KVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
            K  C  C  S  ++TV++PYVFRY  AELAAMNIK+ L +
Sbjct: 956  KYNCTVCGRSDTIDTVSVPYVFRYFVAELAAMNIKVKLDV 995


>gi|425766233|gb|EKV04857.1| DNA-directed RNA polymerase [Penicillium digitatum PHI26]
 gi|425779048|gb|EKV17139.1| DNA-directed RNA polymerase [Penicillium digitatum Pd1]
          Length = 1268

 Score =  871 bits (2250), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/1189 (41%), Positives = 699/1189 (58%), Gaps = 155/1189 (13%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPV--VRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
            CR+   +Y GKL A +E+Q ++ G  +  VRE    G  P+M++T RCHL+ A   +LV 
Sbjct: 128  CRERHSTYRGKLRARLEYQ-VNNGDWMESVRE---LGNVPIMVRTNRCHLEKATPDELVR 183

Query: 96   LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
              EE+ E+GG++I+NG E++ R +++ K+NYPMS++R SF  R + YT   V IR VR D
Sbjct: 184  HNEESEELGGFYIVNGNEKLIRMLVVGKRNYPMSIIRGSFVKRGQTYTKFGVQIRSVRPD 243

Query: 156  QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
            Q+S T  L+YL +G+V   F  +  EYL+PV ++LKAL +TND EIF  +      K  K
Sbjct: 244  QTSQTNVLHYLSDGNVTFRFSWRKNEYLIPVMMILKALAETNDREIFEAIVGGASSKGMK 303

Query: 216  EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
                  +  V++RV+++L         ++  C  H+G+ F+PV+          V    +
Sbjct: 304  ------NTFVTDRVELLLRTYHAYQKHSQYDCRSHLGKAFRPVLGVPADMPDEEVGTEFL 357

Query: 276  RDYIFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
            R  +  HL + N       DKF L+ FM++KL+S V      DNPD++ NQEILL G L 
Sbjct: 358  RKVVLPHLGNENVTEAQDWDKFKLITFMIRKLYSTVAGDCAPDNPDAVSNQEILLGGFLY 417

Query: 329  TIYLKEKLEDWLRKGKKLIQD-EIENNGKKF--DFFNLANIKKVMEKNPSKQIGTSIETM 385
             + LKE++E+WLR    + +D  I NNG KF  + F    + K+++++ ++ IG ++E  
Sbjct: 418  GMILKERIEEWLRSFGPIARDWSIRNNGAKFTDEAFERDFLSKIVKRS-NENIGNALEYF 476

Query: 386  LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
            L TG L + TGLDLQQ +GYTV AE++NF RFIS FR +HRG+ FA L+TT+VRKLLPES
Sbjct: 477  LSTGNLVSPTGLDLQQTSGYTVIAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPES 536

Query: 446  WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
            WGFLCPVHTPDG PCGLLNH+   C +++      +  D S++     R L+ +G     
Sbjct: 537  WGFLCPVHTPDGSPCGLLNHLAHKCFIST------DNLDVSQLP----RTLVQLG----- 581

Query: 506  PKLVKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYV 561
               V+S     L     V LDGR++G     + +++   +R  KV   + IP +LE+GY+
Sbjct: 582  ---VRSESSVALDESVVVQLDGRIIGYCSPKQAQRIADTIRYWKVEGKNNIPRELEIGYI 638

Query: 562  PLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGR 621
            P S GG YPG+Y+F+   +  RPV+ ++L       ++ +GPFEQ FMEI C +      
Sbjct: 639  PNSSGGQYPGVYMFSQSARMYRPVKYLAL-----DKLDYVGPFEQPFMEIACVES----- 688

Query: 622  RNAFP--ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRAD 679
             +  P  +TH E  PT +LS+VAN+TP+SD+NQSPRNMYQCQM+KQTMG    ++  R D
Sbjct: 689  -DLIPGLSTHIEFTPTNILSIVANMTPFSDYNQSPRNMYQCQMSKQTMGTPGTSIAHRTD 747

Query: 680  QKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGM 739
             KLY +QT QTPIVR   Y  YG+D +P G NA+VA+++YTGYDM+DAMI+NKS+ +RG 
Sbjct: 748  NKLYRIQTGQTPIVRPPLYNAYGLDNFPNGMNAVVAIISYTGYDMDDAMIINKSAHERGF 807

Query: 740  CHGQIYQTETIDLSDDGNKVDRGQ----KLF---RRNKDAKSLHSVIDSDGLPYVGQMIH 792
             HG +Y+T+ + L+D+ ++  + +    KLF     ++  + + ++ID DG+P++G  + 
Sbjct: 808  GHGTVYKTKVVTLADNDSRRTKSKREVTKLFGFAPGDEVKEQVRNIIDEDGMPHLGARVK 867

Query: 793  PGEPYCSI----YDKTTNSW-------RTNSRKGSESVFVDYVAVDMKNSKNLP-QKANI 840
             G+   +     +D  ++S+            K +E  +VD + +    S N P Q  +I
Sbjct: 868  EGDKIAAWHNVRFDPASDSYVNVDGVTHYMKYKDAEEGYVDSIRLMGSESGNEPAQSLSI 927

Query: 841  RFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSR----- 895
            ++R  R P+IGDKFSSRHGQKGV SQLWP +DMPFS  +GM+PDLIINPHAFPSR     
Sbjct: 928  KYRIPRKPVIGDKFSSRHGQKGVLSQLWPAVDMPFS-ESGMQPDLIINPHAFPSRKAPLL 986

Query: 896  --------------MTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSL 941
                          MTIA ++ES+A K G++HG   D+TPF  S           E  + 
Sbjct: 987  LRSKKTHSSNAFPGMTIAQMIESMAGKAGAMHGLPQDSTPFQFS-----------EENTA 1035

Query: 942  VDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTM 1001
             D  GE LR  G+NY+G E LYSG+ G E + +I++G VYYQRLRHMV+DKFQVR+TG +
Sbjct: 1036 TDYFGEQLRKAGYNYYGNEPLYSGITGREFSADIYMGLVYYQRLRHMVNDKFQVRTTGPV 1095

Query: 1002 DQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLT 1061
            + +T QP+KGR +GGGIR GEMERDSL+AHGAA+LL DRL  CSD     +C  CGS L+
Sbjct: 1096 NALTGQPVKGRAKGGGIRVGEMERDSLIAHGAAFLLQDRLMNCSDAQHTWICRSCGSFLS 1155

Query: 1062 A-----------TFIHP-------------------QKRAIREIGGLPPA----RAPKKV 1087
                        T I+P                      AI  +GG+       R  ++ 
Sbjct: 1156 TQVAVSGSSRSRTAINPGAAAAAAKAAPNQQSTNAHAGSAIGALGGVNGVVRCRRCAREA 1215

Query: 1088 TC-------------HACQTSKGMETVAMPYVFRYLAAELAAMNIKITL 1123
            T              H       +  VA+P V RYL  ELAAM I++  
Sbjct: 1216 TFDDSRAEVWEDGDGHRYVGGDNVTIVAVPGVLRYLDVELAAMGIRMKF 1264


>gi|225557526|gb|EEH05812.1| DNA-directed RNA polymerase I [Ajellomyces capsulatus G186AR]
          Length = 1242

 Score =  870 bits (2249), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/1167 (42%), Positives = 683/1167 (58%), Gaps = 126/1167 (10%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDA-GSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
             CR+   +Y G+L A +E++  +      VRE    GQ P+ML++ RCHL+    ++LV 
Sbjct: 126  ECRERHATYRGRLRARLEYRVNNGEWKESVRE---LGQVPIMLRSNRCHLEKCSPEQLVQ 182

Query: 96   LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
             KEE+ E+GGYFI+NG E++ R +I+ ++N+PM+++RSSF  R + YT   + IR VR D
Sbjct: 183  RKEESEELGGYFIVNGNEKLIRMLIVGRRNFPMAIIRSSFTKRGQTYTKYGIQIRSVRID 242

Query: 156  QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
            Q+S T  L+YL +G+V   F  +  EYL+PV ++LKALV+TND EIF  L        ++
Sbjct: 243  QTSQTNVLHYLSDGNVTFRFSWRKNEYLVPVVMILKALVETNDREIFERLVG------RE 296

Query: 216  EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
                + +  V++RV+++L   +   L  R     ++GE F+PV+          V    +
Sbjct: 297  GSEGIKNSFVTDRVELLLRTYKGYKLYGRDDTRAYLGEKFRPVLGMPADIPDDMVGAEFL 356

Query: 276  RDYIFVHLND-------NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
            R  +  HL +       +NDKFN+++FM++KL++LV      DNPD++ NQE+LL G L 
Sbjct: 357  RKVVLPHLGNQNVTESQDNDKFNMILFMIRKLYTLVAGECAPDNPDAVSNQEVLLGGSLY 416

Query: 329  TIYLKEKLEDWLRKGKKLIQD-EIENNGKKFD--FFNLANIKKVMEKNPSKQIGTSIETM 385
             + LKE+LE+WLR    + +D    N   +F    F    + +++ +  ++ IG ++E  
Sbjct: 417  GMLLKERLEEWLRAFGPIARDWSFRNQNARFSDPRFEKEFLSRIVSRT-NENIGGALEYF 475

Query: 386  LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
            L TG L + TGLDLQQ +GYTV AE++NF RFIS FR +HRG+ FA L+TT+VRKLLPES
Sbjct: 476  LSTGNLVSPTGLDLQQPSGYTVIAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPES 535

Query: 446  WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
            WGFLCPVHTPDG PCGLLNH+   C +A+      N+ D S +   I  + +      SL
Sbjct: 536  WGFLCPVHTPDGSPCGLLNHLAHKCEIAT-----SNL-DVSGVPQVISDLGVTYESSVSL 589

Query: 506  PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
             + V        +V LDGR++G     +   +   LR  KV+    +P +LE+GY+P S 
Sbjct: 590  DESV--------AVQLDGRILGYCSPKQARMISDTLRYWKVAGNKSLPVELEIGYIPNSN 641

Query: 566  GGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNA 624
             G YPG+Y+F+   + +RPV+ + L       ++ +GPFEQ FMEI C P     G    
Sbjct: 642  RGQYPGIYIFSQCARMMRPVKYLPL-----DKLDYVGPFEQPFMEIACVPSDIMSG---- 692

Query: 625  FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
              +TH E  PT +LS+VAN+TP+SD NQSPRNMYQCQM+KQ MG    ++++R D KLY 
Sbjct: 693  -ISTHVEFDPTHILSIVANMTPFSDFNQSPRNMYQCQMSKQAMGTPGASIEYRTDNKLYR 751

Query: 685  LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI 744
            LQT QTP+VRT  Y  YG+D +P G NA+VAVL+YTGYDM+DAMI+NKS+ DRG   G I
Sbjct: 752  LQTGQTPVVRTPLYNSYGLDNFPNGMNAVVAVLSYTGYDMDDAMIINKSAHDRGFGWGTI 811

Query: 745  YQTETIDLSDDGNKVDRGQKLFRRNKD-----------AKSLHSVIDSDGLPYVGQMIHP 793
            Y+T+   L D   K  RG+   RR                     +D DGLP++G  +  
Sbjct: 812  YKTKIYSLDD---KESRGRGKARREVSKLFGFAPGSLIKGEWRHALDEDGLPHIGARVTE 868

Query: 794  GEPYCSI----YDKTTNSWRTN--------SRKGSESVFVDYVAVDMKNSKNLP-QKANI 840
            G    +     +D  +NS+ TN          K +E  ++D V +    +   P Q  ++
Sbjct: 869  GSIVAAWHTVRFDPVSNSY-TNIDGQTHLLKYKDTEEGYIDNVRIFGSETGGDPCQAISV 927

Query: 841  RFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAM 900
            +FR  R P+IGDKFSSRHGQKGVCSQLWP  DMPFS  TG++PD+IINPHAFPSRMTI M
Sbjct: 928  KFRVPRKPVIGDKFSSRHGQKGVCSQLWPATDMPFS-ETGIQPDIIINPHAFPSRMTIGM 986

Query: 901  LLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVE 960
             +ES+A K G+LHG   D+TPF  S           E  +  D  GE LR  G+N+HG E
Sbjct: 987  FIESLAGKAGALHGLAQDSTPFRFS-----------EEHTASDFFGEQLRKAGYNFHGNE 1035

Query: 961  VLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRF 1020
             +YSG+ G E   +I++G VYYQRLRHMV+DKFQVR+TG ++ +T QP+KGR +GGGIR 
Sbjct: 1036 PMYSGITGREFAADIYLGVVYYQRLRHMVNDKFQVRTTGPVNALTGQPVKGRAKGGGIRV 1095

Query: 1021 GEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLT-----ATFIHPQKR----- 1070
            GEMERDSLLAHGAA+LL DRL  CSD   + +C  CGS L+     + F+ P K      
Sbjct: 1096 GEMERDSLLAHGAAFLLQDRLMNCSDTTRSWICRTCGSFLSTQVAVSKFMAPSKNPAMAA 1155

Query: 1071 ------AIREIGGLPPA--RAPKKVTCHACQTSKGME----------------------T 1100
                   +   GG   A       V C  C      +                       
Sbjct: 1156 VAKSSSGLGRPGGAMGALDGGAGVVRCRRCAKEAVFDDPRAEVWEDGEGRRFVGGDDTTV 1215

Query: 1101 VAMPYVFRYLAAELAAMNIKITLQLGD 1127
            VA+P V +YL  ELA M +K+T ++ +
Sbjct: 1216 VAVPGVLKYLDVELATMGVKMTFKVNN 1242


>gi|340923939|gb|EGS18842.1| RNA polymerase-like protein [Chaetomium thermophilum var.
            thermophilum DSM 1495]
          Length = 1235

 Score =  870 bits (2248), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/1149 (42%), Positives = 683/1149 (59%), Gaps = 113/1149 (9%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSP--VVRERFNFGQFPVMLKTRRCHLQGADSQKLV 94
             CR+  ++Y GKL A  E++ ++ G P   VRE    GQ P+M+K+ +CHL+      LV
Sbjct: 117  ECRERHVTYRGKLTATFEYR-INDGEPQEFVRE---LGQMPIMVKSNKCHLENNPPALLV 172

Query: 95   SLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRK 154
              KEE+ E+GGYFI+NG+E++ R +++ ++N+P++++R SF +R   YT   +++R VR 
Sbjct: 173  QRKEESEELGGYFIINGIEKIIRMLLVNRRNFPLAIIRPSFTNRGPSYTQYGIIVRSVRP 232

Query: 155  DQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYK 214
            D++S T  L+YL +G+V   F  +  EYL+PV ++LKALV+TND EIF  L    + K  
Sbjct: 233  DETSQTNVLHYLSDGNVTFRFSWRKNEYLVPVMMILKALVETNDREIFEGLVGPPNSK-- 290

Query: 215  KEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETV 274
                 + +  +++RV+++L   +   L T+ Q   ++G  F+ V+    + S Y V    
Sbjct: 291  ----GIENTFLTDRVELLLRTYKKYGLYTKSQTRAYLGSKFRVVLGVPDTMSDYEVGTEF 346

Query: 275  IRDYIFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
            +R  + VHL   N       DKF +L+FM +KL++LV      DNPD++QNQEILL G L
Sbjct: 347  LRKIVLVHLGCVNVTEEQDLDKFKMLLFMCRKLYALVAGDCAVDNPDAVQNQEILLGGFL 406

Query: 328  ITIYLKEKLEDWLRKG-KKLIQDEIENN------GKKFDF-FNLANIKKVMEKNPSKQIG 379
              + LKE+LE+ L    +  ++D +  N       + F   F +A  ++  E      IG
Sbjct: 407  YGMILKERLEELLSVSLRAALRDYLRRNPTISFTSQTFQKDFPIAIFRRTNE-----NIG 461

Query: 380  TSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVR 439
             ++E  L TG L + +GLDLQQ +G+TV AE+LNF RFIS FR VHRG+ FA L+TT+VR
Sbjct: 462  NALEYFLSTGNLQSPSGLDLQQVSGFTVVAEKLNFWRFISHFRMVHRGSFFAQLKTTTVR 521

Query: 440  KLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGV 499
            KLLPESWGFLCPVHTPDG PCGLLNH+   C++ +      +  D S +  +++   +GV
Sbjct: 522  KLLPESWGFLCPVHTPDGAPCGLLNHLAHKCKIMT------DTLDTSAVPGAVME--LGV 573

Query: 500  GMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVG 559
                S      +     + V+LDGR++G         +   LRR KV     IP  LE+G
Sbjct: 574  NDYSS------AATSESVVVMLDGRIIGWCTPKASRIIAETLRRWKVEGNHGIPLQLEIG 627

Query: 560  YVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGD 618
            YVP S GG+YPG+Y+ + P + VRPV+ ++L  E+      +GP EQ +M I C P+   
Sbjct: 628  YVPPSKGGSYPGIYMASKPARMVRPVKYLALAKED-----FVGPHEQPYMSIACTPEEII 682

Query: 619  GGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRA 678
             G       TH E  PT +LS++AN+TP+SD NQSPRNMYQCQM KQTMG    A+K+R 
Sbjct: 683  PGDH-----THVEYDPTNILSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPGAAIKYRT 737

Query: 679  DQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRG 738
            D K+Y LQT QTPIVR+  +  YG D +P GTNA+VAV++YTGYDM+DAMI+NKS+ +RG
Sbjct: 738  DNKMYRLQTGQTPIVRSPLHNVYGFDNFPNGTNAVVAVISYTGYDMDDAMIINKSAHERG 797

Query: 739  MCHGQIYQTETIDLSDDGNKVDRGQKLFRR-------NKDAKSLHSVIDSDGLPYVGQMI 791
              HG IY+T+ I L DD     R  K   +                ++D DGLP+VG+++
Sbjct: 798  FGHGTIYKTKKISLKDDTRT--RTSKTITKMFGFAPGTPIRPEYREMLDEDGLPHVGRLV 855

Query: 792  HPGEPYCSIYDKTTN------------SWRTNSRKGSESVFVDYVAVDMKNSKNLP-QKA 838
              G+  C+ +  + +             W     K +E  FV+ V V    + N P Q  
Sbjct: 856  REGDILCAWHTVSADYSGKLVNKDGITHW--ERYKDAEDAFVEEVRVIGSETGNEPLQTV 913

Query: 839  NIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTI 898
            +I+ R  R+P+IGDKFSSRHGQKGVCSQ WP IDMPFS  +G++PD+IINPHAFPSRMTI
Sbjct: 914  SIKLRIPRSPVIGDKFSSRHGQKGVCSQKWPAIDMPFSE-SGIQPDVIINPHAFPSRMTI 972

Query: 899  AMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHG 958
             M +ES+A K G+LHG   D+TPF             DE  +  D  G  L   GFNYHG
Sbjct: 973  GMFVESLAGKAGALHGLAQDSTPFR-----------FDEEHTAADYFGHQLMKAGFNYHG 1021

Query: 959  VEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGI 1018
             E +YSG+ G E  C+I+IG VYYQRLRHMV+DK+QVR+TG +   T QPIKGRK+GGGI
Sbjct: 1022 NEPMYSGITGEEFACDIYIGVVYYQRLRHMVNDKYQVRTTGPVVPTTGQPIKGRKKGGGI 1081

Query: 1019 RFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTAT-FIHPQKRAIREIGG 1077
            R GEMERD+LLAHG A+LL DRL  CSDY  + +C  CGS L     + P     +++G 
Sbjct: 1082 RVGEMERDALLAHGTAFLLQDRLLNCSDYSRSWICRDCGSFLAVQPTVSPFIGKRKQVGT 1141

Query: 1078 LPPARAPK-----------KVTCHACQTSKGME--------TVAMPYVFRYLAAELAAMN 1118
            +      K           K+     +  +G++         V +P   ++L  ELAAM 
Sbjct: 1142 VRCRNCAKRLDQIEDLDLMKLEGEIWEDGQGVQWIGGENTTMVVVPGALKFLDVELAAMG 1201

Query: 1119 IKITLQLGD 1127
            +K+  ++ +
Sbjct: 1202 VKLKYRVDN 1210


>gi|428164204|gb|EKX33238.1| hypothetical protein GUITHDRAFT_158927 [Guillardia theta CCMP2712]
          Length = 1090

 Score =  870 bits (2247), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/1100 (43%), Positives = 662/1100 (60%), Gaps = 103/1100 (9%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR+ +++Y   L A +  + L+   P+  +R   G+ P+M +++RCHLQG   ++L+   
Sbjct: 82   CRELRLTYKAPLYATIAVR-LEGAEPIEIDR-KLGELPIMTRSQRCHLQGMSQKQLMQHG 139

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EE  E GGYFI NG E+V R + L ++NYPM+++R SF  R   YT    ++RCVR+DQS
Sbjct: 140  EEPFEFGGYFIANGNEKVIRLLSLMRRNYPMALIRPSFTKRGSSYTKFGCMMRCVREDQS 199

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
              TL L+YL  G+  L   ++ +EYL+P  ++LKA+  ++D +IF ++           +
Sbjct: 200  GSTLTLHYLSTGNCTLSVKIRKQEYLIPAVMILKAMTGSSDEQIFTNVV----------Q 249

Query: 218  GAVGSPLVSERVKIILAE-VQDLSLTTRLQCLQHIGEHFQPV-IDGL---QSESYYAVAE 272
            G   +  VS+R+++ L +  + + L T+   L ++G+ F+ V I  L      S   + +
Sbjct: 250  GDATNTFVSDRIEVALRDSTKYIGLRTKEDFLGYLGQRFRVVLIRSLYLPDDVSDVEIGQ 309

Query: 273  TVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYL 332
             ++ +Y F+HL+ + DK+N L+ M+QKL++LV      D+PDSL  QE+LLPGHL+T+ +
Sbjct: 310  KLLDNYFFIHLDSDEDKWNCLVVMMQKLYALVSGAIQPDSPDSLHCQEVLLPGHLMTMMV 369

Query: 333  KEKLEDWLRKGKKLIQDEIENNGKKFDFF----NLAN---IKKVMEKNPSKQIGTSIETM 385
            KEKL+D+L      IQD    + +    F    NLA+   I+ ++ +NP   IG  IE  
Sbjct: 370  KEKLQDYLAG----IQDVFLKDQRPGSSFASQVNLADQSYIESLLMRNPV-DIGRKIEYF 424

Query: 386  LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
            + TG L +QTGLDL Q +GYT+ AERLNFLR++S FR++HRG  F  +++T+VRKLLPES
Sbjct: 425  MSTGNLVSQTGLDLSQVSGYTIVAERLNFLRYLSHFRSIHRGQFFTTMKSTAVRKLLPES 484

Query: 446  WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
            WGF+CPVHTPDG PCGLLNH+TS C + S++     ++       ++    +  G +P  
Sbjct: 485  WGFVCPVHTPDGGPCGLLNHLTSVCTLHSHFVPPAALKAVEDAVLTLGASPVSAGGLP-- 542

Query: 506  PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
               V  G  A L ++LDGR++G + + E  ++V  +R LK      IP+ LE+ +VP   
Sbjct: 543  ---VVMGREA-LPIMLDGRMIGRVGAQEAVQLVGRMRLLKAEGLRGIPEFLEIAHVPPRT 598

Query: 566  GGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAF 625
             G +PG++LFT+P + +RPVR +S     S   E IG FEQ+ MEI         R++  
Sbjct: 599  NGLWPGVFLFTTPARMMRPVRQLS-----SGQHEWIGTFEQIHMEIAVMGKEVRPRQH-- 651

Query: 626  PATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHL 685
              TH E+ P  MLSVVA  TP+SD NQSPRNMYQCQM KQTMG  + A   R D K+Y +
Sbjct: 652  --THMELSPMNMLSVVAQCTPFSDMNQSPRNMYQCQMGKQTMGTPMYAYNERVDNKVYRI 709

Query: 686  QTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIY 745
             TPQ P+VR        +D+YPTGTNA+VAV++YTG+DMEDAMI+NK + DRG  +G +Y
Sbjct: 710  LTPQVPLVRNQAQDNLRMDDYPTGTNAVVAVISYTGFDMEDAMIINKGAYDRGFGNGHVY 769

Query: 746  QTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTT 805
             T  +DL+       R    F   KD  S    +D DGLP VG ++  G+      D  T
Sbjct: 770  TTTIVDLTKSAPPGSR----FDNPKD-DSYVDHLDGDGLPQVGSILQQGQELYRSVDPAT 824

Query: 806  NSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCS 865
               +    K +E+V VD V +         QK +I+ R+ R P+IGDKFSSRHGQKGV S
Sbjct: 825  GRSKCVMHKSAEAVQVDAVRLLGDGPTKPLQKISIKLRYDRRPVIGDKFSSRHGQKGVLS 884

Query: 866  QLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANS 925
             LWP  +MPFS  TGM PD+IINP+AFPSRMTI ML+ES+A K G++HG F D+TPF   
Sbjct: 885  TLWPQENMPFSE-TGMTPDVIINPNAFPSRMTIGMLVESMAGKAGAMHGYFPDSTPFR-- 941

Query: 926  VKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRL 985
                      DE    +D  GE LR  G+NYHG EVLYSGV G  +  +IF+G VYYQRL
Sbjct: 942  ---------FDEETRAIDHFGEQLRAAGYNYHGTEVLYSGVSGMMMEAQIFMGLVYYQRL 992

Query: 986  RHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCS 1045
            RHMVSDK+Q R+TG +++ TRQP+KGRK GGG+RFGEMERD LLAHGA++LL        
Sbjct: 993  RHMVSDKYQCRATGPVNKYTRQPVKGRKAGGGVRFGEMERDGLLAHGASFLLRQ------ 1046

Query: 1046 DYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPY 1105
                                                R  +++ CH C+T   +  VA+P+
Sbjct: 1047 ------------------------------------RGKQRLYCHKCKTGASVSCVAVPF 1070

Query: 1106 VFRYLAAELAAMNIKITLQL 1125
            VFRYL AELAAMNI +  +L
Sbjct: 1071 VFRYLLAELAAMNINVRCEL 1090


>gi|452840518|gb|EME42456.1| hypothetical protein DOTSEDRAFT_155234 [Dothistroma septosporum
            NZE10]
          Length = 1207

 Score =  870 bits (2247), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/1137 (42%), Positives = 682/1137 (59%), Gaps = 94/1137 (8%)

Query: 38   CRQAKISYTGKLMADVEFQYLDA-GSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
            CR+   +Y G+    +E++  D   +  VR+   FG  P+ML++ RCHL+G   ++LV+ 
Sbjct: 116  CRERHCTYRGRFRGRLEYRINDGEWAETVRD---FGHLPIMLRSNRCHLEGLSPKELVNR 172

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
            +EE  E+GGYFI+NG+E++ R +I+ ++N+P++++R SF +R   YT  AV IR VRKDQ
Sbjct: 173  REETEELGGYFIVNGIEKLIRMLIVNRRNFPLALIRPSFENRGATYTKFAVQIRSVRKDQ 232

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
            +S +  L+YL +G+V   F  +  EYL+PV +VLKALV+TND EIF  +           
Sbjct: 233  TSQSNTLHYLNDGNVIFRFSWRKNEYLVPVMLVLKALVETNDREIFEGIVGP-----AGG 287

Query: 217  KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
            KG      V++RV+ +L   +   L  + +   +IG  F+PV++  ++ S        +R
Sbjct: 288  KGLESRQFVTDRVEHLLRTFKAFPLHGKAKARAYIGAKFRPVLNVPEALSDQEAGTEFVR 347

Query: 277  DYIFVHLND-------NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
              +  HL         +NDKF +L+FM +KL+SL +     DNPD++QNQEILLPG L  
Sbjct: 348  KIVLPHLGSYDVTEAQDNDKFRMLVFMTRKLYSLAEGECTLDNPDAVQNQEILLPGFLFG 407

Query: 330  IYLKEKLEDWLRKGKKLIQDEIENNGK--KFDFFNLANIKK----VMEKNPSKQIGTSIE 383
            + +KE++E+WL      I D +   G+  ++  F     +K     + +  ++ +G  ++
Sbjct: 408  MIIKEQVEEWLNS----IGDTLRIYGRVNQYPLFTSKEFEKDFMAKVVRRTNENLGQKLD 463

Query: 384  TMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLP 443
              + TG L + +GLDLQQ +G+TV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLP
Sbjct: 464  YFMSTGNLLSPSGLDLQQVSGFTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLP 523

Query: 444  ESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP 503
            ESWGFLCPVHTPDG PCGLLNH+   C V++      +  D S +   I +  +GV  + 
Sbjct: 524  ESWGFLCPVHTPDGSPCGLLNHLAHKCLVST------DNTDASHVPALIAQ--LGVSSMA 575

Query: 504  SLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL 563
               KL  S     + V LDGR++G     + + +   LR  KV     +P DLE+G +PL
Sbjct: 576  D-AKLEDS-----VVVQLDGRILGFCSPKQAKVISDTLRYWKVEGTHHVPVDLELGLIPL 629

Query: 564  SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRN 623
            S GG YPGL++F+   + +RPV+ + L  ++     ++GPFEQ FM I C D        
Sbjct: 630  SNGGQYPGLFMFSEAARMLRPVKYLPLGKQD-----IVGPFEQPFMSIACTDPEIASND- 683

Query: 624  AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
               +TH E   T +LS+VAN TP+S+ NQSPRNMYQCQM KQTMG    ALK+R D K Y
Sbjct: 684  ---STHVEYDVTNILSIVANQTPFSNFNQSPRNMYQCQMGKQTMGTPGTALKYRTDNKSY 740

Query: 684  HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
             LQT QTP+VR   + +YG+D +P GTNA+VAV++YTGYDM+DAMILNKS+ +RG  HG 
Sbjct: 741  RLQTGQTPVVRAPKHNEYGLDNFPNGTNAVVAVISYTGYDMDDAMILNKSAHERGFGHGT 800

Query: 744  IYQTETIDLSDDGNKVDRGQK------LFRRNKDAK-SLHSVIDSDGLPYVGQMIHPGEP 796
            IY+ + IDL+++ NK  RG+        F  N   K S    +D DGL  +G  +  G+ 
Sbjct: 801  IYKAKKIDLAEE-NKQGRGRSGITHVFGFAPNSIIKASWRETLDDDGLGRIGWKVKEGDA 859

Query: 797  ----YCSIYDKTTNSW-------RTNSRKGSESVFVDYVA-VDMKNSKNLP-QKANIRFR 843
                Y  + D  T  +         +  K SE  F++ +  +  ++  N P Q  +IRFR
Sbjct: 860  IAASYSVVKDPLTGDYVNQDGITHIHKYKESEEAFIEEIKLIGNESGNNDPCQAVSIRFR 919

Query: 844  HTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLE 903
              R+P+IGDKFSSRHGQKGVCSQ WP IDMPF+  +GM+PD+IINPHAFPSRMTI M +E
Sbjct: 920  IPRSPVIGDKFSSRHGQKGVCSQKWPMIDMPFT-ESGMQPDVIINPHAFPSRMTIGMFVE 978

Query: 904  SVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLY 963
            S+A K G+LHG   D+TPF    K         E ++ ++  G  L+  G+NY+G E +Y
Sbjct: 979  SLAGKSGALHGLAQDSTPFKFEDK---------EGETAIEYFGHQLKRAGYNYYGNEPMY 1029

Query: 964  SGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEM 1023
            SG+ G EL  +I+IG VYYQRLRHMV+DK+QVR+TG +  +T QPIKGR +GGGIR GEM
Sbjct: 1030 SGITGEELAADIYIGVVYYQRLRHMVNDKYQVRTTGPVTPLTGQPIKGRAKGGGIRVGEM 1089

Query: 1024 ERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAI----------- 1072
            ERDSL+AHG A+LL DRL  CSDY  A VC  CGS L+      Q               
Sbjct: 1090 ERDSLIAHGTAFLLQDRLMNCSDYTKAHVCKTCGSFLSTQPSSGQYGGRRREGGRTRCRR 1149

Query: 1073 ---REIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLG 1126
               + +   P +   +            +  VA+P V RYL  ELAAM I++  ++G
Sbjct: 1150 CSRKALSTDPKSECWEDRKGTKWFGGDNVTVVAIPGVLRYLDVELAAMGIRMNFKVG 1206


>gi|406867542|gb|EKD20580.1| RNA polymerase Rpb2 [Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
          Length = 1209

 Score =  870 bits (2247), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/1148 (42%), Positives = 685/1148 (59%), Gaps = 120/1148 (10%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR+  ++Y   +    EF+ ++ G P    R  FG+ P+M+   RCHL+     +LV  K
Sbjct: 122  CRERHVTYRADMAVQFEFR-INNGDPQTFVR-GFGKLPLMVMGTRCHLENNTPAQLVERK 179

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EEA E+GGYF++NG+E++ R +++ ++N+PM++ R SFR+R + YT   +++R VR DQ+
Sbjct: 180  EEAEELGGYFVVNGIEKIIRLLLVNRRNFPMAIERPSFRNRGKEYTKYGMLMRSVRPDQT 239

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            S T  L+YL +G+V   F  +  EYL+PV I+LKAL +TND EIF  L            
Sbjct: 240  SQTNVLHYLNDGNVIFRFSWRKAEYLIPVMILLKALTETNDREIFEGLV----------- 288

Query: 218  GAVGS-----PLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAE 272
            GA GS       +++RV+++L   +   L T+ +   ++G  F+PV+    + S Y    
Sbjct: 289  GAAGSEGANNSFLTDRVEVLLRTHKASGLHTKSKTRAYLGGLFRPVLGVPDNMSNYDCGT 348

Query: 273  TVIRDYIFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPG 325
              +R  + VHL + N       DKF +L+FM +KL++LV      DNPD++Q+QEILL G
Sbjct: 349  EFLRKIVLVHLGNVNVTHVQDSDKFKMLLFMTRKLYALVAGDCAVDNPDAVQHQEILLGG 408

Query: 326  HLITIYLKEKLEDWLRKGKKL-----IQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGT 380
             L  + +KE+L+DW+ +  +L     ++   ENN    +F     +K   + N  + +G 
Sbjct: 409  FLYGMIIKERLDDWMTRQLRLAIRQYVRKSPENNFTTPEFLKQFPVKLCGKTN--ENLGG 466

Query: 381  SIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRK 440
            ++E  L TG L + TGLDLQQ +G+TV AE++NFLRFIS FR VHRG+ FA L+TT+VRK
Sbjct: 467  ALEYFLSTGNLVSPTGLDLQQVSGFTVVAEKINFLRFISHFRMVHRGSFFAQLKTTTVRK 526

Query: 441  LLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV-LIGV 499
            LLPESWGFLCPVHTPDG PCGLLNH++  CR+ +      +  D S +   ++ + ++G 
Sbjct: 527  LLPESWGFLCPVHTPDGSPCGLLNHLSHKCRILT------SASDVSALPALVVELGIVGA 580

Query: 500  GMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVG 559
            G   +   +V         V LDGR++G     +   +   LR  KV     +P DLE+ 
Sbjct: 581  GSASTKEAVV---------VTLDGRILGWCTPKQAIMIADTLRFWKVEGRRNVPKDLEIC 631

Query: 560  YVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC--PDGG 617
            +VP S GG YPG+Y+  +P + VRPV+ + L +E+     LIGP EQ FM I    P+  
Sbjct: 632  WVPNSHGGQYPGIYMSATPSRMVRPVKYLPLDAED-----LIGPQEQPFMSIAVTEPEII 686

Query: 618  DGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFR 677
             G       +TH E  PT +LS++AN+TP+SD NQSPRNMYQCQMAKQ+MG    A ++R
Sbjct: 687  SG------ESTHVEFDPTNILSILANMTPFSDFNQSPRNMYQCQMAKQSMGTPGTATRYR 740

Query: 678  ADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDR 737
            +D K Y LQT QTPIVR   + +YG D +P G N++VAV++YTGYDM+DAMI+NK S +R
Sbjct: 741  SDNKTYRLQTGQTPIVRAPLHNEYGFDNFPNGMNSVVAVISYTGYDMDDAMIINKGSHER 800

Query: 738  GMCHGQIYQTETIDLSDDGNKVDRG--QKL--FRRNKDAKS-LHSVIDSDGLPYVGQMIH 792
            G  HG +Y+ + +++ +  N       +KL  F    + K+ + ++ID DGLP +G+++ 
Sbjct: 801  GFGHGTVYKVKKVNIREGNNSRSSKNVEKLFGFAPGSEVKARVKAMIDEDGLPRIGRLVR 860

Query: 793  PGEPYCSIYDKTTNSWRTNSR------------------KGSESVFVDYV-AVDMKNSKN 833
             G+  C        +W T SR                  K  E  F+D V  +  +N   
Sbjct: 861  EGDMLC--------AWHTVSRDAEGKLVNKDGITHFEKYKDGEMAFIDEVRLIGNENGAE 912

Query: 834  LPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFP 893
              Q  +I+FR  R+P++GDKFSSRHGQKGV SQ WP +DMPF+  +GM+PD+IINPHAFP
Sbjct: 913  PLQVCSIKFRIPRSPVVGDKFSSRHGQKGVVSQKWPSVDMPFT-ESGMQPDVIINPHAFP 971

Query: 894  SRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCG 953
            SRMTI M +ES+A K G+LHG   D+TPF             DE  +  D  G  L   G
Sbjct: 972  SRMTIGMFIESLAGKAGALHGLAQDSTPFR-----------FDEENTAGDYFGHQLMKAG 1020

Query: 954  FNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRK 1013
            +NY+G E +YSG+ G EL C+I+IG VYYQRLRHMV+DKFQVRSTG +  +TRQP KGRK
Sbjct: 1021 YNYYGNEPMYSGITGEELHCDIYIGLVYYQRLRHMVNDKFQVRSTGPITPLTRQPAKGRK 1080

Query: 1014 RGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLT--ATFIHPQKRA 1071
            +GGGIR GEMERDSLLAHG A+LL DRL  CSDY  + +C  CG+ ++   TF       
Sbjct: 1081 KGGGIRVGEMERDSLLAHGTAFLLQDRLLNCSDYSRSWICKQCGTFMSIQPTFWAFATNR 1140

Query: 1072 IREIGGLPPARAPKKVT-----------CHACQTSKGMET--VAMPYVFRYLAAELAAMN 1118
            +R  G +   R   +                 + + G  T  VA+P V +YL  ELAAM 
Sbjct: 1141 LRGTGVVRCRRCAHRAEDSTGGAEIWEDAEGQRWAGGEHTTIVAVPAVLKYLDVELAAMG 1200

Query: 1119 IKITLQLG 1126
            IK+   +G
Sbjct: 1201 IKLKYNVG 1208


>gi|405121128|gb|AFR95897.1| DNA-directed RNA polymerase I polypeptide 2 [Cryptococcus neoformans
            var. grubii H99]
          Length = 1176

 Score =  869 bits (2246), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/1166 (41%), Positives = 693/1166 (59%), Gaps = 102/1166 (8%)

Query: 6    SADFEPLRELVRHHIESFDYMLDE-------GLSEMFDHCRQAKISYTGK-----LMADV 53
            ++D   L ELV  HI+SF+ ++++       GL +M       K+ + GK     L   +
Sbjct: 66   ASDVPALDELVAPHIKSFNALIEDEGNPGAKGLLQMGVEDIGEKVVFDGKGSEGGLGTKL 125

Query: 54   EFQY--LDAGSPVVRERFNFGQ----FPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYF 107
             ++   +    P+V E+         FP   + R           L+   EE+   GGYF
Sbjct: 126  SYRIDRVALSKPLVPEKDKLAVERRVFPTEAE-RSLRKSRNVVCCLLWFDEESTSFGGYF 184

Query: 108  ILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLL 167
            I+NG E++ R +++P+++ P+++ R SF  R   YT     IRCVR D+++ T  ++YL 
Sbjct: 185  IVNGNEKIIRYLVVPRRHNPINLYRPSFAKRGASYTPYGCQIRCVRPDETACTNTIHYLS 244

Query: 168  NGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSE 227
            NG   L F  +  EY++P+ ++LKALVD +D EIF  L           +G   +  +++
Sbjct: 245  NGGATLRFAWRKVEYMIPLMLILKALVDASDKEIFEGLI----------QGEYDNTFLTD 294

Query: 228  RVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNN 287
            RV+++L   +   L T  QCL ++GE F+ V++     S   V   ++R  + VHL    
Sbjct: 295  RVELLLRGQKSWGLHTGAQCLDYLGEKFRVVLNVPDDWSNVQVGGHLLRKVVLVHLPAPR 354

Query: 288  DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLI 347
            DKF +L+FML+KL+S V   +  DNPDS Q+ E+LLPG L  + +KE+ +D L   K  I
Sbjct: 355  DKFRMLLFMLRKLYSQVSGATCPDNPDSPQHHEVLLPGFLYGMIIKERFDDCLNAVKSQI 414

Query: 348  QDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTV 407
            Q ++ + GK   F +      V+ K  +  IG+ +   L TG L + TGLDLQQ +G+T+
Sbjct: 415  QLDLRD-GKARSFMDPKYFTSVLSKT-NWDIGSKLSYFLATGNLVSPTGLDLQQTSGFTI 472

Query: 408  QAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMT 467
             AE+LNF R++S FR +HRGA FA L+TT+VRKL+PESWGFLCPVHTPDG PCGLLNH++
Sbjct: 473  VAEKLNFYRYLSHFRCIHRGAFFAELKTTTVRKLMPESWGFLCPVHTPDGSPCGLLNHLS 532

Query: 468  STCRVASYYDSRGNIRDFSKMRTSILRVLIGV-GMIPSLPKLVKSGPPAVLSVLLDGRVV 526
             TC++ +           S +  S +  L+   GM       +      ++ + LDG+V+
Sbjct: 533  HTCQIVT-----------SSLDVSHIPALLSAQGMTQVFASSIDGR--RMVCIQLDGKVI 579

Query: 527  GVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVR 586
            G     + +++   LR+LK    S +P DLE+GYVP++ GG YPGLYLF+S  + +RPV 
Sbjct: 580  GYASPMKAKQLANRLRKLKTEVDSKVPLDLEIGYVPVTKGGQYPGLYLFSSRSRMMRPVT 639

Query: 587  NISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTP 646
             +     E+  ++ +G FEQV+M++               ++H E+ PT MLSV+ANLTP
Sbjct: 640  YL-----ENGKLDHLGSFEQVYMDVAITKE----EIEKGVSSHVELDPTSMLSVIANLTP 690

Query: 647  YSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEY 706
            +SD NQSPRNMYQCQM KQ+MG    A+  R D K+Y LQ+ QTP+VR + +  YG D +
Sbjct: 691  FSDFNQSPRNMYQCQMGKQSMGTPSTAISKRTDNKMYRLQSGQTPVVRPDLHNHYGFDNF 750

Query: 707  PTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD--DGNKVDRGQK 764
            P GTNAIVAV++YTGYDMEDAMILNKS+ +RG  +G +Y+ +  DL      ++  +   
Sbjct: 751  PNGTNAIVAVISYTGYDMEDAMILNKSAHERGFGYGTVYKADIFDLKGVPGASRSAKPTL 810

Query: 765  LFRRNKDAKSLH---SVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFV 821
             F   +D K  H   ++I  DGLP +G  +  G+P C+  D TT   + +  KG E+ F+
Sbjct: 811  HFGLGRDVKEDHDARNIISQDGLPIIGTKVKTGDPLCAYIDDTTGRTKFHKYKGDETAFI 870

Query: 822  DYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTG 880
            D V V   ++ +   QK +I+ R  R+P+IGDKFSSRHGQKGVCSQ +P IDMPFS  +G
Sbjct: 871  DEVRVLGSDAGDAELQKIHIKLRIPRSPVIGDKFSSRHGQKGVCSQKFPAIDMPFS-ESG 929

Query: 881  MRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKS 940
            M+PD+IINPHAFPSRMTI M +ES+A K G+LHG   DATPF  S K             
Sbjct: 930  MQPDVIINPHAFPSRMTIGMFVESMAGKAGALHGVAQDATPFKFSDKDRP---------- 979

Query: 941  LVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGT 1000
             VD  GE LR  G+NY+G E +YSG+ G E   +I++G VYYQRLRHMV+DKFQVR+TG 
Sbjct: 980  -VDYFGEQLRAAGYNYYGNEPMYSGITGEEFHADIYLGLVYYQRLRHMVNDKFQVRTTGP 1038

Query: 1001 MDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVL 1060
            +D +TRQP+KGRKR GGIRFGEMERD+L+AHG ++LL DRL  CSDY  A VC  CGS++
Sbjct: 1039 VDPLTRQPVKGRKRAGGIRFGEMERDALIAHGTSFLLQDRLMNCSDYSTAWVCRNCGSLV 1098

Query: 1061 TATFIHPQKRAIREIGGLPPARAPKKVTC------HACQTSKG---------------ME 1099
            +  F         E+GG    +   ++ C      HA + SK                M+
Sbjct: 1099 SLGF--------EEVGGGQGMQEYCRI-CDEHKHEHAEEKSKEKGVGVVMRGGEKKGRMD 1149

Query: 1100 TVAMPYVFRYLAAELAAMNIKITLQL 1125
             V +PYVFRYL AE+A M IK+ + +
Sbjct: 1150 VVPVPYVFRYLCAEMACMGIKLNVTV 1175


>gi|401623208|gb|EJS41314.1| rpa135p [Saccharomyces arboricola H-6]
          Length = 1203

 Score =  869 bits (2245), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/1128 (43%), Positives = 683/1128 (60%), Gaps = 103/1128 (9%)

Query: 39   RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
            RQ   SY GKL+  +++  ++ G   + E  + G  PVML++ RCHL      +LV  KE
Sbjct: 127  RQRLTSYRGKLLLKLKWS-VNNGEENLFEVRDCGGLPVMLQSNRCHLNKMSPYELVQHKE 185

Query: 99   EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
            E+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R   Y+   + IR VR DQ+S
Sbjct: 186  ESDEIGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFANRGASYSHYGIQIRSVRPDQTS 245

Query: 159  VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKG 218
             +  L+YL +G V   F  +  EYL+PV ++LKAL  T+D EIF+ +             
Sbjct: 246  QSNVLHYLNDGQVTFRFSWRKNEYLVPVVMILKALCHTSDREIFDGII----------GN 295

Query: 219  AVGSPLVSERVKIILAEVQDL--SLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
             V    +++R++++L   +     L  R Q LQ++G+ F+ V      +S   V + V+ 
Sbjct: 296  DVKDSFLTDRLELLLRGFKKRYPQLQNRTQVLQYLGDKFRVVFQASPDQSDLEVGQEVLD 355

Query: 277  DYIFVHL--NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKE 334
              + VHL  + N DKF +++FM++KL+SLV      DNPD+ Q+QE+LL G L  + LKE
Sbjct: 356  RIVLVHLGKDGNQDKFRMMLFMIRKLYSLVAGECSPDNPDATQHQEVLLGGFLYGMILKE 415

Query: 335  KLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQ 394
            K++++L+     ++ +I   G   +F +   + +V+ +  ++ IG+ ++  L TG L +Q
Sbjct: 416  KIDEYLQNIIAQVRMDI-TRGMAINFKDKRYMSRVLMR-VNENIGSKMQYFLSTGNLVSQ 473

Query: 395  TGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHT 454
            +GLDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPVHT
Sbjct: 474  SGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHT 533

Query: 455  PDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPP 514
            PDG PCGLLNH    CR+++         D SK    I  +L  +G+ P+         P
Sbjct: 534  PDGSPCGLLNHFAHKCRISTQQS------DVSK----IPSILYSLGVAPASHTFAAG--P 581

Query: 515  AVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV-IPDDLEVGYVPLSLGGAYPGLY 573
            ++  V +DG+V+G +   +   +   LR  KV   +  +P DLE+GYVP S  G YPGLY
Sbjct: 582  SLCCVQIDGKVIGWVSHEQGMIIADTLRYWKVEGKTPGLPVDLEIGYVPPSTRGQYPGLY 641

Query: 574  LFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIH 633
            LF    + +RPVR + L  E+     ++GPFEQV+M I         + N    TH E  
Sbjct: 642  LFGGHSRMLRPVRYLPLDKED-----IVGPFEQVYMNIAVTP--QEIQNNVH--THVEFT 692

Query: 634  PTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIV 693
            PT +LS++ANLTP+SD NQSPRNMYQCQM KQTMG    AL  R+D KLY LQT QTPIV
Sbjct: 693  PTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQTGQTPIV 752

Query: 694  RTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLS 753
            + N Y  YG+D +P G NA+VAV++YTGYDM+DAMI+NKS+ +RG  +G +Y+TE +DL+
Sbjct: 753  KANLYDDYGMDNFPNGFNAVVAVISYTGYDMDDAMIINKSADERGFGYGTMYKTEKVDLA 812

Query: 754  DDGNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTN 811
             + ++ D   + F    D   K     +D DGLPY+G  +  G+P C+ +D T N  +  
Sbjct: 813  LNRSRGDPITQHFGFGNDEWPKEWLEKLDEDGLPYIGTYVEEGDPICAYFDDTLNKTKIK 872

Query: 812  SRKGSESVFVDYVAV--DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWP 869
            +   SE  +++ V +  D  N     Q  +I++R  R P IGDKFSSRHGQKGVCS+ WP
Sbjct: 873  TYHSSEPAYIEEVNLIGDESNKFQELQTVSIKYRIRRLPQIGDKFSSRHGQKGVCSRKWP 932

Query: 870  DIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKT 929
             IDMPFS  TG++PD+IINPHAFPSRMTI M +ES+A K G+LHG   D+TP+  S    
Sbjct: 933  TIDMPFSE-TGIQPDIIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPWIFS---- 987

Query: 930  NGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMV 989
                   E  +  D  G+ L   G+NYHG E +YSG  G EL  +I++G VYYQRLRHMV
Sbjct: 988  -------EDDTPADYFGDQLAKAGYNYHGNEPMYSGATGEELRADIYVGVVYYQRLRHMV 1040

Query: 990  SDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHV 1049
            +DKFQVRSTG ++ +T QP+KGRKR GGIR GEMERD+L+ HG ++LL DRL   SDY  
Sbjct: 1041 NDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIGHGTSFLLQDRLLNSSDYTQ 1100

Query: 1050 ADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHAC----------------- 1092
            A VC  CGS+LT       ++++  IG +        V C  C                 
Sbjct: 1101 ASVCRECGSILTT------QQSVPRIGSI------STVCCRRCSMRFEDAKKLLTKSEDG 1148

Query: 1093 --------------QTSK---GME--TVAMPYVFRYLAAELAAMNIKI 1121
                          Q +K   G E  TVA+P+V +YL +EL+AM I++
Sbjct: 1149 ESIYIDDSQIWEDGQGNKFVGGNETTTVAIPFVLKYLDSELSAMGIRL 1196


>gi|281210835|gb|EFA85001.1| RNA polymerase I [Polysphondylium pallidum PN500]
          Length = 1109

 Score =  868 bits (2243), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/1171 (41%), Positives = 693/1171 (59%), Gaps = 120/1171 (10%)

Query: 10   EPLRELVRHHIESFDYMLDEGLS------------------------------------- 32
            E LR+LV  HI+S+D+  ++ LS                                     
Sbjct: 3    EELRQLVTPHIDSYDFFAEKALSIIVAGLPPVYINNRAENADSTQKHWRLKFKDVTISKP 62

Query: 33   ------EMF-DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN--FGQFPVMLKTRRC 83
                  ++F    RQ+  SY+  ++  V        S    E +N   G  PVM+ + RC
Sbjct: 63   IKSDNRQLFPTESRQSGTSYSAPMVGTVAL-LKSPTSDEEHETYNVQLGNIPVMVNSSRC 121

Query: 84   HLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYT 143
            HL+G  S +LV   EE  E+GGYFI+NG E+V R ++  K N+P+++ R  + +R  GYT
Sbjct: 122  HLRGLTSAQLVKNHEEELEVGGYFIINGNEKVMRMLVANKANHPIALTRQGWTNRGPGYT 181

Query: 144  DKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFN 203
               V +R VR D+SS+T  L+Y+ +G +   F+ + +EY +PV ++LKALVDT D EIF 
Sbjct: 182  KFGVTLRSVRPDRSSLTNNLHYISDGQITFRFYFRRQEYFIPVTLLLKALVDTTDKEIFT 241

Query: 204  HLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQ 263
             +           +G   +  +++RV++ L E +   L T+ + L +IG  ++   +   
Sbjct: 242  QIV----------QGDFENTFLTDRVELTLREQKVKGLNTKDEILDYIGSRYRHKANLPD 291

Query: 264  SESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILL 323
            S +   +AE +I ++  VHL D  DKFN+LI M+QKL+++V   +  DN D+    E+LL
Sbjct: 292  SFTNQQIAEYMIDNFFLVHLPDYRDKFNILIVMIQKLYAVVQGKNGCDNIDATSFHEVLL 351

Query: 324  PGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIE 383
            P         E+L ++L   + +    I  N +K    +LA  KK  ++  S  IG    
Sbjct: 352  P---------ERLTEYLEVSRAMYLKAI--NAQKTINEDLA-FKKAFDR--SLNIGEKFN 397

Query: 384  TMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLP 443
              L TG L + +GLDLQQ +G+ + A++LNF+R+IS FR++HRGA FA ++TTS+RKL+P
Sbjct: 398  YFLATGNLVSSSGLDLQQTSGFAIIADKLNFIRYISHFRSIHRGAFFATMKTTSIRKLMP 457

Query: 444  ESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP 503
            ES+GFLCPVHTPDG PCGLLNH+++ C +          ++  ++  S L +  GV  I 
Sbjct: 458  ESFGFLCPVHTPDGAPCGLLNHLSANCIITKDPSQDEKSKEGVRLLPSFL-MAHGVTSI- 515

Query: 504  SLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSA-ASVIPDDLEVGYVP 562
                +  +  P  L V+L+G+++G I     + +V  LR LK +     +P  +EV Y P
Sbjct: 516  ---DVTTNFQPNSLPVMLNGKLIGRINDGLAQDLVDLLRYLKSTGDEKAVPQTMEVAYAP 572

Query: 563  --LSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDG 619
               S GG YPG++LFT+  +F+R V N+     +S   ELIGP EQ++M I   P+    
Sbjct: 573  KEQSKGGQYPGIFLFTTGARFMRTVINL-----KSGKNELIGPQEQLYMNISIMPEE--- 624

Query: 620  GRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRAD 679
              R++   TH E+ PT M SV ANLTP+SD+NQSPRNMYQCQMAKQTMG  + +  +R D
Sbjct: 625  -VRDS--TTHCELSPTAMFSVEANLTPFSDYNQSPRNMYQCQMAKQTMGTPLHSYAYRTD 681

Query: 680  QKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGM 739
             KLY +Q  Q PIV T   +KY I++YP G NA++AV++ TGYDMEDAMI+NKS+ +RG 
Sbjct: 682  NKLYKVQNIQRPIVATENQSKYRINDYPHGCNAVIAVVSNTGYDMEDAMIINKSAFERGF 741

Query: 740  CHGQIYQTETIDLSDDGNKVDRGQ-KLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYC 798
             HG +Y+ E +D+ +  ++++ G+  + R N  + +L   ID DGLPY+G++I PGEPY 
Sbjct: 742  GHGSVYKNEFVDIDEGKSRLEMGKTSISRPNYTSDNLDQWIDRDGLPYIGRLIKPGEPYY 801

Query: 799  SIYDKTTNSWRTNSRKGSESVFVDYVAV----DMKNSKNLPQKANIRFRHTRNPIIGDKF 854
            +++    N   T + KG E  +++ + +        +  +  K  ++ R  RNP+IGDKF
Sbjct: 802  TVFSTIENKQVTKNYKGKEDAWIEEIMILGGSTQVRASTMITKFVVKLRFDRNPVIGDKF 861

Query: 855  SSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHG 914
            SSRHGQKGV SQLWP+I+MPF+  +G++PD+IINP+AFPSRMTI ML+E +AAK G++HG
Sbjct: 862  SSRHGQKGVLSQLWPEINMPFTE-SGLKPDVIINPNAFPSRMTIGMLVEILAAKAGAIHG 920

Query: 915  KFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCE 974
            KF DAT F             +E  S V+  GE L+  GFNY+G E +YSG  G E    
Sbjct: 921  KFQDATAFR-----------FNEKNSAVEFFGEQLKQAGFNYYGNEPMYSGTTGEEFHAN 969

Query: 975  IFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAA 1034
            IF G  YYQRLRHMV DK+QVR+TG ++ ITRQPIKGRK GGGIRFGEMERDSLLAHG +
Sbjct: 970  IFFGICYYQRLRHMVKDKYQVRATGRVNNITRQPIKGRKVGGGIRFGEMERDSLLAHGTS 1029

Query: 1035 YLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQT 1094
            + L+DRL   SDY  A VC  CGS    T +  QK    +             TC  C+T
Sbjct: 1030 FCLNDRLMKSSDYCKATVCKQCGS---TTSVAIQKSNYSQF---------TSSTCITCKT 1077

Query: 1095 SKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
             + +  +A+PYVF YL AELA++NI + LQ+
Sbjct: 1078 DEHLTNIALPYVFTYLIAELASVNISLKLQI 1108


>gi|212533185|ref|XP_002146749.1| DNA-directed RNA polymerase I subunit beta (Rpa2), putative
            [Talaromyces marneffei ATCC 18224]
 gi|210072113|gb|EEA26202.1| DNA-directed RNA polymerase I subunit beta (Rpa2), putative
            [Talaromyces marneffei ATCC 18224]
          Length = 1261

 Score =  867 bits (2241), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 469/1056 (44%), Positives = 664/1056 (62%), Gaps = 79/1056 (7%)

Query: 38   CRQAKISYTGKLMADVEFQYLDA-GSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
            CR+   +Y G+L A +++Q  +      VRE    GQ P+ML++ RCHL+    Q+LV  
Sbjct: 135  CRERHATYRGRLRARLQYQVNNGEWRESVRE---LGQVPLMLRSNRCHLESFSPQELVDH 191

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
            KEE+ E+GGYFI+NG E++ R +I+PK+N+PM++ R SF+ R  G+T   V IR  R DQ
Sbjct: 192  KEESEELGGYFIVNGNEKLIRMLIMPKRNFPMAINRPSFQKRGVGFTTFGVQIRSARPDQ 251

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
            ++ T  L+YL +G+V   F  + +EYL+PV ++LKALV+TND EIF  +           
Sbjct: 252  TTQTNVLHYLSDGNVTFRFSWRKQEYLVPVMMILKALVETNDREIFEGIV-----GNASS 306

Query: 217  KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
            KG+  +  V++RV+++L       + +R     ++G+ F+PV+    + ++       +R
Sbjct: 307  KGSANT-FVTDRVELLLRTFHGYKIWSRSDARAYLGKKFRPVLFAPATWTHEECGTEFLR 365

Query: 277  DYIFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
              +  HL + N       DKF L++FM++KL+S V     SDNPD++ NQEI+L G++  
Sbjct: 366  KIVLPHLGNQNVTTTQDYDKFKLILFMIRKLYSFVAGDCASDNPDAVSNQEIMLGGYVYG 425

Query: 330  IYLKEKLEDWLRKGKKLIQDEIENNGK-KFD--FFNLANIKKVMEKNPSKQIGTSIETML 386
            + LKE+LE+WL    +L++D     G  KF    F    I KV+++  ++ +G ++E  L
Sbjct: 426  MLLKERLEEWLLSFGRLLRDWSYKGGNLKFTDPMFEKDFISKVIKRT-NENLGGALEYFL 484

Query: 387  KTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESW 446
             TG L + TGLD+QQ +G+TV AE++NF RFIS FR VHRG  FA L+TT+VRKLLPESW
Sbjct: 485  STGNLVSPTGLDMQQASGFTVVAEKINFYRFISHFRMVHRGTFFAQLKTTTVRKLLPESW 544

Query: 447  GFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS-ILRVLIGVGM-IPS 504
            GF+CPVHTPDG PCGLLNH+   C V++           S +  + I RVL  +G+   S
Sbjct: 545  GFMCPVHTPDGSPCGLLNHLAHKCLVST-----------SDLDVAHIPRVLAQLGIKTES 593

Query: 505  LPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS 564
              ++ +S     + V L+GRV+G     + + +   LR  KV     IP +LE+GY+P  
Sbjct: 594  SAEVTES-----VCVQLNGRVIGYCSPKQAKMIHDTLRFWKVEGTHGIPKELEIGYIPNM 648

Query: 565  LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNA 624
             GG YPG+Y+ + P +  RPV+ ++L       ++ +GPFEQ FMEI C +      R+ 
Sbjct: 649  QGGQYPGIYMSSQPARMYRPVKYLAL-----DKLDYVGPFEQPFMEIACLEEDI---RSG 700

Query: 625  FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
              +TH E  PT M S++AN+TP+SD+NQSPRNMYQCQM+KQTMG    ++ FR D K+Y 
Sbjct: 701  L-STHIEFTPTNMFSIIANMTPFSDNNQSPRNMYQCQMSKQTMGTPGTSIAFRTDNKMYR 759

Query: 685  LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI 744
            LQT QTPIVR+  Y +YG+D +P G NAIVA+L+Y+ YDM+DAMI+NKSS +RG  HG +
Sbjct: 760  LQTGQTPIVRSPLYNEYGLDNFPNGCNAIVAILSYSAYDMDDAMIINKSSHERGFGHGTV 819

Query: 745  YQTETIDLSDDGNKVDRGQ----KLFRRNKDAK---SLHSVIDSDGLPYVGQMIHPGE-- 795
            Y+T+  +L D  ++ ++ +    KLF     A+      + +D DGLP+ G  +  G   
Sbjct: 820  YKTKFYNLDDKDSRRNKSKREISKLFGFAPGAEIKAEWRTTLDEDGLPHPGVKVKEGSYV 879

Query: 796  --PYCSIYDKTTNSW-----RTN--SRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHT 845
               Y   YD  ++S+     +T+    K +E  ++D V +    + N P Q  ++++R  
Sbjct: 880  AAWYNVRYDAGSDSYVNVDGQTHFLKYKDAEEGYIDTVRLVGNENGNEPLQAISVKYRVP 939

Query: 846  RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
            R PIIGDKFSSRHGQKGVCSQLWP IDMPFS  +G+ PDLIINPHAFPSRMTIA ++ES+
Sbjct: 940  RKPIIGDKFSSRHGQKGVCSQLWPAIDMPFS-ESGIMPDLIINPHAFPSRMTIAQIIESM 998

Query: 906  AAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSG 965
            A K G+LHG  +D TPF             +E  +  D  G  LR  G+NYHG E +YSG
Sbjct: 999  AGKAGALHGHPVDCTPFQ-----------FNEENTAADYFGHQLRKAGYNYHGNEPMYSG 1047

Query: 966  VYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMER 1025
            + G E   +I++G V+YQRLRHMV+DKFQVR+TG ++ +T QP+KGR +GGGIR GEMER
Sbjct: 1048 ITGKEFAADIYLGVVHYQRLRHMVNDKFQVRTTGPVNSVTGQPVKGRSKGGGIRVGEMER 1107

Query: 1026 DSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLT 1061
            DSLLAHG A+LL DRL  CSD   A +C  CGS L+
Sbjct: 1108 DSLLAHGCAFLLQDRLMNCSDSTRAWICRDCGSFLS 1143


>gi|393216038|gb|EJD01529.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Fomitiporia mediterranea MF3/22]
          Length = 1230

 Score =  867 bits (2241), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/1120 (42%), Positives = 676/1120 (60%), Gaps = 112/1120 (10%)

Query: 72   GQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMV 131
            G  P+M+++ RC+++   S +LV+  EE  E GGYFI+NG ER+ R +I+ ++++ +++ 
Sbjct: 156  GLVPIMVRSVRCNIRNLSSSELVAKHEEPEEFGGYFIINGNERLIRYLIVSRRHHVIALS 215

Query: 132  RSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLK 191
            R SF+ R   YT  AV IRCVR DQ++VT  L+YL NG+    F  + +EY++PV ++LK
Sbjct: 216  RPSFQKRGPSYTPYAVQIRCVRPDQTAVTNSLHYLSNGNAMFRFSWRKQEYVIPVMLILK 275

Query: 192  ALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHI 251
            ALV  +D EIF  +     + Y+       +  +++RV+++L   ++  L T  QCL+ +
Sbjct: 276  ALVGASDKEIFEGIIM---QDYE-------NTFLTDRVELLLRSFKNYKLYTGEQCLEFL 325

Query: 252  GEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSD 311
            G+ F+ V+   +  +  A+   ++R +I VHL D  DKF +L+FML+KL+S V+ +S SD
Sbjct: 326  GDKFRVVLGQPEDWNNTALGVWLVRKFILVHLEDPRDKFRMLLFMLRKLYSSVNSSSCSD 385

Query: 312  NPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVME 371
            NPDS Q+QE+LLPG L  + +KE++E+ L   +  I  ++    K  DFF+     K + 
Sbjct: 386  NPDSPQHQEVLLPGFLYGMIIKERMEECLNALRAQIAHDVRRGDKAVDFFDEKYFMKAVS 445

Query: 372  KNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFA 431
            +  +  IG  +   L TG L + TGLDLQQ AG+T+ AE+LN+ R+IS FR +HRGA FA
Sbjct: 446  R-VNFDIGARLANFLATGNLVSPTGLDLQQAAGFTIVAEKLNWYRYISHFRCIHRGAFFA 504

Query: 432  GLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS 491
             L+TT+VRKLLPE+WGFLCPVHTPDG PCGLLNH++ +CR+ +   +  ++ +       
Sbjct: 505  ELKTTTVRKLLPEAWGFLCPVHTPDGSPCGLLNHLSRSCRIVTAPLAVAHLTN------- 557

Query: 492  ILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV 551
               +L+  GM       +       ++V LDGR++G    + ++++   LR  K      
Sbjct: 558  ---LLLSNGMTSVHAPSINGKRHRNVAVQLDGRMIGWASPALVKQLATSLRVWKTEGRYN 614

Query: 552  IPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEI 611
            +P DLE+G VP+S GG YPGLYLF+S  + +RPV+ + L  ++ Q    IG FEQV+M+I
Sbjct: 615  VPLDLEIGLVPISQGGQYPGLYLFSSRSRMMRPVKYV-LNGKDDQ----IGSFEQVYMDI 669

Query: 612  RC-PDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFS 670
               P+  + G      +TH E  PT  LS++ANLTP+SD NQSPRN+YQCQM KQTMG  
Sbjct: 670  AVKPEEIESG-----VSTHVEHSPTNFLSILANLTPFSDFNQSPRNIYQCQMGKQTMGTP 724

Query: 671  VQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMIL 730
              A+K R D KLY LQT QTPIVR   +  Y +D +P GTNA+VAV++YTGYDMEDAMIL
Sbjct: 725  STAIKHRTDNKLYRLQTGQTPIVRPALHNTYSMDSFPNGTNAVVAVISYTGYDMEDAMIL 784

Query: 731  NKSSVDRGMCHGQIYQTETIDLSDDGNKVDR----------GQKLFRRNKDAKSLHSVID 780
            NKS+ +RG  +G +Y+++TIDL D                 G+ +  R  +      ++D
Sbjct: 785  NKSAHERGFAYGTVYKSQTIDLKDMHGASKSTTAPTLHFGFGRDIRTRGNNPHPCLEILD 844

Query: 781  SDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLP-QKAN 839
             DGLP+VG+ +   +   +  D TT   R    K  E+  +D V +   ++ +   QK N
Sbjct: 845  FDGLPHVGKKVKFNDFIAAYVDDTTGRTRFVKYKNDEAGIIDEVRLLGSDAGDTELQKIN 904

Query: 840  IRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIA 899
            I FR TR+P+IGDKFSSRHGQKGVCSQ WP IDMPFS  +G++PD+IINPHAFPSRMTI 
Sbjct: 905  ITFRITRSPVIGDKFSSRHGQKGVCSQKWPMIDMPFSE-SGIQPDVIINPHAFPSRMTIG 963

Query: 900  MLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGV 959
            ML+ES+A K G++HG   DATPF  S           E  + V+  GE L   G+NY+G 
Sbjct: 964  MLVESMAGKAGAMHGIAQDATPFTFS-----------EEDTAVNYFGEQLLAAGYNYYGN 1012

Query: 960  EVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIR 1019
            E +YSG+ G E   +I++G V+YQRLRHMV DKFQVR+TG +D IT+QP+KGRK+ GGIR
Sbjct: 1013 EPMYSGITGQEFAADIYLGVVFYQRLRHMVLDKFQVRTTGPVDPITQQPVKGRKKAGGIR 1072

Query: 1020 FGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLP 1079
            FGEMERD+L+AHG ++LL DRL  CSDY  A VC  CGS+++  +   Q  +     GL 
Sbjct: 1073 FGEMERDALIAHGTSFLLQDRLMNCSDYSTAWVCRTCGSLISLGYEDVQLGSDSLRAGL- 1131

Query: 1080 PARAPKKVTCHACQ------------------------------TSKGMETVAM------ 1103
                P    C AC+                              T  G+    +      
Sbjct: 1132 --SQPGGEYCRACRAASEEREERERAALANNININININNSNPTTQNGVHATGVRVALPR 1189

Query: 1104 ------------------PYVFRYLAAELAAMNIKITLQL 1125
                              PYVFRYL AELA+M I ++L++
Sbjct: 1190 GNVLGGTKAGGDLDVVAVPYVFRYLCAELASMGIAVSLEV 1229


>gi|296803847|ref|XP_002842776.1| DNA-directed RNA polymerase I subunit RPA2 [Arthroderma otae CBS
            113480]
 gi|238846126|gb|EEQ35788.1| DNA-directed RNA polymerase I subunit RPA2 [Arthroderma otae CBS
            113480]
          Length = 1243

 Score =  867 bits (2241), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/1165 (42%), Positives = 683/1165 (58%), Gaps = 125/1165 (10%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDA-GSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
             CR+   +Y GKL A +E++  +      VRE    GQ P+ML++ RCHL+ A   +LV 
Sbjct: 126  ECRERHATYRGKLRARLEYRVNNGEWKESVRE---LGQVPIMLRSNRCHLEKATPSQLVE 182

Query: 96   LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
             KEE+ E+GGYF++NG E++ R +I+ K+N+P +++R+SF+ R   YT   + IR VR D
Sbjct: 183  RKEESEELGGYFVVNGNEKLIRMLIVGKRNFPTAIIRNSFQKRGSAYTKFGIQIRSVRPD 242

Query: 156  QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
            Q+S T  L+YL +G+V L F  +  EYL+PV +VLKAL++TND EIF  L        ++
Sbjct: 243  QTSQTNVLHYLSDGNVTLRFSWRKNEYLVPVMMVLKALIETNDREIFERLVG------RE 296

Query: 216  EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
            +   + +  V++RV+++L   +   + +R +C  ++G  F+ V+   +      V    +
Sbjct: 297  DSLGIENTFVTDRVELLLRTYKAYGVHSRSKCRAYLGSKFRFVLGMPEDVPDEDVGTEFL 356

Query: 276  RDYIFVHLND-------NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
            R  +  HL +       +NDKFN+++FM++KL++LV      DNPD++ NQE+LL G+L 
Sbjct: 357  RKIVLPHLGNQNVTESQDNDKFNMILFMIRKLYTLVAGDCAPDNPDAISNQEVLLGGYLY 416

Query: 329  TIYLKEKLEDWLRKGKKLIQD-EIENNGKKFD--FFNLANIKKVMEKNPSKQIGTSIETM 385
             + LKE+LE+WL+    +++D  + N   KF    F    + KV+ +  ++ IG ++E  
Sbjct: 417  GMLLKERLEEWLKSVGPIVRDWRMRNQDTKFTDPKFEREFLAKVIGRT-NENIGGALEYF 475

Query: 386  LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
            L TG L + TGLDLQQ +GYTV AE++NF RFIS FR +HRG+ FA L+TT+VRKLLPES
Sbjct: 476  LSTGNLVSPTGLDLQQPSGYTVMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPES 535

Query: 446  WGFLCPVHTPDGEPCGLLNHMTSTCRVA-SYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
            WGFLCPVHTPDG PCGLLNH+   C ++ S  D  G           +  VL G+G+   
Sbjct: 536  WGFLCPVHTPDGSPCGLLNHLAHKCLISTSNLDVSG-----------VPGVLAGLGVTSE 584

Query: 505  LPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS 564
                 +   P    V L+G+++G     +   +   LR  KV     IP +LE+GYVP S
Sbjct: 585  SSCSTEESIP----VQLNGKILGYCTPKQSRAIADTLRYWKVQGHKHIPVELEIGYVPSS 640

Query: 565  LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNA 624
             GG YPG+Y+F+   +  RPVR + L       ++ +GPFEQ +MEI C        RN 
Sbjct: 641  SGGQYPGVYMFSEAARMYRPVRYLPL-----DKLDYVGPFEQPYMEIACIASDI---RNG 692

Query: 625  FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
              +TH E  PT +LS++AN+TP+SD NQSPRNMYQCQM KQ MG    A+ +R D KLY 
Sbjct: 693  I-STHIEFDPTHILSILANMTPFSDFNQSPRNMYQCQMGKQAMGTPGTAIDYRTDNKLYR 751

Query: 685  LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI 744
            LQT QTP+VR   Y  YG+D +P G NA+VAV++YTGYDM+DAMI+NKSS +RG  +G I
Sbjct: 752  LQTGQTPVVRPPLYNAYGLDNFPNGMNAVVAVISYTGYDMDDAMIINKSSHERGFGYGTI 811

Query: 745  YQTETIDLSDDGNKVDRGQKLFRRNKD-----------AKSLHSVIDSDGLPYVGQMIHP 793
            Y+T+   L D   K  RG+   +R+                  + +D DGLP++G  +  
Sbjct: 812  YKTKVYALDD---KESRGRGASKRSITKLFGFAPGGLIKAEWKAQLDEDGLPHIGAKVSE 868

Query: 794  GE----PYCSIYDKTTNSWRTNSR-------KGSESVFVDYVAVDMKNSKN-LPQKANIR 841
            G      +   YD  T+++    +       K  E  +VD V +    + N + Q  +I+
Sbjct: 869  GSLVGAWHTVQYDPATDTYVNVDKQTHFLKYKDGEEGYVDSVRILGAETGNEVCQAVSIK 928

Query: 842  FRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAML 901
            +R  R P+IGDKFSSRHGQKGV SQLWP  DMPFS  +G++PD+IINPHAFPSRMTI M 
Sbjct: 929  YRVPRRPVIGDKFSSRHGQKGVLSQLWPSTDMPFS-ESGIQPDVIINPHAFPSRMTIGMF 987

Query: 902  LESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEV 961
            +ES+A K GSLHG   D+TPF  S + T GD             G+ L+  G+N+HG E 
Sbjct: 988  VESLAGKAGSLHGLAQDSTPFQFSEEDTAGDY-----------FGKQLQKAGYNFHGNEP 1036

Query: 962  LYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFG 1021
            +YSG+ G E   +I+IG VYYQRLRHMV+DKFQVR+TG ++ +T QP+KGR +GGGIR G
Sbjct: 1037 MYSGITGREFAADIYIGVVYYQRLRHMVNDKFQVRTTGPVNALTGQPVKGRAKGGGIRVG 1096

Query: 1022 EMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGS-----VLTATFIHPQKRAIREIG 1076
            EMERD+LLAHGAA+LL DRL  CSD   A +C  CGS     V  +  + P K    E  
Sbjct: 1097 EMERDALLAHGAAFLLQDRLMNCSDSQRAWICRTCGSFISTQVAVSQLLSPHKNPAMEAV 1156

Query: 1077 GLPPARAPKK--------------VTCHACQTSK--------------------GMET-- 1100
                A A  K              V C  C                        G +T  
Sbjct: 1157 VQSTADAIAKPLSGVSALGGLAGIVRCRRCAREAVFDDPRAEVWEDGSGKRYVGGSDTTV 1216

Query: 1101 VAMPYVFRYLAAELAAMNIKITLQL 1125
            VA+P V +YL  ELAAM +K+   +
Sbjct: 1217 VAVPGVLKYLDVELAAMGVKMRFHV 1241


>gi|118396434|ref|XP_001030557.1| DNA-directed RNA polymerase, beta subunit family protein [Tetrahymena
            thermophila]
 gi|89284864|gb|EAR82894.1| DNA-directed RNA polymerase, beta subunit family protein [Tetrahymena
            thermophila SB210]
          Length = 1178

 Score =  866 bits (2237), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/1134 (41%), Positives = 686/1134 (60%), Gaps = 83/1134 (7%)

Query: 28   DEGLSE----MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN--FGQFPVMLKTR 81
            D G++E    M + CR  + +Y   L A V  + +D G P   E  N   G  P+++++ 
Sbjct: 91   DSGVAEDNKLMPEECRIGRKTYGAPLFAKVA-RSIDGGKP---ESINIRLGDIPIIVRSD 146

Query: 82   RCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREG 141
             CHL     ++LV   E+  E GGYFI+NG E++ R +IL K+NYP++ +R+ + +R   
Sbjct: 147  HCHLAKMTPKELVKAHEDCNEFGGYFIVNGNEKIVRMLILQKRNYPIAFIRAGYVNRGPN 206

Query: 142  YTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEI 201
            YT  AV ++CVR+D  S T+ L+Y+ +GSV L    + +E+L+P  ++LKAL D +DL+I
Sbjct: 207  YTPFAVQMKCVREDLYSKTITLHYVSDGSVFLRILHRKQEFLIPAIVILKALADISDLQI 266

Query: 202  FNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDG 261
            +N L           KG      +S+RV++++   + +SL T+ +CL H+G++F+ V++ 
Sbjct: 267  YNKLV----------KGQSSKSAISDRVEVLIRGSKAMSLNTKEECLAHLGKNFRVVLNI 316

Query: 262  LQSE-SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQE 320
               E +   V E  + + I VHLN+N DK N +  M+ KL++LV      DN DSLQNQE
Sbjct: 317  TNPEITDKQVGEIFMNENICVHLNNNIDKLNTICVMISKLYALVSDEICPDNLDSLQNQE 376

Query: 321  ILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGT 380
            +LLPGHL  + L+EKLE+ L   +  +  +     +     ++A +KK +E   S  IG 
Sbjct: 377  VLLPGHLYMMILREKLEEMLLGIRAKVFKDGSRPEEAIRIPHIAYLKKAIEFQGS--IGN 434

Query: 381  SIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRK 440
             IE  L TG L +QTGLDL Q  G+T+ A++LN +RF+S FR+VHRGA F  ++TT+VRK
Sbjct: 435  KIEYFLSTGNLKSQTGLDLMQAKGFTIIADKLNNMRFLSHFRSVHRGAYFTEMKTTTVRK 494

Query: 441  LLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVG 500
            LLPE+WGF+CPVHTPDG PCGLLNH++ +C+  +     GNI        +++ +   +G
Sbjct: 495  LLPENWGFICPVHTPDGGPCGLLNHISQSCKPLTRPGYDGNIH------FNLVTLCTEIG 548

Query: 501  MIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKV--SAASVIPDDLEV 558
            M P +  L    PP  ++++LDGRV+G I S   +     L+ LK+      +IP DLE+
Sbjct: 549  MNPIVNDLSIVFPPTSVTIMLDGRVIGYIESKNAQTFCQSLKYLKIMQDPTRLIPADLEI 608

Query: 559  GYVP---LSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPD 615
            GYVP   L     +PG++L T+  +FVRPV+++ L +     +E I PFEQV + I C +
Sbjct: 609  GYVPKLNLEKQNIFPGIFLHTNEARFVRPVKHLKLNA-----LEWITPFEQVHLSIACIE 663

Query: 616  GGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALK 675
                  RN     ++E+ P+ +LS++ +  P+ ++NQSPRNMYQCQMAKQTMG S+    
Sbjct: 664  ED---IRND--TEYQELSPSYILSILPSQIPFLNYNQSPRNMYQCQMAKQTMGTSMHNFP 718

Query: 676  FRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSV 735
            +R D ++Y L   Q P+V+      YG+ +YP+GTNAIVAV++YTGYDMEDAMILNKSS 
Sbjct: 719  YRFDNRIYRLLNGQIPMVKGMDPESYGLSDYPSGTNAIVAVISYTGYDMEDAMILNKSSY 778

Query: 736  DRGMCHGQIYQTETIDLSDDGNKVDRGQKLFR--RNKDAKSLHSVIDSDGLPYVGQMIHP 793
            +RG  HG +Y+  + D+++   + +   K+    +N D   +   ++ DG+P +G +I  
Sbjct: 779  ERGFGHGCVYKNYSYDVAELNKEKNSKFKMLNEVKNIDKSQIAEGLEGDGIPAIGSVIKK 838

Query: 794  GEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDK 853
            G     IYD   N+ +T   K SE   +D +A+ + + K    +   R R  RNPIIGDK
Sbjct: 839  GTAVFQIYDTQKNAMKTFYHKDSELGRLDGIAL-VHDEKTKEPRVEYRIRIPRNPIIGDK 897

Query: 854  FSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIA-------------- 899
            FSSRHGQKGV S LWP IDMPF+  +G+ PD+IINPHAFPSRMTI               
Sbjct: 898  FSSRHGQKGVLSVLWPHIDMPFTE-SGITPDVIINPHAFPSRMTIGKFTLYSRRLTNQLN 956

Query: 900  -----MLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGF 954
                 ML+ES+A K G+L+G  ++  PF N            +   +V+  G+ L++ G+
Sbjct: 957  FNKKGMLIESMAGKSGALNGNILETQPFQNY-----------QDDDIVNYFGKQLQSHGY 1005

Query: 955  NYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKR 1014
            NY+G EV+YSG YG  +  +I++G VYYQRLRHMVSDK Q RSTG +D +T+QPIKGRKR
Sbjct: 1006 NYYGNEVMYSGTYGCMMKVDIYMGIVYYQRLRHMVSDKAQARSTGPVDMLTQQPIKGRKR 1065

Query: 1015 GGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQ---KRA 1071
            GGGIR GEMERD+LL+HG ++ +HDR   CSDY    VC+ CGS L +T++H       A
Sbjct: 1066 GGGIRMGEMERDALLSHGISFCMHDRFLNCSDYSEGYVCNSCGS-LVSTYLHTNLMSGEA 1124

Query: 1072 IREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
            I             K  C  CQ ++    V +P+V RYL  ELAAMNIK+  +L
Sbjct: 1125 IDSFYNYNKGVQKSKPKCRKCQNAE-CSKVVIPFVLRYLTNELAAMNIKLAFKL 1177


>gi|326474430|gb|EGD98439.1| DNA-directed RNA polymerase I [Trichophyton tonsurans CBS 112818]
          Length = 1244

 Score =  866 bits (2237), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1170 (42%), Positives = 686/1170 (58%), Gaps = 135/1170 (11%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDA-GSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
             CR+   +Y GKL A +E++  +      VRE    GQ P+M+++ RCHL+ A   +LV 
Sbjct: 127  ECRERHATYRGKLRARLEYRVNNGEWKESVRE---LGQVPIMIRSNRCHLEKATPSQLVD 183

Query: 96   LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
             KEE+ E+GGYFI+NG E++ R +I+ K+N+P +++R+SF+ R   YT   V +R VR D
Sbjct: 184  HKEESEELGGYFIVNGNEKLIRMLIVGKRNFPTAIIRNSFQKRGSAYTKFGVQLRSVRPD 243

Query: 156  QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
            Q+S T  L+YL +G+V   F  +  EYL+PV ++LKAL++TND EIF  L          
Sbjct: 244  QTSQTNVLHYLNDGNVTFRFSWRKNEYLVPVMMILKALIETNDREIFERLV--------G 295

Query: 216  EKGAVG--SPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAET 273
             +G++G  +  V++RV+++L   +   + +R +C  ++G  F+ V+   +      V   
Sbjct: 296  REGSLGIENTFVTDRVELLLRTYKAYGVHSRSKCRAYLGSKFRFVLGMPEDIPEEDVGTE 355

Query: 274  VIRDYIFVHLND-------NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGH 326
             +R  +  HL +       +NDKFN+++FM++KL++LV      DNPD++ NQE+LL G+
Sbjct: 356  FLRKIVLPHLGNQNVTETQDNDKFNMILFMIRKLYNLVAGDCAPDNPDAVSNQEVLLGGY 415

Query: 327  LITIYLKEKLEDWLRKGKKLIQD-EIENNGKKFD--FFNLANIKKVMEKNPSKQIGTSIE 383
            L  + LKE+LE+WL+    +++D  + N   KF    F    + +++ +  ++ IG ++E
Sbjct: 416  LYGMLLKERLEEWLKSVGPMVRDWRMRNQDAKFTDPKFEREFLTRIIGRT-NENIGGAME 474

Query: 384  TMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLP 443
              L TG L + TGLDLQQ +GYTV AE++NF RFIS FR +HRG+ FA L+TT+VRKLLP
Sbjct: 475  YFLSTGNLVSPTGLDLQQPSGYTVMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLP 534

Query: 444  ESWGFLCPVHTPDGEPCGLLNHMTSTCRVA-SYYDSRGNIRDFSKMRTSILRVLIGVGMI 502
            ESWGFLCPVHTPDG PCGLLNH+   C ++ S  D  G           I  VL G+G+ 
Sbjct: 535  ESWGFLCPVHTPDGSPCGLLNHLAHKCLISTSNLDVSG-----------IPGVLAGLGVT 583

Query: 503  PSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVP 562
                  ++   P    V LDG+++G     +   +   LR  KV     IP +LE+GYVP
Sbjct: 584  SESSCSIEESIP----VQLDGKILGYCTPKQSRAIADTLRYWKVQGHKQIPVELEIGYVP 639

Query: 563  LSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRR 622
             S GG YPG+Y+F+   +  RPV+ + L       ++ +GPFEQ +MEI C        R
Sbjct: 640  CSNGGQYPGVYMFSEAARMYRPVKYLPL-----DKLDYVGPFEQPYMEIACVASDI---R 691

Query: 623  NAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKL 682
            N   +TH E  PT +LS++AN+TP+SD NQSPRNMYQCQM KQ MG    A+ +R D KL
Sbjct: 692  NGV-STHIEFDPTHILSILANMTPFSDFNQSPRNMYQCQMGKQAMGTPGTAIDYRTDNKL 750

Query: 683  YHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG 742
            Y LQT QTP+VR   Y  YG+D +P G NA+VAV++YTGYDM+DAMI+NKSS +RG  +G
Sbjct: 751  YRLQTGQTPVVRPPLYNAYGLDNFPNGMNAVVAVISYTGYDMDDAMIINKSSHERGFGYG 810

Query: 743  QIYQTETIDLSDDGNKVDRGQ------KLFRRNKDA---KSLHSVIDSDGLPYVGQMIHP 793
             IY+T+   L DD     RG+      KLF             + +D DGLP++G  +  
Sbjct: 811  TIYKTKIYAL-DDKESRGRGKSKRAITKLFGFAPGGLVKAEWKAQLDEDGLPHIGAKVSE 869

Query: 794  GE----PYCSIYDKTTNSWRTNSR-------KGSESVFVDYVAVDMKNSKN-LPQKANIR 841
            G      +   YD  T+++    +       K  E  F+D V V    + N + Q  +I+
Sbjct: 870  GSLVGAWHTVQYDPATDTYINVDKQTHFLKYKDGEEGFIDSVRVLGSETGNEVCQAVSIK 929

Query: 842  FRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAML 901
            +R  R P+IGDKFSSRHGQKGV SQLWP  DMPFS  +G++PD+IINPHAFPSRMTI M 
Sbjct: 930  YRVPRRPVIGDKFSSRHGQKGVLSQLWPATDMPFS-ESGIQPDVIINPHAFPSRMTIGMF 988

Query: 902  LESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEV 961
            +ES+A K GSLHG   D+TPF  S + T GD             G+ L+  G+N+HG E 
Sbjct: 989  VESLAGKAGSLHGLPQDSTPFQFSEEATAGDF-----------FGKQLQKAGYNFHGNEP 1037

Query: 962  LYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFG 1021
            +YSG+ G E   +I+IG VYYQRLRHMV+DKFQVR+TG ++ +T QP+KGR +GGGIR G
Sbjct: 1038 MYSGITGREFAADIYIGVVYYQRLRHMVNDKFQVRTTGPVNALTGQPVKGRAKGGGIRVG 1097

Query: 1022 EMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVL--------------------- 1060
            EMERD+LLAHGAA+LL DRL  CSD   A +C  CGS +                     
Sbjct: 1098 EMERDALLAHGAAFLLQDRLMNCSDSQRAWICRTCGSFISTQVAVSQLLSPHKNPAMDAV 1157

Query: 1061 ---TATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSK--------------------G 1097
               TA+ I      +  +GGL        V C  C                        G
Sbjct: 1158 VQSTASAIAKPLSGVSALGGLAGI-----VRCRRCAREAVFDDPRAEVWEDGSGKRYVGG 1212

Query: 1098 MET--VAMPYVFRYLAAELAAMNIKITLQL 1125
             +T  VA+P V +YL  ELAAM IK+  Q+
Sbjct: 1213 SDTTVVAVPGVLKYLDVELAAMGIKMRFQV 1242


>gi|323335118|gb|EGA76408.1| Rpa135p [Saccharomyces cerevisiae Vin13]
          Length = 1046

 Score =  866 bits (2237), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 471/1063 (44%), Positives = 662/1063 (62%), Gaps = 67/1063 (6%)

Query: 39   RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
            RQ   SY GKL+  +++  ++ G   + E  + G  PVML++ RCHL      +LV  KE
Sbjct: 20   RQRLTSYRGKLLLKLKWS-VNNGEENLFEVRDCGGLPVMLQSNRCHLNKMSPYELVQHKE 78

Query: 99   EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
            E+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R   Y+   + IR VR DQ+S
Sbjct: 79   ESDEIGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFANRGASYSHYGIQIRSVRPDQTS 138

Query: 159  VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKG 218
             T  L+YL +G V   F  +  EYL+PV ++LKAL  T+D EIF+ +             
Sbjct: 139  QTNVLHYLNDGQVTFRFSWRKNEYLVPVVMILKALCHTSDREIFDGII----------GN 188

Query: 219  AVGSPLVSERVKIILAEVQDL--SLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
             V    +++R++++L   +     L  R Q LQ++G+ F+ V      +S   V + V+ 
Sbjct: 189  DVKDSFLTDRLELLLRGFKKRYPHLQNRTQVLQYLGDKFRVVFQASPDQSDLEVGQEVLD 248

Query: 277  DYIFVHL--NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKE 334
              + VHL  + + DKF +L+FM++KL+SLV      DNPD+ Q+QE+LL G L  + LKE
Sbjct: 249  RIVLVHLGKDGSQDKFRMLLFMIRKLYSLVAGECSPDNPDATQHQEVLLGGFLYGMILKE 308

Query: 335  KLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQ 394
            K++++L+     ++ +I N G   +F +   + +V+ +  ++ IG+ ++  L TG L +Q
Sbjct: 309  KIDEYLQNIIAQVRMDI-NRGMAINFKDKRYMSRVLMR-VNENIGSKMQYFLSTGNLVSQ 366

Query: 395  TGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHT 454
            +GLDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPVHT
Sbjct: 367  SGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHT 426

Query: 455  PDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPP 514
            PDG PCGLLNH    CR+++         D S+    I  +L  +G+ P+      +  P
Sbjct: 427  PDGSPCGLLNHFAHKCRIST------QQSDVSR----IPSILYSLGVAPASHTF--AAGP 474

Query: 515  AVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV-IPDDLEVGYVPLSLGGAYPGLY 573
            ++  V +DG+++G +   + + +   LR  KV   +  +P DLE+GYVP S  G YPGLY
Sbjct: 475  SLCCVQIDGKIIGWVSHEQGKIIADTLRYWKVEGKTPGLPIDLEIGYVPPSTRGQYPGLY 534

Query: 574  LFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIH 633
            LF    + +RPVR + L  E+     ++GPFEQV+M I         + N    TH E  
Sbjct: 535  LFGGHSRMLRPVRYLPLDKED-----IVGPFEQVYMNIAVTP--QEIQNNVH--THVEFT 585

Query: 634  PTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIV 693
            PT +LS++ANLTP+SD NQSPRNMYQCQM KQTMG    AL  R+D KLY LQT QTPIV
Sbjct: 586  PTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQTGQTPIV 645

Query: 694  RTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLS 753
            + N Y  YG+D +P G NA+VAV++YTGYDM+DAMI+NKS+ +RG  +G +Y+TE +DL+
Sbjct: 646  KANLYDDYGMDNFPNGFNAVVAVISYTGYDMDDAMIINKSADERGFGYGTMYKTEKVDLA 705

Query: 754  DDGNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTN 811
             + N+ D   + F    D   K     +D DGLPY+G  +  G+P C+ +D T N  +  
Sbjct: 706  LNRNRGDPITQHFGFGNDEWPKEWLEKLDEDGLPYIGTYVEEGDPICAYFDDTLNKTKIK 765

Query: 812  SRKGSESVFVDYVAV--DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWP 869
            +   SE  +++ V +  D  N     Q  +I++R  R P IGDKFSSRHGQKGVCS+ WP
Sbjct: 766  TYHSSEPAYIEEVNLIGDESNKFQELQTVSIKYRIRRTPQIGDKFSSRHGQKGVCSRKWP 825

Query: 870  DIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKT 929
             IDMPFS  TG++PD+IINPHAFPSRMTI M +ES+A K G+LHG   D+TP+       
Sbjct: 826  TIDMPFSE-TGIQPDIIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPWI------ 878

Query: 930  NGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMV 989
                  +E  +  D  GE L   G+NYHG E +YSG  G EL  +I++G VYYQRLRHMV
Sbjct: 879  -----FNEDDTPADYFGEQLAKAGYNYHGNEPMYSGATGEELRADIYVGVVYYQRLRHMV 933

Query: 990  SDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHV 1049
            +DKFQVRSTG ++ +T QP+KGRKR GGIR GEMERD+L+ HG ++LL DRL   SDY  
Sbjct: 934  NDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIGHGTSFLLQDRLLNSSDYTQ 993

Query: 1050 ADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHAC 1092
            A VC  CGS+LT       ++++  IG +        V C  C
Sbjct: 994  ASVCRECGSILTT------QQSVPRIGSI------STVCCRRC 1024


>gi|302785610|ref|XP_002974576.1| hypothetical protein SELMODRAFT_101823 [Selaginella moellendorffii]
 gi|300157471|gb|EFJ24096.1| hypothetical protein SELMODRAFT_101823 [Selaginella moellendorffii]
          Length = 692

 Score =  865 bits (2236), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/732 (57%), Positives = 526/732 (71%), Gaps = 52/732 (7%)

Query: 404  GYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLL 463
            G++V AE+LNF RFIS FR+VHRGA FA  RTTSVRKLLPESWGFLCPVHTPDGEPCGLL
Sbjct: 2    GFSVVAEKLNFFRFISHFRSVHRGAFFARQRTTSVRKLLPESWGFLCPVHTPDGEPCGLL 61

Query: 464  NHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDG 523
             H++S C++++  D   + +D   +  +I  VL  +GM+   P L  SGPP  L+VLLDG
Sbjct: 62   THLSSLCKISTDLDQNNHPKDPKVIHRTIATVLAQLGMVSISPLLALSGPPKYLAVLLDG 121

Query: 524  RVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVR 583
             V+G +P   I + V              P DLE+GYVP +  GAYPGL+L+T+P +F+R
Sbjct: 122  CVLGYMPVGNIPQTV--------------PIDLEIGYVPCTYAGAYPGLFLYTTPSRFLR 167

Query: 584  PVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRR-NAFPATHEEIHPTGMLSVVA 642
            P                       +MEI CPDGG+ GR  +A PATH E+HPT MLSVVA
Sbjct: 168  PA----------------------YMEIACPDGGNCGRTPSAPPATHIELHPTAMLSVVA 205

Query: 643  NLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYG 702
            +LTP+SDHNQSPRNMYQCQM KQT+GF+ QALKFR D K+Y+LQ PQ+P+ R   Y KY 
Sbjct: 206  SLTPWSDHNQSPRNMYQCQMGKQTLGFASQALKFRTDHKMYNLQNPQSPVARNVNYKKYN 265

Query: 703  IDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRG 762
            +DE+P GTNA+VAVLAYTG+DMEDAMI+NKSS++RG+ HGQIY+TE +DLS    K D  
Sbjct: 266  MDEFPLGTNAVVAVLAYTGFDMEDAMIMNKSSMERGLAHGQIYKTEHVDLSLLQKKSDGI 325

Query: 763  QKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVD 822
              LF R    +++H+ +D DGLP++GQ +H G+PYCS+ +  T   + +  K +E+V +D
Sbjct: 326  VNLFSRPTGKRNIHNFLDVDGLPHIGQTMHNGDPYCSVLNTMTGDAKLHKLKAAENVVID 385

Query: 823  YVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMR 882
             V + + + ++  QK  ++FRH RNP+IGDKFSSRHGQKG+ SQLWPDIDMPFS VTGMR
Sbjct: 386  SV-IAIGHGRDPLQKIAVKFRHDRNPVIGDKFSSRHGQKGILSQLWPDIDMPFSAVTGMR 444

Query: 883  PDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSV--------KKTNGDTG 934
            PD+IINPHAFPSRMTI ML+ES+AAK G L G+++D+TPF +S         K  +G  G
Sbjct: 445  PDIIINPHAFPSRMTIGMLMESMAAKAGVLRGEYVDSTPFRSSSAALEAKDGKTGSGYKG 504

Query: 935  TDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQ 994
             D+    + E GE L   GFNYHG EV+YSG+ GTELTCEIFIG VYYQRLRHMVSDKFQ
Sbjct: 505  KDKHYPAISEFGEQLAQHGFNYHGTEVMYSGLLGTELTCEIFIGVVYYQRLRHMVSDKFQ 564

Query: 995  VRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCS 1054
            VRS G ++ +TRQP+ GRK GGGIRFGEMERDSLLAHGAAYLLHDRLHT SDYHV DVC+
Sbjct: 565  VRSLGAINPVTRQPVGGRKLGGGIRFGEMERDSLLAHGAAYLLHDRLHTSSDYHVGDVCT 624

Query: 1055 LCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAEL 1114
             CGS+L+   +  ++ A+           PKK TC  CQ++ G+  VAMP+VFRYLAAEL
Sbjct: 625  TCGSLLSTLMVPSKQPAVGA------RNKPKKATCKVCQSNAGVVKVAMPFVFRYLAAEL 678

Query: 1115 AAMNIKITLQLG 1126
            AAMN+K+TL++ 
Sbjct: 679  AAMNVKLTLKVA 690


>gi|167537729|ref|XP_001750532.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163770953|gb|EDQ84628.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1136

 Score =  865 bits (2235), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/1095 (42%), Positives = 659/1095 (60%), Gaps = 81/1095 (7%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CRQ +++Y G     V  +     +    ER+  GQ P+M+ +  C L G   ++LV  K
Sbjct: 113  CRQRRVTYKGDFYLTVNIEVEGQPNAWQVERY-VGQLPIMIMSNACRLNGLSPRELVMKK 171

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EEA EMGGYFI+NG E++ R +++P++N+P+ + R S+ +R  GY+   V +RCVR DQS
Sbjct: 172  EEAQEMGGYFIINGNEKIVRMLLMPRRNHPICLDRPSYVNRGPGYSSYGVQMRCVRPDQS 231

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            + T+ ++Y  +G+  LGF  + ++YL+P  ++L+AL   +D +IF  +           +
Sbjct: 232  AQTVVVHYKNDGTCTLGFSYRKQQYLIPAILLLRALSGVSDRQIFMDIV----------R 281

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
            G + +  + ERV+I+L +     L ++  CL ++G  F+ +++     S    A  + + 
Sbjct: 282  GDMSNSFLVERVEIMLRQYTRERLFSQQACLAYLGNLFKVILNLHPETSDVEAAHILFKR 341

Query: 278  YIFVHL--NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEK 335
             + VH+  ND   K+ +L+ ++++++SL   ++  DN DS   QE+LLPGH+   ++KE+
Sbjct: 342  VLLVHIAPNDFQAKYRVLVGLIRRVYSLAAGSTQPDNADSQMLQELLLPGHIYCAFVKEQ 401

Query: 336  LEDWLRKGKKLIQDEIENNGKKFDFFNLANIKK-VMEKNPSKQIGTSIETMLKTGRLATQ 394
            + ++L   +KL+Q ++   GK  D  N   ++  VM + P   IG+ +E  + TG L + 
Sbjct: 402  MSEYLVAMQKLVQTDLRM-GKTVDVSNTNYLQTDVMRRCPD--IGSKLEYFMSTGNLNSP 458

Query: 395  TGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHT 454
            T LD  Q  G+T+ A++LNFLR++S FR VHRGA F+ ++TT+VRKLLPE+WGFLCPVHT
Sbjct: 459  TALDQMQVTGFTIVADKLNFLRYLSHFRCVHRGAYFSQMKTTAVRKLLPEAWGFLCPVHT 518

Query: 455  PDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPP 514
            PDG PCGLLNH+   C   +         D S    S+   L+G+GMI      V   P 
Sbjct: 519  PDGAPCGLLNHLARHCLPPT------EPVDIS----SLPPTLLGLGMIA-----VSEQPH 563

Query: 515  -AVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLY 573
               L VLLDG +VG +   +  K    LR LK+     +P+ LE+ YV     G +PGLY
Sbjct: 564  FHCLDVLLDGHLVGFLALEQAPKFAEQLRILKIRDDERVPNTLEIAYVAPRAAGQFPGLY 623

Query: 574  LFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIH 633
            LF++P + +RPVRN+ + S      E +G FEQV++ +      D     +   TH E+ 
Sbjct: 624  LFSTPARLLRPVRNLRMKS-----TEFVGSFEQVYLNVAV----DPKEFVSGETTHMELT 674

Query: 634  PTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIV 693
              G LS+VA+ TP+SD NQSPRNMYQCQM KQTMG   QA+K+RAD KLY L + QTP+V
Sbjct: 675  KHGFLSIVASFTPFSDFNQSPRNMYQCQMGKQTMGVPGQAIKYRADNKLYSLNSGQTPLV 734

Query: 694  RTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLS 753
            R   Y +YG+D +P G NAIV V+AYTGYDMEDAMILNK SV+RG  H ++  T+ IDL+
Sbjct: 735  RPRAYNEYGVDNFPVGNNAIVCVIAYTGYDMEDAMILNKGSVERGFMHARVLATKVIDLT 794

Query: 754  DDGNK--VDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTN 811
            +            +  +++ A      +D+DGLP VG  I  G+   S  D +TN  RT 
Sbjct: 795  EKTKSRVCHYYFGVLPKDRSANLKMEKLDADGLPRVGAHIKEGDALYSYIDGSTNESRTE 854

Query: 812  SRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDI 871
              +G  ++              + +K  IR    RNPIIGDKF+SRHGQKG+ SQLWP  
Sbjct: 855  IYRGEPAI--------------IDRKVTIRLSINRNPIIGDKFASRHGQKGILSQLWPTA 900

Query: 872  DMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNG 931
            DMPFS  +G+ PD++ NPH FPSRMTI ML+ES+A K  +LHG   DATPF         
Sbjct: 901  DMPFSE-SGIIPDILFNPHGFPSRMTIGMLIESMAGKSAALHGVAHDATPFM-------- 951

Query: 932  DTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSD 991
                +E++  VD  GE LRT G+NYHG E +YSG+ G E   +IFIG V+YQRLRHMVSD
Sbjct: 952  ---FNENERAVDYFGEQLRTAGYNYHGHERMYSGITGEEFEVDIFIGNVFYQRLRHMVSD 1008

Query: 992  KFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVAD 1051
            KFQVR+ G ++ +TRQP+KGRK+ GGIRFGEMERD+LL HG A+LL DRL  CSD    D
Sbjct: 1009 KFQVRTQGPVNSLTRQPVKGRKKNGGIRFGEMERDALLGHGTAFLLQDRLFNCSDRSEVD 1068

Query: 1052 VCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLA 1111
            VC  CGS+L+      +K A   I         + + C  C     +  V +PYVFRYL 
Sbjct: 1069 VCRKCGSLLSP--YSSEKTAANRI---------RVLRCRGCSDGGEVVRVNLPYVFRYLT 1117

Query: 1112 AELAAMNIKITLQLG 1126
            AEL+AMNI+++L + 
Sbjct: 1118 AELSAMNIRLSLDVA 1132


>gi|154291829|ref|XP_001546494.1| hypothetical protein BC1G_14991 [Botryotinia fuckeliana B05.10]
          Length = 1207

 Score =  865 bits (2235), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 479/1143 (41%), Positives = 678/1143 (59%), Gaps = 111/1143 (9%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR+  ++Y GK+ A +E+  ++ G P    R + GQ P+ML + +CHLQ     +LV  K
Sbjct: 121  CRERHVTYRGKMSARMEYS-INNGDPKEFIR-DLGQLPLMLMSNKCHLQNNSPAQLVQKK 178

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EE+ E+GGYF++NG+E++ R +++ ++N+PM+++R SF+ R   YT+  ++IR VR DQ+
Sbjct: 179  EESEELGGYFVVNGIEKIIRLLVVNRRNFPMAIIRPSFKGRGPTYTEFGMLIRSVRPDQT 238

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            S T  L+YL +G+V   F  +  E+L+P  ++LKALV+TND EIF  L           K
Sbjct: 239  SQTNVLHYLNDGNVTFRFSWRKNEFLVPAMMILKALVETNDKEIFEGLVGA-----AGSK 293

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
            GA  +  +++RV+++L   +   L T+ +   ++GE F+ V+    + S Y V    +R 
Sbjct: 294  GAENT-FLTDRVELLLRTYKAYGLYTKSKTRAYLGEKFRIVLGVPDTMSNYDVGTEFLRK 352

Query: 278  YIFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITI 330
             + VHL + +       DKF +L+FM +KL+SLV      DNPD++QNQEILL G L  +
Sbjct: 353  IVLVHLGNTDVTEAQDKDKFKMLLFMTRKLYSLVAGDCAGDNPDAVQNQEILLGGFLFGM 412

Query: 331  YLKEKLEDWLRKGKKL-----IQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
             +KE+LEDWL    ++     ++   ENN    +F     +K     N  +Q+G ++E  
Sbjct: 413  IIKERLEDWLHTSLRMALRDYVRRSPENNFATPEFLKDFPVKICSRTN--EQVGGALEYF 470

Query: 386  LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
            + TG L + TGLDLQQ +G+TV AE++NFLRFI+ FR +HRG+ FA L+TT+VRKLLPES
Sbjct: 471  MSTGNLVSPTGLDLQQTSGFTVVAEKINFLRFIAHFRMIHRGSFFAQLKTTTVRKLLPES 530

Query: 446  WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
            WGF+CPVHTPDG PCGLLNH++  C + ++     ++    K+ + +  V  G       
Sbjct: 531  WGFMCPVHTPDGSPCGLLNHLSHKCIILTHAS---DVSALPKLLSELGVVSTG------- 580

Query: 506  PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
                 S     + V LDG+++G     +   +   LR  KV     +P +LE+GY+P S 
Sbjct: 581  ----SSSTDESVVVQLDGKIMGWCSPKQSLVIADTLRYWKVEKTHGVPTNLEIGYIPNSH 636

Query: 566  GGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAF 625
            GG YPG+YL  +P + VRPV+ + L  E+      +GP EQ FM I   +        + 
Sbjct: 637  GGQYPGIYLSAAPARMVRPVKYLPLDKED-----FVGPLEQPFMSIAVTEQ----EIESG 687

Query: 626  PATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHL 685
              TH E  PT +LS++AN+TP+SD NQSPRNMYQCQM KQ+MG    A+++R D K Y L
Sbjct: 688  EHTHVEFDPTHILSILANMTPFSDFNQSPRNMYQCQMGKQSMGTPGTAIRYRTDNKAYRL 747

Query: 686  QTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIY 745
            QT QTPIVR   + +YG D +P G N++VAV++YTGYDM+DAMI+NKS+ +RG  HG IY
Sbjct: 748  QTGQTPIVRAPLHNEYGFDNFPNGMNSVVAVISYTGYDMDDAMIINKSAHERGFGHGTIY 807

Query: 746  QTETIDLSDDGNKVDRG---QKLFRRNKDA---KSLHSVIDSDGLPYVGQMIHPGEPYCS 799
            +T+  +L ++G+K       +KLF             + ID DGLP++G+M+  G+   +
Sbjct: 808  KTKKYEL-EEGHKSRSAKNIKKLFGFAPGGLVKAEWKAAIDEDGLPFIGRMVQNGDLIAA 866

Query: 800  IYDKTTNSWRTNSR-------------KGSESVFVDYV-AVDMKNSKNLPQKANIRFRHT 845
             +   T S   N +             K +E  F++ V  +  +N     Q  +++ R  
Sbjct: 867  WH---TVSMDENGKYVNRDGQTHFEKYKETEIAFIEEVRLIGNENGIEPCQAISVKLRIP 923

Query: 846  RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
            R+P+IGDKFSSRHGQKGVCSQ WP +DMPF+  +G++PD IINPHAFPSRMTI M +ES+
Sbjct: 924  RSPVIGDKFSSRHGQKGVCSQKWPAVDMPFT-ESGIQPDTIINPHAFPSRMTIGMFVESL 982

Query: 906  AAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSG 965
            A K G+LHG   D+TPF             DE     D  G  L   G+NY+G E +YSG
Sbjct: 983  AGKAGALHGLAQDSTPFK-----------FDEEHKAGDYFGHQLMKAGYNYYGNEPMYSG 1031

Query: 966  VYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMER 1025
            + G EL  +I+IG VYYQRLRHMV+DK+QVR+TG + Q+T QPIKGRK+GGGIR GEMER
Sbjct: 1032 ITGEELHADIYIGVVYYQRLRHMVNDKYQVRTTGPVTQLTGQPIKGRKKGGGIRVGEMER 1091

Query: 1026 DSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPK 1085
            DSLLAHG A+LL DRL  CSDY  + +C  CG+ L+     P   A          +   
Sbjct: 1092 DSLLAHGTAFLLQDRLLNCSDYTKSWICKECGTFLST---QPTVSAFAS-----KKKGTG 1143

Query: 1086 KVTCHACQTS--------------KGME--------TVAMPYVFRYLAAELAAMNIKITL 1123
             V C  C TS              KG           VA+P V +YL  ELAAM IK+  
Sbjct: 1144 VVRCRKCATSASGKLGGGEVWEDGKGQRWVGGEDTTVVAVPGVLKYLDVELAAMGIKLKY 1203

Query: 1124 QLG 1126
             +G
Sbjct: 1204 NVG 1206


>gi|254582667|ref|XP_002499065.1| ZYRO0E02838p [Zygosaccharomyces rouxii]
 gi|238942639|emb|CAR30810.1| ZYRO0E02838p [Zygosaccharomyces rouxii]
          Length = 1196

 Score =  865 bits (2234), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/1127 (42%), Positives = 683/1127 (60%), Gaps = 99/1127 (8%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
             RQ   SY GKL+  + ++ ++ G     E  + G  P+ML++ RCHL      +LV  K
Sbjct: 119  ARQRLSSYKGKLVIKLRWE-VNNGEETFTEVRDCGAVPIMLQSNRCHLYNMPPSELVKHK 177

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EE+ E GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R   Y+   V IR VR DQ+
Sbjct: 178  EESDEFGGYFIINGIEKLIRMLIVQRRNHPMAIIRPSFANRGAAYSQFGVQIRSVRPDQT 237

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            S T  L+YL +G V   F  +  EYL+PV +++KAL D +D EIF+              
Sbjct: 238  SQTNVLHYLHDGQVTFRFSWRKNEYLIPVVMIIKALCDISDREIFD-------------- 283

Query: 218  GAVGSPL----VSERVKIILAEVQDL--SLTTRLQCLQHIGEHFQPVIDGLQSESYYAVA 271
            G +G  L    +++R++++L   +     L  R Q LQ++G+ F+ V      +S   V 
Sbjct: 284  GIIGPDLSNSFLTDRLELLLRGFKKRYPQLRNRTQVLQYLGDKFRIVFQAPPDKSDLDVG 343

Query: 272  ETVIRDYIFVHLN--DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
            + V+   + VHLN   N DK  LL+FM++KL+SLV      DNPD+ Q+QE+LL G L  
Sbjct: 344  KEVLHRIVLVHLNGDTNEDKCRLLLFMIRKLYSLVAGACSPDNPDATQHQEVLLGGFLYG 403

Query: 330  IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
            + LKEK++++++     I+ +I N G   +F +   + +V+ +  +  IG+ ++  L TG
Sbjct: 404  MILKEKVDEYMQSIIAQIRTDI-NRGIPANFKDRKYMTRVLMR-VNDNIGSKMQYFLSTG 461

Query: 390  RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
             L +Q+GLDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFL
Sbjct: 462  NLVSQSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFL 521

Query: 450  CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
            CPVHTPDG PCGLLNH    CR+++         D S+    I  +L  +G+ P+     
Sbjct: 522  CPVHTPDGAPCGLLNHFAHKCRISTKQS------DVSQ----IPSILYSLGVSPASQAFA 571

Query: 510  KSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV-IPDDLEVGYVPLSLGGA 568
                P++  V +DG++VG     +   +   LR  KV   +  +P DLE+GYVPLS  G 
Sbjct: 572  AG--PSLCCVQIDGKIVGWTSHEQGRIIADTLRLWKVEGKTPGLPLDLEIGYVPLSSRGQ 629

Query: 569  YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPAT 628
            YPGLY+F    + +RPVR + L  E+     ++GPFEQV+M I         + N    T
Sbjct: 630  YPGLYIFGGHSRMMRPVRYLPLDKED-----IVGPFEQVYMNIAVTP--QELQNNVH--T 680

Query: 629  HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTP 688
            H E  PT +LS++ANLTP+SD NQSPRNMYQCQMAKQTMG    AL  R+D KLY LQ+ 
Sbjct: 681  HVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMAKQTMGTPGVALCHRSDNKLYRLQSG 740

Query: 689  QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
            QTP+V+ N Y  YG+D +P G NA+VAV++YTGYDM+DAMI+NKS+ +RG  +G +Y+TE
Sbjct: 741  QTPVVKANLYDDYGMDNFPNGINAVVAVISYTGYDMDDAMIINKSADERGFAYGTMYKTE 800

Query: 749  TIDLSDDGNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN 806
             +DLS + ++ D   + F    D   K     +D DGLP++G  +  G+P  + +D T N
Sbjct: 801  KVDLSLNRSRGDPISQHFGFGNDEWPKEWLEKLDEDGLPFIGTYVEEGDPIVAYFDDTLN 860

Query: 807  SWRTNSRKGSESVFVDYVAV--DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVC 864
              +  +   +E  +++ V +  D  N     Q  +I++R  R P IGDKFSSRHGQKGVC
Sbjct: 861  RTKVKTYHSTEPAYIEEVNLIGDESNKLQELQTVSIKYRIRRTPQIGDKFSSRHGQKGVC 920

Query: 865  SQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFAN 924
            S+ WP +DMPFS  TG++PD+IINPHAFPSRMTI M +ES+A K G+LHG   DA+P+  
Sbjct: 921  SRKWPTVDMPFSE-TGIQPDVIINPHAFPSRMTIGMFVESLAGKAGTLHGVAQDASPWV- 978

Query: 925  SVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQR 984
                       DE+ +  D  G+ L   G+NYHG E +YSG  G EL  +I++G VYYQR
Sbjct: 979  ----------FDENDTPADYFGDQLLKSGYNYHGNEPMYSGASGEELRADIYVGVVYYQR 1028

Query: 985  LRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTC 1044
            LRHMV+DKFQVRSTG ++ +T QP+KGRKR GGIR GEMERD+L+ HG ++LL DRL   
Sbjct: 1029 LRHMVNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIGHGTSFLLQDRLLNS 1088

Query: 1045 SDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPAR----------APKKVT------ 1088
            SDY   +VC  CGS+L        ++++  IG +   R          A K +       
Sbjct: 1089 SDYTQTNVCRECGSILAT------QQSVPRIGSISSLRCRRCAINFDEAKKTLAKFEGSD 1142

Query: 1089 ------CHACQTSKGME--------TVAMPYVFRYLAAELAAMNIKI 1121
                   H  +  +G +        TVA+P+V ++L +ELAAM I++
Sbjct: 1143 NVFIDDSHIWEDGQGNKFVGGGETTTVAIPFVLKFLDSELAAMGIRL 1189


>gi|302503725|ref|XP_003013822.1| hypothetical protein ARB_07934 [Arthroderma benhamiae CBS 112371]
 gi|291177388|gb|EFE33182.1| hypothetical protein ARB_07934 [Arthroderma benhamiae CBS 112371]
          Length = 1243

 Score =  863 bits (2231), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/1170 (42%), Positives = 686/1170 (58%), Gaps = 135/1170 (11%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDA-GSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
             CR+   +Y G+L A +E++  +      VRE    GQ P+M+++ RCHL+ A   +LV 
Sbjct: 126  ECRERHATYRGRLRARLEYRINNGEWKESVRE---LGQVPIMIRSNRCHLEKATPSQLVD 182

Query: 96   LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
             KEE+ E+GGYFI+NG E++ R +I+ K+N+P +++R+SF+ R   YT   V +R VR D
Sbjct: 183  HKEESEELGGYFIVNGNEKLIRMLIVGKRNFPTAIIRNSFQKRGSAYTKFGVQLRSVRPD 242

Query: 156  QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
            Q+S T  L+YL +G+V   F  +  EYL+PV ++LKAL++TND EIF  L          
Sbjct: 243  QTSQTNVLHYLNDGNVTFRFSWRKNEYLVPVVMILKALIETNDREIFERLV--------G 294

Query: 216  EKGAVG--SPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAET 273
             +G++G  +  V++RV+++L   +   + +R +C  ++G  F+ V+   +      V   
Sbjct: 295  REGSLGIENTFVTDRVELLLRTYKAYGVHSRSKCRAYLGSKFRFVLGMPEDIPEEDVGTE 354

Query: 274  VIRDYIFVHLND-------NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGH 326
             +R  +  HL +       +NDKFN+++FM++KL++LV      DNPD++ NQE+LL G+
Sbjct: 355  FLRKIVLPHLGNQNVTETQDNDKFNMILFMIRKLYNLVAGDCAPDNPDAVSNQEVLLGGY 414

Query: 327  LITIYLKEKLEDWLRKGKKLIQD-EIENNGKKFD--FFNLANIKKVMEKNPSKQIGTSIE 383
            L  + LKE+LE+WL+    +++D  + N   KF    F    + +++ +  ++ IG ++E
Sbjct: 415  LYGMLLKERLEEWLKSVGPMVRDWRMRNQDAKFTDPKFEREFLTRIIGRT-NENIGGAME 473

Query: 384  TMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLP 443
              L TG L + TGLDLQQ +GYTV AE++NF RFIS FR +HRG+ FA L+TT+VRKLLP
Sbjct: 474  YFLSTGNLVSPTGLDLQQPSGYTVMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLP 533

Query: 444  ESWGFLCPVHTPDGEPCGLLNHMTSTCRVA-SYYDSRGNIRDFSKMRTSILRVLIGVGMI 502
            ESWGFLCPVHTPDG PCGLLNH+   C ++ S  D  G           I  VL G+G+ 
Sbjct: 534  ESWGFLCPVHTPDGSPCGLLNHLAHKCLISTSNLDVSG-----------IPGVLAGLGVT 582

Query: 503  PSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVP 562
                  ++   P    V LDG+++G     +   +   LR  KV     IP +LE+GYVP
Sbjct: 583  SESSCSIEESIP----VQLDGKILGYCTPKQSRAIADTLRYWKVQGHKQIPVELEIGYVP 638

Query: 563  LSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRR 622
             S GG YPG+Y+F+   +  RPV+ + L       ++ +GPFEQ +MEI C        R
Sbjct: 639  SSNGGQYPGVYMFSEAARMYRPVKYLPL-----DKLDYVGPFEQPYMEIACVASDI---R 690

Query: 623  NAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKL 682
            N   +TH E  PT +LS++AN+TP+SD NQSPRNMYQCQM KQ MG    A+ +R D KL
Sbjct: 691  NGV-STHIEFDPTHILSILANMTPFSDFNQSPRNMYQCQMGKQAMGTPGTAIDYRTDNKL 749

Query: 683  YHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG 742
            Y LQT QTP+VR   Y  YG+D +P G NA+VAV++YTGYDM+DAMI+NKSS +RG  +G
Sbjct: 750  YRLQTGQTPVVRPPLYNAYGLDNFPNGMNAVVAVISYTGYDMDDAMIINKSSHERGFGYG 809

Query: 743  QIYQTETIDLSDDGNKVDRGQ------KLFRRNKDA---KSLHSVIDSDGLPYVGQMIHP 793
             IY+T+   L DD     RG+      KLF             + +D DGLP++G  +  
Sbjct: 810  TIYKTKIYAL-DDKESRGRGKSKRAITKLFGFAPGGLVKAEWKAQLDEDGLPHIGAKVSE 868

Query: 794  GE----PYCSIYDKTTNSWRTNSR-------KGSESVFVDYVAVDMKNSKN-LPQKANIR 841
            G      +   YD  T+++    +       K  E  F+D V V    + N + Q  +I+
Sbjct: 869  GSLVGAWHTVQYDPATDTYINVDKQTHFLKYKDGEEGFIDSVRVLGSETGNEVCQAISIK 928

Query: 842  FRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAML 901
            +R  R P+IGDKFSSRHGQKGV SQLWP  DMPFS  +G++PD+IINPHAFPSRMTI M 
Sbjct: 929  YRVPRRPVIGDKFSSRHGQKGVLSQLWPATDMPFS-ESGIQPDVIINPHAFPSRMTIGMF 987

Query: 902  LESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEV 961
            +ES+A K GSLHG   D+TPF  S + T GD             G+ L+  G+N+HG E 
Sbjct: 988  VESLAGKAGSLHGLPQDSTPFQFSEEATAGDF-----------FGKQLQRAGYNFHGNEP 1036

Query: 962  LYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFG 1021
            +YSG+ G E   +I+IG VYYQRLRHMV+DKFQVR+TG ++ +T QP+KGR +GGGIR G
Sbjct: 1037 MYSGITGREFAADIYIGVVYYQRLRHMVNDKFQVRTTGPVNALTGQPVKGRAKGGGIRVG 1096

Query: 1022 EMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVL--------------------- 1060
            EMERD+LLAHGAA+LL DRL  CSD   A +C  CGS +                     
Sbjct: 1097 EMERDALLAHGAAFLLQDRLMNCSDSQRAWICRTCGSFISTQVAVSQLLSPHKNPAMDAV 1156

Query: 1061 ---TATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSK--------------------G 1097
               TA+ I      +  +GGL        V C  C                        G
Sbjct: 1157 VQSTASAIAKPLSGVSALGGLAGI-----VRCRRCAREAVFDDPRAEVWEDGSGKRYVGG 1211

Query: 1098 MET--VAMPYVFRYLAAELAAMNIKITLQL 1125
             +T  VA+P V +YL  ELAAM IK+  Q+
Sbjct: 1212 SDTTVVAVPGVLKYLDVELAAMGIKMRFQV 1241


>gi|388582560|gb|EIM22864.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Wallemia sebi CBS 633.66]
          Length = 1179

 Score =  863 bits (2231), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/1096 (42%), Positives = 661/1096 (60%), Gaps = 91/1096 (8%)

Query: 72   GQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMV 131
            G  PVM+++ RC+LQ   S +LV   EE+ EMGGYFI+NG E++ R +++P+++Y  S++
Sbjct: 132  GSVPVMVRSERCNLQKMTSAELVQKHEESDEMGGYFIINGNEKLMRLLVVPRRHYVTSII 191

Query: 132  RSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLK 191
            R SF +R   YT+  V IRCVR DQ++ T  ++YL NG   L F  +  EY++PV +VLK
Sbjct: 192  RPSFANRGPTYTEYGVQIRCVRPDQTAATNTMHYLSNGGATLRFAWRKNEYMIPVVMVLK 251

Query: 192  ALVDTNDLEIFNHLTCC-YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQH 250
            AL   +D +IF  +    YD  +           +++RV+++L   +   L TR QCL  
Sbjct: 252  ALSSASDRDIFEGIIQKDYDNTF-----------LTDRVELLLRGFKPFKLYTREQCLHF 300

Query: 251  IGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVS 310
            +G  F+ V+   +  +   V + +I   I VHL    DK+ +L++MLQKL+SLV   S  
Sbjct: 301  LGSKFRVVLGCPEDWTDIQVGQYLIDRCILVHLQSPQDKYRMLLYMLQKLYSLVSGESCP 360

Query: 311  DNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVM 370
            DNPDS Q  E+L+PG L    +KEKL++ L      I+ ++       +  +   + KV+
Sbjct: 361  DNPDSPQLHEVLMPGFLYGQIIKEKLDECLIAATAQIRQDLRRQVSSANVSDDKYVNKVI 420

Query: 371  EKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASF 430
            ++  +  IG  +   L TG L + +GLDLQQ  G+T+ AE+LNF R+++ FR +HRGA F
Sbjct: 421  QRT-NFDIGQKLNYFLATGNLVSPSGLDLQQATGFTIMAEKLNFYRYLAHFRCIHRGAFF 479

Query: 431  AGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRT 490
            A L+TT+VRKLLPE+WGFLCPVHTPDG PCGLLNH++ +C+V +         +  +  +
Sbjct: 480  AELKTTAVRKLLPEAWGFLCPVHTPDGAPCGLLNHLSRSCKVTT--------ENLEESAS 531

Query: 491  SILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAAS 550
            +I  +L  +GMI      V       +++ LDGR++G   + +++ +   LR  K     
Sbjct: 532  NIPSLLSSLGMIQPFVNTVDRR--NSVAIQLDGRIIGWASTEDVKHMAEALRIWKTEKLH 589

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFME 610
             +P +LE+G VP S GG YPGLYLFTS  + +RPV+ ++     +  ++ +G FEQV+M+
Sbjct: 590  DVPLNLEIGLVPSSKGGQYPGLYLFTSRARMMRPVKYLA-----NGKLDHLGSFEQVYMD 644

Query: 611  IRC-PDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGF 669
            + C P   + G      +TH E  PT +LSVVAN+TP+SD NQSPRNMYQCQMAKQTMG 
Sbjct: 645  VACVPKEIEKG-----ISTHVEYTPTNVLSVVANMTPFSDFNQSPRNMYQCQMAKQTMGT 699

Query: 670  SVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMI 729
               A+  R D KLY +Q  QTPIVR   +  YG+D +P G NAIVAVL+YTGYDMEDAMI
Sbjct: 700  PSTAIMRRTDNKLYRIQNGQTPIVRPKLHAHYGMDNFPQGANAIVAVLSYTGYDMEDAMI 759

Query: 730  LNKSSVDRGMCHGQIYQTETIDLSD--DGNKVDRGQKL-FRRNKDAK-SLHSVIDSDGLP 785
            +NKS+ +RG  +G +Y+++ +DL +    +K      L F    DAK      +D DG+ 
Sbjct: 760  INKSAHERGFGYGTVYKSQIVDLREMRGASKSRSAPTLHFGLGVDAKQEWRETLDDDGII 819

Query: 786  YVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRH 844
              G  +  G+P C+  D+TT        KG E  ++D + +   +  +   QK + + R 
Sbjct: 820  PSGVKVTSGDPICAYIDETTGRTMVEKYKGDEDAYIDEIRLLGSDGGDTELQKIHFKIRI 879

Query: 845  TRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLES 904
             R+P++GDKFSSRHGQKGV SQ W  ID+PFS  +G++PD+IINPHAFPSRMTI M +ES
Sbjct: 880  PRSPVVGDKFSSRHGQKGVMSQRWKKIDLPFSE-SGLQPDVIINPHAFPSRMTIGMFVES 938

Query: 905  VAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYS 964
            +A K G+LHG   D TPF             +E  + V+  GE L++ G+NYHG E +YS
Sbjct: 939  IAGKAGALHGLAQDGTPF-----------NFNEKDTPVEYFGEQLKSAGYNYHGNEPMYS 987

Query: 965  GVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEME 1024
            GV G E   +I+IG VYYQRLRHMV+DK+QVR+ G +DQ+TRQPIKGRKR GGIR GEME
Sbjct: 988  GVTGEEFPADIYIGCVYYQRLRHMVNDKYQVRTLGPVDQLTRQPIKGRKRHGGIRLGEME 1047

Query: 1025 RDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP 1084
            RD+L+AHG ++LL DRL  CSDY    VC  CGS+++  +   +  A  ++      + P
Sbjct: 1048 RDALIAHGTSFLLQDRLMNCSDYSTTWVCRDCGSLISLGYTDERDMAASQL-----PQGP 1102

Query: 1085 KKVTCHACQTSK-----------------------------------GMETVAMPYVFRY 1109
                C  C+ ++                                    M+ VA+PYV RY
Sbjct: 1103 TGEYCRVCRQAQLEKDQGELDGEVRQVERKGDIILPLSKDLNIGKGGNMDVVAVPYVLRY 1162

Query: 1110 LAAELAAMNIKITLQL 1125
            LA+ELA M I+++++L
Sbjct: 1163 LASELACMGIRMSVEL 1178


>gi|302660181|ref|XP_003021772.1| hypothetical protein TRV_04103 [Trichophyton verrucosum HKI 0517]
 gi|291185687|gb|EFE41154.1| hypothetical protein TRV_04103 [Trichophyton verrucosum HKI 0517]
          Length = 1243

 Score =  863 bits (2230), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/1170 (42%), Positives = 687/1170 (58%), Gaps = 135/1170 (11%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDA-GSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
             CR+   +Y G+L A +E++  +      VRE    GQ P+M+++ RCHL+ A   +LV 
Sbjct: 126  ECRERHATYRGRLRARLEYRINNGEWKESVRE---LGQVPIMIRSNRCHLEKATPSQLVD 182

Query: 96   LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
             KEE+ E+GGYFI+NG E++ R +I+ K+N+P +++R+SF+ R   YT   V +R VR D
Sbjct: 183  HKEESEELGGYFIVNGNEKLIRMLIVGKRNFPTAIIRNSFQKRGSAYTKFGVQLRSVRPD 242

Query: 156  QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
            Q+S T  L+YL +G+V   F  +  EYL+PV ++LKAL++TND EIF  L          
Sbjct: 243  QTSQTNVLHYLNDGNVTFRFSWRKNEYLVPVVMILKALIETNDREIFERLV--------G 294

Query: 216  EKGAVG--SPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAET 273
             +G++G  +  V++RV+++L   +   + +R +C  ++G  F+ V+   +      V   
Sbjct: 295  REGSLGIENTFVTDRVELLLRTYKAYGVHSRSKCRAYLGSKFRFVLGMPEDIPEEDVGTE 354

Query: 274  VIRDYIFVHLND-------NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGH 326
            ++R  +  HL +       +NDKFN+++FM++KL++LV      DNPD++ NQE+LL G+
Sbjct: 355  LLRKIVLPHLGNQNVTETQDNDKFNMILFMIRKLYNLVAGDCAPDNPDAVSNQEVLLGGY 414

Query: 327  LITIYLKEKLEDWLRKGKKLIQD-EIENNGKKFD--FFNLANIKKVMEKNPSKQIGTSIE 383
            L  + LKE+LE+WL+    +++D  + N   KF    F    + +++ +  ++ IG ++E
Sbjct: 415  LYGMLLKERLEEWLKSVGPMVRDWRMRNQDAKFTDPKFEREFLTRIIGRT-NENIGGAME 473

Query: 384  TMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLP 443
              L TG L + TGLDLQQ +GYTV AE++NF RFIS FR +HRG+ FA L+TT+VRKLLP
Sbjct: 474  YFLSTGNLVSPTGLDLQQPSGYTVMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLP 533

Query: 444  ESWGFLCPVHTPDGEPCGLLNHMTSTCRVA-SYYDSRGNIRDFSKMRTSILRVLIGVGMI 502
            ESWGFLCPVHTPDG PCGLLNH+   C ++ S  D  G           I  VL G+G+ 
Sbjct: 534  ESWGFLCPVHTPDGSPCGLLNHLAHKCLISTSNLDVSG-----------IPGVLAGLGVT 582

Query: 503  PSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVP 562
                  ++   P    V LDG+++G     +   +   LR  KV     IP +LE+GYVP
Sbjct: 583  SESSCSIEESIP----VQLDGKILGYCTPKQSRAIADTLRYWKVQGHKQIPVELEIGYVP 638

Query: 563  LSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRR 622
             S GG YPG+Y+F+   +  RPV+ + L       ++ +GPFEQ +MEI C        R
Sbjct: 639  SSNGGQYPGVYMFSEAARMYRPVKYLPL-----DKLDYVGPFEQPYMEIACVASDI---R 690

Query: 623  NAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKL 682
            N   +TH E  PT +LS++AN+TP+SD NQSPRNMYQCQM KQ MG    A+ +R D KL
Sbjct: 691  NGV-STHIEFDPTHILSILANMTPFSDFNQSPRNMYQCQMGKQAMGTPGTAIDYRTDNKL 749

Query: 683  YHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG 742
            Y LQT QTP+VR   Y  YG+D +P G NA+VAV++YTGYDM+DAMI+NKSS +RG  +G
Sbjct: 750  YRLQTGQTPVVRPPLYNAYGLDNFPNGMNAVVAVISYTGYDMDDAMIINKSSHERGFGYG 809

Query: 743  QIYQTETIDLSDDGNKVDRGQ------KLFRRNKDA---KSLHSVIDSDGLPYVGQMIHP 793
             IY+T+   L DD     RG+      KLF             + +D DGLP++G  +  
Sbjct: 810  TIYKTKIYAL-DDKESRGRGKSKRATTKLFGFAPGGLVKAEWKAQLDEDGLPHIGAKVSE 868

Query: 794  GE----PYCSIYDKTTNSWRTNSR-------KGSESVFVDYVAVDMKNSKN-LPQKANIR 841
            G      +   YD  T+++    +       K  E  F+D V V    + N + Q  +I+
Sbjct: 869  GSLVGAWHTVQYDPATDTYINVDKQTHFLKYKDGEEGFIDSVRVLGSETGNEVCQAVSIK 928

Query: 842  FRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAML 901
            +R  R P+IGDKFSSRHGQKGV SQLWP  DMPFS  +G++PD+IINPHAFPSRMTI M 
Sbjct: 929  YRVPRRPVIGDKFSSRHGQKGVLSQLWPATDMPFS-ESGIQPDVIINPHAFPSRMTIGMF 987

Query: 902  LESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEV 961
            +ES+A K GSLHG   D+TPF  S + T GD             G+ L+  G+N+HG E 
Sbjct: 988  VESLAGKAGSLHGLPQDSTPFQFSEEATAGDF-----------FGKQLQRAGYNFHGNEP 1036

Query: 962  LYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFG 1021
            +YSG+ G E   +I+IG VYYQRLRHMV+DKFQVR+TG ++ +T QP+KGR +GGGIR G
Sbjct: 1037 MYSGITGREFAADIYIGVVYYQRLRHMVNDKFQVRTTGPVNALTGQPVKGRAKGGGIRVG 1096

Query: 1022 EMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVL--------------------- 1060
            EMERD+LLAHGAA+LL DRL  CSD   A +C  CGS +                     
Sbjct: 1097 EMERDALLAHGAAFLLQDRLMNCSDPQRAWICRTCGSFISTQVAVSQLLSPHKNPAMDAV 1156

Query: 1061 ---TATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSK--------------------G 1097
               TA+ I      +  +GGL        V C  C                        G
Sbjct: 1157 VQSTASAIAKPLSGVSALGGLAGI-----VRCRRCAREAVFDDPRAEVWEDGSGKRYVGG 1211

Query: 1098 MET--VAMPYVFRYLAAELAAMNIKITLQL 1125
             +T  VA+P V +YL  ELAAM IK+  Q+
Sbjct: 1212 SDTTVVAVPGVLKYLDVELAAMGIKMRFQV 1241


>gi|219111265|ref|XP_002177384.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217411919|gb|EEC51847.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 1147

 Score =  863 bits (2229), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/1186 (41%), Positives = 684/1186 (57%), Gaps = 114/1186 (9%)

Query: 12   LRELVRHHIESFDYMLDEGLSE-------------------------------------M 34
            LR L   H++SFDY  ++GL+                                      +
Sbjct: 3    LRTLTAPHVDSFDYFWEQGLARGVQDIEPAEFNIVDPQKLRDNPIAKPAKAPGERSQKLL 62

Query: 35   FDHCRQAKISYTGKLMADVEFQYL------DAGSPVVRERFNFGQFPVMLKTRRCHLQGA 88
               CR+ K+ Y G++ A   ++ +      D  S  VR    FG  P+M+ ++ CHL+G 
Sbjct: 63   PRECRERKLVYAGEISATFCYRMIQRRNGVDFPSRPVRLNKTFGDMPIMVMSKGCHLEGT 122

Query: 89   DSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVV 148
              ++LV LKEE  E GGYFI+ G+ER  R + +P++N+  ++ RSS+++R   YTD  V 
Sbjct: 123  TPKQLVKLKEEDNEFGGYFIVGGIERCVRLLQVPRRNHATAIQRSSYKNRGNTYTDLGVA 182

Query: 149  IRCVRK--DQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDT-NDLEIFNHL 205
            +RC R   D S++T  ++YL  G   L F  + +E+L+P  ++L+AL  + +  E++  +
Sbjct: 183  MRCARHNGDMSAITNTVHYLTTGGANLKFVAKKQEFLIPAILILRALSGSESQTELYERI 242

Query: 206  TCCYDEKYKKEKGAVGSPLVSERVKIIL--AEVQDLSLTTRLQCLQHIGEHFQPVIDGLQ 263
                       +G   +  +  R  ++L  A  +  SL T  +CL  IG  F+ +    +
Sbjct: 243  V----------QGDQSNTFLVARAGLLLQDARARFGSLNTPDECLAFIGTRFRRLSQKAE 292

Query: 264  SESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILL 323
            + S   +   +IR ++ +HL    DK   L+ ML+KL++        DN DSLQNQEILL
Sbjct: 293  TTSDVEIGHHIIRRFVLIHLPTYRDKLECLLLMLRKLYAFAAGDCGVDNADSLQNQEILL 352

Query: 324  PGHLITIYLKEKLEDWLRKGKKLI-----QDEIENNGKKFDFFNLANIKKVMEKNPSKQI 378
            PGHL+  ++KEK E++L   +  +     +D    + K  D      +        S  I
Sbjct: 353  PGHLMCTFIKEKFEEFLSSLRLALLSDLRKDFARTSAKLTDAKYWGKMVDRHAGKASGGI 412

Query: 379  GTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSV 438
            G  ++  L TG + + +GLDL Q +GYT+ AERLNFLR+ + FR+VHRG  F  ++TT+V
Sbjct: 413  GKKVQHFLSTGNIVSTSGLDLMQVSGYTIVAERLNFLRYCAHFRSVHRGQFFMEMKTTAV 472

Query: 439  RKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASY---YDSRGNIRDFSKMRTSILRV 495
            RKLLP+ WGFLCPVHTPDG PCGLL+H+    +V +Y    D++G I     + +     
Sbjct: 473  RKLLPDQWGFLCPVHTPDGGPCGLLSHLALKSKVMAYPSRLDAKGMIDLDDLLLSL---- 528

Query: 496  LIGVGMIPSLPKLVKSGPPAV------LSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAA 549
                G+ P      ++G   +      L V +DGR+VG    S ++ + AHLR+LKV   
Sbjct: 529  ----GVTPCGAG-SRNGDGRIGSTHLHLPVSIDGRIVGGASPSVLKIIAAHLRKLKVDNP 583

Query: 550  SVIPDDLEVGYVPLSLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVF 608
             V+P  LEVG VP    GA YPGLYLFT   + VRPV N       S + E IGP EQ +
Sbjct: 584  PVVPPTLEVGLVPPGNPGAPYPGLYLFTCAARLVRPVLN-----RASGHTEFIGPLEQGY 638

Query: 609  MEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMG 668
            M+I C D  +  R      TH+E+ PT MLS++ANLTP+SD NQSPRNMYQCQM KQTMG
Sbjct: 639  MDIACLD--EDIREGI--TTHQELDPTNMLSLIANLTPFSDQNQSPRNMYQCQMGKQTMG 694

Query: 669  FSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAM 728
                +L +R D KLY LQTPQ P+V+T+ + +Y +DEYP GTNA+VAVL+YTG+DMED++
Sbjct: 695  TPAHSLPYRPDNKLYRLQTPQAPVVQTSIHGEYKMDEYPNGTNAVVAVLSYTGFDMEDSV 754

Query: 729  ILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-------DRGQKLFRRNKDAKSLHSVIDS 781
            ILNKSSV+RG  H  +Y+T  + L ++           D   K   + K  K ++  +  
Sbjct: 755  ILNKSSVERGFAHASVYKTIDVSLQEEAKMTGASSSGEDVRMKFSNKVKFDKVMYPSLQD 814

Query: 782  DGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYV-AVDMKNSKNLPQKANI 840
            DGLP VG  +  G+P   + D  +   R    K  E  +V  V A+   + K    K +I
Sbjct: 815  DGLPQVGDCMTEGDPLYCVVDSISGMDRAAKHKEREIAYVQSVRALGNDSGKGADNKVSI 874

Query: 841  RFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAM 900
              R  RNP++GDKFSSRHGQKGV S LWP  DMPFS  +G+ PD+IINPHAFPSRMTI M
Sbjct: 875  TLRFPRNPVLGDKFSSRHGQKGVLSILWPQEDMPFS-ESGISPDVIINPHAFPSRMTIGM 933

Query: 901  LLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVE 960
            ++ES+A K G+LHG F +ATPF+      +GD      K  VD  GE L+  G+NY+G E
Sbjct: 934  MVESMAGKSGALHGNFQNATPFSF---HESGD------KVSVDYFGEQLQAAGYNYYGSE 984

Query: 961  VLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRF 1020
             LYSGV G  +  +++IG VYYQRLRHMV DK+QVR+TG  +++TRQPIKGRK+GGGIR 
Sbjct: 985  PLYSGVSGCVMQADLYIGVVYYQRLRHMVLDKYQVRATGPTNELTRQPIKGRKKGGGIRL 1044

Query: 1021 GEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPP 1080
            GEMERDSLL+HG A+LL DRL  CSD HVA  C  CG +L +      +R+  +  G   
Sbjct: 1045 GEMERDSLLSHGTAFLLQDRLLNCSDKHVAYACCRCGDLLMSA----TERSTVQTTGQSA 1100

Query: 1081 ARAPKKVTCHA-CQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
              A  K      C+++  +E + +PYV+RYL  ELAAMN+K+ L +
Sbjct: 1101 NEAINKPKIRLYCRSAGSVEPIVLPYVYRYLVNELAAMNVKMRLAI 1146


>gi|258574737|ref|XP_002541550.1| DNA-directed RNA polymerase I polypeptide 2 [Uncinocarpus reesii
            1704]
 gi|237901816|gb|EEP76217.1| DNA-directed RNA polymerase I polypeptide 2 [Uncinocarpus reesii
            1704]
          Length = 1243

 Score =  862 bits (2228), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/1170 (42%), Positives = 683/1170 (58%), Gaps = 135/1170 (11%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAG-SPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
             CR+   +Y G+L A VE++  +      VRE    GQ P+ML+T RCHL+     +LV 
Sbjct: 126  ECRERHATYRGRLRARVEYKVNNGDWKESVRE---LGQVPIMLRTNRCHLEKLSPSQLVE 182

Query: 96   LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
             KEE+ E+GGYFI+NG E++ R +I+ ++N+PM+++R+SF  R   YT   V IR VR D
Sbjct: 183  RKEESEELGGYFIVNGNEKLIRMLIVSRRNFPMAIIRNSFTKRGATYTKYGVQIRSVRPD 242

Query: 156  QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
            Q+S T  L+YL +G+V   F  +  EYL+PV ++LKAL++TND EIF  L          
Sbjct: 243  QTSQTNVLHYLSDGNVTFRFSWRKNEYLVPVVMILKALIETNDREIFERLV--------G 294

Query: 216  EKGAVG--SPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAET 273
             +G++G  +  V++R++++L   +   + +R +C  ++GE F+ V+   ++     V   
Sbjct: 295  REGSLGMKNTFVTDRMELLLRTYKAYGVHSRSKCRAYLGEKFRYVLGMSENVPDEDVGTE 354

Query: 274  VIRDYIFVHLND-------NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGH 326
             +R  +  HL +       +NDKFN+++F+++KL++LV      DNPD++ NQE+LL G 
Sbjct: 355  FLRKIVLPHLGNQNVTESQDNDKFNMILFIIRKLYTLVAGDCAPDNPDAVSNQEVLLGGF 414

Query: 327  LITIYLKEKLEDWLRKGKKLIQDEIENN-GKKFD--FFNLANIKKVMEKNPSKQIGTSIE 383
            L  + LKE+LE+WLR    + +D    N G  F    F    I +++ +  ++ IG ++E
Sbjct: 415  LYGMILKERLEEWLRSIGPIARDWSNKNLGLPFTDARFEKDFISRIVART-NENIGGALE 473

Query: 384  TMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLP 443
              L TG L + TGLDLQQ +GYT+ AE++NF RFIS FR +HRG+ FA L+TT+VRKLLP
Sbjct: 474  YFLSTGNLVSPTGLDLQQPSGYTIMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLP 533

Query: 444  ESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP 503
            ESWGFLCPVHTPDG PCGLLNH+   C +A+   S  N+    ++ +     ++GVG   
Sbjct: 534  ESWGFLCPVHTPDGSPCGLLNHLAHKCLIAT---SNLNVAGVPEVLS-----ILGVGSES 585

Query: 504  SLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL 563
            S            ++V LDGR+VG     +   +   LR  KV     IP +LEVGYVP 
Sbjct: 586  SSSTE------ESVAVSLDGRIVGYCSPKQARVISDTLRHWKVEGHPKIPVELEVGYVPN 639

Query: 564  SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRR 622
            S GG YPG+YLF+   +  RPV+ + L       ++ +GPFEQ FMEI C P     G  
Sbjct: 640  SNGGQYPGVYLFSQCARMYRPVKYLPL-----DKLDYVGPFEQPFMEIACVPSDIMSG-- 692

Query: 623  NAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKL 682
                +TH E  PT +LS++AN+TP+SD NQSPRNMYQCQM KQ MG    ++ +R D KL
Sbjct: 693  ---ISTHVEFDPTHILSILANMTPFSDFNQSPRNMYQCQMGKQAMGTPGTSIDYRTDNKL 749

Query: 683  YHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG 742
            Y LQT QTPI R   Y  YG+D +P G NA+VAV++YTGYDM+DAMI+NKS+ +RG  +G
Sbjct: 750  YKLQTGQTPIARPPLYNAYGLDNFPNGMNAVVAVISYTGYDMDDAMIINKSAHERGFGYG 809

Query: 743  QIYQTETIDLSDDGNKVDRG------QKLFRRNKDA---KSLHSVIDSDGLPYVGQMIHP 793
             IY+T+   L DD     RG      +KLF             + +  DGLP+VG  +  
Sbjct: 810  TIYKTKIYPL-DDKEARGRGKSKREIKKLFGFAPGGLVKAEWRNQLGEDGLPHVGGRVKD 868

Query: 794  GEPYCSI----YDKTTNSWRTNSR-------KGSESVFVDYVAVDMKNSKNLP-QKANIR 841
            G+   +     YD    ++    +       K +E  ++D + +    + N P Q  +I+
Sbjct: 869  GDLVAAWHTVQYDPAAETYLNVDKETHFLKYKDAEEGYIDSIRILGSETGNEPCQAISIK 928

Query: 842  FRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAML 901
            +R  R PIIGDKFSSRHGQKGVCSQLWP +DMPFS  +G++PD+IINPHAFPSRMTI M 
Sbjct: 929  YRIPRKPIIGDKFSSRHGQKGVCSQLWPAVDMPFS-ESGIQPDIIINPHAFPSRMTIGMF 987

Query: 902  LESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEV 961
            +ES+A K G+LHG   D TPF  S + T G           D  GE LR  G+N+HG E 
Sbjct: 988  VESLAGKAGALHGLAQDCTPFQFSEEYTAG-----------DHFGEQLRKAGYNFHGNEP 1036

Query: 962  LYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFG 1021
            +YSGV G E   +I++G VYYQRLRHMV+DKFQVR+TG ++ +T QP+KGR +GGGIR G
Sbjct: 1037 MYSGVTGREFAADIYLGVVYYQRLRHMVNDKFQVRTTGPVNALTGQPVKGRAKGGGIRVG 1096

Query: 1022 EMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLT-----ATFIHPQKRAIRE-- 1074
            EMERD+LLAHGAA+LL DRL  CSD   A +C  CGS L+     +  + P K    E  
Sbjct: 1097 EMERDALLAHGAAFLLQDRLMNCSDSTRAWLCRTCGSFLSTQVAVSQLLSPHKNPAMEAV 1156

Query: 1075 -----------------IGGLPPARAPKKVTCHACQTSKGME------------------ 1099
                             +GGL        V C  C      +                  
Sbjct: 1157 VKSSSVAVAKPTGGVSALGGLSGI-----VRCRRCARDAVFDDPRAEVWEDGSGRRFVGG 1211

Query: 1100 ----TVAMPYVFRYLAAELAAMNIKITLQL 1125
                 VA+P V +YL  ELAAM +++   +
Sbjct: 1212 DQTTVVAVPGVLKYLDVELAAMGVRMKFHV 1241


>gi|116181610|ref|XP_001220654.1| hypothetical protein CHGG_01433 [Chaetomium globosum CBS 148.51]
 gi|88185730|gb|EAQ93198.1| hypothetical protein CHGG_01433 [Chaetomium globosum CBS 148.51]
          Length = 1188

 Score =  862 bits (2228), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/1187 (41%), Positives = 700/1187 (58%), Gaps = 127/1187 (10%)

Query: 9    FEPLRELVRHHIESFDYM---------LDEGLSEM-----FDHCRQAKISYTGKLMADVE 54
            +  L+  V  HIESF+ +         LD  L+E+      D   +A  +   KL   + 
Sbjct: 33   YPALQLAVDPHIESFNALFRTDGKPGLLDHALAEIGTKTFLDGDDRAAPANKNKLTIRI- 91

Query: 55   FQYLDAGSP--VVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGL 112
                + G P   VRE    GQ P+M+K+ +CHL+      LV  KEE+ E+GGYFI+NG+
Sbjct: 92   ----NGGEPQEFVRE---LGQMPIMIKSNKCHLENNSPALLVQRKEESEELGGYFIVNGI 144

Query: 113  ERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVR 172
            E++ R +++ ++N+P++++R SF +R   YT   +++R VR D++S T  L+YL +G+V 
Sbjct: 145  EKIIRLLLVNRRNFPLAIIRPSFTNRGPSYTPYGIIVRSVRPDETSQTNVLHYLNDGNVT 204

Query: 173  LGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKII 232
              F  +  EYL+PV ++LKAL++TND EIF  L    + K       + +  +++RV+++
Sbjct: 205  FRFSWRKNEYLVPVMMILKALIETNDREIFEGLVGPPNSK------GIENTFLTDRVELL 258

Query: 233  LAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLN-------D 285
            L   +   L T+ Q   ++GE F+ V+   ++ S Y V    +R  + V+L         
Sbjct: 259  LRTYKTYGLYTKTQTRAYLGEKFRVVLGVPETMSDYEVGTEFLRRIVLVNLGCVDVTEEQ 318

Query: 286  NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKK 345
            + DKF +L+FM +KL++LV      DNPD++QNQEILL G L  + LKE+L++ L    +
Sbjct: 319  DLDKFKMLLFMCRKLYALVAGDCAVDNPDAVQNQEILLGGFLYGMVLKERLDELLSVSLR 378

Query: 346  L-IQDEIENNGKKFDFFNLANIKK----VMEKNPSKQIGTSIETMLKTGRLATQTGLDLQ 400
            L ++D +  N  +   F  +   K     + +  ++ +G ++E  L TG L + +GLDLQ
Sbjct: 379  LALRDYLRRNPSQS--FTSSGFTKDFPIAIFRRTNENLGNALEYFLSTGNLQSPSGLDLQ 436

Query: 401  QRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPC 460
            Q +G+TV AE+LNFLRFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPVHTPDG PC
Sbjct: 437  QTSGFTVVAEKLNFLRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPC 496

Query: 461  GLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVL 520
            GLLNHM   C++ +  DS              +  + GV M   +     +     + V+
Sbjct: 497  GLLNHMAHKCKIIT--DSVD------------VSAVPGVAMELGVNDYSSAATSESVVVM 542

Query: 521  LDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPK 580
            LDGR++G    +  + V  +LRR KV     IP  LE+GYVP S GG+YPG+Y+ +   +
Sbjct: 543  LDGRIIGWCTPNAAKAVADNLRRWKVEGGHGIPILLEIGYVPPSKGGSYPGIYMSSQSSR 602

Query: 581  FVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDG----GDGGRRNAFPATHEEIHPTG 636
             VRPV+ + L  E+      +GP EQ +M I C DG    GD        +TH E  PT 
Sbjct: 603  MVRPVKYLPLGKED-----FVGPHEQPYMSIACTDGEVLPGD--------STHVEFDPTH 649

Query: 637  MLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTN 696
            +LS++AN+TP+SD NQSPRNMYQCQM KQTMG    AL+ R D K+Y LQT QTPIVR  
Sbjct: 650  ILSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPGTALRHRTDNKMYRLQTGQTPIVRAP 709

Query: 697  TYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDG 756
             +  YG D +P G NA+VAV++YTGYDM+DAMI+NKS+ +RG  HG IY+T+ + L DD 
Sbjct: 710  LHNTYGFDNFPNGMNAVVAVISYTGYDMDDAMIINKSAHERGFGHGTIYKTKKVSLKDDS 769

Query: 757  NKVDRGQKLFRR-------NKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN-SW 808
                R  K   +       +    S   ++D DGLPYVG+++  G+  C+ +  + + S 
Sbjct: 770  RT--RTSKTISKMFGFAPGSPVRASDREMLDEDGLPYVGRLVREGDILCAWHTVSADYSG 827

Query: 809  RTNSRKG---------SESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRH 858
            +  +R G         +E  F++ V V   +S   P Q  +I+ R  R+PIIGDKFSSRH
Sbjct: 828  QLINRDGITHWERYKEAEDAFIEEVRVIGSDSGTEPLQTVSIKLRIPRSPIIGDKFSSRH 887

Query: 859  GQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMD 918
            GQKGV SQ WP IDMPFS  TG++PD+IINPHAFPSRMTI M +ES+A K G+LHG   D
Sbjct: 888  GQKGVASQKWPAIDMPFS-ETGIQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGLAQD 946

Query: 919  ATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIG 978
            +TPF  + + T GD             G  L   G+NYHG E +YSG+ G E  C+I+IG
Sbjct: 947  STPFKFNEEHTAGDY-----------FGHQLMKAGYNYHGNEPMYSGITGEEFACDIYIG 995

Query: 979  PVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLH 1038
             VYYQRLRHMV+DK+QVR+TG +   T QPIKGRK+GGGIR GEMERD+LLAHG A+LL 
Sbjct: 996  VVYYQRLRHMVNDKYQVRTTGPVVPTTGQPIKGRKKGGGIRVGEMERDALLAHGTAFLLQ 1055

Query: 1039 DRLHTCSDYHVADVCSLCGSVLT-----ATFIHPQKRA-----------IREIGGLPPAR 1082
            DRL  CSDY  + +C  CGS L      + FI  +K+            + +I GL   +
Sbjct: 1056 DRLLNCSDYSKSWICRGCGSFLAVQPTVSPFIGKRKQVGTVRCRNCAQRLDQIEGLDLMK 1115

Query: 1083 APKKV--TCHACQTSKGMET--VAMPYVFRYLAAELAAMNIKITLQL 1125
               ++       Q   G  T  V +P   ++L  ELAAM +K+  ++
Sbjct: 1116 LDGEIWEDGQGVQWIGGENTAMVVVPGALKFLDVELAAMGVKLKYRV 1162


>gi|431913096|gb|ELK14846.1| DNA-directed RNA polymerase I subunit RPA2 [Pteropus alecto]
          Length = 1105

 Score =  860 bits (2223), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/1168 (41%), Positives = 658/1168 (56%), Gaps = 152/1168 (13%)

Query: 12   LRELVRHHIESFDYMLDEGLSEMFD----------------------------------- 36
            L++L + H+ESF+Y + EGL                                        
Sbjct: 35   LQKLTQAHVESFNYAVREGLGHAVQAIPPFEFAFKDERISLTIVDAVISPPTVPKGSICK 94

Query: 37   -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
                    CR  + +Y GKL AD+ +        V+++    G  P+M+K+  C+L G  
Sbjct: 95   ELSVYPAECRGRRSTYRGKLTADISWAVNGVSKGVIKQFL--GYVPIMVKSTLCNLHGLP 152

Query: 90   SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
             + L+   EE  EMGGYFI+NG+E+V R +I+P++N+P++M+R  ++ R  GYT   V +
Sbjct: 153  PKALIEHHEEPEEMGGYFIINGIEKVIRLLIMPRRNFPIAMIRPKWKARGPGYTQYGVSM 212

Query: 150  RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
             CVR + S+  + L+YL NG+V L F  + + + LP+G  LK L                
Sbjct: 213  HCVRGEHSATNMNLHYLENGTVMLNFIYRKELFFLPLGFALKML---------------- 256

Query: 210  DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ---PVIDGLQSES 266
                              RV      V D   +T+ Q L ++GE F+    + D   SE 
Sbjct: 257  ------------------RV------VMDEGCSTQKQVLGYLGERFRVKLSLPDWYPSEQ 292

Query: 267  YYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGH 326
                AE +    I +HL  N +KF +L FM +KLF+L     + +NPDSL NQE+L PG 
Sbjct: 293  ---AAEFLFNQCICIHLKSNTEKFYVLCFMTRKLFALARGECMEENPDSLVNQEVLTPGQ 349

Query: 327  LITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETML 386
            L  ++LKEK+E WL   K  I  + +         N  ++ KV   N    +    E +L
Sbjct: 350  LFLMFLKEKMEAWLVSIKLAIDKKAQKTNVSL---NTESLMKVF--NLGTDLTKPFEYLL 404

Query: 387  KTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESW 446
             TG L ++TGL   Q +G  V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESW
Sbjct: 405  ATGNLRSKTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESW 464

Query: 447  GFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLP 506
            GFLCPVHTPDGEPCGL+NH+T+ C V + +              SI  +L  +G+ P   
Sbjct: 465  GFLCPVHTPDGEPCGLMNHLTAVCEVVTQF----------VYTASIPALLCSLGVTP--- 511

Query: 507  KLVKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVP 562
              V   P  + +    VLLDG +VG +       V A LRR KV     IP  +EV  +P
Sbjct: 512  --VDGAPHRLYTECYPVLLDGIMVGWVDKDLAPSVAASLRRFKVLREKRIPPWMEVVLIP 569

Query: 563  LSLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGR 621
            ++   + YPGL+LFT+P + VRPV+N+ L  EE     L+G  EQVF+ I   +      
Sbjct: 570  MTGKPSLYPGLFLFTNPCRLVRPVQNVELGHEE-----LVGTMEQVFLNIAVFEA----E 620

Query: 622  RNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQK 681
                  TH+E+ P  +LSV+AN  P+SDHNQSPRNMYQCQM KQTMGF +   + R+D K
Sbjct: 621  VVVGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYRDRSDNK 680

Query: 682  LYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCH 741
            LY LQTPQ+P+VR   Y  Y +D YP GTNAIVAV++YTGYDMEDAM++NK+S +RG  H
Sbjct: 681  LYRLQTPQSPLVRPRMYDHYDMDNYPIGTNAIVAVISYTGYDMEDAMVVNKASWERGFAH 740

Query: 742  GQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIY 801
            G +Y++E IDL++   + D       +  D ++    +DSDGLP+VG  +  G+PY S  
Sbjct: 741  GSVYKSEFIDLTEKVKQGDDSLVFGVKPGDPRTAQK-LDSDGLPFVGAWLRYGDPYFSYV 799

Query: 802  DKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQ 860
               +           ES  VD + V   ++     K   I  R  RNP IGDKF+SRHGQ
Sbjct: 800  SLHSGDGAVVLYTSKESCIVDNIKVCSNDAGTGKFKCVCITVRVPRNPTIGDKFASRHGQ 859

Query: 861  KGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDAT 920
            KG+ S+LWP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+A K  +LHG   DAT
Sbjct: 860  KGILSRLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCQDAT 918

Query: 921  PFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPV 980
            PF  S           E  S +   G+ML+  G+ ++G E LYSG+ G EL  +IFIG V
Sbjct: 919  PFTFS-----------EENSALGHFGDMLKAAGYAFYGTERLYSGISGLELEADIFIGVV 967

Query: 981  YYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDR 1040
            YYQRLRHMVSDKFQVR+TG  D+ T QP+ GR   GGIRFGEMERD+LLAHG ++LLHDR
Sbjct: 968  YYQRLRHMVSDKFQVRTTGARDRATNQPVGGRNVQGGIRFGEMERDALLAHGTSFLLHDR 1027

Query: 1041 LHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP---KKVTCHACQTSKG 1097
            L  CSD  VA VC  CGS+L+     P           PPA +    +K +C  CQ S  
Sbjct: 1028 LFNCSDRSVAHVCVRCGSLLSPLLEKP-----------PPAWSAMRNRKYSCTVCQRSDT 1076

Query: 1098 METVAMPYVFRYLAAELAAMNIKITLQL 1125
            ++TV++PYVFRY  AELAAMNIK+ L +
Sbjct: 1077 IDTVSVPYVFRYFVAELAAMNIKVKLDV 1104


>gi|47209534|emb|CAF89806.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1071

 Score =  860 bits (2223), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/1135 (42%), Positives = 659/1135 (58%), Gaps = 147/1135 (12%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR  + SY GKL+AD+ +        ++++    G  P+M+K++ C+L+G    +L    
Sbjct: 36   CRGRRCSYKGKLVADISWSVNGVPRGIIKQ--TLGHLPIMVKSQLCNLRGLTPTQL---- 89

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
                EMGGYFI+NG+E+V R +I+ ++NYP++M R  ++ R +GYT   + +RCV++D +
Sbjct: 90   ----EMGGYFIVNGIEKVIRMLIMQRRNYPVAMSRPKWKSRGQGYTQYGISMRCVKEDHT 145

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            +V + L+YL NG+V L F  Q + + LP+G  LKALVD  D +I+  L           K
Sbjct: 146  AVNMTLHYLDNGTVMLNFIYQKELFFLPLGFALKALVDFTDFQIYQELI----------K 195

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
            G                  +D S     Q L  +GE F+  ++  +  ++   A  ++ D
Sbjct: 196  GR-----------------EDNSFYKN-QVLSFLGERFRVKMNLPEWYTHQQCATILLED 237

Query: 278  YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
             I +HL  + +KFNLL  M +KLF+      + +NPDS+  QE+L PG L  ++LKE++ 
Sbjct: 238  CICIHLKSDAEKFNLLCLMTRKLFTFAKQECMEENPDSITFQEVLTPGQLYLMFLKERMA 297

Query: 338  DWLRKGKKLIQDEIENNGKKFDFFNLA-NIKKVMEK-NPSKQIGTSIETMLKTGRLATQT 395
             WL   K   +       KK    NL+ +   VM+  N +  I  S E +L TG L++++
Sbjct: 298  AWLVSVKLACE-------KKATRLNLSWSADSVMKIFNMATDISKSFEYLLATGNLSSKS 350

Query: 396  --------------------GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
                                GL + Q  G  V A++LNF+R++S FR VHRGA+FA +RT
Sbjct: 351  GMAAAARAAPGRRADRCCLAGLGMLQSTGLCVVADKLNFIRYLSHFRCVHRGAAFAKMRT 410

Query: 436  TSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV 495
            TSVRKLLPESWGFLCPVHTPDGEPCGL+NHMT+ C + +   S            S+  +
Sbjct: 411  TSVRKLLPESWGFLCPVHTPDGEPCGLMNHMTANCEIVAQTAS----------TVSLPAL 460

Query: 496  LIGVGMIPSLPKLVKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV 551
            L  +G+ P     V   P    S    V+LDG VVG + S     VV  LRR KV     
Sbjct: 461  LCSLGVTP-----VDGSPGQAYSDCYPVVLDGAVVGWVESDLAPAVVDALRRFKVLREKK 515

Query: 552  IPDDLEVGYVPLSLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFME 610
            IP   E+  VP +   + YP L LFT+P + +RPV+N++L  +     ELIG FEQ++M 
Sbjct: 516  IPPWTEIVLVPKTGKPSLYPALLLFTTPCRMMRPVQNLTLGKQ-----ELIGTFEQLYMN 570

Query: 611  IRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQM-------- 662
            +    G       A   TH+E+ P  MLSVVAN  PYSDHNQSPRNMYQCQM        
Sbjct: 571  V----GVFAAEVQAGVTTHQELFPHSMLSVVANFIPYSDHNQSPRNMYQCQMGECRDGSV 626

Query: 663  --AKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYT 720
               KQTMGF +     R+D KLY LQTPQ+P+VR + Y  Y +D YP+GTNA+VAV++YT
Sbjct: 627  DGGKQTMGFPLHTFADRSDNKLYRLQTPQSPLVRPSMYDHYSLDNYPSGTNAVVAVISYT 686

Query: 721  GYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVID 780
            GYDMEDAMI+NK+S +RG  HG IY+TE +DL++     D    +F        +   +D
Sbjct: 687  GYDMEDAMIVNKASWERGFAHGSIYKTEVVDLAERVKGDD--SVVFGTTPGDPRVEDKLD 744

Query: 781  SDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANI 840
            +DGLP++G ++  G+P+ S  D  T     +  +  E+  VD + V   +S         
Sbjct: 745  ADGLPHIGSVLRYGDPFYSYVDLNTGQSSVSYYRSQEACVVDNIKVCSNDS------GAG 798

Query: 841  RFRHT-------RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFP 893
            RF+H        RNP IGDKF+SRHGQKG+ S+LWP  DMPF+  +GM PD++ NPH FP
Sbjct: 799  RFKHVCITTRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTE-SGMCPDILFNPHGFP 857

Query: 894  SRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCG 953
            SRMTI ML+ES+A K G+LHG   DATPF  S           E  S ++  GEMLR  G
Sbjct: 858  SRMTIGMLIESMAGKSGALHGLSHDATPFTFS-----------EDTSALEYFGEMLRAGG 906

Query: 954  FNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRK 1013
            +NY+G E LYSG+ G EL  +IFIG VYYQRLRHMVSDKFQVR+TG  D++T QP+ GR 
Sbjct: 907  YNYYGTERLYSGLSGQELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPVGGRN 966

Query: 1014 RGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIR 1073
              GGIRFGEMERD+LLAHG+++LLHDRL  CSD  VA VC  CGS+L+     P      
Sbjct: 967  VQGGIRFGEMERDALLAHGSSFLLHDRLFNCSDRSVAQVCVDCGSLLSPLLEKP------ 1020

Query: 1074 EIGGLPP---ARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
                 PP   A   +K  C  C  S  + ++++PYVFRY  AELAAMNIK+ L++
Sbjct: 1021 -----PPYWSATRHRKTVCMLCGRSDSIASLSVPYVFRYFVAELAAMNIKVKLEV 1070


>gi|119193490|ref|XP_001247351.1| DNA-directed RNA polymerase I [Coccidioides immitis RS]
 gi|392863403|gb|EAS35848.2| DNA-directed RNA polymerase I [Coccidioides immitis RS]
          Length = 1243

 Score =  860 bits (2222), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/1174 (41%), Positives = 675/1174 (57%), Gaps = 145/1174 (12%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAG-SPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
            CR+   +Y G+L A +EF+  +      VRE    GQ P+ML+T RCHL+     +LV  
Sbjct: 127  CRERHATYRGRLRARLEFRVNNGDWKESVRE---LGQVPIMLRTNRCHLEKLTPYQLVER 183

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
            KEE+ E+GGYFI+NG E++ R +I+ ++N+PM+++R+SF  R   YT   V IR VR DQ
Sbjct: 184  KEESEELGGYFIVNGNEKLIRMLIVSRRNFPMAIIRTSFTKRGASYTKFGVQIRSVRPDQ 243

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
            +S T  L+YL +G+V   F  +  EYL+PV ++LKAL++TND EIF        E+    
Sbjct: 244  TSQTNVLHYLSDGNVTFRFSWRKNEYLVPVVMILKALIETNDREIF--------ERLVGR 295

Query: 217  KGAVG--SPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETV 274
            +G++G  +  V++R++++L   +   + ++ +C  ++GE F+ V+    + S   V    
Sbjct: 296  EGSLGINNTFVTDRMELLLRTYKAYGVHSKSKCRAYLGEKFRYVLGMADNVSDEDVGTEF 355

Query: 275  IRDYIFVHLND-------NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
            +R  +  HL +       +NDKFN+++FM++KL++LV      DNPD++ NQE+LL G L
Sbjct: 356  LRKIVLPHLGNQNVTEPQDNDKFNMILFMIRKLYTLVAGDCAPDNPDAVSNQEVLLGGFL 415

Query: 328  ITIYLKEKLEDWLRKGKKLIQDEIENN------GKKFDFFNLANIKKVMEKNPSKQIGTS 381
              + LKE+LE+WLR    L +D    N        KF+   L  I     +N    +G +
Sbjct: 416  YGMILKERLEEWLRSIGPLARDWSNRNLGALFTDPKFEKDFLGRIVARTNEN----LGGA 471

Query: 382  IETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKL 441
            +E  L TG L + TGLDLQQ +GYT+ AE++NF RFIS FR +HRG+ FA L+TT+VRKL
Sbjct: 472  LEYFLSTGNLVSPTGLDLQQPSGYTIIAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKL 531

Query: 442  LPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGM 501
            LPESWGFLCPVHTPDG PCGLLNH+   C +A+           S +  S +  ++    
Sbjct: 532  LPESWGFLCPVHTPDGSPCGLLNHLAHKCLIAT-----------SNLDVSGIPEILSTLG 580

Query: 502  IPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYV 561
            + S          AVL   LDGR+VG     +   +   LR  KV     IP +LE+GYV
Sbjct: 581  VGSESSSSLEESVAVL---LDGRIVGYCAPKQARVIADTLRHWKVEGHPKIPTELEIGYV 637

Query: 562  PLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGG 620
            P S GG YPG+Y+F+   +  RPV+ + L       ++ +GPFEQ FMEI C P     G
Sbjct: 638  PNSNGGQYPGVYIFSQCARMYRPVKYLPL-----DKLDYVGPFEQPFMEIACVPSEITSG 692

Query: 621  RRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQ 680
                  +TH E  PT +LS++AN+TP+SD NQSPRNMYQCQM KQ MG    ++ +R D 
Sbjct: 693  L-----STHVEFDPTHILSILANMTPFSDFNQSPRNMYQCQMGKQAMGTPGTSIAYRTDN 747

Query: 681  KLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMC 740
            KLY LQT QTPI R   Y  YG+D +P G NA+VAV++YTGYDM+DAMI+NKS+ +RG  
Sbjct: 748  KLYRLQTGQTPIARPPLYNAYGLDNFPNGMNAVVAVISYTGYDMDDAMIINKSAHERGFG 807

Query: 741  HGQIYQTETIDLSDDGNKVDRGQKLFRRNKD-----------AKSLHSVIDSDGLPYVGQ 789
            +G IY+T+   L D   K  RG+   RR                   + +  DGLP+VG 
Sbjct: 808  YGTIYKTKIYALDD---KEARGRGKSRREITKLFGFAPGGLVKAEWRNHLGEDGLPHVGA 864

Query: 790  MIHPGEPYCSI----YDKTTNSWRTNSR-------KGSESVFVDYVAVDMKNSKNLP-QK 837
             +  G+   +     YD    ++    +       K SE  ++D + +    + N   Q 
Sbjct: 865  KVAEGDIIAAWHTVQYDPAAETYLNVDKETHFLKYKDSEEGYIDSIRILGAETGNEACQA 924

Query: 838  ANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMT 897
             +I++R  R P+IGDKFSSRHGQKGVCSQLWP +DMPFS  +G++PD+IINPHAFPSRMT
Sbjct: 925  VSIKYRIPRKPVIGDKFSSRHGQKGVCSQLWPAVDMPFS-ESGIQPDVIINPHAFPSRMT 983

Query: 898  IAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYH 957
            I M +ES+A K G+LHG   D TPF  S + T G           D  GE LR  G+N+H
Sbjct: 984  IGMFVESLAGKAGALHGLAQDCTPFQFSEEYTAG-----------DHFGEQLRKAGYNFH 1032

Query: 958  GVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGG 1017
            G E +YSGV G E   +I+IG VYYQRLRHMV+DKFQVR+TG ++ +T QP+KGR +GGG
Sbjct: 1033 GNEPMYSGVTGREFAADIYIGVVYYQRLRHMVNDKFQVRTTGPVNAVTGQPVKGRAKGGG 1092

Query: 1018 IRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLT-----ATFIHPQKRAI 1072
            IR GEMERD+LLAHGAA+LL DRL  CSD   A +C  CGS L+     +  ++P K   
Sbjct: 1093 IRVGEMERDALLAHGAAFLLQDRLMNCSDSTRAWICRTCGSFLSTQVAVSQLLNPHKNPA 1152

Query: 1073 RE-------------------IGGLPPARAPKKVTCHACQTSKGME-------------- 1099
             E                   +GGL        V C  C      +              
Sbjct: 1153 MEAVVKSSSAAVARPTGGVSALGGLSGI-----VRCRRCAREAVFDDPRAEVWEDGSGKR 1207

Query: 1100 --------TVAMPYVFRYLAAELAAMNIKITLQL 1125
                     V +P V +YL  ELAAM +K+   +
Sbjct: 1208 FVGGDQTTVVVVPGVLKYLDVELAAMGVKMKFHV 1241


>gi|320040000|gb|EFW21934.1| DNA-directed RNA polymerase 1 [Coccidioides posadasii str. Silveira]
          Length = 1243

 Score =  860 bits (2221), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/1174 (41%), Positives = 675/1174 (57%), Gaps = 145/1174 (12%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAG-SPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
            CR+   +Y G+L A +EF+  +      VRE    GQ P+ML+T RCHL+     +LV  
Sbjct: 127  CRERHATYRGRLRARLEFRVNNGDWKESVRE---LGQVPIMLRTNRCHLEKLTPYQLVER 183

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
            KEE+ E+GGYFI+NG E++ R +I+ ++N+PM+++R+SF  R   YT   V IR VR DQ
Sbjct: 184  KEESEELGGYFIVNGNEKLIRMLIVSRRNFPMAIIRTSFTKRGASYTKFGVQIRSVRPDQ 243

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
            +S T  L+YL +G+V   F  +  EYL+PV ++LKAL++TND EIF        E+    
Sbjct: 244  TSQTNVLHYLSDGNVTFRFSWRKNEYLVPVVMILKALIETNDREIF--------ERLIGR 295

Query: 217  KGAVG--SPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETV 274
            +G++G  +  V++R++++L   +   + ++ +C  ++GE F+ V+    + S   V    
Sbjct: 296  EGSLGINNTFVTDRMELLLRTYKAYGVHSKSKCRAYLGEKFRYVLGMADNVSDEDVGTEF 355

Query: 275  IRDYIFVHLND-------NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
            +R  +  HL +       +NDKFN+++FM++KL++LV      DNPD++ NQE+LL G L
Sbjct: 356  LRKIVLPHLGNQNVTEPQDNDKFNMILFMIRKLYTLVAGDCAPDNPDAVSNQEVLLGGFL 415

Query: 328  ITIYLKEKLEDWLRKGKKLIQDEIENN------GKKFDFFNLANIKKVMEKNPSKQIGTS 381
              + LKE+LE+WLR    L +D    N        KF+   L  I     +N    +G +
Sbjct: 416  YGMILKERLEEWLRSIGPLARDWSNRNLGALFTDPKFEKDFLGRIVARTNEN----LGGA 471

Query: 382  IETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKL 441
            +E  L TG L + TGLDLQQ +GYT+ AE++NF RFIS FR +HRG+ FA L+TT+VRKL
Sbjct: 472  LEYFLSTGNLVSPTGLDLQQPSGYTIIAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKL 531

Query: 442  LPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGM 501
            LPESWGFLCPVHTPDG PCGLLNH+   C +A+           S +  S +  ++    
Sbjct: 532  LPESWGFLCPVHTPDGSPCGLLNHLAHKCLIAT-----------SNLDVSGIPEILSTLG 580

Query: 502  IPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYV 561
            + S          AVL   LDGR+VG     +   +   LR  KV     IP +LE+GYV
Sbjct: 581  VGSESSSSLEESVAVL---LDGRIVGYCAPKQARVIADTLRHWKVEGHPKIPTELEIGYV 637

Query: 562  PLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGG 620
            P S GG YPG+Y+F+   +  RPV+ + L       ++ +GPFEQ FMEI C P     G
Sbjct: 638  PNSNGGQYPGVYIFSQCARMYRPVKYLPL-----DKLDYVGPFEQPFMEIACVPSEITSG 692

Query: 621  RRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQ 680
                  +TH E  PT +LS++AN+TP+SD NQSPRNMYQCQM KQ MG    ++ +R D 
Sbjct: 693  L-----STHVEFDPTHILSILANMTPFSDFNQSPRNMYQCQMGKQAMGTPGTSIAYRTDN 747

Query: 681  KLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMC 740
            KLY LQT QTPI R   Y  YG+D +P G NA+VAV++YTGYDM+DAMI+NKS+ +RG  
Sbjct: 748  KLYRLQTGQTPIARPPLYNAYGLDNFPNGMNAVVAVISYTGYDMDDAMIINKSAHERGFG 807

Query: 741  HGQIYQTETIDLSDDGNKVDRGQKLFRRNKD-----------AKSLHSVIDSDGLPYVGQ 789
            +G IY+T+   L D   K  RG+   RR                   + +  DGLP+VG 
Sbjct: 808  YGTIYKTKIYALDD---KEARGRGKSRREITKLFGFAPGGLVKAEWRNHLGEDGLPHVGA 864

Query: 790  MIHPGEPYCSI----YDKTTNSWRTNSR-------KGSESVFVDYVAVDMKNSKNLP-QK 837
             +  G+   +     YD    ++    +       K SE  ++D + +    + N   Q 
Sbjct: 865  KVAEGDIIAAWHTVQYDPAAETYLNVDKETHFLKYKDSEEGYIDSIRILGAETGNEACQA 924

Query: 838  ANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMT 897
             +I++R  R P+IGDKFSSRHGQKGVCSQLWP +DMPFS  +G++PD+IINPHAFPSRMT
Sbjct: 925  VSIKYRIPRKPVIGDKFSSRHGQKGVCSQLWPAVDMPFS-ESGIQPDVIINPHAFPSRMT 983

Query: 898  IAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYH 957
            I M +ES+A K G+LHG   D TPF  S + T G           D  GE LR  G+N+H
Sbjct: 984  IGMFVESLAGKAGALHGLAQDCTPFQFSEEYTAG-----------DHFGEQLRKAGYNFH 1032

Query: 958  GVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGG 1017
            G E +YSGV G E   +I+IG VYYQRLRHMV+DKFQVR+TG ++ +T QP+KGR +GGG
Sbjct: 1033 GNEPMYSGVTGREFAADIYIGVVYYQRLRHMVNDKFQVRTTGPVNAVTGQPVKGRAKGGG 1092

Query: 1018 IRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLT-----ATFIHPQKRAI 1072
            IR GEMERD+LLAHGAA+LL DRL  CSD   A +C  CGS L+     +  ++P K   
Sbjct: 1093 IRVGEMERDALLAHGAAFLLQDRLMNCSDSTRAWICRTCGSFLSTQVAVSQLLNPHKNPA 1152

Query: 1073 RE-------------------IGGLPPARAPKKVTCHACQTSKGME-------------- 1099
             E                   +GGL        V C  C      +              
Sbjct: 1153 MEAVVKSSSAAVARPTGGVSALGGLSGI-----VRCRRCAREAVFDDPRAEVWEDGSGKR 1207

Query: 1100 --------TVAMPYVFRYLAAELAAMNIKITLQL 1125
                     V +P V +YL  ELAAM +K+   +
Sbjct: 1208 FVGGDQTTVVVVPGVLKYLDVELAAMGVKMKFHV 1241


>gi|320592799|gb|EFX05208.1| DNA-directed RNA polymerase 1 subunit beta [Grosmannia clavigera
            kw1407]
          Length = 1290

 Score =  860 bits (2221), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/1051 (44%), Positives = 646/1051 (61%), Gaps = 71/1051 (6%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR+   +Y GKLMA  E++ ++ G PV   R + GQ P+M+K+ RCHL+G     LV  K
Sbjct: 135  CRERHSTYRGKLMATFEYR-INNGDPVEVVR-DLGQVPIMVKSNRCHLEGLSPAALVERK 192

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EE+ E+GGYFI+NG+E++ R + + ++N+P ++ R SF++R   YT   ++ R VR D++
Sbjct: 193  EESEELGGYFIVNGIEKIIRLLQVGRRNFPHAINRPSFQNRGAAYTPYGIITRSVRPDET 252

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            S T  L+YL +G++   F  +  E+L+PV ++LKALV+TND EIF  +    + K     
Sbjct: 253  SQTNVLHYLKDGNITFRFSWRKNEFLIPVMMILKALVETNDREIFEAIVGPANSK----- 307

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
            GA  + L ++RV+++L   +   L ++     ++GE F+ V+    + S Y V    +R 
Sbjct: 308  GAENTYL-TDRVELLLRTYEFYGLYSKSATRAYLGEKFRVVLGVPTTMSNYDVGTEFLRK 366

Query: 278  YIFVHLND-------NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITI 330
             + VHL +       + DKF +LIFM++KL++LV      DNPD++QNQE+LL G L   
Sbjct: 367  IVLVHLGNMDVTEAQDADKFRMLIFMIRKLYALVAGDCAVDNPDAVQNQEVLLGGFLYGQ 426

Query: 331  YLKEKLEDWL----RKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETML 386
             LKEKL+++L    R   +        N    + F   + +  + +  ++ IG ++E  L
Sbjct: 427  ILKEKLDEFLSVSLRGALRDYWRRYPTNTMTTEAF-ARDFQAAVFRRSNENIGNALEYFL 485

Query: 387  KTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESW 446
             TG L + +GLDLQQ +G+TV AE+LNFLRF+S FR +HRG+ FA L+TT+VRKLLPESW
Sbjct: 486  STGNLISASGLDLQQVSGFTVVAEKLNFLRFLSHFRMIHRGSFFAQLKTTTVRKLLPESW 545

Query: 447  GFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLP 506
            GFLCPVHTPDG PCGLLNH+   CR+ +     G I       +++  ++  +G +    
Sbjct: 546  GFLCPVHTPDGSPCGLLNHLAHKCRIIT-----GTID-----ASAVDAIVTELGAV---- 591

Query: 507  KLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLG 566
             L  +     + V+LDGRVVG     E +++   LR  KV  +  IP +LE+GYVP S G
Sbjct: 592  SLSSASTEESVVVMLDGRVVGWCSPKEAKRIADTLRHWKVEGSHNIPAELEIGYVPQSNG 651

Query: 567  GAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFP 626
            G+YPG+Y+ ++P + VRPV+ ++L  E+      +GP EQ +M I   +        +  
Sbjct: 652  GSYPGVYMASAPSRMVRPVKYLALDKED-----FVGPQEQPYMSIAVREQ----EVISGQ 702

Query: 627  ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQ 686
             TH E+ PT MLS++AN+TP+SD NQSPRNMYQCQM KQTMG    AL  R D K Y LQ
Sbjct: 703  TTHVELDPTNMLSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPGTALAHRTDNKTYRLQ 762

Query: 687  TPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQ 746
            T QTPIVR   +  YG D +P GTN +VAV++YTGYDM+DAMI+NKS+ +RG  HG +Y+
Sbjct: 763  TGQTPIVRAPLHNAYGFDNFPNGTNVVVAVISYTGYDMDDAMIINKSAHERGFGHGSVYK 822

Query: 747  TETIDLSDDG--NKVDRGQKLFRRNKDA---KSLHSVIDSDGLPYVGQMIHPGEPYCSI- 800
            T+ I L DD          K+F     A     +  ++D DGLPY+G  +  G+P  +  
Sbjct: 823  TKKITLKDDSRTRSAKHVGKMFGFAPGAFVSGQVRGLLDDDGLPYIGMRVKMGDPLVAWH 882

Query: 801  -----YDKT----TNSWRTNSRKGSESVFVDYV-AVDMKNSKNLPQKANIRFRHTRNPII 850
                 YD T             K  E  +V+ V  +  +N   L Q  +++ R  R+P I
Sbjct: 883  TVSADYDGTLVNRDGQTHYEKYKDGEDAYVEEVRLIGNENGNELLQTISVKLRIPRSPTI 942

Query: 851  GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGG 910
            GDKFSSRHGQKGVCSQ WP +DMPF+  +G++P++IINPHAFPSRMTI M +ES+A K G
Sbjct: 943  GDKFSSRHGQKGVCSQKWPTVDMPFT-ESGLQPEVIINPHAFPSRMTIGMFIESLAGKAG 1001

Query: 911  SLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTE 970
            +LHG   D+TPF             DE  +  D  G  L   GFNYHG E +YSG+ G E
Sbjct: 1002 ALHGLAQDSTPFQ-----------FDEDNTAGDYFGHQLMKAGFNYHGNEPMYSGITGEE 1050

Query: 971  LTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLA 1030
            L  +I+IG VYYQRLRHMV+DKFQVR+TG +   T QPIKGRKRGGGIR GEMERD+LLA
Sbjct: 1051 LEADIYIGVVYYQRLRHMVNDKFQVRTTGPVVPTTGQPIKGRKRGGGIRVGEMERDALLA 1110

Query: 1031 HGAAYLLHDRLHTCSDYHVADVCSLCGSVLT 1061
            HG A+LL DRL  CSDY    +C  CGS L+
Sbjct: 1111 HGTAFLLQDRLLNCSDYSRTWICRQCGSFLS 1141


>gi|303312029|ref|XP_003066026.1| DNA-directed RNA polymerase I polypeptide 2 , putative [Coccidioides
            posadasii C735 delta SOWgp]
 gi|240105688|gb|EER23881.1| DNA-directed RNA polymerase I polypeptide 2 , putative [Coccidioides
            posadasii C735 delta SOWgp]
          Length = 1243

 Score =  859 bits (2220), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/1173 (41%), Positives = 674/1173 (57%), Gaps = 143/1173 (12%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAG-SPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
            CR+   +Y G+L A +EF+  +      VRE    GQ P+ML+T RCHL+     +LV  
Sbjct: 127  CRERHATYRGRLRARLEFRVNNGDWKESVRE---LGQVPIMLRTNRCHLEKLTPYQLVER 183

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
            KEE+ E+GGYFI+NG E++ R +I+ ++N+PM+++R+SF  R   YT   V IR VR DQ
Sbjct: 184  KEESEELGGYFIVNGNEKLIRMLIVSRRNFPMAIIRTSFTKRGASYTKFGVQIRSVRPDQ 243

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
            +S T  L+YL +G+V   F  +  EYL+PV ++LKAL++TND EIF        E+    
Sbjct: 244  TSQTNVLHYLSDGNVTFRFSWRKNEYLVPVVMILKALIETNDREIF--------ERLVGR 295

Query: 217  KGAVG--SPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETV 274
            +G++G  +  V++R++++L   +   + ++ +C  ++GE F+ V+    + S   V    
Sbjct: 296  EGSLGINNTFVTDRMELLLRTYKAYGVHSKSKCRAYLGEKFRYVLGMADNVSDEDVGTEF 355

Query: 275  IRDYIFVHLND-------NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
            +R  +  HL +       +NDKFN+++FM++KL++LV      DNPD++ NQE+LL G L
Sbjct: 356  LRKIVLPHLGNQNVTEPQDNDKFNMILFMIRKLYTLVAGDCAPDNPDAVSNQEVLLGGFL 415

Query: 328  ITIYLKEKLEDWLRKGKKLIQDEIENN------GKKFDFFNLANIKKVMEKNPSKQIGTS 381
              + LKE+LE+WLR    L +D    N        KF+   L  I     +N    +G +
Sbjct: 416  YGMILKERLEEWLRSIGPLARDWSNRNLGALFTDPKFEKDFLGRIVARTNEN----LGGA 471

Query: 382  IETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKL 441
            +E  L TG L + TGLDLQQ +GYT+ AE++NF RFIS FR +HRG+ FA L+TT+VRKL
Sbjct: 472  LEYFLSTGNLVSPTGLDLQQPSGYTIIAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKL 531

Query: 442  LPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGM 501
            LPESWGFLCPVHTPDG PCGLLNH+   C +A+           S +  S +  ++    
Sbjct: 532  LPESWGFLCPVHTPDGSPCGLLNHLAHKCLIAT-----------SNLDVSGIPEILSTLG 580

Query: 502  IPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYV 561
            + S          AVL   LDGR+VG     +   +   LR  KV     IP +LE+GYV
Sbjct: 581  VGSESSSSLEESVAVL---LDGRIVGYCAPKQARVIADTLRHWKVEGHPKIPTELEIGYV 637

Query: 562  PLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGR 621
            P S GG YPG+Y+F+   +  RPV+ + L       ++ +GPFEQ FMEI C        
Sbjct: 638  PNSNGGQYPGVYIFSQCARMYRPVKYLPL-----DKLDYVGPFEQPFMEIACVQS----E 688

Query: 622  RNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQK 681
              +  +TH E  PT +LS++AN+TP+SD NQSPRNMYQCQM KQ MG    ++ +R D K
Sbjct: 689  ITSGLSTHVEFDPTHILSILANMTPFSDFNQSPRNMYQCQMGKQAMGTPGTSIAYRTDNK 748

Query: 682  LYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCH 741
            LY LQT QTPI R   Y  YG+D +P G NA+VAV++YTGYDM+DAMI+NKS+ +RG  +
Sbjct: 749  LYRLQTGQTPIARPPLYNAYGLDNFPNGMNAVVAVISYTGYDMDDAMIINKSAHERGFGY 808

Query: 742  GQIYQTETIDLSDDGNKVDRGQKLFRRNKD-----------AKSLHSVIDSDGLPYVGQM 790
            G IY+T+   L D   K  RG+   RR                   + +  DGLP+VG  
Sbjct: 809  GTIYKTKIYALDD---KEARGRGKSRREITKLFGFAPGGLVKAEWRNHLGEDGLPHVGAK 865

Query: 791  IHPGEPYCSI----YDKTTNSWRTNSR-------KGSESVFVDYVAVDMKNSKNLP-QKA 838
            +  G+   +     YD    ++    +       K SE  ++D + +    + N   Q  
Sbjct: 866  VAEGDIIAAWHTVQYDPAAETYLNVDKETHFLKYKDSEEGYIDSIRILGAETGNEACQAV 925

Query: 839  NIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTI 898
            +I++R  R P+IGDKFSSRHGQKGVCSQLWP +DMPFS  +G++PD+IINPHAFPSRMTI
Sbjct: 926  SIKYRIPRKPVIGDKFSSRHGQKGVCSQLWPAVDMPFS-ESGIQPDVIINPHAFPSRMTI 984

Query: 899  AMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHG 958
             M +ES+A K G+LHG   D TPF  S + T G           D  GE LR  G+N+HG
Sbjct: 985  GMFVESLAGKAGALHGLAQDCTPFQFSEEYTAG-----------DHFGEQLRKAGYNFHG 1033

Query: 959  VEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGI 1018
             E +YSGV G E   +I+IG VYYQRLRHMV+DKFQVR+TG ++ +T QP+KGR +GGGI
Sbjct: 1034 NEPMYSGVTGREFAADIYIGVVYYQRLRHMVNDKFQVRTTGPVNAVTGQPVKGRAKGGGI 1093

Query: 1019 RFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLT-----ATFIHPQKRAIR 1073
            R GEMERD+LLAHGAA+LL DRL  CSD   A +C  CGS L+     +  ++P K    
Sbjct: 1094 RVGEMERDALLAHGAAFLLQDRLMNCSDSTRAWICRTCGSFLSTQVAVSQLLNPHKNPAM 1153

Query: 1074 E-------------------IGGLPPARAPKKVTCHACQTSKGME--------------- 1099
            E                   +GGL        V C  C      +               
Sbjct: 1154 EAVVKSSSAAVARPTGGVSALGGLSGI-----VRCRRCAREAVFDDPRAEVWEDGSGKRF 1208

Query: 1100 -------TVAMPYVFRYLAAELAAMNIKITLQL 1125
                    V +P V +YL  ELAAM +K+   +
Sbjct: 1209 VGGDQTTVVVVPGVLKYLDVELAAMGVKMKFHV 1241


>gi|327302082|ref|XP_003235733.1| DNA-directed RNA polymerase I [Trichophyton rubrum CBS 118892]
 gi|326461075|gb|EGD86528.1| DNA-directed RNA polymerase I [Trichophyton rubrum CBS 118892]
          Length = 1243

 Score =  859 bits (2220), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/1170 (42%), Positives = 682/1170 (58%), Gaps = 135/1170 (11%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDA-GSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
             CR+   +Y GKL A +E++  +      VRE    GQ P+M+++ RCHL+ A   +LV 
Sbjct: 126  ECRERHATYRGKLRARLEYRINNGEWKESVRE---LGQVPIMIRSNRCHLEKATPSQLVD 182

Query: 96   LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
             KEE+ E+GGYFI+NG E++ R +I+ K+N+P  ++R+SF+ R   YT   V +R VR D
Sbjct: 183  HKEESEELGGYFIVNGNEKLIRMLIVGKRNFPTGIIRNSFQKRGSAYTKFGVQLRSVRPD 242

Query: 156  QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
            Q+S T  L+YL +G+V   F  +  EYL+PV ++LKAL++TND EIF  L          
Sbjct: 243  QTSQTNVLHYLNDGNVTFRFSWRKNEYLVPVMMILKALIETNDREIFERLV--------G 294

Query: 216  EKGAVG--SPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAET 273
             +G++G  +  +++RV+++L   +     +R +C  ++G  F+ V+   +      V   
Sbjct: 295  REGSLGIENTFITDRVELLLRTYKAYGAHSRSRCRAYLGSKFRFVLGMPEDTPEEDVGTE 354

Query: 274  VIRDYIFVHLND-------NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGH 326
             +R  +  HL +       +NDKFN+++FM++KL++LV      DNPD++ NQE+LL G+
Sbjct: 355  FLRKIVLPHLGNQNVTETQDNDKFNMILFMIRKLYNLVAGDCAPDNPDAVSNQEVLLGGY 414

Query: 327  LITIYLKEKLEDWLRKGKKLIQD-EIENNGKKFD--FFNLANIKKVMEKNPSKQIGTSIE 383
            L  + LKE+LE+WL+    +++D  + N   KF    F    + K++ +  ++ IG ++E
Sbjct: 415  LYGMLLKERLEEWLKSVGPMVRDWRMRNQDAKFTDPKFEREFLTKIIGRT-NENIGGAME 473

Query: 384  TMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLP 443
              L TG L + TGLDLQQ +GYTV AE++NF RFIS FR +HRG+ FA L+TT+VRKLLP
Sbjct: 474  YFLSTGNLVSPTGLDLQQPSGYTVMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLP 533

Query: 444  ESWGFLCPVHTPDGEPCGLLNHMTSTCRVA-SYYDSRGNIRDFSKMRTSILRVLIGVGMI 502
            ESWGFLCPVHTPDG PCGLLNH+   C ++ S  D  G           I  VL  +G+ 
Sbjct: 534  ESWGFLCPVHTPDGSPCGLLNHLAHKCLISTSNLDVSG-----------IPGVLAELGVT 582

Query: 503  PSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVP 562
                  ++   P    V LDG+++G     +   +   LR  KV     IP +LE+GYVP
Sbjct: 583  SESSCSIEESIP----VQLDGKILGYCTPKQSRTIADTLRYWKVQGHKKIPVELEIGYVP 638

Query: 563  LSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRR 622
             S GG YPG+Y+F+   +  RPV+ + L       ++ +G FEQ +MEI C        R
Sbjct: 639  SSNGGQYPGVYMFSEAARMYRPVKYLPL-----DKLDYVGSFEQPYMEIACVASDI---R 690

Query: 623  NAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKL 682
            N   +TH E  PT +LS++AN+TP+SD NQSPRNMYQCQM KQ MG    A+ +R D KL
Sbjct: 691  NGV-STHIEFDPTHILSILANMTPFSDFNQSPRNMYQCQMGKQAMGTPGTAIDYRTDNKL 749

Query: 683  YHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG 742
            Y LQT QTP+VR   Y  YG+D +P G NA+VAV++YTGYDM+DAMI+NKSS +RG  +G
Sbjct: 750  YRLQTGQTPVVRPPLYNAYGLDNFPNGMNAVVAVISYTGYDMDDAMIINKSSHERGFGYG 809

Query: 743  QIYQTETIDLSDDGNKVDRGQ------KLFRRNKDA---KSLHSVIDSDGLPYVGQMIHP 793
             IY+T+   L DD     RG+      KLF             + +D DGLP++G  +  
Sbjct: 810  TIYKTKIYAL-DDKESRGRGKSKRAITKLFGFAPGGLVKAEWKAQLDEDGLPHIGAKVSE 868

Query: 794  GE----PYCSIYDKTTNSWRTNSR-------KGSESVFVDYVAVDMKNSKN-LPQKANIR 841
            G      +   YD  T+++    +       K  E  F+D V V    + N + Q  +I+
Sbjct: 869  GSLVGAWHTVQYDPATDTYINVDKQTHFLKYKDGEEGFIDSVRVLGSETGNEVCQAVSIK 928

Query: 842  FRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAML 901
            +R  R P+IGDKFSSRHGQKGV SQLWP  DMPFS  +G++PD+IINPHAFPSRMTI M 
Sbjct: 929  YRVPRRPVIGDKFSSRHGQKGVLSQLWPATDMPFS-ESGIQPDVIINPHAFPSRMTIGMF 987

Query: 902  LESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEV 961
            +ES+A K GSLHG   D+TPF  S + T GD             G+ L+  G+N+HG E 
Sbjct: 988  VESLAGKAGSLHGLPQDSTPFQFSEEATAGDF-----------FGKQLQKAGYNFHGNEP 1036

Query: 962  LYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFG 1021
            +YSG+ G E   +I+IG VYYQRLRHMV+DKFQVR+TG ++ +T QP+KGR +GGGIR G
Sbjct: 1037 MYSGITGREFAADIYIGVVYYQRLRHMVNDKFQVRTTGPVNALTGQPVKGRAKGGGIRVG 1096

Query: 1022 EMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVL--------------------- 1060
            EMERD+LLAHGAA+LL DRL  CSD   A +C  CGS +                     
Sbjct: 1097 EMERDALLAHGAAFLLQDRLMNCSDSQRAWICRTCGSFISTQVAVSQLLSPHKNPAMDAV 1156

Query: 1061 ---TATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSK--------------------G 1097
               TA+ I      +  +GGL        V C  C                        G
Sbjct: 1157 VQSTASAIAKPLSGVSALGGLAGI-----VRCRRCAREAVFDDPRAEVWEDGSGKRYVGG 1211

Query: 1098 MET--VAMPYVFRYLAAELAAMNIKITLQL 1125
             +T  VA+P V +YL  ELAAM IK+  Q+
Sbjct: 1212 SDTTVVAVPGVLKYLDVELAAMGIKMRFQV 1241


>gi|412990492|emb|CCO19810.1| RNA Polymerase subunit 2 [Bathycoccus prasinos]
          Length = 1149

 Score =  859 bits (2219), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 471/1099 (42%), Positives = 669/1099 (60%), Gaps = 63/1099 (5%)

Query: 38   CRQAKISYTGKLMADVEFQYLDA--GSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
            CR+   +Y G LM+ V  + + +    PV +       FP+M+ +  CHL+  D   L+ 
Sbjct: 105  CRETGETYCGNLMSTVCHKIVGSCRDHPVHKNIIKICSFPIMVASHACHLESLDKIGLIK 164

Query: 96   LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
              EE  E GGYFI+NG+ER+ R +I  +++Y + +VRSSF  R   ++  A  IRCV K 
Sbjct: 165  HGEEDTESGGYFIVNGIERIIRLLIQQRRHYVLGLVRSSFLRRGALFSKFATSIRCVDKT 224

Query: 156  QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIF-NHLTCCYDEKYK 214
            + S T++L+Y+  GS RLG  ++ +E+ +PVGI+++A+ D+++ EIF N    C  E   
Sbjct: 225  EISSTIRLHYMKTGSARLGLTIERQEFYIPVGIIIRAITDSSEKEIFMNSDYRCNSE--- 281

Query: 215  KEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETV 274
                   + L+++ +   L E  D  + +++  L++IG++F+ ++ G +  S   + E  
Sbjct: 282  -------NCLINDCIINCLHEATDADILSKMDALRYIGKYFRNLLRGQKFVSDVELGEFF 334

Query: 275  IRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKE 334
            I  YIF HL   ++K NLL+FMLQKL +LV      DNPD+L +QEI+LPG L+   L E
Sbjct: 335  IARYIFTHLKRQSEKANLLLFMLQKLTALVQGLCKPDNPDTLAHQEIMLPGSLLQGLLYE 394

Query: 335  KLEDWLR----KGKKLIQDEIENNGKKFDFFNLAN-IKKVMEKNPSKQIGTSIETMLKTG 389
            K+E  L     K + L      +  +  +  ++ N I +V++K     IG   E  L TG
Sbjct: 395  KMEHVLEQIRLKFQALFDVSYTDKVEALEPNSIQNSILQVIQK---YDIGRHFEYFLATG 451

Query: 390  RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
             L +++GL L Q +G+T+ A++LN+LRF+S FR+VHRGA F  LRTT++RKLLPESWGFL
Sbjct: 452  NLVSKSGLGLSQSSGFTIVADKLNYLRFLSHFRSVHRGAYFTELRTTTIRKLLPESWGFL 511

Query: 450  CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
            CP+HTPDG PCGLLNH+   C++     ++    DF  +R ++ + L G+          
Sbjct: 512  CPIHTPDGSPCGLLNHLAGECKIVV---AKTRDTDFDLVRKTVKKSL-GLNF-EFTNDSN 566

Query: 510  KSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAY 569
            +    ++L VLLDG ++G +   +    V  LRR KV ++S IP DLE+ +V    GG Y
Sbjct: 567  RENLESLLPVLLDGLLIGSLHERDAANAVRVLRRAKVDSSSYIPRDLEIAHVTFRKGGVY 626

Query: 570  PGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATH 629
            PG+Y+F+S  + VRPV   S       N+ELIG  EQ FM I+  DG +     +F  +H
Sbjct: 627  PGIYIFSSSSRLVRPVLQTS-----GGNVELIGTLEQSFMSIKTQDGENRDFCKSFKYSH 681

Query: 630  EEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQ 689
            EEI+P   LS VA+LTP+SD+NQSPRNMYQCQM KQTMG  + +  FR+D KLY L TPQ
Sbjct: 682  EEIYPDSFLSAVASLTPWSDYNQSPRNMYQCQMGKQTMGVPMHSFPFRSDSKLYRLHTPQ 741

Query: 690  TPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTET 749
             PI  T TY KYGID YP GTNA+VAVL+YTGYDMEDAMI+NK S++RG+ H  +Y+TE 
Sbjct: 742  RPIALTKTYDKYGIDNYPLGTNAVVAVLSYTGYDMEDAMIMNKFSMERGLAHATLYKTEG 801

Query: 750  IDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWR 809
            + L D  +       L +   DA            P  G ++  G+ + S+ ++ +   +
Sbjct: 802  LTLKDKNDTFTVSGPLNQTKFDAS-----------PLPGSILQKGDSFISVSNRISGKLK 850

Query: 810  TNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWP 869
                KG +   VD V +     ++  +K ++  R  RNPIIGDKFSSRHGQKGV S LWP
Sbjct: 851  KTMLKGEDKGIVDRVKISASQEQSSYEKLDVTLRFNRNPIIGDKFSSRHGQKGVLSYLWP 910

Query: 870  DIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKT 929
            + D+PF    G++PD+IINPHAFPSRMTI ML+ES+A+K G+L G F+DA+PF  ++K  
Sbjct: 911  EEDLPFIERNGIKPDIIINPHAFPSRMTIGMLMESLASKEGALSGNFVDASPF-KALK-- 967

Query: 930  NGDTGTDESKSL-VDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHM 988
                  +E  ++ ++   E L+  G+ + G E + +G  G     +IFIG VYYQRLRHM
Sbjct: 968  ------EEHLTIPLNNHYERLKDMGYKFTGTETMINGFTGCTFEVDIFIGLVYYQRLRHM 1021

Query: 989  VSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYH 1048
            VSDKFQVRS G  + +T+QPIKGRK GGGIRFGEMERDSLL+HG A L+ DRL   SD H
Sbjct: 1022 VSDKFQVRSEGPNNPLTKQPIKGRKMGGGIRFGEMERDSLLSHGVANLIQDRLLASSDKH 1081

Query: 1049 VADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFR 1108
               +CS CGS+++    H QK A+R               C  C+++  +  V +PYV++
Sbjct: 1082 SFKICSSCGSMIS----HLQKVALRN-------EECSNDICITCRSTSNIVNVHVPYVYK 1130

Query: 1109 YLAAELAAMNIKITLQLGD 1127
            YL +ELAAMNI++   L D
Sbjct: 1131 YLISELAAMNIRLCADLND 1149


>gi|326517304|dbj|BAK00019.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1194

 Score =  858 bits (2218), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/1178 (41%), Positives = 686/1178 (58%), Gaps = 130/1178 (11%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR++  SY+G     +E       +         G  P+M+ + +C+L+    +KL  ++
Sbjct: 54   CRESATSYSGSFKGSIEVTIEGKVNAQYVIPVKLGDLPIMVMSSKCNLRNLAPKKLAEME 113

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EE+ E+GGYFI+NG+ERV R + + ++NY +++ RS+FR+R   Y+DK V ++C +KD +
Sbjct: 114  EESNEVGGYFIVNGIERVIRLLQIQRRNYAVAIERSTFRNRGNNYSDKGVAMKCTKKDLT 173

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            S T+ L+YL NG   L F L+ +E+LLPV +V K+L++ +D E+F+ +            
Sbjct: 174  SATITLHYLNNGCATLRFVLRKQEFLLPVILVAKSLMNISDKELFDRIV----------G 223

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
              + +  ++ R++++L + +  +L +  +CL ++G  F+ ++      S       +I+ 
Sbjct: 224  ENLDNTFLTTRIELLLRDYKQYNLHSMNECLAYLGSLFRNLLGVTSKYSDLETGILLIKR 283

Query: 278  YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
             +F+H+     K + LIFM++KLFS V    ++DN D+L N ++LLPGHL+ + +KEKLE
Sbjct: 284  NLFIHVESFGGKLDCLIFMIRKLFSFVQGKCINDNADALMNHDLLLPGHLLNMIIKEKLE 343

Query: 338  DWLRKGKKLIQDEIENNGKKFDFFNLANIK--KVMEKNPSKQIGTSIETMLKTGRLATQT 395
            + L   K L+  +      KF+   L N K  + +       IG  I T L +G + + +
Sbjct: 344  ESLTASKGLVIRDSRVMKGKFEAECLKNNKYFQRLCDRVCGNIGAKIATFLSSGNVVSSS 403

Query: 396  GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTP 455
            GLDL Q++G+T+ AERLN  RF S F++VHRG  F  ++TT+VRKLLPESWGFLCPVHTP
Sbjct: 404  GLDLMQKSGFTIIAERLNLFRFFSHFQSVHRGQFFTTMKTTTVRKLLPESWGFLCPVHTP 463

Query: 456  DGEPCGLLNHMTSTCRVASYYDSRG---------------NIRDFSKMRTSILRVLIGVG 500
            DG PCGLLNH+     + SY  S+                N+ D    ++ +  VL+ +G
Sbjct: 464  DGAPCGLLNHLAKDAVILSYPPSKKPPITTTHPVAQPSAVNL-DLLCSKSYLQEVLVSLG 522

Query: 501  MIPSLPKLVKSGPPAV------LSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPD 554
            M   +  L      A+      LSVL+DG   G +   +   VVA LRR+K  A      
Sbjct: 523  M--QISGLGNYDGQAIFNERESLSVLIDGVFAGFVQKEKAPSVVAQLRRMKSLAKYGRRA 580

Query: 555  DL--------EVGYVP---LSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGP 603
            DL        E+G++P       G YPG+Y+FT   +  RPV N+      ++ +E IGP
Sbjct: 581  DLPYILEPTTEIGFIPKLEFDNLGPYPGIYIFTQHGRMSRPVLNL-----HTKEVEWIGP 635

Query: 604  FEQVFMEIRCPDGGDGGRRNAFPA---------------THEEIHPTGMLSVVANLTPYS 648
             EQVFMEI C       + + FP+               +H E+ PT MLS +A+LTPYS
Sbjct: 636  MEQVFMEIACV------KEDIFPSPFKTASSTSVEDEGTSHIELSPTVMLSQIASLTPYS 689

Query: 649  DHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPT 708
            D+NQSPRNMYQCQM KQTMG    A KFRAD KLY +   Q PIV+T T+ +Y +DEYP 
Sbjct: 690  DYNQSPRNMYQCQMGKQTMGTPTHAFKFRADNKLYRILNVQAPIVQTKTHGEYFMDEYPQ 749

Query: 709  GTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVD-------- 760
            G NA+VAV++YTGYDMEDAMI+NK++ +RG  HG +Y+T  +DL ++  K          
Sbjct: 750  GCNAVVAVISYTGYDMEDAMIINKAAYERGFGHGCVYKTMFVDLEEEEVKAANLTSRPSF 809

Query: 761  -----RGQKLFRRNKDAKSLHSVI---------------DSDGLPYVGQMIHPGEPYCSI 800
                 +G  +        SL+S +               D DGLP  G ++H GEP   +
Sbjct: 810  KFSNFKGVAMTNNQTSKISLNSPVKHDAIFGGDLVCESLDYDGLPAEGNLVHYGEPIVCL 869

Query: 801  YDKTTNSWRTNSRKGSESVFVDYVAV-------DMKNSKNLPQKANIRFRHTRNPIIGDK 853
             D +T + +  S K  E  ++D V V       + K  ++  ++  I  R+ RNPIIGDK
Sbjct: 870  IDVSTGNHKIISHKDHEPAYIDAVRVIGLGSSTNTKVERSNFRRVAITLRYRRNPIIGDK 929

Query: 854  FSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLH 913
            FSSRHGQKG  S LWP  +MPFS  +GM PD++INPHAFPSRMTI ML+ES+A K G++H
Sbjct: 930  FSSRHGQKGTLSVLWPQENMPFSE-SGMSPDVLINPHAFPSRMTIGMLIESMAGKAGAIH 988

Query: 914  GKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTC 973
            G F DATPF              E + ++D +GE LR CG+ Y+G E LY+G+ G  +  
Sbjct: 989  GMFQDATPFQ-----------FHEERKVIDYVGEQLRACGYQYYGSEPLYNGLTGKVMQA 1037

Query: 974  EIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGA 1033
            +IFIG V+YQRLRHMVSDK QVRSTG +  ITRQP+KGRK+ GGIR GEMERD+LL+HG 
Sbjct: 1038 DIFIGLVFYQRLRHMVSDKSQVRSTGPVTAITRQPVKGRKKHGGIRLGEMERDALLSHGV 1097

Query: 1034 AYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIR------EIGGLPPARAPKKV 1087
            A+ L DRL  CSD HVA VCS CG++L+  F    K +I       E  G    R   + 
Sbjct: 1098 AFCLQDRLMNCSDSHVAFVCSQCGNLLS-IFAQSIKNSIGQSTMRFENTGF---RTQMQQ 1153

Query: 1088 TCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
            TCH C+ S+ +  V +PYVFRYL  ELA M IK+TL++
Sbjct: 1154 TCHECKNSEFVRPVYLPYVFRYLTNELAGMGIKLTLEI 1191


>gi|402086731|gb|EJT81629.1| DNA-directed RNA polymerase I subunit RPA2 [Gaeumannomyces graminis
            var. tritici R3-111a-1]
          Length = 1240

 Score =  858 bits (2218), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/1146 (42%), Positives = 677/1146 (59%), Gaps = 113/1146 (9%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAG-SPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
            CR+   +Y GKL A  EFQ  D      VRE    GQ P+M+K+ RCHL+     +LV  
Sbjct: 118  CRERHATYRGKLSATFEFQINDEEPQEFVRE---IGQMPIMVKSNRCHLEENSPAQLVER 174

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
            KEE+ E+GGYFI+NG E++ R ++L ++N+P+++ R SF++R   YT   +++RCVR D+
Sbjct: 175  KEESEELGGYFIVNGNEKIIRLLLLNRRNFPLAINRPSFQNRGPSYTPYGIIMRCVRPDE 234

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
            +S T  L+YL +G+V   F  +  EYL+PV ++LKALV+TND EIF  L      K    
Sbjct: 235  TSQTNVLHYLNDGNVTFRFSWRKNEYLVPVMMILKALVETNDREIFEGLCGPPGSK---- 290

Query: 217  KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
               V +  +++RV+++L   +   L ++ +   ++GE F+ V+   ++ S+Y V    +R
Sbjct: 291  --GVENSFLTDRVELLLRTYKAYGLYSKSKTRAYLGEKFRVVLGVPETMSHYEVGTEFLR 348

Query: 277  DYIFVHL-------NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
              + VH+         ++DKF +L+ M++KL++LV      DNPD++QNQEILL G L  
Sbjct: 349  KIVLVHIGSVAVTEQQDSDKFRMLLVMMRKLYALVAGECAVDNPDAIQNQEILLGGFLYG 408

Query: 330  IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKV---MEKNPSKQIGTSIETML 386
            + L+E+LE+ L    +L+  +         F + A  K+    + +  ++ IG S+E  L
Sbjct: 409  MILRERLEELLNTHLRLVLRDFHRRSPANTFTSAAFAKEFPANIFRRTNENIGNSLEYFL 468

Query: 387  KTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESW 446
             TG L + +GLDLQQ +G+ V AE+LNFLRFIS FR VHRG+ FA L+TT+VRKLLPESW
Sbjct: 469  STGNLLSPSGLDLQQTSGFVVVAEKLNFLRFISHFRMVHRGSFFAQLKTTTVRKLLPESW 528

Query: 447  GFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLP 506
            GFLCPVHTPDG PCGLLNH+  TC++ +  DS     D S    +I R+   +G++ +  
Sbjct: 529  GFLCPVHTPDGSPCGLLNHLAHTCKIMT--DSV----DVS----AIPRLAAELGVVNTSS 578

Query: 507  KLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLG 566
               +      + V+LDG+++G     +  ++   LR  KV  +  +P +LE+G VP S G
Sbjct: 579  AATEES----VVVMLDGKILGWCSPGQSRRIADTLRYWKVEKSHGVPVELEIGLVPPSNG 634

Query: 567  GAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC--PDGGDGGRRNA 624
            G YPG+Y+ +   + VRPV+ + L  E+      +G  EQ +M I C  P+   G     
Sbjct: 635  GTYPGIYMASQASRMVRPVKYLPLEKED-----FVGTQEQPYMSIACTEPEIVSG----- 684

Query: 625  FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
              +TH E  PT MLS++AN+TP+SD NQSPRNMYQCQM KQTMG    AL+ R D K+Y 
Sbjct: 685  -ESTHVEFDPTNMLSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPGAALRHRTDNKMYR 743

Query: 685  LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI 744
            LQT QTPIVR   + +YG D +P GTNA+VAV++YTGYDM+DAMI+NKS+ +RG  HG I
Sbjct: 744  LQTGQTPIVRAPLHNEYGFDNFPNGTNAVVAVISYTGYDMDDAMIINKSAHERGFGHGTI 803

Query: 745  YQTETIDLSDDG--NKVDRGQKLFRRNKDAK---SLHSVIDSDGLPYVGQMIHPGEPYCS 799
            Y+T+ I L DD          KLF              ++D DGLP++G+ +  G+   +
Sbjct: 804  YKTKKITLKDDSRTRSAKNVTKLFGFAPSGAVKGWQREMLDEDGLPWIGREVKEGDVIAA 863

Query: 800  IYDKTTN-SWRTNSRKG---------SESVFVDYV-AVDMKNSKNLPQKANIRFRHTRNP 848
             +  + + S +  +R G         SE+ +++ V  +  +N     Q  +I+FR  R+P
Sbjct: 864  WHTVSADYSDQLMNRDGITHFEKYKDSETAYIEEVRLIGNENGVEPLQTVSIKFRIPRSP 923

Query: 849  IIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
            IIGDKFSSRHGQKGV SQ WP IDMPFS  +GM+PD+IINPHAFPSRMTI M +ES+A K
Sbjct: 924  IIGDKFSSRHGQKGVASQKWPMIDMPFSE-SGMQPDVIINPHAFPSRMTIGMFVESLAGK 982

Query: 909  GGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYG 968
             G+LHG   D+TPF             DE  +  +  G  L   G+N+HG E +YSG+ G
Sbjct: 983  SGALHGLAQDSTPFR-----------FDEEDTAAEYFGHQLMKAGYNFHGNEPMYSGITG 1031

Query: 969  TELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSL 1028
             EL  +I+IG VYYQRLRHMV+DKFQVR+TG +   T QPIKGRKRGGGIR GEMERD+L
Sbjct: 1032 QELAADIYIGVVYYQRLRHMVNDKFQVRTTGPVVPTTGQPIKGRKRGGGIRVGEMERDAL 1091

Query: 1029 LAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVT 1088
            LAHG A+LL DRL  CSDY  + +C  CG     TF+  Q      +G     R    V 
Sbjct: 1092 LAHGTAFLLQDRLLNCSDYSRSWICRSCG-----TFLSVQPTVSPFVG----KRKINTVR 1142

Query: 1089 CHACQT-----------------------------SKGMETVAMPYVFRYLAAELAAMNI 1119
            C  C T                                   V +P   ++L  ELAAM I
Sbjct: 1143 CRGCATRLDKLDDDVDVAKLDGEIWEDGQGNQWIGGDNTTLVVVPGALKFLDVELAAMGI 1202

Query: 1120 KITLQL 1125
            K+  ++
Sbjct: 1203 KLKYRV 1208


>gi|225681121|gb|EEH19405.1| DNA-directed RNA polymerase I polypeptide 2 [Paracoccidioides
            brasiliensis Pb03]
          Length = 1242

 Score =  858 bits (2216), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/1186 (41%), Positives = 682/1186 (57%), Gaps = 164/1186 (13%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDA-GSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
             CR+   +Y G+L A +E++  +      VRE    GQ P+ML++ RC+L+    ++LV 
Sbjct: 126  ECRERHATYRGRLRARLEYRINNGEWKESVRE---LGQVPIMLRSNRCYLEKCSPEQLVQ 182

Query: 96   LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
             KEE+ E+GGYF++NG E++ R +I+ ++N+PM+++RSSF  R   YT   + IR VR D
Sbjct: 183  HKEESEELGGYFVVNGNEKLIRMLIVGRRNFPMAIIRSSFMKRGPTYTKFGIQIRSVRPD 242

Query: 156  QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
            Q+S T  L+YL +G+V   F  +  EYL+PV ++LK LV TND +IF  L       ++ 
Sbjct: 243  QTSQTNFLHYLSDGNVTFRFTWRKNEYLVPVVMILKGLVQTNDRDIFERLV-----GHEG 297

Query: 216  EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
             +G + +  V++RV+++L   +   +  R     ++GE F+PV+         AV    +
Sbjct: 298  SEG-IKNSFVTDRVELLLRTYKGYGIHGRDDIRAYLGEKFRPVLGMPTDIPDEAVGVEFL 356

Query: 276  RDYIFVHLND-------NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
            R  +  HL +       +NDKFN+++FM++KL++LV      DNPD++ NQE+LL G L 
Sbjct: 357  RKVVLPHLGNHNVTDSQDNDKFNMILFMIRKLYTLVAGDCAPDNPDAVSNQEVLLGGFLY 416

Query: 329  TIYLKEKLEDWLRKGKKLIQD-EIENNGKKF--DFFNLANIKKVMEKNPSKQIGTSIETM 385
             + LKE+LE+WLR    + QD  ++N   +F    F    + +++ +  ++ IG ++E  
Sbjct: 417  GMLLKERLEEWLRSFGPIAQDWSVKNQNARFIDPKFEKEFLSRIVART-NENIGGALEYF 475

Query: 386  LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
            L TG L + TGLDLQQ +GYTV AE++NF RFIS FR +HRG+ FA L+TT+VRKLLPES
Sbjct: 476  LSTGNLVSPTGLDLQQPSGYTVMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPES 535

Query: 446  WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
            WGFLCPVHTPDG PCGLLNH+   C                K+ TS L V          
Sbjct: 536  WGFLCPVHTPDGSPCGLLNHLAHKC----------------KIETSNLDV---------- 569

Query: 506  PKLVKSGPPAVLSVL-----------------LDGRVVGVIPSSEIEKVVAHLRRLKVSA 548
                 SG P ++S L                 +DGR++G     +   +   LR  KV  
Sbjct: 570  -----SGVPQIISNLGVTSESSVSLEESVVVQMDGRILGYCSPKQARIISDTLRYWKVEG 624

Query: 549  ASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVF 608
               +P +LE+GYVP S  G YPG+YLF+   + VRPV+ + L       ++ +GPFEQ F
Sbjct: 625  NKSLPVELEIGYVPNSNRGQYPGIYLFSQCARMVRPVKYLPL-----DKLDYVGPFEQPF 679

Query: 609  MEIRC-PDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTM 667
            MEI C P     G      +TH E  PT +LS+VAN+TP+SD NQSPRNMYQCQM KQ M
Sbjct: 680  MEIACVPSDIISG-----VSTHVEFDPTYILSIVANMTPFSDFNQSPRNMYQCQMGKQAM 734

Query: 668  GFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDA 727
            G    ++++R D KLY LQT QTPIVR   Y  YG+D +P G NA+VAVL+YTGYDM+DA
Sbjct: 735  GTPGTSIQYRTDNKLYRLQTGQTPIVRPPLYNCYGLDNFPNGMNAVVAVLSYTGYDMDDA 794

Query: 728  MILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQ------KLFRRNKDA---KSLHSV 778
            MI+N+S+ DRG   G IY+T+   L DD     RG+      KLF               
Sbjct: 795  MIINRSAHDRGFGWGTIYKTKVYSL-DDKESRGRGKAKREIAKLFGFAPGGLIKGEWRQT 853

Query: 779  IDSDGLPYVGQMIHPGEPYCSI----YDKTTNSWRTNSR-------KGSESVFVDYVAVD 827
            +D DGLP++G  +  G    +     +D  +NS+    R       K +E  ++D V + 
Sbjct: 854  LDEDGLPHIGVRVTEGSIVAAWHTVRFDAVSNSYINIDRQTHFLKYKDTEEGYIDSVRIL 913

Query: 828  MKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLI 886
               +   P Q  +I++R  R P+IGDKFSSRHGQKGVCSQLWP IDMPFS  +G++PD+I
Sbjct: 914  GSETGGDPCQAISIKYRIPRKPVIGDKFSSRHGQKGVCSQLWPAIDMPFS-ESGIQPDVI 972

Query: 887  INPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELG 946
            INPHAFPSRMTI M +ES+A K G+LHG   D+TPF  S + T GD             G
Sbjct: 973  INPHAFPSRMTIGMFVESLAGKSGALHGLAQDSTPFRFSEEHTAGDF-----------FG 1021

Query: 947  EMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITR 1006
            E LR  G+N+HG E +YSG+ G E   +I++G VYYQRLRHMV+DKFQVR+TG ++ +T 
Sbjct: 1022 EQLRKAGYNFHGNEPMYSGITGREFAADIYLGVVYYQRLRHMVNDKFQVRTTGPVNALTG 1081

Query: 1007 QPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLT----- 1061
            QP+KGR +GGGIR GEMERD+LLAHGAA+LL DRL  CSD   + +C  CGS L+     
Sbjct: 1082 QPVKGRAKGGGIRVGEMERDALLAHGAAFLLQDRLMNCSDITRSWICRTCGSFLSTQVAV 1141

Query: 1062 ATFIHPQKR------------------AIREIGGLPPARAPKKVTCHACQTSKGME---- 1099
            + ++ P K                   A+  +GG         V C  C      +    
Sbjct: 1142 SKYVAPSKNPAMAAAAKSSSGLVKPGGAVSALGG-----TSGIVRCRRCAREAVFDDPRA 1196

Query: 1100 ------------------TVAMPYVFRYLAAELAAMNIKITLQLGD 1127
                               VA+P V +YL  ELAAM +K+T ++ +
Sbjct: 1197 EVWEDGEGRRFVGGDDTTVVAVPGVLKYLDVELAAMGVKMTFKVNN 1242


>gi|299748143|ref|XP_001837493.2| DNA-directed RNA polymerase I polypeptide 2 [Coprinopsis cinerea
            okayama7#130]
 gi|298407835|gb|EAU84409.2| DNA-directed RNA polymerase I polypeptide 2 [Coprinopsis cinerea
            okayama7#130]
          Length = 1203

 Score =  857 bits (2214), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/1146 (41%), Positives = 677/1146 (59%), Gaps = 126/1146 (10%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
             R+   SY G++   V+  + D          + G  P+M+++ RC+L+   S +LV   
Sbjct: 125  ARERLTSYRGRMT--VKLCWTDPSGQKHEMPKDCGLIPIMVRSVRCNLRTLSSAELVQRH 182

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EE  E GGYF++NG ER+ R +ILP++N+ +S++R SF +R   YT  AV IRCVR DQ+
Sbjct: 183  EEPEEFGGYFVINGNERLIRYLILPRRNHVISLIRPSFSNRGPSYTQYAVQIRCVRPDQT 242

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC-YDEKYKKE 216
            SVT  L+YL NGS    F  + +EY++P+ ++LKALV+ +D EIF  +    YD  +   
Sbjct: 243  SVTNTLHYLANGSAMFRFTWRKQEYVIPIMLILKALVNASDKEIFEGVVMQDYDNTF--- 299

Query: 217  KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
                    +++RV+++L   +  ++ T  QCL+++G+ F+ V++  +  +  A+   +I+
Sbjct: 300  --------LTDRVELLLRSFKMYTMHTGEQCLEYLGDKFRVVLNLPEDWTNAAIGAWLIQ 351

Query: 277  DYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
              + VHL    DKF +L++ML+K++SL+     +DNPDS Q+QE+LLPG L  + +KE++
Sbjct: 352  KLVLVHLETPRDKFRMLLYMLRKMYSLISGECCADNPDSPQHQEVLLPGSLYGMIIKERM 411

Query: 337  EDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
            E+ L   +  I  ++   G   DF +     KV+ K  +  IG+ +   L TG L + TG
Sbjct: 412  EEILNAIRATIAMDVRT-GANVDFHDKKYFAKVLTK-VNFDIGSKMSNFLATGNLVSPTG 469

Query: 397  LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
            LDLQQ +G+T+ AE+LN+ R+IS FR +HRGA FA L+TT+VRKLLPE+WGFLCPVHTPD
Sbjct: 470  LDLQQASGFTIVAEKLNWQRYISHFRCIHRGAFFAELKTTTVRKLLPEAWGFLCPVHTPD 529

Query: 457  GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAV 516
            G PCGLLNH++ TCR+ +   +  +I +          +L   GM  S    +       
Sbjct: 530  GSPCGLLNHLSRTCRIITSPLTVAHIPN----------LLAAHGMTQSFATSIDGR--KN 577

Query: 517  LSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFT 576
            L V LDGRV+G        ++  +LR  K      +P DLE+G+VP S GG YPGL+LF+
Sbjct: 578  LCVQLDGRVIGWARPVVAAQLATNLRIWKTEGKYEVPLDLEIGFVPESHGGQYPGLFLFS 637

Query: 577  SPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEEIHPT 635
            +  +F+RPV+ ++   ++      IG FEQV+M I C P+  + G      +TH E  PT
Sbjct: 638  TKARFMRPVKYLANGKDDQ-----IGSFEQVYMNIACTPEEIEEGV-----STHVEHDPT 687

Query: 636  GMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRT 695
              LS++AN+TP+SD NQSPRN+YQCQM KQTMG    A++ R D KLY LQT Q+PIVR 
Sbjct: 688  NFLSILANMTPFSDFNQSPRNIYQCQMGKQTMGTPATAIQHRTDNKLYRLQTGQSPIVRP 747

Query: 696  NTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD- 754
            + +  YG+D +P GTNA+VAV++YTGYDMEDAMILNKS+ +RG  +G IY+++ IDL + 
Sbjct: 748  SLHNTYGMDAFPNGTNAVVAVISYTGYDMEDAMILNKSAHERGFTYGTIYKSQIIDLKEV 807

Query: 755  -DGNKVDRGQKL-------FRRNKD-AKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTT 805
               +K      L        R   D A      +D DGLP+ G  + PG+P  +  D TT
Sbjct: 808  RGASKSSSTPTLHFGIAGDIRLTGDNAHPCAEFVDKDGLPFPGVRVKPGDPLAAYIDDTT 867

Query: 806  NSWRTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQKGVC 864
               R    KG E+ +VD V +   ++ +   QK ++  R  R P+IGDKFSSRHGQKGVC
Sbjct: 868  GRTRFVKYKGDETAYVDQVRLLGSDAGDSELQKVHVTLRIPRAPVIGDKFSSRHGQKGVC 927

Query: 865  SQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFAN 924
            SQ WP IDMPFS  +G++PD+IINPHAFPSRMTI ML+ES+A K G++HG   DATPF  
Sbjct: 928  SQKWPAIDMPFSE-SGIQPDVIINPHAFPSRMTIGMLVESMAGKAGAMHGLAQDATPF-- 984

Query: 925  SVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQR 984
              K T  DT        +D  G+ L   G+NY+G E +YSG+ G E   +I+ G VYYQR
Sbjct: 985  --KFTEEDTA-------IDYFGKQLLAAGYNYYGNEPMYSGITGQEFAADIYFGVVYYQR 1035

Query: 985  LRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTC 1044
            LRHMV DKFQ                GRKR GGIRFGEMERD+L+AHG ++LL DRL  C
Sbjct: 1036 LRHMVLDKFQ----------------GRKRAGGIRFGEMERDALIAHGTSFLLQDRLMNC 1079

Query: 1045 SDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPAR----APKKVTCHAC-------- 1092
            SDY  A VC  CGS+++  +   +  ++ E+   P  R     P    C  C        
Sbjct: 1080 SDYSTAWVCRTCGSLISLGY---EDVSLGEMVSGPGQRLKPTGPGGEYCRICRAAAEEEE 1136

Query: 1093 -------------------------------QTSKG--METVAMPYVFRYLAAELAAMNI 1119
                                             SKG  ++ VA+PYVFRYL AELA+M I
Sbjct: 1137 ERERRAIQTGQHLQRPQADVTVAISSEHVLNSASKGGDLDVVAVPYVFRYLCAELASMGI 1196

Query: 1120 KITLQL 1125
             ++L++
Sbjct: 1197 AVSLEV 1202


>gi|443686693|gb|ELT89887.1| hypothetical protein CAPTEDRAFT_116144, partial [Capitella teleta]
          Length = 1114

 Score =  857 bits (2214), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/1177 (41%), Positives = 691/1177 (58%), Gaps = 127/1177 (10%)

Query: 12   LRELVRHHIESFDYMLDEGLSEMFD----------------------------------- 36
            L++L + HI+SF+Y+L EGL+                                       
Sbjct: 1    LQDLTKPHIDSFNYVLKEGLNTAVKRIEPLEFALPSGQRISLSIQNASILNPMVPQSNIY 60

Query: 37   ---------HCRQAKISYTGKLMADVEFQYLDAGS--PVVRERFNFGQFPVMLKTRRCHL 85
                      CR+  I+Y GKL  ++ +  +D     PV R     G  P+M+K+  C++
Sbjct: 61   ATTLRVFPAECRERGITYKGKLTLELNWS-VDGRKFGPVERA---IGDVPIMVKSNACNI 116

Query: 86   QGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDK 145
               +  +LV   EE  EMGGYFI+NG E+V R +I+P++NYPM++ R S++ R   YT+ 
Sbjct: 117  VKMNPAELVQHGEEIQEMGGYFIVNGNEKVLRMLIMPRRNYPMALSRGSWKSRGPQYTEF 176

Query: 146  AVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHL 205
             V +R V  DQ+S  L L+YL +G+  L F L+ +++ +P+ ++L+ALVD  D  I++ L
Sbjct: 177  GVQMRTVADDQTSTNLVLHYLNDGNAMLCFVLERQQFFVPLAVMLRALVDQPDHFIYSEL 236

Query: 206  TCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSE 265
                ++     KG + S         +L ++Q+  L+TR + LQ++G+ F+  +      
Sbjct: 237  VKGREDN-SYYKGCIAS---------MLRQMQEEGLSTRAKTLQYLGKTFRVKLGLPDWY 286

Query: 266  SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPG 325
            +   V E +IR  I +HL DN DKFN L+FM QKL++L  H   +++ D+   QE L+ G
Sbjct: 287  TDLQVGEFLIRSCICIHLKDNVDKFNTLVFMTQKLYALTKHGCAAESADNPMFQEALVAG 346

Query: 326  HLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFF-NLANIKKVMEKNPSKQIGTSIET 384
            HL  + LK++L+ WL+  K +I  ++ + GK  D   N  +  + M    ++ +  ++E 
Sbjct: 347  HLYLMVLKDRLKTWLQSLKSVILKKV-SMGKGVDMLTNPTSFCECMRM--TQDVTKAMEF 403

Query: 385  MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPE 444
            +L TG LAT++ L L Q  G  V A++LNF R+IS FR +HRGA F+ +RTT+VR+LLPE
Sbjct: 404  LLATGNLATKSTLGLMQMKGLAVLADKLNFYRYISHFRCIHRGAFFSEMRTTAVRRLLPE 463

Query: 445  SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
            ++GF+CPVHTPDG PCGLLNH+T+ C+V+            S + + + ++L  +GM+P 
Sbjct: 464  AYGFICPVHTPDGSPCGLLNHLTAECQVSC--------APPSNLSSQLPQLLSSLGMLPM 515

Query: 505  LPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAAS--VIPDDLEVGYVP 562
               L  +      +VLLDG+V+G I    +  V   LR LKV+  +   +   LE+G V 
Sbjct: 516  DAPLTAAS--EYYNVLLDGKVLGRIHQDSVSNVADRLRALKVTGGNPPQVSPLLEIGLVM 573

Query: 563  LS-LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGR 621
             +     YPGL+LF+S  +F+RPV N+          E++G FEQV+M+I C    +   
Sbjct: 574  RTPQASQYPGLFLFSSCARFIRPVTNLL-----HDKREMVGSFEQVYMDI-CVTASE--- 624

Query: 622  RNAFPA--THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRAD 679
              A P   TH+++  T MLS +AN TP+SD NQSPRNMYQCQM KQTMG  + AL  RAD
Sbjct: 625  --AIPGVTTHQDLCETSMLSTLANFTPFSDFNQSPRNMYQCQMGKQTMGTPLHALVHRAD 682

Query: 680  QKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGM 739
             KLY +QTPQ+P+VR   Y  Y +DEYP GTNAIVAV++YTGYDMEDAMI+NKSS +RG 
Sbjct: 683  NKLYRIQTPQSPMVRPKVYDDYDVDEYPNGTNAIVAVISYTGYDMEDAMIINKSSYERGF 742

Query: 740  CHGQIYQTETIDL------SDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHP 793
             HG +Y++E   L          + V  G  L  ++         +D+DGLP++G+ +  
Sbjct: 743  AHGSVYKSEVFILLLQFFTLSCHSGVKPGDTLAEQH---------LDADGLPFIGRYLTS 793

Query: 794  GEPYCSIYDKTTNSWRTNSRKGSESVFVDYV---AVDMKNSKNLPQKANIRFRHTRNPII 850
            G PY S  +  T   R    K  E  +V  +   A D+ N++   QK  I  R  RNPII
Sbjct: 794  GSPYYSYINVQTGESRVVKYKYDEPAYVQQIKLLAHDLSNTE--LQKVCIVLRIRRNPII 851

Query: 851  GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGG 910
            GDKFSSRHGQKG+CSQ WP  +MPF+   G+ PD++ NPH FPSRMTI M++ES+A K  
Sbjct: 852  GDKFSSRHGQKGICSQKWPVENMPFTE-GGITPDILFNPHGFPSRMTIGMMIESMAGKSA 910

Query: 911  SLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTE 970
            + HG   DATPF  S           E +  ++  G+ML   G+NY+G E LYSGV G  
Sbjct: 911  AAHGICHDATPFTFS-----------EKQPAIEFFGDMLTEAGYNYYGTERLYSGVNGKL 959

Query: 971  LTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLA 1030
               +IF G VYYQRLRHMVSDKFQVRSTG +D  T QPIKGRKRGGGIRFGEMERD+L+A
Sbjct: 960  FEADIFTGVVYYQRLRHMVSDKFQVRSTGAVDVTTHQPIKGRKRGGGIRFGEMERDALIA 1019

Query: 1031 HGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCH 1090
            HGA++LL+DRL  CSD  +A VC  CGS+L+   I  QK     +       + +   C 
Sbjct: 1020 HGASFLLNDRLFNCSDRSLAHVCVKCGSLLSP-LIQVQKGKKYGV----QFESSQAWKCC 1074

Query: 1091 ACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
             CQ+   ++ +A+PYV RYL AELAAMNIK  L + D
Sbjct: 1075 VCQSKDSVKVIAVPYVLRYLVAELAAMNIKTNLDIRD 1111


>gi|226292175|gb|EEH47595.1| DNA-directed RNA polymerase I subunit RPA2 [Paracoccidioides
            brasiliensis Pb18]
          Length = 1242

 Score =  857 bits (2213), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/1170 (41%), Positives = 685/1170 (58%), Gaps = 132/1170 (11%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDA-GSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
             CR+   +Y G+L A +E++  +      VRE    GQ P+ML++ RC+L+    ++LV 
Sbjct: 126  ECRERHATYRGRLRARLEYRINNGEWKESVRE---LGQVPIMLRSNRCYLEKCSPEQLVQ 182

Query: 96   LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
             KEE+ E+GGYF++NG E++ R +I+ ++N+PM+++RSSF  R   YT   + IR VR D
Sbjct: 183  HKEESEELGGYFVVNGNEKLIRMLIVGRRNFPMAIIRSSFMKRGPTYTKFGIQIRSVRPD 242

Query: 156  QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
            Q+S T  L+YL +G+V   F  +  EYL+PV ++LK LV TND +IF  L       ++ 
Sbjct: 243  QTSQTNFLHYLSDGNVTFRFTWRKNEYLVPVVMILKGLVQTNDRDIFERLV-----GHEG 297

Query: 216  EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
             +G + +  V++RV+++L   +   +  R     ++GE F+PV+         AV    +
Sbjct: 298  SEG-IKNSFVTDRVELLLRTYKGYGIHGRDDIRAYLGEKFRPVLGMPTDIPDEAVGVEFL 356

Query: 276  RDYIFVHLND-------NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
            R  +  HL +       +NDKFN+++FM++KL++LV      DNPD++ NQE+LL G L 
Sbjct: 357  RKVVLPHLGNHNVTDSQDNDKFNMILFMIRKLYTLVAGDCAPDNPDAVSNQEVLLGGFLY 416

Query: 329  TIYLKEKLEDWLRKGKKLIQD-EIENNGKKF--DFFNLANIKKVMEKNPSKQIGTSIETM 385
             + LKE+LE+WLR    + Q+  ++N   +F    F    + +++ +  ++ IG ++E  
Sbjct: 417  GMLLKERLEEWLRSFGPIAQEWSVKNQNARFIDPKFEKEFLSRIVART-NENIGGALEYF 475

Query: 386  LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
            L TG L + TGLDLQQ +GYTV AE++NF RFIS FR +HRG+ FA L+TT+VRKLLPES
Sbjct: 476  LSTGNLVSPTGLDLQQPSGYTVMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPES 535

Query: 446  WGFLCPVHTPDGEPCGLLNHMTSTCRV-ASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
            WGFLCPVHTPDG PCGLLNH+   C++  S  D  G           + +++  +G+   
Sbjct: 536  WGFLCPVHTPDGSPCGLLNHLAHKCKIETSNLDVSG-----------VPQIISNLGVTSE 584

Query: 505  LPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS 564
                ++      + V +DGR++G     +   +   LR  KV     +P +LE+GYVP S
Sbjct: 585  SSVSLE----ESVVVQMDGRILGYCSPKQARIISDTLRYWKVEGNKSLPVELEIGYVPNS 640

Query: 565  LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRN 623
              G YPG+YLF+   + VRPV+ + L       ++ +GPFEQ FMEI C P     G   
Sbjct: 641  NRGQYPGIYLFSQCARMVRPVKYLPL-----DKLDYVGPFEQPFMEIACVPSDIISG--- 692

Query: 624  AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
               +TH E  PT +LS+VAN+TP+SD NQSPRNMYQCQM KQ MG    ++++R D KLY
Sbjct: 693  --VSTHVEFDPTYILSIVANMTPFSDFNQSPRNMYQCQMGKQAMGTPGTSIQYRTDNKLY 750

Query: 684  HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
             LQT QTPIVR   Y  YG+D +P G NA+VAVL+YTGYDM+DAMI+N+S+ DRG   G 
Sbjct: 751  RLQTGQTPIVRPPLYNCYGLDNFPNGMNAVVAVLSYTGYDMDDAMIINRSAHDRGFGWGT 810

Query: 744  IYQTETIDLSDDGNKVDRGQ------KLFRRNKDA---KSLHSVIDSDGLPYVGQMIHPG 794
            IY+T+   L DD     RG+      KLF               +D DGLP++G  +  G
Sbjct: 811  IYKTKVYSL-DDKESRGRGKAKREIAKLFGFAPGGLIKGEWRQTLDEDGLPHIGVRVTEG 869

Query: 795  EPYCSI----YDKTTNSWRTNSR-------KGSESVFVDYVAVDMKNSKNLP-QKANIRF 842
                +     +D  +NS+    R       K +E  ++D V +    +   P Q  +I++
Sbjct: 870  SIVAAWHTVRFDAVSNSYINIDRQTHFLKYKDTEEGYIDSVRILGSETGGDPCQAISIKY 929

Query: 843  RHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLL 902
            R  R P+IGDKFSSRHGQKGVCSQLWP IDMPFS  +G++PD+IINPHAFPSRMTI M +
Sbjct: 930  RIPRKPVIGDKFSSRHGQKGVCSQLWPAIDMPFS-ESGIQPDVIINPHAFPSRMTIGMFV 988

Query: 903  ESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVL 962
            ES+A K G+LHG   D+TPF  S + T GD             GE LR  G+N+HG E +
Sbjct: 989  ESLAGKSGALHGLAQDSTPFRFSEEHTAGDF-----------FGEQLRKAGYNFHGNEPM 1037

Query: 963  YSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGE 1022
            YSG+ G E   +I++G VYYQRLRHMV+DKFQVR+TG ++ +T QP+KGR +GGGIR GE
Sbjct: 1038 YSGITGREFAADIYLGVVYYQRLRHMVNDKFQVRTTGPVNALTGQPVKGRAKGGGIRVGE 1097

Query: 1023 MERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLT-----ATFIHPQKR------- 1070
            MERD+LLAHGAA+LL DRL  CSD   + +C  CGS L+     + ++ P K        
Sbjct: 1098 MERDALLAHGAAFLLQDRLMNCSDITRSWICRTCGSFLSTQVAVSKYVAPSKNPAMAAAA 1157

Query: 1071 -----------AIREIGGLPPARAPKKVTCHACQTSKGME-------------------- 1099
                       A+  +GG         V C  C      +                    
Sbjct: 1158 KSSSGLVKPGGAVSALGG-----TSGIVRCRRCAREAVFDDPRAEVWEDGEGRRFVGGDD 1212

Query: 1100 --TVAMPYVFRYLAAELAAMNIKITLQLGD 1127
               VA+P V +YL  ELAAM +K+T ++ +
Sbjct: 1213 TTVVAVPGVLKYLDVELAAMGVKMTFKVNN 1242


>gi|452981615|gb|EME81375.1| hypothetical protein MYCFIDRAFT_58897 [Pseudocercospora fijiensis
            CIRAD86]
          Length = 1209

 Score =  856 bits (2212), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/1136 (42%), Positives = 678/1136 (59%), Gaps = 94/1136 (8%)

Query: 39   RQAKISYTGKLMADVEFQYLD-AGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            R++  SY G+    +E++  D A    VR+   FG+ P+ML++ RCHL+    ++LV+ +
Sbjct: 119  RESHKSYRGRFRGRLEYRVNDGAWKQTVRD---FGELPIMLRSNRCHLEALSPKELVNRR 175

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EE+ E+GGYFI+NG+E++ R +I+ ++N+PM++ R SF +R   YT   V IR VR DQ+
Sbjct: 176  EESDELGGYFIINGVEKLIRMLIVNRRNFPMAIERPSFVNRGAAYTKYGVQIRSVRPDQT 235

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            S T  L+YL +G+V   F  +  EYL+PV ++LKAL +TND +IF  L      K  + K
Sbjct: 236  SQTNVLHYLSDGNVTFRFSWRKNEYLVPVLMILKALTETNDRQIFEGLVGPAGGKDLESK 295

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
                   VS+RV+++L   +  ++ ++ +   ++G  F+ V+      +  A    ++R 
Sbjct: 296  -----QFVSDRVELLLRTYKAYNIHSKAKTRAYLGSKFRVVLGMPDDATDEACGTELLRK 350

Query: 278  YIFVHLN-------DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITI 330
             +  HL        ++ DK  +L+FM++KL++LV+     DNPD++QNQEILLPG L  +
Sbjct: 351  IVLPHLGCYDVTEANDADKARMLLFMIRKLYALVEGECAVDNPDAVQNQEILLPGALYGM 410

Query: 331  YLKEKLEDWLRK-GKKLIQDEIENNGKKFDF--FNLANIKKVMEKNPSKQIGTSIETMLK 387
             +KE++E+WL   G +  +    NN   F    F+     KV+ K  ++ IG  ++  + 
Sbjct: 411  IVKERIEEWLNSIGAQSREYGRTNNWPSFTSAEFDRDFAPKVIRKT-NENIGQGLDYFMA 469

Query: 388  TGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWG 447
            TG L + +GLDLQQ +G+TV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWG
Sbjct: 470  TGNLVSPSGLDLQQVSGFTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWG 529

Query: 448  FLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPK 507
            FLCPVHTPDG PCGLLNH+   C+V +      +  D S +   + ++ +     P+L  
Sbjct: 530  FLCPVHTPDGSPCGLLNHLAHKCKVET------SSTDVSHVPALVAQIGVSSTSEPTLHD 583

Query: 508  LVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGG 567
             V         V LDGRV+G     + + +   LR  KV     +P +LEVGYVPLS GG
Sbjct: 584  SV--------VVQLDGRVLGYCSPKQAKTIADTLRYWKVEGTHNVPKELEVGYVPLSNGG 635

Query: 568  AYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC--PDGGDGGRRNAF 625
             YPG+Y+F+   + +RPV+ + L  E+      +GPFEQ +M I C  P+   G      
Sbjct: 636  QYPGVYMFSQAARMLRPVKYLPLDKED-----FVGPFEQPYMSIACTEPEISSGD----- 685

Query: 626  PATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHL 685
              TH E   T +LS+VAN TP+S+ NQSPRNMYQCQM KQTMG    ALK+R D K Y L
Sbjct: 686  -TTHVEYDVTNILSIVANQTPFSNFNQSPRNMYQCQMGKQTMGTPGTALKYRTDNKSYRL 744

Query: 686  QTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIY 745
            QT QTP+VRT  + +YG+D +P GTNA+VAV++YTGYDM+DAMILNKS+ +RG  +G IY
Sbjct: 745  QTGQTPVVRTPKHNEYGLDNFPNGTNAVVAVISYTGYDMDDAMILNKSAHERGFGYGTIY 804

Query: 746  QTETIDLSDDGNKVDRGQKL-------FRRNKDAKS-LHSVIDSDGLPYVGQMIHPGEPY 797
            + + IDL+++ NK  RG+         F      K+   + +D DG   VG  +  G+  
Sbjct: 805  KAKKIDLAEE-NKAARGRSTVVTHMFGFAPTGIIKAQWRNTLDDDGFAQVGVKVKEGDAI 863

Query: 798  CSIYDKTTNSW-----------RTNSRKGSESVFVDYVA-VDMKNSKNLP-QKANIRFRH 844
             + Y    N                  K +E  +V+ +  +  +   N P Q  ++RFR 
Sbjct: 864  AAFYTVVKNPLTGEYENKDGVTHIQKYKEAEEGYVEEIKLIGNETGSNEPCQAISMRFRI 923

Query: 845  TRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLES 904
             R P+IGDKFSSRHGQKGV SQ WP +DMPF+  +GM+PD+IINPHAFPSRMTI M +ES
Sbjct: 924  PRPPVIGDKFSSRHGQKGVMSQKWPTVDMPFT-ESGMQPDVIINPHAFPSRMTIGMFVES 982

Query: 905  VAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYS 964
            +A K G+LHG   D+TPF    K         E ++ ++  G  L+  G+NY+G E +YS
Sbjct: 983  LAGKSGALHGLAQDSTPFKFKDK---------EGETAIEYFGHQLKRAGYNYYGNEPMYS 1033

Query: 965  GVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEME 1024
            G+ G EL  +I+IG VYYQRLRHMV+DKFQVR+TG +  +T QPIKGR +GGGIR GEME
Sbjct: 1034 GITGEELAADIYIGVVYYQRLRHMVNDKFQVRTTGPVTPLTGQPIKGRAKGGGIRVGEME 1093

Query: 1025 RDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP 1084
            RD+L+AHG ++LL DRL  CSDY  A +C  CGS L+      Q    RE GG    R  
Sbjct: 1094 RDALIAHGTSFLLQDRLMNCSDYTKASICKACGSFLSVQPSSGQYTRRRE-GGRVRCRRC 1152

Query: 1085 KKVTCHACQTSKGME--------------TVAMPYVFRYLAAELAAMNIKITLQLG 1126
             +    +   S+  E               VA+P V +YL  ELAAM I++   +G
Sbjct: 1153 SRRALSSDSKSECWEDHKGDKWFGGDDVTVVAVPGVLKYLDVELAAMGIRMKFDVG 1208


>gi|378731691|gb|EHY58150.1| DNA-directed RNA polymerase I subunit RPA2 [Exophiala dermatitidis
            NIH/UT8656]
          Length = 1219

 Score =  856 bits (2211), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/1155 (42%), Positives = 674/1155 (58%), Gaps = 121/1155 (10%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
             CR+   +Y GKL   ++++ ++ G      R + GQ P+ML++ RCHL+     ++V  
Sbjct: 118  ECRERHATYRGKLRLRLQYR-INNGDWKESVR-DVGQMPIMLRSNRCHLEKFSPAEMVRH 175

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
            KEE+ E+GGYFI+NG E++ R +I  ++NYPM++ R++F  R   ++   + IR VR DQ
Sbjct: 176  KEESEELGGYFIVNGNEKLIRMLIASRRNYPMAIARNAFTARGPTFSKFGIQIRSVRPDQ 235

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
            +S T  L+YL +G+V   F  +  EYL+PV ++LKALV+TND EI   +           
Sbjct: 236  TSQTNVLHYLTDGNVTFRFSWRKNEYLVPVVMILKALVETNDREIAEGIIGT------AS 289

Query: 217  KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
                 S  VS+R +++L   +  +L TR Q L ++G+ F+PV+    +     V E  +R
Sbjct: 290  GSTTPSSFVSDRTELLLRTYKAYNLKTRAQTLAYLGDKFRPVLGNPITMPDEKVGEDFLR 349

Query: 277  DYIFVHLND-------NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
              +  HL +       NNDKF L+++M++KL++L       DNPD++ NQEILL G L  
Sbjct: 350  KIVLPHLGNVDVTPAQNNDKFQLILYMIRKLYALAAGDCTLDNPDAVSNQEILLGGFLYG 409

Query: 330  IYLKEKLEDWLRKGKKLIQDEIE-NNGKKF--DFFNLANIKKVMEKNPSKQIGTSIETML 386
            + LKE + DWL       ++ I   NG  F    F+   + KV+ +  ++ +   +E  L
Sbjct: 410  MILKESIYDWLVSIGGAAREWIRMKNGATFADPSFDTDFLPKVVRRT-NENLAGRLEYFL 468

Query: 387  KTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESW 446
             TG L +QTGLDL Q +G+T+ AE++NF RFIS FR +HRG  FA L+TT+VRKLLPESW
Sbjct: 469  STGNLVSQTGLDLSQTSGFTIVAEKINFYRFISHFRCIHRGTFFAQLKTTTVRKLLPESW 528

Query: 447  GFLCPVHTPDGEPCGLLNHMTSTCRVA-SYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
            GFLCPVHTPDG PCGLLNH+   C V     D+ G  +  S+          G+  +P++
Sbjct: 529  GFLCPVHTPDGSPCGLLNHLAHQCMVQIKRIDTTGVEKAISQF---------GLSPVPAM 579

Query: 506  PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
               VK+     LSV LDGR++G  P    +++   LR  KV+    IP +LE+G+VP S 
Sbjct: 580  D--VKNS----LSVQLDGRILGYCPVKRAQEISQLLRHWKVNGEHGIPTELEIGFVPTSN 633

Query: 566  GGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAF 625
            GG YPGLYLFT P + +RPV+ I+     S  ++ +GPFEQ +M I C D       +  
Sbjct: 634  GGLYPGLYLFTDPSRMLRPVKYIA-----SDKLDYVGPFEQQYMNIACVDA------DII 682

Query: 626  P--ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
            P   TH E  PT +LS++AN+TP+SD NQSPRNMYQCQM+KQ MG     +  R D K Y
Sbjct: 683  PNLTTHIEYKPTNILSILANMTPFSDFNQSPRNMYQCQMSKQAMGTPSSNMMCRTDNKAY 742

Query: 684  HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
             LQT QTP+VR   Y +YG+D +P G NA+VAV++YTGYDM+DAMI+NKS+ +RG   G 
Sbjct: 743  LLQTGQTPVVRPPLYNEYGLDNFPNGMNAVVAVISYTGYDMDDAMIINKSAHERGFGDGV 802

Query: 744  IYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHS--------------VIDSDGLPYVGQ 789
            IY+T+  +L++         +  R   + KSL                 +D DGLP VG 
Sbjct: 803  IYKTKVYELNEK-------SRSSRSKTEIKSLFGFAEGDPNISETVLQTLDPDGLPAVGT 855

Query: 790  MIHPGE---PYCSI-YDKTTNSWRT---NSR----KGSESVFVDYVAVDMKNSKNLP-QK 837
             +  G     Y S+ +D +    +    N++    K +E  ++D + +    + + P Q 
Sbjct: 856  KVSEGSVVLAYHSVMFDPSEGKLKNLDGNTKYFKYKDAEEAYIDQIRLIGTETGDQPCQA 915

Query: 838  ANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMT 897
             +I++R  R PIIGDKFSSRHGQKGVCS LWP  DMPFS  +G++PD+IINPHAFPSRMT
Sbjct: 916  ISIKYRIPRRPIIGDKFSSRHGQKGVCSMLWPSQDMPFSE-SGIQPDVIINPHAFPSRMT 974

Query: 898  IAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYH 957
            I M +ES+A K G+LHG   D TPF+            DE  +  D  GE LR  G+N++
Sbjct: 975  IGMFVESLAGKSGALHGLAQDCTPFS-----------FDEDHTAGDFFGEQLRQAGYNFY 1023

Query: 958  GVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGG 1017
            G E LYSGV G E   +I+IG VYYQRLRHMVSDKFQVR+TG ++ +  QPIKGR +GGG
Sbjct: 1024 GNEPLYSGVTGKEFAADIYIGVVYYQRLRHMVSDKFQVRTTGPVNALHGQPIKGRSKGGG 1083

Query: 1018 IRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGG 1077
            IR GEMERDSL+AHG AYLL DRL  CSD   A VC  CGS L+ T + P + A+     
Sbjct: 1084 IRVGEMERDSLIAHGCAYLLQDRLMDCSDKQRAWVCRSCGSFLS-TMMVPNQFALAGGNS 1142

Query: 1078 LPPARAPK-----KVTCHACQTSKGME----------------------TVAMPYVFRYL 1110
              P  A +      V C AC      +                       V +P V RYL
Sbjct: 1143 NKPRAAQRVDPSGMVRCRACARPATFDDPKLSVWEDGAGRKFVGGDNTTVVNVPGVLRYL 1202

Query: 1111 AAELAAMNIKITLQL 1125
              ELAAM ++ T Q+
Sbjct: 1203 DVELAAMGVRTTFQI 1217


>gi|403416652|emb|CCM03352.1| predicted protein [Fibroporia radiculosa]
          Length = 1192

 Score =  855 bits (2208), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/1152 (41%), Positives = 677/1152 (58%), Gaps = 156/1152 (13%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
             R+   SY G+++  + ++  D   P+  E  + G  P+M+++ RC+L+G  S +LVS  
Sbjct: 132  ARERLTSYRGRMVVKLCWRVNDG--PIEIETKDCGLLPLMVRSVRCNLRGMSSAELVSKH 189

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EE+ E GGYFI+NG ER+ R +ILP++++ +S+VR SF +R   YT  AV IRCVR DQ+
Sbjct: 190  EESEEFGGYFIINGNERLIRYLILPRRHHVISLVRPSFANRGPSYTAYAVQIRCVRPDQT 249

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            SVT  L+YL NGS  L F  + +EY++P+ ++LKALV  +D EIF  +     + Y+   
Sbjct: 250  SVTNTLHYLSNGSAMLRFNWRKQEYVIPIMLILKALVSASDKEIFEGVMM---QDYEDT- 305

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
                   +++RV+++L   +  SL T  QCL+ +G  F+ V++  +  +  A+       
Sbjct: 306  ------FLTDRVELLLRSFKMYSLVTGDQCLEFLGNKFRVVLNMPEDWTNKAIG------ 353

Query: 278  YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
                            ++++QK+     H S           E+LLPG L  + +KE+LE
Sbjct: 354  ----------------VWLVQKI-----HAS---------EAEVLLPGTLYGMIIKERLE 383

Query: 338  DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
            + L      I+ ++  +    DFF+   I+KV+ +  +  IG+ +   L TG L + TGL
Sbjct: 384  EALNGFANGIRQDVNRSEASVDFFDKRYIRKVLGRT-NFDIGSRMANFLATGNLISPTGL 442

Query: 398  DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDG 457
            DLQQ +G+T+ AE+LN+ R+IS FR++HRGA FA L+TT+VRKLLPE+WGFLCPVHTPDG
Sbjct: 443  DLQQASGFTIVAEKLNWQRYISHFRSIHRGAFFAELKTTTVRKLLPEAWGFLCPVHTPDG 502

Query: 458  EPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVL 517
             PCGLLNH++ TCR+ +                 I  +L   GM  +    +       L
Sbjct: 503  SPCGLLNHLSRTCRIVTE----------PATVIHIPALLAAHGMTQAFAPSIDG--RRNL 550

Query: 518  SVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTS 577
             V LDG+++G  P+  ++++  +LR  K      IP DLE+G+VP+S  G YPGLY+F+S
Sbjct: 551  CVQLDGKLIGWAPAPVLQQLATNLRIWKTEHKHEIPLDLEIGFVPVSKAGQYPGLYIFSS 610

Query: 578  PPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEEIHPTG 636
              + +RPV+ ++   ++      IG FEQV+M+I C P+  + G      +TH E  PT 
Sbjct: 611  RARMMRPVKYLANGRDDQ-----IGSFEQVYMDIACTPEEIEEGV-----STHVEHSPTN 660

Query: 637  MLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTN 696
             LS++ANLTP+SD NQSPRN+YQCQM KQTMG    AL+ R D KLY LQ+ Q+P+VR  
Sbjct: 661  FLSILANLTPFSDFNQSPRNIYQCQMGKQTMGTPATALRHRTDNKLYRLQSGQSPVVRPA 720

Query: 697  TYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDG 756
             +  YG+D +P GTNAIVAV++YTGYDMEDAMILNKS+ +RG  +G +Y+++T+DL D  
Sbjct: 721  LHNTYGMDSFPNGTNAIVAVISYTGYDMEDAMILNKSAHERGFGYGTVYKSQTVDLKDMP 780

Query: 757  NKVDRGQKLFRRNKDAKSLH------------------SVIDSDGLPYVGQMIHPGEPYC 798
                       RN    +LH                    +  DGLP+VG  +  G+P  
Sbjct: 781  GT--------SRNSSTPTLHFGFGYDIRTFGDKQHPCCDFLGDDGLPFVGVRLSAGDPLA 832

Query: 799  SIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSR 857
            +  D TT   +    KG E  +VD V +   ++ +   QK +I  R TR+P+IGDKFSSR
Sbjct: 833  AYVDDTTGRTKFVKYKGDEVAYVDTVRLLGSDAGDSELQKVHISLRITRSPVIGDKFSSR 892

Query: 858  HGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFM 917
            HGQKGVCSQ WP IDMPFS  +GM+PD+IINPHAFPSRMTI ML+ES+A K G++HG   
Sbjct: 893  HGQKGVCSQKWPAIDMPFS-ESGMQPDVIINPHAFPSRMTIGMLVESMAGKAGAMHGLAQ 951

Query: 918  DATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFI 977
            DATPF  S           E  + VD  G+ L   G+NY+G E +YSG+ G E   +I+I
Sbjct: 952  DATPFQFS-----------EEDTAVDYFGQQLLAAGYNYYGNEPMYSGITGQEFAADIYI 1000

Query: 978  GPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLL 1037
            G VYYQRLRHMV DKFQVR+TG +D +TRQP+KGRKR GGIRFGEMERD+L+AHG ++LL
Sbjct: 1001 GVVYYQRLRHMVLDKFQVRTTGPVDPVTRQPVKGRKRAGGIRFGEMERDALIAHGTSFLL 1060

Query: 1038 HDRLHTCSDYHVADVCSLCGSVLTATF--IHPQKRAIREIGGLPPARAPKKVTCHACQ-- 1093
             DRL  CSDY  A VC  CGS+++  +  +   +  I   G L P   P    C  C+  
Sbjct: 1061 QDRLMNCSDYSTAWVCRTCGSLISLGYEDVSLGEMVIGASGKLKPT-GPGGEYCRVCRAT 1119

Query: 1094 --------------------------------------TSKG--METVAMPYVFRYLAAE 1113
                                                   SKG  ++ VA+PYVFRYL AE
Sbjct: 1120 AEEEDVRARQALANGQNDRPGVQGDLRVAIPSQHVLGPASKGGDLDIVAVPYVFRYLCAE 1179

Query: 1114 LAAMNIKITLQL 1125
            LA+M I I+L++
Sbjct: 1180 LASMGIAISLEV 1191


>gi|326915056|ref|XP_003203837.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
            RPA2-like [Meleagris gallopavo]
          Length = 1048

 Score =  853 bits (2203), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/1100 (42%), Positives = 653/1100 (59%), Gaps = 79/1100 (7%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
             CR  + +Y G+L  D+ +     G P    +   G  P+M+K++ C+L     Q+L+  
Sbjct: 15   ECRGXRSTYRGRLTVDISWSL--NGIPQGSIKQPVGYIPIMVKSKLCNLYNLSPQELIQH 72

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
             EE  EMGGYFI+NGLE+V R +I+P++N+P++M R  +++R  G+T+  VV+ CV+ + 
Sbjct: 73   HEEEEEMGGYFIINGLEKVIRMLIMPRRNFPLAMTRHKWKNRGPGFTEYGVVLHCVKDEH 132

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
            S++ + L+YL NG V + F  Q + + LP+G  LKALV+  D +IF  L           
Sbjct: 133  SAINMNLHYLENGCVMMNFIFQKELFFLPLGFALKALVNFTDYQIFEELV---------- 182

Query: 217  KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
            K           V  +L  V +    T+   L+++G+ F+  ++  +  S    A+ +  
Sbjct: 183  KDKKNDTFYVNCVTEMLRAVAEAGCYTQQNVLEYLGKSFRVKLNLPEWYSNEQAADFIFN 242

Query: 277  DYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
              I +HL D  +KF LL  M +KL++      + DNPDSL NQE+L  G L  ++LKE+L
Sbjct: 243  KCICIHLTDRTEKFYLLCMMTRKLYAFAKGECMEDNPDSLMNQEVLTAGQLFLMFLKERL 302

Query: 337  EDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
            E+WL+  K +++   E    K D  N+     +   + +  +  S E +L TG L ++TG
Sbjct: 303  ENWLQSVKFILEKRTE----KADI-NINTDSLMKAFSLTTDVTKSFEYLLATGNLRSKTG 357

Query: 397  LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
            L + Q +G  V  ++LNF+R++S FR +HRG++FA +RTT+VRKLLPESWGFLCPV TPD
Sbjct: 358  LGMLQDSGLCVVGDKLNFVRYLSHFRCIHRGSAFAQMRTTTVRKLLPESWGFLCPVDTPD 417

Query: 457  GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPA- 515
            GEPCGL+NHMT+ C + +               T +  +L  +G++P       S P A 
Sbjct: 418  GEPCGLMNHMTAVCEIVTEMVPV----------TDLPPLLCALGVVPI--DATPSKPYAE 465

Query: 516  VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS-LGGAYPGLYL 574
               V+LDG VVG +      +V   LRR K++     P   EV  +P++     YPGL++
Sbjct: 466  CYRVVLDGAVVGWVEWDLAPQVAEALRRFKITQEKRFPARAEVVLIPMTGKPSLYPGLFI 525

Query: 575  FTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPA--THEEI 632
            FT+P + VRPV+N+    +E      IG  EQVFM +   +       +  P   TH+E+
Sbjct: 526  FTTPCRMVRPVKNLLYGRKE-----WIGTLEQVFMNVATMES------DVVPGVTTHQEL 574

Query: 633  HPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPI 692
             P  +LSVVANL P+SDHNQSPRNMYQCQM KQTMGF V   K R+D KLY L TPQ+P+
Sbjct: 575  FPHSILSVVANLIPFSDHNQSPRNMYQCQMGKQTMGFPVYNYKDRSDNKLYLLHTPQSPL 634

Query: 693  VRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDL 752
            VR   Y  YG+D YP GTN++VAV++Y+GYDMEDAMI+NKSS +RG  +G + + E+IDL
Sbjct: 635  VRPRMYDYYGMDSYPVGTNSVVAVISYSGYDMEDAMIVNKSSWERGFAYGSVIKMESIDL 694

Query: 753  SDDGNKVDRG--QKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRT 810
            S    K  RG    +F       ++   +D+DGLP+VG ++ PG+P+ S  +  T    T
Sbjct: 695  S---LKASRGGDNLVFGIRPGDPNIKEKLDADGLPFVGSILQPGDPFYSYMNLNTGETFT 751

Query: 811  NSRKGSESVFVDYVAV---DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQL 867
               +  E   VD + +   D    K   +KA I  R  RNP +GDKF+SRHGQKG+ SQL
Sbjct: 752  VYYQNKEVGIVDNIKLCSNDRGTGKF--KKACITVRVPRNPTVGDKFASRHGQKGILSQL 809

Query: 868  WPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVK 927
            WP  DMPF+   GM PD++ NPH FPSRMTI ML+ES+A K  +LHG + DATPF  +  
Sbjct: 810  WPVEDMPFTE-NGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGAYYDATPFTFT-- 866

Query: 928  KTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRH 987
                     E  S +   GE L + G+N+ G E +YSG+ G EL  +IF+G VYYQRLRH
Sbjct: 867  ---------EKNSALKYFGETLVSAGYNFFGTEKMYSGISGVELEADIFVGVVYYQRLRH 917

Query: 988  MVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDY 1047
            MVSDKFQVR+TG  D +T QP+KGR   GGIRFGEMERD+LLAHG ++LLHDRL +CSD 
Sbjct: 918  MVSDKFQVRTTGPRDSVTNQPVKGRNVEGGIRFGEMERDALLAHGTSFLLHDRLFSCSDG 977

Query: 1048 HVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP--KKVTCHACQTSKGMETVAMPY 1105
              A VC+ CGS+L+     P           PP+     ++ +C  C     ++ + +P+
Sbjct: 978  SEAYVCTSCGSMLSPLLQRP-----------PPSSVASNRRYSCMLCGRMDTIQVIPVPH 1026

Query: 1106 VFRYLAAELAAMNIKITLQL 1125
            VFRY  AELAAMNIK+ L L
Sbjct: 1027 VFRYFLAELAAMNIKLRLTL 1046


>gi|449496428|ref|XP_004175182.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
            RPA2 [Taeniopygia guttata]
          Length = 1059

 Score =  852 bits (2202), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/1096 (42%), Positives = 649/1096 (59%), Gaps = 71/1096 (6%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
             CR  + +Y G++ AD+ +   D     ++     G  P+M+K++ C+L G   Q L+  
Sbjct: 27   ECRGVRSTYRGRITADISWSLNDMPQGTIKH--PLGYIPIMVKSKLCNLYGFSPQDLMQH 84

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
             EE  EMGGYFI+NGLE+V R +I+P++N+P++M R  +++R  G+T+  VV+ CV+ + 
Sbjct: 85   HEEEEEMGGYFIINGLEKVVRMLIMPRRNFPLAMTRQKWKNRGPGFTEYGVVMHCVKDEH 144

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
            +++ + L+YL NG V + F  + + + LP+G  LKALV+  D +IF  L           
Sbjct: 145  TAINMNLHYLENGCVMVNFIFRKELFFLPLGFALKALVNFPDYQIFEELV---------- 194

Query: 217  KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
            KG       +  V  +L  V D    T+   L ++G+ F+  ++  +  S    A+ ++ 
Sbjct: 195  KGREDDTFYANCVTEMLRAVVDAGCLTQQNVLDYLGKSFRVKLNLPEWYSNEQAADFLLS 254

Query: 277  DYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
            + I +HL +  +KF LL  M QKL++      + DNPDSL N E+L PG L  ++LKE+L
Sbjct: 255  NCICIHLTNRTEKFYLLCMMTQKLYAFAKGECMEDNPDSLMNHEVLTPGQLFLMFLKERL 314

Query: 337  EDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
            E WL+  + +++   E   K     N  ++ K     P        E +L TG L ++TG
Sbjct: 315  ETWLQSVRFVLEKRAE---KANTTLNTDSLVKAFSLAP--DFTRPFEYLLATGNLRSKTG 369

Query: 397  LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
            L + Q +G  V  ++LNF+R++S FR +HRGA+F+ +RTT+VRKLLPESWGFLCPV TPD
Sbjct: 370  LGMLQASGLCVVGDKLNFIRYLSHFRCIHRGAAFSQMRTTTVRKLLPESWGFLCPVDTPD 429

Query: 457  GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAV 516
            GEPCGL+NHMT+ C + +       +RD   +  S+     GV  I + P    S     
Sbjct: 430  GEPCGLMNHMTALCEIVT---EMVPVRDIPPLLCSL-----GVTPIDAAPSRPYS---EC 478

Query: 517  LSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGA-YPGLYLF 575
              V+LDG +VG +      ++   LRR K++     P   EV  +P++   + YPGL++F
Sbjct: 479  YRVVLDGSMVGWVEQELAPEIAETLRRFKITQEKRFPARAEVVLIPMTGKPSLYPGLFIF 538

Query: 576  TSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPA--THEEIH 633
            T+P + VRPVRN+S    E      IG  EQ+FM +   +          P   TH+E+ 
Sbjct: 539  TNPCRMVRPVRNLSYGRNE-----WIGTLEQIFMNVATLES------EVVPGVTTHQELF 587

Query: 634  PTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIV 693
            P  +LSVVANL P+SDHNQSPRNMYQCQM KQTMGF V   K R+D KLYHL TPQ+P+V
Sbjct: 588  PHSILSVVANLIPFSDHNQSPRNMYQCQMGKQTMGFPVYNYKDRSDNKLYHLHTPQSPLV 647

Query: 694  RTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLS 753
            R + Y  YG+D YP GTN+IVAV++Y+GYDMEDAMI+NKSS  RG  +G + + E+IDLS
Sbjct: 648  RPSMYDYYGMDSYPVGTNSIVAVISYSGYDMEDAMIVNKSSWQRGFAYGSVIKAESIDLS 707

Query: 754  DDGNKVDRGQKL-FRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNS 812
               ++   G  L F       ++   +D+DGLP+VG ++ PG+P+ S  +  T    T  
Sbjct: 708  LKASRA--GDNLVFGIKPGDPNIGEKLDADGLPFVGSILQPGDPFYSFMNLNTGETFTVY 765

Query: 813  RKGSESVFVDYVAV---DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWP 869
                E   VD V +   D    K   +K  I  R  RNP IGDKF+SRHGQKG+ SQLWP
Sbjct: 766  YPSKEVGIVDNVRLCSNDRGTGKF--KKVCITVRVPRNPTIGDKFASRHGQKGILSQLWP 823

Query: 870  DIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKT 929
              DMPF+   GM PD++ NPH FPSRMTI ML+ES+A K  +LHG   DATPF  +    
Sbjct: 824  VEDMPFTE-NGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGVSYDATPFTFT---- 878

Query: 930  NGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMV 989
                   E KS +   GE L + G+N+ G E +YSG+ G EL  +IF+G VYYQRLRHMV
Sbjct: 879  -------EKKSALKYFGETLASAGYNFFGTEKMYSGISGVELEADIFVGVVYYQRLRHMV 931

Query: 990  SDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHV 1049
            SDKFQVR+TG  D +T QP+KGR   GGIRFGEMERD+LLAHG ++LL DRL  CSD  V
Sbjct: 932  SDKFQVRTTGPRDAVTNQPVKGRNVEGGIRFGEMERDALLAHGTSFLLQDRLFNCSDGSV 991

Query: 1050 ADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRY 1109
            A VC+ CGS+ +          + E        + ++ +C  C   + +E V +P+VFRY
Sbjct: 992  AYVCTSCGSMTS---------PVLEKLSRSSVTSSRRYSCSTCSEVEAIEVVPVPHVFRY 1042

Query: 1110 LAAELAAMNIKITLQL 1125
              AELAAMNIK  L +
Sbjct: 1043 FVAELAAMNIKTKLNV 1058


>gi|389633795|ref|XP_003714550.1| DNA-directed RNA polymerase I subunit RPA2 [Magnaporthe oryzae 70-15]
 gi|351646883|gb|EHA54743.1| DNA-directed RNA polymerase I subunit RPA2 [Magnaporthe oryzae 70-15]
          Length = 1240

 Score =  851 bits (2199), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/1155 (41%), Positives = 680/1155 (58%), Gaps = 120/1155 (10%)

Query: 33   EMF-DHCRQAKISYTGKLMADVEFQYLDAG-SPVVRERFNFGQFPVMLKTRRCHLQGADS 90
            E+F   CR+  +SY GKL A  E+Q  +      VR+    GQ P+M+K+ RCHL+G   
Sbjct: 112  EIFPSECRERHVSYRGKLSATFEYQINNGELKECVRD---IGQMPIMVKSNRCHLEGNSP 168

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
              LV  KEE+ E+GGYFI+NG E++ R ++L ++N+P+++ R SF++R   YT   +++R
Sbjct: 169  ALLVQRKEESEELGGYFIVNGNEKIIRLLLLNRRNFPLAINRPSFQNRGPAYTPYGIILR 228

Query: 151  CVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYD 210
             VR D++S T  L+YL +G+V   F  +  EYL+PV ++LKALV+TND EIF  L     
Sbjct: 229  SVRPDETSQTNVLHYLNDGNVTFRFSWRKNEYLVPVMMILKALVETNDSEIFEGLCGPPG 288

Query: 211  EKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAV 270
             K       VG+  +++RV+++L   +   L ++ +   ++GE F+ V+    S S+Y V
Sbjct: 289  SK------GVGNSFLTDRVELLLRTYKSYGLYSKTKTRAYLGEKFRVVLGVQDSMSHYDV 342

Query: 271  AETVIRDYIFVHL-------NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILL 323
                ++  + VHL        ++ DKF +++ M++KL++LV      DNPD++QNQEILL
Sbjct: 343  GTEFLKKIVLVHLGSHDVTEQEDADKFRMILVMMRKLYALVAGECAVDNPDAVQNQEILL 402

Query: 324  PGHLITIYLKEKLEDWLRKG-KKLIQDEIENNGKKFDFFNLANIKKVMEKN----PSKQI 378
             G+L  + LKE+LE+++    +  ++D +  +    + F  A  +K    N     ++ +
Sbjct: 403  GGYLYGMILKERLEEFVAVSLRAALRDYLRRSPA--NTFTSAAFEKDFPANIFRRTNENL 460

Query: 379  GTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSV 438
            G S+E  L TG L + +GLDLQQ +G+ V AE+LNFLRFIS FR VHRG+ FA L+TT+V
Sbjct: 461  GNSLEYFLSTGNLQSPSGLDLQQTSGFVVVAEKLNFLRFISHFRMVHRGSFFAQLKTTTV 520

Query: 439  RKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIG 498
            RKLLPESWGFLCPVHTPDG PCGLLNH+   C++ +      +  D S    +I R+   
Sbjct: 521  RKLLPESWGFLCPVHTPDGSPCGLLNHLAHKCKIMT------DAVDVS----AIPRLATE 570

Query: 499  VGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEV 558
            +G++ +     +   P    V+LDG+++G     +   +   LR  KV  +  +P  +E+
Sbjct: 571  LGVVDTSSADTEESVP----VMLDGKILGWCSPKQSRTIADTLRYWKVEGSHGVPVHMEI 626

Query: 559  GYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC--PDG 616
            G VP S GG+YPG+Y+ + P + VRPV+ + L  E+      +G  EQ +M I C  P+ 
Sbjct: 627  GLVPPSNGGSYPGIYMASQPSRMVRPVKYLPLEKED-----YVGTHEQPYMSIACTEPEI 681

Query: 617  GDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKF 676
              G       +TH E  PT MLS++AN+TP+SD NQSPRNMYQCQM KQTMG    A+  
Sbjct: 682  VSG------ESTHVEFDPTNMLSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPGAAISR 735

Query: 677  RADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVD 736
            R D K+Y +QT QTPIVR   + +YG D +P G NA+VAV++YTGYDM+DAMI+NKS+ +
Sbjct: 736  RTDNKMYRIQTGQTPIVRAPLHNEYGFDNFPNGMNAVVAVISYTGYDMDDAMIINKSAHE 795

Query: 737  RGMCHGQIYQTETIDLSDDG--NKVDRGQKLF----RRNKDAKSLHSVIDSDGLPYVGQM 790
            RG  HG IY+T+ I L DD          K+F         A+ L   +D DGLP +G  
Sbjct: 796  RGFGHGTIYKTKKITLKDDSRTRSTKHITKMFGFAPNTTVKARDLEK-LDLDGLPRIGSK 854

Query: 791  IHPGEPYCSIY-------DKTTNS---WRTNSRKGSESVFVDYV-AVDMKNSKNLPQKAN 839
            +  G+   + +       D+  N          K SE+ FV+ +  V  +N     Q  +
Sbjct: 855  VEQGDIIAAWHTVSADYSDQLVNRDGLTHYEKYKDSETAFVEEIRLVGNENGTEPLQTVS 914

Query: 840  IRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIA 899
            I+FR  R+P+IGDKFSSRHGQKGV SQ WP IDMPFS  +GM+PD+IINPHAFPSRMTI 
Sbjct: 915  IKFRIPRSPVIGDKFSSRHGQKGVASQKWPMIDMPFSE-SGMQPDVIINPHAFPSRMTIG 973

Query: 900  MLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGV 959
            M +ES+A K G+LHG   D+TPF             DE  +  D  G  L   G+NYHG 
Sbjct: 974  MFVESLAGKSGALHGLAQDSTPFK-----------FDEQNTAADYFGHQLMKAGYNYHGN 1022

Query: 960  EVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIR 1019
            E +YSG+ G EL  +I+IG VYYQRLRHMV+DKFQVR+TG +   T QPIKGRKRGGGIR
Sbjct: 1023 EPMYSGITGQELAADIYIGVVYYQRLRHMVNDKFQVRTTGPVVPTTGQPIKGRKRGGGIR 1082

Query: 1020 FGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLP 1079
             GEMERD+LLAHG A+LL DRL  CSDY  + +C  CG     TF+  Q      +G   
Sbjct: 1083 VGEMERDALLAHGTAFLLQDRLLNCSDYTRSWICRTCG-----TFLSVQPTVSPFVG--- 1134

Query: 1080 PARAPKKVTCHAC---------------------QTSKGME--------TVAMPYVFRYL 1110
              R    V C +C                     +  +G +         V +P   ++L
Sbjct: 1135 -KRKVNTVRCRSCAQRLDRLDEDVDLATLEGEIWEDGQGNQWIGGDNTTVVVVPGALKFL 1193

Query: 1111 AAELAAMNIKITLQL 1125
              ELAAM +K+  ++
Sbjct: 1194 DVELAAMGVKLKYRV 1208


>gi|358398287|gb|EHK47645.1| hypothetical protein TRIATDRAFT_132650 [Trichoderma atroviride IMI
            206040]
          Length = 1230

 Score =  851 bits (2199), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/1162 (41%), Positives = 673/1162 (57%), Gaps = 144/1162 (12%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR+   +Y GKL A   F+Y   G   +      GQ P+M+K+ RCHL+      LV  K
Sbjct: 118  CRERHATYRGKLSA--TFEYDINGGDTIEFTRELGQVPIMIKSNRCHLENNSPDLLVRRK 175

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EE+ E+GGYFI+NG E++ R + + K+N+PM++ R SF +R  GYT   +++R VR D++
Sbjct: 176  EESEELGGYFIVNGNEKIIRLLQMNKRNFPMAINRPSFTNRGAGYTTYGIILRSVRPDET 235

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            S T  L+YL +G+V   F  +  EYL+PV ++LKALV+TND EIF  L      K     
Sbjct: 236  SQTNVLHYLKDGNVTFRFSWRKNEYLIPVIMILKALVETNDREIFEGLIGPMGSK----- 290

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
             A  +  +++RV+++L   +   L ++ +   ++G+ F+ V+   ++ S Y V    +R 
Sbjct: 291  -AAKNTFLTDRVELLLRTYKAYRLYSKSETRAYLGQKFRVVLGVPETMSDYEVGTEFLRR 349

Query: 278  YIFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITI 330
             + VHL + +       DKF +++FM++KL++L       DNPD++QNQEILL G L   
Sbjct: 350  IVCVHLGNVDVTEKQDLDKFQMVLFMIRKLYALAAGECAVDNPDAIQNQEILLGGFLYGQ 409

Query: 331  YLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVME------KNPSKQIGTSIET 384
             LKE+L+D+L      ++  I +  ++    N  + +   E      +  ++ I   +E 
Sbjct: 410  ILKERLDDFLGTS---VRGAIRDYLRRHPAVNFTSEEFKKEFPGGIFRKSNENIANGLEY 466

Query: 385  MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPE 444
             L TG L + +GLDLQQ AG+TV AE+LNFLRFIS FR VHRGA FA L+TT+VRKLLPE
Sbjct: 467  FLSTGNLVSPSGLDLQQTAGFTVVAEKLNFLRFISHFRMVHRGAFFAQLKTTAVRKLLPE 526

Query: 445  SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
            SWGF+CPVHTPDG PCGLLNHMT  C++ + +    N+                V  + +
Sbjct: 527  SWGFMCPVHTPDGSPCGLLNHMTHKCKIMTDHLDVSNVPAL-------------VAELGA 573

Query: 505  LPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS 564
            +     S   +V+ ++LDG+V+G     E  ++   LR  KV     +P  LE+GYVP S
Sbjct: 574  VETSSASTDESVV-IMLDGKVIGWSTPKESLRIADCLRYWKVEGTHRVPLQLEIGYVPPS 632

Query: 565  LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRN 623
             GG+YPGLYL ++P + VRPV+ + L  E+      +GP EQ +M I   P   + G   
Sbjct: 633  NGGSYPGLYLSSTPARMVRPVKYLPLQKED-----FVGPHEQPYMSIAVVPQEIESGV-- 685

Query: 624  AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
               +TH E  PT MLS++AN+TP+SD NQSPRNMYQCQM KQTMG    A++ R D K Y
Sbjct: 686  ---STHVEYDPTNMLSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPGTAIRHRTDNKSY 742

Query: 684  HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
             +QT QTPIVR   +  YG D +P G NA+VAV++YTGYDM+DAMI+NKS+ +RG  HG 
Sbjct: 743  RIQTGQTPIVRAPLHNTYGFDNFPNGMNAVVAVISYTGYDMDDAMIINKSAHERGFGHGT 802

Query: 744  IYQTETIDLSDDGNKVDRGQKLFRRNKDAKSL--------HS--------VIDSDGLPYV 787
            +Y+T+ I L DD            R + AKS+        HS        ++D DGLP+V
Sbjct: 803  VYKTKKITLKDDS-----------RTRAAKSVVKMFGFAPHSYVSAAYQGMLDDDGLPHV 851

Query: 788  GQMIHPGEPYCSIYDKTTNSWRTN-----------SRKGSESVFVDYVAVDMKNSKNLP- 835
            G+M+   +  C+ Y   T  +  N             K SE  F++ V +    S + P 
Sbjct: 852  GRMVKEDDVLCA-YHTVTPDYNGNLVNLDGITHYEKYKDSEVGFIEEVRLIGAESGSEPL 910

Query: 836  QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSR 895
            Q  +I+ R  R+P+IGDKFSSRHGQKGV SQ WP  DMPFS  TG++PD+IINPHAFPSR
Sbjct: 911  QTISIKIRIPRSPVIGDKFSSRHGQKGVLSQKWPATDMPFS-ETGIQPDVIINPHAFPSR 969

Query: 896  MTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFN 955
            MTI M +ES+A K G+LHG   D+TPF             DE  +  D  G  L   GFN
Sbjct: 970  MTIGMFVESLAGKAGALHGLAQDSTPFR-----------FDEENTAGDYFGHQLMKAGFN 1018

Query: 956  YHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRG 1015
            YHG E +YSG+ G EL  +I++G VYYQRLRHMV+DK+QVR+TG +   T QPIKGRKRG
Sbjct: 1019 YHGNEPMYSGITGEELGADIYVGVVYYQRLRHMVNDKYQVRTTGPVVPTTGQPIKGRKRG 1078

Query: 1016 GGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVL----TATFIHPQKRA 1071
            GGIR GEMERD+LLAHG A+LL DRL  CSDY  + +C  CGS L    T +   P K+ 
Sbjct: 1079 GGIRVGEMERDALLAHGTAFLLQDRLLNCSDYTKSWICRRCGSFLSVQPTVSQFAPGKK- 1137

Query: 1072 IREIGGLPPARAPKKVTCHACQT----SKGME------------------------TVAM 1103
                      +AP  V C  C      S+G++                         V +
Sbjct: 1138 ----------KAPSMVRCRNCAVKLDDSEGIDLTEIQGEIWEDGQGNCWVGGDQTTQVVV 1187

Query: 1104 PYVFRYLAAELAAMNIKITLQL 1125
            P   ++L  ELAAM +K+  ++
Sbjct: 1188 PGALKFLDVELAAMGVKLKYRI 1209


>gi|451852990|gb|EMD66284.1| hypothetical protein COCSADRAFT_179601 [Cochliobolus sativus ND90Pr]
          Length = 1213

 Score =  846 bits (2185), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/1142 (41%), Positives = 668/1142 (58%), Gaps = 118/1142 (10%)

Query: 39   RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
            R+   +Y GK+ A +E++  +       E  + G  P+MLK+ RCHL+G     LV  KE
Sbjct: 125  RERHATYRGKMRARLEWRVNNGD--WQEEVVDLGSIPIMLKSNRCHLEGLPPAALVKAKE 182

Query: 99   EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
            E+ E+GGYFI+NG E++ R + +  +NYPM++ R +F +R  GYT   + +R +R DQ+S
Sbjct: 183  ESDELGGYFIINGNEKIIRMLQVNHRNYPMAIKRGAFTNRGPGYTQFGIQLRSMRPDQTS 242

Query: 159  VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKG 218
             T  L+YL +G+V   F  +  EYL+P+ ++LKALV+TND EIF  L      +  ++K 
Sbjct: 243  QTNALHYLSDGNVNFRFSWRKAEYLVPICMILKALVETNDREIFEGLVGAAGSEGLEQK- 301

Query: 219  AVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDY 278
                  V++RV+++L   +   L ++ +   ++GE F+ V+      +        +R  
Sbjct: 302  ----QFVTDRVELLLRTYKVYGLHSKAKTRAYLGEKFKVVMQLPADVTDEEAGTEFLRKI 357

Query: 279  IFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIY 331
            +  HL   N       DKF +L+FM +KL++LV+     DNPD++QNQEILL G L  + 
Sbjct: 358  VLPHLGCVNVTPAQDADKFRMLLFMTRKLYALVEGDCAVDNPDAVQNQEILLGGQLYGMI 417

Query: 332  LKEKLEDWLRKGKKLIQDEIENNGKKFDF-------FNLANIKKVMEKNPSKQIGTSIET 384
            LKE+LE+WL   + ++++     G++ ++       F+     K++ +     IG ++E 
Sbjct: 418  LKERLEEWLNSFQIVLREW----GRRTEYRPFTSQEFHKDWSSKILRRT-QLAIGQAMEY 472

Query: 385  MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPE 444
             L TG L + TGLDLQQ +G+ V AE+LNF RFIS FR VHRGA FA L+TT+VRKLLPE
Sbjct: 473  FLSTGNLVSPTGLDLQQTSGFVVVAEKLNFPRFISHFRMVHRGAFFATLKTTTVRKLLPE 532

Query: 445  SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
            SWGF+CPVHTPDG PCGLLNH + TC++A+      N+ D S +   +  + +      S
Sbjct: 533  SWGFMCPVHTPDGSPCGLLNHFSHTCKIATT-----NL-DVSAVPKLVAELGVSSKSSAS 586

Query: 505  LPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS 564
            L         A + V LDGRV+G     + + +   LR  KV  +  +P ++E+GY+P S
Sbjct: 587  LD--------ASVVVQLDGRVLGFCSPKQAKIISDTLRYWKVEGSHGVPVEMEIGYIPNS 638

Query: 565  LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDG----GDGG 620
              G YPG+Y+F+   +  RPV+ + L       ++ +GPFEQ +M I   D     GD  
Sbjct: 639  NNGQYPGVYMFSQCSRMYRPVKYLPL-----SKLDYVGPFEQPYMSISVTDAEIVSGD-- 691

Query: 621  RRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQ 680
                  +TH E  PT + S++AN TP+SD NQSPRNMYQCQM KQ+MG    A+++R D 
Sbjct: 692  ------STHVEFEPTNIFSIIANQTPFSDFNQSPRNMYQCQMGKQSMGTPGTAMRYRTDN 745

Query: 681  KLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMC 740
            K Y LQT QTPI R   Y +YG+D +P G NA+VAV++YTGYDM+DAMILNKSS +RG  
Sbjct: 746  KTYRLQTGQTPIARPPLYNEYGMDNFPNGMNAVVAVISYTGYDMDDAMILNKSSHERGFG 805

Query: 741  HGQIYQTETIDLSDDGNKVDRGQ----KLFRRNKDA---KSLHSVIDSDGLPYVGQMIHP 793
            HG +Y+T+ ++L ++GN+  R      KLF    +          +D DGLP +G M+  
Sbjct: 806  HGTVYKTKILNL-EEGNRKSRSNKSIAKLFGFAPEGLVKAESKETLDIDGLPRIGTMLRS 864

Query: 794  GEPYCSI----YDKTTNSWRTN-------SRKGSESVFVDYVAVDMKNSKNLP-QKANIR 841
            G+P  +     YD  T  +            K  E  FV+ V V        P QK +++
Sbjct: 865  GDPIAAFHTVSYDAATGDYVNRDGQTQFLKYKEDEIAFVEEVRVIGSEDGTQPCQKVSVK 924

Query: 842  FRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAML 901
             R  R+P++GDKFSSRHGQKGV SQ +P  DMPFS  +G++PD+IINPHAFPSRMTI M 
Sbjct: 925  LRTPRSPVVGDKFSSRHGQKGVVSQKFPTTDMPFS-ESGIQPDVIINPHAFPSRMTIGMF 983

Query: 902  LESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEV 961
            +ES+A K G+LHG   D+TPF             DE  + VD  G  L+  G+NY+G E 
Sbjct: 984  VESLAGKSGALHGMAQDSTPFK-----------FDEQNTAVDYFGAQLKAAGYNYYGNEP 1032

Query: 962  LYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFG 1021
            +YSG+ G EL  +I+IG V+YQRLRHMV+DKFQVRS G  + +T QPIKGRK+GGGIR G
Sbjct: 1033 MYSGITGEELYADIYIGVVFYQRLRHMVNDKFQVRSNGPSNALTGQPIKGRKKGGGIRVG 1092

Query: 1022 EMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPA 1081
            EMERD+LLAHG A+LL DRL  CSDY  A VC  CGS L+ T        + E  G    
Sbjct: 1093 EMERDALLAHGTAFLLQDRLMNCSDYTKAAVCRTCGSFLSTT------PTVSEY-GRKKD 1145

Query: 1082 RAPKKVT--CHACQTSKG--------------------METVAMPYVFRYLAAELAAMNI 1119
            R  K VT  C  C    G                    +  VA+P V +YL  EL++M I
Sbjct: 1146 RNGKDVTIRCRRCAKLAGSNDNDVWMDAQGLRYSGGEDVAIVAVPGVLKYLDVELSSMGI 1205

Query: 1120 KI 1121
            ++
Sbjct: 1206 RL 1207


>gi|452002554|gb|EMD95012.1| hypothetical protein COCHEDRAFT_1191766 [Cochliobolus heterostrophus
            C5]
          Length = 1213

 Score =  845 bits (2182), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/1142 (41%), Positives = 670/1142 (58%), Gaps = 118/1142 (10%)

Query: 39   RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
            R+   +Y GK+ A +E++  +       E  + G  P+MLK+ RCHL+G     LV  KE
Sbjct: 125  RERHATYRGKMRARLEWRVNNGD--WQEEVVDLGSIPIMLKSNRCHLEGLPPAALVKAKE 182

Query: 99   EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
            E+ E+GGYFI+NG E++ R + +  +NYPM++ R +F +R  GYT   + +R +R DQ+S
Sbjct: 183  ESDELGGYFIINGNEKIIRMLQVNHRNYPMAIKRGAFTNRGPGYTQFGIQLRSMRPDQTS 242

Query: 159  VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKG 218
             T  L+YL +G+V   F  +  EYL+P+ ++LKALV+TND EIF  L      +  ++K 
Sbjct: 243  QTNALHYLSDGNVNFRFSWRKAEYLVPICMILKALVETNDREIFEGLVGAAGSEGLEQK- 301

Query: 219  AVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDY 278
                  V++RV+++L   +   L ++ +   ++GE F+ V+      +        +R  
Sbjct: 302  ----QFVTDRVELLLRTYKVYGLHSKAKTRAYLGEKFKVVMQLPADVTDEEAGTEFLRKI 357

Query: 279  IFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIY 331
            +  HL   N       DKF +L+FM +KL++LV+     DNPD++QNQEILL G L  + 
Sbjct: 358  VLPHLGCVNVTPAQDADKFRMLLFMTRKLYALVEGDCAVDNPDAVQNQEILLGGQLYGMI 417

Query: 332  LKEKLEDWLRKGKKLIQDEIENNGKKFDF-------FNLANIKKVMEKNPSKQIGTSIET 384
            LKE+LE+WL   + ++++     G++ ++       F+     K++ +     IG ++E 
Sbjct: 418  LKERLEEWLNSFQLVLREW----GRRTEYRPFTSQEFHKDWSSKILRRT-QLAIGQAMEY 472

Query: 385  MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPE 444
             L TG L + TGLDLQQ +G+ V AE+LNF RFIS FR VHRGA FA L+TT+VRKLLPE
Sbjct: 473  FLSTGNLVSPTGLDLQQTSGFVVVAEKLNFPRFISHFRMVHRGAFFATLKTTTVRKLLPE 532

Query: 445  SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
            SWGF+CPVHTPDG PCGLLNH + TC++A+      N+ D S +   +  + +      S
Sbjct: 533  SWGFMCPVHTPDGSPCGLLNHFSHTCKIATT-----NL-DVSAVPKLVAELGVSSKSSAS 586

Query: 505  LPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS 564
            L         A + V LDGRV+G     + + +   LR  KV  +  +P ++E+GY+P S
Sbjct: 587  LD--------ASVVVQLDGRVLGFCSPKQAKIISDTLRYWKVEGSHGVPVEMEIGYIPNS 638

Query: 565  LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDG----GDGG 620
              G YPG+Y+F+   +  RPV+ + L       ++ +GPFEQ +M I   D     GD  
Sbjct: 639  NNGQYPGVYMFSQCSRMYRPVKYLPL-----NKLDYVGPFEQPYMSISVTDAEIVSGD-- 691

Query: 621  RRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQ 680
                  +TH E  PT + S++AN TP+SD NQSPRNMYQCQM KQ+MG    A+++R D 
Sbjct: 692  ------STHVEFEPTNIFSIIANQTPFSDFNQSPRNMYQCQMGKQSMGTPGTAMRYRTDN 745

Query: 681  KLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMC 740
            K Y LQT QTPI R   Y +YG+D +P G NA+VAV++YTGYDM+DAMILNKSS +RG  
Sbjct: 746  KTYRLQTGQTPIARPPLYNEYGMDNFPNGMNAVVAVISYTGYDMDDAMILNKSSHERGFG 805

Query: 741  HGQIYQTETIDLSDDGNKVDRGQ----KLFRRNKDA---KSLHSVIDSDGLPYVGQMIHP 793
            HG +Y+T+ ++L ++GN+  R      KLF    +          +D DGLP +G M+  
Sbjct: 806  HGTVYKTKILNL-EEGNRKSRSNKSIAKLFGFAPEGLIKAESKETLDIDGLPRIGTMLRS 864

Query: 794  GEPYCSI----YDKTTNSWRTN-------SRKGSESVFVDYVAVDMKNSKNLP-QKANIR 841
            G+P  +     YD  T  +            K  E  FV+ V V        P QK +++
Sbjct: 865  GDPIAAFHTVSYDAATGDYVNRDGQTQFLKYKEDEIAFVEEVRVIGSEDGTQPCQKVSVK 924

Query: 842  FRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAML 901
             R  R+P++GDKFSSRHGQKGV SQ +P  DMPFS  +G++PD+IINPHAFPSRMTI M 
Sbjct: 925  LRTPRSPVVGDKFSSRHGQKGVVSQKFPTTDMPFS-ESGIQPDVIINPHAFPSRMTIGMF 983

Query: 902  LESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEV 961
            +ES+A K G+LHG   D+TPF             DE  + VD  G  L+  G+NY+G E 
Sbjct: 984  IESLAGKSGALHGMAQDSTPFK-----------FDEQNTAVDYFGAQLKAAGYNYYGNEP 1032

Query: 962  LYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFG 1021
            +YSG+ G EL  +I+IG V+YQRLRHMV+DKFQVRS G  + +T QPIKGRK+GGGIR G
Sbjct: 1033 MYSGITGEELYADIYIGVVFYQRLRHMVNDKFQVRSNGPSNALTGQPIKGRKKGGGIRVG 1092

Query: 1022 EMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPA 1081
            EMERD+LLAHG A+LL DRL  CSDY  A VC  CGS L+ T        + E  G    
Sbjct: 1093 EMERDALLAHGTAFLLQDRLMNCSDYTKAAVCRTCGSFLSTT------PTVSEY-GRKKD 1145

Query: 1082 RAPKKVT--CHACQT------------SKGME--------TVAMPYVFRYLAAELAAMNI 1119
            R  K VT  C  C              ++G+          VA+P V +YL  EL++M I
Sbjct: 1146 RNGKDVTIRCRRCAKLADSNDNDVWMDAQGLRYSGGEDVAIVAVPGVLKYLDVELSSMGI 1205

Query: 1120 KI 1121
            ++
Sbjct: 1206 RL 1207


>gi|440473458|gb|ELQ42252.1| DNA-directed RNA polymerase I subunit RPA2 [Magnaporthe oryzae Y34]
 gi|440488870|gb|ELQ68559.1| DNA-directed RNA polymerase I subunit RPA2 [Magnaporthe oryzae P131]
          Length = 1192

 Score =  845 bits (2182), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/1183 (41%), Positives = 687/1183 (58%), Gaps = 121/1183 (10%)

Query: 9    FEPLRELVRHHIESFDYML-DEGLSEMFDHC-RQAKISY---TGKLMADVEFQYLDAGSP 63
            +  L+  V  HIESF+ +  D+G   + DH  R     Y       M   E   L   + 
Sbjct: 33   YPALQTAVNPHIESFNALFRDDGKPGLIDHAIRDIGTKYFLDGDASMPSSERNRLSINNG 92

Query: 64   VVRERF-NFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILP 122
             ++E   + GQ P+M+K+ RCHL+G     LV  KEE+ E+GGYFI+NG E++ R ++L 
Sbjct: 93   ELKECVRDIGQMPIMVKSNRCHLEGNSPALLVQRKEESEELGGYFIVNGNEKIIRLLLLN 152

Query: 123  KQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEY 182
            ++N+P+++ R SF++R   YT   +++R VR D++S T  L+YL +G+V   F  +  EY
Sbjct: 153  RRNFPLAINRPSFQNRGPAYTPYGIILRSVRPDETSQTNVLHYLNDGNVTFRFSWRKNEY 212

Query: 183  LLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLT 242
            L+PV ++LKALV+TND EIF  L      K       VG+  +++RV+++L   +   L 
Sbjct: 213  LVPVMMILKALVETNDSEIFEGLCGPPGSK------GVGNSFLTDRVELLLRTYKSYGLY 266

Query: 243  TRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHL-------NDNNDKFNLLIF 295
            ++ +   ++GE F+ V+    S S+Y V    ++  + VHL        ++ DKF +++ 
Sbjct: 267  SKTKTRAYLGEKFRVVLGVQDSMSHYDVGTEFLKKIVLVHLGSHDVTEQEDADKFRMILV 326

Query: 296  MLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKG-KKLIQDEIENN 354
            M++KL++LV      DNPD++QNQEILL G+L  + LKE+LE+++    +  ++D +  +
Sbjct: 327  MMRKLYALVAGECAVDNPDAVQNQEILLGGYLYGMILKERLEEFVAVSLRAALRDYLRRS 386

Query: 355  GKKFDFFNLANIKKVMEKN----PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAE 410
                + F  A  +K    N     ++ +G S+E  L TG L + +GLDLQQ +G+ V AE
Sbjct: 387  PA--NTFTSAAFEKDFPANIFRRTNENLGNSLEYFLSTGNLQSPSGLDLQQTSGFVVVAE 444

Query: 411  RLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTC 470
            +LNFLRFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPVHTPDG PCGLLNH+   C
Sbjct: 445  KLNFLRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLAHKC 504

Query: 471  RVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIP 530
            ++ +      +  D S    +I R+   +G++ +     +   P    V+LDG+++G   
Sbjct: 505  KIMT------DAVDVS----AIPRLATELGVVDTSSADTEESVP----VMLDGKILGWCS 550

Query: 531  SSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISL 590
              +   +   LR  KV  +  +P  +E+G VP S GG+YPG+Y+ + P + VRPV+ + L
Sbjct: 551  PKQSRTIADTLRYWKVEGSHGVPVHMEIGLVPPSNGGSYPGIYMASQPSRMVRPVKYLPL 610

Query: 591  PSEESQNIELIGPFEQVFMEIRC--PDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYS 648
              E+      +G  EQ +M I C  P+   G       +TH E  PT MLS++AN+TP+S
Sbjct: 611  EKED-----YVGTHEQPYMSIACTEPEIVSG------ESTHVEFDPTNMLSILANMTPFS 659

Query: 649  DHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPT 708
            D NQSPRNMYQCQM KQTMG    A+  R D K+Y +QT QTPIVR   + +YG D +P 
Sbjct: 660  DFNQSPRNMYQCQMGKQTMGTPGAAISRRTDNKMYRIQTGQTPIVRAPLHNEYGFDNFPN 719

Query: 709  GTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDG--NKVDRGQKLF 766
            G NA+VAV++YTGYDM+DAMI+NKS+ +RG  HG IY+T+ I L DD          K+F
Sbjct: 720  GMNAVVAVISYTGYDMDDAMIINKSAHERGFGHGTIYKTKKITLKDDSRTRSTKHITKMF 779

Query: 767  ----RRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIY-------DKTTNS---WRTNS 812
                     A+ L   +D DGLP +G  +  G+   + +       D+  N         
Sbjct: 780  GFAPNTTVKARDLEK-LDLDGLPRIGSKVEQGDIIAAWHTVSADYSDQLVNRDGLTHYEK 838

Query: 813  RKGSESVFVDYV-AVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDI 871
             K SE+ FV+ +  V  +N     Q  +I+FR  R+P+IGDKFSSRHGQKGV SQ WP I
Sbjct: 839  YKDSETAFVEEIRLVGNENGTEPLQTVSIKFRIPRSPVIGDKFSSRHGQKGVASQKWPMI 898

Query: 872  DMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNG 931
            DMPFS  +GM+PD+IINPHAFPSRMTI M +ES+A K G+LHG   D+TPF         
Sbjct: 899  DMPFS-ESGMQPDVIINPHAFPSRMTIGMFVESLAGKSGALHGLAQDSTPFK-------- 949

Query: 932  DTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSD 991
                DE  +  D  G  L   G+NYHG E +YSG+ G EL  +I+IG VYYQRLRHMV+D
Sbjct: 950  ---FDEQNTAADYFGHQLMKAGYNYHGNEPMYSGITGQELAADIYIGVVYYQRLRHMVND 1006

Query: 992  KFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVAD 1051
            KFQVR+TG +   T QPIKGRKRGGGIR GEMERD+LLAHG A+LL DRL  CSDY  + 
Sbjct: 1007 KFQVRTTGPVVPTTGQPIKGRKRGGGIRVGEMERDALLAHGTAFLLQDRLLNCSDYTRSW 1066

Query: 1052 VCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHAC------------------- 1092
            +C  CG     TF+  Q      +G     R    V C +C                   
Sbjct: 1067 ICRTCG-----TFLSVQPTVSPFVG----KRKVNTVRCRSCAQRLDRLDEDVDLATLEGE 1117

Query: 1093 --QTSKGME--------TVAMPYVFRYLAAELAAMNIKITLQL 1125
              +  +G +         V +P   ++L  ELAAM +K+  ++
Sbjct: 1118 IWEDGQGNQWIGGDNTTVVVVPGALKFLDVELAAMGVKLKYRV 1160


>gi|326432519|gb|EGD78089.1| RNA polymerase [Salpingoeca sp. ATCC 50818]
          Length = 1130

 Score =  843 bits (2179), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 475/1100 (43%), Positives = 665/1100 (60%), Gaps = 73/1100 (6%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CRQ  +SY G +  ++E       + V R     GQ P+M+ + +C L    + + ++ +
Sbjct: 93   CRQCHVSYKGNITLEIEINVNGHVTTVPR---YVGQAPIMVMSDKCILSKLTTAQKIAKQ 149

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EEA E GGYFI+NG E+V R +++ ++N+PM+++R SF +R   YT+  V IRCVR D++
Sbjct: 150  EEAREFGGYFIINGNEKVIRMLMMARRNHPMALIRPSFMNRGFKYTEYGVQIRCVRPDET 209

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            S  L L+ +  G   LGF ++ ++YL+P  ++L+AL D  + +I+  +          E 
Sbjct: 210  SQRLVLHLIEGGRCTLGFSIRKRQYLIPAILLLRALKDVTERDIYEAIV---------ES 260

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
                S L  E VK +L    D + +     L+++G  F+  +    S S    A  +++ 
Sbjct: 261  DPTDSTL-KEHVKAMLNAAPDNTYSQH-TSLEYLGAMFRIELGMHPSISNIEAARHLLKQ 318

Query: 278  YIFVHL--NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEK 335
            YIFVH+  +D   K++LLI M+++L++L      +DNPDS  NQE+L  G +    LKE+
Sbjct: 319  YIFVHIPQHDYTAKYDLLIAMIRRLYALKSGRVRADNPDSPMNQEVLQAGQIYGALLKEQ 378

Query: 336  LEDWLRKGKKLIQDEIENNGKKFDFFNLANIK-KVMEKNPSKQIGTSIETMLKTGRLATQ 394
            ++++L   K+ I  ++ N G++ D  + +  + +V    P   IG +++  L TG L + 
Sbjct: 379  MQEYLLAMKRFITMQV-NMGREVDVGDQSYFRNRVFPTMPD--IGKALDYFLATGNLKST 435

Query: 395  TGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHT 454
            TGLD  Q AG+ + A++LN LR++S FR VHRGA FA ++TT+VRKLLPE+WGF+CPVHT
Sbjct: 436  TGLDQMQAAGFAIVADKLNILRYMSHFRCVHRGAYFAEMKTTAVRKLLPEAWGFICPVHT 495

Query: 455  PDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPP 514
            PDG PCGLLNH+T  C   S   S   I+   ++  S+    +G+  I           P
Sbjct: 496  PDGAPCGLLNHLTRHCTPQSKAVSPAVIKQLRQVVHSLGVQEVGMHRIE----------P 545

Query: 515  AVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYL 574
             VL V LDG VVGV     IE V   LR  KV     +P+ LE+ ++P + GG YPGLYL
Sbjct: 546  PVLDVFLDGVVVGVANVKTIEAVALKLREYKVLGLHNVPEVLEIAFIPPAEGGVYPGLYL 605

Query: 575  FTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRN---AFPATHEE 631
            FT+P + +RPV ++      +   ELI   EQV+++I   D  +  R +       TH E
Sbjct: 606  FTTPTRMLRPVLHLG-----TNKRELISSLEQVYLDIGV-DIAECHRNHEKFGINYTHME 659

Query: 632  IHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTP 691
            I   GMLSVV++ TP+SD NQSPRNMYQCQM KQTMG   QA+ +RAD KLY L + QTP
Sbjct: 660  ISKHGMLSVVSSFTPFSDFNQSPRNMYQCQMGKQTMGIPSQAIPYRADNKLYVLNSGQTP 719

Query: 692  IVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETID 751
            +V    Y +Y +D+YP G NA+V V+AYTGYDMEDAMI+NK S+DRG  H ++ +TE +D
Sbjct: 720  VVHPRAYNEYNLDDYPLGNNAVVCVIAYTGYDMEDAMIINKGSIDRGFMHARVLKTEIVD 779

Query: 752  LSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTN 811
            L D    V +   L  R++   S    +D DGLP VG M+  G+P+ ++ D+   S   +
Sbjct: 780  LVDRSG-VSKAFGLLPRHRAENS--DFLDDDGLPRVGIMVEKGDPFYAVVDE-EQSNHIH 835

Query: 812  SRKGS----ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQL 867
              KG     ESV +  +A D    + + Q+  I     RNPIIGDKF+SRHGQKG+ SQ+
Sbjct: 836  RYKGEPARIESVRL-LLASDTSTKREV-QRIAITVSVNRNPIIGDKFASRHGQKGILSQM 893

Query: 868  WPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVK 927
             P  DMPF+  +G+ PD+I NPH FPSRMTI ML+ES+A K G LH +F D+TPF     
Sbjct: 894  LPSEDMPFTE-SGITPDIIFNPHGFPSRMTIGMLIESMAGKAGCLHERFYDSTPFQ---- 948

Query: 928  KTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRH 987
                    DE  + V+  GE LR  G+NY G E +YSG+ G EL  ++FIG V+YQRLRH
Sbjct: 949  -------FDEDDTAVEFFGEELRKAGYNYFGHERMYSGITGEELEVDVFIGNVFYQRLRH 1001

Query: 988  MVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDY 1047
            MVSDK+QVR+TG +D  TRQPIKGRKR GG+RFGEMERD+L+AHG A+LL DRL  CSD 
Sbjct: 1002 MVSDKYQVRATGPVDSRTRQPIKGRKRHGGVRFGEMERDALIAHGTAFLLQDRLLRCSDD 1061

Query: 1048 HVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVF 1107
              A VC  CG VL+ T I  Q  A R           +K  C +C+ SK ++ V +PYVF
Sbjct: 1062 SEATVCKSCGGVLSTTSI-AQSAASR----------IRKDVCLSCKDSKVVK-VRLPYVF 1109

Query: 1108 RYLAAELAAMNIKITLQLGD 1127
            RYL AELA MNI ++L + +
Sbjct: 1110 RYLGAELAGMNINMSLDVSE 1129


>gi|224008096|ref|XP_002293007.1| DNA directed RNA polymerase i, second largest subunit [Thalassiosira
            pseudonana CCMP1335]
 gi|220971133|gb|EED89468.1| DNA directed RNA polymerase i, second largest subunit [Thalassiosira
            pseudonana CCMP1335]
          Length = 1069

 Score =  840 bits (2169), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/1109 (42%), Positives = 653/1109 (58%), Gaps = 99/1109 (8%)

Query: 70   NFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMS 129
            NFG  P+M  ++ CHL G    +LV +KEE  E GGYFI+NG+ER  R + +P+ N+  S
Sbjct: 6    NFGMMPIMTMSKACHLYGKSPAELVKVKEEQTEFGGYFIVNGIERCVRLLQVPRANHATS 65

Query: 130  MVRSSFRDRREGYTDKAVVIRCVRK--DQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVG 187
            + RS++++R + YTD  V IRC R   D S++T  L+YL  G   L F  + +E+LLP+ 
Sbjct: 66   IQRSNYKNRGKLYTDLGVAIRCQRHNGDMSTITNTLHYLTTGGATLKFVARKQEFLLPLV 125

Query: 188  IVLKALVDTN---------DLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQD 238
            +V++AL   +         D E++N +           +G   +  V  R +++L E + 
Sbjct: 126  LVMRALSGGDGSTRGHGITDEELYNRIV----------QGDESNTFVRARAELLLREAKQ 175

Query: 239  LS-LTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFML 297
             + + T  +CL  +G  F+ +     S S   +   +I  YI +HL    DK    +FML
Sbjct: 176  FNGMQTPEECLAFVGSRFRLMSMKANSTSDVEIGHYIINRYILIHLPSYGDKLEYTLFML 235

Query: 298  QKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKK 357
            +KL+S        DN DSLQNQEILLPGHL+  ++KEK ++ L   +  +  E+  +  K
Sbjct: 236  RKLYSFAAGDCGVDNADSLQNQEILLPGHLMCTFVKEKFDETLANIRLGLLKEMRMDYTK 295

Query: 358  FDFFNLANIK---KVMEKN---PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAER 411
                ++  +K   K +++     S  IG  ++  L TG + + TGLDL Q +GYT+ AE+
Sbjct: 296  L-LTSVPQVKFWTKCVDRYGMLSSGGIGKKVQHFLSTGNIISSTGLDLMQVSGYTIVAEK 354

Query: 412  LNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCR 471
            LNFLRF + FR+VHRG  F  ++TT+VRKLLP+ WGFLCPVHTPDG PCGLL+HM   C+
Sbjct: 355  LNFLRFCAHFRSVHRGQFFMEMKTTAVRKLLPDQWGFLCPVHTPDGGPCGLLSHMALKCQ 414

Query: 472  VASY-YDSR-GNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAV-----LSVLLDGR 524
              +Y  D++ G ++D  ++       LI  G+ P+           +     L V+++GR
Sbjct: 415  CMAYPADAKDGEMQDLDEL-------LISWGVTPAGTGGEGGDGRTISNFTNLPVMVNGR 467

Query: 525  VVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL-GGAYPGLYLFTSPPKFVR 583
            VVG       + +   LR LKV     +P  LEV Y+P  + GG YPGL+LFT   + VR
Sbjct: 468  VVGGASVKLCKSIAFQLRSLKVQEKPTVPPTLEVAYIPPGMKGGPYPGLFLFTIAARVVR 527

Query: 584  PVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEEIHPTGMLSVVA 642
            PV         +   E IGP EQ FM+I C P+    G       TH+E+ P  MLS++A
Sbjct: 528  PVLQ-----RATGRTEYIGPMEQPFMDIACLPEDIREGI-----TTHQELDPANMLSLIA 577

Query: 643  NLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYG 702
            +LTP+SD+NQSPRNMYQCQM KQTMG    +L +RAD K+Y +QTPQ P+V+T  + +Y 
Sbjct: 578  SLTPFSDYNQSPRNMYQCQMGKQTMGTPCHSLPYRADNKMYKIQTPQAPLVQTAVHGEYK 637

Query: 703  IDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV--- 759
            +DEYP GTNA+VAVL+YTG+DMEDAMILNKSS +RG  H  +Y+T  I L +   +V   
Sbjct: 638  MDEYPNGTNAVVAVLSYTGFDMEDAMILNKSSYERGFGHASVYKTIKIRLCNKTKRVKIP 697

Query: 760  --DRGQ-KLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGS 816
              + G    FR +     ++  +D DGLP VGQ +  G+    + D   N       K  
Sbjct: 698  PENEGDLPTFRHD----PVYPHLDEDGLPRVGQWVEEGDALYCLADDDGNKGYPGKHKEK 753

Query: 817  ESVFVDYV--------AVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLW 868
            E   V  +        +   + SK      +I  R  RNP+IGDKFSSRHGQKGV S LW
Sbjct: 754  EKACVQTIRRLNTGGTSSASRGSKGTDDALSITLRFPRNPVIGDKFSSRHGQKGVLSILW 813

Query: 869  PDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKK 928
            P  DMPFS  +G+ PD+IINPHAFPSRMTI ML+ES+A K G+ HG F DATPF+     
Sbjct: 814  PQTDMPFS-ESGISPDVIINPHAFPSRMTIGMLIESMAGKSGASHGMFQDATPFSF---H 869

Query: 929  TNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHM 988
             +GD      K  VD  GE L+  G+NY+G E LYSGV G  +  +++IG V+YQRLRHM
Sbjct: 870  ESGD------KIAVDYFGEQLQAAGYNYYGSEPLYSGVSGCLMHADLYIGVVFYQRLRHM 923

Query: 989  VSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYH 1048
            VSDK+QVR+TGT++ +TRQPIKGRK+GGGIR GEMERDSLL+HG A+LLHDRL  CSD H
Sbjct: 924  VSDKYQVRATGTVNPLTRQPIKGRKKGGGIRLGEMERDSLLSHGTAFLLHDRLLNCSDRH 983

Query: 1049 VADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSK------------ 1096
            +A  C  CG +L+       +R+     G   + A K      C+ +K            
Sbjct: 984  IAYACRRCGDLLSPA----TERSTILSAGQKVSDATKHQLRVFCRNAKCCNAVRDESNDD 1039

Query: 1097 GMETVAMPYVFRYLAAELAAMNIKITLQL 1125
             ++ + +PYV+RYLA ELAAMNIK+ + +
Sbjct: 1040 AVQPIILPYVYRYLANELAAMNIKMKMNI 1068


>gi|346319101|gb|EGX88703.1| DNA-directed RNA polymerase I 135 kDa polypeptide [Cordyceps
            militaris CM01]
          Length = 1214

 Score =  839 bits (2167), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/1147 (41%), Positives = 672/1147 (58%), Gaps = 130/1147 (11%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGS-PVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
            CR+  ++Y G+L A  E+      S   VR+    GQ P+MLK                 
Sbjct: 118  CRERHVTYRGRLSATFEYNINGGDSHEFVRD---LGQIPIMLKR---------------- 158

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
            KEEA E+GGYF++NG+E++ R + L K+N+PM++ R SF++R  GY+   +++R VR D+
Sbjct: 159  KEEAEELGGYFVVNGIEKIIRMLQLNKRNFPMAINRPSFQNRGPGYSPFGIILRSVRPDE 218

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
            +S T  L+YL +G+V   F  +  EYL+PV +++KALV+TND EIF  +      K    
Sbjct: 219  TSQTNVLHYLTDGNVTFRFSWRKNEYLVPVVMIMKALVETNDREIFEGVIGPMGSK---- 274

Query: 217  KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
              A  +  +++RV+++L   +   L ++ Q   ++G+ F+ V+   ++ S Y V    +R
Sbjct: 275  --ATENTFLTDRVELLLRTYKSYGLYSKSQTRAYLGQKFRVVLGVPETMSDYDVGTEFLR 332

Query: 277  DYIFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
                VHL + N       +KF +L+FM++KL++LV      DNPD++QNQEILL G L  
Sbjct: 333  RITLVHLGNVNVKDKQDIEKFKMLLFMIRKLYALVAGECAVDNPDAIQNQEILLGGFLYG 392

Query: 330  IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKK---VMEKNPSKQIGTSIETML 386
              LKEK +++L    +L   E         F +    K+    + +  ++ +G S+E  L
Sbjct: 393  QILKEKFDEFLGVNVRLSLREYFRRHPSVAFTSEEFRKEFPAAIFRKANENLGNSLEYFL 452

Query: 387  KTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESW 446
             TG L + +GLDLQQ AG+TV AE+LNFLRFI+ FR VHRGA FA L+TT+VRKLLPESW
Sbjct: 453  STGNLVSPSGLDLQQVAGFTVVAEKLNFLRFIAHFRMVHRGAFFAQLKTTAVRKLLPESW 512

Query: 447  GFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLP 506
            GF+CPVHTPDG PCGLLNH+   C++ + +       D SK+    L V +G     ++ 
Sbjct: 513  GFMCPVHTPDGAPCGLLNHLAHKCKIMTDH------IDVSKV--PALVVTLG-----AVD 559

Query: 507  KLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLG 566
                S   +V+ ++LDG+++G     E  ++   LR  KV     +P  LE+GYVP S G
Sbjct: 560  TSTASTAESVV-IMLDGQILGWCKPKESLRIADCLRYWKVEGNHGVPLHLEIGYVPPSTG 618

Query: 567  GAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAF 625
            G+YPG+Y+ ++P + +RPV+ + L  E+     ++GP+EQ +M I   P+  + G     
Sbjct: 619  GSYPGIYMTSTPSRMIRPVKYLPLQKED-----MVGPYEQPYMSIAVVPEEIESGL---- 669

Query: 626  PATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHL 685
             +TH E  PT +LS++AN+TP+SD NQSPRNMYQCQM KQTMG    AL  R D K Y L
Sbjct: 670  -STHVEFDPTNILSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPGTALVHRTDNKSYRL 728

Query: 686  QTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIY 745
            QT QTPIVR   +  YG D +P GTN +VAV++YTGYDM+DAMI+NKS+ +RG  HG +Y
Sbjct: 729  QTGQTPIVRAPLHNAYGFDNFPNGTNVVVAVISYTGYDMDDAMIINKSAHERGFGHGTVY 788

Query: 746  QTETIDLSDD-----GNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSI 800
            +T+ I L DD        V +       +  + S   ++D DGLP+VG+++  G+  C+ 
Sbjct: 789  KTKKISLKDDSRTKASKSVIKAFGFAPHSFVSASYQGMLDDDGLPHVGRLVQDGDVICA- 847

Query: 801  YDKTTNSWRTN-----------SRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNP 848
            +   T  +R +             K  E+ F++ V +    + + P Q  +I+FR  R P
Sbjct: 848  WHTVTPDYRGDLVNLDGITHYEKYKDGETGFIEEVRLIGAETGSEPLQTISIKFRIPRAP 907

Query: 849  IIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
            IIGDKFSSRHGQKGVCSQ WP IDMPFS  +GM+PD+IINPHAFPSRMTI M +ES+A K
Sbjct: 908  IIGDKFSSRHGQKGVCSQKWPAIDMPFSE-SGMQPDVIINPHAFPSRMTIGMFVESLAGK 966

Query: 909  GGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYG 968
             G+LHG   D+TPF  + + T GD             G  L   G+NYHG E +YSG+ G
Sbjct: 967  AGALHGLAQDSTPFKFNEEHTAGDY-----------FGHQLMKAGYNYHGNEPMYSGITG 1015

Query: 969  TELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSL 1028
             EL  +I+IG VYYQRLRHMV+DKFQVR+TG +   T QPIKGRKRGGGIR GEMERD+L
Sbjct: 1016 EELAADIYIGVVYYQRLRHMVNDKFQVRTTGPIVPTTGQPIKGRKRGGGIRVGEMERDAL 1075

Query: 1029 LAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPAR--APKK 1086
            LAHG A+LL DRL  CSD+  + +C  CGS L+   + P       +    P+R  AP  
Sbjct: 1076 LAHGTAFLLQDRLLNCSDFTKSWICRRCGSFLS---VQPT------VSQFAPSRKKAPSV 1126

Query: 1087 VTCHACQTSKGME----------------------------TVAMPYVFRYLAAELAAMN 1118
            V C  C      E                             V +P   +YL  ELAAM 
Sbjct: 1127 VRCRHCAVRLDDEDGIDLTEIQGEIWEDGQGHSWVGGDQTTQVIVPGALKYLDVELAAMG 1186

Query: 1119 IKITLQL 1125
            +K+  ++
Sbjct: 1187 VKLKYKI 1193


>gi|391330640|ref|XP_003739764.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 [Metaseiulus
            occidentalis]
          Length = 1151

 Score =  839 bits (2167), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/1173 (40%), Positives = 673/1173 (57%), Gaps = 133/1173 (11%)

Query: 12   LRELVRHHIESFDYMLDEGL---------------------------------SEMFDHC 38
            L+E+ + H+ESFD+ ++EGL                                 S+M  +C
Sbjct: 43   LQEVAKAHLESFDWAMEEGLDLTLAEIEPLEFMVGKSRVKIRVSKAEVHPPAVSKMAVNC 102

Query: 39   RQAKI----------SYTGKLMADVEFQYLDAG---SPVVRERFNFGQFPVMLKTRRCHL 85
            R  +I          +Y G+L  ++ F +   G    P+ R   + G+ P+M+K+R+C+L
Sbjct: 103  RSLQIFPKECRIRRVTYRGRL--ELRFDWWLNGLKQEPITR---SCGEIPIMVKSRKCNL 157

Query: 86   QGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDK 145
             G    +L+   EE  E GGYF++NG E+V R +I+ ++NYP++M R+ ++ R   +++ 
Sbjct: 158  HGMSPDQLIERGEELEEFGGYFVVNGNEKVLRLLIMQRRNYPIAMARNGWKGRGSMFSEF 217

Query: 146  AVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHL 205
             V +R  RKD SS  + L+YL NG+V++    + + Y +P+ ++LKALVD +D EI+  L
Sbjct: 218  GVSLRSCRKDHSSQNMVLHYLTNGTVQVMITNRKELYFVPIVLLLKALVDKSDYEIYKSL 277

Query: 206  TCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSE 265
                       KG          +  +L  VQ  ++ T     + IG+ F+  +   +  
Sbjct: 278  I----------KGFEDDSFYKGCITNMLRLVQKENILTHQDAKEFIGDKFRIKVYVPEWA 327

Query: 266  SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPG 325
            +   V + ++   + VHL+DN  KFNL+ FM++KLF+   +    ++ DS  NQEILLPG
Sbjct: 328  TNSDVCDKLLDRCVCVHLDDNESKFNLMCFMVRKLFAAAKNKCALESADSTMNQEILLPG 387

Query: 326  HLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
            HL    LKEK+E  L  G KL  ++    G      NLAN+      N     G     M
Sbjct: 388  HLYLNVLKEKIEGLLL-GVKLSTEKKLQRGDP----NLANVNYSFMSNALGNAGDLTHAM 442

Query: 386  ---LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLL 442
               L TG L +++GL LQQ +G+T+ AE+LNF R+I  FR VHRG+ F  +RTTSVRKLL
Sbjct: 443  NYFLSTGNLISKSGLSLQQVSGFTIIAEKLNFWRYIGHFRCVHRGSFFMQMRTTSVRKLL 502

Query: 443  PESWGFLCPVHTPDGEPCGLLNHMTSTCR-VASYYDSRGNIRDFSKMRTSILRVLIGVGM 501
            PE+WGFLCPVHTPDG PCGLL H+++ C  V   Y ++            I+  L  +GM
Sbjct: 503  PEAWGFLCPVHTPDGGPCGLLLHLSAMCEIVVKQYPTK-----------PIVETLENLGM 551

Query: 502  IPSLPKLVKSGPPAVL------SVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDD 555
            I       +   P  L       V LDGR +G I   ++EK+   LR LK S    I   
Sbjct: 552  I-------EENSPTSLDFRDSYQVQLDGRCLGWIHEDDVEKLHVTLRYLKASGK--IAPT 602

Query: 556  LEVGYVPLSLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCP 614
            LE+  +P +   + YPG++LF++P + +RPV N       +Q +E IG  EQV M+I C 
Sbjct: 603  LEICVIPRTEQNSLYPGIFLFSTPARMMRPVLN-----NRTQAVEWIGTLEQVHMDI-CV 656

Query: 615  DGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQAL 674
               +         TH+E+  T MLS++AN  P+ D NQSPRNMYQCQM KQTMG  + + 
Sbjct: 657  VPEEAHEL----TTHQELSETAMLSILANQIPWPDFNQSPRNMYQCQMGKQTMGSPMHSY 712

Query: 675  KFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSS 734
            + RAD KLY L  PQ+ +VR   Y  Y +DEYP+GTNAIVAV++YTGYDMEDAM+LNK S
Sbjct: 713  RNRADNKLYRLMNPQSALVRPTAYDHYKMDEYPSGTNAIVAVISYTGYDMEDAMVLNKMS 772

Query: 735  VDRGMCHGQIYQTETIDLSDDGNKVD-RGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHP 793
            V+RG   G +Y+TET++L      V  +   +F R    ++L   +D DGLPY+G  +  
Sbjct: 773  VERGFKAGCVYKTETVNLRKLAGDVGVQTSCVFGRKAGDEALAKFVDYDGLPYIGSRVVH 832

Query: 794  GEPYCSIYDKTTNSWRTNSRKGSE-SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGD 852
            G+P C   + TT   +      SE +  V+   +      +  Q+    +   R P+IGD
Sbjct: 833  GDPVCCYINLTTGQLKVVKYHSSEPATIVEVKILGNDCGTDTLQQVQFTYLIDRTPMIGD 892

Query: 853  KFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSL 912
            KF+SR GQKGVCS LWP  +MPF+  +GM PD+I NPH FPSRMTI M++ES+A K  +L
Sbjct: 893  KFASRAGQKGVCSTLWPTENMPFTE-SGMVPDIIFNPHGFPSRMTIGMMVESMAGKSAAL 951

Query: 913  HGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELT 972
            HG   DA+PF  S           E     +  GE+L+  GFN+HG E +YSGV G E+ 
Sbjct: 952  HGYVHDASPFKFS-----------EDDPSSEYFGELLQKAGFNHHGTERIYSGVDGREMD 1000

Query: 973  CEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHG 1032
             +IF G VYYQRLRHMV+DK+QVR+TG +D +TRQP+KGRKRGGGIRFGEMERDSLLAHG
Sbjct: 1001 ADIFFGVVYYQRLRHMVADKYQVRTTGPIDSLTRQPVKGRKRGGGIRFGEMERDSLLAHG 1060

Query: 1033 AAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHAC 1092
             A+LL DRL  CSD  +  VC+ CGSVL+  ++ P++  +R              TC  C
Sbjct: 1061 TAFLLQDRLFNCSDKTLCQVCAACGSVLSPVYMKPEQSVVR------------IWTCSDC 1108

Query: 1093 QTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
            ++SK +  + +PYVFRYL AELA++N+KI L +
Sbjct: 1109 KSSKDIVVIPIPYVFRYLVAELASVNMKIKLDV 1141


>gi|198426188|ref|XP_002131003.1| PREDICTED: similar to RNA polymerase I polypeptide B [Ciona
            intestinalis]
          Length = 1144

 Score =  838 bits (2166), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/1180 (39%), Positives = 678/1180 (57%), Gaps = 119/1180 (10%)

Query: 2    ARKKSADFEPLRELVRHHIESFDYMLDEGLSEMF-------------------------- 35
             + + A   P+++L R H++SF++ +++G+  +                           
Sbjct: 27   GKPEEAQHPPIQDLTRPHVDSFNWFVNDGVKLLAKGLAPLEVLINNDRLALSFTDISVEK 86

Query: 36   -----------------DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVML 78
                               CRQ   +Y  K+ A + F+        +      G  P+M+
Sbjct: 87   PKIEDGFRNCRTTQVYPSECRQRGATYQAKIQASLSFEINGMKQGTIPR--CLGTIPIMV 144

Query: 79   KTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDR 138
            K+ RC+L G   ++LV  +EE  EMGGYF++NG E+V R +I+ ++NYP+ +VR S+++R
Sbjct: 145  KSDRCNLHGLSPKELVEKQEEEQEMGGYFVVNGNEKVVRMLIMQRRNYPVGIVRPSWKNR 204

Query: 139  REGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTND 198
             + YT+  V +R + +DQ++    L+YL NG+V +  + + + + LP+ ++LKALV  +D
Sbjct: 205  GQNYTEFGVSVRSMTEDQTTAPFVLHYLSNGTVTICVYHRKEMFFLPLVLILKALVPFSD 264

Query: 199  LEIFNHL----------TCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCL 248
             +I+  L          TCC                    V+ +L + Q  +L  +   L
Sbjct: 265  RDIYKELIKTKEDDTYFTCC--------------------VQNMLRQAQAYNLFEQKDFL 304

Query: 249  QHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTS 308
            +++GE F+  ++     S   +A  +++ ++ +HL+ N DKF L+ FM +K+F L     
Sbjct: 305  RYLGEKFRIKLNRASWYSDTDIAHFMLKHHVLIHLDSNEDKFRLISFMTRKVFDLALGKC 364

Query: 309  VSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKK 368
            + D+ DS+QNQE+LLPGHL  + +KEKL  WL    +++  +      K     L+++  
Sbjct: 365  MPDDADSVQNQEVLLPGHLFQMVIKEKLNLWLLTLSRVVLRKATAAKAKTAIPGLSSVLI 424

Query: 369  VMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGA 428
                +    + +++  +L TG L + TGL L Q AG TV A++LN++R+IS FR +HRGA
Sbjct: 425  QNSMSSVPDVTSAMSYLLATGTLVSNTGLGLMQFAGLTVIADKLNYMRYISHFRCIHRGA 484

Query: 429  SFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKM 488
             FA +RTT+VRKLLPESWGFLCPVHTPDG PCGL+NHM+  C + ++  S          
Sbjct: 485  FFAQMRTTTVRKLLPESWGFLCPVHTPDGSPCGLMNHMSFLCEIVTHPPSND-------- 536

Query: 489  RTSILRVLIGVGMI-PSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVS 547
              ++L +L  +GM+ P+  ++   G      V+LDG+++G +P  +  + V  +R  K  
Sbjct: 537  --AMLPLLNRLGMLSPTTSEVAGFG--KFYPVILDGKLIGWMPVHQGHQAVNVIRCKKAR 592

Query: 548  AASVIPDDLEVGYVPLS-LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQ 606
                +P  LE+  +  +     YPGLYL +   + VRPV N+      +  +E+IG FEQ
Sbjct: 593  GQDNVPITLEICLIEYTGKPTQYPGLYLMSQEARMVRPVMNLI-----TGTVEMIGSFEQ 647

Query: 607  VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQT 666
            V+M I C    +  +      TH+E+    +LS VA+LTPYSD NQSPRNMYQCQM KQT
Sbjct: 648  VYMNI-CIIPEEAHKM----TTHQELSQHSILSAVASLTPYSDFNQSPRNMYQCQMGKQT 702

Query: 667  MGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMED 726
            MG   QA+ +RAD KLY +QTPQ  +VR   Y  Y +D +P G NA+VAV++YTGYDMED
Sbjct: 703  MGTPCQAIAYRADNKLYRIQTPQAALVRPYMYDHYKMDNFPFGQNAVVAVISYTGYDMED 762

Query: 727  AMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPY 786
            AMILNK S DRG  +G IY+T+ IDLS                KD +     + +DGLP 
Sbjct: 763  AMILNKGSFDRGFAYGTIYKTDLIDLSSKVGDRTVNVTFGTNPKDDRFPDLNLGADGLPA 822

Query: 787  VGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNS-KNLPQKANIRFRHT 845
            VGQ +  G+ Y S  D + +  +     G E+ +VD V V   N+     ++ +I  R  
Sbjct: 823  VGQRLLTGDNYYSYIDHSNSEMKVVKYSGQETGYVDSVRVLSNNAGTGHFKRVSIVLRVQ 882

Query: 846  RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
            RNPIIGDKF+SRHGQKG+CSQ WP  ++PF+  +GM PD++ NPH FPSRMTI M++ES+
Sbjct: 883  RNPIIGDKFASRHGQKGICSQKWPMANLPFTE-SGMFPDIVFNPHGFPSRMTIGMMIESM 941

Query: 906  AAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSG 965
            A K  ++HG   DATPF  +           E K  ++  G++L   G+NY+G E +YSG
Sbjct: 942  AGKSAAMHGHCYDATPFTFT-----------EDKPAIEFFGDLLTEAGYNYYGTETMYSG 990

Query: 966  VYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMER 1025
            V G E+  +IFIG VYYQRLRHMVSDKFQVR+TG +D IT+QP+KGRKR GGIRFGEMER
Sbjct: 991  VSGLEMEAQIFIGIVYYQRLRHMVSDKFQVRTTGPVDMITQQPVKGRKRAGGIRFGEMER 1050

Query: 1026 DSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPK 1085
            D+LLAHG A LL+DRL T SD   A +C  CGS+LT T I       +E  G     + +
Sbjct: 1051 DALLAHGCAMLLYDRLLTSSDCSKARLCEKCGSLLT-TMIE------KEQDGTHVHLSEQ 1103

Query: 1086 KVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
            K  C AC T   +  V +P+V+RYL  ELAAMNIK  L +
Sbjct: 1104 KWICRACHTGDHIVLVDIPFVYRYLVNELAAMNIKTILSV 1143


>gi|13929088|ref|NP_113961.1| DNA-directed RNA polymerase I subunit RPA2 [Rattus norvegicus]
 gi|3914801|sp|O54888.1|RPA2_RAT RecName: Full=DNA-directed RNA polymerase I subunit RPA2; Short=RNA
            polymerase I subunit 2; AltName: Full=A127; AltName:
            Full=RPA135
 gi|2739048|gb|AAB94600.1| RNA polymerase I 127 kDa subunit [Rattus norvegicus]
          Length = 1135

 Score =  832 bits (2148), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/1183 (40%), Positives = 653/1183 (55%), Gaps = 152/1183 (12%)

Query: 12   LRELVRHHIESFDYMLDEGLSEMFD----------------------------------- 36
            L++L R H++SF+Y + EGLS                                       
Sbjct: 35   LQDLTRAHVDSFNYAVLEGLSHAVQAIPPFEFAFKDERISLTIVDAAISPPAVPKGTICK 94

Query: 37   -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
                    CR  + +Y GKL AD+ +        ++++    G  P+M+K++ C+L    
Sbjct: 95   ELNIYPAECRGRRSTYRGKLTADISWAVNGVPKGIIKQFL--GXVPIMVKSKLCNLYNLP 152

Query: 90   SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
             Q L+   EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R  ++ R  GYT   V I
Sbjct: 153  PQVLIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKSRGLGYTQFGVSI 212

Query: 150  RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
             CVR++ S+V + L+Y+ NG+V L F  + + + LP+G  LKALV  +D +IF  L    
Sbjct: 213  HCVREEHSAVNMNLHYVENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269

Query: 210  DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
                 KE+ +     VS+ ++I++ E       T+ Q L ++GE F+  +          
Sbjct: 270  ---KGKEEDSFFKNSVSQMLRIVMEE----GCHTQKQVLDYLGERFRVKLSLPDWYPNAE 322

Query: 270  VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
             AE +    I +HL  N DKF LL  M +KLF+L     + DNPDSL NQE+L PG L  
Sbjct: 323  AAEFLFNQCICIHLKSNTDKFYLLCLMTRKLFALARGECMEDNPDSLVNQEVLTPGQLFL 382

Query: 330  IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
            ++LKEK+E+WL   K  +    +      +  NL  I  +       ++    E +L TG
Sbjct: 383  MFLKEKMENWLLSIKIALDKRAQKTNVSINNENLMKIFSM-----GTELTRPFEYLLATG 437

Query: 390  RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
             L ++TGL   Q +G  V A++LNF+R++S FR VHRGA FA +RTT+VRKLLPESWGFL
Sbjct: 438  NLRSKTGLGFMQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRKLLPESWGFL 497

Query: 450  CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
            CPVHTPDG PCGLLNH+T+ C V + +              SI  +L G+G+ P     V
Sbjct: 498  CPVHTPDGAPCGLLNHLTAVCEVVTKF----------VYTASIPALLCGLGVTP-----V 542

Query: 510  KSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
             + P    S    VLLDG +VG +      +V   LRR KV                 SL
Sbjct: 543  DAAPCRPYSDCYPVLLDGVMVGWVDKELAPEVADTLRRFKVLRERRCS----------SL 592

Query: 566  GGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRR--- 622
             G  P  +   + P       + SL + E+                 C + G G RR   
Sbjct: 593  DGGGPDSHDRKAKPVPRAVPLHHSLQAGEA-----------------CAEPGAGQRRARW 635

Query: 623  NAFPATHEEIH----------------PTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQT 666
            N   A HE  H                P+    V+AN  P+SDHNQSPRNMYQCQM KQT
Sbjct: 636  NYGAALHEHCHLRGRGFWWSFHTPGALPSQPAEVIANFIPFSDHNQSPRNMYQCQMGKQT 695

Query: 667  MGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMED 726
            MGF +   + R+D KLY LQTPQ+P+VR   Y  Y +D YP GTNAIVAV++YTGYDMED
Sbjct: 696  MGFPLLTYQDRSDNKLYRLQTPQSPLVRPCMYDHYDMDNYPIGTNAIVAVISYTGYDMED 755

Query: 727  AMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPY 786
            AMI+NK+S +RG  HG +Y++E IDLS+   + D       +  D + +   +D+DGLP+
Sbjct: 756  AMIVNKASWERGFAHGSVYKSEFIDLSEKFKQGDDSLVFGVKPGDPRVMQK-LDNDGLPF 814

Query: 787  VGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHT 845
            +G  +  G+PY    +  T        K  E+  VD + V   ++ +   K   +  R  
Sbjct: 815  IGAKLEFGDPYYGYLNLNTGEGFVVYYKSKENCVVDNIKVCSNDTGSGKFKCVCVTVRVP 874

Query: 846  RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
            RNP IGDKF+SRHGQKG+ S+LWP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+
Sbjct: 875  RNPTIGDKFASRHGQKGILSRLWPAEDMPFTE-SGMMPDILFNPHGFPSRMTIGMLIESM 933

Query: 906  AAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSG 965
            A K  +LHG   DATPF  S           E  S ++  GEML+  G+N++G E LYSG
Sbjct: 934  AGKSAALHGLCHDATPFIFS-----------EENSALEYFGEMLKAAGYNFYGTERLYSG 982

Query: 966  VYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMER 1025
            + G EL  +IFIG VYYQRLRHMVSDKFQVR+TG  D++T QPI GR   GGIRFGEMER
Sbjct: 983  ISGMELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFGEMER 1042

Query: 1026 DSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP- 1084
            D+LLAHG ++LLHDRL  CSD  VA VC  CGS+L+     P           PP+ +  
Sbjct: 1043 DALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKP-----------PPSWSAM 1091

Query: 1085 --KKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
              +K  C  C  S  ++TV++PYVFRY  AELAAMNIK+ L +
Sbjct: 1092 RNRKYNCTVCGRSDSIDTVSVPYVFRYFVAELAAMNIKVKLDV 1134


>gi|393908209|gb|EJD74955.1| DNA-directed RNA polymerase [Loa loa]
          Length = 1128

 Score =  828 bits (2140), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/1112 (41%), Positives = 660/1112 (59%), Gaps = 88/1112 (7%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CRQ  ++Y G L  ++E      G+ +       G+ P+MLK+ RCHL+    ++L++  
Sbjct: 73   CRQRGLTYRGPLKVNIEICL--NGAKMDFCEVIVGEVPIMLKSNRCHLRWLTREQLIAHG 130

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EE  E GGYFI  G E+V R ++  ++NYP+ +VR SFR++   +T   V+IRCVR + S
Sbjct: 131  EEGTEKGGYFICKGNEKVIRLLVANRRNYPIGLVRHSFREKGSLFTQYGVMIRCVRGNYS 190

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            +  + L+YL +G++ +    + + + LP   V+K+L   ND  I  H+  C         
Sbjct: 191  AAMMTLHYLESGTIVIALQYRRELFYLPFMYVIKSLTSMNDQCIMEHMIRCRP------- 243

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETV--- 274
               G       V  +LA   D  +  +   L  IGE F+  +        + V+E V   
Sbjct: 244  ---GDHFWKGCVTTMLALCSDDGIVNQKAALTAIGERFR--VATQDRVGPWEVSEDVGRF 298

Query: 275  -IRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLK 333
             +R  + +HL+++ DKF LL +M QKL +L      +++PD+ Q QE  + GH++ + ++
Sbjct: 299  LLRVCVAIHLDNDEDKFFLLSYMAQKLIALTKGECAAESPDNPQFQEAAVSGHILLLIIR 358

Query: 334  EKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLAT 393
            E+LE+ L   ++ I+ E +   + F   +   + + M    S +I   +E  L TG L +
Sbjct: 359  ERLENTLNIARRKIELEAKRKAESF-LLSSHELIRAMGTQRSGEITRGLEYFLATGNLIS 417

Query: 394  QTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVH 453
            + GL LQQ  G++V AER+N LRF+S FRA+HRGA F  +RTT VRKL PE+WGF+CPVH
Sbjct: 418  RGGLTLQQNNGFSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICPVH 477

Query: 454  TPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIG-VGMIP-SLPKLVKS 511
            TPDG PCGLLNH+ ++ R+ ++Y +           TS L  L+G +GM+  S   L+ +
Sbjct: 478  TPDGAPCGLLNHVAASVRIVTHYSN-----------TSELPKLLGELGMVGHSAITLLPA 526

Query: 512  GPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYV-----PLSLG 566
             P  +  VL+DG+ VG I  S+   V   LR LKVS    +P   E+  V     P+++ 
Sbjct: 527  EP--MYPVLVDGKFVGHISQSQASYVEQQLRVLKVSDDIRVPSCAEIILVEKSIDPINIL 584

Query: 567  GAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFP 626
              YPGLY+FT P   +RPV+   LPS+    +E IG FEQV++ I C D  +        
Sbjct: 585  VQYPGLYIFTEPGHLMRPVK--YLPSDR---VEFIGTFEQVYLSI-CIDPEEA---EPNV 635

Query: 627  ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQ 686
              H+EIHP+ + S  ANL P+ DHNQSPRN+YQCQM KQTMG  V A  +RAD K+Y LQ
Sbjct: 636  TMHQEIHPSCLFSFAANLIPFPDHNQSPRNVYQCQMGKQTMGTPVHAWNYRADNKMYRLQ 695

Query: 687  TPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQ 746
             PQ PIV+   Y KYGIDEYP GTNA VAV++YTGYDMEDAM++NKSS +RG  HG + +
Sbjct: 696  FPQNPIVKPEPYEKYGIDEYPLGTNACVAVISYTGYDMEDAMVINKSSYERGFAHGSVIK 755

Query: 747  TETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN 806
             E ++L++      R  +      D ++    ID DGLP  G++   G+PY S+YD  TN
Sbjct: 756  VERVNLTE-----GRSAECPIFLCDPENPQKTIDLDGLPIPGRLYMEGDPYYSVYDIDTN 810

Query: 807  SWRTNSRKGSESVFVDYVAVDMKNSKNLPQK-----ANIRFRHTRNPIIGDKFSSRHGQK 861
            S++ +  K +E+ F   V + ++  +N+        A I++R  RNPIIGDKF+SRHGQK
Sbjct: 811  SYKIHKYKYAEAAFCGSVRI-VEEGENVGANKGKCHALIQWRTRRNPIIGDKFASRHGQK 869

Query: 862  GVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATP 921
            G+ S LWP   MPFS  +GM PD+I NPH FPSRMTI M++ES+A K G++HG   D++P
Sbjct: 870  GINSFLWPTESMPFSE-SGMVPDIIFNPHGFPSRMTIGMMIESMAGKAGAMHGSTYDSSP 928

Query: 922  FANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVY 981
            F             +E K+ +D  G++L   G+NY+G E +YSGV G E+  +IF G VY
Sbjct: 929  FV-----------FNEKKTAIDHFGQLLVRAGYNYYGNETMYSGVDGREMEVQIFFGIVY 977

Query: 982  YQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRL 1041
            YQRLRHM++DKFQVRSTG  D +T QP+KGRK+GGGIRFGEMERD+++AHGAA+ L DRL
Sbjct: 978  YQRLRHMIADKFQVRSTGPTDPVTLQPVKGRKKGGGIRFGEMERDAMIAHGAAFTLQDRL 1037

Query: 1042 HTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARA--------PKKVTCHACQ 1093
              CSD  +A +C+ CGS+++          +R    LP  R          ++  C  C 
Sbjct: 1038 FNCSDRDIAHICARCGSMIS---------TLRCSKMLPEHRNSENSVLNYSEREMCLLCG 1088

Query: 1094 TSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
                +  V +P VFRYL AELAAMN+++ + +
Sbjct: 1089 KDDEVCPVEVPRVFRYLVAELAAMNVRLQISV 1120


>gi|328868020|gb|EGG16401.1| RNA polymerase I [Dictyostelium fasciculatum]
          Length = 1010

 Score =  828 bits (2139), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/1073 (41%), Positives = 646/1073 (60%), Gaps = 88/1073 (8%)

Query: 77   MLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFR 136
            M+++R CHL+G    +LVS  EEA EMGGYF++NG E++ R ++  K N+P+++ R  + 
Sbjct: 1    MVRSRLCHLEGLTPDELVSNHEEAMEMGGYFVVNGNEKLIRMLVANKGNHPVALQRKGWT 60

Query: 137  DRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDT 196
             R  GYT   + IR V  D++S+T  L+YL +G V   F  +  EY LPV ++L+ L DT
Sbjct: 61   SRGPGYTKYGITIRSVLPDRTSMTNALHYLADGQVTYRFLYKRHEYFLPVAMLLRILGDT 120

Query: 197  NDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ 256
             D EI+ H+           +G   +  +++R++++L E +   + T+ + L ++G  F+
Sbjct: 121  TDKEIYQHVV----------QGDTENTFLTDRIELMLREQRIDHVNTQAEALDYLGSRFR 170

Query: 257  PVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
                   + +   +AE +I +YI VHL +  DKFNL+  M+QKL+S V   S  DN D+ 
Sbjct: 171  HKAFLPDNFTNRQIAEYMINNYILVHLPNWRDKFNLICLMVQKLYSSVQGKSDCDNIDAT 230

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
               E+LL GHL    LKE+L+++L                +F F +   I+K   KNP+ 
Sbjct: 231  SFHEVLLGGHLFCSMLKERLQEYLET-------------VRFHFLHGVEIEKKNGKNPNH 277

Query: 377  Q------------IGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAV 424
            +            IG   E+ L TG LA+ +GLD+QQ +G+T+ AE+LNFLR+IS FR++
Sbjct: 278  EAILKKSFDRAGAIGPKFESFLATGNLASNSGLDVQQTSGFTIIAEKLNFLRYISHFRSI 337

Query: 425  HRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRD 484
            HRGA FA ++T+S+RKL+PES+GFLCPVHTPDG PCGLLNH++S C +          R 
Sbjct: 338  HRGAFFATMKTSSIRKLMPESFGFLCPVHTPDGAPCGLLNHLSSNCLITK---DPLQERK 394

Query: 485  FSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRL 544
              +   ++ + L+  G+  +  +   +  P  L V  +GR++G+      +++V  LR L
Sbjct: 395  VLESNLTLTKFLLSNGV--TSIETTSTFRPGSLPVTFNGRLIGMADEDTCDELVNTLRYL 452

Query: 545  KVSAASVIPDDLEVGYVPLS----LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIEL 600
            +      +P  LE+ Y P +    +GG +PG+ LF++  +F+RPV N+     +S   EL
Sbjct: 453  RSVGHENVPSTLEIAYAPKNRPGIVGGQFPGISLFSTGARFMRPVINV-----KSGKQEL 507

Query: 601  IGPFEQVFMEIRC-PDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQ 659
            IGP EQ++M I   P+    G       TH E+ PT MLSVVANLTP+SD+NQSPRNMYQ
Sbjct: 508  IGPQEQLYMNIAIYPEEVKKG-----ITTHVELSPTAMLSVVANLTPFSDYNQSPRNMYQ 562

Query: 660  CQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAY 719
            CQMAKQTMG  + +  +RAD KL+ +Q PQ PIVRT   +KY +++YP G NA++AV++ 
Sbjct: 563  CQMAKQTMGTPMHSYAYRADNKLFKIQNPQKPIVRTINQSKYHVNDYPHGCNAVIAVISN 622

Query: 720  TGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQ-KLFRRNKDAKSLHSV 778
            TGYDMEDAMI+NKSS +RG  HG +Y+T   DL +   +   G+  + R +     L   
Sbjct: 623  TGYDMEDAMIINKSSYERGFGHGSVYKTVFYDLDEGKLRAQTGRTSVSRPDYQTDGLDQY 682

Query: 779  IDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVA-VDMKNSKNLPQ- 836
            +D DGLP+VG+ +   EP  +  ++          K  E  +++ V  +    S N P+ 
Sbjct: 683  LDVDGLPHVGRYVTGHEPLYTFVNELDGKQVVEMIKSKEEAWIEEVKIIGNLTSMNAPRT 742

Query: 837  --KANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPS 894
              K  +++R  RNP+IGDKF+SRHGQKGV SQLWP+I+MPFS  +G++PD+IINP+AFPS
Sbjct: 743  VTKFTVKYRFDRNPVIGDKFASRHGQKGVLSQLWPEINMPFSE-SGLKPDVIINPNAFPS 801

Query: 895  RMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGF 954
            RMTI ML+E +AAK G+++G F   T F+            DE  + V   GE L   G+
Sbjct: 802  RMTIGMLIEIMAAKAGAVNGIFQQGTAFS-----------FDEKNTAVKFFGEQLAKAGY 850

Query: 955  NYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKR 1014
            NY+G E +YSG  G E   +IF G  YYQRLRHMV DK+QVR+TG ++ +TRQP+KGRK 
Sbjct: 851  NYYGNEPMYSGTTGEEFHADIFFGVCYYQRLRHMVKDKYQVRATGKVNALTRQPVKGRKI 910

Query: 1015 GGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIRE 1074
            GGGIRFGEMERDS+LAHG ++ L+DRL   SD H+  VC  CGS LT             
Sbjct: 911  GGGIRFGEMERDSMLAHGTSFCLNDRLMKSSDLHIMMVCRHCGSTLT------------- 957

Query: 1075 IGGLPPARAPKK--VTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
            +   P  +   +   TC  C+    +  VA+PYVF YL  ELAA+NI + LQ+
Sbjct: 958  VATKPSGQTDSRNHTTCIDCKVDDAVP-VAVPYVFNYLITELAAVNIALKLQI 1009


>gi|405955197|gb|EKC22403.1| DNA-directed RNA polymerase I subunit RPA2 [Crassostrea gigas]
          Length = 1142

 Score =  827 bits (2137), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/1176 (40%), Positives = 669/1176 (56%), Gaps = 108/1176 (9%)

Query: 2    ARKKSADFEPLRELVRHHIESFDYMLDEGLS---------------------EMFD---- 36
             R K    +PL++L + HI+SF+ ++  GLS                     +M D    
Sbjct: 19   GRLKPHQHQPLQDLTKPHIDSFNALIHGGLSRAVQTIPPVDFALPNGDRIAFKMLDATIS 78

Query: 37   -------------------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVM 77
                                CR+   SY G L   + ++        V  +      P+M
Sbjct: 79   YPTVDLGNKYAQTLKVYPAECRERGSSYLGSLSISMLWKVNGRIQGTVERKI--ADVPIM 136

Query: 78   LKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRD 137
            +K+  C+L G   ++LV   EEA EMGGYFI NG E+V R +++ ++N+P  + R S+++
Sbjct: 137  VKSSVCNLNGLTPKELVRRGEEAEEMGGYFISNGNEKVIRMLVMSRRNFPTCINRPSWKN 196

Query: 138  RREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTN 197
            R + YT+  V +R V  D   V   L+YL NGS  L F  Q + + +PV  +LKAL +  
Sbjct: 197  RGKQYTEYGVSLRSVGDDNIGVNNVLHYLSNGSASLCFSHQKEMFFVPVVFILKALHNVT 256

Query: 198  DLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQP 257
            D  I++ L         KE  +     V   ++  L+E    +LTT+   L ++GE F+ 
Sbjct: 257  DKFIYDQLI------QGKEDNSFYKGCVIAMLRHALSE----NLTTQKTVLAYMGEIFRV 306

Query: 258  VIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQ 317
             +      +   V E +I+  I VHL++N DKF+LL++M +KLF+       S++ D+  
Sbjct: 307  KLSLPPWYTDQDVGEYLIKYCICVHLDNNIDKFHLLVYMTRKLFAFAKGECASESADNPM 366

Query: 318  NQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQ 377
             QE+LL G L  + LKEKL DW+   K  I D    N K+ ++  L  +        +  
Sbjct: 367  FQELLLGGQLYGMILKEKLHDWMISVKSSI-DRTAKNYKEQEYV-LTEVTMNDALRHTTN 424

Query: 378  IGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS 437
            I  S+E  + +G + +++GL L Q  G TV A++LNF R+IS FR VHRG+ F+ +RTT+
Sbjct: 425  ITKSMEYFMASGSIHSRSGLGLMQVTGLTVVADKLNFFRYISHFRCVHRGSFFSEMRTTA 484

Query: 438  VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLI 497
            VRKLLPE+WGFLCPVHTPDG PCGLLNH+T+     + + S  ++            +L 
Sbjct: 485  VRKLLPEAWGFLCPVHTPDGSPCGLLNHLTALAGAVTSHLSNKHLAS----------LLF 534

Query: 498  GVGMIP-SLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDL 556
             +G  P   P +         +V LDGR++G +     + V   LR +KV   S +P   
Sbjct: 535  SMGTTPCDAPAMAPMS--KCFTVFLDGRILGYLHEDIAQSVEKRLRFMKVKGLSKVPPMS 592

Query: 557  EVGYVPLS-LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-- 613
            E+  VP +     YPGLY+FTS  + +RPV N++   +E      IG FEQV+M+I C  
Sbjct: 593  EICLVPKTKFASQYPGLYIFTSTARMIRPVWNLTTDCKE-----WIGTFEQVYMDI-CIT 646

Query: 614  PDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQA 673
            P+    G       TH+E+    MLS VA  TP+SD NQSPRNMYQCQM KQTMGF V A
Sbjct: 647  PEEAIQGV-----TTHQELSEVSMLSTVAQFTPFSDFNQSPRNMYQCQMGKQTMGFPVHA 701

Query: 674  LKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKS 733
            L  RAD KLY LQTPQ+P+VR   Y  Y +D YP GTNAIVAV++YTGYDMEDAMILNKS
Sbjct: 702  LDRRADNKLYKLQTPQSPVVRPVMYDHYEMDTYPLGTNAIVAVMSYTGYDMEDAMILNKS 761

Query: 734  SVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKD-AKSLHSVIDSDGLPYVGQMIH 792
            S +RG  H  IY+++ IDL+ D +   R  ++F    D +  L   +  +GLP++G  + 
Sbjct: 762  SFERGFAHASIYKSQIIDLNSDHH--GRILQIFGCLPDNSHFLGDRLTKEGLPHIGTYLQ 819

Query: 793  PGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAV--DMKNSKNLPQKANIRFRHTRNPII 850
             G+P+ S  +  T   R  S    E  +V  +    D    + L  +  I  R  RNPII
Sbjct: 820  RGDPFYSTINIQTGKSREYSYTSDEPAYVHQIKALGDTTGIQEL-SRVCIVLRVKRNPII 878

Query: 851  GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGG 910
            GDKFSSRHGQKGVCS +WP  +MPF+  +GM PD++ NPH +PSRMTI M++ES+A K  
Sbjct: 879  GDKFSSRHGQKGVCSMMWPVENMPFTE-SGMTPDILFNPHGYPSRMTIGMMIESMAGKSA 937

Query: 911  SLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTE 970
            SLHG   DATPF  S           E +  +D  G++L   G+NY+G E ++SGV G E
Sbjct: 938  SLHGVCHDATPFQFS-----------EEEPAIDHFGKLLVKAGYNYYGTERMFSGVNGQE 986

Query: 971  LTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLA 1030
            L  +IFIG VYYQRLRHMVSDKFQVR+TG +D +T QP+KGRKRGGG+RFGEMERD+L+A
Sbjct: 987  LEADIFIGVVYYQRLRHMVSDKFQVRTTGPVDPLTHQPVKGRKRGGGVRFGEMERDALIA 1046

Query: 1031 HGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCH 1090
            HG +YLL DRL  CSD   A VC+ CGS+L+     P    +R       +   ++ TC 
Sbjct: 1047 HGTSYLLKDRLLDCSDVSKARVCTSCGSILS-----PYLEKLRMGSVTDASERNRRWTCK 1101

Query: 1091 ACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLG 1126
            AC+    ++T+ +P+VFRYL AEL+AMNIK+ L + 
Sbjct: 1102 ACKQKDSVQTITLPFVFRYLVAELSAMNIKVKLDVA 1137


>gi|115398832|ref|XP_001215005.1| DNA-directed RNA polymerase I polypeptide 2 [Aspergillus terreus
            NIH2624]
 gi|114191888|gb|EAU33588.1| DNA-directed RNA polymerase I polypeptide 2 [Aspergillus terreus
            NIH2624]
          Length = 1205

 Score =  820 bits (2118), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 475/1165 (40%), Positives = 663/1165 (56%), Gaps = 161/1165 (13%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPV--VRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
            CR+   +Y GKL A +E+Q ++ G  V  VRE    GQ P+ML+T RCHL+ A  ++LV 
Sbjct: 128  CRERHATYRGKLRARLEYQ-VNNGDWVESVRE---LGQVPIMLRTNRCHLEKATPEELVQ 183

Query: 96   LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
             KEE+ E+GGYFI+NG E++ R +++ K+N+PM+++R SF  R   YT   + IR VR D
Sbjct: 184  HKEESEELGGYFIVNGNEKLIRMLVVGKRNFPMAIIRGSFVKRGHTYTKYGIQIRSVRPD 243

Query: 156  QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
            Q+S T  L+YL +G+V   F  +  EYL+PV ++LKALV+TND EIF  L      +   
Sbjct: 244  QTSQTNVLHYLSDGNVTFRFSWRKNEYLIPVMMILKALVETNDREIFEGLVGNASSE--- 300

Query: 216  EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
                + +  V++RV+++L   +  ++ TR  C  ++GE F+PV+      S        +
Sbjct: 301  ---GINNTFVTDRVELLLRTYKGYNVHTRSSCRAYLGEKFKPVLGVPSDMSNEDAGTEFL 357

Query: 276  RDYIFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
            R  +  HL + N       DKF +++FM++KL++LV      DNPD++ NQEILL G L 
Sbjct: 358  RKVVLPHLGNQNVTETQDYDKFKMIMFMIRKLYALVAGDCAPDNPDAVSNQEILLGGFLY 417

Query: 329  TIYLKEKLEDWLRKGKKLIQD-EIENNGKKFD--FFNLANIKKVMEKNPSKQIGTSIETM 385
             + LKE+LE+W+R    +++D    NNG KF    F    + K+++++ ++ +G+++E  
Sbjct: 418  GMILKERLEEWVRSFGPILRDWSNRNNGAKFTDPAFERDFLSKIVKRS-NENLGSALEYF 476

Query: 386  LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
            L TG L + TGLDLQQ +GYTV AE++NF RFIS FR +HRG+ FA L+TT+VRKLLPES
Sbjct: 477  LSTGNLVSPTGLDLQQASGYTVMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPES 536

Query: 446  WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
            WGFLCPVHTPDG PCGLLNH+   C +++         D        L V +GV    S+
Sbjct: 537  WGFLCPVHTPDGAPCGLLNHLAHKCLIST--------SDIDVSHLPKLLVQLGVRSESSV 588

Query: 506  PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
              L +S P     V +DGR+VG     +   V   LR  KV     +P +LE+GYVP S 
Sbjct: 589  -SLDESVP-----VQIDGRIVGYCSPKQARVVADTLRYWKVMEMHNVPKELEIGYVPNSN 642

Query: 566  GGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNA 624
            GG YPG+Y+F+   +  RPV+ + L       ++ +GPFEQ F+EI C P+       + 
Sbjct: 643  GGQYPGIYIFSQAARMFRPVKYLLL-----DKLDYVGPFEQPFLEIACLPE-------DL 690

Query: 625  FP--ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKL 682
             P  +TH E  PT +LS+VAN+TP+SD+NQSPRNMYQCQM+KQTMG    A+ +R D KL
Sbjct: 691  IPGVSTHIEFTPTNILSIVANMTPFSDYNQSPRNMYQCQMSKQTMGTPGTAIDYRTDNKL 750

Query: 683  YHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG 742
            Y LQT QTPIVR   Y  YG+D +P GTNA+VA+++YTGYDM+DAMI+NKSS +RG  HG
Sbjct: 751  YRLQTGQTPIVRPPLYNAYGLDNFPNGTNAVVAIISYTGYDMDDAMIINKSSHERGFGHG 810

Query: 743  QIYQTETIDLSDDGNKVDRGQ----KLFRRNKDAK---SLHSVIDSDGLPYVGQMIHPGE 795
             IY+T+   L D  ++  R +    KLF      +      + +D DGLP++G  +  G 
Sbjct: 811  TIYKTKIHSLDDKDSRRGRSRREITKLFGFAPGGEIKAEWRNSLDEDGLPHIGARVREGS 870

Query: 796  PYCSI----YDKTTNSWRTN-------SRKGSESVFVDYVAVDMKNSKNLP-QKANIRFR 843
               +     YD  T+S+            K +E  ++D + V    +   P Q  ++++R
Sbjct: 871  LVAAWHTVRYDAATDSYVNVDGITHFIKYKDAEEGYIDSIRVMGAETGVEPCQSISVKYR 930

Query: 844  HTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLE 903
              R P+IGDKFSSRHGQKG                                 MTIA ++E
Sbjct: 931  VPRKPVIGDKFSSRHGQKG---------------------------------MTIAQMIE 957

Query: 904  SVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLY 963
            S+A K G+LHG   D+TPF  S           E  +  D  GE LR  G+NY+G E LY
Sbjct: 958  SMAGKAGALHGHPQDSTPFQFS-----------EENTATDYFGEQLRKAGYNYYGNEPLY 1006

Query: 964  SGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEM 1023
            SG+ G E   +IFIG V+YQRLRHMV+DKFQVR+TG ++ +T QP+KGR +GGGIR GEM
Sbjct: 1007 SGITGKEFAADIFIGVVHYQRLRHMVNDKFQVRTTGPVNSLTGQPVKGRAKGGGIRVGEM 1066

Query: 1024 ERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGG------ 1077
            ERDSL+AHGAA++L DRL  CSD   A +C  CGS L+         A+  +G       
Sbjct: 1067 ERDSLIAHGAAFILQDRLMNCSDTQRAWICRDCGSFLSTQV------AVSSVGSSKARNA 1120

Query: 1078 ------------LPPARAPKKVTCHACQTSK----------------------GMETVAM 1103
                             +   V C  C                           +  VA+
Sbjct: 1121 AAVAAKASAPAQTQAGGSSGIVRCRRCAREAVFDDSRAVIWEDGDGRRYVGGDNVTVVAV 1180

Query: 1104 PYVFRYLAAELAAMNIKITLQLGDG 1128
            P V RYL  ELAAM I++  ++G+ 
Sbjct: 1181 PGVLRYLDVELAAMGIRMKFRVGNA 1205


>gi|302411196|ref|XP_003003431.1| DNA-directed RNA polymerase I subunit RPA2 [Verticillium albo-atrum
            VaMs.102]
 gi|261357336|gb|EEY19764.1| DNA-directed RNA polymerase I subunit RPA2 [Verticillium albo-atrum
            VaMs.102]
          Length = 1208

 Score =  817 bits (2111), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 471/1149 (40%), Positives = 656/1149 (57%), Gaps = 143/1149 (12%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR+  ++Y GKL A  EF+  D  +       + GQ P+M+K+ RCHL+G     LV  K
Sbjct: 118  CRERHVTYRGKLSATFEFRINDGDAKEFTR--DLGQMPIMVKSNRCHLEGNSPDLLVKRK 175

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EE+ E+GGYFI+NG+E++ R + + ++N+PM     +   R  GY+   +          
Sbjct: 176  EESEELGGYFIVNGIEKIIRLLQVNRRNFPMPSTDPASPTRGAGYSPHGI---------- 225

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
                      +   +LG     K +   V ++LKALV+TND EIF  L      K     
Sbjct: 226  ----------HSFAQLG---PTKPFSTNVMMILKALVETNDREIFEGLIGSKGSK----- 267

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
             +  +  +++RV+++L       L T+ +   ++GE F+ V+    + S+Y V    ++ 
Sbjct: 268  -SAQNTFLTDRVELLLRTYTSYGLYTKTETRAYLGEKFRVVLGVPDTMSHYDVGTEFLKR 326

Query: 278  YIFVHLND-------NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITI 330
             + VHL +       ++DKF +L+FM++KL++LV      DNPD++QNQE+LL G L  +
Sbjct: 327  IVLVHLGNVDVTEQQDSDKFKMLLFMIRKLYALVAGECSVDNPDAIQNQEVLLGGFLYGM 386

Query: 331  YLKEKLEDWLRKGKKLIQDEIENNGKKF--DFFNLANIKK----VMEKNPSKQIGTSIET 384
             LKE+L+++L      ++  + +  +KF    F   + +K     + +  ++ +G+ +E 
Sbjct: 387  ILKERLDEFLSTA---VRASLRDYHRKFPAKTFTSQDFQKDFPATIFRLANESLGSGLEY 443

Query: 385  MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPE 444
             + TG L + +GLDLQQ AGYTV AE+LNFLRFIS FR +HRGA FA L+TT+VRKLLPE
Sbjct: 444  FMSTGNLTSPSGLDLQQTAGYTVVAEKLNFLRFISHFRMIHRGAFFAELKTTTVRKLLPE 503

Query: 445  SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIG-VGMIP 503
            SWGFLCPVHTPDG PCGLLNH+   CR+ +             + TS L  L+  +G + 
Sbjct: 504  SWGFLCPVHTPDGSPCGLLNHLAHKCRIMT-----------DPVDTSTLPALVAEMGAVS 552

Query: 504  SLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL 563
            +      +     + V+LDGRV+G     E  ++   LR  KV     +P +LE+GYVP 
Sbjct: 553  T----SSAATDESVVVMLDGRVLGFSTPQESIRIADTLRYWKVEGTHGVPLELEIGYVPP 608

Query: 564  SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRN 623
            S GG+YPGLY+ +   + VRPV+ + L     Q  + +GP EQ +M I   +        
Sbjct: 609  SNGGSYPGLYIASKAARMVRPVKYLPL-----QKQDYVGPHEQPYMSIAVVEK----EII 659

Query: 624  AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
            +  +TH E  PT MLS++AN+TP+SD NQSPRNMYQCQM KQTMG    AL  R D KLY
Sbjct: 660  SGESTHVEFDPTNMLSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPATALAHRTDNKLY 719

Query: 684  HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
             +QT QTP+VR+  + +YG D +P G N++VAV++YTGYDM+DAMILNKSS +RG  HG 
Sbjct: 720  RIQTGQTPVVRSPLHNEYGFDNFPNGMNSVVAVISYTGYDMDDAMILNKSSHERGFGHGT 779

Query: 744  IYQTETIDLSDDGNKVDRGQ--KLFRRNKDA---KSLHSVIDSDGLPYVGQMIHPGEPYC 798
            IY+ + + L DD       Q  KLF    ++       S++D DGLPYVG+M+  G+  C
Sbjct: 780  IYKVKKVSLKDDSRSRTAKQVTKLFGFAPNSFVKGEYRSMLDEDGLPYVGRMVQEGDILC 839

Query: 799  SIYDKTT--NSWRTN--------SRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRN 847
            + +  T   N   TN          K SE  F++ V +    + N P Q  +I+ R  R 
Sbjct: 840  AYHTVTADFNGNLTNLDGQTQYEKYKESEQAFIEEVRIIGSENGNEPAQTVSIKLRVPRA 899

Query: 848  PIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAA 907
            P+IGDKFSSRHGQKGV SQ WP  DMPF+  +GM+PD IINPHAFPSRMTI M +ES+A 
Sbjct: 900  PVIGDKFSSRHGQKGVASQKWPATDMPFT-ESGMQPDTIINPHAFPSRMTIGMFVESLAG 958

Query: 908  KGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVY 967
            K G+LHG   D+TPF             +E  +  D  G  L   G+NYHG E +YSG+ 
Sbjct: 959  KAGALHGLAQDSTPFK-----------FNEENTAADYFGHQLMKAGYNYHGNEPMYSGIT 1007

Query: 968  GTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDS 1027
            G EL+ +I+IG VYYQRLRHMV+DK+QVR+TG +   T QPIKGRK+GGGIR GEMERD+
Sbjct: 1008 GEELSADIYIGVVYYQRLRHMVNDKYQVRTTGPVVPTTGQPIKGRKKGGGIRVGEMERDA 1067

Query: 1028 LLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKK- 1086
            LLAHG A+LL DRL  CSDY  + +C  CGS L+   + P          + P    KK 
Sbjct: 1068 LLAHGTAFLLQDRLLNCSDYTKSWICRSCGSFLS---VQPT---------VSPFVGKKKQ 1115

Query: 1087 ---VTCHAC-------------------------QTSKGMET--VAMPYVFRYLAAELAA 1116
               V C +C                         Q   G  T  V +P   +YL  ELAA
Sbjct: 1116 ISTVRCRSCAKRLDETDLEGDSIEGEIWEDGQGNQWVGGDNTTVVVVPGALKYLDVELAA 1175

Query: 1117 MNIKITLQL 1125
            M +K+  ++
Sbjct: 1176 MGVKLKYRV 1184


>gi|324502024|gb|ADY40894.1| DNA-directed RNA polymerase I subunit RPA2 [Ascaris suum]
          Length = 1163

 Score =  815 bits (2105), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/1176 (38%), Positives = 673/1176 (57%), Gaps = 123/1176 (10%)

Query: 14   ELVRHHIESFDYMLDEGL--------SEMF------------------------------ 35
            E+  +H+ SFDY+ DEG+        +E F                              
Sbjct: 39   EIASYHVGSFDYLADEGVHLAAVDVPTEKFRLPNGEAVEMKYTGAQLGYPALETSSGLTS 98

Query: 36   ---------DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQ 86
                       CRQ  ++Y   L A +E +     +         G+ PVML + RCHL+
Sbjct: 99   SIDAMKIYPSECRQRGMTYRAPLKASIEIRINGVRAECCEA--ILGEVPVMLMSSRCHLK 156

Query: 87   GADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKA 146
            G    +LV+  EEA E GGYFI+ G E+V R ++  ++N+P+++VR SFRD+ + +T   
Sbjct: 157  GLSRSQLVARGEEATEKGGYFIVKGSEKVIRLLVANRRNFPIALVRRSFRDKGKLFTQYG 216

Query: 147  VVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLT 206
            V++RC++++ S+  + ++YL  G++ +    + + + +P+  +LKALV  ND  I +HL 
Sbjct: 217  VMMRCIKENHSAAMITMHYLETGAITVAVQYRRELFYIPLMYILKALVPMNDACIRDHLV 276

Query: 207  CCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQS-- 264
                      +        +  V  +LA  Q+  +T +   L  +G  F+  ++      
Sbjct: 277  ----------RARPNDHFWANCVTSMLALCQEDGITNQEAALTVLGSRFRVALEDRVGPW 326

Query: 265  ESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLP 324
            ES   V   ++R  + +HL+DN +KF +L++M QKL +LV      + PD+ Q QE  L 
Sbjct: 327  ESSSDVGRFLLRACVAIHLSDNEEKFFILVYMAQKLIALVKGECAPETPDNPQFQETALS 386

Query: 325  GHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLAN--IKKVMEKNPSKQIGTSI 382
            GH++ + ++E++E+ L   ++ I+ E +   +K D FNL +  + +    + S +I   +
Sbjct: 387  GHILLLIIRERMENILGVVRRKIEFEAK---RKADTFNLTSREVLRAFGSHRSGEISRGL 443

Query: 383  ETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLL 442
            E  L TG L T+TGL LQQ  G++V AER+N LRF+S FRA+HRGA F  +RTT VRKL 
Sbjct: 444  EYFLATGNLLTRTGLALQQNNGFSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLR 503

Query: 443  PESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLI----G 498
            PE+WGF+CPVHTPDG PCGLLNH+T++ R+ ++Y S        +M   +  + +     
Sbjct: 504  PEAWGFICPVHTPDGAPCGLLNHVTASVRIVTHYSS------LKQMPALLAELGVLSHSA 557

Query: 499  VGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV-IPDDLE 557
            V ++P+           +  VLLDGR VG +P S+   V   LR +KV      +P   E
Sbjct: 558  VALMPT---------DEMYPVLLDGRFVGYVPRSKAAYVEKQLRAVKVDRNDRRVPYVSE 608

Query: 558  VGYV-----PLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIR 612
            +  V     P+++   YPGL + T P + +RPV+N++     +   E IG FEQV++ I 
Sbjct: 609  IALVRHSSDPVNIQTQYPGLCIMTDPARMIRPVKNLA-----ANATEFIGTFEQVYLSI- 662

Query: 613  C--PDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFS 670
            C  PD  + G        H+E+HP+ + S   NL P+ DHNQSPRN+YQCQM KQTMG  
Sbjct: 663  CIEPDEAEPG-----VTMHQELHPSCLFSFAGNLIPFPDHNQSPRNVYQCQMGKQTMGTP 717

Query: 671  VQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMIL 730
            V A   RAD K+Y LQ PQ+P+++   Y KY +DEYP GTNA VAV++YTGYDMEDAM++
Sbjct: 718  VHAWSHRADNKMYRLQFPQSPLLKPEAYDKYEMDEYPLGTNACVAVISYTGYDMEDAMVI 777

Query: 731  NKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQM 790
            NKSS  RG  HG + + E ++L  +G  ++    +F  +   K+    I  DGLP  G++
Sbjct: 778  NKSSFQRGFAHGTVIKVERVNL-QEGRSIN--SDVFMNDPTKKT--PSIGEDGLPIPGRL 832

Query: 791  IHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQ-KANIRFRHTRNPI 849
               G+PY ++    T  ++T+  K +E  +   V +  +      +  A I++R  RNPI
Sbjct: 833  YMEGDPYYTVLSLDTGVYKTHHFKYAEPAYCGIVRIVEEGGMTRGKCHALIQWRIQRNPI 892

Query: 850  IGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKG 909
            IGDKF+SRHGQKG+ S LWP   MPFS  +GM PD+I NPH FPSRMTI M++ES+A K 
Sbjct: 893  IGDKFASRHGQKGINSFLWPAESMPFSE-SGMMPDIIFNPHGFPSRMTIGMMIESMAGKA 951

Query: 910  GSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGT 969
             ++HG + DA+PF             +E K+ +D  G +L   G+NY+G E +YSGV G 
Sbjct: 952  AAMHGAYYDASPFV-----------FNEKKTAIDHFGRLLTLAGYNYYGNETMYSGVDGR 1000

Query: 970  ELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLL 1029
            E+  +IF G VYYQRLRHM++DKFQVRSTG +D +T QP+KGRK+GGGIRFGEMERD+++
Sbjct: 1001 EMEVQIFFGIVYYQRLRHMIADKFQVRSTGPIDPVTHQPVKGRKKGGGIRFGEMERDAMI 1060

Query: 1030 AHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTC 1089
            AHGA++ L DRL   SD  +A VC+ CGS+L+       K    ++  L    + ++  C
Sbjct: 1061 AHGASFSLQDRLFNSSDKDLAHVCARCGSLLSVLRCANVKSHKDDLNVLVTDHSERE-RC 1119

Query: 1090 HACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
              C     +  + +P VFRYL AELAAMN+++ L +
Sbjct: 1120 LTCGKDDQIYIIEVPRVFRYLTAELAAMNVRVQLSV 1155


>gi|402593918|gb|EJW87845.1| DNA-directed RNA polymerase [Wuchereria bancrofti]
          Length = 1121

 Score =  813 bits (2099), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/1102 (41%), Positives = 650/1102 (58%), Gaps = 76/1102 (6%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CRQ  ++Y G L   VE +    G  +       G+ P+MLK+ RCHL+    ++LV+  
Sbjct: 74   CRQRGLTYRGPLKVSVEIRL--NGVKMDFCEVIIGEVPIMLKSNRCHLRWLTREQLVAHG 131

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EE  E GGYFI  G E+V R ++  ++NYP+ ++R SFR++   +T   ++IRCVR + S
Sbjct: 132  EEGTEKGGYFICKGTEKVIRLLVANRRNYPIGIIRRSFREKGPLFTQYGMMIRCVRGNYS 191

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            +V + L+YL +G++ +    + + + LP   V+K+L   ND  I  H+  C         
Sbjct: 192  AVMMTLHYLESGTIVIALQYRRELFYLPFMYVIKSLTSMNDHCIMEHMIRCRP------- 244

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETV--- 274
               G       V  +LA   D  +  +   L  IG  F+  +        + V+E V   
Sbjct: 245  ---GDHFWKGCVTAMLALCNDDGVVNQKTALTAIGGRFR--VATQDRVGPWEVSEDVGRF 299

Query: 275  -IRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLK 333
             +R  + +HL+++ DKF LL +M QKL +L      +++PD+ Q QE ++ GH++ + ++
Sbjct: 300  LLRVCVAIHLDNDEDKFFLLSYMAQKLIALAKGECAAESPDNPQFQEAVVSGHILLLIIR 359

Query: 334  EKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLAT 393
            E+LE+ L   ++ I+ E +   + F   +   + + +    S +I   +E  + TG L T
Sbjct: 360  ERLENILSIARRKIELEAKRKAENF-LLSSHELIRAIGTQRSGEITRGLEYFIATGNLIT 418

Query: 394  QTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVH 453
            + GL LQQ  G++V AER+N LRF+S FRA+HRGA F  +RTT VRKL PE+WGF+CPVH
Sbjct: 419  KGGLTLQQNNGFSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICPVH 478

Query: 454  TPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGP 513
            TPDG PCGLLNH+T++ R+ ++Y    N  +  K+   +   ++G   +  LP       
Sbjct: 479  TPDGAPCGLLNHVTASVRIVTHYS---NTNELPKLLGEL--GMVGHSAVTLLPA------ 527

Query: 514  PAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYV-----PLSLGGA 568
             ++  VL+DG+ VG I  S+   +   LR LKVS  + +P   E+  V     P+++   
Sbjct: 528  ESMYPVLVDGKFVGHISQSQASHIERQLRFLKVSDDARVPSCAEIILVQKSTDPINILVQ 587

Query: 569  YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPAT 628
            YPGLY+FT P + +RPVR   LPS     IE IG FEQV++ I C D  +          
Sbjct: 588  YPGLYIFTEPARLIRPVR--YLPS---NRIEFIGMFEQVYLSI-CIDPEEA---EPNVTM 638

Query: 629  HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTP 688
            H+EIHP+ + S  ANL P+ DHNQSPRN+YQCQM KQTMG  V A  +RAD K+Y LQ P
Sbjct: 639  HQEIHPSCLFSFAANLIPFPDHNQSPRNVYQCQMGKQTMGIPVHAWNYRADNKMYRLQFP 698

Query: 689  QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
            Q PIV+ + Y KYGIDEYP GTNA VAV++YTGYDMEDAM++NKSS +RG  HG I + E
Sbjct: 699  QDPIVKPDPYEKYGIDEYPLGTNACVAVISYTGYDMEDAMVINKSSYERGFAHGSIVKVE 758

Query: 749  TIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSW 808
             I+L++      R  +      D K+    ID DGLP  G++   G+PY S+Y+  TN++
Sbjct: 759  RINLTE-----GRPTESLVFLCDPKNPQKTIDLDGLPIPGRLYMEGDPYYSVYEIDTNNY 813

Query: 809  RTNSRKGSESVFVDYVAV-----DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGV 863
            + +  K +E+ F   V +      + NSK     A I++R  RNPIIGDKF+SRHGQKG+
Sbjct: 814  KVHKYKYAEAAFCGSVRIVEGGEHIGNSKG-KCHALIQWRTQRNPIIGDKFASRHGQKGI 872

Query: 864  CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFA 923
             S LWP   MPFS  +GM PD+I NPH         M++ES+A K G++HG   D++PF 
Sbjct: 873  NSFLWPTESMPFSE-SGMVPDIIFNPH--------GMMIESMAGKAGAMHGSTYDSSPFV 923

Query: 924  NSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQ 983
                        +E K+ +D  G++L   G+NY+G E +YSGV G E+  +IF G VYYQ
Sbjct: 924  -----------FNEKKTAIDHFGQLLVRAGYNYYGNETMYSGVDGREMEVQIFFGIVYYQ 972

Query: 984  RLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHT 1043
            RLRHM++DKFQVRSTG  D +T QP+KGRK+GGGIRFGEMERD+++AHGAA+ L DRL  
Sbjct: 973  RLRHMIADKFQVRSTGPTDPVTLQPVKGRKKGGGIRFGEMERDAMIAHGAAFTLQDRLFN 1032

Query: 1044 CSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAM 1103
            CSD  +A VC+ CGS+++ T    +  + R           ++  C  C     +  V +
Sbjct: 1033 CSDRDIAHVCARCGSMIS-TLRCSKMLSERRNSENSIVNHSEREMCLLCGKDDQVCPVEV 1091

Query: 1104 PYVFRYLAAELAAMNIKITLQL 1125
            P VFRYL AELAAMN+++ + +
Sbjct: 1092 PRVFRYLVAELAAMNVRLQISV 1113


>gi|170584696|ref|XP_001897130.1| DNA-directed RNA polymerase, beta subunit family protein [Brugia
            malayi]
 gi|158595460|gb|EDP34013.1| DNA-directed RNA polymerase, beta subunit family protein [Brugia
            malayi]
          Length = 1108

 Score =  812 bits (2098), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/1105 (41%), Positives = 645/1105 (58%), Gaps = 95/1105 (8%)

Query: 38   CRQAKISYTGKLMADVEFQY----LDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKL 93
            CRQ  ++Y G L   VE +     +D    +V      G+ P+MLK+ RCHL+    ++L
Sbjct: 74   CRQRGLTYRGPLKVSVEIRLNGVKMDFCEVIV------GEVPIMLKSNRCHLRWLTREQL 127

Query: 94   VSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVR 153
            V+  EE  E GGYFI  G E+V R ++  ++NYP+ +VR SFR++   +T   ++IRCVR
Sbjct: 128  VAHGEEGTEKGGYFICKGTEKVIRLLVANRRNYPIGIVRRSFREKGPLFTQYGMMIRCVR 187

Query: 154  KDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKY 213
             + S+V + L+YL +G++ +    + + + LP   V+K+L   ND  I  H+  C     
Sbjct: 188  GNYSAVMMTLHYLESGTIVIALQYRRELFYLPFMYVIKSLTSMNDQCIMEHMIRCRP--- 244

Query: 214  KKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQS--ESYYAVA 271
                   G       V  +LA   D  +  +   L  IG  F+          E    V 
Sbjct: 245  -------GDHFWKGCVTAMLALCNDDGVVNQKTALTAIGARFRVATQDRVGPWEISEDVG 297

Query: 272  ETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIY 331
              ++R  + +HL+++ DKF LL +M QKL +L      +++PD+ Q QE  + GH++ + 
Sbjct: 298  RFLLRVCVAIHLDNDEDKFFLLSYMAQKLIALAKGECAAESPDNPQFQEAAVSGHILLLI 357

Query: 332  LKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRL 391
            ++E+LE+ L   ++ I+ E +   + F   +   + + M    S +I   +E  + TG L
Sbjct: 358  IRERLENTLSIARRKIELEAKRKAESF-LLSSHELIRAMGTQRSGEITRGLEYFIATGNL 416

Query: 392  ATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCP 451
             T+ GL LQQ  G++V AER+N LRF+S FRA+HRGA F  +RTT VRKL PE+WGF+CP
Sbjct: 417  ITKGGLTLQQNNGFSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICP 476

Query: 452  VHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIG-VGMIPSLPKLVK 510
            VHTPDG PCGLLNH+T++ R+ ++Y +           TS L  L+G +GM+        
Sbjct: 477  VHTPDGAPCGLLNHVTASVRIVTHYSN-----------TSELPKLLGELGMM-------- 517

Query: 511  SGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYV-----PLSL 565
                    VL+DG+ VG I  SE   +   LR LKVS    +P   E+  V     P+++
Sbjct: 518  ------YPVLVDGKFVGYISQSEASHIERQLRFLKVSDDVRLPSCAEIILVQKSIDPINI 571

Query: 566  GGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAF 625
               YPGLY+FT P + +RPVR   LPS     IE IG FEQV++ I C D  +       
Sbjct: 572  LVQYPGLYIFTEPARLIRPVR--YLPS---NRIEFIGTFEQVYLSI-CIDPEEA---EPN 622

Query: 626  PATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHL 685
               H+EIHP+ + S  ANL P+ DHNQSPRN+YQCQM KQTMG  V A  +RAD K+Y L
Sbjct: 623  VTMHQEIHPSCLFSFAANLIPFPDHNQSPRNVYQCQMGKQTMGIPVHAWNYRADNKMYRL 682

Query: 686  QTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIY 745
            Q PQ PIV+ + Y KYGIDEYP GTNA VAV++YTGYDMEDAM++NKSS +RG  HG I 
Sbjct: 683  QFPQNPIVKPDPYEKYGIDEYPLGTNACVAVISYTGYDMEDAMVINKSSYERGFAHGSIV 742

Query: 746  QTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTT 805
            + E I+L++      R  +      D K+    I  DGLP  G++   G+PY S+Y+  T
Sbjct: 743  KVERINLTE-----GRPTESLVFLCDPKNPQKTIGLDGLPIPGRLYMEGDPYYSVYEIDT 797

Query: 806  NSWRTNSRKGSESVFVDYVAV-----DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQ 860
            N+++ +  K +E+ F   V +      + NSK     A I++R  RNPIIGDKF+SRHGQ
Sbjct: 798  NNYKVHKYKYAEAAFCGSVRIVEEGEHIGNSKG-KCHALIQWRTQRNPIIGDKFASRHGQ 856

Query: 861  KGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDAT 920
            KG+ S LWP   MPFS  +GM PD+I NPH         M++ES+A K G++HG   D++
Sbjct: 857  KGINSFLWPTESMPFSE-SGMVPDIIFNPH--------GMMIESMAGKAGAMHGSTYDSS 907

Query: 921  PFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPV 980
            PF             +E K+ +D  G++L   G+NY+G E +YSGV G EL  +IF G V
Sbjct: 908  PFV-----------FNEKKTAIDHFGQLLVRAGYNYYGNETMYSGVDGRELEVQIFFGIV 956

Query: 981  YYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDR 1040
            YYQRLRHM++DKFQVRSTG  D +T QP+KGRK+GGGIRFGEMERD+++AHGAA+ L DR
Sbjct: 957  YYQRLRHMIADKFQVRSTGPTDPVTLQPVKGRKKGGGIRFGEMERDAMIAHGAAFTLQDR 1016

Query: 1041 LHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMET 1100
            L  CSD  +A +C+ CGS+++ T    +  + R           ++  C  C     +  
Sbjct: 1017 LFNCSDRDIAHICARCGSMIS-TLRCSKMLSERRNSENSVVNHSEREMCLLCGKDDQVCP 1075

Query: 1101 VAMPYVFRYLAAELAAMNIKITLQL 1125
            V +P VFRYLAAELAAMN+++ + +
Sbjct: 1076 VEVPRVFRYLAAELAAMNVRLQISV 1100


>gi|340515986|gb|EGR46237.1| predicted protein [Trichoderma reesei QM6a]
          Length = 1206

 Score =  810 bits (2092), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 470/1144 (41%), Positives = 655/1144 (57%), Gaps = 132/1144 (11%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR+   +Y GKL A   F+Y   G   +      GQ P+M+K+ RCHL+G     LVS K
Sbjct: 118  CRERHATYRGKLSA--TFEYSINGGDAIEFTRELGQVPIMIKSNRCHLEGNSPALLVSRK 175

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EE+ E+GGYFI+NG E++ R + + K+N+PM++ R SF +R  GYT   +++R VR D++
Sbjct: 176  EESEELGGYFIVNGNEKIIRLLQVNKRNFPMAINRPSFTNRGAGYTTYGIILRSVRPDET 235

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            S T  L+YL +G+V   F  +  EYL+PV ++LKALV+TND EIF  L      K     
Sbjct: 236  SQTNVLHYLKDGNVTFRFSWRKNEYLIPVIMILKALVETNDREIFEGLIGPMGSK----- 290

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
             A  +  +++RV+++L   +   L ++ +   ++G+ F+ V+   ++ S Y V    +R 
Sbjct: 291  -AASNTFLTDRVELLLRTYKAYRLYSKSETRAYLGQKFRVVLGVPETMSDYEVGTEFLRR 349

Query: 278  YIFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITI 330
             + VHL + N       DKF+L++FM++KL++L       DNPD++QNQEILL G L   
Sbjct: 350  IVCVHLGNVNVTEKQDLDKFHLVLFMIRKLYALAAGECAVDNPDAIQNQEILLGGFLYAQ 409

Query: 331  YLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKV---MEKNPSKQIGTSIETMLK 387
             LKE+L+++L    +    +        +F +    K+    + +  ++ I   +E  L 
Sbjct: 410  ILKERLDEFLGTSVRAALRDYLRRHPAVNFTSEEFRKEFPGGIFRKSNENIANGLEYFLS 469

Query: 388  TGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWG 447
            TG L + +GLDLQQ AG+TV AE+LNFLRFIS FR VHRGA FA L+TT+VRKLLPESWG
Sbjct: 470  TGNLVSASGLDLQQTAGFTVVAEKLNFLRFISHFRMVHRGAFFAQLKTTAVRKLLPESWG 529

Query: 448  FLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPK 507
            F+CPVHTPDG PCGLLNH    C+V + Y       D S    SI  ++  +G +    +
Sbjct: 530  FMCPVHTPDGSPCGLLNHFAHKCKVMTDY------VDVS----SIPALVAELGAV----E 575

Query: 508  LVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGG 567
               +     + V+LDG+++G     E  ++   LR  KV  +  +P +LEVGYVP S GG
Sbjct: 576  TSSASTDESVVVMLDGKILGWCTPKESLRIGDCLRYWKVEGSHNVPLELEVGYVPPSHGG 635

Query: 568  AYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFP 626
            +YPGLYL ++P + VRPV+ + L  E+      +GP EQ +M I   P   + G      
Sbjct: 636  SYPGLYLTSTPSRMVRPVKYLPLQKED-----YVGPHEQPYMSIAVVPQEIESGV----- 685

Query: 627  ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQ 686
            +TH E  PT MLS++AN+TP+SD NQSPRNMYQCQM KQTMG    A++ R D K Y +Q
Sbjct: 686  STHVEFDPTNMLSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPGTAIRHRTDNKSYRIQ 745

Query: 687  TPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQ 746
            T QTPIVR   +  YG D +P G NA+VAV++YTGYDM+DAMI+NKS+ +RG  HG +Y+
Sbjct: 746  TGQTPIVRAPLHNTYGFDNFPNGMNAVVAVISYTGYDMDDAMIINKSAHERGFGHGTVYK 805

Query: 747  TETIDLSDD-----GNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIY 801
            T+ I L DD        V +       +  + S  +++D DGLP+VG+M+  G+  C+ Y
Sbjct: 806  TKKITLKDDSRTRAAKSVVKMFGFAPHSFVSASHQAMLDDDGLPHVGRMVQEGDVLCA-Y 864

Query: 802  DKTTNSWRTN-----------SRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPI 849
               T  +  N             K SE  F++ V +    S + P Q  +I+ R  R+P+
Sbjct: 865  HTVTPDYNGNLVNLDGITHYEKYKDSEIGFIEEVRLIGAESGSEPLQTISIKIRIPRSPV 924

Query: 850  IGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKG 909
            IGDKFSSRHGQKGV SQ WP +DMPFS  TG++PD                         
Sbjct: 925  IGDKFSSRHGQKGVLSQKWPAVDMPFS-ETGIQPD------------------------A 959

Query: 910  GSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGT 969
            G+LHG   D+TPF             DE  +  D  G  L   GFNYHG E +YSG+ G 
Sbjct: 960  GALHGLAQDSTPFR-----------FDEENTAADYFGHQLMKAGFNYHGNEPMYSGITGE 1008

Query: 970  ELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLL 1029
            EL  +I+IG VYYQRLRHMV+DK+QVR+TG +   T QPIKGRKRGGGIR GEMERD+LL
Sbjct: 1009 ELGADIYIGVVYYQRLRHMVNDKYQVRTTGPVVPTTGQPIKGRKRGGGIRVGEMERDALL 1068

Query: 1030 AHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTC 1089
            AHG A+LL DRL  CSDY  + +C  CGS L+   +  Q    ++       +AP  V C
Sbjct: 1069 AHGTAFLLQDRLLNCSDYTRSWICRRCGSFLSVQPVVSQFAPGKK-------KAPSMVRC 1121

Query: 1090 HACQT----SKGME------------------------TVAMPYVFRYLAAELAAMNIKI 1121
              C      S+G++                         V +P   ++L  ELAAM +K+
Sbjct: 1122 RNCAVKLDDSEGIDLTEIQGEIWEDGQGHCWVGGDETTQVVVPGALKFLDVELAAMGVKL 1181

Query: 1122 TLQL 1125
              ++
Sbjct: 1182 KYRI 1185


>gi|321453922|gb|EFX65117.1| hypothetical protein DAPPUDRAFT_333503 [Daphnia pulex]
          Length = 1153

 Score =  810 bits (2092), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/1101 (39%), Positives = 635/1101 (57%), Gaps = 85/1101 (7%)

Query: 38   CRQAKISYTGKLMADVEFQYLDA--GSPVVRERFN--FGQFPVMLKTRRCHLQGADSQKL 93
            CR    +Y GKL   V +       G  + +  F    G+ PVM+++  C+L G   ++L
Sbjct: 104  CRMRNSTYKGKLFVQVGWSISKTPEGPLIAQVPFERCLGEIPVMIQSELCNLSGLSPKEL 163

Query: 94   VSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVR 153
            VS  E   E GGYF++ G ER+ R +   ++NYPM++ R  ++ R + +TDK V IRCV+
Sbjct: 164  VSKGEHEQEWGGYFVVKGHERILRMISATRKNYPMTVQRDVWKRRGKLFTDKGVFIRCVK 223

Query: 154  KDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKY 213
            +D ++    L+YL NG++RL F  +   Y+ P+ +VLKAL++  D  I+  L        
Sbjct: 224  EDMTATNNVLHYLSNGTMRLMFNFKKILYVFPLMLVLKALINCTDSYIYEQLV------- 276

Query: 214  KKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA---V 270
               +G  G     +R+ ++L ++QD  L T       IG +F+     L    +Y    V
Sbjct: 277  ---QGLEGDIYYKDRIVLMLRQLQDEGLYTHEHVRNFIGRNFRAKFTDL--PKWYTDEQV 331

Query: 271  AETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITI 330
             + ++ + +  HL DN DKFNLL+FM +KLF+        +  D +  QEI LPGHL   
Sbjct: 332  CKFLLENSVLFHLKDNKDKFNLLVFMARKLFAFAYGKCALEGMDPVMMQEISLPGHLYLQ 391

Query: 331  YLKEKLEDWLRKGKKLI--QDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKT 388
             +K++L  WL   K +I  ++ +  N      F L + +  +  + S +I ++IE +  T
Sbjct: 392  LVKDRLASWLTVVKYVILKRERMTKN------FVLTSSEMGIALSKSGKIDSAIENVFAT 445

Query: 389  GRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGF 448
            G L     L + Q  G ++ AE +N +R++S FRAVHRGA F   R++ VR+L P++WGF
Sbjct: 446  GNLPGTADLGMNQNTGLSIMAENINHMRYMSHFRAVHRGAVFMDSRSSEVRQLKPDAWGF 505

Query: 449  LCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKL 508
            LCPVHTPDG PCGLLNH+++TC V +        +D S + T    +L+ +GM P    +
Sbjct: 506  LCPVHTPDGSPCGLLNHLSATCHVVN------TTQDTSGIPT----LLVALGMTPVEETI 555

Query: 509  VKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGA 568
              +       V+L+GRV+G +      + V  LR LKV  A  +P  LE+ +VP +L G 
Sbjct: 556  HNNNYSECYVVMLEGRVLGRVGDRSATRFVDKLRMLKVRGAENVPKTLEIAFVPRTLNGQ 615

Query: 569  YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPAT 628
            YPG+YLFT+  + +RPV NI+     +  +EL+G FEQV++ I   +  D      F  T
Sbjct: 616  YPGIYLFTASARMMRPVYNIA-----AGTVELVGTFEQVYLNICVTE--DENENGIF--T 666

Query: 629  HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTP 688
            H+E+  T  LS +A L P  D NQSPRNMYQCQM KQTMG  V   +F+ + KLY LQTP
Sbjct: 667  HQELSETSFLSNLACLIPLPDFNQSPRNMYQCQMGKQTMGTPVHNWRFQTNSKLYRLQTP 726

Query: 689  QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
             TP+ R   + +  +D++  GTNAIVAV++YTGYDMEDAM++N++S+ RG  HGQ+Y ++
Sbjct: 727  TTPLFRPAHWDRINMDDFAMGTNAIVAVISYTGYDMEDAMVINRASLQRGFAHGQVYTSK 786

Query: 749  TIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSW 808
             IDL + G    R    F+R+     L   +D DGLPY G ++   +PY    D  T  +
Sbjct: 787  VIDLKEIGKGNSR---YFKRDPANDDLKEFLDEDGLPYPGILLQERDPYYCYLDVETAKY 843

Query: 809  RTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLW 868
                 KG+E+++V  + +   +  +   K  I FR  RNP IGDKF+SR GQKG+CSQ W
Sbjct: 844  SVAKYKGTEAMYVANINIIGADWMSGMNKVTITFRIPRNPQIGDKFASRAGQKGICSQQW 903

Query: 869  PDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKK 928
               D+P++  +GM PD++ NPH FPSRMTIAM++E +A K  ++HG   DATPF  S K 
Sbjct: 904  LAEDLPWTE-SGMIPDIVFNPHGFPSRMTIAMMIECMAGKSAAVHGLVHDATPFRFSEKN 962

Query: 929  TNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHM 988
            T            ++  G++L   G++Y+G E LYSG+ G E+  +IF G V+YQRLRHM
Sbjct: 963  T-----------AIEYHGKLLEEAGYSYYGTEKLYSGIDGREMDADIFFGVVHYQRLRHM 1011

Query: 989  VSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYH 1048
            VSDKFQVRS G +D +T QPIKGRKRGGG+RFGEMERD L++HGA YLL+DRL  CSD+ 
Sbjct: 1012 VSDKFQVRSVGAIDHVTLQPIKGRKRGGGVRFGEMERDGLVSHGALYLLYDRLFHCSDHF 1071

Query: 1049 VADVCSLCGSVLT---------ATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGME 1099
              D+C +CGS L          + F H Q   ++               C  C     ME
Sbjct: 1072 QMDICRVCGSFLPPLSNLNSRRSGFYHSQNALMK---------------CSVCNDGGKME 1116

Query: 1100 TVAMPYVFRYLAAELAAMNIK 1120
             + +P V++YL AEL + +I+
Sbjct: 1117 EIMVPAVYKYLIAELGSTSIQ 1137


>gi|145489775|ref|XP_001430889.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124397990|emb|CAK63491.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1115

 Score =  810 bits (2091), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/1175 (39%), Positives = 679/1175 (57%), Gaps = 129/1175 (10%)

Query: 12   LRELVRHHIESFDYMLDEGLSEMFDH---------------------------------- 37
            LR   +HHIESF+Y+   GL E+  H                                  
Sbjct: 9    LRVAAKHHIESFNYLYTHGLVEICRHLSPIEVCVPGNRDIRLPFKNMKIWIEELQIGMPT 68

Query: 38   --------------CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRC 83
                          CRQ K SYT  ++A +  +  D  +P    R + G+ P+++K+++C
Sbjct: 69   QQGMLGDNRVLPTQCRQMKKSYTAPMLATICREIDD--NPKETVRLSLGEIPILVKSQKC 126

Query: 84   HLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYT 143
            HL G  +++LV  +E+  E GGYFI+NG E++ R +I+ K+NYP++  R  ++++   ++
Sbjct: 127  HLNGLSAEELVQQQEDCNEFGGYFIINGNEKIIRMLIIQKRNYPIAFKRPGYKNKGFNFS 186

Query: 144  DKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFN 203
              AV ++CVR DQ + T+ L+YL++G+V L   L+ KE  +PV I+L+AL D ND +I+ 
Sbjct: 187  PYAVQMKCVRSDQYARTITLHYLMDGNVYLRIILKKKELQMPVIILLRALTDMNDYQIYQ 246

Query: 204  HLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQ 263
             +           +       +S+RV++++A+ +   + T+   L++IG   +  ++   
Sbjct: 247  QIV----------RSQADKSDISDRVEVMIADAKSRGINTQKDALEYIGRLLRVELNIFN 296

Query: 264  SESY-YAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEIL 322
             E+    V    +R++I VHL+++ DK ++L+  ++KL++L       DN DSL NQE+L
Sbjct: 297  PETTDLQVGRIFLREHICVHLDNDQDKASILLLCIEKLYALFIDEINPDNLDSLVNQEVL 356

Query: 323  LPGHLITIYLKEKLEDWLRKGK-KLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTS 381
            L GHL T YL+EKLED L   + K+++D  +   K  D   LA  K+  +   +  +G  
Sbjct: 357  LSGHLYTAYLREKLEDLLVGVREKILKDATKEQSKLKD---LAYFKRCFDLQTT--VGEK 411

Query: 382  IETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKL 441
            +E  L TG L +QTGLDL + +G+T+ A++LN +RF+S FR+VHRG+ FA ++TT+VRKL
Sbjct: 412  LENFLATGNLRSQTGLDLMEASGFTIIADKLNNMRFLSHFRSVHRGSYFAQMKTTTVRKL 471

Query: 442  LPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGM 501
            LP+ WGF+CPVHTPDG PCGLLNH+T +C   ++ D +            I  +L  +G+
Sbjct: 472  LPDVWGFVCPVHTPDGGPCGLLNHITMSCVPLTHPDEQ-----------DIEELLFPLGV 520

Query: 502  IPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYV 561
                 +L+ S     L V+L+G+++G + SS +      +R  K  +   I +  EV  +
Sbjct: 521  QSQ--RLIYSKND--LPVVLNGKLIGYLNSSLLPTFEHTIRVYK--SNGTIKETTEVACL 574

Query: 562  PLSLGGA--YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDG 619
            P     +  +PG+Y+ T+  + +RPV N+ L       IE I P EQ+ M I C      
Sbjct: 575  PRQENKSPLFPGIYINTTVARLMRPVINLKL-----NTIEWISPLEQINMSIACTQADIR 629

Query: 620  GRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRAD 679
                     ++EI P  +LS++A+  P+ ++NQSPRNMYQCQMAKQTMG       +R D
Sbjct: 630  T-----DTQYQEIDPAYILSILASNVPFLNYNQSPRNMYQCQMAKQTMGSPCHNYPYRFD 684

Query: 680  QKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGM 739
             K+Y +  PQ P+VR   Y  Y   +Y +GTNAIVAV++YTGYDMEDAMIL KSS +RG 
Sbjct: 685  NKMYRILFPQKPVVRCFGYDDYQFADYASGTNAIVAVISYTGYDMEDAMILCKSSYERGF 744

Query: 740  CHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSD--------GLPYVGQMI 791
             HG IY++    L+DD     +  K    ++    L++ I S         GLP   Q++
Sbjct: 745  GHGIIYKSSEYSLNDD-----KEVKYKLLSQIPVQLYNQIKSQIPVNLLPYGLPEQSQVV 799

Query: 792  HPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIG 851
              G    ++YD      + +  K SE+  ++ VAV  K+  ++     I++R  RNPIIG
Sbjct: 800  TKGTAVLALYDSQLQQVKVHHSKDSETARIEQVAVVNKSENDV--SVMIKYRINRNPIIG 857

Query: 852  DKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGS 911
            DKFSSRHGQKGV S LWP IDMPFS  +GM PD+IINPHAFPSRMTI ML+ES+AAK   
Sbjct: 858  DKFSSRHGQKGVMSLLWPQIDMPFSE-SGMVPDIIINPHAFPSRMTIGMLIESMAAKANV 916

Query: 912  LHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTEL 971
            L G+  +  PF N            E+ ++VD  G+ L   G+NYHG E LYSG+YGT L
Sbjct: 917  LQGEMFETHPFQNY-----------ENDNVVDYFGKQLIKHGYNYHGNETLYSGIYGTPL 965

Query: 972  TCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAH 1031
              +I+ G VYYQRLRHMVSDK Q RS G +D +T+QPIKGRK+GGGIR GEMERD+L+AH
Sbjct: 966  KVDIYFGVVYYQRLRHMVSDKSQARSMGPVDVLTQQPIKGRKKGGGIRLGEMERDALIAH 1025

Query: 1032 GAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHA 1091
            G AY ++DRL  CSDY    +C  CG++L AT+   Q  ++  I  +  +  P  V C  
Sbjct: 1026 GVAYCINDRLLKCSDYSETYICDKCGNML-ATYQFVQLLSLENIQSVQSSH-PYCVRCKQ 1083

Query: 1092 CQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLG 1126
             + SK    VA+P+V RYL  ELAAMN+K+   + 
Sbjct: 1084 AKCSK----VAIPFVLRYLVNELAAMNVKLEFSVA 1114


>gi|145343599|ref|XP_001416405.1| DNA-directed RNA polymerase I polypeptide 2 [Ostreococcus lucimarinus
            CCE9901]
 gi|144576630|gb|ABO94698.1| DNA-directed RNA polymerase I polypeptide 2 [Ostreococcus lucimarinus
            CCE9901]
          Length = 1145

 Score =  809 bits (2089), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/1096 (41%), Positives = 648/1096 (59%), Gaps = 68/1096 (6%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR+   SY   L   V+F +   G  V R   N G  PVM+K+  C L      +LV+  
Sbjct: 107  CREGGESYKAPL--SVQFCWQIDGENVQRRVVNLGDCPVMVKSDVCSLALLSPAQLVARG 164

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EEA E GGYFI+NG+ER+ R +I  ++++ + + R +F  R   +++ A VIRCV +D+ 
Sbjct: 165  EEAHEAGGYFIINGIERMIRMIIQQRRHHILGLCRRAFTKRSPLFSEFATVIRCVTEDEH 224

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            S  ++L+Y+  G++RL    + +E+ +P GIVL+AL   +D E++  + C +        
Sbjct: 225  SSIVRLHYMRTGALRLALQHRRQEFFIPAGIVLRALAVCSDAEMYRQV-CLH-----LRS 278

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
                   + +R+ ++  E  +L + T++  L ++G+HF+ ++D    ES  +V E  + D
Sbjct: 279  AGTDETFIEDRLALLQRECHELQIRTQMCALSYLGQHFRTLLDLSSDESDISVGERFLED 338

Query: 278  YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
            +I+VHL  N DK +LLI ML KL S+V      D+PDSL NQE+L+PG L+   ++EK+ 
Sbjct: 339  FIYVHLQHNGDKLSLLILMLSKLLSIVTGRCSPDDPDSLVNQEVLVPGLLLQAMIREKVR 398

Query: 338  DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
                  +K++       G     ++   I  ++ ++ S  +G  +E  L TG L + TGL
Sbjct: 399  IAF---QKVVTHLRRTQGS----WSEETISHLINESGSSDVGKVVEYFLATGNLVSPTGL 451

Query: 398  DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDG 457
             L Q +G+T+ AE+LN+ R+IS FR+VHRGA F  LRTT+VRKLLPESWGFLCPVHTPDG
Sbjct: 452  GLSQTSGFTIVAEKLNYFRYISHFRSVHRGAYFMELRTTTVRKLLPESWGFLCPVHTPDG 511

Query: 458  EPCGLLNHMTSTCR-VASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAV 516
             PCGLLNH+   C  V    D     +   ++ + + R LI V               A 
Sbjct: 512  SPCGLLNHLAEMCEIVMPDTDHVFQQKRLLQIHSVLDRALISVEQYDC--------GYAH 563

Query: 517  LSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYV-PLSLGGAYPGLYLF 575
            + V+L+G  VG I +     V++ LR  KV+  + +    E+ Y+ P    G +PGLY+F
Sbjct: 564  VPVVLEGSFVGYISAENASHVISALRAFKVTLTTSVLRMSEISYIHPGGEHGLFPGLYIF 623

Query: 576  TSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPT 635
              P + +RPV+ +     ES  +E IG  EQ F+ I           NA   TH EI  T
Sbjct: 624  YGPSRLMRPVKQV-----ESMKVEFIGTLEQAFLSI---SAHQVESHNA-SYTHAEIRNT 674

Query: 636  GMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRT 695
              LS VA+LTP+SD NQSPRNMYQCQMAKQTMG  +  + +R+D KLY L TPQ P+  T
Sbjct: 675  SALSCVASLTPWSDFNQSPRNMYQCQMAKQTMGTPMHTICYRSDTKLYRLHTPQRPLALT 734

Query: 696  NTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD 755
             TY KY +D+Y  GTNA+VAV+AYTGYDMEDAMI+NK S+ RG  H  +Y+T    +S +
Sbjct: 735  CTYDKYSLDDYALGTNAVVAVIAYTGYDMEDAMIVNKGSLHRGFAHATLYKTLVEGISAN 794

Query: 756  GNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT-TNSWRTNSRK 814
                   + L RR+    S +  +D  G   +G ++ PG+   +++        R+   +
Sbjct: 795  -------ETLSRRDNTYTSENKQLDGTGSVQLGSIVRPGDTLLNLHSSDGVTKGRSIRLR 847

Query: 815  GSESVFVDYV----AVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPD 870
            G+++  VD V    +V    +KN  ++A I  R+ RNP+IGDKFSSRHGQKGV S LWP+
Sbjct: 848  GTDAAVVDKVVLTQSVKQAATKN-DKRAAITLRYDRNPVIGDKFSSRHGQKGVLSFLWPE 906

Query: 871  IDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTN 930
             DMPFS  TG+RPD+IINPHAFPSRMTI ML+ES+AAK G+  G F DATPF +S     
Sbjct: 907  EDMPFSDRTGLRPDVIINPHAFPSRMTIGMLVESLAAKAGASTGIFADATPFKHS----- 961

Query: 931  GDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVS 990
                 D+  S  +E G++LR  G+N+ G E L +G  G   + +IFIG VYYQRLRHMVS
Sbjct: 962  -----DKEISPTEEYGKLLRESGYNFCGSERLVNGCTGESFSVDIFIGLVYYQRLRHMVS 1016

Query: 991  --DKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYH 1048
                F VRSTG  + +T QPIKGRK GGGIRFGEMERDSLLAHG AYL+   LH CSD  
Sbjct: 1017 LFHTFHVRSTGPNNPLTMQPIKGRKSGGGIRFGEMERDSLLAHGVAYLV-SLLHICSDNR 1075

Query: 1049 VADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFR 1108
             A VC++CGS++         R            + ++ +C  C ++  +E +++P+VF 
Sbjct: 1076 DAWVCNMCGSLIAPLTCVASIRT--------DEYSSRRTSCRVCDSAHKLERISIPHVFI 1127

Query: 1109 YLAAELAAMNIKITLQ 1124
            YL AELAAMNI + ++
Sbjct: 1128 YLTAELAAMNISVQVK 1143


>gi|145542267|ref|XP_001456821.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124424634|emb|CAK89424.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1115

 Score =  805 bits (2080), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/1170 (39%), Positives = 675/1170 (57%), Gaps = 119/1170 (10%)

Query: 12   LRELVRHHIESFDYMLDEGLSEMFDH---------------------------------- 37
            LR   +HHIESF+Y+   GL E+  H                                  
Sbjct: 9    LRVAAKHHIESFNYLYTHGLIEICRHLSPIEVCVPGNRDIRLPFKNMKIWIEELQIGMPT 68

Query: 38   --------------CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRC 83
                          CRQ K SYT  ++A +  +  D  +P    R + G+ P+++K+++C
Sbjct: 69   QQGMLGDNRVLPTQCRQMKKSYTAPMLATICREIDD--NPKETVRLSLGEIPILVKSQKC 126

Query: 84   HLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYT 143
            HL G  +++LV  +E+  E GGYFI+NG E++ R +I+ K+NYP++  R  ++++   ++
Sbjct: 127  HLNGLSAEELVQQQEDCNEFGGYFIINGNEKIIRMLIIQKRNYPIAFKRPGYKNKGFNFS 186

Query: 144  DKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFN 203
              AV ++CVR DQ + T+ L+YL++G+V L   L+ KE  +PV I+L+AL D ND +I+ 
Sbjct: 187  PFAVQMKCVRSDQYARTITLHYLMDGNVYLRIILKKKELQMPVIILLRALTDMNDYQIYQ 246

Query: 204  HLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQ 263
             +           +       +S+RV++++A+ +   + T+   L++IG   +  ++   
Sbjct: 247  QIV----------RSQADKSDISDRVEVMIADAKSRGINTQKDALEYIGRLLRVELNIFN 296

Query: 264  SESY-YAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEIL 322
             E+    V    +R++I VHL ++ DK ++L+  ++KL++L       DN DSL NQE+L
Sbjct: 297  PETTDLQVGRIFLREHICVHLENDQDKASILLLCIEKLYALFIDEINPDNLDSLVNQEVL 356

Query: 323  LPGHLITIYLKEKLEDWLRKGK-KLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTS 381
            L GHL T YL+EKLED L   + K+++D  +   K  D   LA  K+  +   +  +G  
Sbjct: 357  LSGHLYTAYLREKLEDLLVGVREKILKDASKEQSKLKD---LAYFKRCFDLQTT--VGEK 411

Query: 382  IETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKL 441
            +E  L TG L +QTGLDL + +G+T+ A++LN +RF+S FR+VHRG+ FA ++TT+VRKL
Sbjct: 412  LENFLATGNLRSQTGLDLMEASGFTIIADKLNNMRFLSHFRSVHRGSYFAQMKTTTVRKL 471

Query: 442  LPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGM 501
            LP+ WGF+CPVHTPDG PCGLLNH+T +C   ++ D +            +  +L  +G+
Sbjct: 472  LPDVWGFVCPVHTPDGGPCGLLNHITMSCVPLTHPDEQ-----------DVEELLFPLGV 520

Query: 502  IPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYV 561
                 +L+ S     L V+L+G+++G + SS +      LR  K  +   I +  EV  +
Sbjct: 521  QSQ--RLIYSKND--LPVVLNGKLIGYLNSSLLPTFEHTLRVYK--SNGTIKETTEVACL 574

Query: 562  PLSLGGA--YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDG 619
            P     +  +PG+Y+ T+  + +RPV N+ L       IE I P EQ+ M I C      
Sbjct: 575  PRQENKSPLFPGIYINTTVARLMRPVINLKL-----NTIEWISPLEQINMSIACTQADIR 629

Query: 620  GRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRAD 679
                     ++EI P  +LS++A+  P+ ++NQSPRNMYQCQMAKQTMG       +R D
Sbjct: 630  T-----DTQYQEIDPAYILSILASNVPFLNYNQSPRNMYQCQMAKQTMGSPCHNYPYRFD 684

Query: 680  QKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGM 739
             K+Y +  PQ P+VR   Y  Y   +Y +GTNAIVAV++YTGYDMEDAMIL KSS +RG 
Sbjct: 685  NKMYRILFPQKPVVRCFGYDDYQFADYASGTNAIVAVISYTGYDMEDAMILCKSSYERGF 744

Query: 740  CHGQIYQTETIDLSDDGN---KVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEP 796
             HG IY++    L++D     K+     +   N+    +   +   GLP   Q++  G  
Sbjct: 745  GHGIIYKSSEYSLNEDKEVKYKLLSQIPIQLYNQIKAQVPVNLLPYGLPEQSQVVTKGSA 804

Query: 797  YCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSS 856
              ++YD      +    K SE+  ++ VAV  K+  ++     I++R  RNPIIGDKFSS
Sbjct: 805  VLALYDSQLQQVKVYHSKDSETARIEQVAVVNKSENDV--SVMIKYRINRNPIIGDKFSS 862

Query: 857  RHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKF 916
            RHGQKGV S LWP IDMPFS  +GM PD+IINPHAFPSRMTI ML+ES+AAK   L G+ 
Sbjct: 863  RHGQKGVMSLLWPQIDMPFSE-SGMVPDIIINPHAFPSRMTIGMLIESMAAKANVLQGEM 921

Query: 917  MDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIF 976
             +  PF N            E+ ++VD  G+ L   G+NYHG E LYSG+YGT L  +I+
Sbjct: 922  FETHPFQNY-----------ENDNVVDYFGKQLIKHGYNYHGNETLYSGIYGTPLKVDIY 970

Query: 977  IGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYL 1036
             G VYYQRLRHMVSDK Q RS G +D +T+QPIKGRK+GGGIR GEMERD+L+AHG AY 
Sbjct: 971  FGVVYYQRLRHMVSDKSQARSMGPVDVLTQQPIKGRKKGGGIRLGEMERDALIAHGVAYC 1030

Query: 1037 LHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSK 1096
            ++DRL  CSDY    +C  CG++L AT+   Q  ++  I  +  +  P  V C   + SK
Sbjct: 1031 INDRLLKCSDYSETYICDKCGNML-ATYQFVQLLSLENIQSVQSSH-PYCVRCKQAKCSK 1088

Query: 1097 GMETVAMPYVFRYLAAELAAMNIKITLQLG 1126
                VA+P+V RYL  ELAAMN+K+   + 
Sbjct: 1089 ----VAIPFVLRYLVNELAAMNVKLEFSVA 1114


>gi|341880642|gb|EGT36577.1| hypothetical protein CAEBREN_11996 [Caenorhabditis brenneri]
          Length = 1128

 Score =  805 bits (2078), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/1125 (38%), Positives = 656/1125 (58%), Gaps = 71/1125 (6%)

Query: 14   ELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQ 73
            +L +  ++S   +  + L  M   CRQ  ++Y G L   ++      GS +       G+
Sbjct: 49   QLFKPSLDSGAKLTVDTLPVMPAECRQRGLTYAGNLKVGIDVHV--NGSRLDMIETILGK 106

Query: 74   FPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRS 133
             P+ML++  CHL+G   ++LV+  EE  E GGYFI+NG E+V R +I  ++N+P++++R 
Sbjct: 107  VPIMLRSEGCHLRGMSREELVAAGEEPIEKGGYFIVNGSEKVIRLLIANRRNFPIAIIRK 166

Query: 134  SFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKAL 193
            +F+++   +++  V++R V+++ ++V + L+YL  G+++L    + + + +P+  V+KAL
Sbjct: 167  TFKEKGRLFSEFGVMMRSVKENHTAVMMTLHYLDTGTMQLALQFRREIFYVPLMYVVKAL 226

Query: 194  VDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGE 253
             D ND  I              ++G       S  +  +LA+ Q+  +  +   L+ IG 
Sbjct: 227  TDKNDAVIAAGF----------KRGRPQDQFFSSCILNMLAQCQEEGILNQQSALRAIGS 276

Query: 254  HFQPVIDGLQS--ESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSD 311
             F+  I    +  E        +IR+ + +HLN + +KF  L +M QKL +LV      +
Sbjct: 277  RFRVAISDRVAPWEDDLEAGRFIIRECVLIHLNSDEEKFFTLAYMAQKLIALVKGECAPE 336

Query: 312  NPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDF-FNLANIKKVM 370
             PD+ Q QE  + GH++ + L+E++E+ +     +++ ++E    K DF    A I K +
Sbjct: 337  TPDNPQFQEASVSGHILLLILRERMENII----GMVRRKLEFMSAKSDFILTSAAIIKAL 392

Query: 371  EKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASF 430
              +   +I   +   L TG L T+ GL LQQ +G++V AER+N LRF+S FRA+HRGA F
Sbjct: 393  GNHNGGEITRGMAYFLATGNLVTRVGLALQQESGFSVIAERINQLRFVSHFRAIHRGAFF 452

Query: 431  AGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRT 490
              +RTT VRKL PE+WGF+CPVHTPDG PCGLLNH+T++CR+ ++     N+        
Sbjct: 453  MEMRTTDVRKLRPEAWGFICPVHTPDGAPCGLLNHVTASCRIVTHLTDNSNVPA------ 506

Query: 491  SILRVLIGVGMIPSLPKLVKSGPPA--VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSA 548
                +L  +GM     K V   PP   +  VL+DGR +G +P ++   +  +LR  KV+ 
Sbjct: 507  ----MLSELGMYTQ--KTVTLAPPGEELYPVLMDGRFIGYVPIAKAASIERYLRCAKVAK 560

Query: 549  ASVIPDDLEVGYVPLS-----LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGP 603
             + IP   E+  V  S     +   YPG+Y+ + P + +RPVRN+++ +     +E IG 
Sbjct: 561  DARIPYTAEIALVRRSTDIKNIQTQYPGIYILSDPGRLIRPVRNLAMDT-----VEQIGT 615

Query: 604  FEQVFMEIRC-PDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQM 662
            FEQV++ +   P+  + G        H+E+HP+ + S   NL P+ DHNQSPRN+YQCQM
Sbjct: 616  FEQVYLSVVIDPEEAEPG-----VTMHQELHPSCLFSFAGNLIPFPDHNQSPRNVYQCQM 670

Query: 663  AKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGY 722
             KQTMG +V +   RAD K+Y LQ PQ P+++   Y KY +DEYP GTNA VAV++YTGY
Sbjct: 671  GKQTMGTAVHSWHSRADNKMYRLQFPQQPLLKLEAYEKYEMDEYPLGTNACVAVISYTGY 730

Query: 723  DMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSD 782
            DMEDAM +NK+S  RG  HG + + E I+L  +  K    + +F +N   +     + SD
Sbjct: 731  DMEDAMTINKASYQRGFAHGTVIKVERINLVTEREK----KTIFYKNPREEI--KTVGSD 784

Query: 783  GLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAV--DMKNSKNLPQKANI 840
            GLP  G+     E Y   Y+  T  ++T+    +E  +   V +    + S N  Q A I
Sbjct: 785  GLPIPGRRYFLDEVYYVTYNVETGDFKTHKFHYAEPAYCGLVRIVEQGEGSSNGSQHALI 844

Query: 841  RFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAM 900
            ++R  RNPIIGDKF+SRHGQKG+ S LWP   +PFS  TGM PD+I NPH FPSRMTI M
Sbjct: 845  QWRIERNPIIGDKFASRHGQKGINSFLWPVESLPFSE-TGMVPDIIFNPHGFPSRMTIGM 903

Query: 901  LLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVE 960
            ++ES+A K  + HG+  DA+PF             +E  + ++  G++L   G+NY+G E
Sbjct: 904  MIESMAGKAAATHGENYDASPFV-----------FNEDNTAINHFGQLLTKAGYNYYGNE 952

Query: 961  VLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRF 1020
              YSGV G ++  +IF G VYYQRLRHM++DKFQVR+TG +D IT QP+KGRK+GGGIRF
Sbjct: 953  TFYSGVDGRQMEMQIFFGIVYYQRLRHMIADKFQVRATGPIDPITHQPVKGRKKGGGIRF 1012

Query: 1021 GEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIR--EIGGL 1078
            GEMERD+++AHG +++L DRL  CSD  VA  C  CGS+L+    + Q   +R  +    
Sbjct: 1013 GEMERDAIIAHGTSFVLQDRLLNCSDRDVAYACRRCGSLLSVLMSNKQSHIVRKKKTNDN 1072

Query: 1079 PPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITL 1123
             P    +   C  C     +  + +P VFRYL AELAAMN+KI L
Sbjct: 1073 EPIDYTETQQCRTCGREDQVYLLQVPRVFRYLTAELAAMNVKIKL 1117


>gi|408394393|gb|EKJ73601.1| hypothetical protein FPSE_06219 [Fusarium pseudograminearum CS3096]
          Length = 1200

 Score =  805 bits (2078), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/1148 (40%), Positives = 656/1148 (57%), Gaps = 148/1148 (12%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR+  ++Y G+L A +E++ ++ G PV   R  FGQ PVM+K+ RCHL+G     LV  K
Sbjct: 118  CRERHVTYRGRLSATLEYR-INGGDPVEFTR-EFGQVPVMIKSNRCHLEGNSPALLVERK 175

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EE+ E+GGYF++NG+E++ R + L K+N+PM++ R SF++R  GYT   +++R VR D++
Sbjct: 176  EESEELGGYFVVNGIEKIIRLLQLNKRNFPMAINRPSFQNRGPGYTPYGIILRAVRPDET 235

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            S T  L+YL +G++   F  +  EYL+PV ++LKALV+TND EIF  L      K     
Sbjct: 236  SQTNVLHYLNDGNMTFRFSWRKNEYLVPVMMILKALVETNDREIFEGLVGPAGSK----- 290

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
             A G+  +++R++++L   +  +L ++      +GE F+ V+    + + Y V    +R 
Sbjct: 291  -AAGNTFLTDRIELLLRTYKSYNLYSKSDTRAFLGEKFRVVLGVPDTMANYEVGTEFLRK 349

Query: 278  YIFVHLND-------NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITI 330
             + VHL +       +N+K+ L++FM++KL++LV      DNPD++QNQEILL G L   
Sbjct: 350  IVLVHLGNVDVTEEQDNEKYKLILFMIRKLYALVAGECAVDNPDAVQNQEILLGGFLYGQ 409

Query: 331  YLKEKLEDWLRKG-KKLIQDEIENN-GKKF--DFFNLANIKKVMEKNPSKQIGTSIETML 386
             LKE+ +++L    +  ++D    N G  F  + F       +  K  ++ +G ++E  +
Sbjct: 410  ILKERFDEFLSVNVRGSMRDYFRRNPGIPFTSEEFRKEFPNNIFRK-ANENLGNALEYFM 468

Query: 387  KTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESW 446
             TG L +Q+GLDLQQ AG+TV AE+LNF RFIS FR VHRGA FA L+TT+VRKLLPESW
Sbjct: 469  STGNLQSQSGLDLQQTAGFTVVAEKLNFTRFISHFRMVHRGAFFAQLKTTAVRKLLPESW 528

Query: 447  GFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLP 506
            GF+CPVHTPDG PCGLLNH+   C + + Y       D S + T  L   +GV  + S  
Sbjct: 529  GFMCPVHTPDGSPCGLLNHLARKCSITTDY------LDVSHIAT--LAAELGVVDVSS-- 578

Query: 507  KLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLG 566
                +     + V++DG+++G     E  ++    R  KV     +P  LE+GYVP S G
Sbjct: 579  ----ASTDENVVVMMDGKILGYCTPKESVRIADCFRYWKVEGTHGVPLQLEIGYVPPSRG 634

Query: 567  GAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAF 625
            G+YPG+YL ++P + VRPV+ + L  E+      +GP+EQ +M I   P   + G+    
Sbjct: 635  GSYPGVYLTSTPARMVRPVKYLPLQKED-----WVGPYEQPYMSIAVVPQEIESGK---- 685

Query: 626  PATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHL 685
             +TH E  PT +LS++AN+TP+SD NQSPRNMYQCQM+KQTMG    A  +R D K Y +
Sbjct: 686  -STHVEFDPTNILSILANMTPFSDFNQSPRNMYQCQMSKQTMGTPGTASVYRTDNKSYQI 744

Query: 686  QTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIY 745
            QT QTPIVR   +  YG D +P G NA+VAV++YTGYDM+DAMILNKS+ +RG  HG IY
Sbjct: 745  QTGQTPIVRAPLHNTYGFDNFPNGFNAVVAVISYTGYDMDDAMILNKSAHERGFGHGTIY 804

Query: 746  QTETIDLSDDG-----NKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSI 800
            +T+ I L DD        V +       +  +     ++D DGLP+VG++I  G+  C+ 
Sbjct: 805  KTKKISLKDDSRTKATKSVTKAFGFAPHSHVSAHHQGMLDDDGLPHVGRLIQEGDVVCAW 864

Query: 801  YDKTT--NSWRTN--------SRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPI 849
            +  T   N    N          K SE  F++ V +    S N P Q  +I+FR  R+PI
Sbjct: 865  HTVTPDYNGKLVNLDGITHYEKYKDSEDGFIETVRLIGAESGNEPLQTVSIKFRIPRSPI 924

Query: 850  IGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKG 909
            +GDKFSSRHGQKGV SQ                                   +ES+A K 
Sbjct: 925  VGDKFSSRHGQKGVASQ---------------------------------KFVESLAGKA 951

Query: 910  GSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGT 969
            G+LHG   D+TPF             DE+ +  D  G  L   G+NYHG E +YSG+ G 
Sbjct: 952  GALHGLAQDSTPFK-----------FDETNTAGDYFGHQLMKAGYNYHGNEPMYSGITGE 1000

Query: 970  ELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLL 1029
            EL  +I+IG VYYQRLRHMV+DK+QVR+TG +   T QPIKGRKRGGGIR GEMERD+LL
Sbjct: 1001 ELQADIYIGVVYYQRLRHMVNDKYQVRTTGPVVPTTGQPIKGRKRGGGIRVGEMERDALL 1060

Query: 1030 AHGAAYLLHDRLHTCSDYHVADVCSLCGSVL----TATFIHPQKRAIREIGGLPPARAPK 1085
            AHG A+LL DRL  CSDY  + +C  CGS L    T +   P K+           +AP 
Sbjct: 1061 AHGTAFLLQDRLLNCSDYSKSWICRRCGSFLSVQPTVSQFAPGKK-----------KAPS 1109

Query: 1086 KVTCHACQTS--------------------------KGMET--VAMPYVFRYLAAELAAM 1117
             V C AC                              G +T  V +P   +YL  ELAAM
Sbjct: 1110 IVRCRACAIKLDDADAVDLTEVQGEIWEDGLGNSWVGGDQTTQVVVPGALKYLDVELAAM 1169

Query: 1118 NIKITLQL 1125
             +K+  ++
Sbjct: 1170 GVKLKYRV 1177


>gi|426223603|ref|XP_004005964.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 4 [Ovis
            aries]
          Length = 924

 Score =  805 bits (2078), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/986 (45%), Positives = 588/986 (59%), Gaps = 72/986 (7%)

Query: 149  IRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
            + CVR++ S+V + L+YL NG+V L F  + + + LP+G  LKALV  +D +IF  L   
Sbjct: 1    MHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI-- 58

Query: 209  YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYY 268
                  KE  +     VS+ ++I++ E      +T+ Q L ++GE F+  ++        
Sbjct: 59   ----KGKEDDSFFRNSVSQMLRIVMEE----GCSTQKQVLNYLGERFRVKLNLPDWYPNE 110

Query: 269  AVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
              AE +    I +HL  N +KF +L  M +KLF+L     + +NPDSL NQE+L PG L 
Sbjct: 111  QAAEFLFNQCICIHLKSNTEKFYVLCLMTRKLFALAKGECMEENPDSLMNQEVLTPGQLF 170

Query: 329  TIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKT 388
             ++LKEKLE WL   K  I  + +      +  NL  I  +        +    E +L T
Sbjct: 171  LMFLKEKLEAWLVSIKIAIDKKSQKTNVSLNSENLMKIFSL-----GIDLTKPFEYLLAT 225

Query: 389  GRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGF 448
            G L ++TGL   Q +G  V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGF
Sbjct: 226  GNLRSKTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGF 285

Query: 449  LCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKL 508
            LCPVHTPDGEPCGL+NH+T+ C V +           S    SI  +L  +G+ P     
Sbjct: 286  LCPVHTPDGEPCGLMNHLTAICEVVTQ----------SVYTASIPALLCSLGVTP----- 330

Query: 509  VKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS 564
            V   P    S    VLLDG ++G         +   LR  KV     IP  +EV  +P++
Sbjct: 331  VDGTPHRPYSECYPVLLDGVMIGWADKEIAPGIADSLRHFKVLREKRIPPWMEVVLIPMT 390

Query: 565  -LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRN 623
                 YPGLYLFT+P + VRPV+N+ L  EE     LIG  EQ+FM +   +        
Sbjct: 391  GKPSLYPGLYLFTTPCRLVRPVQNLELGKEE-----LIGTMEQIFMNVAIFED----EVL 441

Query: 624  AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
            A   TH+E+ P  MLSV+AN  P+SDHNQSPRNMYQCQM KQTMGF +   + R+D KLY
Sbjct: 442  AGVTTHQELFPHSMLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTFQDRSDNKLY 501

Query: 684  HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
             LQTPQ+P+VR   Y  Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG  HG 
Sbjct: 502  RLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGS 561

Query: 744  IYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDK 803
            +Y++E IDLS+   + D       +  D + +   +D DGLP++G  +  G+PY S  + 
Sbjct: 562  VYKSEFIDLSEKIKQGDDSLVFGVKAGDPRVMQK-LDDDGLPFIGAQLKYGDPYYSYLNL 620

Query: 804  TTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKG 862
             T        K  E+  VD + V   ++ N   K   I  R  RNP IGDKF+SRHGQKG
Sbjct: 621  NTGEGFVMYYKSKENCIVDNIKVCSNDTGNGKFKCVCITMRVPRNPTIGDKFASRHGQKG 680

Query: 863  VCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPF 922
            + S+LWP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+A K  +LHG   DATPF
Sbjct: 681  ILSRLWPVEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPF 739

Query: 923  ANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYY 982
              S           E  S ++  GEML+  G+NY+G E LYSG+ G EL  +IFIG VYY
Sbjct: 740  IFS-----------EENSALEYFGEMLKAAGYNYYGTERLYSGISGLELEADIFIGVVYY 788

Query: 983  QRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLH 1042
            QRLRHMVSDKFQVR+TG  D++T QPI GR   GGIRFGEMERD+LLAHG ++LLHDRL 
Sbjct: 789  QRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLF 848

Query: 1043 TCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP---KKVTCHACQTSKGME 1099
             CSD  VA VC  CGS+L+     P           PP+ +    +K +C  C  S  ++
Sbjct: 849  NCSDRSVAHVCVKCGSLLSPLLEKP-----------PPSWSALRNRKYSCALCNRSDTID 897

Query: 1100 TVAMPYVFRYLAAELAAMNIKITLQL 1125
            T+++PYVFRY  AELAAMNIK+ L +
Sbjct: 898  TISVPYVFRYFVAELAAMNIKVKLDI 923


>gi|1350832|sp|P28365.2|RPA2_EUPOC RecName: Full=DNA-directed RNA polymerase I subunit RPA2; Short=RNA
            polymerase I subunit 2
 gi|578407|emb|CAA47067.1| DNA-directed RNA polymerase [Euplotes octocarinatus]
          Length = 1166

 Score =  804 bits (2077), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/1195 (39%), Positives = 664/1195 (55%), Gaps = 126/1195 (10%)

Query: 13   RELVRHHIESFDYMLDEGLSEMFDH----------------------------------- 37
            + + RHHI+SFD+ +   L+   +H                                   
Sbjct: 17   KNIARHHIDSFDFAMSTCLNRACEHMLPFDYIVPEESASCGFKKLTLWYDSFELGQPSLG 76

Query: 38   -------------CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCH 84
                         CRQ K++YT  L A + F+  D    V   +   G  P M + + C+
Sbjct: 77   EIDYDSHILYPSECRQRKMTYTIPLFATI-FKKFD-DEMVDNFKVKLGDIPTMGRKKFCN 134

Query: 85   LQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTD 144
            L+G   ++L    E+  E GGYFI+NG E+V R +I+PK+N+P++  RS F +R + +TD
Sbjct: 135  LKGLTKKELAKRGEDMLEFGGYFIVNGNEKVIRMLIVPKRNFPIAFKRSKFLERGKDFTD 194

Query: 145  KAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNH 204
              V +RCVR D ++ T+ L YL +GSV L    Q +E+L+P+ ++LKAL +  D +I+  
Sbjct: 195  YGVQMRCVRDDFTAQTITLTYLSDGSVSLRLIYQKQEFLIPIILILKALKNCTDRQIYER 254

Query: 205  LTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQS 264
            +           KG      +S+RV+ ILA  +DL++    Q    IG  F+ V+ G+ S
Sbjct: 255  IV----------KGNFNQRQISDRVEAILAVGKDLNIYDSDQSKALIGSRFRIVLAGITS 304

Query: 265  E-SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILL 323
            E S     +  +  +I +H +    KF+ LI M+ KL++ V +    DN DS+  Q++LL
Sbjct: 305  ETSDIDAGDLFLSKHICIHTDSYEAKFDTLILMIDKLYASVANEVELDNLDSVAMQDVLL 364

Query: 324  PGHLITIYLKEKLEDWLRKG-KKLIQDEIENNGKKFDFFNLANIKKVMEKNPS-KQIGTS 381
             GHL    L EKL D L    +  +  E++ +   FD     ++    + N     IG  
Sbjct: 365  GGHLYLQILSEKLFDCLHINLRARLNKELKRHN--FDPMKFRDVLTNQKINCGIGLIGKR 422

Query: 382  IETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKL 441
            +E  L TG L ++T LDL Q +G+ +  ++LN +RF+S FR++HRG  FA  +TTSVRKL
Sbjct: 423  MENFLATGNLISRTNLDLMQTSGFCIIGDKLNNIRFLSHFRSIHRGQYFAEQKTTSVRKL 482

Query: 442  LPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGM 501
            LPESWGF+CPVHTPDG PCGLLNH++ +C      + + +I  F         +L  +GM
Sbjct: 483  LPESWGFICPVHTPDGAPCGLLNHISMSCVPIGSEEKQIDIDKFRN-------ILGELGM 535

Query: 502  IPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAAS---VIPDDLEV 558
                  L  +       V+ DG  +G +     E  V  LR LK + +     IP  LE+
Sbjct: 536  NSISSDLCLNYHTGYYPVIFDGIHLGYVEKDIGESFVEGLRYLKCTQSQPDYAIPRTLEI 595

Query: 559  GYVPLS---LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPD 615
             ++P S       +PG++L ++P +F RPV+N+         IE I P EQ+ + I C D
Sbjct: 596  AFIPFSGYSRNLQWPGIFLASTPARFTRPVKNLHYNC-----IEWISPLEQMNLSIACTD 650

Query: 616  GGDGGRRNAFP-ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQAL 674
                   +  P  TH+E+ P  +LS+VA++  ++++NQSPRNMYQCQMAKQTMG      
Sbjct: 651  ------EDITPETTHQELDPINILSIVASVGVFAEYNQSPRNMYQCQMAKQTMGTPYHNH 704

Query: 675  KFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSS 734
            +FR D K+Y L  P  PIV+T T   + I+EYP+GTNA+VAV++YTGYD+EDAMI+NKSS
Sbjct: 705  QFRTDNKIYRLLFPHRPIVKTRTQVDFDIEEYPSGTNAVVAVISYTGYDLEDAMIINKSS 764

Query: 735  VDRGMCHGQIYQTETIDLSDDGNKVDRGQK-----LFRRNKDAKSLHSV----IDSDGLP 785
             +RG  HG +Y++ T DL++  ++  RG K      F  N   K    +    ID DGLP
Sbjct: 765  YERGFGHGVVYKSYTHDLNESNSQSTRGIKSSVRYKFLNNVSQKDKSKIKLENIDPDGLP 824

Query: 786  YVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAV---DMKNSKNLPQKANIRF 842
             +G  +  G+P   I+D      + +  K SE   ++ V V   D KN  NL     IR+
Sbjct: 825  KIGSQLTKGKPELCIFDTLKRGAKLSKFKDSEKARIETVRVCGNDDKNPDNLSIGYTIRY 884

Query: 843  RHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLL 902
              +R P+IGDKFSSRHGQKGV S LWP +DMPF+   G+ PDLIINPHAFPSRMT+ ML+
Sbjct: 885  --SRIPVIGDKFSSRHGQKGVLSVLWPQVDMPFTE-NGITPDLIINPHAFPSRMTMGMLI 941

Query: 903  ESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVL 962
            +S+AAK GSL G+F     F              +   +V   G+ L   GFNYHG E++
Sbjct: 942  QSMAAKSGSLRGEFKTVETFQRY-----------DDNDIVGHFGKELLDKGFNYHGNELM 990

Query: 963  YSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGE 1022
            YSG++GT L  +IFIG VYYQRLRHMVSDK Q R TG +D +T QP+KGRK+GGGIRFGE
Sbjct: 991  YSGIFGTPLKADIFIGVVYYQRLRHMVSDKSQARGTGPIDILTHQPVKGRKKGGGIRFGE 1050

Query: 1023 MERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVL----------TATFIHPQKRAI 1072
            MERDSLLAHGAAY L+DRL   SDY    VC  CGS+L          T TFI P     
Sbjct: 1051 MERDSLLAHGAAYCLNDRLFRSSDYSEGFVCQNCGSILSCYVNRAIMKTQTFIPPSLDES 1110

Query: 1073 REIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
             +          +KV C  C+ +   + VA+P+V R+LA ELA+M IK+   + D
Sbjct: 1111 NKDTEDKEIHMNEKVICKVCKKNSNCKKVALPFVLRFLANELASMGIKLKFTVND 1165


>gi|46122499|ref|XP_385803.1| hypothetical protein FG05627.1 [Gibberella zeae PH-1]
          Length = 1201

 Score =  803 bits (2075), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/1148 (40%), Positives = 654/1148 (56%), Gaps = 147/1148 (12%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR+  ++Y G+L A +E++ ++ G PV   R  FGQ PVM+K+ RCHL+G     LV  K
Sbjct: 118  CRERHVTYRGRLSATLEYR-INGGDPVEFTR-EFGQVPVMIKSNRCHLEGNSPALLVERK 175

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EE+ E+GGYF++NG+E++ R + L K+N+PM++ R SF++R  GYT   +++R VR D++
Sbjct: 176  EESEELGGYFVVNGIEKIIRMLQLNKRNFPMAINRPSFQNRGPGYTPYGIILRAVRPDET 235

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            S T  L+YL +G++   F  +  EYL+PV ++LKALV+TND EIF  L      K     
Sbjct: 236  SQTNVLHYLNDGNMTFRFSWRKNEYLVPVMMILKALVETNDREIFEGLVGPAGSK----- 290

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
             A G+  +++R++++L   +  +L ++      +GE F+ V+    + + Y V    +R 
Sbjct: 291  -AAGNTFLTDRIELLLRTYKSYNLYSKSDTRAFLGEKFRVVLGVPDTMTNYEVGTEFLRK 349

Query: 278  YIFVHLND-------NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITI 330
             + VHL +       +N+K+ L++FM++KL++LV      DNPD++QNQEILL G L   
Sbjct: 350  IVLVHLGNVDVTEEQDNEKYKLILFMIRKLYALVAGECAVDNPDAVQNQEILLGGFLYGQ 409

Query: 331  YLKEKLEDWLRKG-KKLIQDEIENN-GKKF--DFFNLANIKKVMEKNPSKQIGTSIETML 386
             LKE+ +++L    +  ++D    N G  F  + F       +  K  ++ +G ++E  +
Sbjct: 410  ILKERFDEFLSVNVRGSMRDYFRRNPGIPFTSEEFRKEFPNNIFRK-ANENLGNALEYFM 468

Query: 387  KTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESW 446
             TG L +Q+GLDLQQ AG+TV AE+LNF RFIS FR VHRGA FA L+TT+VRKLLPESW
Sbjct: 469  STGNLQSQSGLDLQQTAGFTVVAEKLNFTRFISHFRMVHRGAFFAQLKTTAVRKLLPESW 528

Query: 447  GFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLP 506
            GF+CPVHTPDG PCGLLNH+   C + + Y       D S + T  L   +GV  + S  
Sbjct: 529  GFMCPVHTPDGSPCGLLNHLARKCSITTDY------LDVSHIAT--LAAELGVVDVSS-- 578

Query: 507  KLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLG 566
                +     + V++DG+++G     E  ++    R  KV     +P  LE+GYVP S G
Sbjct: 579  ----ASTDENVVVMMDGKILGYCTPKESVRIADCFRYWKVEGTHGVPLQLEIGYVPPSRG 634

Query: 567  GAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAF 625
            G+YPG+YL ++P + VRPV+ + L  E+      +GP+EQ +M I   P   + G+    
Sbjct: 635  GSYPGVYLTSTPARMVRPVKYLPLQKED-----WVGPYEQPYMSIAVVPQEIESGK---- 685

Query: 626  PATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHL 685
             +TH E  PT +LS++AN+TP+SD NQSP     CQMAKQTMG    A  +R D K Y +
Sbjct: 686  -STHVEFDPTNILSILANMTPFSDFNQSP-----CQMAKQTMGTPGTASVYRTDNKSYQI 739

Query: 686  QTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIY 745
            QT QTPIVR   +  YG D +P G NA+VAV++YTGYDM+DAMILNKS+ +RG  HG IY
Sbjct: 740  QTGQTPIVRAPLHNTYGFDNFPNGFNAVVAVISYTGYDMDDAMILNKSAHERGFGHGTIY 799

Query: 746  QTETIDLSDDG-----NKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSI 800
            +T+ I L DD        V +       +  +     ++D DGLP+VG++I  G+  C+ 
Sbjct: 800  KTKKISLKDDSRTKATKSVTKAFGFAPHSHVSAHHQGMLDDDGLPHVGRLIQEGDVICAW 859

Query: 801  YDKTT--NSWRTN--------SRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPI 849
            +  T   N    N          K SE  F++ V +    S N P Q  +I+FR  R+PI
Sbjct: 860  HTVTPDYNGKLVNLDGITHYEKYKDSEEGFIETVRLIGAESGNEPLQTVSIKFRIPRSPI 919

Query: 850  IGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKG 909
            +GDKFSSRHGQKGV SQ WP +D+PFS                             A K 
Sbjct: 920  VGDKFSSRHGQKGVASQKWPTMDLPFS---------------------------ETAGKA 952

Query: 910  GSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGT 969
            G+LHG   D+TPF             DE  +  D  G  L   G+NYHG E +YSG+ G 
Sbjct: 953  GALHGLAQDSTPFK-----------FDEENTAGDYFGHQLMKAGYNYHGNEPMYSGITGE 1001

Query: 970  ELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLL 1029
            EL  +I+IG VYYQRLRHMV+DK+QVR+TG +   T QPIKGRKRGGGIR GEMERD+LL
Sbjct: 1002 ELQADIYIGVVYYQRLRHMVNDKYQVRTTGPVVPTTGQPIKGRKRGGGIRVGEMERDALL 1061

Query: 1030 AHGAAYLLHDRLHTCSDYHVADVCSLCGSVL----TATFIHPQKRAIREIGGLPPARAPK 1085
            AHG A+LL DRL  CSDY  + +C  CGS L    T +   P K+           +AP 
Sbjct: 1062 AHGTAFLLQDRLLNCSDYSKSWICRRCGSFLSVQPTVSQFAPGKK-----------KAPS 1110

Query: 1086 KVTCHACQTS--------------------------KGMET--VAMPYVFRYLAAELAAM 1117
             V C AC                              G +T  V +P   +YL  ELAAM
Sbjct: 1111 IVRCRACAIKLDDADAVDLTEVQGEIWEDGLGSSWVGGDQTTQVVVPGALKYLDVELAAM 1170

Query: 1118 NIKITLQL 1125
             +K+  ++
Sbjct: 1171 GVKLKYRV 1178


>gi|170032393|ref|XP_001844066.1| DNA-directed RNA polymerase I 135 kDa polypeptide [Culex
            quinquefasciatus]
 gi|167872352|gb|EDS35735.1| DNA-directed RNA polymerase I 135 kDa polypeptide [Culex
            quinquefasciatus]
          Length = 1129

 Score =  802 bits (2072), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/1167 (37%), Positives = 651/1167 (55%), Gaps = 132/1167 (11%)

Query: 19   HIESFDYMLDEGLSEMF------------------------------------------- 35
            HIESFDY+L EGL+++                                            
Sbjct: 32   HIESFDYVLREGLADVIRQLDPVEFELPNKDRVRLRIGDCSIARPVVPLSQLNVREKRVF 91

Query: 36   -DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLV 94
               CRQ   +Y G     V+++      P +    + G  PVML++R C+L G    +LV
Sbjct: 92   PSECRQKNETYAGMCTITVDWEVNGQPRPAITR--DIGALPVMLRSRACNLGGMSPAELV 149

Query: 95   SLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRK 154
               E   E GG+F++ G+E++ R +I+ ++NYP+ + R+S+RDR + ++   ++IRCVR 
Sbjct: 150  ERGEHEDEWGGHFVVRGMEKLIRMLIMTRRNYPIVLSRNSWRDRGKEFSSTGIMIRCVRT 209

Query: 155  DQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDE-KY 213
            DQ+S    L+YL+NG+ +L F ++     +P+ ++LKAL D  D EI+  L   Y+E +Y
Sbjct: 210  DQTSTNNVLHYLVNGTAKLMFSIRRSLTFIPIMMLLKALSDYTDNEIYKRLIVGYEEDQY 269

Query: 214  KKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAET 273
             K             ++ +L E+ +  +  +++C  ++G+ F+  +  L   ++Y  A+ 
Sbjct: 270  YKHC-----------IQNMLRELHEEGIHNQVECKDYMGKVFRTKLYYL--PAWYTDAQR 316

Query: 274  ---VIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITI 330
               +++  + +HL+D+ DKFNLL+FM+QKLF+        ++ DS   QE+LL GHL   
Sbjct: 317  TDHLLKTCVLIHLDDDLDKFNLLVFMMQKLFTAAQGRCKLESVDSTMMQELLLGGHLYQK 376

Query: 331  YLKEKLEDWLRKGKKLIQDEIENNGKKFDFF--------NLANIKKVMEKNPSKQIGTSI 382
             L+E    +L             NG K++          +L   + VM    +     + 
Sbjct: 377  LLREHFLTFL-------------NGMKYNMLKLCSDADAHLGQNEAVMACKNASNFDRAF 423

Query: 383  ETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLL 442
                 TG L   + + L Q +G  + AE +N +R++S FRA+HRG+ F  +RTT  R+LL
Sbjct: 424  SNFFATGNLQKASEMGLMQDSGLVIIAENINRMRYMSHFRAIHRGSFFVTMRTTEARQLL 483

Query: 443  PESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMI 502
            P++WGF+CPVHTPDG PCGLLNH+T+ CRV++  D  G +++  K        LI  GM 
Sbjct: 484  PDAWGFICPVHTPDGTPCGLLNHLTTNCRVSNSPDP-GKVKNIEK-------YLIQYGMT 535

Query: 503  PSLP-KLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYV 561
            P+    L   G     +V+++GR+ G IP + + + V  LR LK+     IP+  E+ ++
Sbjct: 536  PANSVALSGGGVGEGYTVMVEGRIAGRIPKAVVGQAVQQLRMLKIGGEE-IPEATEIVFI 594

Query: 562  PLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGR 621
            P   GG YPGLY+F    + +RPV N+     ++  +ELIG FEQV+M+I C        
Sbjct: 595  PSKEGGQYPGLYIFVGAARMMRPVINL-----DANKVELIGTFEQVYMDI-CITA----- 643

Query: 622  RNAFP--ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRAD 679
            R A+P   TH+E+  T  LS +A L P  D NQSPRNMYQCQM KQTMG      + +  
Sbjct: 644  REAYPKVTTHKELSKTSFLSNLAMLIPMPDCNQSPRNMYQCQMGKQTMGTPCHNWQLQCI 703

Query: 680  QKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGM 739
             K Y LQTP TP+ R   +    +D Y  GTNAIVAV++YTGYDMEDAMI+NKS+ +RG 
Sbjct: 704  AKFYRLQTPATPLFRPVHHDNIDLDNYAMGTNAIVAVISYTGYDMEDAMIINKSAFERGF 763

Query: 740  CHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCS 799
             HG +Y+ E I+L        +G   F R+   + L   +D+DGLPY   ++    P   
Sbjct: 764  AHGTVYKNELIEL--------KGDSFFARDPRDERLKQFLDNDGLPYRSALLQHRNPMYC 815

Query: 800  IYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHG 859
             +D   +++        E   VD + +    S + P+KA I +R  RNP +GDKF+SR G
Sbjct: 816  YFDTNDHTYHVVKFDHHEDGIVDNIKLCGTTSASAPKKAVITYRIVRNPNVGDKFASRAG 875

Query: 860  QKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDA 919
            QKG+CSQ WP +D+PF+  +GM PD+I NPH FPSRMTIAM++E++A K G+ HG   DA
Sbjct: 876  QKGICSQKWPAVDLPFTE-SGMIPDIIFNPHGFPSRMTIAMMIETMAGKTGACHGLVHDA 934

Query: 920  TPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGP 979
            TPF  +           E  + +D  G +L + G+NY G E +YSGV G E+  +IF G 
Sbjct: 935  TPFRYT-----------EENTAIDYFGRLLESSGYNYFGTERMYSGVDGREMKADIFFGV 983

Query: 980  VYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHD 1039
            V+YQRLRHMVSDK+QVRSTG +DQ+T QP KGR RGGG+RFGEMERD+L+AHGA++LL D
Sbjct: 984  VHYQRLRHMVSDKWQVRSTGPLDQLTHQPNKGRSRGGGVRFGEMERDALIAHGASFLLQD 1043

Query: 1040 RLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGME 1099
            RL   SD     VC  CG     T I P     +++            TC  C++ +G+ 
Sbjct: 1044 RLFHGSDKITTLVCRSCG-----TLIGPISSITKKVATNATETERTPATCRLCRSDQGIG 1098

Query: 1100 TVAMPYVFRYLAAELAAMNIKITLQLG 1126
             V +PY+F++L ++L AMNI + L L 
Sbjct: 1099 HVEIPYIFKFLVSQLTAMNINVKLDLA 1125


>gi|338713977|ref|XP_003362990.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 [Equus
            caballus]
          Length = 924

 Score =  802 bits (2072), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/987 (44%), Positives = 591/987 (59%), Gaps = 74/987 (7%)

Query: 149  IRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
            + CVR++ S+V + L+YL NG+V L F  + + + LP+G  LKALV  +D +IF  L   
Sbjct: 1    MHCVREEHSAVNMNLHYLENGTVMLNFVYRKELFFLPLGFALKALVSFSDYQIFQELI-- 58

Query: 209  YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYY 268
                  KE  +     VS+ ++I+  E      +T+ Q L ++GE F+  ++        
Sbjct: 59   ----KGKEDDSFFRNSVSQMLRIVTEE----GCSTQKQVLNYLGERFRVKLNLPDWYPDA 110

Query: 269  AVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
              AE +    I +HL  N +KF +L  M +KLF+L     + +NPDSL NQE+L PG L 
Sbjct: 111  QAAEFLFNQCICIHLKSNTEKFYVLCLMTRKLFALAKGECMEENPDSLVNQEVLTPGQLF 170

Query: 329  TIYLKEKLEDWLRKGKKLIQDEIENNGKKFDF-FNLANIKKVMEKNPSKQIGTSIETMLK 387
             ++LKEK+E WL      I+  ++   +K D   N  N+ K+   N    +    E +L 
Sbjct: 171  LMFLKEKMEAWLVS----IKIALDKKAQKTDVSINTDNLMKIF--NLGTDLTKPFEYLLA 224

Query: 388  TGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWG 447
            TG L ++TGL   Q +G  V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWG
Sbjct: 225  TGNLRSKTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWG 284

Query: 448  FLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPK 507
            FLCPVHTPDGEPCGL+NH+T+ C V + +              S+  +L  +G+ P    
Sbjct: 285  FLCPVHTPDGEPCGLMNHLTAICEVVTQF----------AYTASVPALLCSLGVTP---- 330

Query: 508  LVKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL 563
             V   P    S    VLLDG +VG +       +   LR  KV     IP  +EV  +P+
Sbjct: 331  -VDGAPHRPYSECYPVLLDGVMVGWVDKELAPSIADSLRHFKVLREKRIPPWMEVALIPM 389

Query: 564  S-LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRR 622
            +     YPGL+LFT+P + VRPV+N+ L  EE     LIG  EQ+FM I   +       
Sbjct: 390  TGKPSLYPGLFLFTTPCRLVRPVQNLELGREE-----LIGTMEQIFMNIAIFED----EV 440

Query: 623  NAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKL 682
             A   TH+E+ P  +LSV+AN  P+SDHNQSPRNMYQCQM KQTMGF +   + R+D KL
Sbjct: 441  FAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYRDRSDNKL 500

Query: 683  YHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG 742
            Y LQTPQ+P+VR   Y  Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG  HG
Sbjct: 501  YRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHG 560

Query: 743  QIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYD 802
             +Y++E IDLS+   + D       +  D + +   +D DGLP++G  +  G+PY S  +
Sbjct: 561  SVYKSEFIDLSEKIKQGDDSLVFGVKPGDPRIVQK-LDDDGLPFIGAQLQYGDPYYSYLN 619

Query: 803  KTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQK 861
              T        K  E+  VD + V   ++ +   K   I  R  RNP IGDKF+SRHGQK
Sbjct: 620  LNTGESFVMYYKSKENCIVDNIKVCSNDTGSGKFKCICITMRVPRNPTIGDKFASRHGQK 679

Query: 862  GVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATP 921
            G+ S+LWP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+A K  +LHG   DATP
Sbjct: 680  GILSRLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATP 738

Query: 922  FANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVY 981
            F  S           E  S ++  GEML+  G+N++G E LYSG+ G EL  +IFIG VY
Sbjct: 739  FIFS-----------EENSALEYFGEMLKAAGYNFYGTERLYSGISGVELEADIFIGVVY 787

Query: 982  YQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRL 1041
            YQRLRHMVSDKFQVR+TG  D++T QPI GR   GGIRFGEMERD+LLAHG ++LLHDRL
Sbjct: 788  YQRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRL 847

Query: 1042 HTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP---KKVTCHACQTSKGM 1098
              CSD  VA VC  CGS+L+     P           PP+ +    +K  C  C  S  +
Sbjct: 848  FNCSDRSVAHVCVKCGSLLSPLLEKP-----------PPSWSAMRNRKYNCTLCNRSDTI 896

Query: 1099 ETVAMPYVFRYLAAELAAMNIKITLQL 1125
            +TV++PYVFRY  AELAAMNIK+ L +
Sbjct: 897  DTVSVPYVFRYFVAELAAMNIKVKLDV 923


>gi|302903611|ref|XP_003048895.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256729829|gb|EEU43182.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 1195

 Score =  802 bits (2071), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 470/1160 (40%), Positives = 660/1160 (56%), Gaps = 177/1160 (15%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPV--VRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
            CR+  ++Y G+L A +E++ ++ G P+  VRE   FGQ P+M+K+ RCHL+G     LV 
Sbjct: 118  CRERHVTYRGRLSATLEYR-INGGDPIEFVRE---FGQVPIMIKSNRCHLEGNSPALLVE 173

Query: 96   LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
             KEE+ E+GGYFI+NG+E++ R + L K+N+PM++ R SF++R  GYT   +++R VR D
Sbjct: 174  RKEESEELGGYFIVNGIEKIIRMLQLNKRNFPMAINRPSFQNRGPGYTPYGIILRAVRPD 233

Query: 156  QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
            ++S T  L+YL +G++   F  +  EYL+PV ++LKALV+TND EIF  L          
Sbjct: 234  ETSQTNVLHYLNDGNMTFRFSWRKNEYLIPVMMILKALVETNDREIFEGLV--------- 284

Query: 216  EKGAVGSP-----LVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAV 270
              G VGS       +++R++++L   +  +L ++ +   ++GE F+ V+    + S   V
Sbjct: 285  --GPVGSKSTENTFLTDRIELLLRTYKSYNLYSKSETRAYLGEKFRVVLGVPDTMSNLDV 342

Query: 271  AETVIRDYIFVHLND-------NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILL 323
                +R  + VHL +       +N+KF LL+FM++KL++LV      DNPD++QNQEILL
Sbjct: 343  GTEFLRRIVLVHLGNVDVTEEQDNEKFKLLLFMIRKLYALVAGECAVDNPDAVQNQEILL 402

Query: 324  PGHLITIYLKEKLEDWLRKG-KKLIQDEIENNGK--------KFDFFNLANIKKVMEKNP 374
             G L    LKE+L+++L    +  ++D +  N          + DF N  NI +   +N 
Sbjct: 403  GGFLYGQILKERLDEFLSVNVRASLRDYLRRNPTVPFTSEDFRKDFPN--NIFRKANEN- 459

Query: 375  SKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLR 434
               +G ++E  L TG + + +GLDLQQ AG+TV AE+LNFLRFIS FR VHRGA FA L+
Sbjct: 460  ---LGNALEYFLSTGNMQSPSGLDLQQTAGFTVVAEKLNFLRFISHFRMVHRGAFFAQLK 516

Query: 435  TTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILR 494
            TT+VRKLLPESWGF+CPVHTPDG PCGLLNH+   C++ +  DS     D S +  + L 
Sbjct: 517  TTAVRKLLPESWGFMCPVHTPDGAPCGLLNHLAHKCKIMT--DSV----DVSHI--AALA 568

Query: 495  VLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPD 554
              +G+  + S      +     + V+LDG+++G     E  ++    R  KV     +P 
Sbjct: 569  AELGIVDVSS------ASTEENVVVMLDGKILGFCTPKESVRIADCFRYWKVEGTHGVPL 622

Query: 555  DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC- 613
             LE+GYVP S GG+YPG+Y+ ++P + VRPV+ + L  E+      +GP+EQ +M I   
Sbjct: 623  QLEIGYVPPSHGGSYPGIYMTSTPARMVRPVKYLPLQKED-----WVGPYEQPYMSIAVV 677

Query: 614  PDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQA 673
            P   + G+     +TH E  PT MLS++AN+TP+SD NQSPRNMYQCQM KQTMG     
Sbjct: 678  PQEVESGK-----STHVEFDPTNMLSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPSTN 732

Query: 674  LKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKS 733
            L++R D K Y +QT QTP+VR   +  YG D +P G NA+VAV++YTGYDM+DAMILNKS
Sbjct: 733  LRYRTDNKSYRIQTGQTPVVRAPLHNTYGFDNFPNGMNAVVAVISYTGYDMDDAMILNKS 792

Query: 734  SVDRGMCHGQIYQTETIDLSDDG-----NKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVG 788
            + +RG  HG IY+T+ I L DD        V +       +  + S   ++D DGLP+VG
Sbjct: 793  AHERGFGHGTIYKTKKISLKDDSRTKATKSVTKAFGFAPHSYVSASYQGMLDDDGLPHVG 852

Query: 789  QMIHPGEPYCSIYDKTT--NSWRTN--------SRKGSESVFVDYVAVDMKNSKNLP-QK 837
            +MI  G+  C+ +  T   N    N          K  E+ FV+ V +    + N P Q 
Sbjct: 853  RMIQEGDVICAWHTVTPDYNGKLVNLDGITHYEKYKDGETGFVEEVRLIGAETGNEPLQT 912

Query: 838  ANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMT 897
             +++FR  R+PIIGDKFSSRHGQKGV SQ WP                            
Sbjct: 913  ISVKFRVPRSPIIGDKFSSRHGQKGVASQKWP---------------------------- 944

Query: 898  IAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYH 957
                        G+LHG   D+TPF             DE  +  D  G  L   G+NYH
Sbjct: 945  ----------TAGALHGLAQDSTPFK-----------FDEENTAADYFGHQLMKAGYNYH 983

Query: 958  GVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGG 1017
            G E +YSG+ G EL  +I+IG VYYQRLRHMV+DK+QVR+TG +   T QPIKGRKRGGG
Sbjct: 984  GNEPMYSGITGEELAADIYIGVVYYQRLRHMVNDKYQVRTTGPVVPTTGQPIKGRKRGGG 1043

Query: 1018 IRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVL----TATFIHPQKRAIR 1073
            IR GEMERD+LLAHG A+LL DRL  CSDY  + +C  CGS L    T +   P K+   
Sbjct: 1044 IRVGEMERDALLAHGTAFLLQDRLLNCSDYSKSWICRRCGSFLSVQPTVSQFAPGKK--- 1100

Query: 1074 EIGGLPPARAPKKVTCHACQT----SKGME------------------------TVAMPY 1105
                    +A   V C  C      ++G++                         V +P 
Sbjct: 1101 --------KAASIVRCRNCAVKLDDAEGIDLTEIQGEIWEDGQGNSWVGGDHTTQVVVPG 1152

Query: 1106 VFRYLAAELAAMNIKITLQL 1125
              +YL  ELAAM IK+  ++
Sbjct: 1153 ALKYLDVELAAMGIKLKYRV 1172


>gi|307213328|gb|EFN88780.1| DNA-directed RNA polymerase I subunit RPA2 [Harpegnathos saltator]
          Length = 1119

 Score =  801 bits (2068), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/1169 (39%), Positives = 674/1169 (57%), Gaps = 132/1169 (11%)

Query: 12   LRELVRHHIESFDYMLDEGLSEMFD----------------------------------- 36
            L+ L   HIESF+YML++GL E                                      
Sbjct: 25   LQNLGIPHIESFNYMLEDGLLEGLKDSPPVYLNLPNNDKIALWLDDVCIYQPTVPTGVIG 84

Query: 37   ---------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQG 87
                      CRQ   +Y GK+   + +         + +  + G+ P+M+K+ RC+L  
Sbjct: 85   VKNYKIYPTECRQRGSTYRGKITVKLGWSINGVQQETLEK--DLGEVPIMVKSNRCYLNK 142

Query: 88   ADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAV 147
             + ++LV   E   E GGYFI+ GLER+ R +++ ++NYP++M RS ++ R   ++D  +
Sbjct: 143  MNPKQLVEHGEHEQEWGGYFIIKGLERIVRMLLMTRRNYPIAMKRSGWKSRGIQFSDLGI 202

Query: 148  VIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTC 207
            ++R VR D ++ T  L+Y+++GS +  F  +   Y +P+ ++LK L+D  D+ I+N L  
Sbjct: 203  LLRTVRDDNTATTNVLHYVMDGSAKFMFMYRKVLYYVPLLLMLKCLIDITDVCIYNALIA 262

Query: 208  -CYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ-PVIDGLQSE 265
             C D+ Y K  G + +         +L  V + +L +  QC  +IG+ F+    +     
Sbjct: 263  GCEDDLYYK--GCILN---------MLRAVHEENLHSHEQCKAYIGKIFRVKFFEAPPDA 311

Query: 266  SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPG 325
            +   + + +I+  + +HLN   DKF+LL+FM +KLF+  ++    +  D +  QE LL G
Sbjct: 312  TDIDICDYIIKHCVAIHLNKPADKFHLLVFMTKKLFTFANNKCAVEGADGVMMQECLLGG 371

Query: 326  HLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIET- 384
            HL    +KEKL  WL   K  I     + G ++       I  V E   + + G+SIE+ 
Sbjct: 372  HLYLQVIKEKLISWLTSLKITILKRANSAGNRY-------ILTVQEMLNASKFGSSIESQ 424

Query: 385  ---MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKL 441
                L TG L + TGL L Q  G T+ AE +N +R++S FRA+HRG+ F  +RTT  R+L
Sbjct: 425  MENFLSTGNLKSSTGLGLTQSTGLTIVAENINRMRYMSHFRAIHRGSFFQEMRTTETRQL 484

Query: 442  LPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGM 501
            LP++WGF+CPVHTPDG PCGLLNH+T  C V  + D         K++ +I R+L+ +GM
Sbjct: 485  LPDAWGFICPVHTPDGTPCGLLNHLTMNCIVTKHPDC--------KLKAAIPRILVDLGM 536

Query: 502  IP-SLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGY 560
            IP S+    K+      +V+LDG+V+G+I  + I +V   LR LKV+   V P+ LE+  
Sbjct: 537  IPLSIANNWKNS----YTVMLDGKVIGLIEDNIINRVTCKLRELKVNGEEV-PNTLEIAL 591

Query: 561  VPL-SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC--PDGG 617
            VP  ++   YPGLYLFT+  + +RPV N++     +Q IELIG FEQV+++I C  P+  
Sbjct: 592  VPKKTIPAQYPGLYLFTNAARMMRPVINLA-----TQKIELIGTFEQVYLDI-CVIPEEA 645

Query: 618  DGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFR 677
              G       +H+E+  T +LS +A L P  D NQSPRNMYQCQM KQTMG      + +
Sbjct: 646  YDGL-----TSHQELSNTTILSNLACLIPMPDCNQSPRNMYQCQMGKQTMGTPCHNWQLQ 700

Query: 678  ADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDR 737
            +  KLY LQTP TP  R   Y    +D++  GTNAI+AV++YTGYDMEDAM++NK++ DR
Sbjct: 701  SQTKLYRLQTPATPFFRPVHYDNINMDDFAMGTNAIIAVISYTGYDMEDAMVINKAAYDR 760

Query: 738  GMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPY 797
            G  +G IY++E +DL+D        +  F RN D   L   +D DGLP +G  I  G+ Y
Sbjct: 761  GFAYGMIYKSEFVDLNDQ-------RSYFARNPDKTCLGETLDVDGLPMIGTRIKEGDIY 813

Query: 798  CSIYDKTTNSWRTNSRKGSESVFVDYVAV-DMKNSKNLPQKANIRFRHTRNPIIGDKFSS 856
               YD   +++ T +    E  +VD V +    NSKN+ ++A I FR +RNP +GDKF+S
Sbjct: 814  YCYYDADQSTYVTGTYYSKEDAYVDNVKLCGTLNSKNV-RRACITFRISRNPNVGDKFAS 872

Query: 857  RHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKF 916
            R GQKG+CSQ WP  D+PF+  +G+ PD+I NPH FPSRMTIAM++E +A K  ++HG  
Sbjct: 873  RAGQKGICSQKWPAEDLPFTE-SGLIPDIIFNPHGFPSRMTIAMMIEVMAGKSAAVHGLV 931

Query: 917  MDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIF 976
             DATPF             DE  + +D  G++L   G+NY+G E +YSGV G E+  +IF
Sbjct: 932  HDATPFR-----------FDEENTAIDYFGKLLEHAGYNYYGTERMYSGVDGREMNADIF 980

Query: 977  IGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYL 1036
             G V+YQRLRHMVSDK+QVRSTG +D +TRQPIKGR+RGGG+RFGEMERD+LL+HG +YL
Sbjct: 981  FGIVHYQRLRHMVSDKWQVRSTGPVDLLTRQPIKGRRRGGGVRFGEMERDALLSHGCSYL 1040

Query: 1037 LHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSK 1096
            L DRL  CSD     VC  CG++L          AI        +   + + C  C   +
Sbjct: 1041 LQDRLFHCSDKISTSVCQSCGTLLGP--------AIEMT-----SSYERSIKCRLCGNDE 1087

Query: 1097 GMETVAMPYVFRYLAAELAAMNIKITLQL 1125
             ++T+ +PY+FR+L  +LA+ NI + LQ 
Sbjct: 1088 SIKTIEVPYIFRFLVTQLASCNINVKLQF 1116


>gi|402891940|ref|XP_003909186.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 5
            [Papio anubis]
          Length = 924

 Score =  799 bits (2064), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/986 (44%), Positives = 588/986 (59%), Gaps = 72/986 (7%)

Query: 149  IRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
            + CVR++ S+V + L+YL NG+V L F  + + + LP+G  LKALV  +D +IF  L   
Sbjct: 1    MHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI-- 58

Query: 209  YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYY 268
                  KE  +     VS+ ++I++ E      +T+ Q L ++GE F+  ++        
Sbjct: 59   ----KGKEDDSFLRNSVSQMLRIVMEE----GCSTQKQVLNYLGECFRVKLNVPDWYPNE 110

Query: 269  AVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
              AE +    I +HL  + +KF +L  M +KLF+L     + DNPDSL NQE+L PG L 
Sbjct: 111  QAAEFLFNQCICIHLKSSTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLF 170

Query: 329  TIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKT 388
             ++LKEKLE WL   K     + +      +  NL  I  +        +    E +  T
Sbjct: 171  LMFLKEKLEGWLVSIKIAFDKKAQKTNVSMNTDNLMRIFTM-----GIDLTKPFEYLFAT 225

Query: 389  GRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGF 448
            G L ++TGL L Q +G  V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGF
Sbjct: 226  GNLRSKTGLGLLQNSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGF 285

Query: 449  LCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKL 508
            LCPVHTPDGEPCGL+NH+T+ C V + +              SI  +L  +G+ P     
Sbjct: 286  LCPVHTPDGEPCGLMNHLTAVCEVVTQF----------VYTASIPALLCNLGVTP----- 330

Query: 509  VKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS 564
            V   P    S    VLLDG +VG +       +   LR  KV     IP  +EV  +P++
Sbjct: 331  VDGAPHRPYSECYPVLLDGVMVGWVDKELAPGIADSLRHFKVLREKRIPPWMEVVLIPMT 390

Query: 565  -LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRN 623
                 YPGL+LFT+P + VRPV+N+ L  EE     LIG  EQ+FM +   +        
Sbjct: 391  GKPSLYPGLFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQIFMNVAIFED----EVF 441

Query: 624  AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
            A   TH+E+ P  +LSV+AN  P+SDHNQSPRNMYQCQM KQTMGF +   + R+D KLY
Sbjct: 442  AGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLY 501

Query: 684  HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
             LQTPQ+P+VR + Y  Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG  HG 
Sbjct: 502  RLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGS 561

Query: 744  IYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDK 803
            +Y++E IDLS+   + D       +  D + L   +D DGLP++G  +  G+PY S  + 
Sbjct: 562  VYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQK-LDDDGLPFIGAKLQYGDPYYSYLNL 620

Query: 804  TTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKG 862
             T        K  E+  VD + V   ++ +   K   I  R  RNP IGDKF+SRHGQKG
Sbjct: 621  NTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKG 680

Query: 863  VCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPF 922
            + S+LWP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+A K  +LHG   DATPF
Sbjct: 681  ILSRLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPF 739

Query: 923  ANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYY 982
              S           E  S ++  GEML+  G+N++G E LYSG+ G EL  +IFIG VYY
Sbjct: 740  IFS-----------EENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYY 788

Query: 983  QRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLH 1042
            QRLRHMVSDKFQVR+TG  D++T QPI GR   GGIRFGEMERD+LLAHG ++LLHDRL 
Sbjct: 789  QRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLF 848

Query: 1043 TCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP---KKVTCHACQTSKGME 1099
             CSD  VA VC  CGS+L+     P           PP+ +    +K  C  C  S  ++
Sbjct: 849  NCSDRSVAHVCVKCGSLLSPLLEKP-----------PPSWSAMRNRKYNCTLCNRSDTID 897

Query: 1100 TVAMPYVFRYLAAELAAMNIKITLQL 1125
            TV++PYVFRY  AELAAMNIK+ L +
Sbjct: 898  TVSVPYVFRYFVAELAAMNIKVKLDV 923


>gi|221043492|dbj|BAH13423.1| unnamed protein product [Homo sapiens]
          Length = 924

 Score =  797 bits (2059), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/986 (44%), Positives = 587/986 (59%), Gaps = 72/986 (7%)

Query: 149  IRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
            + CVR++ S+V + L+YL NG+V L F  + + + LP+G  LKALV  +D +IF  L   
Sbjct: 1    MHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI-- 58

Query: 209  YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYY 268
                  KE  +     VS+ ++I++ E       T+ Q L ++GE F+  ++        
Sbjct: 59   ----KGKEDDSFLRNSVSQMLRIVMEE----GCLTQKQVLNYLGECFRVKLNVPDWYPNE 110

Query: 269  AVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
              AE +    I +HL  N +KF +L  M +KLF+L     + DNPDSL NQE+L PG L 
Sbjct: 111  QAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLF 170

Query: 329  TIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKT 388
             ++LKEKLE WL   K     + +      +  NL  I  +        +    E +  T
Sbjct: 171  LMFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMRIFTM-----GIDLTKPFEYLFAT 225

Query: 389  GRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGF 448
            G L ++TGL L Q +G  V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGF
Sbjct: 226  GNLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGF 285

Query: 449  LCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKL 508
            LCPVHTPDGEPCGL+NH+T+ C V + +              SI  +L  +G+ P     
Sbjct: 286  LCPVHTPDGEPCGLMNHLTAVCEVVTQF----------VYTASIPALLCNLGVTP----- 330

Query: 509  VKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS 564
            +   P    S    VLLDG +VG +       +   LR  KV     IP  +EV  +P++
Sbjct: 331  IDGAPHRSYSECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEVVLIPMT 390

Query: 565  -LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRN 623
                 YPGL+LFT+P + VRPV+N++L  EE     LIG  EQ+FM +   +        
Sbjct: 391  GKPSLYPGLFLFTTPCRLVRPVQNLALGKEE-----LIGTMEQIFMNVAIFED----EVF 441

Query: 624  AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
            A   TH+E+ P  +LSV+AN  P+SDHNQSPRNMYQCQM KQTMGF +   + R+D KLY
Sbjct: 442  AGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLY 501

Query: 684  HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
             LQTPQ+P+VR + Y  Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG  HG 
Sbjct: 502  RLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGS 561

Query: 744  IYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDK 803
            +Y++E IDLS+   + D       +  D + L   +D DGLP++G  +  G+PY S  + 
Sbjct: 562  VYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQK-LDDDGLPFIGAKLQYGDPYYSYLNL 620

Query: 804  TTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKG 862
             T        K  E+  VD + V   ++ +   K   I  R  RNP IGDKF+SR GQKG
Sbjct: 621  NTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRRGQKG 680

Query: 863  VCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPF 922
            + S+LWP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+A K  +LHG   DATPF
Sbjct: 681  ILSRLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPF 739

Query: 923  ANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYY 982
              S           E  S ++  GEML+  G+N++G E LYSG+ G EL  +IFIG VYY
Sbjct: 740  IFS-----------EENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYY 788

Query: 983  QRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLH 1042
            QRLRHMVSDKFQVR+TG  D++T QPI GR   GGIRFGEMERD+LLAHG ++LLHDRL 
Sbjct: 789  QRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLF 848

Query: 1043 TCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP---KKVTCHACQTSKGME 1099
             CSD  VA VC  CGS+L+     P           PP+ +    +K  C  C  S  ++
Sbjct: 849  NCSDRSVAHVCVKCGSLLSPLLEKP-----------PPSWSAMRNRKYNCTLCSRSDTID 897

Query: 1100 TVAMPYVFRYLAAELAAMNIKITLQL 1125
            TV++PYVFRY  AELAAMNIK+ L +
Sbjct: 898  TVSVPYVFRYFVAELAAMNIKVKLDV 923


>gi|308485788|ref|XP_003105092.1| hypothetical protein CRE_20709 [Caenorhabditis remanei]
 gi|308257037|gb|EFP00990.1| hypothetical protein CRE_20709 [Caenorhabditis remanei]
          Length = 1127

 Score =  797 bits (2059), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/1107 (39%), Positives = 654/1107 (59%), Gaps = 84/1107 (7%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CRQ  ++Y G L   ++         ++      G+ P+ML++  C+L+G   ++LV+  
Sbjct: 73   CRQRGLTYAGNLKVGIDVHVNGTRLDIIET--ILGKVPIMLRSEGCNLRGMSRKELVAAG 130

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EE  E GGYFI+NG E+V R +I  ++N+P++++R +F+++ + +++  V++R V+++ +
Sbjct: 131  EEPIEKGGYFIVNGSEKVIRLLIANRRNFPIAIIRKTFKEKGKLFSEFGVMMRSVKENHT 190

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            +V + L+YL  G+++L    + + + +P+  V+KAL + ND  I              ++
Sbjct: 191  AVMMTLHYLDTGTMQLALQFRREIFYVPLMYVVKALTNKNDAVIMAGF----------KR 240

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQS--ESYYAVAETVI 275
            G       S  V  +LA+ Q+  +  +   ++ IG  F+  I    +  E      + +I
Sbjct: 241  GRNQDQFFSSCVLNMLAQCQEEGILHQESAIRAIGSRFRVAIADRIAPWEDDLEAGKFII 300

Query: 276  RDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEK 335
            R+ + VHL+ + +KF +L +M QKL +L+      + PD+ Q QE  + GH++ + L+E+
Sbjct: 301  RECVLVHLDSDEEKFYMLAYMAQKLIALIKGECAPETPDNPQFQEASVSGHILLLILRER 360

Query: 336  LEDWLRKGKKLIQDEIENNGKKFDF-FNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQ 394
            +E+ +     +++ ++E    + DF    + I K +  +   +I   +   L TG L T+
Sbjct: 361  MENII----GVVRRKLEFMSSRKDFILTSSAILKALGNHTGGEITRGMAYFLATGNLVTR 416

Query: 395  TGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHT 454
             GL LQQ +G++V AER+N LRF+S FRA+HRGA F  +RTT VRKL PE+WGF+CPVHT
Sbjct: 417  VGLALQQESGFSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICPVHT 476

Query: 455  PDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPP 514
            PDG PCGLLNH+T++CR+ ++              +SI  +L  +GM     K V   PP
Sbjct: 477  PDGAPCGLLNHVTASCRIVTHLSDN----------SSIPSMLAELGMYTQ--KTVSLAPP 524

Query: 515  A--VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS-----LGG 567
               +  VL+DGR +G +P ++   +  +LR  KV+  + IP   E+  V  S     +  
Sbjct: 525  GEELYPVLMDGRYIGYVPIAKAASIERYLRCAKVANDARIPYTTEIALVRRSTDIKNIQT 584

Query: 568  AYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFP 626
             YPG+Y+ T P + +RPVRN+++ S     +E IG FEQV++ +   P+  + G      
Sbjct: 585  QYPGIYILTDPGRLIRPVRNLAMDS-----VEHIGTFEQVYLSVVLDPEEAEPG-----V 634

Query: 627  ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQ 686
              H+E+HP+ + S   NL P+ DHNQSPRN+YQCQM KQTMG +V +   RAD K+Y LQ
Sbjct: 635  TMHQELHPSCLFSFAGNLIPFPDHNQSPRNVYQCQMGKQTMGTAVHSWHSRADNKMYRLQ 694

Query: 687  TPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQ 746
             PQ P+++   Y KY +DEYP GTNA VAV++YTGYDMEDAM +NK+S  RG  HG + +
Sbjct: 695  FPQQPMLKLEAYEKYEMDEYPLGTNACVAVISYTGYDMEDAMTINKASYQRGFAHGTVIK 754

Query: 747  TETIDLSDDGNKVDRGQKLFRRN--KDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT 804
             E I+L  D  +    + +F +N  +D K+    + +DGLP  G+     E Y   ++  
Sbjct: 755  VERINLVTDRER----KTIFYKNPREDMKT----VSADGLPIPGRRYFLDEVYYVTFNME 806

Query: 805  TNSWRTNSRKGSESVFVDYV-AVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGV 863
            T  +R++    +E  +   V  V+   S +  Q A I++R  RNPIIGDKF+SRHGQKG+
Sbjct: 807  TGDFRSHKFHYAEPAYCGMVRIVEQSESGSGAQHALIQWRIERNPIIGDKFASRHGQKGI 866

Query: 864  CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFA 923
             S LWP   +PFS  TGM PD+I NPH FPSRMTI M++ES+A K  + HG+  DA+PF 
Sbjct: 867  NSFLWPIESLPFSE-TGMVPDIIFNPHGFPSRMTIGMMIESMAGKAAATHGENYDASPFV 925

Query: 924  NSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQ 983
                        +E K+ ++  GE+L   G+NY+G E  YSGV G ++  +IF G VYYQ
Sbjct: 926  -----------FNEDKTAINHFGELLTKAGYNYYGNETFYSGVDGRQMEMQIFFGIVYYQ 974

Query: 984  RLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHT 1043
            RLRHM++DKFQVR+TG +D IT QP+KGRK+GGGIRFGEMERD+++AHG +++L DRL  
Sbjct: 975  RLRHMIADKFQVRATGPIDPITHQPVKGRKKGGGIRFGEMERDAIIAHGTSFVLQDRLLN 1034

Query: 1044 CSDYHVADVCSLCGSVLT-------ATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSK 1096
            CSD  VA  C  CGS+L+          +  +KR+  E     P    +   C  C    
Sbjct: 1035 CSDRDVAYACRRCGSLLSVLMSSKAGAHLMKKKRSDNE-----PLDYTESQRCRTCDKDD 1089

Query: 1097 GMETVAMPYVFRYLAAELAAMNIKITL 1123
             +  + +P VFRYL AELAAMN+KI L
Sbjct: 1090 QVYLLQVPRVFRYLTAELAAMNVKIKL 1116


>gi|154274906|ref|XP_001538304.1| DNA-directed RNA polymerase I polypeptide 2 [Ajellomyces capsulatus
            NAm1]
 gi|150414744|gb|EDN10106.1| DNA-directed RNA polymerase I polypeptide 2 [Ajellomyces capsulatus
            NAm1]
          Length = 1214

 Score =  797 bits (2059), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/1167 (40%), Positives = 659/1167 (56%), Gaps = 154/1167 (13%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDA-GSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
             CR+   +Y G+L A +E++  +      VRE    GQ P+ML++ RCHL+    ++LV 
Sbjct: 126  ECRERHATYRGRLRARLEYRVNNGEWKESVRE---LGQVPIMLRSNRCHLEKCSPEQLVQ 182

Query: 96   LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
             KEE+ E+GGYFI+NG E++ R +I+ ++N+PM+++RSSF  R + YT   + IR VR D
Sbjct: 183  RKEESEELGGYFIVNGNEKLIRMLIVGRRNFPMAIIRSSFTKRGQTYTKYGIQIRSVRAD 242

Query: 156  QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
            Q+S T  L+YL +G+V   F  +  EYL+PV ++LKALV+TND EIF  L        ++
Sbjct: 243  QTSQTNVLHYLSDGNVTFRFSWRKNEYLVPVVMILKALVETNDREIFERLVG------RE 296

Query: 216  EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
                + +  V++RV+++L   +   L  R     ++GE F+PV+          V    +
Sbjct: 297  GSEGIKNSFVTDRVELLLRTYKGYKLYGRDDTRAYLGEKFRPVLGMPADIPDDMVGAEFL 356

Query: 276  RDYIFVHLND-------NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
            R  +  HL +       +NDKFN+++FM++KL++LV      DNPD++ NQE+LL G L 
Sbjct: 357  RKVVLPHLGNQNVTESQDNDKFNMILFMIRKLYTLVAGECAPDNPDAVSNQEVLLGGSLY 416

Query: 329  TIYLKEKLEDWLRKGKKLIQD-EIENNGKKFD--FFNLANIKKVMEKNPSKQIGTSIETM 385
             + LKE+LE+WLR    + +D    N   +F    F    + +++ +  ++ IG ++E  
Sbjct: 417  GMLLKERLEEWLRAFGPIARDWSFRNQNARFSDPRFEKEFLSRIVSRT-NENIGGALEYF 475

Query: 386  LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
            L TG L + TGLDLQQ +GYTV AE++NF RFIS FR +HRG+ FA L+TT+V    P  
Sbjct: 476  LSTGNLVSPTGLDLQQPSGYTVIAEKINFYRFISHFRMIHRGSFFAQLKTTTV----PHK 531

Query: 446  WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
                C + T + +  G+   ++    +   Y+S  ++ +                     
Sbjct: 532  ----CEIATSNLDVSGVPQLISD---LGVTYESSVSLDE--------------------- 563

Query: 506  PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
                       + V LDGR++G     +   +   LR  KV+    +P +LE+GY+P S 
Sbjct: 564  ----------CVVVQLDGRILGYCSPKQARMISDTLRYWKVAGNKSLPVELEIGYIPNSN 613

Query: 566  GGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNA 624
             G YPG+YLF+   + +RPVR + L       ++ +GPFEQ FMEI C P     G    
Sbjct: 614  RGQYPGIYLFSQCARMMRPVRYLPL-----DKLDYVGPFEQPFMEIACVPSDIMSG---- 664

Query: 625  FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
              +TH E  PT +LS+VAN+TP+SD NQSPRNMYQCQM+KQ MG    ++++R D KLY 
Sbjct: 665  -ISTHVEFDPTHILSIVANMTPFSDFNQSPRNMYQCQMSKQAMGTPGASIEYRTDNKLYR 723

Query: 685  LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI 744
            LQT QTP+VRT  Y  YG+D +P G NA+VAVL+YTGYDM+DAMI+NKS+ DRG   G I
Sbjct: 724  LQTGQTPVVRTPLYNSYGLDNFPNGMNAVVAVLSYTGYDMDDAMIINKSAHDRGFGWGTI 783

Query: 745  YQTETIDLSDDGNKVDRGQKLFRRNKD-----------AKSLHSVIDSDGLPYVGQMIHP 793
            Y+T+   L D   K  RG+   RR                     +D DGLP++G  +  
Sbjct: 784  YKTKIYSLDD---KESRGRGKARREVSKLFGFAPGSLIKGEWRHALDEDGLPHIGARVTE 840

Query: 794  GEPYCSI----YDKTTNSWRTN--------SRKGSESVFVDYVAVDMKNSKNLP-QKANI 840
            G    +     +D  +NS+ TN          K +E  ++D V +    +   P Q  ++
Sbjct: 841  GSIVAAWHTVRFDPVSNSY-TNIDGQTHLLKYKDTEEGYIDNVRILGSETGGDPCQAISV 899

Query: 841  RFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAM 900
            +FR  R P+IGDKFSSRHGQKGVCSQLWP IDMPFS  TG++PD+IINPHAFPSRMTI M
Sbjct: 900  KFRVPRKPVIGDKFSSRHGQKGVCSQLWPAIDMPFS-ETGIQPDIIINPHAFPSRMTIGM 958

Query: 901  LLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVE 960
             +ES+A K G+LHG   D+TPF  S           E  +  D  GE LR  G+N+HG E
Sbjct: 959  FIESLAGKAGALHGLAQDSTPFRFS-----------EEHTASDFFGEQLRKAGYNFHGNE 1007

Query: 961  VLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRF 1020
             +YSG+ G E   +I++G VYYQRLRHMV+DKFQVR+TG ++ +T QP+KGR +GGGIR 
Sbjct: 1008 PMYSGITGREFAADIYLGVVYYQRLRHMVNDKFQVRTTGPVNALTGQPVKGRAKGGGIRV 1067

Query: 1021 GEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGS-----VLTATFIHPQKR----- 1070
            GEMERDSLLAHGAA+LL DRL  CSD   + +C  CGS     V+ + F+ P K      
Sbjct: 1068 GEMERDSLLAHGAAFLLQDRLMNCSDTTRSWICRTCGSFLSTQVVVSKFMAPSKNPAMAA 1127

Query: 1071 AIREIGGLP-PARA-------PKKVTCHACQTSKGME----------------------T 1100
              +   GL  P  A          V C  C      +                       
Sbjct: 1128 VAKSSSGLGRPGGAMGALDGGAGVVRCRRCAKEAVFDDPRAEVWEDGEGRRFVGGDDTTV 1187

Query: 1101 VAMPYVFRYLAAELAAMNIKITLQLGD 1127
            VA+P V +YL  ELA M +K+T ++ +
Sbjct: 1188 VAVPGVLKYLDVELATMGVKMTFKVNN 1214


>gi|390339123|ref|XP_790504.3| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like
            [Strongylocentrotus purpuratus]
          Length = 1218

 Score =  796 bits (2057), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/1238 (39%), Positives = 675/1238 (54%), Gaps = 194/1238 (15%)

Query: 12   LRELVRHHIESFDYMLDEGLSEMF------------------------------------ 35
            L + VR HIESF+YMLD+GL++                                      
Sbjct: 50   LEDAVRPHIESFNYMLDDGLAQAVRNITPLEFLLDDERISLSYEDASVGVPTVARGNLFA 109

Query: 36   -------DHCRQAKISYTGKLMADVEFQYL--DAGSPVVRERFNFGQFPVMLKTRRCHLQ 86
                      RQ   +Y   L A V +Q    D+GS V+R     GQ P+++K + C+L 
Sbjct: 110  STLKVYPSESRQRGTTYQAPLQARVHWQSGNGDSGS-VMRP---LGQIPLLVKCKNCNLY 165

Query: 87   GADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKA 146
                 +LV  KEE+ EMGGYFI NG+E+V R +++P++N+PM++ RS ++ R +G+T+  
Sbjct: 166  NLSPSELVKRKEESCEMGGYFIANGIEKVIRMLVMPRRNFPMAINRSKWKTRGKGFTEFG 225

Query: 147  VVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLT 206
            V +RCVR DQS VT+ L+YL  GS+ + F    + + LP+ +VL+ALVDT+D  +++ L 
Sbjct: 226  VQMRCVRNDQSIVTITLHYLTTGSIVVSFAYNKEIFFLPLLLVLRALVDTSDQHVYDELV 285

Query: 207  CCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSES 266
                      KG      +   V  +L + Q  +L+++ Q L+HIGE F+  +      +
Sbjct: 286  ----------KGKEKDTFLIGCVTGMLRQTQTQNLSSQEQALEHIGERFRIKLSVPPWHT 335

Query: 267  YYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGH 326
                A+ +++  I VHL+ N DKFN L FM +KLF+       ++N DS  NQE+LL GH
Sbjct: 336  NVQTAKFLLQQCICVHLDSNQDKFNTLAFMARKLFAFNQGECAAENADSPMNQEVLLAGH 395

Query: 327  LITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIK-KVMEKNPSKQIGTSIETM 385
            L  + LKEKLE WL      ++  IE   KK   F L ++            +   +E +
Sbjct: 396  LYLMVLKEKLEGWLVN----LRYAIEKQAKKSRRFVLNDVSLNTAASTGPGDLTRKMEYL 451

Query: 386  LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
            + TG LA++TGL L Q +G TV A++LNF+RF+S FR +HRG+ FA +RTTSVRKLLPE+
Sbjct: 452  IATGNLASKTGLGLMQTSGMTVVADKLNFMRFLSHFRCIHRGSFFAEMRTTSVRKLLPEA 511

Query: 446  WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
            WGFLCPVHTPDG PCGL+NH+T+ C+V           +   +   +++ L  +GMIP L
Sbjct: 512  WGFLCPVHTPDGAPCGLMNHLTALCQVV----------NTQPLTLPLVKTLYALGMIP-L 560

Query: 506  PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS- 564
               +         V+LDGRV+G +P     ++ + L+ LKV   S +    E+  VP++ 
Sbjct: 561  DAPLPCPVSGCYEVVLDGRVLGYVPQDIATQLTSRLKILKVKGQSGVTPTTEIVLVPVTG 620

Query: 565  LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRN 623
             GG YPGLY+FT+P +  RPVRN++L     Q  E IG FEQV+M+I   P         
Sbjct: 621  KGGQYPGLYIFTTPTRLYRPVRNLAL-----QETEYIGTFEQVYMDIAVTPSEIHEKVCR 675

Query: 624  AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
                TH E++ + +LSV A+LTP+SD NQSPRNMYQCQM KQTMGF    L FR D K+Y
Sbjct: 676  TLITTHLELNESSILSVSASLTPFSDFNQSPRNMYQCQMGKQTMGFPSHTLPFRIDHKMY 735

Query: 684  HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTG----YDMEDAMILNKSSV---- 735
             LQTPQTP+VR + Y KY  D+YP GTNA+VAV++YT     Y   +  +++   V    
Sbjct: 736  KLQTPQTPMVRPHAYDKYDFDDYPLGTNAVVAVISYTTKIEKYKGSEVAVVDNVKVTGND 795

Query: 736  ------------------------------DRGMCHGQIYQTETIDLSDDG--------- 756
                                           +G+C  Q + TE +  ++ G         
Sbjct: 796  LGNQVCQRAFIQLRIQRNPIIGDKFSSRHGQKGVC-SQRWPTEDMPFTESGMTPDILFNP 854

Query: 757  ----NKVDRGQKLFRRNKDAKSLHSVI----------DSDGLPYVGQMIHPG-------E 795
                +++  G  +      + SLH +           +   + Y G+++  G        
Sbjct: 855  HGFPSRMTIGMMIESMAGKSASLHGLCHDATPFTFSEEQPAVDYFGKLLTAGYFHHSYVN 914

Query: 796  PY--CSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKN-LPQKANIRFRHTRNPIIGD 852
            P+  C      +   +    KGSE   VD V V   +  N + Q+A I+ R  RNPIIGD
Sbjct: 915  PHFKCRYTRLDSGQTKIEKYKGSEVAVVDNVKVTGNDLGNQVCQRAFIQLRIQRNPIIGD 974

Query: 853  KFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSL 912
            KFSSRHGQKGVCSQ WP  DMPF+  +GM PD++ NPH FPSRMTI M++ES+A K  SL
Sbjct: 975  KFSSRHGQKGVCSQRWPTEDMPFTE-SGMTPDILFNPHGFPSRMTIGMMIESMAGKSASL 1033

Query: 913  HGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELT 972
            HG   DATPF  S           E +  VD  G++L   G+NY+G E +YSG  G EL 
Sbjct: 1034 HGLCHDATPFTFS-----------EEQPAVDYFGKLLTAGGYNYYGTERMYSGTSGVELE 1082

Query: 973  CEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHG 1032
             +IFIG VYYQRLRHMVSDKFQVRSTG +D +T QP+KGRKR GGIRFGEMERD      
Sbjct: 1083 ADIFIGVVYYQRLRHMVSDKFQVRSTGPVDILTHQPVKGRKRAGGIRFGEMERDXXXTR- 1141

Query: 1033 AAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPP-----ARAPKKV 1087
                               +C+ CG++L    IH +K + R   G        + A +K 
Sbjct: 1142 -------------------ICTKCGTLLG---IHLEKLSDRSSDGKLDLQDMLSSAQRKW 1179

Query: 1088 TCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
             C  C+TS  +ET+ +PYVF+YL AEL+AMNIK TL++
Sbjct: 1180 FCATCETSDNIETITVPYVFQYLVAELSAMNIKATLEV 1217


>gi|403182650|gb|EJY57536.1| AAEL017010-PA [Aedes aegypti]
          Length = 1129

 Score =  796 bits (2055), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/1173 (38%), Positives = 651/1173 (55%), Gaps = 128/1173 (10%)

Query: 10   EPLRELVRHHIESFDYMLDEGLSEMF---------------------------------- 35
            E L  L   H++SF+YML+EG+ ++                                   
Sbjct: 23   EILANLGTPHVDSFNYMLEEGIEDVIRRLEPVEFELPNKNRVRLRISDCSIAKPSVPLNQ 82

Query: 36   ----------DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHL 85
                        CRQ   +Y G  M  +   +   G P      + GQ P+ML+++ C+L
Sbjct: 83   LNAKEKRIFPSECRQKNETYAG--MCTIVIDWDVNGQPKPPITKDIGQLPIMLRSKACNL 140

Query: 86   QGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDK 145
             G   Q+LV   E   E GG+FI+ GLE++ R +I+ ++NYP+++ R+S++DR + ++  
Sbjct: 141  GGLSPQELVERMEHEDEWGGHFIVRGLEKLIRMIIMTRRNYPIALNRNSWKDRGKEFSST 200

Query: 146  AVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHL 205
             V+IRCV+ DQ+S    L+YL+NG+ +L F ++     +P+ +++KAL    D EI+  L
Sbjct: 201  GVMIRCVKTDQTSTNNVLHYLVNGTAKLMFSIRKSLTFVPIVMLMKALSHYTDNEIYKRL 260

Query: 206  TCCY-DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQS 264
               + D++Y K             ++ +L E+ +  +  +++C  +IG  F+  +  L  
Sbjct: 261  IAGFEDDQYYKHC-----------IQNMLRELHEEGIHNQVECKNYIGNVFRQKLYNL-- 307

Query: 265  ESYYAVAET---VIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEI 321
             S+Y   ET   +++  + +HL+D+ DKFNLL+FM+QKLF+        +  DS+  QE+
Sbjct: 308  PSWYTNEETADYLLKSCVLIHLDDDLDKFNLLVFMMQKLFTAAQGRCKPEGADSVMMQEL 367

Query: 322  LLPGHLITIYLKEKLEDWLRKGK----KLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQ 377
            LL GHL    L+E +  +L   K    KL  D         D  +L   + +M    +  
Sbjct: 368  LLGGHLYQKLLREHMISFLTGVKYNILKLCSD---------DDAHLTQNEMLMACKNTAN 418

Query: 378  IGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS 437
               S    L TG +   + + L Q +G  + AE +N +R++S FRAVHRG+ F  +RTT 
Sbjct: 419  FDRSFSNFLATGNMPKASEMGLMQDSGLVIVAENINRMRYMSHFRAVHRGSFFVTMRTTE 478

Query: 438  VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLI 497
             R+LLP++WGF+CPVHTPDG PCGLLNHMTS C V+   D         K  ++I   LI
Sbjct: 479  ARQLLPDAWGFICPVHTPDGTPCGLLNHMTSDCMVSKSADR--------KKISNIEACLI 530

Query: 498  GVGMIPSLPKLVKS-GPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDL 556
              GM P       +       SV+L+GR++G IP +     V  LR LK+     IP+  
Sbjct: 531  RFGMTPINSIAFDTFNVGDSYSVMLEGRIIGHIPKNIAGVAVHKLRLLKIEGQE-IPEAT 589

Query: 557  EVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC--P 614
            E+  VP   GG YPGLY+F    + +RPV N+      ++ IELIG FEQV+M+I C  P
Sbjct: 590  EIALVPSKEGGQYPGLYIFVGVARMMRPVMNLY-----ARKIELIGTFEQVYMDI-CITP 643

Query: 615  DGGDGGRRNAFP--ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQ 672
            +        ++P   TH E+  T  LS +A L P  D NQSPRNMYQCQM KQTMG    
Sbjct: 644  E-------ESYPNVTTHMELSKTSFLSNLAKLIPMPDCNQSPRNMYQCQMGKQTMGTPCH 696

Query: 673  ALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNK 732
              + +   K Y LQTP TP+ R   +    +D Y  GTNAIVAV++YTGYDMEDAMI+NK
Sbjct: 697  NWQQQCVSKFYRLQTPGTPLFRPVHHDNIDLDNYAMGTNAIVAVVSYTGYDMEDAMIINK 756

Query: 733  SSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIH 792
            S+ +RG  HG IY+ E I+L        +G   F R+   ++L   +D+DGLP+    + 
Sbjct: 757  SAFERGFAHGNIYKNEFIEL--------KGDSFFARDPRNENLRPFLDNDGLPFKSAKLS 808

Query: 793  PGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGD 852
               P    +D   +S+      G E   VD V +    S + P++A I FR  RNP +GD
Sbjct: 809  LKTPLYCYFDTNDHSYHIVKFHGHEDAIVDNVKLCGSTSSSAPKRAVITFRIVRNPNVGD 868

Query: 853  KFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSL 912
            KF+SR GQKG+CSQ WP +D+PF+  +GM PD+I NPH FPSRMTIAM++E++A K G+ 
Sbjct: 869  KFASRAGQKGICSQKWPAVDLPFTE-SGMIPDIIFNPHGFPSRMTIAMMIETMAGKTGAC 927

Query: 913  HGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELT 972
            HG   DATPF    + T  +TG       +D  G +L   G+NYHG E +YSGV G E+ 
Sbjct: 928  HGLVHDATPF----RFTENNTG-------IDYFGRLLEASGYNYHGTERMYSGVDGREMK 976

Query: 973  CEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHG 1032
             +IF G V+YQRLRHMVSDK+QVRSTG +DQ+T QP KGR RGGG+RFGEMERD+L+AHG
Sbjct: 977  ADIFFGIVHYQRLRHMVSDKWQVRSTGPLDQLTHQPNKGRSRGGGVRFGEMERDALIAHG 1036

Query: 1033 AAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHAC 1092
            A++LL DRL   SD     VC  CG++L      P     + +            TC  C
Sbjct: 1037 ASFLLQDRLFHGSDKITTLVCRSCGTLLG-----PISSITKRVATNSSETHRTPATCRLC 1091

Query: 1093 QTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
            ++ K +  V +PY+F++L ++L AMNI + L L
Sbjct: 1092 RSDKEIGYVEIPYIFKFLVSQLTAMNINVKLDL 1124


>gi|167393760|ref|XP_001740696.1| DNA-directed RNA polymerase I subunit RPA2 [Entamoeba dispar SAW760]
 gi|165895066|gb|EDR22870.1| DNA-directed RNA polymerase I subunit RPA2, putative [Entamoeba
            dispar SAW760]
          Length = 1106

 Score =  795 bits (2053), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/1162 (38%), Positives = 655/1162 (56%), Gaps = 119/1162 (10%)

Query: 12   LRELVRHHIESFDYMLDEGLSEMFDH---------------------------------- 37
            L+EL R H ESF+Y L++G  ++  +                                  
Sbjct: 11   LKELTRAHTESFNYFLEKGKEDILKYMKKYKIIKKDSTELMELSCTGISIEKPRYNGLPL 70

Query: 38   ----CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHL--QGADSQ 91
                CR A ++Y+GK+   +  +  +    +     + G+ P+M+ T +C +  +    +
Sbjct: 71   FPYMCRSAALTYSGKIRLTITIKENETSKTI---EVDGGEIPIMVGTSKCWIGSEYITPE 127

Query: 92   KLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC 151
            + ++++E+  E+GGYFI+NG+ER  R ++  K N+P++++R S+ ++   +T   ++IRC
Sbjct: 128  ERINIREDPHEIGGYFIINGIERYLRMIVYAKANHPLAVIRPSWTNKGAHFTKYGIIIRC 187

Query: 152  VRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDE 211
            +R+D +++T  L++L NG V L F  + +E+ +PV ++L+     +D EIF  +T    E
Sbjct: 188  MREDITTLTNTLHFLDNGKVTLRFIFKKQEFFIPVVLLLRVYGGMSDREIFELITMNNYE 247

Query: 212  KYKKEKGAV-------GSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQS 264
                   A        GSPL                L T  Q L +IG  F+ ++D  + 
Sbjct: 248  NSNLVNAAEMLVRRENGSPLNG--------------LNTPEQVLSYIGSKFRLIMDSTEG 293

Query: 265  ESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLP 324
             +   + + V+ ++  VHL+  ++K +LLIFMLQKLF+LV      +  D+  +Q +LLP
Sbjct: 294  VNDIELGKRVLEEFCLVHLSSYSEKSDLLIFMLQKLFALVHGEIDEEGVDTPMSQGVLLP 353

Query: 325  GHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIET 384
            GHL    +KE++++ L K +  I  ++++  K         +++++  N +K  GT I++
Sbjct: 354  GHLYQTVIKEEIQNILSKARLFILKDLKDVKKGSKITERVYLQRIL-SNVAKSFGTRIKS 412

Query: 385  MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPE 444
             + TG   T +  DLQQ  G+++ AERLN  RF S F +VHRGA +  ++TTS+RKL+PE
Sbjct: 413  FISTGNFETSSTTDLQQTNGFSITAERLNHSRFTSHFVSVHRGAFYTTMKTTSIRKLVPE 472

Query: 445  SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
            +WGF+CPVHTPDG PCGLLNH   +CR+        N R        I+ +   +GM+ +
Sbjct: 473  AWGFMCPVHTPDGAPCGLLNHFAVSCRI--------NARKHPLPEQKIIDLCTELGMVST 524

Query: 505  -LPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL 563
               KL    P   + VLL+G+V+G +   EI   V  LR  +      IP+ LE+GY   
Sbjct: 525  QFMKL----PSIYIPVLLNGKVIGKVSPHEINSFVQQLRYERAIYNPKIPNTLEIGYCDG 580

Query: 564  SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRN 623
             L   Y  LYL   P + +RPV +       + NI  IGP+EQVF++I+C D  +G    
Sbjct: 581  YLQDGYHALYLNNLPGQMIRPVIH-----RATGNIVNIGPYEQVFLDIKCGDSIEGMNN- 634

Query: 624  AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
               A +EEI     LS++A LTP+   NQSPRNMYQCQMAKQTMG    + K+R+D KL 
Sbjct: 635  ---AEYEEISALNSLSLLATLTPFCHMNQSPRNMYQCQMAKQTMGIPALSNKYRSDTKLL 691

Query: 684  HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
             L  PQ  I +      +G +EYPTG NAIVAV++YTGYDMEDA+I+ KS+++RG  HG 
Sbjct: 692  WLHYPQRSICQCALMEPFGFNEYPTGANAIVAVISYTGYDMEDALIIKKSAIERGFGHGS 751

Query: 744  IYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDK 803
             Y+   +D   +G K +    +       +     +D DGLP  G+ I    P  S  DK
Sbjct: 752  QYKAYKVDFEKEGEKNEMFSGI---TSSGEIFDEHLDDDGLPRPGE-IFENSPIYSHIDK 807

Query: 804  TTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGV 863
             T   +     G          V   N  +  QKA +R R+ R P+IGDKFSSRHGQKG 
Sbjct: 808  ITGKIKGKVLMGERGYIESVRIVGGDNIDSGLQKAVVRVRYNRTPVIGDKFSSRHGQKGT 867

Query: 864  CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFA 923
             S  + + DMPF+  +GM PD+IINPHAFPSRMTIAML+ES+A+K G+L G++ DATPF 
Sbjct: 868  LSLHYQEKDMPFTE-SGMTPDIIINPHAFPSRMTIAMLVESMASKVGALKGEYQDATPFK 926

Query: 924  NSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQ 983
                        DE  + VD  G+ L   G+NY+G E LYSG+YG EL  +I+IG VYYQ
Sbjct: 927  -----------FDEENTAVDYFGKQLLKYGYNYYGSEPLYSGIYGNELQSDIYIGVVYYQ 975

Query: 984  RLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHT 1043
            RL H V DK+QVRSTG +  +T QPIKGRKRGGGIRFGEMERDSL+AHG + L+HDRL  
Sbjct: 976  RLVHQVKDKYQVRSTGPISIVTHQPIKGRKRGGGIRFGEMERDSLVAHGTSMLVHDRLFE 1035

Query: 1044 CSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAM 1103
            CSD     VC+ CGS+ T       KR          ++   K+ C +C  +  ++ + +
Sbjct: 1036 CSDKCYHYVCTKCGSICTI------KR----------SKEYDKMICQSCGPTSIVKKIQI 1079

Query: 1104 PYVFRYLAAELAAMNIKITLQL 1125
            PYVFRYLAAEL+AMN+++ L++
Sbjct: 1080 PYVFRYLAAELSAMNVRLNLKV 1101


>gi|302847118|ref|XP_002955094.1| hypothetical protein VOLCADRAFT_95925 [Volvox carteri f. nagariensis]
 gi|300259622|gb|EFJ43848.1| hypothetical protein VOLCADRAFT_95925 [Volvox carteri f. nagariensis]
          Length = 1095

 Score =  795 bits (2052), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 471/1179 (39%), Positives = 646/1179 (54%), Gaps = 199/1179 (16%)

Query: 15   LVRHHIESFDYMLDEGLSEMFDH------------------------------------- 37
            LV  H+ES++Y + EG+  + ++                                     
Sbjct: 47   LVEPHVESYNYFISEGIDHVMENLKSYEVTHPGTGRTMRMWWTDVRVERPVREEGLKRSR 106

Query: 38   ------CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQ 91
                  CR+   +Y G L+A   +Q  D     V  +   G  P+M+++R C L G    
Sbjct: 107  RLLPRDCREGGTTYKGNLVATFNWQSGDGMEYTVERKL--GGMPIMVRSRACWLNGLTRG 164

Query: 92   KLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC 151
            +LV+ +EEA EMGGYFI NGLER+ R +IL +++Y M + R+++  R             
Sbjct: 165  ELVACREEANEMGGYFICNGLERIIRCLILQRRHYIMGLRRAAYHKR------------- 211

Query: 152  VRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDE 211
               D   +T+ ++ ++         ++G+                +D E++  L      
Sbjct: 212  ---DYKMMTMPMWVMV---------VRGQ---------------VSDRELYVKLVAGAAP 244

Query: 212  KYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVA 271
                         ++ER +++L +     L T+ QC++++G HF+ V++   S + + V 
Sbjct: 245  GSGAAA------FLAERAELLLRQADRPELRTKTQCIEYLGRHFRVVLEQPPSATDFEVG 298

Query: 272  ETVIRDYIFVHLNDNN--DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
            + ++R+Y+F+HL+     DK  LL+ ML KL++LV   +V DNPD+L + EILLPGHL+ 
Sbjct: 299  QVLLREYVFIHLDPERPADKLALLLAMLHKLYALVSGAAVEDNPDALTHHEILLPGHLLL 358

Query: 330  IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
             +LKE+LED L   + LI  ++ +  +  DF + + +  V++K P   IG   E ++ TG
Sbjct: 359  KFLKERLEDALGTARGLILRDLASKPESVDFTSESYMHNVIKKLPD--IGQKFEYLINTG 416

Query: 390  RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
             L ++ GLDL Q  G+TV AE+LNF R++S FR+VHRGA FA +RTT+VRKLLPESWGF+
Sbjct: 417  NLMSKDGLDLSQSTGFTVVAEKLNFFRYLSHFRSVHRGAYFAEMRTTTVRKLLPESWGFM 476

Query: 450  CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
            CPVHTPDG PCGLLNH T+ CR+ +    +       +M  SIL+ L             
Sbjct: 477  CPVHTPDGAPCGLLNHFTALCRIVTQGSDQPE-----RMEISILQAL------------E 519

Query: 510  KSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAY 569
               PP  L         G+ P+ +                  +P  +EV ++P  +GG Y
Sbjct: 520  TDTPPERL---------GLSPAEQD-----------------VPYHMEVVHIPPLVGGPY 553

Query: 570  PGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATH 629
            PG++LFT   + +RPV  +      S   E++G  EQ FM I+CPDGG GG       TH
Sbjct: 554  PGIFLFTQTARMIRPVVQLG-----SGRREMLGSLEQCFMSIQCPDGGHGGS-PGLAYTH 607

Query: 630  EEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQ 689
             E++ + MLSVVA+LTPYSD NQSPRNMYQCQMAKQTMG   QAL  R D K+Y LQTPQ
Sbjct: 608  RELNASAMLSVVASLTPYSDFNQSPRNMYQCQMAKQTMGTPAQALAHRTDTKMYRLQTPQ 667

Query: 690  TPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTET 749
             PI RT  Y +Y +DE+P GTNAIVAVLAYTGYDMEDAMILNKS+V+RG+ H  +Y+ ET
Sbjct: 668  APICRTIRYAEYKMDEFPNGTNAIVAVLAYTGYDMEDAMILNKSAVERGLAHASLYKVET 727

Query: 750  IDLSDDGNKVDRGQK-LFRRNKDAKSLHSVIDSDGLPYVGQMIHP-GEPYCSIYDKTTNS 807
            I+L ++     RG K +F     A   H     D L +  + +   G+ +        +S
Sbjct: 728  INLREE-----RGFKGMF-----AAEPHDRRSRDALAHRTRPVGAFGQRFPQNIPAAADS 777

Query: 808  WRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQL 867
                 ++G        V V   N+++       R      P +G       GQKGV S L
Sbjct: 778  PAVLRKRGEAGGDNGPVLVPEPNNRD-----GDRIEPDGLPAVGSIIWP--GQKGVLSIL 830

Query: 868  WPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVK 927
            WPD+DMPF   TG+RPDLIINPHAFPSRMTI ML+ES+ +KGG+L G+F+DA+PF  S  
Sbjct: 831  WPDVDMPFCASTGIRPDLIINPHAFPSRMTIGMLVESLVSKGGALAGQFVDASPFQRSDG 890

Query: 928  KTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRH 987
               G+         V+  GE L   GF+ +G E + SGV G E+ C+IFIGPVYYQRLRH
Sbjct: 891  VEKGNP--------VERWGEYLERQGFSRYGQETMISGVTGQEMPCDIFIGPVYYQRLRH 942

Query: 988  MVSDKFQVRSTGTMDQITRQPIK------------GRKRGGGIRFGEMERDSLLAHGAAY 1035
            MVSDKFQ    G    +   P                  GGGIRFGEMERDSLLAHGAAY
Sbjct: 943  MVSDKFQC--PGGFRNVVSVPRSPSFLGSSFTRSWAENFGGGIRFGEMERDSLLAHGAAY 1000

Query: 1036 LLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIG---GL----PPARAPKKVT 1088
            L HDRLH CSDYHVADVC+ CGS+L      P ++A        GL      A +  K  
Sbjct: 1001 LFHDRLHACSDYHVADVCTSCGSMLA-----PLRKAAANAALTTGLMLRGAVADSSGKTV 1055

Query: 1089 CHAC--QTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
            C  C   +S  +E VA+PYVFRYLA ELAAMN+K+ L++
Sbjct: 1056 CPQCAPDSSATIERVALPYVFRYLATELAAMNLKLELEV 1094


>gi|295673492|ref|XP_002797292.1| DNA-directed RNA polymerase I subunit RPA2 [Paracoccidioides sp.
            'lutzii' Pb01]
 gi|226282664|gb|EEH38230.1| DNA-directed RNA polymerase I subunit RPA2 [Paracoccidioides sp.
            'lutzii' Pb01]
          Length = 1220

 Score =  794 bits (2051), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 470/1170 (40%), Positives = 664/1170 (56%), Gaps = 154/1170 (13%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDA-GSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
             CR+   +Y G+L A +E++  +      VRE    GQ P+ML++ RC+L+    ++LV 
Sbjct: 126  ECRERHATYRGRLRARLEYRINNGEWKESVRE---LGQVPIMLRSNRCYLEKCSPEQLVQ 182

Query: 96   LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
             KEE+ E+GGYF++NG E++ R +I+ ++N+PM+++RSSF  R   YT   + IR VR D
Sbjct: 183  HKEESEELGGYFVVNGNEKLIRMLIVGRRNFPMAIIRSSFMKRGPTYTKFGIQIRSVRPD 242

Query: 156  QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
            Q+S T  L+YL +G+V   F  +  EYL+PV ++LK LV TND +IF  L       ++ 
Sbjct: 243  QTSQTNFLHYLSDGNVTFRFTWRKNEYLVPVVMILKGLVQTNDRDIFERLV-----GHEG 297

Query: 216  EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
             KG + +  V++RV+++L   +   +  R     ++GE F+PV+         AV    +
Sbjct: 298  SKG-IKNSFVTDRVELLLRTYKGYGIHGRDDIRAYLGEKFRPVLGMPTDIPDEAVGVEFL 356

Query: 276  RDYIFVHLND-------NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
            R  +  HL +       +NDKFN+++FM++KL++LV      DNPD++ NQE+LL G L 
Sbjct: 357  RKVVLPHLGNHSVTDSQDNDKFNMILFMIRKLYTLVAGDCAPDNPDAVSNQEVLLGGFLY 416

Query: 329  TIYLKEKLEDWLRKGKKLIQD-EIENNGKKFD--FFNLANIKKVMEKNPSKQIGTSIETM 385
             I LKE+LE+WLR    + QD  ++N   +F    F    + K++ +  ++ IG ++E  
Sbjct: 417  GILLKERLEEWLRSFGPIAQDWSVKNQNARFTDPKFEKEFLSKIVART-NENIGGALEYF 475

Query: 386  LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
            L TG L + TGLDLQQ +GYTV AE++NF RFIS FR +HRG+ FA L+TT+VRKLLPE 
Sbjct: 476  LSTGNLVSPTGLDLQQPSGYTVMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPE- 534

Query: 446  WGFLCPVHTPDGEPCGLLNHMTSTCRV-ASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
                                 T  C++  S  D  G           + +++  +G+   
Sbjct: 535  ---------------------THKCKIETSNLDVSG-----------VPQIISNLGVTSE 562

Query: 505  LPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS 564
                ++      + V +DGR++G     +   +   LR  KV     +P +LE+GYVP S
Sbjct: 563  SSVSLE----ESVVVQMDGRILGYCSPKQARIISDTLRYWKVEGNKSLPVELEIGYVPNS 618

Query: 565  LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRN 623
              G YPG+YLF+   + VRPV+ + L       ++ +GPFEQ FMEI C P     G   
Sbjct: 619  NRGQYPGIYLFSQCARMVRPVKYLPL-----DKLDYVGPFEQPFMEIACVPSDIISG--- 670

Query: 624  AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
               +TH E  PT +LS+VAN+TP+SD NQSPRNMYQCQM KQ MG    ++++R D KLY
Sbjct: 671  --VSTHVEFDPTYILSIVANMTPFSDFNQSPRNMYQCQMGKQAMGTPGTSIQYRTDNKLY 728

Query: 684  HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
             LQT QTPIVR   Y  YG+D +P G NA+VAVL+YTGYDM+DAMI+N+S+ DRG   G 
Sbjct: 729  RLQTGQTPIVRPPLYNCYGLDNFPNGMNAVVAVLSYTGYDMDDAMIINRSAHDRGFGWGT 788

Query: 744  IYQTETIDLSDDGNKVDRGQ------KLFRRNKDA---KSLHSVIDSDGLPYVGQMIHPG 794
            IY+T+   L D+     RG+      KLF               +D DGLP++G  +  G
Sbjct: 789  IYKTKVYCL-DEKESRGRGKAKREIAKLFGFAPGGLIKGEWRQTLDEDGLPHIGVRVTEG 847

Query: 795  EPYCSI----YDKTTNSWRTNSR-------KGSESVFVDYVAVDMKNSKNLP-QKANIRF 842
                +     +D  +NS+    R       K +E  ++D V +    +   P Q  +I++
Sbjct: 848  SIVAAWHTVRFDAVSNSYINIDRQTHFFKYKDTEEGYIDSVRILGSETGGDPCQAISIKY 907

Query: 843  RHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLL 902
            R  R P+IGDKFSSRHGQKGVCSQLWP IDMPFS  +G++PD+IINPHAFPSRMTI M +
Sbjct: 908  RIPRKPVIGDKFSSRHGQKGVCSQLWPAIDMPFS-ESGIQPDVIINPHAFPSRMTIGMFV 966

Query: 903  ESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVL 962
            ES+A K G+LHG   D+TPF  S + T GD             GE LR  G+N+HG E +
Sbjct: 967  ESLAGKSGALHGLAQDSTPFRFSEEHTAGDF-----------FGEQLRKAGYNFHGNEPM 1015

Query: 963  YSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGE 1022
            YSG+ G E   +I++G VYYQRLRHMV+DKFQVR+TG ++ +T QP+KGR +GGGIR GE
Sbjct: 1016 YSGITGREFAADIYLGVVYYQRLRHMVNDKFQVRTTGPVNALTGQPVKGRAKGGGIRVGE 1075

Query: 1023 MERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLT-----ATFIHPQKR------- 1070
            MERD+LLAHGAA+LL DRL  CSD   + +C  CGS L+     +  + P K        
Sbjct: 1076 MERDALLAHGAAFLLQDRLMNCSDITRSWICRTCGSFLSTQVAVSKHVAPIKNPAMAAAA 1135

Query: 1071 -----------AIREIGGLPPARAPKKVTCHACQTSKGME-------------------- 1099
                       A+  +GG         V C  C      +                    
Sbjct: 1136 KSSSGLVKPGGAVSALGG-----TSGIVRCRRCAREAVFDDPRAEVWEDGEGRRFVGGDD 1190

Query: 1100 --TVAMPYVFRYLAAELAAMNIKITLQLGD 1127
               VA+P V +YL  ELAAM +K+T ++ +
Sbjct: 1191 TTVVAVPGVLKYLDVELAAMGVKMTFKVNN 1220


>gi|340712517|ref|XP_003394805.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like [Bombus
            terrestris]
          Length = 1122

 Score =  792 bits (2045), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/1164 (39%), Positives = 667/1164 (57%), Gaps = 115/1164 (9%)

Query: 12   LRELVRHHIESFDYMLDEGLSEMF------------------------------------ 35
            L+ L   HI+SF+YML++GLSE                                      
Sbjct: 25   LQSLGAPHIDSFNYMLEDGLSEAVRDNPFVYIYLPNEDKIALWIDDVSIHQPNIPSGAIG 84

Query: 36   --------DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQG 87
                      CRQ   +Y GK+   + +  ++       ER + G+ P+M+K+ RCHL  
Sbjct: 85   VKNHKIYPTECRQRGCTYKGKITVKLGWS-INNNVQETLER-DLGEIPIMIKSNRCHLNK 142

Query: 88   ADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAV 147
               + LV+  E   E GGYFI+ GLER+ R ++L ++NYP+++ RSS++ R   ++D  +
Sbjct: 143  MSPKDLVAHGEHEQEWGGYFIIKGLERIIRMLLLTRRNYPIAIRRSSWKARGIQFSDLGL 202

Query: 148  VIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTC 207
            ++R VR D ++    L+Y+ +GS +L F  +   Y +P+ ++LK LVD +D+ I+N LT 
Sbjct: 203  LLRSVRDDNTTANNTLHYVTDGSAKLMFSYRKVLYYVPLILMLKCLVDVSDIFIYNALTA 262

Query: 208  -CYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSES 266
             C D+ Y K  G + +         +L  V +  L +  +C  +IG  F+  +  L  ++
Sbjct: 263  GCEDDLYYK--GCILN---------MLRAVHEQGLNSHEECKAYIGRMFRIKLFELPHDA 311

Query: 267  Y-YAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPG 325
                V + +I+  I +HL+D  DKF LL+FM +KLF+L ++    +  D++  QE LL G
Sbjct: 312  TDIDVCDFIIKHCIAIHLHDPLDKFYLLVFMTKKLFALANNKCAVEGADAVMMQECLLGG 371

Query: 326  HLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
            HL    LKEKL  WL   K  I     + G ++   N+  +  VM+   S  + + +E  
Sbjct: 372  HLYLQVLKEKLYSWLTGLKMGILKRARSAGNRYTL-NVQEMLNVMKHGSS--LESQMENF 428

Query: 386  LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
            L TG L + TGL L Q  G T+ AE +N +R++S FRA+HRG+ F  +RTT  R+LLP++
Sbjct: 429  LSTGNLRSPTGLGLMQSTGLTIVAENINRMRYMSHFRAIHRGSFFQEMRTTEARQLLPDA 488

Query: 446  WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
            WGF+CPVHTPDG PCGLLNH+T  C +  + +         K++ ++  +L+ +GMIP  
Sbjct: 489  WGFICPVHTPDGAPCGLLNHLTMNCIITKHTNP--------KLKANVPIILMDLGMIPLS 540

Query: 506  PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL-S 564
               +         V+LDG+++G+I  + I +V   LR LK+    V P  +E+  VP  +
Sbjct: 541  ---IADNWKKSYIVILDGKLIGLIDDNIISRVTDKLRLLKIKGQEV-PCTMEIALVPKKN 596

Query: 565  LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEI-RCPDGGDGGRRN 623
            +   YPGLYLFT+P + +RPV N++     ++ +E IG FEQ+++ I   P+    G   
Sbjct: 597  VPAQYPGLYLFTNPARMMRPVMNLA-----AKKVEYIGTFEQIYLNICVTPEEAYEGL-- 649

Query: 624  AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
                +H+E+  T  LS +A+L P  D NQSPRNMYQCQM KQTMG      + +++ KLY
Sbjct: 650  ---TSHQELSKTAFLSNLASLIPMPDCNQSPRNMYQCQMGKQTMGTPCHTWQLQSETKLY 706

Query: 684  HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
             LQTP TP+ R   Y +  +D++  GTNAIVAV++YTGYDMEDAMI+NK++ DRG  HG 
Sbjct: 707  RLQTPATPLFRPVHYDEIDLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAHDRGFAHGM 766

Query: 744  IYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDK 803
            IY++E +DL D        +  F RN D   L   +D DGLP +G MI  G+ Y   YD 
Sbjct: 767  IYKSEFVDLKDQ-------KSYFARNPDKSDLAEKLDVDGLPILGTMISEGDVYYCYYDA 819

Query: 804  TTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGV 863
              +++ T    G E  ++D V +      ++P++A I FR  RN  +GDKF+SR GQKG+
Sbjct: 820  DQSTYVTGKYHGKEDAYIDTVKLCGTLHNHIPRRACITFRIPRNANVGDKFASRAGQKGI 879

Query: 864  CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFA 923
            CSQ WP  D+PF+  TG+ PD++ NPH FPSRMTIAM++E +A K  ++HG   DAT F 
Sbjct: 880  CSQKWPSEDLPFTE-TGLIPDIVFNPHGFPSRMTIAMMIEVMAGKSAAIHGLVHDATSFR 938

Query: 924  NSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQ 983
                        +E ++ V+  G++L   G+NY+G E +YSG+ G E+T +IF G V+YQ
Sbjct: 939  -----------FNEDETAVEYFGKLLERGGYNYYGTERMYSGIDGREMTADIFFGIVHYQ 987

Query: 984  RLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHT 1043
            RLRHMVSDK+QVRSTG +D +TRQPIKGR+RGGG+RFGEMERDSLL+HG ++LL DRL  
Sbjct: 988  RLRHMVSDKWQVRSTGPIDVLTRQPIKGRRRGGGVRFGEMERDSLLSHGCSFLLQDRLFH 1047

Query: 1044 CSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAM 1103
            CSD     VC  CG++L      P         GL       K  C  C   + +  V +
Sbjct: 1048 CSDKTTTLVCKKCGTLLG-----PVMEMSLSASGL-----NDKTKCRLCGNDESVREVDI 1097

Query: 1104 PYVFRYLAAELAAMNIKITLQLGD 1127
            PY+FRYL  +L + NI + L   +
Sbjct: 1098 PYIFRYLVTQLTSCNINVKLSFAE 1121


>gi|328792060|ref|XP_001120416.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 [Apis
            mellifera]
          Length = 1122

 Score =  791 bits (2044), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/1167 (39%), Positives = 675/1167 (57%), Gaps = 121/1167 (10%)

Query: 12   LRELVRHHIESFDYMLDEGLSE-------MFDH--------------------------- 37
            L+ L   HI+SF+YML++GL +       ++ H                           
Sbjct: 25   LQRLGAPHIDSFNYMLEDGLCKAVKDNPHVYIHLPNKDKVALWIDDVSIDQPSVPSGIIG 84

Query: 38   ----------CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQG 87
                      CRQ   SY GK+   + +   D     +    + G+ P+M+K+ RCHL  
Sbjct: 85   IKTHKIYPTECRQRGCSYKGKITVKLGWSINDKLQETLAR--DLGEIPIMIKSNRCHLNK 142

Query: 88   ADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAV 147
             + + L+   E   E GGYF++ GLER+ R +++ ++NYP+++ RS ++ R   ++D  +
Sbjct: 143  MNPKDLILHGEHEQEWGGYFVIKGLERIIRMLLMTRRNYPIAIKRSGWKTRGIQFSDLGL 202

Query: 148  VIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLT- 206
             +R VR D ++    L+Y+ +GS +L F  +   Y +P+ ++LK LVD +D+ I+N LT 
Sbjct: 203  FLRSVRDDNTTANNTLHYVTDGSAKLMFSHKKVLYYVPLILILKCLVDVSDIFIYNVLTA 262

Query: 207  -CCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSE 265
             C YD  YK   G + +         +L  V +  L    +C  +IG+ F+     L  +
Sbjct: 263  GCEYDLYYK---GCILN---------MLRAVHEQGLNNHEECKAYIGKMFRIKFFELPED 310

Query: 266  SY-YAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLP 324
            +    V + +I+  I +HLN+  DKF LL FM +KLF+L ++    +  DS+  QE LL 
Sbjct: 311  ATDIDVCDFIIKHCIAIHLNNPLDKFYLLAFMTKKLFALANNKCAVEGADSVMMQECLLG 370

Query: 325  GHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIET 384
            GHL    LKEKL  WL   K  I     + G ++   N+  +  +M+   S  + + +E 
Sbjct: 371  GHLYLQVLKEKLYSWLTNLKMSILKRARSAGNRYTL-NVQEMLNIMKYGNS--LESQMEN 427

Query: 385  MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPE 444
             L TG L + TGL L Q  G T+ AE +N +R++S FRA+HRG+ F  +RTT  R+LLP+
Sbjct: 428  FLSTGNLRSSTGLGLMQNTGLTIVAENINRMRYMSHFRAIHRGSFFQEMRTTEARQLLPD 487

Query: 445  SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP- 503
            +WGF+CPVHTPDG PCGLLNH+T  C +  + D+        K++ +I  +L+ +GMIP 
Sbjct: 488  AWGFICPVHTPDGAPCGLLNHLTMNCIITKHPDA--------KLKANIPIILMDLGMIPL 539

Query: 504  SLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL 563
            S+    K+       V+LDG+++G+I  + I +V   LR LK+    V P  +E+  VP 
Sbjct: 540  SIADNWKNS----YIVMLDGKLIGLIDDNIIARVTDKLRLLKIKGQEV-PYMMEIALVPK 594

Query: 564  -SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC--PDGGDGG 620
             ++   YPGLYLFTSP + +RP+ N++     ++NIE IG FEQ++++I C  P+    G
Sbjct: 595  KTVPAQYPGLYLFTSPARMMRPIMNLA-----AKNIEYIGTFEQIYLDI-CVTPEEAYEG 648

Query: 621  RRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQ 680
                   +H+E+  T  LS +A+L P  D+NQSPRNMYQCQM+KQTMG      + +++ 
Sbjct: 649  L-----TSHQELSKTAFLSNLASLIPMPDYNQSPRNMYQCQMSKQTMGTPCHTWQLQSET 703

Query: 681  KLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMC 740
            KLY LQTP TP+ R   + K  +D++  GTNAIVAV++YTGYDMEDAMI+NK++ DRG  
Sbjct: 704  KLYRLQTPATPLFRPVHHDKINLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAYDRGFA 763

Query: 741  HGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSI 800
            HG IY++E IDL D        +  F RN D   L   +D DGLP  G +I  G+ Y   
Sbjct: 764  HGMIYKSEFIDLKDQ-------KSYFARNPDKSELVEKLDIDGLPLPGTIISEGDVYYCY 816

Query: 801  YDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQ 860
            YD   +++ T    G E  +VD V +      ++P++A I FR  RNP +GDKF+SR GQ
Sbjct: 817  YDADQSTYITGKYHGKEDAYVDTVKLCGTLHNHIPRRACITFRIPRNPSVGDKFASRAGQ 876

Query: 861  KGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDAT 920
            KG+CSQ W   D+PF+  TG+ PD++ NPH FPSRMTIAM++E +A K  ++HG   DAT
Sbjct: 877  KGICSQKWSAEDLPFTE-TGLIPDIVFNPHGFPSRMTIAMMIELMAGKSAAIHGLVHDAT 935

Query: 921  PFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPV 980
             F             +E ++ V+  G++L   G+NY+G E +YSG+ G E+T +IF G V
Sbjct: 936  SFR-----------FNEDETAVEYFGKLLERGGYNYYGTERMYSGIDGREMTADIFFGVV 984

Query: 981  YYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDR 1040
            +YQRLRHMVSDK+QVRSTG +D +TRQPIKGR+RGGG+RFGEMERDSL++HG ++LL DR
Sbjct: 985  HYQRLRHMVSDKWQVRSTGPIDVLTRQPIKGRRRGGGVRFGEMERDSLISHGCSFLLQDR 1044

Query: 1041 LHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMET 1100
            L  CSD     VC  CG++L           I E+  L  +    K+ C  C  ++ +  
Sbjct: 1045 LFHCSDKTTTLVCQKCGTLLG---------PIMEM-ALNASGLGNKLRCRLCGDNESVRE 1094

Query: 1101 VAMPYVFRYLAAELAAMNIKITLQLGD 1127
            + +PY+FRYL  +L + NI + L   +
Sbjct: 1095 IDIPYIFRYLVTQLTSCNINVKLSFAE 1121


>gi|67473159|ref|XP_652347.1| DNA-directed RNA polymerase subunit [Entamoeba histolytica HM-1:IMSS]
 gi|56469186|gb|EAL46961.1| DNA-directed RNA polymerase subunit, putative [Entamoeba histolytica
            HM-1:IMSS]
 gi|449709519|gb|EMD48770.1| DNA-directed RNA polymerase I subunit RPA2, putative [Entamoeba
            histolytica KU27]
          Length = 1106

 Score =  791 bits (2042), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/1162 (38%), Positives = 652/1162 (56%), Gaps = 119/1162 (10%)

Query: 12   LRELVRHHIESFDYMLDEGLSEMFDH---------------------------------- 37
            L+EL R H ESF+Y L++G  ++  +                                  
Sbjct: 11   LKELTRAHTESFNYFLEKGKEDILKYMKKYKIIKKDSTELMELSCTGISIEKPTYNGLPL 70

Query: 38   ----CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHL--QGADSQ 91
                CR A ++Y+G++   +  +  D+   +     + G+ P+M+ + +C +  +    +
Sbjct: 71   FPYMCRSAALTYSGRIKLTITIKENDSNKTI---EVDGGEIPIMVGSSKCWIGSEYTTPE 127

Query: 92   KLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC 151
            + ++++E+  E+GGYFI+NG+ER  R ++  K N+P+++ R S+ ++   +T   ++IRC
Sbjct: 128  ERINIREDPHEIGGYFIINGIERYLRMIVYAKPNHPLAVTRPSWTNKGAHFTKYGIIIRC 187

Query: 152  VRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDE 211
            +R D +++T  L++L NG V L F  + +E+ +PV ++L+     +D EIF  +T    E
Sbjct: 188  MRDDITTLTNTLHFLDNGKVSLRFIFKKQEFFIPVVLLLRVYGGMSDREIFQLITMNNYE 247

Query: 212  KYKKEKGAV-------GSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQS 264
                   A        GSPL                L +  Q L +IG  F+ ++DG + 
Sbjct: 248  NSNLVNAAEMLVRRENGSPLNG--------------LNSPEQVLTYIGSKFRLIMDGTEG 293

Query: 265  ESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLP 324
             +   + + V+ ++  VHL+   +K +LLIFMLQKLF+LV      +  D+  +Q +LLP
Sbjct: 294  VNDTELGKRVLDEFCLVHLSSYAEKSDLLIFMLQKLFALVHGEIDEEGVDTPMSQGVLLP 353

Query: 325  GHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIET 384
            GHL    +KE++++ L K +  I  ++++  K         +++ +  + +K  GT I++
Sbjct: 354  GHLYQTVIKEEIQNVLSKARLFILKDLKDVKKGSKVTEKIYLQRAL-SSAAKSFGTRIKS 412

Query: 385  MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPE 444
             + TG   T T  DLQQ  G+++ AERLN  RF S F +VHRGA +  ++TTS+RKL+PE
Sbjct: 413  FISTGNFETNTTTDLQQTNGFSITAERLNHSRFTSHFVSVHRGAFYTTMKTTSIRKLVPE 472

Query: 445  SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
            +WGF+CPVHTPDG PCGLLNH   +CR+        N R        I+ +   +GM+ +
Sbjct: 473  AWGFMCPVHTPDGAPCGLLNHFAVSCRI--------NARKHPLPDQQIIDLCTELGMVST 524

Query: 505  -LPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL 563
               KL    P   + VLL+G+V+G +   EI   V  LR  +      IP+ LE+GY   
Sbjct: 525  QFMKL----PSIYIPVLLNGKVIGKVSPHEINSFVQQLRYERAVYNPKIPNTLEIGYCDG 580

Query: 564  SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRN 623
             L   Y  LYL   P + +RPV +       + NI  IGP+EQVF++I+C D  +G    
Sbjct: 581  YLQDGYHALYLNDLPGQMIRPVIH-----RATGNIVNIGPYEQVFLDIKCGDSIEGMNN- 634

Query: 624  AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
               A +EEI     LS++A LTP+   NQSPRNMYQCQMAKQTMG    + K+R+D KL 
Sbjct: 635  ---AEYEEISALNSLSLLATLTPFCHMNQSPRNMYQCQMAKQTMGIPALSNKYRSDTKLL 691

Query: 684  HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
             L  PQ  I +      +G +EYPTG NA+VAV++YTGYDMEDA+I+ KS+++RG  HG 
Sbjct: 692  WLHYPQRSICQCALMEPFGFNEYPTGANAVVAVISYTGYDMEDALIIKKSAIERGFGHGS 751

Query: 744  IYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDK 803
             Y+   +D   +G K    +         +     +D DGLP  G++      Y  I DK
Sbjct: 752  QYKAYKVDFEKEGEK---NEMFSGTTSSGEVFDEHLDDDGLPRPGEVFENSPIYSHI-DK 807

Query: 804  TTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGV 863
             T   +     G          V   N  +  QKA +R R+ R P+IGDKFSSRHGQKG 
Sbjct: 808  ITGKIKGKVLMGERGYIESVRIVGGDNIDSGLQKAVVRVRYNRTPVIGDKFSSRHGQKGT 867

Query: 864  CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFA 923
             S  + + DMPF+  +GM PD+IINPHAFPSRMTIAML+ES+A+K G+L G++ DATPF 
Sbjct: 868  LSVHYQEKDMPFTE-SGMTPDIIINPHAFPSRMTIAMLVESMASKVGALKGEYQDATPFK 926

Query: 924  NSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQ 983
                        DE  S VD  G+ L   G+NY+G E LYSG+YG EL  +I+IG VYYQ
Sbjct: 927  -----------FDEENSAVDYFGKQLLKYGYNYYGSEPLYSGIYGNELQSDIYIGIVYYQ 975

Query: 984  RLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHT 1043
            RL H V DK+QVRSTG +  +T QPIKGRKRGGGIRFGEMERDSL+AHG A L+HDRL  
Sbjct: 976  RLVHQVKDKYQVRSTGPISIVTHQPIKGRKRGGGIRFGEMERDSLVAHGTAMLVHDRLFE 1035

Query: 1044 CSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAM 1103
            CSD     VC+ CGS+ T       KR          ++   K+ C +C  +  ++ + +
Sbjct: 1036 CSDKCYHYVCTKCGSICTI------KR----------SKEYDKMVCQSCGPTSIVKKIQI 1079

Query: 1104 PYVFRYLAAELAAMNIKITLQL 1125
            PYVFRYLAAEL+AMN+++ L++
Sbjct: 1080 PYVFRYLAAELSAMNVRLNLRV 1101


>gi|358379516|gb|EHK17196.1| hypothetical protein TRIVIDRAFT_183490 [Trichoderma virens Gv29-8]
          Length = 1198

 Score =  791 bits (2042), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 470/1161 (40%), Positives = 649/1161 (55%), Gaps = 174/1161 (14%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR+   +Y GKL A   F+Y   G  VV      GQ P+M+K+ RCHL+      LVS K
Sbjct: 118  CRERHATYRGKLSA--TFEYSINGGDVVEFTRELGQVPIMIKSNRCHLENNSPALLVSRK 175

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EE+ E+GGYFI+NG E++ R + + K+N+PM++ R SF +R  GYT   +++R VR D++
Sbjct: 176  EESEELGGYFIVNGNEKIIRLLQVNKRNFPMAINRPSFTNRGAGYTTYGIILRSVRPDET 235

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            S T  L+YL +G+V   F  +  EYL+PV ++LKALV+TND EIF  L      K     
Sbjct: 236  SQTNVLHYLKDGNVTFRFSWRKNEYLIPVIMILKALVETNDREIFEGLIGPMGSK----- 290

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
             A  +  +++RV+++L   +   L ++ +   ++G+ F+ V+   ++ S Y V    +R 
Sbjct: 291  -AAQNTFLTDRVELLLRTYKAYRLYSKSETRAYLGQKFRVVLGVPETMSDYEVGTEFLRK 349

Query: 278  YIFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITI 330
             + VHL + +       DKF++++FM++KL++L       DNPD++QNQEILL G L + 
Sbjct: 350  IVCVHLGNVDVTEKQDLDKFHMVLFMIRKLYALAAGECAVDNPDAIQNQEILLGGFLYSQ 409

Query: 331  YLKEKLEDWLRKG-KKLIQDEIENNGKKFDFFNLANIKKVME----KNPSKQIGTSIETM 385
             LKE+L+++L    +  I+D +  +      F     +K       +  ++ I   +E  
Sbjct: 410  ILKERLDEFLSVSVRTAIRDYLRRHPAVS--FTSEEFRKEFPGGIFRKSNENIANGLEYF 467

Query: 386  LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
            L TG L + +GLDLQQ AG+TV AE+LNFLRFIS FR VHRGA FA L+TT+VRKLLPES
Sbjct: 468  LSTGNLVSASGLDLQQTAGFTVVAEKLNFLRFISHFRMVHRGAFFAQLKTTAVRKLLPES 527

Query: 446  WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
            WGF+CPVHTPDG PCGLLNHMT  C++ + Y    NI                V  + ++
Sbjct: 528  WGFMCPVHTPDGSPCGLLNHMTHKCKIMTDYVDVSNIPAL-------------VAELGAV 574

Query: 506  PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
                 S   +V+ V+LDG+++G     E  ++   LR  KV  +  +P  LEVGYVP S 
Sbjct: 575  ETSSASTDESVV-VMLDGKIIGWSTPKESLRIGDCLRYWKVEGSHNVPLQLEVGYVPPSN 633

Query: 566  GGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNA 624
            GG+YPGLYL ++P + VRPV+ + L  E+      +GP EQ +M I   P   + G    
Sbjct: 634  GGSYPGLYLTSTPSRMVRPVKYLPLQKED-----YVGPHEQPYMSIAVVPQEIESGV--- 685

Query: 625  FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
              +TH E  PT MLS++AN+TP+SD NQSPRNMYQCQM KQTMG    A++ R D K Y 
Sbjct: 686  --STHVEFDPTNMLSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPGTAIRHRTDNKSYR 743

Query: 685  LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI 744
            +QT QTPIVR   +  YG D +P G NA+VAV++YTGYDM+DAMI+NKS+ +RG  HG +
Sbjct: 744  IQTGQTPIVRAPLHNTYGFDNFPNGMNAVVAVISYTGYDMDDAMIINKSAHERGFGHGTV 803

Query: 745  YQTETIDLSDDGNKVDRGQKLFRRNKDAKSL--------HS--------VIDSDGLPYVG 788
            Y+T+ I L DD            R + AKS+        HS        ++D DGLP+VG
Sbjct: 804  YKTKKITLKDDS-----------RTRAAKSVVKMFGFAPHSYVSAAYQGMLDDDGLPHVG 852

Query: 789  QMIHPGEPYCSIYDKTTNSWRTN-----------SRKGSESVFVDYVAVDMKNSKNLP-Q 836
            +M+   +  C+ +   T  +  N             K SE  F++ V +    S + P Q
Sbjct: 853  RMVKEDDVLCA-WHTVTPDYNGNLVNLDGITHYEKYKDSEIGFIEEVRLIGAESGSEPLQ 911

Query: 837  KANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRM 896
              +I+ R  R+P+IGDKFSSRHGQKGV SQ WP                           
Sbjct: 912  TISIKIRIPRSPVIGDKFSSRHGQKGVLSQKWP--------------------------- 944

Query: 897  TIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNY 956
                   S+A K G+LHG   D+TPF             DE  +  D  G  L   GFNY
Sbjct: 945  ------MSLAGKAGALHGLAQDSTPFR-----------FDEENTAADYFGHQLMKAGFNY 987

Query: 957  HGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGG 1016
            HG E +YSG+ G EL  +I+IG VYYQRLRHMV+DK+QVR+TG +   T QPIKGRKRGG
Sbjct: 988  HGNEPMYSGITGEELGADIYIGVVYYQRLRHMVNDKYQVRTTGPVVPTTGQPIKGRKRGG 1047

Query: 1017 GIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVL----TATFIHPQKRAI 1072
            GIR GEMERD+LLAHG A+LL DRL  CSDY  + +C  CGS L    T +   P K+  
Sbjct: 1048 GIRVGEMERDALLAHGTAFLLQDRLLNCSDYTRSWICRRCGSFLSVQPTVSQFAPGKK-- 1105

Query: 1073 REIGGLPPARAPKKVTCHACQT----SKGME------------------------TVAMP 1104
                     +AP  V C  C      S+G++                         V +P
Sbjct: 1106 ---------KAPSMVRCRNCAVRLDDSEGIDLTEIQGEIWEDGQGNCWVGGDQTTQVVVP 1156

Query: 1105 YVFRYLAAELAAMNIKITLQL 1125
               ++L  ELAAM +K+  ++
Sbjct: 1157 GALKFLDVELAAMGVKLKYRI 1177


>gi|407044307|gb|EKE42503.1| DNA-directed RNA polymerase, beta subunit domain containing protein
            [Entamoeba nuttalli P19]
          Length = 1106

 Score =  790 bits (2041), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/1162 (38%), Positives = 652/1162 (56%), Gaps = 119/1162 (10%)

Query: 12   LRELVRHHIESFDYMLDEGLSEMFDH---------------------------------- 37
            L+EL R H ESF+Y L++G  ++  +                                  
Sbjct: 11   LKELTRAHTESFNYFLEKGKEDILKYMKKYKIIKKDSTELMELSCTGISIEKPTYNGLPL 70

Query: 38   ----CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHL--QGADSQ 91
                CR A ++Y+G++   +  +  D+   +     + G+ P+M+ + +C +  +    +
Sbjct: 71   FPYMCRSAALTYSGRIKLTITIKENDSNKTI---EVDGGEIPIMVGSSKCWIGSEYTTPE 127

Query: 92   KLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC 151
            + ++++E+  E+GGYFI+NG+ER  R ++  K N+P+++ R S+ ++   +T   ++IRC
Sbjct: 128  ERINIREDPHEIGGYFIINGIERYLRMIVYAKPNHPLAVTRPSWTNKGAHFTKYGIIIRC 187

Query: 152  VRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDE 211
            +R D +++T  L++L NG V L F  + +E+ +PV ++L+     +D EIF  +T    E
Sbjct: 188  MRDDITTLTNTLHFLDNGKVSLRFIFKKQEFFIPVVLLLRVYGGMSDREIFQLITMNNYE 247

Query: 212  KYKKEKGAV-------GSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQS 264
                   A        GSPL                L +  Q L +IG  F+ ++DG + 
Sbjct: 248  NSNLVNAAEMLVRRENGSPLNG--------------LNSPEQVLTYIGSKFRLIMDGTEG 293

Query: 265  ESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLP 324
             +   + + V+ ++  VHL+   +K +LLIFMLQKLF+LV      +  D+  +Q +LLP
Sbjct: 294  VNDTELGKRVLDEFCLVHLSSYAEKSDLLIFMLQKLFALVHGEIDEEGVDTPMSQGVLLP 353

Query: 325  GHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIET 384
            GHL    +KE++++ L K K  I  ++++  K         +++ +  + +K  GT I++
Sbjct: 354  GHLYQTVIKEEIQNVLSKAKLFILKDLKDVKKGSKVTEKIYLQRAL-SSAAKSFGTRIKS 412

Query: 385  MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPE 444
             + TG   T T  DLQQ  G+++ AERLN  RF S F +VHRGA +  ++TTS+RKL+PE
Sbjct: 413  FISTGNFETNTTTDLQQTNGFSITAERLNHSRFTSHFVSVHRGAFYTTMKTTSIRKLVPE 472

Query: 445  SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
            +WGF+CPVHTPDG PCGLLNH   +CR+        N R        I+ +   +GM+ +
Sbjct: 473  AWGFMCPVHTPDGAPCGLLNHFAVSCRI--------NARKHPLPDQQIIDLCTELGMVST 524

Query: 505  -LPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL 563
               KL    P   + VLL+G+V+G +   EI   V  LR  +      IP+ LE+GY   
Sbjct: 525  QFMKL----PSIYIPVLLNGKVIGKVSPHEINSFVQQLRYERAVYNPKIPNTLEIGYCDG 580

Query: 564  SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRN 623
             L   Y  LYL   P + +RPV +       + NI  IGP+EQVF++I+C D  +G    
Sbjct: 581  YLQDGYHALYLNDLPGQMIRPVIH-----RATGNIVNIGPYEQVFLDIKCGDSIEGMNN- 634

Query: 624  AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
               A +EEI     LS++A LTP+   NQSPRNMYQCQMAKQTMG    + K+R+D KL 
Sbjct: 635  ---AEYEEISALNSLSLLATLTPFCHMNQSPRNMYQCQMAKQTMGIPALSNKYRSDTKLL 691

Query: 684  HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
             L  PQ  I +      +G +EYPTG NA+VAV++YTGYDMEDA+I+ KS+++RG  HG 
Sbjct: 692  WLHYPQRSICQCALMEPFGFNEYPTGANAVVAVISYTGYDMEDALIIKKSAIERGFGHGS 751

Query: 744  IYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDK 803
             Y+   +D   +G K    +         +     +D DGLP  G++      Y  I DK
Sbjct: 752  QYKAYKVDFEKEGEK---NEMFSGTTSSGEVFDEHLDDDGLPRPGEVFENSPIYSHI-DK 807

Query: 804  TTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGV 863
             T   +     G          V   N  +  QKA +R R+ R P+IGDKFSSRHGQKG 
Sbjct: 808  ITGKIKGKVLMGERGYIESVRIVGGDNIDSGLQKAVVRVRYNRTPVIGDKFSSRHGQKGT 867

Query: 864  CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFA 923
             S  + + DMPF+  +GM PD+IINPHAFPSRMTIAML+ES+A+K G+L G++ DATPF 
Sbjct: 868  LSVHYQEKDMPFTE-SGMTPDIIINPHAFPSRMTIAMLVESMASKVGALKGEYQDATPFK 926

Query: 924  NSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQ 983
                        DE  + VD  G+ L   G+NY+G E LYSG+YG EL  +I+IG VYYQ
Sbjct: 927  -----------FDEENNAVDYFGKQLLKYGYNYYGSEPLYSGIYGNELQSDIYIGIVYYQ 975

Query: 984  RLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHT 1043
            RL H V DK+QVRSTG +  +T QPIKGRKRGGGIRFGEMERDSL+AHG A L+HDRL  
Sbjct: 976  RLVHQVKDKYQVRSTGPISIVTHQPIKGRKRGGGIRFGEMERDSLVAHGTAMLVHDRLFE 1035

Query: 1044 CSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAM 1103
            CSD     VC+ CGS+ T       KR          ++   K+ C +C  +  ++ + +
Sbjct: 1036 CSDKCYHYVCTKCGSICTI------KR----------SKEYDKMVCQSCGPTSIVKKIQI 1079

Query: 1104 PYVFRYLAAELAAMNIKITLQL 1125
            PYVFRYLAAEL+AMN+++ L++
Sbjct: 1080 PYVFRYLAAELSAMNVRLNLRV 1101


>gi|383852408|ref|XP_003701720.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like [Megachile
            rotundata]
          Length = 1122

 Score =  790 bits (2040), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/1162 (39%), Positives = 676/1162 (58%), Gaps = 115/1162 (9%)

Query: 12   LRELVRHHIESFDYMLDEGLSE-------MFDH--------------------------- 37
            L+ L   HI+SF+YML++GLS+       ++ H                           
Sbjct: 25   LQSLGTPHIDSFNYMLEDGLSQAVQDNPLVYIHLPNENKVALWIDDVSIHQPIVPSGTIG 84

Query: 38   ----------CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQG 87
                      CRQ   +Y GK+   + +  ++       ER + G+ P+M+K+ RCHL  
Sbjct: 85   VKNHKIYPTECRQRGCTYKGKITVKLGWS-VNGKLQETLER-DLGEIPIMIKSNRCHLHK 142

Query: 88   ADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAV 147
               ++L++  E   E GGYFI+ GLER+ R +++ ++NYP+++ RS ++ R   ++D  +
Sbjct: 143  MSPKELIAHGEHEQEWGGYFIIKGLERIIRMLLMTRRNYPIAIKRSGWKARGVQFSDLGL 202

Query: 148  VIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTC 207
            ++R VR D ++    L+Y+++GS +L F  +   Y +P+ ++LK L+D +D+ I+N LT 
Sbjct: 203  LLRSVRDDNTASNNTLHYVIDGSAKLMFTHRKVLYYVPLILILKCLIDASDIFIYNALTA 262

Query: 208  -CYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGL-QSE 265
             C D+ Y K  G + +         +L  + + +L +   C  +IG  F+     L Q  
Sbjct: 263  GCEDDPYYK--GCILN---------MLRAIHEQNLHSHEDCKTYIGRMFRIKFFELPQDA 311

Query: 266  SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPG 325
            +   V + +I+  I +HL++  DKF LL+FM +KLF+L ++    +  D++  QE LL G
Sbjct: 312  TDTDVCDFIIKHCIAIHLDNPMDKFYLLVFMTKKLFALANNKCAVEGADAVMMQECLLGG 371

Query: 326  HLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
            HL    LKEKL  WL   K  I     + G ++   N+  +  VM+      + + +E  
Sbjct: 372  HLYLQVLKEKLYSWLNSLKMNILKRARSAGNRYTL-NVQEMLNVMKH--GNFLDSQMENF 428

Query: 386  LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
            L TG + + TGL L Q +G T+ AE +N +R++S FRA+HRG+ F  +RTT  R+LLP++
Sbjct: 429  LSTGNIKSSTGLGLMQSSGLTIVAENINRMRYMSHFRAIHRGSFFQEMRTTEARQLLPDA 488

Query: 446  WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
            WGF+CPVHTPDG PCGLLNH+T  C +  + D         K++ +I  +L+ +GMIP  
Sbjct: 489  WGFICPVHTPDGAPCGLLNHLTMNCIITKHPDP--------KLKANIPIILMDLGMIPL- 539

Query: 506  PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL-S 564
              +V +   + + V+LDG+++G+I ++ I +V   LR LK+    V P  +E+  VP  +
Sbjct: 540  -SIVDNWQNSYV-VMLDGKLIGLIDNNIISRVTDKLRLLKIKGEEV-PRIMEIVLVPKKN 596

Query: 565  LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEI-RCPDGGDGGRRN 623
            +   YPGLYLFT+  + +RPV N++     S+ IE IG FEQV++ I   P+    G   
Sbjct: 597  VPAQYPGLYLFTNAARMMRPVMNLA-----SKKIEYIGTFEQVYLNICVTPEEAYEGL-- 649

Query: 624  AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
                TH+E+  T  LS +A+L P  D NQSPRNMYQCQM KQTMG      + +++ KLY
Sbjct: 650  ---TTHQELSKTAFLSNLASLIPMPDCNQSPRNMYQCQMGKQTMGTPCHTWQLQSETKLY 706

Query: 684  HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
             LQTP TP  R   Y K  +D++  GTNAIVAV++YTGYDMEDAMI+NK++ DRG  HG 
Sbjct: 707  RLQTPATPFFRPVHYDKINLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAYDRGFAHGM 766

Query: 744  IYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDK 803
            IY++E +DL D        +  F RN D   L + ID DGLP  G +I  G+ Y   YD 
Sbjct: 767  IYKSEFVDLKDQ-------RSYFARNPDKPELAAKIDVDGLPVPGTIIKEGDIYYCYYDA 819

Query: 804  TTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGV 863
              +++ T    G E   +D V +      ++P++A I FR +RNP +GDKF+SR GQKG+
Sbjct: 820  DQSTYVTGKYHGKEDAHIDNVKLCGTLHSHIPRRACITFRISRNPSVGDKFASRAGQKGI 879

Query: 864  CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFA 923
            CSQ WP  D+PF+  TG+ PD++ NPH FPSRMTIAM++E +A K  ++HG   DAT F 
Sbjct: 880  CSQKWPAEDLPFTE-TGLIPDIVFNPHGFPSRMTIAMMIEVMAGKSAAIHGLVHDATSFR 938

Query: 924  NSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQ 983
                        +E ++ V+  G++L   G+NY+G E LYSG+ G E+T +IF G V+YQ
Sbjct: 939  -----------FNEDETAVEYFGKLLERGGYNYYGTERLYSGIDGREMTADIFFGIVHYQ 987

Query: 984  RLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHT 1043
            RLRHMVSDK+QVRSTG +D +TRQPIKGR+RGGG+RFGEMERDSL++HG A+LL DRL  
Sbjct: 988  RLRHMVSDKWQVRSTGPIDVLTRQPIKGRRRGGGVRFGEMERDSLISHGCAFLLQDRLFH 1047

Query: 1044 CSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAM 1103
            CSD     +C  CG++L           + EI  +  +    K  C  C   + ++ V +
Sbjct: 1048 CSDKTTTLICQKCGTLLG---------PVMEI-DINKSDLIDKTRCRLCSDDEHVKEVEI 1097

Query: 1104 PYVFRYLAAELAAMNIKITLQL 1125
            PY+FRYL  +L + NI + L  
Sbjct: 1098 PYIFRYLVTQLTSCNINVKLSF 1119


>gi|345484997|ref|XP_001606574.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 [Nasonia
            vitripennis]
          Length = 1122

 Score =  789 bits (2037), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/1164 (39%), Positives = 675/1164 (57%), Gaps = 123/1164 (10%)

Query: 12   LRELVRHHIESFDYMLDEGLSEMFDH---------------------------------- 37
            L+ L   HI+SF+Y L +GL+E  D+                                  
Sbjct: 25   LQRLGAPHIDSFNYALGQGLTEAIDNLLPVYLTLASGDRIELRIEDVTINHPTVPSGTIG 84

Query: 38   ----------CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQG 87
                      CRQ   +Y GK+ A + +  ++       ER + G+ P+M+K+ +CHL  
Sbjct: 85   VKNHKIYPTECRQRAATYKGKINAKIGWS-INGRKQETVER-SLGEVPIMVKSNKCHLNN 142

Query: 88   ADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAV 147
                +LV++KE   E GGYFI+ G ER+ R +++ ++NYP+++ RS ++ R + ++D  +
Sbjct: 143  MKPAQLVAVKEHEQEWGGYFIIKGHERLIRMLLMTRRNYPIAIKRSGWKQRGDQFSDLGI 202

Query: 148  VIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTC 207
            ++RCVR D ++    L+Y+ +GS +L F  +   Y +P+ ++LK L++ +D  I+N LT 
Sbjct: 203  LLRCVRDDNTATNNSLHYVTDGSAKLMFTHRKVLYYVPLILMLKCLMNVSDKYIYNALTA 262

Query: 208  -CYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQ-SE 265
             C D+ Y K             V  ++  V +  L +  QC  +IG+ F+     L  + 
Sbjct: 263  GCDDDVYYKNC-----------VLNMMRTVHEKDLHSHEQCKAYIGKMFRIKFYELPVNA 311

Query: 266  SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPG 325
            +   V + +I+  I +HL+D  DKF+LL FM +KLF+L D+    +  D++  QE LL G
Sbjct: 312  TDIEVCDFIIKYCIAIHLDDPADKFHLLCFMTKKLFALADNKCAVEGADAVMVQECLLGG 371

Query: 326  HLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGT---SI 382
            HL    +KEKL  WL   + +I    +N G  F      N+++++  N  K  GT    +
Sbjct: 372  HLYLQVIKEKLYSWLMGLRSVIVRRAKNVGNNFTL----NVQEML--NALKSCGTFDSQM 425

Query: 383  ETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLL 442
            E  L TG + +QTGL L Q  G ++ AE +N +R++S FRA+HRG+ F  +RTT  R+LL
Sbjct: 426  ENFLATGNVRSQTGLGLMQSTGLSIVAENINRMRYMSHFRAIHRGSFFQEMRTTEARQLL 485

Query: 443  PESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMI 502
            P++WGF+CPVHTPDG PCGLLNH+T  C V  + D         K++ +I  +L+ +GM 
Sbjct: 486  PDAWGFICPVHTPDGAPCGLLNHLTMNCIVTKHPDP--------KLKNAIPTILLDLGM- 536

Query: 503  PSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVP 562
              LP  +        +V+LDGRV+G+I  + + +VV  LR LK++    +P  +E+  VP
Sbjct: 537  --LPMSIADDWKNSYTVVLDGRVIGLIEDNIVGRVVDKLRVLKINEK--VPPTMEIVLVP 592

Query: 563  L-SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC--PDGGDG 619
              ++   YPG++LFT P + +RPV+N+S+        ELIG FEQV++ I C   +  D 
Sbjct: 593  KKNVPSQYPGVFLFTGPTRMMRPVKNLSV-----NKTELIGTFEQVYLNI-CVTAEEADE 646

Query: 620  GRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRAD 679
            G       TH+E+  T  LS +A L P  D NQSPRNMYQCQM KQTMG      + +A+
Sbjct: 647  GL-----TTHQELSKTTFLSNLACLIPMPDCNQSPRNMYQCQMGKQTMGTPCLTWQQQAE 701

Query: 680  QKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGM 739
             KLY LQTP TP+ R   +    +DE+  GTNAIVAV++YTGYDMEDAMI+NKS+ +RG 
Sbjct: 702  TKLYRLQTPSTPLFRPVHHDNINLDEFAMGTNAIVAVISYTGYDMEDAMIINKSAYERGF 761

Query: 740  CHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCS 799
             HG IY++E I+L +  +        F R+ +   L   +DSDGLP  G ++  G+PY S
Sbjct: 762  AHGMIYKSEFIELKEQSD-------YFARDPNRADLVDKLDSDGLPNPGTILQEGDPYYS 814

Query: 800  IYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHG 859
             Y     ++     KG E+ FVD + +      +   K  I  R +RNP +GDKF+SR G
Sbjct: 815  YYQVDHKTFLIGKYKGKEAAFVDNIKLCGSLQSSTKGKVCITLRISRNPSVGDKFASRAG 874

Query: 860  QKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDA 919
            QKG+CSQ WP  D+PF+  TG+ PD++ NPH FPSRMTIAM++E +A K G++HG   DA
Sbjct: 875  QKGICSQKWPAEDLPFTE-TGLIPDIVFNPHGFPSRMTIAMMIEVMAGKSGAVHGLVHDA 933

Query: 920  TPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGP 979
            TPF  S           E+ + V+  G++L   G+NY+G E +YSG+ G E+T +IF G 
Sbjct: 934  TPFRFS-----------ENDTAVEYFGKLLEQGGYNYYGTERIYSGIDGREMTADIFFGV 982

Query: 980  VYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHD 1039
            V+YQRLRHMVSDK+QVRSTG +D +TRQPIKGR+RGGG+RFGEMERDSL++HG ++LL D
Sbjct: 983  VHYQRLRHMVSDKWQVRSTGPIDVLTRQPIKGRRRGGGVRFGEMERDSLISHGCSFLLQD 1042

Query: 1040 RLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGME 1099
            RL  CSD     VC  CG++L        + AI + G  P  R   ++ C  C     + 
Sbjct: 1043 RLFHCSDKTTTLVCKKCGTLLGPVM----ELAINKAG--PGER---RMRCRLCGDDGVLG 1093

Query: 1100 TVAMPYVFRYLAAELAAMNIKITL 1123
             V +PY+FRYL  +LA+ NI + +
Sbjct: 1094 EVDVPYIFRYLVTQLASCNINVKI 1117


>gi|268561614|ref|XP_002646487.1| Hypothetical protein CBG19469 [Caenorhabditis briggsae]
          Length = 1131

 Score =  789 bits (2037), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/1105 (38%), Positives = 646/1105 (58%), Gaps = 76/1105 (6%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CRQ  ++Y G L  +++    +    ++      G+ P+ML++  CHL+G   ++LV+  
Sbjct: 73   CRQRGMTYAGNLKVNIDVHVNETRLDIIETIL--GKVPIMLRSEGCHLRGMSRKQLVAAG 130

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EE  E GGYFI+NG E+V R +I  ++N+P++++R +F+++ + +++  V++R V+++ +
Sbjct: 131  EEPIEKGGYFIVNGSEKVIRLLIANRRNFPIAIIRKTFKEKGKLFSEFGVMMRSVKENHT 190

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            +V + ++YL  G+++L    + + + +P+  ++KAL + ND  I              +K
Sbjct: 191  AVMMTMHYLDTGTMQLALQFRREIFYIPMMYIVKALTNKNDAVISAEF----------KK 240

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQS--ESYYAVAETVI 275
            G       +  +  +LA+ Q+  +  +   +  IG  F+  +       E        ++
Sbjct: 241  GRPKDQFFASCILNMLAQCQEEGILDQESAITAIGSRFRVAVSDRVGPWEKDIDAGRFIL 300

Query: 276  RDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEK 335
            ++ + +HL D+ +KF  L +M QKL +LV      + PD+ Q QE  + GH++ + L+E+
Sbjct: 301  KECVLIHLEDDEEKFYTLAYMAQKLIALVKGECAPETPDNPQFQEASVSGHILLLILRER 360

Query: 336  LEDWLRKGKKLIQDEIENNGKKFDF-FNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQ 394
            +E+ L     +++ +IE    + DF    A I K +  +   +I   +   L TG L T+
Sbjct: 361  MENIL----GMVRRKIEFMSARQDFRLTSAQILKALGNHNGGEITRGMAYFLATGNLVTR 416

Query: 395  TGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHT 454
             GL LQQ +G++V AER+N LRF+S FRA+HRGA F  +RTT VRKL PE+WGF+CPVHT
Sbjct: 417  VGLALQQESGFSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICPVHT 476

Query: 455  PDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPP 514
            PDG PCGLLNH+T++C + ++     N+       TS+L  L   GM     K V   P 
Sbjct: 477  PDGAPCGLLNHVTASCEIVTHLTDNSNV-------TSMLAEL---GMYTQ--KTVSMAPS 524

Query: 515  A--VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS-----LGG 567
               +  VL+DG+ +G +P ++   +  +LR  KV+  + IP   E+  V  S     +  
Sbjct: 525  GEELYPVLMDGKFIGYVPIAKAASIERYLRCAKVAKDARIPYTAEIALVRRSTDIKNIQT 584

Query: 568  AYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFP 626
             YPG+Y+ + P + +RPVRN++L S     +E IG FEQV++ +   P+  + G      
Sbjct: 585  QYPGIYILSDPGRLIRPVRNLALDS-----VEHIGTFEQVYLSVVLDPEEAEPG-----V 634

Query: 627  ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQ 686
              H+E+HP+ + S   NL P+ DHNQSPRN+YQCQM KQTMG +V A   RAD K+Y LQ
Sbjct: 635  TMHQELHPSCLFSFAGNLIPFPDHNQSPRNVYQCQMGKQTMGTAVHAWHTRADNKMYRLQ 694

Query: 687  TPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQ 746
             PQ P+++   Y KY +DEYP GTNA VAV++YTGYDMEDAM +NK+S  RG  HG + +
Sbjct: 695  FPQQPMLKLEAYEKYQMDEYPLGTNACVAVISYTGYDMEDAMTINKASYQRGFAHGTVIK 754

Query: 747  TETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN 806
             E I+L  +  K    + +F +N   +     +  DGLP  G+     E Y   ++  T 
Sbjct: 755  VERIELVTEREK----KTIFHKN--PREEIKTVGPDGLPIPGRRYFMDEVYYVTFNMETG 808

Query: 807  SWRTNSRKGSESVFVDYVAVDMKNSK---NLPQKANIRFRHTRNPIIGDKFSSRHGQKGV 863
             +RT+    +E  +   V + ++NS+      Q A I++R  RNPIIGDKF+SRHGQKG+
Sbjct: 809  DFRTHKFHYAEPAYCGMVRI-VENSEAPGGGAQHALIQWRIERNPIIGDKFASRHGQKGI 867

Query: 864  CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFA 923
             S LWP   +PFS  TGM PD+I NPH FPSRMTI M++ES+A K  + HG+  DA+PF 
Sbjct: 868  NSFLWPTESLPFSE-TGMVPDIIFNPHGFPSRMTIGMMIESMAGKCAATHGENYDASPFV 926

Query: 924  NSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQ 983
                        +E  + ++  GE+L   G+NY+G E  YSGV G ++  +IF G VYYQ
Sbjct: 927  -----------FNEDNTAINHFGELLTKAGYNYYGNETFYSGVDGRQMEMQIFFGIVYYQ 975

Query: 984  RLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHT 1043
            RLRHM++DKFQVR+TG +D IT QP+KGRK+GGGIRFGEMERD+++AHG +++L DRL  
Sbjct: 976  RLRHMIADKFQVRATGPIDPITHQPVKGRKKGGGIRFGEMERDAIIAHGTSFVLQDRLLN 1035

Query: 1044 CSDYHVADVCSLCGSVLTATFIHPQ-----KRAIREIGGLPPARAPKKVTCHACQTSKGM 1098
            CSD  VA  C  CGS+L+    + +     KR   E          +   C  C     +
Sbjct: 1036 CSDRDVAYACRRCGSLLSVLMSNKKQSFANKRRFHEENEDAQLDYTETQRCRTCDRDDQV 1095

Query: 1099 ETVAMPYVFRYLAAELAAMNIKITL 1123
              + +P VFR+L AELAAMN+KI L
Sbjct: 1096 FLLQVPRVFRFLTAELAAMNVKIKL 1120


>gi|380016936|ref|XP_003692423.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like [Apis
            florea]
          Length = 1122

 Score =  786 bits (2031), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/1166 (39%), Positives = 672/1166 (57%), Gaps = 119/1166 (10%)

Query: 12   LRELVRHHIESFDYMLDEGLSE-------MFDH--------------------------- 37
            L+ L   HI+SF+YML++GL +       ++ H                           
Sbjct: 25   LQRLGAPHIDSFNYMLEDGLCKAVKDNPHVYIHLPNKDKVALWIDDVSIDQPSVPSGIIG 84

Query: 38   ----------CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQG 87
                      CRQ   SY GK+   + +   D    ++    + G+ P+M+K+ +CHL  
Sbjct: 85   VKTHKIYPTECRQRGCSYKGKITVKLGWSINDKLQEILAR--DLGEIPIMIKSNKCHLNK 142

Query: 88   ADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAV 147
             + + LV   E   E GGYF++ GLER+ R +++ ++NYP+++ RS ++ R   ++D  +
Sbjct: 143  MNPKDLVLHGEHEQEWGGYFVIKGLERIIRMLLMTRRNYPIAIKRSGWKTRGIQFSDLGL 202

Query: 148  VIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTC 207
             +R VR D ++    L+Y+ +GS +L F  +   Y +P+ ++LK LVD +D+ I+N LT 
Sbjct: 203  FLRSVRDDNTTANNTLHYVTDGSAKLMFSHKKVLYYVPLILILKCLVDVSDIFIYNALTA 262

Query: 208  -CYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGL-QSE 265
             C  + Y K  G + +         +L  V +  L    +C  +IG+ F+     L +  
Sbjct: 263  GCESDLYYK--GCILN---------MLRAVHEQGLNNHEECKAYIGKMFRIKFFELPEDA 311

Query: 266  SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPG 325
            S   V + +I+  I +HLN+  DKF LL FM +KLF+L ++    +  DS+  QE LL G
Sbjct: 312  SDIDVCDFIIKHCIAIHLNNPLDKFYLLAFMTKKLFALANNKCAVEGADSVMMQECLLGG 371

Query: 326  HLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
            HL    LKEKL  WL   K  I     + G ++   N+  +  VM+   S  + + +E  
Sbjct: 372  HLYLQVLKEKLYSWLTNLKMGILKRARSAGNRYTL-NVQEMLNVMKYGNS--LESQMENF 428

Query: 386  LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
            L TG L + TGL L Q  G T+ AE +N +R++S FRA+HRG+ F  +RTT  R+LLP++
Sbjct: 429  LSTGNLRSSTGLGLMQNTGLTIVAENINRMRYMSHFRAIHRGSFFQEMRTTEARQLLPDA 488

Query: 446  WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP-S 504
            WGF+CPVHTPDG PCGLLNH+T  C +  + D+        K++ +I  +L+ +GMIP S
Sbjct: 489  WGFICPVHTPDGAPCGLLNHLTMNCIITKHPDA--------KLKANIPIILMDLGMIPLS 540

Query: 505  LPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL- 563
            +    K+       V+LDG+++G+I  + I +V   LR LK+    V P  +E+  VP  
Sbjct: 541  IADNWKNS----YIVMLDGKLIGLIDDNIITRVTDKLRLLKIKGQEV-PYMMEIALVPKK 595

Query: 564  SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC--PDGGDGGR 621
            ++   YPGLYLFTSP + +RP+ N++     ++N+E IG FEQ++++I C  P+    G 
Sbjct: 596  TVPAQYPGLYLFTSPARMMRPIMNLA-----AKNVEYIGTFEQIYLDI-CVTPEEAYEGL 649

Query: 622  RNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQK 681
                  +H+E+  T  LS +A+L P  D+NQSPRNMYQCQM+KQTMG      + +++ K
Sbjct: 650  -----TSHQELSKTAFLSNLASLIPMPDYNQSPRNMYQCQMSKQTMGTPCHTWQLQSETK 704

Query: 682  LYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCH 741
            LY LQTP TP+ R   + K  +D++  GTNAIVAV++YTGYDMEDAMI+NK++ DRG  H
Sbjct: 705  LYRLQTPATPLFRPVHHDKINLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAYDRGFAH 764

Query: 742  GQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIY 801
            G IY++E +DL D        +  F RN D   L   +D DGLP  G +I  G+ Y   Y
Sbjct: 765  GLIYKSEFVDLKDQ-------KSYFARNPDKSELVEKLDIDGLPLPGTIISEGDVYYCYY 817

Query: 802  DKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQK 861
            D   +++ T    G E  +VD V +      ++P++A I FR  RNP +GDKF+SR GQK
Sbjct: 818  DADQSTYITGKYHGKEDAYVDTVKLCGTLHNHIPRRACITFRIPRNPSVGDKFASRAGQK 877

Query: 862  GVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATP 921
            G+CSQ W   D+PF+  TG+ PD++ NPH FPSRMTIAM++E +A K  ++HG   DAT 
Sbjct: 878  GICSQKWSAEDLPFTE-TGLIPDIVFNPHGFPSRMTIAMMIELMAGKSAAIHGLVHDATS 936

Query: 922  FANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVY 981
            F             +E+++ V+  G++L   G+NY+G E +YSG+ G E+T +IF G V+
Sbjct: 937  FR-----------FNENETAVEYFGKLLERGGYNYYGTERMYSGIDGREMTADIFFGIVH 985

Query: 982  YQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRL 1041
            YQRLRHMVSDK+QVRSTG +D +TRQPIKGR+RGGG+RFGEMERDSL++HG ++LL DRL
Sbjct: 986  YQRLRHMVSDKWQVRSTGPIDVLTRQPIKGRRRGGGVRFGEMERDSLISHGCSFLLQDRL 1045

Query: 1042 HTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETV 1101
              CSD     VC  CG++L      P         GL       K  C  C   + +  +
Sbjct: 1046 FHCSDKTTTLVCQKCGTLLG-----PVLEMALNASGL-----GNKSRCRLCGDDESVREI 1095

Query: 1102 AMPYVFRYLAAELAAMNIKITLQLGD 1127
             +PY+FRYL  +L + NI + L   +
Sbjct: 1096 DIPYIFRYLVTQLTSCNINVKLSFAE 1121


>gi|195118276|ref|XP_002003666.1| GI21635 [Drosophila mojavensis]
 gi|193914241|gb|EDW13108.1| GI21635 [Drosophila mojavensis]
          Length = 1122

 Score =  785 bits (2027), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/1098 (39%), Positives = 646/1098 (58%), Gaps = 85/1098 (7%)

Query: 39   RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
            RQ   SY+G     + +   D   P +    + G  PVML++  C+L  A   ++V   E
Sbjct: 96   RQLHASYSGVCSVRLGWSVNDLEKPSIN--MDLGDVPVMLRSHACNLGSASPAEMVKHGE 153

Query: 99   EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
              +E GG F++ G E++ R +I+ ++NYP+ + RSS++DR   +++  ++++ VR D+ S
Sbjct: 154  HDSEWGGIFVIRGNEKIVRMLIMTRRNYPICVKRSSWKDRGHNFSELGIMVQTVRDDEMS 213

Query: 159  VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKG 218
            +T  L+YL NG+ R  F    +   +PV ++LK L+D  D +I+N    C  + Y+ ++ 
Sbjct: 214  LTNVLHYLNNGTARFMFSHVKRLSYVPVCLILKCLMDYTDEQIYN----CLVQGYESDQY 269

Query: 219  AVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIG----EHFQPVIDGLQSESYYAVAETV 274
             +        V+ +L +VQ+  + T  QC   IG      FQ V + +  E   AV E +
Sbjct: 270  YLTC------VQSMLRDVQNEGVYTSAQCRSFIGTLFRSRFQEVPEWMPDE---AVTEFI 320

Query: 275  IRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKE 334
            IR+ I VHLN N +KF L++FM+QKLF         +N DS   QE+LLPGHL   YL E
Sbjct: 321  IRERIMVHLNTNEEKFQLIVFMVQKLFQCAQGKFKVENVDSAMMQEVLLPGHLYQKYLGE 380

Query: 335  KLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQ 394
            +LE WL   +K +  ++          + + + + M +  +  +G ++E+ L TG +A++
Sbjct: 381  RLEMWLMHLRKCLLKKLNTPD---SLVSSSIMTQCMRQ--AGGVGRAMESFLATGNVASR 435

Query: 395  TGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHT 454
            TGL L Q  G  + AE +N +R++S FRA+HRG+ F  +RTT  R+LLP++WGF+CPVHT
Sbjct: 436  TGLGLMQSTGLVIMAENINRMRYMSHFRAIHRGSYFTTMRTTEARQLLPDAWGFICPVHT 495

Query: 455  PDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPP 514
            PDG PCGLLNH+T TC ++   D         K+  +I  +L+ +GMIP    L + G P
Sbjct: 496  PDGTPCGLLNHLTLTCEISKRPDP--------KLVQAIPSMLLEMGMIP----LSQQGQP 543

Query: 515  --AVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGL 572
               +  V LDG+ +G I  +E  K+V  LR  K++    +P+ +E+G++P    G +PGL
Sbjct: 544  DAKLYVVFLDGKHLGHIFQTEANKIVEDLRYAKITGK--VPEMMEIGFIPYKKNGQFPGL 601

Query: 573  YLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFP--ATHE 630
            +L T P + +RPV N+       + +E IG  EQ++MEI   +      +  +P   TH 
Sbjct: 602  FLCTGPTRMMRPVWNLKW-----RRVEYIGTLEQLYMEIAIDE------KEMYPDFTTHL 650

Query: 631  EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQT 690
            E+  T  +S +ANL P  D+NQSPRNMYQCQM KQTMG        +A  KLY LQTP T
Sbjct: 651  ELSKTHFMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWSKQAANKLYRLQTPAT 710

Query: 691  PIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETI 750
            P+ R   Y    +D++  GTNAIVAV++YTGYDMEDAMI+NKS+ +RG  +G IY+++ +
Sbjct: 711  PLFRPVHYDNIQLDDFAMGTNAIVAVISYTGYDMEDAMIINKSAYERGFAYGSIYKSKFV 770

Query: 751  DLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRT 810
             LS       + Q  F R+     L   +D+DGLP+ G  +  G P    +D   ++++ 
Sbjct: 771  QLS-------KKQSYFARHPHMPELIKHLDTDGLPHPGTKLSYGSPLYCYFDGEVSTYKV 823

Query: 811  NSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQLWP 869
                  E   VD V   + + + +P+K   I  R  R   IGDKF+SR GQKG+CSQ +P
Sbjct: 824  VKMDEKEDCIVDSVR-QLGSFEIMPRKTVCITLRVARPATIGDKFASRAGQKGICSQKYP 882

Query: 870  DIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKT 929
              D+PF+  +G+ PD++ NPH FPSRMTIAM++E++A K  +LHG   DATPF  S    
Sbjct: 883  AEDLPFTE-SGLIPDIVFNPHGFPSRMTIAMMIETMAGKSAALHGGVYDATPFRFS---- 937

Query: 930  NGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMV 989
                   E  + +D  G+ML   G+NY+G E LYSGV G E+T +IF G V+YQRLRHMV
Sbjct: 938  -------EDNTAIDYFGKMLEAGGYNYYGTERLYSGVDGREMTADIFFGVVHYQRLRHMV 990

Query: 990  SDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHV 1049
             DK+QVRSTG ++  T QPIKGRKRGGG+RFGEMERD+L++HGAA+LL DRL   SD   
Sbjct: 991  FDKWQVRSTGAVEARTNQPIKGRKRGGGVRFGEMERDALISHGAAFLLQDRLFHNSDKTH 1050

Query: 1050 ADVCSLCGSVLTATFIHPQKRAIR--EIGGLPPARAPKKVTCHACQTSKGMETVAMPYVF 1107
              VC  CGS+L      P ++ I+  + GGL  +  P+  TC  C  S G+  + +P+ F
Sbjct: 1051 TLVCHKCGSILA-----PLQQIIKRNQTGGL--SSMPE--TCRLCGDSSGVSMIEIPFSF 1101

Query: 1108 RYLAAELAAMNIKITLQL 1125
            ++L  EL+++NI    +L
Sbjct: 1102 KFLVTELSSVNINARFKL 1119


>gi|350399850|ref|XP_003485659.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like [Bombus
            impatiens]
          Length = 1122

 Score =  785 bits (2026), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/1165 (38%), Positives = 672/1165 (57%), Gaps = 117/1165 (10%)

Query: 12   LRELVRHHIESFDYMLDEGLSE-------MFDH--------------------------- 37
            L+ L   HI+SF+YML++GLSE       ++ H                           
Sbjct: 25   LQSLGAPHIDSFNYMLEDGLSEAVRDNPLVYIHLPNEDKIALWIDDVSIHQPSIPSGAIG 84

Query: 38   ----------CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQG 87
                      CRQ   +Y GK++  + +  ++       ER + G+ P+M+K+ RCHL  
Sbjct: 85   VKNHKIYPTECRQRGCTYKGKIIVKLGWS-INNKVQETLER-DLGEIPIMIKSNRCHLSK 142

Query: 88   ADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAV 147
               + LV+  E   E GGYFI+ GLER+ R +++ ++NYP+++ RS ++ R   ++D  +
Sbjct: 143  MSPKDLVAHGEHEQEWGGYFIIKGLERIIRMLLMTRRNYPIAIRRSGWKARGIQFSDLGL 202

Query: 148  VIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTC 207
            ++R VR D ++    L+Y+ +GS +L F  +   Y +P+ ++LK LVD +D+ I++ LT 
Sbjct: 203  LLRSVRDDNTTANNTLHYVTDGSAKLMFSYRKVLYYVPLILMLKCLVDVSDIFIYSALTA 262

Query: 208  -CYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSES 266
             C D+ Y K  G + +         +L  V +  L +  +C  +IG  F+  +  L  ++
Sbjct: 263  GCEDDLYYK--GCILN---------MLRAVHEQGLNSHEECKAYIGRMFRIKLFELPYDA 311

Query: 267  Y-YAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPG 325
                V + +I+  I +HL+D  DKF LL FM +KLF+L ++    +  D++  QE LL G
Sbjct: 312  TDIDVCDFIIKHCIAIHLHDPLDKFYLLAFMTKKLFALANNKCAVEGADAVMMQECLLGG 371

Query: 326  HLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
            HL    LKE+L  WL   K  I     + G ++   N+  +   M+   S ++   +E  
Sbjct: 372  HLYLQVLKERLYSWLTGLKMGILKRARSAGNRYTL-NVQEMLNAMKHGNSLEL--QMENF 428

Query: 386  LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
            L TG L + TGL L Q  G T+ AE +N +R++S FRA+HRG+ F  +RTT  R+LLP++
Sbjct: 429  LSTGNLRSPTGLGLMQNTGLTIVAENINRMRYMSHFRAIHRGSFFQEMRTTEARQLLPDA 488

Query: 446  WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
            WGF+CPVHTPDG PCGLLNH+T  C +  + +         K++ ++  +L+ +GMIP  
Sbjct: 489  WGFICPVHTPDGAPCGLLNHLTMNCIITKHTNP--------KLKANVPIILMDLGMIPLS 540

Query: 506  PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL-S 564
               +         V+LDG+++G+I  + I +V   LR LK+    V P  +E+  VP  +
Sbjct: 541  ---IADNWKKSYIVILDGKLIGLIDDNIISRVTDKLRLLKIKGQEV-PCTMEIALVPKKN 596

Query: 565  LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC--PDGGDGGRR 622
            +   YPGLYLFT+P + +RPV N++     ++ +E IG FEQ+++ I C  P+    G  
Sbjct: 597  VPAQYPGLYLFTNPARMMRPVMNLA-----AKKVEYIGTFEQIYLNI-CVTPEEAYEGL- 649

Query: 623  NAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKL 682
                 +H+E+  T  LS +A+L P  D NQSPRNMYQCQM KQTMG      + +++ KL
Sbjct: 650  ----TSHQELSKTAFLSNLASLIPMPDCNQSPRNMYQCQMGKQTMGTPCHTWQLQSETKL 705

Query: 683  YHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG 742
            Y LQTP TP+ R   Y +  +D++  GTNAIVAV++YTGYDMEDAMI+NK++ DRG  HG
Sbjct: 706  YRLQTPATPLFRPVHYDEINLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAHDRGFAHG 765

Query: 743  QIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYD 802
             IY++E +DL D        +  F RN D   L   +D DGLP +G MI  G+ Y   YD
Sbjct: 766  LIYKSEFVDLKDQ-------KSYFARNPDKPDLAEKLDVDGLPILGTMISEGDVYYCYYD 818

Query: 803  KTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKG 862
               +++ T    G E  +VD V +      ++P++A I FR  RN  +GDKF+SR GQKG
Sbjct: 819  ADQSTYVTGKYHGKEDAYVDTVKLCGTLHSHIPRRACITFRIPRNANVGDKFASRAGQKG 878

Query: 863  VCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPF 922
            +CSQ WP  D+PF+  TG+ PD++ NPH FPSRMTIAM++E +A K  ++HG   DAT F
Sbjct: 879  ICSQKWPAEDLPFTE-TGLIPDIVFNPHGFPSRMTIAMMIEVMAGKSAAIHGLVHDATSF 937

Query: 923  ANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYY 982
                         +E ++ V+  G++L   G+NY+G E +YSG+ G E+T +IF G V+Y
Sbjct: 938  R-----------FNEDETAVEYFGKLLERGGYNYYGTERMYSGIDGREMTADIFFGIVHY 986

Query: 983  QRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLH 1042
            QRLRHMVSDK+QVRSTG +D +TRQPIKGR+RGGG+RFGEMERDSLL+HG ++LL DRL 
Sbjct: 987  QRLRHMVSDKWQVRSTGPIDVLTRQPIKGRRRGGGVRFGEMERDSLLSHGCSFLLQDRLF 1046

Query: 1043 TCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVA 1102
             CSD     VC  CG++L           + E+ GL  +    K  C  C   + +  V 
Sbjct: 1047 HCSDKTTTLVCKKCGTLLG---------PVMEM-GLSASGLNDKTKCRLCGDDESVREVD 1096

Query: 1103 MPYVFRYLAAELAAMNIKITLQLGD 1127
            +PY+FRYL  +L + NI + L   +
Sbjct: 1097 IPYIFRYLVTQLTSCNINVKLSFAE 1121


>gi|17506623|ref|NP_492476.1| Protein RPOA-2 [Caenorhabditis elegans]
 gi|3875865|emb|CAA99827.1| Protein RPOA-2 [Caenorhabditis elegans]
          Length = 1127

 Score =  784 bits (2025), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/1105 (38%), Positives = 644/1105 (58%), Gaps = 80/1105 (7%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CRQ  ++Y G L   ++      GS +       G+ P+ML++  CHL+G   ++LV   
Sbjct: 73   CRQRGLTYAGNLKVGIDVHV--NGSRLDIIEIILGKVPIMLRSEGCHLRGMSRKELVVAG 130

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EE  E GGYFI+NG E+V R +I  ++N+P++++R +F+++ + +++  V++R V+++ +
Sbjct: 131  EEPIEKGGYFIVNGSEKVIRLLIANRRNFPIAIIRKTFKEKGKLFSEFGVMMRSVKENHT 190

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            +V + L+YL  G+++L    + + + +P+  ++KAL D ND  I              ++
Sbjct: 191  AVMMTLHYLDTGTMQLALQFRREIFYVPLMYIVKALTDKNDAVISAGF----------KR 240

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQS--ESYYAVAETVI 275
            G       S  +  +LA+ Q+  +  +   ++ IG  F+  +    +  E        +I
Sbjct: 241  GRNQDQFYSSCILNMLAQCQEEEILNQEAAIRAIGSRFRVAVSDRVAPWEDDLEAGRFII 300

Query: 276  RDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEK 335
            R+ + +HL+ + +KF+ L +M QKL +LV      + PD+ Q QE  + GH++ + L+E+
Sbjct: 301  RECVLIHLDSDEEKFHTLAYMTQKLIALVKGECAPETPDNPQFQEASVSGHILLLILRER 360

Query: 336  LEDWLRKGKKLIQDEIENNGKKFDF-FNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQ 394
            +E+ +     +++ ++E    + DF    A I K +  +   +I   +   L TG L T+
Sbjct: 361  MENII----GMVRRKLEYMSSRKDFILTSAAILKALGNHTGGEITRGMAYFLATGNLVTR 416

Query: 395  TGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHT 454
             GL LQQ +G++V AER+N LRF+S FRA+HRGA F  +RTT VRKL PE+WGF+CPVHT
Sbjct: 417  VGLALQQESGFSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICPVHT 476

Query: 455  PDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPP 514
            PDG PCGLLNH+T++CR+ +      N+            +L  +GM     K V   PP
Sbjct: 477  PDGAPCGLLNHVTASCRIVTDLSDNSNVPS----------LLAELGMYTH--KTVALAPP 524

Query: 515  A--VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS-----LGG 567
               +  VL++GR +G +P ++   +  +LR  KV+  + IP   E+  V  S     +  
Sbjct: 525  GEELYPVLMNGRFLGYVPITKAASIERYLRCAKVAKDARIPYTSEIALVRRSTDIKNIQT 584

Query: 568  AYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFP 626
             YPG+Y+ +   + +RPVRN+++ +     +E IG FEQV++ +   P+  + G      
Sbjct: 585  QYPGIYILSDAGRLIRPVRNLAMDA-----VEHIGTFEQVYLSVVLDPEEAEPG-----V 634

Query: 627  ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQ 686
              H+E+HP+ + S   NL P+ DHNQSPRN+YQCQM KQTMG +V A   RAD K+Y LQ
Sbjct: 635  TMHQELHPSCLFSFAGNLIPFPDHNQSPRNVYQCQMGKQTMGTAVHAWHSRADNKMYRLQ 694

Query: 687  TPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQ 746
             PQ P+++   Y KY +DEYP GTNA VAV++YTGYDMEDAM +NK+S  RG  HG + +
Sbjct: 695  FPQQPMLKLEAYEKYEMDEYPLGTNACVAVISYTGYDMEDAMTINKASYQRGFAHGTVIK 754

Query: 747  TETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN 806
             E I+L  +  +    + +F RN   +     +  DGLP  G+     E Y   ++  T 
Sbjct: 755  VERINLVTERER----KTIFYRNPREEI--KTVGPDGLPIPGRRYFLDEVYYVTFNMETG 808

Query: 807  SWRTNSRKGSESVFVDYV-AVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCS 865
             +RT+    +E  +   V  V+     +  + A I++R  RNPIIGDKF+SRHGQKG+ S
Sbjct: 809  DFRTHKFHYAEPAYCGLVRIVEQGEGDSGAKHALIQWRIERNPIIGDKFASRHGQKGINS 868

Query: 866  QLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANS 925
             LWP   +PFS  TGM PD+I NPH FPSRMTI M++ES+A K  + HG+  DA+PF   
Sbjct: 869  FLWPVESLPFSE-TGMVPDIIFNPHGFPSRMTIGMMIESMAGKAAATHGENYDASPFV-- 925

Query: 926  VKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRL 985
                      +E  + ++  GE+L   G+NY+G E  YSGV G ++  +IF G VYYQRL
Sbjct: 926  ---------FNEDNTAINHFGELLTKAGYNYYGNETFYSGVDGRQMEMQIFFGIVYYQRL 976

Query: 986  RHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCS 1045
            RHM++DKFQVR+TG +D IT QP+KGRK+GGGIRFGEMERD+++AHG +++L DRL  CS
Sbjct: 977  RHMIADKFQVRATGPIDPITHQPVKGRKKGGGIRFGEMERDAIIAHGTSFVLQDRLLNCS 1036

Query: 1046 DYHVADVCSLCGSVLT-------ATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGM 1098
            D  VA  C  CGS+L+        + +  +KR   E     P    +   C  C     +
Sbjct: 1037 DRDVAYACRRCGSLLSVLMSSRAGSHLLKKKRKDDE-----PLDYTETQRCRTCDKDDQV 1091

Query: 1099 ETVAMPYVFRYLAAELAAMNIKITL 1123
              + +P VFRYL AELAAMN+KI L
Sbjct: 1092 FLLQVPRVFRYLTAELAAMNVKIKL 1116


>gi|322801624|gb|EFZ22265.1| hypothetical protein SINV_10883 [Solenopsis invicta]
          Length = 1120

 Score =  783 bits (2022), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/1173 (38%), Positives = 662/1173 (56%), Gaps = 119/1173 (10%)

Query: 2    ARKKSADFEPLRELVRHHIESFDYMLDEGLSEMF-------------------------- 35
             R      E L+ L   HIESF+YML++GL +                            
Sbjct: 15   GRSPDTQNEILQSLGTPHIESFNYMLEDGLYQNLKDNTPVYVTLPNSDKIVLWLDDVHIY 74

Query: 36   ------------------DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVM 77
                                CRQ  ++Y GK++A + +  ++     + E+ + G+ P+M
Sbjct: 75   KPAAPTNTIGLKSYKIYPSECRQRGVTYKGKIIARIGWS-INGKEQEILEK-DLGEVPIM 132

Query: 78   LKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRD 137
            LK+ RCHL     ++LV+  E   E GGYFI+ GLER+ R +I+ ++NYP+++ R  ++ 
Sbjct: 133  LKSNRCHLNKMSPKELVAHGEHEQEWGGYFIIKGLERLVRMLIMTRRNYPIAVKRPIWKG 192

Query: 138  RREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTN 197
            R E ++D  +++R VR D S+V   L+Y+ +GS +  F  +   Y +P+ ++LK L D  
Sbjct: 193  RGEQFSDLGILLRSVRDDNSTVNNTLHYVTDGSAKFAFAYKKATYYVPLILMLKCLKDVT 252

Query: 198  DLEIFNHLTC-CYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ 256
            DL I+  L   C D+ Y            +  +  +L  V +  L    QC  +IG+ F+
Sbjct: 253  DLCIYKALLAGCEDDLY-----------YNNSIMNMLRAVHEEGLHWHEQCKAYIGKMFR 301

Query: 257  PVIDGLQSESY-YAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
                 L  ++    V + ++++ + +HL++  DKF+LL+FM +KLF+  ++    +  DS
Sbjct: 302  VKFSELPEDATDIDVCDYIVKNCVAIHLDEPADKFDLLVFMTKKLFAFSNNKCAVEGVDS 361

Query: 316  LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFF--NLANIKKVMEKN 373
            +  QE L+ GHL    L EKL  WL   K  I    ++ G ++      + N+ K+    
Sbjct: 362  VMMQECLMGGHLYLQVLNEKLCSWLVGVKHHILKRAKSAGNRYTLSVQEMLNVTKL---- 417

Query: 374  PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
                I   +E  L TG + + +GL L Q +G T+  E +N +R++S FRA+HRGA F  +
Sbjct: 418  -RCNIDAQMEYFLSTGSIRSSSGLGLTQSSGLTIVVENINRMRYMSHFRAIHRGAFFQEM 476

Query: 434  RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
            RTT  R+LLP++WGF+CP+HTPDG PCGLLNH+T  C V  + ++        K++ +I 
Sbjct: 477  RTTEARQLLPDAWGFICPIHTPDGAPCGLLNHLTMNCIVTKHPNA--------KLKAAIP 528

Query: 494  RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIP 553
             VL+ +GM P LP  +        +V+LDG+++G+I    I KVV  LR  K+     IP
Sbjct: 529  TVLVDLGMTP-LP--IADDWKNSYNVMLDGKLIGLIEDKIINKVVYELRLRKIKGKE-IP 584

Query: 554  DDLEVGYVPL-SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIR 612
              LE+  VP  ++   YPGL+LFTS  + +RPV N++     +Q IE IG FEQ++++I 
Sbjct: 585  STLEIALVPKKNVPAQYPGLFLFTSAARMMRPVINLA-----AQKIEYIGTFEQIYLDI- 638

Query: 613  CPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQ 672
            C    +         TH+EI  T + S +ANL P  D NQSPRNMYQCQM KQTMG    
Sbjct: 639  CVISQEVYEGMT---THQEISQTTIFSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCH 695

Query: 673  ALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNK 732
              + ++  KLY LQTP TP+ R   Y    +D++  GTNAI+AV++YTGYDMEDAMI+NK
Sbjct: 696  NWQQQSQTKLYRLQTPATPLFRPVHYDNINMDDFAMGTNAIIAVISYTGYDMEDAMIINK 755

Query: 733  SSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIH 792
            SS +RG  HG IY++E +DL+D        +  F R+     L   ID DGLP +G  I 
Sbjct: 756  SSYERGFGHGSIYKSEFVDLNDK-------KSYFARDPAKPDLAKTIDVDGLPMIGIAIK 808

Query: 793  PGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGD 852
             G+ Y S YD  +  +     K +E+ +VD V +      +  ++A I FR  RNPI+GD
Sbjct: 809  EGDAYYSYYDADSAQYVIGKYKSAETAYVDNVKLCGSLGNHDIRRACITFRIPRNPIVGD 868

Query: 853  KFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSL 912
            KF+SR GQKG+ S+L+P  D+PF+  TGM PD+I NPH FPSRMTIAM++E +A K  ++
Sbjct: 869  KFASRAGQKGILSRLYPIEDLPFTE-TGMVPDIIFNPHGFPSRMTIAMMIEVMAGKSAAV 927

Query: 913  HGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELT 972
            HG   DATPF             DE  + +D  G++L   G+NY+G E +YSG+YG ELT
Sbjct: 928  HGLVHDATPFR-----------FDEENTAIDYFGKLLELGGYNYYGTERMYSGIYGCELT 976

Query: 973  CEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHG 1032
              IF G V+YQRLRHMVSDK+QVRSTG +DQ+TRQPIKGR+RGGGIRFGEMERD+L++HG
Sbjct: 977  ANIFFGIVHYQRLRHMVSDKWQVRSTGPIDQLTRQPIKGRRRGGGIRFGEMERDALISHG 1036

Query: 1033 AAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHAC 1092
             +YLL DRL  CSD      C  CGS+L      P+      I             C  C
Sbjct: 1037 CSYLLQDRLFHCSDKITTLACQKCGSILG-----PELTVKSRIDD-------DDKKCRLC 1084

Query: 1093 QTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
                 ++ + +PY+F+YL  +LA+ NI + L+ 
Sbjct: 1085 GEEDTVDEIEIPYIFKYLLIQLASCNINVKLKF 1117


>gi|195470252|ref|XP_002087422.1| GE16780 [Drosophila yakuba]
 gi|194173523|gb|EDW87134.1| GE16780 [Drosophila yakuba]
          Length = 1129

 Score =  780 bits (2014), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/1100 (39%), Positives = 643/1100 (58%), Gaps = 85/1100 (7%)

Query: 39   RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
            RQ  ISY+G  M  V   +   G        + G+ P+ML+++ C+L  A  +++V   E
Sbjct: 103  RQLHISYSG--MCSVRLGWSVNGVEKSPINMDLGEVPIMLRSKACNLGQATPEEMVKHGE 160

Query: 99   EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
              +E GG F++ G E++ R +I+ ++N+P+ + RSS++DR + ++D  ++++ VR+D+SS
Sbjct: 161  HDSEWGGIFVIRGNEKIVRMLIMTRRNHPICVKRSSWKDRGQNFSDLGMLVQTVREDESS 220

Query: 159  VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKG 218
            ++  ++YL NG+ +  F    +   +PV ++LK L+D  D EI+N L           KG
Sbjct: 221  LSNVVHYLNNGTAKFMFSHVKRLSYVPVCLILKCLMDFTDEEIYNRLV----------KG 270

Query: 219  AVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ---PVIDGLQSESYYAVAETVI 275
                      V+ +L EVQ+ ++ T  QC   IG  F+   P +   Q +    V + ++
Sbjct: 271  YESDQYYVSCVQSMLREVQNENVYTHAQCKSFIGNLFRARFPEVPEWQPDE--DVTDFIL 328

Query: 276  RDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEK 335
            R+ + +HL++  DKF L++FM+QKLF         +N DS   QE+LLPGHL   YL E+
Sbjct: 329  RERVMIHLDNYEDKFQLIVFMIQKLFQCAQGKYKVENVDSAMMQEVLLPGHLYQKYLGER 388

Query: 336  LEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQT 395
            +E W+ + ++ +Q ++ +          A + + M +  +  +G +IE+ L TG +A++T
Sbjct: 389  VESWVSQVRRCLQKKLTSPDA---LLTSAVMTQCMRQ--AGGVGRAIESFLATGNIASRT 443

Query: 396  GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTP 455
            GL L Q +G  + AE +N +R++S FRA+HRG+ F  +RTT  R+LLP++WGF+CPVHTP
Sbjct: 444  GLGLMQNSGLVIMAENINRMRYMSHFRAIHRGSYFTTMRTTEARQLLPDAWGFICPVHTP 503

Query: 456  DGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPA 515
            DG PCGLLNH+T TC ++        +R   K+  +I   LI +GMIP L     SG   
Sbjct: 504  DGTPCGLLNHLTLTCEIS--------MRPDPKLVKAIPTQLIDMGMIP-LSNRSYSGE-K 553

Query: 516  VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLF 575
            +  V LDG+ +G I  SE  K+V  LR  K+     +P  +E+G++P    G +PGLYL 
Sbjct: 554  LYVVFLDGKHLGHIHQSEANKIVDDLRYGKIFGT--LPQMMEIGFIPFKKNGQFPGLYLA 611

Query: 576  TSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFP--ATHEEIH 633
            T P + +RPV N+         +E IG  EQ++MEI         ++  +P   TH E+ 
Sbjct: 612  TGPARMMRPVWNLKW-----NKVEYIGTLEQLYMEIAI------DQKEMYPDFTTHLELA 660

Query: 634  PTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIV 693
             T  +S +ANL P  D+NQSPRNMYQCQM KQTMG        +A  KLY LQTP TP+ 
Sbjct: 661  KTHFMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQTPATPLF 720

Query: 694  RTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLS 753
            R   Y    +D++  GTNAIVAV++YTGYDMEDAMI+NK++ +RG  +G IY+T+ + L 
Sbjct: 721  RPVHYDNIQLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAYERGFAYGSIYKTKFLTL- 779

Query: 754  DDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR 813
                  D+    F R+     L   +D+DGLP+ G  +  G P    +D    +++    
Sbjct: 780  ------DKKSSYFARHPHMPELVKHLDTDGLPHPGSKLSYGSPLYCYFDGEVATYKVVKM 833

Query: 814  KGSESVFVDYV----AVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWP 869
               E   V+ +    + D+   K +     I  R  R   IGDKF+SR GQKG+CSQ +P
Sbjct: 834  DEKEDCIVESIRQLGSFDLSPKKTVA----ITLRVPRPATIGDKFASRAGQKGICSQKYP 889

Query: 870  DIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKT 929
              D+PF+  +G+ PD++ NPH FPSRMTIAM++E++A KG ++HG   DATPF  S    
Sbjct: 890  AEDLPFTE-SGLIPDIVFNPHGFPSRMTIAMMIETMAGKGAAIHGNVYDATPFRFS---- 944

Query: 930  NGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMV 989
                   E  + +D  G+ML   G+NY+G E LYSGV G E+T +IF G V+YQRLRHMV
Sbjct: 945  -------EENTAIDYFGKMLEAGGYNYYGTERLYSGVDGREMTADIFFGVVHYQRLRHMV 997

Query: 990  SDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHV 1049
             DK+QVRSTG ++  T QPIKGRKRGGG+RFGEMERD+L++HGAA+LL DRL   SD   
Sbjct: 998  FDKWQVRSTGAVEARTHQPIKGRKRGGGVRFGEMERDALISHGAAFLLQDRLFHNSDKTH 1057

Query: 1050 ADVCSLCGSVLTATFIHPQKRAIR--EIGGLPPARAPKKVTCHACQTSKGMETVAMPYVF 1107
              VC  CGS+L      P +R ++  E GGL    + +  TC  C  +  +  + +P+ F
Sbjct: 1058 TLVCHKCGSILA-----PLQRIVKRNETGGL----SSQPDTCRLCGDNSSVSMIEIPFSF 1108

Query: 1108 RYLAAELAAMNIKITLQLGD 1127
            ++L  EL+++NI    +L +
Sbjct: 1109 KFLVTELSSVNINARFKLNE 1128


>gi|195437584|ref|XP_002066720.1| GK24411 [Drosophila willistoni]
 gi|194162805|gb|EDW77706.1| GK24411 [Drosophila willistoni]
          Length = 1122

 Score =  780 bits (2014), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/1094 (39%), Positives = 644/1094 (58%), Gaps = 77/1094 (7%)

Query: 39   RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
            RQ   SY G  M  +   +   G        + G+ P+ML+++ C+L GA  +++V   E
Sbjct: 96   RQLHASYMG--MCSIRLAWQVNGLQKTSINMDLGEVPIMLRSKACNLGGASPKEMVQHGE 153

Query: 99   EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
              +E GG FI+ G E++ R ++L ++N+P+ + RSS++DR   ++D  V+++ VR D+SS
Sbjct: 154  HDSEWGGIFIIRGNEKIVRMLVLTRRNHPICVKRSSWKDRGHNFSDLGVLVQTVRADESS 213

Query: 159  VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKG 218
             +  L+YL NGS R  F    +   +PV ++LK L+D  D EI+N L     + Y+ ++ 
Sbjct: 214  FSNVLHYLNNGSARFMFSHVKRLSYVPVCLILKCLMDYTDEEIYNRLI----QGYETDQY 269

Query: 219  AVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGL-QSESYYAVAETVIRD 277
             +        V+ +L +VQ+  + T  QC   IG  F+  I  + + E   AV + ++R+
Sbjct: 270  YISC------VQTMLRDVQNEGVYTHAQCRNFIGTLFRSRIAEVPEWEPAEAVTDFILRE 323

Query: 278  YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
             I VHL+   DKF L++FM+QKLF         +N DS   QE+LLPGHL   YL E++E
Sbjct: 324  RIMVHLDSYEDKFQLIVFMVQKLFQCAQGKYKVENVDSAMMQEVLLPGHLYQKYLGERIE 383

Query: 338  DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
             W+ + +K +  ++          + + + + M +  +  +G SIE+ L TG +A+++GL
Sbjct: 384  MWMFQLRKCLLKKLTTPDA---LLSSSTLTQCMRQ--AGGVGRSIESFLATGNIASRSGL 438

Query: 398  DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDG 457
             L Q +G  + AE +N +R++S FRA+HRG+ F  +RTT  R+LLP++WGF+CPVHTPDG
Sbjct: 439  GLMQNSGLVIMAENINRMRYMSHFRAIHRGSYFTTMRTTEARQLLPDAWGFVCPVHTPDG 498

Query: 458  EPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVL 517
             PCGLLNH+T TC ++   D         K+  +I   LI +GM   LP   +  P + L
Sbjct: 499  TPCGLLNHLTLTCEISKRPDP--------KLVKAIPAKLIEMGM---LPLSHRPQPESKL 547

Query: 518  SVL-LDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFT 576
             V+ LDGR +G I  S+  K+V  LR  K+     +P  LE+G++P    G +PGL+L T
Sbjct: 548  YVVFLDGRHLGHIYQSDATKIVEDLRYGKIMGE--LPKMLEIGFIPFKKNGQFPGLFLAT 605

Query: 577  SPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFP--ATHEEIHP 634
            SP + +RPV N+       Q +E IG  EQ++MEI   +      +  +P   TH E+  
Sbjct: 606  SPARMMRPVWNLKW-----QRVEYIGTLEQLYMEIAIDE------KEMYPDFTTHLELAK 654

Query: 635  TGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVR 694
            T  +S +ANL P  D+NQSPRNMYQCQM KQTMG        +A  KLY LQTP TP+ R
Sbjct: 655  THFMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQTPGTPLFR 714

Query: 695  TNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD 754
               +    +D++  GTNAIVAV++YTGYDMEDAMI+NK++ +RG  +G IY+++ + L  
Sbjct: 715  PVHHDNIQLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAYERGFAYGSIYKSKFVQLP- 773

Query: 755  DGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRK 814
                  +    F R+     L   +D+DGLP+ G  +  G P    +D    +++     
Sbjct: 774  ------KKSSYFARHPHMPELQKYLDTDGLPHPGTKLSYGCPMYCYFDGEVATYKVMKMD 827

Query: 815  GSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDM 873
              E  FVD +   + + +  P+K+  I  R  R   IGDKF+SR GQKG+CSQ +P  D+
Sbjct: 828  EKEDCFVDSIR-QLGSFELQPRKSVCITLRVPRPATIGDKFASRAGQKGICSQKYPAEDL 886

Query: 874  PFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDT 933
            PF+  +G+ PD++ NPH FPSRMTIAM++E++A K  ++HG   DATPF  S        
Sbjct: 887  PFTE-SGLIPDIVFNPHGFPSRMTIAMMIETMAGKSAAVHGNVYDATPFRFS-------- 937

Query: 934  GTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKF 993
               E  + +D  G+ML   G+NY+G E LYSGV G E+T +IF G V+YQRLRHMV DK+
Sbjct: 938  ---EQNTAIDYFGKMLEAGGYNYYGTERLYSGVDGREMTADIFFGVVHYQRLRHMVFDKW 994

Query: 994  QVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVC 1053
            QVRSTG ++  T QPIKGRKRGGG+RFGEMERD+L++HGAA+LL DRL   SD     VC
Sbjct: 995  QVRSTGAVEARTHQPIKGRKRGGGVRFGEMERDALISHGAAFLLQDRLFHNSDKTHTLVC 1054

Query: 1054 SLCGSVLTATFIHPQKRAIR--EIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLA 1111
              CGS+L+     P ++ ++  E GGL    + K  TC  C  S  +  + +P+ F++L 
Sbjct: 1055 HKCGSILS-----PLQQIVKRNETGGL----SSKPETCRLCGDSSSVSMIEIPFSFKFLV 1105

Query: 1112 AELAAMNIKITLQL 1125
             EL+++NI    +L
Sbjct: 1106 TELSSVNINARFKL 1119


>gi|194853433|ref|XP_001968165.1| GG24715 [Drosophila erecta]
 gi|190660032|gb|EDV57224.1| GG24715 [Drosophila erecta]
          Length = 1129

 Score =  780 bits (2013), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/1100 (39%), Positives = 646/1100 (58%), Gaps = 85/1100 (7%)

Query: 39   RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
            RQ  ISY+G  M  V   +   G        + G+ P+ML+++ C+L  A  +++V   E
Sbjct: 103  RQLHISYSG--MCSVRLGWTVNGVEKSAINMDLGEVPIMLRSKACNLGQASPEEMVKHGE 160

Query: 99   EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
              +E GG F++ G E++ R +I+ ++N+P+ + RSS++DR + ++D  ++++ VR+D+SS
Sbjct: 161  HDSEWGGIFVIRGNEKIVRMLIMTRRNHPICVKRSSWKDRGQNFSDLGMLVQTVREDESS 220

Query: 159  VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKG 218
            ++  ++YL NG+ +  F    +   +PV ++LK L+D  D EI+N L     + Y+ ++ 
Sbjct: 221  LSNVVHYLNNGTAKFMFSHVKRLSYVPVCLILKCLMDYTDEEIYNRLV----QGYESDQY 276

Query: 219  AVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ---PVIDGLQSESYYAVAETVI 275
             V        V+ +L EVQ+ ++ T  QC   IG  F+   P +   Q +    V + ++
Sbjct: 277  YVSC------VQSMLREVQNENVYTHAQCKSFIGNLFRARFPEVPEWQPDE--DVTDFIL 328

Query: 276  RDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEK 335
            R+ + +HL+ N DKF L++FM+QKLF         +N DS   QE+LLPGHL   YL E+
Sbjct: 329  RERVMIHLDTNEDKFQLIVFMIQKLFQCAQGKYKVENVDSAMMQEVLLPGHLYQKYLGER 388

Query: 336  LEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQT 395
            +E W+ + ++ +Q ++ +          A + + M +  +  +G SIE+ L TG +A++T
Sbjct: 389  VESWVLQVRRCLQKKLTSPD---GLLTSAVMTQCMRQ--AGGVGRSIESFLATGNIASRT 443

Query: 396  GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTP 455
            GL L Q +G  + AE +N +R++S FRA+HRG+ F  +RTT  R+LLP++WGF+CPVHTP
Sbjct: 444  GLGLMQNSGLVIMAENINRMRYMSHFRAIHRGSYFTTMRTTEARQLLPDAWGFICPVHTP 503

Query: 456  DGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPA 515
            DG PCGLLNH+T TC ++        +R   K+  +I + LI +GM+P L      G   
Sbjct: 504  DGTPCGLLNHLTLTCEIS--------MRPDPKLVKAIPKQLIDMGMMP-LSNRSYLGD-K 553

Query: 516  VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLF 575
            +  V LDG+ +G I  SE  K+V  LR  K+     +P  +E+G++P    G +PGLYL 
Sbjct: 554  LYVVFLDGKHLGHIYQSEATKIVDDLRYGKIFGT--LPQMMEIGFIPFKKNGQFPGLYLA 611

Query: 576  TSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFP--ATHEEIH 633
            T P + +RPV N+         +E IG  EQ++MEI          +  +P   TH E+ 
Sbjct: 612  TGPARMMRPVWNLKW-----NRVEYIGTLEQLYMEIAIDS------KEMYPDFTTHLELA 660

Query: 634  PTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIV 693
             T  +S +ANL P  D+NQSPRNMYQCQM KQTMG        +A  KLY LQTP TP+ 
Sbjct: 661  KTHFMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQTPATPLF 720

Query: 694  RTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLS 753
            R   Y    +D++  GTNAIVAV++YTGYDMEDAMI+NK++ +RG  +G IY+T+ + L 
Sbjct: 721  RPVHYDNIQLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAYERGFAYGSIYKTKFLTL- 779

Query: 754  DDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR 813
                  D+    F R+     L   +D+DGLP+ G  +  G P    +D    +++    
Sbjct: 780  ------DKKSSYFARHPHMPELVKHLDTDGLPHPGSKLSYGSPLYCYFDGEVATYKVVKM 833

Query: 814  KGSESVFVDYV----AVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWP 869
               E   V+ +    + D+   K +     I  R  R   IGDKF+SR GQKG+CSQ +P
Sbjct: 834  DEKEDCIVESIRQLGSFDLSPKKTVA----ITLRVPRPATIGDKFASRAGQKGICSQKYP 889

Query: 870  DIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKT 929
              D+PF+  +G+ PD++ NPH FPSRMTIAM++E++A KG ++HG   DATPF  S    
Sbjct: 890  AEDLPFTE-SGLIPDIVFNPHGFPSRMTIAMMIETMAGKGAAIHGNVYDATPFRFS---- 944

Query: 930  NGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMV 989
                   E  + +D  G+ML   G+NY+G E LYSGV G E+T +IF G V+YQRLRHMV
Sbjct: 945  -------EENTAIDYFGKMLEAGGYNYYGTERLYSGVDGREMTADIFFGVVHYQRLRHMV 997

Query: 990  SDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHV 1049
             DK+QVRSTG ++  T QPIKGRKRGGG+RFGEMERD+L++HGAA+LL DRL   SD   
Sbjct: 998  FDKWQVRSTGAVEARTHQPIKGRKRGGGVRFGEMERDALISHGAAFLLQDRLFHNSDKTH 1057

Query: 1050 ADVCSLCGSVLTATFIHPQKRAIR--EIGGLPPARAPKKVTCHACQTSKGMETVAMPYVF 1107
              VC  CGS+L      P +R ++  E GGL    + +  TC  C  +  +  + +P+ F
Sbjct: 1058 TLVCHKCGSILA-----PLQRIVKRNETGGL----SSQPDTCRLCGDNSSVSMIEIPFSF 1108

Query: 1108 RYLAAELAAMNIKITLQLGD 1127
            ++L  EL+++NI    +L +
Sbjct: 1109 KFLVTELSSVNINARFKLNE 1128


>gi|403339388|gb|EJY68951.1| DNA-directed RNA polymerase I subunit RPA2 [Oxytricha trifallax]
          Length = 1189

 Score =  779 bits (2012), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/1128 (39%), Positives = 637/1128 (56%), Gaps = 101/1128 (8%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
             CR   ++Y+  L A +  + +D   P  +     G  PVM+++  CHL G   ++LV  
Sbjct: 120  ECRIRSLTYSAPLYATIA-RKID-NEPEEKVTVPLGDIPVMIRSSNCHLYGLTEEELVKK 177

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
             E+ AE GGYFI+NG ER+ R +I+ K+NYP++  R +F +R + +T  AV +RCVR D 
Sbjct: 178  HEDMAEFGGYFIINGNERIVRMLIMTKRNYPVAFSRPTFINRGKLFTPFAVQMRCVRDDL 237

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
             + TL L+YL +G+  +    Q +E+L+P  ++LKAL D  D +I+N L           
Sbjct: 238  FAQTLTLHYLSDGNCSMRLIYQKQEFLIPAYVILKALADVTDAQIYNKLV---------- 287

Query: 217  KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSE-SYYAVAETVI 275
            KG   +  + +RV+++L +   L L ++ QCL ++G  F+  + G+QS+ S   V    I
Sbjct: 288  KGYFKNRQIGDRVEVLLQDGNKLCLYSQNQCLAYLGSRFRMALIGVQSDMSDIDVGNFFI 347

Query: 276  RDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEK 335
            + ++FV  N+  DKFN L  M++KL+++V      DN DS  NQE+LL GHL    L EK
Sbjct: 348  QRHLFVQTNNYKDKFNTLCIMIEKLYAVVAQECELDNLDSPSNQEVLLSGHLYASLLAEK 407

Query: 336  LEDWLRKGK-KLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQ 394
            L+D L   K K+I+D    N  +    N   +KK+++   S  +G  +E  L TG L ++
Sbjct: 408  LQDLLIGAKAKIIRDLRNPNFDRQQIRNPIYMKKMIDTQVS--VGKKMEHFLATGNLISR 465

Query: 395  TGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHT 454
            T LDL                       ++HRG  FA ++TT+VRKLLPE+WGFLCPVHT
Sbjct: 466  TNLDL----------------------ISIHRGQYFAEMKTTTVRKLLPEAWGFLCPVHT 503

Query: 455  PDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPP 514
            PDG PCGLLNH+TS+C   +  D  G +    +   +   +L  +GM P         P 
Sbjct: 504  PDGGPCGLLNHITSSCIPLAKED--GLLCRQGEALKNFKSLLAQLGMNPISSDFGLIYPY 561

Query: 515  AVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV------IPDDLEVGYV------- 561
              L +LLDG ++G +      ++V  LR LK+  ++       +P  LEV Y+       
Sbjct: 562  KFLPILLDGVLLGYVDPEVAPQLVKSLRALKIQQSNTNQFYESVPKTLEVSYLAPTFPPE 621

Query: 562  -----PLSLGGA---------YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQV 607
                 P + G           +PG++L +S  +FVRPV+N+     E   +E IGP EQV
Sbjct: 622  EASDNPETQGQTNKRGTKNKFFPGIFLASSVSRFVRPVQNL-----EVGGVEWIGPLEQV 676

Query: 608  FMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTM 667
             + I C +  +  R +    TH+EI P  +LS++A+  P++D+NQSPRNMYQCQMAKQTM
Sbjct: 677  NLSIACLE--EDIRSDT---THQEIDPINVLSMIASTIPFADYNQSPRNMYQCQMAKQTM 731

Query: 668  GFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDA 727
            G       +R D K+Y +  PQ P+VRT  Y  Y   +YP+GTNA+VAV++YTGYDMEDA
Sbjct: 732  GTPYHNHPYRMDNKVYRILFPQEPLVRTENYNNYDFRQYPSGTNAVVAVISYTGYDMEDA 791

Query: 728  MILNKSSVDRGMCHGQIYQTETIDLSDD--GNKVDR------GQKLFRRNKDAKSLHSVI 779
            MI+NKS+ +RG  HG +Y++   ++++   G    +       Q  +R ++        +
Sbjct: 792  MIINKSAYERGFGHGCVYKSYIKEVNEQVMGASSSKQRYRMLNQNKYREDQKIDLKEKNL 851

Query: 780  DSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKAN 839
            D+DG+P +G  +  G P    YD      +  S K +E   V+ V + M + K      N
Sbjct: 852  DTDGIPSIGHQLTHGSPELCTYDTVLGKPKYVSFKDNEPARVENVRL-MGDEKGSANNVN 910

Query: 840  IRF--RHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMT 897
            I +  R+ RNP+IGDKFSSRHGQKGV S LWP  DMPF+  +G+ PD+IINPHAFPSRMT
Sbjct: 911  IGYTIRYERNPVIGDKFSSRHGQKGVLSVLWPQEDMPFTE-SGISPDIIINPHAFPSRMT 969

Query: 898  IAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYH 957
            I ML+ES+A K GS  G+F     F              E   +V   G+ L   G+NY+
Sbjct: 970  IGMLVESIAGKSGSNTGEFKQVKTFEKY-----------EDDDVVQYFGQELLKQGYNYY 1018

Query: 958  GVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGG 1017
            G E +YSG++G ++  +IFIG VYYQRLRHMVSDK Q R+TG  D +T QP+KGRK+ GG
Sbjct: 1019 GTETMYSGIFGDQMKVDIFIGVVYYQRLRHMVSDKSQARATGPYDVLTHQPVKGRKKQGG 1078

Query: 1018 IRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGG 1077
            IRFGEMERDSLLAHGAA+ L+DRL  CSDY    VC  CGS+++        +    I  
Sbjct: 1079 IRFGEMERDSLLAHGAAFCLNDRLLKCSDYSEGYVCKKCGSIISCHLNREILKTQNNISA 1138

Query: 1078 LPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
                   +KV C  C        V +PYV RYL  ELAAMNIK+   L
Sbjct: 1139 DMKYVVNEKVYCRVCD-EYDCRKVQLPYVLRYLTNELAAMNIKLAFHL 1185


>gi|195575535|ref|XP_002077633.1| GD23021 [Drosophila simulans]
 gi|194189642|gb|EDX03218.1| GD23021 [Drosophila simulans]
          Length = 1129

 Score =  779 bits (2012), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/1100 (38%), Positives = 648/1100 (58%), Gaps = 85/1100 (7%)

Query: 39   RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
            RQ  +SY+G  M  V   +   G        + G+ P+ML+++ C+L  A  +++V   E
Sbjct: 103  RQLHVSYSG--MCSVRLGWSVNGVEKTPINMDLGEVPIMLRSKACNLGQATPEEMVKHGE 160

Query: 99   EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
              +E GG F++ G E++ R +I+ ++N+P+ + RSS++DR + ++D  ++++ VR+D+SS
Sbjct: 161  HDSEWGGIFVIRGNEKIVRMLIMTRRNHPICVKRSSWKDRGQNFSDLGMLVQTVREDESS 220

Query: 159  VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKG 218
            ++  ++YL NG+ +  F    +   +PV ++LK L+D  D EI+N L     + Y+ ++ 
Sbjct: 221  LSNVVHYLNNGTAKFMFSHVKRLSYVPVCLILKCLMDYTDEEIYNRLV----QGYESDQY 276

Query: 219  AVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ---PVIDGLQSESYYAVAETVI 275
             V        V+ +L EVQ+ ++ T  QC   IG  F+   P +   Q +    V + ++
Sbjct: 277  YVSC------VQSMLREVQNENVYTHAQCKSFIGNLFRARFPEVPEWQPDE--DVTDFIL 328

Query: 276  RDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEK 335
            R+ + +HL++  DKF L++FM+QKLF         +N DS   QE+LLPGHL   YL E+
Sbjct: 329  RERVMIHLDNYEDKFQLIVFMIQKLFQCAQGKYKVENVDSAMMQEVLLPGHLYQKYLSER 388

Query: 336  LEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQT 395
            +E W+ + ++ +Q ++ +          A + + M +  +  +G +IE+ L TG +A++T
Sbjct: 389  VESWVSQVRRCLQKKLTSPDA---LVTSAVMTQCMRQ--AGGVGRAIESFLATGNIASRT 443

Query: 396  GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTP 455
            GL L Q +G  + AE +N +R++S FRA+HRG+ F  +RTT  R+LLP++WGF+CPVHTP
Sbjct: 444  GLGLMQNSGLVIMAENINRMRYMSHFRAIHRGSYFTTMRTTEARQLLPDAWGFICPVHTP 503

Query: 456  DGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPA 515
            DG PCGLLNH+T TC ++        +R   K+  +I + LI +GM+P   +  +     
Sbjct: 504  DGTPCGLLNHLTLTCEIS--------MRPDPKLVKAIPKHLIDMGMMPLSSR--RYLGEK 553

Query: 516  VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLF 575
            +  V LDG+ +G I  SE +K+V  LR  K+     +P  +E+G++P    G +PGLYL 
Sbjct: 554  LYVVFLDGKHLGHIHQSEADKIVDELRYGKIFGT--LPQMMEIGFIPFKKNGQFPGLYLA 611

Query: 576  TSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFP--ATHEEIH 633
            T P + +RPV N+       + +E IG  EQ++MEI          +  +P   TH E+ 
Sbjct: 612  TGPARMMRPVWNLKW-----KRVEYIGTLEQLYMEIAI------DAKEMYPDFTTHLELA 660

Query: 634  PTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIV 693
             T  +S +ANL P  D+NQSPRNMYQCQM KQTMG        +A  KLY LQTP TP+ 
Sbjct: 661  KTHFMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQTPGTPLF 720

Query: 694  RTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLS 753
            R   Y    +D++  GTNAIVAV++YTGYDMEDAMI+NK++ +RG  +G IY+T+ + L 
Sbjct: 721  RPVHYDNIQLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAYERGFAYGSIYKTKFLTL- 779

Query: 754  DDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR 813
                  D+    F R+     L   +D+DGLP+ G  +  G P    +D    +++    
Sbjct: 780  ------DKKSSYFARHPHMPELIKHLDTDGLPHPGSKLSYGSPLYCYFDGEVATYKVVKM 833

Query: 814  KGSESVFVDYV----AVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWP 869
               E   V+ +    + D+   K +     I  R  R   IGDKF+SR GQKG+CSQ +P
Sbjct: 834  DEKEDCIVESIRQLGSFDLSPKKTVA----ITLRVPRPATIGDKFASRAGQKGICSQKYP 889

Query: 870  DIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKT 929
              D+PF+  +G+ PD++ NPH FPSRMTIAM++E++A KG ++HG   DATPF  S    
Sbjct: 890  AEDLPFTE-SGLIPDIVFNPHGFPSRMTIAMMIETMAGKGAAIHGNVYDATPFRFS---- 944

Query: 930  NGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMV 989
                   E  + +D  G+ML   G+NY+G E LYSGV G E+T +IF G V+YQRLRHMV
Sbjct: 945  -------EENTAIDYFGKMLEAGGYNYYGTERLYSGVDGREMTADIFFGVVHYQRLRHMV 997

Query: 990  SDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHV 1049
             DK+QVRSTG ++  T QPIKGRKRGGG+RFGEMERD+L++HGAA+LL DRL   SD   
Sbjct: 998  FDKWQVRSTGAVEARTHQPIKGRKRGGGVRFGEMERDALISHGAAFLLQDRLFHNSDKTH 1057

Query: 1050 ADVCSLCGSVLTATFIHPQKRAIR--EIGGLPPARAPKKVTCHACQTSKGMETVAMPYVF 1107
              VC  CGS+L      P +R ++  E GGL    + +  TC  C  +  +  + +P+ F
Sbjct: 1058 TLVCHKCGSILA-----PLQRIVKRNETGGL----SSQPDTCRLCGDNSSVSMIEIPFSF 1108

Query: 1108 RYLAAELAAMNIKITLQLGD 1127
            +YL  EL+++NI    +L +
Sbjct: 1109 KYLVTELSSVNINARFKLNE 1128


>gi|195350089|ref|XP_002041574.1| GM16738 [Drosophila sechellia]
 gi|194123347|gb|EDW45390.1| GM16738 [Drosophila sechellia]
          Length = 1129

 Score =  778 bits (2009), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/1100 (38%), Positives = 646/1100 (58%), Gaps = 85/1100 (7%)

Query: 39   RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
            RQ  +SY+G  M  V   +   G        + G+ P+ML+++ C+L  A  +++V   E
Sbjct: 103  RQLHVSYSG--MCSVRLGWSVNGVEKTPINMDLGEVPIMLRSKACNLGQATPEEMVKHGE 160

Query: 99   EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
              +E GG F++ G E++ R +I+ ++N+P+ + RSS++DR + ++D  ++++ VR+D+SS
Sbjct: 161  HDSEWGGIFVIRGNEKIVRMLIMTRRNHPICVKRSSWKDRGQNFSDLGMLVQTVREDESS 220

Query: 159  VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKG 218
            ++  ++YL NG+ +  F    +   +PV ++LK L+D  D EI+N L     + Y+ ++ 
Sbjct: 221  LSNVVHYLNNGTAKFMFSHVKRLSYVPVCLILKCLMDYTDEEIYNRLV----QGYESDQY 276

Query: 219  AVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ---PVIDGLQSESYYAVAETVI 275
             V        V+ +L EVQ+ ++ T  QC   IG  F+   P +   Q +    V + ++
Sbjct: 277  YVSC------VQSMLREVQNENVYTHAQCKSFIGNLFRARFPEVPEWQPDE--DVTDFIL 328

Query: 276  RDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEK 335
            R+ + +HL+   DKF L++FM+QKLF         +N DS   QE+LLPGHL   YL E+
Sbjct: 329  RERVMIHLDTYEDKFQLIVFMIQKLFQCAQGKYKVENVDSAMMQEVLLPGHLYQKYLSER 388

Query: 336  LEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQT 395
            +E W+ + ++ +Q ++ +          A + + M +  +  +G +IE+ L TG +A++T
Sbjct: 389  VESWVSQVRRCLQKKLTSPDA---LVTSAVMTQCMRQ--AGGVGRAIESFLATGNIASRT 443

Query: 396  GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTP 455
            GL L Q +G  + AE +N +R++S FRA+HRG+ F  +RTT  R+LLP++WGF+CPVHTP
Sbjct: 444  GLGLMQNSGLVIMAENINRMRYMSHFRAIHRGSYFTTMRTTEARQLLPDAWGFICPVHTP 503

Query: 456  DGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPA 515
            DG PCGLLNH+T TC ++        +R    +  +I + LI +GM+P   +  +     
Sbjct: 504  DGTPCGLLNHLTLTCEIS--------MRPDPNLVKAIPKHLIDMGMMPLSSR--RYLGEK 553

Query: 516  VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLF 575
            +  V LDG+ +G I  SE EK+V  LR  K+     +P  +E+G++P    G +PGLYL 
Sbjct: 554  LYVVFLDGKHLGHIHQSEAEKIVDELRYGKIFGT--LPQMMEIGFIPFKKNGQFPGLYLA 611

Query: 576  TSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFP--ATHEEIH 633
            T P + +RPV N+       + +E IG  EQ++MEI          +  +P   TH E+ 
Sbjct: 612  TGPARMMRPVWNLKW-----KRVEYIGTLEQLYMEIAI------DAKEMYPDFTTHLELA 660

Query: 634  PTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIV 693
             T  +S +ANL P  D+NQSPRNMYQCQM KQTMG        +A  KLY LQTP TP+ 
Sbjct: 661  KTHFMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQTPGTPLF 720

Query: 694  RTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLS 753
            R   Y    +D++  GTNAIVAV++YTGYDMEDAMI+NK++ +RG  +G IY+T+ + L 
Sbjct: 721  RPVHYDNIQLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAYERGFAYGSIYKTKFLTL- 779

Query: 754  DDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR 813
                  D+    F R+     L   +D+DGLP+ G  +  G P    +D    +++    
Sbjct: 780  ------DKKSSYFARHPHMPELIKHLDTDGLPHPGSKLSYGSPLYCYFDGEVATYKVVKM 833

Query: 814  KGSESVFVDYV----AVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWP 869
               E   V+ +    + D+   K +     I  R  R   IGDKF+SR GQKG+CSQ +P
Sbjct: 834  DEKEDCIVESIRQLGSFDLSPKKTVA----ITLRVPRPATIGDKFASRAGQKGICSQKYP 889

Query: 870  DIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKT 929
              D+PF+  +G+ PD++ NPH FPSRMTIAM++E++A KG ++HG   DATPF  S    
Sbjct: 890  AEDLPFTE-SGLIPDIVFNPHGFPSRMTIAMMIETMAGKGAAIHGNVYDATPFRFS---- 944

Query: 930  NGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMV 989
                   E  + +D  G+ML   G+NY+G E LYSGV G E+T +IF G V+YQRLRHMV
Sbjct: 945  -------EENTAIDYFGKMLEAGGYNYYGTERLYSGVDGREMTADIFFGVVHYQRLRHMV 997

Query: 990  SDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHV 1049
             DK+QVRSTG ++  T QPIKGRKRGGG+RFGEMERD+L++HGAA+LL DRL   SD   
Sbjct: 998  FDKWQVRSTGAVEARTHQPIKGRKRGGGVRFGEMERDALISHGAAFLLQDRLFHNSDKTH 1057

Query: 1050 ADVCSLCGSVLTATFIHPQKRAIR--EIGGLPPARAPKKVTCHACQTSKGMETVAMPYVF 1107
              VC  CGS+L      P +R ++  E GGL    + +  TC  C  +  +  + +P+ F
Sbjct: 1058 TLVCHKCGSILA-----PLQRIVKRNETGGL----SSQPDTCRLCGDNSSVSMIEIPFSF 1108

Query: 1108 RYLAAELAAMNIKITLQLGD 1127
            +YL  EL+++NI    +L +
Sbjct: 1109 KYLVTELSSVNINARFKLNE 1128


>gi|17136446|ref|NP_476708.1| RNA polymerase I 135kD subunit [Drosophila melanogaster]
 gi|78099796|sp|P20028.2|RPA2_DROME RecName: Full=DNA-directed RNA polymerase I subunit RPA2; Short=RNA
            polymerase I subunit 2; AltName: Full=RPA135
 gi|7296211|gb|AAF51503.1| RNA polymerase I 135kD subunit [Drosophila melanogaster]
 gi|18447630|gb|AAL68376.1| SD02110p [Drosophila melanogaster]
 gi|220947372|gb|ACL86229.1| RpI135-PA [synthetic construct]
          Length = 1129

 Score =  778 bits (2009), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/1098 (39%), Positives = 649/1098 (59%), Gaps = 81/1098 (7%)

Query: 39   RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
            RQ  +SY+G  M  V   +   G        + G+ P+ML+++ C+L  A  +++V   E
Sbjct: 103  RQLHVSYSG--MCSVRLGWSVNGVQKTPINMDLGEVPIMLRSKACNLGQATPEEMVKHGE 160

Query: 99   EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
              +E GG F++ G E++ R +I+ ++N+P+ + RSS++DR + ++D  ++++ VR+D+SS
Sbjct: 161  HDSEWGGIFVIRGNEKIVRMLIMTRRNHPICVKRSSWKDRGQNFSDLGMLVQTVREDESS 220

Query: 159  VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKG 218
            ++  ++YL NG+ +  F    +   +PV ++LK L+D  D EI+N L     + Y+ ++ 
Sbjct: 221  LSNVVHYLNNGTAKFMFSHVKRLSYVPVCLILKCLMDYTDEEIYNRLV----QGYESDQY 276

Query: 219  AVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ---PVIDGLQSESYYAVAETVI 275
             V        V+ +L EVQ+ ++ T  QC   IG  F+   P +   Q +    V + ++
Sbjct: 277  YVSC------VQAMLREVQNENVYTHAQCKSFIGNLFRARFPEVPEWQPDD--DVTDFIL 328

Query: 276  RDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEK 335
            R+ + +HL+   DKF L++FM+QKLF         +N DS   QE+LLPGHL   YL E+
Sbjct: 329  RERVMIHLDTYEDKFQLIVFMIQKLFQCAQGKYKVENVDSAMMQEVLLPGHLYQKYLSER 388

Query: 336  LEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQT 395
            +E W+ + ++ +Q ++ +          A + + M +  +  +G +IE+ L TG +A++T
Sbjct: 389  VESWVSQVRRCLQKKLTSPDA---LVTSAVMTQCMRQ--AGGVGRAIESFLATGNIASRT 443

Query: 396  GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTP 455
            GL L Q +G  + AE +N +R++S FRA+HRG+ F  +RTT  R+LLP++WGF+CPVHTP
Sbjct: 444  GLGLMQNSGLVIMAENINRMRYMSHFRAIHRGSYFTTMRTTEARQLLPDAWGFICPVHTP 503

Query: 456  DGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPA 515
            DG PCGLLNH+T TC ++        +R   K+  +I + LI +GM+P   +  +     
Sbjct: 504  DGTPCGLLNHLTLTCEIS--------MRPDPKLVKAIPKHLIDMGMMPLSNR--RYLGEK 553

Query: 516  VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLF 575
            +  V LDG+ +G I  SE EK+V  LR  K+     +P  +E+G++P    G +PGLY+ 
Sbjct: 554  LYVVFLDGKHLGHIHQSEAEKIVDELRYGKIFGT--LPQMMEIGFIPFKKNGQFPGLYIA 611

Query: 576  TSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFP--ATHEEIH 633
            T P + +RPV N+       + +E IG  EQ++MEI          +  +P   TH E+ 
Sbjct: 612  TGPARMMRPVWNLKW-----KRVEYIGTLEQLYMEIAI------DAKEMYPDFTTHLELA 660

Query: 634  PTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIV 693
             T  +S +ANL P  D+NQSPRNMYQCQM KQTMG        +A  KLY LQTP TP+ 
Sbjct: 661  KTHFMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQTPGTPLF 720

Query: 694  RTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLS 753
            R   Y    +D++  GTNAIVAV++YTGYDMEDAMI+NK++ +RG  +G IY+T+ + L 
Sbjct: 721  RPVHYDNIQLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAYERGFAYGSIYKTKFLTL- 779

Query: 754  DDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR 813
                  D+    F R+     L   +D+DGLP+ G  +  G P    +D    +++    
Sbjct: 780  ------DKKSSYFARHPHMPELIKHLDTDGLPHPGSKLSYGSPLYCYFDGEVATYKVVKM 833

Query: 814  KGSESVFVDYVAVDMKNSKNL-PQK-ANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDI 871
               E   V+  ++    S +L P+K   I  R  R   IGDKF+SR GQKG+CSQ +P  
Sbjct: 834  DEKEDCIVE--SIRQLGSFDLSPKKMVAITLRVPRPATIGDKFASRAGQKGICSQKYPAE 891

Query: 872  DMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNG 931
            D+PF+  +G+ PD++ NPH FPSRMTIAM++E++A KG ++HG   DATPF  S      
Sbjct: 892  DLPFTE-SGLIPDIVFNPHGFPSRMTIAMMIETMAGKGAAIHGNVYDATPFRFS------ 944

Query: 932  DTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSD 991
                 E  + +D  G+ML   G+NY+G E LYSGV G E+T +IF G V+YQRLRHMV D
Sbjct: 945  -----EENTAIDYFGKMLEAGGYNYYGTERLYSGVDGREMTADIFFGVVHYQRLRHMVFD 999

Query: 992  KFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVAD 1051
            K+QVRSTG ++  T QPIKGRKRGGG+RFGEMERD+L++HGAA+LL DRL   SD     
Sbjct: 1000 KWQVRSTGAVEARTHQPIKGRKRGGGVRFGEMERDALISHGAAFLLQDRLFHNSDKTHTL 1059

Query: 1052 VCSLCGSVLTATFIHPQKRAIR--EIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRY 1109
            VC  CGS+L      P +R ++  E GGL    + +  TC  C  +  +  + +P+ F+Y
Sbjct: 1060 VCHKCGSILA-----PLQRIVKRNETGGL----SSQPDTCRLCGDNSSVSMIEIPFSFKY 1110

Query: 1110 LAAELAAMNIKITLQLGD 1127
            L  EL+++NI    +L +
Sbjct: 1111 LVTELSSVNINARFKLNE 1128


>gi|198473780|ref|XP_001356442.2| GA17896 [Drosophila pseudoobscura pseudoobscura]
 gi|198138104|gb|EAL33506.2| GA17896 [Drosophila pseudoobscura pseudoobscura]
          Length = 1126

 Score =  777 bits (2006), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/1097 (39%), Positives = 642/1097 (58%), Gaps = 83/1097 (7%)

Query: 39   RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
            RQ   SY+G  M  V   +   G        + G+ PVML+++ C+L     Q++V   E
Sbjct: 100  RQLHASYSG--MCSVRLAWSVNGLQKTPINMDLGEVPVMLRSKACNLGKGTPQEMVKHGE 157

Query: 99   EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
               E GG F++ G E++ R ++L ++N+P+ + RS+++DR + ++D  ++++ VR D+ S
Sbjct: 158  HDTEWGGIFVIRGNEKIVRMLVLVRRNHPICVKRSTWKDRGQNFSDLGIMVQTVRDDECS 217

Query: 159  VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKG 218
             +  L+YL NG+ R  F    +   +PV ++LK L+D  D EI+N L     + Y+K++ 
Sbjct: 218  FSNVLHYLNNGTARFMFSHIKRLSYVPVCLILKCLMDYTDEEIYNRLV----QGYEKDQY 273

Query: 219  AVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQP---VIDGLQSESYYAVAETVI 275
             V S      V+ +L +V +  + T  QC   IG  F+    V+   Q +    V + ++
Sbjct: 274  YVSS------VQTMLRDVHNEGVYTHAQCRSFIGTLFRSRFNVVPEWQPDE--DVTDFIL 325

Query: 276  RDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEK 335
            R+ I VHL+   +KF L++FM+QKLF         +N DS   QE+LLPGHL   YL E+
Sbjct: 326  RERILVHLDTYEEKFQLIVFMVQKLFQCAQGKHKVENVDSAMMQEVLLPGHLYQKYLGER 385

Query: 336  LEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQT 395
            +E+W+   ++++Q ++            + + + M +  +  +G SIE+ L TG +A+ T
Sbjct: 386  IENWVAMVRRVLQKKLSTPD---SLLTSSILTQSMRQ--AGGVGKSIESFLATGNIASNT 440

Query: 396  GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTP 455
            GL L Q +G  + AE +N +R++S FRA+HRG+ F  +RTT  R+LLP++WGF+CPVHTP
Sbjct: 441  GLGLMQNSGLVIMAENINRMRYMSHFRAIHRGSYFTTMRTTEARQLLPDAWGFICPVHTP 500

Query: 456  DGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPA 515
            DG PCGLLNH+T TC ++   D         K+  +I   LI +GM   LP   +  P +
Sbjct: 501  DGTPCGLLNHLTLTCEISKRPDP--------KLVQAIPPKLIEMGM---LPLSCQRNPDS 549

Query: 516  VL-SVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYL 574
             +  VLLDG+ +G I  S+  K+V  LR  K++ A  +P  +E+G++P    G +PGLYL
Sbjct: 550  KMYVVLLDGKHLGHIFQSDACKIVEDLRYEKITGA--VPQMMEIGFIPFKKNGQFPGLYL 607

Query: 575  FTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFP--ATHEEI 632
             T P + +RPV NI       + +E IG  EQ++MEI          +  +P   TH E+
Sbjct: 608  STGPARMMRPVWNIKW-----KQVEYIGTLEQLYMEIAIDP------KEMYPDFTTHLEL 656

Query: 633  HPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPI 692
              T  +S +ANL P  D+NQSPRNMYQCQM KQTMG        +A  KLY LQTP TP+
Sbjct: 657  AKTHFMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQTPGTPL 716

Query: 693  VRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDL 752
             R   Y    +D++  GTNAIVAV++YTGYDMEDAMI+NKS+ +RG  +G IY+++ + L
Sbjct: 717  FRPVHYDNIQLDDFAMGTNAIVAVISYTGYDMEDAMIINKSAYERGFAYGSIYKSKFVQL 776

Query: 753  SDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNS 812
                    +    F R+     L   +D+DGLP+ G  +  G P    +D    +++   
Sbjct: 777  P-------KKSSYFARHPHMPELAKYLDTDGLPHPGAKLTFGCPLYCYFDGEVATYKVEK 829

Query: 813  RKGSESVFVDYVAVDMKNSKNLPQKAN--IRFRHTRNPIIGDKFSSRHGQKGVCSQLWPD 870
                E  FVD  ++    S +L  K    I  R  R   IGDKF+SR GQKG+CSQ +P 
Sbjct: 830  MDEKEECFVD--SIRQLGSFDLTPKKTVCITLRVPRPATIGDKFASRAGQKGICSQKYPA 887

Query: 871  IDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTN 930
             D+PF+  +GM PD++ NPH FPSRMTIAM++E++A K  ++HG   DATPF  S K T 
Sbjct: 888  EDLPFTE-SGMIPDIVFNPHGFPSRMTIAMMIETMAGKSAAVHGGVYDATPFRFSEKNT- 945

Query: 931  GDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVS 990
                       +D  G+ML   G+NY+G E LYSGV G E+T +IF G V+YQRLRHMV 
Sbjct: 946  ----------AIDYFGKMLEAGGYNYYGTERLYSGVDGREMTADIFFGVVHYQRLRHMVF 995

Query: 991  DKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVA 1050
            DK+QVRSTGT++  T+QPIKGRKRGGG+RFGEMERD+L++HGAA+LL DRL   SD    
Sbjct: 996  DKWQVRSTGTVEARTQQPIKGRKRGGGVRFGEMERDALISHGAAFLLQDRLFHNSDKTHT 1055

Query: 1051 DVCSLCGSVLTATFIHPQKRAIR--EIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFR 1108
             VC  CGS+L+     P ++ ++  E GGL    + K  TC  C  S  +  + +P+ F+
Sbjct: 1056 LVCHSCGSILS-----PLQQIVKRNERGGL----SSKPQTCRLCGDSSSVSMIEIPFSFK 1106

Query: 1109 YLAAELAAMNIKITLQL 1125
            +L  EL+++NI    +L
Sbjct: 1107 FLVTELSSVNINARFKL 1123


>gi|8474|emb|CAA35185.1| RNA polymerase 3, second largest subunit [Drosophila melanogaster]
          Length = 1129

 Score =  776 bits (2005), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/1100 (38%), Positives = 648/1100 (58%), Gaps = 85/1100 (7%)

Query: 39   RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
            RQ  +SY+G  M  V   +   G        + G+ P+ML+++ C+L  A  +++V   E
Sbjct: 103  RQLHVSYSG--MCSVRLGWSVNGVQKTPINMDLGEVPIMLRSKACNLGQATPEEMVKHGE 160

Query: 99   EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
              +E GG F++ G E++ R +I+ ++N+P+ + RSS++DR + ++D  ++++ VR+D+SS
Sbjct: 161  HDSEWGGIFVIRGNEKIVRMLIMTRRNHPICVKRSSWKDRGQNFSDLGMLVQTVREDESS 220

Query: 159  VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKG 218
            ++  ++YL NG+ +  F    +   +PV ++LK L+D  D EI+N L     + Y+ ++ 
Sbjct: 221  LSNVVHYLNNGTAKFMFSHVKRLSYVPVCLILKCLMDYTDEEIYNRLV----QGYESDQY 276

Query: 219  AVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ---PVIDGLQSESYYAVAETVI 275
             V        V+ +L EVQ+ ++ T  QC   IG  F+   P +   Q +    V + ++
Sbjct: 277  YVSC------VQAMLREVQNENVYTHAQCKSFIGNLFRARFPEVPEWQPDD--DVTDFIL 328

Query: 276  RDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEK 335
            R+ + +HL+   DKF L++FM+QKLF         +N DS   QE+LLPGHL   YL E+
Sbjct: 329  RERVMIHLDTYEDKFQLIVFMIQKLFQCAQGKYKVENVDSSMMQEVLLPGHLYQKYLSER 388

Query: 336  LEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQT 395
            +E W+ + ++ +Q ++ +          A + + M +  +  +G +IE+ L TG +A++T
Sbjct: 389  VESWVSQVRRCLQKKLTSPDA---LVTSAVMTQCMRQ--AGGVGRAIESFLATGNIASRT 443

Query: 396  GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTP 455
            GL L Q +G  + AE +N +R++S FRA+HRG+ F  +RTT  R+LLP++WGF+CPVHTP
Sbjct: 444  GLGLMQNSGLVIMAENINRMRYMSHFRAIHRGSYFTTMRTTEARQLLPDAWGFICPVHTP 503

Query: 456  DGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPA 515
            DG PCGLLNH+T TC ++        +R   K+  +I + LI +GM+P   +  +     
Sbjct: 504  DGTPCGLLNHLTLTCEIS--------MRPDPKLVKAIPKHLIDMGMMPLSNR--RYLGEK 553

Query: 516  VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLF 575
            +  V LDG+ +G I  SE EK+V  LR  K+     +P  +E+G++P    G +PGLY+ 
Sbjct: 554  LYVVFLDGKHLGHIHQSEAEKIVDELRYGKIFGT--LPQMMEIGFIPFKKNGQFPGLYIA 611

Query: 576  TSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFP--ATHEEIH 633
            T P + +RPV N+       + +E IG  EQ++MEI          +  +P   TH E+ 
Sbjct: 612  TGPARLMRPVWNLKW-----KRVEYIGTLEQLYMEIAI------DAKEMYPDFTTHLELA 660

Query: 634  PTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIV 693
             T  +S +ANL P  D+NQSPRNMYQCQM KQTMG        +A  KLY LQTP TP+ 
Sbjct: 661  KTHFMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQTPGTPLF 720

Query: 694  RTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLS 753
            R   Y    +D++  GTNAIVAV++YTGYDMEDAMI+NK++ +RG  +G IY+T+ + L 
Sbjct: 721  RPVHYDIIQLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAYERGFAYGSIYKTKFLTL- 779

Query: 754  DDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR 813
                  D+    F R+     L   +D+DGLP+ G  +  G P    +D    +++    
Sbjct: 780  ------DKKSSYFARHPHMPELIKHLDTDGLPHPGSKLSYGSPLYCYFDGEVATYKVVKM 833

Query: 814  KGSESVFVDYV----AVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWP 869
               E   V+ +    + D+  +K +     I  R  R   IGDKF+SR GQKG+CSQ +P
Sbjct: 834  DEKEDCIVESIRQLGSFDLSPTKMVA----ITLRVPRPATIGDKFASRAGQKGICSQKYP 889

Query: 870  DIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKT 929
              D+PF+  +G+ PD++ NPH FPSRMTIAM++E++A KG ++HG   DATPF  S    
Sbjct: 890  AEDLPFTE-SGLIPDIVFNPHGFPSRMTIAMMIETMAGKGAAIHGNVYDATPFRFS---- 944

Query: 930  NGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMV 989
                   E  + +D  G+ML   G+NY+G E LYSGV G E+T +IF G V+YQRLRHMV
Sbjct: 945  -------EENTAIDYFGKMLEAGGYNYYGTERLYSGVDGREMTADIFFGVVHYQRLRHMV 997

Query: 990  SDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHV 1049
             DK+QVRSTG ++  T QPIKGRKRGGG+RFGEMERD+L++HGAA+LL DRL   SD   
Sbjct: 998  FDKWQVRSTGAVEARTHQPIKGRKRGGGVRFGEMERDALISHGAAFLLQDRLFHNSDKTH 1057

Query: 1050 ADVCSLCGSVLTATFIHPQKRAIR--EIGGLPPARAPKKVTCHACQTSKGMETVAMPYVF 1107
              VC  CGS+L      P +R ++  E GGL    + +  TC  C  +  +  + +P+ F
Sbjct: 1058 TLVCHKCGSILA-----PLQRIVKRNETGGL----SSQPDTCRLCGDNSSVSMIEIPFSF 1108

Query: 1108 RYLAAELAAMNIKITLQLGD 1127
            +YL  EL+++NI    +L +
Sbjct: 1109 KYLVTELSSVNINARFKLNE 1128


>gi|195388314|ref|XP_002052825.1| GJ17773 [Drosophila virilis]
 gi|194149282|gb|EDW64980.1| GJ17773 [Drosophila virilis]
          Length = 1122

 Score =  774 bits (1999), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/1101 (39%), Positives = 647/1101 (58%), Gaps = 91/1101 (8%)

Query: 39   RQAKISYTGKLMADVEFQYLD-AGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            RQ   SY+G     + +   D   +P+     + G+ PVML++R C+L  A  Q +V   
Sbjct: 96   RQLHASYSGVCSVRLGWSVNDLEKTPI---NMDLGEVPVMLRSRACNLGKATPQDMVKHG 152

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            E  +E GG F++ G E++ R +I+ ++N+P+ + RSS++DR   +++  V+++ VR D+ 
Sbjct: 153  EHDSEWGGIFVIRGNEKIVRMLIMTRRNHPICVKRSSWKDRGHNFSELGVMVQTVRDDEL 212

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            S+T  L+YL NG+ R  F    +   +PV ++LK L+D  D +I+N    C  + Y+ ++
Sbjct: 213  SLTNVLHYLNNGTARFMFSHVKRLSYVPVCLILKCLMDYTDEQIYN----CLVQGYESDQ 268

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIG----EHFQPVIDGLQSESYYAVAET 273
              +        V+ +L +VQ+  + T  QC   IG      F  V D L  E   AV E 
Sbjct: 269  YYLTC------VQSMLRDVQNEGVYTSAQCRSFIGTLFRSRFPEVPDWLPDE---AVTEY 319

Query: 274  VIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLK 333
            ++R+ I VHL  N +KF L++FM+QKLF         +N DS   QE+LLPGHL   YL 
Sbjct: 320  IMRERIMVHLATNEEKFQLIVFMVQKLFQCAQGKYKVENVDSAMMQEVLLPGHLYQKYLG 379

Query: 334  EKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEK--NPSKQIGTSIETMLKTGRL 391
            E++E WL + ++ +        KK +  +      +M +    +  +G ++E+ L TG +
Sbjct: 380  ERIEMWLLQLRRCLL-------KKLNAPDSLASSSIMTQCMRQAGGVGRAMESFLATGNV 432

Query: 392  ATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCP 451
            A++TGL L Q +G  + AE +N +R++S FRA+HRG+ F  +RTT  R+LLP++WGF+CP
Sbjct: 433  ASRTGLGLMQSSGLVIMAENINRMRYMSHFRAIHRGSYFTTMRTTEARQLLPDAWGFICP 492

Query: 452  VHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKS 511
            VHTPDG PCGLLNH+T TC ++   D         K+  +I  +L+ +GM+P    L + 
Sbjct: 493  VHTPDGTPCGLLNHLTLTCEISKRPDP--------KLVQAIPAMLLEMGMMP----LSQQ 540

Query: 512  GPP--AVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAY 569
            G P   +  V LDG+ +G I  +E  K+V  LR  K++    +P+ +E+G++P    G +
Sbjct: 541  GQPDAKLYVVFLDGKHLGHIFQTEATKMVEDLRYAKITGQ--VPEMMEIGFIPYKKNGQF 598

Query: 570  PGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFP--A 627
            PGL+L T P + +RPV N+       Q +E IG  EQ++MEI   +      +  +P   
Sbjct: 599  PGLFLSTGPTRMMRPVWNLKW-----QRVEYIGTLEQLYMEIAIDE------KEMYPDFT 647

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH E+  T  +S +ANL P  D+NQSPRNMYQCQM KQTMG        +A  KLY LQT
Sbjct: 648  THLELSKTHFMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQT 707

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
            P TP+ R   Y    +D++  GTNAIVAV++YTGYDMEDAMI+NKS+ +RG  +G IY++
Sbjct: 708  PATPLFRPVHYDNIQLDDFAMGTNAIVAVISYTGYDMEDAMIINKSAYERGFAYGSIYKS 767

Query: 748  ETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNS 807
            + + L+       + Q  F R+     L   +D+DGLP+ G  +  G P    +D   ++
Sbjct: 768  KFVQLA-------KKQSYFARHPHMPELIKHLDTDGLPHPGTKLSYGSPLYCYFDGEVST 820

Query: 808  WRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQ 866
            ++       E   VD V   + + + +P+K   I  R  R   IGDKF+SR GQKG+CSQ
Sbjct: 821  FKVVKMDEKEDCVVDSVR-QLGSFELMPRKTVCITLRVARPATIGDKFASRAGQKGICSQ 879

Query: 867  LWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSV 926
             +P  D+PF+  +G+ PD++ NPH FPSRMTIAM++E++A K  ++HG   DATPF  S 
Sbjct: 880  KYPAEDLPFTE-SGLIPDIVFNPHGFPSRMTIAMMIETMAGKSAAVHGGVYDATPFRFS- 937

Query: 927  KKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLR 986
                      E  + +D  G+ML   G+NY+G E LYSGV G E+T +IF G V+YQRLR
Sbjct: 938  ----------EDNTAIDYFGKMLEAGGYNYYGTERLYSGVDGREMTADIFFGVVHYQRLR 987

Query: 987  HMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSD 1046
            HMV DK+QVRSTG ++  T QPIKGRKRGGG+RFGEMERD+L++HGAA+LL DRL   SD
Sbjct: 988  HMVFDKWQVRSTGAVEARTNQPIKGRKRGGGVRFGEMERDALISHGAAFLLQDRLFHNSD 1047

Query: 1047 YHVADVCSLCGSVLTATFIHPQKRAIR--EIGGLPPARAPKKVTCHACQTSKGMETVAMP 1104
                 VC  CGS+L      P ++ I+  E GGL  +  P   TC  C  S G+  + +P
Sbjct: 1048 KTHTLVCHKCGSILA-----PLRQIIKRNETGGL--SSMPD--TCRLCGDSSGVSMIEIP 1098

Query: 1105 YVFRYLAAELAAMNIKITLQL 1125
            + F++L  EL+++NI    +L
Sbjct: 1099 FSFKFLVTELSSVNINARFKL 1119


>gi|194766529|ref|XP_001965377.1| GF20648 [Drosophila ananassae]
 gi|190617987|gb|EDV33511.1| GF20648 [Drosophila ananassae]
          Length = 1129

 Score =  774 bits (1998), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/1097 (39%), Positives = 642/1097 (58%), Gaps = 79/1097 (7%)

Query: 39   RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
            RQ   SY+G  M  V   Y   G P      + G+ P+ML+++ C+L  A  +++V   E
Sbjct: 103  RQLHASYSG--MCSVRLGYSVNGVPSAPINADLGEVPIMLRSKACNLGKASPKEMVKHGE 160

Query: 99   EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
              +E GG F++ G E++ R +I+ ++N+P+ + RSS++DR + ++D  V+++ VR+D++S
Sbjct: 161  HDSEWGGIFVIRGNEKIVRMLIMTRRNHPICIKRSSWKDRGQNFSDIGVLVQTVREDETS 220

Query: 159  VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKG 218
                L+YL NG+ +  F    +   +PV ++LK L+D  D EI+N L     + Y+ ++ 
Sbjct: 221  FNNVLHYLNNGTAKFMFSHVKRLSYVPVCLILKCLMDYTDEEIYNRLI----QGYESDQY 276

Query: 219  AVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ---PVIDGLQSESYYAVAETVI 275
             +        V+ +L EVQ+ ++ T  QC   IG  F+   P +   Q +    V + ++
Sbjct: 277  YLSC------VQSMLREVQNENVYTHSQCRSFIGNLFRSRFPEVPEWQPDE--DVTDFIL 328

Query: 276  RDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEK 335
            ++ I VHL+   DKF L++FM+QKLF         +N DS   QE+L+PG L   Y+ E+
Sbjct: 329  KERIMVHLDSYEDKFQLIVFMVQKLFQCAQGKQKVENVDSAMMQEVLVPGILYQKYIGER 388

Query: 336  LEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQT 395
            +E W+ + ++ +Q ++          N A + + M +  +  +G S+E+ L TG + ++T
Sbjct: 389  IETWMMQVRRCLQKKLTTPD---SLVNSALMTQCMRQ--AGGVGRSMESFLATGNIVSRT 443

Query: 396  GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTP 455
            GL L Q +G  + AE +N +R++S FRA+HRG+ F  +RTT  R+LLP++WGF+CPVHTP
Sbjct: 444  GLGLMQNSGLVIMAENINRMRYMSHFRAIHRGSYFTTMRTTEARQLLPDAWGFICPVHTP 503

Query: 456  DGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPA 515
            DG PCGLLNH+T TC ++   D         ++  +I   LI +GM   LP   +  P A
Sbjct: 504  DGTPCGLLNHLTLTCEISKRPDP--------ELVKAIPSKLIEMGM---LPLSNRRDPDA 552

Query: 516  VLSVL-LDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYL 574
             L V+ LDGR +G I  S+  K+V  LR  K+  +  +P  +E+G++P    G +PGL+L
Sbjct: 553  KLYVVFLDGRHLGHIHQSDATKIVEELRHGKIFGS--LPQMMEIGFIPFKKNGQFPGLFL 610

Query: 575  FTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFP--ATHEEI 632
             T P + +RPV N+       + +E IG  EQ++MEI          +  +P   TH E+
Sbjct: 611  ATGPARMMRPVWNLKW-----KKVEYIGTLEQLYMEIAIDP------KEMYPDFTTHLEL 659

Query: 633  HPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPI 692
              T  +S +ANL P  D+NQSPRNMYQCQM KQTMG        +A  KLY LQTP TP+
Sbjct: 660  AKTHFMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQTPGTPL 719

Query: 693  VRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDL 752
             R   Y    +D++  GTNAIVAV++YTGYDMEDAMI+NK++ +RG  +G IY+T+ + L
Sbjct: 720  FRPVHYDNIKLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAYERGFAYGSIYKTKFVSL 779

Query: 753  SDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNS 812
                   D+    F R+     L   +D+DGLP+ G  +  G P    +D    +++   
Sbjct: 780  -------DKKSSYFCRHPHMPELVKYLDTDGLPHPGSKLSYGNPLYCYFDGEVATYKVVK 832

Query: 813  RKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDID 872
                E  FVD +        ++ +   I  R  R   IGDKF+SR GQKG+CSQ +P  D
Sbjct: 833  MDEKEDCFVDSIRQLGSFDVSVKKMVAITLRVPRPATIGDKFASRAGQKGICSQKYPAED 892

Query: 873  MPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGD 932
            +PF+  +G+ PD++ NPH FPSRMTIAM++E++A K  ++HG   DATPF  S       
Sbjct: 893  LPFTE-SGLIPDIVFNPHGFPSRMTIAMMIETMAGKSAAMHGNVYDATPFRFS------- 944

Query: 933  TGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDK 992
                E  + +D  G+ML   G+NY+G E LYSGV G E+T +IF G V+YQRLRHMV DK
Sbjct: 945  ----EENTAIDYFGKMLEAGGYNYYGTERLYSGVDGREMTADIFFGVVHYQRLRHMVFDK 1000

Query: 993  FQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADV 1052
            +QVRSTG ++  T QPIKGRKRGGG+RFGEMERD+L++HGAA+LL DRL   SD     V
Sbjct: 1001 WQVRSTGAVEARTHQPIKGRKRGGGVRFGEMERDALISHGAAFLLQDRLFHNSDKTHTLV 1060

Query: 1053 CSLCGSVLTATFIHPQKRAIR--EIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYL 1110
            C  CGS+L      P ++ ++  E GGL  +  PK  TC  C  S  +  + +P+ F++L
Sbjct: 1061 CHKCGSILA-----PLQQIVKRNETGGL--SAHPK--TCRLCGDSSAVSMIEIPFSFKFL 1111

Query: 1111 AAELAAMNIKITLQLGD 1127
              EL+++NI    +L +
Sbjct: 1112 VTELSSVNINARFKLNE 1128


>gi|195032695|ref|XP_001988542.1| GH11221 [Drosophila grimshawi]
 gi|193904542|gb|EDW03409.1| GH11221 [Drosophila grimshawi]
          Length = 1125

 Score =  772 bits (1994), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/1097 (39%), Positives = 645/1097 (58%), Gaps = 83/1097 (7%)

Query: 39   RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
            RQ   SY+G+    + +   D     +    + G+ P+ML+++ C+L  A   ++V   E
Sbjct: 99   RQLHASYSGQCSLRLGWSVNDLDKSAIN--VDLGEVPIMLRSQACNLGQASPTEMVKHGE 156

Query: 99   EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
              +E GG F++ G E++ R +I+ ++N+P+ + RSS++DR   +++  V+++ VR D+ S
Sbjct: 157  HDSEWGGIFVIRGNEKIVRMLIMTRRNHPICVKRSSWKDRGHNFSELGVMVQTVRDDELS 216

Query: 159  VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKG 218
            +T  L+YL NG+ R  F    +   +PV ++LK L+D  D +I+N    C  + Y+ ++ 
Sbjct: 217  LTNTLHYLNNGTARFMFSHMKRLSYVPVCLILKCLMDYTDEQIYN----CLVQGYESDQY 272

Query: 219  AVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIG----EHFQPVIDGLQSESYYAVAETV 274
             +        V+ +L +VQ+  + T  QC   IG      F  V + L  E   AV E +
Sbjct: 273  YLTC------VQSMLRDVQNEGVYTSAQCRSFIGTLFRSRFPEVPEWLPDE---AVTEFI 323

Query: 275  IRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKE 334
            +R+ I VHL  N +KF L++FM+QKLF         +N DS   QE+LLPGHL   YL E
Sbjct: 324  LRERIMVHLQTNEEKFQLIVFMVQKLFQCAQGKFKVENVDSAMMQEVLLPGHLYQKYLGE 383

Query: 335  KLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQ 394
            ++E WL + +K +  ++          + + + + M +  +  +G SIE+ L TG +A++
Sbjct: 384  RIEMWLMQLRKCLLKKLSTAD---SLVSSSIMTQCMRQ--AGGVGRSIESFLATGNVASR 438

Query: 395  TGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHT 454
            +GL L Q +G  + AE +N +R++S FRA+HRG+ F  +RTT  R+LLP++WGF+CPVHT
Sbjct: 439  SGLGLMQSSGLVIMAENINRMRYMSHFRAIHRGSYFTTMRTTEARQLLPDAWGFICPVHT 498

Query: 455  PDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPP 514
            PDG PCGLLNH+T TC ++   D         K+   I  +L  +GM   LP   +  P 
Sbjct: 499  PDGTPCGLLNHLTLTCEISKRPDP--------KLVQGIPALLFEMGM---LPLTQQDHPD 547

Query: 515  AVLSVL-LDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLY 573
            A L V+ LDG+ +G I  +E +K+V  LR  K++    +P  +E+G++P    G +PGL+
Sbjct: 548  AKLYVVFLDGKHLGHIFQTEADKIVEDLRYAKITGQ--VPKMMEIGFIPFKKNGQFPGLF 605

Query: 574  LFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFP--ATHEE 631
            L T P + +RPV N+       + +E IG  EQ++MEI   +      +  +P   TH E
Sbjct: 606  LSTGPARMMRPVWNLKW-----KQVEYIGTLEQLYMEIAIDE------KEMYPDFTTHLE 654

Query: 632  IHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTP 691
            +  T  +S +ANL P  D+NQSPRNMYQCQM KQTMG        +A  KLY LQTP TP
Sbjct: 655  LSKTHFMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQTPATP 714

Query: 692  IVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETID 751
            + R   Y    +D++  GTNAIVAV++YTGYDMEDAMI+NK++ +RG  +G IY+++ + 
Sbjct: 715  LFRPVHYDNIQLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAYERGFAYGSIYKSKFVQ 774

Query: 752  LSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTN 811
            L+       + Q  F R+ +   L   +D+DGLP  G  +  G P+   +D   ++++  
Sbjct: 775  LA-------KKQSYFARHPNMPELIKYLDTDGLPQPGAKLSYGCPFYCYFDGEVSTFKVV 827

Query: 812  SRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPD 870
                 E   VD V   + + +  P+K   I  R  R   IGDKF+SR GQKG+CSQ +P 
Sbjct: 828  KMDEKEDCIVDSVR-QLGSFELTPRKTVCITLRVARPATIGDKFASRAGQKGICSQKYPA 886

Query: 871  IDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTN 930
             D+PF+  +G+ PD++ NPH FPSRMTIAM++E++A K  ++HG   DATPF  S     
Sbjct: 887  EDLPFTE-SGLIPDIVFNPHGFPSRMTIAMMIETMAGKNAAVHGGVYDATPFRFS----- 940

Query: 931  GDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVS 990
                  E  + +D  G+ML   G+NY+G E LYSGV G E+T +IF G V+YQRLRHMV 
Sbjct: 941  ------EDNTAIDYFGKMLEAGGYNYYGTERLYSGVDGREMTADIFFGVVHYQRLRHMVF 994

Query: 991  DKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVA 1050
            DK+QVRSTG ++  T QPIKGRKRGGG+RFGEMERD+L++HGAA+LL DRL   SD    
Sbjct: 995  DKWQVRSTGAVEARTNQPIKGRKRGGGVRFGEMERDALISHGAAFLLQDRLFHNSDKTHT 1054

Query: 1051 DVCSLCGSVLTATFIHPQKRAIR--EIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFR 1108
             VC  CGS+L      P K+ I+  E GGL  +  P   TC  C  S G+  + +P+ F+
Sbjct: 1055 LVCHKCGSILA-----PLKQIIKRNEAGGL--SSMPD--TCRLCGDSSGVSMIEIPFSFK 1105

Query: 1109 YLAAELAAMNIKITLQL 1125
            +L  EL+++NI    +L
Sbjct: 1106 FLVTELSSVNINARFKL 1122


>gi|449269621|gb|EMC80379.1| DNA-directed RNA polymerase I subunit RPA2, partial [Columba livia]
          Length = 1022

 Score =  770 bits (1987), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/1064 (40%), Positives = 608/1064 (57%), Gaps = 69/1064 (6%)

Query: 71   FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSM 130
             G  P+M+K++ C+L     Q+L+   EE  EMGGYFI+NGLE+V R +I+P++N P++M
Sbjct: 18   LGYIPIMVKSKLCNLYNLSPQELIQHHEEEEEMGGYFIINGLEKVVRMLIMPRRNIPLAM 77

Query: 131  VRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVL 190
             R  +++R  G+T+  VV+ C++ + +++ + L+YL NG V + F  Q + + LP+G  L
Sbjct: 78   ERHKWKNRGPGFTEYGVVMHCIKDEHTAINMNLHYLENGCVMVNFIFQKELFFLPLGFAL 137

Query: 191  KALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQH 250
            KALV+  D +I   L           KG  G       V  ++  V D    T+   L++
Sbjct: 138  KALVNFPDYQIVEELV----------KGKEGDTFYMNCVTEMMRAVVDAGCLTQENVLEY 187

Query: 251  IGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVS 310
            +G+ F+  ++  +  S    A+ ++   I +HL +  +KF LL  M +KL++      + 
Sbjct: 188  LGKSFRIKLNLPEWYSDEQAADFILNKCICIHLTNRTEKFYLLCMMTRKLYAFAKGECME 247

Query: 311  DNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVM 370
            DNPDSL NQE+L PG L  ++LKE+LE WL+  K +++   E      +   L     + 
Sbjct: 248  DNPDSLMNQEVLTPGQLFLMFLKERLESWLQSVKFVLEKRAEKADVSINADGLVKAFSL- 306

Query: 371  EKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASF 430
                +  +    E +L TG L ++TGL + Q +G  V  ++LNF+R++S FR +HRGA+F
Sbjct: 307  ----ATDLTKPFEYLLATGNLRSKTGLGMLQDSGLCVVGDKLNFIRYLSHFRCIHRGAAF 362

Query: 431  AGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRT 490
            + +RTT+VRKLLPESWGFLCPV TPDGEPCGL+NHMT+ C +         + +   M T
Sbjct: 363  SQMRTTTVRKLLPESWGFLCPVDTPDGEPCGLMNHMTAVCEI---------VTEMVPM-T 412

Query: 491  SILRVLIGVGMIPSLPKLVKSGPPA-VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAA 549
             I  +L  +G+ P    +  S P A    VLLDG VVG +      ++   LRR K++  
Sbjct: 413  DIPPLLCSLGVTPI--NVTPSKPYAECYRVLLDGSVVGWVEWDLAPEIAETLRRFKITQE 470

Query: 550  SVIPDDLEVGYVPLS-LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVF 608
               P   EV  +P++     YPGL++FT+P + VRPVRN+    +E      IG  EQV 
Sbjct: 471  KRFPARAEVVLIPMTGKPSLYPGLFIFTTPCRMVRPVRNLFYGRKE-----WIGTLEQVG 525

Query: 609  MEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYS-DHNQSPR---NMYQCQMAK 664
            + +         R+     +H  +             P   DH +  +       C   K
Sbjct: 526  INLV-----RLLRQVLCVLSHVPLSSPDCSWAAKKWIPRKLDHLEKFKWETGRRTCYCRK 580

Query: 665  QTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDM 724
            QTMGF V   K R+D KLYHL TPQ+P+VR + Y  YG+D YP GTN+IVAV++Y+GYDM
Sbjct: 581  QTMGFPVYNYKDRSDNKLYHLHTPQSPLVRPSMYDYYGMDSYPVGTNSIVAVISYSGYDM 640

Query: 725  EDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGL 784
            EDAMI+NKSS  RG  +G + + E+IDLS   ++         R  D  ++ + +D+DGL
Sbjct: 641  EDAMIVNKSSWQRGFAYGSVIKMESIDLSLKASRAGDNLVFGIRPGDL-NITAKLDADGL 699

Query: 785  PYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAV---DMKNSKNLPQKANIR 841
            P+VG M+ PG+P+ S  +  T    T      E   VD + +   D    K   +KA I 
Sbjct: 700  PFVGSMLQPGDPFYSFMNLNTGETFTVYYPNKEVGIVDNIRLCSNDRGTGKF--KKACIT 757

Query: 842  FRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAML 901
             R  RNP +GDKF+SRHGQKG+ SQLWP  DMPF+   GM PD++ NPH FPSRMTI ML
Sbjct: 758  VRVPRNPTVGDKFASRHGQKGILSQLWPVEDMPFTE-NGMVPDILFNPHGFPSRMTIGML 816

Query: 902  LESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEV 961
            +ES+A K  +LHG   DATPF  +           E  S +   GE L + G+N+ G E 
Sbjct: 817  IESMAGKSAALHGVSYDATPFTFT-----------EKNSALKYFGETLVSAGYNFFGTEK 865

Query: 962  LYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFG 1021
            +YSG+ G EL  EIF+G VYYQRLRHMVSDKFQVR+TG  D +T QP+KGR   GGIRFG
Sbjct: 866  MYSGISGLELEAEIFVGVVYYQRLRHMVSDKFQVRTTGPRDSVTNQPVKGRNVEGGIRFG 925

Query: 1022 EMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPA 1081
            EMERD+LLAHG ++LL DRL  CSD  +A VC  CGS+ +     P   +          
Sbjct: 926  EMERDALLAHGTSFLLQDRLFNCSDGSIAYVCMSCGSMTSPVLEKPLHSS--------AV 977

Query: 1082 RAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
             + ++ +C  C     +E V +P+VFRY  AELAAMNIK  L L
Sbjct: 978  ASNRRYSCSVCSEVDKIEVVPVPHVFRYFVAELAAMNIKTKLNL 1021


>gi|294876076|ref|XP_002767539.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative
            [Perkinsus marinus ATCC 50983]
 gi|239869199|gb|EER00257.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative
            [Perkinsus marinus ATCC 50983]
          Length = 1255

 Score =  767 bits (1980), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/1166 (38%), Positives = 648/1166 (55%), Gaps = 105/1166 (9%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
            HCRQA I+Y+G+L A V         PV   R   G  P+M+++  CHL G    K+V  
Sbjct: 118  HCRQAHITYSGELSATVNVSLGTGEPPVQMARVPLGLVPIMVRSEACHLHGMPPSKMVQC 177

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
             E+  E GGYFI+NG E+V R +I+PK N+P+++ R SF +R   Y+  AV +R +R D 
Sbjct: 178  GEDPDERGGYFIVNGNEKVIRLLIMPKSNFPVALYRPSFSNRGPLYSAYAVQMRSMRPDL 237

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALV--DTNDLEIFNHLTCCYDEKYK 214
            ++ T+ ++Y  +G+  + F     EYL+P+ ++LK L   + N       L C       
Sbjct: 238  TTQTVTMHYRKDGTCWVRFTYLKNEYLIPLMLLLKCLAPDELNSERSLFELLC------- 290

Query: 215  KEKGAVGSPLVSERVKIILAEVQD----LSLTTRLQCLQHIGEHFQPV----------ID 260
               G +    V+ERV  +L +++       + +R   L ++G  F+ V          +D
Sbjct: 291  --DGLMADTFVAERVTCMLEQMRTHPELKHVHSREDALYYLGSKFEVVFREKRGAGVSLD 348

Query: 261  GLQ----------SESYYAVAETVIRDYIFVHLNDNND----KFNLLIFMLQKLFSLVDH 306
            G+            E   +VA  ++   + VH     +    K + L+ + +KL +LV  
Sbjct: 349  GIALEVDDAAMSPVEKSVSVARRLLDSLMLVHCPKGAEGGKAKVDCLVLIFRKLMALVRG 408

Query: 307  TSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRK-----GKKLIQDEIENNGKKFDFF 361
                DN D++  QE+LLPG L    LKE L+  L +      KK  Q ++   G+     
Sbjct: 409  DIAPDNADAMDVQELLLPGQLFGALLKEVLQSSLLRLEGALAKKSRQAQV-GKGRAPTVL 467

Query: 362  NLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFF 421
            +   I+          +   +E+ L TG + +++GLDLQQ  G+TV A++LN  R++S F
Sbjct: 468  SAELIRNTFMG--VCDVTKRMESFLATGNITSRSGLDLQQTTGFTVVADKLNAYRYLSHF 525

Query: 422  RAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCR-VASYYDSRG 480
            RAVHRG+ F  ++TTSVRKLLPE+WGFLCPVHTPDG PCGLLNH+ + C+ V       G
Sbjct: 526  RAVHRGSFFQEMKTTSVRKLLPETWGFLCPVHTPDGTPCGLLNHLAAPCQPVVRIASPEG 585

Query: 481  NIRDFSKMRTSILRVLIGVGMI-PSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVA 539
             I    +   S+     GV ++  S       G      V LDGRV+G +  S +E V  
Sbjct: 586  VIPGLEEELASL-----GVQLVRSSKTSTANYGAGENAYVTLDGRVLGKVARSRLEAVAE 640

Query: 540  HLRRLKVSA-ASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNI 598
             LRRLK+      +P DLE+  V      ++ GL+LFT P + VRPVR+++     + N 
Sbjct: 641  ELRRLKIDKDCPGVPADLEI--VACQTPASFEGLWLFTGPCRMVRPVRDLA-----TGNE 693

Query: 599  ELIGPFEQVFMEIRC--PDGGDGGRRNAFPA------THEEIHPTGMLSVVANLTPYSDH 650
            EL+GP EQVF++I     D     + ++ P       TH E+ P  MLSV+A LTP+S+H
Sbjct: 694  ELVGPMEQVFLKIAATREDLEASTKTSSVPENIPMKYTHIELSPISMLSVIAGLTPFSNH 753

Query: 651  NQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGT 710
            NQSPRNMYQCQM KQTM        +R D K+Y +  PQ P+VRT   ++   D  P GT
Sbjct: 754  NQSPRNMYQCQMLKQTMAIPYLNHPYRTDNKVYKITYPQFPMVRTTVLSEANFDVKPAGT 813

Query: 711  NAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNK 770
            NAIVAV+A++G+DMEDA+I++K S DRG  HG +Y+T+ I+    G    R  +    N 
Sbjct: 814  NAIVAVIAHSGFDMEDALIISKGSYDRGFKHGSVYKTKVINCPPKGTVGSRLAQFRADNH 873

Query: 771  DAKSLHSV--IDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAV-- 826
              K    V  +D DG+PY+GQ +H G+P C + +K T   +    K  E  +V+ V +  
Sbjct: 874  SVKGEKVVKDLDYDGIPYIGQQVHEGDPICRVLNKGTGEAKLEKYKEGEVAWVEQVNMIG 933

Query: 827  ------------DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMP 874
                        +    K+  ++ +I+ R  RNP++GDKFSSRHGQKGV + LWP  DMP
Sbjct: 934  GGGWWGGGAGARNPGGIKDGSERMSIKLRLPRNPVVGDKFSSRHGQKGVMAILWPQADMP 993

Query: 875  FSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHG-KFMDATPFANSVKKTNGDT 933
            FS  +G+ PD++ NPH  PSRMTI ML+E +A K  +L G   ++A  F     K   DT
Sbjct: 994  FS-TSGISPDIMFNPHGMPSRMTIGMLIEFMAGKAAALTGMPVVNANSFRQYRGKGLLDT 1052

Query: 934  GTDESK--------SLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRL 985
              +  K        +  +  GE L+  G+ Y G E LYSG++G  L   I++G VYYQRL
Sbjct: 1053 EHNNEKDPYAPGDTTAHEYFGETLKKFGYEYLGAEELYSGMHGEPLKTHIYMGVVYYQRL 1112

Query: 986  RHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCS 1045
            RHMV DKFQVR+TG +D +TRQP+KGRK+ GG+RFGEMERDSL++HG + LL DRL  CS
Sbjct: 1113 RHMVLDKFQVRATGPIDPLTRQPVKGRKKHGGVRFGEMERDSLISHGTSALLADRLLKCS 1172

Query: 1046 DYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGME----TV 1101
            D     VC  CGS+L  ++ H  +   R  G    A+AP    C AC T +G+E     V
Sbjct: 1173 DACEDWVCPECGSIL--SYAHSPETVKRYSGREAAAQAP---ICRACSTERGIEVRCAAV 1227

Query: 1102 AMPYVFRYLAAELAAMNIKITLQLGD 1127
             +PYVFRY++AE A+MNI++ L++ +
Sbjct: 1228 TLPYVFRYMSAEFASMNIRLRLRVKE 1253


>gi|361125151|gb|EHK97205.1| putative DNA-directed RNA polymerase I subunit RPA2 [Glarea
            lozoyensis 74030]
          Length = 991

 Score =  765 bits (1976), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/1037 (42%), Positives = 611/1037 (58%), Gaps = 109/1037 (10%)

Query: 149  IRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
            +R VR D++S T  L+YL +G+V   F  +  EYL+PV +V+KALV+TND EIF+ +   
Sbjct: 1    MRSVRPDETSQTNVLHYLDDGNVIFRFSWKKAEYLVPVMMVMKALVETNDREIFDGIVG- 59

Query: 209  YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYY 268
                   + G        +R +++L   +   L T+ Q    +GE F+ V+    + S Y
Sbjct: 60   -----NNQSGESKKEFFFDRAELLLRTYKSYGLYTKSQTRAFLGEKFRVVLGVPATMSNY 114

Query: 269  AVAETVIRDYIFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEI 321
                  +R  + VHL + N       DKF +L+FM++KL++LV      DNPD++QNQEI
Sbjct: 115  DCGTEFLRKIVLVHLGNANVTETQDTDKFKMLLFMIRKLYALVSGECAVDNPDAVQNQEI 174

Query: 322  LLPGHLITIYLKEKLEDWLRKG-KKLIQDEIENNGKKFDFFNLANIKKV---MEKNPSKQ 377
            LL G L  + LKE LED++    + +++D I  + ++  F     +KK    +       
Sbjct: 175  LLGGFLYGMILKENLEDFVSSQIQAVLRDHIRKSPEE-TFSTPEFLKKFPVQILSRAGNN 233

Query: 378  IGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS 437
            IG  +E  + TG L + TGLDLQQ +G+TV AE++NFLRFIS FR VHRG+ FA L+TT+
Sbjct: 234  IGGKLEYFMSTGNLVSPTGLDLQQVSGFTVVAEKINFLRFISHFRMVHRGSFFAQLKTTT 293

Query: 438  VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLI 497
            VRKLLPESWGFLCPVHTPDG PCGLLNH+   C+          I+  S   +SI ++++
Sbjct: 294  VRKLLPESWGFLCPVHTPDGSPCGLLNHLAHKCK----------IQIQSIDVSSIPQLVV 343

Query: 498  GVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLE 557
             +G + S     K      + + LDGR++G     +   +   LR  KV     +P +LE
Sbjct: 344  DLGAVSSNSSSTKES----VVIQLDGRILGWCTPKQALLIGDTLRYWKVEGTHNVPKELE 399

Query: 558  VGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC--PD 615
            +GYVP S GGAYPG+Y+ + P +F+RPV+ + L  E+      +GP EQ FM I    P+
Sbjct: 400  IGYVPNSRGGAYPGIYMSSGPSRFIRPVKYLPLDKED-----FVGPQEQPFMSIAVTEPE 454

Query: 616  GGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALK 675
               G       +TH E  PT +LS++AN+TP+SDHNQSPRNMYQCQM KQ+MG    A++
Sbjct: 455  IISG------ESTHVEFDPTNILSILANMTPFSDHNQSPRNMYQCQMGKQSMGTPGTAIR 508

Query: 676  FRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSV 735
            +R D K Y LQT QTPIVR   + +YG D +P G NA+VAV++YTGYDM+DAMI+NKS+ 
Sbjct: 509  YRTDNKSYRLQTGQTPIVRAPLHNEYGFDNFPNGMNAVVAVISYTGYDMDDAMIINKSAH 568

Query: 736  DRGMCHGQIYQTETIDL--SDDGNKVDRGQKLFRRNKDAK---SLHSVIDSDGLPYVGQM 790
            +RG  HG IY+ + +DL   D      + +KLF     A+    + + +D DGLP++G++
Sbjct: 569  ERGFGHGTIYKVKKLDLEEGDKSRSSKKVKKLFGFAPGAEIKAEVKADLDDDGLPHIGRL 628

Query: 791  IHPGEPYCSIYDKTTNS----------WRTNSRKGSESVFVDYV-AVDMKNSKNLPQKAN 839
            ++      + +  T ++                K  E  F++ V  +  +N  +  +  +
Sbjct: 629  LNDNSIIAAWHTVTQDATGDFVNKDGITHYERYKEKELAFIEEVRLIGNENGTDPLRTMS 688

Query: 840  IRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIA 899
            I+ R  R+P++GDKFSSRHGQKGVCSQ WP  DMPF+  +GM+PD IINPHAFPSRMTI 
Sbjct: 689  IKLRVPRSPVVGDKFSSRHGQKGVCSQKWPTYDMPFT-ESGMQPDTIINPHAFPSRMTIG 747

Query: 900  MLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGV 959
            M +ES+A K G+LHG   D+TPF             DE  +  D  G  L   G+NYHG 
Sbjct: 748  MFVESLAGKAGALHGLAQDSTPFK-----------FDEEHTAGDYFGHQLMKAGYNYHGN 796

Query: 960  EVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIR 1019
            E +YSG+ G EL  +I+IG VYYQRLRHMV+DKFQVR+TG + Q+T QPIKGRK+GGGIR
Sbjct: 797  EPMYSGITGEELHADIYIGVVYYQRLRHMVNDKFQVRTTGPVTQLTGQPIKGRKKGGGIR 856

Query: 1020 FGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAI--REIG- 1076
             GEMERDSLLAHG A+LL DRL  CSD+  + +C  CG+ L+   + P   A+  R+ G 
Sbjct: 857  VGEMERDSLLAHGTAFLLQDRLLNCSDFQRSWICKACGTFLS---VQPTVSALSTRQSGT 913

Query: 1077 GLPPARAPKKVTCHAC-----QTSKGMET-----------------VAMPYVFRYLAAEL 1114
            G+        V C  C     + S+G E                  V +P V +YL  EL
Sbjct: 914  GI--------VRCRKCAHTVDEWSRGSEVWEDGSGQKYAGGDDTTIVTVPGVLKYLDVEL 965

Query: 1115 AAMNIKITLQLGDGATA 1131
            AAM IK+   +G  A A
Sbjct: 966  AAMGIKLKYNVGPIAGA 982


>gi|449515913|ref|XP_004164992.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like [Cucumis
            sativus]
          Length = 719

 Score =  760 bits (1963), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/443 (79%), Positives = 394/443 (88%), Gaps = 1/443 (0%)

Query: 687  TPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQ 746
            TPQTPIVRT+TYTKY IDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSV+RGM HGQIYQ
Sbjct: 277  TPQTPIVRTSTYTKYNIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQIYQ 336

Query: 747  TETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN 806
            TETIDLSD GN+  R QK+FRR+    S+ S+ID+DGLPYVGQMI P EPYCSIYD+   
Sbjct: 337  TETIDLSDQGNRSSRSQKMFRRSNIDTSVRSIIDADGLPYVGQMIQPDEPYCSIYDEVAG 396

Query: 807  SWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQ 866
            + RT   KGSE+V VDYV+VD+KN KN PQK NIRFR  RNP+IGDKFSSRHGQKGVCSQ
Sbjct: 397  TTRTMKLKGSEAVIVDYVSVDVKN-KNNPQKVNIRFRRPRNPMIGDKFSSRHGQKGVCSQ 455

Query: 867  LWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSV 926
            LWPD+DMPF G TGMRPDLIINPHAFPSRMTIAML+ESVAAKGG L+G+F++ATPF +SV
Sbjct: 456  LWPDVDMPFCGATGMRPDLIINPHAFPSRMTIAMLMESVAAKGGCLNGEFVNATPFRSSV 515

Query: 927  KKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLR 986
             KTN        ++LVDELG  L   GFNYHG+EVLYSGVYGTELTCEIFIGPVYYQRLR
Sbjct: 516  NKTNAGDEETNGETLVDELGSTLIKKGFNYHGLEVLYSGVYGTELTCEIFIGPVYYQRLR 575

Query: 987  HMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSD 1046
            HMVSDK+QVRSTGT+DQ+TRQPIKGRK+GGGIRFGEMERDS+LAHGA+YLLHDRLHTCSD
Sbjct: 576  HMVSDKYQVRSTGTVDQVTRQPIKGRKKGGGIRFGEMERDSMLAHGASYLLHDRLHTCSD 635

Query: 1047 YHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYV 1106
            +H+ADVCSLCGSVLT++F+ P KRA+REIGGLPP +APK+VTCHAC+TSKGMETVAMPYV
Sbjct: 636  HHIADVCSLCGSVLTSSFVQPPKRAVREIGGLPPGKAPKRVTCHACKTSKGMETVAMPYV 695

Query: 1107 FRYLAAELAAMNIKITLQLGDGA 1129
            F+YLAAELAAMNIK+TLQL  GA
Sbjct: 696  FKYLAAELAAMNIKMTLQLSSGA 718


>gi|158288277|ref|XP_310152.4| AGAP009539-PA [Anopheles gambiae str. PEST]
 gi|157019172|gb|EAA05843.4| AGAP009539-PA [Anopheles gambiae str. PEST]
          Length = 1152

 Score =  757 bits (1954), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/1194 (37%), Positives = 647/1194 (54%), Gaps = 154/1194 (12%)

Query: 10   EPLRELVRHHIESFDYMLDEGLSEMFD--------------------------------- 36
            E L  L R HI+SF+YMLDEG+ ++                                   
Sbjct: 30   EILANLGRPHIDSFNYMLDEGIEDVLSRLVPVCFEMANGSRIKLRITDISIAPPTVPMML 89

Query: 37   -----------HCRQAKISYTGKLMADVEFQYLDA--GSPVVRERFNFGQFPVMLKTRRC 83
                        CRQ   +Y G     + ++ LD    SP+ RE    G+ P+ML++  C
Sbjct: 90   VEVAEKRVFPSECRQKSDTYAGMCTITLNWE-LDGMPQSPLTRE---MGRIPIMLRSNAC 145

Query: 84   HLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYT 143
            +L  A  ++LV+  E   E GGYF++ G E++ R +I  ++NYP+++ R+++RDR + ++
Sbjct: 146  NLANATPEELVARGEHEDEWGGYFVVRGNEKLIRMLISTRRNYPIAVNRNTWRDRGKDFS 205

Query: 144  DKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFN 203
               V IRCVR+DQ S    L+YL NG+ +L   +      +PV ++LKAL D +D EI+ 
Sbjct: 206  ATGVFIRCVREDQYSTRNVLHYLTNGTAKLMISVSRALSFIPVMMILKALGDRSDNEIYK 265

Query: 204  HLTCC--YDEKYKKEKGAVGSPLVSERVKIILAEVQDL---SLTTRLQCLQHIGEHFQPV 258
             LT C   D+ YK+                I+A ++DL   +L +  +C  ++G   +  
Sbjct: 266  KLTACDESDQYYKR---------------CIMAMLRDLHAENLHSSQECRSYMGMLLRRR 310

Query: 259  IDGLQSESYYA---VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
            +  +   ++Y+       +++  + +HL+   DKFNLL+ M+ KL+++V      ++ D 
Sbjct: 311  LMDINLPAWYSDEQAGHFLLQHCVLIHLDSVEDKFNLLVHMVHKLYAVVQGRHAVESLDG 370

Query: 316  LQNQEILLPGHLITIYLKEKLEDWLRKGK----KLIQDEIENNGKKFDFFN-LANIKKVM 370
               QEILL GH+    L+E     ++  +    KL  D         +    L N+    
Sbjct: 371  TMMQEILLGGHIYQGLLREMCLSTMQYVRINLMKLCPDRTSPMVTTHELAQALKNVAGF- 429

Query: 371  EKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASF 430
             ++P           L TG LA  T + L Q  G  + AE +N +R++S FRAVHRG+ F
Sbjct: 430  -QHP-------FTMFLATGNLAKATEMGLMQSTGLVIIAENINRMRYMSHFRAVHRGSYF 481

Query: 431  AGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRT 490
              +RTT  R+LLP++WGF+CPVHTPDGEPCGLLNHMTS C V+   D         ++  
Sbjct: 482  LTMRTTEARQLLPDAWGFICPVHTPDGEPCGLLNHMTSDCTVSVTQDP--------ELVA 533

Query: 491  SILRVLIGVGMIPSLPKLVKSGPPAVLS------VLLDGRVVGVIPSSEIEKVVAHLRRL 544
            +I   L+ +GM P       +G    LS      V+L+G+++G++  +   +VV  LR L
Sbjct: 534  NIPATLVSLGMQPFGGD---AGSFGTLSHDDGYVVMLEGKMLGMLARATASQVVQKLRLL 590

Query: 545  KVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPF 604
            K+   + IP+  E+ +VP   GG YPGL+LF  P + +RPV+N+          ELIG F
Sbjct: 591  KIEGKT-IPNQTEIAFVPAREGGQYPGLFLFVGPARMMRPVKNLL-----CGKTELIGSF 644

Query: 605  EQVFMEIRCPDGGDGGRRNAFP--ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQM 662
            EQV+M+I            A+P   TH E+  T  +S +A L P  D NQSPRNMYQCQM
Sbjct: 645  EQVYMDICVTP------EEAYPQLTTHAELAKTSFMSNLAQLIPMPDCNQSPRNMYQCQM 698

Query: 663  AKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGY 722
             KQTMG        +   K+Y LQTP TP+ R   +    +D Y  GTNAIVAV++YTGY
Sbjct: 699  GKQTMGTPCHNWDKQCIAKMYRLQTPATPLFRPVHHDNIALDNYAMGTNAIVAVISYTGY 758

Query: 723  DMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSD 782
            DMEDAMI+NK++ +RG   G IY+ E ++L+        G   F RN    +L+  +D+D
Sbjct: 759  DMEDAMIINKAAFERGFAAGNIYKHEYVELT--------GDSFFARNPKDATLNPFLDND 810

Query: 783  GLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYV-----------AVDMKNS 831
            GLP+ G  +  G P    +D   +++   S +G E   VD V            +     
Sbjct: 811  GLPFKGAQLTKGTPLYCYFDVNDHTYHVVSYQGYEEAIVDNVKLGAPLQDAGRGIGRGGM 870

Query: 832  KNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHA 891
              + ++  + +R  RNP +GDKF+SR GQKG+CSQ WP ID+PF+  +GM PD+I NPH 
Sbjct: 871  AIVTKQLILTYRVPRNPSVGDKFASRAGQKGICSQHWPAIDLPFTE-SGMIPDIIFNPHG 929

Query: 892  FPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRT 951
            FPSRMTIAM++E++A K  +  G   DATPF             DES + +D  G +L  
Sbjct: 930  FPSRMTIAMMIETMAGKTAACQGLVHDATPFR-----------YDESNTAIDYFGRLLEQ 978

Query: 952  CGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKG 1011
             G++Y+G E +YSGV G E+  +IF G V+YQRLRHMVSDK+QVRSTG +DQ+T QP KG
Sbjct: 979  SGYDYYGTERMYSGVDGREMKVDIFFGVVHYQRLRHMVSDKWQVRSTGPIDQLTHQPNKG 1038

Query: 1012 RKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRA 1071
            R RGGG+RFGEMERD L++HGA++LL DRL   SD  VA VC  CG     T I P    
Sbjct: 1039 RSRGGGVRFGEMERDGLISHGASFLLQDRLVHGSDKVVALVCRRCG-----TLIGPIDSV 1093

Query: 1072 IREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
             + +            TC  C+  K +  V +PY+F++L ++L +MNI + LQL
Sbjct: 1094 TKRLADNSNQLQHVPATCRLCEDDKEIGHVEIPYIFKFLVSQLTSMNINVKLQL 1147


>gi|189240038|ref|XP_972683.2| PREDICTED: similar to RNA polymerase I 135kD subunit CG4033-PA
            [Tribolium castaneum]
          Length = 993

 Score =  756 bits (1953), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/1055 (39%), Positives = 612/1055 (58%), Gaps = 75/1055 (7%)

Query: 77   MLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFR 136
            M+K+ +CHL      +LV   E   E GGYF++ G ER+ R +++ ++NYP+++ RS ++
Sbjct: 1    MIKSNKCHLSAMSPAELVKHGEHEQEWGGYFVVKGHERLVRMLLMTRRNYPIAIKRSGWK 60

Query: 137  DRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDT 196
             R   ++D  + +RCVR+DQ++ T  L+++ +G+ +L F  +   Y  P+ ++LK L D 
Sbjct: 61   ARGSIFSDCGISMRCVREDQTATTNVLHFVTDGTAKLMFSYKKVLYYTPLVLILKCLCDY 120

Query: 197  NDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ 256
             D  I+  L           +G        + V+ +L  +   +L T   C  ++G+ F+
Sbjct: 121  CDQFIYQKLI----------QGYQHDSYYLDCVQNMLRNLHIENLHTHEDCKVYLGKMFR 170

Query: 257  ----PVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDN 312
                   D L       +A+ +++  I +HL+   DKFN+L+FM QKLF  V      + 
Sbjct: 171  VKFYECPDWLTDSE---IADFILKKCIMIHLDKPEDKFNMLVFMCQKLFVFVQDKCKPEG 227

Query: 313  PDSLQNQEILLPGHLITIYLKEKLEDWLRKGK-KLIQDEIENNGKKFDFFNLANIKKVME 371
             D++  QE+LL GHL    +KE+L+ WL   K  +++      G      +L+  + +  
Sbjct: 228  ADAVMMQELLLGGHLYLQLIKERLQGWLFGLKSNILKRSSTLTG------HLSQTEILQA 281

Query: 372  KNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFA 431
               S  +  + E  L TG + + +GL L Q  G T+ AE +N +R++S F+AVHRGA F 
Sbjct: 282  AKRSGGLENAFEMFLATGNITSSSGLGLMQDKGLTIVAENINRMRYMSHFKAVHRGAFFQ 341

Query: 432  GLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS 491
             +RTT VR+LLP++WGF+CPVHTPDG PCGLLNH+T+ C V    D+R           +
Sbjct: 342  EMRTTEVRQLLPDAWGFICPVHTPDGAPCGLLNHLTTNCSVTDVPDARK--------VEN 393

Query: 492  ILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV 551
            I  +L  +GM+ +L  +   G      V+LDGRV+G +      K+V  LR  K+    V
Sbjct: 394  IPIILTRLGMV-ALKYVASVGFDQNYVVVLDGRVLGYVRRDLAPKLVEQLRLCKIKGEEV 452

Query: 552  IPDDLEVGYVPL-SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFME 610
             P+ LE+  VPL  +   +PGLYLFT P + +RP+ N+     +++ +E +G FEQV+M+
Sbjct: 453  -PNTLEIVLVPLMKVTAQFPGLYLFTGPARMMRPLLNL-----KTKEVEFVGTFEQVYMD 506

Query: 611  IRC--PDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMG 668
            I C  PD    G       TH E+     LS +A L P  D NQSPRNMYQCQM KQTMG
Sbjct: 507  I-CVSPDEYYKG-----VTTHMELSKLAFLSNLAQLIPMPDCNQSPRNMYQCQMGKQTMG 560

Query: 669  FSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAM 728
                  + +++ KLY LQTP TP+ R   Y    +D++  GTNAIVAV++YTGYDMEDAM
Sbjct: 561  TPCHNWRSQSETKLYRLQTPATPLFRPVHYDNINLDDFAMGTNAIVAVISYTGYDMEDAM 620

Query: 729  ILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVG 788
            I+NK++ +RG  HG IY+TE + L  + +        F RN +   L   +D+DGLP +G
Sbjct: 621  IINKAADERGFAHGSIYKTEFVTLEHESS-------YFCRNPEKPELAEFLDTDGLPIIG 673

Query: 789  QMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNP 848
            + +  G+P    Y    + ++     G E  FVD V +   + +   + A   FR  RNP
Sbjct: 674  RRMKDGDPLYCYYSVDESVYKVTKFSGKEECFVDMVKL-CASFETTNRTACFTFRVPRNP 732

Query: 849  IIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
             +GDKF+SR GQKG+CSQ WP  D+PF+  TG+ PD++ NPH FPSRMTIAM++E +A K
Sbjct: 733  NVGDKFASRAGQKGICSQKWPMEDLPFTE-TGLVPDIVFNPHGFPSRMTIAMMIEVMAGK 791

Query: 909  GGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYG 968
              +LHG   DATPF    K T  DT        +D  G +L   G+NY+G E +YSG+ G
Sbjct: 792  SAALHGLVHDATPF----KFTEEDTA-------IDYFGRLLEAGGYNYYGTETMYSGIDG 840

Query: 969  TELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSL 1028
             E+T +IF G V+YQRLRHMVSDK+QVRSTG  D +TRQP+KGRKRGGG+RFGEMERDSL
Sbjct: 841  REMTAQIFFGIVHYQRLRHMVSDKWQVRSTGPTDILTRQPLKGRKRGGGVRFGEMERDSL 900

Query: 1029 LAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVT 1088
            ++HGA++LL DRL  CSD   A +C+ CG++L    +      I  +      ++  K T
Sbjct: 901  ISHGASFLLQDRLFHCSDKTTAFICTSCGTLLGPVTV------ITRVAE-KANQSTCKET 953

Query: 1089 CHACQTSKGMETVAMPYVFRYLAAELAAMNIKITL 1123
            C  C   + +  + +PY+F++   ++A+ NI + +
Sbjct: 954  CRLCGHGRDISEIQIPYIFKFFVTQMASCNINVKM 988


>gi|452825715|gb|EME32710.1| DNA-directed RNA polymerase subunit isoform 1 [Galdieria sulphuraria]
          Length = 1206

 Score =  754 bits (1948), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/1068 (41%), Positives = 613/1068 (57%), Gaps = 77/1068 (7%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
            HCR+ + SY   L   +  + +D        R   G+ PVM+++  CHL   DS +L  L
Sbjct: 162  HCRENQTSYKAPLFLTLRCK-IDGKVCHQLVRL-VGEIPVMVRSAVCHLSKMDSGELRKL 219

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
             EE  E GGYFI NG+E+V R +I+ ++N+ M++ R S  +R   ++  +  IRCVR DQ
Sbjct: 220  GEEEFETGGYFICNGVEKVLRMIIVSRRNHIMAIKRDSNSNRGPLFSSFSCYIRCVRPDQ 279

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALV-DTNDLEIFNHLTCCYDEKYKK 215
            +S T  L+YL +G+++    +  +EY++PV ++ KAL+ +  D  I+  +          
Sbjct: 280  TSKTFHLHYLTSGAIQARISISKQEYMIPVLLIFKALIPEITDRTIYEVIM--------- 330

Query: 216  EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSE-SYYAVAETV 274
             +G      + +RV  +L +       T    L ++G  F+  +     + +   V    
Sbjct: 331  -QGNENDIYLRDRVIAMLMDGLSKYEGTAGSELAYLGRTFRIALSIFDDQVTDEQVGRQF 389

Query: 275  IRDYIFVHL-------NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
            ++ ++ +HL       +DN  K  +L  M++KL ++   +   D+PDSL +QE+LLPGHL
Sbjct: 390  LKHFVLIHLSGDKYTDDDNVAKLEMLALMIRKLIAVARGSICPDSPDSLAHQEVLLPGHL 449

Query: 328  ITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLK 387
              +YLKEK+ED+L   + +I  +  N  K             +++ P   IG  +E  + 
Sbjct: 450  YMMYLKEKIEDYLLGIRSVILKDF-NMKKAIHLEEGPYFATCLQRCPI-DIGKRMEHFIA 507

Query: 388  TGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWG 447
            TG+L T+TGLDL Q AGY+V AER+++ R+IS FR VHRG  F+ L+TTSVRKLLPE+WG
Sbjct: 508  TGQLQTRTGLDLMQTAGYSVVAERISYYRYISHFRCVHRGQFFSELKTTSVRKLLPEAWG 567

Query: 448  FLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS-ILRVLIGVGMIPSLP 506
            FLCPVHTPDG PCGLLNH+     V+             +M T  +L  L+  GM  S  
Sbjct: 568  FLCPVHTPDGAPCGLLNHLAHPVIVSQS----------EEMATEPLLSWLVEHGMTLSNK 617

Query: 507  KLVKSGPPAV-LSVLLDGRVVGVIPSSEIEKVVAHLRRLKVS-AASVIPDDLEVGYVPLS 564
                  P A    V+LDG+++G +    +  +   +R LKV+   +++P   E+  V   
Sbjct: 618  YSSLEMPNAWEYPVVLDGKILGYLSVDIMMNISQQMRILKVNNEMNILPKTAEIVTVVRQ 677

Query: 565  LGG--AYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRR 622
                  +PGL++FT P + +RPV    L   +S   E IGP EQ F+ I  P       +
Sbjct: 678  TWNDRNFPGLFIFTGPARLLRPVW---LLLSKSPKQEYIGPLEQAFLRIANPKVVSLDWK 734

Query: 623  NA-------FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALK 675
            N         PATHEEI     LS+VA+LTP+SD NQSPRNMYQCQM+KQ++G      +
Sbjct: 735  NMKKDESVFVPATHEEIDCLSFLSLVASLTPFSDMNQSPRNMYQCQMSKQSLGTPYHLFE 794

Query: 676  FRADQKLYHLQTPQTPIVRT-NTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSS 734
             R+D K+Y L TPQ PIVR   T   + +D +P G NA+VAVL+YTGYDMEDAM++NK+S
Sbjct: 795  RRSDSKMYRLVTPQIPIVRNFPTQDSFEMDHFPNGFNAVVAVLSYTGYDMEDAMVINKAS 854

Query: 735  VDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPG 794
            +DRG+ HG +Y T+ IDL        RG K   +     S H  I  DGLP VG  +  G
Sbjct: 855  LDRGLAHGTMYSTQLIDLDQM-----RGTK--SKYIGGGSQHETIGEDGLPEVGVRVFKG 907

Query: 795  EPYCSIYDKTTNSWRTNS------RKGSESVFVDYV---AVDMKNSKNLPQKANIRFRHT 845
            +P   I D+T  S  + +       K ++   VD V    V  + S    ++A+I+ R+ 
Sbjct: 908  DPLYCIADETVYSLASGTSEKVYFHKQADPAIVDQVRLIPVTSRASAEGIRRASIKLRYP 967

Query: 846  RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
            R P+IGDKF+SRHGQKGV S LWP  DMPF+   G+ PD+I NP+ FPSRMTI M++ES+
Sbjct: 968  RIPVIGDKFASRHGQKGVLSALWPSEDMPFTE-NGIVPDIIFNPNGFPSRMTIGMMMESI 1026

Query: 906  AAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSG 965
              K G+LHG F D+TPF             DE  + VD  GE LR  GFN++G EV+YSG
Sbjct: 1027 CGKAGALHGMFQDSTPFR-----------FDEDNTAVDYFGEQLRKAGFNFYGNEVMYSG 1075

Query: 966  VYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMER 1025
              G     +IFIG ++YQRLRHMVSDKFQVRSTG ++ +TRQP+KGRK GG IRFGEMER
Sbjct: 1076 YTGEPFQVDIFIGVIHYQRLRHMVSDKFQVRSTGPINPLTRQPVKGRKVGGAIRFGEMER 1135

Query: 1026 DSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIR 1073
            D+LLAHGAAYLLHDRL  CSD H    C +C        +  +K A R
Sbjct: 1136 DALLAHGAAYLLHDRLQLCSDLHTVYACEVCTIASFVDIVAKRKDAQR 1183


>gi|440296696|gb|ELP89482.1| DNA-directed RNA polymerase I subunit RPA2, putative [Entamoeba
            invadens IP1]
          Length = 1100

 Score =  745 bits (1923), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/1159 (37%), Positives = 638/1159 (55%), Gaps = 111/1159 (9%)

Query: 12   LRELVRHHIESFDYMLDEGLSE-------------------------------MFD---- 36
            L EL R H+ESFDY LDEG +                                MF+    
Sbjct: 10   LLELTRAHVESFDYFLDEGKNAILKTIPPMHIIDPEKNEIMTVSIKTITIDKPMFNGKPL 69

Query: 37   ---HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD---S 90
                CR A +SY G L   + F  +  G   V    N G+ P+ML +  C L G D    
Sbjct: 70   YPFMCRTAGLSYLGAL--HIVFSVIQNGIENVFN-VNAGEIPMMLCSDNCWL-GTDFRTP 125

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            Q  + ++E+  E+GGYFI++G+E+  R ++  K N+P+++ R S+  +   +T   V+IR
Sbjct: 126  QDRIDIREDPHEIGGYFIIHGVEKYLRMILYAKPNHPIAVARPSWEGKGAHFTKYGVMIR 185

Query: 151  CVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYD 210
            C+R D +++T  ++YL NG V + F  + +E+ +P+ ++L+     +D EIF  +T    
Sbjct: 186  CMRNDITTLTNTMHYLDNGKVCVRFIYRKQEFFIPIILLLRVYTGMSDREIFELVTMGNK 245

Query: 211  EKYKKEKGAVGSPLVSERVKIILAEVQDL--SLTTRLQCLQHIGEHFQPVIDGLQSESYY 268
            E          S LV+    ++  E   +  +L T  Q L  IG+ F+ V+      +  
Sbjct: 246  EN---------SNLVNAAELLVRRESGSILNTLNTTEQILAFIGQKFRVVMVTGAELTDA 296

Query: 269  AVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
               + ++ +++FVHL+    K +L IFMLQKLF+ V+     ++ D+   Q ILL GHL 
Sbjct: 297  QAGKYILDEFVFVHLDSYAQKADLSIFMLQKLFAFVNGEIDEESVDTPMTQSILLAGHLY 356

Query: 329  TIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKT 388
                K++L   L + + ++  +  N  K+          +++E   +  +   ++T + T
Sbjct: 357  QTVFKDELNSCLMRIRMMVLKDWHNERKRSKLTEKGVQSRIIESG-ANGLSKRMQTFIAT 415

Query: 389  GRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGF 448
            G  A     DLQQ  G+++ AERLN  RF S F +VHRGA +  ++TT++RKL+PESWGF
Sbjct: 416  GNFAPTGTNDLQQENGFSITAERLNHSRFSSHFVSVHRGAFYTTMKTTAIRKLVPESWGF 475

Query: 449  LCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKL 508
            +CPVHTPDG PCGLLNH+  +CR+        N R       + +R+   +GMI S    
Sbjct: 476  MCPVHTPDGAPCGLLNHLACSCRI--------NARFHPLPDETTIRLCTQLGMISSQ--- 524

Query: 509  VKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGA 568
              + P   + VL++G+V+G +   +I   V  LR  +  +  ++P+ LE+GY    L   
Sbjct: 525  FMTLPSIYIPVLMNGKVIGKVAPHDINAFVQKLRYERAMSNPMLPNTLEIGYCDGYLHDG 584

Query: 569  YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPAT 628
            Y  LYL   P + VRP+R+       +     IGP+EQVF++I+C +  +G  ++ +   
Sbjct: 585  YHALYLNDMPGQMVRPIRH-----RLTGKTVYIGPYEQVFLDIKCGNAIEGMDKSEY--- 636

Query: 629  HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTP 688
             EEI     LS++A   P+   NQSPRNMYQCQMAKQTMGF + A K+R+D KL  L  P
Sbjct: 637  -EEISEMNSLSLLATTIPFCHMNQSPRNMYQCQMAKQTMGFPMMAYKYRSDSKLLLLHYP 695

Query: 689  QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
            Q  + +      +G +E PTGTNA+VAV++YTGYDMEDA+I+ K+S++RG  HG  Y+  
Sbjct: 696  QRSLCQCTLMEPFGFNELPTGTNAVVAVISYTGYDMEDALIIKKTSIERGFGHGSQYKAY 755

Query: 749  TIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSW 808
             IDL+ +  ++  G      N   +     +D DGLP  G++      Y  I DK T   
Sbjct: 756  KIDLTKEQTQMISG-----LNPKGELYDEHLDFDGLPRPGEIFENSPIYSEI-DKITGVV 809

Query: 809  RTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLW 868
            +T    G +        V     +   Q+A +R R+ R P+IGDKFSSRHGQKG  S  +
Sbjct: 810  KTKKLMGEKGYIESVTIVGNDKKEAGQQQAVVRVRYNRTPVIGDKFSSRHGQKGTLSVHY 869

Query: 869  PDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKK 928
             + DMPF+  +GM PD++INPHAFPSRMTI ML+ES+A+K G+L G++ D TPF      
Sbjct: 870  AEKDMPFTE-SGMTPDILINPHAFPSRMTIGMLIESMASKVGALKGEYQDGTPFK----- 923

Query: 929  TNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHM 988
                   DE    V+  G+ L   G+NY+G E +YSG+ GTE+  +I+IG VYYQRL H 
Sbjct: 924  ------FDEQNRAVEYFGKQLLKYGYNYYGSEPMYSGITGTEMQTDIYIGVVYYQRLVHQ 977

Query: 989  VSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYH 1048
            V DK+QVRSTG ++ +T+QP+KGRKRGGGIR GEMERDSLL HG A L+ DR   CSD  
Sbjct: 978  VKDKYQVRSTGPVNPLTQQPVKGRKRGGGIRLGEMERDSLLGHGTAALVEDRFLQCSDKS 1037

Query: 1049 VADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFR 1108
               VC  CGS+++   I+      R             + C +C  +  ++ + +PYV R
Sbjct: 1038 YHYVCKKCGSMVS---IYKNTELDR-------------MVCASCGQNSAIKKIQVPYVLR 1081

Query: 1109 YLAAELAAMNIKITLQLGD 1127
            YLA+EL AMN+++ L+  +
Sbjct: 1082 YLASELGAMNVRLRLKTAN 1100


>gi|328704219|ref|XP_001948731.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like
            [Acyrthosiphon pisum]
          Length = 1121

 Score =  744 bits (1920), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/1165 (37%), Positives = 659/1165 (56%), Gaps = 121/1165 (10%)

Query: 12   LRELVRHHIESFDYMLDEGLSEM--------FD--------------------------- 36
            L+EL   HI+SF+YM++EGL+          FD                           
Sbjct: 25   LQELGTPHIDSFNYMIEEGLNLAISDLLPVEFDTKGKYRVKLTLLEATIHQPRVPTGSLG 84

Query: 37   ---------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQG 87
                      CRQ   +Y+G+L   + ++  D    ++    + GQ P+MLK++ CHL+ 
Sbjct: 85   VKSHSIYPLECRQRHGTYSGRLEIKLSWRINDVEQMIIDR--DIGQVPIMLKSKLCHLEK 142

Query: 88   ADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAV 147
               ++LV L E   E GGYFI+ G ER+ R ++  ++N+P ++ R++++++ + ++D  +
Sbjct: 143  MSPKQLVKLGEHQDEWGGYFIVKGKERLVRLLLGTRRNFPTAVQRNTWKNKDQFFSDIGI 202

Query: 148  VIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTC 207
            +IRCV+ D ++VT  L+YL NG+ +L   ++ + +  P+ ++++ L +++D  IF H+  
Sbjct: 203  LIRCVKDDLTTVTNNLHYLTNGTAKLMIPIKKRVFYAPIFLIMRCLTNSSDEFIFRHII- 261

Query: 208  CYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGL-QSES 266
                     KG          V  ++  + + ++  +    ++IG  F+P    L + ++
Sbjct: 262  ---------KGHEDDLYFIRSVMEMMRSLHESNIHCQEDAKEYIGILFRPRFYELPEWKT 312

Query: 267  YYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGH 326
               V + ++R Y+ +HLN + DK  LL+FMLQKLFS+  +  + +  D +  QE++L GH
Sbjct: 313  NKEVCDHMLRSYVLIHLNTDFDKLKLLVFMLQKLFSVAQNKCLIEGADGIMMQELMLGGH 372

Query: 327  LITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEK-NPSKQIGTSIETM 385
            L    LKEKL+ WL        + ++ N  K D     +I  +M        I  ++   
Sbjct: 373  LYLKILKEKLQTWL--------NLVKINLLKVDQGGQPSIGDMMTALRRCDLIEHAMTNF 424

Query: 386  LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
              TG L +Q+GL +QQ  G T+  E ++ +R+++ FRAVHRGA F  +RTT  R+LLP++
Sbjct: 425  FATGNLNSQSGLGMQQDKGLTILVENISRMRYMAHFRAVHRGAIFESMRTTEPRRLLPDA 484

Query: 446  WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
            WGF+CPVHTPDG PCGLLNH+T +C V     SR  +RD  K       VL+ +GM  + 
Sbjct: 485  WGFICPVHTPDGTPCGLLNHLTKSCIVTKSI-SRKVLRDIPK-------VLVSLGMCEAS 536

Query: 506  PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL-- 563
             K        V +V+LDGR++G +P +     +  LR LKV     IP+  E+ ++    
Sbjct: 537  YKPQDINIGFVYNVILDGRIIGYVPETLTALFIRKLRTLKVKGKQ-IPETTEIVWLQKKE 595

Query: 564  -SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRR 622
             ++ G +PGL+LFT   + +RPV N+ L     + IELIG FEQV+++I   +  D  R 
Sbjct: 596  ENILGQFPGLFLFTGNARMMRPVFNLDL-----EQIELIGTFEQVYLDISISE--DEIRP 648

Query: 623  NAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKL 682
            N    ++ E+  T  LS +A L P  D+NQSPRNMYQCQM KQTMG +      +++ KL
Sbjct: 649  NI--TSYREVTKTDFLSHLACLIPLPDYNQSPRNMYQCQMGKQTMGTACHNWHLQSETKL 706

Query: 683  YHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG 742
            Y +Q+P +P+ R   Y    +D++P GTNA++AV++YTGYDMEDAMI+NK ++DRG  HG
Sbjct: 707  YRIQSPASPLFRPVHYDALSMDDFPMGTNAVIAVISYTGYDMEDAMIINKMALDRGFAHG 766

Query: 743  QIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYD 802
             I++TE I+         +    F R+   + L + +  DGLP++G  +  G PY S +D
Sbjct: 767  SIFKTELIE--------TKPHTYFMRDPFKEDLPNFLGVDGLPHIGLKLSKGTPYYSYFD 818

Query: 803  KTTNSWRTNSRKGSESVFVDYV--AVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQ 860
            +    +       +E V VD V    D    + +P KA I  R  RNP +GDKF+SR GQ
Sbjct: 819  EQIQGFIIAKYLSNEEVIVDSVRQCGDFTTGRKIPNKATITVRVQRNPTVGDKFASRAGQ 878

Query: 861  KGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDAT 920
            KG+ S+ WP  D+PF+  +GM PD++ NPH FPSRMTIAM++E +A K  ++HG   DAT
Sbjct: 879  KGIFSKGWPAEDLPFTE-SGMVPDIVFNPHGFPSRMTIAMMIECMAGKSAAVHGVVHDAT 937

Query: 921  PFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPV 980
            PF  S           E  + +D  G++L   G+NY G E +YSGV G  +   IF G V
Sbjct: 938  PFKYS-----------EEDTAIDFFGKLLEAGGYNYFGTEQMYSGVDGRAMKASIFFGVV 986

Query: 981  YYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDR 1040
            +YQRLRHMVSDK+QVRSTG +D +T+QP+KGRKRGGG R GEMERD+L++HG  +L+ DR
Sbjct: 987  HYQRLRHMVSDKWQVRSTGPVDAVTKQPVKGRKRGGGGRVGEMERDALISHGTPFLMQDR 1046

Query: 1041 LHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMET 1100
               CSD   A +C  C ++LT+     +            + + K   C  C +++  E 
Sbjct: 1047 FMDCSDKSTALLCLKCHTILTSLIQFKED-----------SYSSKIAKCRTCDSTQVQE- 1094

Query: 1101 VAMPYVFRYLAAELAAMNIKITLQL 1125
            + +P VFRYL +ELAA+NIK+ L +
Sbjct: 1095 IGIPNVFRYLCSELAAINIKLQLNI 1119


>gi|452825716|gb|EME32711.1| DNA-directed RNA polymerase subunit isoform 2 [Galdieria sulphuraria]
          Length = 1221

 Score =  744 bits (1920), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/1083 (40%), Positives = 613/1083 (56%), Gaps = 92/1083 (8%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
            HCR+ + SY   L   +  + +D        R   G+ PVM+++  CHL   DS +L  L
Sbjct: 162  HCRENQTSYKAPLFLTLRCK-IDGKVCHQLVRL-VGEIPVMVRSAVCHLSKMDSGELRKL 219

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
             EE  E GGYFI NG+E+V R +I+ ++N+ M++ R S  +R   ++  +  IRCVR DQ
Sbjct: 220  GEEEFETGGYFICNGVEKVLRMIIVSRRNHIMAIKRDSNSNRGPLFSSFSCYIRCVRPDQ 279

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALV-DTNDLEIFNHLTCCYDEKYKK 215
            +S T  L+YL +G+++    +  +EY++PV ++ KAL+ +  D  I+  +          
Sbjct: 280  TSKTFHLHYLTSGAIQARISISKQEYMIPVLLIFKALIPEITDRTIYEVIM--------- 330

Query: 216  EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSE-SYYAVAETV 274
             +G      + +RV  +L +       T    L ++G  F+  +     + +   V    
Sbjct: 331  -QGNENDIYLRDRVIAMLMDGLSKYEGTAGSELAYLGRTFRIALSIFDDQVTDEQVGRQF 389

Query: 275  IRDYIFVHL-------NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
            ++ ++ +HL       +DN  K  +L  M++KL ++   +   D+PDSL +QE+LLPGHL
Sbjct: 390  LKHFVLIHLSGDKYTDDDNVAKLEMLALMIRKLIAVARGSICPDSPDSLAHQEVLLPGHL 449

Query: 328  ITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLK 387
              +YLKEK+ED+L   + +I  +  N  K             +++ P   IG  +E  + 
Sbjct: 450  YMMYLKEKIEDYLLGIRSVILKDF-NMKKAIHLEEGPYFATCLQRCPI-DIGKRMEHFIA 507

Query: 388  TGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWG 447
            TG+L T+TGLDL Q AGY+V AER+++ R+IS FR VHRG  F+ L+TTSVRKLLPE+WG
Sbjct: 508  TGQLQTRTGLDLMQTAGYSVVAERISYYRYISHFRCVHRGQFFSELKTTSVRKLLPEAWG 567

Query: 448  FLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS-ILRVLIGVGMIPSLP 506
            FLCPVHTPDG PCGLLNH+     V+             +M T  +L  L+  GM  S  
Sbjct: 568  FLCPVHTPDGAPCGLLNHLAHPVIVSQS----------EEMATEPLLSWLVEHGMTLSNK 617

Query: 507  KLVKSGPPAV-LSVLLDGRVVGVIPSSEIEKVVAHLRRLKVS-AASVIPDDLEVGYVPLS 564
                  P A    V+LDG+++G +    +  +   +R LKV+   +++P   E+  V   
Sbjct: 618  YSSLEMPNAWEYPVVLDGKILGYLSVDIMMNISQQMRILKVNNEMNILPKTAEIVTVVRQ 677

Query: 565  LGG--AYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRR 622
                  +PGL++FT P + +RPV    L   +S   E IGP EQ F+ I  P       +
Sbjct: 678  TWNDRNFPGLFIFTGPARLLRPVW---LLLSKSPKQEYIGPLEQAFLRIANPKVVSLDWK 734

Query: 623  NA-------FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALK 675
            N         PATHEEI     LS+VA+LTP+SD NQSPRNMYQCQM+KQ++G      +
Sbjct: 735  NMKKDESVFVPATHEEIDCLSFLSLVASLTPFSDMNQSPRNMYQCQMSKQSLGTPYHLFE 794

Query: 676  FRADQKLYHLQTPQT---------------PIVRT-NTYTKYGIDEYPTGTNAIVAVLAY 719
             R+D K+Y L TPQ                PIVR   T   + +D +P G NA+VAVL+Y
Sbjct: 795  RRSDSKMYRLVTPQVSFSFHVWTSFDIFQIPIVRNFPTQDSFEMDHFPNGFNAVVAVLSY 854

Query: 720  TGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVI 779
            TGYDMEDAM++NK+S+DRG+ HG +Y T+ IDL        RG K   +     S H  I
Sbjct: 855  TGYDMEDAMVINKASLDRGLAHGTMYSTQLIDLDQM-----RGTK--SKYIGGGSQHETI 907

Query: 780  DSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNS------RKGSESVFVDYV---AVDMKN 830
              DGLP VG  +  G+P   I D+T  S  + +       K ++   VD V    V  + 
Sbjct: 908  GEDGLPEVGVRVFKGDPLYCIADETVYSLASGTSEKVYFHKQADPAIVDQVRLIPVTSRA 967

Query: 831  SKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPH 890
            S    ++A+I+ R+ R P+IGDKF+SRHGQKGV S LWP  DMPF+   G+ PD+I NP+
Sbjct: 968  SAEGIRRASIKLRYPRIPVIGDKFASRHGQKGVLSALWPSEDMPFTE-NGIVPDIIFNPN 1026

Query: 891  AFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLR 950
             FPSRMTI M++ES+  K G+LHG F D+TPF             DE  + VD  GE LR
Sbjct: 1027 GFPSRMTIGMMMESICGKAGALHGMFQDSTPFR-----------FDEDNTAVDYFGEQLR 1075

Query: 951  TCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIK 1010
              GFN++G EV+YSG  G     +IFIG ++YQRLRHMVSDKFQVRSTG ++ +TRQP+K
Sbjct: 1076 KAGFNFYGNEVMYSGYTGEPFQVDIFIGVIHYQRLRHMVSDKFQVRSTGPINPLTRQPVK 1135

Query: 1011 GRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKR 1070
            GRK GG IRFGEMERD+LLAHGAAYLLHDRL  CSD H    C +C        +  +K 
Sbjct: 1136 GRKVGGAIRFGEMERDALLAHGAAYLLHDRLQLCSDLHTVYACEVCTIASFVDIVAKRKD 1195

Query: 1071 AIR 1073
            A R
Sbjct: 1196 AQR 1198


>gi|149234772|ref|XP_001523265.1| DNA-directed RNA polymerase I 135 kDa polypeptide [Lodderomyces
            elongisporus NRRL YB-4239]
 gi|146453054|gb|EDK47310.1| DNA-directed RNA polymerase I 135 kDa polypeptide [Lodderomyces
            elongisporus NRRL YB-4239]
          Length = 817

 Score =  732 bits (1889), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/860 (45%), Positives = 534/860 (62%), Gaps = 80/860 (9%)

Query: 292  LLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEI 351
            +L+FM++KL+SLV      DNPD+ Q+QE+LL G L  + +KEK++++L+  K  +Q ++
Sbjct: 1    MLLFMIRKLYSLVARDCAPDNPDATQHQEVLLGGFLYGMIIKEKIDEYLQNFKLQVQSDL 60

Query: 352  ENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAER 411
             N G   +F N   + +V  +  ++ IG  ++  L TG L +Q+GLDLQQ +GYTV AE+
Sbjct: 61   -NRGVGVNFENQKYMTRVFSR-INENIGQKLQYFLSTGNLVSQSGLDLQQVSGYTVVAEK 118

Query: 412  LNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCR 471
            +NF RFIS FR VHRGA FA L+TT+VRKLLPESWGFLCPVHTPDG PCGLLNH++  C 
Sbjct: 119  INFHRFISHFRMVHRGAFFAELKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLSHKCV 178

Query: 472  VASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPS 531
            +A+         D S++  ++ +  +GV     LP    +  P +  V LDG++VG    
Sbjct: 179  IAT------TASDVSQVPKALTQ--LGV-----LPANAYAAGPDLCVVQLDGKIVGWTTH 225

Query: 532  SEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLP 591
             + + +   LR  KV  +  +P DLE+GYVP S+ G YPGLY+F    + +RPV+ + L 
Sbjct: 226  EQGKIIADTLRFWKVEGSHGLPLDLEIGYVPPSVNGQYPGLYIFGGHSRMMRPVKYLPLG 285

Query: 592  SEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDH 650
             E+     ++GPFEQV+M +   P+  +         +H E  PT +LS++ANLTP+SD 
Sbjct: 286  KED-----IVGPFEQVYMNVAVTPEEIENNVH-----SHVEFSPTNILSILANLTPFSDF 335

Query: 651  NQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGT 710
            NQSPRNMYQCQM KQTMG    AL  R+D KLY LQT QTPIV+ N Y +YG+D +P G 
Sbjct: 336  NQSPRNMYQCQMGKQTMGTPGTALVHRSDNKLYRLQTGQTPIVKANLYDEYGMDNFPNGM 395

Query: 711  NAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNK 770
            NAIVAV++YTGYDM+DAMI+NKSS +RG  +G +Y+ E +DL     K D   + F    
Sbjct: 396  NAIVAVISYTGYDMDDAMIINKSSDERGFGYGTVYKVEKVDLGQSRRKGDPISQHFGFGD 455

Query: 771  DA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAV-- 826
            D   ++    +D DGLP +G  +  G+P  + +D T    +  +   SE  +++ V +  
Sbjct: 456  DEWPETWKEKLDDDGLPLIGVKVEEGDPIVAYFDDTLGKTKVKTYHSSEPAYIEEVKLLG 515

Query: 827  DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLI 886
            D    K   Q+  I++R TR P IGDKFSSRHGQKGV S+ WP IDMPF+  +GM+PD+I
Sbjct: 516  DDAGDKE-AQQITIKYRITRQPQIGDKFSSRHGQKGVLSRKWPQIDMPFT-ESGMQPDVI 573

Query: 887  INPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELG 946
            INPHAFPSRMTI M +ES+A K G+LHG   D+TP+  S           ES +  D  G
Sbjct: 574  INPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPWKFS-----------ESDTPADYFG 622

Query: 947  EMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITR 1006
            + L   G+N+HG E +YSG  G EL C+I+IG VYYQRLRHMV+DKFQVRSTG ++ +T 
Sbjct: 623  DQLLKAGYNFHGNEPMYSGATGEELRCDIYIGCVYYQRLRHMVNDKFQVRSTGPVNSLTM 682

Query: 1007 QPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIH 1066
            QP+KGRKR GGIR GEMERD+L+ HG A+LL DRL  CSDY    VC  CGS+LT     
Sbjct: 683  QPVKGRKRSGGIRVGEMERDALIGHGTAFLLQDRLLNCSDYAQTSVCRTCGSILTT---- 738

Query: 1067 PQKRAIREIGGLPPARAPKKVTCHACQTS----KGME---------------------TV 1101
              + ++  IG +   R      C  C       KG                       TV
Sbjct: 739  --QTSVPRIGAMASIR------CRRCSVRLDKYKGFAKDSEIWEDGHNVKWVGGDNTTTV 790

Query: 1102 AMPYVFRYLAAELAAMNIKI 1121
            A+P+V +YL +EL+AM IK+
Sbjct: 791  AIPFVLKYLDSELSAMGIKM 810


>gi|242003016|ref|XP_002422580.1| DNA-directed RNA polymerase I 135 kDa polypeptide, putative
            [Pediculus humanus corporis]
 gi|212505370|gb|EEB09842.1| DNA-directed RNA polymerase I 135 kDa polypeptide, putative
            [Pediculus humanus corporis]
          Length = 1114

 Score =  732 bits (1889), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/1094 (38%), Positives = 631/1094 (57%), Gaps = 95/1094 (8%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CRQ   +Y+G L   + +         + +  +FG+ P+M+K+ RCHL+    ++LV   
Sbjct: 106  CRQRASTYSGNLFGKITWSVNGVNQHPIEK--DFGKIPIMIKSNRCHLKNLTPRELVEKN 163

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            E   E GGYFIL G E++ R +I  ++NYP+++ R +++ R   +++K +++RCV +D++
Sbjct: 164  EHEDEWGGYFILKGHEKLIRMLIATRRNYPIALSRRTWKQRGASFSEKGILLRCVSEDET 223

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            S    L+++ +G+V++        Y +P+ ++LK+L++ +DL +F  LT   D+ +    
Sbjct: 224  STNNVLHFVTDGTVKVMLSYGRSLYFIPLCLILKSLINVSDLYVFKRLTEGRDDDF---- 279

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYY--AVAETVI 275
                       +K +L +V    + T  +    IG+ F+      QS  +    + + ++
Sbjct: 280  ------YFKSCIKTMLYDVHVQGIDTHEEAKCFIGKTFRLKFPD-QSPWFTDAQICDLIM 332

Query: 276  RDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEK 335
               + +HLNDN DKFNLLIFM QKLF+ V      +N DSL  QEIL  G +    LK++
Sbjct: 333  EKCLAIHLNDNKDKFNLLIFMTQKLFAFVQGQCCEENADSLMVQEILTGGSIYQQVLKDR 392

Query: 336  LEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIG---TSIETMLKTGRLA 392
            L+ +L    +L+  +  + GK      L +I ++   +  K+ G    ++   + TG   
Sbjct: 393  LQGFL-NNLRLVASKKLSEGK------LNSISQIQMASFCKRAGGIEKAMNNFVATGNCH 445

Query: 393  TQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPV 452
                  L Q  G  + AE +N +R++S F+A+HRGA F  +RTT  R+LLPE+WGF+CPV
Sbjct: 446  NSLS-GLPQDKGLVIMAENINRMRYMSHFKAIHRGAYFTTMRTTDGRQLLPEAWGFICPV 504

Query: 453  HTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSG 512
            HTPDG PCGLLNH++  C V        N+ D+  ++ ++  VL  +G++P L  + K  
Sbjct: 505  HTPDGSPCGLLNHLSKDCIVT-------NVPDYEILK-NLSCVLTDLGVMP-LEIVEKKN 555

Query: 513  PPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGA-YPG 571
                  VLLDG+++G +  +  + +V  LR LK+   +V+P+ LE+  VP     + YPG
Sbjct: 556  --NYYDVLLDGKLIGYVADTNAQNLVQSLRVLKIEG-NVVPNTLEIVLVPKKDSESQYPG 612

Query: 572  LYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEI--RCPDGGDGGRRNAFPATH 629
            ++LFT P + +RPV N++L        ELIG FEQV++EI  +  +  +G        TH
Sbjct: 613  IFLFTGPNRLMRPVLNLAL-----NKTELIGTFEQVYLEICLKLNEAYEG------LTTH 661

Query: 630  EEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQ 689
            +E+  T  LS +A L P  D NQSPRNMYQCQM KQ+MG  V     +A+ KLY L  P 
Sbjct: 662  KELSHTTFLSNLACLIPMPDCNQSPRNMYQCQMGKQSMGTPVHTWDIQAETKLYRLLLPS 721

Query: 690  TPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTET 749
            +P+ R   Y    +D++P G NA+VAV++YTGYDMEDAMI+NKSS +RG  HG I ++E 
Sbjct: 722  SPLFRPGHYDAIKLDDFPMGVNAVVAVISYTGYDMEDAMIINKSSFERGFGHGTILKSEF 781

Query: 750  IDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWR 809
              L+ D          F R+     L S +D DGLP+ G ++   +P C  ++   + + 
Sbjct: 782  FHLNPDS--------YFERDPSKAELISKLDDDGLPFPGTLVEENDPICCYFNGELSKYV 833

Query: 810  TNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWP 869
                 G E  +VD V +    + N      I FR  RNP++GDKF+SR GQKG+CSQ+WP
Sbjct: 834  VEKFHGKEIAYVDNVRLCCGETLN-SASVCITFRVPRNPVVGDKFASRAGQKGICSQMWP 892

Query: 870  DIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKT 929
              D+PF+  +G+ PD++ NPH FPSRMTIAM++E +A K  S+HGK  DATPF  S    
Sbjct: 893  CEDLPFTD-SGLVPDVVFNPHGFPSRMTIAMMIELMAGKSASVHGKVHDATPFIFS---- 947

Query: 930  NGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMV 989
                   E  S +D  G++L   G+NY+G E +YSGV G E+   IF G VYYQRLRHMV
Sbjct: 948  -------EDNSAIDYFGKLLEAAGYNYYGTEKMYSGVDGREMNAAIFFGIVYYQRLRHMV 1000

Query: 990  SDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHV 1049
             DK+QVRSTG +D +T+QPIKGR+RGGG+RFGEMERDSL++HGA+ LLHDRL  CSD + 
Sbjct: 1001 LDKWQVRSTGPVDTLTQQPIKGRRRGGGVRFGEMERDSLISHGASALLHDRLFECSDKYK 1060

Query: 1050 ADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRY 1109
            A          +A F  P+    +E+             C  C     ++T+ +PY+FRY
Sbjct: 1061 AR---------SALFRCPKTGVKKEV-------------CRLCSDGGNVKTIEIPYIFRY 1098

Query: 1110 LAAELAAMNIKITL 1123
            L  +LAA+NI + +
Sbjct: 1099 LLIQLAAVNIHLKV 1112


>gi|207340417|gb|EDZ68774.1| YPR010Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 835

 Score =  731 bits (1886), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/863 (46%), Positives = 540/863 (62%), Gaps = 64/863 (7%)

Query: 288  DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLI 347
            DKF +L+FM++KL+SLV      DNPD+ Q+QE+LL G L  + LKEK++++L+     +
Sbjct: 1    DKFRMLLFMIRKLYSLVAGECSPDNPDATQHQEVLLGGFLYGMILKEKIDEYLQNIIAQV 60

Query: 348  QDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTV 407
            + +I N G   +F +   + +V+ +  ++ IG+ ++  L T  L +Q+GLDLQQ +GYTV
Sbjct: 61   RMDI-NRGMAINFKDKRYMSRVLMR-VNENIGSKMQYFLSTANLVSQSGLDLQQVSGYTV 118

Query: 408  QAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMT 467
             AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPVHTPDG PCGLLNH  
Sbjct: 119  VAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHFA 178

Query: 468  STCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVG 527
              CR+++         D S+    I  +L  +G+ P+         P++  V +DG+++G
Sbjct: 179  HKCRIST------QQSDVSR----IPSILYSLGVAPASHTFAAG--PSLCCVQIDGKIIG 226

Query: 528  VIPSSEIEKVVAHLRRLKVSAASV-IPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVR 586
             +   + + +   LR  KV   +  +P DLE+GYVP S  G YPGLYLF    + +RPVR
Sbjct: 227  WVSHEQGKIIADTLRYWKVEGKTPGLPIDLEIGYVPPSTRGQYPGLYLFGGHSRMLRPVR 286

Query: 587  NISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTP 646
             + L  E+     ++GPFEQV+M I         + N    TH E  PT +LS++ANLTP
Sbjct: 287  YLPLDKED-----IVGPFEQVYMNIAVTP--QEIQNNVH--THVEFTPTNILSILANLTP 337

Query: 647  YSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEY 706
            +SD NQSPRNMYQCQM KQTMG    AL  R+D KLY LQT QTPIV+ N Y  YG+D +
Sbjct: 338  FSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQTGQTPIVKANLYDDYGMDNF 397

Query: 707  PTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLF 766
            P G NA+VAV++YTGYDM+DAMI+NKS+ +RG  +G +Y+TE +DL+ + N+ D   + F
Sbjct: 398  PNGFNAVVAVISYTGYDMDDAMIINKSADERGFGYGTMYKTEKVDLALNRNRGDPITQHF 457

Query: 767  RRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYV 824
                D   K     +D DGLPY+G  +  G+P C+ +D T N  +  +   SE  +++ V
Sbjct: 458  GFGNDEWPKEWLEKLDEDGLPYIGTYVEEGDPICAYFDDTLNKTKIKTYHSSEPAYIEEV 517

Query: 825  AV--DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMR 882
             +  D  N     Q  +I++R  R P IGDKFSSRHGQKGVCS+ WP IDMPFS  TG++
Sbjct: 518  NLIGDESNKFQELQTVSIKYRIRRTPQIGDKFSSRHGQKGVCSRKWPTIDMPFS-ETGIQ 576

Query: 883  PDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLV 942
            PD+IINPHAFPSRMTI M +ES+A K G+LHG   D+TP+             +E  +  
Sbjct: 577  PDIIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPWI-----------FNEDDTPA 625

Query: 943  DELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMD 1002
            D  GE L   G+NYHG E +YSG  G EL  +I++G VYYQRLRHMV+DKFQVRSTG ++
Sbjct: 626  DYFGEQLAKAGYNYHGNEPMYSGATGEELRADIYVGVVYYQRLRHMVNDKFQVRSTGPVN 685

Query: 1003 QITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTA 1062
             +T QP+KGRKR GGIR GEMERD+L+ HG ++LL DRL   SDY  A VC  CGS+LT 
Sbjct: 686  SLTMQPVKGRKRHGGIRVGEMERDALIGHGTSFLLQDRLLNSSDYTQASVCRECGSILTT 745

Query: 1063 TFIHPQKRAIREIGG-------------LPPARAPKKVTCHACQTSK---------GME- 1099
                P+  +I  +               L  +   +K+     Q  +         G E 
Sbjct: 746  QQSVPRIGSISTVCCRRCSMRFEDAKKLLTKSEDGEKIFIDDSQIWEDGQGNKFVGGNET 805

Query: 1100 -TVAMPYVFRYLAAELAAMNIKI 1121
             TVA+P+V +YL +EL+AM I++
Sbjct: 806  TTVAIPFVLKYLDSELSAMGIRL 828


>gi|339257860|ref|XP_003369116.1| DNA-directed RNA polymerase I subunit RPA2 [Trichinella spiralis]
 gi|316966676|gb|EFV51221.1| DNA-directed RNA polymerase I subunit RPA2 [Trichinella spiralis]
          Length = 1177

 Score =  726 bits (1874), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/1151 (37%), Positives = 641/1151 (55%), Gaps = 103/1151 (8%)

Query: 14   ELVRHHIESFDYMLDEGLSEMFDH------------------------CRQAKISYTGKL 49
            ELV  HI+SF+Y  ++G+++  ++                        CR +  SY+ KL
Sbjct: 38   ELVEPHIKSFNYFAEQGITQAVENPFIGFPAISKDGGDANALKLWPSECRVSCRSYSAKL 97

Query: 50   MADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFIL 109
            +A +  +       V   R N G  P+ML + RCHL      +L+  KEE  EMGGYFI+
Sbjct: 98   LATLTIKI--NNQVVDSARRNLGDIPIMLMSNRCHLTKLSPNQLMKEKEEMNEMGGYFIV 155

Query: 110  NGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNG 169
            NG E+V R +I  ++NY  S+           +    +++     + +S+   + Y  + 
Sbjct: 156  NGQEKVVRMLIAQRRNYVGSLY----------FVSLWLLLGRNGSNVASIIPNMAYHCDV 205

Query: 170  SVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERV 229
               +         + P+G    A  D  D  ++  L   ++E  +  KG V +       
Sbjct: 206  FEIIILSAIISSIICPIGACCYATYDCPDQFLYTELMRSFNED-EFWKGCVVN------- 257

Query: 230  KIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDK 289
              +L +++  +L ++   L ++G  F+  +  + S +     + +I  Y+ VHLN + +K
Sbjct: 258  --MLMDLKSENLNSKADALSYLGRLFRAALPVITSTTNMEAGQILIDRYLCVHLNTDREK 315

Query: 290  FNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQD 349
            F+ LI+  QKL SL     V ++PDS+ NQE+LLPG ++ + LKE+LE  L +  + I D
Sbjct: 316  FDFLIYSAQKLCSLAKEEIVPESPDSIANQEVLLPGMILLLILKERLEIMLTRMCRYIVD 375

Query: 350  EIE-NNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQ 408
             I  ++  +F   ++    K      +  +  ++E  L+TG L +       Q++G+ + 
Sbjct: 376  SIICDSSHQFQARHITTAVKF-----TSLVTRALEYFLRTGNLPSNVHHAFSQQSGFCII 430

Query: 409  AERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTS 468
            AERLN LRF+  FR +HRGA F+ +R+T VRKL  E+WGF+CPVHTPDG PCGLLNH+ +
Sbjct: 431  AERLNHLRFVGHFRGIHRGAFFSEVRSTDVRKLSTEAWGFICPVHTPDGSPCGLLNHLAA 490

Query: 469  TCRVASYYDSRG-NIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVG 527
            +CRV +   SR   I   SK     L  L    M+     L  +       V++DG V+G
Sbjct: 491  SCRVTATQGSRDLVIHAISKFG---LLSLTASAML----NLDSATDQYYYRVIVDGSVIG 543

Query: 528  VIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRN 587
            VI    +++ +  LR+ K S   +        +   +    YPGL++FT   +F+RPV N
Sbjct: 544  VIGEENVQQAIQILRKEKSSGVFLSIFTEICFFSRKTFSMHYPGLFIFTEFGRFMRPVNN 603

Query: 588  ISLPSEESQNIELIGPFEQVFMEIRC--PDGGDGGRRNAFPATHEEIHPTGMLSVVANLT 645
            +S+  E   N E IG  EQ+F+ I C  P+  + G       TH+EI P  +LS  A + 
Sbjct: 604  LSI--EPPSNREYIGTMEQLFLGI-CIGPEDFEEG-----VTTHQEIDPANILSFNAKMI 655

Query: 646  PYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDE 705
            P+ DHNQSPRN+YQCQMAKQTMG  V +L  R D K+Y L+TPQ+P+V+T +Y  Y ID 
Sbjct: 656  PFPDHNQSPRNVYQCQMAKQTMGTPVHSLVHRTDNKMYCLRTPQSPLVKTESYDAYAIDN 715

Query: 706  YPTGTNAIVAVLAYT-----GYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD---DGN 757
            YP GTNAIVAV++YT     GYDMEDAMI+NK+SV+RG  H  IY+TE I+L+D   DG 
Sbjct: 716  YPLGTNAIVAVISYTKLSIQGYDMEDAMIINKASVERGFAHACIYKTERINLNDRLYDGR 775

Query: 758  KVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCS------IYDKTTNSWRTN 811
             V      FRR+    +L + +D DGLP VG++    +P  +      +Y +  + +R  
Sbjct: 776  NV-----FFRRDPADATLSAFVDEDGLPQVGKLYSKNDPLYTGQRNWILYGEKISQFRRC 830

Query: 812  SRKGSESVF-VDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPD 870
             R+  ++ +   +        + +     I   + RNP +GDKF+SRHGQKG+ S LWP 
Sbjct: 831  IRRQYKNYWQCKWCRTVEAYLRYVSCYCKIFGDYHRNPFVGDKFASRHGQKGINSFLWPA 890

Query: 871  IDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTN 930
             +MPF+  +GM PD+I NPH FPSRMT+ M++ES+A K  +LHG   DATPF  S     
Sbjct: 891  ENMPFTE-SGMVPDIIFNPHGFPSRMTVGMMIESMAGKSAALHGIKHDATPFKFS----- 944

Query: 931  GDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVS 990
                 DE  + ++  G++L   G+NY+G E +YSG+ G  L  +IF G VYYQRLRHMVS
Sbjct: 945  -----DEHPA-IEYFGQLLTKAGYNYYGNERMYSGIDGRMLEVDIFFGVVYYQRLRHMVS 998

Query: 991  DKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVA 1050
            DKFQVR+TG +D +T+QP++GRKRGGGIRFGEMERDSL++HG A+LLHDRL   SD   A
Sbjct: 999  DKFQVRATGAVDLLTKQPVQGRKRGGGIRFGEMERDSLISHGTAFLLHDRLFDNSDKDYA 1058

Query: 1051 DVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYL 1110
             +C+ CG +++  F +       +           ++ C  C+TS  +E V  PYV +YL
Sbjct: 1059 CLCTGCGRLISTNFKNFWNNGTHQAPN-AVVSVTSRMICVICKTSDNIEFVQFPYVLKYL 1117

Query: 1111 AAELAAMNIKI 1121
             AEL+++N  +
Sbjct: 1118 IAELSSVNAPV 1128


>gi|123469849|ref|XP_001318134.1| DNA-directed RNA polymerase, beta subunit family protein [Trichomonas
            vaginalis G3]
 gi|121900885|gb|EAY05911.1| DNA-directed RNA polymerase, beta subunit family protein [Trichomonas
            vaginalis G3]
          Length = 1104

 Score =  722 bits (1864), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/1087 (38%), Positives = 595/1087 (54%), Gaps = 83/1087 (7%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR    +Y G L   +E    D   P  +        PVM+ +  CHL+G   Q+  +L 
Sbjct: 79   CRLGGQTYGGSLNIILEAAINDL--PPKKFSVVANNIPVMVNSDLCHLKGLTPQEKGALM 136

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EE  E GGYFI +G E++ R +IL +QNY  ++ R SF  R   +T+ A   R +  D S
Sbjct: 137  EEPTEAGGYFIYSGYEKLLRLLILNRQNYVFALNRPSFHSRGPTFTNFATSFRSMAPDCS 196

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            S+T  ++Y   G++ +   +Q + + +P+ I+L+ALV+ +D  I+  +            
Sbjct: 197  SITTNVHYQNTGNMVVLIPIQRRMFFVPLPILLRALVEVDDRTIYESIC----------- 245

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
            G       S+RV   L    +L + TR      +G HF+ V+   +  +     E +++ 
Sbjct: 246  GQNPDSFYSDRVIATLRYASELDIHTRAGARDFLGAHFRTVLQCPRHFTNEECCEVLLKR 305

Query: 278  YIFVHLNDN--NDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEK 335
             +F HL+D   + KF+LLI+M ++L  LV    + DN D+    E+L PG L    L + 
Sbjct: 306  NLFPHLSDEAPSKKFDLLIYMTRRLLQLVKGEILPDNMDANSAHELLTPGTLWLPALSDA 365

Query: 336  LEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQT 395
            + D+L+     +  + +N    FD      ++ +++KN S  +   +  +  TG L   +
Sbjct: 366  ITDFLKATAANVYKDEKNAIDDFD-----ALQTILKKNASG-VENRMRYLFSTGSLRGNS 419

Query: 396  GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTP 455
             L L Q  G ++ AER+N+ R+++ FR+VHRGA F  ++TT+VR LLPESWGF+CPVHTP
Sbjct: 420  TLGLSQTEGLSIIAERINYCRYLAHFRSVHRGAFFTTMKTTAVRYLLPESWGFMCPVHTP 479

Query: 456  DGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPA 515
            DG  CGLL H+   C + +     G+ + F +    I+++    GM+P L      G   
Sbjct: 480  DGGLCGLLTHLARFCEIVT-----GDSQGFKE----IVQIFTNYGMVPFL------GSGD 524

Query: 516  VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLF 575
            ++ V++DGRVVG I        V  L+  +     +IP   E+  +P   G     +Y+F
Sbjct: 525  MVPVIVDGRVVGSIRERLSSAAVEALKTAR--RKGIIPKMAEIADLPA--GSFTRSIYVF 580

Query: 576  TSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPT 635
             +  + +RPV N+     ++Q  E  GP EQ+FM+I      +          + EIH T
Sbjct: 581  LNQQRMMRPVFNV-----KAQEQEYAGPLEQIFMDIASNPKDES-------KAYREIHHT 628

Query: 636  GMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRT 695
             MLS++A+LTP+SD+NQSPRNMYQCQMAKQTMG+         + K YH+  PQ PIVRT
Sbjct: 629  AMLSLIASLTPFSDYNQSPRNMYQCQMAKQTMGYPSHREAASTEVKTYHVHYPQRPIVRT 688

Query: 696  NTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD 755
                 + ++++  GTNA VAVL+YTGYDMEDA+++NK SV+RG  HG IY+T      + 
Sbjct: 689  MEQDSHALEDFLLGTNACVAVLSYTGYDMEDALLINKCSVERGFGHGCIYKTHRYTAEEI 748

Query: 756  GNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKG 815
                      F   KD   +   +D+DGLP+VGQ +  G     +Y+   N  R  S K 
Sbjct: 749  -----ESNSYFCNTKDGVIVDPDLDADGLPFVGQRVSKGCKLLRVYNPKENKERIMSYKD 803

Query: 816  SESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPF 875
             E  FVD V     +         ++FR  R P IGDKFSSRHGQKGV S  WP  +MPF
Sbjct: 804  GEDGFVDKVITTTSDDGKRVLSVVLKFRMVRTPTIGDKFSSRHGQKGVFSFPWPQENMPF 863

Query: 876  SGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK-GGSLHGKFMDATPFANSVKKTNGDTG 934
                G+ PD+IINPHAFPSRMTI ML+ES+  K   S    F DATPF +          
Sbjct: 864  CE-NGITPDVIINPHAFPSRMTIGMLIESMCGKLRASQDCAFFDATPFTH---------- 912

Query: 935  TDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQ 994
             DE   + DE+G+ML   GF Y+G E +YSG+ G +   +IF+G VYYQRLRHMV DK+Q
Sbjct: 913  -DEKNRITDEVGQMLAKEGFEYYGNEAMYSGITGEQFKADIFMGVVYYQRLRHMVGDKYQ 971

Query: 995  VRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCS 1054
            VR+TG M+ ITRQP+KGRK+GGGIR GEMERD LLA G  +LL DR   CSD HVA +C+
Sbjct: 972  VRATGKMNNITRQPLKGRKKGGGIRLGEMERDGLLAQGVTFLLRDRFMWCSDGHVAKLCN 1031

Query: 1055 LCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAEL 1114
             CGS +     H +                ++  C  C+ S    +V +PYV RYL AE 
Sbjct: 1032 RCGSFMFTQTKHDEN-------------GVEETYCTYCKKSGNCTSVYVPYVLRYLCAEF 1078

Query: 1115 AAMNIKI 1121
            AAMNI++
Sbjct: 1079 AAMNIRM 1085


>gi|195147244|ref|XP_002014590.1| GL18874 [Drosophila persimilis]
 gi|194106543|gb|EDW28586.1| GL18874 [Drosophila persimilis]
          Length = 1127

 Score =  721 bits (1862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/1100 (38%), Positives = 621/1100 (56%), Gaps = 88/1100 (8%)

Query: 39   RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
            RQ   SY+G  M  V   +   G        + G+ PVML+++ C+L     Q++V   E
Sbjct: 100  RQLHASYSG--MCSVRLAWSVNGLQKTPINMDLGEVPVMLRSKACNLGKGTPQEMVKHGE 157

Query: 99   EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
               E GG F++ G E++ R ++L ++N+P+ + RS+++DR + ++D  ++++ VR D+ S
Sbjct: 158  HDTEWGGIFVIRGNEKIVRMLVLVRRNHPICVKRSTWKDRGQNFSDLGIMVQTVRDDECS 217

Query: 159  VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKG 218
             +  L+YL NG+ R  F    +   +PV ++LK L+D  D EI+N L     + Y+K++ 
Sbjct: 218  FSNVLHYLNNGTARFMFSHIKRLSYVPVCLILKCLMDYTDEEIYNRLV----QGYEKDQY 273

Query: 219  AVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI--- 275
             V S      V+ +L +V +  + T  QC      H+ P+   LQ  +  A         
Sbjct: 274  YVSS------VQTMLRDVHNEGVYTHAQCRV---LHWHPLPVSLQRRARVAARRGRHRLY 324

Query: 276  --RDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLK 333
              R ++           +      +   S    ++          QE+LLPGHL   YL 
Sbjct: 325  SARTHLGSPWTPTKRSSSSSSLWCRSSSSAPRASTRWKTLTRPMMQEVLLPGHLYQKYLG 384

Query: 334  EKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLAT 393
            E++E+W+   ++++Q ++            + + + M +  +  +G SIE+ L TG +A+
Sbjct: 385  ERIENWVAMVRRVLQKKLSTPD---SLLTSSILTQSMRQ--AGGVGKSIESFLATGNIAS 439

Query: 394  QTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVH 453
             TGL L Q +G  + AE +N +R++S FRA+HRG+ F  +RTT  R+LLP++WGF+CPVH
Sbjct: 440  NTGLGLMQNSGLVIMAENINRMRYMSHFRAIHRGSYFTTMRTTEARQLLPDAWGFICPVH 499

Query: 454  TPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGP 513
            TPDG PCGLLNH+T TC ++   D         K+  +I   LI +GM+P      ++  
Sbjct: 500  TPDGTPCGLLNHLTLTCEISKRPDP--------KLVQAIPPKLIEMGMLPL--SCQRNPD 549

Query: 514  PAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLY 573
              +  VLLDG+ +G I  S+  K+V  LR  K++ A  +P  +E+G++P    G +PGLY
Sbjct: 550  SKMYVVLLDGKHLGHIFQSDACKIVEDLRYEKITGA--VPQMMEIGFIPFKKNGQFPGLY 607

Query: 574  LFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFP--ATHEE 631
            L T P + +RPV NI       + +E IG  EQ++MEI          +  +P   TH E
Sbjct: 608  LSTGPARMMRPVWNIKW-----KQVEYIGTLEQLYMEIAIDP------KEMYPDFTTHLE 656

Query: 632  IHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTP 691
            +  T  +S +ANL P  D+NQSPRNMYQCQM KQTMG        +A  KLY LQTP TP
Sbjct: 657  LAKTHFMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQTPGTP 716

Query: 692  IVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETID 751
            + R   Y    +D++  GTNAIVAV++YTGYDMEDAMI+NKS+ +RG  +G IY+++ + 
Sbjct: 717  LFRPVHYDNIQLDDFAMGTNAIVAVISYTGYDMEDAMIINKSAYERGFAYGSIYKSKFVQ 776

Query: 752  LSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTN 811
            L        +    F R+     L   +D+DGLP+ G  +  G P    +D    +++  
Sbjct: 777  LP-------KKSSYFARHPHMPELAKYLDTDGLPHPGAKLTFGCPLYCYFDGEVATYKVE 829

Query: 812  SRKGSESVFVDYV----AVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQL 867
                 E  FVD +    + D+   K +     I  R  R   IGDKF+SR GQKG+CSQ 
Sbjct: 830  KMDEKEECFVDSIRQLGSFDLTPKKTV----CITLRVPRPATIGDKFASRAGQKGICSQK 885

Query: 868  WPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVK 927
            +P  D+PF+  +GM PD++ NPH FPSRMTIAM++E++A K  ++HG   DATPF  S K
Sbjct: 886  YPAEDLPFTE-SGMIPDIVFNPHGFPSRMTIAMMIETMAGKSAAVHGGVYDATPFRFSEK 944

Query: 928  KTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRH 987
             T            +D  G+ML   G+NY+G E LYSGV G E+T +IF G V+YQRLRH
Sbjct: 945  NT-----------AIDYFGKMLEAGGYNYYGTERLYSGVDGREMTADIFFGVVHYQRLRH 993

Query: 988  MVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDY 1047
            MV DK+QVRSTGT++  T+QPIKGRKRGGG+RFGEMERD+L++HGAA+LL DRL   SD 
Sbjct: 994  MVFDKWQVRSTGTVEARTQQPIKGRKRGGGVRFGEMERDALISHGAAFLLQDRLFHNSDK 1053

Query: 1048 HVADVCSLCGSVLTATFIHPQKRAIR--EIGGLPPARAPKKVTCHACQTSKGMETVAMPY 1105
                VC  CGS+L+     P ++ I+  E GGL    + K  TC  C  S  +  + +P+
Sbjct: 1054 THTLVCHSCGSILS-----PLQQIIKRNERGGL----SSKPQTCRLCGDSSSVSMIEIPF 1104

Query: 1106 VFRYLAAELAAMNIKITLQL 1125
             F++L  EL+++NI    +L
Sbjct: 1105 SFKFLVTELSSVNINARFKL 1124


>gi|402467026|gb|EJW02400.1| hypothetical protein EDEG_03169 [Edhazardia aedis USNM 41457]
          Length = 1197

 Score =  721 bits (1861), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/1216 (36%), Positives = 636/1216 (52%), Gaps = 217/1216 (17%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLV-S 95
             CR   ISY GKL   ++    D  +  +    +FG  PVM+K+++CHL G    ++   
Sbjct: 72   ECRIRGISYKGKLSGRLKCTINDNQAFEISR--SFGNLPVMVKSKKCHLHGKSGAEIAKE 129

Query: 96   LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
              E+  E+GGYFI NG E+  R ++ PK+NY   ++R S   +   +T+ AV  RCV +D
Sbjct: 130  FGEDPREIGGYFIYNGNEKCVRLLVAPKRNYLFGIIRESNAKKGTNFTEYAVTARCVGED 189

Query: 156  QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFN------------ 203
            ++   +  +YL++G++ +  +   K + +PV ++LK+L++  D EIF+            
Sbjct: 190  ETGTMMAFHYLIDGNICIRLYYMQKAFYIPVMLLLKSLMEVTDKEIFDAIIGEDLRFSAT 249

Query: 204  --HLTCCYDEKY-KKEKGAVGSPLVSE----------------------------RVKII 232
               L+   +E + + E+   GS  VSE                            RV+ +
Sbjct: 250  PRSLSGSEEEDFDRSEQEEDGSIDVSEVKNNGKIKGNKTQSKNLSPDRFHTMDVKRVQNL 309

Query: 233  LAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNL 292
            +    D++L ++ +C+ +IG  F+ +++  +     A  E VI  +I +HLN   DKFN 
Sbjct: 310  ILSFNDMNLNSQQECINYIGARFKTIVNEREYSDQEAFTE-VINRFIAIHLNKKEDKFNF 368

Query: 293  LIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIE 352
            LI  ++KL+ LV++  + DNPD    QE+     +    LKEK+ + LR  K ++  E  
Sbjct: 369  LIVGIRKLYKLVNN-KIPDNPDLQSTQELFTTCQIFATLLKEKMYEVLRMLKPVLSREKR 427

Query: 353  NNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERL 412
                    F++  + K ++K  +  IG  IE ++ TG  + +   D  ++AG T  AER+
Sbjct: 428  --------FSVDVVTKAIKK-ANMDIGVKIEHLITTGNASIKMSSDFTEKAGNTTLAERI 478

Query: 413  NFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRV 472
            NF R++S FR+V+RG  FA L+TT++RKL PESWGF CPVHTPDG PCG++ H+  T +V
Sbjct: 479  NFFRYLSHFRSVNRGNFFAQLKTTTIRKLRPESWGFYCPVHTPDGSPCGIITHLAHTTKV 538

Query: 473  AS---YYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVI 529
             S   ++D +                L  +G+IP L   +K    + + V LDGR++G +
Sbjct: 539  ISQPTFFDEK---------------FLFDLGVIPLLRGCIKK--QSFIEVFLDGRLMGYV 581

Query: 530  PSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL--GGAYPGLYLFTSPPKFVRPVRN 587
                    V  LR+ +          +E+ +VP       AYPG+++F S  + +RPV N
Sbjct: 582  DDFFSVDFVNKLRKHRADFKLT----MEIVFVPHDSHEKSAYPGIFIFNSRGRLMRPVLN 637

Query: 588  ISLPSEESQNIELIGPFEQVFMEIR------------------------CPDGGDG---- 619
                   S  +E IG  EQVF+ I+                        C +  D     
Sbjct: 638  ------SSDQVEFIGIMEQVFLHIKSAQKNSIIKDYTNSLAEKNLEKQSCANSTDNIDKL 691

Query: 620  --------------GRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQ 665
                           + N    +++E   T  LS+VAN TP+SD NQSPRNMYQCQMAKQ
Sbjct: 692  LTENNFQININNTIKQSNTLCNSYKETESTDFLSIVANFTPFSDFNQSPRNMYQCQMAKQ 751

Query: 666  TMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDME 725
            TMG S    K R++ K Y L  PQ+P++ T  Y  Y +D YP G NAIVAVL+YT YDME
Sbjct: 752  TMGTSHHNYKSRSENKSYRLIGPQSPLISTKIYKYYKMDNYPMGINAIVAVLSYTAYDME 811

Query: 726  DAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLP 785
            DAM++NKSS++RG  HG +Y+TE +DL    NK +R                 ID   +P
Sbjct: 812  DAMVINKSSIERGFFHGTVYKTERVDLQ---NKKER----------------FID---MP 849

Query: 786  YVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAV-DMKNSKNLPQKANIRFRH 844
             +G  +   + + + Y K     +  + +GSES  VD V V + K+++ L     +R + 
Sbjct: 850  NIGDKLSLNDKFYT-YLKENGETKIITYQGSESGIVDTVRVFNSKDNEGLSMSVTLRIQ- 907

Query: 845  TRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLES 904
             RNP IGDKF SRHGQKGVCS  WP +DMPF+   G+ PD+IINPHAFPSRMTI ML+ES
Sbjct: 908  -RNPNIGDKFCSRHGQKGVCSMHWPLVDMPFTE-DGIVPDIIINPHAFPSRMTIGMLIES 965

Query: 905  VAAKGGSLHGKFMDATPFA--------------------------------NSVKKTNGD 932
            +A K  +L GK  D +PF                                 N  KK   D
Sbjct: 966  MAGKACALSGKTYDGSPFQFNITSDNNKKNIKSTNHKQTTSKSTYKTEKKINRNKKEKSD 1025

Query: 933  TGTDESK---SLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMV 989
            T  D S    S VD  G+ L   G+NYHG E +YSGV G E   +IFIG VYYQRLRHMV
Sbjct: 1026 TNEDTSVQDISAVDYFGQELIKYGYNYHGNETMYSGVTGDEFKADIFIGVVYYQRLRHMV 1085

Query: 990  SDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHV 1049
            +DKFQVR+TG + ++TRQP  GRKR GGIR GEMERD+L+ HG + +L +RL   SD+ +
Sbjct: 1086 NDKFQVRTTGGLQKLTRQPTGGRKRKGGIRLGEMERDALIGHGVSAILKERLLYASDHTI 1145

Query: 1050 ADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRY 1109
             D C  C S+L   F+                 + +K  C     S  ++ +++PYVF+Y
Sbjct: 1146 FDYCCGCKSIL---FV-----------------SNEKCIC----GSTIIKQISLPYVFKY 1181

Query: 1110 LAAELAAMNIKITLQL 1125
            +  EL +MNIKI L +
Sbjct: 1182 MCTELLSMNIKIMLDV 1197


>gi|323448349|gb|EGB04249.1| hypothetical protein AURANDRAFT_55255 [Aureococcus anophagefferens]
          Length = 1148

 Score =  718 bits (1854), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/1135 (39%), Positives = 635/1135 (55%), Gaps = 120/1135 (10%)

Query: 39   RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
            R+ K++Y+  +  DV F+    G  V     + G  P+M+ + RCHL G     L+S +E
Sbjct: 78   RECKVTYSAPM--DVTFECCVDGRTVEIFTRSIGHLPIMVLSHRCHLWGLKKNGLISSRE 135

Query: 99   EAAEMGGYFILNGLERVFRSV-ILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            E  E GGYFI+NGLE++ R + ++P +N  +++ R ++R+R   +T+ AV++RC R DQS
Sbjct: 136  EDFEYGGYFIVNGLEKILRLLQVVPMRNMALAIKRPAYRNRGTFFTEYAVMMRCARPDQS 195

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            + T+ L+YL NG++RL   ++ +E ++P+ I+LKAL       +       Y +      
Sbjct: 196  TCTITLHYLSNGTLRLRVSIRKQEMMIPLCIILKALQPGISDRVV------YAQIIGDSG 249

Query: 218  GAV---GSPLVSERVKI-ILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESY--YAVA 271
            GA+   G+P V   ++   +A   + +  +    +  +G  F     G   E      V 
Sbjct: 250  GAINALGAPQVERMLRDHAMAPYFEENDHSSKSAISILGSMFLNFFFGYFPEGTDNATVG 309

Query: 272  ETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIY 331
            +  IR +I VH++D   K ++L+ M +KL     +    DN DSL  QE+LLPGHL++ +
Sbjct: 310  QFFIRRFIAVHVDDFLSKHDVLVLMARKLCCFARNECCEDNIDSLGYQELLLPGHLLSAF 369

Query: 332  LKEKLEDWLRKGKKLIQDE----IENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLK 387
            + EKL + L +    +Q E     ++   K  +  LA   K + +  S  I   + ++L 
Sbjct: 370  VTEKLGESLTQAASHVQREARIDFDDIASKLRYEPLAYCGKTIGRY-SGIICDKVSSLLA 428

Query: 388  TGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWG 447
            +G L + +GLDLQQ  G+ + AERLN  R+ S FR+VHRG  F  ++TT+VRKLLPE+WG
Sbjct: 429  SGNLVSSSGLDLQQTTGFAIVAERLNKWRYFSHFRSVHRGQFFTTMKTTAVRKLLPEAWG 488

Query: 448  FLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGN-IRDFSKMRTSILRVLIGVGMIPSLP 506
            FLCPVHTPDG PCGLL+H+T+   +     SR N I   S++    L +++ +GM P+  
Sbjct: 489  FLCPVHTPDGGPCGLLSHLTARAHIIC---SRSNSIHAHSRL----LDIIVSLGMAPNHT 541

Query: 507  K--------LVKSGP---PAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDD 555
                     LV S      + L++ LDG ++G  P     K+   LRRLK ++A  +  D
Sbjct: 542  SSCGIDCTFLVLSRQRICDSTLNICLDGVLLGSAPCLVCAKISDALRRLKANSAFRLGLD 601

Query: 556  --LEVGYV---PLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFME 610
              LE+ ++   P +    +PGLYLF+   + VRPV      S+    IELIGPFEQ+ ++
Sbjct: 602  PTLEIAFIDQGPTN-SSPFPGLYLFSQAARCVRPVIQCGTESK----IELIGPFEQMTLQ 656

Query: 611  IRC------PDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAK 664
            I C         GD     A   TH EI P+ MLSV+A+LTP+SD N             
Sbjct: 657  IACNFRGLKSGVGDTSPSGASAETHAEIDPSNMLSVLASLTPFSDFN------------- 703

Query: 665  QTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDM 724
                            KLY + TPQ P+V T+ YT    + Y  GTN++VAV++YTGYDM
Sbjct: 704  ---------------HKLYRILTPQAPLVCTHDYTTSNFNLYAQGTNSVVAVISYTGYDM 748

Query: 725  EDAMILNKSSVDRGMCHGQIYQTETIDLSDDGN-KVDRGQK------LFRRNK--DAKSL 775
            EDAMI+NKS+  RG  HG +Y+   +DL  + + + D+ Q       LF        +  
Sbjct: 749  EDAMIINKSAYQRGFGHGVVYKNVIVDLDLEADRRRDQSQSEPADFLLFGSPPPISTQKT 808

Query: 776  HSVIDSDGLPYVGQMIHPGEP-YCSIYDKTTNSWRTNSRKGSESVFVD---YVAVDMKNS 831
             S I  DGLP +GQ I  G+  +C+ Y+ +         K +E+ +VD   ++    K  
Sbjct: 809  TSYIGEDGLPEIGQKICHGDSLWCAFYELSCKKV-IGVHKDAETAYVDAVRFIGHANKGQ 867

Query: 832  KNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHA 891
            K++ +KA+I  R  RNP+IGDKFSSRHGQKGV S LWP+ DMPF+  +G+ PD++INPHA
Sbjct: 868  KSIQRKASITLRFPRNPVIGDKFSSRHGQKGVLSVLWPECDMPFTE-SGITPDILINPHA 926

Query: 892  FPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRT 951
            FPSRMTI ML+ES+A K  SL G   D TPF       +GD         +D  G  L  
Sbjct: 927  FPSRMTIGMLVESMAGKSASLQGNHQDGTPFI-----FHGDCNA------IDYFGSQLCA 975

Query: 952  CGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKG 1011
             G+ Y G E +YSG  G  +  +IFIG VYYQRLRHMVSDK QVRSTG + Q+T QPIKG
Sbjct: 976  AGYEYFGSEAVYSGFSGLLVRMQIFIGVVYYQRLRHMVSDKSQVRSTGPVHQLTHQPIKG 1035

Query: 1012 RKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCS--LCGSVLTATFIHPQK 1069
            RKR GGIR GEMERD+LLAHG A+LLHDRL  CSD H A  C+   CGS+LT     PQ+
Sbjct: 1036 RKRHGGIRLGEMERDALLAHGVAFLLHDRLVFCSDGHRARACANQNCGSLLT-----PQR 1090

Query: 1070 RAIREIGGLPPAR-APKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITL 1123
                   G   AR   +  TC  C       T+AMPYV+RYL  ELA MNIK+ L
Sbjct: 1091 CPTTFATGT--ARGCDESFTCCECGGVH-FFTLAMPYVYRYLTNELAGMNIKLNL 1142


>gi|358334878|dbj|GAA28300.2| DNA-directed RNA polymerase I subunit RPA2 [Clonorchis sinensis]
          Length = 1153

 Score =  717 bits (1851), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/1141 (38%), Positives = 625/1141 (54%), Gaps = 95/1141 (8%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR+   +Y   L  +V        + V+      G+ P+M+ +R C+L   +  +     
Sbjct: 3    CRRQGTTYGATLRLNVRLSINGTAASVLE--IPCGEVPIMVLSRACNLSKLNRAEFPKHL 60

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EE  E+GGYFI+NG ERV R +I+ ++N+P+++ R SF+ R  GY++ A+++RCVR+D++
Sbjct: 61   EEEREIGGYFIVNGKERVLRLLIMTRRNFPLAISRPSFKRRGTGYSEFAIIMRCVREDEA 120

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
              T+ L++L+NG   L F ++ +++ +P+ I+L+A+V+  + E+F+ +           +
Sbjct: 121  VSTMMLHWLMNGEPVLAFIVEREQFFVPISILLRAMVNKTEFEMFDDI----------RR 170

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
            G+  S  + E    IL  ++D   +++ + L ++G  F+  +    S +       +IR 
Sbjct: 171  GSGESLSLEETAMRILVRLKDEDYSSQTRALSYMGRLFRGRMRLPTSATDEDAGIFLIRR 230

Query: 278  YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
            YI +HL+   DK++LL FM++KL + V      +  D+L  QE+LLP  L    L+EK+ 
Sbjct: 231  YIGIHLDSFVDKYHLLCFMIRKLHAFVSGQCCEETNDNLMFQEVLLPSTLYLQVLREKIR 290

Query: 338  DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
              L   K  I      N  K +   L   + ++ + P  +IG+++  +L TG L      
Sbjct: 291  QLLDNTKDHILARSRKNKVKINSTLLQ--QSLLSRAP--EIGSAMTYLLSTGNLPPTLRS 346

Query: 398  DLQ-----QRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPV 452
            DL      Q +G +V A+ +NFLR  + FRAVHRGA F  +RTTSVR+LLPE+WGF+CPV
Sbjct: 347  DLAAQFGGQASGLSVPADNVNFLRLAAQFRAVHRGAMFTDIRTTSVRRLLPEAWGFICPV 406

Query: 453  HTPDGEPCGLLNHMT----STCRVA--SYYDSRGNIRDFSKMRTSIL-RVLIGVGMIPSL 505
            HTPDG PCGLLNH+     + C     S  D+       +K+R+  L R L GV      
Sbjct: 407  HTPDGAPCGLLNHLAEPVEAVCETPKHSTNDALAAWLTSNKLRSVELSRQLSGV------ 460

Query: 506  PKLVKSGPPAVLSVLLDGRVVGVIPS-SEIEKVVAHLRRLKVSAASV-IPDDLEVGYVPL 563
                 +     L VLLDGR+VG + S  E E++   LR LK+   S  +P  LE+  VP 
Sbjct: 461  -----TEAQNALPVLLDGRLVGWLSSLIEAEQLADELRDLKLDTQSKHVPYSLEIALVPP 515

Query: 564  S-LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN--IELIGPFEQVFMEIRCPDGGDGG 620
            + +G  YPGL+LFT   + +RPV+N+   ++      +E IG FEQ +++I      +  
Sbjct: 516  TDVGSQYPGLFLFTGGSRLLRPVKNVRHGNQPEAGGLVEWIGTFEQPYLDIAVTQE-ELQ 574

Query: 621  RRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQ 680
             R     +H E+ P G+ S VA LTPY D NQSPRNMYQCQMAKQTMG S    + R+D 
Sbjct: 575  ERPEGAQSHMELTPEGIFSFVAGLTPYQDFNQSPRNMYQCQMAKQTMGHSCYTWRHRSDV 634

Query: 681  KLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMC 740
            K Y L TPQ+P+VRT TY KY ID YP G NAIVAV++YTGYDMEDAM++NK S +RG+ 
Sbjct: 635  KAYRLLTPQSPLVRTKTYVKYDIDHYPLGFNAIVAVMSYTGYDMEDAMVINKGSYERGLA 694

Query: 741  HGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSV---------IDSDGLPYVGQMI 791
               IY++E +DLS    +     + F R K   + H           +D DG P VG  +
Sbjct: 695  GACIYKSEVLDLSVLNKQAISKSQGFARRKTVAAEHYFGTPNQPPPGLDLDGFPPVGTRL 754

Query: 792  HPGEP--YCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPI 849
             PG    YC  + +T ++       G +  +VD ++++   S      A I  R  R P 
Sbjct: 755  EPGVSALYCYTHVETQHTTIVKYEGGEQIAYVDAISLNGSWS-----HATITLRLPRPPD 809

Query: 850  IGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKG 909
            IGDK+SSRHGQKG+ S L P  +MP+S  +G+ PDLI NPH FP+RMT+ M++E +A K 
Sbjct: 810  IGDKYSSRHGQKGINSLLVPSDEMPWSVTSGVVPDLIFNPHGFPTRMTMGMMVEFLAGKS 869

Query: 910  GSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGT 969
             +L GK +DATPF  +    +    TD  + L D        CGFNY G E++ SG  G 
Sbjct: 870  AALTGKRVDATPFQWT---EDNPPFTDYCRQLAD--------CGFNYWGTEMMMSGCNGR 918

Query: 970  ELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLL 1029
            +L   I+IG VYYQRLRHMV+DK+QVRS G  D I RQPIKGRK GGGIR GEMERD LL
Sbjct: 919  QLEAHIYIGVVYYQRLRHMVADKYQVRSQGRFDPILRQPIKGRKVGGGIRLGEMERDCLL 978

Query: 1030 AHGAAYLLHDRL-HTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKV- 1087
            + G ++ L DR+  +  D      C  CGS++                GL    A     
Sbjct: 979  SQGLSFTLQDRMVDSNCDTVTMLACKKCGSLVHTDLARNVSSNEELSTGLLGVSAMGNAE 1038

Query: 1088 ----------TCHAC-----------QTSKGMETVAMPYVFRYLAAELAAMNIKITLQLG 1126
                      +C  C            T   ++ V +   FRYL  EL+ MNI+  L L 
Sbjct: 1039 SSGPFNRHLWSCRLCDRSEVDPSFIGNTKAHLKRVRVSAAFRYLVYELSCMNIQTHLTLS 1098

Query: 1127 D 1127
            D
Sbjct: 1099 D 1099


>gi|307168561|gb|EFN61619.1| DNA-directed RNA polymerase I subunit RPA2 [Camponotus floridanus]
          Length = 1075

 Score =  716 bits (1848), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/1094 (38%), Positives = 608/1094 (55%), Gaps = 128/1094 (11%)

Query: 39   RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
            RQ   +Y GK++  V+ ++   G        + G  P+MLK+ RCHL     ++LV+  E
Sbjct: 100  RQRGTTYKGKII--VKLKWSINGKEQEALESDLGGIPIMLKSNRCHLNKMSPKELVAHGE 157

Query: 99   EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
               E GGYFI+ G+ER+ R +I+ ++NYP+++ R  ++ R E ++D              
Sbjct: 158  HEQEWGGYFIVRGIERLIRMLIMTRRNYPIAIKRPIWKTRGEQFSD-------------- 203

Query: 159  VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTC-CYDEKYKKEK 217
                                               +D  D+ I+  L   C D+ Y    
Sbjct: 204  -----------------------------------LDVTDVYIYKTLIAGCEDDHY---- 224

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESY-YAVAETVIR 276
                    +  V  +L  + +  L    QC  ++G+ F+     L +++    V   +I+
Sbjct: 225  -------YNNSVMNMLRNLHEEGLHWHEQCKAYVGKIFKVKFSELPADATDIDVCNYIIK 277

Query: 277  DYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
              + +HL++  DKF+LL+FM +KLF+L  +    +  DS+  QE LL GHL    LKEKL
Sbjct: 278  YCVAIHLDEPIDKFHLLVFMTKKLFTLAGNKCAVEGVDSVMMQECLLGGHLYLQVLKEKL 337

Query: 337  EDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
              WL   K  I    ++ G K+    L  + K+ +      I   +E  L TG + + + 
Sbjct: 338  WSWLTNVKIHILKLAKSAGNKY-ILTLQEMLKITKFR--SNIDAQMEYFLATGSIRSSSS 394

Query: 397  LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
            + L Q +G TV  E +N +R++S FRA+HRGA F G+RTT VR+LLP++WGF+CP+HTPD
Sbjct: 395  IGLMQNSGLTVVVENINRMRYMSHFRAIHRGAFFQGMRTTEVRRLLPDAWGFICPIHTPD 454

Query: 457  GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAV 516
            G PCGLLNH+T  C V  + D          ++ +I  +LI +GMIP     +       
Sbjct: 455  GAPCGLLNHLTMNCIVTKHPDP--------NLKAAIPGILIELGMIPLS---IADNWENS 503

Query: 517  LSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVP-LSLGGAYPGLYLF 575
             +V+LDG+V+G+I +  I KVV  LR LK+     IP  LE+  VP   +   YPGL+LF
Sbjct: 504  YTVMLDGKVIGLIENKIINKVVYRLRLLKIKGQE-IPSTLEIALVPKRKVPSQYPGLFLF 562

Query: 576  TSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC--PDGGDGGRRNAFPA--THEE 631
            T+  + +RPV N+++     Q IELIG FEQ++M+I C  P+        A+P   TH+E
Sbjct: 563  TNATRMMRPVINLAV-----QQIELIGTFEQIYMDI-CVLPE-------EAYPGLTTHQE 609

Query: 632  IHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTP 691
            +  T + S +A L P  D NQSPRNMYQCQM KQTMG      + ++  KLY LQTP  P
Sbjct: 610  VSQTTIFSNLAKLIPLPDCNQSPRNMYQCQMGKQTMGTPCYNWQQQSQTKLYRLQTPAAP 669

Query: 692  IVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETID 751
            + R   Y    +D+Y  GTNAI+AV++YTGYDMEDAM++NK+S +RG  +G +Y++E +D
Sbjct: 670  LFRPVHYDNINMDDYAMGTNAIIAVISYTGYDMEDAMVINKASYERGFGYGTVYKSEFVD 729

Query: 752  LSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTN 811
            L D        +  F  + D   L   +D DGLP +G  I  G+PY   YD    ++   
Sbjct: 730  LKDK-------KSYFACDPDKPELGKTLDIDGLPIIGASIKEGDPYYCFYDADNANYVVG 782

Query: 812  SRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDI 871
              K +E+ ++D V +    +   P++A I FR  RNPI+GDKF+SR GQKG+ S+L+P  
Sbjct: 783  RYKSTENTYIDNVKLCGSFNTQDPRRACITFRIPRNPIVGDKFASRAGQKGILSRLYPAE 842

Query: 872  DMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNG 931
            D+PF+  TGM PD+I NPH FPSRMTIAM++E +A K  ++HG   DATPF         
Sbjct: 843  DLPFTE-TGMVPDIIFNPHGFPSRMTIAMMIEVMAGKSAAVHGLVHDATPFK-------- 893

Query: 932  DTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSD 991
                DE  + +D  G +L   G+NY+G E +YSG+YG E+   IF G V+YQRLRHMVSD
Sbjct: 894  ---FDEENTAIDYFGRLLELGGYNYYGTERMYSGIYGCEMEASIFFGMVHYQRLRHMVSD 950

Query: 992  KFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVAD 1051
            K+QVRSTG +DQ+TRQPIKGR+RGGG+RFGEMERD+L++HG +YLL DRL  CSD   + 
Sbjct: 951  KWQVRSTGPIDQLTRQPIKGRRRGGGVRFGEMERDALISHGCSYLLQDRLFHCSDKMTSL 1010

Query: 1052 VCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLA 1111
             C  CGS+L    I            +          C  C     +  + +PY+FR+L 
Sbjct: 1011 ACQKCGSILGPELI------------MNSTHEEDDKRCRLCGEEDNVNEIEIPYIFRFLL 1058

Query: 1112 AELAAMNIKITLQL 1125
             +LA+ NI + L+ 
Sbjct: 1059 IQLASCNINVKLKF 1072


>gi|341899204|gb|EGT55139.1| hypothetical protein CAEBREN_31579 [Caenorhabditis brenneri]
          Length = 1052

 Score =  712 bits (1838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/974 (40%), Positives = 561/974 (57%), Gaps = 77/974 (7%)

Query: 173  LGFWLQG--------KEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPL 224
             G+W           K + +P+  V+KAL D ND  I              ++G      
Sbjct: 122  FGYWYDATGTFNSEEKFFYVPLMYVVKALTDKNDAVIAAGF----------KRGRPQDQF 171

Query: 225  VSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQS--ESYYAVAETVIRDYIFVH 282
             S  +  +LA+ Q+  +  +   L+ IG  F+  I    +  E        +IR+ + +H
Sbjct: 172  FSSCILNMLAQCQEEGILNQQSALRAIGSRFRVAISDRVAPWEDDLEAGRFIIRECVLIH 231

Query: 283  LNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRK 342
            LN + +KF  L +M QKL +LV      + PD+ Q QE  + GH++ + L+E++E+ +  
Sbjct: 232  LNSDEEKFFTLAYMAQKLIALVKGECAPETPDNPQFQEASVSGHILLLILRERMENII-- 289

Query: 343  GKKLIQDEIENNGKKFDF-FNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQ 401
               +++ ++E    K DF    A I K +  +   +I   +   L TG L T+ GL LQQ
Sbjct: 290  --GMVRRKLEFMSAKNDFILTSAAIIKALGNHNGGEITRGMAYFLATGNLVTRVGLALQQ 347

Query: 402  RAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCG 461
             +G++V AER+N LRF+S FRA+HRGA F  +RTT VRKL PE+WGF+CPVHTPDG PCG
Sbjct: 348  ESGFSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICPVHTPDGAPCG 407

Query: 462  LLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPA--VLSV 519
            LLNH+T++CR+ ++     N+            +L  +GM     K V   PP   +  V
Sbjct: 408  LLNHVTASCRIVTHLTDNSNVP----------AMLAELGMYTQ--KTVTLAPPGEELYPV 455

Query: 520  LLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS-----LGGAYPGLYL 574
            L+DGR +G +P ++   +  +LR  KV+  + IP   E+  V  S     +   YPG+Y+
Sbjct: 456  LMDGRFIGYVPIAKAASIERYLRCAKVAKDARIPYTAEIALVRRSTDIKNIQTQYPGIYI 515

Query: 575  FTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEEIH 633
             + P + +RPVRN+++ +     +E IG FEQV++ +   P+  + G        H+E+H
Sbjct: 516  LSDPGRLIRPVRNLAMDT-----VEQIGTFEQVYLSVVIDPEEAEPG-----VTMHQELH 565

Query: 634  PTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIV 693
            P+ + S   NL P+ DHNQSPRN+YQCQM KQTMG +V +   RAD K+Y LQ PQ P++
Sbjct: 566  PSCLFSFAGNLIPFPDHNQSPRNVYQCQMGKQTMGTAVHSWHSRADNKMYRLQFPQQPLL 625

Query: 694  RTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLS 753
            +   Y KY +DEYP GTNA VAV++YTGYDMEDAM +NK+S  RG  HG + + E I+L 
Sbjct: 626  KLEAYEKYEMDEYPLGTNACVAVISYTGYDMEDAMTINKASYQRGFAHGTVIKVERINLV 685

Query: 754  DDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR 813
             +  K    + +F +N   +     + SDGLP  G+     E Y   Y+  T  ++T+  
Sbjct: 686  TEREK----KTIFYKN--PREEIKTVGSDGLPIPGRRYFLDEVYYVTYNVETGDFKTHKF 739

Query: 814  KGSESVFVDYVAV--DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDI 871
              +E  +   V +    + S N  Q A I++R  RNPIIGDKF+SRHGQKG+ S LWP  
Sbjct: 740  HYAEPAYCGLVRIVEQGEGSSNGSQHALIQWRIERNPIIGDKFASRHGQKGINSFLWPVE 799

Query: 872  DMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNG 931
             +PFS  TGM PD+I NPH FPSRMTI M++ES+A K  + HG+  DA+PF         
Sbjct: 800  SLPFSE-TGMVPDIIFNPHGFPSRMTIGMMIESMAGKAAATHGENYDASPFV-------- 850

Query: 932  DTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSD 991
                +E  + ++  G++L   G+NY+G E  YSGV G ++  +IF G VYYQRLRHM++D
Sbjct: 851  ---FNEDNTAINHFGQLLTKAGYNYYGNETFYSGVDGRQMEMQIFFGIVYYQRLRHMIAD 907

Query: 992  KFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVAD 1051
            KFQVR+TG +D IT QP+KGRK+GGGIRFGEMERD+++AHG +++L DRL  CSD  VA 
Sbjct: 908  KFQVRATGPIDPITHQPVKGRKKGGGIRFGEMERDAIIAHGTSFVLQDRLLNCSDRDVAY 967

Query: 1052 VCSLCGSVLTATFIHPQKRAIR--EIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRY 1109
             C  CGS+L+    + Q   +R  +     P    +   C  C     +  + +P VFRY
Sbjct: 968  ACRRCGSLLSVLMSNKQSHIVRKKKTNDNEPIDYTETQQCRTCGREDQVYLLQVPRVFRY 1027

Query: 1110 LAAELAAMNIKITL 1123
            L AELAAMN+KI L
Sbjct: 1028 LTAELAAMNVKIKL 1041


>gi|397574467|gb|EJK49226.1| hypothetical protein THAOC_31929 [Thalassiosira oceanica]
          Length = 878

 Score =  707 bits (1824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/907 (43%), Positives = 535/907 (58%), Gaps = 107/907 (11%)

Query: 296  MLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNG 355
            ML+KL+S        DN DSLQNQEILLPGHL+  ++KEK ++ L   +K +  E+ N+ 
Sbjct: 1    MLRKLYSFAAGDCGVDNADSLQNQEILLPGHLLCTFVKEKFDECLESMRKGLLREMRNHS 60

Query: 356  KKFDFFNLANI-KKVMEKN--PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERL 412
            +  +    A    K++++    S  IG  +   L TG + + TGLDL Q +GYT+ AE+L
Sbjct: 61   QFLNNVGQAKWWSKIVDRYGISSGGIGAKVSHFLSTGNIISSTGLDLMQVSGYTIVAEKL 120

Query: 413  NFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRV 472
            NFLRF + FR+VHRG  F  ++TT+VRKLLP+ WGFLCPVHTPDG PCGLL+HM   C+ 
Sbjct: 121  NFLRFCAHFRSVHRGQFFMEMKTTAVRKLLPDQWGFLCPVHTPDGGPCGLLSHMALKCQC 180

Query: 473  ASYYDSR--GNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAV-----LSVLLDGRV 525
             ++   +  G++ D S++       L+G G+ P+                 L VL+DGRV
Sbjct: 181  MAFPAQKEGGDLEDLSEL-------LVGWGVRPTGTGGESGDGSGTSSHTDLPVLVDGRV 233

Query: 526  VGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL-GGAYPGLYLFTSPPKFVRP 584
            VG       + +   LR LKV+    +P  LEV ++P  + GG YPGL+LFT   + VRP
Sbjct: 234  VGGASVKLCKSIAFQLRELKVAEKPTVPQTLEVAFIPPGMKGGPYPGLFLFTVAARVVRP 293

Query: 585  VRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEEIHPTGMLSVVAN 643
            V         +   E IGP EQ FM+I C P+    G       TH+E+ P  MLS++A+
Sbjct: 294  VLQ-----RATGRTEYIGPMEQPFMDIACLPEDIREGI-----TTHQELDPANMLSLIAS 343

Query: 644  LTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGI 703
            LTP+SD+NQSPRNMYQCQM KQTMG    +L +R+D KLY +QTPQ P+V+T  + +Y +
Sbjct: 344  LTPFSDYNQSPRNMYQCQMGKQTMGTPGHSLPYRSDNKLYKIQTPQAPLVQTAVHGEYKM 403

Query: 704  DEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD--------- 754
            DEYP GTNA+VAVL+YTG+DMEDAMILNKSS +RG  H  +Y+T  +D+++         
Sbjct: 404  DEYPNGTNAVVAVLSYTGFDMEDAMILNKSSYERGFGHASVYKTVKVDIAEEMSMAVNKG 463

Query: 755  -DGNKVDRGQKLFR-----RNKDAK------SLHSVIDSDGLPYVGQMIHPGEPYCSIYD 802
             D +K+  G K  R      N+  K       ++  ++ DGLP VG  +  G P   + D
Sbjct: 464  ADKDKIKLGNKTKRVRVPPENEGDKPTVKYEKMYPNLEDDGLPPVGAWVKEGHPLYCLAD 523

Query: 803  KTTNSWRTNSRKGSESVFVDYV--------AVDMKNSKNLPQKA-NIRFRHTRNPIIGDK 853
               NS      K  E   V  +            + SK+  ++  ++  R  RNP+IGDK
Sbjct: 524  DGPNSGHVGKHKEKEKACVQNIRRLNMSGGQAGGRGSKDANKEGLSVTLRFPRNPVIGDK 583

Query: 854  FSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLII-------------------------N 888
            FSSRHGQKGV S LWP  DMPFS  +G+ PD+II                         +
Sbjct: 584  FSSRHGQKGVLSILWPQTDMPFS-ESGISPDVIISKLSLVALASLSKRSMSHFSRLFELD 642

Query: 889  PHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEM 948
            PHAFPSRMTI ML+ES+A K GS HG F DATPF       +GD      K  VD  GE 
Sbjct: 643  PHAFPSRMTIGMLIESMAGKSGSCHGMFQDATPF---TFHESGD------KIAVDYFGEQ 693

Query: 949  LRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQP 1008
            L+  G+NY+G E LYSGV G  +  +++IG VYYQRLRHMVSDK+QVR+TGT++ +TRQP
Sbjct: 694  LQAAGYNYYGSEPLYSGVSGCLMQADLYIGVVYYQRLRHMVSDKYQVRATGTVNPLTRQP 753

Query: 1009 IKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQ 1068
            IKGRK+GGGIR GEMERDSLL+HGAA+LLHDRL  CSD H+A  C  CG +L+ T    +
Sbjct: 754  IKGRKKGGGIRLGEMERDSLLSHGAAFLLHDRLLNCSDRHIAYACKRCGDLLSPT---TE 810

Query: 1069 KRAIREIG-GLPPARAPKKVTCHACQ---------TSKGMETVAMPYVFRYLAAELAAMN 1118
            + +I   G     +R   +V C   +             ++ + +PYV+RYL  ELAAMN
Sbjct: 811  RSSILSAGQKANDSRTQLRVYCRNAKCVNQVQNEANDDAVQPIILPYVYRYLTNELAAMN 870

Query: 1119 IKITLQL 1125
            IK+ + +
Sbjct: 871  IKLKMNI 877


>gi|189192000|ref|XP_001932339.1| DNA-directed RNA polymerase I polypeptide 2 [Pyrenophora
            tritici-repentis Pt-1C-BFP]
 gi|187973945|gb|EDU41444.1| DNA-directed RNA polymerase I polypeptide 2 [Pyrenophora
            tritici-repentis Pt-1C-BFP]
          Length = 1178

 Score =  703 bits (1814), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/1150 (38%), Positives = 625/1150 (54%), Gaps = 156/1150 (13%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
              R+   +Y GK+ A ++++ ++ G     E  + G  P+ML++ RCHL+G     LV  
Sbjct: 122  EARERHATYRGKMRARLQWR-INQGD-WQEEMADLGSVPIMLRSNRCHLEGLSPAALVKS 179

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
            KEE+ E GGYFI+NG E++ R + + ++NYPM++ R +F +R  GYT   + IR +R DQ
Sbjct: 180  KEESEECGGYFIVNGNEKMIRPLQVNRRNYPMAIKRGAFTNRGPGYTQYGIQIRSMRPDQ 239

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
            +S T  L+YL +G+V   F  +  EYL+P+ +++KALV+TND EIF  L      K  +E
Sbjct: 240  TSQTNALHYLDDGNVNFRFSWRKSEYLVPLVMIMKALVETNDREIFEGLVGAAGSKGLRE 299

Query: 217  KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
            K       VS+RV+++L   +   L T+ +    +G+ F+ V+      S +      +R
Sbjct: 300  K-----QFVSDRVELLLRTFKVYGLHTKAKTRAFLGQKFKVVLQLPPDISDFDGGTEFLR 354

Query: 277  DYIFVHLN-------DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
              +  HL         + DKF +L+FM +KL+SLV+     DNPD++Q+QEILL G L  
Sbjct: 355  KIVLPHLGCVAVTPAQDADKFRMLLFMTRKLYSLVEGECTVDNPDAVQSQEILLGGQLYG 414

Query: 330  IYLKEKLEDWLRKGKKLIQDEIENNGKKFDF-------FNLANIKKVMEKNPSKQIGTSI 382
            + LKE+LE+WL       Q  +   G+K ++       F      K++ +     IG ++
Sbjct: 415  MILKERLEEWLNS----FQLALREWGRKTEYKPIVSDDFRRDWTSKILRRT-KNNIGDAM 469

Query: 383  ETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLL 442
               L        +GLD+QQ +GYTV                       AGL  TSV    
Sbjct: 470  SYFL--------SGLDMQQTSGYTV----------------------VAGLFPTSV---- 495

Query: 443  PESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMI 502
               W    P      +P           R  ++Y S G          SI    + V  I
Sbjct: 496  ---WYTEVPSLLSSRQP-----------RSENFYPSLGG---------SIATSNVDVSAI 532

Query: 503  PSL-PKL-VKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDL 556
            P L  KL V     A L     V LDGRV+G     + + V   LR  KV  +  +P +L
Sbjct: 533  PKLVAKLGVSRDSSASLDESVVVQLDGRVLGFCSPKQAKVVSDTLRYWKVEGSHGVPLEL 592

Query: 557  EVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDG 616
            E+GYVP S  G YPG+Y+F+   +  RPV+ + L       ++ +GPFEQ +M I C D 
Sbjct: 593  EIGYVPNSNNGQYPGVYMFSQSARMYRPVKYLPL-----NKLDYVGPFEQPYMSISCTDA 647

Query: 617  ----GDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQ-CQMAKQTMGFSV 671
                GD        +TH E  PT +LS+V+N TP+SD+NQSPRN+Y+ CQM KQ+MG   
Sbjct: 648  EIVSGD--------STHVEFDPTNILSIVSNQTPFSDYNQSPRNLYRSCQMGKQSMGTPA 699

Query: 672  QALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILN 731
             +L +R D K Y LQT QTPI R   + KYG+D +P G NA+VAV++YTGYDM+D  +L+
Sbjct: 700  TSLDYRTDNKAYRLQTGQTPIARPPLHNKYGLDNFPNGMNAVVAVISYTGYDMDDGFVLS 759

Query: 732  KSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQ----KLFRRNKDA---KSLHSVIDSDGL 784
            + + +RG  HG +Y+T+ +DL ++G++ +R +    KLF    D+         +D+DGL
Sbjct: 760  RGAHERGFGHGTVYKTKILDL-EEGSRKNRSKRTVTKLFGFAPDSLVESKPKETLDADGL 818

Query: 785  PYVGQMIHPGEPYCSI----YDKTTNSWRTNS-------RKGSESVFVDYVAVDMKNSKN 833
            P VG M+  G+   +     YD   + +            K  E  +V+ V +       
Sbjct: 819  PRVGTMLRSGDVIAAWHTVSYDTAMDDYTNKDGQTQFFKYKEDEVAYVEQVRIIGSEDGT 878

Query: 834  LP-QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAF 892
             P QK +I+ R  R+PI+GDKFSSRHGQKGV SQ +   DMPFS  TG++PD+IINPHAF
Sbjct: 879  QPCQKLSIKLRIPRSPIVGDKFSSRHGQKGVVSQKFSVADMPFS-ETGIQPDVIINPHAF 937

Query: 893  PSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTC 952
            PSRMTI M +ES+A K G+LHG   DATPF             DE  + VD  G+ L   
Sbjct: 938  PSRMTIGMFIESLAGKSGALHGMAQDATPFQ-----------FDEQNTAVDHFGQQLMKA 986

Query: 953  GFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGR 1012
            G+NY+G E +YSG  G EL  +I+IG VYYQRLRHM++DKFQVR+TG ++  T QP+KGR
Sbjct: 987  GYNYYGNEPMYSGFTGEELHADIYIGVVYYQRLRHMINDKFQVRTTGPVNPTTGQPVKGR 1046

Query: 1013 KRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAI 1072
            K+GGGIR GEMERD+L+AHG A+LL DR+  CSDY  A +C  CGS L+ T    +    
Sbjct: 1047 KKGGGIRVGEMERDALIAHGTAFLLQDRMMNCSDYTKAAICRSCGSFLSTTPTVSEYSRK 1106

Query: 1073 REIGGLP-------PARAPKKVTCHA--CQTSKGME--------TVAMPYVFRYLAAELA 1115
            ++ GG          A+    VT  A     ++GM          VA+P V +YL  EL+
Sbjct: 1107 KDKGGKDITIRCRRCAKLADAVTSKADVWMDAQGMRYVGGDDVAVVAVPGVLKYLDVELS 1166

Query: 1116 AMNIKITLQL 1125
            +M I++   +
Sbjct: 1167 SMGIRMKFNV 1176


>gi|449666447|ref|XP_002161911.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like [Hydra
            magnipapillata]
          Length = 1044

 Score =  701 bits (1810), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/1163 (35%), Positives = 610/1163 (52%), Gaps = 192/1163 (16%)

Query: 10   EPLRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVV---- 65
            + L+E ++ HIESF+Y+L+ GL+E        +        A++       G+PVV    
Sbjct: 26   KALQEFIQPHIESFNYILENGLNEAVKLIIPQEFELPDGRRAEISILDCSIGTPVVDDNN 85

Query: 66   -------------RERF-------------------------NFGQFPVMLKTRRCHLQG 87
                         RER                          +  Q PVM+K++ C L  
Sbjct: 86   FTSKTQRVYPAECRERHCTYKAKLTVTLQWKINGVLQGSVTKSIAQVPVMVKSKNCSLAN 145

Query: 88   ADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAV 147
                +L+   EEA E GGYFI+NG+E++ R +++ ++NYP++MVR S++ R   +T+  V
Sbjct: 146  LTPAQLIEKHEEAEEWGGYFIVNGIEKILRMLVMQRRNYPLAMVRKSWKSRGPLFTEFGV 205

Query: 148  VIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTC 207
             IR ++KDQS     L+YL +GS  L F  Q +++ +P+ ++LKAL   +D  I+  L  
Sbjct: 206  SIRSIQKDQSGNINVLHYLTDGSFTLSFIHQKEQFFVPLALILKALTANSDQYIYKQLL- 264

Query: 208  CYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESY 267
                      G        + V  +L  + D +L ++   L+++G  F+  ++  +  S 
Sbjct: 265  ---------HGKEDDIFFKDVVVNMLRTLNDENLLSQNDVLKYMGMRFRIKVNLPEWTSD 315

Query: 268  YAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
              +A+ + +  + VHL    DKFNLLI+M QKLF+L +    +++PD+  N E+LL GH 
Sbjct: 316  EDIAKYMFQTCVLVHLEKITDKFNLLIYMTQKLFALANDKCAAESPDNPMNHEVLLGGHT 375

Query: 328  ITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLK 387
              + LK+                                               +E+ L 
Sbjct: 376  YLLVLKQ-----------------------------------------------MESFLA 388

Query: 388  TGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWG 447
            TG + +++GL L Q  G +V A++LNF+R++S FR +HRGA F  +RTT+VRKLLPE+WG
Sbjct: 389  TGNILSKSGLGLMQATGMSVVADKLNFMRYLSHFRCIHRGAFFTEMRTTTVRKLLPEAWG 448

Query: 448  FLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS-ILRVLIGVGMIPSLP 506
            FLCPVHTPDG PCGLLNH+ + C+V +           +K  TS ++++L+ +GM   L 
Sbjct: 449  FLCPVHTPDGAPCGLLNHLAAACKVEN-----------TKYPTSDLIKLLVKLGM--QLC 495

Query: 507  KLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS-L 565
             +         SVLLDG VVG + S   E+V   LR  K     ++P  +E+ ++P +  
Sbjct: 496  DMDLGLASDSYSVLLDGCVVGRLRSHISEEVCKKLRVFKALQKEMVPPTMEIIFIPRTKF 555

Query: 566  GGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAF 625
               Y G++LFT   + +RPVRN+      +  +E IG FEQV+M+I           +A 
Sbjct: 556  ASQYEGIFLFTDVARMIRPVRNLL-----TNTVEYIGSFEQVYMDIAVY----SDEIHAP 606

Query: 626  PATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHL 685
              TH E++   MLS +A LTPYSD NQSPRNMYQCQM KQTMG   QALK R+D K+Y +
Sbjct: 607  TTTHMELNDCAMLSELATLTPYSDFNQSPRNMYQCQMGKQTMGTPCQALKHRSDNKMYKI 666

Query: 686  QTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIY 745
            Q  Q      N +                        D+E+  I +     R        
Sbjct: 667  QVGQIMSFEKNFFRLL--------------------VDLEEKYIDSSGCAFR-------- 698

Query: 746  QTETIDLSDDGNKVDRGQKLFRRNKDAKSLHS-VIDSDGLPYVGQMIHPGEPYCSIYDKT 804
                                F  ++++ +  S ++  DGLP +G+ +  G+PY S Y   
Sbjct: 699  --------------------FGSDEESSTFKSGLLGKDGLPPIGRFMQHGDPYYSYYHII 738

Query: 805  TNSWRTNSRKGSESVFVDYVAV--DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKG 862
               ++T   K  E  ++D + +    K  + L  K +I+ R  RNPIIGDKF+SRHGQKG
Sbjct: 739  NGEYKTVKYKHMEPAYIDDIKILGSDKGDREL-LKVSIKLRIQRNPIIGDKFASRHGQKG 797

Query: 863  VCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPF 922
            + S  WP  +MPF+  +GM PD+I NPH FPSRMTI M++ES+A K  +LHG   D+TPF
Sbjct: 798  ILSVKWPAENMPFTE-SGMIPDIIFNPHGFPSRMTIGMMIESMAGKSAALHGITHDSTPF 856

Query: 923  ANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYY 982
              S           E +     +GE+L   G+NY+G E +YSG+ G E+  +IFIG VYY
Sbjct: 857  IFS-----------EEEPAAHYMGEILVKAGYNYYGNERMYSGINGKEMDVDIFIGIVYY 905

Query: 983  QRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLH 1042
            QRLRHMV+DK+QVRSTG +D +T QP++GRKR GGIRFGEMERD+L+AHG+ +LLHDRL 
Sbjct: 906  QRLRHMVADKYQVRSTGPVDNLTHQPVQGRKRQGGIRFGEMERDALIAHGSGFLLHDRLF 965

Query: 1043 TCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVA 1102
             CSD     VC+ CGS+ T     P       IG        +K  C  C     ++ + 
Sbjct: 966  NCSDRCETHVCTKCGSIFTPIVRKPVTHHDSLIG-----FNDRKWFCRVCGHGDDIQKML 1020

Query: 1103 MPYVFRYLAAELAAMNIKITLQL 1125
            +PYVF+YL AEL AMNI++ L +
Sbjct: 1021 VPYVFKYLIAELTAMNIRLVLDV 1043


>gi|67624195|ref|XP_668380.1| DNA-directed RNA polymerase I polypeptide 2 (RNA polymerase I subunit
            2) [Cryptosporidium hominis TU502]
 gi|54659575|gb|EAL38145.1| DNA-directed RNA polymerase I polypeptide 2 (RNA polymerase I subunit
            2) [Cryptosporidium hominis]
          Length = 1281

 Score =  701 bits (1809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/1222 (37%), Positives = 641/1222 (52%), Gaps = 143/1222 (11%)

Query: 23   FDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRR 82
            F Y    G      H R   ISY+  L  + E  Y  +   V +     G  P+M+K+  
Sbjct: 75   FGYSESSGTKLTPQHARNGHISYSAPLWLEFE-GYNSSLDTVSKHSIYAGTIPIMVKSSN 133

Query: 83   CHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGY 142
            CHL G  +++LV   E+  E+GGYFI+NG ERV R VI  + NYP+ + R  F       
Sbjct: 134  CHLFGLGTKELVEKGEDPNEVGGYFIINGNERVIRYVIQQRCNYPIGLKRPRFATFDSFG 193

Query: 143  TDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIF 202
            ++ AV++R +R D +S    LY   +        L  +E+L+P   +L A+    D  + 
Sbjct: 194  SEYAVLMRSLRDDGTSTANYLYGTSDHQCIYRVLLNRQEWLIPFWPLLMAVGSIYDSNVL 253

Query: 203  NHLTCCY----DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTR---------LQCLQ 249
                  Y    DE        +      +    + AE   +S   +          + L 
Sbjct: 254  RSKILQYCNPKDENLFNTINMLTLEWGLDNSVGVDAEFNSVSFGNKGPGDTDILENRYLH 313

Query: 250  HIGEH-FQPVIDGLQSESYYAVA-ETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHT 307
             IG   ++ V   L   S    A   +I +Y+ VHL + N K   LI M  KL  L  + 
Sbjct: 314  QIGRLVWEGVAFHLPPGSLLQEAGRFLIDNYVLVHLEEWNAKLECLILMFIKLIKLQLNE 373

Query: 308  SVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEI-----ENNGKKFDFFN 362
               ++ DS   QE+L PG+L +   K+ +  +L+K +     EI     E N +  +  N
Sbjct: 374  IREESIDSFAYQELLSPGNLYSALFKDAIFSFLQKIRSTYLIEIRSKSGEKNKESKNGAN 433

Query: 363  L----ANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFI 418
            L    A  K V+ KN S  I   ++  + TG + T T LDLQQ +G+TV A+RLNF RF+
Sbjct: 434  LLRDTAYFKSVLSKNIS-MIPKRLQYFMATGNVKT-TQLDLQQLSGWTVVADRLNFNRFL 491

Query: 419  SFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDS 478
            S FRAVHRG  F  ++TT VRKL  E+WGFLCPVHTPDGEPCGLL H++  C   + +DS
Sbjct: 492  SHFRAVHRGQFFTTMKTTDVRKLTGETWGFLCPVHTPDGEPCGLLLHLSQDCIPVTQWDS 551

Query: 479  RGNIRDFSKMRTSILRVLI----GVGMIPSL-------------PKLVKSGPPAVLSVLL 521
            +  +R   ++R  ++   I    G+G + S              P L KS P     V+L
Sbjct: 552  QETLR---RLRNYLISHGISCDDGLGSLSSTWGIESSSRDDLYSPDLTKSIP-----VML 603

Query: 522  DGRVVGVIPSSEIEKVVAHLRRLKV-SAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPK 580
            DGRV+  IP  +       LR LK  +  SV+P   E+  VP    G + G+Y+FT+P +
Sbjct: 604  DGRVLFHIPREDFMIWENKLRTLKWQTNPSVLPVHAEIACVPPD-SGMFSGIYIFTAPGR 662

Query: 581  FVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDG----------------------GD 618
             VRP+ ++     E+  ++ IGP  Q +M I   +                        +
Sbjct: 663  LVRPIMHL-----ETAQVDWIGPLGQPWMNIGVTEEETRKSTKLLEIQKRLIGISDTESE 717

Query: 619  GGRRNAFPA-------------------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQ 659
               +N   A                   TH E+HP+ +LSV A+L PY+ HNQSPRNMYQ
Sbjct: 718  EQLKNDLKALKKLIKDNDRVLSSVPVNYTHMELHPSTILSVTASLIPYAHHNQSPRNMYQ 777

Query: 660  CQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAY 719
            CQM KQTMG       +R D K+Y L TPQ P + T  Y+ +G  EYPTGTNAIVAV++Y
Sbjct: 778  CQMLKQTMGTPCLNYPYRTDNKMYRLLTPQEPTIITKGYSSFGFSEYPTGTNAIVAVMSY 837

Query: 720  TGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLS-DDGNKVDRGQKLFRRN--KDAKSLH 776
            +GYDMEDAMILNKSS DRGM H  +Y+T+ I  +     K    +  F  N   D + + 
Sbjct: 838  SGYDMEDAMILNKSSYDRGMFHACVYKTKIISAAPPSATKKSDAESYFFHNIGPDGELVV 897

Query: 777  SVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR----KGSESVFVDY-------VA 825
              + +DGLP +GQ +  G P C +    +    +N+        E  FV+        ++
Sbjct: 898  KELSADGLPNIGQRLTKGSPICRVERTGSGGGPSNATIQTYHDDEVAFVEKINRIASGIS 957

Query: 826  VDMKNS-------------KNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDID 872
            ++++                   +K +I+ R  RNP++GDKF+SRHGQKG+ S LWP  +
Sbjct: 958  IELQQDSLSGGGGDGASSSSGYGEKVSIKLRIVRNPMVGDKFASRHGQKGILSMLWPQEN 1017

Query: 873  MPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHG-KFMDATPF----ANSVK 927
            MPFS  +GM PD++ NPH FPSRMTI MLLES+  K   +HG + +DATPF    ++ + 
Sbjct: 1018 MPFSE-SGMVPDILFNPHGFPSRMTIGMLLESMGGKAACIHGARSLDATPFNINISDDLS 1076

Query: 928  KTNGDTGTDES--KSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRL 985
            ++  +   D++  K+ VD  G+ L   GF Y+G E LY+G+ G EL C IF+G +YYQRL
Sbjct: 1077 RSEENCEDDKAGEKTTVDYFGKALERAGFQYYGCEPLYNGMTGVELPCHIFMGVIYYQRL 1136

Query: 986  RHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCS 1045
            RHMV+DK QVR+TG +D +TRQP+KGRKR GGIRFGEMERDSL+++G + +L DRL  CS
Sbjct: 1137 RHMVADKAQVRATGPIDALTRQPVKGRKRHGGIRFGEMERDSLISYGVSSILVDRLLICS 1196

Query: 1046 DYHVADVCSLCGSVLTATFIHPQKRAI-REIGGLPPARA-PKKVTCHACQTSKGMETVAM 1103
            D H A VC  CG ++++      KRA+ + I     +   P    C  C++      + +
Sbjct: 1197 DEHRAYVCPKCGLIISSI----SKRAMAQSISSSKLSNCIPPIAVCRVCKSP--CRIITL 1250

Query: 1104 PYVFRYLAAELAAMNIKITLQL 1125
            PY+FRYL+ ELAAMNI I L L
Sbjct: 1251 PYIFRYLSNELAAMNIVIRLHL 1272


>gi|308800510|ref|XP_003075036.1| RNA polymerase III, second largest subunit (ISS) [Ostreococcus tauri]
 gi|116061590|emb|CAL52308.1| RNA polymerase III, second largest subunit (ISS) [Ostreococcus tauri]
          Length = 1128

 Score =  700 bits (1806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/1103 (39%), Positives = 628/1103 (56%), Gaps = 97/1103 (8%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERF-NFGQFPVMLKTRRCHLQGADSQKLVSL 96
            CR+   +Y  K    V + +   G+  ++ R    GQ PVM+++  C L      +LV+ 
Sbjct: 105  CREVGETY--KTSMSVSYCWRLQGNDAMQRRVVQLGQCPVMVQSNVCSLARLCPAELVAF 162

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
             EEA E GGYFI+NG+ER+ R +I+ ++++ + + R +F  R                 +
Sbjct: 163  GEEANEAGGYFIINGIERMIRMIIMQRRHHILGLRRRAFLKRSP-------------LSR 209

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
             S T++L+Y+ NGS+++ F  + +E+ +P G+VL++LV  +D E+  H   C +      
Sbjct: 210  HSSTIRLHYMRNGSLKVAFQHRREEFFIPAGLVLRSLVACSDAEL--HERACMELLGTSS 267

Query: 217  KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
                    V ER+ II  E Q L + T++  L ++G+HF+ +++   SES  AV E  +R
Sbjct: 268  HEET---FVKERLAIIQEECQSLYIFTQISALSYLGQHFRTLLEASASESDAAVGERFLR 324

Query: 277  DYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
            D IF+HL+ N DK +LL+ M+ KL +LV      D+PDSL NQE+LLPG L+   ++EK+
Sbjct: 325  DTIFIHLSRNGDKLSLLLLMMNKLLTLVTGGCGPDDPDSLVNQEVLLPGLLLQKIVREKI 384

Query: 337  EDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
            +   +K        +    +  D     +I +V+++  S  IG ++E +L TG L + TG
Sbjct: 385  QISFQK--------VLTQIRGLDCRINEDIGRVIDETASLDIGKALEYILATGNLVSPTG 436

Query: 397  LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
            L L Q +G+T+ AE+LN+ R++S FR+VHRGA F  LRTT+VRKLLPESWGFLCPVHTPD
Sbjct: 437  LGLSQASGFTIVAEKLNYFRYLSHFRSVHRGAYFMELRTTAVRKLLPESWGFLCPVHTPD 496

Query: 457  GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS--LPKLVKSGPP 514
            G PCGLLNH+T  C V    D    +R     R  +++  +   ++ +    +   S P 
Sbjct: 497  GSPCGLLNHLTEMCEVV-VPDKDPLVRS---ERLDLIKSKLAWALVDAEHRSRFHHSVP- 551

Query: 515  AVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL-SLGGAYPGLY 573
                V+++G  +G I  +++E+ VA LR  K + + +     E+ ++P+    G +PGLY
Sbjct: 552  ----VIVEGVHMGYISIADVERAVAALREAK-TGSQLSLQMTEICHIPVHGEHGLFPGLY 606

Query: 574  LFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIH 633
            +F  P + +RPV+ +      +  IEL+G  EQ F+ I C    +    + F  TH E+ 
Sbjct: 607  IFYGPSRLMRPVQQV-----HTGKIELVGTLEQSFLSI-CSLRKE--MNDIF--THSELK 656

Query: 634  PTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIV 693
             T  LS +A+LTP+SD NQSPRNMYQCQMAKQTMG  + ++ FR+D KLY L TPQ P+ 
Sbjct: 657  MTSALSCIASLTPWSDFNQSPRNMYQCQMAKQTMGTPMHSICFRSDTKLYRLHTPQRPVA 716

Query: 694  RTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLS 753
             T TY KY +D Y  GTNA+VAVLAYTGYDMEDAMILNK S+ RG  H  +Y+T    + 
Sbjct: 717  LTYTYDKYALDNYALGTNAVVAVLAYTGYDMEDAMILNKGSLTRGFAHATLYKT----IV 772

Query: 754  DDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR 813
            +  +K     ++   N      +  IDS G   VG +  PG    ++         T SR
Sbjct: 773  ETASK----HEVIGMNASQSRTNEHIDSFGTVDVGSVASPGS---TVLRVNNGEGLTKSR 825

Query: 814  ----KGSESVFVDYV---AVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQ 866
                KG++   VD V   +   K ++N+ ++A I FR+ RNP+IGDKFSSRHGQKGV S 
Sbjct: 826  QIRIKGTDPAVVDRVVLTSTTQKGNQNV-KRAAITFRYDRNPVIGDKFSSRHGQKGVLSF 884

Query: 867  LWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSV 926
            LWP+ DMPF   TG+RPD+IINPHAFPSRMTI ML+ES+A+K G++   F DATPF    
Sbjct: 885  LWPEEDMPFCERTGVRPDVIINPHAFPSRMTIGMLVESLASKAGAMAAVFADATPFKRDK 944

Query: 927  KKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLR 986
            K +          S  +  G +LR  G+N+ G E + +G  G   + +IFIG VYYQRLR
Sbjct: 945  KYS----------SPAERYGSLLREHGYNFCGNESMINGYTGESFSVDIFIGIVYYQRLR 994

Query: 987  HMVSDKFQVRSTGTMDQITR---QPIKGRKRGGGIRFGEMERD--SLLAHGAAYLLHDRL 1041
            HMV    +      +DQI R    P K      G   G+      SL+A    + L DRL
Sbjct: 995  HMVMISSKC---APLDQIIRLQSSPSKEENLVVGFDLGKWSATHFSLMAL-HTWCLRDRL 1050

Query: 1042 HTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETV 1101
            + CSD     VC +CGS+L      P    +    G     A ++  C  C+++  +E V
Sbjct: 1051 NMCSDNQDTWVCKVCGSLLA-----PLTMCMATSCG--EKYASQRTRCRVCESNTSVEIV 1103

Query: 1102 AMPYVFRYLAAELAAMNIKITLQ 1124
            ++P+VF YLA ELAAMNI I L+
Sbjct: 1104 SVPHVFIYLATELAAMNISIQLK 1126


>gi|357622980|gb|EHJ74315.1| hypothetical protein KGM_02320 [Danaus plexippus]
          Length = 1130

 Score =  699 bits (1803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/1161 (37%), Positives = 623/1161 (53%), Gaps = 133/1161 (11%)

Query: 19   HIESFDYMLDEGLSEMFD------------------------------------------ 36
            HI+SF+YM+ +GL    D                                          
Sbjct: 38   HIDSFNYMIKDGLKAAIDDLIPVEFDVPSGERIKITIDEAAFAKPSVPMEAVGVKNQIVL 97

Query: 37   --HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLV 94
               CRQ   +Y G     V   +   G  +  +R + G  P+MLK++ CHL     ++LV
Sbjct: 98   PTECRQRAATYKGDF--KVRLSFTVDGKTISMDR-SLGSLPIMLKSKVCHLADLSPEELV 154

Query: 95   SLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRK 154
               E A E GGYFI+ G ER+ R +++ ++NYP+++ RS +R R   +TD  V++RCV+ 
Sbjct: 155  KKNEHADEWGGYFIIKGHERLARMLLVTRRNYPVAIKRSGWRMRGNLFTDYGVLMRCVKP 214

Query: 155  DQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYK 214
            DQ+S    L++L NG+ +L F  +   Y  P+ ++LK LVD  D  I+  L         
Sbjct: 215  DQTSTNNVLHFLQNGTCKLMFSHRKVMYYAPLVLILKCLVDWPDHYIYRLLL-------- 266

Query: 215  KEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETV 274
               G          V+ +L E+ +  L T ++C  ++G  F+  +D     +    A  +
Sbjct: 267  --HGKKNDLYYVNCVQNMLRELHEQDLHTSVECRSYMGRMFRARLDLPPDATDLDAANFL 324

Query: 275  IRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKE 334
            +   I +HLND  DKF  L+FM QKLF LV +    +  D++  QE+ + GHL    LKE
Sbjct: 325  LVRCIMIHLNDYKDKFYGLVFMNQKLFDLVQNKCKVEGADAVMVQELQVGGHLYLQVLKE 384

Query: 335  KLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEK--NPSKQIGTSIETMLKTGRLA 392
            +L+  L   K        N  KK     L+   K +++    +  +   +ET L TG  A
Sbjct: 385  RLQTLLYVLKA-------NIIKKSKTSRLSLTSKELQQIIRSAGGLEQKMETFLATGN-A 436

Query: 393  TQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPV 452
                ++L Q  G T+ AE LN +R++S F+A+HRG+ F  +RTT  R+LLP++WGF+CPV
Sbjct: 437  PSNNVNLAQYKGLTIVAENLNRMRYMSHFKAIHRGSFFMEMRTTEARQLLPDAWGFVCPV 496

Query: 453  HTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP--SLPKLVK 510
            HTPDG PCGLLNH+T++ +V    D         K  +S+  VL   GM P  S+     
Sbjct: 497  HTPDGAPCGLLNHLTASAQVTQQPDP--------KQVSSLPAVLEKCGMDPISSVAHTPL 548

Query: 511  SGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL-SLGGAY 569
            +       V +DGR+VG        K V++LR LKV    V P   E+  VP   +   Y
Sbjct: 549  THDVYKYPVFIDGRLVGYFNEDTALKSVSYLRTLKVKGEDV-PISTEIVMVPKKQIPAQY 607

Query: 570  PGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATH 629
             G++LFTS  + +RPV N+S     +  +EL+G  EQ++++I          +     TH
Sbjct: 608  AGVFLFTSEARMMRPVINLS-----TGQLELVGTMEQLYLDIAVAQTEIIKGKT----TH 658

Query: 630  EEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQ 689
             E+  +  +S +A L P  D NQSPRNMYQCQM KQTMG  +      A+ KLY LQT  
Sbjct: 659  LELSKSAFMSNLAQLVPMPDCNQSPRNMYQCQMGKQTMGTPIHTWSTNAETKLYRLQTGA 718

Query: 690  TPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTET 749
            TP+ R   +    +D+YP+GTNAI+AV++YTGYDMEDAMI+NKSS +RG   G +Y++  
Sbjct: 719  TPLFRPVHHDNLSLDDYPSGTNAILAVISYTGYDMEDAMIINKSSYERGFAAGSVYKSNF 778

Query: 750  IDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWR 809
             +L    +        F R+     L + +D DGLP VG  I P +P+   YD  ++ + 
Sbjct: 779  AELKSSSS-------YFCRDPTRTDLAAYMDEDGLPAVGARIQPEDPFYCHYDSDSSKFV 831

Query: 810  TNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWP 869
                 G E V VD V +  + S   P+KA I  R  RNP +GDKF+SR GQKG+CSQ WP
Sbjct: 832  VTKYHGKEEVVVDSVRLCGEFSSKAPKKACIMVRVQRNPTVGDKFASRAGQKGICSQKWP 891

Query: 870  DIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGG------SLHGKFMDATPFA 923
              D+PF+  +G+ PD++ NPH FPSRMTIAM++E +A K        S+H    DATPF 
Sbjct: 892  AEDLPFTE-SGLIPDVLFNPHGFPSRMTIAMMIECMAGKAACACTDTSVH----DATPFR 946

Query: 924  NSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQ 983
                        +E  + ++  G +L   G+NY+G E +YSGV G E+  +IF G V+YQ
Sbjct: 947  -----------FNEQDTAINYFGRLLEAGGYNYYGTERIYSGVDGREMQADIFCGLVHYQ 995

Query: 984  RLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHT 1043
            RLRHMVSDK+QVR+TG +D +TRQP+KGR+RGGG+R GEMERD+LLAHGA +LL DRL  
Sbjct: 996  RLRHMVSDKWQVRTTGAVDALTRQPVKGRRRGGGVRLGEMERDALLAHGATFLLQDRLFH 1055

Query: 1044 CSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAM 1103
            CSD   A +CS CG++L               G +       K TC  C     +  +++
Sbjct: 1056 CSDKSEAIICSKCGTLL---------------GPISGNTEGSKDTCRLCGEG-NLLLISI 1099

Query: 1104 PYVFRYLAAELAAMNIKITLQ 1124
            PY+F++   +LA++NI I + 
Sbjct: 1100 PYIFKFFVTQLASVNINIKIN 1120


>gi|66362272|ref|XP_628100.1| RNA polymerase 1 beta subunit [Cryptosporidium parvum Iowa II]
 gi|46227419|gb|EAK88354.1| RNA polymerase 1 beta subunit [Cryptosporidium parvum Iowa II]
          Length = 1281

 Score =  699 bits (1803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/1210 (37%), Positives = 639/1210 (52%), Gaps = 147/1210 (12%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
            H R   ISY+  L  + E  Y  +   V +     G  P+M+K+  CHL G  +++LV  
Sbjct: 89   HARNGHISYSAPLWLEFE-GYNSSLDTVSKHSIYAGTIPIMVKSSSCHLFGLGTKELVEK 147

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
             E+  E+GGYFI+NG ERV R VI  + NYP+ + R  F       ++ AV++R +R D 
Sbjct: 148  GEDPNEVGGYFIINGNERVIRYVIQQRCNYPIGLKRPRFATFDSFGSEYAVLMRSLRDDG 207

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY----DEK 212
            +S    LY   +        L  +E+L+P   +L A+    D  +       Y    DE 
Sbjct: 208  TSTANYLYGTSDHQCIYRVLLNRQEWLIPFWPLLMAVGSIYDSNVLRSKILQYCNPKDEN 267

Query: 213  YKKEKGAVGSPLVSERVKIILAEVQDLSLTTR---------LQCLQHIGEH-FQPVIDGL 262
                   +      +    + AE   +S   +          + L  IG   ++ V   L
Sbjct: 268  LFNTINMLTLEWGLDNSVGVDAEFNSVSFGNKGPGDTDILENRYLHQIGRLVWEGVAFHL 327

Query: 263  QSESYYAVA-ETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEI 321
               S    A   +I +Y+ VHL + N K   LI M  KL  L  +    ++ DS   QE+
Sbjct: 328  PPGSLLQEAGRFLIDNYVLVHLEEWNAKLECLILMFIKLIKLQLNEIREESIDSFAYQEL 387

Query: 322  LLPGHLITIYLKEKLEDWLRKGKKLIQDEI-----ENNGKKFDFFNL----ANIKKVMEK 372
            L PG+L +   K+ +  +L+K +     EI     E N +  +  NL    A  K V+ K
Sbjct: 388  LSPGNLYSALFKDAIFSFLQKIRSTYLIEIRSKSGEKNKESKNGVNLLRDTAYFKSVLSK 447

Query: 373  NPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAG 432
            N S  I   ++  + TG + T T LDLQQ +G+TV A+RLNF RF+S FRAVHRG  F  
Sbjct: 448  NIS-MIPKRLQYFMATGNVKT-TQLDLQQLSGWTVVADRLNFNRFLSHFRAVHRGQFFTT 505

Query: 433  LRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSI 492
            ++TT VRKL  E+WGFLCPVHTPDGEPCGLL H++  C   + +DS+  +R   ++R  +
Sbjct: 506  MKTTDVRKLTGETWGFLCPVHTPDGEPCGLLLHLSQDCIPVTQWDSQETLR---RLRNYL 562

Query: 493  LRVLI----GVGMIPSL-------------PKLVKSGPPAVLSVLLDGRVVGVIPSSEIE 535
            +   I    G+G + S              P L KS P     V+LDGRV+  IP  +  
Sbjct: 563  ISHGISCDDGLGSLSSTWGIESSSRDDLYSPDLTKSIP-----VMLDGRVLFHIPREDFM 617

Query: 536  KVVAHLRRLKV-SAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEE 594
                 LR LK  +  SV+P   E+  VP    G + G+Y+FT+P + VRP+ ++     E
Sbjct: 618  VWENKLRTLKWQTNPSVLPVHAEIACVPPD-SGMFSGIYIFTAPGRLVRPIMHL-----E 671

Query: 595  SQNIELIGPFEQVFMEIRCPDG----------------------GDGGRRNAFPA----- 627
            +  ++ IGP  Q +M I   +                        +   +N   A     
Sbjct: 672  TAQVDWIGPLGQPWMNIGVTEEETRKSTKLLEIQKRLIGISDTESEEQLKNDLKALKKLI 731

Query: 628  --------------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQA 673
                          TH E+HP+ +LSV A+L PY+ HNQSPRNMYQCQM KQTMG     
Sbjct: 732  KDNDRVLSSVPVNYTHMELHPSTILSVTASLIPYAHHNQSPRNMYQCQMLKQTMGTPCLN 791

Query: 674  LKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKS 733
              +R D K+Y L TPQ P + T  Y+ +G  EYPTGTNAIVAV++Y+GYDMEDAMILNKS
Sbjct: 792  HPYRTDNKMYRLLTPQEPTIITKGYSSFGFSEYPTGTNAIVAVMSYSGYDMEDAMILNKS 851

Query: 734  SVDRGMCHGQIYQTETIDLSD-DGNKVDRGQKLFRRN--KDAKSLHSVIDSDGLPYVGQM 790
            S DRGM H  +Y+T+ I  +     K    +  F  N   D + +   + +DGLP +GQ 
Sbjct: 852  SYDRGMFHACVYKTKIISAAPPSATKKSDAESYFFHNIGPDGELVVKELSADGLPNIGQR 911

Query: 791  IHPGEPYCSIYDKTTNSWRTNSR----KGSESVFVDYV-------AVDMKNSKNLP---- 835
            +  G P C +    +    +N+        E  FV+ +       +++++          
Sbjct: 912  LTKGSPICRVERIGSGGGPSNATIQTYHDDEVAFVEKINRIASGISIELQQDSLSGGGGD 971

Query: 836  ---------QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLI 886
                     +K +I+ R  RNP++GDKF+SRHGQKG+ S LWP  +MPFS  +GM PD++
Sbjct: 972  GASSSSGYGEKVSIKLRIVRNPMVGDKFASRHGQKGILSMLWPQENMPFSE-SGMVPDIL 1030

Query: 887  INPHAFPSRMTIAMLLESVAAKGGSLHG-KFMDATPF----ANSVKKTNGDTGTDES--K 939
             NPH FPSRMTI MLLES+  K   +HG + +DATPF    ++ + ++  +   D++  K
Sbjct: 1031 FNPHGFPSRMTIGMLLESMGGKAACIHGARSLDATPFNINISDDLSRSEENCEDDKAGEK 1090

Query: 940  SLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTG 999
            + VD  G+ L   GF Y+G E LY+G+ G EL C IF+G +YYQRLRHMV+DK QVR+TG
Sbjct: 1091 TTVDYFGKALERAGFQYYGCEPLYNGMTGVELPCHIFMGVIYYQRLRHMVADKAQVRATG 1150

Query: 1000 TMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSV 1059
             +D +TRQP+KGRKR GGIRFGEMERDSL+++G + +L DRL  CSD H A VC  CG +
Sbjct: 1151 PIDALTRQPVKGRKRHGGIRFGEMERDSLISYGVSSILVDRLLICSDEHRAYVCPKCGLI 1210

Query: 1060 LTATFIHPQKRAIREIGGLPPAR----APKKVTCHACQTSKGMETVAMPYVFRYLAAELA 1115
            +++      KRA+ +   +  ++     P    C  C++      + +PY+FRYL+ ELA
Sbjct: 1211 ISSI----SKRAMAQ--SMSSSKLSNCIPPIAVCRVCKSP--CRIITLPYIFRYLSNELA 1262

Query: 1116 AMNIKITLQL 1125
            AMNI I L L
Sbjct: 1263 AMNIVIRLHL 1272


>gi|195997459|ref|XP_002108598.1| hypothetical protein TRIADDRAFT_51662 [Trichoplax adhaerens]
 gi|190589374|gb|EDV29396.1| hypothetical protein TRIADDRAFT_51662 [Trichoplax adhaerens]
          Length = 780

 Score =  696 bits (1796), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/855 (44%), Positives = 516/855 (60%), Gaps = 88/855 (10%)

Query: 275  IRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKE 334
            +R+ I VHL+ N DKFNLLI+M++KL+++ +     ++ DS  NQEILL GH+ ++ LKE
Sbjct: 9    LRNCIAVHLDRNEDKFNLLIYMIRKLYAVANGECQIESQDSPMNQEILLGGHMYSMVLKE 68

Query: 335  KLEDWLRKGKKLIQDEI-ENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLAT 393
            KLE WL + K LI   + + N +K +         V   N    I   +E  L TG L  
Sbjct: 69   KLELWLSRVKNLILKYMAKTNDEKLEN------AIVRAANNGTNIPNQLEYFLATGNLVA 122

Query: 394  QTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVH 453
            +  L L Q AGY + A+RLNF+RF+S FR+VHRG+ F  +RTT+VRKLLPE+WGFLCPVH
Sbjct: 123  RADLGLMQVAGYVLVADRLNFMRFVSHFRSVHRGSFFTEMRTTAVRKLLPEAWGFLCPVH 182

Query: 454  TPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGP 513
            TPDG PCGLLNH+ ++C+V +       + D +K+ ++    L  +GM+     L++   
Sbjct: 183  TPDGAPCGLLNHLAASCKVVT------KMSDTTKLVST----LYELGMLSLSDPLIEYSS 232

Query: 514  PAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLY 573
              V  V+LDG++VG I     +++   LR LK++   ++    E+  V   + G Y GLY
Sbjct: 233  AHV--VILDGKIVGYIQKEIGKEIADKLRYLKINNMDMVDPSTEIALVHDGISGLYNGLY 290

Query: 574  LFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIH 633
            LFTSP + +RPV N+ L     Q  E+IG FEQVFM+I C    +     A   TH+E+ 
Sbjct: 291  LFTSPARMIRPVTNLRL-----QKQEMIGTFEQVFMDI-CITAEEA---YAEVTTHQELS 341

Query: 634  PTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIV 693
            P  MLS +A LTP+SD NQSPRNMYQCQM KQTMG  +Q+ K+R+D KLY +Q       
Sbjct: 342  PCSMLSALARLTPFSDFNQSPRNMYQCQMGKQTMGTPIQSFKYRSDNKLYRIQ------- 394

Query: 694  RTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLS 753
                                       GYDMEDAMILNKSSV+RG  H  IY++E I+L+
Sbjct: 395  ---------------------------GYDMEDAMILNKSSVERGFAHATIYKSEVINLN 427

Query: 754  DDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR 813
               +K   G ++F +        + ID DGLP +G +++ G+PY    + +T+    +  
Sbjct: 428  ---SKTADGLEIFGQTPGTTDSDN-IDLDGLPKIGSILNSGDPYYCTLNLSTSQCVVHYY 483

Query: 814  KGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDID 872
            +G E   VD V +   +S   P Q+  ++FR  RNPIIGDKFSSRHGQKGVCSQLWP  +
Sbjct: 484  RGQEQGIVDDVKLLGSDSGRKPLQRICVKFRIERNPIIGDKFSSRHGQKGVCSQLWPIEN 543

Query: 873  MPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGD 932
            MPF+  +GM PD++ NPH FPSRMTI M++ES+A K  SLHG   DATPF  S       
Sbjct: 544  MPFTE-SGMTPDILFNPHGFPSRMTIGMMIESMAGKSASLHGLCHDATPFQFS------- 595

Query: 933  TGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDK 992
                E  S VD  G+ L   G+NY G E +Y G+ G E    IFIG VYYQRLRHM+SDK
Sbjct: 596  ----EKVSAVDYFGKYLEKAGYNYFGTERMYDGMSGEEFEANIFIGTVYYQRLRHMISDK 651

Query: 993  FQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADV 1052
            FQVR+TG +D +TRQP++GRKR GG+RFGEMERD+L++HG ++LL DRL  CSD  VA V
Sbjct: 652  FQVRTTGPIDSLTRQPVQGRKRAGGVRFGEMERDALISHGTSFLLQDRLLNCSDKSVAHV 711

Query: 1053 CSLCGSVLTATFIHPQKRA--IREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYL 1110
            C  CGSVL  T    +  A   RE        + K   C  C +++ +  + +PYV+ YL
Sbjct: 712  CKKCGSVLGITTDVNKNEADIFREF-------SRKVYRCTTCDSTQEVTKMYLPYVYLYL 764

Query: 1111 AAELAAMNIKITLQL 1125
              E AA+NIK  +++
Sbjct: 765  VTEFAALNIKAVIEV 779


>gi|256077165|ref|XP_002574878.1| DNA-directed RNA polymerase I subunit [Schistosoma mansoni]
 gi|353230762|emb|CCD77179.1| putative dna-directed RNA polymerase I subunit [Schistosoma mansoni]
          Length = 1155

 Score =  692 bits (1786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/1200 (36%), Positives = 629/1200 (52%), Gaps = 131/1200 (10%)

Query: 12   LRELVRHHIESFDYMLDEGLSEMFDH---------------------------------- 37
            + +L R H  SFD+ + EGLS +  H                                  
Sbjct: 1    MEKLSRVHTGSFDFFVKEGLSRLVKHLQPLEFNSGSDVVEFKIQFIEVAPPVDSDNRSTL 60

Query: 38   -----CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQK 92
                 CR++ ++Y G+L   V       GSP+       G  P+M+ +R C+L      +
Sbjct: 61   LYPSECRRSGLTYGGELKLSVRVSV--NGSPLGVLDVPCGVLPIMVMSRACNLSSLPRSQ 118

Query: 93   LVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCV 152
                 EE  E+GGYFI++G ERV R +I+ ++NYP+++ RS+F+ R  GYT+ A+V+RCV
Sbjct: 119  FYLHGEEFKEIGGYFIVHGKERVLRLLIMSRRNYPLAISRSTFKKRGHGYTEHAIVMRCV 178

Query: 153  RKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEK 212
            R+D++   L L++L+NG   L F ++ +++L+P+ I+L+    +      N  TC     
Sbjct: 179  REDETVSILMLHWLVNGEPALAFIVEREQFLVPISIILRVSFKSLYKTFGNVRTCNISFL 238

Query: 213  YKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAE 272
            + K                IL  ++D   +++ + L ++G  F+  ++     S     +
Sbjct: 239  FLK--------FHIRNAMRILIRLKDDEYSSQTRALCYLGGLFRKRMNVPDRLSDEEAGK 290

Query: 273  TVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYL 332
             ++ +YI +HL+   DK++LL FM++KL + V      ++ D+   QE+LLP  L    L
Sbjct: 291  FLLSEYIAIHLSSFLDKYHLLCFMIKKLHAFVSGLCCEESNDNPMFQEVLLPSTLYLQVL 350

Query: 333  KEKLEDWLRKGKK--LIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGR 390
            + K+   L   K+  L++   +N       F+ A + +  E      + T++  M+ TG 
Sbjct: 351  RAKVLHLLANVKEQVLLKSRKQNVRISLSLFHQALLSRASE------VSTAMVYMVSTGN 404

Query: 391  L--ATQTGLDLQ---QRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
            L  + ++ L  Q   Q  G +V A+ +NFLRF + FRAVHRGA F  +RTTSVR+LLPE+
Sbjct: 405  LPPSCKSTLSAQLSGQSTGLSVPADNVNFLRFAAQFRAVHRGAFFTEMRTTSVRRLLPEA 464

Query: 446  WGFLCPVHTPDGEPCGLLNHMT----STCRV--ASYYDSRGNIRDFSKMR-TSILRVLIG 498
            WGF CPVHTPDG PCGLLNH+     + C     S  ++ GN     K+R   + R L G
Sbjct: 465  WGFFCPVHTPDGAPCGLLNHLAEPVEAVCETPKQSVLENIGNWLSTHKLRPIELSRQLFG 524

Query: 499  VGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPS-SEIEKVVAHLRRLKVSA-ASVIPDDL 556
            V           +     L VLLDGR++G + +  E +++   LR  KV      IP  +
Sbjct: 525  V-----------AEQQNALPVLLDGRLIGWLSTLDEAKRLALELRNSKVDPNCKNIPHTM 573

Query: 557  EVGYVPLS-LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN--IELIGPFEQVFMEIRC 613
            E+  VP + +G  YPGLYLF    + +RPV+N+  P   +    IE IG FEQV++ I  
Sbjct: 574  EITLVPSTDVGSQYPGLYLFAGGSRLLRPVKNLQCPKNSAGKDVIEWIGTFEQVYLNISV 633

Query: 614  PDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQA 673
             +  +   R+    +H EI P  + S VA L PY D NQSPRNMYQCQMAKQTMG S   
Sbjct: 634  KEE-ELSERSPIDRSHIEIAPENIFSFVAGLIPYPDFNQSPRNMYQCQMAKQTMGHSCYT 692

Query: 674  LKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKS 733
             + R+D K Y L TPQ+P+VRT  Y KY +D YP G NAIVAV++YTGYDMEDAM++NK+
Sbjct: 693  WRNRSDAKAYRLFTPQSPLVRTKMYVKYDVDHYPLGFNAIVAVMSYTGYDMEDAMVINKA 752

Query: 734  SVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSV-------IDSDGLPY 786
            S DRG+    IY++E IDLS            F++ +   S +         +D DG P 
Sbjct: 753  SYDRGLAGACIYKSEVIDLSSLSKSTSSNNP-FQKKRLVTSEYYFGEKPDKGLDLDGFPP 811

Query: 787  VGQMIHPGEPYCSIYDKTTNSWRTNSRK---GSESVFVDYVAVDMKNSKNLPQKANIRFR 843
            VG  + PG  +   Y   + + +TN  K   G +  +VD ++++   S      A I  R
Sbjct: 812  VGARLEPGVSWLYAYTH-SETLQTNFIKYEGGEQIAYVDSISLNGSWS-----CATITLR 865

Query: 844  HTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLE 903
              R P IGDK+SSRHGQKG+ S L    +MP+S   G+ PDLI NPH FP+RMT+ M++E
Sbjct: 866  LPRQPDIGDKYSSRHGQKGINSLLIQCEEMPWSTTNGLIPDLIFNPHGFPTRMTMGMMIE 925

Query: 904  SVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLY 963
             +A K  +L G  +DATPF  S           E     ++  ++L  CGFN+ G E + 
Sbjct: 926  FLAGKSAALTGNLIDATPFQWS-----------EDSPPYEDYCQILTDCGFNHWGTETMM 974

Query: 964  SGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEM 1023
            SG  G +L  +I++G VYYQRLRHMV+DK+QVR+ G  D I RQPIKGRK GGGIR GEM
Sbjct: 975  SGSTGRQLEAQIYVGVVYYQRLRHMVADKYQVRAEGRFDPILRQPIKGRKVGGGIRLGEM 1034

Query: 1024 ERDSLLAHGAAYLLHDRL--HTCSDYHVADVCSLCG----SVLTATFIHPQKRAIREIGG 1077
            ERD LL+HG  + L DRL    C    +   CS CG    S L     +     I     
Sbjct: 1035 ERDCLLSHGLVFSLQDRLVDSNCDKVKML-ACSKCGGLTHSDLARNITNTSVNQITSNNS 1093

Query: 1078 LPPARAPKKVTCHACQT----------SKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
                    +  C  C +             ++ V +   FRYL  ELA +N+K  L L D
Sbjct: 1094 SSFVPGTNRWCCRLCDSDSSDCVSRDRDNSLKYVKVSASFRYLTYELACLNVKTRLSLID 1153


>gi|19173004|ref|NP_597555.1| DNA-DIRECTED RNA POLYMERASE I, SECOND LARGEST SUBUNIT
            [Encephalitozoon cuniculi GB-M1]
          Length = 1062

 Score =  691 bits (1782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/1105 (38%), Positives = 605/1105 (54%), Gaps = 140/1105 (12%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR+  ++Y GK++  V          VV E  + G FP+M+++  CHL G  ++  V   
Sbjct: 81   CRERGLTYKGKMVVRVSL--FHDNKHVVTEDKSAGHFPIMVRSTLCHLNGIKNKNEVG-- 136

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            E+  E+GGYFI+NG++R  R  I+ K+N+  +      R +   ++D  V +RCV +D+ 
Sbjct: 137  EDEDEIGGYFIINGIDRFIRFNIMQKRNHIFAF---KMRKKTSFFSDYMVSMRCVGRDEI 193

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
                 L+Y  +G+V +  + +  E+L P+ +VLKALV+T D E+F               
Sbjct: 194  GHMNFLHYCTDGNVVIKIFHKKYEFLFPLVLVLKALVNTTDEELF--------------- 238

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
            GA+G     +R   +L    + ++ +R +CL +IG  F  +   L  ES   VAE ++  
Sbjct: 239  GALGG---GQRAVHLLKCFAEHNVFSRTECLDYIGSRFSAI---LNFESKAEVAEEILSK 292

Query: 278  YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
            Y+  HL+ N DKFN LI   +KLFS VD+    D+PDS  N E+     +I+ +L++++E
Sbjct: 293  YVVSHLSSNLDKFNFLILAARKLFSFVDNEITEDDPDSPSNHELGTETQIISSFLRDRIE 352

Query: 338  DWLR---------------KGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSI 382
            +++R               + +KL  D +  +G   D  +++ I+++  K  S  IG  +
Sbjct: 353  EFMRFFSMMCRKTYYKLEGEKRKLEGDSVTESGFCEDELDISKIREIF-KRTSINIGQRM 411

Query: 383  ETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLL 442
            E  L +G +   +  D+ Q  G+++ AER+NF +++S FR V+RG     +  TS+RKL 
Sbjct: 412  ELFLSSGSITLTSCSDILQTLGFSITAERINFYKYLSHFRGVNRGTHIPSM-VTSIRKLR 470

Query: 443  PESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMI 502
            PESWGFLCPVHTPDG PCG+L HM     V S  D      DF+        +L   G++
Sbjct: 471  PESWGFLCPVHTPDGAPCGVLLHMAKEAEVVSRDD------DFNT------DILFEFGVV 518

Query: 503  PSLPKLVKSGPPAVLSVLLDGRVVGVIPS-SEIEKVVAHLRRLKVSAASVIPDDLEVGYV 561
            PS+ + V+ G P    VL++GRVVG   S S++ ++V   R           + L +  V
Sbjct: 519  PSI-RGVEMGIP----VLVNGRVVGSTSSPSDLTRMVREYRN---------RNGLMIEVV 564

Query: 562  PLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDG-GDGG 620
              S    +P + +F+S  +F R V N  L SEE      IG  EQVF+ I   +G GDG 
Sbjct: 565  YTSEPKMFPSVCIFSSVGRFARKVMNRRLGSEE-----WIGIMEQVFLNIDTEEGAGDG- 618

Query: 621  RRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQ 680
                    + EI  +G+L ++A L PYSDHNQSPRNMYQCQMAKQ +G     ++ R D 
Sbjct: 619  -------DYYEIDKSGILGIIAGLIPYSDHNQSPRNMYQCQMAKQAIGHPAHNIRTRTDP 671

Query: 681  KLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMC 740
             +Y +   Q+PIVRT  Y    + +YP G N +VAVL+YT YDMEDA+++NK+S+DRG+ 
Sbjct: 672  TMYTVNYLQSPIVRTEGYEM--VKDYPVGINCMVAVLSYTAYDMEDALVINKNSIDRGLF 729

Query: 741  HGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSI 800
             G +Y+TE + L D G        + +R +   +L+  +D DG  Y  + +         
Sbjct: 730  TGYVYKTEKVPL-DKGYFFTYLPSVGQRIQKDDTLYRYVDQDGREYEKRYL--------- 779

Query: 801  YDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQ 860
                          G+E   VD V V  +N     + A    R  R+P+IGDKFSSRHGQ
Sbjct: 780  --------------GTEPGIVDIVRV-FENDMG-ERCATFTIRIVRSPMIGDKFSSRHGQ 823

Query: 861  KGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDAT 920
            KGVCS  WP IDMPF+  +G  PD+IINPHAFPSRMTI ML+ES+A K G L G   D T
Sbjct: 824  KGVCSMHWPGIDMPFTE-SGCVPDIIINPHAFPSRMTIGMLIESIAGKVGCLSGNEQDGT 882

Query: 921  PFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPV 980
             F  S      + G DE     + L   LR  GFNY+G E +YSGV G E   +IF+G V
Sbjct: 883  VFKKSFL-LEQEEGDDEKVRRKEYLCSELRRHGFNYYGNEPMYSGVAGNEFRADIFVGVV 941

Query: 981  YYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDR 1040
            YYQRL+HMV DKFQVR+ G +   TRQP+ GRK+ GGIRFGEMERD+L++HGA+YLL DR
Sbjct: 942  YYQRLKHMVGDKFQVRTKGAVVSTTRQPVGGRKKRGGIRFGEMERDALISHGASYLLQDR 1001

Query: 1041 LHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMET 1100
            L   SD  V + C  C S+L                            C  C +S  ++ 
Sbjct: 1002 LLKSSDSTVFEYCGTCRSILFTN----------------------NGDC-ICGSSD-LKA 1037

Query: 1101 VAMPYVFRYLAAELAAMNIKITLQL 1125
            V MPYVF+YL  EL AMNIK+ + L
Sbjct: 1038 VEMPYVFKYLCCELLAMNIKVQIDL 1062


>gi|392512568|emb|CAD26190.2| DNA-DIRECTED RNA POLYMERASE I, SECOND LARGEST SUBUNIT
            [Encephalitozoon cuniculi GB-M1]
          Length = 1050

 Score =  690 bits (1781), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/1105 (38%), Positives = 605/1105 (54%), Gaps = 140/1105 (12%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR+  ++Y GK++  V          VV E  + G FP+M+++  CHL G  ++  V   
Sbjct: 69   CRERGLTYKGKMVVRVSL--FHDNKHVVTEDKSAGHFPIMVRSTLCHLNGIKNKNEVG-- 124

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            E+  E+GGYFI+NG++R  R  I+ K+N+  +      R +   ++D  V +RCV +D+ 
Sbjct: 125  EDEDEIGGYFIINGIDRFIRFNIMQKRNHIFAF---KMRKKTSFFSDYMVSMRCVGRDEI 181

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
                 L+Y  +G+V +  + +  E+L P+ +VLKALV+T D E+F               
Sbjct: 182  GHMNFLHYCTDGNVVIKIFHKKYEFLFPLVLVLKALVNTTDEELF--------------- 226

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
            GA+G     +R   +L    + ++ +R +CL +IG  F  +   L  ES   VAE ++  
Sbjct: 227  GALGG---GQRAVHLLKCFAEHNVFSRTECLDYIGSRFSAI---LNFESKAEVAEEILSK 280

Query: 278  YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
            Y+  HL+ N DKFN LI   +KLFS VD+    D+PDS  N E+     +I+ +L++++E
Sbjct: 281  YVVSHLSSNLDKFNFLILAARKLFSFVDNEITEDDPDSPSNHELGTETQIISSFLRDRIE 340

Query: 338  DWLR---------------KGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSI 382
            +++R               + +KL  D +  +G   D  +++ I+++  K  S  IG  +
Sbjct: 341  EFMRFFSMMCRKTYYKLEGEKRKLEGDSVTESGFCEDELDISKIREIF-KRTSINIGQRM 399

Query: 383  ETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLL 442
            E  L +G +   +  D+ Q  G+++ AER+NF +++S FR V+RG     +  TS+RKL 
Sbjct: 400  ELFLSSGSITLTSCSDILQTLGFSITAERINFYKYLSHFRGVNRGTHIPSM-VTSIRKLR 458

Query: 443  PESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMI 502
            PESWGFLCPVHTPDG PCG+L HM     V S  D      DF+        +L   G++
Sbjct: 459  PESWGFLCPVHTPDGAPCGVLLHMAKEAEVVSRDD------DFNT------DILFEFGVV 506

Query: 503  PSLPKLVKSGPPAVLSVLLDGRVVGVIPS-SEIEKVVAHLRRLKVSAASVIPDDLEVGYV 561
            PS+ + V+ G P    VL++GRVVG   S S++ ++V   R           + L +  V
Sbjct: 507  PSI-RGVEMGIP----VLVNGRVVGSTSSPSDLTRMVREYRN---------RNGLMIEVV 552

Query: 562  PLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDG-GDGG 620
              S    +P + +F+S  +F R V N  L SEE      IG  EQVF+ I   +G GDG 
Sbjct: 553  YTSEPKMFPSVCIFSSVGRFARKVMNRRLGSEE-----WIGIMEQVFLNIDTEEGAGDG- 606

Query: 621  RRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQ 680
                    + EI  +G+L ++A L PYSDHNQSPRNMYQCQMAKQ +G     ++ R D 
Sbjct: 607  -------DYYEIDKSGILGIIAGLIPYSDHNQSPRNMYQCQMAKQAIGHPAHNIRTRTDP 659

Query: 681  KLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMC 740
             +Y +   Q+PIVRT  Y    + +YP G N +VAVL+YT YDMEDA+++NK+S+DRG+ 
Sbjct: 660  TMYTVNYLQSPIVRTEGYEM--VKDYPVGINCMVAVLSYTAYDMEDALVINKNSIDRGLF 717

Query: 741  HGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSI 800
             G +Y+TE + L D G        + +R +   +L+  +D DG  Y  + +         
Sbjct: 718  TGYVYKTEKVPL-DKGYFFTYLPSVGQRIQKDDTLYRYVDQDGREYEKRYL--------- 767

Query: 801  YDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQ 860
                          G+E   VD V V  +N     + A    R  R+P+IGDKFSSRHGQ
Sbjct: 768  --------------GTEPGIVDIVRV-FENDMG-ERCATFTIRIVRSPMIGDKFSSRHGQ 811

Query: 861  KGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDAT 920
            KGVCS  WP IDMPF+  +G  PD+IINPHAFPSRMTI ML+ES+A K G L G   D T
Sbjct: 812  KGVCSMHWPGIDMPFTE-SGCVPDIIINPHAFPSRMTIGMLIESIAGKVGCLSGNEQDGT 870

Query: 921  PFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPV 980
             F  S      + G DE     + L   LR  GFNY+G E +YSGV G E   +IF+G V
Sbjct: 871  VFKKSFL-LEQEEGDDEKVRRKEYLCSELRRHGFNYYGNEPMYSGVAGNEFRADIFVGVV 929

Query: 981  YYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDR 1040
            YYQRL+HMV DKFQVR+ G +   TRQP+ GRK+ GGIRFGEMERD+L++HGA+YLL DR
Sbjct: 930  YYQRLKHMVGDKFQVRTKGAVVSTTRQPVGGRKKRGGIRFGEMERDALISHGASYLLQDR 989

Query: 1041 LHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMET 1100
            L   SD  V + C  C S+L                            C  C +S  ++ 
Sbjct: 990  LLKSSDSTVFEYCGTCRSILFTN----------------------NGDC-ICGSSD-LKA 1025

Query: 1101 VAMPYVFRYLAAELAAMNIKITLQL 1125
            V MPYVF+YL  EL AMNIK+ + L
Sbjct: 1026 VEMPYVFKYLCCELLAMNIKVQIDL 1050


>gi|449329645|gb|AGE95915.1| DNA-directed RNA polymerase I second largest subunit [Encephalitozoon
            cuniculi]
          Length = 1062

 Score =  690 bits (1781), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/1105 (38%), Positives = 605/1105 (54%), Gaps = 140/1105 (12%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR+  ++Y GK++  V          VV E  + G FP+M+++  CHL G  ++  V   
Sbjct: 81   CRERGLTYKGKMVVRVSL--FHDNKHVVTEDKSAGHFPIMVRSTLCHLNGIKNKNEVG-- 136

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            E+  E+GGYFI+NG++R  R  I+ K+N+  +      R +   ++D  V +RCV +D+ 
Sbjct: 137  EDEDEIGGYFIINGIDRFVRFNIMQKRNHIFAF---KMRKKTSFFSDYMVSMRCVGRDEI 193

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
                 L+Y  +G+V +  + +  E+L P+ +VLKALV+T D E+F               
Sbjct: 194  GHMNFLHYCTDGNVVIKIFHKKYEFLFPLVLVLKALVNTTDEELF--------------- 238

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
            GA+G     +R   +L    + ++ +R +CL +IG  F  +   L  ES   VAE ++  
Sbjct: 239  GALGG---GQRAVHLLKCFAEHNVFSRTECLDYIGSRFSAI---LNFESKAEVAEEILSK 292

Query: 278  YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
            Y+  HL+ N DKFN LI   +KLFS VD+    D+PDS  N E+     +I+ +L++++E
Sbjct: 293  YVVSHLSSNLDKFNFLILAARKLFSFVDNEITEDDPDSPSNHELGTETQIISSFLRDRIE 352

Query: 338  DWLR---------------KGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSI 382
            +++R               + +KL  D +  +G   D  +++ I+++  K  S  IG  +
Sbjct: 353  EFMRFFSMMCRKTYYKLEGEKRKLEGDSVTESGFCEDELDISKIREIF-KRTSINIGQRM 411

Query: 383  ETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLL 442
            E  L +G +   +  D+ Q  G+++ AER+NF +++S FR V+RG     +  TS+RKL 
Sbjct: 412  ELFLSSGSITLTSCSDILQTLGFSITAERINFYKYLSHFRGVNRGTHIPSM-VTSIRKLR 470

Query: 443  PESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMI 502
            PESWGFLCPVHTPDG PCG+L HM     V S  D      DF+        +L   G++
Sbjct: 471  PESWGFLCPVHTPDGAPCGVLLHMAKEAEVVSRDD------DFNT------DILFEFGVV 518

Query: 503  PSLPKLVKSGPPAVLSVLLDGRVVGVIPS-SEIEKVVAHLRRLKVSAASVIPDDLEVGYV 561
            PS+ + V+ G P    VL++GRVVG   S S++ ++V   R           + L +  V
Sbjct: 519  PSI-RGVEMGIP----VLVNGRVVGSTSSPSDLTRMVREYRN---------RNGLMIEVV 564

Query: 562  PLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDG-GDGG 620
              S    +P + +F+S  +F R V N  L SEE      IG  EQVF+ I   +G GDG 
Sbjct: 565  YTSEPKMFPSVCIFSSVGRFARKVMNRRLGSEE-----WIGIMEQVFLNIDTEEGAGDG- 618

Query: 621  RRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQ 680
                    + EI  +G+L ++A L PYSDHNQSPRNMYQCQMAKQ +G     ++ R D 
Sbjct: 619  -------DYYEIDKSGILGIIAGLIPYSDHNQSPRNMYQCQMAKQAIGHPAHNIRTRTDP 671

Query: 681  KLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMC 740
             +Y +   Q+PIVRT  Y    + +YP G N +VAVL+YT YDMEDA+++NK+S+DRG+ 
Sbjct: 672  TMYTVNYLQSPIVRTEGYEM--VKDYPVGINCMVAVLSYTAYDMEDALVINKNSIDRGLF 729

Query: 741  HGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSI 800
             G +Y+TE + L D G        + +R +   +L+  +D DG  Y  + +         
Sbjct: 730  TGYVYKTEKVPL-DKGYFFTYLPSVGQRIQKDDTLYRYVDQDGREYEKRYL--------- 779

Query: 801  YDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQ 860
                          G+E   VD V V  +N     + A    R  R+P+IGDKFSSRHGQ
Sbjct: 780  --------------GTEPGIVDIVRV-FENDMG-ERCATFTIRIVRSPMIGDKFSSRHGQ 823

Query: 861  KGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDAT 920
            KGVCS  WP IDMPF+  +G  PD+IINPHAFPSRMTI ML+ES+A K G L G   D T
Sbjct: 824  KGVCSMHWPGIDMPFTE-SGCVPDIIINPHAFPSRMTIGMLIESIAGKVGCLSGNEQDGT 882

Query: 921  PFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPV 980
             F  S      + G DE     + L   LR  GFNY+G E +YSGV G E   +IF+G V
Sbjct: 883  VFKKSFL-LEQEEGDDEKVRRKEYLCSELRRHGFNYYGNEPMYSGVAGNEFRADIFVGVV 941

Query: 981  YYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDR 1040
            YYQRL+HMV DKFQVR+ G +   TRQP+ GRK+ GGIRFGEMERD+L++HGA+YLL DR
Sbjct: 942  YYQRLKHMVGDKFQVRTKGAVVSTTRQPVGGRKKRGGIRFGEMERDALISHGASYLLQDR 1001

Query: 1041 LHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMET 1100
            L   SD  V + C  C S+L                            C  C +S  ++ 
Sbjct: 1002 LLKSSDSTVFEYCGTCKSILFTN----------------------NGDC-ICGSSD-LKA 1037

Query: 1101 VAMPYVFRYLAAELAAMNIKITLQL 1125
            V MPYVF+YL  EL AMNIK+ + L
Sbjct: 1038 VEMPYVFKYLCCELLAMNIKVQIDL 1062


>gi|313246967|emb|CBY35812.1| unnamed protein product [Oikopleura dioica]
          Length = 1185

 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/1121 (34%), Positives = 614/1121 (54%), Gaps = 95/1121 (8%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CRQ K  YT  +        L +G   V  + +  Q P+M+ + +CHL+G   ++LV+ K
Sbjct: 109  CRQKKTDYTAPVHVTFNLINLSSGESQVVTKKDLLQMPLMVMSSKCHLRGLSPEELVARK 168

Query: 98   EEAAEMGGYFILNGLERVFRSVIL--PKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
            E+  E+GGYFI +G E+V R + +   ++N+P+ + R+ ++ RREGYTD  ++IRC+   
Sbjct: 169  EDHFEIGGYFIASGNEKVIRLLNMNRTRRNFPLGLRRNGWKRRREGYTDAGLMIRCMDNW 228

Query: 156  QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
            + +  + ++      + + F++Q + + +P+  V++AL    DLEI+        ++   
Sbjct: 229  ERTSNMNVHVTKTNEMEVVFYIQKQLFHVPMMTVVRALTSWTDLEIYREFMQTMSDEPNY 288

Query: 216  EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
            +          +R+   L ++Q   LT      + +G+ F+        +S     +  +
Sbjct: 289  DSAV-------KRMLKKLVKIQHHFLTQ----AKFLGQSFRIFDICPAWKSDVEAGQAFL 337

Query: 276  RDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEK 335
            + Y  ++LN++ DK      M +K F +  +T  +D+ DS ++ ++LLPGHL      E 
Sbjct: 338  KRYCLIYLNNDEDKVRAFALMARKAFRISHNTCATDDIDSPESHDVLLPGHLFQSMTLEF 397

Query: 336  LEDWLRKGKKLI-----------QDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIET 384
             E + R    ++            DE+  N   F    + N+ +              + 
Sbjct: 398  FESYQRSVSMIMAKEYSKQLEKGNDEVGQNMLSFAINKIGNMNQ------------HFKY 445

Query: 385  MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPE 444
            ++ TG L T  GL +QQ AG  V AE++NF RF S FR +HRGA F  +R TS RKL   
Sbjct: 446  LIATGNLKTNDGLGMQQLAGIVVGAEKINFARFYSHFRCIHRGAFFMEMRATSPRKLSTA 505

Query: 445  SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
            +WGF+CPVHTPDG PCGLLNH+  T R+    ++   + +          +L+ +G+ P 
Sbjct: 506  AWGFICPVHTPDGPPCGLLNHLAHTVRINVKRENTAKLEE----------LLLEIGVKPC 555

Query: 505  LPKLVKSGPPAVLSVLLDGRVVGVIPSS-EIEKVVAHLRRLKVSAASVIPDDLEVGYVPL 563
              K  +   P    V++DG+ +G I +    + V  +LRRLK S++  +PD LE+ + P 
Sbjct: 556  SIKANEFDVP----VIIDGKQIGWIANGWRAQAVEKYLRRLKTSSSDRVPDTLEIVHCPA 611

Query: 564  --SLGGA--YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDG 619
              + G A  +PG+ L T P +  RP+ N+         IE+IG  EQV++ +        
Sbjct: 612  PENKGEAVMFPGINLLTEPARMYRPLLNL-----REDKIEMIGIMEQVWLHVTV-----N 661

Query: 620  GRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRAD 679
             + +     ++E++P  +LS +A ++P+S+ N   R + QCQMAKQT G+    L  R+D
Sbjct: 662  QKESHELTEYQELYPAALLSELACMSPFSNMNAGARVILQCQMAKQTFGWPSYTLNHRSD 721

Query: 680  QKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGM 739
             K+Y + TPQ P+VR++ +  +G+D+YP GTN ++AV++YTGYD+EDA  ++K S +RGM
Sbjct: 722  NKMYRILTPQEPLVRSHLHDSWGMDDYPLGTNVMIAVISYTGYDLEDATCVSKMSRERGM 781

Query: 740  CHGQIYQTETIDLSDDGNKVD--RGQKLFRRNK-DAKSLHSV-------IDSDGLPYVGQ 789
             +G IY+T+ +DL D    +    G +L  R++ D   L +        +D DGLP+ G 
Sbjct: 782  MYGTIYKTKMVDLQDTAQSMGYRSGLRLGCRDRFDPNELKAYRKIAGDKLDIDGLPFPGG 841

Query: 790  MIHPGEPYCSIYDKTTNSWRTNSRKG-SESVFVDYVAV--DMKNSKNLPQKANIRFRHTR 846
            +    + Y   Y++    +        +E   V+ V V  + +  +   Q+A I+FR  R
Sbjct: 842  IFTYQDAYYCYYNEHEQKYSVGKYDSHAEDAIVESVRVFTNKRPQEGGFQQAAIQFRIAR 901

Query: 847  NPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVA 906
               IGDK +SRHGQKG+CS+LW   DMP++   G+ PDLI NPH FPSRMT+ M++E +A
Sbjct: 902  PINIGDKMASRHGQKGICSRLWATTDMPWTE-NGIVPDLIFNPHGFPSRMTVGMMIEFIA 960

Query: 907  AKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGV 966
             K   ++G+  D+TPF             DE+ +  +  G++L+  G NYHG E +YSG+
Sbjct: 961  GKAAMVNGRVYDSTPFV-----------FDENYTADEHFGKVLKEAGLNYHGYERMYSGI 1009

Query: 967  YGTELTCEIFIGPVYYQRLRHMVSDKFQVRS-TGTMDQITRQPIKGRKRGGGIRFGEMER 1025
             G EL  +IF GPVYYQRLRHMV DKFQ R+  G +D  T+QP+KGR RGGG+R GEMER
Sbjct: 1010 SGEELEADIFFGPVYYQRLRHMVYDKFQARADKGPIDPYTQQPVKGRARGGGVRMGEMER 1069

Query: 1026 DSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPK 1085
            D L++HGAA++  DRL  CSD++   +C++CGSVL+ + + P K   +    +    +  
Sbjct: 1070 DGLISHGAAFICRDRLFHCSDFYKTRICTVCGSVLSVSKVKPDKTKDKNWKLM----SNG 1125

Query: 1086 KVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLG 1126
            K  C  C          +PYV +YLAAELA MN+K+  +  
Sbjct: 1126 KWECRTCGPEAKTLLTDLPYVVKYLAAELAGMNVKLDFKFA 1166


>gi|384244906|gb|EIE18403.1| beta and beta-prime subunits of DNA dependent RNA-polymerase, partial
            [Coccomyxa subellipsoidea C-169]
          Length = 694

 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/754 (50%), Positives = 476/754 (63%), Gaps = 68/754 (9%)

Query: 378  IGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS 437
            + + +E +L TG L + + LDL Q  G+TV AE+LNF R++S FRA+HRGA FA LRTT+
Sbjct: 1    VWSQVEYLLNTGNLVSNSTLDLSQATGFTVVAEKLNFFRYLSHFRAIHRGAYFAQLRTTT 60

Query: 438  VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLI 497
            VRKLLPESWGFLCPVHTPDG PCGLL+H+T+TCRV +      N  D   ++ +I+ V  
Sbjct: 61   VRKLLPESWGFLCPVHTPDGAPCGLLSHLTATCRVVAAPPE--NPED---VQQAIITVAA 115

Query: 498  GVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLE 557
             +GM+P+ P L     P  + V LDGR +G                    A +++P DLE
Sbjct: 116  SLGMVPAAPALAPPALPQYMGVHLDGRAIG------------------FGAETLVPADLE 157

Query: 558  VGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGG 617
            V  VP   GG YPGLYLF+ P + +RPV  + LP       ELIG  EQ+ M I      
Sbjct: 158  VALVPYEAGGPYPGLYLFSGPARMIRPV--LQLPGGCP---ELIGTLEQINMHI------ 206

Query: 618  DGGRRNAFPATHEEIH-PTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKF 676
                      + + +H P     +V       DH  + R+ + C         S Q+++ 
Sbjct: 207  ----------SSKFMHTPKFSFQLVM------DHLHAQRS-FTCTSGD--FSSSAQSVRH 247

Query: 677  RADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVD 736
            R D KLY LQTPQTPI RT  Y +Y +DE+P+GTN IVAVLAYTGYDMEDAMILNKS+VD
Sbjct: 248  RTDAKLYRLQTPQTPIARTQRYDEYHMDEFPSGTNMIVAVLAYTGYDMEDAMILNKSAVD 307

Query: 737  RGMCHGQIYQTETIDLSDD-GNKVDRGQKLFR-RNKDAKSLHSVIDSDGLPYVGQMIHPG 794
            RG+ HG +++TE +DL DD G  + R   L + R++  +     ID DGLP+VG +++PG
Sbjct: 308  RGLAHGTLFKTEGLDLRDDKGKAMVRLSPLAQVRSQGVQKNEERIDVDGLPHVGTVVYPG 367

Query: 795  EPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKF 854
            + Y S  D+ T   +T + KG E   VD V +      NL Q+ANI  R  RNP++GDKF
Sbjct: 368  QAYYSKVDRATGKAKTGNMKGEEVAVVDQVTIVGTADPNL-QRANILMRINRNPVVGDKF 426

Query: 855  SSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHG 914
            SSRHGQKGV SQLWPDI+MPF   TGMRPDLIINPHAFPSRMTI ML+ES+ +K G+L G
Sbjct: 427  SSRHGQKGVLSQLWPDINMPFVAGTGMRPDLIINPHAFPSRMTIGMLMESLVSKAGALQG 486

Query: 915  KFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCE 974
            KF++ +PF +S        G   ++ LV    + L   GF+  G E L SGV G E   +
Sbjct: 487  KFVNGSPFQDS-------DGVGSTQELVKTASDALEGAGFSRLGGETLISGVTGEEFAAD 539

Query: 975  IFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAA 1034
            I+IGPVYYQRLRHMVSDKFQVRSTG ++ +T QPIKGRK GGGIRFGEMERD+LLAHGAA
Sbjct: 540  IYIGPVYYQRLRHMVSDKFQVRSTGPVNALTHQPIKGRKFGGGIRFGEMERDALLAHGAA 599

Query: 1035 YLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKK---VTCHA 1091
            YLLHDRLHT SDY V D C+ CGS+LT   + P +        L     PKK   V C A
Sbjct: 600  YLLHDRLHTSSDYAVMDACASCGSILTP-LLRPAQTTNVGAHLLASQGVPKKIGQVVCRA 658

Query: 1092 CQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
            C+T + M  VA+PYV +YL  ELAAMNIK T  +
Sbjct: 659  CETGRAMTRVALPYVLKYLVTELAAMNIKCTFSI 692


>gi|10434547|dbj|BAB14296.1| unnamed protein product [Homo sapiens]
          Length = 714

 Score =  682 bits (1761), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/749 (48%), Positives = 470/749 (62%), Gaps = 49/749 (6%)

Query: 382  IETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKL 441
             E +  TG L ++TGL L Q +G  V A++LNF+R++S FR VHRGA FA +RTT+VR+L
Sbjct: 9    FEYLFATGNLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRL 68

Query: 442  LPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGM 501
            LPESWGFLCPVHTPDGEPCGL+NH+T+ C V + +    +I          L   +GV  
Sbjct: 69   LPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASI--------PALLCNLGVTP 120

Query: 502  IPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYV 561
            I   P    S       VLLDG +VG +       +   LR  KV     IP  +EV  +
Sbjct: 121  IDGAPHRSYS---ECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEVVLI 177

Query: 562  PLSLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGG 620
            P++   + YPGL+LFT+P + VRPV+N++L  EE     LIG  EQ+FM +   +     
Sbjct: 178  PMTGKPSLYPGLFLFTTPCRLVRPVQNLALGKEE-----LIGTMEQIFMNVAIFED---- 228

Query: 621  RRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQ 680
               A   TH+E+ P  +LSV+AN  P+SDHNQSPRNMYQCQM KQTMGF +   + R+D 
Sbjct: 229  EVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDN 288

Query: 681  KLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMC 740
            KLY LQTPQ+P+VR + Y  Y +D YP GTNAIVAV +YTGYDMEDAMI+NK+S +RG  
Sbjct: 289  KLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVTSYTGYDMEDAMIVNKASWERGFA 348

Query: 741  HGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSI 800
            HG +Y++E IDLS+   + D       +  D + L   +D DGLP++G  +  G+PY S 
Sbjct: 349  HGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQK-LDDDGLPFIGAKLQYGDPYYSY 407

Query: 801  YDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHG 859
             +  T        K  E+  VD + V   ++ +   K   I  R  RNP IGDKF+SRHG
Sbjct: 408  LNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHG 467

Query: 860  QKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDA 919
            QKG+ S+LWP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+A K  +LHG   DA
Sbjct: 468  QKGILSRLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDA 526

Query: 920  TPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGP 979
            TPF  S           E  S ++  GEML+  G+N++G E LYSG+ G EL  +IFIG 
Sbjct: 527  TPFIFS-----------EENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGV 575

Query: 980  VYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHD 1039
            VYYQRLRHMVSDKFQVR+TG  D++T QPI GR   GGIRFGEMERD+LLAHG ++LLHD
Sbjct: 576  VYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHD 635

Query: 1040 RLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP---KKVTCHACQTSK 1096
            RL  CSD  VA VC  CGS+L+     P           PP+ +    +K  C  C  S 
Sbjct: 636  RLFNCSDRSVAHVCVKCGSLLSPLLEKP-----------PPSWSAMRNRKYNCTLCSRSD 684

Query: 1097 GMETVAMPYVFRYLAAELAAMNIKITLQL 1125
             ++TV++PYVFRY  AELAAMNIK+ L +
Sbjct: 685  TIDTVSVPYVFRYFVAELAAMNIKVKLDV 713


>gi|326481496|gb|EGE05506.1| DNA-directed RNA polymerase I subunit beta rpa2 [Trichophyton
           equinum CBS 127.97]
          Length = 1090

 Score =  679 bits (1753), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/900 (42%), Positives = 543/900 (60%), Gaps = 73/900 (8%)

Query: 37  HCRQAKISYTGKLMADVEFQYLDA-GSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
            CR+   +Y GKL A +E++  +      VRE    GQ P+M+++ RCHL+ A   +LV 
Sbjct: 127 ECRERHATYRGKLRARLEYRVNNGEWKESVRE---LGQVPIMIRSNRCHLEKATPSQLVD 183

Query: 96  LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
            KEE+ E+GGYFI+NG E++ R +I+ K+N+P +++R+SF+ R   YT   V +R VR D
Sbjct: 184 HKEESEELGGYFIVNGNEKLIRMLIVGKRNFPTAIIRNSFQKRGSAYTKFGVQLRSVRPD 243

Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
           Q+S T  L+YL +G+V   F  +  EYL+PV ++LKAL++TND EIF  L          
Sbjct: 244 QTSQTNVLHYLNDGNVTFRFSWRKNEYLVPVMMILKALIETNDREIFERLV--------G 295

Query: 216 EKGAVG--SPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAET 273
            +G++G  +  V++RV+++L   +   + +R +C  H+G  F+ V+   +      V   
Sbjct: 296 REGSLGIENTFVTDRVELLLRTYKAYGVHSRSKCRAHLGSKFRFVLGMPEDIPEEDVGTE 355

Query: 274 VIRDYIFVHLND-------NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGH 326
            +R  +  HL +       +NDKFN+++FM++KL++LV      DNPD++ NQE+LL G+
Sbjct: 356 FLRKIVLPHLGNQNVTETQDNDKFNMILFMIRKLYNLVAGDCAPDNPDAVSNQEVLLGGY 415

Query: 327 LITIYLKEKLEDWLRKGKKLIQD-EIENNGKKFD--FFNLANIKKVMEKNPSKQIGTSIE 383
           L  + LKE+LE+WL+    +++D  + N   KF    F    + +++ +  ++ IG ++E
Sbjct: 416 LYGMLLKERLEEWLKSVGPMVRDWRMRNQDAKFTDPKFEREFLTRIIGRT-NENIGGAME 474

Query: 384 TMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLP 443
             L TG L + TGLDLQQ +GYTV AE++NF RFIS FR +HRG+ FA L+TT+VRKLLP
Sbjct: 475 YFLSTGNLVSPTGLDLQQPSGYTVMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLP 534

Query: 444 ESWGFLCPVHTPDGEPCGLLNHMTSTCRVA-SYYDSRGNIRDFSKMRTSILRVLIGVGMI 502
           ESWGFLCPVHTPDG PCGLLNH+   C ++ S  D  G           I  VL G+G+ 
Sbjct: 535 ESWGFLCPVHTPDGSPCGLLNHLAHKCLISTSNLDVSG-----------IPGVLAGLGVT 583

Query: 503 PSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVP 562
                 ++   P    V LDG+++G     +   +   LR  KV     IP +LE+GYVP
Sbjct: 584 SESSCSIEESIP----VQLDGKILGYCTPKQSRAIADTLRYWKVQGHKQIPVELEIGYVP 639

Query: 563 LSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRR 622
            S GG YPG+Y+F+   +  RPV+ + L       ++ +GPFEQ +MEI C        R
Sbjct: 640 CSNGGQYPGVYMFSEAARMYRPVKYLPL-----DKLDYVGPFEQPYMEIACVASDI---R 691

Query: 623 NAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKL 682
           N   +TH E  PT +LS++AN+TP+SD NQSPRNMYQCQM KQ MG    A+ +R D KL
Sbjct: 692 NGV-STHIEFDPTHILSILANMTPFSDFNQSPRNMYQCQMGKQAMGTPGTAIDYRTDNKL 750

Query: 683 YHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG 742
           Y LQT QTP+VR   Y  YG+D +P G NA+VAV++YTGYDM+DAMI+NKSS +RG  +G
Sbjct: 751 YRLQTGQTPVVRPPLYNAYGLDNFPNGMNAVVAVISYTGYDMDDAMIINKSSHERGFGYG 810

Query: 743 QIYQTETIDLSDDGNKVDRGQ------KLFRRNKDA---KSLHSVIDSDGLPYVGQMIHP 793
            IY+T+   L DD     RG+      KLF             + +D DGLP++G  +  
Sbjct: 811 TIYKTKIYAL-DDKESRGRGKSKRAITKLFGFAPGGLVKAEWKAQLDEDGLPHIGAKVSE 869

Query: 794 GE----PYCSIYDKTTNSWRTNSR-------KGSESVFVDYVAVDMKNSKN-LPQKANIR 841
           G      +   YD  T+++    +       K  E  F+D V V    + N + Q  +I+
Sbjct: 870 GSLVGAWHTVQYDPATDTYINVDKQTHFLKYKDGEEGFIDSVRVLGSETGNEVCQAVSIK 929

Query: 842 FRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAML 901
           +R  R P+IGDKFSSRHGQKGV SQLWP  DMPFS  +G++PD+IINPHAFPSRMTI  +
Sbjct: 930 YRVPRRPVIGDKFSSRHGQKGVLSQLWPATDMPFSE-SGIQPDVIINPHAFPSRMTIVAV 988


>gi|209881586|ref|XP_002142231.1| DNA-directed RNA polymerase, beta subunit family protein
            [Cryptosporidium muris RN66]
 gi|209557837|gb|EEA07882.1| DNA-directed RNA polymerase, beta subunit family protein
            [Cryptosporidium muris RN66]
          Length = 1341

 Score =  677 bits (1748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/1224 (36%), Positives = 634/1224 (51%), Gaps = 165/1224 (13%)

Query: 39   RQAKISYTGKLMADVEFQ-YLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            R   +SY+  L   +EF+ Y  +    VR     G  P+M+++  CHL      +LV+  
Sbjct: 129  RNGHLSYSAPLW--IEFECYNSSSKSSVRHNLFAGSIPIMVRSLACHLYSLSPNELVANG 186

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            E+  E+GGYFI+NG ERV R VI  + NYP+ + RS F  R    T+ A+++R +R D +
Sbjct: 187  EDPNEVGGYFIINGNERVIRYVIQQRCNYPVGLKRSRFTSRDIFGTEYAILLRSLRNDGT 246

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLT---CC-----Y 209
            S    LY   +        L  +E+LLP   VL A+    D +   +     CC     Y
Sbjct: 247  STANYLYGTTDNQCVYRILLNRQEWLLPFWNVLLAVGSIYDAKTLRNKILQYCCNTRDEY 306

Query: 210  DEKY------KKEKGAVGSPLVSERV--KIILAEVQDLSLTTRLQCLQHIGEH-FQPVID 260
            D  Y        E G   S  V   V          D+ +      L ++G+  ++ V+ 
Sbjct: 307  DPLYGVINMLTIEWGLDNSSGVENSVIPPSYDGAFGDIEIIENRH-LHNLGKLVWEGVVF 365

Query: 261  GLQSESYYAVA-ETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQ 319
             L   S Y  A   +I ++I VHL + N K   LI M  KL  L       ++ DS   Q
Sbjct: 366  YLPPGSLYQDAGRFIIDNHILVHLPEWNAKLECLILMFIKLLKLQYGQIREESIDSFAYQ 425

Query: 320  EILLPGHLITIYLKEKLEDWLRKGKKLIQDEIEN-NGKKFD------------------- 359
            EIL  G+L    LK+ +  +L+K + +   EI N N  K +                   
Sbjct: 426  EILSSGNLYASVLKDAIFSFLQKIRMIYITEIRNRNSSKSEKEASDELPLPYSSAALDLL 485

Query: 360  ----FFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFL 415
                FF  + I+ +        I   I+  + TG + T T LDLQQ +G+TV A+RLNF 
Sbjct: 486  RDDSFFKTSLIRNI------SMIPKRIQYFMATGNIKT-TQLDLQQLSGWTVVADRLNFN 538

Query: 416  RFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASY 475
            RF+S FRAVHRG  F  ++TT VRKL+ E+WGFLCPVHTPDGEPCGLL H++      + 
Sbjct: 539  RFLSHFRAVHRGQFFTTMKTTDVRKLMGETWGFLCPVHTPDGEPCGLLLHLSQDTIPVTQ 598

Query: 476  YDSRG---NIRDFSKMRT-------SILRVLIGVGMIPSL--PKLVKSGPPAVLSVLLDG 523
            ++ +    N+RD+   +          L +  G   +  +  P L KS P     V+LDG
Sbjct: 599  FEIQSTLKNLRDYLVGQNIPCDDGLGTLSIQWGSLNLDDIYVPDLSKSVP-----VMLDG 653

Query: 524  RVVGVIPSSEIEKVVAHLRRLKVSAA-SVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFV 582
            RV+  IP  +       LR LK S   S++P   E+  +P   G  + G+++FT+P + V
Sbjct: 654  RVMFHIPKLKFTFWQEKLRNLKWSKTPSILPVHTEIACIPPDCG-VFSGIFMFTAPGRLV 712

Query: 583  RPVRNISLPSEESQNIELIGPFEQVFMEI------------------------------- 611
            RPV ++     +S  I+ IGP  Q +M+I                               
Sbjct: 713  RPVLHL-----KSNKIDWIGPLAQPWMDIGVTEEETQKSIKLYNLQMKLFGLYRNDNITS 767

Query: 612  --RCPDGGDGGRR------------NAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNM 657
                 D  D  +             N    TH+E+HP+ +LS+ A+L PY+ HNQSPRNM
Sbjct: 768  DIETTDNMDKNQIEEMIKKDYTLGCNPVMYTHQELHPSTILSITASLIPYAHHNQSPRNM 827

Query: 658  YQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVL 717
            YQCQM KQTMG    +  +R D ++Y + TPQ P+V T  Y  YG  EYPTGTNAIVAV+
Sbjct: 828  YQCQMLKQTMGTPCYSYPYRTDNRMYRIITPQNPLVITKGYASYGFSEYPTGTNAIVAVI 887

Query: 718  AYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDG--NKVDRGQKLFRR-NKDAKS 774
            +++GYDMEDAM+LNK+S +RG+ H  +Y+T+ +  + +    K D     F     D K 
Sbjct: 888  SHSGYDMEDAMVLNKASYERGIFHACVYKTKILFAAPNSVIKKSDAESYRFHNIGPDGKL 947

Query: 775  LHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTN----SRKGSESVFVDYV------ 824
            +   + +DGLP +GQ +  G P C +    +    +N    +    E  +V+ +      
Sbjct: 948  VIKELGADGLPMIGQKLVKGSPMCRVEKLGSGGVISNAIVQTYHDDEEAYVEKINRVGSG 1007

Query: 825  -AVDMKNSKNLP---------------QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLW 868
             + +  +   L                +K +++ R  RNP++GDKF+SRHGQKG+ S LW
Sbjct: 1008 LSTESHSDSTLGGSGGPGGSEYSSGYGEKISLKLRIVRNPMVGDKFASRHGQKGILSMLW 1067

Query: 869  PDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHG-KFMDATPFANSV- 926
            P  +MPF G +G+ PD++ NPH FPSRMT+ ML+E +A K   LHG   +DATPF  ++ 
Sbjct: 1068 PHENMPF-GESGIVPDILFNPHGFPSRMTVGMLIECMAGKAACLHGASALDATPFHRNIT 1126

Query: 927  -KKT---NGDTGTDESK-SLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVY 981
             K+T   + + G D SK S VD  G+ L   GF Y G E L++G+ GTE+ C IF+G +Y
Sbjct: 1127 DKQTILEDKEMGIDLSKQSTVDYFGKALLKTGFQYFGCEPLFNGMTGTEMPCHIFMGVIY 1186

Query: 982  YQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRL 1041
            YQRLRHMV+DK QVRSTG +D +TRQP+KGRKR GGIRFGEMERDSL+++G + ++ DRL
Sbjct: 1187 YQRLRHMVADKAQVRSTGPIDALTRQPVKGRKRHGGIRFGEMERDSLISYGVSSIIADRL 1246

Query: 1042 HTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETV 1101
              CSD H A VC  CG + +A  I P+K              P    C  C+T      +
Sbjct: 1247 LKCSDEHKAYVCPYCGLIFSA--ILPRKTT--NFQNRLATTLPHVAICKVCKTP--CRLI 1300

Query: 1102 AMPYVFRYLAAELAAMNIKITLQL 1125
             +PYVFRYL  ELA MNI I L+L
Sbjct: 1301 TLPYVFRYLCNELATMNIVIRLEL 1324


>gi|300708202|ref|XP_002996285.1| hypothetical protein NCER_100631 [Nosema ceranae BRL01]
 gi|239605574|gb|EEQ82614.1| hypothetical protein NCER_100631 [Nosema ceranae BRL01]
          Length = 1054

 Score =  677 bits (1747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/1106 (37%), Positives = 604/1106 (54%), Gaps = 145/1106 (13%)

Query: 39   RQAKISYTGKLMADVEFQYLDAGSPVVRERFN-FGQFPVMLKTRRCHLQGADSQKLVSLK 97
            R    +Y GK+       Y D    ++   F   G FP+M+K+  CHL   D     S+ 
Sbjct: 70   RLTNTTYKGKIFIKFSLFYDDK---LISSEFRPCGGFPIMVKSGYCHL--LDEPNPNSID 124

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            E+  ++GGYFI+NG++++ R  I+ K+NYP ++ R     + + YTD  + IR V  D+ 
Sbjct: 125  EDENDIGGYFIINGIDKLIRFHIMQKRNYPFALCRPQ---KNKNYTDNYIYIRSVGDDEL 181

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
                 L+Y ++G V   F+ +  E+ +P+ I+LKALV+T D EI+  L    ++ Y    
Sbjct: 182  GHVGYLHYSIDGDVFYRFFRRRNEFHIPIIIILKALVNTTDQEIYKMLN---NDIY---- 234

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
                       + + L +     + +R +C+++IG  F+  ++   +E   A  E ++  
Sbjct: 235  -----------ITVALKKATKEEVFSRAECIEYIGARFKQSMNASTNEE--ACIE-ILDT 280

Query: 278  YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
            Y+  HL  N DKFN LI+ ++KLFSLV    + ++ DS  + E+L    L     K+KLE
Sbjct: 281  YVCPHLTKNQDKFNFLIYSIKKLFSLVKGEIIPEDSDSPASHEMLTETQLFANIFKDKLE 340

Query: 338  DWLRKGK-KLIQDEIENNGKKFDFF--------NLANIKKVMEKNPSKQIGTSIETMLKT 388
            D  R  K ++++  +  NGK+ D+         +L N     +      +G + E+ L T
Sbjct: 341  DLKRSFKAQIMRTFLRKNGKRKDYEKNKEPILPSLENCMHAFKYLDCASVGRAFESFLST 400

Query: 389  GRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGF 448
            G +  Q   D+ Q AG+++ AER+NF R+IS FR+++RG+ F  +RTT VRKL  ESWGF
Sbjct: 401  GNINIQNSSDILQSAGFSIMAERINFYRYISHFRSLNRGSFFQEVRTTGVRKLRSESWGF 460

Query: 449  LCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKL 508
             CPVHTPDG PCGLL H+TS   + ++     N  D++        +L   G+IPS  + 
Sbjct: 461  FCPVHTPDGTPCGLLTHLTSAASLVNF----TNNFDYN--------LLYSFGIIPSHRQF 508

Query: 509  VKSGPPAVLSVLLDGRVVGVI--PSSEIEKVVAHLRRLKVSAASVIPDDLEV-GYVPLSL 565
            +       +SV  +G ++G    P     K+  + R   +S        LE+  Y  L L
Sbjct: 509  ING-----ISVFYNGLLIGYTFNPCDLTNKLRKYRRDNNLS--------LEIIHYSGLKL 555

Query: 566  GGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPD----GGDGGR 621
               Y  + ++ +  + +RPV +     +ES  IE++G  EQVF++I   D          
Sbjct: 556  ---YETVLIYNTVSRLIRPVLH-----KESGKIEMVGIMEQVFLDINLNDMTVYKDSPNI 607

Query: 622  RNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQK 681
               F   ++E+    + S+VA+LTP+S++NQSPRNMYQCQMAKQ+MG     +K R D K
Sbjct: 608  SKCF--EYQEVDNQNIFSIVASLTPFSEYNQSPRNMYQCQMAKQSMGHPAHNIKTRNDSK 665

Query: 682  LYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCH 741
            +Y L   Q PIV+   Y+   + +YP G N IVAVL+YT YDMEDAM++NK S++RG+  
Sbjct: 666  IYMLNYTQHPIVQNKKYSL--VQDYPLGLNCIVAVLSYTAYDMEDAMVINKGSMERGLFT 723

Query: 742  GQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIY 801
            G +Y+ + I+L  D                            LP VG  I+ G+    +Y
Sbjct: 724  GYVYKVDKIELPKD-----------------------CCFSYLPDVGCKINTGD---ILY 757

Query: 802  DKTTNSWRTNSR--KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHG 859
              T    +  S   K S+   ++  +VD+  ++NL   ANI+FR  RNP IGDKF SRHG
Sbjct: 758  KYTDFGGKETSVLCKSSDGYIIE--SVDIFENENLC--ANIKFRIIRNPNIGDKFCSRHG 813

Query: 860  QKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDA 919
            QKGVCS  WP IDMPF+  +G+ PD+IINPHAFPSRMTI ML+ES+A K G   G+  DA
Sbjct: 814  QKGVCSMHWPSIDMPFTE-SGIVPDIIINPHAFPSRMTIGMLIESMAGKSGCCLGEIQDA 872

Query: 920  TPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGP 979
            TPF  +    N D   +E       +G+ L   GFNY+G E +YSG+ GTE   +IFIG 
Sbjct: 873  TPFEKNTFLNNNDVQRNEP-----SIGDQLIQHGFNYYGNEPMYSGITGTEFKTDIFIGV 927

Query: 980  VYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHD 1039
            V+YQRLRHMV+DK+QVR++G +   TRQP+ GRK  GG+RFGEMERD+++AHG  YLL+D
Sbjct: 928  VFYQRLRHMVNDKYQVRASGAVVATTRQPVGGRKNLGGVRFGEMERDAMIAHGTPYLLND 987

Query: 1040 RLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGME 1099
            RL  CSD+ V   C  C S+L A                       K  C      K   
Sbjct: 988  RLLKCSDHSVFTFCCTCKSILFAN--------------------NDKCICGG----KIFN 1023

Query: 1100 TVAMPYVFRYLAAELAAMNIKITLQL 1125
            TV MPYVF+YL +EL AMNI++ L +
Sbjct: 1024 TVEMPYVFKYLCSELLAMNIRVILDV 1049


>gi|401825637|ref|XP_003886913.1| DNA-directed RNA polymerase subunit B [Encephalitozoon hellem ATCC
            50504]
 gi|392998070|gb|AFM97932.1| DNA-directed RNA polymerase subunit B [Encephalitozoon hellem ATCC
            50504]
          Length = 1046

 Score =  675 bits (1742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/1113 (37%), Positives = 600/1113 (53%), Gaps = 158/1113 (14%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
             CR+  ++Y GK+   V   Y D+   +  ++F  G FP+M++++ CHL+  +S   V  
Sbjct: 68   ECRERGLTYRGKIAVRVSLFY-DSKHVMTEDKFA-GYFPIMVRSKLCHLKNVESMNRVGE 125

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
             EE  E+GGYFI+NG+++  R  I+ K+N+  +  +   R +   +T   V +RCV KD+
Sbjct: 126  DEE--EIGGYFIVNGIDKFVRLGIIQKRNHIFAFKQ---RKKESFFTGYGVSMRCVGKDE 180

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
                  LYY  +G+V +  + +   +L P+ ++L+ALV+T D E+F              
Sbjct: 181  IGHLNSLYYCTDGNVIIKIFYKRSTFLFPLVLILRALVNTTDEELFE------------- 227

Query: 217  KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
              A+G     ++   +L    + ++ +R +CL +IG  F  VID     +    AE V+ 
Sbjct: 228  --ALGG---GDKAIHLLKCFAEYNVFSRTECLDYIGSRFLAVID---VGTKVGAAEEVLS 279

Query: 277  DYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
             Y+  HL+ N DKFN L+   +KLFS V++    D+ DS  N E+L    +++ ++++K+
Sbjct: 280  KYVASHLSSNLDKFNFLVLAAKKLFSFVNNEIAEDDFDSSGNHELLTVTQILSSFIRDKI 339

Query: 337  EDWL-------RKG--------KKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTS 381
            E+++       RK         +KL +DE   +G   D  +L  IK+V +K P   IG  
Sbjct: 340  EEYMKLFRIICRKAYFKNAGGKRKLEEDEGVEDGLYEDKLDLTEIKEVFKKTPI-SIGHK 398

Query: 382  IETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKL 441
            I+  L  G     +  D+ Q+ G+ + AER+NF ++++  R+++RG+  + L  T VRKL
Sbjct: 399  IDMFLYGGNAVFSSCSDILQKTGFVITAERINFYKYLTNLRSINRGSHISSL-VTDVRKL 457

Query: 442  LPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGM 501
             PESWGF+CPVHTPDG PCG+L HM     V S       + DF         +    G+
Sbjct: 458  RPESWGFICPVHTPDGAPCGILLHMAKGAEVVS------KVEDFDT------DIFFEFGV 505

Query: 502  IPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYV 561
            +P++      G    + VL+DGR++G   S  I  +V  LR  KV       ++L++  V
Sbjct: 506  VPAI-----RGAKMDVPVLVDGRIIGSTSSPSI--LVRMLREYKVK------NNLKIEIV 552

Query: 562  PLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGR 621
                   +P + +F S  +F R V N  L SEE      IG  EQVF+ I   +G   G 
Sbjct: 553  YSEGPKMFPSVCVFNSVGRFARKVMNRKLNSEE-----WIGIMEQVFLSIDVEEGKGEG- 606

Query: 622  RNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQK 681
                   + EI  T +L ++A LTPYSDHNQSPRNMYQCQMAKQ +G     +K R D  
Sbjct: 607  ------DYYEIDKTNILGILAELTPYSDHNQSPRNMYQCQMAKQAIGIPAYNIKTRTDSS 660

Query: 682  LYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCH 741
            +Y +   Q+PIVRT  Y    +  YP G N +VAVL+YT YDMEDA++++K+S+DRG+  
Sbjct: 661  MYTVNYLQSPIVRTKGYDL--VKNYPVGINCMVAVLSYTAYDMEDALVISKNSIDRGLFT 718

Query: 742  GQIYQTETIDLSDD---------GNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIH 792
            G IY+TE + L            G ++++G  L+R                  YV Q   
Sbjct: 719  GYIYKTEKVSLEKGRYFTHLLPVGERIEKGLVLYR------------------YVDQ--- 757

Query: 793  PGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGD 852
             G  Y S Y +            +E   +D V V   +S    + A    R  RNP IGD
Sbjct: 758  EGREYESKYFE------------AEGGVIDSVRVFDNDSGE--RCATFTIRIVRNPSIGD 803

Query: 853  KFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSL 912
            KFSSRHGQKGVCS  WP +DMPF+  +G  PD+IINPHAFPSRMTI ML+ES+A K G L
Sbjct: 804  KFSSRHGQKGVCSMNWPTVDMPFTE-SGYVPDIIINPHAFPSRMTIGMLIESIAGKVGCL 862

Query: 913  HGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELT 972
             G   D T F   +      +G DE     + L + L+  GFNY+G E +YSG+ G EL 
Sbjct: 863  SGNVQDGTAFERGLL-----SGEDEKNRRKELLCKELQEHGFNYYGNEPMYSGISGNELR 917

Query: 973  CEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHG 1032
             +IF+G VYYQRL+HMV DKFQVR+ G +   TRQP+ GRK+ GGIRFGEMERD+L++HG
Sbjct: 918  VDIFVGVVYYQRLKHMVGDKFQVRTKGAVVSTTRQPVGGRKKQGGIRFGEMERDALISHG 977

Query: 1033 AAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHAC 1092
            A++LL DRL  CSD  + + C  C S+L                            C  C
Sbjct: 978  ASHLLQDRLLKCSDGTMFEYCGTCKSILFTN----------------------NGDC-IC 1014

Query: 1093 QTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
             +S  ++TV MPYVF+YL  EL AMNI++ + L
Sbjct: 1015 GSSD-LKTVEMPYVFKYLCYELLAMNIRVKIDL 1046


>gi|270012190|gb|EFA08638.1| hypothetical protein TcasGA2_TC006301 [Tribolium castaneum]
          Length = 848

 Score =  674 bits (1738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/858 (42%), Positives = 513/858 (59%), Gaps = 58/858 (6%)

Query: 270  VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
            +A+ +++  I +HL+   DKFN+L+FM QKLF  V      +  D++  QE+LL GHL  
Sbjct: 40   IADFILKKCIMIHLDKPEDKFNMLVFMCQKLFVFVQDKCKPEGADAVMMQELLLGGHLYL 99

Query: 330  IYLKEKLEDWLRKGK-KLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKT 388
              +KE+L+ WL   K  +++      G      +L+  + +     S  +  + E  L T
Sbjct: 100  QLIKERLQGWLFGLKSNILKRSSTLTG------HLSQTEILQAAKRSGGLENAFEMFLAT 153

Query: 389  GRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGF 448
            G + + +GL L Q  G T+ AE +N +R++S F+AVHRGA F  +RTT VR+LLP++WGF
Sbjct: 154  GNITSSSGLGLMQDKGLTIVAENINRMRYMSHFKAVHRGAFFQEMRTTEVRQLLPDAWGF 213

Query: 449  LCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKL 508
            +CPVHTPDG PCGLLNH+T+ C V    D+R           +I  +L  +GM+ +L  +
Sbjct: 214  ICPVHTPDGAPCGLLNHLTTNCSVTDVPDARK--------VENIPIILTRLGMV-ALKYV 264

Query: 509  VKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL-SLGG 567
               G      V+LDGRV+G +      K+V  LR  K+    V P+ LE+  VPL  +  
Sbjct: 265  ASVGFDQNYVVVLDGRVLGYVRRDLAPKLVEQLRLCKIKGEEV-PNTLEIVLVPLMKVTA 323

Query: 568  AYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC--PDGGDGGRRNAF 625
             +PGLYLFT P + +RP+ N+     +++ +E +G FEQV+M+I C  PD    G     
Sbjct: 324  QFPGLYLFTGPARMMRPLLNL-----KTKEVEFVGTFEQVYMDI-CVSPDEYYKG----- 372

Query: 626  PATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHL 685
              TH E+     LS +A L P  D NQSPRNMYQCQM KQTMG      + +++ KLY L
Sbjct: 373  VTTHMELSKLAFLSNLAQLIPMPDCNQSPRNMYQCQMGKQTMGTPCHNWRSQSETKLYRL 432

Query: 686  QTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIY 745
            QTP TP+ R   Y    +D++  GTNAIVAV++YTGYDMEDAMI+NK++ +RG  HG IY
Sbjct: 433  QTPATPLFRPVHYDNINLDDFAMGTNAIVAVISYTGYDMEDAMIINKAADERGFAHGSIY 492

Query: 746  QTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTT 805
            +TE + L  + +        F RN +   L   +D+DGLP +G+ +  G+P    Y    
Sbjct: 493  KTEFVTLEHESS-------YFCRNPEKPELAEFLDTDGLPIIGRRMKDGDPLYCYYSVDE 545

Query: 806  NSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCS 865
            + ++     G E  FVD V +   + +   + A   FR  RNP +GDKF+SR GQKG+CS
Sbjct: 546  SVYKVTKFSGKEECFVDMVKL-CASFETTNRTACFTFRVPRNPNVGDKFASRAGQKGICS 604

Query: 866  QLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANS 925
            Q WP  D+PF+  TG+ PD++ NPH FPSRMTIAM++E +A K  +LHG   DATPF   
Sbjct: 605  QKWPMEDLPFTE-TGLVPDIVFNPHGFPSRMTIAMMIEVMAGKSAALHGLVHDATPF--- 660

Query: 926  VKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRL 985
             K T  DT        +D  G +L   G+NY+G E +YSG+ G E+T +IF G V+YQRL
Sbjct: 661  -KFTEEDTA-------IDYFGRLLEAGGYNYYGTETMYSGIDGREMTAQIFFGIVHYQRL 712

Query: 986  RHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCS 1045
            RHMVSDK+QVRSTG  D +TRQP+KGRKRGGG+RFGEMERDSL++HGA++LL DRL  CS
Sbjct: 713  RHMVSDKWQVRSTGPTDILTRQPLKGRKRGGGVRFGEMERDSLISHGASFLLQDRLFHCS 772

Query: 1046 DYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPY 1105
            D   A +C+ CG++L    +      I  +      ++  K TC  C   + +  + +PY
Sbjct: 773  DKTTAFICTSCGTLLGPVTV------ITRVAE-KANQSTCKETCRLCGHGRDISEIQIPY 825

Query: 1106 VFRYLAAELAAMNIKITL 1123
            +F++   ++A+ NI + +
Sbjct: 826  IFKFFVTQMASCNINVKM 843


>gi|396081035|gb|AFN82654.1| DNA-directed RNA polymerase subunit B [Encephalitozoon romaleae
            SJ-2008]
          Length = 1046

 Score =  667 bits (1721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/1115 (36%), Positives = 598/1115 (53%), Gaps = 162/1115 (14%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
             CR+  ++Y GK++A V   Y D    +  ++F  G FP+M++++ CHL+  ++   V  
Sbjct: 68   ECRERGLTYKGKMVARVSLFY-DNKHVMTEDKFA-GYFPIMVRSKLCHLRNVENMNKVG- 124

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
             E+  E+GGYFI+NG+++  R  I+ K+N+  +  +   R +    T   V IRCV KD+
Sbjct: 125  -EDEGEVGGYFIVNGIDKFIRLGIIQKRNHIFAFKQ---RKKENFLTGYGVSIRCVGKDE 180

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
                  LYY  +G+V +  + +   +L P+ ++L+AL++T D E+F              
Sbjct: 181  IGHLNSLYYCTDGNVIIKIFYRRSTFLFPLVLILRALINTTDEELFE------------- 227

Query: 217  KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID-GLQSESYYAVAETVI 275
              A+G     E+   +L    + ++ +R +CL +IG  F   I+ G + E+    A+ ++
Sbjct: 228  --ALGG---GEKAIHLLKCFAEYNVFSRAECLDYIGSRFSAAINVGTKVEA----AKELL 278

Query: 276  RDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEK 335
              Y+  HL  N DKFN L+   +KLFS VD+  V D+ DS  N E+     +++ ++K+K
Sbjct: 279  SKYVASHLTSNLDKFNFLVLAAKKLFSFVDNEIVEDDFDSPGNHELFTVTQVLSSFIKDK 338

Query: 336  LEDWLR--------------KGKKLIQDEIENNGKKF-DFFNLANIKKVMEKNPSKQIGT 380
            +E+++R               GK+ ++ + E     + D  +L+ IK++ +K P   IG 
Sbjct: 339  IEEYMRLFPIIYKKTYFKDGSGKRKLEKDSEVEDDLYEDKLDLSKIKEIFKKTPI-NIGQ 397

Query: 381  SIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRK 440
             ++  L  G     +  D+ QR G+ + AER+NF R++   R+++RG+  + L  T +RK
Sbjct: 398  KLDLFLYGGSTVLTSCSDILQRTGFVITAERINFYRYLCNLRSINRGSYISSL-VTDIRK 456

Query: 441  LLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVG 500
            L PESWGF+CPVHTPDG PCG+L HM     V S         DF       + VL   G
Sbjct: 457  LRPESWGFICPVHTPDGAPCGILLHMAKGAEVVS------KAEDFD------IDVLFEFG 504

Query: 501  MIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGY 560
            ++P     V  G    + VL+DG+V+G   +S     V  LR  KV       ++L++  
Sbjct: 505  VVP-----VIRGVRMDVPVLVDGKVIG--STSSPHTFVRMLREYKVK------NNLKIEI 551

Query: 561  VPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGG 620
            V       +P + +F S  +F R V N  L SEE      IG  EQVF+ I    G   G
Sbjct: 552  VYSEGPKMFPSVCVFNSMGRFTRKVMNRRLNSEE-----WIGIMEQVFLNIDVEKGKGEG 606

Query: 621  RRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQ 680
                    + EI  T +L ++A LTPYSDHNQSPRNMYQCQMAKQ +G     +K R D 
Sbjct: 607  -------DYYEIDKTDILGILAGLTPYSDHNQSPRNMYQCQMAKQAIGLPAYNIKARVDS 659

Query: 681  KLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMC 740
             +Y +   Q+PIVRT  Y    + +YP G N +VAVL+YT YDMEDA++++K+S+DRG+ 
Sbjct: 660  SMYTINYLQSPIVRTKGYDL--VKDYPVGVNCMVAVLSYTAYDMEDALVISKNSIDRGLF 717

Query: 741  HGQIYQTETIDLSDD---------GNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMI 791
             G +Y+TE + L            G  ++RG  L+R                  YV Q  
Sbjct: 718  TGYVYKTEKVSLEKGHYFTYLLSVGKGIERGSVLYR------------------YVDQ-- 757

Query: 792  HPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQK-ANIRFRHTRNPII 850
              G  Y S Y +            +E   +D V V      ++ ++ A    R  RNP I
Sbjct: 758  -SGREYESKYYE------------AEGGIIDSVRV---FDNDIGERCATFTIRIVRNPSI 801

Query: 851  GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGG 910
            GDKFSSRHGQKGVCS  WP +DMPF+  +G  PD+IINPHAFPSRMTI ML+ES+A K G
Sbjct: 802  GDKFSSRHGQKGVCSMHWPTVDMPFTE-SGYVPDIIINPHAFPSRMTIGMLIESIAGKVG 860

Query: 911  SLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTE 970
             L G   D T F  S       +G DE+    + L E L+  GFNY+G E +YSG+ G E
Sbjct: 861  CLSGSIQDGTAFEKSFF-----SGEDENGKEKEYLCEELQRHGFNYYGNEPMYSGISGNE 915

Query: 971  LTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLA 1030
               ++F+G VYYQRL+HMV DKFQVR+TG +   T+QPI G+K+ GGIRFGEMERD+L++
Sbjct: 916  FRVDVFVGVVYYQRLKHMVGDKFQVRTTGPVVSTTQQPIGGKKKQGGIRFGEMERDALIS 975

Query: 1031 HGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCH 1090
            HGA++LL DRL  CSD  + + C +C S+L                            C 
Sbjct: 976  HGASHLLQDRLLKCSDGTIFEYCGVCKSILFTN--------------------NGDCVC- 1014

Query: 1091 ACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
                S  ++ V MPYVF+YL  EL AMNIK+ + L
Sbjct: 1015 ---GSNDLKIVEMPYVFKYLCYELLAMNIKVKIDL 1046


>gi|159485654|ref|XP_001700859.1| hypothetical protein CHLREDRAFT_113199 [Chlamydomonas reinhardtii]
 gi|158281358|gb|EDP07113.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 720

 Score =  663 bits (1711), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/761 (49%), Positives = 480/761 (63%), Gaps = 65/761 (8%)

Query: 378  IGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS 437
            +G+  E +L TG L +++GLDL Q  G+TV AE+LNF R++S FR+VHRGA FA LRTT+
Sbjct: 11   VGSKFEYLLNTGNLVSRSGLDLSQATGFTVVAEKLNFFRYLSHFRSVHRGAYFAELRTTT 70

Query: 438  VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLI 497
            VRKLLPESWGF+CPVHTPDG PCGLLNH T+ C + +   S   +         I++VL 
Sbjct: 71   VRKLLPESWGFMCPVHTPDGAPCGLLNHFTAACSIVTQGSSNEELTSLG-----IMQVLT 125

Query: 498  GVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLE 557
             +GM P+ P L    PP  L V LDGRVVG +             R   +AA+++P  LE
Sbjct: 126  ALGMSPAAPALSPPPPPDYLCVQLDGRVVGHV-------------RSGAAAAALVPYHLE 172

Query: 558  VGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGG 617
            V +VP  LGG +PG++LF                   SQ+  +I P  QV        GG
Sbjct: 173  VVHVPPLLGGPFPGVFLF-------------------SQSARMIRPVVQVRGRGLRGGGG 213

Query: 618  DGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQ----MAKQTMGFSVQA 673
            + GR+  +    E  H  G+  +  +  P     + PR     +    MAKQTMG   QA
Sbjct: 214  ERGRK--WGCVREWRHGEGLSVLHVHPLPRRRPRRQPRPGLHARRAGAMAKQTMGTPGQA 271

Query: 674  LKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKS 733
             + R D K+Y +QTPQ PI RT  Y +Y +DE+P GTNAIVAVLAYTGYDMEDAMILNKS
Sbjct: 272  TQHRTDTKVYRIQTPQAPICRTIRYAEYKMDEFPNGTNAIVAVLAYTGYDMEDAMILNKS 331

Query: 734  SVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHS--VIDSDGLPYVGQMI 791
            +V+RG+ H  +Y+TE ++L ++  +   G++ F      +       I+ DGLP VG +I
Sbjct: 332  AVERGLAHASLYKTECVNLKEE--RGGGGKQYFAATPHTQMTRDGDRIEPDGLPAVGSII 389

Query: 792  HPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIG 851
             PG+ + +  D  +   +++  KG E   VD V V+ +    LPQ+ANIR R  RNP+IG
Sbjct: 390  WPGQVFYATRDDQSGKSKSHKLKGEEVAVVDQVGVEGRGLGGLPQQANIRLRFNRNPMIG 449

Query: 852  DKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGS 911
            DKF+SRHGQKGV S LWPD DMPF   TG+RPDLIINPHAFPSRMTI ML+ES+ +KGG+
Sbjct: 450  DKFASRHGQKGVLSILWPDTDMPFCAATGIRPDLIINPHAFPSRMTIGMLVESLVSKGGA 509

Query: 912  LHGKFMDATPF--ANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGT 969
            L G+F+DA+PF  A+ V+K N            +  G  L   GF+ +G E + SGV G 
Sbjct: 510  LAGQFVDASPFQRADGVEKGNA----------TERWGAYLERQGFSRYGQETMISGVTGQ 559

Query: 970  ELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLL 1029
            E+ C+I+IGPVYYQRLRHMVSDKFQVRSTG ++ +TRQPIKGRK GGGIRFGEMERDSLL
Sbjct: 560  EMPCDIYIGPVYYQRLRHMVSDKFQVRSTGPINAMTRQPIKGRKFGGGIRFGEMERDSLL 619

Query: 1030 AHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRA---IREIGGLPPARAPKK 1086
            AHGAAYLLHDRLH CSDYHVADVC  CGS+L A    P   A      + G        K
Sbjct: 620  AHGAAYLLHDRLHACSDYHVADVCVSCGSLL-APLRKPAANADVTSNLMLGGGGGEGGGK 678

Query: 1087 VTCHAC--QTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
              C  C   +S  +E VA+PYVFR+LAAELAAMNIK+ L++
Sbjct: 679  TVCPVCCPGSSATIERVALPYVFRFLAAELAAMNIKMELEI 719


>gi|327265571|ref|XP_003217581.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like, partial
            [Anolis carolinensis]
          Length = 692

 Score =  662 bits (1707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/736 (49%), Positives = 460/736 (62%), Gaps = 52/736 (7%)

Query: 396  GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTP 455
            GL + Q +G +V A++LNF+R++S FR VHRGA F  +RTT+VRKLLPESWGFLCPVHTP
Sbjct: 2    GLGMLQTSGLSVMADKLNFVRYLSHFRCVHRGADFIKMRTTTVRKLLPESWGFLCPVHTP 61

Query: 456  DGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS--LPKLVKSGP 513
            DGEPCGL+NH+T+ C + +           S   TS+  +L  +G+ P+  +P    S  
Sbjct: 62   DGEPCGLMNHLTAPCEIVTQ----------SLFTTSLPSLLCSLGVTPTDGVPNQPYS-- 109

Query: 514  PAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGA-YPGL 572
                 V LDG +VG I       +V  LR  K      IP   EV  +P++   + YPGL
Sbjct: 110  -ECYPVTLDGSLVGWIEKDLAPGLVETLRHCKAMQEKKIPVWTEVVLIPMTGKPSLYPGL 168

Query: 573  YLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEI 632
            ++FT+P + +RPVRN++L  EE      IG  EQVFM I   +            TH+E+
Sbjct: 169  FIFTTPCRMMRPVRNLALGKEE-----WIGTMEQVFMNIAVLEN----EIELGLTTHQEL 219

Query: 633  HPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPI 692
             P  MLSVVAN  P+SDHNQSPRNMYQCQM KQTMGF +    +R D KLY LQTPQ+P+
Sbjct: 220  FPHSMLSVVANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTFPYRTDDKLYRLQTPQSPL 279

Query: 693  VRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDL 752
            VR   Y  Y +D YP GTNAIVAV++Y+GYDMEDAMILNKSS +RG  HG IY+TE IDL
Sbjct: 280  VRPAMYDHYDMDSYPIGTNAIVAVISYSGYDMEDAMILNKSSWERGFAHGSIYKTERIDL 339

Query: 753  SDDGNKVDRGQK--LFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRT 810
            ++   K+ +G+   +F    D  +    +D+DGLP +G  +  G+PY S  +  T     
Sbjct: 340  TE---KIKQGEDNLVFGIGPDRAATLKNLDADGLPPIGSRLQYGDPYYSYLNLNTGESFV 396

Query: 811  NSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQLWP 869
               K  E   VD + V   ++ +   K   I  R  RNP IGDKF+SRHGQKG+ S+LWP
Sbjct: 397  TYHKNKEVCVVDNIKVCSNDTGSGQFKCVCITLRVPRNPTIGDKFASRHGQKGILSRLWP 456

Query: 870  DIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKT 929
              DMPF+  +GM PD++ NPH FPSRMTI ML+ES+A K  SLHG   DATPF  S    
Sbjct: 457  AEDMPFTE-SGMMPDILFNPHGFPSRMTIGMLIESMAGKSASLHGLCHDATPFTFS---- 511

Query: 930  NGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMV 989
                   E  S V+  G+ML+  G+NY+G E +YSGV G EL  +IFIG VYYQRLRHMV
Sbjct: 512  -------EENSAVEYFGKMLKAGGYNYYGTERMYSGVSGVELEADIFIGVVYYQRLRHMV 564

Query: 990  SDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHV 1049
            SDKFQVR+TG  D++T QPI GR   GGIRFGEMERD+LLAHG ++LLHDRL  CSD  V
Sbjct: 565  SDKFQVRTTGARDKVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSV 624

Query: 1050 ADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRY 1109
            A VC  CGS+L+     P   +   I         ++  C  C  +  +ETVA+PYVFR 
Sbjct: 625  AHVCVQCGSLLSPLLKPPPVWSATRI---------RQHICTICNRNDTVETVAVPYVFRC 675

Query: 1110 LAAELAAMNIKITLQL 1125
              AELAA+NIK+ L +
Sbjct: 676  FVAELAAINIKVKLAV 691


>gi|407924585|gb|EKG17618.1| DNA-directed RNA polymerase subunit 2 domain 6 [Macrophomina
           phaseolina MS6]
          Length = 823

 Score =  659 bits (1699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/853 (42%), Positives = 521/853 (61%), Gaps = 68/853 (7%)

Query: 79  KTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDR 138
           ++ +CHL+G    +LV+ KEE  E+GGYF++NG+E++ R +I+ K+N+PM+++R SF++R
Sbjct: 6   QSNKCHLEGMTPAELVNAKEETEELGGYFVVNGIEKLIRMLIVGKRNFPMAIIRPSFQNR 65

Query: 139 REGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTND 198
            + YT   + IR VR DQ+S T  L+YL +G+V   F  +  EYL+PV ++LKALV+TND
Sbjct: 66  GQSYTKFGIQIRSVRPDQTSQTNVLHYLSDGNVTFRFSWRKNEYLVPVMMILKALVETND 125

Query: 199 LEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV 258
            EIF  L           KG      V++RV+++L   +   + ++ +   ++G  F+ V
Sbjct: 126 REIFEGLVGA-----AGSKGLADKQFVTDRVELLLRTYKVYGIHSKAKTRAYLGSKFKVV 180

Query: 259 I---DGLQSESYYAVAETVIRDYIFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTS 308
           +   D +  E   A AE  +R  +  HL  ++       DKF +L+FM++KL+SLV+   
Sbjct: 181 LGVPDDMPDED--AGAE-FLRRIVLPHLGSSDVTESQDIDKFKMLLFMIKKLYSLVEGEC 237

Query: 309 VSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFD--FFNLANI 366
             DNPD++QNQEILL G L  + LKEK+EDWL   + L  +   N   +F    F    +
Sbjct: 238 TVDNPDAVQNQEILLGGFLYGMILKEKIEDWLMSIRALASEWCRNTQHRFTDPEFEKDFL 297

Query: 367 KKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHR 426
            +++ +  ++ +G ++E  L TG L + +GLDLQQ +GYTV AE++NF RFIS FR VHR
Sbjct: 298 GRIVRRT-NENLGNAMEYFLSTGNLVSSSGLDLQQTSGYTVVAEKINFYRFISHFRMVHR 356

Query: 427 GASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFS 486
           G+ FA L+TT+VRKLLPESWGFLCPVHTPDG PCGLLNH+   C++A+         D  
Sbjct: 357 GSFFAELKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLAHKCKIAT--------SDVD 408

Query: 487 KMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKV 546
                 L   +G+  + S   L++      + V LDGR++G     + + +   LR  KV
Sbjct: 409 SSAIPGLVAQLGISNVSS--ALLEDS----VVVQLDGRILGFCSLKQAKVISDTLRYWKV 462

Query: 547 SAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQ 606
                +P +LE+GY+P+S GG YPG+Y+FT   +  RPV+ + L       ++ +GPFEQ
Sbjct: 463 EGTHNVPRELEIGYIPMSNGGQYPGVYMFTQSARLYRPVKYLPL-----DGLDYVGPFEQ 517

Query: 607 VFMEIRC--PDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAK 664
            +M I C  P+   G       +TH E  PT +LS+VAN TP+SD NQSPRNMYQCQM K
Sbjct: 518 PYMTIACTEPEIVSG------ESTHVEYDPTNILSIVANQTPFSDFNQSPRNMYQCQMGK 571

Query: 665 QTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDM 724
           Q+MG    A  +R D K Y LQT QTP+VR   + +YG+D +P G NA+VAV++YTGYDM
Sbjct: 572 QSMGTPGTATAYRTDNKSYRLQTGQTPVVRAPLHNEYGLDNFPNGMNAVVAVISYTGYDM 631

Query: 725 EDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV---DRGQKLFRRNKDA---KSLHSV 778
           +DA I+NKS+ +RG  HG IY+T+ ++L +DG++     R  KLF    D          
Sbjct: 632 DDAFIMNKSAHERGFGHGTIYKTKKVEL-NDGSRTKGSKRVTKLFGFAPDGIVKADWRLK 690

Query: 779 IDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRT-----------NSRKGSESVFVDYVAVD 827
           +D DGLP+VG M+  G+  C+ +  T ++ +               K  E  F++ V + 
Sbjct: 691 LDDDGLPHVGTMMQKGDILCAYHTVTYDASKQEYVNKDGQTSFEKYKDDEVGFIEEVRII 750

Query: 828 MKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLI 886
             ++   P Q  +I+ R  R+P+IGDKFSSRHGQKGV SQ WP IDMPFS  +GM+PD+I
Sbjct: 751 GSDTGAEPLQAVSIKIRVPRSPVIGDKFSSRHGQKGVMSQKWPCIDMPFSE-SGMQPDII 809

Query: 887 INPHAFPSRMTIA 899
           INPHAFPSRMTI 
Sbjct: 810 INPHAFPSRMTIG 822


>gi|449019344|dbj|BAM82746.1| RNA polymerase I second largest subunit [Cyanidioschyzon merolae
            strain 10D]
          Length = 1175

 Score =  655 bits (1691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/1079 (37%), Positives = 606/1079 (56%), Gaps = 93/1079 (8%)

Query: 64   VVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPK 123
            V R   + G+ P+++ ++ CHL G    + V+L EE  + GGYFI+NG+E++ R VI+P+
Sbjct: 168  VYRSERHLGEVPILVGSKLCHLDGLSPNERVALHEEEYDYGGYFIVNGVEKLLRMVIMPR 227

Query: 124  QNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSV-TLKLYYLLNGSVRLGFWLQGKEY 182
             N+ M + R +   R E +T  + +IRC R D+  V T  L+YL  G +RL F ++ +EY
Sbjct: 228  ANHVMVIARDANVRRGEHFTRFSAMIRCRRADRVRVVTNHLHYLQTGLLRLRFSVKRQEY 287

Query: 183  LLPVGIVLKALVDTNDLEIFNHLT----CC---YDEKYKKEKGAVGSPLVSERVKIILAE 235
            LLP+G+VLKAL D  D E+F  LT    CC    DE  +          + ER  + + E
Sbjct: 288  LLPLGLVLKALYDLADRELFLLLTMPSGCCGTNADENLR---------YIRERALMTVRE 338

Query: 236  VQDLS--LTTRLQCLQHIGEHFQPVIDGLQS--ESYYAVAETVIRDYIFVHLNDNNDKFN 291
            +  L+    T+   L ++G  F+ +     S  +S       ++R Y+ +HL+D   K  
Sbjct: 339  LHVLTGGEGTQHAALSYLGARFRCLFPEYLSSDDSDERCGAFILRRYVLIHLDDPLQKLE 398

Query: 292  LLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEI 351
            LL +M +KL   +      D+PDSL NQE+LLPG L  ++L+EKL+D L   +  I  ++
Sbjct: 399  LLAYMSRKLLHYMTGCLAEDDPDSLANQELLLPGQLWLLFLQEKLQDALFALRDEISRQL 458

Query: 352  ENNGKKFDFFNLANIKKVMEKNPSK-QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAE 410
                 +    +   ++K + K  S  ++G  +  +L TG  + + G +L Q +GY++ A+
Sbjct: 459  TQRANQGSLLDPDFVRKCVSKPRSGIRVGERMLHLLSTGTASLRDGAELLQTSGYSIIAD 518

Query: 411  RLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTC 470
            R+NF RF+S F +VHRG  F  LRT+  RKL PE+WGF+CPVHTPDG PCG+LNH+T  C
Sbjct: 519  RINFQRFLSHFYSVHRGQYFLNLRTSESRKLKPETWGFICPVHTPDGAPCGILNHLTRMC 578

Query: 471  RVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPA-VLSVLLDGRVVGVI 529
            RV +  D +  +++  ++   IL  L     +     L+   PPA    VL+DGR+ G +
Sbjct: 579  RVVA--DQQQVLQEQKRIEW-ILETLPLEHPLAHNDALLM--PPANARPVLVDGRIRGYV 633

Query: 530  PSS-EIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNI 588
                 + K++   +        ++  D+E+  +       +P + +F++P + +R V N+
Sbjct: 634  HGDVPLGKLLRQQKLEHFPQTEIV--DVEIPRL-------FPSVMVFSTPSRLMRSVWNM 684

Query: 589  SLPSEESQNIELIGPFEQVFMEIR-CPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPY 647
                     IE IG  EQ+FM +  C         NA  A H E+  T + S++A+  P+
Sbjct: 685  P-----QAGIEWIGTMEQLFMPVDLCKSQSMSRAGNA--AIHRELSATNIFSLLASFIPF 737

Query: 648  SDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDE-Y 706
            S+ NQSPRN+YQCQM KQ MG        R D K Y L TPQ P+V+  +  + G  + +
Sbjct: 738  SNMNQSPRNIYQCQMGKQAMGVPFHDWDRRFDTKSYRLLTPQQPLVQNRSEAQAGWSKVF 797

Query: 707  PTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLF 766
             +  NA+VAV++YTGYDMED M++N++S+DRG+ HG IY  E +DL  D   V +  +  
Sbjct: 798  GSSFNAVVAVISYTGYDMEDGMVINRASLDRGLAHGAIYGCEFVDL--DQLNVAKDARFS 855

Query: 767  RRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAV 826
            R                LP VG+ + PG    SI  +  + +R      SE+ +VD V +
Sbjct: 856  R----------------LPAVGERMTPGSVLYSIQGRRPHLYRN-----SETSYVDAVLL 894

Query: 827  DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLI 886
              +N +    +  IR R  R P+IGDKF+SRHGQKGV S +WP  DMP++   G+ PD++
Sbjct: 895  -AENQR----RVAIRTRTPRRPVIGDKFASRHGQKGVLSAIWPAEDMPYTS-DGIVPDIL 948

Query: 887  INPHAFPSRMTIAMLLESVAAKGGSLHGKF-MDATPFANSVKKTNGDTGTDESKSLVDEL 945
             NP+ FPSRMTI M++ES+A K  ++HG   +DA+ F    ++   D     ++   D  
Sbjct: 949  FNPNGFPSRMTIGMIVESIAGKAAAVHGAVPIDASAF----ERETEDASDRSNEPPHDFF 1004

Query: 946  GEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQIT 1005
            G +L   G+ YHG E +Y+G  G     +IFIG + +QRLRH ++DKFQVR+ G + Q  
Sbjct: 1005 GRLLLNTGYTYHGTETMYNGYTGEPFVVQIFIGVIAWQRLRHHIADKFQVRTEGIVHQTL 1064

Query: 1006 RQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFI 1065
            RQP++GRKRGG IR GEMERD+LLA GAAY L DRL +CSD H   V +L GS+L A   
Sbjct: 1065 RQPLRGRKRGGAIRLGEMERDALLASGAAYTLQDRLQSCSDLHTVYVSALDGSLL-APIA 1123

Query: 1066 HPQKRAIREIGGLPPARAPKKVTCHA-CQTSKGMETVAMPYVFRYLAAELAAMNIKITL 1123
             P +R    +G      A  +++  +   T   +  V MPY F+YL  ELAAMNI+++L
Sbjct: 1124 APNER----LG------ATSRISVKSRTNTRSPVVRVHMPYAFKYLVYELAAMNIRVSL 1172


>gi|156361325|ref|XP_001625468.1| predicted protein [Nematostella vectensis]
 gi|156212303|gb|EDO33368.1| predicted protein [Nematostella vectensis]
          Length = 913

 Score =  652 bits (1681), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/945 (39%), Positives = 530/945 (56%), Gaps = 123/945 (13%)

Query: 10  EPLRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERF 69
           + +++LVR HIESF++ML+EGL  +   CR+   +Y  KL   ++++  +     V +  
Sbjct: 32  QSIQDLVRPHIESFNFMLEEGLP-LAAQCREKGSTYCSKLQVTLQWKIDNVPQGSVTKVI 90

Query: 70  NFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMS 129
                P+M+K+  C L     ++LV   EE+ E GGYFI+NG+E++ R +ILP++NYP++
Sbjct: 91  --AAIPLMVKSNNCSLANLSPKELVRKNEESQEAGGYFIVNGIEKIIRMLILPRRNYPLA 148

Query: 130 MVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIV 189
           ++R S++ R   YT+  V +R V+ DQS+V + L+YL +G+V +    + + Y +PV  +
Sbjct: 149 IIRPSWKGRGSFYTEYGVQMRSVKGDQSAVNMTLHYLNDGNVMMCIAYRKELYYVPVVFI 208

Query: 190 LKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQ 249
           LKAL++  D  I+  L           K    +    + V ++L   Q+     +   L+
Sbjct: 209 LKALMNVTDQHIYRELI----------KAEENNTFWKDCVAMMLRTAQEEGAVNQKSVLE 258

Query: 250 HIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSV 309
           +IG  F+  +      S  AVA+ +I+  I +HL+ N DKFNLLI M +KL++L      
Sbjct: 259 YIGLRFRVKMRLPDWFSDEAVAQYLIQQCICIHLDTNADKFNLLILMTRKLYALALEKCC 318

Query: 310 SDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKV 369
           +++ DS  NQE+LL GHL  + LK                                    
Sbjct: 319 AESADSPMNQEVLLGGHLYLMVLK------------------------------------ 342

Query: 370 MEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGAS 429
                       +E  L TG L +++GL LQQ +G+TV A+RLN+ RF+S FR +HRGA 
Sbjct: 343 ------------MEYFLATGNLISKSGLALQQISGFTVVADRLNYFRFLSHFRCIHRGAF 390

Query: 430 FAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMR 489
           F+ +RTTSVRKLLPE+WGFLCPVHTPDG PCGLLNH+ + C+V           +   + 
Sbjct: 391 FSQMRTTSVRKLLPEAWGFLCPVHTPDGAPCGLLNHLAAGCQVV----------NVVPLV 440

Query: 490 TSILRVLIGVGMIP---SLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKV 546
             +LR+L  +GMIP    +P   K+  P    V++DGRV+G +       +   LR +KV
Sbjct: 441 AHMLRLLCTMGMIPVDAPVPGDYKNYYP----VVMDGRVLGSVDRDLAPTLANRLRIMKV 496

Query: 547 SAASVIPDDLEVGYVPLS-LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFE 605
                +P  LE+  VP++ +   YPGL++F+SP + +RPV N+++       IE+IG FE
Sbjct: 497 LGEERVPQFLEICLVPITKVASQYPGLFIFSSPARMMRPVLNLAV-----NKIEMIGSFE 551

Query: 606 QVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQ 665
           QV+M+I           +    TH E+ PT MLS +A++TPYSD NQSPRNMYQCQM KQ
Sbjct: 552 QVYMDIAIVQE----ELHEGVTTHMELKPTAMLSAIASMTPYSDFNQSPRNMYQCQMGKQ 607

Query: 666 TMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDME 725
           TMG  V A + R D KLY +QTPQ+P+VR  ++  Y +DEYP GTNAIVAV++YTGYDME
Sbjct: 608 TMGTPVHAFQHRTDNKLYRIQTPQSPLVRPASHDFYIMDEYPLGTNAIVAVISYTGYDME 667

Query: 726 DAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKL-FRRNKDAKSLHSVIDSDGL 784
           DAM+LNK+S +RG  HG IY+ + ++L            L F    D   +   +D+DG 
Sbjct: 668 DAMVLNKASYERGFAHGSIYKAQFVNLEPKSQDRTSSSNLQFGTLPDDPRIDGRLDADGF 727

Query: 785 PYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRH 844
           P +G  +  G+PY S  D  T           E+  +D                      
Sbjct: 728 PPLGAHLSTGDPYYSYIDTNTGEAVVKKYSNLEAGIID---------------------- 765

Query: 845 TRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLES 904
            RNPIIGDKFSSRHGQKG+CSQ WP  +MPFS  +GM PD+I NPH FPSRMTI M++ES
Sbjct: 766 DRNPIIGDKFSSRHGQKGICSQKWPVENMPFSE-SGMTPDIIFNPHGFPSRMTIGMMIES 824

Query: 905 VAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEML 949
           +A K  +L+G   DATPF  S           E  S +D  G++L
Sbjct: 825 MAGKSAALNGHVYDATPFTFS-----------EDDSAIDYFGKLL 858


>gi|429329474|gb|AFZ81233.1| DNA-directed RNA polymerase subunit beta, putative [Babesia equi]
          Length = 1270

 Score =  648 bits (1672), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/1214 (34%), Positives = 616/1214 (50%), Gaps = 156/1214 (12%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
            H + +  +Y   L+     ++ D  S V +E    G  PVM+K++RC+L G   +++V  
Sbjct: 89   HAKTSHTTYEAPLVVTFGIKFSDTESIVTKELI-VGHIPVMVKSKRCNLSGLTPEEMVQQ 147

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
             E+  E GGYFI+ G+E++ R VI+ + NYP+++   +   R   +TD ++V+RC   D 
Sbjct: 148  GEDIDEPGGYFIIRGVEKIIRQVIITRSNYPIAIKSENNSLRNVLFTDYSIVMRCQSHDD 207

Query: 157  SS-VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVD-TNDLEIFNHL--TCCYDEK 212
               VT  LY  +N        ++    L+P+ ++L+ALV   +D E+   L      DE+
Sbjct: 208  GCYVTNVLYLTINKRCMFRVLIKNSVVLIPLTLLLRALVPYMSDDELKQKLLQNTIGDEE 267

Query: 213  YKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQ-----CLQHIGEHFQPVIDGLQSESY 267
                       ++  R   IL+++ D +    L      C   I ++  P        ++
Sbjct: 268  MTTYYHQFFLDMI--RCDPILSDI-DFTENRYLYRLGKVCWSRINQYLHP------GATF 318

Query: 268  YAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
               A   ++ ++ +H + N +KF  L+FM  KL  L      S++ DS   QEILLPG  
Sbjct: 319  EECAVYFLKYFVIIHAHTNVEKFETLLFMFNKLIKLSRGEIQSESYDSFAFQEILLPGQT 378

Query: 328  ITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIK-KVMEKNPSKQIGTSIETML 386
             +  LKE L   L + KK+   EI   G+       A  K K M+   ++   T I+ +L
Sbjct: 379  YSCILKESLYLALTRIKKIYSTEISYFGRYLQGDVSARSKRKFMDFGENQDSSTLIKQLL 438

Query: 387  KTGRL------------------------ATQTGLDLQQRAGYTVQAERLNFLRFISFFR 422
             +  L                        A  +  +L Q AG+ V A+R+N+ RF S FR
Sbjct: 439  SSVALFNYATDKIAPLISKRLLYFLSSGNALNSHFELNQSAGFVVVADRINYHRFASHFR 498

Query: 423  AVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNI 482
            ++HRG  F  +R+T VR+LL E+WGF+CPVHTPDG PCGLL H++    + +  D + + 
Sbjct: 499  SIHRGNIFTKMRSTEVRRLLGETWGFICPVHTPDGAPCGLLLHISQYAVLVT--DPKCD- 555

Query: 483  RDFSKMRTSILRV-----LIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKV 537
               S+++  +  +     L G  +I +            + +L+DG  +  IPSS+   V
Sbjct: 556  DSISRVKQCLKHLGYCVDLCGNTLITNY--FTSKDEKHYIPILVDGIPICTIPSSDSMNV 613

Query: 538  VAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN 597
               LR+ K++    +    E+  +P S    Y  + + T P + +RPVR +     ++ N
Sbjct: 614  YNQLRQAKLNGNFGMKQHYEIIALPDS-KTTYSNISVMTYPGRMIRPVRCV-----KTGN 667

Query: 598  IELIGPFEQVFMEI--------------------------------------RCPDGGDG 619
            +E IGP  Q++  I                                       C    D 
Sbjct: 668  VEWIGPITQLWSTIAVSEYELSLSHSILESENVNKPHIAPSISETLSLHRNKECNTNVDK 727

Query: 620  GRRNAFPATHE--EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFR 677
               NA P ++E  E+ P+G+LSV+A LTP+S+HNQSPRNMYQCQM KQ+MG       +R
Sbjct: 728  FLENA-PVSYEFVELKPSGILSVIAALTPFSNHNQSPRNMYQCQMLKQSMGVPYHCETYR 786

Query: 678  ADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDR 737
            +D K Y L TPQ P+V T  Y K G D+Y TG NAIVAV+A++G+DMEDAMILNK+S+DR
Sbjct: 787  SDNKSYRLITPQKPLVTTEEYRKMGYDDYSTGINAIVAVIAHSGFDMEDAMILNKASLDR 846

Query: 738  GMCHGQIYQTETID-LSDDGNKVDRGQKLFRRNKDAKSL-HSVIDSDGLPYVGQMIHPGE 795
            G  HG IY+T+ ID +       D     F    DA +L    +D DGLP VGQ +  G 
Sbjct: 847  GAFHGCIYKTKIIDAMPPSAVNKDSHSYYFNNINDAGNLIIKHLDKDGLPSVGQKVKKGM 906

Query: 796  PYCSIYDKTTN------SWRTNSRKGSESVFVDYVAVDMKNSKNLPQ--------KANIR 841
             +C +  +         + R       E V      V   +S             +  I+
Sbjct: 907  IFCRVEARERQNGEIHITERLEKYDDEEGVIDQVTLVGFSDSSADKSSSSGIKCTRVVIK 966

Query: 842  FRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAML 901
             R  RNP++GDKF+SRHGQKG+ S  WP  DMPF   +G+ PD+I NPH  PSRMT+  L
Sbjct: 967  LRIVRNPVVGDKFASRHGQKGILSMTWPVEDMPFLE-SGIVPDIIFNPHGLPSRMTVGKL 1025

Query: 902  LESVAAKGGSLHGKFMDATPFANSVKKT---------NGDTGTDE--------------- 937
            +E +A K  ++HG+F DAT F    K++         NG  G +E               
Sbjct: 1026 IECMAGKSAAVHGQFQDATCFRKYPKQSKFNNRWIDQNGIKGWNERGQKYASDDEGDDTN 1085

Query: 938  SKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRS 997
               +VD  G+ L   G++Y+G E +Y G  GTE+   IF+G ++YQRLRHMV+DK QVR+
Sbjct: 1086 HDDVVDYFGKTLLMAGYDYYGTEAMYCGTLGTEIQAHIFVGCIFYQRLRHMVADKAQVRA 1145

Query: 998  TGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCG 1057
            TG +D IT+QP+KG+K  GGIRFGEMERD+L+AHG + LL DRL  CSD H A VC  CG
Sbjct: 1146 TGPIDTITKQPVKGKKNLGGIRFGEMERDALIAHGTSQLLQDRLMHCSDGHFAYVCPKCG 1205

Query: 1058 SVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSK-GMETVAMPYVFRYLAAELAA 1116
            S+++AT       ++    G        K+    C+  K G + V +PYV RY+A ELA 
Sbjct: 1206 SIISATI-----SSVNSNTG--------KIQISQCRICKVGCKLVMIPYVLRYVANELAT 1252

Query: 1117 MNIKITLQLGDGAT 1130
            MNI I L L    T
Sbjct: 1253 MNIGIKLHLSQLGT 1266


>gi|303388613|ref|XP_003072540.1| DNA-directed RNA polymerase subunit B [Encephalitozoon intestinalis
            ATCC 50506]
 gi|303301681|gb|ADM11180.1| DNA-directed RNA polymerase subunit B [Encephalitozoon intestinalis
            ATCC 50506]
          Length = 1047

 Score =  639 bits (1649), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 402/1106 (36%), Positives = 580/1106 (52%), Gaps = 145/1106 (13%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR+  ++Y GK++  +          ++ E    G FP+M+++  CHL+ A +   V   
Sbjct: 69   CRERGLTYKGKII--IRISLFHDNKHIMTEDKLAGYFPIMVRSSLCHLRNAKNMNKVG-- 124

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            E+  E+GGYFI+NG ++  R  I  K+N+  +      R R   +T   V +RCV KD+ 
Sbjct: 125  EDEDEVGGYFIINGFDKFIRFTITQKRNHIFAF---KTRKRESFFTGYGVSMRCVGKDEI 181

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
                 LYY  +G+V L  + +  E+  P+ ++L+ALV+T D E++               
Sbjct: 182  GHMNNLYYCTDGNVVLKMYYRRSEFFFPLVLILRALVNTTDEELYE-------------- 227

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
             A+G     ER   +L    + ++ +R +CL +IG  F  + +     S   VAE ++  
Sbjct: 228  -ALGQ---GERAIHLLKCFAEYNVFSRKECLDYIGSRFSSMAN---FGSKIEVAEEILSK 280

Query: 278  YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
            YI  HL+ + DKFN LI   +KLFS V++    ++ DS  N E+     +++  L++K+E
Sbjct: 281  YIASHLSSHLDKFNFLILAAKKLFSFVNNEIAEEDFDSSGNHELHTTTQILSSLLRDKIE 340

Query: 338  DWLRK-----GKKLIQDEIEN------------NGKKFDFFNLANIKKVMEKNPSKQIGT 380
            +++R       K  ++ E E             +G   D  ++  IK++ +K     IG 
Sbjct: 341  EFMRSLPIAYKKAYLKSEGEKRRLEEDSDSEVVDGIYEDKLDILKIKEIFKK-AVMNIGQ 399

Query: 381  SIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRK 440
             +E  L +G +      D+ Q  G ++  ER NF R+    R+++RG     L  T +RK
Sbjct: 400  KVELFLSSGNIFLSCCSDILQTTGLSITLERTNFYRYFGNLRSINRGTHIPSL-VTRIRK 458

Query: 441  LLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVG 500
            L PESWGF+CPVHTPDG  CG+L HM     + S    R N  DF         +L  +G
Sbjct: 459  LRPESWGFICPVHTPDGACCGVLLHMAKGADIVS----RAN--DFDT------EILFELG 506

Query: 501  MIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGY 560
            ++P++  +    P     VL+DG+V+G   S +   +V  LR  KV       + L++  
Sbjct: 507  VVPTIRGVRMEVP-----VLVDGKVIGSTSSPQF--LVRMLREYKVK------NRLKIEI 553

Query: 561  VPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDG-GDG 619
            V       +  + +F+S  +F+R V N  L SEE      +G  EQV + I    G GD 
Sbjct: 554  VYSEGTKVFSSVCIFSSMGRFIRKVMNQRLGSEE-----WVGIMEQVSLNIDLERGEGD- 607

Query: 620  GRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRAD 679
                     + EI  + +L ++A LTPYS+HNQSPRNMYQCQMAKQ MGFS   +K R D
Sbjct: 608  ---------YHEIDKSNILGIIAGLTPYSEHNQSPRNMYQCQMAKQAMGFSAYNMKTRID 658

Query: 680  QKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGM 739
              +Y++   Q+P+VRT  Y    + +YP G N +VAVL+YT YDMEDA+++NKSS++RG+
Sbjct: 659  HTMYNINYLQSPLVRTKGYDM--VKDYPLGINCMVAVLSYTAYDMEDALVINKSSIERGL 716

Query: 740  CHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCS 799
              G IY+TE I L                NK    L+       LP VG+ I        
Sbjct: 717  FTGLIYKTERIVL----------------NKGYSFLY-------LPSVGEKIQKDSILYK 753

Query: 800  IYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHG 859
              D     ++T   +  + V +D V V   ++    + A +  R  RNP IGDKFSSRHG
Sbjct: 754  YVDLEDREYQTRYLETEDGV-IDSVRVFESDAGE--RCALLTIRMVRNPTIGDKFSSRHG 810

Query: 860  QKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDA 919
            QKGVCS  WP IDMPF+  +G  PD+IINPHAFPSRMTI ML+ES+A K G L G   D 
Sbjct: 811  QKGVCSVHWPSIDMPFTE-SGYVPDIIINPHAFPSRMTIGMLMESIAGKVGCLSGNTQDG 869

Query: 920  TPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGP 979
            T F  ++ +   +      + +  EL    +  GFNY+G E +YSGV G E   ++F+G 
Sbjct: 870  TAFEKNLSQGEDEETVGRKEYICSEL----QKYGFNYYGNEPMYSGVSGNEFRVDVFVGV 925

Query: 980  VYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHD 1039
            VYYQRL+HMV DKFQVR+ G +   TRQP+ GRKR GGIRFGEMERD+L++HGA++LL D
Sbjct: 926  VYYQRLKHMVGDKFQVRTKGAIVSTTRQPVGGRKRQGGIRFGEMERDTLISHGASHLLQD 985

Query: 1040 RLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGME 1099
            RL  CSD    + C  C S+L  +                         C     S  + 
Sbjct: 986  RLLKCSDGTTFEYCGACKSILFTS--------------------SGDCIC----GSSDIR 1021

Query: 1100 TVAMPYVFRYLAAELAAMNIKITLQL 1125
             V MPYVF+YL  EL AMNI++ L L
Sbjct: 1022 IVEMPYVFKYLCYELLAMNIRVKLDL 1047


>gi|156084478|ref|XP_001609722.1| DNA-directed RNA polymerase, beta subunit [Babesia bovis T2Bo]
 gi|154796974|gb|EDO06154.1| DNA-directed RNA polymerase, beta subunit, putative [Babesia bovis]
          Length = 1283

 Score =  638 bits (1645), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 416/1213 (34%), Positives = 619/1213 (51%), Gaps = 163/1213 (13%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
            H + A  +Y   L+     + +   S V+ +    G  P+M+K++RC+L G   +++V  
Sbjct: 101  HAKIAHTTYESSLIVKFGLK-IPGTSKVLTKELTVGYIPIMVKSKRCNLDGISPEEMVEQ 159

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC-VRKD 155
             E+  E GGYF++ G ER+ R +I+ + NYP+++   + R +   +TD ++++R     D
Sbjct: 160  GEDIDEPGGYFVVRGNERIVRQLIVLRSNYPLAIKSGNNRTKHVLFTDYSIMMRSQCHDD 219

Query: 156  QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVD-TNDLEIFNHL--TCCYDEK 212
              SV   LY  +N        ++G   L+P G++L+A +   +D E+   L      DE 
Sbjct: 220  GCSVNNVLYLTVNKRCMFRTIVKGSVQLIPFGVLLRATMPLMSDEELKQKLLQDTLGDEA 279

Query: 213  YKKEKGAVGSPLVSERVKIILAEVQDLSLTTRL--QCLQHIGEHFQPVIDGLQSESYYAV 270
                       LV     I   ++++     RL   C   + ++  P        +Y   
Sbjct: 280  LTVYYQRFFLDLVEREPDICDIDLKENRHLYRLGSACWSQVNQYLHP------GATYEEC 333

Query: 271  AETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITI 330
                +R Y+ +    N +KF  L++M +KL  +      ++N DS   QE+LLPG + + 
Sbjct: 334  GAYFLRHYVLLQAKTNAEKFETLLYMFKKLIKVSRGEIQTENYDSFAFQELLLPGQIYSC 393

Query: 331  YLKEKL------------EDWLRKGKKLIQDEIENNGKKFDFFNLAN------------- 365
             LKE L             + L   K +  D   ++ ++    +L +             
Sbjct: 394  ILKESLYVALLKIRSIYHAELLELCKNISGDATRHSKRRLIDVDLQSHEQKELLEKLLEK 453

Query: 366  -------IKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFI 418
                   ++KV    P K     + + L TG  AT    +L Q +G TV AER+N+ RF+
Sbjct: 454  PELFSYAVEKVASDIPKK-----LHSFLATGN-ATNMHFELTQSSGLTVVAERINYHRFM 507

Query: 419  SFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDS 478
            S FR++HRG+ FA +R+T VRKLL E+WGF+CPVHTPDG PCGLL H+       +  D 
Sbjct: 508  SHFRSLHRGSLFAKMRSTEVRKLLGETWGFICPVHTPDGAPCGLLLHLAQYAVPVTATDC 567

Query: 479  RGNIRDFSKMRTSILRV---LIGVGMIPSLPKLVKSGPPAV--LSVLLDGRVVGVIPSSE 533
             G     ++   S+LR     +      ++   V      +  + V++DG  +  +P +E
Sbjct: 568  EGA----AEAVKSLLRTHGYSVDFTGHETVTDFVTHDAQHIKRIHVIVDGVPMCTLPINE 623

Query: 534  IEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSE 593
              K+   ++  K      + +  E+   P  + G Y  + + T P + +RPV  I L S 
Sbjct: 624  APKLYDEIKLAKRYGKFGLKEHYEIVASP-DVKGEYTSIMILTYPGRVIRPV--ICLTSG 680

Query: 594  ESQNIELIGPFEQVFMEIRCPD------------GGDGGRR------------------- 622
            E   IE IGP  Q++  I   +              +G  +                   
Sbjct: 681  E---IEWIGPITQLWSTIAVSEEEARISHQMVASNAEGKCKTLSIDEALMHDNSSDHAVS 737

Query: 623  ------NAFPATHE--EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQAL 674
                  +  P  ++  E+ P+ +LSV A LTP+S+HNQSPRNMYQCQM KQ+MG      
Sbjct: 738  PVKKVIDNVPVKYDYMEVSPSAILSVTAALTPFSNHNQSPRNMYQCQMLKQSMGVPYHCE 797

Query: 675  KFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSS 734
            +FR+D K Y L  PQ P+V T  + +   ++YPTG NA+VAV+A+TG+DMEDAMI+NKSS
Sbjct: 798  QFRSDVKAYRLLFPQKPLVTTTEFRQMNYEDYPTGMNAVVAVIAHTGFDMEDAMIINKSS 857

Query: 735  VDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKD--AKSLHSVIDSDGLPYVGQMIH 792
            +DRG  HG IY+++ ID +   N   RG + +  N +     + + +D DGLP VG  + 
Sbjct: 858  LDRGAFHGCIYKSKVID-AMPANGRSRGNQHYFANTNHLGSKIIASLDKDGLPNVGARVK 916

Query: 793  PGEPYCSI--YDKTTNSWRTNSR---KGSESVFVDYVAV---------DMKNSKNLP-QK 837
             G P C I  ++K   S + + R      E   VD V +         +M N+ N+   +
Sbjct: 917  KGTPICRIESHEKVGGSKQISDRVEKYHDEDAIVDQVTIIGCNDASVAEMPNASNIKGTR 976

Query: 838  ANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMT 897
            A I+FR  RNPI+GDKF+SRHGQKG+ S  WP  +MPF   +G+ PD+I NPH  PSRMT
Sbjct: 977  ATIKFRIVRNPIVGDKFASRHGQKGILSMAWPAENMPFLE-SGIIPDIIFNPHGLPSRMT 1035

Query: 898  IAMLLESVAAKGGSLHGKFMDATPF---------ANSVKKTNGDTGTDE----------- 937
            I  L+E +A K  ++HG F DAT F          N      G  G +E           
Sbjct: 1036 IGKLIECMAGKSAAIHGAFQDATCFRKYPKQMATGNKWIDHGGLKGWEERGFRYMSKEEE 1095

Query: 938  -SKS---LVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKF 993
             SK+   ++D  G+ L   G++Y+G E +Y G  GTE+   IFIG ++YQRLRHMVSDK 
Sbjct: 1096 LSKTEDDVIDYFGKTLLQAGYDYYGTESMYCGSLGTEIRTHIFIGCIFYQRLRHMVSDKA 1155

Query: 994  QVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVC 1053
            QVR+TG +D IT+QP+KGRK  GGIRFGEMERDSL+AHGA+ LL DRL  CSD H A VC
Sbjct: 1156 QVRATGPVDAITKQPVKGRKNRGGIRFGEMERDSLIAHGASALLQDRLIHCSDAHTAYVC 1215

Query: 1054 SLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSK-GMETVAMPYVFRYLAA 1112
              CGS+++AT        +  +G      A  K +   C+  K   + V +PYV RY+A 
Sbjct: 1216 PNCGSIISAT--------VTSVG------ATNKRSVSHCRICKVACKLVTIPYVLRYVAH 1261

Query: 1113 ELAAMNIKITLQL 1125
            ELA++N+ I L L
Sbjct: 1262 ELASINVGIRLHL 1274


>gi|313212713|emb|CBY36648.1| unnamed protein product [Oikopleura dioica]
          Length = 1140

 Score =  637 bits (1644), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 375/1119 (33%), Positives = 586/1119 (52%), Gaps = 131/1119 (11%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CRQ K  YT  +        L +G   V  + +  Q P+M+ + +CHL+G   ++LV+ K
Sbjct: 109  CRQKKTDYTAPVHVTFNLINLSSGETQVVTKKDLLQMPLMVMSSKCHLRGLSPEELVARK 168

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            E+  E+GGYFI +G E+V R + + +    +  +   F                      
Sbjct: 169  EDHFEIGGYFIASGNEKVIRLLNMNRTRLVLDRLTELFV--------------------- 207

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
                             F++Q + + + +  V++AL    DLEI+        ++   + 
Sbjct: 208  -----------------FYIQKQLFHVSMMTVVRALTSWTDLEIYREFMQTMSDEPNYDS 250

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
                     +R+   L ++Q   LT      + +G+ F+        +S     +  ++ 
Sbjct: 251  AV-------KRMLKKLVKIQHHFLTQ----AKFLGQSFRIFDICPAWKSDVEAGQAFLKR 299

Query: 278  YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
            Y  ++LN++ DK      M +K F +  +T  +D+ DS ++ ++LLPGHL      E  E
Sbjct: 300  YCLIYLNNDEDKVRAFALMARKAFRISHNTCATDDIDSPESHDVLLPGHLFQSMTLEFFE 359

Query: 338  DWLRKGKKLI-----------QDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETML 386
             + R    ++            DE+  N   F    + N+ +              + ++
Sbjct: 360  SYQRSVSMIMAKEYSKQLEKGNDEVGQNMLSFAINKIGNMNQ------------HFKYLI 407

Query: 387  KTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESW 446
             TG L T  GL +QQ AG  V AE++NF RF S FR +HRGA F  +R TS RKL   +W
Sbjct: 408  ATGNLKTNDGLGMQQLAGIVVGAEKINFARFYSHFRCIHRGAFFMEMRATSPRKLSTAAW 467

Query: 447  GFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLP 506
            GF+CPVHTPDG PCGLLNH+  T R+    ++   + +          +L+ +G+ P   
Sbjct: 468  GFICPVHTPDGPPCGLLNHLAHTVRINVKRENTAKLEE----------LLLEIGVKPCSI 517

Query: 507  KLVKSGPPAVLSVLLDGRVVGVIPSS-EIEKVVAHLRRLKVSAASVIPDDLEVGYVPL-- 563
            K  +   P    V++DG+ +G I +    + V  +LRRLK S++  +PD LE+ + P   
Sbjct: 518  KANEFDIP----VIIDGKQIGWIANGWRAQAVEKYLRRLKTSSSDRVPDTLEIVHCPAPE 573

Query: 564  SLGGA--YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGR 621
            + G A  +PG+ L T P +  RP+ N+         IE+IG  EQV++ +         +
Sbjct: 574  NKGEAVMFPGINLLTEPARMYRPLLNL-----REDKIEMIGIMEQVWLHVTV-----NQK 623

Query: 622  RNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQK 681
             +     ++E++P  +LS +A ++P+S+ N   R + QCQMAKQT G+    L  R+D K
Sbjct: 624  ESHELTEYQELYPAALLSELACMSPFSNMNAGARVILQCQMAKQTFGWPSYTLNHRSDNK 683

Query: 682  LYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCH 741
            +Y + TPQ P+VR++ +  +G+D+YP GTN ++AV++YTGYD+EDA  ++K S +RGM +
Sbjct: 684  MYRILTPQEPLVRSHLHDSWGMDDYPLGTNVMIAVISYTGYDLEDATCVSKMSRERGMMY 743

Query: 742  GQIYQTETIDLSDDGNKVD--RGQKLFRRNK-DAKSLHSV-------IDSDGLPYVGQMI 791
            G IY+T+ +DL D    +    G +L  R++ D   L +        +D DGLP+ G + 
Sbjct: 744  GTIYKTKMVDLQDTAQSMGYRSGLRLGCRDRFDPNELKAYRKIAGDKLDIDGLPFPGGIF 803

Query: 792  HPGEPYCSIYDKTTNSWRTNSRKG-SESVFVDYVAV--DMKNSKNLPQKANIRFRHTRNP 848
               + Y   Y++    +        +E   V+ V V  + +  +   Q+A I+FR  R  
Sbjct: 804  TYQDAYYCYYNEHEQKYSVGKYDSHAEDAIVESVRVFTNKRPQEGGFQQAAIQFRIARPI 863

Query: 849  IIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
             IGDK +SRHGQKG+CS+LW   DMP++   G+ PDLI NPH FPSRMT+ M++E +A K
Sbjct: 864  NIGDKMASRHGQKGICSRLWATTDMPWTE-NGIVPDLIFNPHGFPSRMTVGMMIEFIAGK 922

Query: 909  GGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYG 968
               ++G+  D+TPF             DE+ +  +  G++L+  G NYHG E +YSG+ G
Sbjct: 923  AAMVNGRVYDSTPFV-----------FDENYTADEHFGKVLKEAGLNYHGYERMYSGISG 971

Query: 969  TELTCEIFIGPVYYQRLRHMVSDKFQVRS-TGTMDQITRQPIKGRKRGGGIRFGEMERDS 1027
             EL  +IF GPVYYQRLRHMV DKFQ R+  G +D  T+QP+KGR RGGG+R GEMERD 
Sbjct: 972  EELEADIFFGPVYYQRLRHMVYDKFQARADKGPIDPYTQQPVKGRARGGGVRMGEMERDG 1031

Query: 1028 LLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKV 1087
            L++HGAA++  DRL  CSD++   +C++CGSVL+ + + P K   +    +    +  K 
Sbjct: 1032 LISHGAAFICRDRLFHCSDFYKTRICTVCGSVLSVSKVKPDKTKDKNWKLM----SNGKW 1087

Query: 1088 TCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLG 1126
             C  C          +PYV +YLAAELA MN+K+  +  
Sbjct: 1088 ECRTCGPEAKTLLTDLPYVVKYLAAELAGMNVKLDFKFA 1126


>gi|290976959|ref|XP_002671206.1| predicted protein [Naegleria gruberi]
 gi|284084773|gb|EFC38462.1| predicted protein [Naegleria gruberi]
          Length = 1069

 Score =  633 bits (1633), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 402/1115 (36%), Positives = 602/1115 (53%), Gaps = 92/1115 (8%)

Query: 39   RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQ----FPVMLKTRRCHLQGADSQKLV 94
            R A ++Y G L A +  +  + G+    ER    Q    FPVM+ +  C+L     ++ +
Sbjct: 7    RIAGVNYGGSLKATILLKNEETGA---IERIPDIQLMEDFPVMINSSFCNLPKLSPKQKM 63

Query: 95   SLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRK 154
               EE  E GGYF++ G E V+R +   + N+P ++ R S+   +E +TDK +++RC R 
Sbjct: 64   LQGEEEHESGGYFVVRGSEVVYRLLTQQRANFPFAITRPSWMGYKEDFTDKGILVRC-RH 122

Query: 155  DQSSVT--LKLYYLLNGSVRLGFWLQGKEYLLPVGIVL--KALVDTNDLEIFNHLTCCYD 210
             ++ +T  + ++Y  +G V   F   G      + IVL  KAL + +D ++F  LT    
Sbjct: 123  PKTLITRLVNIHYRRDGVV---FMRAGNPVPFYINIVLALKALRECSDRDLFLLLT---- 175

Query: 211  EKYKKEKGAVGSPLVSERVKIILAEVQDL--SLTTRLQCLQHIGEHFQPVIDGLQSESYY 268
                       + +  +RV  +L + +    ++ TR   +  +G  + P   GL+     
Sbjct: 176  -------AGTKNKVTLDRVVELLGDFRKTFPTVQTREDAIIALGTIYDP--HGLRR---- 222

Query: 269  AVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
             + E V ++ +   +    +KF+ L++ +QKL+  VD     +N D   N E+L  G ++
Sbjct: 223  -LEEPVDKNKL---IKSGYEKFDFLVYCVQKLYKFVDGEIAEENLDDFDNHELLTVGEVL 278

Query: 329  T------IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSI 382
            +      IY K +L       K L++          +   LA  +   +   SK     I
Sbjct: 279  SNVIPLIIYNKIQLAHG-TCAKLLMKSATTMQPDMLEQKYLALFRDKCKSILSKACPNDI 337

Query: 383  ETMLKTGRLATQTGL--DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRK 440
              +   G ++       +L Q      + ER+NFLR IS FRA HRG +F    +T +R+
Sbjct: 338  NRLFSVGDVSVSAPFRPELSQTRALFTKLERINFLRVISHFRATHRGIAFLDSNSTRMRR 397

Query: 441  LLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVG 500
            L P  WGF+CPVH+PDG  CGL+NH++ T  + ++      +R       S++ + + +G
Sbjct: 398  LTPSFWGFICPVHSPDGHLCGLVNHLSQTTEIVTHQAKPKELR-------SVVEMCLKLG 450

Query: 501  MIPS-LPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVG 559
            M+PS   K +         V+LDG ++G +   +++ +   LR  KVS    +P  +E+ 
Sbjct: 451  MLPSSTEKCISVSIEDEAPVMLDGAIIGKVSHDKLQNLADQLRYCKVSGKYGLPKFMEIA 510

Query: 560  YVPL--SLGGAY-PGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDG 616
              P   ++   Y P L +FT   + VRPVR   LP+ +    E IG  EQVFM I     
Sbjct: 511  CQPKYSAMDIPYLPQLNIFTDIARAVRPVR--YLPTGQD---EWIGSAEQVFMNIAV--T 563

Query: 617  GDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKF 676
             +  + N    TH EI PT  +S + NLTP+ + NQSPR +YQCQMAKQ+M     ++  
Sbjct: 564  VEDIKPNT---THMEIDPTNFMSFLGNLTPFCNFNQSPRCIYQCQMAKQSMAAVFHSVDH 620

Query: 677  RADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVD 736
            R D KL+ ++ PQ P+ RT   T    DE+  G NA+VAV++YTGYDMEDAMI+NK+S +
Sbjct: 621  RVDTKLFDMKLPQKPLTRTKHQTDLPFDEFNNGCNAVVAVISYTGYDMEDAMIMNKTSYE 680

Query: 737  RGMCHGQIYQTETIDLSDDG----NKV-DRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMI 791
            RGM HG +++TE IDL++      N+V D+ +     +  AK     +D DGLP VG  +
Sbjct: 681  RGMMHGTVFKTEDIDLTEGTAFLTNRVFDKTE--MDSDYQAKEFED-LDYDGLPEVGLPL 737

Query: 792  HPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYV---AVDMKNSKNLPQKANIRFRHTRNP 848
              G  + + YD     +     K  +S  V  V   A D  + K + + A+I FR  RNP
Sbjct: 738  DEGSIFANYYDPEKQKFMPMKWKDVDSATVHSVKVIATDPSDYKKV-KHASITFRLNRNP 796

Query: 849  IIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
            IIGDKFSSRHGQKGV S LWP  DMPF+   G+ PD++INPHAFPSRMTI ML+ES+++K
Sbjct: 797  IIGDKFSSRHGQKGVLSILWPQEDMPFTD-GGIVPDIVINPHAFPSRMTIGMLVESMSSK 855

Query: 909  GGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYG 968
             G+LHG F DATPF+ S           E  + VD  GE L+  G+NYHG EV+YSG  G
Sbjct: 856  AGALHGYFPDATPFSFS-----------EENTAVDHFGEQLKKAGYNYHGNEVMYSGALG 904

Query: 969  TELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSL 1028
            T L  +I++G VYYQRLRHMVSDK+Q R  G  + IT QP+KGRK+ GG+R GEMERD+L
Sbjct: 905  TTLKADIYMGVVYYQRLRHMVSDKYQCRVGGPTNAITHQPVKGRKKAGGVRMGEMERDAL 964

Query: 1029 LAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVT 1088
            +A+GAA ++ DR   C+D   A VC+ C  + T         +   + G        ++ 
Sbjct: 965  VAYGAAAVVKDRFFDCTDSSTAIVCTCCNQMNTIVKPDMGTGSGPIVSGSGIGANLDELL 1024

Query: 1089 CHACQTSKGMETVAMPYVFRYLAAELAAMNIKITL 1123
            C  C+T++ + T+ +PY  +YL +ELAAM + + +
Sbjct: 1025 CCVCKTNQHLRTIYIPYTTKYLHSELAAMGVNLKI 1059


>gi|160331424|ref|XP_001712419.1| rpa2 [Hemiselmis andersenii]
 gi|159765867|gb|ABW98094.1| rpa2 [Hemiselmis andersenii]
          Length = 1129

 Score =  630 bits (1625), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 402/1141 (35%), Positives = 613/1141 (53%), Gaps = 123/1141 (10%)

Query: 25   YMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNF----GQFPVMLKT 80
            ++ ++ + ++   CR+ KI+Y+G  +  +   +   G      +F+F    G  P+M+K+
Sbjct: 67   FLKNKKIKKIPRQCRELKINYSGDFLLGISSVFGKHG------KFSFIYKIGNIPIMVKS 120

Query: 81   RRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRRE 140
             +C+L     ++L+ + EE  EMGGYFI+NG+E++ R +I+PK+N   ++ R +   R  
Sbjct: 121  LKCNLYQQKKKQLIEMDEEEIEMGGYFIINGMEKMIRLLIVPKKNISFTLSRLTNTSRGN 180

Query: 141  GYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLE 200
              T  +   R V + Q+S TL L+YL NGS+     +Q KE+ +PV +++K+L+  +D +
Sbjct: 181  LCTTLSCSFRSVDRLQTSRTLHLHYLTNGSIHARIIVQKKEFFIPVIMLIKSLMPISDKK 240

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQD----LSLTTRLQCLQHIGEHFQ 256
            IF  LT    + + K+K          R++I +A ++D      L T++  L+ +G+ F+
Sbjct: 241  IFESLT----KTFSKDKFY--------RIRI-MAMIKDAHETCDLKTQISVLEFLGKVFK 287

Query: 257  PVIDGLQSESYYA--VAETVIRDYIFVHLNDNND-KFNLLIFMLQKLFSLVDHTSVSDNP 313
                 LQ+ +  A  + E  + ++I +HL ++ + K  LL+FM+ KL S+    S+ DNP
Sbjct: 288  T---SLQTNTIDAKSIGEKFLFNHILIHLGEDKEAKVKLLLFMINKLLSVQKKISIEDNP 344

Query: 314  DSLQNQEILLPGHLITIYLKEKLEDWLRK--GKKLIQDEIENN----GKKFDFFNLANIK 367
            DSL +QE LLPGHLI +Y KEK E  L     +K  +  I NN    GK F        K
Sbjct: 345  DSLSSQEFLLPGHLIMVYFKEKFESSLNFIFSQKEFEQNISNNFNKEGKSFQ-------K 397

Query: 368  KVMEKNPSKQI---GTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAV 424
            +      SK     G  +  ++ TG   ++   +L Q +G +V  ER+NF RF+S+FR++
Sbjct: 398  QFCTDFLSKAFMTTGKGLAQIISTGSYVSKFNHELSQTSGLSVSIERINFGRFLSYFRSI 457

Query: 425  HRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRD 484
            HRG  F  L+ TS RKLLP+SWGFLCPVHTPDG  CG+LNH  S+  V     S  N  +
Sbjct: 458  HRGKFFFELKNTSGRKLLPQSWGFLCPVHTPDGALCGILNHTASSVLV-----SLSNPLN 512

Query: 485  FSKMRTSILRVLIGVGMIPSLPK-LVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRR 543
                +    R L         PK  +K    +    ++DG+++G IP    +  V  LR 
Sbjct: 513  CDFFKKYFFRYL---------PKNFLKEKKISSSIFMIDGKILGFIPKFFFKSFVDKLRT 563

Query: 544  LKVSAASVIPDDLEVGYVP-LSLGGAYPGLYLFTSPPKFVRPVRNISLPSEES------- 595
             KVS    I    E+  +   +   ++P   L +   + +RPV+  S   ++        
Sbjct: 564  EKVSVLGKISLGCEIFSISRFNRKCSFPSCILLSQDGRPLRPVKWFSFKKKKKFSVFKKK 623

Query: 596  ---------QNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTP 646
                       IE+IG  EQ F+ I   D            TH EI  + +LSV+A  TP
Sbjct: 624  NEKDFLNYCSEIEIIGTLEQCFLNIDNLDYQSSFFTKNMVGTHSEIEASNILSVIAGATP 683

Query: 647  YSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGI--D 704
            +SD NQSPRNMYQCQM+KQ++G        R D K + L  PQ PI R N   + G+  D
Sbjct: 684  FSDLNQSPRNMYQCQMSKQSVGTPFYTFWRRDDIKSFFLLNPQVPICR-NKIIQDGLQMD 742

Query: 705  EYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQK 764
             +P G N++V+V+ YTG+DMEDAMI+NKSS++RG     +Y    +D+     K     K
Sbjct: 743  AFPNGFNSVVSVITYTGFDMEDAMIINKSSIERGFASSNVYNCFDLDIKPSLLKKSNFFK 802

Query: 765  LFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYV 824
                    K+  +V+ +  L   G  + P E + SI+ K    +  NS   SE   +D +
Sbjct: 803  ------KKKTEENVLKTGDLLKKGAPLVPKESWYSIHKKNEAFFCYNS---SEKAIIDQI 853

Query: 825  AV--DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMR 882
             +  D++N++N+ +K +I+ R  R P++GDKF+SRHGQKGV S L+  ID+PF+ + GM 
Sbjct: 854  KIFSDIENNQNI-EKNSIKIRSRRRPLVGDKFASRHGQKGVFSYLYSSIDLPFTDL-GMN 911

Query: 883  PDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLV 942
            P++I NPH FPSRMTI ++LES+  K G+L G F D TPF              ++++ +
Sbjct: 912  PEIIFNPHGFPSRMTIGVILESMIGKIGALDGVFHDTTPFR-----------FGQNRAAI 960

Query: 943  DELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMD 1002
               GE LR  GF ++G E+ YSG  G   + ++F+G V YQRLRHMV DK+Q+ + G  +
Sbjct: 961  YHFGEKLRKSGFQFYGNEIFYSGYSGEPFSIDVFLGIVNYQRLRHMVLDKYQISNQGPKN 1020

Query: 1003 QITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTA 1062
             +TRQPIKG+K GG IRFGEMERD++L  G  +LLHDRL T SD H + +     ++   
Sbjct: 1021 SLTRQPIKGKKIGGSIRFGEMERDAILGQGCVFLLHDRLQTSSDLHASRL-----NIEKG 1075

Query: 1063 TFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKIT 1122
            +F   +K          P            +       + +PYV ++L  ELA++N+KI 
Sbjct: 1076 SFFDSEK----------PTSHTFFYKKKFFEKKVINRKILLPYVIKFLLIELASINLKIN 1125

Query: 1123 L 1123
             
Sbjct: 1126 F 1126


>gi|429962259|gb|ELA41803.1| hypothetical protein VICG_01155 [Vittaforma corneae ATCC 50505]
          Length = 1066

 Score =  627 bits (1616), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 404/1118 (36%), Positives = 583/1118 (52%), Gaps = 155/1118 (13%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR+  ++Y G +   ++ +Y   G+ +  E  + G FPVML++  C+L G  SQ L  L 
Sbjct: 74   CREQNLTYGGSVFLKIKLEY--RGNVIFNEYKDAGVFPVMLRSCMCNLNG--SQNLYELG 129

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            E+  E GGYFI++G +R+ R  +  K+N+  +  + S   +   YTD +V IR V ++Q 
Sbjct: 130  EDPKEPGGYFIIDGYDRMVRFHVAQKRNFIFAHQKKS---KDSTYTDYSVSIRSVSEEQI 186

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
                ++ Y  +G++    ++  + YL+PV ++L+AL +  D EIF               
Sbjct: 187  GQKNEIKYCADGNMHFKIYVNKRVYLIPVTLLLRALANCTDEEIF--------------- 231

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
             A+GS    +R+  +LA ++D    ++ +CL ++G  F+P+   L+ E+Y       I  
Sbjct: 232  VALGS---DQRILAMLARMKDYPCYSQKECLDYLGARFKPI---LKIENYEECGRHFIDR 285

Query: 278  YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
             +  HL+   DK+ L+I  ++KLF   D     D+ D   N E+     LI I  +EKL 
Sbjct: 286  VVLPHLSKFEDKYLLIIEAIKKLFRCYDGKIQPDDVDVPSNFELYTELQLIPICFREKLN 345

Query: 338  D----WLRKGKKLIQDEIENNGKKFDF--------------FNLANIKKVMEKNPSKQIG 379
            +    ++ K    +++ +        F                L  IKK  E +    IG
Sbjct: 346  EIKRSFMTKIMYFLRNRVSTTDSTTSFNVSEAAELTGELSDLQLEKIKKHFE-SLDFDIG 404

Query: 380  TSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVR 439
              ++  L TG + T    DL Q + +TV AER+N  RF S F +V RG  F+ L+ TS+R
Sbjct: 405  LKMKRFLSTGNITTVCCSDLLQNSSFTVLAERINIWRFTSHFASVSRGTFFSNLKITSIR 464

Query: 440  KLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVA--SYYDSRGNIRDFSKMRTSILRVLI 497
            KL PESWGF CP++TPDG PCGLL H++ +C V+  SY         F  M      +L 
Sbjct: 465  KLRPESWGFFCPINTPDGAPCGLLFHLSQSCFVSDKSYV--------FDDM------ILY 510

Query: 498  GVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLE 557
              G++    +   +G P    V  +G++ G   +++   +   LR  +  +        E
Sbjct: 511  DFGVVAP-HRGYNTGVP----VFYNGKLSGT--TNDPSGLAKSLREYRAKSGLCFEVCYE 563

Query: 558  VGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPD-- 615
             G       G    + +F S     R V N+ L  EE      IG  EQVF+ I+     
Sbjct: 564  YG------KGIDESVCIFDSYSNLYRKVFNVRLKREE-----WIGLKEQVFLNIKLSKYV 612

Query: 616  --------GGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTM 667
                      +    + F   + EI  T + S +A   P+SDHN SPRNMYQCQM KQ M
Sbjct: 613  TKDAYSKYDREAENEDTFEFEYREIDNTNIFSSIAACIPFSDHNPSPRNMYQCQMTKQAM 672

Query: 668  GFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDA 727
            G +    +FR D K + +   Q+P+VRT  Y+ +  +E+P G N IVAVL+YT YDMEDA
Sbjct: 673  GVACFNQQFRTDGKNFFVSYLQSPMVRTGAYSTF--EEFPIGINCIVAVLSYTAYDMEDA 730

Query: 728  MILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYV 787
            +++NKSS +RG+    IY+ E  +L  + + +D     F   K A+     I++D +  +
Sbjct: 731  VVINKSSTERGLFGAFIYKNEKFELEKNAH-ID-----FTPFKGAR-----IETDDV--L 777

Query: 788  GQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRN 847
             + +HP        D  T   RT    G+ES FV+ V +    S+++P    I  R  RN
Sbjct: 778  VRYVHP--------DLGT---RTIKYHGAESGFVEAVRI---FSRDVPC-VTITLRIQRN 822

Query: 848  PIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAA 907
            P IGDKF SRHGQKGVCS  W +IDMPF+   G+RPD+IINPHAFPSRMTI MLLES+  
Sbjct: 823  PTIGDKFCSRHGQKGVCSMFWQEIDMPFTEY-GLRPDIIINPHAFPSRMTIGMLLESICG 881

Query: 908  KGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVY 967
            K     GK  DA+PF  +V         DES      +GE L+ CGFNY+G E +YSGV 
Sbjct: 882  KSAMALGKIQDASPFIKNV-------AFDESDP--KSIGEELKKCGFNYYGNEPMYSGVT 932

Query: 968  GTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDS 1027
            GTE   +IFIGPVYYQRLRHMV+DK+QVR++G +   T QP+ GRK  GGIRFGEME+D+
Sbjct: 933  GTEFRTDIFIGPVYYQRLRHMVNDKYQVRTSGAVVATTHQPVGGRKNKGGIRFGEMEKDA 992

Query: 1028 LLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKV 1087
            L+AHG ++ L DRL  CSD      CS C ++L                           
Sbjct: 993  LIAHGVSFALQDRLMNCSDRTEFTYCSDCKTILFT--------------------GKDYC 1032

Query: 1088 TCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
            +C     SK +  VAMPYVF+YL  EL +MN+K+   +
Sbjct: 1033 SC----GSKSLMRVAMPYVFKYLCCELLSMNVKLVFDV 1066


>gi|312074086|ref|XP_003139812.1| DNA-directed RNA polymerase [Loa loa]
          Length = 916

 Score =  626 bits (1614), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 358/881 (40%), Positives = 515/881 (58%), Gaps = 60/881 (6%)

Query: 38  CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
           CRQ  ++Y G L  ++E      G+ +       G+ P+MLK+ RCHL+    ++L++  
Sbjct: 73  CRQRGLTYRGPLKVNIEICL--NGAKMDFCEVIVGEVPIMLKSNRCHLRWLTREQLIAHG 130

Query: 98  EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
           EE  E GGYFI  G E+V R ++  ++NYP+ +VR SFR++   +T   V+IRCVR + S
Sbjct: 131 EEGTEKGGYFICKGNEKVIRLLVANRRNYPIGLVRHSFREKGSLFTQYGVMIRCVRGNYS 190

Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
           +  + L+YL +G++ +    + + + LP   V+K+L   ND  I  H+  C         
Sbjct: 191 AAMMTLHYLESGTIVIALQYRRELFYLPFMYVIKSLTSMNDQCIMEHMIRCRP------- 243

Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETV--- 274
              G       V  +LA   D  +  +   L  IGE F+  +        + V+E V   
Sbjct: 244 ---GDHFWKGCVTTMLALCSDDGIVNQKAALTAIGERFR--VATQDRVGPWEVSEDVGRF 298

Query: 275 -IRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLK 333
            +R  + +HL+++ DKF LL +M QKL +L      +++PD+ Q QE  + GH++ + ++
Sbjct: 299 LLRVCVAIHLDNDEDKFFLLSYMAQKLIALTKGECAAESPDNPQFQEAAVSGHILLLIIR 358

Query: 334 EKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLAT 393
           E+LE+ L   ++ I+ E +   + F   +   + + M    S +I   +E  L TG L +
Sbjct: 359 ERLENTLNIARRKIELEAKRKAESF-LLSSHELIRAMGTQRSGEITRGLEYFLATGNLIS 417

Query: 394 QTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVH 453
           + GL LQQ  G++V AER+N LRF+S FRA+HRGA F  +RTT VRKL PE+WGF+CPVH
Sbjct: 418 RGGLTLQQNNGFSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICPVH 477

Query: 454 TPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIG-VGMIP-SLPKLVKS 511
           TPDG PCGLLNH+ ++ R+ ++Y +           TS L  L+G +GM+  S   L+ +
Sbjct: 478 TPDGAPCGLLNHVAASVRIVTHYSN-----------TSELPKLLGELGMVGHSAITLLPA 526

Query: 512 GPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYV-----PLSLG 566
            P  +  VL+DG+ VG I  S+   V   LR LKVS    +P   E+  V     P+++ 
Sbjct: 527 EP--MYPVLVDGKFVGHISQSQASYVEQQLRVLKVSDDIRVPSCAEIILVEKSIDPINIL 584

Query: 567 GAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFP 626
             YPGLY+FT P   +RPV+   LPS+    +E IG FEQV++ I C D  +        
Sbjct: 585 VQYPGLYIFTEPGHLMRPVK--YLPSDR---VEFIGTFEQVYLSI-CIDPEEA---EPNV 635

Query: 627 ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQ 686
             H+EIHP+ + S  ANL P+ DHNQSPRN+YQCQM KQTMG  V A  +RAD K+Y LQ
Sbjct: 636 TMHQEIHPSCLFSFAANLIPFPDHNQSPRNVYQCQMGKQTMGTPVHAWNYRADNKMYRLQ 695

Query: 687 TPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQ 746
            PQ PIV+   Y KYGIDEYP GTNA VAV++YTGYDMEDAM++NKSS +RG  HG + +
Sbjct: 696 FPQNPIVKPEPYEKYGIDEYPLGTNACVAVISYTGYDMEDAMVINKSSYERGFAHGSVIK 755

Query: 747 TETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN 806
            E ++L++      R  +      D ++    ID DGLP  G++   G+PY S+YD  TN
Sbjct: 756 VERVNLTE-----GRSAECPIFLCDPENPQKTIDLDGLPIPGRLYMEGDPYYSVYDIDTN 810

Query: 807 SWRTNSRKGSESVFVDYVAVDMKNSKNLPQK-----ANIRFRHTRNPIIGDKFSSRHGQK 861
           S++ +  K +E+ F   V + ++  +N+        A I++R  RNPIIGDKF+SRHGQK
Sbjct: 811 SYKIHKYKYAEAAFCGSVRI-VEEGENVGANKGKCHALIQWRTRRNPIIGDKFASRHGQK 869

Query: 862 GVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLL 902
           G+ S LWP   MPFS  +GM PD+I NPH FPSRMTI M L
Sbjct: 870 GINSFLWPTESMPFSE-SGMVPDIIFNPHGFPSRMTIGMFL 909


>gi|401398077|ref|XP_003880213.1| DNA-directed RNA polymerase,related [Neospora caninum Liverpool]
 gi|325114622|emb|CBZ50178.1| DNA-directed RNA polymerase,related [Neospora caninum Liverpool]
          Length = 1365

 Score =  625 bits (1613), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 436/1262 (34%), Positives = 621/1262 (49%), Gaps = 222/1262 (17%)

Query: 21   ESFDYMLDEGLSEMFDHCRQAKISYTGKL-MADVEFQYLDAGSPVVRERFNFGQFPVMLK 79
            ES D   D+ L  +  HCR+A I+Y   L +A V     D  +  VR+    G  P+M++
Sbjct: 133  ESRDACADQLL--LPRHCREAHITYGAPLKVAFVRSNNRDGSA--VRKDVVVGMAPLMVR 188

Query: 80   TRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRR 139
            ++ C  +G   ++L    E+  + GGYFI+NG ERV R V+  + N+P+++ R +F +R 
Sbjct: 189  SKLCSTRGMSPEELQRAGEDVDDGGGYFIINGNERVIRFVVQQRTNFPIALKRPAFANRD 248

Query: 140  EGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDL 199
               T  AV++R  R D +S +  L    +G       L  +E+     ++L+ L     L
Sbjct: 249  AFCTPYAVLLRSQRYDGTSTSNILLDTEDGRCTYRILLNRQEHFCSFFLLLRCLAGNLSL 308

Query: 200  EIFNH--LTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQC--LQHIGEHF 255
                   L  C+ +       A  +   S+ V+ I  +    + +  L+   L  +G  F
Sbjct: 309  AQLKAKLLEGCWSD-------AAEATDRSQLVEQIWGQEPTFADSDVLENRPLHQLGLIF 361

Query: 256  QPVIDGL--QSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNP 313
               +  L     SY A    VIR ++  HL++ ++KF++ + M +KL  L      +++ 
Sbjct: 362  WKGVSWLLRPGSSYEAAGTYVIRHFVLPHLDNWSEKFDMALLMYKKLRLLKQGKISAESL 421

Query: 314  DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEI---ENNGK-------KFDFFNL 363
            DS   QE++LPG +++  LK+ L   L K +     EI   +N+G           FF+L
Sbjct: 422  DSFAYQEVVLPGQILSSVLKDALFSCLAKIRLHYLQEIRMLKNSGNDPTSAIYSNKFFDL 481

Query: 364  ANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRA 423
            A  +   E      I   +   + TG + T T LDLQQ +G+TV A+RLN  RF+S FRA
Sbjct: 482  ATDRCCPE------IAQKLSYFMATGNIRT-TQLDLQQLSGWTVTADRLNVHRFLSHFRA 534

Query: 424  VHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMT-STCRVASYYDSRG-- 480
            VHRG  F  ++TTSVRKLL E+WGFLCPVHTPDG PCGLL H+T S   VA   D R   
Sbjct: 535  VHRGQFFTTMKTTSVRKLLGETWGFLCPVHTPDGAPCGLLLHLTQSAAPVALPPDRRAIA 594

Query: 481  NIRDFSKMRTSILRVLIGVGMIP-----------SLPKLVKSGPPA-------------- 515
            +IR F   +  +   L G+  +P           S P  ++ GP                
Sbjct: 595  SIRLFLH-KQGVCVDLEGISGLPPSDLGASVRHASRPPALQVGPGGGRKEETLVAAASSC 653

Query: 516  -VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYL 574
                +++DG VV  +   +    +   R LK   A       EV   P S GG    +++
Sbjct: 654  GTFPLVVDGTVVCRLDRKDFACWLEKFRDLKSREAEDFKQHWEVVGFPHS-GGNLESIFI 712

Query: 575  FTSPPKFV------------------RPVRNISL-PSEESQNIELIGPFEQVFMEI---- 611
            FT P + V                  +P   I+  PS+  +N  L+   E V  +I    
Sbjct: 713  FTFPGRLVRPVRHIKSGRIEYIGPLMQPWAAIACRPSDVKRNDRLLHLQEPVISQIVSSS 772

Query: 612  RCPDGGDGGRRNAF-----------------------------------------PATHE 630
             C      GR +A                                          P  +E
Sbjct: 773  PCSTDDLAGRFHALSLGAQAGESEDGEETAAKAKRFPLVAAREASGVDALFSFNAPVRYE 832

Query: 631  --EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTP 688
              E+  +  LS+ A+LTPYS HNQSPRN+YQCQM KQTMG    ++ +R D K Y L TP
Sbjct: 833  YVELKSSAFLSIAASLTPYSHHNQSPRNIYQCQMLKQTMGTPFHSVPYRHDNKAYRLITP 892

Query: 689  QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
            Q P+VRT  Y ++  D+YP+G NA+VAV+ YTG+DMEDAMILNK S++RG  HG +Y+T+
Sbjct: 893  QRPLVRTEDYRRFDFDDYPSGVNAVVAVMCYTGFDMEDAMILNKGSMERGAFHGCVYKTK 952

Query: 749  TIDLSDDGNKVDR-GQKLFRR-NKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT-- 804
             +D +    +     Q  F   N+  +  ++ +D+DG P +G  I  G  YC +   +  
Sbjct: 953  VVDAAPASARAGAASQYTFSNVNEFGRKHNATLDADGFPAIGAKIDKGSTYCRVQTSSSS 1012

Query: 805  ---TNSWRTNSRKGSESVFVD---YVAVDMKNSKNLPQ------KANIRFRHTRNPIIGD 852
                N+   ++ K  E+ +VD   Y++      + L +      +A++R R  R P+IGD
Sbjct: 1013 SSFANNGIQHAYKDGETAYVDGVTYISPPDSAHERLAKLGLKGCRASLRLRCVRKPVIGD 1072

Query: 853  KFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSL 912
            KF+SRHGQKG+ S LWP  DMPF+  +G+ PD++ NPH FPSRMTI ML+ES+A K  ++
Sbjct: 1073 KFASRHGQKGILSMLWPHEDMPFTE-SGLVPDILFNPHGFPSRMTIGMLIESMAGKAAAV 1131

Query: 913  HGKFMDATPFANSVKKTNG------DTG---------------------TDESKSLVDEL 945
            HG + DATPF     +T        D G                      DE ++ VD  
Sbjct: 1132 HGAYQDATPFREFPPQTADGKNKWVDQGGYHGWVKRGERYRTPEEERQAEDEPETPVDYF 1191

Query: 946  GEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQIT 1005
            G+ L   G+ Y+G E LYSGVYG  LT  IF G +YYQRLRHMV+DK QVR+TG +D +T
Sbjct: 1192 GKALMRAGYQYYGTEELYSGVYGVPLTAHIFTGLIYYQRLRHMVTDKHQVRATGPVDALT 1251

Query: 1006 RQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFI 1065
             QP+KGRKR GG+RFGEMERD+L++HGAA LL DRL  CSD H    C  CGS+LT    
Sbjct: 1252 HQPVKGRKRHGGVRFGEMERDALISHGAAALLQDRLLHCSDAHKTFCCPSCGSILTP--- 1308

Query: 1066 HPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
                                                       YLA ELAAMN+ I L+L
Sbjct: 1309 -------------------------------------------YLANELAAMNVTIRLKL 1325

Query: 1126 GD 1127
             +
Sbjct: 1326 AE 1327


>gi|399950011|gb|AFP65667.1| DNA-directed RNA polymerase I 135K chain [Chroomonas mesostigmatica
            CCMP1168]
          Length = 1127

 Score =  625 bits (1612), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 393/1140 (34%), Positives = 593/1140 (52%), Gaps = 101/1140 (8%)

Query: 14   ELVRHHIESFDYMLDEG-LSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFG 72
            EL   H+ +  + L++  + ++   CR+ K+SY G  +  +   +       +   F  G
Sbjct: 56   ELFGFHVSTPSFYLNKKKIKKIPRQCRELKVSYGGDFLIGIASLFEKKKKGFI---FRIG 112

Query: 73   QFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVR 132
            + P+M+++ +C+L     ++L  + EE  E+GGYFI+ G E++ R +I+PK+N P+   R
Sbjct: 113  EIPIMIRSMKCNLFYQKKKQLTEIDEEEVEVGGYFIIKGQEKMLRLLIVPKKNTPLVCSR 172

Query: 133  SSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKA 192
             +   R +  T  +  +R V + Q+S T+ L+YL  GS+ +   ++ KE+  P+ I++K+
Sbjct: 173  INNVQRGDLCTSLSCSLRSVDRVQTSRTIHLHYLTTGSIHVRIVVKKKEFFFPIIILIKS 232

Query: 193  LVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEV-QDLSLTTRLQCLQHI 251
            L + +D ++F  L           K   G   +  RV I+L E  Q   L  RL+ L  +
Sbjct: 233  LNEISDQQLFECLI----------KNNQGDKYLINRVMIMLKEAHQFCDLKERLKILDFL 282

Query: 252  GEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDN-NDKFNLLIFMLQKLFSLVDHTSVS 310
            G+  +       S +   ++E  +  YIFVHL +N   K +L  FM+ KL        + 
Sbjct: 283  GQILKIAFPENLSNNV-KISEIFLSKYIFVHLGNNRKSKADLFFFMMLKLVFTQKGICLE 341

Query: 311  DNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVM 370
            DNPDS+ +QE LLPGHL+ +Y KEK+E   R         I N  K  D   L   KK+ 
Sbjct: 342  DNPDSIDSQEFLLPGHLLLMYFKEKIEISSRYDYSFQYQNIGNLPKG-DTLPLIEKKKLY 400

Query: 371  EKNPSKQIGT---SIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRG 427
            +K   K  G     I   + TG L      +L Q  G +V  ER+NF RF+S+FR++HRG
Sbjct: 401  KKLIGKVFGKIHHGIFQTISTGSLMINLDQELVQTNGLSVSLERINFGRFLSYFRSLHRG 460

Query: 428  ASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYD-SRGN-IRDF 485
              F  L+TTS RKL P+SWGF+CPVHTPDG  CG+LNH++ +   +S    +RG  IR F
Sbjct: 461  KFFLDLKTTSSRKLWPQSWGFICPVHTPDGLLCGILNHLSFSVVFSSCNPINRGTLIRYF 520

Query: 486  SKMRTSILRVLIGVGMIPSLPKLVKSGPP-AVLSVLLDGRVVGVIPSSEIEKVVAHLRRL 544
            ++                 L KL  S P  + + +++DG+++G  P   ++  V   R  
Sbjct: 521  NRY----------------LQKLFFSSPKKSTIPLIIDGKIIGFAPKFSLKNFVDRFRSE 564

Query: 545  KVSAASVIPDDLEVGYVP-LSLGGAYPGLYLFTSPPKFVRPVRNISLPSE---------- 593
            KVS     P   E+ +V        +P L L T   + +RP++  +   +          
Sbjct: 565  KVSNIGFFPICFEILFVSRFHSKSFFPHLILSTEDGRLLRPLKWQTKKKKIAFLIRGEYE 624

Query: 594  ----ESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSD 649
                 S  IEL+G  EQ F+ I   D            +H EI  + + S +A  TP+S+
Sbjct: 625  DFLRNSSEIELLGSLEQNFLNIDNFDYQINFIEKFTKGSHREIEASSIFSTIAGATPFSE 684

Query: 650  HNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGI--DEYP 707
             NQSPR++YQCQM+KQ++G        R D K Y L TPQ PI R N   + G+  D +P
Sbjct: 685  MNQSPRDIYQCQMSKQSVGTPFYTFWRRDDSKSYFLITPQIPICR-NKIIQDGLCLDSFP 743

Query: 708  TGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFR 767
             G N++V+V++YTG+DMED M++NKSS+ RG     I  + +IDLS          K F+
Sbjct: 744  NGFNSVVSVISYTGFDMEDGMVINKSSIQRGFSMINI--SNSIDLSITS-------KSFQ 794

Query: 768  RNKDAKSLHSVIDSDGLPYVGQMIHPGEPY--CSIYDKTTNSWRTN-SRKGSESVFVDYV 824
            +NK       ++ +     +G  I  G+P   C I        +T    KG E   V+ +
Sbjct: 795  KNKTKNKFKEILFNRNFLKIGHTIKKGDPLAPCQIMKNIGKKTKTFFCYKGIEKTIVEQM 854

Query: 825  AVDMKNSKNLPQKANI-RFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRP 883
             +    ++ +  + NI + R  R P  GDKF+SRHGQKGV S  +   ++PFS + G+ P
Sbjct: 855  KIFFCKTEKIEGERNIIKLRSRRRPSTGDKFASRHGQKGVFSFDYSSENLPFSDL-GIIP 913

Query: 884  DLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVD 943
            ++I NPH  PSRMTI ++LES+A K G+LHG F D+TPF     +  G            
Sbjct: 914  EIIFNPHGLPSRMTIGVILESIAGKTGALHGVFQDSTPFRFGQNRPAGY----------- 962

Query: 944  ELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQ 1003
              GE LR  GF + G E+LYSG  G     ++F+G V YQRLRHMV DKFQ+ + G  + 
Sbjct: 963  HFGEKLRKSGFQFFGNEILYSGYTGEPFVVDVFVGIVNYQRLRHMVLDKFQISNFGPRNS 1022

Query: 1004 ITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTAT 1063
            +TRQPIKGRK GG IRFGEMERD++L  G  +LLHDR+ T SD H   +      +    
Sbjct: 1023 LTRQPIKGRKSGGSIRFGEMERDAILGQGCTFLLHDRIQTSSDLHSVKI-----GIKKGI 1077

Query: 1064 FIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITL 1123
            F++ + +  ++  G               + S+    + +PYV R+L +EL+++NIKI +
Sbjct: 1078 FLNNKGQLFKKEKG-------------NQRNSEFHRKILLPYVLRFLVSELSSINIKIVV 1124


>gi|387593249|gb|EIJ88273.1| RNA polymerase I [Nematocida parisii ERTm3]
 gi|387596039|gb|EIJ93661.1| RNA polymerase I [Nematocida parisii ERTm1]
          Length = 1143

 Score =  611 bits (1575), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 410/1155 (35%), Positives = 592/1155 (51%), Gaps = 159/1155 (13%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CRQ   +Y  +++ DV    +        +  + G  PVM+++  C+L      +LV  K
Sbjct: 76   CRQTVQTYQSEVLTDV---CISINGIAKTQEVSLGFIPVMVRSDLCYLSSMSDTELVQAK 132

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            E+ AEMGGYFI  G E++ R + + K+  P  + R S   + +  ++ AV  +   +   
Sbjct: 133  EDPAEMGGYFIYKGSEKICRLLQIQKKYVPFGIYRPSMSKKNKNMSEHAVSYKSTNQFGQ 192

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            S    L+Y  + S+++   L  +EY +P+ +VL+ L    D E+ +             +
Sbjct: 193  STLFSLHYFTDHSIKVRVRLLKREYYIPLHLVLRGLSGKTDQEVNDSF-----------R 241

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSE------------ 265
              +    + E V ++L         T+ +CL ++G  F+       +E            
Sbjct: 242  AVLKDADLMEYVDLLLQSFSLHGEYTQRECLVYLGNKFRLYYQMSHTEMTMQEARLKKSA 301

Query: 266  ---SYYAVAE-------------------------TVIRDYIFVHLNDNNDKFNLLIFML 297
                Y   A+                           I D I  H    NDK+NLLI  +
Sbjct: 302  KNWEYTTTAQGKSPSEVECDISKYQDCLTDEEVGVRFINDTIGSHTKSFNDKYNLLILCV 361

Query: 298  QKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKK 357
             KLF  V     SDN D+L   E +  G  +T  + +K++   R  +  +   I      
Sbjct: 362  SKLFQQVSGRVPSDNGDALSFHETITIGDTLTEIVTDKVQGIRRSFRNELISCIHYLSIS 421

Query: 358  FDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLA--TQTGLDLQQRAGYTVQAERLNFL 415
             +  N  ++ +++++  +     S+  +L  G L+    +   + Q+AG+T+ AERLN++
Sbjct: 422  VN--NPTDLNRILKRCFTP-FTPSVNRLLACGVLSFTNLSAYAMMQQAGFTIVAERLNYM 478

Query: 416  RFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASY 475
            RF S  R+VHRG+ F  +RT++VRKLLPESWGFLCPVHTPDG PCGLL H++  C V+  
Sbjct: 479  RFFSHLRSVHRGSFFEAMRTSTVRKLLPESWGFLCPVHTPDGSPCGLLTHLSHACVVSH- 537

Query: 476  YDSRGNIRDFSKMRTSILRV--LIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSE 533
                          T  L V  LI  GM+  +  L  +G P    VL +GRV G +    
Sbjct: 538  -------------ETYALPVHELISYGMVHLMSTL--TGVP----VLQNGRVTGTVSPDR 578

Query: 534  IEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSE 593
            +   +  LRR K+          +  Y  +   G    L +  +P +FVRP+ NI     
Sbjct: 579  VGSFIDSLRRRKLRGD-------KFKYAEIIYNG--DTLSIINTPNRFVRPLVNI----- 624

Query: 594  ESQNIELIGPFEQVFMEI----RCPDG-GDGGRR----NAFPA------THEEIHPTGML 638
            +   IE IG  EQ+++++    +C  G  D   R    N+ PA      TH E+ PT ML
Sbjct: 625  KEGCIEYIGSSEQMYVQVEGLAQCTAGVSDKITRMYACNSNPAMVYSAPTHREVSPTHML 684

Query: 639  SVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTY 698
            SVV+  TP  + N SPRNMYQCQMAKQ+MG +    K+R DQK+Y L   QTP + TN Y
Sbjct: 685  SVVSGSTPLGNFNPSPRNMYQCQMAKQSMGTTPHTQKYRTDQKVYSLDYVQTPTLHTNLY 744

Query: 699  TKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNK 758
             +YG+ EYP G N  +A+L+YTGYD+EDA+ILNK+SV+RG   G + +TET++ +D    
Sbjct: 745  AEYGLGEYPNGKNITIAILSYTGYDVEDAVILNKASVNRGFMRGCVLKTETVNFNDS--- 801

Query: 759  VDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMI-HPGEPYCSIYDKTTNSWRTNSRKGSE 817
                            L ++   +GLP VGQ+I   G  Y ++  K     + +    SE
Sbjct: 802  ------------PEFELGTLSCGEGLPEVGQLIPDRGVIYTTVNTKVLEE-KVHKNSASE 848

Query: 818  SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
            S+ V +++V         + ANI  R  R P IGDKFSSRHGQKGVCS L+ D D+PFS 
Sbjct: 849  SMRVKHISV--YQGAGGKRSANITLRIPRIPTIGDKFSSRHGQKGVCSILYEDEDIPFSE 906

Query: 878  VTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFAN------SVKKTNG 931
             +G+ PDLIINPHAFPSRM+I M +E++A+K GS+ G  MD T F        S     G
Sbjct: 907  -SGVTPDLIINPHAFPSRMSIGMFIENIASKAGSILGTPMDGTMFKYGEHGNPSCSSRIG 965

Query: 932  DTGTDESKSLVDE-LGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVS 990
                 E      E  G ML + GF   G E LYSGV G  L+ ++F G VYYQRLRHMVS
Sbjct: 966  SAPCPEGGVSASEYFGAMLESAGFKRGGGETLYSGVTGKPLSVDVFFGIVYYQRLRHMVS 1025

Query: 991  DKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVA 1050
            DK+QVR+ G +D +T+QP+ GR+RGGGIR GEMERD L++HGA+ LL DR+ TCSD  V 
Sbjct: 1026 DKYQVRTIGPIDPVTKQPVGGRRRGGGIRLGEMERDVLISHGASSLLADRMLTCSDRVVL 1085

Query: 1051 DVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYL 1110
            +VC  C    T +F                    +   C  C+TS+ +     PY+F+YL
Sbjct: 1086 NVCKQCS---TLSFF-------------------QSWMCSECRTSRNLIRAEFPYIFKYL 1123

Query: 1111 AAELAAMNIKITLQL 1125
             AELA++NI+  +Q+
Sbjct: 1124 VAELASVNIQCKIQM 1138


>gi|403224027|dbj|BAM42157.1| DNA-directed RNA polymerase [Theileria orientalis strain Shintoku]
          Length = 1204

 Score =  607 bits (1564), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 409/1203 (33%), Positives = 604/1203 (50%), Gaps = 171/1203 (14%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
            H + +  +Y   L+     ++ ++ S + +E    G  PVM+++ RC+L+G   +++V  
Sbjct: 60   HAKISHTTYEAPLVVTFGIKFNESESIITKE-VPVGHIPVMVRSNRCNLKGLSGEEMVKQ 118

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRK-D 155
             E+A E GGYFI+ G ER+ R++I+P+ NYP++    S  ++   +T+ A+ +RC    D
Sbjct: 119  GEDADEPGGYFIIKGNERMIRNLIVPRSNYPIAFKSESNLNKNLLFTEYAIFMRCQSDLD 178

Query: 156  QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFN-----------H 204
               VT  L+   N        ++    L+P+ ++L+AL+     E F             
Sbjct: 179  GCFVTNYLHLTTNKRCMFRVIVRNSTVLVPLFLLLRALMPYISEEEFRRKIMENCRNNRE 238

Query: 205  LTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQ--CLQHIGEHFQPVIDGL 262
            +   Y+  Y     A   P++SE     +  +Q+  L  RL   C   I ++  P     
Sbjct: 239  MAVLYNIIYMDM--AHCDPVLSE-----IDFIQNRYLY-RLGKVCWSQINQYLHP----- 285

Query: 263  QSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEIL 322
               ++   A  +I+ ++ +H   N DKFN L+FML KL+ L      S++ DS   QEIL
Sbjct: 286  -GSTFEECALHLIKYFVVIHAASNTDKFNTLMFMLNKLYDLSQGNIQSESYDSFAFQEIL 344

Query: 323  LPGHLITIYLKEKLEDWLRKGKKLIQDEIEN---------NGKKFDF------------- 360
            LPGH  +  LKE L   L + + +   EI N           KK ++             
Sbjct: 345  LPGHSYSCILKESLYLCLTRIRTIYNMEINNFLNHLKGGRGSKKRNYAGAEKMESEAGED 404

Query: 361  --------------FNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYT 406
                          FN A I KV  + P K     I+  L TG  AT +  +L Q +G+T
Sbjct: 405  QEGLIRNFMNSVQLFNFA-INKVAPEIPRK-----IQYFLSTGN-ATNSHYELNQNSGFT 457

Query: 407  VQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHM 466
            +  +R+N+ RF S  R+VHRG  F  + +T VRKLL E+WGF+CPVHTPDG PCGLL H+
Sbjct: 458  IVLDRINYHRFASHLRSVHRGNIFTKMHSTQVRKLLGETWGFICPVHTPDGAPCGLLLHL 517

Query: 467  TSTCRVA------SYYDSRGNIRDFSKMR-TSILRVLIGVGMIPSLPKLVKSGPPAVLSV 519
                +        SY ++   I+ F K + T       G G        ++ G    + +
Sbjct: 518  AQYAKAVTTPNRPSYLEA---IKAFLKSQSTHTTNYNAGNGNSYRDDGHLE-GKDGRIPL 573

Query: 520  LLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPP 579
            ++DG     I   ++E     L+  K      +    E   +    G A   +Y+ T P 
Sbjct: 574  VVDGIPQCYINLRDVEGFYDSLKSAKNIEKYGMCAHFETCAIRDKYG-AVSCIYIMTFPG 632

Query: 580  KFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPD------------------------ 615
            + VRPV+N+     +   IE IGP  Q++  I   +                        
Sbjct: 633  RLVRPVKNV-----KDNRIEYIGPITQLWSTIAINEDELNKSHEKLKNHKDESTSERDVT 687

Query: 616  --------GGDGGRRNAFPATHE--EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQ 665
                    G +    +  P  +E  E+    +LSV A+LTP+S+HNQSPRNMYQCQM KQ
Sbjct: 688  VDSQNYKIGDNYKELDNCPVVYEYMELDMCCILSVTASLTPFSNHNQSPRNMYQCQMLKQ 747

Query: 666  TMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDME 725
            ++G    A  +R++ K Y L + Q P+V T  Y K   ++YPTG N +VA++A++G+DME
Sbjct: 748  SVGLPFHAQVYRSEVKTYVLTSLQKPLVYTKEYEKMAFEDYPTGVNCVVAIIAHSGFDME 807

Query: 726  DAMILNKSSVDRGMCHGQIYQTETIDLSDDGN----KVDRGQKLFRRNKDAKSLHSVIDS 781
            DAMILNK+SVDRG+ +  IY+T+ +DL+        KV   +       D K +   +D+
Sbjct: 808  DAMILNKASVDRGLFNSFIYKTKVVDLNAQSGGKEGKVGHVEYFNNLGSDNKPIVKRLDT 867

Query: 782  DGLPYVGQMIHPGEPYCSIYDKTTNSWRTNS--RKGSESVFVDYVAVDMKNSKNLPQK-- 837
            DGLP +G+ +    P C I +K  N+   +   +   E+  VD+V +  ++   +  K  
Sbjct: 868  DGLPKIGEKLVKNSPICRIEEKGRNNLINDRVIKYTEETAVVDHVTLVGQSELTVGDKIS 927

Query: 838  --------ANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINP 889
                    A I+ R  R+PI+GDKF+SRHGQKG+ S +WP  DMPF    G+ PD+I NP
Sbjct: 928  CPGLKYGRALIKLRILRSPIVGDKFASRHGQKGILSAVWPTEDMPFLE-NGIVPDVIFNP 986

Query: 890  HAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDE--SKSLVDELGE 947
            H  PSRMTI  L+E +A K  +L+G                   G D   S+ +VD  G+
Sbjct: 987  HGLPSRMTIGKLIEGMAGKSAALYGN----------------KEGLDSQGSEDVVDNFGK 1030

Query: 948  MLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQ 1007
             L   G+ Y+G E +Y G  GTE+   IF+G +YYQRLRHMVSDK QVRSTG +D IT+Q
Sbjct: 1031 SLLEAGYEYYGTESMYCGTLGTEIQTHIFVGLIYYQRLRHMVSDKAQVRSTGPVDTITKQ 1090

Query: 1008 PIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHP 1067
            P+KG+K  GGIRFGEMERD+L+AHG   LL DRL  CSD H A VC  CGS+L+ +    
Sbjct: 1091 PVKGKKNLGGIRFGEMERDALIAHGTTNLLQDRLLHCSDAHQAYVCPKCGSILSPSISSL 1150

Query: 1068 QKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
            +    R++             C  C+ +   + V +PYV RY+A ELA MN+ I L L  
Sbjct: 1151 EANTKRQVS-----------VCRICKVN--CKLVTIPYVLRYVANELATMNVGIKLHLSQ 1197

Query: 1128 GAT 1130
              T
Sbjct: 1198 LGT 1200


>gi|71028652|ref|XP_763969.1| DNA-directed RNA polymerase subunit beta [Theileria parva strain
            Muguga]
 gi|68350923|gb|EAN31686.1| DNA-directed RNA polymerase, beta subunit, putative [Theileria parva]
          Length = 1235

 Score =  604 bits (1558), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 403/1190 (33%), Positives = 605/1190 (50%), Gaps = 154/1190 (12%)

Query: 39   RQAKISYT---GKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
            R AKIS+T     L+     ++ ++ S + +E    G  P+M+++ RC+L+G   ++++ 
Sbjct: 88   RHAKISHTTYEAPLVVTFGIKFFESESIITKE-VPVGHIPIMVRSNRCNLKGLSGEEMIK 146

Query: 96   LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
              E+A E GGYFI+ G E++ R +I+P+ NYP++    S   +   +T+ ++ +RC + D
Sbjct: 147  QGEDADEPGGYFIIKGNEKMLRQLIVPRSNYPIAFKSDSNSQKNVLFTEYSIFMRC-QSD 205

Query: 156  QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
                 +  Y  L  + R  F +  +  ++        LV    L          DE  +K
Sbjct: 206  LDGTCVSNYLHLTINKRCMFRVIVRNSIV--------LVPLFLLLRALLPFLSEDEFKRK 257

Query: 216  --EKGAVGSPLVSERVKIILAEVQ------DLSLTT-----RL--QCLQHIGEHFQPVID 260
              E  +    +     +I L  VQ      D+         RL   C   + ++  P   
Sbjct: 258  LLENCSNNQEMTVLYHRIFLDMVQCDPVLSDIDFIQNRYLYRLGKACWNQVSQYLHP--- 314

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQE 320
                 ++   A  +I+ ++ +H   N DKF  L+FM  KL +L +    S++ DS   QE
Sbjct: 315  ---GSTFEECAHHLIKYFVIIHAKSNLDKFRTLLFMFNKLVNLSNGNIQSESYDSFAFQE 371

Query: 321  ILLPGHLITIYLKEKLEDWLRKGKKLIQDEIEN-----NGKK------------------ 357
            +LLPG   +  LKE L   L + + +   EI N      GK+                  
Sbjct: 372  LLLPGQSYSCILKESLYLSLTRIRTVYNLEINNFLNHLKGKRGFKRNYAGVGKLENLDQD 431

Query: 358  ------FDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAER 411
                    F N  N+        + +I   +   L TG  A  T  +L Q  G+ +  +R
Sbjct: 432  LEEEMVRKFMNSVNLFNFAINKVAPEITKKVHHFLSTGN-AFNTHYELNQNTGFALVLDR 490

Query: 412  LNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMT---- 467
            +N+ RF S  R+VHRG  F  +R+T VRKLL E+WGF+CPVHTPDG PCGLL H++    
Sbjct: 491  INYHRFSSHLRSVHRGNIFMKMRSTQVRKLLGETWGFICPVHTPDGAPCGLLLHLSQYAK 550

Query: 468  --STCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRV 525
              +T    SY +S   I+ F  +++  L +      +        +G    + +++DG  
Sbjct: 551  PVTTPNKPSYLNS---IKSF--LKSQPLHISGSTNKV--------NGGNDRIPLVVDGIP 597

Query: 526  VGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV 585
            +  +   ++E+    L+  K      +    E   +    G  +  +Y+ T P + VRPV
Sbjct: 598  ISYVNLEDVEEFYDKLKTSKNLEKFGMCRHFETCAIRDKFG-VFSSIYIMTFPGRLVRPV 656

Query: 586  RNISLPSEESQNIELIGPFEQVFM---------------------------EIRCPDGGD 618
            RNI     +   IELIGP  Q++                            +++ P    
Sbjct: 657  RNI-----KDNQIELIGPITQLWSTIAINEYELNKSHNKLLDLQANPSAMNKVQVPKPLK 711

Query: 619  GGRRNAF---PATHE--EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQA 673
              + N     P  +E  E+    +LS+ A+LTP+S+HNQSPRNMYQCQM KQ++G    +
Sbjct: 712  SLKDNELDNCPVLYEYVELDMCCILSLSASLTPFSNHNQSPRNMYQCQMLKQSVGIPFHS 771

Query: 674  LKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKS 733
              +R++ K Y L + Q P+V T  Y K G  +YPTG N +VA++A++G+DMEDAMILNK+
Sbjct: 772  QFYRSEVKTYVLTSLQRPLVATKEYEKMGFQDYPTGVNCVVAIIAHSGFDMEDAMILNKA 831

Query: 734  SVDRGMCHGQIYQTETIDLSDDGNKV-DRG---QKLFRRNKDAKSLHSVIDSDGLPYVGQ 789
            SVDRG+ +  IY+++ IDL+   +   +RG   +     +KD+K +   +D DGLP +G+
Sbjct: 832  SVDRGLFNSFIYKSKVIDLNSQASSTKERGGTVEYFNNMDKDSKLIVKKLDFDGLPRLGE 891

Query: 790  MIHPGEPYCSIYDKTTNSWRTNS--RKGSESVFVDYVAVDMKNSKNLPQK---------- 837
             +    P+  I ++  N+   +   +   E   VD + +  K+   +  K          
Sbjct: 892  KLTKNSPFYRIEERGKNNIVNDKVVKYTEEPAIVDQITLVGKSEITVGDKISCPGLKHDR 951

Query: 838  ANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMT 897
            A I+ R  R+PI+GDKF+SRHGQKG+ S +WP  DMPF    G+ PD+I NPH  PSRMT
Sbjct: 952  AIIKLRVLRSPIVGDKFASRHGQKGILSAVWPTEDMPFLE-NGIVPDVIFNPHGLPSRMT 1010

Query: 898  IAMLLESVAAKGGSLHGKFMDATPFAN--SVKKTNGDTGTDESKSLVDELGEMLRTCGFN 955
            I  L+E +A K  S++GK  D+T F    S    NGD   +E   +VD  G+ L   G+ 
Sbjct: 1011 IGKLIEGMAGKVASIYGKPQDSTCFQAYYSENPENGDEEMEEV-DVVDYFGKSLIKSGYE 1069

Query: 956  YHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRG 1015
            Y+G E +Y G  GTE+   IF+G +YYQRLRHMVSDK QVRSTG +D IT+QP+KGRK  
Sbjct: 1070 YYGTESMYCGTLGTEIQTHIFVGLIYYQRLRHMVSDKAQVRSTGPVDTITKQPVKGRKNL 1129

Query: 1016 GGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREI 1075
            GGIRFGEMERD+L+AHG A LL DRL  CSD H+A VC  CGS+L+ +    +    R++
Sbjct: 1130 GGIRFGEMERDALIAHGTANLLQDRLLHCSDAHMAYVCPKCGSILSPSISSLEANTKRQV 1189

Query: 1076 GGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
                         C  CQ +   + V +PYV RY+A ELA MNI I L L
Sbjct: 1190 S-----------ICTICQVN--CKLVTIPYVLRYVANELATMNIGIKLHL 1226


>gi|399216343|emb|CCF73031.1| unnamed protein product [Babesia microti strain RI]
          Length = 1256

 Score =  601 bits (1549), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 409/1181 (34%), Positives = 594/1181 (50%), Gaps = 143/1181 (12%)

Query: 40   QAKIS---YTGKLMADVEFQYLDAG---SPVVRERFNFGQFPVMLKTRRCHLQGADSQKL 93
            QA+IS   Y+  +      Q    G   S +V +    GQ PVM+K++RC+L G    +L
Sbjct: 102  QARISHTTYSAPIYVTFALQSTSGGVECSQIVHKELLAGQIPVMVKSKRCNLCGLTGDEL 161

Query: 94   VSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVR 153
            V+  E+A E GGYFI+ G ER+ R +I  + NYP+ + R  FR +    T+ A+++R  R
Sbjct: 162  VARGEDAQEPGGYFIVRGNERLIRHMISSRSNYPIGVKRKQFRAKDAFNTEYAIIMRSQR 221

Query: 154  KDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKAL---VDTNDL-----EIFNHL 205
            +D + V   L Y  +    L   +      +P G +LKA    + T DL     E F H 
Sbjct: 222  RDGTVVGNVLCYTEDERCVLRVAINKVIKTIPFGTLLKAAKPHMSTWDLKKRLLEDFLHN 281

Query: 206  TCCYDEKYKKEKGAVG-SPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQS 264
                   Y   +  +   PLV++   +   E + L    +  C   +    +P       
Sbjct: 282  EEMTVHFYNIFQNMIFLEPLVAD---VDFVENRYLHQLGK-ACWHRVHTFMRP------G 331

Query: 265  ESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLP 324
             S       V+++YI V     +DKF  L+ M +KL  L     + D  DSL  QE+ LP
Sbjct: 332  SSLAECGLFVMKNYICVQSESLDDKFECLLHMFKKLILLARGYIIPDQIDSLAFQELTLP 391

Query: 325  GHLITIYLKEKLEDWLRKGKKLIQDEIENNGK--------------KFDFFNLANIKKVM 370
            G +    LKE L   L K K L   E+ N  K                +F +  ++   +
Sbjct: 392  GQIYASVLKESLYSALTKLKSLYSIEVANFKKYLATVEGVDDMEKVMLEFCSNISLFNYL 451

Query: 371  EKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASF 430
             +  + ++ + +   L TG +   +  + QQ  G+T+ A+R+N+ RF+S FR+VHRG +F
Sbjct: 452  TEKVAPEVPSKVNYFLSTGNI-NSSYFEFQQNLGWTIIADRMNYFRFMSHFRSVHRGNAF 510

Query: 431  AGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTS-TCRVASYYDS--RGNIRDFSK 487
              + +TS+RKLL ESWGFLCPVHTPDG PCGLL H++     + S  DS   G +R F K
Sbjct: 511  TQMLSTSMRKLLGESWGFLCPVHTPDGTPCGLLTHLSKHAWPLTSAPDSGTMGAVRKFLK 570

Query: 488  MRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVS 547
                 L +    G+      + K  P     V++DG  +  IPS +  +++  L   K+ 
Sbjct: 571  DLGYPLDLRAPGGITLDYRYVHKPVP-----VVVDGIPIARIPSDDAPQLMDALISAKLE 625

Query: 548  AASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQ- 606
                I  D E+ +      G    +Y+ T P + VR V+N+         +ELIGP  Q 
Sbjct: 626  GIKGIRKDFEI-FSTCEAKGQMEYIYVLTFPGRMVRMVKNLKF-----DRVELIGPIAQQ 679

Query: 607  -VFMEIRCPDGGDGGRR-------NAFPATHEEIHPTGML--SVVANLTPY--------- 647
              F+ I   +      R       ++ P ++ + +P   L  ++ +NL PY         
Sbjct: 680  WSFIAINTAELDQHRARIKLEYNLSSNPQSNPQSNPPSNLPSNLPSNLPPYPSFESYKRI 739

Query: 648  -------------------------------SDHNQSPRNMYQCQMAKQTMGFSVQALKF 676
                                           SD NQSPRNMYQCQM KQ+MG    +   
Sbjct: 740  DKLLENIPVHYTHIEIEPHGILSICANCTPFSDFNQSPRNMYQCQMLKQSMGIPAHSQPL 799

Query: 677  RADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVD 736
            R+D KLY+L TPQ+P+V T+ Y +  ++ Y TG NA+VA++AYTG+DMEDAM++NKSS++
Sbjct: 800  RSDGKLYNLITPQSPLVSTSDYRRLHLNNYATGANAVVAIMAYTGFDMEDAMVINKSSIE 859

Query: 737  RGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEP 796
            RG     + +T+ +D +  G     G     R      L    D+DGL  VGQ+I  G P
Sbjct: 860  RGFLRATLCRTKVLDAAPPGCSAKEGHCYVFRGPSNGPL----DADGLVRVGQLIANGSP 915

Query: 797  YCSIYDKTTNSW---RTNSRKGSESVFVDYVAVDMKNSKNLPQ--------KANIRFRHT 845
               I    T +    R    +  E   V  V +   N   + +        +A IR +  
Sbjct: 916  LARIEYAGTGAGARPRVEMYREEEPARVSSVTLVTPNPSRIDKCVESAPCSRAIIRLQSV 975

Query: 846  RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
            R P +GDKF+SRHGQKG+ S  W   DMPF+  +G+ PD++ NPH FPSRMTI ML+E++
Sbjct: 976  RVPDVGDKFASRHGQKGILSMTWRHEDMPFTE-SGIVPDILFNPHGFPSRMTIGMLIEAL 1034

Query: 906  AAKGGSLHGKF-MDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYS 964
            A K  ++ G+   D T F++        TG+D     V   G +LR  GF Y+G E +YS
Sbjct: 1035 AGKSAAVTGEVGADGTTFSHC-------TGSDP----VAYFGSVLRRAGFRYYGTEDMYS 1083

Query: 965  GVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEME 1024
            G  GT +   IF G +YYQRLRHMV+DK QVRSTG +D +T QP++G+KR GGIRFGEME
Sbjct: 1084 GATGTTIKTSIFTGCIYYQRLRHMVADKAQVRSTGPIDSLTHQPVQGKKRHGGIRFGEME 1143

Query: 1025 RDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP 1084
            RDSL+++GA +LL DRL  CSD H+A +C  CGS+L+A+      + +R+    PP    
Sbjct: 1144 RDSLISYGAPFLLQDRLLNCSDLHLACICPECGSLLSASTGPNDSQDMRDTTK-PPVCTV 1202

Query: 1085 KKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
              V CH          V +PYV RYLA ELA++N+ +   L
Sbjct: 1203 CSVPCH---------WVRIPYVLRYLANELASINVGLKFTL 1234


>gi|169806377|ref|XP_001827933.1| DNA-directed RNA polymerase [Enterocytozoon bieneusi H348]
 gi|161779001|gb|EDQ31028.1| DNA-directed RNA polymerase [Enterocytozoon bieneusi H348]
          Length = 1066

 Score =  599 bits (1545), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 392/1130 (34%), Positives = 585/1130 (51%), Gaps = 170/1130 (15%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR+   +Y+G +   ++  Y      +  +    GQ P+M+K+  CHL     Q+L+++K
Sbjct: 66   CRETGRTYSGNIFVKIKLMY--KNEILFHDYRGAGQLPIMVKSNMCHLSMMTDQELLAVK 123

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            E+  E GG+FI+NG +R+ R  I  K+N+   +          GY   +  IR V  D+ 
Sbjct: 124  EDPNEHGGFFIINGYDRIIRFHIAHKRNWVFGIYSKPKNSIFSGY---SCSIRSVCDDEI 180

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
                ++ + ++G++ L  +   K YL+P+  +L+AL +T D EI+  L            
Sbjct: 181  GQKNEIVHTVDGNIFLKCFFYHKGYLIPIIYILRALQNTTDKEIYTLLN----------- 229

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
                +P   E          +     + +CL ++G  F+ +    + ++Y    E ++ +
Sbjct: 230  ---QNPRAIE-----FLTKSNQPYYNKDECLNYLGSRFKHI---FRIDNYKEAGEELL-N 277

Query: 278  YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
             I +HL+ + DKFNLLI+ + KLF L+D    S++ D   N E+     LI + +KE LE
Sbjct: 278  RILIHLSSHIDKFNLLIYSINKLFKLIDGKIKSEDIDLSSNHELYTEAQLIPLCIKEHLE 337

Query: 338  DWLRKGK----KLIQDEIENNGK----------------------------KFD--FFNL 363
            ++ +  K    KL + E++N  +                            +FD  F + 
Sbjct: 338  EFKKLFKTRIIKLFKREVKNQYRDNETDTEITTQIDDIMSTNRSTNINDTVEFDKLFSDE 397

Query: 364  ANIKKVME--KNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFF 421
              IKK++E  K     IGT I   L TG + T    DL Q +G+T  + R+N+  F S F
Sbjct: 398  FMIKKIVELFKKTDLDIGTKIHKFLSTGNITTYNCSDLLQTSGFTFLSGRINYWEFASHF 457

Query: 422  RAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRV-ASYYDSRG 480
             +V RGA F+ L+ TSVRKL PES+GF CP++TPDG  CGLL ++T  C +  S Y    
Sbjct: 458  YSVSRGAFFSNLKITSVRKLQPESFGFFCPINTPDGSLCGLLTYLTQQCEITCSKYIFDT 517

Query: 481  NIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAH 540
            NI    ++  S +   +   MIP               V  +G+++G   +S   K++  
Sbjct: 518  NI--LYQLGVSFIN--LNNNMIP---------------VFYNGKIMGY--TSYPIKLIED 556

Query: 541  LRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIEL 600
            LR  +      I    E G     +      + L       +R V N     +++   E 
Sbjct: 557  LRNYRCKNKLKIEIVYEFGDKIDEIISICDDISLL------IRKVWN-----KKNNMEEY 605

Query: 601  IGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQC 660
            IG  EQVF++I       G   N F   ++EI    M S++AN  P++DHN SPRN+YQC
Sbjct: 606  IGIKEQVFLDIEL-----GTVHNTF--NYKEIDINNMFSIIANTIPFADHNPSPRNIYQC 658

Query: 661  QMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYT 720
            QMAKQ MG +   +K+R D KLY++   Q P+++T+ Y  +  +++P G N IVAVL+YT
Sbjct: 659  QMAKQAMGIAAYNIKYRVDNKLYNINYLQHPLIQTSNYQCF--EKFPLGFNCIVAVLSYT 716

Query: 721  GYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVID 780
            GYDMEDA+ILNK+SV+RGM +G I   E I L                 K+ K L++   
Sbjct: 717  GYDMEDAIILNKASVNRGMFNGFITMNEKIILE----------------KNDKILYT--- 757

Query: 781  SDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANI 840
                P +   +   +   +   K+    +T   +  E   V+ + V  +NS  L +K+N+
Sbjct: 758  ----PPIESKLKTNDIMLTY--KSDGIIKTVRYENIEMGSVEKIRV-FQNS--LTEKSNL 808

Query: 841  R----FRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRM 896
                 FR  RNP++GDKF SRHGQKG+C+ LW +IDMPF+   G++PD+IINPHAFPSRM
Sbjct: 809  TVIFTFRILRNPVVGDKFCSRHGQKGICAFLWNEIDMPFTE-NGLKPDIIINPHAFPSRM 867

Query: 897  TIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNY 956
            TI ML+ES+  K     GKF++  PF   +   N D   ++       +   L+ CGFNY
Sbjct: 868  TIGMLIESMCGKAAVKFGKFVNGDPF---IDNKNNDINVNKF-----NVNRKLKECGFNY 919

Query: 957  HGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGG 1016
            +G E +YSGV+GTEL  +IFIG VYYQRL+HMVSDKFQVR  G +   T+QP+KGRK  G
Sbjct: 920  YGNEPMYSGVFGTELKTDIFIGLVYYQRLKHMVSDKFQVRVGGAITSTTQQPVKGRKNKG 979

Query: 1017 GIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIG 1076
            GIRFGEME+D+L+AHG++ L+ DRL  CSD      C  C ++L   F  P  +   + G
Sbjct: 980  GIRFGEMEKDTLIAHGSSALIKDRLLDCSDKTTFKYCYKCKNIL---FSSPNDKC--KCG 1034

Query: 1077 GLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLG 1126
            G+                    + + MPYVF+YL AEL  MNIK+   + 
Sbjct: 1035 GIKS------------------KNIKMPYVFKYLLAELMGMNIKLEFDIS 1066


>gi|162605772|ref|XP_001713401.1| DNA-directed RNA polymerase I 135K chain [Guillardia theta]
 gi|13794333|gb|AAK39710.1|AF083031_67 DNA-directed RNA polymerase I 135K chain [Guillardia theta]
          Length = 1109

 Score =  595 bits (1535), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 379/1117 (33%), Positives = 586/1117 (52%), Gaps = 114/1117 (10%)

Query: 39   RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
            ++ KI+Y G+ +  +  Q  +    +V +    G FP+M+K+ +C+L G    +L  + E
Sbjct: 77   KELKITYQGEFIISINIQNNEKNFNLVYKE---GDFPIMIKSLKCNLFGLKPHQLTEIDE 133

Query: 99   EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
            E  E GGYFI NG E++ R +I+P++NY  +  + S   R + ++  A  IRCV +   S
Sbjct: 134  EEFENGGYFITNGTEKLIRLIIVPRRNYIFTSSKISNTLRGKNFSSFACSIRCVNRYGLS 193

Query: 159  VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTC-CYDEKYKKEK 217
             T  L+YL NGS+   F ++ +E+  PV I+LKA+ D +D EIF  +T   +D    KE 
Sbjct: 194  RTFHLHYLTNGSILCRFIIRNQEFFFPVVIILKAIKDVSDTEIFKDITNNLHDNNMFKE- 252

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
              V   L+S+    I +  +D         L++IG+ F+     +   +     + +I +
Sbjct: 253  --VAIKLISDSYNYIKSNFRD-------NYLEYIGKLFKIFEKKIHLNNL-ETGKNLIEN 302

Query: 278  YIFVHL-NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
             +F+H+ ND N K+ LLI+M+QKL       ++ +NPDS++ QEILL G+LI   L++KL
Sbjct: 303  NLFIHVENDMNQKYLLLIYMIQKLIKSRMGLNLGENPDSIEFQEILLSGNLIGSILEKKL 362

Query: 337  EDWLRKGKKLIQDEIENNGKKFDFFNLAN-----IKKVMEKNPSKQIGTSIETMLKTGRL 391
                     LI+ +        +F N+ N      K +M+   +  +G  I  ++ +G +
Sbjct: 363  S----ANFDLIKID--------EFMNIENSPIRKTKLIMKVFSNFSVG--IRYLISSGNV 408

Query: 392  ATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCP 451
                  ++ Q +G+ +  ER N+ RF+SFFR++HRG  F  L+TTS RKL+P +WG+LCP
Sbjct: 409  PLIVNFEIPQTSGFNISIERNNYSRFLSFFRSIHRGKYFTTLKTTSGRKLMPSNWGYLCP 468

Query: 452  VHTPDGEPCGLLNHMT--STCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
            +HTPDG  CG+LNH+T  S   V +  +    ++ F K +T   R+              
Sbjct: 469  IHTPDGSLCGILNHLTISSITSVVNPIERINFLKYFKKHKTIFDRL-------------- 514

Query: 510  KSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAY 569
             S       +LLDG+++G      ++     +R  KVS   +  + +E+  +        
Sbjct: 515  -SFKNRTSIILLDGKIIGFSTEIFLKWFTDKIRCEKVSDFGIFSNSIEIVCLKNENILNL 573

Query: 570  PGLYLFTSPPKFVRPVR----NISLPSEESQN----------IELIGPFEQVFMEIRCPD 615
              L +++S  + +RPVR    N +     S+N          IELIG  EQ ++ I    
Sbjct: 574  FELKIYSSEARLLRPVRWNSFNSNFNKTNSKNESSFTYNFHTIELIGSLEQSYLNIHQSI 633

Query: 616  GGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALK 675
                G       TH EI    + S+V   TP+ D NQSPRNMYQCQMAKQ++G     + 
Sbjct: 634  FTKKGEI-CLLYTHYEIDNLNIFSIVPGCTPFFDMNQSPRNMYQCQMAKQSIGIPFHNIW 692

Query: 676  FRADQKLYHLQTPQTPIVRTNTYTK-YGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSS 734
             + D K+Y L + Q PI R        G+D +  G NA+V VL+Y+ +DMEDA++ NKSS
Sbjct: 693  RKMDSKIYFLFSVQIPICRNKINQDGLGLDNFINGFNAVVGVLSYSSFDMEDAVVFNKSS 752

Query: 735  VDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPG 794
            ++RG+    IY T   D++    K          NK+  +LH     DG+  VG  +   
Sbjct: 753  IERGLGMSYIYNTSNFDVNLSMIK--------NLNKNYSTLHYNC-LDGICNVGNALKKK 803

Query: 795  EPYCSIYDKTTNS----WRTNSRKGSESVFVDYVAVDMKNSKNLPQKAN--IRFRHTRNP 848
            +    + +K  N+      T +    E   VD V + +KN   +  K N  IR +  R P
Sbjct: 804  DIIL-LNNKLVNNKLVRETTINYNNDEIASVDCVKI-LKNYSKIQSKHNVMIRLKSKRKP 861

Query: 849  IIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
            I GDKF+SRHGQKG+ S  +   ++PFS  TG+ PD++ NPH FPSRMTI M++ES++ K
Sbjct: 862  IEGDKFASRHGQKGILSFKYEVENLPFSE-TGIIPDILFNPHGFPSRMTIGMVIESLSGK 920

Query: 909  GGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYG 968
             G+L+G F D++PF + +         + +KS +   GE LR  GF ++G E+ YSG  G
Sbjct: 921  SGALNGNFNDSSPFTSFL---------NCNKSYI--FGEFLRENGFEFYGKEMFYSGFVG 969

Query: 969  TELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSL 1028
              L  ++F+G ++YQRL+HM+ DKFQV +    + +TRQPIKGRK GG IR GEMERD+L
Sbjct: 970  LPLQTDVFVGVIHYQRLKHMILDKFQVSNNSARNHLTRQPIKGRKLGGSIRLGEMERDAL 1029

Query: 1029 LAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVT 1088
            L HG  +LLH+++   SD H               FI      I+++         K ++
Sbjct: 1030 LGHGCIFLLHEKMQKSSDLH-------------GVFIENTNSDIKDLFFNKYNYNSKFLS 1076

Query: 1089 CHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
                   K    + +PYV RYL  EL+ +N+ + + L
Sbjct: 1077 TIKSYPRK----IFVPYVLRYLICELSVLNLNLNIFL 1109


>gi|119593999|gb|EAW73593.1| polymerase (RNA) I polypeptide B, 128kDa, isoform CRA_d [Homo
           sapiens]
          Length = 837

 Score =  585 bits (1509), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 331/837 (39%), Positives = 470/837 (56%), Gaps = 81/837 (9%)

Query: 12  LRELVRHHIESFDYMLDEGLS--------------------EMFD--------------- 36
           L+EL R H+ESF+Y + EGL                      + D               
Sbjct: 35  LQELTRAHVESFNYAVHEGLGLAVQAIPPFEFAFKDERISFTILDAVISPPTVPKGTICK 94

Query: 37  -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
                   CR  + +Y GKL AD+ +        ++++    G  P+M+K++ C+L+   
Sbjct: 95  EANVYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQFL--GYVPIMVKSKLCNLRNLP 152

Query: 90  SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
            Q L+   EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R  ++ R  GYT   V +
Sbjct: 153 PQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSM 212

Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
            CVR++ S+V + L+YL NG+V L F  + + + LP+G  LKALV  +D +IF  L    
Sbjct: 213 HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269

Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
                KE  +     VS+ ++I++ E      +T+ Q L ++GE F+  ++         
Sbjct: 270 ---KGKEDDSFLRNSVSQMLRIVMEE----GCSTQKQVLNYLGECFRVKLNVPDWYPNEQ 322

Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
            AE +    I +HL  N +KF +L  M +KLF+L     + DNPDSL NQE+L PG L  
Sbjct: 323 AAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFL 382

Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
           ++LKEKLE WL   K     + +      +  NL  I  +        +    E +  TG
Sbjct: 383 MFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMRIFTM-----GIDLTKPFEYLFATG 437

Query: 390 RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
            L ++TGL L Q +G  V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGFL
Sbjct: 438 NLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFL 497

Query: 450 CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
           CPVHTPDGEPCGL+NH+T+ C V + +    +I          L   +GV  I   P   
Sbjct: 498 CPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASI--------PALLCNLGVTPIDGAPHRS 549

Query: 510 KSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS-LGGA 568
            S       VLLDG +VG +       +   LR  KV     IP  +EV  +P++     
Sbjct: 550 YS---ECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEVVLIPMTGKPSL 606

Query: 569 YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPAT 628
           YPGL+LFT+P + VRPV+N++L  EE     LIG  EQ+FM +   +        A   T
Sbjct: 607 YPGLFLFTTPCRLVRPVQNLALGKEE-----LIGTMEQIFMNVAIFED----EVFAGVTT 657

Query: 629 HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTP 688
           H+E+ P  +LSV+AN  P+SDHNQSPRNMYQCQM KQTMGF +   + R+D KLY LQTP
Sbjct: 658 HQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTP 717

Query: 689 QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
           Q+P+VR + Y  Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG  HG +Y++E
Sbjct: 718 QSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSE 777

Query: 749 TIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTT 805
            IDLS+   + D       +  D + L   +D DGLP++G  +  G+PY S  +  T
Sbjct: 778 FIDLSEKIKQGDSSLVFGIKPGDPRVLQK-LDDDGLPFIGAKLQYGDPYYSYLNLNT 833


>gi|330038580|ref|XP_003239637.1| DNA-directed RNA polymerase I 135K chain [Cryptomonas paramecium]
 gi|327206561|gb|AEA38739.1| DNA-directed RNA polymerase I 135K chain [Cryptomonas paramecium]
          Length = 1102

 Score =  575 bits (1482), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 373/1122 (33%), Positives = 584/1122 (52%), Gaps = 132/1122 (11%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNF----GQFPVMLKTRRCHLQGADSQK 92
             C++ K SY G  ++     +        +ER NF    G+ P+M+K+ +C+L  A+S++
Sbjct: 83   QCKETKSSYKGDFLSIFHINHR-------KERKNFLIRIGKIPIMVKSLKCNLFNANSRQ 135

Query: 93   LVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCV 152
            +V + EE  EMGGYFI+NG E++ R +++PK+N+   + R +   + + YT  +   R V
Sbjct: 136  MVEIDEENLEMGGYFIVNGAEKIIRPLLVPKRNFIHVVSRIANLKKHKLYTSLSCSFRSV 195

Query: 153  RKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTND---LEIFNHLTCCY 209
             K Q+S T  L+YL++G++ +    +  E+ +P+ I+LK+L+D +D   ++IF +     
Sbjct: 196  DKIQNSKTFHLHYLISGNIHVRIVFKKHEFFIPIVILLKSLIDISDKKLIDIFGYFD--- 252

Query: 210  DEKYKKEKGAVGSPLVSERVKIILAEVQDL-SLTTRLQCLQHIGEHFQPVIDGLQSESYY 268
                      +G+    +R+  ++ E     +++ R + L  +G+  +   D     +  
Sbjct: 253  ----------LGNKYTRQRILTMIREAYSYCNISKRKEVLNFMGKILKTAFD-FDFLTNS 301

Query: 269  AVAETVIRDYIFVHL-NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
             ++E  +  Y+F+HL ++   KF+LL+ M+QKL          +N DS+++QE+LLPGHL
Sbjct: 302  EISEVFLSKYLFIHLGSEYKSKFDLLLLMVQKLLYAYKGNYSENNYDSIESQELLLPGHL 361

Query: 328  ITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLK 387
              IYL+E+ E+        I +   N  KK + + L  +K     N    +   IE ++ 
Sbjct: 362  YLIYLRERFENS-------IYNYFLNKIKKENKYTLKYLK-----NSFNLVTIDIEKLVS 409

Query: 388  TGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWG 447
            +G +      +L Q +G +V  ERLNF RF+S+FR +H+G      +  + RK+ P SWG
Sbjct: 410  SGNICFNFKEELIQLSGLSVSVERLNFGRFLSYFRNIHKGNFLLQSKKNTSRKIFPHSWG 469

Query: 448  FLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPK 507
            ++CPVHT DG  CG+ N+++     +  ++S  +I    K +  ++R   G   I    K
Sbjct: 470  YICPVHTSDGLLCGISNYLS----FSVIFNSSNSIEK-KKFKKYLIRN--GFDEIEHTQK 522

Query: 508  LVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGY-VPLSLG 566
                     + +LLDG+++G   + ++E ++  +R  K+S   +IP  +E+ Y   +   
Sbjct: 523  -------PFIPILLDGKLLGFCENLKLEWIIDKIRCEKISRLGIIPKSMEILYNRRIFTK 575

Query: 567  GAYPGLYLFTSPPKFVRPV--------RNISLPSEESQ-------NIELIGPFEQVFMEI 611
            G +      +   + +RPV        +N     + +Q        +ELIGP EQ  + I
Sbjct: 576  GFFSSCSFLSEENRLLRPVLCNNYVHTKNFFFSKKANQFNFQTEKELELIGPNEQFLLNI 635

Query: 612  RCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSV 671
            +  +  +   R  F  TH EI  + +LS+VA LTP+SD NQSPRN YQCQM KQ++G   
Sbjct: 636  QFLENENKENRKKFFWTHLEIDSSIILSLVAALTPFSDLNQSPRNTYQCQMFKQSIGVPF 695

Query: 672  QALKFRADQKLYHLQTPQTPIVRTNTYTKYG--IDEYPTGTNAIVAVLAYTGYDMEDAMI 729
                 R D K Y L  PQ P+ R N   + G  +D +P G NA+VAVL YT +DMEDAM+
Sbjct: 696  YTFWRRNDTKNYFLLIPQIPVCR-NKLIQDGMYLDAFPIGVNAVVAVLCYTSFDMEDAMV 754

Query: 730  LNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQ 789
            +N  S+DRG    ++  T   ++           K F   K+ + +  V         G+
Sbjct: 755  INNFSIDRGFFSSKVTTTSNFEM-----------KKFSYKKEFEQIIPVSP-------GK 796

Query: 790  MIHPGEP--YCSIYDKTTNSWRTNSRKGS-ESVFVDYVAVDMKNSKNLPQKANIRFRHTR 846
             I  GE   +  I  KT  + R +    S E   ++ + + +K  K       I+ R  R
Sbjct: 797  HISRGEVIFFSQIKGKTQKNQRISVYYDSYEKSVIECLKLTLKKEK---INCTIKLRARR 853

Query: 847  NPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVA 906
             P  GDKF+SRHGQKGV S   P IDMPFS + G+ PD+I NPH FPSRMTI +++ES+A
Sbjct: 854  KPNTGDKFASRHGQKGVFSMNCPCIDMPFSEI-GIVPDIIFNPHGFPSRMTIGVIVESLA 912

Query: 907  AKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGV 966
             K   L+G F D++PF   + K + +T            GE LR  GF ++G E+ YSG 
Sbjct: 913  GKVSCLNGFFYDSSPFC--LNKKHLETYC---------FGEKLRESGFKFYGNEIFYSGY 961

Query: 967  YGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERD 1026
             G  L  E++ G ++YQRL+HMV+DKFQV      + ITRQPIKG+K GG IRFGEMERD
Sbjct: 962  TGEPLKIEVYNGIIHYQRLKHMVNDKFQVSEISPRNSITRQPIKGKKFGGSIRFGEMERD 1021

Query: 1027 SLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKK 1086
             LL HG+ +LLHDRL   SD H   +      + +   + P  + I +            
Sbjct: 1022 VLLGHGSTFLLHDRLQLSSDLHSIKINMKTCDMFS---LKPVYKKIHD------------ 1066

Query: 1087 VTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGDG 1128
                  +T    +   +PY  ++LA EL  +NIK  L   DG
Sbjct: 1067 ------RTFFSNKNAFLPYASKFLATELLVLNIKFNLVPSDG 1102


>gi|340504398|gb|EGR30844.1| hypothetical protein IMG5_122450 [Ichthyophthirius multifiliis]
          Length = 864

 Score =  572 bits (1475), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 318/803 (39%), Positives = 492/803 (61%), Gaps = 42/803 (5%)

Query: 34  MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKL 93
           M + CR ++ +Y+  L+A +  + +D GS V + R + G+ P+++ +  CHL   +S++L
Sbjct: 27  MPEECRISRKTYSAPLLATI-CRTIDEGS-VEKIRLSLGEVPIVVMSDHCHLSKLNSRQL 84

Query: 94  VSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVR 153
           V+  E+  E GGYFI+NG E++ R +I+ K+NYP++ +R S+ +R   YT  AV ++CVR
Sbjct: 85  VNAHEDCNEFGGYFIVNGNEKLVRMLIMQKRNYPIAFLRPSYVNRGPNYTQYAVQMKCVR 144

Query: 154 KDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKY 213
           +D  + ++ L+Y+ +G V L    + +E+L+P+ ++LK L D +DL I+N L        
Sbjct: 145 EDLYAKSITLHYISDGQVFLRLLHRKQEFLIPIIVILKCLGDFSDLHIYNKLV------- 197

Query: 214 KKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSE-SYYAVAE 272
              KG  G   +S+RV++++   + ++L ++ +CL ++G+ F+ V++   +E +   V E
Sbjct: 198 ---KGQSGKSSLSDRVEVLIRGAKTMNLNSKQECLAYLGKSFRVVLNINNNEVNDKEVGE 254

Query: 273 TVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYL 332
             I + I VHL +N DKFN+L FM+ KL+ LV      +N DSLQNQE+LLPGHL T+ L
Sbjct: 255 IFINENICVHLKNNMDKFNILCFMVLKLYGLVSDEISPENLDSLQNQEVLLPGHLYTMIL 314

Query: 333 KEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLA 392
           KEK+E+ L+  ++ +  + +   +     +++ IKK +E   S  IGT IE  L TG L 
Sbjct: 315 KEKIEEMLQGIRQKVFKDGQKPEEAQKTLHVSYIKKAIEIQGS--IGTKIEYFLSTGNLK 372

Query: 393 TQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPV 452
           +QTGLDL Q  G+ + A++LN +RF+S FR+VHRGA F  ++TT+VRKLLPE+WGF+CPV
Sbjct: 373 SQTGLDLMQNKGFAIIADKLNNMRFLSHFRSVHRGAYFTEMKTTTVRKLLPENWGFICPV 432

Query: 453 HTPDGEPCGLLNHMTSTCRVASY--YDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVK 510
           HTPDG PCGLLNH+  TC+  +   YD   +I D  K+   +       GM P +  L  
Sbjct: 433 HTPDGAPCGLLNHIAMTCKPLTRPGYDKNKHI-DLQKLCCQL-------GMNPIVNDLSI 484

Query: 511 SGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKV--SAASVIPDDLEVGYVPLSLGGA 568
             PP +L+V+LDG+V+G I +   E+    L+ LK+      ++  DLE+G +   +   
Sbjct: 485 IYPPNMLTVILDGKVIGYIENECAEQFCQSLKYLKIVQDQERLVSADLEIGLIRKEIQDK 544

Query: 569 ---YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAF 625
              + G+YL+T+  +FVRPVR++ L    +QN E I PFEQV + I C        RN  
Sbjct: 545 QILFAGVYLYTNEGRFVRPVRHLHL----NQN-EWISPFEQVHLSIACTQED---IRN-- 594

Query: 626 PATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHL 685
              ++E+ P+ +LS++ +  P+ ++NQSPRNMYQCQMAKQTMG  +    +R D K Y L
Sbjct: 595 DTEYQELSPSYILSILPSQIPFLNYNQSPRNMYQCQMAKQTMGTPMHNFPYRFDNKSYRL 654

Query: 686 QTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIY 745
            +PQ P+V+     +YG+ +YP+GTNA+VAV++YTGYDMEDAMILNKSS +RG  HG +Y
Sbjct: 655 MSPQLPMVKGQNPEEYGLADYPSGTNAVVAVISYTGYDMEDAMILNKSSYERGFGHGCVY 714

Query: 746 QTETIDLSDDGNKVDRGQKLFR--RNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDK 803
           +  T D+ +   +     K+    RN D   +   ++ DG+P +G +I  G     I D 
Sbjct: 715 KNYTYDIGEFNKEKSSKFKMLHQVRNVDKSQIQEGLEIDGIPAIGSVIKKGTAVFQIQDT 774

Query: 804 TTNSWRTNSRKGSESVFVDYVAV 826
             N+ +T   K SE   +D VA+
Sbjct: 775 QKNTMKTFYHKESEMGRLDGVAI 797


>gi|355565994|gb|EHH22423.1| hypothetical protein EGK_05684 [Macaca mulatta]
          Length = 1039

 Score =  563 bits (1452), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 300/612 (49%), Positives = 386/612 (63%), Gaps = 38/612 (6%)

Query: 519  VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGA-YPGLYLFTS 577
            VLLDG +VG +       +   LR  KV     IP  +EV  +P++   + YPGL+LFT+
Sbjct: 460  VLLDGVMVGWVDKELAPGIADSLRHFKVLREKRIPPWMEVVLIPMTGKPSLYPGLFLFTT 519

Query: 578  PPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGM 637
            P + VRPV+N+ L  EE     LIG  EQ+FM +   +        A   TH+E+ P  +
Sbjct: 520  PCRLVRPVQNLELGKEE-----LIGTMEQIFMNVAIFED----EVFAGVTTHQELFPHSL 570

Query: 638  LSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNT 697
            LSV+AN  P+SDHNQSPRNMYQCQM KQTMGF +   + R+D KLY LQTPQ+P+VR + 
Sbjct: 571  LSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSM 630

Query: 698  YTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGN 757
            Y  Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG  HG +Y++E IDLS+   
Sbjct: 631  YDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIK 690

Query: 758  KVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSE 817
            + D       +  D + L   +D DGLP++G  +  G+PY S  +  T        K  E
Sbjct: 691  QGDSSLVFGIKPGDPRILQK-LDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKE 749

Query: 818  SVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS 876
            +  VD + V   ++ +   K   I  R  RNP IGDKF+SRHGQKG+ S+LWP  DMPF+
Sbjct: 750  NCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFT 809

Query: 877  GVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTD 936
              +GM PD++ NPH FPSRMTI ML+ES+A K  +LHG   DATPF  S           
Sbjct: 810  E-SGMVPDILFNPHGFPSRMTIGMLIESIAGKSAALHGLCHDATPFIFS----------- 857

Query: 937  ESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVR 996
            E  S ++  GEML+  G+N++G E LYSG+ G EL  +IFIG VYYQRLRHMVSDKFQVR
Sbjct: 858  EENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVR 917

Query: 997  STGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLC 1056
            +TG  D++T QPI GR   GGIRFGEMERD+LLAHG ++LLHDRL  CSD  VA VC  C
Sbjct: 918  TTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKC 977

Query: 1057 GSVLTATFIHPQKRAIREIGGLPPARAP---KKVTCHACQTSKGMETVAMPYVFRYLAAE 1113
            GS+L+     P           PP+ +    +K  C  C  S  ++TV++PYVFRY  AE
Sbjct: 978  GSLLSPLLEKP-----------PPSWSAMRNRKYNCTLCNRSDTIDTVSVPYVFRYFVAE 1026

Query: 1114 LAAMNIKITLQL 1125
            LAAMNIK+ L +
Sbjct: 1027 LAAMNIKVKLDV 1038



 Score =  210 bits (534), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 134/427 (31%), Positives = 211/427 (49%), Gaps = 62/427 (14%)

Query: 12  LRELVRHHIESFDYMLDEGLS--------------------EMFD--------------- 36
           L+EL R H+ESF+Y + EGL                      + D               
Sbjct: 35  LQELTRAHVESFNYAVHEGLGLAVQAIPPFEFAFKDERISFTILDAVISPPTVPKGTICK 94

Query: 37  -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
                   CR  + +Y GKL  D+ +        ++++    G  P+M+K++ C+L    
Sbjct: 95  EVSVYPAECRGRRSTYRGKL-TDINWAVNGISKGIIKQFL--GYVPIMVKSKLCNLHSLP 151

Query: 90  SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
            Q L+   EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R  ++ R  GYT  +  +
Sbjct: 152 PQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYS--M 209

Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
            CVR++ S+V + L+YL NG+V L F  + + + LP+G  LKALV  +D +IF  L    
Sbjct: 210 HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 266

Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
                KE  +     VS+ ++I++ E      +T+ Q L ++G  F+  ++         
Sbjct: 267 ---KGKEDDSFLRNSVSQMLRIVMEE----GCSTQKQVLNYLGGCFRVKLNVPDWYPNEQ 319

Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
            AE +    I +HL  N +KF +L  M +KLF+L     + DNPDSL NQE+L PG L  
Sbjct: 320 AAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFL 379

Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
           ++LKEKLE WL   K     + +      +  NL  I  +        +    E +  TG
Sbjct: 380 MFLKEKLEGWLVSIKIAFDKKAQKTNVSMNTDNLMRIFTM-----GIDLTKPFEYLFATG 434

Query: 390 RLATQTG 396
            L ++TG
Sbjct: 435 NLRSKTG 441


>gi|39644698|gb|AAH04882.4| POLR1B protein [Homo sapiens]
          Length = 582

 Score =  562 bits (1449), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 300/612 (49%), Positives = 387/612 (63%), Gaps = 38/612 (6%)

Query: 519  VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGA-YPGLYLFTS 577
            VLLDG +VG +       +   LR  KV     IP  +EV  +P++   + YPGL+LFT+
Sbjct: 3    VLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEVVLIPMTGKPSLYPGLFLFTT 62

Query: 578  PPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGM 637
            P + VRPV+N++L  EE     LIG  EQ+FM +   +        A   TH+E+ P  +
Sbjct: 63   PCRLVRPVQNLALGKEE-----LIGTMEQIFMNVAIFED----EVFAGVTTHQELFPHSL 113

Query: 638  LSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNT 697
            LSV+AN  P+SDHNQSPRNMYQCQM KQTMGF +   + R+D KLY LQTPQ+P+VR + 
Sbjct: 114  LSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSM 173

Query: 698  YTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGN 757
            Y  Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG  HG +Y++E IDLS+   
Sbjct: 174  YDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIK 233

Query: 758  KVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSE 817
            + D       +  D + L   +D DGLP++G  +  G+PY S  +  T        K  E
Sbjct: 234  QGDSSLVFGIKPGDPRVLQK-LDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKE 292

Query: 818  SVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS 876
            +  VD + V   ++ +   K   I  R  RNP IGDKF+SRHGQKG+ S+LWP  DMPF+
Sbjct: 293  NCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFT 352

Query: 877  GVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTD 936
              +GM PD++ NPH FPSRMTI ML+ES+A K  +LHG   DATPF  S           
Sbjct: 353  E-SGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFS----------- 400

Query: 937  ESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVR 996
            E  S ++  GEML+  G+N++G E LYSG+ G EL  +IFIG VYYQRLRHMVSDKFQVR
Sbjct: 401  EENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVR 460

Query: 997  STGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLC 1056
            +TG  D++T QPI GR   GGIRFGEMERD+LLAHG ++LLHDRL  CSD  VA VC  C
Sbjct: 461  TTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKC 520

Query: 1057 GSVLTATFIHPQKRAIREIGGLPPARAP---KKVTCHACQTSKGMETVAMPYVFRYLAAE 1113
            GS+L+     P           PP+ +    +K  C  C  S  ++TV++PYVFRY  AE
Sbjct: 521  GSLLSPLLEKP-----------PPSWSAMRNRKYNCTLCSRSDTIDTVSVPYVFRYFVAE 569

Query: 1114 LAAMNIKITLQL 1125
            LAAMNIK+ L +
Sbjct: 570  LAAMNIKVKLDV 581


>gi|67678361|gb|AAH96748.1| POLR1B protein, partial [Homo sapiens]
          Length = 594

 Score =  561 bits (1447), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 300/612 (49%), Positives = 387/612 (63%), Gaps = 38/612 (6%)

Query: 519  VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGA-YPGLYLFTS 577
            VLLDG +VG +       +   LR  KV     IP  +EV  +P++   + YPGL+LFT+
Sbjct: 15   VLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEVVLIPMTGKPSLYPGLFLFTT 74

Query: 578  PPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGM 637
            P + VRPV+N++L  EE     LIG  EQ+FM +   +        A   TH+E+ P  +
Sbjct: 75   PCRLVRPVQNLALGKEE-----LIGTMEQIFMNVAIFED----EVFAGVTTHQELFPHSL 125

Query: 638  LSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNT 697
            LSV+AN  P+SDHNQSPRNMYQCQM KQTMGF +   + R+D KLY LQTPQ+P+VR + 
Sbjct: 126  LSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSM 185

Query: 698  YTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGN 757
            Y  Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG  HG +Y++E IDLS+   
Sbjct: 186  YDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIK 245

Query: 758  KVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSE 817
            + D       +  D + L   +D DGLP++G  +  G+PY S  +  T        K  E
Sbjct: 246  QGDSSLVFGIKPGDPRVLQE-LDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKE 304

Query: 818  SVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS 876
            +  VD + V   ++ +   K   I  R  RNP IGDKF+SRHGQKG+ S+LWP  DMPF+
Sbjct: 305  NCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFT 364

Query: 877  GVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTD 936
              +GM PD++ NPH FPSRMTI ML+ES+A K  +LHG   DATPF  S           
Sbjct: 365  E-SGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFS----------- 412

Query: 937  ESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVR 996
            E  S ++  GEML+  G+N++G E LYSG+ G EL  +IFIG VYYQRLRHMVSDKFQVR
Sbjct: 413  EENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVR 472

Query: 997  STGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLC 1056
            +TG  D++T QPI GR   GGIRFGEMERD+LLAHG ++LLHDRL  CSD  VA VC  C
Sbjct: 473  TTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKC 532

Query: 1057 GSVLTATFIHPQKRAIREIGGLPPARAP---KKVTCHACQTSKGMETVAMPYVFRYLAAE 1113
            GS+L+     P           PP+ +    +K  C  C  S  ++TV++PYVFRY  AE
Sbjct: 533  GSLLSPLLEKP-----------PPSWSAMRNRKYNCTLCSRSDTIDTVSVPYVFRYFVAE 581

Query: 1114 LAAMNIKITLQL 1125
            LAAMNIK+ L +
Sbjct: 582  LAAMNIKVKLDV 593


>gi|49522875|gb|AAH73857.1| POLR1B protein, partial [Homo sapiens]
          Length = 560

 Score =  553 bits (1425), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 293/590 (49%), Positives = 377/590 (63%), Gaps = 38/590 (6%)

Query: 541  LRRLKVSAASVIPDDLEVGYVPLSLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIE 599
            LR  KV     IP  +EV  +P++   + YPGL+LFT+P + VRPV+N++L  EE     
Sbjct: 3    LRHFKVLREKRIPPWMEVVLIPMTGKPSLYPGLFLFTTPCRLVRPVQNLALGKEE----- 57

Query: 600  LIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQ 659
            LIG  EQ+FM +   +        A   TH+E+ P  +LSV+AN  P+SDHNQSPRNMYQ
Sbjct: 58   LIGTMEQIFMNVAIFED----EVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQ 113

Query: 660  CQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAY 719
            CQM KQTMGF +   + R+D KLY LQTPQ+P+VR + Y  Y +D YP GTNAIVAV++Y
Sbjct: 114  CQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISY 173

Query: 720  TGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVI 779
            TGYDMEDAMI+NK+S +RG  HG +Y++E IDLS+   + D       +  D + L   +
Sbjct: 174  TGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQK-L 232

Query: 780  DSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA- 838
            D DGLP++G  +  G+PY S  +  T        K  E+  VD + V   ++ +   K  
Sbjct: 233  DDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCV 292

Query: 839  NIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTI 898
             I  R  RNP IGDKF+SRHGQKG+ S+LWP  DMPF+  +GM PD++ NPH FPSRMTI
Sbjct: 293  CITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTI 351

Query: 899  AMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHG 958
             ML+ES+A K  +LHG   DATPF  S           E  S ++  GEML+  G+N++G
Sbjct: 352  GMLIESMAGKSAALHGLCHDATPFIFS-----------EENSALEYFGEMLKAAGYNFYG 400

Query: 959  VEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGI 1018
             E LYSG+ G EL  +IFIG VYYQRLRHMVSDKFQVR+TG  D++T QPI GR   GGI
Sbjct: 401  TERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGI 460

Query: 1019 RFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGL 1078
            RFGEMERD+LLAHG ++LLHDRL  CSD  VA VC  CGS+L+     P           
Sbjct: 461  RFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKP----------- 509

Query: 1079 PPARAP---KKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
            PP+ +    +K  C  C  S  ++TV++PYVFRY  AELAAMNIK+ L +
Sbjct: 510  PPSWSAMRNRKYNCTLCSRSDTIDTVSVPYVFRYFVAELAAMNIKVKLDV 559


>gi|332257262|ref|XP_003277728.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 4
            [Nomascus leucogenys]
          Length = 952

 Score =  550 bits (1417), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 289/579 (49%), Positives = 372/579 (64%), Gaps = 38/579 (6%)

Query: 552  IPDDLEVGYVPLSLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFME 610
            IP  +EV  +P++   + YPGL+LFT+P + VRPV+N+ +  EE     LIG  EQ+FM 
Sbjct: 406  IPPWMEVVLIPMTGKPSLYPGLFLFTTPCRLVRPVQNLEMGKEE-----LIGTMEQIFMN 460

Query: 611  IRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFS 670
            +   +        A   TH+E+ P  +LSV+AN  P+SDHNQSPRNMYQCQM KQTMGF 
Sbjct: 461  VAIFED----EVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFP 516

Query: 671  VQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMIL 730
            +   + R+D KLY LQTPQ+P+VR + Y  Y +D YP GTNAIVAV++YTGYDMEDAMI+
Sbjct: 517  LLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIV 576

Query: 731  NKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQM 790
            NK+S +RG  HG +Y++E IDLS+   + D       +  D + L   +D DGLP++G  
Sbjct: 577  NKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQK-LDDDGLPFIGAK 635

Query: 791  IHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPI 849
            +  G+PY S  +  T        K  E+  VD + V   ++ +   K   I  R  RNP 
Sbjct: 636  LQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPT 695

Query: 850  IGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKG 909
            IGDKF+SRHGQKG+ S+LWP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+A K 
Sbjct: 696  IGDKFASRHGQKGILSRLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGKS 754

Query: 910  GSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGT 969
             +LHG   DATPF  S           E  S ++  GEML+  G+N+HG E LYSG+ G 
Sbjct: 755  AALHGLCHDATPFIFS-----------EENSALEYFGEMLKAAGYNFHGTERLYSGISGL 803

Query: 970  ELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLL 1029
            EL  +IFIG VYYQRLRHMVSDKFQVR+TG  D++T QPI GR   GGIRFGEMERD+LL
Sbjct: 804  ELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALL 863

Query: 1030 AHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP---KK 1086
            AHG ++LLHDRL  CSD  VA VC  CGS+L+     P           PP+ +    +K
Sbjct: 864  AHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKP-----------PPSWSAMRNRK 912

Query: 1087 VTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
              C  C  S  ++TV++PYVFRY  AELAAMNIK+ L +
Sbjct: 913  YNCTLCNRSDTIDTVSVPYVFRYFVAELAAMNIKVKLDV 951



 Score =  209 bits (531), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 122/367 (33%), Positives = 190/367 (51%), Gaps = 54/367 (14%)

Query: 12  LRELVRHHIESFDYMLDEGLS--------------------EMFD--------------- 36
           L+EL R H+ESF+Y + EGL                      + D               
Sbjct: 35  LQELTRAHVESFNYAVHEGLGLAVQAIPPFEFTFKDERISFTILDAVISPPTVPKGTICK 94

Query: 37  -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
                   CR  + +Y GKL AD+ +        ++++    G  P+M+K++ C+L    
Sbjct: 95  EVNIYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQFL--GYVPIMVKSKLCNLHNLP 152

Query: 90  SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
            Q L+   EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R  ++ R  GYT   V +
Sbjct: 153 PQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSV 212

Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
            CVR++ S+V + L+YL NG+V L F  + + + LP+G  LKALV  +D +IF  L    
Sbjct: 213 HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269

Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
                KE  +     VS+ ++I++ E      +T+ Q L ++GE F+  ++         
Sbjct: 270 ---KGKEDDSFLRNSVSQMLRIVMEE----GCSTQKQVLNYLGECFRVKLNVPDWYPNEQ 322

Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
            AE +    I +HL  N +KF +L  M +KLF+L     + DNPDSL NQE+L PG L  
Sbjct: 323 AAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFL 382

Query: 330 IYLKEKL 336
           ++LK  L
Sbjct: 383 MFLKGSL 389


>gi|114579606|ref|XP_001144853.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 2 [Pan
            troglodytes]
          Length = 952

 Score =  550 bits (1416), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 289/579 (49%), Positives = 371/579 (64%), Gaps = 38/579 (6%)

Query: 552  IPDDLEVGYVPLS-LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFME 610
            IP  +EV  +P++     YPGL+LFT+P + VRPV+N+ L  EE     LIG  EQ+FM 
Sbjct: 406  IPPWMEVVLIPMTGKPSLYPGLFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQIFMN 460

Query: 611  IRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFS 670
            +   +        A   TH+E+ P  +LSV+AN  P+SDHNQSPRNMYQCQM KQTMGF 
Sbjct: 461  VAIFED----EVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFP 516

Query: 671  VQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMIL 730
            +   + R+D KLY LQTPQ+P+VR + Y  Y +D YP GTNAIVAV++YTGYDMEDAMI+
Sbjct: 517  ILTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIV 576

Query: 731  NKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQM 790
            NK+S +RG  HG +Y++E IDLS+   + D       +  D + L   +D DGLP++G  
Sbjct: 577  NKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQK-LDDDGLPFIGAK 635

Query: 791  IHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPI 849
            +  G+PY S  +  T        K  E+  VD + V   ++ +   K   I  R  RNP 
Sbjct: 636  LQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPT 695

Query: 850  IGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKG 909
            IGDKF+SRHGQKG+ S+LWP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+A K 
Sbjct: 696  IGDKFASRHGQKGILSRLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGKS 754

Query: 910  GSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGT 969
             +LHG   DATPF  S           E  S ++  GEML+  G+N++G E LYSG+ G 
Sbjct: 755  AALHGLCHDATPFIFS-----------EENSALEYFGEMLKAAGYNFYGTERLYSGISGL 803

Query: 970  ELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLL 1029
            EL  +IFIG VYYQRLRHMVSDKFQVR+TG  D++T QPI GR   GGIRFGEMERD+LL
Sbjct: 804  ELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALL 863

Query: 1030 AHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP---KK 1086
            AHG ++LLHDRL  CSD  VA VC  CGS+L+     P           PP+ +    +K
Sbjct: 864  AHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKP-----------PPSWSAMRNRK 912

Query: 1087 VTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
              C  C  S  ++TV++PYVFRY  AELAAMNIK+ L +
Sbjct: 913  YNCTLCNRSDTIDTVSVPYVFRYFVAELAAMNIKVKLDV 951



 Score =  207 bits (528), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 122/367 (33%), Positives = 190/367 (51%), Gaps = 54/367 (14%)

Query: 12  LRELVRHHIESFDYMLDEGLS--------------------EMFD--------------- 36
           L+EL R H+ESF+Y + EGL                      + D               
Sbjct: 35  LQELTRAHVESFNYAVHEGLGLAVQAIPPFEFAFKDERISFTILDAVISPPTVPKGTICK 94

Query: 37  -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
                   CR  + +Y GKL AD+ +        ++++    G  P+M+K++ C+L+   
Sbjct: 95  EANVYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQFL--GYVPIMVKSKLCNLRNLP 152

Query: 90  SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
            Q L+   EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R  ++ R  GYT   V +
Sbjct: 153 PQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSM 212

Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
            CVR++ S+V + L+YL NG+V L F  + + + LP+G  LKALV  +D +IF  L    
Sbjct: 213 HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269

Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
                KE  +     VS+ ++I++ E       T+ Q L ++GE F+  ++         
Sbjct: 270 ---KGKEDDSFLRNSVSQMLRIVMEE----GCLTQKQVLNYLGECFRVKLNVPDWYPNEQ 322

Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
            AE +    I +HL  N +KF +L  M +KLF+L     + DNPDSL NQE+L PG L  
Sbjct: 323 AAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFL 382

Query: 330 IYLKEKL 336
           ++LK  L
Sbjct: 383 MFLKGSL 389


>gi|83405170|gb|AAI10834.1| POLR1B protein [Homo sapiens]
          Length = 952

 Score =  549 bits (1415), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 289/579 (49%), Positives = 373/579 (64%), Gaps = 38/579 (6%)

Query: 552  IPDDLEVGYVPLSLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFME 610
            IP  +EV  +P++   + YPGL+LFT+P + VRPV+N++L  EE     LIG  EQ+FM 
Sbjct: 406  IPPWMEVVLIPMTGKPSLYPGLFLFTTPCRLVRPVQNLALGKEE-----LIGTMEQIFMN 460

Query: 611  IRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFS 670
            +   +        A   TH+E+ P  +LSV+AN  P+SDHNQSPRNMYQCQM KQTMGF 
Sbjct: 461  VAIFED----EVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFP 516

Query: 671  VQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMIL 730
            +   + R+D KLY LQTPQ+P+VR + Y  Y +D YP GTNAIVAV++YTGYDMEDAMI+
Sbjct: 517  LLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIV 576

Query: 731  NKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQM 790
            NK+S +RG  HG +Y++E IDLS+   + D       +  D + L   +D DGLP++G  
Sbjct: 577  NKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQK-LDDDGLPFIGAK 635

Query: 791  IHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPI 849
            +  G+PY S  +  T        K  E+  VD + V   ++ +   K   I  R  RNP 
Sbjct: 636  LQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPT 695

Query: 850  IGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKG 909
            IGDKF+SRHGQKG+ S+LWP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+A K 
Sbjct: 696  IGDKFASRHGQKGILSRLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGKS 754

Query: 910  GSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGT 969
             +LHG   DATPF  S           E  S ++  GEML+  G+N++G E LYSG+ G 
Sbjct: 755  AALHGLCHDATPFIFS-----------EENSALEYFGEMLKAAGYNFYGTERLYSGISGL 803

Query: 970  ELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLL 1029
            EL  +IFIG VYYQRLRHMVSDKFQVR+TG  D++T QPI GR   GGIRFGEMERD+LL
Sbjct: 804  ELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALL 863

Query: 1030 AHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP---KK 1086
            AHG ++LLHDRL  CSD  VA VC  CGS+L+     P           PP+ +    +K
Sbjct: 864  AHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKP-----------PPSWSAMRNRK 912

Query: 1087 VTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
              C  C  S  ++TV++PYVFRY  AELAAMNIK+ L +
Sbjct: 913  YNCTLCSRSDTIDTVSVPYVFRYFVAELAAMNIKVKLDV 951



 Score =  207 bits (527), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 122/367 (33%), Positives = 190/367 (51%), Gaps = 54/367 (14%)

Query: 12  LRELVRHHIESFDYMLDEGLS--------------------EMFD--------------- 36
           L+EL R H+ESF+Y + EGL                      + D               
Sbjct: 35  LQELTRAHVESFNYAVHEGLGLAVQAIPPFEFAFKDERISFTILDAVISPPTVPKGTICK 94

Query: 37  -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
                   CR  + +Y GKL AD+ +        ++++    G  P+M+K++ C+L+   
Sbjct: 95  EANVYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQFL--GYVPIMVKSKLCNLRNLP 152

Query: 90  SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
            Q L+   EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R  ++ R  GYT   V +
Sbjct: 153 PQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSM 212

Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
            CVR++ S+V + L+YL NG+V L F  + + + LP+G  LKALV  +D +IF  L    
Sbjct: 213 HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269

Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
                KE  +     VS+ ++I++ E       T+ Q L ++GE F+  ++         
Sbjct: 270 ---KGKEDDSFLRNSVSQMLRIVMEE----GCLTQKQVLNYLGECFRVKLNVPDWYPNEQ 322

Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
            AE +    I +HL  N +KF +L  M +KLF+L     + DNPDSL NQE+L PG L  
Sbjct: 323 AAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGGCMEDNPDSLVNQEVLTPGQLFL 382

Query: 330 IYLKEKL 336
           ++LK  L
Sbjct: 383 MFLKGSL 389


>gi|397465562|ref|XP_003804560.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 4 [Pan
            paniscus]
          Length = 952

 Score =  549 bits (1414), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 289/579 (49%), Positives = 371/579 (64%), Gaps = 38/579 (6%)

Query: 552  IPDDLEVGYVPLS-LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFME 610
            IP  +EV  +P++     YPGL+LFT+P + VRPV+N+ L  EE     LIG  EQ+FM 
Sbjct: 406  IPPWMEVVLIPMTGKPSLYPGLFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQIFMN 460

Query: 611  IRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFS 670
            +   +        A   TH+E+ P  +LSV+AN  P+SDHNQSPRNMYQCQM KQTMGF 
Sbjct: 461  VAIFED----EVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFP 516

Query: 671  VQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMIL 730
            +   + R+D KLY LQTPQ+P+VR + Y  Y +D YP GTNAIVAV++YTGYDMEDAMI+
Sbjct: 517  LLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIV 576

Query: 731  NKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQM 790
            NK+S +RG  HG +Y++E IDLS+   + D       +  D + L   +D DGLP++G  
Sbjct: 577  NKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQK-LDDDGLPFIGAK 635

Query: 791  IHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPI 849
            +  G+PY S  +  T        K  E+  VD + V   ++ +   K   I  R  RNP 
Sbjct: 636  LQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPT 695

Query: 850  IGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKG 909
            IGDKF+SRHGQKG+ S+LWP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+A K 
Sbjct: 696  IGDKFASRHGQKGILSRLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGKS 754

Query: 910  GSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGT 969
             +LHG   DATPF  S           E  S ++  GEML+  G+N++G E LYSG+ G 
Sbjct: 755  AALHGLCHDATPFIFS-----------EENSALEYFGEMLKAAGYNFYGTERLYSGISGL 803

Query: 970  ELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLL 1029
            EL  +IFIG VYYQRLRHMVSDKFQVR+TG  D++T QPI GR   GGIRFGEMERD+LL
Sbjct: 804  ELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALL 863

Query: 1030 AHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP---KK 1086
            AHG ++LLHDRL  CSD  VA VC  CGS+L+     P           PP+ +    +K
Sbjct: 864  AHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKP-----------PPSWSAMRNRK 912

Query: 1087 VTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
              C  C  S  ++TV++PYVFRY  AELAAMNIK+ L +
Sbjct: 913  YNCTLCNRSDTIDTVSVPYVFRYFVAELAAMNIKVKLDV 951



 Score =  207 bits (528), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 122/367 (33%), Positives = 190/367 (51%), Gaps = 54/367 (14%)

Query: 12  LRELVRHHIESFDYMLDEGLS--------------------EMFD--------------- 36
           L+EL R H+ESF+Y + EGL                      + D               
Sbjct: 35  LQELTRAHVESFNYAVHEGLGLAVQAIPPFEFAFKDERISFTILDAVISPPTVPKGTICK 94

Query: 37  -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
                   CR  + +Y GKL AD+ +        ++++    G  P+M+K++ C+L+   
Sbjct: 95  EANVYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQFL--GYVPIMVKSKLCNLRNLP 152

Query: 90  SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
            Q L+   EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R  ++ R  GYT   V +
Sbjct: 153 PQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSM 212

Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
            CVR++ S+V + L+YL NG+V L F  + + + LP+G  LKALV  +D +IF  L    
Sbjct: 213 HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269

Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
                KE  +     VS+ ++I++ E       T+ Q L ++GE F+  ++         
Sbjct: 270 ---KGKEDDSFLRNSVSQMLRIVMEE----GCLTQKQVLNYLGECFRVKLNVPDWYPNEQ 322

Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
            AE +    I +HL  N +KF +L  M +KLF+L     + DNPDSL NQE+L PG L  
Sbjct: 323 AAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFL 382

Query: 330 IYLKEKL 336
           ++LK  L
Sbjct: 383 MFLKGSL 389


>gi|426336849|ref|XP_004031667.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 4
            [Gorilla gorilla gorilla]
          Length = 952

 Score =  549 bits (1414), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 289/579 (49%), Positives = 372/579 (64%), Gaps = 38/579 (6%)

Query: 552  IPDDLEVGYVPLSLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFME 610
            IP  +EV  +P++   + YPGL+LFT+P + VRPV+N+ L  EE     LIG  EQ+FM 
Sbjct: 406  IPPWMEVVLIPMTGKPSLYPGLFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQIFMN 460

Query: 611  IRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFS 670
            +   +        A   TH+E+ P  +LSV+AN  P+SDHNQSPRNMYQCQM KQTMGF 
Sbjct: 461  VAIFED----EVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFP 516

Query: 671  VQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMIL 730
            +   + R+D KLY LQTPQ+P+VR + Y  Y +D YP GTNAIVAV++YTGYDMEDAMI+
Sbjct: 517  LLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIV 576

Query: 731  NKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQM 790
            NK+S +RG  HG +Y++E IDLS+   + D       +  D + L   +D DGLP++G  
Sbjct: 577  NKASWERGFAHGSVYKSEFIDLSEKIKQGDTSLVFGIKPGDPRVLQK-LDDDGLPFIGAK 635

Query: 791  IHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPI 849
            +  G+PY S  +  T        K  E+  VD + V   ++ +   K   I  R  RNP 
Sbjct: 636  LQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPT 695

Query: 850  IGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKG 909
            IGDKF+SRHGQKG+ S+LWP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+A K 
Sbjct: 696  IGDKFASRHGQKGILSRLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGKS 754

Query: 910  GSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGT 969
             +LHG   DATPF  S           E  S ++  GEML+  G+N++G E LYSG+ G 
Sbjct: 755  AALHGLCHDATPFIFS-----------EENSALEYFGEMLKAAGYNFYGTERLYSGISGL 803

Query: 970  ELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLL 1029
            EL  +IFIG VYYQRLRHMVSDKFQVR+TG  D++T QPI GR   GGIRFGEMERD+LL
Sbjct: 804  ELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALL 863

Query: 1030 AHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP---KK 1086
            AHG ++LLHDRL  CSD  VA VC  CGS+L+     P           PP+ +    +K
Sbjct: 864  AHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKP-----------PPSWSAMRNRK 912

Query: 1087 VTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
              C  C  S  ++TV++PYVFRY  AELAAMNIK+ L +
Sbjct: 913  YNCTLCNRSDTIDTVSVPYVFRYFVAELAAMNIKVKLDV 951



 Score =  208 bits (530), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 122/367 (33%), Positives = 191/367 (52%), Gaps = 54/367 (14%)

Query: 12  LRELVRHHIESFDYMLDEGLS--------------------EMFD--------------- 36
           L+EL R H+ESF+Y + EGL                      + D               
Sbjct: 35  LQELTRAHVESFNYAVHEGLGLAVQAIPPFEFAFKDERISFTILDAVISPPTVPKGTICK 94

Query: 37  -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
                   CR  + +Y GKL AD+ +        ++++    G  P+M+K++ C+L+   
Sbjct: 95  EANVYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQFL--GYVPIMVKSKLCNLRNLP 152

Query: 90  SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
            Q L+   EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R  ++ R  GYT   V +
Sbjct: 153 PQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSM 212

Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
            CVR++ S+V + L+YL NG+V L F  + + + LP+G  LKALV  +D +IF  L    
Sbjct: 213 HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269

Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
                KE  +     VS+ ++I++ E      +T+ Q L ++GE F+  ++         
Sbjct: 270 ---KGKEDDSFLRNSVSQMLRIVMEE----GCSTQKQVLNYLGECFRVKLNVPDWYPNEQ 322

Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
            AE +    I +HL  N +KF +L  M +KLF+L     + DNPDSL NQE+L PG L  
Sbjct: 323 AAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFL 382

Query: 330 IYLKEKL 336
           ++LK  L
Sbjct: 383 MFLKGSL 389


>gi|402891938|ref|XP_003909185.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 4
            [Papio anubis]
          Length = 952

 Score =  548 bits (1413), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 289/579 (49%), Positives = 372/579 (64%), Gaps = 38/579 (6%)

Query: 552  IPDDLEVGYVPLSLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFME 610
            IP  +EV  +P++   + YPGL+LFT+P + VRPV+N+ L  EE     LIG  EQ+FM 
Sbjct: 406  IPPWMEVVLIPMTGKPSLYPGLFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQIFMN 460

Query: 611  IRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFS 670
            +   +        A   TH+E+ P  +LSV+AN  P+SDHNQSPRNMYQCQM KQTMGF 
Sbjct: 461  VAIFED----EVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFP 516

Query: 671  VQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMIL 730
            +   + R+D KLY LQTPQ+P+VR + Y  Y +D YP GTNAIVAV++YTGYDMEDAMI+
Sbjct: 517  LLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIV 576

Query: 731  NKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQM 790
            NK+S +RG  HG +Y++E IDLS+   + D       +  D + L   +D DGLP++G  
Sbjct: 577  NKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQK-LDDDGLPFIGAK 635

Query: 791  IHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPI 849
            +  G+PY S  +  T        K  E+  VD + V   ++ +   K   I  R  RNP 
Sbjct: 636  LQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPT 695

Query: 850  IGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKG 909
            IGDKF+SRHGQKG+ S+LWP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+A K 
Sbjct: 696  IGDKFASRHGQKGILSRLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGKS 754

Query: 910  GSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGT 969
             +LHG   DATPF  S           E  S ++  GEML+  G+N++G E LYSG+ G 
Sbjct: 755  AALHGLCHDATPFIFS-----------EENSALEYFGEMLKAAGYNFYGTERLYSGISGL 803

Query: 970  ELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLL 1029
            EL  +IFIG VYYQRLRHMVSDKFQVR+TG  D++T QPI GR   GGIRFGEMERD+LL
Sbjct: 804  ELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALL 863

Query: 1030 AHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP---KK 1086
            AHG ++LLHDRL  CSD  VA VC  CGS+L+     P           PP+ +    +K
Sbjct: 864  AHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKP-----------PPSWSAMRNRK 912

Query: 1087 VTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
              C  C  S  ++TV++PYVFRY  AELAAMNIK+ L +
Sbjct: 913  YNCTLCNRSDTIDTVSVPYVFRYFVAELAAMNIKVKLDV 951



 Score =  206 bits (525), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 121/367 (32%), Positives = 190/367 (51%), Gaps = 54/367 (14%)

Query: 12  LRELVRHHIESFDYMLDEGLS--------------------EMFD--------------- 36
           L+EL R H+ESF+Y + EGL                      + D               
Sbjct: 35  LQELTRAHVESFNYAVHEGLGLAVQAIPPFEFAFKDERISFTILDAVISPPTVPKGTICK 94

Query: 37  -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
                   CR  + +Y GKL AD+ +        ++++    G  P+M+K++ C+L    
Sbjct: 95  EVSVYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQ--CLGYVPIMVKSKLCNLHSLP 152

Query: 90  SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
            Q L+   EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R  ++ R  GYT   V +
Sbjct: 153 PQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSM 212

Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
            CVR++ S+V + L+YL NG+V L F  + + + LP+G  LKALV  +D +IF  L    
Sbjct: 213 HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269

Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
                KE  +     VS+ ++I++ E      +T+ Q L ++GE F+  ++         
Sbjct: 270 ---KGKEDDSFLRNSVSQMLRIVMEE----GCSTQKQVLNYLGECFRVKLNVPDWYPNEQ 322

Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
            AE +    I +HL  + +KF +L  M +KLF+L     + DNPDSL NQE+L PG L  
Sbjct: 323 AAEFLFNQCICIHLKSSTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFL 382

Query: 330 IYLKEKL 336
           ++LK  L
Sbjct: 383 MFLKGSL 389


>gi|378755817|gb|EHY65843.1| RNA polymerase I [Nematocida sp. 1 ERTm2]
          Length = 1063

 Score =  543 bits (1398), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 355/1048 (33%), Positives = 530/1048 (50%), Gaps = 156/1048 (14%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR    SY  ++ A +  Q +  G+ V  +  + G  PVM+++  C+L      +++  K
Sbjct: 76   CRLTSQSYQSEVFASL--QTVVNGA-VSTQEVSLGIIPVMVRSELCYLSEMKDAQMIKAK 132

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            EE  + GGYFI  G E++ R + + K+  P  + R     + +  ++ AV  +  R    
Sbjct: 133  EEPNDFGGYFIYKGTEKICRLIQIQKKYVPFGIYRPGMSKKSKNMSEHAVSYKSARPSGQ 192

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            +    L+Y  + S+++   +  KEY +P+ +VL+ L    D EI               K
Sbjct: 193  TSMFVLHYFTDHSIKIRVKMGKKEYYIPLHLVLRGLSGKTDQEIRESF-----------K 241

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGE------HFQPV--------IDGLQ 263
            G +    + E V ++L      +  T+ + L ++G       H  PV        +   +
Sbjct: 242  GVLKDDDLMEYVDLLLQSFSFHAEYTQKEALTYLGSKFRLYYHVSPVELASVGSRLKKQK 301

Query: 264  SESYYAVA---------ETVIRDY-----------------IFVHLNDNNDKFNLLIFML 297
              S +A A         E  I +Y                 + VH     +K++LL+  +
Sbjct: 302  KASMFASATAEEPIEELEKSIYEYTPMLSDMECGMNFINNTVAVHTASATEKYDLLVLCI 361

Query: 298  QKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIEN-NGK 356
             KLF  V     +DN D+L   E +  G  +T    +K++  +RK    I + + + +  
Sbjct: 362  AKLFQQVSGKIPADNGDALSFHEAITVGDTLTEIAVDKMQ-MIRK--TFINELVASIHYL 418

Query: 357  KFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQT--GLDLQQRAGYTVQAERLNF 414
                 ++  + +V++K  S    +S+  +L +G L+        + Q+AG+T+ AERLNF
Sbjct: 419  SISVTDITALSRVIKKAVSP-FTSSMHRLLASGVLSFNNLGSYAMMQQAGFTITAERLNF 477

Query: 415  LRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVA- 473
            LRF S  R++HRGA F  +RT++VRKLLPESWGFLCPVHTPDG PCGLL H++  C ++ 
Sbjct: 478  LRFFSHLRSLHRGAFFEAMRTSTVRKLLPESWGFLCPVHTPDGSPCGLLTHLSHACAISH 537

Query: 474  -SYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSS 532
             +Y  S   +     +R+ +  ++  +  IP               ++ +GRV+G I   
Sbjct: 538  QTYALSTAEL-----IRSGMNHLMSNLSGIP---------------IIQNGRVMGTISEK 577

Query: 533  EIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPS 592
             IE  +  LRR K+          E+ Y   +L        +  +P +FVRP+ NI    
Sbjct: 578  SIESFIESLRRKKILGGKF--KYAEIIYNTQTLN-------IINTPNRFVRPLMNI---- 624

Query: 593  EESQNIELIGPFEQVFMEIRCPDGGDGGRRNA------------------FPATHEEIHP 634
             +   +E IG  EQ+ ++I   +G   G++                       TH EI  
Sbjct: 625  -KENAVEYIGSSEQLHIQI---EGLSSGKKETTEKIQKIAEMCRNQDVVRVEPTHREIAA 680

Query: 635  TGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVR 694
            T +LSVVA  TP  + N SPRNMYQCQMAKQ+MG +    K R DQK+Y L   QTP + 
Sbjct: 681  TNILSVVAGSTPLGNFNPSPRNMYQCQMAKQSMGTAPHTQKHRTDQKIYCLDYVQTPTMH 740

Query: 695  TNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD 754
            TN Y KYG+ +YP G N  +A+L+YTGYD+EDA+ILNK+SVDRG   G + +TE I+ SD
Sbjct: 741  TNLYAKYGLGDYPNGKNITIAILSYTGYDLEDAVILNKASVDRGFMRGAVIKTEAINFSD 800

Query: 755  DGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRK 814
              +                 + ++ D +GLP VG++I   E   +  +      + +   
Sbjct: 801  MPD---------------MEIGTLNDKEGLPDVGKLIKDKETIYTTVNTKFLEEKAHKSH 845

Query: 815  GSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMP 874
              E++ V  V++    S N  + ANI  R  R P IGDKFSSRHGQKGVCS L+ D DMP
Sbjct: 846  ALENMRVQNVSI--YQSSNGKRAANITMRIPRVPTIGDKFSSRHGQKGVCSILYEDEDMP 903

Query: 875  FSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTG 934
            F+  +G+ PDLIINPHAFPSRM+I M +E++AAK G++ G  MD T F        G+ G
Sbjct: 904  FNE-SGITPDLIINPHAFPSRMSIGMFIENIAAKTGAMLGTPMDGTMFK------YGEEG 956

Query: 935  TDESKSLV--------------DELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPV 980
              +SKS +              +  G ML + GF   G EVLYSG+ G  L  ++F G V
Sbjct: 957  RPDSKSSIGSVPGPESDGISASEYFGNMLESVGFKRGGGEVLYSGITGKPLAVDVFFGIV 1016

Query: 981  YYQRLRHMVSDKFQVRSTGTMDQITRQP 1008
            YYQRLRHMVSDK+QVRS G +D +T+QP
Sbjct: 1017 YYQRLRHMVSDKYQVRSVGAVDPLTKQP 1044


>gi|84996561|ref|XP_953002.1| DNA-directed RNA polymerase I, second largest subunit [Theileria
            annulata strain Ankara]
 gi|65303998|emb|CAI76377.1| DNA-directed RNA polymerase I, second largest subunit, putative
            [Theileria annulata]
          Length = 1218

 Score =  537 bits (1384), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 339/947 (35%), Positives = 492/947 (51%), Gaps = 126/947 (13%)

Query: 247  CLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDH 306
            C   + ++  P        ++   A+ +I+ ++ +H   N DKF  L+FM  KL +L + 
Sbjct: 313  CWNQVSQYLHP------GSTFEECAQHLIKYFVIIHAKSNLDKFRTLLFMFNKLVNLSNG 366

Query: 307  TSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIEN-----NGKK---- 357
               S++ DS   QEI+L G   +  LKE L   L + + +   EI N      GK+    
Sbjct: 367  NIQSESYDSFAFQEIMLAGQSYSCILKESLYLCLTRIRTVYNLEINNFLSHLKGKRGFKR 426

Query: 358  --------------------FDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
                                  F N  N+        + ++   I   L TG  A  T  
Sbjct: 427  NFTGVGKPEILDQDLEEEMIRKFMNSVNLFNFAINKVAPEVTKKIHHFLSTGN-AFNTHY 485

Query: 398  DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDG 457
            +L Q  G+ +  +R+N+ RF S  R++HRG  F  +R+T VRKLL E+WGF+CPVHTPDG
Sbjct: 486  ELNQSTGFAIVLDRINYHRFSSHLRSIHRGNIFMKMRSTQVRKLLGETWGFICPVHTPDG 545

Query: 458  EPCGLLNHMTSTCRVA------SYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKS 511
             PCGLL H++   +        SY +S   I+ F K +      L   G    +     +
Sbjct: 546  APCGLLLHLSQYAKAVTTPNKPSYLNS---IKSFLKSQR-----LHNTGSTNKV-----N 592

Query: 512  GPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPG 571
            G    + +++DG  V  +   E+E+    LR  K      +    E   +    G  +  
Sbjct: 593  GGNDRIPLVVDGIPVAYVDVEEVEEFYDKLRTAKNLEKFGMCKHFETCAMRDKFG-VFSS 651

Query: 572  LYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFM---------------------- 609
            +Y+ T P + VRPVRNI     +   IELIGP  Q++                       
Sbjct: 652  IYIMTFPGRLVRPVRNI-----KDNQIELIGPITQLWSTIAINEYELNKSHNKLLSLQSN 706

Query: 610  -----EIRCPDGGDGGRRNAF---PATHE--EIHPTGMLSVVANLTPYSDHNQSPRNMYQ 659
                 +++ P      + N     P  +E  E+    +LS+ A+LTP+S+HNQSPRNMYQ
Sbjct: 707  PSAMNKVQVPKVVKSLKDNELDNCPVLYEYVELDMCCILSLSASLTPFSNHNQSPRNMYQ 766

Query: 660  CQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAY 719
            CQM KQ++G    +  +R++ K Y L + Q P+V T  Y K G  +YPTG N +VA++A+
Sbjct: 767  CQMLKQSVGIPFHSQFYRSEVKTYVLTSLQRPLVATKEYEKMGFQDYPTGVNCVVAIIAH 826

Query: 720  TGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD--DGNKVDRGQKLFRRN--KDAKSL 775
            +G+DMEDAMILNK+SVDRG+ +  IY+++ +DL+     NK   G   +  N  KD+K +
Sbjct: 827  SGFDMEDAMILNKASVDRGLFNSFIYKSKVVDLNSQYSSNKERGGTVEYFNNMDKDSKLI 886

Query: 776  HSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNS--RKGSESVFVDYVAVDMKNSKN 833
               +D DGLP +G+ +    P+  I +K  N+   +   +   E   VD + +  K+   
Sbjct: 887  VKKLDFDGLPRLGEKLTKNSPFYRIEEKGKNNIMNDRVVKYTDEPAIVDQITLVGKSDLT 946

Query: 834  LPQK----------ANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRP 883
            +  K          A I+ R  R+PI+GDKF+SRHGQKG+ S +WP  DMPF    G+ P
Sbjct: 947  VGDKISCPGLKHDRAIIKLRVLRSPIVGDKFASRHGQKGILSAVWPTEDMPFLE-NGIVP 1005

Query: 884  DLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSL-- 941
            D+I NPH  PSRMTI  L+E +A K  S++GK  D+T F  +    N D G +E + +  
Sbjct: 1006 DVIFNPHGLPSRMTIGKLIEGMAGKVASIYGKPQDSTCF-QTYYSENNDKGNEEMEEVDV 1064

Query: 942  VDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTM 1001
            VD  G+ L + G+ Y+G E +Y G  GTE+   IF+G +YYQRLRHMVSDK QVR+TG +
Sbjct: 1065 VDYFGKSLISAGYEYYGTESMYCGTLGTEIQTHIFVGLIYYQRLRHMVSDKAQVRATGPV 1124

Query: 1002 DQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLT 1061
            D IT+QP+KGRK  GGIRFGEMERD+L+AHG A LL DRL  CSD H+A VC  CGS+L+
Sbjct: 1125 DTITKQPVKGRKNLGGIRFGEMERDALIAHGTANLLQDRLLHCSDAHMAYVCPKCGSILS 1184

Query: 1062 ATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFR 1108
             +    +    R++             C  CQ +   + V +PYV R
Sbjct: 1185 PSISSLEANTKRQVS-----------ICTICQVN--CKLVTIPYVLR 1218



 Score = 67.0 bits (162), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 65/124 (52%), Gaps = 10/124 (8%)

Query: 37  HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQ---------G 87
           H +    +Y   L+     ++ ++ S + +E    G  P+M+++ RC+L+         G
Sbjct: 89  HAKTTHTTYEAPLIVTFGVKFFESESIITKE-VPVGHIPIMVRSNRCNLKVKFVDKKFTG 147

Query: 88  ADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAV 147
              ++++   E+  E GGYFI+ G E++ R +I+P+ NYP++    S   +   +T+ ++
Sbjct: 148 LSGEEMIKQGEDLDEPGGYFIIRGNEKMIRQLIVPRSNYPIAFKSESNSQKNVLFTEYSI 207

Query: 148 VIRC 151
            +RC
Sbjct: 208 FMRC 211


>gi|119593997|gb|EAW73591.1| polymerase (RNA) I polypeptide B, 128kDa, isoform CRA_b [Homo
           sapiens]
          Length = 824

 Score =  530 bits (1364), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 313/837 (37%), Positives = 450/837 (53%), Gaps = 103/837 (12%)

Query: 12  LRELVRHHIESFDYMLDEGLS--------------------EMFD--------------- 36
           L+EL R H+ESF+Y + EGL                      + D               
Sbjct: 35  LQELTRAHVESFNYAVHEGLGLAVQAIPPFEFAFKDERISFTILDAVISPPTVPKGTICK 94

Query: 37  -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
                   CR  + +Y GKL AD+ +        ++++    G  P+M+K++ C+L+   
Sbjct: 95  EANVYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQFL--GYVPIMVKSKLCNLRNLP 152

Query: 90  SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
            Q L+   EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R  ++ R  GYT   V +
Sbjct: 153 PQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSM 212

Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
            CVR++ S+V + L+YL NG+V L F  + + + LP+G  LKALV  +D +IF  L    
Sbjct: 213 HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269

Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
                KE  +     VS+ ++I++ E      +T+ Q L ++GE F+  ++         
Sbjct: 270 ---KGKEDDSFLRNSVSQMLRIVMEE----GCSTQKQVLNYLGECFRVKLNVPDWYPNEQ 322

Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
            AE +    I +HL  N +KF +L  M +KLF+L     + DNPDSL NQE+L PG L  
Sbjct: 323 AAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFL 382

Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
           ++LKEKLE WL   K     + +      +  NL  I  +        +    E +  TG
Sbjct: 383 MFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMRIFTM-----GIDLTKPFEYLFATG 437

Query: 390 RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
            L ++TGL L Q +G  V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGFL
Sbjct: 438 NLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFL 497

Query: 450 CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
           CPVHTPDGEPCGL+NH+T+ C V + +    +I          L   +GV  I   P   
Sbjct: 498 CPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASI--------PALLCNLGVTPIDGAPHRS 549

Query: 510 KSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS-LGGA 568
            S       VLLDG +VG +       +   LR  KV     IP  +EV  +P++     
Sbjct: 550 YS---ECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEVVLIPMTGKPSL 606

Query: 569 YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPAT 628
           YPGL+LFT+P + VRPV+N++L  E     ELIG  EQ+FM +   +        A   T
Sbjct: 607 YPGLFLFTTPCRLVRPVQNLALGKE-----ELIGTMEQIFMNVAIFE----DEVFAGVTT 657

Query: 629 HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTP 688
           H+E+ P  +LSV+AN  P                      FSV   + R+D KLY LQTP
Sbjct: 658 HQELFPHSLLSVIANFIP----------------------FSVLTYQDRSDNKLYRLQTP 695

Query: 689 QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
           Q+P+VR + Y  Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG  HG +Y++E
Sbjct: 696 QSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSE 755

Query: 749 TIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTT 805
            IDLS+   + D       +  D + L   +D DGLP++G  +  G+PY S  +  T
Sbjct: 756 FIDLSEKIKQGDSSLVFGIKPGDPRVLQK-LDDDGLPFIGAKLQYGDPYYSYLNLNT 811


>gi|156034861|ref|XP_001585849.1| hypothetical protein SS1G_13366 [Sclerotinia sclerotiorum 1980]
 gi|154698769|gb|EDN98507.1| hypothetical protein SS1G_13366 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1165

 Score =  518 bits (1333), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 283/642 (44%), Positives = 380/642 (59%), Gaps = 59/642 (9%)

Query: 519  VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSP 578
            V LDG+++G     +   +   LR  KV     +P +LE+GY+P S GG YPG+YL  +P
Sbjct: 548  VQLDGKIMGWCSPKQSLVIADTLRYWKVEGTHGVPTNLEIGYIPNSHGGQYPGIYLSAAP 607

Query: 579  PKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGML 638
             + VRPV+ ++L  E+      +GP EQ FM I   +        A   TH E  PT +L
Sbjct: 608  ARMVRPVKYLALDKED-----FVGPLEQPFMSIAVTEQ----EIEAGEHTHVEFDPTHIL 658

Query: 639  SVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTY 698
            S++AN+TP+SD NQSPRNMYQCQM KQ+MG    A+++R D K Y LQT QTPIVR   +
Sbjct: 659  SILANMTPFSDFNQSPRNMYQCQMGKQSMGTPGTAIRYRTDNKAYRLQTGQTPIVRAPLH 718

Query: 699  TKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNK 758
              YG D +P G N++VAV++YTGYDM+DAMI+NKS+ +RG  HG IY+T+  +L ++G+K
Sbjct: 719  NDYGFDNFPNGMNSVVAVISYTGYDMDDAMIINKSAHERGFGHGTIYKTKKYEL-EEGHK 777

Query: 759  VDRG---QKLFRRNKDA---KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNS 812
                   +KLF             + ID DGLP++G+M+  G+   + +   T S   N 
Sbjct: 778  SRSARNIKKLFGFAPGGLVKAEWKAAIDEDGLPFIGRMVQNGDLIAAWH---TVSMDENG 834

Query: 813  R-------------KGSESVFVDYV-AVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRH 858
            +             K +E  F++ V  +  +N     Q  +++ R  R+P+IGDKFSSRH
Sbjct: 835  KYVNRDGQTHFEKYKETEIAFIEEVRLIGNENGIEPCQAISVKLRIPRSPVIGDKFSSRH 894

Query: 859  GQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMD 918
            GQKGVCSQ WP +DMPF+  +G++PD IINPHAFPSRMTI M +ES+A K G+LHG   D
Sbjct: 895  GQKGVCSQKWPAVDMPFT-ESGIQPDTIINPHAFPSRMTIGMFVESLAGKAGALHGLAQD 953

Query: 919  ATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIG 978
            +TPF             DE     D  G  L   G+NY+G E +YSG+ G EL  +I+IG
Sbjct: 954  STPFK-----------FDEEHKAGDYFGHQLMKAGYNYYGNEPMYSGITGEELHADIYIG 1002

Query: 979  PVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLH 1038
             VYYQRLRHMV+DK+QVR+TG + Q+T QPIKGRK+GGGIR GEMERDSLLAHG A+LL 
Sbjct: 1003 VVYYQRLRHMVNDKYQVRTTGPVTQLTGQPIKGRKKGGGIRVGEMERDSLLAHGTAFLLQ 1062

Query: 1039 DRLHTCSDYHVADVCSLCGSVLTAT--------------FIHPQKRAIREIGGLPPARAP 1084
            DRL  CSDY  + +C  CG+ L+                 +  +K A R  G        
Sbjct: 1063 DRLLNCSDYTKSWICKECGTFLSTQPTVSAFASKKKGTGVVRCRKCATRAEGKFGGGEVW 1122

Query: 1085 KKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLG 1126
            +          +    VA+P V +YL  ELAAM IK+   +G
Sbjct: 1123 EDGKGQRWVGGEDTTVVAVPGVLKYLDVELAAMGIKLKYNVG 1164



 Score =  298 bits (764), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 165/421 (39%), Positives = 256/421 (60%), Gaps = 24/421 (5%)

Query: 38  CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
           CR+  ++Y GK+ A +E+  ++ G P    R + GQ P+ML + +CHLQ     +LV  K
Sbjct: 121 CRERHVTYRGKMSARMEYS-INNGDPKEFIR-DLGQLPLMLMSNKCHLQNNSPAQLVQNK 178

Query: 98  EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
           EE+ E+GGYF++NG+E++ R +++ ++N+PM+++R SF+ R   YT+  ++IR VR DQ+
Sbjct: 179 EESEELGGYFVVNGIEKIIRLLVVNRRNFPMAIIRPSFKGRGPAYTEFGMLIRSVRPDQT 238

Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
           S T  L+YL +G+V   F  +  E+L+P  ++LKALV+TND EIF  L      K     
Sbjct: 239 SQTNVLHYLNDGNVTFRFSWRKNEFLVPAMMILKALVETNDKEIFEGLVGTPGSK----- 293

Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
               +  +++RV+++L   +   L T+ +   ++GE F+ V+    + S Y V    +R 
Sbjct: 294 -GTDNTFLNDRVELLLRTYKAYGLYTKSKTRAYLGEKFRIVLGVPDTMSNYDVGTEFLRK 352

Query: 278 YIFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITI 330
            + VHL + N       DKF +L+FM +KL+SLV      DNPD++QNQEILL G L  +
Sbjct: 353 IVLVHLGNTNVTEAQDKDKFKMLLFMTRKLYSLVAGDCAGDNPDAVQNQEILLGGFLFGM 412

Query: 331 YLKEKLEDWLRKGKKL-----IQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
            +KE+LEDWL    ++     ++   ENN    +F     +K     N  +Q+G ++E  
Sbjct: 413 IIKERLEDWLHTSLRMALRDYVRRSPENNFVTPEFLKDFPVKICSRTN--EQVGGALEYF 470

Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSV--RKLLP 443
           + TG L + TGLDLQQ +G+TV AE++NFLRFI+ FR +HRG+ FA L+TT+V   KLL 
Sbjct: 471 MSTGNLVSPTGLDLQQTSGFTVVAEKINFLRFIAHFRMIHRGSFFAQLKTTTVPLPKLLS 530

Query: 444 E 444
           E
Sbjct: 531 E 531


>gi|355712704|gb|AES04438.1| polymerase I polypeptide B, 128kDa [Mustela putorius furo]
          Length = 496

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 259/503 (51%), Positives = 328/503 (65%), Gaps = 28/503 (5%)

Query: 627  ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQ 686
             TH+E+ P  +LSV+AN  P+SDHNQSPRNMYQCQM KQTMGF +   + R+D KLY LQ
Sbjct: 18   TTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQARSDNKLYRLQ 77

Query: 687  TPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQ 746
            TPQ+P+VR   Y  Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG  HG +Y+
Sbjct: 78   TPQSPLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYK 137

Query: 747  TETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN 806
            +E IDLS+   + D       +  D + L   +D DGLP++G  +  G+PY    +  T 
Sbjct: 138  SEFIDLSEKIKQGDDSLVFGVKPGDPRILQK-LDDDGLPFIGAQLQYGDPYYGYLNLNTG 196

Query: 807  SWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCS 865
                   K  E+  VD + V   ++ N   K   I  R  RNP IGDKF+SRHGQKG+ S
Sbjct: 197  ESFVMYYKSKENCIVDNIKVCSNDTGNGKFKCICITMRVPRNPTIGDKFASRHGQKGILS 256

Query: 866  QLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANS 925
            +LWP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+A K  +LHG   DATPF  S
Sbjct: 257  RLWPVEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFTFS 315

Query: 926  VKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRL 985
                       E  S ++  GE+L+  G+N++G E LYSG+ G EL  +IFIG VYYQRL
Sbjct: 316  -----------EENSALEYFGELLKAGGYNFYGTERLYSGISGLELEADIFIGVVYYQRL 364

Query: 986  RHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCS 1045
            RHMVSDKFQVR+TG  D++T QPI GR   GGIRFGEMERD+LLAHG ++LLHDRL  CS
Sbjct: 365  RHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCS 424

Query: 1046 DYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP---KKVTCHACQTSKGMETVA 1102
            D  VA VC  CGS+L+     P           PP+ +    +K  C  C  S  ++TV+
Sbjct: 425  DRSVAHVCVKCGSLLSPLLEKP-----------PPSWSATRNRKYNCTLCDRSDTIDTVS 473

Query: 1103 MPYVFRYLAAELAAMNIKITLQL 1125
            +PYVFRY  AELAAMNIK+ L +
Sbjct: 474  VPYVFRYFVAELAAMNIKVKLDV 496


>gi|307111256|gb|EFN59491.1| hypothetical protein CHLNCDRAFT_138110, partial [Chlorella
           variabilis]
          Length = 743

 Score =  506 bits (1302), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 281/757 (37%), Positives = 413/757 (54%), Gaps = 103/757 (13%)

Query: 12  LRELVRHHIESFDYMLDEGLSEMFDH---------------------------------- 37
           L  L + H++S+D+ L EG+  + D+                                  
Sbjct: 17  LEALAQPHVDSYDFFLGEGMQHVIDNMDGIEIEQPVSKTRHRFWFENPSVSRPIREDSGA 76

Query: 38  ------------CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHL 85
                       CR+A+ +Y      D+ +Q    G P  R     G  PVMLK++ C+L
Sbjct: 77  AASGDQRLFPRECREARTTYKAPFTCDLVYQV--EGMPEQRLSKRLGGLPVMLKSKACYL 134

Query: 86  QGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDK 145
           +    ++LV+ KEE+ E GG FI NG+ER+ R  +L +++Y M++ R ++  R   +T+ 
Sbjct: 135 RNMTRRELVARKEESNEFGGTFICNGIERIIR--MLNRRHYIMALRRGAYHKRGPSFTEM 192

Query: 146 AVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHL 205
           A +IRCVR+D+SS+T + +YL +GS      ++  EY +P GIVLK  ++ +D E++  L
Sbjct: 193 ATLIRCVRQDESSLTNRCHYLADGSCVFALTIRRAEYFIPAGIVLKCFLEVSDRELYGKL 252

Query: 206 TCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSE 265
                       G+     V+ER +++L + +   L TR+ C++++G  F+  +D    +
Sbjct: 253 VGSV------AAGSGHQSFVAERAELLLRQAKQFGLHTRVHCVEYLGRLFRATLDAPDRK 306

Query: 266 SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPG 325
           + Y V E ++RD +F+HL+   DK  L + ML KL++L D     DNPD+L + E+LLPG
Sbjct: 307 TDYQVGEQLLRDLLFIHLDQPADKLQLTVQMLLKLYALADRQCGEDNPDALTHHEVLLPG 366

Query: 326 HLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
           HL+   L+E+LE  L   ++ ++ +++   +  +  +   I+K  E+   + +G   E +
Sbjct: 367 HLLLKVLREQLETALEAFRQQVRRDLDTRPEVVNLQDEQYIRKTAER--MQDVGAKFEYL 424

Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
           L TG L +++GLDL Q  GY            +S FR++HRGA FA LRTT+VRKLLPES
Sbjct: 425 LNTGNLVSRSGLDLSQSTGY------------LSHFRSIHRGAYFAELRTTTVRKLLPES 472

Query: 446 WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
           WGFLCPVHTPDG PCGLLNH T+ CRV + ++S       + +  +   VL G+GM+P  
Sbjct: 473 WGFLCPVHTPDGSPCGLLNHFTAACRVVT-HESEEPEEVLAAVTKASAGVLGGLGMVPVA 531

Query: 506 PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV-------------- 551
           P L     P  L V +DGRVVG + +S    +VAHLR +K ++ +               
Sbjct: 532 PNLPAPPTPGHLCVQVDGRVVGHVRASLAGAMVAHLRAIKAASLAAEEQLTPGATLVPLH 591

Query: 552 -----IPDDLEVGYVPLSLGGAYPGLYLFT-------SPPKFVRPVRNISLPSEESQNIE 599
                +P   EV ++P   G  YPG+++FT          + +R VR I+     S   E
Sbjct: 592 DEEMSVPSHAEVVHIPYERGAPYPGIFIFTQARTPGREAARMIRAVRQIA-----SGAAE 646

Query: 600 LIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQ 659
           +IG  EQ  M IR PDGG+GG +     TH E     MLSVVA+LTPYSD NQSPRNMYQ
Sbjct: 647 MIGSLEQNNMAIRMPDGGEGGTK-GLKFTHAEFATGSMLSVVASLTPYSDFNQSPRNMYQ 705

Query: 660 CQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTN 696
           CQMAKQTMG   QAL  R D K+Y +QTPQTPI RT 
Sbjct: 706 CQMAKQTMGTPAQALAHRTDNKMYRIQTPQTPIARTK 742


>gi|240972645|ref|XP_002401144.1| RNA polymerase II second largest subunit (RPB2), putative [Ixodes
            scapularis]
 gi|215490975|gb|EEC00616.1| RNA polymerase II second largest subunit (RPB2), putative [Ixodes
            scapularis]
          Length = 442

 Score =  506 bits (1302), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 257/500 (51%), Positives = 319/500 (63%), Gaps = 67/500 (13%)

Query: 627  ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQ 686
             TH+E+  T MLSV+ N+ PYSD NQSPRNMYQCQM KQTMG   QAL++R+D KLY +Q
Sbjct: 8    TTHQELRQTSMLSVLGNMIPYSDFNQSPRNMYQCQMGKQTMGTPCQALRYRSDNKLYRIQ 67

Query: 687  TPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQ 746
            TPQTP VR   Y  Y +D++PTGTNAIVAV++YTGYDMEDAM+LNKSSV+RG  HG +Y+
Sbjct: 68   TPQTPFVRPTAYDHYHMDDFPTGTNAIVAVISYTGYDMEDAMVLNKSSVERGFKHGCVYK 127

Query: 747  TETIDLSDDGNKVDRGQKL-FRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTT 805
            TE ++L        R   L F R    K L   +D DGLPY+G  +   +P CS      
Sbjct: 128  TELVNLRVLAGDTGRQTSLVFGRKATDKYLEGKVDLDGLPYIGVKVEQNDPVCS------ 181

Query: 806  NSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCS 865
                                                F + RNP+IGDKF+SRHGQKGVCS
Sbjct: 182  ------------------------------------FVNLRNPMIGDKFASRHGQKGVCS 205

Query: 866  QLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANS 925
            QLWP  +MPF+  +GM PD+I NPH FPSRMTI M++ES+A K  +LHG   DATPF  S
Sbjct: 206  QLWPIENMPFT-ESGMTPDIIFNPHGFPSRMTIGMMIESMAGKSATLHGFVHDATPFKFS 264

Query: 926  VKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRL 985
                       E++   +  GE+L+  G+NYHG E +YSGV G E+  +IF G VYYQRL
Sbjct: 265  -----------ENQPASEYFGELLKKAGYNYHGTERMYSGVDGREMEADIFFGVVYYQRL 313

Query: 986  RHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCS 1045
            RHMV+DK+QVR+TG +D +T QP+KGRKR GGIRFGEMERDSLLAHG+++LL DRL  CS
Sbjct: 314  RHMVADKYQVRTTGPVDTLTHQPVKGRKRAGGIRFGEMERDSLLAHGSSFLLQDRLFNCS 373

Query: 1046 DYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPY 1105
            D  +A VC  CGSVL+     P    +R            K  C ACQT   ++T++MPY
Sbjct: 374  DRSLAYVCRKCGSVLSPLIEKPDGDVVR------------KWVCPACQTGDFVDTISMPY 421

Query: 1106 VFRYLAAELAAMNIKITLQL 1125
            VFRYLAAELA +N+ I L +
Sbjct: 422  VFRYLAAELAGINMGIKLHI 441


>gi|299115649|emb|CBN75850.1| conserved unknown protein (Partial) [Ectocarpus siliculosus]
          Length = 1050

 Score =  502 bits (1293), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 301/802 (37%), Positives = 439/802 (54%), Gaps = 93/802 (11%)

Query: 38  CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
           CR+  ++Y G L+ D+ +Q  D    VVR +   G  PVM+ +RRCHL+G    +L   +
Sbjct: 86  CRERGLTYHGALLVDLCYQVGDG--DVVRTQKRAGDCPVMVGSRRCHLRGHGPARLTRGR 143

Query: 98  EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
           EEA EMGGYFI+ G+ERV R + +PK+NY  ++ R +F+DR +GY++K V++RC RKDQS
Sbjct: 144 EEAGEMGGYFIVRGIERVIRLLQVPKRNYAHAISRGTFKDRGQGYSEKGVMMRCARKDQS 203

Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
           ++T+ L+Y+  G   L F ++ +E+L+PV I+LKAL DT+D EI   +           +
Sbjct: 204 TLTVTLHYISTGGATLRFSVRKQEFLVPVVIILKALRDTSDREIHERVL----------Q 253

Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
           G   +  ++  V+++L + +   L +R++ L  +G  F+ V+    + +   + + VI  
Sbjct: 254 GQKDNTFLAAHVEVLLRDGKRWGLHSRMESLAFLGSTFRTVLQAPATATDIELGKKVIDR 313

Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
                      ++N     L+ LF                   + LP     I    +++
Sbjct: 314 VETGWCWPWRCRWNWPRCCLRALF-------------------VSLPAVRQLIGRDARMD 354

Query: 338 DWLRKGKKLIQ-DEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
               + K ++Q  + ++  K  D F  A             +G  + T L TG + + +G
Sbjct: 355 ----QAKAVMQVRDAKHMAKYLDRFGSA-------------VGQGMSTFLSTGNVISTSG 397

Query: 397 LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
           LDL Q +G+T+ AER+NFLR+++ FR+VHRG  F  ++TT+VRKLLPESWGFLCPVHTPD
Sbjct: 398 LDLMQVSGFTIVAERINFLRYLAHFRSVHRGQFFTTMKTTAVRKLLPESWGFLCPVHTPD 457

Query: 457 GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKL---VKSGP 513
           G PCGLLNH+ + C+V       G     ++   S+  +L+ +G+ P+         S P
Sbjct: 458 GSPCGLLNHLATACKVVC---GGGKAPPPAESPLSLESLLVRLGVAPAGTGAGDGALSLP 514

Query: 514 PAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKV------------SAASVIPDDLEVGYV 561
            + L VL+DGRVVG    + +++  A LRRLKV                 +   LEVG+V
Sbjct: 515 SSFLPVLVDGRVVGGGSEATLKRAAAELRRLKVVAAAGGGAAGKGGGGGGVDPTLEVGWV 574

Query: 562 PLSLGGA--YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDG 619
           P   GGA  YPGL+L +   +  RPV ++     +S  +E IGP  Q FMEI C    D 
Sbjct: 575 PPMKGGAGPYPGLFLNSEGARMCRPVLHL-----QSGRMEWIGPMAQQFMEIACL--ADD 627

Query: 620 GRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALK-FRA 678
            R      TH E+ PT MLS+VA+LTP+SD+NQSPRNMYQCQM KQTMG     L   R 
Sbjct: 628 VRPGL--TTHRELDPTNMLSLVASLTPFSDYNQSPRNMYQCQMGKQTMGTPAHCLTPHRT 685

Query: 679 DQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRG 738
           D K+Y +  PQ  IV+T  + +Y +D+YP GTNA+VAV++YTG+DMEDAMILNKSS +RG
Sbjct: 686 DNKMYKVLFPQAAIVQTRRHGEYQLDDYPQGTNAVVAVISYTGFDMEDAMILNKSSFERG 745

Query: 739 MCHGQIYQTETIDLSDDGNK--------------VDRGQKLFRRNKDAKSLHSVIDSDGL 784
             H  + +T  +DL D   K              V  G         A  LH  +  DGL
Sbjct: 746 FGHASVLKTFAVDLRDVAGKGAGPAAVARLKFCNVKPGSVGAGGAAAATKLHEGLGWDGL 805

Query: 785 PYVGQMIHPGEPYCSIYDKTTN 806
           P VG  + PG+    + D+ T 
Sbjct: 806 PMVGSWVQPGDALYCVVDELTG 827



 Score =  209 bits (533), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 101/167 (60%), Positives = 123/167 (73%), Gaps = 11/167 (6%)

Query: 897  TIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNY 956
            TI ML+ES+A K G++HG + DATPFA             E   ++D  GE LR+ G+ Y
Sbjct: 834  TIGMLIESMAGKSGAMHGTYQDATPFA-----------FHEEDRVIDHFGEQLRSAGYAY 882

Query: 957  HGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGG 1016
            HG E LYSGV GT +  +IFIG VYYQRLRHMVSDK QVR+TG ++Q+TRQPIKGRK  G
Sbjct: 883  HGSEPLYSGVTGTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKNKG 942

Query: 1017 GIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTAT 1063
            G+R GEMERD+LL+HGAA+LLHDRL  CSD HVA VCS CGS+L+ +
Sbjct: 943  GVRLGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCSACGSLLSTS 989


>gi|78190671|gb|ABB29657.1| RNA polymerase I second largest subunit [Suberites fuscus]
          Length = 536

 Score =  499 bits (1286), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 269/573 (46%), Positives = 355/573 (61%), Gaps = 45/573 (7%)

Query: 456  DGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP---SLPKLVKSG 512
            DG PCGLLNH+ + C+V +   +             + R+L+ +GM P    LP      
Sbjct: 1    DGAPCGLLNHLAADCQVTTSVPNT----------IHLPRLLVSLGMTPLGSPLPTSHTHK 50

Query: 513  PPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGL 572
                L V+LDGR++G + + + + +   LR LK      +P  LE+G VP    G +PGL
Sbjct: 51   DHHPLPVVLDGRILGEVEALQAKDLAVKLRTLKCWGKEKVPPTLEIGLVPPLTDGQFPGL 110

Query: 573  YLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEE 631
            +LF++  + +RPVRN++  S E     LIG FEQV+M+I   P+    G       TH E
Sbjct: 111  FLFSTSARMMRPVRNLATNSRE-----LIGSFEQVYMDIAVIPEEAHQGH-----TTHLE 160

Query: 632  IHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTP 691
            +    M S +A LTPYSD NQSPRNMYQCQMAKQTMG  +Q+  +R D KLY LQ+PQ P
Sbjct: 161  LDEGIMFSAIATLTPYSDFNQSPRNMYQCQMAKQTMGTPLQSFPYRMDSKLYRLQSPQAP 220

Query: 692  IVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETID 751
            +VRT+TY  Y +DEYP GTNAIVAV++YTGYDMEDAMILNK+SV+RG  H  +Y++E I 
Sbjct: 221  MVRTSTYNHYSMDEYPLGTNAIVAVISYTGYDMEDAMILNKASVERGFKHANVYKSEVIS 280

Query: 752  LSDDGNKVDRGQKLF---RRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSW 808
            +S   ++  R  K+F     +K+A+ L    D DG P +G ++  G+PY S  D  T   
Sbjct: 281  ISSPSDR-GRPSKMFGILPGDKEAEKL----DQDGFPPIGTLLQEGDPYYSCIDLDTGRS 335

Query: 809  RTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQL 867
            +    K SE  FVD + +    + + P Q+A I+ R  RNPIIGDKF+SR GQKG+CSQ 
Sbjct: 336  KVARYKSSEPAFVDQIKLLGNETGDSPLQRAFIKLRICRNPIIGDKFASRAGQKGICSQK 395

Query: 868  WPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVK 927
            WP  +MPF+  +GM PD+I NPH FPSRMTI M++E +A K  +LHG   D TPF  S  
Sbjct: 396  WPSENMPFT-ESGMVPDIIFNPHGFPSRMTIGMMVEMMAGKSAALHGLCHDCTPFKFS-- 452

Query: 928  KTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRH 987
                     E    VD  G++L   G+NY G E LYSG+ G E   +IF+G VYYQRLRH
Sbjct: 453  ---------EDNPAVDHFGKLLVKAGYNYFGNERLYSGIDGREFEADIFLGVVYYQRLRH 503

Query: 988  MVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRF 1020
            MVSDKFQVR+TG +D +T QP++GR+R GGIRF
Sbjct: 504  MVSDKFQVRTTGPIDILTHQPVQGRRRAGGIRF 536


>gi|347829559|emb|CCD45256.1| similar to POLR1B protein [Botryotinia fuckeliana]
          Length = 556

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 263/588 (44%), Positives = 346/588 (58%), Gaps = 75/588 (12%)

Query: 581  FVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSV 640
             VRPV+ + L  E+      +GP EQ FM I   +        +   TH E  PT +LS+
Sbjct: 1    MVRPVKYLPLDKED-----FVGPLEQPFMSIAVTEQ----EIESGEHTHVEFDPTHILSI 51

Query: 641  VANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTK 700
            +AN+TP+SD NQSPRNMYQCQM KQ+MG    A+++R D K Y LQT QTPIVR   + +
Sbjct: 52   LANMTPFSDFNQSPRNMYQCQMGKQSMGTPGTAIRYRTDNKAYRLQTGQTPIVRAPLHNE 111

Query: 701  YGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVD 760
            YG D +P G N++VAV++YTGYDM+DAMI+NKS+ +RG  HG IY+T+  +L ++G+K  
Sbjct: 112  YGFDNFPNGMNSVVAVISYTGYDMDDAMIINKSAHERGFGHGTIYKTKKYEL-EEGHKSR 170

Query: 761  RG---QKLFRRNKDA---KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR- 813
                 +KLF             + ID DGLP++G+M+  G+   + +   T S   N + 
Sbjct: 171  SAKNIKKLFGFAPGGLVKAEWKAAIDEDGLPFIGRMVQNGDLIAAWH---TVSMDENGKY 227

Query: 814  ------------KGSESVFVDYVA-VDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQ 860
                        K +E  F++ V  +  +N     Q  +++ R  R+P+IGDKFSSRHGQ
Sbjct: 228  VNRDGQTHFEKYKETEIAFIEEVRLIGNENGIEPCQAISVKLRIPRSPVIGDKFSSRHGQ 287

Query: 861  KGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDAT 920
            KGVCSQ WP +DMPF+  +G++PD IINPHAFPSRMTI M +ES+A K G+LHG   D+T
Sbjct: 288  KGVCSQKWPAVDMPFT-ESGIQPDTIINPHAFPSRMTIGMFVESLAGKAGALHGLAQDST 346

Query: 921  PFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPV 980
            PF             DE     D  G  L   G+NY+G E +YSG+ G EL  +I+IG V
Sbjct: 347  PFK-----------FDEEHKAGDYFGHQLMKAGYNYYGNEPMYSGITGEELHADIYIGVV 395

Query: 981  YYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDR 1040
            YYQRLRHMV+DK+QVR+TG + Q+T QPIKGRK+GGGIR GEMERDSLLAHG A+LL DR
Sbjct: 396  YYQRLRHMVNDKYQVRTTGPVTQLTGQPIKGRKKGGGIRVGEMERDSLLAHGTAFLLQDR 455

Query: 1041 LHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTS----- 1095
            L  CSDY  + +C  CG+ L+     P   A          +    V C  C TS     
Sbjct: 456  LLNCSDYTKSWICKECGTFLST---QPTVSAFAS-----KKKGTGVVRCRKCATSASGKL 507

Query: 1096 ---------KGME--------TVAMPYVFRYLAAELAAMNIKITLQLG 1126
                     KG           VA+P V +YL  ELAAM IK+   +G
Sbjct: 508  GGGEVWEDGKGQRWVGGEDTTVVAVPGVLKYLDVELAAMGIKLKYNVG 555


>gi|147800491|emb|CAN62043.1| hypothetical protein VITISV_038847 [Vitis vinifera]
          Length = 416

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 240/405 (59%), Positives = 288/405 (71%), Gaps = 67/405 (16%)

Query: 8   DFEPLRELVRHHIESFDYMLDEGLSEMFD------------------------------- 36
           D+EPLREL +HHI+SFD++++ GL  +                                 
Sbjct: 7   DYEPLRELFQHHIDSFDHLVEFGLETLLMSVKPVESLFITHNGVFFLTRIALWFGQPELY 66

Query: 37  ------------------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVML 78
                              CRQAKISY+GKL+ADV FQY      V+RE+FN GQFP+ML
Sbjct: 67  PPQKERSARTMRDALYPFECRQAKISYSGKLLADVCFQY--GNGVVIREKFNLGQFPMML 124

Query: 79  KTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDR 138
           K++ CHL+GAD QKLVS KEE++EMGGYFILNGLERV R +ILPK+NYPMSMVR+SFRDR
Sbjct: 125 KSKLCHLRGADPQKLVSCKEESSEMGGYFILNGLERVVRLLILPKRNYPMSMVRNSFRDR 184

Query: 139 REGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTND 198
           REGYTDKAVVIRCVR+DQS+VT+KLYYL NGS RLGFW+QG+EYLLPVG+VLKAL+DT D
Sbjct: 185 REGYTDKAVVIRCVREDQSAVTVKLYYLRNGSARLGFWIQGREYLLPVGVVLKALIDTTD 244

Query: 199 LEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV 258
            EI+  LTCCY EKY+  KGAVG+ LV ERVKIIL EV+DLSL TR QCLQHIGEHFQ V
Sbjct: 245 HEIYESLTCCYSEKYEGGKGAVGTQLVGERVKIILDEVRDLSLFTRHQCLQHIGEHFQLV 304

Query: 259 IDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFM----------------LQKLFS 302
           +DGL++ESY  VA+ V+R+YIFVHL++N DKFNLL+ +                + KLFS
Sbjct: 305 MDGLENESYSIVADAVLREYIFVHLDNNYDKFNLLMLVIVSFKFLSYPYLIVATIVKLFS 364

Query: 303 LVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLI 347
           L+D TSV DNPD LQNQE+LLPGHLITIYLK ++   L  GK  +
Sbjct: 365 LIDQTSVPDNPDVLQNQEVLLPGHLITIYLKVQILQLLSLGKMFL 409


>gi|449299920|gb|EMC95933.1| hypothetical protein BAUCODRAFT_34698 [Baudoinia compniacensis UAMH
           10762]
          Length = 1702

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 260/647 (40%), Positives = 382/647 (59%), Gaps = 61/647 (9%)

Query: 37  HCRQAKISYTGKLMADVEFQYLDA-GSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
            CR+  ++Y G+     E++  D      VRE   FGQ P+ML++ RCHL+G   ++LV 
Sbjct: 124 ECRERHVTYRGRFRGRFEYRVNDGQWKESVRE---FGQLPIMLRSNRCHLEGLSPKQLVD 180

Query: 96  LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
            +EE  E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R   YT   + IR VR D
Sbjct: 181 CREETEELGGYFIVNGIEKLIRMLIVNRRNFPMAIIRPSFENRGPTYTKYGIQIRSVRPD 240

Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
           Q+S T  L+YL +G+V   F  +  EYL+PV ++LKALV+T D EI+  +    D K   
Sbjct: 241 QTSQTNVLHYLSDGNVTFRFSWRKNEYLVPVVMILKALVETTDREIYEGVVGPADTK--- 297

Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
             G      V++RV+++L   Q   L  R Q   ++G  F+ V+      S  +     +
Sbjct: 298 --GLEAKQFVTDRVELLLRTYQAYQLYNRDQTKAYLGSKFRIVLGVPDDMSDESAGAEFL 355

Query: 276 RDYIFVHLN-------DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
           R  +  HL        +N DK  +L+FM++KL++L +   + DNPD++ +QEILLPG L 
Sbjct: 356 RKIVLPHLGCFDVTEANNEDKARMLLFMIRKLYALAEGECMVDNPDTVSSQEILLPGALY 415

Query: 329 TIYLKEKLEDWLRKGKKLIQDEIENN------GKKF--DFFNLANIKKVMEKNPSKQIGT 380
            + +KE+LE+WL      ++D   NN       ++F  DF     + KV+ K  ++ +G 
Sbjct: 416 GMIIKERLEEWLTSIGAQLRDWSRNNQYPSFTSREFERDF-----MSKVLRKT-NENLGQ 469

Query: 381 SIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRK 440
           +++  L TG L + TGLDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRK
Sbjct: 470 ALDYFLSTGNLVSPTGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAELKTTTVRK 529

Query: 441 LLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVG 500
           LLPESWGFLCPVHTPDG PCGLLNH++  C+VA+           S   ++I  ++  +G
Sbjct: 530 LLPESWGFLCPVHTPDGAPCGLLNHLSHKCKVATE----------SADVSNIPHLIAQLG 579

Query: 501 MIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGY 560
           ++ S    +       + V LDGR++G     + + +   LR  KV  +  +P DLEVG+
Sbjct: 580 VVSSSAASLS----DSVVVQLDGRILGFCTPKQAKVIGDTLRYWKVEGSHGVPLDLEVGF 635

Query: 561 VPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPD----G 616
           +P S GG YPG+Y+F+SP + +RPV+ + L        + +G FEQ FM I C +     
Sbjct: 636 IPSSNGGQYPGVYMFSSPARMLRPVKYLPL-----DKTDYVGAFEQPFMSIACTEPEIVS 690

Query: 617 GDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMA 663
           GD        +TH E  PT +LS+VAN TP+ D NQSPRNMYQC  A
Sbjct: 691 GD--------STHVEYDPTNILSIVANQTPFPDFNQSPRNMYQCLSA 729



 Score =  434 bits (1116), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 240/513 (46%), Positives = 312/513 (60%), Gaps = 45/513 (8%)

Query: 649  DHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPT 708
            D  Q P     CQM KQTMG    ALK+R D K Y LQT QTP+VR   Y +YG+D +P 
Sbjct: 1199 DAAQKPFFTGNCQMGKQTMGTPGTALKYRTDNKTYRLQTGQTPVVRPPLYNEYGLDNFPN 1258

Query: 709  GTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DRGQKLFR 767
            GTNA+VAV+AYTGYDM+DAMILNKS+ +RG  HG +Y+T+ IDLS+D  +   RG K+  
Sbjct: 1259 GTNAVVAVIAYTGYDMDDAMILNKSAHERGFGHGTVYKTKKIDLSEDSKQTRGRGSKVVS 1318

Query: 768  RNKDA------KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSW-------RT 810
                A          + +D DG   VG  +  G+     +   +D + N +         
Sbjct: 1319 MFGFAPGGLMKAQWKNTLDDDGFAAVGMKVKEGDIIAASHSVTWDPSANEYVNRDGITHL 1378

Query: 811  NSRKGSESVFVDYVAV-DMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQLW 868
            +  K  E  FV+ + +   + S N P +A +IRFR  R+P+IGDKFSSRHGQKGVCSQ W
Sbjct: 1379 HRYKEPEEAFVEEIKIIGSELSDNTPSQAVSIRFRIPRSPVIGDKFSSRHGQKGVCSQKW 1438

Query: 869  PDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKK 928
            P I+MPF+  +G++PD+IINPHAFPSRMTI M +ES+A K G+LHG   D+TPF    K 
Sbjct: 1439 PSINMPFT-ESGIQPDIIINPHAFPSRMTIGMFVESLAGKSGALHGLAQDSTPFKFKDK- 1496

Query: 929  TNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHM 988
                    E ++ V+  G  L+  G+NYHG E +YSG+ G EL  +I++G VYYQRLRHM
Sbjct: 1497 --------EGETAVEYFGHQLKRAGYNYHGNEPMYSGITGEELAADIYVGVVYYQRLRHM 1548

Query: 989  VSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYH 1048
            V+DKFQVR+TG +  +T QPIKGR +GGGIR GEMERD+LLAHG A+LL DRL  CSDY 
Sbjct: 1549 VNDKFQVRTTGPVTPLTGQPIKGRAKGGGIRVGEMERDALLAHGTAFLLQDRLMNCSDYT 1608

Query: 1049 VADVCSLCGSVLTATFIHPQ--KRAIREIGGLPPARAPKKVT-----CHACQTSKGME-- 1099
             A +C  CGS L+      Q  +R + E G     R  ++ T         +  KG +  
Sbjct: 1609 KAWICKACGSFLSTQPSAGQYSRRRMGEGGRFRCKRCSRRATNVDPRSQCWEDRKGQKWF 1668

Query: 1100 ------TVAMPYVFRYLAAELAAMNIKITLQLG 1126
                   VA+P V RYL  ELAAM I++   +G
Sbjct: 1669 GGDDVTQVAVPGVLRYLDVELAAMGIRLKFTVG 1701


>gi|10438131|dbj|BAB15175.1| unnamed protein product [Homo sapiens]
          Length = 459

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 231/438 (52%), Positives = 292/438 (66%), Gaps = 14/438 (3%)

Query: 627  ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQ 686
             TH+E+ P  +LSV+AN  P+SD NQSPRNMYQCQM KQTMGF +   + R+D KLY LQ
Sbjct: 15   TTHQELFPHSLLSVIANFIPFSDLNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQ 74

Query: 687  TPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQ 746
            TPQ+P+VR + Y  Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG  HG +Y+
Sbjct: 75   TPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYK 134

Query: 747  TETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN 806
            +E IDLS+   + D       +  D + L   +D DGLP++G  +  G+PY S  +  T 
Sbjct: 135  SEFIDLSEKIKQGDSSLVFGIKPGDPRVLQK-LDDDGLPFIGAKLQYGDPYYSYLNLNTG 193

Query: 807  SWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCS 865
                   K  E+  VD + V   ++ +   K   I  R  RNP IGDKF+SRHGQKG+ S
Sbjct: 194  ESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILS 253

Query: 866  QLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANS 925
            +LWP  DMPF+  +GM PD++ NPH FPSRMTI ML+ES+A K  +LHG   DATPF  S
Sbjct: 254  RLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFS 312

Query: 926  VKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRL 985
                       E  S ++  GEML+  G+N++G E LYSG+ G EL  +IFIG VYYQRL
Sbjct: 313  -----------EENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRL 361

Query: 986  RHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCS 1045
            RHMVSDKFQVR+TG  D++T QPI GR   GGIRFGEMERD+LLAHG ++LLHDRL  CS
Sbjct: 362  RHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCS 421

Query: 1046 DYHVADVCSLCGSVLTAT 1063
            D  VA VC +    L+  
Sbjct: 422  DRSVAHVCEVWQFTLSTV 439


>gi|332028507|gb|EGI68546.1| DNA-directed RNA polymerase I subunit RPA2 [Acromyrmex echinatior]
          Length = 764

 Score =  454 bits (1168), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 258/691 (37%), Positives = 401/691 (58%), Gaps = 50/691 (7%)

Query: 38  CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
           CRQ   +Y GK++A + +  ++       E+ + G+ P+M+K+ RC+L   + ++L++  
Sbjct: 95  CRQRGSTYKGKIIARLGWS-VNGKEQEPLEK-DLGEVPIMVKSNRCNLNNMNPEELIAHG 152

Query: 98  EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
           E   E GGYFI+ GLER+ R +I+ ++NYP+++ R +++ R + +++  +++R VR+D S
Sbjct: 153 EHEQEWGGYFIIRGLERLIRMLIMTRRNYPIAVKRPTWKGRGDHFSELGILLRSVREDNS 212

Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTC-CYDEKYKKE 216
           S+   L+++ +GS +L F  +   Y +P+ ++LK L+D  DL I+  L   C D+ Y   
Sbjct: 213 SINNTLHFVTDGSAKLAFTYKKATYFVPLILILKCLIDVTDLYIYKALIAGCEDDLY--- 269

Query: 217 KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESY-YAVAETVI 275
                    +  +  +L  V +  L    QC  +IG+ F+     L +++    V + +I
Sbjct: 270 --------YNNSIINMLRAVHEEGLHWHEQCKAYIGKMFKVKFSELPTDATDIDVCDYII 321

Query: 276 RDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEK 335
           +  I +HL++  DKF+LL+FM +KLF+L ++    +  D++  QE LL GHL    LKEK
Sbjct: 322 KYCISIHLDEPIDKFHLLVFMTKKLFTLANNKCAVEGADAVMMQECLLGGHLYLQVLKEK 381

Query: 336 LEDWL--RKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLAT 393
           L  WL   K   L +D+   N        + N+ K         I + +E  L TG + +
Sbjct: 382 LYSWLVGLKHHILKRDKSAGNRYSLSIQEMLNVTKF-----RSNIDSQMEYFLSTGSVRS 436

Query: 394 QTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVH 453
            +GL L Q  G T+  E +N +R++S FRA+HRGA F  +RTT  R+LLP++WGF+CP+H
Sbjct: 437 SSGLGLMQTTGLTIVVENINRMRYMSHFRAIHRGAFFQEMRTTEARQLLPDAWGFICPIH 496

Query: 454 TPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP-SLPKLVKSG 512
           TPDG PCGLLNH+T  C +  + D         K++ +I  VL+ +GMIP S+    K+ 
Sbjct: 497 TPDGAPCGLLNHLTMNCIITKHAD--------PKLKAAIPAVLVDLGMIPLSIADDWKNS 548

Query: 513 PPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVP-LSLGGAYPG 571
                +V+LDG+++G+I    I KVV  LR LK+ +   IP  LE+ +VP  ++   YPG
Sbjct: 549 ----YNVMLDGKLIGLIEDKIINKVVYKLRLLKIKSRE-IPSTLEIAFVPKKNVPAQYPG 603

Query: 572 LYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC--PDGGDGGRRNAFPATH 629
           L+LFT+  + +RPV N+++     Q IELIG FEQ++MEI C  P     G       TH
Sbjct: 604 LFLFTNAARMMRPVINLAM-----QKIELIGTFEQIYMEI-CVNPQEAYEGL-----TTH 652

Query: 630 EEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQ 689
           +EI  T + S +ANL P  D NQSPRNMYQCQM KQTM       + ++  K+Y LQTP 
Sbjct: 653 QEISQTTIFSNLANLIPLPDCNQSPRNMYQCQMGKQTMATPCHNWQQQSQTKMYRLQTPA 712

Query: 690 TPIVRTNTYTKYGIDEYPTGTNAIVAVLAYT 720
           TP+ R   Y    +D++  GTNAI+AV+AYT
Sbjct: 713 TPLFRPVHYDNINMDDFAMGTNAIIAVIAYT 743


>gi|109104775|ref|XP_001114787.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like, partial
            [Macaca mulatta]
          Length = 449

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 235/469 (50%), Positives = 302/469 (64%), Gaps = 28/469 (5%)

Query: 661  QMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYT 720
            ++ KQTMGF +   + R+D KLY LQTPQ+P+VR + Y  Y +D YP GTNAIVAV++YT
Sbjct: 4    RVGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYT 63

Query: 721  GYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVID 780
            GYDMEDAMI+NK+S +RG  HG +Y++E IDLS+   + D       +  D + L   +D
Sbjct: 64   GYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRILQK-LD 122

Query: 781  SDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-N 839
             DGLP++G  +  G+PY S  +  T        K  E+  VD + V   ++ +   K   
Sbjct: 123  DDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVC 182

Query: 840  IRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIA 899
            I  R  RNP IGDKF+SRHGQKG+ S+LWP  DMPF+  +GM PD++ NPH FPSRMTI 
Sbjct: 183  ITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTIG 241

Query: 900  MLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGV 959
            ML+ES+A K  +LHG   DATPF  S           E  S ++  GEML+  G+N++G 
Sbjct: 242  MLIESMAGKSAALHGLCHDATPFIFS-----------EENSALEYFGEMLKAAGYNFYGT 290

Query: 960  EVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIR 1019
            E LYSG+ G EL  +IFIG VYYQRLRHMVSDKFQVR+TG  D++T QPI GR   GGIR
Sbjct: 291  ERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIR 350

Query: 1020 FGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLP 1079
            FGEMERD+LLAHG ++LLHDRL  CSD  VA VC  CGS+L+     P           P
Sbjct: 351  FGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKP-----------P 399

Query: 1080 PARAP---KKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
            P+ +    +K  C  C  S  ++TV++PYVFRY  AELAAMNIK+ L +
Sbjct: 400  PSWSAMRNRKYNCTLCNRSDTIDTVSVPYVFRYFVAELAAMNIKVKLDV 448


>gi|221481595|gb|EEE19977.1| DNA-directed RNA polymerase I, beta subunit, putative [Toxoplasma
            gondii GT1]
          Length = 1385

 Score =  451 bits (1160), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 245/542 (45%), Positives = 322/542 (59%), Gaps = 57/542 (10%)

Query: 631  EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQT 690
            E+  +  LS+ A+LTPYS HNQSPRN+YQCQM KQTMG    ++ FR D K Y L TPQ 
Sbjct: 831  ELKSSAFLSIAASLTPYSHHNQSPRNIYQCQMLKQTMGTPFHSIPFRHDNKAYRLITPQR 890

Query: 691  PIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETI 750
            P+VRT  Y ++  D+YP+G NA+VAV+ YTG+DMEDAMILNK S++RG  HG +Y+++ I
Sbjct: 891  PLVRTEDYRRFDFDDYPSGVNAVVAVMCYTGFDMEDAMILNKGSMERGAFHGCVYKSKVI 950

Query: 751  DLSDDGNKVDR-GQKLFRR-NKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT---- 804
            D +    +     Q  F   N+  +   + +D DG P +G  I  G  YC +   +    
Sbjct: 951  DAAPASARAGAASQYTFGNVNEFGRKHIATLDGDGFPAIGAKIEKGNTYCRVQTSSSSSS 1010

Query: 805  -TNSWRTNSRKGSESVFVDYVAV---------DMKNSKNLPQKANIRFRHTRNPIIGDKF 854
              ++   ++ K  E+ +VD V            +  S     +A++R R  R P+IGDKF
Sbjct: 1011 FASNGIQHAYKDGETAYVDGVTFISPPDAAHERLAKSGLKGCRASLRLRCVRKPVIGDKF 1070

Query: 855  SSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHG 914
            +SRHGQKG+ S LWP  DMPF+  +G+ PD++ NPH FPSRMTI ML+ES+A K  ++HG
Sbjct: 1071 ASRHGQKGILSMLWPHEDMPFTE-SGLVPDILFNPHGFPSRMTIGMLIESMAGKAAAVHG 1129

Query: 915  KFMDATPF----------ANSVKKTNGDTG-----------------TDESKSLVDELGE 947
             + DATPF           N      G  G                  DE ++ VD  G+
Sbjct: 1130 AYQDATPFREFPPQSADGKNKWVDQGGYHGWVKRGERYRTPEEERQAQDEPETPVDYFGK 1189

Query: 948  MLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQ 1007
             L   G+ Y+G E LYSGVYG  LT  IF G +YYQRLRHMV+DK QVR+TG +D +T Q
Sbjct: 1190 ALMRAGYQYYGTEELYSGVYGVPLTAHIFTGLIYYQRLRHMVTDKHQVRATGPVDALTHQ 1249

Query: 1008 PIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHP 1067
            P+KGRKR GG+RFGEMERD+L++HGAA LL DRL  CSD H    C  CGS+LT + + P
Sbjct: 1250 PVKGRKRHGGVRFGEMERDALISHGAAALLQDRLLHCSDAHKTFCCPSCGSILTPSAV-P 1308

Query: 1068 QKRAIREIGGLPPARAPKKVT--CHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
              R  R  GG       K+    C  CQ       + +PYVFRYLA ELAAMN+ I L+L
Sbjct: 1309 NLRG-RTAGG-------KRAVPFCRVCQVP--CRLIMVPYVFRYLANELAAMNVTIRLKL 1358

Query: 1126 GD 1127
             +
Sbjct: 1359 AE 1360



 Score =  251 bits (640), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 197/614 (32%), Positives = 295/614 (48%), Gaps = 59/614 (9%)

Query: 37  HCRQAKISYTGKLMADVEFQYLDA-GSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
           HCR+A I+Y   L   V F   D      +++    G  P+M++++ C  +G    +L  
Sbjct: 147 HCREAHITYGAPL--KVSFVRSDRRDGAALKKEVVVGMAPLMVRSKLCSTRGMSPAELQR 204

Query: 96  LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
             E+  + GGYFI+NG ERV R V+  + N+P+++ R +F +R    T  AV++R  R D
Sbjct: 205 AGEDVDDGGGYFIINGNERVIRFVVQQRTNFPIALKRPAFANRDAFCTPYAVLLRSQRYD 264

Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNH--LTCCYDEKY 213
            +S +  L    +G       L  +EY     ++L+ L     L       L  C+D+  
Sbjct: 265 GTSTSNILLDTEDGRCTYRILLNRQEYFCGFFLLLRCLAGNLSLAQLKAKLLEGCWDD-- 322

Query: 214 KKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQC--LQHIGEHFQPVIDGL--QSESYYA 269
                A  +   S+ V+ +  +    + +  L+   L  +G  F   +  L     SY A
Sbjct: 323 -----AADATARSQLVEELWGQEATFADSDVLENRPLHQLGLLFWKAVHWLLRPGSSYEA 377

Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
               VIR ++  HL+  ++KF++ + M +KL  L      +++ DS   QE++LPG ++ 
Sbjct: 378 AGTYVIRHFVLPHLSSWSEKFDMALLMYKKLRLLKQGKISAESLDSFAYQEVVLPGQILA 437

Query: 330 IYLKEKLEDWLRKGKKLIQDEI---ENNGK-------KFDFFNLANIKKVMEKNPSKQIG 379
             LK+ L   L K +     EI   +N+G           FF+LA  +   E      I 
Sbjct: 438 SVLKDALFSCLAKIRLHYLQEIRMLKNSGNDPTAAIYSNKFFDLATDRCCPE------IA 491

Query: 380 TSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVR 439
             +   + TG + T T LDLQQ +G+TV A+RLN  RF+S FRAVHRG  F  ++TTSVR
Sbjct: 492 QKLSYFMATGNIRT-TQLDLQQLSGWTVTADRLNVHRFLSHFRAVHRGQFFTTMKTTSVR 550

Query: 440 KLLPESWGFLCPVHTPDGEPCGLLNHMT-STCRVASYYD--SRGNIRDFSKMRTSILRVL 496
           KLL E+WGFLCPVHTPDG PCGLL H+T S   VA   D  +R +IR F       + + 
Sbjct: 551 KLLGETWGFLCPVHTPDGAPCGLLLHLTQSAAPVALPPDRRARASIRLFLHKHGVCVDLE 610

Query: 497 IGVGMIPS--------LPKLVKSGPPAVLS---------VLLDGRVVGVIPSSEIEKVVA 539
              G+ PS          +    GP  V++         +++DG VV  +   +    + 
Sbjct: 611 GTSGLPPSDVGASARQAARPAVRGPTGVVAATSSASTFPLVVDGAVVCRLDRKDFAFWLE 670

Query: 540 HLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIE 599
             R LK   A       EV   P + GG    +++FT P + VRPVR+I     ES  IE
Sbjct: 671 TFRDLKSREAEDFKQHWEVVGFPHN-GGNLESIFIFTFPGRLVRPVRHI-----ESGRIE 724

Query: 600 LIGPFEQVFMEIRC 613
            IGP  Q +  I C
Sbjct: 725 YIGPLMQPWAAIAC 738


>gi|221504639|gb|EEE30312.1| DNA-directed RNA polymerase I, beta subunit, putative [Toxoplasma
            gondii VEG]
          Length = 1388

 Score =  451 bits (1160), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 245/542 (45%), Positives = 321/542 (59%), Gaps = 57/542 (10%)

Query: 631  EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQT 690
            E+  +  LS+ A+LTPYS HNQSPRN+YQCQM KQTMG    ++ FR D K Y L TPQ 
Sbjct: 834  ELKSSAFLSIAASLTPYSHHNQSPRNIYQCQMLKQTMGTPFHSIPFRHDNKAYRLITPQR 893

Query: 691  PIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETI 750
            P+VRT  Y ++  D+YP+G NA+VAV+ YTG+DMEDAMILNK S++RG  HG +Y+++ I
Sbjct: 894  PLVRTEDYRRFDFDDYPSGVNAVVAVMCYTGFDMEDAMILNKGSMERGAFHGCVYKSKVI 953

Query: 751  DLSDDGNKVDR-GQKLFRRNKDAKSLH-SVIDSDGLPYVGQMIHPGEPYCSIYDKT---- 804
            D +    +     Q  F    +    H + +D DG P +G  I  G  YC +   +    
Sbjct: 954  DAAPASARAGAASQYTFGNVNEFGRKHIATLDGDGFPAIGAKIEKGNTYCRVQTSSSSSS 1013

Query: 805  -TNSWRTNSRKGSESVFVDYVAV---------DMKNSKNLPQKANIRFRHTRNPIIGDKF 854
              ++   ++ K  E+ +VD V            +  S     +A++R R  R P+IGDKF
Sbjct: 1014 FASNGIQHAYKDGETAYVDGVTFISPPDAAHERLAKSGLKGCRASLRLRCVRKPVIGDKF 1073

Query: 855  SSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHG 914
            +SRHGQKG+ S LWP  DMPF+  +G+ PD++ NPH FPSRMTI ML+ES+A K  ++HG
Sbjct: 1074 ASRHGQKGILSMLWPHEDMPFTE-SGLVPDILFNPHGFPSRMTIGMLIESMAGKAAAVHG 1132

Query: 915  KFMDATPF----------ANSVKKTNGDTG-----------------TDESKSLVDELGE 947
             + DATPF           N      G  G                  DE ++ VD  G+
Sbjct: 1133 AYQDATPFREFPPQSADGKNKWVDQGGYHGWVKRGERYRTPEEERQAQDEPETPVDYFGK 1192

Query: 948  MLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQ 1007
             L   G+ Y+G E LYSGVYG  LT  IF G +YYQRLRHMV+DK QVR+TG +D +T Q
Sbjct: 1193 ALMRAGYQYYGTEELYSGVYGVPLTAHIFTGLIYYQRLRHMVTDKHQVRATGPVDALTHQ 1252

Query: 1008 PIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHP 1067
            P+KGRKR GG+RFGEMERD+L++HGAA LL DRL  CSD H    C  CGS+LT + + P
Sbjct: 1253 PVKGRKRHGGVRFGEMERDALISHGAAALLQDRLLHCSDAHKTFCCPSCGSILTPSAV-P 1311

Query: 1068 QKRAIREIGGLPPARAPKKVT--CHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
              R  R  GG       K+    C  CQ       + +PYVFRYLA ELAAMN+ I L+L
Sbjct: 1312 NLRG-RTAGG-------KRAVPFCRVCQVP--CRLIMVPYVFRYLANELAAMNVTIRLKL 1361

Query: 1126 GD 1127
             +
Sbjct: 1362 AE 1363



 Score =  251 bits (640), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 197/614 (32%), Positives = 295/614 (48%), Gaps = 59/614 (9%)

Query: 37  HCRQAKISYTGKLMADVEFQYLDA-GSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
           HCR+A I+Y   L   V F   D      +++    G  P+M++++ C  +G    +L  
Sbjct: 147 HCREAHITYGAPL--KVSFVRSDRRDGAALKKEVVVGMAPLMVRSKLCSTRGMSPAELQR 204

Query: 96  LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
             E+  + GGYFI+NG ERV R V+  + N+P+++ R +F +R    T  AV++R  R D
Sbjct: 205 AGEDVDDGGGYFIINGNERVIRFVVQQRTNFPIALKRPAFANRDAFCTPYAVLLRSQRYD 264

Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNH--LTCCYDEKY 213
            +S +  L    +G       L  +EY     ++L+ L     L       L  C+D+  
Sbjct: 265 GTSTSNILLDTEDGRCTYRILLNRQEYFCGFFLLLRCLAGNLSLAQLKAKLLEGCWDD-- 322

Query: 214 KKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQC--LQHIGEHFQPVIDGL--QSESYYA 269
                A  +   S+ V+ +  +    + +  L+   L  +G  F   +  L     SY A
Sbjct: 323 -----AADATARSQLVEELWGQEATFADSDVLENRPLHQLGLLFWKAVHWLLRPGSSYEA 377

Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
               VIR ++  HL+  ++KF++ + M +KL  L      +++ DS   QE++LPG ++ 
Sbjct: 378 AGTYVIRHFVLPHLSSWSEKFDMALLMYKKLRLLKQGKISAESLDSFAYQEVVLPGQILA 437

Query: 330 IYLKEKLEDWLRKGKKLIQDEI---ENNGK-------KFDFFNLANIKKVMEKNPSKQIG 379
             LK+ L   L K +     EI   +N+G           FF+LA  +   E      I 
Sbjct: 438 SVLKDALFSCLAKIRLHYLQEIRMLKNSGNDPTAAIYSNKFFDLATDRCCPE------IA 491

Query: 380 TSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVR 439
             +   + TG + T T LDLQQ +G+TV A+RLN  RF+S FRAVHRG  F  ++TTSVR
Sbjct: 492 QKLSYFMATGNIRT-TQLDLQQLSGWTVTADRLNVHRFLSHFRAVHRGQFFTTMKTTSVR 550

Query: 440 KLLPESWGFLCPVHTPDGEPCGLLNHMT-STCRVASYYD--SRGNIRDFSKMRTSILRVL 496
           KLL E+WGFLCPVHTPDG PCGLL H+T S   VA   D  +R +IR F       + + 
Sbjct: 551 KLLGETWGFLCPVHTPDGAPCGLLLHLTQSAAPVALPPDRRARASIRLFLHKHGVCVDLE 610

Query: 497 IGVGMIPS--------LPKLVKSGPPAVLS---------VLLDGRVVGVIPSSEIEKVVA 539
              G+ PS          +    GP  V++         +++DG VV  +   +    + 
Sbjct: 611 GTSGLPPSDVGASARQAARPAVRGPTGVVAATSSASTFPLVVDGAVVCRLDRKDFAFWLE 670

Query: 540 HLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIE 599
             R LK   A       EV   P + GG    +++FT P + VRPVR+I     ES  IE
Sbjct: 671 TFRDLKSREAEDFKQHWEVVGFPHN-GGNLESIFIFTFPGRLVRPVRHI-----ESGRIE 724

Query: 600 LIGPFEQVFMEIRC 613
            IGP  Q +  I C
Sbjct: 725 YIGPLMQPWAAIAC 738


>gi|237843771|ref|XP_002371183.1| DNA-directed RNA polymerase I subunit RPA2, putative [Toxoplasma
            gondii ME49]
 gi|211968847|gb|EEB04043.1| DNA-directed RNA polymerase I subunit RPA2, putative [Toxoplasma
            gondii ME49]
          Length = 1388

 Score =  451 bits (1160), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 245/542 (45%), Positives = 321/542 (59%), Gaps = 57/542 (10%)

Query: 631  EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQT 690
            E+  +  LS+ A+LTPYS HNQSPRN+YQCQM KQTMG    ++ FR D K Y L TPQ 
Sbjct: 834  ELKSSAFLSIAASLTPYSHHNQSPRNIYQCQMLKQTMGTPFHSIPFRHDNKAYRLITPQR 893

Query: 691  PIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETI 750
            P+VRT  Y ++  D+YP+G NA+VAV+ YTG+DMEDAMILNK S++RG  HG +Y+++ I
Sbjct: 894  PLVRTEDYRRFDFDDYPSGVNAVVAVMCYTGFDMEDAMILNKGSMERGAFHGCVYKSKVI 953

Query: 751  DLSDDGNKVDR-GQKLFRRNKDAKSLH-SVIDSDGLPYVGQMIHPGEPYCSIYDKT---- 804
            D +    +     Q  F    +    H + +D DG P +G  I  G  YC +   +    
Sbjct: 954  DAAPASARAGAASQYTFGNVNEFGRKHIATLDGDGFPAIGAKIEKGNTYCRVQTSSSSSS 1013

Query: 805  -TNSWRTNSRKGSESVFVDYVAV---------DMKNSKNLPQKANIRFRHTRNPIIGDKF 854
              ++   ++ K  E+ +VD V            +  S     +A++R R  R P+IGDKF
Sbjct: 1014 FASNGIQHAYKDGETAYVDGVTFISPPDAAHERLAKSGLKGCRASLRLRCVRKPVIGDKF 1073

Query: 855  SSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHG 914
            +SRHGQKG+ S LWP  DMPF+  +G+ PD++ NPH FPSRMTI ML+ES+A K  ++HG
Sbjct: 1074 ASRHGQKGILSMLWPHEDMPFTE-SGLVPDILFNPHGFPSRMTIGMLIESMAGKAAAVHG 1132

Query: 915  KFMDATPF----------ANSVKKTNGDTG-----------------TDESKSLVDELGE 947
             + DATPF           N      G  G                  DE ++ VD  G+
Sbjct: 1133 AYQDATPFREFPPQSADGKNKWVDQGGYHGWVKRGERYRTPEEERQAQDEPETPVDYFGK 1192

Query: 948  MLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQ 1007
             L   G+ Y+G E LYSGVYG  LT  IF G +YYQRLRHMV+DK QVR+TG +D +T Q
Sbjct: 1193 ALMRAGYQYYGTEELYSGVYGVPLTAHIFTGLIYYQRLRHMVTDKHQVRATGPVDALTHQ 1252

Query: 1008 PIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHP 1067
            P+KGRKR GG+RFGEMERD+L++HGAA LL DRL  CSD H    C  CGS+LT + + P
Sbjct: 1253 PVKGRKRHGGVRFGEMERDALISHGAAALLQDRLLHCSDAHKTFCCPSCGSILTPSAV-P 1311

Query: 1068 QKRAIREIGGLPPARAPKKVT--CHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
              R  R  GG       K+    C  CQ       + +PYVFRYLA ELAAMN+ I L+L
Sbjct: 1312 NLRG-RTAGG-------KRAVPFCRVCQVP--CRLIMVPYVFRYLANELAAMNVTIRLKL 1361

Query: 1126 GD 1127
             +
Sbjct: 1362 AE 1363



 Score =  251 bits (640), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 197/614 (32%), Positives = 295/614 (48%), Gaps = 59/614 (9%)

Query: 37  HCRQAKISYTGKLMADVEFQYLDA-GSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
           HCR+A I+Y   L   V F   D      +++    G  P+M++++ C  +G    +L  
Sbjct: 147 HCREAHITYGAPL--KVSFVRSDRRDGAALKKEVVVGMAPLMVRSKLCSTRGMSPAELQR 204

Query: 96  LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
             E+  + GGYFI+NG ERV R V+  + N+P+++ R +F +R    T  AV++R  R D
Sbjct: 205 AGEDVDDGGGYFIINGNERVIRFVVQQRTNFPIALKRPAFANRDAFCTPYAVLLRSQRYD 264

Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNH--LTCCYDEKY 213
            +S +  L    +G       L  +EY     ++L+ L     L       L  C+D+  
Sbjct: 265 GTSTSNILLDTEDGRCTYRILLNRQEYFCGFFLLLRCLAGNLSLAQLKAKLLEGCWDD-- 322

Query: 214 KKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQC--LQHIGEHFQPVIDGL--QSESYYA 269
                A  +   S+ V+ +  +    + +  L+   L  +G  F   +  L     SY A
Sbjct: 323 -----AADATARSQLVEELWGQEATFADSDVLENRPLHQLGLLFWKAVHWLLRPGSSYEA 377

Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
               VIR ++  HL+  ++KF++ + M +KL  L      +++ DS   QE++LPG ++ 
Sbjct: 378 AGTYVIRHFVLPHLSSWSEKFDMALLMYKKLRLLKQGKISAESLDSFAYQEVVLPGQILA 437

Query: 330 IYLKEKLEDWLRKGKKLIQDEI---ENNGK-------KFDFFNLANIKKVMEKNPSKQIG 379
             LK+ L   L K +     EI   +N+G           FF+LA  +   E      I 
Sbjct: 438 SVLKDALFSCLAKIRLHYLQEIRMLKNSGNDPTAAIYSNKFFDLATDRCCPE------IA 491

Query: 380 TSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVR 439
             +   + TG + T T LDLQQ +G+TV A+RLN  RF+S FRAVHRG  F  ++TTSVR
Sbjct: 492 QKLSYFMATGNIRT-TQLDLQQLSGWTVTADRLNVHRFLSHFRAVHRGQFFTTMKTTSVR 550

Query: 440 KLLPESWGFLCPVHTPDGEPCGLLNHMT-STCRVASYYD--SRGNIRDFSKMRTSILRVL 496
           KLL E+WGFLCPVHTPDG PCGLL H+T S   VA   D  +R +IR F       + + 
Sbjct: 551 KLLGETWGFLCPVHTPDGAPCGLLLHLTQSAAPVALPPDRRARASIRLFLHKHGVCVDLE 610

Query: 497 IGVGMIPS--------LPKLVKSGPPAVLS---------VLLDGRVVGVIPSSEIEKVVA 539
              G+ PS          +    GP  V++         +++DG VV  +   +    + 
Sbjct: 611 GTSGLPPSDVGASARQAARPAVRGPTGVVAATSSASTFPLVVDGAVVCRLDRKDFAFWLE 670

Query: 540 HLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIE 599
             R LK   A       EV   P + GG    +++FT P + VRPVR+I     ES  IE
Sbjct: 671 TFRDLKSREAEDFKQHWEVVGFPHN-GGNLESIFIFTFPGRLVRPVRHI-----ESGRIE 724

Query: 600 LIGPFEQVFMEIRC 613
            IGP  Q +  I C
Sbjct: 725 YIGPLMQPWAAIAC 738


>gi|407843710|gb|EKG01580.1| DNA-directed RNA polymerase III subunit, putative [Trypanosoma cruzi]
          Length = 1683

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 365/1191 (30%), Positives = 554/1191 (46%), Gaps = 177/1191 (14%)

Query: 71   FGQFPVMLKTRRCHLQGADSQK-LVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMS 129
            F +FP M++  RC L+G D++       EE  E+GGYFI+ G ER+ RS+++ + N P++
Sbjct: 539  FSEFPEMVRGARCSLRGVDTRNDHFRAFEEQKEVGGYFIMRGGERILRSLLMQRCNVPLN 598

Query: 130  MVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIV 189
            + R  F  +   ++ KAVVIRC R    ++    YY   G V   F  +   + +PV ++
Sbjct: 599  IFRERFSSQGPFFSPKAVVIRCKRPSGLTIQNYFYYATTGEVVFSF-ARKVVWHIPVLLL 657

Query: 190  LKAL--VDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRL-Q 246
            L +L     + LE++  LT  +          V + L     K   + V  L     L Q
Sbjct: 658  LFSLNTRHCSSLEMYKLLTIGFTNCSSSHVARVEALLQHHHQKPYGSLVHFLDYMGVLGQ 717

Query: 247  CLQHIGE-----HFQPVIDGL---QSESYYAVAETVIRDYIFVHLNDN------------ 286
              +   E     HF P        Q +++Y +   ++R ++  HLN N            
Sbjct: 718  MYRKYHETSNTFHFLPQFHSTCQGQHDAWYGL--FMLRRHVLPHLNVNEPTRDLSPTATQ 775

Query: 287  ---------------NDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIY 331
                           N K + +I ++++L++  D  +     D    QEI     ++   
Sbjct: 776  EECANWLSPKLLQELNAKLDAMIAIVRQLYAFFDGANEHQGNDVPAYQEIFTVSQVLMGG 835

Query: 332  LKEKLEDWLRK---------GKKLIQD-----EIENNGKKFDFFNLANIKKVMEKNPSKQ 377
             +  L  +++             L Q      E+  N        L       E+    +
Sbjct: 836  FEVCLNKYMKSFVYRLGSHIPSHLFQSILQLGELPGNESSGVIDQLRQYTDYCERRSINE 895

Query: 378  IGTSIETMLKTGRLATQTGLDLQ--QRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
               ++  +L TG L      D    Q +G+ V AE LNF RF    R +HRG + A +R+
Sbjct: 896  PLDALHRLLITGNLTLDREEDFYCPQTSGWVVMAEHLNFYRFFEQLRCLHRGKTIAEMRS 955

Query: 436  TSVRKLLPESWGFLCPVHTPDGEPCGLLNHMT-STCRVASYYDSRGNIRDFSKMRTSILR 494
            + VRK   E++GF+C VH+PDG  CG+LNHM+ ST    S      N  D     T    
Sbjct: 956  SEVRKYPCEAFGFICMVHSPDGADCGVLNHMSVSTFVSESVPAGSRNEEDLLARITEEFH 1015

Query: 495  VLIGVGMIPSL-PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHL------------ 541
             L   G + SL  +LV + P     V ++G+++G +   E E+V   L            
Sbjct: 1016 GLRNGGSLDSLVDRLVGTVP-----VWVEGKMLGYLAPEEAERVCKALLRKKALKTGSSM 1070

Query: 542  ------RRLKVSAASVIPDDLEVGYVPLSLGGAYP-GLYLFTSPPKFVRPVRNISLPSEE 594
                  RR  V+A S++    EV YVP   G   P GLY+F    + +RPV+ I   S  
Sbjct: 1071 ELSGIVRRHSVNAFSMV----EVVYVPP--GNKDPQGLYIFYDNGRMMRPVQQIESTSHG 1124

Query: 595  SQ---NIELIGPFEQVFMEIRC--PDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSD 649
             +    +  IG +EQ +++I     D  DG  +        E + + +LS+ +   P+ +
Sbjct: 1125 DELPFPLVYIGTWEQTWLDIASVPSDLLDGLTQLNRKYEFMEQNGSNILSLTSATIPFFE 1184

Query: 650  HNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTG 709
            HN SPRN++QC ++KQ+ G  +Q L +R + KL+ +  PQ  I RT     YG+D+   G
Sbjct: 1185 HNCSPRNLFQCGLSKQSAGTQLQTLAWRKEAKLFRMYCPQRYISRTLPMDYYGLDDVNLG 1244

Query: 710  TNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRG--QKLFR 767
             NA++A+LAYTGYD++DA+ILN ++   GM    I   + I  S  G K D    Q L  
Sbjct: 1245 VNAVIAILAYTGYDLDDAVILNSTASQFGMLTAGITVAKVITASGKGEKDDVFVFQNLL- 1303

Query: 768  RNKDAKSLHSVIDSDGLPYVGQMIHPGEP--------------------YC--------- 798
               + +     +D+ GLP    +  PG                      YC         
Sbjct: 1304 --SNGQPFTPELDAHGLPRKRAV--PGTTELLSFDSDHKYPTLRDSSAVYCCAKRYERID 1359

Query: 799  -----SIYDKT----TNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPI 849
                  +Y+ T    T  W+ +  KG E+ +V  V V +      P  A + FR  R P 
Sbjct: 1360 PLMNKKVYEYTRHHVTKWWQFD--KG-ENAWVHSV-VPLTYDGPDPTSALVVFRIPRPPA 1415

Query: 850  IGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKG 909
            IGDKFSSRHGQKG         D+PFS   G+ PD+IINPHAFPSRMT+ M+LE + AK 
Sbjct: 1416 IGDKFSSRHGQKGTLPLHIRAYDLPFSTRDGITPDIIINPHAFPSRMTVGMVLEMMGAKL 1475

Query: 910  GSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGT 969
            GS+ G+F D + +          +  DE     + +G+ L+  G+N +G E L  G+ G 
Sbjct: 1476 GSIQGRFCDHSAW----------SVVDERPRSAEVIGDALQKAGYNRYGREKLIDGISGE 1525

Query: 970  ELTCEIFIGPVYYQRLRHMVSDKFQVRS---TGTMDQITR--QPIKGRKRGGGIRFGEME 1024
            E+  ++F+G   YQRLRHMV+DK+Q R+     T   +T+  QP+KGRKR GG+R GEME
Sbjct: 1526 EMEADVFMGISGYQRLRHMVNDKWQARARTDAHTHRAVTKTGQPVKGRKRHGGVRVGEME 1585

Query: 1025 RDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP 1084
            RD LL+HG+A ++ DRL   SD   A +C  CGS+L+    H  + +  +          
Sbjct: 1586 RDGLLSHGSAEVVLDRLLHVSDKAKAFICVECGSLLSIYERHATEYSTWK---------- 1635

Query: 1085 KKVTCHAC-----QTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGDGAT 1130
               TC  C     + +  +  V +P V R  AAEL  + I++ L+  D A+
Sbjct: 1636 ---TCKFCGAGSQEATDTIAFVEIPQVLRLWAAELTGIGIRVVLKTRDEAS 1683


>gi|312370727|gb|EFR19060.1| hypothetical protein AND_23137 [Anopheles darlingi]
          Length = 501

 Score =  447 bits (1150), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 240/546 (43%), Positives = 321/546 (58%), Gaps = 52/546 (9%)

Query: 582  VRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFP--ATHEEIHPTGMLS 639
            +RPV+N+      +   ELIG FEQV+++I             +P   TH E+  T  LS
Sbjct: 1    MRPVKNLL-----ANRTELIGTFEQVYLDICITP------EETYPELTTHMELSKTAFLS 49

Query: 640  VVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYT 699
             +A L P  D NQSPRNMYQCQM KQTMG        +   K Y LQTP TP+ R   Y 
Sbjct: 50   NLAQLIPMPDCNQSPRNMYQCQMGKQTMGTPCHNWAMQCTSKFYRLQTPATPLFRPVHYD 109

Query: 700  KYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV 759
               +D Y  GTNAIVAV++YTGYDMEDAMI+NKS+ +RG   G +Y+ E   L       
Sbjct: 110  NIDLDNYAMGTNAIVAVISYTGYDMEDAMIINKSAYERGFAAGTVYKNEFFAL------- 162

Query: 760  DRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESV 819
              G   F RN   ++L + +D+DGLP  G ++   +P  S +D   + +           
Sbjct: 163  -LGNSFFARNPKDETLTAFLDNDGLPCQGSVLSTNDPLYSYFDTNDHLY----------- 210

Query: 820  FVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVT 879
               +V V  K      ++  I +R  RNP +GDKF+SR GQKG+CSQ WP ID+PF+  +
Sbjct: 211  ---HVQVQDKQLSENGKQLIITYRVPRNPSVGDKFASRAGQKGICSQKWPAIDLPFTE-S 266

Query: 880  GMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESK 939
            GM PD+I NPH FPSRMTIAM++E++A K G+ HG   DATPF             DE+ 
Sbjct: 267  GMIPDIIFNPHGFPSRMTIAMMIETMAGKTGACHGLVHDATPFR-----------FDENN 315

Query: 940  SLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTG 999
            + +D  G +L T G+NY+G E +YSGV G E+  +IF G V+YQRLRHMVSDK+QVRSTG
Sbjct: 316  TAIDYFGRLLETSGYNYYGTERMYSGVDGREMKADIFFGIVHYQRLRHMVSDKWQVRSTG 375

Query: 1000 TMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSV 1059
             +DQ+T QP KGR RGGG+RFGEMERD L++HGA++LL DRL   SD  +  +C  CGS+
Sbjct: 376  PIDQLTHQPNKGRARGGGVRFGEMERDGLISHGASFLLQDRLFHGSDKVMTLICQRCGSL 435

Query: 1060 LTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
            L      P     R +            +C  CQ    +  V +PY+F++L ++L+++NI
Sbjct: 436  LG-----PLDSVTRRVAINSNEFQQTPASCRLCQDDCEIGHVEIPYIFKFLVSQLSSVNI 490

Query: 1120 KITLQL 1125
             + LQL
Sbjct: 491  NVKLQL 496


>gi|169600505|ref|XP_001793675.1| hypothetical protein SNOG_03089 [Phaeosphaeria nodorum SN15]
 gi|160705450|gb|EAT89820.2| hypothetical protein SNOG_03089 [Phaeosphaeria nodorum SN15]
          Length = 1616

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 251/644 (38%), Positives = 379/644 (58%), Gaps = 70/644 (10%)

Query: 38  CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
           CR+   +Y GKL A +E++  +       E  + G  P+ML+             LV  K
Sbjct: 123 CRERHATYRGKLRARLEWKVNNGD--WREEVCDLGAVPIMLR-------------LVKAK 167

Query: 98  EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
           EE+ E+GGYFI+NG+E++ R + + ++N+PM++ R +F +R  GYT   +++R +R DQ+
Sbjct: 168 EESEELGGYFIVNGIEKIIRMLQVNRRNFPMAIKRGAFTNRGPGYTQYGILLRSMRPDQT 227

Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
           S T  L+YL +G+V L F  +  EYL+PV +VLK+LV+TND EIF  L      +   EK
Sbjct: 228 SQTNALHYLSDGNVNLRFSWRKAEYLVPVMMVLKSLVETNDREIFEGLVGAAGSEGLAEK 287

Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
                  V++RV+++L   +   L ++ +   ++G+ F+ V+   +  S        +R 
Sbjct: 288 -----QFVTDRVELLLRTYKVYGLHSKAKTRAYLGQKFKVVLQIPEDTSDEEAGTEFLRR 342

Query: 278 YIFVHLN-------DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITI 330
            +  HL         + DKF +L+FM++KL+SLV+     DNPD++QNQEILL G L  +
Sbjct: 343 IVLPHLGAYHITPAQDADKFRMLLFMIRKLYSLVEGECCVDNPDAVQNQEILLGGQLYGM 402

Query: 331 YLKEKLEDWLRKGKKLIQDEIENNGKKFDF-------FNLANIKKVMEKNPSKQIGTSIE 383
            +KE+L+DWL+  + ++QD     G++ ++       F    I K++ ++ +  IG ++E
Sbjct: 403 IMKERLDDWLQSMRPVLQDW----GRRTEWRPFTSQEFQKDFISKILRRSQT-DIGRAME 457

Query: 384 TMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLP 443
             L TG L + TGLDLQQ AG+ V AE++NF RFIS FR VHRGA FA L+TT+VRKLLP
Sbjct: 458 YFLSTGNLISPTGLDLQQTAGFVVVAEKINFYRFISHFRMVHRGAFFAELKTTTVRKLLP 517

Query: 444 ESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP 503
           ESWGF+CPVHTPDG PCGLLNH +  C++A+      N+ D S    +I +++  +G+  
Sbjct: 518 ESWGFMCPVHTPDGAPCGLLNHFSHKCKLATQ-----NV-DVS----AIPKLVAQLGVSS 567

Query: 504 SLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL 563
                ++    A + V LDGRV+G     + + +   LR  KV  +  +P ++E+GYVP 
Sbjct: 568 KSSASIE----ASVVVQLDGRVLGFCSPKQAKVIADTLRYWKVEGSHNVPLEMEIGYVPN 623

Query: 564 SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDG----GDG 619
           S GG YPG+Y+ +   +  RPV+ + L       ++ +GPFEQ +M I C D     GD 
Sbjct: 624 SNGGQYPGVYMMSQVARMYRPVKYLPL-----DKLDYVGPFEQPYMSIACTDAEIVSGD- 677

Query: 620 GRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMA 663
                  +TH E  PT + S+VAN+TP+SD NQSPRNMYQC  A
Sbjct: 678 -------STHVEYDPTNIFSIVANMTPFSDFNQSPRNMYQCLSA 714



 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 233/517 (45%), Positives = 305/517 (58%), Gaps = 58/517 (11%)

Query: 649  DHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPT 708
            D  Q P     CQM KQ+MG    A+++R D K Y LQT QTP+VR   + +YG D +P 
Sbjct: 1116 DAAQKPFFTGNCQMGKQSMGTPGTAMRYRTDNKTYRLQTGQTPVVRPPLHNEYGFDNFPN 1175

Query: 709  GTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQ---KL 765
            GTNA+VAV++YTGYDM+DAMILNKS+ +RG  HG IY+T+  DL +   +   G+   KL
Sbjct: 1176 GTNAVVAVISYTGYDMDDAMILNKSAHERGFGHGTIYKTKICDLEEGARRNRSGRTISKL 1235

Query: 766  FRRNKDA---KSLHSVIDSDGLPYVGQMIHPGEPYCSI----YDKTTNSW-----RTN-- 811
            F    D+    S    +D DGLP +G ++  G+   +     YD  ++ +      TN  
Sbjct: 1236 FGFAPDSLVPASRKETLDEDGLPRIGTLLRNGDAIAAWHTVSYDAASDDYVNRDANTNYF 1295

Query: 812  SRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPD 870
              K  E  FV+ V +        P QK +I+ R  R+P+IGDKFSSRHGQKGVCSQ WP 
Sbjct: 1296 KYKEDELAFVEEVRIIGSEDGTQPCQKLSIKLRVPRSPVIGDKFSSRHGQKGVCSQKWPS 1355

Query: 871  IDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTN 930
            IDMPFS  +G++PD+IINPHAFPSRMTI M +ES+A K G+LHG   D+TPF        
Sbjct: 1356 IDMPFSE-SGIQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPFR------- 1407

Query: 931  GDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVS 990
                 DE  + VD  G  L   G+NY+G E +YSG+ G EL  +I+IG VYYQRLRHMV+
Sbjct: 1408 ----FDEQNTAVDFFGHQLMKAGYNYYGNEPMYSGITGQELAADIYIGVVYYQRLRHMVN 1463

Query: 991  DKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVA 1050
            DK+QVR+TG ++  T QPIKGRK+GGGIR GEMERD+L+AHG A+LL DRL  CSDY  A
Sbjct: 1464 DKYQVRTTGPINSTTGQPIKGRKKGGGIRVGEMERDALIAHGTAFLLQDRLMNCSDYTKA 1523

Query: 1051 DVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHAC------------------ 1092
             +C  CGS L+          + E G      A   + C  C                  
Sbjct: 1524 PICRECGSFLSTA------PTVSEYGRKKDRGAQLTIRCRRCAKPADGITNKADVWMDGQ 1577

Query: 1093 ----QTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
                Q  + +  VA+P V +YL  ELA+M +K+  ++
Sbjct: 1578 GMRFQGGENIGVVAVPGVLKYLDVELASMGVKLKFKV 1614


>gi|296421898|ref|XP_002840500.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295636718|emb|CAZ84691.1| unnamed protein product [Tuber melanosporum]
          Length = 660

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 238/573 (41%), Positives = 355/573 (61%), Gaps = 34/573 (5%)

Query: 38  CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
           CR+  I+Y GKL   +  +  D   P V +    G  P+M+++ RCHL+      LV  K
Sbjct: 101 CRERHITYRGKLSVKLGLRINDG--PWVSQDREVGNIPIMVRSNRCHLENLAPHDLVERK 158

Query: 98  EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
           EE+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF  R + YT+  + IRCVR DQS
Sbjct: 159 EESEELGGYFIVNGIEKLIRLLIVQRRNHPMAIIRPSFTGRGKSYTNMGIQIRCVRPDQS 218

Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
           S T  L+YL +G+V   F  +  EYL+PV +++KALV+TND EIF+ L    D       
Sbjct: 219 SQTNVLHYLNDGNVTFRFSWRKNEYLVPVIMIMKALVETNDREIFDGLLTTKD------- 271

Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
             + +  +++RV+++L   +   L T+ + LQH+GE F+ V+      S   V    ++ 
Sbjct: 272 --MENTFLTDRVELLLRTFKGYQLLTQKENLQHLGEKFRIVMGVSPDLSDVEVGREFLKK 329

Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
              VHL D  DK+ LL+FM +KL++L + T  +DNPD++Q+QE+LL G L  + +KE+ E
Sbjct: 330 IALVHLEDPRDKYRLLLFMARKLYALAEGTCQADNPDAIQHQEVLLGGFLYGMIIKERAE 389

Query: 338 DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
           ++L    + +Q E++  G   DF N  +  ++ ++  S+ IG S+E  + TG L++ +GL
Sbjct: 390 EYLESIVREVQREVQR-GNVLDFNNKEHRTRMFQRT-SENIGKSLEYFISTGNLSSPSGL 447

Query: 398 DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDG 457
           DLQQ +G+T+ AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPVHTPDG
Sbjct: 448 DLQQVSGFTIVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDG 507

Query: 458 EPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMI-PSLPKLVKSGPPAV 516
            PCGLLNH+   C+V +      +IR          + L+ +G+  P+   L  S   A 
Sbjct: 508 SPCGLLNHLAHKCQVITAPSDVSSIR----------KTLVSLGVTSPATSPLPHS---AT 554

Query: 517 LSVLLDGRVVGVIPSSEIEKVVAH-LRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLF 575
           L V LDG +VG   S ++  VVA  LR  KV  +  +P DLE+GYVP+S  G YPG+YLF
Sbjct: 555 LCVQLDGCIVGWC-SPKLANVVADTLRFWKVEGSHGVPLDLEIGYVPISRCGQYPGIYLF 613

Query: 576 TSPPKFVRPVRNISLPSEESQNIELIGPFEQVF 608
           +   + +RPV+ + L  E     +L+GPFEQ +
Sbjct: 614 SQQARMIRPVKYLPLDKE-----DLVGPFEQPY 641


>gi|340058209|emb|CCC52563.1| putative RNA polymerase I second largest subunit [Trypanosoma vivax
            Y486]
          Length = 1590

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 354/1203 (29%), Positives = 558/1203 (46%), Gaps = 203/1203 (16%)

Query: 70   NFGQFPVMLKTRRCHLQGADSQ-KLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPM 128
            +F +FP M+   RC L+    +    S  EE  E+GGYFI+ G ER+ R++++ + N P+
Sbjct: 445  SFFEFPEMVMGSRCALRRVHHRYDHFSALEEQKEVGGYFIMRGGERIIRALLMQRCNVPI 504

Query: 129  SMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGI 188
            ++ R  F      ++ +AVVIRC R    +     YY   G V   F  +   + +   +
Sbjct: 505  NIQREQFSAHDSTFSSRAVVIRCKRPSGLTNQNYFYYSTTGDVVFSF-ARKVVWHISASL 563

Query: 189  VLKALVDTN--DLEIFNHLTCCYDEKYKKEKGAVGSPLVSE----RVKIILAE---VQDL 239
            +L AL   +   +E++  LT             +G P V++    RV+            
Sbjct: 564  LLFALNSQHRSSIEMYKLLT-------------IGLPNVTKSHAARVEAFFQHHYAASYS 610

Query: 240  SLTTRLQCLQHIGE----------------HFQPVIDGLQSESYYAVAETVIRDYIFVHL 283
            SLT  L  +  +G                  F     G Q +++Y +   ++R ++  HL
Sbjct: 611  SLTNYLDYMAVLGRIYRQYQLSSTAFRFLPQFHFTCQG-QHDAWYGL--FMLRRHVLPHL 667

Query: 284  NDNND---------------------------KFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            N +                             KF+ +I +L++L+S  D  +     D L
Sbjct: 668  NVDEPTPDLSPTATQEELTAWLSPELQRELEFKFDTIIAILRQLYSFNDGVTEHQGNDVL 727

Query: 317  QNQEILLPGHLITIYLKEKLEDWL-----RKGKKLIQDEIENNGKKFDFFN------LAN 365
              QE+     ++    +  L  +L     R G  +  +   +  K  D         L  
Sbjct: 728  SFQEVFTVSQVLVGAFEVALNKYLKSMSFRLGSHIPPEMFRSIVKLTDKPTRETSDILQQ 787

Query: 366  IKKVMEKNPSKQIGTSIETMLK---TGRLATQTGLDL--QQRAGYTVQAERLNFLRFISF 420
            I+   E    +     ++ +L+   TG        D    Q +G+ V AE LNF RF   
Sbjct: 788  IRHYSEYAARRNGIEPLDPVLRLLLTGNFNLDREEDFFCPQTSGWVVIAEHLNFYRFFEQ 847

Query: 421  FRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMT-STCRVASYYDSR 479
            FR +HRG + A +R++ VR+   E++GFLC VH+PDGE CG+LNH++ ST   AS   S 
Sbjct: 848  FRCLHRGKTIAEMRSSEVRRYPCEAYGFLCMVHSPDGEDCGVLNHLSVSTILSASQPASS 907

Query: 480  GNIRDFSKMRTSILRVLIGV----GMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIE 535
               R +++M+ ++   L  V        S+ +LV + P     V ++G+VVG +   E +
Sbjct: 908  ---RQWAEMQETLAVALRNVRSNASRAASVDQLVGTVP-----VWVEGKVVGYLTPMEAQ 959

Query: 536  KVVAHLRRLKV-SAASVIP-------------DDLEVGYVPLSLGGAYPGLYLFTSPPKF 581
            +  A LR  K+  + SV+              + +EV YVP       PGLY+F    + 
Sbjct: 960  QTAAALRLKKIIKSRSVVGVTGIVRRHDVSALNTVEVVYVPPE-NKDPPGLYIFYEHGRL 1018

Query: 582  VRPVRNISLPSEESQ---NIELIGPFEQVFMEIRCPDGGDGGRRNA---FPATHEEIHPT 635
            +RPV+ I   S  +     I  +G +EQ + +I    G      NA       +E +   
Sbjct: 1019 MRPVQQIESSSRGTDLPFPIVYLGTWEQTWQDI---AGVPSDLLNAVMQLNRKYEYMEQN 1075

Query: 636  G--MLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIV 693
            G  +LS+ ++  P+ +HN SPRN++QC ++KQ+ G  +Q++ +R + KL+ +  PQ  I 
Sbjct: 1076 GYNILSLTSSTIPFFEHNCSPRNLFQCGLSKQSAGTQLQSMAWRKEAKLFRMYFPQRYIS 1135

Query: 694  RTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLS 753
            RT     Y +D+   G NA++A+LAYTGYD++DA+I+N +S   GM +  I   + +   
Sbjct: 1136 RTLPMDYYNLDDVNLGVNAVIAILAYTGYDLDDAVIINSTSTQFGMLNAGITVAKVVTAK 1195

Query: 754  DDGNKVDRGQKLFRRN-KDAKSLHSVIDSDGLPYVGQMIHPGEP---------------- 796
              G K D    +F+      +     +D+ GLP   + + PG                  
Sbjct: 1196 GKGEKDDVF--VFQNQLPSGQPFTPELDAHGLPR--KRLEPGSSKFFSFDSDHQCPALRE 1251

Query: 797  ----YCSI-----YDKTTNS------------WRTNSRKGSESVFVDYVAVDMKNSKNLP 835
                YC        D  TN             WR +  KG ++     + +        P
Sbjct: 1252 SSAVYCCAKRFEHVDPLTNEKVYEYARHHVTRWR-HFDKGEDAWVHSVIPLAFDGPD--P 1308

Query: 836  QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSR 895
                + FR  R P++GDKFSSRHGQKG         D+PFS   G+ PD+IINPHAFPSR
Sbjct: 1309 TSVLLVFRIPRPPLVGDKFSSRHGQKGTLPLHIRSHDLPFSTHDGITPDVIINPHAFPSR 1368

Query: 896  MTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFN 955
            MT+ M+LE + AK G++ G+F D +P+             D+     + +G+ L + G+N
Sbjct: 1369 MTVGMVLEMMGAKLGAIQGRFCDHSPWC----------VVDDQPRFAEMIGDALCSAGYN 1418

Query: 956  YHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRS---TGTMDQITR--QPIK 1010
             +G E L  GV G E+  E+F+G   YQRLRHMV+DK+Q R+     T   +T+  QP+K
Sbjct: 1419 RYGREKLIDGVSGVEMEAEVFLGISGYQRLRHMVNDKWQARARTDAHTHRAVTKTGQPVK 1478

Query: 1011 GRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKR 1070
            GRKR GG+R GEMERD+LL+HGAA ++ DRL   SD   A +C  CGS+++    H  + 
Sbjct: 1479 GRKRHGGVRVGEMERDALLSHGAAEVVVDRLLHVSDKTKAFICVECGSLISIYERHATEY 1538

Query: 1071 AIREIGGLPPARAPKKVTCHAC-----QTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
            +  +             TC  C     +++  +  V +P V R  AAEL ++ I++ L  
Sbjct: 1539 STWK-------------TCKFCNAGLHESNDTIAFVEIPQVLRLWAAELTSVGIRVVLNT 1585

Query: 1126 GDG 1128
             D 
Sbjct: 1586 SDS 1588


>gi|402549534|ref|XP_001565714.2| RNA polymerase I second largest subunit, putative [Leishmania
            braziliensis MHOM/BR/75/M2904]
 gi|356482963|emb|CAM39212.2| RNA polymerase I second largest subunit, putative [Leishmania
            braziliensis MHOM/BR/75/M2904]
          Length = 1567

 Score =  428 bits (1100), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 344/1188 (28%), Positives = 560/1188 (47%), Gaps = 166/1188 (13%)

Query: 66   RERF--NFGQFPVMLKTRRCHLQGADSQKLVSLK--EEAAEMGGYFILNGLERVFRSVIL 121
            +E+F  NF  FP M+K  RC L+  D+ +L   +  EE  E+GGYFI+NG ER+ R++++
Sbjct: 415  KEQFWVNFASFPEMVKGARCALRNVDA-RLDHFRALEEQKEVGGYFIMNGGERILRALLM 473

Query: 122  PKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKE 181
             + N P+++ R  F  +   ++ KAVVIRC R    +     YY   G V   F  +   
Sbjct: 474  QRCNVPINIFRERFATQGPHFSAKAVVIRCKRPSGLTAQNYFYYTTQGEVIFSF-ARKVV 532

Query: 182  YLLPVGIVLKALV--DTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKII--LAEVQ 237
            + LPV ++L A+     + +E+   LT    E     +  V + L   R K    L    
Sbjct: 533  WHLPVPLLLSAMSTQSVSAVELQRLLTIGMPEGSHAAR--VEALLQHHRGKPYGDLRHFT 590

Query: 238  D-LSLTTRLQCLQHIGE---HFQPVI---DGLQSESYYAVAETVIRDYIFVHLN------ 284
            D +++  R+    H      HF P+       Q +++Y +   ++R +I  HLN      
Sbjct: 591  DYITVLGRMYREYHQNSSTFHFLPLYAKGSTCQHDAWYGM--FMLRRHILPHLNSCDAAT 648

Query: 285  ----------------------DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEIL 322
                                  + + KF+ +I + ++L+  +D        D    QE+ 
Sbjct: 649  PDLAPGATAQMLVAWLSPALLAELDRKFDAMIAITRQLYLFIDGAVEHQGNDVPAYQELF 708

Query: 323  LPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSI 382
                ++    +  L  ++R     +   +          +L  +  V  ++  +Q+    
Sbjct: 709  TVSQVLMGAFEVCLNRYMRGFVYRLARHLP-AALFHRILSLRTLPPVDAEDIVRQVRQFA 767

Query: 383  ETMLKTG---------RLATQTGLDLQQRAGY--------TVQAERLNFLRFISFFRAVH 425
            E   + G         RL     L+L +   +         V AE LNF RF    R VH
Sbjct: 768  EFCGRHGGSDPLDQLRRLLVTGNLNLDREEDFYCPQTSGWVVMAEHLNFYRFFEQLRCVH 827

Query: 426  RGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDF 485
            RG + A +R++ VRK   E++GF+C V +PDGE CG+LNH++    ++    +  ++   
Sbjct: 828  RGKTIADMRSSEVRKYPCEAYGFICMVQSPDGEDCGVLNHLS----ISMISSNSPDVAMT 883

Query: 486  SKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK 545
            +++R  + + +  V    +   +V      V  V ++G ++G +  ++  K  A LR+LK
Sbjct: 884  AQLREMVCKAVPNVRSRATRSSVVDQLCETV-PVWMEGELLGYLSPTDAMKAAATLRQLK 942

Query: 546  -------VSAASVIP-------DDLEVGYVPLSLGGAYP-GLYLFTSPPKFVRPVRNISL 590
                   V  + ++          LEV YV  + G   P GLY+F    + +RPV+ +  
Sbjct: 943  ALTLRSQVHVSGIVRRKDASPLHTLEVVYV--APGSRDPAGLYVFYDCGRLMRPVQLLES 1000

Query: 591  PSEESQN-----IELIGPFEQVFMEIRC--PDGGDGGRRNAFPATHEEIHPTGMLSVVAN 643
                        +  IG +EQ + ++     D  D   +      + E + T  +S+ + 
Sbjct: 1001 SVRTGATHLPFPLVFIGTWEQSWADVAAVPSDPLDAVVQLNRKYEYMEQNGTNFISLTSA 1060

Query: 644  LTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGI 703
              P+ +HN SPRN++QC ++KQ+ G  +QAL +R + KL+    PQ  I RT     YG+
Sbjct: 1061 TIPFFEHNCSPRNLFQCGLSKQSSGTQLQALAWRKEAKLFRTYCPQRYISRTLPMDYYGL 1120

Query: 704  DEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQ 763
            D+   G NA++A+LAYTGYDM+DA+I+N ++  RGM    +   + +  +  G+  D   
Sbjct: 1121 DDVNLGVNAVIAILAYTGYDMDDAVIINTTTTQRGMLTAGVTVAKIVTAAGRGSDKDDVF 1180

Query: 764  KLFRRNKDAKSLHSVIDSDGLP------------YVGQMIHPG-----EPYC-------- 798
                     +   + ++++GLP            +     +PG     + YC        
Sbjct: 1181 VFHNLLSTGERFTAQLEANGLPPKRVNASLEAFSFDRDHKYPGLRDNSDVYCCAKRVERV 1240

Query: 799  ------SIYDKT---TNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPI 849
                  SIY+ T      WR +  KG E  +V  V + +  S   P    + FR  R P 
Sbjct: 1241 DPFTNKSIYEYTRHHATKWR-HFDKG-EDAWVQQV-IPLVYSGPDPTSVLMIFRIPRPPT 1297

Query: 850  IGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKG 909
            +GDKFSSRHGQKG         D+PFS  +G+ PD+IINPHAFPSRMT+ M+LE + AK 
Sbjct: 1298 VGDKFSSRHGQKGTLPLHISSHDLPFSTTSGITPDVIINPHAFPSRMTVGMMLEIMTAKV 1357

Query: 910  GSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGT 969
            G++ G+F+D + ++            D+   + + +G+ L   G+N +G E L  G+ G 
Sbjct: 1358 GAIEGRFIDNSAWST----------VDDQPRVAELIGDALVKAGYNRYGREHLIDGISGE 1407

Query: 970  ELTCEIFIGPVYYQRLRHMVSDKFQVRS---TGTMDQITR--QPIKGRKRGGGIRFGEME 1024
            E+  ++F+G   YQRLRHMVSDK+Q R+     T   +T+  QP+KGRKR GG+R GEME
Sbjct: 1408 EMKADVFMGICGYQRLRHMVSDKWQARARTDAHTYRAVTKTGQPVKGRKRHGGVRVGEME 1467

Query: 1025 RDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP 1084
            RD LL+HG + ++ DRL   SD   A +C  CGS+L+       +R   E G        
Sbjct: 1468 RDGLLSHGISEVVVDRLLHVSDKTKAFICPRCGSLLSL-----YERHATEYGTWR----- 1517

Query: 1085 KKVTCHAC-----QTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
               TC  C     +++  +  V +P V R  AAEL ++ I++ L+  +
Sbjct: 1518 ---TCRFCGAGADESTDSIAMVEIPQVLRLWAAELTSIGIRVVLKTSE 1562


>gi|443693201|gb|ELT94631.1| hypothetical protein CAPTEDRAFT_178602 [Capitella teleta]
          Length = 1134

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 338/1137 (29%), Positives = 528/1137 (46%), Gaps = 157/1137 (13%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR   ++Y+  +  D+E  Y      +VR     G+ P+ML++  C L G    +L  L+
Sbjct: 98   CRLRDMTYSAPITVDIE--YTRGSQRIVRNNLPIGRMPIMLRSSNCVLVGKVPAELAKLQ 155

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            E   + GGYFI+ G+E+V   +++ +Q     M+  +  D++             RK ++
Sbjct: 156  ECPIDPGGYFIVRGVEKV---ILIQEQLSKNRMIVDT--DKKGNAMCSVTSSTHERKSKT 210

Query: 158  SVTLK--LYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
            +V +K   YY+ + ++            LP+ I LKA+   +D EI              
Sbjct: 211  NVIMKHHKYYIQHNTLSED---------LPIAIALKAMGIESDQEIVQ------------ 249

Query: 216  EKGAVGS-PLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQP--VIDGLQSESYYAVAE 272
                VGS  +V   +   L E     + T++Q L+++G   +   +  G   +S    A 
Sbjct: 250  ---MVGSEEMVLAAMAPCLEECHRAQVYTQVQALKYMGGKVRQRRIWGGGAKKSKAEEAR 306

Query: 273  TVIRDYIFVHLNDNNDKFNL----LIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
             +++  I  H+   N  F +       ML++      +T   D+ D + N+ + L G L+
Sbjct: 307  ELLQGTIIAHVPVTNWNFKVKASYTALMLRRCILAQGNTMNVDDRDYVGNKRLELAGQLL 366

Query: 329  TIYLKEKLEDWLRKGKKLIQDEI-ENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLK 387
            ++  ++  + +  + K++    I +    +FD      I K M ++   QI   +   + 
Sbjct: 367  SLLFEDLFKKFNSELKRIADMTIPKPRAAQFD------IVKHMRQD---QITNGLTHAIS 417

Query: 388  TGRLATQT-GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPES 445
            +G  + +   +D   R G T    RL+F+  +     +   + F   R  S  R L P  
Sbjct: 418  SGNWSIKRFKMD---RQGVTQVLSRLSFISALGHMTRI--TSQFEKTRKVSGPRSLQPSQ 472

Query: 446  WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
            WG LCP  TP+GE CGL+ ++     V +       IR    +    +  L G  +    
Sbjct: 473  WGMLCPSDTPEGEACGLVKNLALMTHVTTDLPEESIIRLAHNLGVEDIHFLSGDELT--- 529

Query: 506  PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
                    P +  VLL+G ++GVI   E  ++V   RR++   A  + +     +V +S 
Sbjct: 530  -------SPLIYLVLLNGNILGVI--REYRRLVRTFRRMR--RAGYVSE-----FVSISP 573

Query: 566  GGAYPGLYLFTSPPKFVRP---VRNISLPSEESQNIELIGP----FEQVFMEIRCPDGGD 618
              A+  +++ +   +  RP   V N   P  + ++I+ +      FE    E        
Sbjct: 574  NHAHRVVHIASDGGRVCRPYIIVEN-GEPRVKDRHIQELTQGVRCFEDFLQEGLVEYLDV 632

Query: 619  GGRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMG 668
                + F A          TH EI P  +L V A L PY  HNQSPRN YQC M KQ MG
Sbjct: 633  NEENDCFIALYESEIHKETTHLEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMG 692

Query: 669  FSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAM 728
                  + R D  +Y L  PQ P+V+T T    G D+ P G NA VAV++Y+GYD+EDA+
Sbjct: 693  TIGYNQRNRIDSLMYLLCYPQAPMVKTKTIDLIGFDKIPAGQNATVAVMSYSGYDIEDAL 752

Query: 729  ILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR--GQKLFRRNKDAKSLHSVIDSDGLP 785
            ILNK+S+DRG     +Y+   + L    N+  D+  G  +    K     H ++D DG+ 
Sbjct: 753  ILNKASLDRGFGRCLVYRNAKVALKRYANQTFDKVMGPMIDAETKKQIWRHDILDMDGIC 812

Query: 786  YVGQMIHPGEPYCSIY--DKTTNSWRTN--------------SRKGSESVFVDYVAVDMK 829
              G+ +   +   + Y    T N  +++                KG    +++ V +   
Sbjct: 813  SPGEKVENKQLLVNKYMPTVTINPLQSSGGQPQQPEYRDVPLGYKGPMPSYIEKVMISSN 872

Query: 830  NSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINP 889
              +    K  I  R TR P IGDKFSSRHGQKGVC  + P  DMPFS + G+ PD+I+NP
Sbjct: 873  EEEAFIIK--ILLRQTRRPEIGDKFSSRHGQKGVCGLIVPQADMPFSNL-GICPDIIMNP 929

Query: 890  HAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEML 949
            H +PSRMT+  L+E + +K G L GKF   T F        GD         V +L E+L
Sbjct: 930  HGYPSRMTVGKLIELMGSKAGVLEGKFHYGTAFG-------GDK--------VSDLSEVL 974

Query: 950  RTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPI 1009
               GFNY G + + SG+ G  L+  IF GP++YQ+L+HMV DK   R+ G    +TRQP 
Sbjct: 975  VKHGFNYLGKDFVTSGITGEPLSAYIFFGPIFYQKLKHMVIDKMHARAKGPRAVLTRQPT 1034

Query: 1010 KGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQK 1069
            +GR R GG+R GEMERD L+ +GA+ LL +RL   SD    DVC+ CG +  + +     
Sbjct: 1035 EGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCNQCGLLGYSGW----- 1089

Query: 1070 RAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI--KITLQ 1124
                               CH C++S  + ++ MPY  + L  EL +MNI  ++TLQ
Sbjct: 1090 -------------------CHYCKSSSHVSSLKMPYACKLLFQELQSMNIVPRLTLQ 1127


>gi|452820803|gb|EME27841.1| DNA-directed RNA polymerase subunit [Galdieria sulphuraria]
          Length = 1158

 Score =  424 bits (1090), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 349/1205 (28%), Positives = 534/1205 (44%), Gaps = 192/1205 (15%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMF--------------------------------- 35
            F  LR LV+ HIESF++++++ LS++                                  
Sbjct: 52   FLKLRGLVKQHIESFNFLIEKELSKIVAANDKVTCDADQSFYLRYLGIRVGTPSIEEDLV 111

Query: 36   ------DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
                    CR   ++Y   +  DV  +Y      ++R+    G+ P+ML++  C L G  
Sbjct: 112  ISKVTPQECRLRDLTYAAPIYVDV--RYTRGKEVLIRKDVAIGRIPIMLRSSHCILTGKK 169

Query: 90   SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
              +L SL E   + GGYFI+ G ERV   +++ +Q     ++     D++  Y       
Sbjct: 170  DGQLASLGECPLDPGGYFIIRGTERV---ILIQEQLSKNRIIIEE--DKKGNYCATVTSS 224

Query: 150  RCVRKDQSSVTLKL--YYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTC 207
               RK ++S+  K    YL + S+            +P+ IV KAL   +D EI   L  
Sbjct: 225  THERKSRTSLVYKSNNIYLRHNSLVDD---------IPIWIVFKALEVESDQEIV-QLIG 274

Query: 208  CYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQ---- 263
              +E+Y+         L++ + + I   VQ+     R + L++IG   +    G      
Sbjct: 275  LIEEEYRSYYF-----LLNHKKECISRHVQN-----RNEALEYIGSRVRLFRKGYSFRRS 324

Query: 264  -SESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEIL 322
              E    V   VI  +I  + ++  +K   L FM+++L ++ ++ +  D+ D   N+ + 
Sbjct: 325  TIEEAQEVLAGVILSHIPTYQHNFRNKSIYLAFMVRRLLTVAENLTTVDDKDYYGNKRLE 384

Query: 323  LPGHLITIYLKEKLEDW---LRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIG 379
            L G L+++  ++  + +   L++   ++  +  N   +FD      I K M  +    I 
Sbjct: 385  LAGQLLSLLFEDLFKKFNADLKRHADMVLSK-PNRAAQFD------IVKCMRPD---TIS 434

Query: 380  TSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-V 438
              +E  + TG    +       RAG T    RL+++  +     +   + F   R  S  
Sbjct: 435  VGLENAIGTGNWTVKRFR--MHRAGITQVLSRLSYIAALGMMTRI--TSQFEKTRKISGP 490

Query: 439  RKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIG 498
            R L    WG LCP  TP+GE CGL+ ++  T  + +  +    IR         L  ++G
Sbjct: 491  RSLQGSQWGLLCPSDTPEGESCGLVKNLALTAHITTDAEEEPLIR---------LCYILG 541

Query: 499  VGMIPSLPKLVKSGPPAVLSVLLDGRVVGV-IPSSEIEKVVAHLRRLKVSAASVIPDDLE 557
            V    +L    +   P+   + L+G+ +G+   +S    +   LRR              
Sbjct: 542  VED-ATLFSGDELNNPSHFRIFLNGKFLGIHRNASYFANIFRFLRRKGAIGE-------- 592

Query: 558  VGYVPLSLGGAYPGLYLFTSPPKFVRP----------VRNISLPSEESQNIELIGPFEQV 607
              +V + +  A   +YL     +  RP          V    +   E   +E     +Q 
Sbjct: 593  --FVSIFVNEAENVVYLSCDSGRICRPLIIVENGKPKVTQQYIEQLERNQLEFTDLVQQG 650

Query: 608  FMEIRCPDGGDGG-----RRNAFPA--THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQC 660
             +E    +  +         N  P   TH EI P  +L V A + PY  HNQSPRN YQC
Sbjct: 651  LVEYLDVNEENNALIALSEENIEPCSTTHLEISPLAILGVCAGVIPYPHHNQSPRNTYQC 710

Query: 661  QMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYT 720
             M KQ +GF       R D  LY L   Q P+V T T +    DE P G NAIVAV++Y+
Sbjct: 711  AMGKQAIGFIGYNQHLRTDTLLYLLTYAQKPLVNTKTISFIKYDELPGGQNAIVAVMSYS 770

Query: 721  GYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGN----KVDRGQKLFRRNKDAKSLH 776
            GYD+EDA+ILN+SS+DRG     + +     L    N    +V R       ++      
Sbjct: 771  GYDIEDALILNRSSLDRGYGRCCVVRKHAFGLRRYPNGTCDRVCRPPSFSESSERTHMKF 830

Query: 777  SVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR---------------KGSESVFV 821
            + ++ DGLP VG  + PG+ Y              S+               KG +   +
Sbjct: 831  ACLEEDGLPKVGGRLSPGQAYVYKETPMDTMTTMTSQQSIQQVGYRPQPFFYKGPDDAVI 890

Query: 822  DYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGM 881
            D V V    S +   K  I  R TR P +GDKFSSRHGQKGVC  + P  DMPF+   G+
Sbjct: 891  DRVVVTSNASTHALIKVMI--RETRTPEVGDKFSSRHGQKGVCGLIVPQEDMPFNE-QGI 947

Query: 882  RPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSL 941
             PD+I+NPH FPSRMT+  LLE +A K G L G+F + T F       +GD   D +  L
Sbjct: 948  CPDIIMNPHGFPSRMTVGKLLELMAGKAGVLSGEFKNGTAF-------DGDPLEDCASLL 1000

Query: 942  VDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTM 1001
            V          GF+Y G + LYSG+ G  L   +F+GP+YYQ+L+HMV DK   R+ G  
Sbjct: 1001 VQH--------GFSYTGKDFLYSGMTGEPLQAYVFMGPIYYQKLKHMVKDKMHARARGPR 1052

Query: 1002 DQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLT 1061
              +TRQP +GR R GG+R GEMERD L+ +GA+ L+ +RL   SD   A VC  CG +++
Sbjct: 1053 AVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLIMERLMHSSDAFTAHVCRQCGLIVS 1112

Query: 1062 ATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI-- 1119
              +                        C  C  S  +  + +PY  + L  EL +MNI  
Sbjct: 1113 KDW------------------------CPTCGNSLQIRPLKIPYACKLLFQELQSMNIWP 1148

Query: 1120 KITLQ 1124
            KI L+
Sbjct: 1149 KILLE 1153


>gi|358366889|dbj|GAA83509.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Aspergillus
            kawachii IFO 4308]
          Length = 1233

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 346/1146 (30%), Positives = 518/1146 (45%), Gaps = 166/1146 (14%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
             CR    +Y   +  D  F+Y+     V+R+    G+ PVML++ +C L      ++  L
Sbjct: 191  ECRLRDTTYAAPIQVD--FEYVRGRQRVMRKGVAIGRMPVMLRSSKCVLANKTPAEMTVL 248

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
             E   + GGYFI+NG E+V    IL ++    + +      ++E            RK +
Sbjct: 249  NECPLDPGGYFIVNGTEKV----ILVQEQLSKNRIIVETDPKKEIVQASVTSSSNERKSK 304

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
            S + LK   L    V+     +     +P+ I+LKA+    D E+   L    D+ Y+  
Sbjct: 305  SYIVLKKDKLY---VKHNVLSED----IPIVILLKAMGIHTDKEML-LLVAGVDKVYQ-- 354

Query: 217  KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA--VAETV 274
                      E   I   E   L + T+ Q L  IG   +  I+  QS SY    V E V
Sbjct: 355  ----------EDFAINFEEAIKLGIYTQQQALDWIGARIK--INRKQSPSYRRTHVQEAV 402

Query: 275  --IRDYIFVHLNDNNDKFN----LLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
              I   I  H+   N  F      +  M +++    +  S+ D+ D L N+ + L G L+
Sbjct: 403  EAIASVIISHIEVKNMNFRPKAVYVAHMARRVLMAKNDASLVDDRDYLGNKRLELAGQLL 462

Query: 329  TIYLKEKLEDWLRK---GKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIET- 384
             +      ED  +K     K+  D++ N   + + F+  ++  +   + ++ +  +I T 
Sbjct: 463  ALLF----EDLFKKFCFDIKMNIDKVLNKRNRAEAFDAYSVITMHSNHITQGMNRAISTG 518

Query: 385  --MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKL 441
               LK  R+         +RAG T    RL+++  +     +   + F   R  S  R L
Sbjct: 519  NWSLKRFRM---------ERAGVTHVLSRLSYIAALGMMTRI--SSQFEKTRKVSGPRAL 567

Query: 442  LPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDF------SKMRTSILRV 495
             P  +G LCP  TP+GE CGL+ ++     + +  D  G IR+         ++T   + 
Sbjct: 568  QPSQFGMLCPADTPEGEACGLVKNLALMTHITTN-DEEGPIRNLIFMLGAEDIQTVGGKE 626

Query: 496  LIGVGM----IPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV 551
            L G G     I   P  +   P   L      R +G I S  +   + H +R    A  V
Sbjct: 627  LYGPGCYTISINGTPTALTRRPKYFLDAFRRLRRMGRI-SEFVSIYINHHQR----AVHV 681

Query: 552  IPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEE-------------SQNI 598
              DD   G +   L     G     +  + +  +RN ++  ++              +N 
Sbjct: 682  ATDD---GRICRPLIVVENGKSRVNA--QHLEKLRNGTMQFDDFLAQGLVEYLDVNEEND 736

Query: 599  ELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMY 658
             LI  +E+   E                 TH EI P  +L  VA L PY  HNQSPRN Y
Sbjct: 737  SLISIYEKDITET---------------TTHLEIEPFTVLGAVAGLIPYPHHNQSPRNTY 781

Query: 659  QCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLA 718
            QC M KQ +G        R D  LY +  PQ P+V++ T      D+ P G NAIVAV++
Sbjct: 782  QCAMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSRTIELTKYDQLPAGQNAIVAVMS 841

Query: 719  YTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DRGQKLFRRNKDAKSLHS 777
            Y+GYD+EDA++LNK SVDRG    Q+++    +L    N   DR       N      H+
Sbjct: 842  YSGYDIEDALVLNKGSVDRGFGRCQVFRKYVTNLKSYSNGTKDRLSGPTYENDAPIRKHA 901

Query: 778  VIDSDGLPYVGQMIHPGEPYC--SIYDKTTNSWRTNSRKGS--------------ESVFV 821
            +++SDGL  VG+ ++ GE Y   S  D++ +S   NS  G               +  ++
Sbjct: 902  LLESDGLAAVGEQVNAGEVYINKSTPDQSMSSGFPNSDAGRPVSYMPTPMTYKLPDPAYI 961

Query: 822  DYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGM 881
            D V V +  ++N  Q   +  R TR P +GDKFSSRHGQKGV   +    DMPF+  TG+
Sbjct: 962  DKVMVSVTENEN--QLVKVLTRQTRRPEVGDKFSSRHGQKGVVGIIADQADMPFTD-TGI 1018

Query: 882  RPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSL 941
             PD+I+NPH FPSRMT+  +LE VA K G L G+    T F  S                
Sbjct: 1019 NPDIIMNPHGFPSRMTVGKMLELVAGKAGVLAGQHGYGTCFGGSP--------------- 1063

Query: 942  VDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTM 1001
            V E+ ++L   GF+Y G + L SG+ G  L   +F GP+YYQ+L+HMV DK   R+ G  
Sbjct: 1064 VQEMSQILIDNGFSYGGKDYLTSGITGEALPFYVFTGPIYYQKLKHMVQDKMHSRARGPR 1123

Query: 1002 DQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLT 1061
              +TRQP +GR R GG+R GEMERD L+A+G + LL +RL   SD H  DVC  CG +  
Sbjct: 1124 AILTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLLLERLMISSDRHEIDVCEQCGFMGY 1183

Query: 1062 ATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKI 1121
              +                        C  C++S+ +  +A+PY  + L  EL +MN+  
Sbjct: 1184 LNW------------------------CQRCKSSRSVVKMAIPYAAKLLIQELMSMNVTA 1219

Query: 1122 TLQLGD 1127
             L+L D
Sbjct: 1220 RLKLDD 1225


>gi|317025401|ref|XP_001388998.2| DNA-directed RNA polymerase III subunit RET1 [Aspergillus niger CBS
            513.88]
          Length = 1226

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 345/1146 (30%), Positives = 518/1146 (45%), Gaps = 166/1146 (14%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
             CR    +Y   +  D  F+Y+     V+R+    G+ PVML++ +C L      ++  L
Sbjct: 184  ECRLRDTTYAAPIQVD--FEYVRGRQRVMRKGVAIGRMPVMLRSSKCVLANKTPAEMTVL 241

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
             E   + GGYFI+NG E+V    IL ++    + +      ++E            RK +
Sbjct: 242  NECPLDPGGYFIVNGTEKV----ILVQEQLSKNRIIVETDPKKEIVQASVTSSSNERKSK 297

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
            S + LK   L    V+     +     +P+ I+LKA+    D E+   L    D+ Y+  
Sbjct: 298  SYIVLKKDKLY---VKHNVLSED----IPIVILLKAMGIHTDKEML-LLVAGVDKVYQ-- 347

Query: 217  KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA--VAETV 274
                      E   I   E   L + T+ Q L  IG   +  I+  QS SY    V E V
Sbjct: 348  ----------EDFAINFEEAIKLGIYTQQQALDWIGARIK--INRKQSPSYRRTHVQEAV 395

Query: 275  --IRDYIFVHLNDNNDKFN----LLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
              I   I  H+   N  F      +  M +++    +  S+ D+ D L N+ + L G L+
Sbjct: 396  EAIASVIISHIEVKNMNFRPKAVYVAHMARRVLMAKNDASLVDDRDYLGNKRLELAGQLL 455

Query: 329  TIYLKEKLEDWLRK---GKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIET- 384
             +      ED  +K     K+  D++ N   + + F+  ++  +   + ++ +  +I T 
Sbjct: 456  ALLF----EDLFKKFCFDIKMNIDKVLNKRNRAEAFDAYSVITMHSNHITQGMNRAISTG 511

Query: 385  --MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKL 441
               LK  R+         +RAG T    RL+++  +     +   + F   R  S  R L
Sbjct: 512  NWSLKRFRM---------ERAGVTHVLSRLSYIAALGMMTRI--SSQFEKTRKVSGPRAL 560

Query: 442  LPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDF------SKMRTSILRV 495
             P  +G LCP  TP+GE CGL+ ++     + +  D  G +R+         ++T   + 
Sbjct: 561  QPSQFGMLCPADTPEGEACGLVKNLALMTHITTN-DEEGPVRNLIFMLGAEDIQTVGGKE 619

Query: 496  LIGVGM----IPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV 551
            L G G     I   P  +   P   L      R +G I S  +   + H +R    A  V
Sbjct: 620  LYGPGCYTISINGTPTALTRRPKYFLDAFRRLRRMGRI-SEFVSIYINHHQR----AVHV 674

Query: 552  IPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEE-------------SQNI 598
              DD   G +   L     G     +  + +  +RN ++  ++              +N 
Sbjct: 675  ATDD---GRICRPLIVVENGKSRVNA--QHLEKLRNGTMQFDDFLAQGLVEYLDVNEEND 729

Query: 599  ELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMY 658
             LI  +E+   E                 TH EI P  +L  VA L PY  HNQSPRN Y
Sbjct: 730  SLISIYEKDITET---------------TTHLEIEPFTVLGAVAGLIPYPHHNQSPRNTY 774

Query: 659  QCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLA 718
            QC M KQ +G        R D  LY +  PQ P+V++ T      D+ P G NAIVAV++
Sbjct: 775  QCAMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSRTIELTKYDQLPAGQNAIVAVMS 834

Query: 719  YTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DRGQKLFRRNKDAKSLHS 777
            Y+GYD+EDA++LNK SVDRG    Q+++    +L    N   DR       N      H+
Sbjct: 835  YSGYDIEDALVLNKGSVDRGFGRCQVFRKYVTNLKSYSNGTKDRLSGPTYENDAPIRKHA 894

Query: 778  VIDSDGLPYVGQMIHPGEPYC--SIYDKTTNSWRTNSRKGS--------------ESVFV 821
            +++SDGL  VG+ ++ GE Y   S  D++ +S   NS  G               +  ++
Sbjct: 895  LLESDGLAAVGEQVNAGEVYINKSTPDQSMSSGFPNSDAGRPVSYMPTPMTYKLPDPAYI 954

Query: 822  DYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGM 881
            D V V +  ++N  Q   +  R TR P +GDKFSSRHGQKGV   +    DMPF+  TG+
Sbjct: 955  DKVMVSVTENEN--QLVKVLTRQTRRPEVGDKFSSRHGQKGVVGIIADQADMPFTD-TGI 1011

Query: 882  RPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSL 941
             PD+I+NPH FPSRMT+  +LE VA K G L G+    T F  S                
Sbjct: 1012 NPDIIMNPHGFPSRMTVGKMLELVAGKAGVLAGQHGYGTCFGGSP--------------- 1056

Query: 942  VDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTM 1001
            V E+ ++L   GF+Y G + L SG+ G  L   +F GP+YYQ+L+HMV DK   R+ G  
Sbjct: 1057 VQEMSQILIDNGFSYGGKDYLTSGITGEALPFYVFTGPIYYQKLKHMVQDKMHSRARGPR 1116

Query: 1002 DQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLT 1061
              +TRQP +GR R GG+R GEMERD L+A+G + LL +RL   SD H  DVC  CG +  
Sbjct: 1117 AILTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLLLERLMISSDRHEIDVCEQCGFMGY 1176

Query: 1062 ATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKI 1121
              +                        C  C++S+ +  +A+PY  + L  EL +MN+  
Sbjct: 1177 LNW------------------------CQRCKSSRSVVKMAIPYAAKLLIQELMSMNVTA 1212

Query: 1122 TLQLGD 1127
             L+L D
Sbjct: 1213 RLKLDD 1218


>gi|134055102|emb|CAK43742.1| unnamed protein product [Aspergillus niger]
          Length = 1225

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 345/1146 (30%), Positives = 518/1146 (45%), Gaps = 166/1146 (14%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
             CR    +Y   +  D  F+Y+     V+R+    G+ PVML++ +C L      ++  L
Sbjct: 183  ECRLRDTTYAAPIQVD--FEYVRGRQRVMRKGVAIGRMPVMLRSSKCVLANKTPAEMTVL 240

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
             E   + GGYFI+NG E+V    IL ++    + +      ++E            RK +
Sbjct: 241  NECPLDPGGYFIVNGTEKV----ILVQEQLSKNRIIVETDPKKEIVQASVTSSSNERKSK 296

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
            S + LK   L    V+     +     +P+ I+LKA+    D E+   L    D+ Y+  
Sbjct: 297  SYIVLKKDKLY---VKHNVLSED----IPIVILLKAMGIHTDKEML-LLVAGVDKVYQ-- 346

Query: 217  KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA--VAETV 274
                      E   I   E   L + T+ Q L  IG   +  I+  QS SY    V E V
Sbjct: 347  ----------EDFAINFEEAIKLGIYTQQQALDWIGARIK--INRKQSPSYRRTHVQEAV 394

Query: 275  --IRDYIFVHLNDNNDKFN----LLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
              I   I  H+   N  F      +  M +++    +  S+ D+ D L N+ + L G L+
Sbjct: 395  EAIASVIISHIEVKNMNFRPKAVYVAHMARRVLMAKNDASLVDDRDYLGNKRLELAGQLL 454

Query: 329  TIYLKEKLEDWLRK---GKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIET- 384
             +      ED  +K     K+  D++ N   + + F+  ++  +   + ++ +  +I T 
Sbjct: 455  ALLF----EDLFKKFCFDIKMNIDKVLNKRNRAEAFDAYSVITMHSNHITQGMNRAISTG 510

Query: 385  --MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKL 441
               LK  R+         +RAG T    RL+++  +     +   + F   R  S  R L
Sbjct: 511  NWSLKRFRM---------ERAGVTHVLSRLSYIAALGMMTRI--SSQFEKTRKVSGPRAL 559

Query: 442  LPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDF------SKMRTSILRV 495
             P  +G LCP  TP+GE CGL+ ++     + +  D  G +R+         ++T   + 
Sbjct: 560  QPSQFGMLCPADTPEGEACGLVKNLALMTHITTN-DEEGPVRNLIFMLGAEDIQTVGGKE 618

Query: 496  LIGVGM----IPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV 551
            L G G     I   P  +   P   L      R +G I S  +   + H +R    A  V
Sbjct: 619  LYGPGCYTISINGTPTALTRRPKYFLDAFRRLRRMGRI-SEFVSIYINHHQR----AVHV 673

Query: 552  IPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEE-------------SQNI 598
              DD   G +   L     G     +  + +  +RN ++  ++              +N 
Sbjct: 674  ATDD---GRICRPLIVVENGKSRVNA--QHLEKLRNGTMQFDDFLAQGLVEYLDVNEEND 728

Query: 599  ELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMY 658
             LI  +E+   E                 TH EI P  +L  VA L PY  HNQSPRN Y
Sbjct: 729  SLISIYEKDITET---------------TTHLEIEPFTVLGAVAGLIPYPHHNQSPRNTY 773

Query: 659  QCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLA 718
            QC M KQ +G        R D  LY +  PQ P+V++ T      D+ P G NAIVAV++
Sbjct: 774  QCAMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSRTIELTKYDQLPAGQNAIVAVMS 833

Query: 719  YTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DRGQKLFRRNKDAKSLHS 777
            Y+GYD+EDA++LNK SVDRG    Q+++    +L    N   DR       N      H+
Sbjct: 834  YSGYDIEDALVLNKGSVDRGFGRCQVFRKYVTNLKSYSNGTKDRLSGPTYENDAPIRKHA 893

Query: 778  VIDSDGLPYVGQMIHPGEPYC--SIYDKTTNSWRTNSRKGS--------------ESVFV 821
            +++SDGL  VG+ ++ GE Y   S  D++ +S   NS  G               +  ++
Sbjct: 894  LLESDGLAAVGEQVNAGEVYINKSTPDQSMSSGFPNSDAGRPVSYMPTPMTYKLPDPAYI 953

Query: 822  DYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGM 881
            D V V +  ++N  Q   +  R TR P +GDKFSSRHGQKGV   +    DMPF+  TG+
Sbjct: 954  DKVMVSVTENEN--QLVKVLTRQTRRPEVGDKFSSRHGQKGVVGIIADQADMPFTD-TGI 1010

Query: 882  RPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSL 941
             PD+I+NPH FPSRMT+  +LE VA K G L G+    T F  S                
Sbjct: 1011 NPDIIMNPHGFPSRMTVGKMLELVAGKAGVLAGQHGYGTCFGGSP--------------- 1055

Query: 942  VDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTM 1001
            V E+ ++L   GF+Y G + L SG+ G  L   +F GP+YYQ+L+HMV DK   R+ G  
Sbjct: 1056 VQEMSQILIDNGFSYGGKDYLTSGITGEALPFYVFTGPIYYQKLKHMVQDKMHSRARGPR 1115

Query: 1002 DQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLT 1061
              +TRQP +GR R GG+R GEMERD L+A+G + LL +RL   SD H  DVC  CG +  
Sbjct: 1116 AILTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLLLERLMISSDRHEIDVCEQCGFMGY 1175

Query: 1062 ATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKI 1121
              +                        C  C++S+ +  +A+PY  + L  EL +MN+  
Sbjct: 1176 LNW------------------------CQRCKSSRSVVKMAIPYAAKLLIQELMSMNVTA 1211

Query: 1122 TLQLGD 1127
             L+L D
Sbjct: 1212 RLKLDD 1217


>gi|350638131|gb|EHA26487.1| hypothetical protein ASPNIDRAFT_171679 [Aspergillus niger ATCC 1015]
          Length = 1201

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 345/1145 (30%), Positives = 518/1145 (45%), Gaps = 166/1145 (14%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR    +Y   +  D  F+Y+     V+R+    G+ PVML++ +C L      ++  L 
Sbjct: 160  CRLRDTTYAAPIQVD--FEYVRGRQRVMRKGVAIGRMPVMLRSSKCVLANKTPAEMTVLN 217

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            E   + GGYFI+NG E+V    IL ++    + +      ++E            RK +S
Sbjct: 218  ECPLDPGGYFIVNGTEKV----ILVQEQLSKNRIIVETDPKKEIVQASVTSSSNERKSKS 273

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
             + LK   L    V+     +     +P+ I+LKA+    D E+   L    D+ Y+   
Sbjct: 274  YIVLKKDKLY---VKHNVLSED----IPIVILLKAMGIHTDKEML-LLVAGVDKVYQ--- 322

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA--VAETV- 274
                     E   I   E   L + T+ Q L  IG   +  I+  QS SY    V E V 
Sbjct: 323  ---------EDFAINFEEAIKLGIYTQQQALDWIGARIK--INRKQSPSYRRTHVQEAVE 371

Query: 275  -IRDYIFVHLNDNNDKFN----LLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
             I   I  H+   N  F      +  M +++    +  S+ D+ D L N+ + L G L+ 
Sbjct: 372  AIASVIISHIEVKNMNFRPKAVYVAHMARRVLMAKNDASLVDDRDYLGNKRLELAGQLLA 431

Query: 330  IYLKEKLEDWLRK---GKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIET-- 384
            +      ED  +K     K+  D++ N   + + F+  ++  +   + ++ +  +I T  
Sbjct: 432  LLF----EDLFKKFCFDIKMNIDKVLNKRNRAEAFDAYSVITMHSNHITQGMNRAISTGN 487

Query: 385  -MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLL 442
              LK  R+         +RAG T    RL+++  +     +   + F   R  S  R L 
Sbjct: 488  WSLKRFRM---------ERAGVTHVLSRLSYIAALGMMTRI--SSQFEKTRKVSGPRALQ 536

Query: 443  PESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDF------SKMRTSILRVL 496
            P  +G LCP  TP+GE CGL+ ++     + +  D  G +R+         ++T   + L
Sbjct: 537  PSQFGMLCPADTPEGEACGLVKNLALMTHITTN-DEEGPVRNLIFMLGAEDIQTVGGKEL 595

Query: 497  IGVGM----IPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVI 552
             G G     I   P  +   P   L      R +G I S  +   + H +R    A  V 
Sbjct: 596  YGPGCYTISINGTPTALTRRPKYFLDAFRRLRRMGRI-SEFVSIYINHHQR----AVHVA 650

Query: 553  PDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEE-------------SQNIE 599
             DD   G +   L     G     +  + +  +RN ++  ++              +N  
Sbjct: 651  TDD---GRICRPLIVVENGKSRVNA--QHLEKLRNGTMQFDDFLAQGLVEYLDVNEENDS 705

Query: 600  LIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQ 659
            LI  +E+   E                 TH EI P  +L  VA L PY  HNQSPRN YQ
Sbjct: 706  LISIYEKDITET---------------TTHLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQ 750

Query: 660  CQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAY 719
            C M KQ +G        R D  LY +  PQ P+V++ T      D+ P G NAIVAV++Y
Sbjct: 751  CAMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSRTIELTKYDQLPAGQNAIVAVMSY 810

Query: 720  TGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DRGQKLFRRNKDAKSLHSV 778
            +GYD+EDA++LNK SVDRG    Q+++    +L    N   DR       N      H++
Sbjct: 811  SGYDIEDALVLNKGSVDRGFGRCQVFRKYVTNLKSYSNGTKDRLSGPTYENDAPIRKHAL 870

Query: 779  IDSDGLPYVGQMIHPGEPYC--SIYDKTTNSWRTNSRKGS--------------ESVFVD 822
            ++SDGL  VG+ ++ GE Y   S  D++ +S   NS  G               +  ++D
Sbjct: 871  LESDGLAAVGEQVNAGEVYINKSTPDQSMSSGFPNSDAGRPVSYMPTPMTYKLPDPAYID 930

Query: 823  YVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMR 882
             V V +  ++N  Q   +  R TR P +GDKFSSRHGQKGV   +    DMPF+  TG+ 
Sbjct: 931  KVMVSVTENEN--QLVKVLTRQTRRPEVGDKFSSRHGQKGVVGIIADQADMPFTD-TGIN 987

Query: 883  PDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLV 942
            PD+I+NPH FPSRMT+  +LE VA K G L G+    T F  S                V
Sbjct: 988  PDIIMNPHGFPSRMTVGKMLELVAGKAGVLAGQHGYGTCFGGSP---------------V 1032

Query: 943  DELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMD 1002
             E+ ++L   GF+Y G + L SG+ G  L   +F GP+YYQ+L+HMV DK   R+ G   
Sbjct: 1033 QEMSQILIDNGFSYGGKDYLTSGITGEALPFYVFTGPIYYQKLKHMVQDKMHSRARGPRA 1092

Query: 1003 QITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTA 1062
             +TRQP +GR R GG+R GEMERD L+A+G + LL +RL   SD H  DVC  CG +   
Sbjct: 1093 ILTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLLLERLMISSDRHEIDVCEQCGFMGYL 1152

Query: 1063 TFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKIT 1122
             +                        C  C++S+ +  +A+PY  + L  EL +MN+   
Sbjct: 1153 NW------------------------CQRCKSSRSVVKMAIPYAAKLLIQELMSMNVTAR 1188

Query: 1123 LQLGD 1127
            L+L D
Sbjct: 1189 LKLDD 1193


>gi|164657975|ref|XP_001730113.1| hypothetical protein MGL_2495 [Malassezia globosa CBS 7966]
 gi|159104008|gb|EDP42899.1| hypothetical protein MGL_2495 [Malassezia globosa CBS 7966]
          Length = 517

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 233/532 (43%), Positives = 310/532 (58%), Gaps = 85/532 (15%)

Query: 662  MAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTG 721
            M KQTMG    A+  R D KLY LQT QTPIVR + + KY +D++P GTNAIVAV++YTG
Sbjct: 1    MGKQTMGTPSGAIARRTDNKLYRLQTGQTPIVRPSLHNKYAMDDFPNGTNAIVAVISYTG 60

Query: 722  YDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD-----------------DGNKVDRGQK 764
            YDMEDAMILNKS+ +RG  +G +Y++E I L D                     V  G  
Sbjct: 61   YDMEDAMILNKSAHERGFGYGSVYKSEVIHLRDMMGGAGSGSGSSRGGRAGALPVHFGFG 120

Query: 765  LFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYV 824
               R  DA+     +D+DGLP+VG  +  G P  + +++ T        KG E+ +VD V
Sbjct: 121  PDIRADDAR--REQLDADGLPFVGTFMTRGTPLYACFNEATGRTIVKRYKGDEAAYVDTV 178

Query: 825  AVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRP 883
             V   ++ +   Q   I FR  R+P+IGDKFSSRHGQKGVCSQ WP +DMPFS  +GM+P
Sbjct: 179  RVIGSDAGDTECQHVQIMFRIPRSPVIGDKFSSRHGQKGVCSQKWPAVDMPFS-ESGMQP 237

Query: 884  DLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVD 943
            D+IINPHAFPSRMTI ML+ES+A K G++HG   DATP+              E  + V 
Sbjct: 238  DVIINPHAFPSRMTIGMLIESMAGKAGAMHGLSQDATPWTFG-----------EHDTPVS 286

Query: 944  ELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQ 1003
              GE LR  G+NY G E +YSG+ G EL  +I++G VYYQRLRHMV+DKFQVR+TG +  
Sbjct: 287  YFGEQLRAAGYNYMGNEPMYSGITGQELRADIYLGVVYYQRLRHMVNDKFQVRTTGPVHA 346

Query: 1004 ITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTAT 1063
            +TRQP+KGRKR GGIRFGEMERD+LLAHG ++LL DRL  CSDY  A VC  CGS+++ +
Sbjct: 347  LTRQPVKGRKRAGGIRFGEMERDALLAHGTSFLLQDRLLNCSDYTTAYVCRTCGSLISLS 406

Query: 1064 F---------------------------IHPQK-----------------------RAIR 1073
            +                            HP+                        +A+R
Sbjct: 407  YDDTAGVHVPGLGVVQTIEHTSSSKNNSSHPEAVAHVPLGPHGEYCRVCRRAAQAGQAVR 466

Query: 1074 EIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
             +      R P+    +  + +  ++ +A+PYV +YL AELAAM ++++  +
Sbjct: 467  RLDASKRVRMPRS---NVLRRAGDLDVIAVPYVLKYLVAELAAMGLRMSFAI 515


>gi|406604716|emb|CCH43851.1| DNA-directed RNA polymerase III subunit [Wickerhamomyces ciferrii]
          Length = 1152

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 345/1196 (28%), Positives = 540/1196 (45%), Gaps = 182/1196 (15%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
            F  ++ LV+ H++SF+Y +D  L ++                                  
Sbjct: 60   FLKVKGLVKQHLDSFNYFVDVDLKKIIKANEKVLSDVDPDFYIKYLDIRVGEASPAARNN 119

Query: 37   -----HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQ 91
                  CR   ++Y+  +  DVE  Y      ++ +    G+ P+ML++ +C L GA   
Sbjct: 120  MLPPHECRLRDMTYSAPIYVDVE--YTRGRKIIMHKGLEIGKMPIMLRSNKCILDGASEA 177

Query: 92   KLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC 151
            K+ SL E   + GGYFI+NG E+V    IL ++    + +     ++++           
Sbjct: 178  KMASLNECPLDPGGYFIVNGTEKV----ILIQEQLSKNRIIVEADEKKQIVQASVTSSTH 233

Query: 152  VRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDE 211
             RK ++ V  K     N  + L      +E  +P+ IVLKA    +DLEI   L C  D 
Sbjct: 234  ERKSKTYVVTK-----NDKIYLKHNSISEE--VPIVIVLKAAGIISDLEIM-QLVCGDDA 285

Query: 212  KYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDG---LQSESYY 268
             Y+            +   I   E   + + T+ Q L+ IG   + +      +  E   
Sbjct: 286  AYQ------------DSFAINFEECAKVGIYTQQQALEFIGAKVKTMRRAKLSILQEGIE 333

Query: 269  AVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
            A+A TVI  ++ V+  D  +K   +  M +++   + +  + D+ D + N+ + L G L+
Sbjct: 334  AIATTVIA-HLTVNDLDFREKALYIALMTRRVVMAMHNPKMVDDRDYVGNKRLELAGQLM 392

Query: 329  TIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKT 388
            ++  ++  + +    K  I   +    +  +F  L NI        S  I T +   + T
Sbjct: 393  SLLFEDLFKKFNTDFKANIDKILRKPNRATEFDALLNINI-----HSNNITTGLNRAIST 447

Query: 389  GRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPESWG 447
            G  + +      +RAG T    RL+++  +     +   + F   R  S  R L P  +G
Sbjct: 448  GNWSLKRFK--MERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRKVSGPRALQPSQFG 503

Query: 448  FLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPK 507
             LC   TP+GE CGL+ ++     + +         D  +     L  LIGV  I  +  
Sbjct: 504  MLCTSDTPEGEACGLVKNLALMTHITT---------DDEEEPIKKLCYLIGVEEISVIDS 554

Query: 508  LVKSGPPAVLSVLLDGRVVGV--IPSSEIEKVVAHLRRL-KVSAASVIPDDLEVGYVPLS 564
               +       V L+G ++G    P+  +  +  +LRR  KVS            ++ + 
Sbjct: 555  ---ASLHDNFGVYLNGTIIGTTRFPTKFVS-LFRNLRRTGKVSE-----------FISIY 599

Query: 565  LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQ------------NIELIGPFEQVFME-I 611
            +      +++ T   +  RP+  I + + ES+             ++     +Q  +E +
Sbjct: 600  INSHQKAVHIATDGGRICRPL--IIIENGESKVKAHHLLKLKQGKLQFDDFLKQGLVEYL 657

Query: 612  RCPDGGDG-----GRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQT 666
               +  D       R     ATH EI P  +L  VA L PY  HNQSPRN YQC M KQ 
Sbjct: 658  DVNEENDCYIALYERDITEKATHLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQA 717

Query: 667  MGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMED 726
            +G        R D  LY +  PQ P+V++ T      D+ P G NA VAV++Y+GYD+ED
Sbjct: 718  IGAIAYNQFHRIDTLLYLMVYPQQPMVKSKTIELIDYDKLPAGQNATVAVMSYSGYDIED 777

Query: 727  AMILNKSSVDRGMCHGQIYQTETIDLSDDGN---KVDRGQKLFRRNKDAKSLHSVIDSDG 783
            A++LNKSS+DRG    Q+ +  T  L    N    +  G ++ + N +    H+ +  DG
Sbjct: 778  ALVLNKSSIDRGFGRCQVLRKNTTVLKRYPNHTKDIIAGMRV-KDNGEPTFQHASLGPDG 836

Query: 784  LPYVGQMIHPGEPYC----------SIYDKTTNSWRTNS--RKGSESVFVDYVAVDMKNS 831
            L  VG  +  G+ Y           SI ++ T  +R      K  E  ++D V   M  S
Sbjct: 837  LAEVGTRVESGQVYINKSIPTNAADSIMNQDTGEYRETPVVYKAPEPSYIDQVM--MTTS 894

Query: 832  KNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHA 891
             N  +   +  R TR P +GDKFSSRHGQKGVC  +    D+PF+   G+ PD+I+NPH 
Sbjct: 895  DNDQELIKVLLRQTRRPELGDKFSSRHGQKGVCGIIVQQEDLPFND-DGISPDIIMNPHG 953

Query: 892  FPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRT 951
            FPSRMT+  +LE V+ K G L+G     T F        G    D SK L+D+       
Sbjct: 954  FPSRMTVGKMLELVSGKAGVLNGSLEYGTCFG-------GSDLEDMSKILMDK------- 999

Query: 952  CGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKG 1011
             GFNY G ++LYSG+ G  L   IF GP+YYQ+L+HMV DK   R+ G    +TRQP +G
Sbjct: 1000 -GFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEG 1058

Query: 1012 RKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRA 1071
            R R GG+R GEMERD ++A+GA+ LL +RL   SD    D+C+ CG +    +       
Sbjct: 1059 RSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFDVDICNKCGLMGYNGW------- 1111

Query: 1072 IREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
                             C +C+ ++ +  + +PY  + L  EL +MNI   L+LGD
Sbjct: 1112 -----------------CTSCKNAENVIRMQIPYAAKLLFQELLSMNIAPRLKLGD 1150


>gi|312374784|gb|EFR22267.1| hypothetical protein AND_15508 [Anopheles darlingi]
          Length = 1134

 Score =  421 bits (1082), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 336/1145 (29%), Positives = 522/1145 (45%), Gaps = 169/1145 (14%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
             CR   ++Y+  +  DVE  Y      VVR     G+ P+ML++  C L G    +L  +
Sbjct: 100  ECRLRDMTYSAPITVDVE--YTRGTQRVVRNGLLIGRMPIMLRSSNCILNGKSDYELSQV 157

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC--VRK 154
             E   + GGYFI+ G E+V   +++ +Q     M+   +            +I+C     
Sbjct: 158  NECPMDPGGYFIIRGTEKV---ILIQEQLSWNKMITEDYNG----------LIQCQVTSS 204

Query: 155  DQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYK 214
                 +  + Y  +G   L      +E  +PV I+LKA+   +D EI   +    D++ +
Sbjct: 205  THEKKSRTILYSKHGRYYLKHNSMTEE--IPVAIILKAMGVASDQEIMQLVGI--DQETQ 260

Query: 215  KEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAET- 273
            K            R    L E     + T+ + L+++G           +  Y   A+  
Sbjct: 261  K------------RFAPSLLEAAKHKVYTQQRALEYMGSKLIAKRFTTAATKYRTTADEA 308

Query: 274  --VIRDYIFVHLNDNNDKFNL----LIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
              ++   I  H+   +  F +    +  M++++ +     S  D+ D   N+ + L G L
Sbjct: 309  RDLLATTILAHVPVRSFNFQVKAIYVALMIRRVMAAELDRSAVDDRDYYGNKRLELAGSL 368

Query: 328  ITIYLKEKLE--DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
            +++  ++ L+  +W     K+I D+     K   F    ++++ +       I + +ET 
Sbjct: 369  LSLMFEDLLKRFNW---ELKMIADKNIPKIKAAQFDVGKHMREAL-------ITSGLETA 418

Query: 386  LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPE 444
            + TG    +      +RAG T    RL+++  +     V+  + F   R  S  R L P 
Sbjct: 419  ISTGNWTIKRFK--MERAGVTQVLSRLSYISALGMMTRVN--SQFEKTRKVSGPRSLQPS 474

Query: 445  SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
             WG LCP  TP+GE CGL+ ++     + +  D    IR         +R LIG   I +
Sbjct: 475  QWGMLCPSDTPEGEACGLVKNLALMTHITTEVDEEPVIRLAYNAGVEDIR-LIGGETINN 533

Query: 505  LPKLVKSGPPAVLSVLLDGRVVGV-IPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL 563
                     P V  V ++G ++GV I    + +V   +RR  +  A          +V +
Sbjct: 534  ---------PKVFMVFINGNILGVTIAYRRLVEVFRMMRRRGLIGA----------FVSI 574

Query: 564  SLGGAYPGLYLFTSPPKFVRP--VRNISLPSEESQNIELIG----PFEQVFME--IRCPD 615
                    +Y+ T   +  RP  +    LP    ++IE +      F+    +  I   D
Sbjct: 575  HTSFTQRCVYIHTDGGRLCRPYIIVQAGLPLVLQEHIEQLKLGLRKFDDFLHDGLIEYLD 634

Query: 616  GGDGG-------RRNAFP--ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQT 666
              +          R+  P   TH EI P  +L V A L PY  HNQSPRN YQC M KQ 
Sbjct: 635  VNEENDSFIAYQERDIDPEKTTHLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQCAMGKQA 694

Query: 667  MGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMED 726
            MG      K R D  +Y++  PQTP+VR+ T      D+ P G NA VAV++Y+GYD+ED
Sbjct: 695  MGIIGYNQKNRIDTLMYNIVYPQTPMVRSRTIELTNFDKLPAGQNATVAVMSYSGYDIED 754

Query: 727  AMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DRGQKLFRRNKDAKSL--HSVIDSDG 783
            A+ILNK+S+DRG     +Y+     +    N+  DR     + +   K +  H  +D+DG
Sbjct: 755  ALILNKASIDRGYGRCLVYKNSKCTIKRYSNQTFDRIMGPMKDSLTGKVIARHECLDTDG 814

Query: 784  LPYVGQMIHPGEPYC---SIYDKTTNSWRTN--------------------SRKGSESVF 820
            +      + PGE      ++ +K   + ++N                    + KG+E  +
Sbjct: 815  I------VSPGERLVCKQTMVNKEMPAVKSNNPIEQKESGQQPIAYSAVPITYKGTEPSY 868

Query: 821  VDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTG 880
             + V V   N +    K  I  R TR P IGDKFSSRHGQKGV   +    D+PF+   G
Sbjct: 869  AERVLVSTNNEEEFLVK--ILLRQTRRPEIGDKFSSRHGQKGVTGLIVDQEDLPFNDY-G 925

Query: 881  MRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKS 940
            M PD+++NPH FPSRMT+   LE + +K G L GKF   T F           G  + + 
Sbjct: 926  MAPDMVMNPHGFPSRMTVGKTLELLGSKAGVLEGKFHYGTAF-----------GGSKCQD 974

Query: 941  LVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGT 1000
            L DEL +     GFNY G +V YSG+ G  L   I+ GPVYYQ+L+HMV DK   R+ G 
Sbjct: 975  LQDELFQN----GFNYLGKDVFYSGITGEPLEVYIYSGPVYYQKLKHMVQDKMHARARGP 1030

Query: 1001 MDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVL 1060
               +TRQP +GR R GG+R GEMERD L+++GA+ L+ +RL   SD    DVC++CG + 
Sbjct: 1031 RAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMISSDAFDVDVCNVCGRLA 1090

Query: 1061 TATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIK 1120
             +++                        CH C++S  +  ++MPY  + L  EL +MNI 
Sbjct: 1091 YSSW------------------------CHNCRSSASVSKISMPYACKLLFQELTSMNIV 1126

Query: 1121 ITLQL 1125
              L+L
Sbjct: 1127 PRLKL 1131


>gi|149238948|ref|XP_001525350.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Lodderomyces
            elongisporus NRRL YB-4239]
 gi|146450843|gb|EDK45099.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Lodderomyces
            elongisporus NRRL YB-4239]
          Length = 1157

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 347/1219 (28%), Positives = 546/1219 (44%), Gaps = 210/1219 (17%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
            F  ++ LV+ H++SF+Y +D  L ++                                  
Sbjct: 47   FLKIKGLVKQHLDSFNYFVDTDLKKILKANSLVLSDVDPDFYVKYLDIRVGHKSTSAPGT 106

Query: 37   --------HCRQAKISYTGKLMADVEFQYLDAGSPVVRER-FNFGQFPVMLKTRRCHLQG 87
                     CR   ++Y+  +  DVE+     G  ++R      G+ PVML++ +C L G
Sbjct: 107  KEVILPPHECRLRDLTYSAPIYVDVEYT---RGRKIIRHNDLEIGRMPVMLRSNKCMLDG 163

Query: 88   ADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAV 147
             D +++  + E   + GGYF++NG E+V   +++ +Q     ++  +  D ++G    +V
Sbjct: 164  LDERQMAQVDECPLDPGGYFVVNGTEKV---ILVQEQLSKNRIIVEA--DDKKGIVQASV 218

Query: 148  VIRC-VRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLT 206
                  RK ++ V  K     NG + L     G++  +P+ IVLKA   T+DLEI   L 
Sbjct: 219  TSSTHERKSKTYVITK-----NGKIYLKHNSIGED--VPIVIVLKAAGITSDLEIL-QLV 270

Query: 207  CCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ-------PVI 259
            C  +  Y+            +   +   E   L + T+ Q L ++G+  +       P +
Sbjct: 271  CGSNPHYQ------------DLFVVNFEEAARLEVFTQQQALLYLGKRVKTIRRAGAPKL 318

Query: 260  DGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIF----MLQKLFSLVDHTSVSDNPDS 315
              LQ E   A+A T++      HL  +N +F    F    M +++   + +  + D+ D 
Sbjct: 319  SQLQ-EGIEAIATTIV-----AHLTVSNLQFKEKAFYMAMMARRVVMAMHNPKMVDDRDY 372

Query: 316  LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPS 375
            + N+ + L G L+++  ++  + +    K  I   ++   +  +F  L +I        S
Sbjct: 373  VGNKRLELAGQLMSLLFEDLFKKFNSDFKANIDKILKKPSRTTEFDALLSINI-----HS 427

Query: 376  KQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
              I   +   + TG  + +      +RAG T    RL+++  +     +   + F   R 
Sbjct: 428  NNITMGLNRAISTGNWSLKRFK--MERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRK 483

Query: 436  TS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILR 494
             S  R L P  +G LC   TP+GE CGL+ ++     + +         D  ++    L 
Sbjct: 484  VSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITT---------DDEELPIKKLC 534

Query: 495  VLIGVGMIPSL--PKLVKSGPPAVLSVLLDGRVVGV--IPSSEIEKVVAHLRRL-KVSAA 549
            + +G   I  L    L   G      V L+G ++G    P   +     HLRR  KVSA 
Sbjct: 535  IALGCESILGLDSSTLHVDGN---FGVFLNGTLIGATRFPVKFVNDF-RHLRRAGKVSA- 589

Query: 550  SVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV----RNISLPSEESQNIELIGP-- 603
                      ++ +     +  ++L T   +  RP+    +N S    E     L G   
Sbjct: 590  ----------FISIYTNTHHQAVHLATDGGRICRPLIIVEKNKSKVQSEHLKKLLRGEWQ 639

Query: 604  FEQVFME---------------IRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYS 648
            F+    E               I   +   G   NA   TH EI P  +L  VA L PY 
Sbjct: 640  FDDFLREGLVEYLDVNEENDSLIALYEKDIGSNANA-TVTHLEIEPFTVLGAVAGLIPYP 698

Query: 649  DHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPT 708
             HNQSPRN YQC M KQ +G        R D  LY +  PQ P+V+T T      D+ P 
Sbjct: 699  HHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYFMVYPQQPMVKTKTIELINYDKLPA 758

Query: 709  GTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRR 768
            G NA VAV++Y+GYD+EDA++LNKSS+DRG    Q+ +  T+ L    N         R 
Sbjct: 759  GQNATVAVMSYSGYDIEDALVLNKSSLDRGFGRCQVVRKNTVQLKKYPNHTKDILSGMRV 818

Query: 769  NKDAKSL--HSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNS-------------- 812
            +++ + +  H  +  DGL  VG  I  G+ + + +  T +   T +              
Sbjct: 819  DENNEPIFPHQALGPDGLGEVGSRIENGQVFANKFVPTNSGESTFAGGMQQQPQAESHRE 878

Query: 813  ----RKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLW 868
                 KG E  +VD V   M  S N      +  R TR P +GDKFSSRHGQKGVC  + 
Sbjct: 879  AAQYYKGPEPSYVDQVM--MSVSDNDQALVKVLLRQTRRPELGDKFSSRHGQKGVCGIIV 936

Query: 869  PDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKK 928
               D+PF+   G+ PD+I+NPH FPSRMT+  ++E ++ K G L+G     T F  S   
Sbjct: 937  QHEDLPFND-DGISPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGSLEYGTCFGGSK-- 993

Query: 929  TNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHM 988
                         ++++ ++L + GF+Y G ++LYSG+ G  L   IF GP+YYQ+L+HM
Sbjct: 994  -------------LEDMSKILVSKGFSYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHM 1040

Query: 989  VSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYH 1048
            V DK   R+ G    +TRQP +GR R GG+R GEMERD ++A+GA+ LL +RL   SD  
Sbjct: 1041 VLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAF 1100

Query: 1049 VADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFR 1108
              DVC+ CG +   ++                        C  C+ S+ +  + +PY  +
Sbjct: 1101 EVDVCNKCGLMGYNSW------------------------CTTCKGSENIIKMTIPYAAK 1136

Query: 1109 YLAAELAAMNIKITLQLGD 1127
             L  EL +MNI   L+LGD
Sbjct: 1137 LLFQELLSMNIAPRLRLGD 1155


>gi|172383|gb|AAB59324.1| RNA polymerase III [Saccharomyces cerevisiae]
          Length = 1149

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 347/1200 (28%), Positives = 539/1200 (44%), Gaps = 186/1200 (15%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
            F  ++ LV+ H++SF+Y +D  L ++                                  
Sbjct: 51   FLKVKGLVKQHLDSFNYFVDTDLKKIIKANQLILSDVDPEFYLKYVDIRVGKKSSSSTKD 110

Query: 37   ------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADS 90
                   CR   ++Y+  +  D+E  Y    + ++ +    G+ P+ML++ +C L  AD 
Sbjct: 111  YLTPPHECRLRDMTYSAPIYVDIE--YTRGRNIIMHKDVEIGRMPIMLRSNKCILYDADE 168

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
             K+  L E   + GGYFI+NG E+V   +++ +Q     ++  +  D +EG    +V   
Sbjct: 169  SKMAKLNECPLDPGGYFIVNGTEKV---ILVQEQLSKNRIIVEA--DEKEGIVQASVTSS 223

Query: 151  C-VRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
               RK ++ V  K     NG + L      +E  +P+ IVLKA    +DLEI   L C  
Sbjct: 224  THERKSKTYVITK-----NGKIYLKHNSIAEE--IPIAIVLKACGILSDLEIM-QLVCGN 275

Query: 210  DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV----IDGLQSE 265
            D  Y+            +   + L E   L + T+ Q L++IG   + +    +  LQ E
Sbjct: 276  DSSYQ------------DIFAVNLEESSKLDIYTQQQALEYIGAKVKTMRRQKLTILQ-E 322

Query: 266  SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPG 325
               A+A TVI  ++ V   D  +K   +  M +++   + +  + D+ D + N+ + L G
Sbjct: 323  GIEAIATTVIA-HLTVEALDFREKALYIAMMTRRVVMAMYNPKMIDDRDYVGNKRLELAG 381

Query: 326  HLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
             LI++  ++  + +    K  I   ++   +  ++  L +I        S  I + +   
Sbjct: 382  QLISLLFEDLFKKFNNDFKLSIDKVLKKPNRAMEYDALLSINV-----HSNNITSGLNRA 436

Query: 386  LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPE 444
            + TG  + +      +RAG T    RL+++  +     +   + F   R  S  R L P 
Sbjct: 437  ISTGNWSLKRFK--MERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRKVSGPRALQPS 492

Query: 445  SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
             +G LC   TP+GE CGL+ ++     + +         D  +     L  ++GV  I  
Sbjct: 493  QFGMLCTADTPEGEACGLVKNLALMTHITT---------DDEEEPIKKLCYVLGVEDI-- 541

Query: 505  LPKLVKSGPPAV-LSVLLDGRVVGVI--PSSEIEKVVAHLRRL-KVSAASVIPDDLEVGY 560
               L+ S    +   V L+G ++G I  P+  + +   HLRR  KVS            +
Sbjct: 542  --TLIDSASLHLNYGVYLNGTLIGSIRFPTKFVTQF-RHLRRTGKVSE-----------F 587

Query: 561  VPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFE-----QVFMEIRCPD 615
            + +        +++ T   +  RP+  +S      ++I L    +       F+++   +
Sbjct: 588  ISIYSNSHQMAVHIATDGGRICRPLIIVSDGQSRVKDIHLRKLLDGELDFDDFLKLGLVE 647

Query: 616  GGDGGRRN----------AFPA-THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAK 664
              D    N            P+ TH EI P  +L  VA L PY  HNQSPRN YQC M K
Sbjct: 648  YLDVNEENDSYIALYEKDIVPSMTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGK 707

Query: 665  QTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDM 724
            Q +G        R D  LY +  PQ P+V+T T      D+ P G NA VAV++Y+GYD+
Sbjct: 708  QAIGAIAYNQFKRIDTLLYLMTYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDI 767

Query: 725  EDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDR--GQKLFRRNKDAKSLHSVIDSD 782
            EDA++LNKSS+DRG    +  +  T  L    N      G      N D    H  +  D
Sbjct: 768  EDALVLNKSSIDRGFGRCETRRKTTTVLKRYANHTQDIIGGMRVDENGDPIWQHQSLGPD 827

Query: 783  GLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR---------------KGSESVFVDYVAVD 827
            GL  VG  +  G+ Y +    T ++   N                 +G E   +D V   
Sbjct: 828  GLGEVGMKVQSGQIYINKSVPTNSADAPNPNNVNVQTQYREAPVIYRGPEPSHIDQVM-- 885

Query: 828  MKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLII 887
            M  S N      +  R  R P +GDKFSSRHGQKGVC  +    DMPF+   G+ PD+I+
Sbjct: 886  MSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVKQEDMPFND-QGIVPDIIM 944

Query: 888  NPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGE 947
            NPH FPSRMT+  ++E ++ K G L+G     T F        G    D SK LVD+   
Sbjct: 945  NPHGFPSRMTVGKMIELISGKAGVLNGTLEYGTCFG-------GSKLEDMSKILVDQ--- 994

Query: 948  MLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQ 1007
                 GFNY G ++LYSG+ G  L   IF GP+YYQ+L+HMV DK   R+ G    +TRQ
Sbjct: 995  -----GFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQ 1049

Query: 1008 PIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHP 1067
            P +GR R GG+R GEMERD ++A+GA+ LL +RL   SD    DVC  CG +  + +   
Sbjct: 1050 PTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCDKCGLMGYSGW--- 1106

Query: 1068 QKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
                                 C  C++++ +  + +PY  + L  EL +MNI   L+L D
Sbjct: 1107 ---------------------CTTCKSAENIIKMTIPYAAKLLFQELLSMNIAPRLRLED 1145


>gi|313235073|emb|CBY10732.1| unnamed protein product [Oikopleura dioica]
          Length = 887

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 246/794 (30%), Positives = 418/794 (52%), Gaps = 70/794 (8%)

Query: 38  CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
           CRQ K  YT  +        L +G   V  + +  Q P+M+ + +CHL+G   ++LV+ K
Sbjct: 109 CRQKKTDYTAPVHVTFNLINLSSGETQVVTKKDLLQMPLMVMSSKCHLRGLSPEELVARK 168

Query: 98  EEAAEMGGYFILNGLERVFRSVIL--PKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
           E+  E+GGYFI +G E+V R + +   ++N+P+ + R+ ++ RREGYTD  ++IRC+   
Sbjct: 169 EDHFEIGGYFIASGNEKVIRLLNMNRTRRNFPLGLRRNGWKRRREGYTDAGLMIRCMDNW 228

Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
           + +  + ++      + + F++Q + + LP+  V++AL    DLEI+        ++   
Sbjct: 229 ERTSNMNVHVTKTNEMEVVFYIQKQLFHLPMMTVVRALTSWTDLEIYREFMQTMSDEPNY 288

Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
           +        V   +K ++     +     ++  + +G+ F+        +S     +  +
Sbjct: 289 DSA------VKRMLKKLVNADNMVKRNDAVKLSKFLGQSFRIFDICPAWKSDVEAGQAFL 342

Query: 276 RDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEK 335
           + Y  ++LN++ DK      M +K F +  +T  +D+ DS ++ ++LLPGHL      E 
Sbjct: 343 KRYCLIYLNNDEDKVRAFALMARKAFRISHNTCATDDIDSPESHDVLLPGHLFQSMTLEF 402

Query: 336 LEDWLRKGKKLI-----------QDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIET 384
            E + R    ++            DE+  N   F    + N+ +              + 
Sbjct: 403 FESYQRSVSMIMAKEYSKQLEKGNDEVGQNMLSFAINKIGNMNQ------------HFKY 450

Query: 385 MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPE 444
           ++ TG L T  GL +QQ AG  V AE++NF RF S FR +HRGA F  +R TS RKL   
Sbjct: 451 LIATGNLKTNDGLGMQQLAGIVVGAEKINFARFYSHFRCIHRGAFFMEMRATSPRKLSTA 510

Query: 445 SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
           +WGF+CPVHTPDG PCGLLNH+  T R+    ++   + +          +L+ +G+ P 
Sbjct: 511 AWGFICPVHTPDGPPCGLLNHLAHTVRINVKRENTAKLEE----------LLLEIGVKPC 560

Query: 505 LPKLVKSGPPAVLSVLLDGRVVGVIPSS-EIEKVVAHLRRLKVSAASVIPDDLEVGYVPL 563
             K  +   P    V++DG+ +G I +    + V  +LRRLK S++  +PD LE+ + P 
Sbjct: 561 SIKANEFDIP----VIIDGKQIGWIANGWRAQAVEKYLRRLKTSSSDRVPDTLEIVHCPA 616

Query: 564 --SLGGA--YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDG 619
             + G A  +PG+ L T P +  RP+ N+         IE+IG  EQV++ +        
Sbjct: 617 PENKGEAVMFPGINLLTEPARMYRPLLNL-----REVKIEMIGIMEQVWLHVTV-----N 666

Query: 620 GRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRAD 679
            + +     ++E++P  +LS +A ++P+S+ N   R + QCQMAKQT G+    L +R+D
Sbjct: 667 QKESHELTEYQELYPAALLSELACMSPFSNMNAGARVILQCQMAKQTFGWPSYTLNYRSD 726

Query: 680 QKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGM 739
            K+Y + TPQ P+VR++ +  +G+D+YP GTN ++AV++YTGYD+EDA  ++K S +RGM
Sbjct: 727 NKMYRILTPQEPLVRSHLHDSWGMDDYPLGTNVMIAVISYTGYDLEDATCVSKMSRERGM 786

Query: 740 CHGQIYQTETIDLSDDGNKVD--RGQKLFRRNK-DAKSLHSV-------IDSDGLPYVGQ 789
            +G IY+T+ +DL D    +    G +L  R++ D   L +        +D DGLP+ G 
Sbjct: 787 MYGTIYKTKMVDLQDTAQSMGYRSGLRLGCRDRFDPNELKAYRKIAGDKLDIDGLPFPGG 846

Query: 790 MIHPGEPYCSIYDK 803
           +    + Y   Y++
Sbjct: 847 IFTYQDAYYCYYNE 860


>gi|50292925|ref|XP_448895.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49528208|emb|CAG61865.1| unnamed protein product [Candida glabrata]
          Length = 1133

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 341/1192 (28%), Positives = 544/1192 (45%), Gaps = 174/1192 (14%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
            F  ++ LV+ H++SF+Y +D  L ++                                  
Sbjct: 39   FLKVKGLVKQHLDSFNYFVDVDLKKIIKANQLILSDVDPEFYLKYVDIRVGQRSGSPHKD 98

Query: 37   ------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADS 90
                   CR   ++Y+  +  D+E  Y    + ++ +    G+ P+ML++ +C L GAD 
Sbjct: 99   QLVPPHECRLRDMTYSAPIYVDIE--YTRGRNIIMHKNVEIGRMPIMLRSNKCILHGADE 156

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + +  L E   + GGYFI+NG E+V    IL ++    + +     ++++          
Sbjct: 157  KMMARLSECPLDPGGYFIVNGTEKV----ILVQEQLSKNRIIVEADEKKDIVQASVTSST 212

Query: 151  CVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYD 210
              RK ++ V  K     NG + L      +E  +P+ IVLKA    +DLEI   L C  D
Sbjct: 213  HERKSKTYVVTK-----NGKIYLKHNSIAEE--VPIVIVLKAAGIISDLEIM-QLVCGND 264

Query: 211  EKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV----IDGLQSES 266
              Y+            +   + L E   L++ T+ Q L++IG   + +    +  LQ E 
Sbjct: 265  SSYQ------------DIFSVNLEEAAKLNICTQQQALEYIGAKVKTMRRQKLTILQ-EG 311

Query: 267  YYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGH 326
              A+A T+I  ++ V   D  +K   +  M +++   + +  + D+ D + N+ + L G 
Sbjct: 312  IEAIATTIIA-HLTVEALDFREKALYIATMTRRVVMAMHNPKMVDDRDYVGNKRLELAGQ 370

Query: 327  LITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETML 386
            LI++  ++  + +    K  I   ++   +  ++  L +I        S  I + +   +
Sbjct: 371  LISLLFEDLFKKFNNDFKLSIDKVLKKPNRAMEYDALLSINV-----HSNNITSGLNRAI 425

Query: 387  KTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPES 445
             TG  + +      +RAG T    RL+++  +     +   + F   R  S  R L P  
Sbjct: 426  STGNWSLKRFK--MERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRKVSGPRALQPSQ 481

Query: 446  WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
            +G LC   TP+GE CGL+ ++     + +  D    IR         L  ++GV  I  L
Sbjct: 482  FGMLCTADTPEGEACGLVKNLALMTHITTD-DEEEPIRK--------LCYVLGVEPISLL 532

Query: 506  PKLVKSGPPAVLSVLLDGRVVGV--IPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL 563
                 +       V L+G ++G    PS+ + +     R  KVS            ++ +
Sbjct: 533  DS---ASLHLNYGVYLNGTLIGTTKFPSNFVSRFRFLRRTGKVSE-----------FISI 578

Query: 564  SLGGAYPGLYLFTSPPKFVRPVRNISLPSE--ESQNIELIGPFEQVF---MEIRCPDGGD 618
                 +  +++ T   +  RP+  +       E+++++ +   E VF   +++   +  D
Sbjct: 579  YTNDHHNAVHIATDGGRICRPLIIVKDGKSMVEAEHLKRLLSGELVFDDFLKLGLVEYLD 638

Query: 619  GGRRN-----------AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTM 667
                N               TH EI P  +L  VA L PY  HNQSPRN YQC M KQ +
Sbjct: 639  VNEENDSYIALYEKDITHDITHLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAI 698

Query: 668  GFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDA 727
            G        R D  LY +  PQ P+V+T T      D+ P G NA VAV++Y+GYD+EDA
Sbjct: 699  GAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDA 758

Query: 728  MILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSL--HSVIDSDGLP 785
            ++LNKSS+DRG    +  +  T  L    N         R +++ +++  H  +  DGL 
Sbjct: 759  LVLNKSSIDRGFGRCETRRKTTTVLKKYPNHTKDALCGMRVDENGEAIWQHESLGPDGLG 818

Query: 786  YVGQMIHPGEPYC--SIYDKTTNSWRTNSRKGSESVFVDYVA--------VDMKNSKNLP 835
             VG  I  G+ Y   S+  +++++   N  +  E+  + Y A        V M  S N  
Sbjct: 819  EVGLKIRSGQIYINKSVPVQSSDAMAVNQAQYRETPVI-YRAPELSIIDQVMMSTSDNDQ 877

Query: 836  QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSR 895
                +  R  R P +GDKFSSRHGQKGVC  +    DMPF+   G+ PD+I+NPH FPSR
Sbjct: 878  DLIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVQQEDMPFND-QGICPDIIMNPHGFPSR 936

Query: 896  MTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFN 955
            MT+  ++E ++ K G L+G     T F        G    D SK LVD+        GFN
Sbjct: 937  MTVGKMIELISGKAGVLNGSLEYGTCFG-------GSKLEDMSKILVDQ--------GFN 981

Query: 956  YHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRG 1015
            Y G ++LYSG+ G  L   IF GP+YYQ+L+HMV DK   R+ G    +TRQP +GR R 
Sbjct: 982  YSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRD 1041

Query: 1016 GGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREI 1075
            GG+R GEMERD ++A+GA+ LL +RL   SD    DVCS CG +  + +           
Sbjct: 1042 GGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCSNCGLMGYSGW----------- 1090

Query: 1076 GGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
                         C  C++++ +  + +PY  + L  EL AMNI   L+L D
Sbjct: 1091 -------------CSTCKSAEHIIKMTIPYAAKLLFQELLAMNIAPRLRLED 1129


>gi|68076215|ref|XP_680027.1| DNA-directed RNA polymerase, beta subunit [Plasmodium berghei strain
            ANKA]
 gi|56500894|emb|CAH97643.1| DNA-directed RNA polymerase, beta subunit, putative [Plasmodium
            berghei]
          Length = 1451

 Score =  418 bits (1074), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 230/542 (42%), Positives = 307/542 (56%), Gaps = 60/542 (11%)

Query: 631  EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQT 690
            E+  T  LS +A+LTP+SDHNQSPRN+YQCQM KQTMG     + +    K+Y + TPQ 
Sbjct: 913  ELKQTSFLSFLASLTPFSDHNQSPRNIYQCQMLKQTMGIQSLNMFYTFTNKIYRIITPQF 972

Query: 691  PIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETI 750
            P+V T  Y  YG+D +P+GTNA+VA+LAYTGYDMEDA+I+NK+S DRGM    IY+TE I
Sbjct: 973  PLVVTRDYEFYGVDNFPSGTNAVVAILAYTGYDMEDALIINKASSDRGMFRTHIYKTEVI 1032

Query: 751  DLSDDGNKVD---------RGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIY 801
            DL    N  D             L  +N   +     ++ DGLP + Q I    P  S  
Sbjct: 1033 DLYKKTNSPDFVLGNNIRYNANSLSSKNNIREHKGKFLNKDGLPCINQKILENNPLYSYI 1092

Query: 802  DKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQK 861
            +K          K     +VD V+    NS+N  Q A IR R TR P++GDKF+SRHGQK
Sbjct: 1093 NKKNELTTYEIFKTHGDYYVDCVS----NSQN-NQIAIIRLRTTRPPLVGDKFASRHGQK 1147

Query: 862  GVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATP 921
            GV S+L+P  DMPFS  +G+ PD+I NPH  PSRMTI ML+ES+  K  S++GK +DATP
Sbjct: 1148 GVISRLFPHEDMPFSE-SGIVPDVIFNPHGIPSRMTIGMLIESICGKAASIYGKRIDATP 1206

Query: 922  FANSVKKTN------------------------------GDTGTDESKSL-----VDELG 946
            F    K+ +                              G TG  ++  +     +D   
Sbjct: 1207 FRKYTKQKSFNNPWIDGCGVKGFLNKLDENADEKKTTIKGSTGNSDTTEISYDEKIDFFA 1266

Query: 947  EMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITR 1006
            ++L   G++Y+G E+LYSG+YG  L   IF G +YYQRLRHM  DK QVR TG +  +T 
Sbjct: 1267 KLLLNKGYDYYGTELLYSGIYGVPLQAHIFFGVIYYQRLRHMAYDKAQVRRTGPVCHLTH 1326

Query: 1007 QPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIH 1066
            QP+KG+K+ GGIR GEMERD L++HG ++++++R    SD H   VC  CG +L+    +
Sbjct: 1327 QPLKGKKKHGGIRLGEMERDGLISHGCSFIINERFLMNSDGHECFVCPKCGLILSPILQY 1386

Query: 1067 PQKRAI---REIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITL 1123
                 +   R IGG       K   C +C  S   + V +PYV RYL  EL  +NI I L
Sbjct: 1387 NCSGKLIKGRSIGG-----HSKMAVCKSCNVS--CKIVYVPYVLRYLLNELVCLNITIRL 1439

Query: 1124 QL 1125
             +
Sbjct: 1440 NV 1441



 Score =  119 bits (298), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 120/234 (51%), Gaps = 17/234 (7%)

Query: 381 SIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRK 440
           SI  + KTG +A+   +  QQ++G+ + A+ +N LR ++ FR++HRG+ F  ++  S RK
Sbjct: 549 SISYLFKTGNIASDY-IHYQQKSGWVILADEINNLRLLTNFRSIHRGSFFQDVKVLSPRK 607

Query: 441 LLPESWGFLCPVHTPDGEPCGLLNHMTSTC---RVASYYDSRGNIRDFSKMRTSILRVLI 497
           LL ESWGF+CPVHTPDG PCGLLNH++  C    VAS    + NI    KM    + + I
Sbjct: 608 LLGESWGFICPVHTPDGSPCGLLNHLSQYCCIYNVASNESHKFNI----KMYLKKIGINI 663

Query: 498 GVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLE 557
            +     +  + ++     + +++D   +  I  +E ++ V  L+  K      +    E
Sbjct: 664 NLDETSGIHTIYEN---QTIPIIVDSVPITYISETEFKRTVYKLKYAKNHNLYNLKSHFE 720

Query: 558 VGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEI 611
           +    L+       + + T   + +RP+ N+ +       IE I P  Q ++ I
Sbjct: 721 I-LAYLNEQSMMDSIIINTCTGRIIRPILNLKMKC-----IEFISPGYQPYVSI 768



 Score = 64.7 bits (156), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 79/347 (22%), Positives = 149/347 (42%), Gaps = 48/347 (13%)

Query: 38  CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
           C+ A  +Y G+++  +  QY    + +VR   + G  P+M+ +  C+L+  + ++LV   
Sbjct: 142 CKLACSTYEGEVLMVINKQY---KNEIVRTTVSTGFIPIMVLSDLCNLKNLNKKELVQKG 198

Query: 98  EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
           E+ + +GG+FI++G  ++ R VI PK N   S++ +          +  V I C+  D S
Sbjct: 199 EDESLLGGFFIISGHLKIIRYVICPKYN---SILLNE---------ENKVHINCLLSDNS 246

Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
                L YL N         QG    +P  +++  L                   Y K K
Sbjct: 247 VFINSLAYLKNYEYEFLSRFQGSFIHIPFNVLILCLSPIKKKSYI----------YNKIK 296

Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQ--------CLQHIGEH--FQPVIDGLQSESY 267
             + +      +K I   +  + L   +          L++IG++      I      + 
Sbjct: 297 LGIKN---ENAIKYIENYINSIFLKNNINEKEIFEKYNLKYIGKYANVSRTIFRYYEGNN 353

Query: 268 YAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKL----FSLVDHTSVSDNPDSLQNQEILL 323
           +   ++VI   +  HL  N++KF  +  M ++L    F L+  T+V  N DSL+   +  
Sbjct: 354 HKKGKSVINYCVLPHLQTNSEKFETICLMFKQLVLSKFKLI--TTV--NKDSLEYHSVTT 409

Query: 324 PGHLITIYLKEKLEDWLRKGKKLIQDEIENN-GKKFDFFNLANIKKV 369
              L++  LKE++     + + L    +     KK++ F L N+K++
Sbjct: 410 CSSLLSNILKERILSCFYRMQMLYSRSLHKFLEKKYEVFKL-NVKQI 455


>gi|158297007|ref|XP_317312.4| AGAP008151-PA [Anopheles gambiae str. PEST]
 gi|157014987|gb|EAA12689.4| AGAP008151-PA [Anopheles gambiae str. PEST]
          Length = 1089

 Score =  418 bits (1074), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 330/1119 (29%), Positives = 507/1119 (45%), Gaps = 157/1119 (14%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
             CR   ++Y+  +  D+E  Y      VVR     G+ P+ML++  C L G    +L  +
Sbjct: 95   ECRLRDMTYSAPITVDIE--YTRGTQRVVRNGLLIGRMPIMLRSSNCVLTGKSDYQLSKV 152

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
             E   + GGYFI+ G E+V   +++ +Q     M+   +            VI+C     
Sbjct: 153  NECPMDPGGYFIIRGTEKV---ILIQEQLSWNKMITEDYNG----------VIQCQVTSS 199

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
            +        LL    R           +PV I+LKA+   +D EI               
Sbjct: 200  THEKKSRTILLTKHGRYYLKHNSMTEEIPVAIILKAMGIASDQEIMQ------------- 246

Query: 217  KGAVG-SPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHF---QPVIDGLQSESYYAVAE 272
               VG  P   +R    L E  +  + T+ + L+++G      +      + ++    A 
Sbjct: 247  --LVGIDPETQKRFAPSLLEAANHKVFTQQRALEYMGSKLIAKRFTTAATKYKTTADEAR 304

Query: 273  TVIRDYIFVHLNDNNDKFNL----LIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
             ++   I  H+   +  F +    +  M++++ +     S  D+ D   N+ + L G L+
Sbjct: 305  DLLATTILAHVPVPSFNFQVKAIYVALMIRRVMAAELDRSAVDDRDYYGNKRLELAGSLL 364

Query: 329  TIYLKE--KLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETML 386
            ++  ++  K  +W     K+I D+     K   F    ++++ +       I   +ET +
Sbjct: 365  SLMFEDLFKRFNW---ELKMIADKNIPKIKAAQFDVGKHMREAL-------ITAGLETAI 414

Query: 387  KTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPES 445
             TG    +      +RAG T    RL+++  +     V+  + F   R  S  R L P  
Sbjct: 415  STGNWTIKRFK--MERAGVTQVLSRLSYISALGMMTRVN--SQFEKTRKVSGPRSLQPSQ 470

Query: 446  WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
            WG LCP  TP+GE CGL+ ++     + +  D    IR         +R+L G  +    
Sbjct: 471  WGMLCPSDTPEGEACGLVKNLALMTHITTEVDEEPVIRLAYNAGVEDIRLLGGETI---- 526

Query: 506  PKLVKSGPPAVLSVLLDGRVVGV-IPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS 564
                    P V  V ++G ++GV I    + +V   +RR  +  A          +V + 
Sbjct: 527  ------NNPKVFMVFINGNILGVTIAYRRLVEVFRMMRRRGLIGA----------FVSIH 570

Query: 565  LGGAYPGLYLFTSPPKFVRPV------RNISLPSEESQNIELIGPFEQVFMEIRCPDGGD 618
                   +Y+ T   +  RP       R + L   E +N   I   E             
Sbjct: 571  TSFTQRCVYIHTDGGRLCRPYIIVQAGRPLYLDVNE-ENDSFIAYQE------------- 616

Query: 619  GGRRNAFP--ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKF 676
               R+  P   TH EI P  +L V A L PY  HNQSPRN YQC M KQ MG      K 
Sbjct: 617  ---RDIDPEKTTHLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQCAMGKQAMGIIGYNQKN 673

Query: 677  RADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVD 736
            R D  +Y++  PQ+P+VR+ T      D+ P G NA VAV++Y+GYD+EDA+ILNK+S+D
Sbjct: 674  RIDTLMYNIVYPQSPMVRSRTIELTNFDKLPAGQNATVAVMSYSGYDIEDALILNKASID 733

Query: 737  RGMCHGQIYQTETIDLSDDGNKV-DRGQKLFRRNKDAKSL--HSVIDSDGLPYVGQMIHP 793
            RG     +Y+     +    N+  DR     +     K +  H  +D+DG+      + P
Sbjct: 734  RGYGRCLVYKNSKCTIKRYSNQTFDRIMGPMKDGVTGKIIAKHECLDTDGI------VSP 787

Query: 794  GEPYC---SIYDKTTNSWRTNS---RKGSESVFVDYVAVDMKNSKNLPQ-KANIRFRHTR 846
            GE      ++ +K   + ++N+   +K S    + Y A  + ++ N  +    I  R TR
Sbjct: 788  GERLTCKQTMVNKEMPAVKSNNPIEQKESGQQPIAYSARVLVSTNNEEEFLVKILLRQTR 847

Query: 847  NPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVA 906
             P IGDKFSSRHGQKGV   +    D+PF+   GM PD+++NPH FPSRMT+   LE + 
Sbjct: 848  RPEIGDKFSSRHGQKGVTGLIVEQEDLPFNDY-GMSPDMVMNPHGFPSRMTVGKTLELLG 906

Query: 907  AKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGV 966
            +K G L GKF   T F           G  +   L DEL       GFNY G +V YSG+
Sbjct: 907  SKAGVLEGKFHYGTAF-----------GGSKCSDLQDELFNH----GFNYLGKDVFYSGI 951

Query: 967  YGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERD 1026
             G  L   I+ GPVYYQ+L+HMV DK   R+ G    +TRQP +GR R GG+R GEMERD
Sbjct: 952  TGEPLEVYIYSGPVYYQKLKHMVQDKMHARARGPRAVLTRQPTQGRSREGGLRLGEMERD 1011

Query: 1027 SLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKK 1086
             L+++GA+ L+ +RL   SD    DVC++CG +  +++                      
Sbjct: 1012 CLISYGASMLIMERLMISSDAFDVDVCNVCGRLAYSSW---------------------- 1049

Query: 1087 VTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
              CH C++S  + T++MPY  + L  EL +MNI   L+L
Sbjct: 1050 --CHNCRSSASVSTISMPYACKLLFQELTSMNIVPRLKL 1086


>gi|82594366|ref|XP_725394.1| DNA-directed RNA polymerase subunit beta [Plasmodium yoelii yoelii
            17XNL]
 gi|23480386|gb|EAA16959.1| DNA-directed RNA polymerase, beta subunit [Plasmodium yoelii yoelii]
          Length = 1470

 Score =  417 bits (1073), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 230/542 (42%), Positives = 305/542 (56%), Gaps = 59/542 (10%)

Query: 631  EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQT 690
            E+  T  LS +A+LTP+SDHNQSPRN+YQCQM KQTMG     + +    K+Y + TPQ 
Sbjct: 931  ELKQTSFLSFLASLTPFSDHNQSPRNIYQCQMLKQTMGIQSLNMFYTFTNKIYRIITPQF 990

Query: 691  PIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETI 750
            P+V T  Y  YG+D +P+GTNA+VA+LAYTGYDMEDA+I+NK+S DRGM    IY+TE I
Sbjct: 991  PLVVTRDYEFYGVDNFPSGTNAVVAILAYTGYDMEDALIINKASSDRGMFRTHIYKTEVI 1050

Query: 751  DLSDDGNKVDRG---------QKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIY 801
            DL    N  D             L  +N   +     ++ DGLP + Q I    P  S  
Sbjct: 1051 DLYKKTNSPDFALGNNVRYTINSLPTKNNPREYKGRFLNKDGLPCINQKILENNPLYSYI 1110

Query: 802  DKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQK 861
            +K          K     +VD V+    NS++  Q A IR R TR P++GDKF+SRHGQK
Sbjct: 1111 NKKNELTTYEVFKTHGDYYVDCVS----NSQSNNQVAIIRLRTTRPPLVGDKFASRHGQK 1166

Query: 862  GVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATP 921
            GV S+L+P  DMPFS  +G+ PD+I NPH  PSRMTI ML+ES+  K  S++GK +DATP
Sbjct: 1167 GVVSRLFPHEDMPFSE-SGIVPDVIFNPHGIPSRMTIGMLIESICGKAASIYGKRIDATP 1225

Query: 922  FANSVKK-----------------TNGDTGTDESKSL------------------VDELG 946
            F    K+                    D   DE K+                   +D   
Sbjct: 1226 FRKYTKQKSFNNPWIDGCGAKGFLNKQDENADEKKTTIKSSTENSDTTEISYDEKIDFFA 1285

Query: 947  EMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITR 1006
            ++L   G++Y+G E+LYSG+YG  L   IF G +YYQRLRHM  DK QVR TG +  +T 
Sbjct: 1286 KLLLNKGYDYYGTELLYSGIYGVPLQAHIFFGVIYYQRLRHMAYDKAQVRRTGPVCHLTH 1345

Query: 1007 QPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIH 1066
            QP+KG+K+ GGIR GEMERD L++HG ++++++R    SD H   VC  CG +L+    +
Sbjct: 1346 QPLKGKKKHGGIRLGEMERDGLISHGCSFIINERFLMNSDGHECFVCPKCGLILSPILQY 1405

Query: 1067 PQKRAI---REIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITL 1123
                 +   R IGG       K   C +C  S   + V +PYV RYL  EL  +NI I L
Sbjct: 1406 NCSGKLMKGRSIGG-----NSKMAVCKSCNVS--CKIVYVPYVLRYLLNELVCLNITIRL 1458

Query: 1124 QL 1125
             +
Sbjct: 1459 NI 1460



 Score =  116 bits (290), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 122/239 (51%), Gaps = 27/239 (11%)

Query: 381 SIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRK 440
           +I  + KTG +++   +  QQ++G+ + A+ +N LR ++ FRA+HRG+ F  ++  S RK
Sbjct: 572 AISYLFKTGNISSDY-IHYQQKSGWVILADEINNLRLLTNFRAIHRGSFFQDVKVLSPRK 630

Query: 441 LLPESWGFLCPVHTPDGEPCGLLNHMTSTC---RVASYYDSRGNIRDFSKMRTSILRVLI 497
           LL ESWGF+CPVHTPDG PCGLLNH++  C    VAS    + NI+ + K      ++ I
Sbjct: 631 LLGESWGFICPVHTPDGSPCGLLNHLSQYCCIHNVASNEPHKFNIKMYLK------KIGI 684

Query: 498 GVGMIPSLPKLVKSGPPAV-----LSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVI 552
            V +  +      SG   V     + +++D   +  I  ++ ++ V  L+  K      +
Sbjct: 685 NVNLDET------SGIHTVYENQTIPIIVDSVPITYISENDFKRTVYKLKYAKNHNLYNL 738

Query: 553 PDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEI 611
               E+    L+       + + T   + +RP+ N+ +       IE I P  Q ++ I
Sbjct: 739 KSHFEI-IAHLNEQSLMDSITIHTCTGRIIRPILNLKMKC-----IEFISPGYQPYVSI 791



 Score = 59.3 bits (142), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 127/312 (40%), Gaps = 44/312 (14%)

Query: 38  CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
           C+ A  +Y G+++  +  QY    + +VR   + G  P+M+ +  C+L+  + ++LV   
Sbjct: 166 CKLACSTYEGEVLVVINKQY---KNEIVRTTVSTGFIPIMVLSDLCNLKNLNKKELVQKG 222

Query: 98  EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
           E+ + +GG+FI++G  ++ R VI PK N  +               +  V I C+  D S
Sbjct: 223 EDESILGGFFIVSGHLKIIRYVICPKYNAILLN------------EENKVHINCLLSDNS 270

Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKAL---------VDTNDLEIFNHLTCC 208
                L YL N         QG    +   +++  L          +   L I N     
Sbjct: 271 VFINSLSYLNNYEYEYLSRFQGSFIRIAFNVLILCLSPIKKKSYIYNKIKLGIKNENAIK 330

Query: 209 YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYY 268
           Y E Y      + S  +   +     EV D      L    +         DG    + Y
Sbjct: 331 YIENY------INSIFLKNDIN--EKEVFDKYNLKYLGKYANTSRTIFRYYDG----NNY 378

Query: 269 AVAETVIRDYIFVHLNDNNDKFNLLIFMLQKL----FSLVDHTSVSDNPDSLQNQEILLP 324
              + V++  +  HL  N++KF  +  M ++L    F L++    + N DSL+   +   
Sbjct: 379 KKGKNVVKYCVLPHLQSNSEKFETICLMFKQLVLSKFKLIN----TVNKDSLEYHSVTTC 434

Query: 325 GHLITIYLKEKL 336
             L++  LKE++
Sbjct: 435 SGLLSNILKERI 446


>gi|6324781|ref|NP_014850.1| Ret1p [Saccharomyces cerevisiae S288c]
 gi|2507350|sp|P22276.2|RPC2_YEAST RecName: Full=DNA-directed RNA polymerase III subunit RPC2; Short=RNA
            polymerase III subunit C2; AltName: Full=C128; AltName:
            Full=DNA-directed RNA polymerase III 130 kDa polypeptide
 gi|1420485|emb|CAA99422.1| RPC128 [Saccharomyces cerevisiae]
 gi|151945297|gb|EDN63540.1| RNA polymerase C [Saccharomyces cerevisiae YJM789]
 gi|256269629|gb|EEU04911.1| Ret1p [Saccharomyces cerevisiae JAY291]
 gi|259149688|emb|CAY86492.1| Ret1p [Saccharomyces cerevisiae EC1118]
 gi|285815086|tpg|DAA10979.1| TPA: Ret1p [Saccharomyces cerevisiae S288c]
 gi|392296534|gb|EIW07636.1| Ret1p [Saccharomyces cerevisiae CEN.PK113-7D]
          Length = 1149

 Score =  417 bits (1072), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 346/1200 (28%), Positives = 539/1200 (44%), Gaps = 186/1200 (15%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
            F  ++ LV+ H++SF+Y +D  L ++                                  
Sbjct: 51   FLKVKGLVKQHLDSFNYFVDTDLKKIIKANQLILSDVDPEFYLKYVDIRVGKKSSSSTKD 110

Query: 37   ------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADS 90
                   CR   ++Y+  +  D+E  Y    + ++ +    G+ P+ML++ +C L  AD 
Sbjct: 111  YLTPPHECRLRDMTYSAPIYVDIE--YTRGRNIIMHKDVEIGRMPIMLRSNKCILYDADE 168

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
             K+  L E   + GGYFI+NG E+V   +++ +Q     ++  +  D ++G    +V   
Sbjct: 169  SKMAKLNECPLDPGGYFIVNGTEKV---ILVQEQLSKNRIIVEA--DEKKGIVQASVTSS 223

Query: 151  C-VRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
               RK ++ V  K     NG + L      +E  +P+ IVLKA    +DLEI   L C  
Sbjct: 224  THERKSKTYVITK-----NGKIYLKHNSIAEE--IPIAIVLKACGILSDLEIM-QLVCGN 275

Query: 210  DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV----IDGLQSE 265
            D  Y+            +   + L E   L + T+ Q L++IG   + +    +  LQ E
Sbjct: 276  DSSYQ------------DIFAVNLEESSKLDIYTQQQALEYIGAKVKTMRRQKLTILQ-E 322

Query: 266  SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPG 325
               A+A TVI  ++ V   D  +K   +  M +++   + +  + D+ D + N+ + L G
Sbjct: 323  GIEAIATTVIA-HLTVEALDFREKALYIAMMTRRVVMAMYNPKMIDDRDYVGNKRLELAG 381

Query: 326  HLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
             LI++  ++  + +    K  I   ++   +  ++  L +I        S  I + +   
Sbjct: 382  QLISLLFEDLFKKFNNDFKLSIDKVLKKPNRAMEYDALLSINV-----HSNNITSGLNRA 436

Query: 386  LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPE 444
            + TG  + +      +RAG T    RL+++  +     +   + F   R  S  R L P 
Sbjct: 437  ISTGNWSLKRFK--MERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRKVSGPRALQPS 492

Query: 445  SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
             +G LC   TP+GE CGL+ ++     + +         D  +     L  ++GV  I  
Sbjct: 493  QFGMLCTADTPEGEACGLVKNLALMTHITT---------DDEEEPIKKLCYVLGVEDI-- 541

Query: 505  LPKLVKSGPPAV-LSVLLDGRVVGVI--PSSEIEKVVAHLRRL-KVSAASVIPDDLEVGY 560
               L+ S    +   V L+G ++G I  P+  + +   HLRR  KVS            +
Sbjct: 542  --TLIDSASLHLNYGVYLNGTLIGSIRFPTKFVTQF-RHLRRTGKVSE-----------F 587

Query: 561  VPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFE-----QVFMEIRCPD 615
            + +        +++ T   +  RP+  +S      ++I L    +       F+++   +
Sbjct: 588  ISIYSNSHQMAVHIATDGGRICRPLIIVSDGQSRVKDIHLRKLLDGELDFDDFLKLGLVE 647

Query: 616  GGDGGRRN----------AFPA-THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAK 664
              D    N            P+ TH EI P  +L  VA L PY  HNQSPRN YQC M K
Sbjct: 648  YLDVNEENDSYIALYEKDIVPSMTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGK 707

Query: 665  QTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDM 724
            Q +G        R D  LY +  PQ P+V+T T      D+ P G NA VAV++Y+GYD+
Sbjct: 708  QAIGAIAYNQFKRIDTLLYLMTYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDI 767

Query: 725  EDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDR--GQKLFRRNKDAKSLHSVIDSD 782
            EDA++LNKSS+DRG    +  +  T  L    N      G      N D    H  +  D
Sbjct: 768  EDALVLNKSSIDRGFGRCETRRKTTTVLKRYANHTQDIIGGMRVDENGDPIWQHQSLGPD 827

Query: 783  GLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR---------------KGSESVFVDYVAVD 827
            GL  VG  +  G+ Y +    T ++   N                 +G E   +D V   
Sbjct: 828  GLGEVGMKVQSGQIYINKSVPTNSADAPNPNNVNVQTQYREAPVIYRGPEPSHIDQVM-- 885

Query: 828  MKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLII 887
            M  S N      +  R  R P +GDKFSSRHGQKGVC  +    DMPF+   G+ PD+I+
Sbjct: 886  MSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVKQEDMPFND-QGIVPDIIM 944

Query: 888  NPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGE 947
            NPH FPSRMT+  ++E ++ K G L+G     T F        G    D SK LVD+   
Sbjct: 945  NPHGFPSRMTVGKMIELISGKAGVLNGTLEYGTCFG-------GSKLEDMSKILVDQ--- 994

Query: 948  MLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQ 1007
                 GFNY G ++LYSG+ G  L   IF GP+YYQ+L+HMV DK   R+ G    +TRQ
Sbjct: 995  -----GFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQ 1049

Query: 1008 PIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHP 1067
            P +GR R GG+R GEMERD ++A+GA+ LL +RL   SD    DVC  CG +  + +   
Sbjct: 1050 PTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCDKCGLMGYSGW--- 1106

Query: 1068 QKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
                                 C  C++++ +  + +PY  + L  EL +MNI   L+L D
Sbjct: 1107 ---------------------CTTCKSAENIIKMTIPYAAKLLFQELLSMNIAPRLRLED 1145


>gi|356495051|ref|XP_003516394.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Glycine
            max]
          Length = 1166

 Score =  417 bits (1072), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 335/1207 (27%), Positives = 536/1207 (44%), Gaps = 179/1207 (14%)

Query: 8    DFEPLRELVRHHIESFDYM---------------------------LDEGL---SEMFDH 37
            +F  +R LV+ H++SF+Y                            L+ G+   S M D 
Sbjct: 53   EFLKVRGLVKQHLDSFNYFVRTDIKKIVRANNLIMASRYPHIYLRFLNVGIGKPSMMIDE 112

Query: 38   ---------CRQAKISYTGKLMADVEFQYLDAGSPVVRE--RFNFGQFPVMLKTRRCHLQ 86
                     CR + ++Y   + ADVE+       P  +   R   G+ P+ML++  C L 
Sbjct: 113  VTEGLTPQTCRLSDLTYAAPICADVEYTLRSHDKPDNKRTLRVEIGRMPIMLRSCCCVLH 172

Query: 87   GADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKA 146
            G D  +L  L E   + GGYF++ G E+V   +++ +Q   +S  R      ++G    +
Sbjct: 173  GKDEAELAKLGECPLDPGGYFVIKGTEKV---ILIQEQ---LSKNRIIIDTDKKGNITAS 226

Query: 147  VVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEY--LLPVGIVLKALVDTNDLEIFNH 204
            V           +  K   ++        WLQ  ++   +P+ +V+KA+   +D E+   
Sbjct: 227  VT-----SSTEKIKTKTVIVMENE---KLWLQLNKFPKKVPLMVVMKAMGMESDQEVIQ- 277

Query: 205  LTCCYDEKYKKEKGAVG-SPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQ 263
                           VG  P  S  +   + E +   + T+ Q L+++ +  +       
Sbjct: 278  --------------MVGRDPRYSFLLLPSIEECRKCKVYTKEQALEYLDKLVKRPTYSSN 323

Query: 264  SESYYAVAETVIRDYIFVHLNDNNDKFN----LLIFMLQKLFSLVDHTSVSDNPDSLQNQ 319
            S      A + +RD    ++  + D F      +  M++++   + +    D+ D + N+
Sbjct: 324  SAEKEGAAFSALRDVFLANVPVDQDNFQKKCIYVAVMMRRIMDAILNKDAMDDKDYVGNK 383

Query: 320  EILLPGHLITIYLKEKLEDWLRKGKKLIQDEIE--NNGKKFDFFNLANIKKVMEKNPSKQ 377
             + L G LI++  ++  +    + K L    ++  +  K FD   L    + +       
Sbjct: 384  RLELSGQLISLLFEDLFKSMTTEVKNLTDKMLDKPDKAKNFDICTLLTRTRSI------- 436

Query: 378  IGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS 437
            I   +E  L TG    +      +R G T   +RL+F+  +     V     F   R  S
Sbjct: 437  ITLGLERTLSTGNFEIKRFR--MERKGMTQVLQRLSFIGALGHMTRV--SPQFEKSRKVS 492

Query: 438  -VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R L P  WG LCP  TP+GE CGL+ ++     V +  + +  I  F  +  + +  L
Sbjct: 493  GPRALQPSQWGMLCPCDTPEGESCGLVKNLALMTHVTTDEEEKPLISLFYSLDVARIEHL 552

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDL 556
                +            P    V+ +G ++G             +R+L+ +         
Sbjct: 553  FAEEL----------HTPDSFLVIFNGLILG--KHRRPLHFATRIRKLRRAG-------- 592

Query: 557  EVG-YVPLSLGGAYPGLYLFTSPPKFVRPV----RNISLPSEE--SQNIELIGPFEQVFM 609
            E+G +V + +      +YL +   +  RP+    + IS   +    + ++ +  F+    
Sbjct: 593  EIGEFVSVYVNEKQHCVYLASDGGRVCRPLVIADKGISRIKQHHMKELMDGVCTFDDFLR 652

Query: 610  EIRCPDGGDGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQ 659
            +            NA  A          TH EI P  +L V+A L PY  HNQSPRN YQ
Sbjct: 653  DGLLEYLDVNEENNALIALYEGDATSETTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQ 712

Query: 660  CQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAY 719
            C M KQ MG        R D  LY L  PQ P++ T T    G D+   G NA VAV++Y
Sbjct: 713  CAMGKQAMGNIAFNQLRRMDSLLYLLVYPQRPLLTTKTIELVGYDKLGAGQNATVAVMSY 772

Query: 720  TGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNK--DAKSLHS 777
            +GYD+EDA+++NK+S+DRG     + +     +    N  D   ++ R N+  D      
Sbjct: 773  SGYDIEDAIVMNKASLDRGFGRCIVMKKYNAIIQKHSN--DTSDRILRPNRTADTAGRMQ 830

Query: 778  VIDSDGLPYVGQMIHPGEPYC--------------SIYDKTTNSWRTNSR--KGSESVFV 821
            ++D DG+   G+++ P + Y               S  +   +++R+N++  KG+    V
Sbjct: 831  ILDDDGIAAPGEILRPYDIYINKQSPIDTRTPKTGSAANLPDSAYRSNAQSFKGNGGEVV 890

Query: 822  DYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGM 881
            D V +      N+  K  IR  HTR P +GDKFSSRHGQKGVC  + P  D PFS   G+
Sbjct: 891  DRVVLCSDKDNNMCIKFLIR--HTRRPELGDKFSSRHGQKGVCGTIVPQEDFPFSE-KGI 947

Query: 882  RPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSL 941
             PDLI+NPH FPSRMT+  ++E +  K G   G+F   + F        G+      K  
Sbjct: 948  CPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAF--------GERSGHADK-- 997

Query: 942  VDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTM 1001
            V+ + E L + GFNY G + +YSG+ G  L   IF+GP+YYQ+L+HMV DK   R +G  
Sbjct: 998  VETISETLVSKGFNYSGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPR 1057

Query: 1002 DQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLT 1061
              +TRQP +GR R GG+R GEMERD L+A+GA+ L+++RL   SD     VC+ CG  L 
Sbjct: 1058 VMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIYERLMLSSDPFEVQVCTACG--LL 1115

Query: 1062 ATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKI 1121
              + H  K  I                C +C+    + T+ +PY  + +  EL +MNI  
Sbjct: 1116 GYYNHKLKTGI----------------CSSCKNGDNISTMKLPYACKLMIQELQSMNIVP 1159

Query: 1122 TLQLGDG 1128
             L+L D 
Sbjct: 1160 RLKLADA 1166


>gi|365762885|gb|EHN04417.1| Ret1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
          Length = 1149

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 345/1200 (28%), Positives = 539/1200 (44%), Gaps = 186/1200 (15%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
            F  ++ LV+ H++SF+Y +D  L ++                                  
Sbjct: 51   FLKVKGLVKQHLDSFNYFVDTDLKKIIKANQLILSDVDPEFYLKYVDIRVGKKSSSSTKD 110

Query: 37   ------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADS 90
                   CR   ++Y+  +  D+E  Y    + ++ +    G+ P+ML++ +C L  AD 
Sbjct: 111  YLTPPHECRLRDMTYSAPIYVDIE--YTRGRNIIMHKDVEIGRMPIMLRSNKCILYDADE 168

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
             K+  L E   + GGYFI+NG E+V   +++ +Q     ++  +  D ++G    +V   
Sbjct: 169  SKMAKLNECPLDPGGYFIVNGTEKV---ILVQEQLSKNRIIVEA--DEKKGIVQASVTSS 223

Query: 151  C-VRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
               RK ++ V  K     NG + L      +E  +P+ IVLKA    +DLEI   L C  
Sbjct: 224  THERKSKTYVITK-----NGKIYLKHNSIAEE--IPIAIVLKACGILSDLEIM-QLVCGN 275

Query: 210  DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV----IDGLQSE 265
            D  Y+            +   + L E   L + T+ Q L++IG   + +    +  LQ E
Sbjct: 276  DSSYQ------------DIFAVNLEESSKLDIYTQQQALEYIGAKVKTMRRQKLTILQ-E 322

Query: 266  SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPG 325
               A+A TVI  ++ V   D  +K   +  M +++   + +  + D+ D + N+ + L G
Sbjct: 323  GIEAIATTVIA-HLTVEALDFREKALYIAMMTRRVVMAMYNPKMIDDRDYVGNKRLELAG 381

Query: 326  HLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
             LI++  ++  + +    K  I   ++   +  ++  L +I        S  I + +   
Sbjct: 382  QLISLLFEDLFKKFNNDFKLSIDKVLKKPNRAMEYDALLSINV-----HSNNITSGLNRA 436

Query: 386  LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPE 444
            + TG  + +      +RAG T    RL+++  +     +   + F   R  S  R L P 
Sbjct: 437  ISTGNWSLKRFK--MERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRKVSGPRALQPS 492

Query: 445  SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
             +G LC   TP+GE CGJ+ ++     + +         D  +     L  ++GV  I  
Sbjct: 493  QFGMLCTADTPEGEACGJVKNLALMTHITT---------DDEEEPIKKLCYVLGVEDI-- 541

Query: 505  LPKLVKSGPPAV-LSVLLDGRVVGVI--PSSEIEKVVAHLRRL-KVSAASVIPDDLEVGY 560
               L+ S    +   V L+G ++G I  P+  + +   HLRR  KVS            +
Sbjct: 542  --TLIDSASLHLNYGVYLNGTLIGSIRFPTKFVTQF-RHLRRTGKVSE-----------F 587

Query: 561  VPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFE-----QVFMEIRCPD 615
            + +        +++ T   +  RP+  +S      ++I L    +       F+++   +
Sbjct: 588  ISIYSNSHQMAVHIATDGGRICRPLIIVSDGQSRVKDIHLRKLLDGELDFDDFLKLGLVE 647

Query: 616  GGDGGRRN----------AFPA-THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAK 664
              D    N            P+ TH EI P  +L  VA L PY  HNQSPRN YQC M K
Sbjct: 648  YLDVNEENDSYIALYEKDIVPSMTHLEIEPFTILGXVAGLIPYPHHNQSPRNTYQCAMGK 707

Query: 665  QTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDM 724
            Q +G        R D  LY +  PQ P+V+T T      D+ P G NA VAV++Y+GYD+
Sbjct: 708  QAIGAIAYNQFKRIDTLLYLMTYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDI 767

Query: 725  EDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDR--GQKLFRRNKDAKSLHSVIDSD 782
            EDA++LNKSS+DRG    +  +  T  L    N      G      N D    H  +  D
Sbjct: 768  EDALVLNKSSIDRGFGRCETRRKTTTVLKRYANHTQDIIGGMRVDENGDPIWQHQSLGPD 827

Query: 783  GLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR---------------KGSESVFVDYVAVD 827
            GL  VG  +  G+ Y +    T ++   N                 +G E   +D V   
Sbjct: 828  GLGEVGMKVQSGQIYINKSVPTNSADAPNPNNVNVQTQYREAPVIYRGPEPSHIDQVM-- 885

Query: 828  MKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLII 887
            M  S N      +  R  R P +GDKFSSRHGQKGVC  +    DMPF+   G+ PD+I+
Sbjct: 886  MSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVKQEDMPFND-QGIVPDIIM 944

Query: 888  NPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGE 947
            NPH FPSRMT+  ++E ++ K G L+G     T F        G    D SK LVD+   
Sbjct: 945  NPHGFPSRMTVGKMIELISGKAGVLNGTLEYGTCFG-------GSKLEDMSKILVDQ--- 994

Query: 948  MLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQ 1007
                 GFNY G ++LYSG+ G  L   IF GP+YYQ+L+HMV DK   R+ G    +TRQ
Sbjct: 995  -----GFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQ 1049

Query: 1008 PIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHP 1067
            P +GR R GG+R GEMERD ++A+GA+ LL +RL   SD    DVC  CG +  + +   
Sbjct: 1050 PTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCDKCGLMGYSGW--- 1106

Query: 1068 QKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
                                 C  C++++ +  + +PY  + L  EL +MNI   L+L D
Sbjct: 1107 ---------------------CTTCKSAENIIKMTIPYAAKLLFQELLSMNIAPRLRLED 1145


>gi|401623550|gb|EJS41646.1| ret1p [Saccharomyces arboricola H-6]
          Length = 1149

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 342/1199 (28%), Positives = 542/1199 (45%), Gaps = 184/1199 (15%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
            F  ++ LV+ H++SF+Y +D  L ++                                  
Sbjct: 51   FLKVKGLVKQHLDSFNYFVDTDLKKIIKANQLILSDVDPEFYLKYVDIRVGKKSSSSTKD 110

Query: 37   ------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADS 90
                   CR   ++Y+  +  D+E  Y    + ++ +    G+ P+ML++ +C L  AD 
Sbjct: 111  YLTPPHECRLRDMTYSAPIYVDIE--YTRGRNIIMHKDVEIGRMPIMLRSNKCILYDADE 168

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
             K+  L E   + GGYFI+NG E+V   +++ +Q     ++  +  D ++G    +V   
Sbjct: 169  SKMAKLNECPLDPGGYFIVNGTEKV---ILVQEQLSKNRIIVEA--DEKKGIVQASVTSS 223

Query: 151  C-VRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
               RK ++ V  K     NG + L      +E  +P+ +VLKA    +DLEI   L C  
Sbjct: 224  THERKSKTYVITK-----NGKIYLKHNSIAEE--IPIAVVLKAGGIVSDLEIM-QLVCGN 275

Query: 210  DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV----IDGLQSE 265
            D  Y+            +   + L E   L + T+ Q L++IG   + +    +  LQ E
Sbjct: 276  DSSYQ------------DIFAVNLEESSKLDIYTQQQALEYIGAKVKTMRRQKLSILQ-E 322

Query: 266  SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPG 325
               A+A TVI  ++ V   D  +K   +  M +++   + +  + D+ D + N+ + L G
Sbjct: 323  GIEAIATTVIA-HLTVEALDFREKALYIAMMTRRVVMAMYNPKMIDDRDYVGNKRLELAG 381

Query: 326  HLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
             LI++  ++  + +    K  I   ++   +  ++  L +I        S  I + +   
Sbjct: 382  QLISLLFEDLFKKFNNDFKLSIDKVLKKPNRAMEYDALLSINV-----HSNNITSGLNRA 436

Query: 386  LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPE 444
            + TG  + +      +RAG T    RL+++  +     +   + F   R  S  R L P 
Sbjct: 437  ISTGNWSLKRFK--MERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRKVSGPRALQPS 492

Query: 445  SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
             +G LC   TP+GE CGL+ ++     + +         D  +     L  ++GV  I  
Sbjct: 493  QFGMLCTADTPEGEACGLVKNLALMTHITT---------DDEEEPIKKLCYVLGVEDIT- 542

Query: 505  LPKLVKSGPPAV-LSVLLDGRVVGVI--PSSEIEKVVAHLRRLKVSAASVIPDDLEVGYV 561
               L+ S    +   V L+G +VG I  P+    K V   RRL+ +            ++
Sbjct: 543  ---LIDSASLHLNYGVYLNGTLVGSIRFPT----KFVTQFRRLRRTGKVS-------EFI 588

Query: 562  PLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFE-----QVFMEIRCPDG 616
             +        +++ T   +  RP+  +S      ++  L    E       F+++   + 
Sbjct: 589  SIYSNSHQMAVHIATDGGRICRPLIIVSGGQSRVKDTHLRQLLEGKLDFDDFLKLGLVEY 648

Query: 617  GDGGRRN----------AFPA-THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQ 665
             D    N            P+ TH EI P  +L  VA L PY  HNQSPRN YQC M KQ
Sbjct: 649  LDVNEENDSYIALYEKDIIPSMTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQ 708

Query: 666  TMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDME 725
             +G        R D  LY +  PQ P+V+T T      D+ P G NA VAV++Y+GYD+E
Sbjct: 709  AIGAIAYNQFKRIDTLLYLMTYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIE 768

Query: 726  DAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSL--HSVIDSDG 783
            DA++LNKSS+DRG    +  +  T  L    N         R +++ + +  H  +  DG
Sbjct: 769  DALVLNKSSIDRGFGRCETRRKTTTVLKRYANHTQDIIGGMRVDENGEPIWQHQSLGPDG 828

Query: 784  LPYVGQMIHPGEPYC--SIYDKTTNSWRTNS-------------RKGSESVFVDYVAVDM 828
            L  VG  +  G+ Y   S+   +T++   N+              +G E   +D V   M
Sbjct: 829  LGEVGMKVKSGQIYINKSVPTNSTDAPNPNNVNVQTQYREAPVIYRGPEPSHIDQVM--M 886

Query: 829  KNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIIN 888
              S N      +  R  R P +GDKFSSRHGQKGVC  +    DMPF+   G+ PD+I+N
Sbjct: 887  SVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVKQEDMPFND-QGIVPDIIMN 945

Query: 889  PHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEM 948
            PH FPSRMT+  ++E ++ K G ++G     T F        G    D SK LVD+    
Sbjct: 946  PHGFPSRMTVGKMIELISGKAGVMNGTLEYGTCFG-------GSKLEDMSKILVDQ---- 994

Query: 949  LRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQP 1008
                GFNY G ++LYSG+ G  L   IF GP+YYQ+L+HMV DK   R+ G    +TRQP
Sbjct: 995  ----GFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQP 1050

Query: 1009 IKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQ 1068
             +GR R GG+R GEMERD ++A+GA+ LL +RL   SD    DVC  CG +  + +    
Sbjct: 1051 TEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCDKCGLMGYSGW---- 1106

Query: 1069 KRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
                                C  C++++ +  + +PY  + L  EL +MNI   L+L D
Sbjct: 1107 --------------------CTTCKSAENIIKMTIPYAAKLLFQELLSMNIAPRLRLED 1145


>gi|403182564|gb|EJY57481.1| AAEL017156-PA [Aedes aegypti]
          Length = 1134

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 339/1160 (29%), Positives = 527/1160 (45%), Gaps = 195/1160 (16%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
             CR   ++Y   +  D+E  Y      VVR     G+ P+ML++  C L G    +L  +
Sbjct: 100  ECRLRDMTYAAPITVDIE--YTRGTQRVVRNNLLIGRMPIMLRSSNCVLTGKSEYELSQV 157

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC----V 152
             E   + GGYF++ G E+V   +++ +Q     M+   + +          VI+C     
Sbjct: 158  NECPMDPGGYFVIRGTEKV---ILIQEQVSWNKMITEDYNN----------VIQCQVTSS 204

Query: 153  RKDQSSVTLKL-----YYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTC 207
              ++ S T+ L     YYL + S+            +PV I+ KA+   +D EI   +  
Sbjct: 205  THEKKSRTILLSKHGKYYLKHNSM---------TEEIPVAIIFKAMGIASDQEIMQLVGI 255

Query: 208  CYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHF---QPVIDGLQS 264
              D + +K            R    L E  +  + T+ + L+++G      +      + 
Sbjct: 256  --DTETQK------------RFAPSLLEATNHKVYTQQRALEYMGSKLIAKRFTTAATKY 301

Query: 265  ESYYAVAETVIRDYIFVHLNDNNDKFNL----LIFMLQKLFSLVDHTSVSDNPDSLQNQE 320
            ++    A  ++   I  H+   N  F +    +  M++++ +     S  D+ D   N+ 
Sbjct: 302  KTTADEARDLLATTILAHVPVPNFNFQVKAIYVALMIRRVMAAEVDKSAVDDRDYYGNKR 361

Query: 321  ILLPGHLITIYLKE--KLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKK----VMEKNP 374
            + L G L+++  ++  K  +W     K+I D+           N+  IK     V++   
Sbjct: 362  LELAGSLLSLMFEDLFKRFNW---ELKMIADK-----------NIPKIKAAQFDVVKHMR 407

Query: 375  SKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLR 434
            +  I T +ET + TG    +      +RAG T    RL+++  +     V+  + F   R
Sbjct: 408  AALISTGLETAISTGNWTIKRFK--MERAGVTQVLSRLSYISALGMMTRVN--SQFEKTR 463

Query: 435  TTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
              S  R L P  WG LCP  TP+GE CGL+ ++     + +  D    IR         +
Sbjct: 464  KVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVDEEPVIRLAYNSGVEDI 523

Query: 494  RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV-IPSSEIEKVVAHLRRLKVSAASVI 552
            R+L G  +            P V  V ++G ++GV I    + +V   +RR  +  +   
Sbjct: 524  RLLGGETI----------NNPKVFMVFINGNILGVTIGYKRLVEVFRMMRRKGLIGS--- 570

Query: 553  PDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP---VRNISLPSEESQNIELIG----PFE 605
                   +V +        +Y+ T   +  RP   V+N   P  + ++IE +      F+
Sbjct: 571  -------FVSIHTSFTQRCVYIHTDGGRLCRPYIIVQN-GRPLVQQEHIEQLKIGLRKFD 622

Query: 606  QVFMEIRCPDGGDGGRRN-AFPA-----------THEEIHPTGMLSVVANLTPYSDHNQS 653
              F+     +  D    N +F A           TH E+ P  +L V A L PY  HNQS
Sbjct: 623  D-FLHDGLIEYLDVNEENDSFIAYQEVDIDPEKTTHLEVEPFTLLGVCAGLVPYPHHNQS 681

Query: 654  PRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAI 713
            PRN YQC M KQ MG      K R D  +Y++  PQTP+VR+ T      D+ P G NA 
Sbjct: 682  PRNTYQCAMGKQAMGIIGYNQKNRIDTLMYNIVYPQTPMVRSRTIELTNFDKLPAGQNAT 741

Query: 714  VAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DRGQKLFRRNKDA 772
            VAV++Y+GYD+EDA+ILNK+S+DRG     +Y+     +    N+  DR     + +   
Sbjct: 742  VAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTIKRYSNQTFDRIMGPMKDSLTN 801

Query: 773  KSL--HSVIDSDGLPYVGQMIHPGEPYCSIYD---------KTTNSWRTN---------- 811
            K +  H  +D+DG+      I PGE   S            K+TN               
Sbjct: 802  KIIFKHECLDTDGI------ISPGEKVLSKQTMVNKEMPAVKSTNPIEQKEAGQQPITYS 855

Query: 812  ----SRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQL 867
                + KG+E  +++ V V   N +    K  I  R TR P IGDKFSSRHGQKGV   +
Sbjct: 856  PVPITYKGTEPSYIEKVMVSTNNEEEFLVK--ILLRQTRRPEIGDKFSSRHGQKGVTGLI 913

Query: 868  WPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVK 927
                D+PF+   GM PD+++NPH FPSRMT+   LE + +K G L GKF   T F     
Sbjct: 914  VEQEDLPFNDF-GMSPDMVMNPHGFPSRMTVGKTLELLGSKAGVLEGKFHYGTAF----- 967

Query: 928  KTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRH 987
                  G  + + L DEL +     GFN+ G ++ YSG+ G  L   I+ GPVYYQ+L+H
Sbjct: 968  ------GGSKCQDLQDELFKN----GFNFLGKDIFYSGITGEPLEMYIYSGPVYYQKLKH 1017

Query: 988  MVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDY 1047
            MV DK   R+ G    +TRQP +GR R GG+R GEMERD L+++GA+ L+ +RL   SD 
Sbjct: 1018 MVQDKMHARARGPRAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMISSDA 1077

Query: 1048 HVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVF 1107
               DVC++CG +  +++                        CH C++S  +  ++MPY  
Sbjct: 1078 FDVDVCNVCGRLAYSSW------------------------CHNCRSSASVSKISMPYAC 1113

Query: 1108 RYLAAELAAMNIKITLQLGD 1127
            + L  EL +MNI   L+L +
Sbjct: 1114 KLLFQELTSMNIVPRLKLKN 1133


>gi|349581364|dbj|GAA26522.1| K7_Ret1p [Saccharomyces cerevisiae Kyokai no. 7]
          Length = 1149

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 344/1200 (28%), Positives = 542/1200 (45%), Gaps = 186/1200 (15%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
            F  ++ LV+ H++SF+Y +D  L ++                                  
Sbjct: 51   FLKVKGLVKQHLDSFNYFVDTDLKKIIKANQLILSDVDPEFYLKYVDIRVGKKSSSSTKD 110

Query: 37   ------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADS 90
                   CR   ++Y+  +  D+E  Y    + ++ +    G+ P+ML++ +C L  AD 
Sbjct: 111  YLTPPHECRLRDMTYSAPIYVDIE--YTRGRNIIMHKDVEIGRMPIMLRSNKCILYDADE 168

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
             K+  L E   + GGYFI+NG E+V   +++ +Q     ++  +  D ++G    +V   
Sbjct: 169  SKMAKLNECPLDPGGYFIVNGTEKV---ILVQEQLSKNRIIVEA--DEKKGIVQASVTSS 223

Query: 151  C-VRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
               RK ++ V  K     NG + L      +E  +P+ IVLKA    +DLEI   L C  
Sbjct: 224  THERKSKTYVITK-----NGKIYLKHNSIAEE--IPIAIVLKACGILSDLEIM-QLVCGN 275

Query: 210  DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV----IDGLQSE 265
            D  Y+            +   + L E   L + T+ Q L++IG   + +    +  LQ E
Sbjct: 276  DSSYQ------------DIFAVNLEESSKLDIYTQQQALEYIGAKVKTMRRQKLTILQ-E 322

Query: 266  SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPG 325
               A+A TVI  ++ V   D  +K   +  M +++   + +  + D+ D + N+ + L G
Sbjct: 323  GIEAIATTVIA-HLTVEALDFREKALYIAMMTRRVVMAMYNPKMIDDRDYVGNKRLELAG 381

Query: 326  HLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
             LI++  ++  + +    K  I   ++   +  ++  L +I        S  I + +   
Sbjct: 382  QLISLLFEDLFKKFNNDFKLSIDKVLKKPNRAMEYDALLSINV-----HSNNITSGLNRA 436

Query: 386  LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPE 444
            + TG  + +      +RAG T    RL+++  +     +   + F   R  S  R L P 
Sbjct: 437  ISTGNWSLKRFK--MERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRKVSGPRALQPS 492

Query: 445  SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
             +G LC   TP+GE CGL+ ++     + +         D  +     L  ++GV  I  
Sbjct: 493  QFGMLCTADTPEGEACGLVKNLALMTHITT---------DDEEEPIKKLCYVLGVEDI-- 541

Query: 505  LPKLVKSGPPAV-LSVLLDGRVVGVI--PSSEIEKVVAHLRRL-KVSAASVIPDDLEVGY 560
               L+ S    +   V L+G ++G I  P+  + +   HLRR  KVS            +
Sbjct: 542  --TLIDSASLHLNYGVYLNGTLIGSIRFPTKFVTQF-RHLRRTGKVSE-----------F 587

Query: 561  VPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFE-----QVFMEIRCPD 615
            + +        +++ T   +  RP+  +S      ++I L    +       F+++   +
Sbjct: 588  ISIYSNSHQMAVHIATDGGRICRPLIIVSDGQSRVKDIHLRKLLDGELDFDDFLKLGLVE 647

Query: 616  GGDGGRRN----------AFPA-THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAK 664
              D    N            P+ TH EI P  +L  VA L PY  HNQSPRN YQC M K
Sbjct: 648  YLDVNEENDSYIALYEKDIVPSMTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGK 707

Query: 665  QTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDM 724
            Q +G        R D  LY +  PQ P+V+T T      D+ P G NA VAV++Y+GYD+
Sbjct: 708  QAIGAIAYNQFKRIDTLLYLMTYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDI 767

Query: 725  EDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSL--HSVIDSD 782
            EDA++LNKSS+DRG    +  +  T  L    N         R +++ + +  H  +  D
Sbjct: 768  EDALVLNKSSIDRGFGRCETRRKTTTVLKRYANHTQDIIGGMRVDENGEPIWQHQSLGPD 827

Query: 783  GLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR---------------KGSESVFVDYVAVD 827
            GL  VG  +  G+ Y +    T ++   N                 +G E   +D V   
Sbjct: 828  GLGEVGMKVQSGQIYINKSVPTNSADAPNPNNVNVQTQYREAPVIYRGPEPSHIDQVM-- 885

Query: 828  MKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLII 887
            M  S N      +  R  R P +GDKFSSRHGQKGVC  +    DMPF+   G+ PD+I+
Sbjct: 886  MSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVKQEDMPFND-QGIVPDIIM 944

Query: 888  NPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGE 947
            NPH FPSRMT+  ++E ++ K G L+G     T F        G    D SK LVD+   
Sbjct: 945  NPHGFPSRMTVGKMIELISGKAGVLNGTLEYGTCFG-------GSKLEDMSKILVDQ--- 994

Query: 948  MLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQ 1007
                 GFNY G ++LYSG+ G  L   IF GP+YYQ+L+HMV DK   R+ G    +TRQ
Sbjct: 995  -----GFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQ 1049

Query: 1008 PIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHP 1067
            P +GR R GG+R GEMERD ++A+GA+ LL +RL   SD    DVC  CG +  + +   
Sbjct: 1050 PTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCDKCGLMGYSGW--- 1106

Query: 1068 QKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
                                 C  C++++ +  + +PY  + L  EL +MNI   L+L D
Sbjct: 1107 ---------------------CTTCKSAENIIKMTIPYAAKLLFQELLSMNIAPRLRLED 1145


>gi|330946834|ref|XP_003306807.1| hypothetical protein PTT_20050 [Pyrenophora teres f. teres 0-1]
 gi|311315506|gb|EFQ85086.1| hypothetical protein PTT_20050 [Pyrenophora teres f. teres 0-1]
          Length = 722

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 244/641 (38%), Positives = 362/641 (56%), Gaps = 64/641 (9%)

Query: 37  HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
             R+   +Y GK+ A ++++ ++ G     E  + G  P+ML++ RCHLQ      +V  
Sbjct: 122 EARERHATYRGKMRAQLQWR-INKGD-WQEEMADLGSVPIMLRSNRCHLQDLSPAAMVKS 179

Query: 97  KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
           KEE+ E GGYFI+NG E++ R + + ++NYPM++ R +F +R  GYT   + IR +R DQ
Sbjct: 180 KEESEEFGGYFIINGNEKMIRPLQVNRRNYPMAIKRGAFTNRGPGYTQFGIQIRSMRPDQ 239

Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
           +S T  L+YL +G+V   F  +  EYL+P+ +V+KALV+TND EIF  L           
Sbjct: 240 TSQTNALHYLDDGNVNFRFSWRKSEYLVPLVMVMKALVETNDREIFEGLVGA-----AGS 294

Query: 217 KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
           KG +    VS+RV+++L   +   L T+ +    +G+ F+ V+      S +      +R
Sbjct: 295 KGLLEKQFVSDRVELLLRTFKVYGLHTKAKTRAFLGQKFKVVLQLPPDISDFDGGTEFLR 354

Query: 277 DYIFVHLN-------DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
             +  HL         + DKF +L+FM +KL+SLV+     DNPD++Q+QEILL G L  
Sbjct: 355 KIVLPHLGCVAVTPAQDADKFRMLLFMTRKLYSLVEGECAVDNPDAVQSQEILLGGQLYG 414

Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDF-------FNLANIKKVMEKNPSKQIGTSI 382
           + LKE+LE+WL       Q  +   G+K ++       F      K++ +     IG ++
Sbjct: 415 MILKERLEEWLNS----FQLALREWGRKTEYKPIVSDDFRRDWTSKILRRT-KNNIGDAM 469

Query: 383 ETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLL 442
              L TG L + +GLD+QQ +GYTV AER+NF RFIS FR VHRGA FA L+TT+VRKLL
Sbjct: 470 SYFLSTGNLVSPSGLDMQQTSGYTVVAERINFFRFISHFRMVHRGAFFAQLKTTTVRKLL 529

Query: 443 PESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMI 502
           PESWGF       +G PCGLLNH    C++A+      N+ D S +   + ++ +     
Sbjct: 530 PESWGF-------NGSPCGLLNHFAHKCKIAT-----SNV-DVSAIPKLVAKLGVSSDSS 576

Query: 503 PSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVP 562
            SL + V         V LDGRV+G     + + +   LR  KV  +  +P +LE+GYVP
Sbjct: 577 ASLDESV--------VVQLDGRVLGFCSPKQAKIISDTLRYWKVEGSHGVPLELEIGYVP 628

Query: 563 LSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDG----GD 618
            S  G YPG+Y+F+   +  RPV+ + L       ++ +GPFEQ +M I C D     GD
Sbjct: 629 NSNNGQYPGVYMFSQSARMYRPVKYLPL-----NKLDYVGPFEQPYMSISCTDAEIVSGD 683

Query: 619 GGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQ 659
                   +TH E+ PT +LS+V+N TP+SD+NQSPRN+YQ
Sbjct: 684 --------STHVELDPTNILSIVSNQTPFSDYNQSPRNLYQ 716


>gi|294871589|ref|XP_002765980.1| DNA-directed RNA polymerase I subunit, putative [Perkinsus marinus
            ATCC 50983]
 gi|239866470|gb|EEQ98697.1| DNA-directed RNA polymerase I subunit, putative [Perkinsus marinus
            ATCC 50983]
          Length = 510

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 222/494 (44%), Positives = 297/494 (60%), Gaps = 31/494 (6%)

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH E+ P  MLSV+A LTP+S+HNQSPRNMYQCQM KQTM        +R D K+Y +  
Sbjct: 4    THIELSPISMLSVIAGLTPFSNHNQSPRNMYQCQMLKQTMAIPYLNHPYRTDNKVYKITY 63

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
            PQ P+VRT   ++   D  P GTNAIVAV+A++G+DMEDA+I++K S DRG  HG +Y+T
Sbjct: 64   PQFPMVRTTVLSEANFDVKPAGTNAIVAVIAHSGFDMEDALIISKGSYDRGFKHGSVYKT 123

Query: 748  ETIDLSDDGNKVDRGQKLFRRNKDAKSLHSV--IDSDGLPYVGQMIHPGEPYCSIYDKTT 805
            + I+    G    R  +    N   K    V  +D DG+PY+GQ +H G+P C + +K T
Sbjct: 124  KVINCPPKGTVGSRLAQFRADNHSVKGEKVVKDLDYDGIPYIGQQVHEGDPICRVLNKGT 183

Query: 806  NSWRTNSRKGSESVFVDYVAV--------------DMKNSKNLPQKANIRFRHTRNPIIG 851
               +    K  E  +V+ V +              +    K+  ++ +I+ R  RNP++G
Sbjct: 184  GEAKLEKYKEGEVAWVEQVNMIGGGGWWGGGAGARNPGGIKDGSERMSIKLRLPRNPVVG 243

Query: 852  DKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGS 911
            DKFSSRHGQKGV + LWP  DMPFS  +G+ PD++ NPH  PSRMTI ML+E +A K  +
Sbjct: 244  DKFSSRHGQKGVMAILWPQADMPFS-TSGISPDIMFNPHGMPSRMTIGMLIEFMAGKAAA 302

Query: 912  LHG-KFMDATPFANSVKKTNGDTGTDESK--------SLVDELGEMLRTCGFNYHGVEVL 962
            L G   ++A  F     K   DT  +  K        +  +  GE L+  G+ Y G E L
Sbjct: 303  LTGMPVVNANSFRQYRGKGLLDTEHNNEKDPYAPGDTTAHEYFGETLKKFGYEYLGAEEL 362

Query: 963  YSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGE 1022
            YSG++G  L   I++G VYYQRLRHMV DKFQVR+TG +D +TRQP+KGRK+ GG+RFGE
Sbjct: 363  YSGMHGEPLKTHIYMGVVYYQRLRHMVLDKFQVRATGPIDPLTRQPVKGRKKHGGVRFGE 422

Query: 1023 MERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPAR 1082
            MERDSL++HG + LL DRL  CSD     VC  CGS+L  ++ H  +   R  G    A+
Sbjct: 423  MERDSLISHGTSALLADRLLKCSDACEDWVCPECGSIL--SYAHSPETVKRYSGREAAAQ 480

Query: 1083 APKKVTCHACQTSK 1096
            AP    C AC T +
Sbjct: 481  AP---ICRACSTER 491


>gi|323302937|gb|EGA56741.1| Ret1p [Saccharomyces cerevisiae FostersB]
          Length = 1149

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 344/1200 (28%), Positives = 541/1200 (45%), Gaps = 186/1200 (15%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
            F  ++ LV+ H++SF+Y +D  L ++                                  
Sbjct: 51   FLKVKGLVKQHLDSFNYFVDTDLKKIIKANQLILSDVDPEFYLKYVDIRVGKKSSSSTKD 110

Query: 37   ------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADS 90
                   CR   ++Y+  +  D+E  Y    + ++ +    G+ P+ML++ +C L  AD 
Sbjct: 111  YLTPPHECRLRDMTYSAPIYVDIE--YTRGRNIIMHKDVEIGRMPIMLRSNKCILYDADE 168

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
             K+  L E   + GGYFI+NG E+V   +++ +Q     ++  +  D ++G    +V   
Sbjct: 169  SKMAKLNECPLDPGGYFIVNGTEKV---ILVQEQLSKNRIIVEA--DEKKGIVQASVTSS 223

Query: 151  C-VRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
               RK ++ V  K     NG + L      +E  +P+ IVLKA    +DLEI   L C  
Sbjct: 224  THERKSKTYVITK-----NGKIYLKHNSIAEE--IPIAIVLKACGILSDLEIM-QLVCGN 275

Query: 210  DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV----IDGLQSE 265
            D  Y+            +   + L E   L + T+ Q L++IG   + +    +  LQ E
Sbjct: 276  DSSYQ------------DIFAVNLEESSKLDIYTQQQALEYIGAKVKTMRRQKLTILQ-E 322

Query: 266  SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPG 325
               A+A TVI  ++ V   D  +K   +  M +++   + +  + D+ D + N+ + L G
Sbjct: 323  GIEAIATTVIA-HLTVEALDFREKALYIAMMTRRVVMAMYNPKMIDDRDYVGNKRLELAG 381

Query: 326  HLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
             LI++  ++  + +    K  I   ++   +  ++  L +I        S  I + +   
Sbjct: 382  QLISLLFEDLFKKFNNDFKLSIDKVLKKPNRAMEYDALLSINV-----HSNNITSGLNRA 436

Query: 386  LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPE 444
            + TG  + +      +RAG T    RL+++  +     +   + F   R  S  R L P 
Sbjct: 437  ISTGNWSLKRFK--MERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRKVSGPRALQPS 492

Query: 445  SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
             +G LC   TP+GE CGL+ ++     + +         D  +     L  ++GV  I  
Sbjct: 493  QFGMLCTADTPEGEACGLVKNLALMTHITT---------DDEEEPIKKLCYVLGVEDI-- 541

Query: 505  LPKLVKSGPPAV-LSVLLDGRVVGVI--PSSEIEKVVAHLRRL-KVSAASVIPDDLEVGY 560
               L+ S    +   V L+G ++G I  P+  + +   HLRR  KVS            +
Sbjct: 542  --TLIDSASLHLNYGVYLNGTLIGSIRFPTKFVTQF-RHLRRTGKVSE-----------F 587

Query: 561  VPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFE-----QVFMEIRCPD 615
            + +        +++ T   +  RP+  +S      ++I L    +       F+++   +
Sbjct: 588  ISIYSNSHQMAVHIATDGGRICRPLIIVSDGQSRVKDIHLRKLLDGELDFDDFLKLGLVE 647

Query: 616  GGDGGRRN----------AFPA-THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAK 664
              D    N            P+ TH EI P  +L  VA L PY  HNQSPRN YQC M K
Sbjct: 648  YLDVNEENDSYIALYEKDIVPSMTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGK 707

Query: 665  QTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDM 724
            Q +G        R D  LY +  PQ P+V+T T      D+ P G NA VAV++Y+GYD+
Sbjct: 708  QAIGAIAYNQFKRIDTLLYLMTYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDI 767

Query: 725  EDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSL--HSVIDSD 782
            EDA++LNKSS+DRG    +  +  T  L    N         R +++   +  H  +  D
Sbjct: 768  EDALVLNKSSIDRGFGRCETRRKTTTVLKRYANHTQDIIGGMRVDENGXPIWQHQSLGPD 827

Query: 783  GLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR---------------KGSESVFVDYVAVD 827
            GL  VG  +  G+ Y +    T ++   N                 +G E   +D V   
Sbjct: 828  GLGEVGMKVQSGQIYINKSVPTNSADAPNPNNVNVQTQYREAPVIYRGPEPSHIDQVM-- 885

Query: 828  MKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLII 887
            M  S N      +  R  R P +GDKFSSRHGQKGVC  +    DMPF+   G+ PD+I+
Sbjct: 886  MSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVKQEDMPFND-QGIVPDIIM 944

Query: 888  NPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGE 947
            NPH FPSRMT+  ++E ++ K G L+G     T F        G    D SK LVD+   
Sbjct: 945  NPHGFPSRMTVGKMIELISGKAGVLNGTLEYGTCFG-------GSKLEDMSKILVDQ--- 994

Query: 948  MLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQ 1007
                 GFNY G ++LYSG+ G  L   IF GP+YYQ+L+HMV DK   R+ G    +TRQ
Sbjct: 995  -----GFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQ 1049

Query: 1008 PIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHP 1067
            P +GR R GG+R GEMERD ++A+GA+ LL +RL   SD    DVC  CG +  + +   
Sbjct: 1050 PTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCDKCGLMGYSGW--- 1106

Query: 1068 QKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
                                 C  C++++ +  + +PY  + L  EL +MNI   L+L D
Sbjct: 1107 ---------------------CTTCKSAENIIKMTIPYAAKLLFQELLSMNIAPRLRLED 1145


>gi|254573076|ref|XP_002493647.1| Second-largest subunit of RNA polymerase III [Komagataella pastoris
            GS115]
 gi|238033446|emb|CAY71468.1| Second-largest subunit of RNA polymerase III [Komagataella pastoris
            GS115]
 gi|328354525|emb|CCA40922.1| DNA-directed RNA polymerase II subunit B [Komagataella pastoris CBS
            7435]
          Length = 1158

 Score =  414 bits (1064), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 342/1219 (28%), Positives = 540/1219 (44%), Gaps = 213/1219 (17%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
            F  ++ LV+ H++SF+Y +D+ L ++                                  
Sbjct: 51   FLQVKGLVKQHLDSFNYFVDKDLKKIIKANEKVLSDVDPEFYLKYLDIRVGYKSTEDLQK 110

Query: 37   ---------HCRQAKISYTGKLMADVEFQYLDAGSPVVRER-FNFGQFPVMLKTRRCHLQ 86
                      CR +  +Y+  +  DVE+     G  ++  R    G+ P+ML++ +C L+
Sbjct: 111  VKRNMIPPHQCRLSDTTYSAPIYVDVEYT---RGRKIIMHRDLEIGKMPIMLRSNKCILE 167

Query: 87   GADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKA 146
              D  ++ SL E   + GGYFI+NG E+V    IL ++    + +     D+++      
Sbjct: 168  SKDESQMASLCECPLDPGGYFIVNGTEKV----ILVQEQLSKNRIIVEADDKKQIVQASV 223

Query: 147  VVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLT 206
                  RK ++ V  K     N  + L      +E  +P+ +VLKA    +DLEI   L 
Sbjct: 224  TSSTHERKSKTYVVTK-----NNKIYLKHNSISEE--VPIVLVLKAAGIVSDLEIM-QLV 275

Query: 207  CCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID-GLQSE 265
            C  D  Y+            +   I   E   L + T+   L++IG+  + +   G    
Sbjct: 276  CGDDSTYQ------------DLFTINFEEAAKLDIHTQRDALEYIGKRVKTMRRLGAPKL 323

Query: 266  SYYAVAETVIRDYIFVHLNDNNDKFN----LLIFMLQKLFSLVDHTSVSDNPDSLQNQEI 321
            S Y      I + I  H++  +  F      L  M +++   + + ++ D+ D + N+ +
Sbjct: 324  SIYQEGVEAIANTIVAHISVEDLNFREKAIYLAIMTRRVVMAMHNPTMIDDRDYVGNKRL 383

Query: 322  LLPGHLITIYLKEKLEDWLRKGKKLIQDEIE------NNGKKFDFFNLANIKKVMEKNPS 375
             L G L+++      ED  +K     +  I+      N   +FD     N+        S
Sbjct: 384  ELAGQLMSLLF----EDLFKKFNSDFKANIDKILKKPNRASEFDALLSINVH-------S 432

Query: 376  KQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
              I T I   + TG  + +      +RAG T    RL+++  +     +   + F   R 
Sbjct: 433  NNITTGINRAISTGNWSLKRFK--MERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRK 488

Query: 436  TS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILR 494
             S  R L P  +G LC   TP+GE CGL+ ++     + +  D    +R           
Sbjct: 489  VSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTD-DEEEPVRKIC-------- 539

Query: 495  VLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVI--PSSEIEKVVAHLRRLKVSAASVI 552
             L+G   I  +   V S   +   V L+G ++GVI  P+  + K     R  KVSA    
Sbjct: 540  YLLGAEDIKIVDSSVISSR-SNFGVYLNGTMIGVIRYPTVFVTKFRKLRRSGKVSA---- 594

Query: 553  PDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNIS--LPSEESQNIELIGPFE---QV 607
                   ++ + +   +  ++L     +  RP+  +   +   E+ +++ +   E     
Sbjct: 595  -------FISIYINSHHKAVHLAADGGRICRPLIIVENGVSKVEAHHLQKLKDGEWQFDS 647

Query: 608  FMEIRCPDGGDGGRRN-----------AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656
            F+     +  D    N               TH EI P  +L  VA L PY  HNQSPRN
Sbjct: 648  FLTNGLVEYLDVNEENDSLIALYEKDIKNYTTHLEIEPFTVLGAVAGLIPYPHHNQSPRN 707

Query: 657  MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
             YQC M KQ +G        R D  LY +  PQ P+V+T T    G D+ P G NA VAV
Sbjct: 708  TYQCAMGKQAIGAIGYNQFNRIDTLLYLMVYPQQPMVKTKTIELIGYDKLPAGQNATVAV 767

Query: 717  LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV----------DRGQKLF 766
            ++Y+GYD+EDA++LNK+S+DRG    Q+++  T  L    N            D+G+ +F
Sbjct: 768  MSYSGYDIEDALVLNKASIDRGFGRCQVFRKNTTLLKRYPNHTKDILGGMSVNDQGEPIF 827

Query: 767  RRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYC----------SIYDKTTNSWRTNSR--- 813
            +        H  +  DGL  VG  +  G+ Y           SI  +T +  +   +   
Sbjct: 828  Q--------HRSLGPDGLGEVGLPLESGQVYVNKFVPINSEESIIGQTPDDSQRKEQHRE 879

Query: 814  -----KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLW 868
                 +G E  ++D + + +  +  +  KA    R TR P +GDKFSSRHGQKGVC  + 
Sbjct: 880  TPMVYRGPEPSYIDQMMMSLGENDQVLVKA--LLRQTRRPELGDKFSSRHGQKGVCGIIV 937

Query: 869  PDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKK 928
               D+PF+   G+ PD+I+NPH FPSRMT+  ++E ++ K G L G     T F      
Sbjct: 938  QQEDLPFND-DGISPDIIMNPHGFPSRMTVGKMIELISGKAGVLDGSLQYGTCFG----- 991

Query: 929  TNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHM 988
                 G+D     + E+ ++L   GF+Y G + LYSG+ G  L   IF GP+YYQ+L+HM
Sbjct: 992  -----GSD-----LKEMSQILIDKGFSYSGKDQLYSGITGECLQAYIFFGPIYYQKLKHM 1041

Query: 989  VSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYH 1048
            V DK   RS G    +TRQP +GR R GG+R GEMERD ++A+GA+ LL +RL   SD  
Sbjct: 1042 VLDKMHARSRGPRAVLTRQPTEGRSRDGGLRLGEMERDCVVAYGASQLLLERLMISSDAF 1101

Query: 1049 VADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFR 1108
              DVC+ CG +    +                        C  C++S+ +  + +PY  +
Sbjct: 1102 EVDVCNTCGLMGYNGW------------------------CPTCKSSEFIIKMTIPYAAK 1137

Query: 1109 YLAAELAAMNIKITLQLGD 1127
             L  EL +MNI   L+LGD
Sbjct: 1138 LLFQELVSMNIAPRLELGD 1156


>gi|156839387|ref|XP_001643385.1| hypothetical protein Kpol_479p15 [Vanderwaltozyma polyspora DSM
            70294]
 gi|156113993|gb|EDO15527.1| hypothetical protein Kpol_479p15 [Vanderwaltozyma polyspora DSM
            70294]
          Length = 1139

 Score =  414 bits (1064), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 345/1194 (28%), Positives = 538/1194 (45%), Gaps = 177/1194 (14%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
            F  ++ LV+ H++SF+Y +D  L ++                                  
Sbjct: 44   FLKVKGLVKQHLDSFNYFVDVDLKKIIKANQLILSDVDPEFYLKYVDIRIGQRSSSSSKD 103

Query: 37   ------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADS 90
                   CR   ++Y+  +  D+E  Y    + ++ +    G+ P+ML++ +C L GAD 
Sbjct: 104  YLTPPHECRLRDMTYSAPIYVDIE--YTRGRNIIMHKDVEIGRMPIMLRSNKCILNGADD 161

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
              +  L E   + GGYFI+NG E+V    IL ++    + +     +++E          
Sbjct: 162  SMMAKLNECPLDPGGYFIVNGTEKV----ILVQEQLSKNRIIVEADEKKEIVQASVTSST 217

Query: 151  CVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYD 210
              RK ++ V  K     NG + L      +E  +P+ IVLKA    +DLEI   L C  D
Sbjct: 218  HERKSKTYVVTK-----NGKIYLKHNSIAEE--VPIAIVLKACGIISDLEIM-QLVCGND 269

Query: 211  EKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV----IDGLQSES 266
              Y+            +   + L E    ++ T+ Q L++IG   + +    +  LQ E 
Sbjct: 270  SSYQ------------DIFAVNLEEAAKYNIYTQRQALEYIGGKVKTIRRQKLSILQ-EG 316

Query: 267  YYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGH 326
              A+A TVI  ++ V   D  +K   +  M +++   + +  + D+ D + N+ + L G 
Sbjct: 317  IEAIATTVIA-HLTVEALDFREKALYVAMMARRVVMAMHNPKMVDDRDYVGNKRLELAGQ 375

Query: 327  LITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETML 386
            LI++  ++  + +    K  I   ++   +  ++  L +I        S  I + +   +
Sbjct: 376  LISLLFEDLFKKFNSDFKASIDKVLKKPNRAMEYDALLSINV-----HSNNITSGLNRAI 430

Query: 387  KTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPES 445
             TG  + +      +RAG T    RL+++  +     +   + F   R  S  R L P  
Sbjct: 431  STGNWSLKRFK--MERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRKVSGPRALQPSQ 486

Query: 446  WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
            +G LC   TP+GE CGL+ ++     + +  D    I++        L  ++GV  I   
Sbjct: 487  FGMLCTADTPEGEACGLVKNLALMTHITTD-DEEEPIKN--------LCFVLGVENIC-- 535

Query: 506  PKLVKSGPPAV-LSVLLDGRVVGVI--PSSEIEKVVAHLRRL-KVSAASVIPDDLEVGYV 561
              LV S    +  +V L+G ++G I  P+  + +   HLRR  KVS            ++
Sbjct: 536  --LVDSATLHLNYTVHLNGTLIGTIRFPARFVSQF-RHLRRTGKVSE-----------FI 581

Query: 562  PLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFE-----QVFMEIRCPDG 616
             +        +++ T   +  RP+  ++          L    E       F+++   + 
Sbjct: 582  SIYTNSHQRAVHIATDGGRICRPLIIVTAGKSHVNAEHLKELLEGKLVFDDFLKLGLVEY 641

Query: 617  GDGGRRN-AFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQ 665
             D    N +F A          TH EI P  +L  VA L PY  HNQSPRN YQC M KQ
Sbjct: 642  LDVNEENDSFIALYEKDINENVTHMEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQ 701

Query: 666  TMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDME 725
             +G        R D  LY +  PQ P+V+T T      D+ P G NA VAV++Y+GYD+E
Sbjct: 702  AIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIE 761

Query: 726  DAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSL--HSVIDSDG 783
            DA++LNKSS+DRG    +  +  T  L    N         R +++ K +  H  +  DG
Sbjct: 762  DALVLNKSSIDRGFGRCETRRKTTTVLKKYPNHTQDIIGGMRVDENGKPIWQHEPLGPDG 821

Query: 784  LPYVGQMIHPGEPYC--SIYDKTTNSWRTNSRKGSESVFVDYVA--------VDMKNSKN 833
            L  VG  +  G+ Y   S+   +      N++   +   V Y A        V M  S N
Sbjct: 822  LGEVGVQVTSGQIYINKSVPTNSGEGVLANTQAQYKETPVIYRAPEPSRIDQVMMSVSDN 881

Query: 834  LPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFP 893
                  +  R  R P +GDKFSSRHGQKGVC  +    DMPF+   G+ PD+I+NPH FP
Sbjct: 882  DQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVNHEDMPFND-DGISPDIIMNPHGFP 940

Query: 894  SRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCG 953
            SRMT+  ++E V+ K G L+G     T F        G    D S+ LVD+        G
Sbjct: 941  SRMTVGKMIELVSGKAGVLNGSLEYGTCFG-------GSKLEDMSRILVDK--------G 985

Query: 954  FNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRK 1013
            FNY G ++LYSG+ G  L   IF GP+YYQ+L+HMV DK   R+ G    +TRQP +GR 
Sbjct: 986  FNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRS 1045

Query: 1014 RGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIR 1073
            R GG+R GEMERD ++A+GA+ LL +RL   SD    DVC  CG +  + +         
Sbjct: 1046 RDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCDKCGLMGYSGW--------- 1096

Query: 1074 EIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
                           C  C++++    + +PY  + L  EL +MNI   L+L D
Sbjct: 1097 ---------------CSTCKSAEHNNKMTIPYAAKLLFQELLSMNIAPRLRLED 1135


>gi|401889092|gb|EJT53032.1| DNA-directed RNA polymerase [Trichosporon asahii var. asahii CBS
            2479]
          Length = 1213

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 331/1148 (28%), Positives = 519/1148 (45%), Gaps = 175/1148 (15%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRER--FNFGQFPVMLKTRRCHLQGADSQKLV 94
             CR    +Y+G +  D+E+ + D     +R++   + G  P+ML++  CHL G +  +L 
Sbjct: 182  ECRLTDNTYSGGIYVDIEYTHEDK----IRKQQGIHIGSLPIMLRSDLCHLAGKNDLELA 237

Query: 95   SLKEEAAEMGGYFILNGLERVF---------RSVIL--PKQNYPMSMVRSSFRDRREGYT 143
             + E   + GGYF++ G E+V          R +++  PK++   + V SS  DR     
Sbjct: 238  RMGECPLDPGGYFVVKGTEKVILVQEQLSKNRIIVMTDPKKDVTTAEVTSSTHDR----- 292

Query: 144  DKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFN 203
                V++              Y+   + RL       +  +P+ I LKA+  T+D EI  
Sbjct: 293  ----VVKT-------------YVTTKASRLYLRHSSFKEPIPIVIALKAMGVTSDKEIL- 334

Query: 204  HLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID--- 260
             L C  DEKY++  G            + L E   L + TR + L+ IG    P  +   
Sbjct: 335  QLVCGPDEKYQEAFG------------MSLEEAARLRVYTRREALEWIGARVSPTQEKED 382

Query: 261  ------------GLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTS 308
                         +Q+ +   +    +RD  F        K   L  M +++ + +   +
Sbjct: 383  RSLGHKLTPTDMAMQALAAMVLGHVPVRDMNF------RPKAIYLATMSRRVLAAMLDEN 436

Query: 309  VSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKK 368
            + D+ D + N+ + L G L+++  ++  + +    KK +   +E   +   F    +   
Sbjct: 437  MVDDRDYVGNKRLELAGQLLSLLFEDSFKTFNSDLKKRMDKILEKKTRAGPF----DAST 492

Query: 369  VMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGA 428
            ++       I ++    + TG  + +      +RAG T    RL+F+  +     +   +
Sbjct: 493  LVRTGGGDIITSAFVRSISTGNWSLKRFH--VERAGVTHVLSRLSFIAALGMMTRIT--S 548

Query: 429  SFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSK 487
             F   R  S  R L P  WG LCP  TP+GE CGL+ ++     + +         D  +
Sbjct: 549  QFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITT---------DVPE 599

Query: 488  MRTSILRVLIGVGMIPSLP---KLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRL 544
                 L  ++G   I SL    +L + G   V  V ++G ++GV  ++   K V   R+L
Sbjct: 600  DPLIKLAFMLGAEDI-SLATGNELYRDG---VHLVQVNGNLIGV--TALPRKFVRTFRKL 653

Query: 545  KVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNIS--LPSEESQNIELIG 602
            + S  +         +V + +      +Y+ +   +  RP+  +    P   S++++L+ 
Sbjct: 654  RRSGRTS-------EFVSIYINHHQRVIYIASDGGRICRPLIIVENGRPRVTSEHMQLLK 706

Query: 603  PFEQVF---MEIRCPDGGDGGRRN-AFPA----------THEEIHPTGMLSVVANLTPYS 648
              +  F   +     +  D    N +F A          TH EI P  +L  VA L PY 
Sbjct: 707  AGKVTFDHFLRSGLVEYLDVNEENDSFIACYESEITEDTTHLEIEPFTILGAVAGLIPYP 766

Query: 649  DHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPT 708
             HNQSPRN YQC M KQ +G        R D  LY +  PQ P+V+T T    G D  P 
Sbjct: 767  HHNQSPRNTYQCAMGKQAIGAIAYNQLNRIDTLLYLMTYPQQPMVKTKTIELVGYDRLPA 826

Query: 709  GTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRR 768
            G NA VAV++Y+GYD+EDA+I+N++S DRG     + + +TI +    N       +   
Sbjct: 827  GQNATVAVMSYSGYDIEDALIVNRASADRGFGRCHVLKKQTIPIRSFPNGTSERLAMLPP 886

Query: 769  NKDAKSLHSVIDSDGLPYVGQMIHPGE-------PYCSIYDKTTNSWRTN--SRKGSESV 819
            ++  ++ HS +D DGL   G ++  G+       P  +     T  ++    + K  E  
Sbjct: 887  DQRPET-HSWLDQDGLVAPGSVVSQGDVLAARETPMDTRGPGPTVGFKATPVAHKLPEPT 945

Query: 820  FVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVT 879
             +D V V      N  Q   I  R TR P +GDKFSSRHGQKGVC  + P  DMPF+   
Sbjct: 946  NIDKVMVTDTEDGN--QLIKILTRQTRRPELGDKFSSRHGQKGVCGLIVPQQDMPFND-Q 1002

Query: 880  GMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESK 939
            G+ PD+I+NPH FPSRMT+  ++E ++ K G + GK    T F        G    D S+
Sbjct: 1003 GICPDIIMNPHGFPSRMTVGKMIELLSGKAGLMAGKLQYGTAFG-------GSKVVDMSQ 1055

Query: 940  SLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTG 999
             L+D         GF+Y G + L SG+ G  L   ++ GP+YYQ+L+HMV DK   R TG
Sbjct: 1056 ILID--------AGFSYAGKDTLTSGITGESLETYVYFGPIYYQKLKHMVMDKMHARPTG 1107

Query: 1000 TMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSV 1059
                +TRQP +GR + GG+R GEMERD L+ +GA  LL +RL   SD   A VC  CG +
Sbjct: 1108 PRANLTRQPTEGRSKDGGLRLGEMERDCLIGYGATQLLLERLMISSDAFDAQVCETCGML 1167

Query: 1060 LTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
              + +                        C  CQ+SK +  + MPY  + L  EL  MNI
Sbjct: 1168 AYSGW------------------------CKGCQSSKAVVKITMPYAAKLLIQELIGMNI 1203

Query: 1120 KITLQLGD 1127
               L + D
Sbjct: 1204 LPKLVMED 1211


>gi|365986765|ref|XP_003670214.1| hypothetical protein NDAI_0E01550 [Naumovozyma dairenensis CBS 421]
 gi|343768984|emb|CCD24971.1| hypothetical protein NDAI_0E01550 [Naumovozyma dairenensis CBS 421]
          Length = 1154

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 340/1197 (28%), Positives = 533/1197 (44%), Gaps = 182/1197 (15%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
            F  ++ LV+ H++SF+Y +D  L ++                                  
Sbjct: 57   FLKVKGLVKQHLDSFNYFVDVDLKKIIKANQLILSDVDPEFYLKYVDIRVGKKSTSSARD 116

Query: 37   ------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADS 90
                   CR   ++Y+  +  D+E  Y    + ++ +    G+ P+ML++ +C L GAD 
Sbjct: 117  YLTPPHECRLRDMTYSAPIYVDIE--YTRGRNIIMHKDVEIGRMPIMLRSNKCTLYGADE 174

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            +++  L E   + GGYFI+NG E+V   +++ +Q     ++  +  D ++G    +V   
Sbjct: 175  KQMAKLNECPLDPGGYFIVNGTEKV---ILVQEQLSKNRIIVEA--DEKKGIVQASVTSS 229

Query: 151  C-VRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
               RK ++ V  K     NG + L      +E  +P+ IVLKA    +DLEI   L C  
Sbjct: 230  THERKSKTYVITK-----NGKIYLKHNSIAEE--IPIVIVLKACGIVSDLEIM-QLVCGN 281

Query: 210  DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV----IDGLQSE 265
            D  Y+            +   + L E   L+L T+ Q L+ IG   + +    +  LQ E
Sbjct: 282  DSSYQ------------DIFAVNLEEAAKLNLYTQQQALEFIGAKVKTMRRQKLSILQ-E 328

Query: 266  SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPG 325
               A+A TV+  ++ V   D  +K   +  M +++   + +  + D+ D + N+ + L G
Sbjct: 329  GIEAIATTVVA-HLTVEALDFREKALYMAMMTRRVVMAIHNPKMVDDRDYVGNKRLELAG 387

Query: 326  HLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
             ++++  ++  + +    K  I   +E   +  ++  L +I        S  I + +   
Sbjct: 388  QMVSLLFEDLFKKFNSDFKATIDKVLEKPNRAMEYDALLSINV-----HSNNITSGLNRA 442

Query: 386  LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPE 444
            + TG  + +      +RAG T    RL+++  +     +   + F   R  S  R L P 
Sbjct: 443  ISTGNWSLKRF--KMERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRKVSGPRALQPS 498

Query: 445  SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
             +G LC   TP+GE CGL+ ++     + S                 I RV   +G +  
Sbjct: 499  QFGMLCTADTPEGEACGLVKNLALMTHITS-----------DDEEEPIKRVCYVLG-VED 546

Query: 505  LPKLVKSGPPAVLSVLLDGRVVGV--IPSSEIEKVVAHLRRL-KVSAASVIPDDLEVGYV 561
            +  +  +       V L+G ++G    P   + +   HLRR  KVS            ++
Sbjct: 547  ISLIDSASLHLNFGVYLNGTLIGTTRFPIKFVSQ-FRHLRRTGKVSE-----------FI 594

Query: 562  PLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFE-----QVFMEIRCPDG 616
             +        +++ T   +  RP+  ++          L    E       F+++   + 
Sbjct: 595  SIYTNSHQKAVHIATDGGRICRPLIIVTNGKSHVTADHLRSLLEGKLVFDDFLKLGLVEY 654

Query: 617  GDGGRRN-AFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQ 665
             D    N +F A          TH EI P  +L  VA L PY  HNQSPRN YQC M KQ
Sbjct: 655  LDVNEENDSFIALYEKDINVASTHMEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQ 714

Query: 666  TMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDME 725
             +G        R D  LY +  PQ P+V+T T      D+ P G NA VAV++Y+GYD+E
Sbjct: 715  AIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIE 774

Query: 726  DAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFR--RNKDAKSLHSVIDSDG 783
            DA+++NK+S+DRG    +  +  T  L    N         R   N D    H  +  DG
Sbjct: 775  DALVINKASIDRGFGRCETRRKTTTILKRYPNHTQDIISGMRVDENGDPIWQHKALGPDG 834

Query: 784  LPYVGQMIHPGEPYCSIYDKTTNSWRTNSR-------------KGSESVFVDYVAVDMKN 830
            L  VG  +  G+ Y +    T  +   N+              +  E   +D V   M  
Sbjct: 835  LGEVGMKLDSGQIYINKAVPTNPTSDLNAAPEQSQYRDTPVMYRAPEPSHIDQVM--MSV 892

Query: 831  SKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPH 890
            S N      +  R  R P +GDKFSSRHGQKGVC  +    DMPF+   G+ PD+I+NPH
Sbjct: 893  SDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVQQEDMPFND-QGIVPDIIMNPH 951

Query: 891  AFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLR 950
             FPSRMT+  ++E V+ K G L+G     T F        G    D SK LVD+      
Sbjct: 952  GFPSRMTVGKMIELVSGKAGVLNGSLEYGTCFG-------GSKLEDMSKILVDQ------ 998

Query: 951  TCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIK 1010
              GFNY G ++LYSG+ G  L   IF GP+YYQ+L+HMV DK   R+ G    +TRQP +
Sbjct: 999  --GFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTE 1056

Query: 1011 GRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKR 1070
            GR R GG+R GEMERD ++A+GA+ LL +RL   SD    DVC  CG +  + +      
Sbjct: 1057 GRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCDECGLMGYSGW------ 1110

Query: 1071 AIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
                              C  C++++ +  + +PY  + L  EL +MNI   L+L D
Sbjct: 1111 ------------------CTTCKSAENIIKMTIPYAAKLLFQELLSMNIAPRLRLED 1149


>gi|367009214|ref|XP_003679108.1| hypothetical protein TDEL_0A05650 [Torulaspora delbrueckii]
 gi|359746765|emb|CCE89897.1| hypothetical protein TDEL_0A05650 [Torulaspora delbrueckii]
          Length = 1142

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 343/1195 (28%), Positives = 540/1195 (45%), Gaps = 180/1195 (15%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
            F  ++ LV+ H++SF+Y +D  L ++                                  
Sbjct: 48   FLKVKGLVKQHLDSFNYFVDVDLRKIIKANQLILSDVDPEFYLKYVDIRVGQRSNGSKDY 107

Query: 37   -----HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQ 91
                  CR   ++Y+  +  D+E  Y    + ++ +    G+ PVML++ +C L  +D  
Sbjct: 108  LTPPHECRLRDMTYSAPIYVDIE--YTRGRNIIMHKDVEIGRMPVMLRSNKCILHESDEA 165

Query: 92   KLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC 151
             +  L E   + GGYFI+NG E+V    IL ++        S  R   E    KA+V   
Sbjct: 166  MMAKLNECPLDPGGYFIVNGTEKV----ILVQEQL------SKNRIIVEADEKKAIV--- 212

Query: 152  VRKDQSSVTLKLY------YLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHL 205
                Q+SVT   +      Y++  + ++          +P+ +VLKA    +DLE+   L
Sbjct: 213  ----QASVTSSTHERKSKTYVVTKNEKIYLKHNSIAEDIPIVVVLKACGIVSDLEVM-QL 267

Query: 206  TCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV----IDG 261
             C  D  Y+            +   I L E   L+L T+ Q L++IG   + V    +  
Sbjct: 268  VCGNDSSYQ------------DIFAINLEEAAKLNLYTQQQALEYIGSKVKTVRRQKLSV 315

Query: 262  LQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEI 321
            LQ E   A+A TVI  ++ V   D  +K   +  M +++   + +  + D+ D + N+ +
Sbjct: 316  LQ-EGIEAIATTVIA-HLTVEALDFREKALYIAIMTRRVVMAIYNPKMVDDRDYVGNKRL 373

Query: 322  LLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTS 381
             L G LI++  ++  + +    K  I   ++   +  ++  L +I        S  I + 
Sbjct: 374  ELAGQLISLLFEDLFKKFNSDFKASIDKVLKKPNRAMEYDALLSINV-----HSNNITSG 428

Query: 382  IETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRK 440
            +   + TG  + +      +RAG T    RL+++  +     +   + F   R  S  R 
Sbjct: 429  LNRAISTGNWSLKRFK--MERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRKVSGPRA 484

Query: 441  LLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVG 500
            L P  +G LC   TP+GE CGL+ ++     + +         D  +     L  L+GV 
Sbjct: 485  LQPSQFGMLCTADTPEGEACGLVKNLALMTHITT---------DDEEEPIKKLCYLLGVE 535

Query: 501  MIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGY 560
             I  L     +       V L+G ++G   +    K + H R L+ S+           +
Sbjct: 536  DISLLDS---ASLHLNYGVHLNGTLIGT--TKYPTKFITHFRNLRRSSKVS-------AF 583

Query: 561  VPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSE--ESQNIELIGPFEQVF---MEIRCPD 615
            + +        +++ T   +  RP+  +S      ++ +++ +   E VF   +++   +
Sbjct: 584  ISIYANSHQKAVHIATDGGRICRPLIIVSDGQSRVKADHLKKLLDGELVFDDFLKLGLVE 643

Query: 616  GGDGGRRN-AFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAK 664
              D    N +F A          TH EI P  +L  VA L PY  HNQSPRN YQC M K
Sbjct: 644  YLDVNEENDSFIALYEKDIDQNITHMEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGK 703

Query: 665  QTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDM 724
            Q +G        R D  LY +  PQ P+V+T T      D+ P G NA VAV++Y+GYD+
Sbjct: 704  QAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDI 763

Query: 725  EDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSL--HSVIDSD 782
            EDA++LNKSS+DRG    +  +  T  L    N         R +++ + +  H  +  D
Sbjct: 764  EDALVLNKSSIDRGFGRCETRRKNTTVLKRYPNHTQDIIGGMRVDENGEPIWQHKCLGPD 823

Query: 783  GLPYVGQMIHPGEPYC--SIYDKTTNSWRTNSRKGSESVFVDYVA--------VDMKNSK 832
            GL  VG  +  G+ Y   SI   + +   TN++   +   V Y A        V M  S 
Sbjct: 824  GLGEVGMKLDSGQIYINKSIPTNSGDGVLTNTQSQYKETPVIYRAPEPSHIDQVMMSVSD 883

Query: 833  NLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAF 892
            N      +  R  R P +GDKFSSRHGQKGVC  +    DMPF+   G+ PD+I+NPH F
Sbjct: 884  NDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVKQEDMPFND-QGICPDIIMNPHGF 942

Query: 893  PSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTC 952
            PSRMT+  ++E ++ K G L+G     T F        G    D +K LVD         
Sbjct: 943  PSRMTVGKMIELISGKAGVLNGTLEYGTCFG-------GSKLEDMTKILVDN-------- 987

Query: 953  GFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGR 1012
            GFNY G ++LYSG+ G  L   IF GP+YYQ+L+HMV DK   R+ G    +TRQP +GR
Sbjct: 988  GFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 1047

Query: 1013 KRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAI 1072
             R GG+R GEMERD ++A+GA+ LL +RL   SD    DVC+ CG +  + +        
Sbjct: 1048 SRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCNKCGLMGYSGW-------- 1099

Query: 1073 REIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
                            C  C++++ +  + +PY  + L  EL +MNI   L+L D
Sbjct: 1100 ----------------CTTCRSAENINKMTIPYAAKLLFQELLSMNIAPRLRLED 1138


>gi|50310217|ref|XP_455128.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644264|emb|CAG97835.1| KLLA0F01078p [Kluyveromyces lactis]
          Length = 1142

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 342/1194 (28%), Positives = 540/1194 (45%), Gaps = 178/1194 (14%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
            F  ++ LV+ H++SF+Y +D  L ++                                  
Sbjct: 48   FLKVKGLVKQHLDSFNYFVDVDLKKIIKANEVILSDVDPEFYLKYIDIRVGYKHNGNKAI 107

Query: 37   -----HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQ 91
                  CR   ++Y+  +  D+E  Y    S V+      G+ P+ML++ +C L GA   
Sbjct: 108  MTPPHECRLRDMTYSTPIFVDIE--YTRGRSIVLHRDVEIGRMPIMLRSNKCILDGAAEN 165

Query: 92   KLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC 151
             +  L E   + GGYFI+NG E+V    IL ++    + +     +++            
Sbjct: 166  DMAKLNECPLDPGGYFIVNGTEKV----ILVQEQLSKNRIIVEADEKKNIVQASVTSSTH 221

Query: 152  VRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDE 211
             RK ++ V  K     N  + L      +E  +P+ +VLKA    +DLEI   L C  D 
Sbjct: 222  ERKSKTYVVTK-----NDKIYLKHNSIAEE--VPIVVVLKACGVVSDLEIM-QLVCGNDS 273

Query: 212  KYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV----IDGLQSESY 267
             Y+            +   + L E  +L + T+ Q L+ IG   + V    +  LQ E  
Sbjct: 274  SYQ------------DIFAVNLEEAAELKIYTQQQALEFIGTKVKTVRRQKLSILQ-EGI 320

Query: 268  YAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
             A+A TVI  ++ V   D  +K   +  M +++   +D+  + D+ D + N+ + L G L
Sbjct: 321  EAIATTVIA-HLTVEALDFREKALYIAMMTRRVVMAIDNPKMVDDRDYVGNKRLELAGQL 379

Query: 328  ITIYLKEKLEDWLRKGKKLIQDEIE--NNGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
            +++  ++  + +    K  I   ++  N  + +D     N+        S  I T +   
Sbjct: 380  MSLLFEDLFKKFNNDFKANIDKVLKKPNRAEMYDALLTINVH-------SNNITTGMNRA 432

Query: 386  LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPE 444
            + TG  + +      +RAG T    RL+++  +     +   + F   R  S  R L P 
Sbjct: 433  ISTGNWSLKRFK--MERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRKVSGPRALQPS 488

Query: 445  SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
             +G LC   TP+GE CGL+ ++     + +  D    I+     R   L  +  + +I S
Sbjct: 489  QFGMLCTSDTPEGEACGLVKNLALMTHITTD-DEEEPIK-----RICYLLGVEDISLIDS 542

Query: 505  LPKLVKSGPPAVLSVLLDGRVVGV--IPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVP 562
                +  G      V L+G ++G    P+    K V+  R L+ +  +         ++ 
Sbjct: 543  ASIHLNYG------VYLNGTIIGTTRFPT----KFVSQFRCLRRTGRAS-------EFIS 585

Query: 563  LSLGGAYPGLYLFTSPPKFVRPVRNIS-----LPSEESQNIELIGPFE-QVFMEIRCPDG 616
            +        +++ T   +  RP+  +S     + ++  +++ L G  +   F+++   + 
Sbjct: 586  IYTNTHQKAVHIATDGGRICRPLIIVSNGQSSVTADHLRSL-LAGKLQFDDFLKLGLVEY 644

Query: 617  GDGGRRN-AFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQ 665
             D    N +F A          TH EI    +L  VA L PY  HNQSPRN YQC M KQ
Sbjct: 645  LDVNEENDSFIALYEKDLSENITHLEIESFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQ 704

Query: 666  TMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDME 725
             +G        R D  LY +  PQ P+V+T T      D+ P G NA VAV++Y+GYD+E
Sbjct: 705  AIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIE 764

Query: 726  DAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSL--HSVIDSDG 783
            DA++LNK+S+DRG    +  +  T  L    N         R +++ + +  H  +  DG
Sbjct: 765  DALVLNKASIDRGFGRCETRRKNTTVLKRYPNHTQDIIGGMRVDENGEPIWQHQALGPDG 824

Query: 784  LPYVGQMIHPGEPYC--SIYDKTTNSWRTNSRKGSESVFVDYVA--------VDMKNSKN 833
            L  VG  +  G+ Y   S+    ++S  T ++   +   V Y A        V M  S N
Sbjct: 825  LGEVGMKVESGQIYVNKSVPTNASDSILTQTQAQYKETPVVYRAPEPSHIDQVMMSVSDN 884

Query: 834  LPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFP 893
                  +  R  R P +GDKFSSRHGQKGVC  +    D+PF+   G+ PD+I+NPH FP
Sbjct: 885  DQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVKQEDLPFND-QGVVPDIIMNPHGFP 943

Query: 894  SRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCG 953
            SRMT+  ++E ++ K G L+G     T F        G    D SK LVD         G
Sbjct: 944  SRMTVGKMIELISGKAGVLNGTLEYGTCFG-------GSKLEDMSKILVDN--------G 988

Query: 954  FNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRK 1013
            FNY G ++LYSG+ G  L   IF GP+YYQ+L+HMV DK   R+ G    +TRQP +GR 
Sbjct: 989  FNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRS 1048

Query: 1014 RGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIR 1073
            R GG+R GEMERD ++A+GA+ LL +RL   SD    DVC  CG +  + +         
Sbjct: 1049 RDGGLRLGEMERDCVIAYGASQLLLERLMLSSDAFEVDVCEKCGLMGYSGW--------- 1099

Query: 1074 EIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
                           C +C+T++ +  + +PY  + L  EL AMNI   L+LGD
Sbjct: 1100 ---------------CTSCKTAEHVVKMTIPYAAKLLFQELLAMNIAPRLKLGD 1138


>gi|444316230|ref|XP_004178772.1| hypothetical protein TBLA_0B04150 [Tetrapisispora blattae CBS 6284]
 gi|387511812|emb|CCH59253.1| hypothetical protein TBLA_0B04150 [Tetrapisispora blattae CBS 6284]
          Length = 1148

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 348/1200 (29%), Positives = 541/1200 (45%), Gaps = 192/1200 (16%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
            F  ++ LV+ H++SF++ +D  L ++                                  
Sbjct: 52   FLKVKGLVKQHLDSFNFFVDVDLKKIIKANRLILSDVDPEFYLKFIDIRIGQRSNSSSKD 111

Query: 37   ------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADS 90
                   CR   ++Y+  +  D+E  Y    + V+      G+ P+ML++ +C L G D 
Sbjct: 112  ILAPPHECRLRDMTYSAPIYVDIE--YTRGRNIVIHRDVEIGKMPIMLRSNKCILNGCDE 169

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            Q +  L E   + GGYFI+NG E+V   +++ +Q     ++  +  D ++G    +V   
Sbjct: 170  QMMARLNECPLDPGGYFIVNGTEKV---ILVQEQLSKNRIIVEA--DEKKGVVQASVTSS 224

Query: 151  C-VRKDQSSVTLK--LYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTC 207
               RK ++ V  K    YL + S+            +P+ IVLKA    +DLEI   L C
Sbjct: 225  THERKSKTYVVTKNDKIYLKHNSISED---------VPIAIVLKAAGIVSDLEIL-QLVC 274

Query: 208  CYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV----IDGLQ 263
              D  Y+            +   + L E     + T+ Q L++IG   + +    +  LQ
Sbjct: 275  GNDSSYQ------------DIFAVNLEEAAKFKIYTQQQALEYIGTKVKTIRKQKLTALQ 322

Query: 264  SESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILL 323
             E   A+A TVI  ++ V   D  +K   +  M +++   + +  + D+ D + N+ + L
Sbjct: 323  -EGIEAIATTVIA-HLTVEELDFREKALYIAMMTRRVVMAIHNPKMVDDRDYVGNKRLEL 380

Query: 324  PGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIE 383
             G LI++  ++  + +    K  I   ++   +  ++  L +I  V   N +  +  SI 
Sbjct: 381  AGQLISLLFEDLFKKFTSDFKMSIDKVLKKPNRAMEYDALLSIN-VHCNNITSGLNRSIS 439

Query: 384  T---MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VR 439
            T    LK  ++         +RAG T    RL+++  +     +   + F   R  S  R
Sbjct: 440  TGNWSLKRFKM---------ERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRKVSGPR 488

Query: 440  KLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGV 499
             L P  +G LC   TP+GE CGL+ ++     + +  D    I+         L  ++GV
Sbjct: 489  ALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTD-DEEDPIKK--------LCYVLGV 539

Query: 500  GMIPSLPKLVKSGPPAVLSVLLDGRVVGV--IPSSEIEKVVAHLRRLKVSAASVIPDDLE 557
              I SL     +       V L+G +VG    P+  + +     R  KVSA         
Sbjct: 540  EDISSLDS---ATIHESYGVHLNGTLVGTTRFPNKFVTQFRDLRRAGKVSA--------- 587

Query: 558  VGYVPLSLGGAYPGLYLFTSPPKFVRPV----RNISLPSEESQNIELIGP--FEQVFMEI 611
              ++ +        +++ T   +  RP+    +  SL   E     L G   F+  F+++
Sbjct: 588  --FISIYTNSHQQAVHIATDGGRICRPLIVIEKGKSLVKAEHLRDLLNGDLVFDD-FLKL 644

Query: 612  RCPDGGDGGRRN-AFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQC 660
               +  D    N +F A          TH EI P  +L  VA L PY  HNQSPRN YQC
Sbjct: 645  GLVEYLDVNEENDSFIALYEKDITPAMTHLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQC 704

Query: 661  QMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYT 720
             M KQ +G        R D  LY +  PQ P+V+T T      D+ P G NA VAV++Y+
Sbjct: 705  AMGKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIELINYDKLPAGQNATVAVMSYS 764

Query: 721  GYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSL--HSV 778
            GYD+EDA+ILNKSS+DRG    +  +  T  L    N         R +++ K +  H  
Sbjct: 765  GYDIEDALILNKSSIDRGFGRCETRRKTTTILKRYPNHTQDIIGGMRVDENGKPIWQHEA 824

Query: 779  IDSDGLPYVGQMIHPGEPYC--SIYDKTTN---SWRTNSR--------KGSESVFVDYVA 825
            +  DGL  VG  +  G+ Y   SI   T     +  T S+        +G E   VD V 
Sbjct: 825  LGPDGLGEVGMKVSSGQIYINKSIPTNTAEGLEAINTQSQYKETPVMYRGPEPSHVDQVM 884

Query: 826  VDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDL 885
              M  S N      +  R  R P +GDKFSSRHGQKGVC  +    DMPF+   G+ PD+
Sbjct: 885  --MSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGLIVQQEDMPFND-QGINPDI 941

Query: 886  IINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDEL 945
            I+NPH FPSRMT+  ++E ++ K G L+G     T F  S                ++E+
Sbjct: 942  IMNPHGFPSRMTVGKMIELISGKAGVLNGSLEYGTCFGGSK---------------LEEM 986

Query: 946  GEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQIT 1005
             ++L   GFNY G ++LYSG+ G  L   IF GP+YYQ+L+HMV DK   R+ G    +T
Sbjct: 987  SKILVDKGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLT 1046

Query: 1006 RQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFI 1065
            RQP +GR R GG+R GEMERD ++A+GA+ LL +RL   SD    DVC  CG +  + + 
Sbjct: 1047 RQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCDKCGLMGYSGW- 1105

Query: 1066 HPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
                                   C  C++++ +  + +PY  + L  EL +MNI   L++
Sbjct: 1106 -----------------------CTTCRSAENIIKMTIPYAAKLLFQELLSMNIAPRLRM 1142


>gi|366997769|ref|XP_003683621.1| hypothetical protein TPHA_0A01020 [Tetrapisispora phaffii CBS 4417]
 gi|357521916|emb|CCE61187.1| hypothetical protein TPHA_0A01020 [Tetrapisispora phaffii CBS 4417]
          Length = 1142

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 342/1195 (28%), Positives = 548/1195 (45%), Gaps = 180/1195 (15%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
            F  ++ LV+ H++SF+Y +D+ L ++ +                                
Sbjct: 48   FLKVKGLVKQHLDSFNYFVDKDLKKIIEANQVILSDVDPEFYLKYVDIRIGEKSTGSKEK 107

Query: 37   -----HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQ 91
                  CR   ++Y+  +  D+E  Y    + ++ +    G+ P+ML++ +C L GAD +
Sbjct: 108  LVPPHECRLRDMTYSAPIYVDIE--YTRGRNIIMHKDVEIGRMPIMLRSNKCILNGADQK 165

Query: 92   KLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC 151
             +  L E   + GGYFI+NG E+    VIL ++        S  R   E    K++V   
Sbjct: 166  VMAKLNECPLDPGGYFIVNGTEK----VILVQEQL------SKNRIIVEADEKKSIVQAS 215

Query: 152  VRKDQSSVTLKLYYLL-NGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYD 210
            V         K Y +  NG + L      +E  +P+ I+LKA    +DLEI   L C  D
Sbjct: 216  VTSSTHERKSKTYVVTKNGKIYLKHNSIAEE--VPIAIILKACGIVSDLEIM-QLVCGND 272

Query: 211  EKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV----IDGLQSES 266
              Y+            +   I L E   L+++T+ Q L++IG   + +    +  LQ E 
Sbjct: 273  SSYQ------------DIFAINLEEAVKLNISTQQQALEYIGSKVKTIRRQKLSILQ-EG 319

Query: 267  YYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGH 326
              A+A TVI  ++ V   D  +K   +  M +++   +++  + D+ D + N+ + L G 
Sbjct: 320  IEAIATTVIA-HLTVEALDFREKALYIAMMTRRVVMAIENPKMVDDRDYVGNKRLELAGQ 378

Query: 327  LITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETML 386
            LI++  ++  + +    K  I   ++   +  ++  L +I        S  I + +   +
Sbjct: 379  LISLLFEDLFKKFNSDFKASIDKVLKKPNRAMEYDALLSINV-----HSNNITSGLNRAI 433

Query: 387  KTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPES 445
             TG  + +      +RAG T    RL+++  +     +   + F   R  S  R L P  
Sbjct: 434  STGNWSLKRF--KMERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRKVSGPRALQPSQ 489

Query: 446  WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
            +G LC   TP+GE CGL+ ++     + +  D    I+    M        +GV  I   
Sbjct: 490  FGMLCTADTPEGEACGLVKNLALMTHITT-DDEEDPIKKLCYM--------LGVEDIT-- 538

Query: 506  PKLVKSGPPAV-LSVLLDGRVVGV--IPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVP 562
              L+ S    +   V L+G ++G    P + + +     R  +VS            +V 
Sbjct: 539  --LIDSASLHLNYGVHLNGTLIGTTRFPLNFVSQFRQLRRTGRVSE-----------FVS 585

Query: 563  LSLGGAYPGLYLFTSPPKFVRPVRNIS-----LPSEESQNIELIGPFE-QVFMEIRCPDG 616
            +        +++ T   +  RP+  +S     + +E  + + L G  +   F+++   + 
Sbjct: 586  IYTNSHQQAVHIATDGGRICRPLIIVSNGKSHVKAEHLKEL-LEGKLDFDDFLKLGLVEY 644

Query: 617  GDGGRRN-AFPATHE----------EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQ 665
             D    N  F A +E          EI P  +L  VA L PY  HNQSPRN YQC M KQ
Sbjct: 645  LDVNEENDCFIALYEKDLSNRSTHLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQ 704

Query: 666  TMGFSVQALKF-RADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDM 724
             +G ++   +F R D  LY +  PQ P+V+T T      D+ P G NA VAV++Y+GYD+
Sbjct: 705  AIG-AIGYNQFKRIDTLLYLMIYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDI 763

Query: 725  EDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDR--GQKLFRRNKDAKSLHSVIDSD 782
            EDA++LNK+S+DRG    +  +  T  L    N      G      N +    H  +  D
Sbjct: 764  EDALVLNKASIDRGFGRCETRRKTTTVLKRYPNHTQDIIGGMRVDENNNPIWQHEALGPD 823

Query: 783  GLPYVGQMIHPGEPYC--SIYDKTTNSWRTNSRKGSESVFVDYVA--------VDMKNSK 832
            GL  VG  ++ G+ Y   S+    ++S  T+++   +   V Y +        V M  S+
Sbjct: 824  GLGEVGVKVNSGQIYINKSVPTNASDSVLTSTQSQYKETPVVYRSPVPSHIDQVMMSVSE 883

Query: 833  NLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAF 892
            N      +  R  R P +GDKFSSRHGQKGVC  +    DMPF+   G+ PD+I+NPH F
Sbjct: 884  NDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVNHEDMPFND-EGISPDIIMNPHGF 942

Query: 893  PSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTC 952
            PSRMT+  ++E V+ K G L+G     T F  S                ++++ ++L   
Sbjct: 943  PSRMTVGKMIELVSGKAGVLNGSLEYGTCFGGSK---------------LEDMSQILVEN 987

Query: 953  GFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGR 1012
            G+NY G ++LYSGV G  L   IF GP+YYQ+L+HMV DK   R+ G    +TRQP +GR
Sbjct: 988  GYNYSGKDMLYSGVTGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 1047

Query: 1013 KRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAI 1072
             R GG+R GEMERD ++A+GA+ LL +RL   SD    DVC  CG +  + +        
Sbjct: 1048 SRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCHKCGLMGYSGW-------- 1099

Query: 1073 REIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
                            C  C++++ +  + +PY  + L  EL AMNI   L+L D
Sbjct: 1100 ----------------CTTCKSAEFIVKMTIPYAAKLLFQELLAMNIAPRLRLED 1138


>gi|448527137|ref|XP_003869439.1| Ret1 protein [Candida orthopsilosis Co 90-125]
 gi|380353792|emb|CCG23304.1| Ret1 protein [Candida orthopsilosis]
          Length = 1149

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 344/1212 (28%), Positives = 547/1212 (45%), Gaps = 200/1212 (16%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
            F  ++ LV+ H++SF+Y +D  L ++ +                                
Sbjct: 43   FLKIKGLVKQHLDSFNYFVDVDLKKILNANSLVLSDVDPDFYVKYIDIRVGHKSTSPPGT 102

Query: 37   --------HCRQAKISYTGKLMADVEFQYLDAGSPVVRE-RFNFGQFPVMLKTRRCHLQG 87
                     CR   ++Y+  +  DVE+     G  ++R      G+ P+ML++ +C L G
Sbjct: 103  KEVILPPHECRLRDLTYSAPIYVDVEYT---RGRKIIRHYDLEIGRMPIMLRSNKCMLDG 159

Query: 88   ADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAV 147
             D + +  + E   + GGYFI+NG E+V   +++ +Q     ++  +  D ++G    +V
Sbjct: 160  MDDKMMAQVDECPLDPGGYFIVNGTEKV---ILVQEQLSKNRIIVEA--DEKKGIVQASV 214

Query: 148  VIRC-VRKDQSSVTLK--LYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNH 204
                  RK ++ V  K    YL + S+            +P+ IVLKA   T+DLEI   
Sbjct: 215  TSSTHERKSKTYVITKNDKIYLKHNSISED---------IPIVIVLKAAGVTSDLEIL-Q 264

Query: 205  LTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ-------P 257
            L C  D  Y+            +   +   E   L + T+ Q L ++G+  +       P
Sbjct: 265  LVCGSDPNYQ------------DLFVVNFEEAAKLEVFTQQQALLYLGKRVKTIRRAGAP 312

Query: 258  VIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQ 317
             +  LQ E   A+A T+I     V L    +K   +  M +++   + +  + D+ D + 
Sbjct: 313  KLSQLQ-EGIEAIATTIIAHLTVVDLQ-FREKALYMAMMARRVVMAMHNPKMVDDRDYVG 370

Query: 318  NQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQ 377
            N+ + L G L+++  ++  + +    K  I   ++   +  +F  L +I        S  
Sbjct: 371  NKRLELAGQLMSLLFEDLFKKFNSDFKANIDKILKKPSRTSEFDALLSINI-----HSNN 425

Query: 378  IGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS 437
            I   +   + TG  + +      +RAG T    RL+++  +     +   + F   R  S
Sbjct: 426  ITMGLNRAISTGNWSLKRFK--MERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRKVS 481

Query: 438  -VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSI-LRV 495
              R L P  +G LC   TP+GE CGL+ ++     + +  D  G I+   K+ T++    
Sbjct: 482  GPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTD-DEEGPIK---KLCTALGCES 537

Query: 496  LIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRL----KVSAASV 551
            ++G   + S    V+        V L+G ++G   +    K V   RRL    KVSA   
Sbjct: 538  ILG---LDSATLHVEGN----FGVYLNGTLLGA--TRFPVKFVTDFRRLRRAGKVSA--- 585

Query: 552  IPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP---VRNISLPSEESQNIELI-GPFE-- 605
                    +V +        +++ T   +  RP   V N     E +   +L+ G +E  
Sbjct: 586  --------FVSIYTNTHQQAVHIATDGGRICRPLIIVENNKSKVEANHLAKLLNGEWEFD 637

Query: 606  -------QVFMEIRCPDGG-------DGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHN 651
                     ++++   +         D G       TH EI P  +L  VA L PY  HN
Sbjct: 638  DFLKEGLVEYLDVNEENDSLIALYEKDIGENPNATVTHLEIEPFTVLGAVAGLIPYPHHN 697

Query: 652  QSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTN 711
            QSPRN YQC M KQ +G        R D  LY +  PQ P+V+T T      D+ P G N
Sbjct: 698  QSPRNTYQCAMGKQAIGAIAYNQFRRIDTLLYFMVYPQQPMVKTKTIELINYDKLPAGQN 757

Query: 712  AIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKD 771
            A VAV++Y+GYD+EDA++LNKSS+DRG    Q+ +  T+ L    N         R +++
Sbjct: 758  ATVAVMSYSGYDIEDALVLNKSSLDRGFGRCQVVRKNTVQLKKYPNHSKDILSGMRVDEN 817

Query: 772  AKSL--HSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR--------------KG 815
             + +  H  +  DGL  VG  I  G+ + +    T +   +  +              KG
Sbjct: 818  DEPIFPHQALGPDGLGEVGSKIENGQVFANKCVPTNSGDSSLGQPQQVESHREAPLFYKG 877

Query: 816  SESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPF 875
             E  +VD V   M  S N      +  R TR P +GDKFSSRHGQKGVC  +    D+PF
Sbjct: 878  PEPSYVDQVM--MSVSDNDQALIKVLLRQTRRPELGDKFSSRHGQKGVCGIIVQQEDLPF 935

Query: 876  SGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGT 935
            +   G+ PD+I+NPH FPSRMT+  ++E ++ K G L+G     T F  S          
Sbjct: 936  ND-DGISPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGSLEYGTCFGGSK--------- 985

Query: 936  DESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQV 995
                  ++E+ ++L   GF+Y G ++LYSG+ G  L   IF GP+YYQ+L+HMV DK   
Sbjct: 986  ------LEEMSKILVEKGFSYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHA 1039

Query: 996  RSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSL 1055
            R+ G    +TRQP +GR R GG+R GEMERD ++A+GA+ LL +RL   SD    DVC+ 
Sbjct: 1040 RARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCNK 1099

Query: 1056 CGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELA 1115
            CG +   ++                        C  C++S+ +  + +PY  + L  EL 
Sbjct: 1100 CGLMGYNSW------------------------CTTCKSSENIIKMTIPYAAKLLFQELL 1135

Query: 1116 AMNIKITLQLGD 1127
            +MNI   L+LGD
Sbjct: 1136 SMNIAPRLRLGD 1147


>gi|313221111|emb|CBY31939.1| unnamed protein product [Oikopleura dioica]
          Length = 1110

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 343/1197 (28%), Positives = 547/1197 (45%), Gaps = 214/1197 (17%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEM----------------FDH--------------- 37
            F   R LV+ H++SF+Y+L +GL ++                +DH               
Sbjct: 44   FLETRGLVKQHLDSFNYLLTQGLQKIIKANARTDVDQNFFWNYDHIYVDPPDVEYGMRSE 103

Query: 38   ------CRQAKISYTGKLMADVEF----QYLDAGSPVVRERFNFGQFPVMLKTRRCHLQG 87
                  CR   ++Y+  +  DV +    Q   A   V+      G+ P+ML++ RC L  
Sbjct: 104  AITPHECRLRDMTYSAPIKVDVTYVRDNQIRKARGLVI------GRMPIMLRSARCVLAN 157

Query: 88   ADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAV 147
               ++    KE   + GGYF++ G E+V            + M   +  +R     DK  
Sbjct: 158  MSQEQFFKAKECPLDPGGYFVVKGAEKV------------LLMQEQAVSNRILVEKDKTG 205

Query: 148  VIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVL--KALVDTNDLEIFNHL 205
            +   V K +S        L+    ++  +++  +   PV +V+  KAL    D EI   L
Sbjct: 206  MFCAVVKSKSDTANTQTNLIQSKNKI--YVKQNKLREPVNVVVLFKALGIERDQEI-AEL 262

Query: 206  TCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHF----QPVIDG 261
                D        A+ +P         L E Q L + ++ Q ++++ +       P++  
Sbjct: 263  IATEDSTL-----ALLAP--------SLFECQQLEIFSQNQAMKYLEKTIMRIQNPIVSR 309

Query: 262  LQSESYYAVA-----ETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
             Q +S + V      E  + +++   L  N       +    K   ++     +D+ D  
Sbjct: 310  SQMQSRFQVRTPRNREQEVHNWLVSTLLVN-------VPYCYKRRGMIK----ADDRDYY 358

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ I L G LI++  +E  +++  + ++ I  ++E    +     + ++   M K+   
Sbjct: 359  GNKRIQLAGDLISLLFEEHFKNFNDELRRTIGKKLEKKTAQ-----VVDVISSM-KSLQN 412

Query: 377  QIGTSIETMLKTGRLATQT-GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAG-LR 434
            +I  ++E  ++TG    +   +D   R G T    R++F+  I           F   ++
Sbjct: 413  KITLAMEAAIQTGNWNLKRFKMD---RKGITEILNRMSFISIILVGTMTRIKGHFEKTMK 469

Query: 435  TTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILR 494
             T  R L    WG LCP  TP+G  CGL+ +M     V ++ D +            I R
Sbjct: 470  VTGPRALQGSQWGMLCPSDTPEGAQCGLVKNMALLSHVTTFEDDK-----------PIHR 518

Query: 495  VLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVI--PSSEIEKVVAHLRRLKVSAASVI 552
            +LI +G+  +          A   V L+G +VG    P S + + V  +RR     A  +
Sbjct: 519  LLINLGVEETSTLSGYDLHGANYLVFLNGALVGATRNPKS-LTRTVQLIRR-----AGRL 572

Query: 553  PDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP---VRNISLPSEESQNIELIGPFEQVFM 609
            P+     +V + +   +  +YL +   +  RP   V N   P    ++I  +     +  
Sbjct: 573  PE-----FVSVYVSEEHRAVYLASDGGRLTRPCIIVEN-GRPKVTQKHINAL-----LEG 621

Query: 610  EIRCPDGGDGG---------RRNAFPA----------THEEIHPTGMLSVVANLTPYSDH 650
             ++ PD    G           +A  A          TH EI P  +L V A L PY DH
Sbjct: 622  RVKFPDFVKNGLIEYLDVNEENSALIAVYERDITKKHTHLEIEPFALLGVCAGLIPYPDH 681

Query: 651  NQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGT 710
            NQSPRN YQC M KQ MG      + R D  LY+L  PQ P+V+T T    G ++ P G 
Sbjct: 682  NQSPRNTYQCAMGKQAMGTIAMNQRERIDSCLYNLVYPQRPLVKTRTIELIGFEQLPAGQ 741

Query: 711  NAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDR-GQKLFRRN 769
            NA VAV++Y+GYD+EDA++LNK+SVDRG     +Y+ E   L   G  V+   +++    
Sbjct: 742  NATVAVMSYSGYDIEDALVLNKASVDRGYGRCLVYRNEKTQLQRRGTLVETIEERIDGPA 801

Query: 770  KDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNS-RKGSESVFVDYVAVDM 828
             DAKS   +   + L   G ++ PGE    + D+     ++     G+E V +   A   
Sbjct: 802  LDAKSGEKIRADECLDMDG-IVAPGE---RVKDRAPTMAKSQPIHIGTERVMISEDAT-- 855

Query: 829  KNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIIN 888
                   +   + +R TR P +GDKFSSRHGQKGV   + P  +MPF+ + GM PD+I+N
Sbjct: 856  ------WRMVKLSYRQTRRPELGDKFSSRHGQKGVTGLIVPQENMPFNEI-GMCPDVIMN 908

Query: 889  PHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEM 948
            PH +PSRMT+  L+E + +K G+L GKF   T F        G+T  + +++++D     
Sbjct: 909  PHGYPSRMTVGKLMECIGSKAGALSGKFHYGTAFG-------GNTTEEMAQTMLD----- 956

Query: 949  LRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQP 1008
                GFNY+G ++L SG  G  L   IF+GP+YYQ+LRHMV DK   R+TG +  +TRQP
Sbjct: 957  ---YGFNYYGKDLLMSGETGEPLEAYIFMGPIYYQKLRHMVMDKMHARATGKVHNLTRQP 1013

Query: 1009 IKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQ 1068
            ++GR + GG+R GEMERD+LLA+GA+ LL++R    SD +  ++C  CG           
Sbjct: 1014 LEGRAKDGGLRLGEMERDALLAYGASNLLNERFFYSSDKYSVEICGNCG----------- 1062

Query: 1069 KRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
               +    G           C  C+T + M ++ MPY  + L  EL +MNI   +QL
Sbjct: 1063 ---LHGYSGW----------CRVCRTGEHMASINMPYACKLLLQELFSMNIMPRIQL 1106


>gi|50546993|ref|XP_500966.1| YALI0B16258p [Yarrowia lipolytica]
 gi|49646832|emb|CAG83219.1| YALI0B16258p [Yarrowia lipolytica CLIB122]
          Length = 1169

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 349/1228 (28%), Positives = 551/1228 (44%), Gaps = 228/1228 (18%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEM------------------------------FD-- 36
            F  ++ LV+ H++SF+Y +D  L ++                              FD  
Sbjct: 55   FLKVKGLVKQHLDSFNYFVDVDLKKILAANQMVLSDVDPEFYLKYKDIRVGKPGIKFDDK 114

Query: 37   ---------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQG 87
                      CR   ++Y   +  D+E  Y      V++     G+ P+ML++ +CHLQ 
Sbjct: 115  NDDNAIFPHECRLRDMTYAAPIYVDIE--YTKERKIVIQRNLEIGKMPIMLRSSKCHLQD 172

Query: 88   ADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAV 147
               +K+ ++ E   + GGYFI+NG E+V   +++ +Q     ++  +  D ++G    +V
Sbjct: 173  QTEEKMAAMGECPLDPGGYFIVNGTEKV---ILVQEQLSKNRIIVEA--DEKKGVVQASV 227

Query: 148  VIRC-VRKDQSSVTLK--LYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNH 204
                  R+ ++ V  K    YL N S+            +P+ ++LKA     DLEI   
Sbjct: 228  TSSTHERRSKTYVLTKNDKIYLKNNSIVED---------IPIVLILKAAGLVTDLEIMQA 278

Query: 205  LTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQS 264
            +             A  +P+  E   +   E   L + T+ Q L+++G   +        
Sbjct: 279  V-------------AGQNPVYQEIFAVNFEECSKLGVFTQRQALEYLGSKVKTSRRSNVK 325

Query: 265  ESYYAVAETVIRDYIFVHLNDNNDKFN----LLIFMLQKLFSLVDHTSVSDNPDSLQNQE 320
             ++Y      +   I  H++ NN  F      +  M +++   +    + D+ D + N+ 
Sbjct: 326  LTHYQEGLEAVATSIIAHISINNMDFTEKALYIAVMTRRVIMAMADPKMIDDRDYVGNKR 385

Query: 321  ILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGT 380
            + L G L+++      ED                 KKF+    ANI K++ K P++    
Sbjct: 386  LELAGQLLSLLF----EDLF---------------KKFNSDFKANIDKIL-KRPNRASMF 425

Query: 381  SIETMLKTGRLATQTGLDL-------------QQRAGYTVQAERLNFLRFISFFRAVHRG 427
                 L+T R +  +G++               +RAG T    RL+++  +     +   
Sbjct: 426  DALLNLETHRGSITSGMNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRI--S 483

Query: 428  ASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFS 486
            + F   R  S  R L P  +G LC   TP+GE CGL+ ++     + +  D    +R+  
Sbjct: 484  SQFEKSRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTD-DEEAPVRN-- 540

Query: 487  KMRTSILRVLIGVGMIPSL--PKLVKSGPPAVLSVLLDGRVVGV--IPSSEIEKVVAHLR 542
                  L  L+G   I  +   +L   G      V L+G ++G+   P+  +       R
Sbjct: 541  ------LCYLLGAENISVIGGAELHAEGS---FGVYLNGTLIGITKFPTKFVSSFRQFRR 591

Query: 543  RLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNIS--LPSEESQNIEL 600
              KVS            ++ + +   +  +++ T   +  RP+  +    P  + ++++ 
Sbjct: 592  TGKVSE-----------FISIYINRHHAAVHIATDGGRICRPLIIVENEHPRVQVEHLKK 640

Query: 601  IGPFEQVF---MEIRCPDGGDGGRRN-AFPA----------THEEIHPTGMLSVVANLTP 646
            +   E  F   ++    +  D    N +F A          TH EI P  +L  VA L P
Sbjct: 641  LRDGEMTFDDFLKQGLVEYLDVNEENDSFIALYENNINAETTHLEIEPFTVLGAVAGLIP 700

Query: 647  YSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEY 706
            Y  HNQSPRN YQC M KQ +G        R D  LY +  PQ P+V+T T      D+ 
Sbjct: 701  YPHHNQSPRNTYQCAMGKQAIGAIAYNQLNRIDTLLYLMVYPQQPMVKTRTIELIDYDKL 760

Query: 707  PTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDL-----SDDGNKVDR 761
            P G NA VAV++Y+GYD+EDA++LNKSS+DRG    Q+ +  T  L     SD  +++D 
Sbjct: 761  PAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCQVLKKNTTVLKRYAGSDAVDRLD- 819

Query: 762  GQKLFRRN--KDAKSL-------HSVIDSDGLPYVGQMIHPGEPYC----------SIYD 802
            G K+ RR    D  S        H V+  DGL  VG+ +   + Y           S+ +
Sbjct: 820  GVKMERRKCAWDPNSFEEVVTEQHEVLGPDGLGEVGKPVKNSQVYVNRCIPVNNSDSLLN 879

Query: 803  KTTNS---WRTN--SRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSR 857
            ++T+S   +R    + +G E   +D V V + + +    K  +  R TR P +GDKFSSR
Sbjct: 880  QSTSSSTEYREAPVTYRGPEPSIIDKVMVSVTDKELYLIK--VLLRQTRRPELGDKFSSR 937

Query: 858  HGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFM 917
            HGQKGVC  +    DMPFS  +G+ PD+I+NPH FPSRMT+  ++E ++ K G L G   
Sbjct: 938  HGQKGVCGIIVNQEDMPFSD-SGVCPDIIMNPHGFPSRMTVGKMIELISGKAGVLDGSLQ 996

Query: 918  DATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFI 977
              T F        G    D SK LVD         G++Y G ++LYSG  G  L   IF 
Sbjct: 997  YGTCFG-------GSKLEDMSKILVDH--------GYSYSGKDMLYSGTSGECLQAYIFF 1041

Query: 978  GPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLL 1037
            GP+YYQ+L+HMV DK   R  G    +TRQP +GR R GG+R GEMERD ++A+GA+ LL
Sbjct: 1042 GPIYYQKLKHMVMDKMHARPRGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLL 1101

Query: 1038 HDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKG 1097
             +RL   SD   ADVC  CG +    +                        C++CQT+  
Sbjct: 1102 LERLMYSSDAFEADVCQKCGLLGYQGW------------------------CNSCQTTAH 1137

Query: 1098 METVAMPYVFRYLAAELAAMNIKITLQL 1125
            +  + +PY  + L  EL +MNI   L+L
Sbjct: 1138 VVKMTLPYAAKLLFQELVSMNIAPRLKL 1165


>gi|79529842|ref|NP_199327.4| DNA-directed RNA polymerase III subunit C2 [Arabidopsis thaliana]
 gi|332007826|gb|AED95209.1| DNA-directed RNA polymerase III subunit C2 [Arabidopsis thaliana]
          Length = 1161

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 352/1220 (28%), Positives = 549/1220 (45%), Gaps = 195/1220 (15%)

Query: 8    DFEPLRELVRHHIESFDYMLDEGLSEMFDH------------------------------ 37
            +F  +R LV+ H++SF+Y ++ G+ ++                                 
Sbjct: 38   EFLKVRGLVKQHLDSFNYFINVGIHKIVKANSRITSTVDPSIYLRFKKVRVGEPSIINVN 97

Query: 38   ---------CRQAKISYTGKLMADVEFQYLDAGSPVVRERFN--FGQFPVMLKTRRCHLQ 86
                     CR A ++Y   +  ++E+ +   G+     + N   G+ P+ML++ RC L 
Sbjct: 98   TVENINPHMCRLADMTYAAPIFVNIEYVHGSHGNKAKSAKDNVIIGRMPIMLRSCRCVLH 157

Query: 87   GADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKA 146
            G D ++L  L E   + GGYFI+ G E+V   +++ +Q   +S  R      ++G  + +
Sbjct: 158  GKDEEELARLGECPLDPGGYFIIKGTEKV---LLIQEQ---LSKNRIIIDSDKKGNINAS 211

Query: 147  VVIRC-VRKDQSSVTL---KLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIF 202
            V     + K ++ + +   K+Y  L+  V+           +P+ IVLKA+   +D EI 
Sbjct: 212  VTSSTEMTKSKTVIQMEKEKIYLFLHRFVKK----------IPIIIVLKAMGMESDQEIV 261

Query: 203  NHLTCCYDEKYKKEKGAVG-SPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDG 261
                             VG  P  S  +   + E     + T+ Q L ++    + +  G
Sbjct: 262  Q---------------MVGRDPRFSASLLPSIEECVSEGVNTQKQALDYLEAKVKKISYG 306

Query: 262  LQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIF----MLQKLFSLVDHTSVSDNPDSLQ 317
               E     A +++RD    H+   ++ F    F    ML+++   + +    D+ D + 
Sbjct: 307  TPPEKD-GRALSILRDLFLAHVPVPDNNFRQKCFYVGVMLRRMIEAMLNKDAMDDKDYVG 365

Query: 318  NQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENN---GKKFDFFNLANIKKVMEKNP 374
            N+ + L G LI++  ++  +  L +  K + D I N      +FDF       + + K+ 
Sbjct: 366  NKRLELSGQLISLLFEDLFKTMLSEAIKNV-DHILNKPIRASRFDF------SQCLNKDS 418

Query: 375  SKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLR 434
               I   +E  L TG    +       R G T    RL+F+  + F   +     F   R
Sbjct: 419  RYSISLGLERTLSTGNFDIKRFR--MHRKGMTQVLTRLSFIGSMGFITKI--SPQFEKSR 474

Query: 435  TTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
              S  R L P  WG LCP  TP+GE CGL+ ++     V +  +    +    K+  + L
Sbjct: 475  KVSGPRSLQPSQWGMLCPCDTPEGESCGLVKNLALMTHVTTDEEEGPLVAMCYKLGVTDL 534

Query: 494  RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSA----- 548
             VL       S  +L     P    V+L+G ++G    S  +     LRRL+ +      
Sbjct: 535  EVL-------SAEEL---HTPDSFLVILNGLILG--KHSRPQYFANSLRRLRRAGKIGEF 582

Query: 549  ASVIPDDLE--------VGYVPLSLGGAYPGLY---------LFTSPPKFVRPVRN--IS 589
             SV  ++ +        VG V   L  A  G+          L      F   +R+  I 
Sbjct: 583  VSVFTNEKQHCVYVASDVGRVCRPLVIADKGISRVKQHHMKELQDGVRTFDDFIRDGLIE 642

Query: 590  LPSEESQNIELIGPFEQVFMEIRCPDG----GDGGRRNAFPATHEEIHPTGMLSVVANLT 645
                  +N  LI  +E         DG     +G        TH EI P  +L VVA L 
Sbjct: 643  YLDVNEENNALIALYES--------DGTTELDEGAEAAKADTTHIEIEPFTILGVVAGLI 694

Query: 646  PYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDE 705
            PY  HNQSPRN YQC M KQ MG        R D  LY L  PQ P++ T T    G D+
Sbjct: 695  PYPHHNQSPRNTYQCAMGKQAMGNIAYNQLNRMDTLLYLLVYPQRPLLTTRTIELVGYDK 754

Query: 706  YPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD--DGNKVDRGQ 763
               G NA VAV++++GYD+EDA+++NKSS+DRG     I   + + +S   D    DR  
Sbjct: 755  LGAGQNATVAVMSFSGYDIEDAIVMNKSSLDRGFGRC-IVMKKIVAMSQKYDNCTADRIL 813

Query: 764  KLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCS------IYDKTTNSWRTNSRKGSE 817
               R   DA+ +  ++D DGL   G++I P + Y +         K T++   +  + + 
Sbjct: 814  IPQRTGPDAEKMQ-ILDDDGLATPGEIIRPNDIYINKQVPVDTVTKFTSALSDSQYRPAR 872

Query: 818  SVF---------VDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLW 868
              F         VD VA+       L  K  IR  HTR P +GDKFSSRHGQKGVC  + 
Sbjct: 873  EYFKGPEGETQVVDRVALCSDKKGQLCIKYIIR--HTRRPELGDKFSSRHGQKGVCGIII 930

Query: 869  PDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKK 928
               D PFS + G+ PDLI+NPH FPSRMT+  ++E + +K G   G+F   + F    + 
Sbjct: 931  QQEDFPFSEL-GICPDLIMNPHGFPSRMTVGKMIELLGSKAGVSCGRFHYGSAFGE--RS 987

Query: 929  TNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHM 988
             + D     S +LV++        GF+Y G ++LYSG+ G  +   IF+GP+YYQ+L+HM
Sbjct: 988  GHADKVETISATLVEK--------GFSYSGKDLLYSGISGEPVEAYIFMGPIYYQKLKHM 1039

Query: 989  VSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYH 1048
            V DK   R +G    +TRQP +G+ + GG+R GEMERD L+A+GA+ L+++RL   SD  
Sbjct: 1040 VLDKMHARGSGPRVMMTRQPTEGKSKNGGLRVGEMERDCLIAYGASMLIYERLMISSDPF 1099

Query: 1049 VADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFR 1108
               VC  CG  L   + +  K+A+                C  C+    + T+ +PY  +
Sbjct: 1100 EVQVCRACG--LLGYYNYKLKKAV----------------CTTCKNGDNIATMKLPYACK 1141

Query: 1109 YLAAELAAMNIKITLQLGDG 1128
             L  EL +MN+   L+L + 
Sbjct: 1142 LLFQELQSMNVVPRLKLTEA 1161


>gi|255713708|ref|XP_002553136.1| KLTH0D09812p [Lachancea thermotolerans]
 gi|238934516|emb|CAR22698.1| KLTH0D09812p [Lachancea thermotolerans CBS 6340]
          Length = 1144

 Score =  411 bits (1057), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 343/1195 (28%), Positives = 539/1195 (45%), Gaps = 179/1195 (14%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
            F  ++ LV+ H++SF+Y +D  L ++                                  
Sbjct: 49   FLKVKGLVKQHLDSFNYFVDVDLKKIIKANQLILSDVDPEFYLKYVDIRVGHRSTSSSKD 108

Query: 37   ------HCRQAKISYTGKLMADVEFQYLDAGSPVVRER-FNFGQFPVMLKTRRCHLQGAD 89
                   CR   ++Y+  +  D+E+     G  ++  R    G+ P+ML++ +C L GA 
Sbjct: 109  YIVPPHECRLRDMTYSAPVYVDIEYT---RGRNIIMHRDVEIGRMPIMLRSNKCILNGAS 165

Query: 90   SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
             + +  + E   + GGYFI+NG E+V    IL ++        S  R   E    KA+V 
Sbjct: 166  EKDMAKINECPLDPGGYFIVNGTEKV----ILVQEQL------SKNRIIVEADEKKAIVQ 215

Query: 150  RCVRKDQSSVTLKLYYLL-NGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
              V         K Y +  N  + L      +E  +P+ +VLKA    +DLEI   L C 
Sbjct: 216  ASVTSSTHERKSKTYVITKNDKIYLKHNSIAEE--VPIVLVLKACGIVSDLEIM-QLVCG 272

Query: 209  YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV----IDGLQS 264
             D  Y+            +   +   EV  + + T+ Q L++IG   + V    +  LQ 
Sbjct: 273  NDSSYQ------------DIFAVNFEEVAKMKIYTQQQALEYIGSKVKTVRRQKLSTLQ- 319

Query: 265  ESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLP 324
            E   A+A TVI  ++ V   D  +K   +  M +++   + +  + D+ D + N+ + L 
Sbjct: 320  EGIEAIATTVIA-HLTVEALDFREKALYIAVMTRRVVMAMHNPKMVDDRDYVGNKRLELA 378

Query: 325  GHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIET 384
            G L+++  ++  + +    K  I   ++   +  ++  L +I        S  I + +  
Sbjct: 379  GQLMSLLFEDLFKKFNNDFKANIDKVLKKPNRAMEYDALLSINV-----HSNNISSGLNR 433

Query: 385  MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLP 443
             + TG  + +      +RAG T    RL+++  +     +   + F   R  S  R L P
Sbjct: 434  AISTGNWSLKRFK--MERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRKVSGPRALQP 489

Query: 444  ESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP 503
              +G LC   TP+GE CGL+ ++     + +         D  +     L  L+GV  I 
Sbjct: 490  SQFGMLCTSDTPEGEACGLVKNLALMTHITT---------DDEEEPIKKLCFLLGVECI- 539

Query: 504  SLPKLVKSGPPAV-LSVLLDGRVVGVI--PSSEIEKVVAHLRRLKVSAASVIPDDLEVGY 560
                +V S    +   V L+G +VGVI  P+    K V+H R L+ S            +
Sbjct: 540  ---NVVDSDSLHLNYCVYLNGTIVGVIRFPT----KFVSHFRNLRRSGKVS-------EF 585

Query: 561  VPLSLGGAYPGLYLFTSPPKFVRPVRNI----SLPSEESQNIELIGPFE-QVFMEIRCPD 615
            + +        +++ T   +  RP+  +    SL + +     L G  +   F+++   +
Sbjct: 586  ISIYTNSHQKAVHIATDGGRICRPLIIVNEGKSLVTAQHLRQLLDGHLQFDDFLKLGLVE 645

Query: 616  GGDGGRRN-AFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAK 664
              D    N +F A          TH EI P  +L  VA L PY  HNQSPRN YQC M K
Sbjct: 646  YLDVNEENDSFIALYERDLEPRITHLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGK 705

Query: 665  QTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDM 724
            Q +G        R D  LY +  PQ P+V+T T      D+ P G NA VAV++Y+GYD+
Sbjct: 706  QAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDI 765

Query: 725  EDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSL--HSVIDSD 782
            EDA++LNKSS+DRG    +  +  T  L    N         R ++  + +  H  +  D
Sbjct: 766  EDALVLNKSSIDRGFGRCETRRKLTTVLKRYPNHTQDMVGGMRVDESGEPIWQHKPLGPD 825

Query: 783  GLPYVGQMIHPGEPYC--SIYDKTTNSWRTNSRKGSESVFVDYVA--------VDMKNSK 832
            GL  VG  +  G+ Y   S+    ++S  T S+       V Y A        V M  S+
Sbjct: 826  GLGEVGMKVESGQIYVNKSVPTNASDSVLTQSQAQYRETPVVYRAPEPSHIDQVMMSVSE 885

Query: 833  NLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAF 892
            N      +  R  R P +GDKFSSRHGQKGVC  +    D+PF+   G+ PD+I+NPH F
Sbjct: 886  NDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVNHEDLPFND-QGVVPDIIMNPHGF 944

Query: 893  PSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTC 952
            PSRMT+  ++E ++ K G L+G     T F  S                ++ + ++L   
Sbjct: 945  PSRMTVGKMIELISGKAGVLNGSLEYGTCFGGSK---------------LENMSQILVNH 989

Query: 953  GFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGR 1012
            GFNY G ++LYSG+ G  L   IF GP+YYQ+L+HMV DK   R+ G    +TRQP +GR
Sbjct: 990  GFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 1049

Query: 1013 KRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAI 1072
             R GG+R GEMERD ++A+GA+ LL +RL   SD    DVC+ CG +  + +        
Sbjct: 1050 SRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCNKCGLMGYSGW-------- 1101

Query: 1073 REIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
                            C +C+ ++ +  + +PY  + L  EL +MNI   L+L D
Sbjct: 1102 ----------------CTSCKGAENVIKMTIPYAAKLLFQELLSMNIAPRLKLED 1140


>gi|395327723|gb|EJF60120.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Dichomitus squalens LYAD-421 SS1]
          Length = 1142

 Score =  410 bits (1055), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 343/1212 (28%), Positives = 525/1212 (43%), Gaps = 201/1212 (16%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
            F  ++ LV+ HI+SF+Y +D  +  +                                  
Sbjct: 40   FLKVKGLVKQHIDSFNYFVDVDIKNILKANNKVTSDVDPRFWLKYTDIVVGFPDRTDADA 99

Query: 37   --------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGA 88
                     CR    +Y+  ++  V  QY    + V R   N G+ P+ML++ +C L G 
Sbjct: 100  IDKSVTPHECRLRDTTYSAPIL--VTIQYTRGKTVVRRANVNIGRLPIMLRSNKCVLTGR 157

Query: 89   DSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVV 148
            +  +L  + E   + GGYFI+ G E+V    IL ++    + +           T   V 
Sbjct: 158  NEAQLARMTECPLDPGGYFIVKGTEKV----ILVQEQLSKNRIIVEIDP-----TKGVVQ 208

Query: 149  IRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--------LPVGIVLKALVDTNDLE 200
              C       +  K Y             +GK YL        +P+ I LKAL   +D E
Sbjct: 209  ASCTSSTHGGLKSKTYVATK---------KGKIYLRHNSIHEDVPIAIALKALGIQSDKE 259

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQP--V 258
            I   LT    E YK    +  SP + E  K        L + TR Q L+ IG   +    
Sbjct: 260  IL-LLTAGNHEAYK----SAFSPNLEEAAK--------LGVFTRHQALEWIGSRVKVNRR 306

Query: 259  IDGLQSESYYAVAE---TVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
            + G +  S+    E   T++  ++ VH  D   K   +  M +++   +D   + D+ D 
Sbjct: 307  VVGPRRPSWEEALEALATIVLAHVPVHGLDFRPKAVFVATMTRRVLMAMDDEKMVDDRDY 366

Query: 316  LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGK--KFDFFNLANIKKVMEKN 373
            + N+ + L G L+ +  ++  + +    K  I   ++   +  +FD FN    +      
Sbjct: 367  VGNKRLELAGQLLALLFEDLFKTFNANLKAAIDKVLKKPSRTSEFDAFNTMQFQ------ 420

Query: 374  PSKQIGTSIETMLKTGRLATQT-GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAG 432
                I       + TG  + +   +D   RAG T    RL+F+  +     +   + F  
Sbjct: 421  -GDHITAGFVRAISTGNWSLKRFKMD---RAGVTHVLSRLSFISALGMMTRI--SSQFEK 474

Query: 433  LRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS 491
             R  S  R L P  WG LCP  TP+GE CGL+ ++     + +  +    IR        
Sbjct: 475  TRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVEEEPIIR-------- 526

Query: 492  ILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV 551
             +  ++GV  I SL    +   P    V ++G ++G+  +    + V++ RRL+ +    
Sbjct: 527  -IAFMLGVEDI-SLATGAEIYGPHTFVVNVNGSIIGL--TRYPARFVSNFRRLRRAGRFS 582

Query: 552  IPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNIS--LPSEESQNIELIGPFEQVFM 609
                    +V + +   +  + + +   +  RP+  +    P   S++I  +   +  F 
Sbjct: 583  -------EFVSVYINHHHRTVLIASDGGRICRPMIIVENGRPKVTSEHIAQLKQGQLTFD 635

Query: 610  E------IRCPDGGDGG-------RRNAFPAT-HEEIHPTGMLSVVANLTPYSDHNQSPR 655
            +      +   D  +          ++  P T H EI P  +L  VA L PY  HNQSPR
Sbjct: 636  DFLRKGLVEYLDVNEENDSYIALYEKDIVPGTTHLEIEPFTLLGAVAGLIPYPHHNQSPR 695

Query: 656  NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
            N YQC M KQ +G        R D  LY    PQ P+V+T T    G D  P G NA VA
Sbjct: 696  NTYQCAMGKQAIGAIGYNQLNRIDTLLYLSVYPQQPMVKTKTIELIGYDRLPAGQNATVA 755

Query: 716  VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR-GQKLFRRNKDAK 773
            V++Y+GYD+EDA+ILNK+S+DRG    Q+ +     +    N   DR        N   +
Sbjct: 756  VMSYSGYDIEDALILNKASLDRGYGRCQVLRKNATLIRKYPNGTFDRLADAPLDENGQVQ 815

Query: 774  SLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVF------------- 820
              + ++ +DGL  VG+ + PG+ Y  I  +T  +   NS  G  +               
Sbjct: 816  KKYDIVQTDGLAGVGERVDPGDVY--INKQTPTNANDNSFTGQAATVPYKNTPMTYKSPV 873

Query: 821  ---VDYVAV-DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS 876
               +D V V D +N + L     +  R TR P +GDKFSSRHGQKGVC  +    DMPF+
Sbjct: 874  AGQIDKVMVTDTENDQTL---IKVLIRQTRRPELGDKFSSRHGQKGVCGLIVNQEDMPFN 930

Query: 877  GVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTD 936
               G+ PD I+NPH FPSRMT+  ++E +A K G L GK    T F  S           
Sbjct: 931  D-QGIVPDTIMNPHGFPSRMTVGKMIELLAGKAGVLAGKLQYGTAFGGSK---------- 979

Query: 937  ESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVR 996
                 V+++  +L   GF+Y G ++L SG+ G  L   ++ GP+YYQ+L+HMV DK   R
Sbjct: 980  -----VEDMSRILVENGFSYAGKDMLTSGITGEPLEAYVYFGPIYYQKLKHMVMDKMHAR 1034

Query: 997  STGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLC 1056
            + G    +TRQP +GR R GG+R GEMERD L+ +GA  LL +RL   SD    D C  C
Sbjct: 1035 ARGPRATLTRQPTEGRSREGGLRLGEMERDCLIGYGATQLLLERLMISSDQFQVDACEEC 1094

Query: 1057 GSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAA 1116
            G +    +                        C  C++SK M  + +PY  + L  EL A
Sbjct: 1095 GLLGYNGW------------------------CPYCKSSKKMAQLTIPYAAKLLFQELMA 1130

Query: 1117 MNIKITLQLGDG 1128
            MN+   L L D 
Sbjct: 1131 MNVVPRLVLDDA 1142


>gi|392577194|gb|EIW70323.1| hypothetical protein TREMEDRAFT_29095 [Tremella mesenterica DSM 1558]
          Length = 1128

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 325/1139 (28%), Positives = 509/1139 (44%), Gaps = 159/1139 (13%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR   ISY  ++  D+E+ Y D      ++    G+ PVML++  CHL+G   ++L  + 
Sbjct: 100  CRLRDISYAAEIRVDIEYTYEDKLKK--QKGILIGKLPVMLRSDLCHLKGKSERELARMG 157

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            E   + GGYF++ G E+V    IL ++    + +    RD ++G    AV+  C      
Sbjct: 158  ECPKDPGGYFVVKGTEKV----ILVQEQLSKNRI-IVMRDPKDG----AVIAECTSSTHD 208

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
             V     Y++  + RL       + L+P+ + +KA+  T D EI   L C  DE+Y++  
Sbjct: 209  RVVKT--YVITKNKRLYLRHNSFKELIPIVVAMKAMGVTADKEII-QLICGSDERYQEAF 265

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIG-------------EHFQPVIDGLQS 264
            G              L E   L + T  QC + IG             +   P    +Q+
Sbjct: 266  GPS------------LEEASRLKVYTAKQCAEWIGLRVSPGQEKEDRGQKLAPSEVAMQA 313

Query: 265  ESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLP 324
             +   +   ++R+  F        K   L  M +++        + D+ D + N+ + L 
Sbjct: 314  LAAMVLGHVLVRNMFF------RPKCIYLATMARRVLMASIDEKMVDDRDYVGNKRLELA 367

Query: 325  GHLITIYLKEKLE----DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGT 380
            G L+++  ++  +    D  R+  K++  E  N     D  N      ++ +N    I +
Sbjct: 368  GQLLSLLFEDSFKTYNSDLRRRMDKIL--EKPNRATPLDASN------ILAQN-GDSITS 418

Query: 381  SIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VR 439
            +    + TG  + +      +RAG T    RL+F+  +     +   + F   R  S  R
Sbjct: 419  AFVRSISTGNWSLKRFH--VERAGVTHVLSRLSFIAALGMMTRI--SSQFEKTRKVSGPR 474

Query: 440  KLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFS-KMRTSILRVLIG 498
             L P  WG LCP  TP+GE CGL+ ++     + +     G + D++       +    G
Sbjct: 475  ALQPSQWGVLCPSDTPEGEACGLVKNLALMTHITTDV-PEGPLVDYAFTYGAQDINTFTG 533

Query: 499  VGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEV 558
            VGM              V  + ++G ++G+  ++  +K V   R+L+ +A          
Sbjct: 534  VGMYGR----------GVYLIQINGSLIGL--TNHPKKFVQTWRKLRRAARFS------- 574

Query: 559  GYVPLSLGGAYPGLYLFTSPPKFVRPVRNIS--LPSEESQNIELIGP----FEQVFMEIR 612
             +V + +   +  +Y+ +   +  RP+  +    P   S++I L+      F+  F+   
Sbjct: 575  EFVSIYMNHHHKIIYIASDGGRICRPMIIVENGRPRVTSEHIRLLKEGKVTFDH-FLRSG 633

Query: 613  CPDGGDGGRRN-----------AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQ 661
              +  D    N               TH EI P  +L  VA L PY  HNQSPRN YQC 
Sbjct: 634  LVEYLDVNEENDSLIACYEHEIEEGTTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCA 693

Query: 662  MAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTG 721
            M KQ +G        R D  LY +  PQ P+V+T T      D+ P G NA VAV++++G
Sbjct: 694  MGKQAIGAIGYNQLNRIDTLLYLMTYPQQPMVKTKTIELIEYDKLPAGQNATVAVMSFSG 753

Query: 722  YDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDS 781
            YD+EDA+ILNK+SVDRG     + + +TI +    N               ++  SV  +
Sbjct: 754  YDIEDALILNKASVDRGFGRCHVLKKQTIPMRHFQNGTSERTAYPSDPLRPEAYASVDKA 813

Query: 782  DGLPYVGQMIHPGEPYCSIYDKTTNSWRTN------------SRKGSESVFVDYVAVDMK 829
            DG+   G  ++ G+    ++ +T    R              + K  E V +D V +   
Sbjct: 814  DGVTSPGSTVYQGD--VLVHRETPIDTRGPMTQAAVFKATPITHKTPEPVQIDKVMLTEG 871

Query: 830  NSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINP 889
                L     I  R TR P +GDKFSSRHGQKGVC  + P  DMPF+   G+ PD+I+NP
Sbjct: 872  EDSPL---LKILTRQTRQPELGDKFSSRHGQKGVCGLIVPQTDMPFND-QGICPDIIMNP 927

Query: 890  HAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEML 949
            H FPSRMT+  ++E +A K G L G+    T F  S                V+++  +L
Sbjct: 928  HGFPSRMTVGKMIELLAGKAGVLAGQLQYGTAFGGSK---------------VEDMSRIL 972

Query: 950  RTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPI 1009
               GF+Y G ++L SG+ G  L   ++ GP+YYQ+L+HMV DK   R TG    +TRQP 
Sbjct: 973  IENGFSYAGKDMLTSGITGEPLEAYVYFGPIYYQKLKHMVMDKMHARPTGPRANLTRQPT 1032

Query: 1010 KGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQK 1069
            +GR + GG+R GEMERD L+ +GA  LL +RL   SD     VC  CG +    +     
Sbjct: 1033 EGRSKDGGLRLGEMERDCLIGYGATQLLLERLMISSDAFETQVCETCGLLGYNQW----- 1087

Query: 1070 RAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGDG 1128
                               C  C+T KG+  + +PY  + L  EL  MNI   L + D 
Sbjct: 1088 -------------------CPKCKTGKGIVKITLPYAAKLLIQELMGMNILPKLCMEDA 1127


>gi|91082339|ref|XP_966549.1| PREDICTED: similar to RNA polymerase III 128kD subunit CG8344-PA
            [Tribolium castaneum]
 gi|270007487|gb|EFA03935.1| hypothetical protein TcasGA2_TC014075 [Tribolium castaneum]
          Length = 1122

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 346/1206 (28%), Positives = 528/1206 (43%), Gaps = 203/1206 (16%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
            F  ++ LV+ HI+SF+Y ++  + ++ +                                
Sbjct: 26   FLKVKGLVKQHIDSFNYFINVDIKKIVEANNKLVCDADPLFYVKYTNVYVGRPDVDEGFN 85

Query: 37   --------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGA 88
                     CR   ++Y+  +  D+E  Y      V +     G+ P+ML++  C L   
Sbjct: 86   ISKPTTPHECRLRDMTYSAPISVDIE--YTRGTQRVSKAGLMIGRMPIMLRSSNCVLTNK 143

Query: 89   DSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVV 148
               +L  + E   + GGYF++ G E+V   +++ +Q   +S  R    + + G       
Sbjct: 144  SEYELAKMNECPLDPGGYFVVKGQEKV---ILIQEQ---LSKNRMIVEESKFGVQCAVTS 197

Query: 149  IRCVRKDQSSVTLKL--YYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLT 206
                +K +++V  K   YYL + S+           L+PV I+ KAL  T+D EI     
Sbjct: 198  STHEKKSRTNVVCKANKYYLGHNSL---------TDLVPVSIIFKALDVTSDKEICE--- 245

Query: 207  CCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHF---QPVIDGLQ 263
                         +G   +S ++   L E   L + T+L  L+HIG      + V    +
Sbjct: 246  ------------LIGVEDIS-KLTPTLEECHTLKIYTQLGALKHIGSKLVAKRYVTSASK 292

Query: 264  SESYYAVAETVIRDYIFVHLNDNNDKFNL----LIFMLQKLFSLVDHTSVSDNPDSLQNQ 319
             ++    A  V+   +  H+   N  F +    L  M++++          D+ D   N+
Sbjct: 293  MKTPVDEARDVLATTVLAHVPVENYNFRMKAIYLGVMVKRVIEAQSDKKFMDDKDYYGNK 352

Query: 320  EILLPGHLITIYLKEKLEDWLRKGKKLIQDEIEN-NGKKFDFFNLANIKKVMEKNPSKQI 378
             + L G L+++  ++  + +  + K + +  I      +FD         V++   S  I
Sbjct: 353  RLELAGSLLSLMFEDVFKRFNWELKSIAEKTIPKIRATQFD---------VVKYMRSDLI 403

Query: 379  GTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS- 437
               +   + TG    +      +R G T    RL+++  +     V+  + F   R  S 
Sbjct: 404  TNCLVYAISTGNWTIKRFR--MERLGVTQVLSRLSYISALGMMTRVN--SQFEKTRKVSG 459

Query: 438  VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLI 497
             R L P  WG LCP  TP+GE CGL+ ++     + +  D    IR  +     ++ + +
Sbjct: 460  PRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVDEYPLIRLANN--AGVVDINM 517

Query: 498  GVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLE 557
              GM            P    V L+G ++G I     +K++   R L+ S        L 
Sbjct: 518  SSGM--------SIHSPETFFVFLNGNILGTI--RNYKKLIHTFRMLRRSG-------LI 560

Query: 558  VGYVPLSLGGAYPGLYLFTSPPKFVRPV----RNISLPSEESQNIEL---IGPFEQVFME 610
             GYV +     +  +Y+ +   +  RP     R   L ++ +  IEL   I  FE  F+ 
Sbjct: 561  SGYVSIYPNFLHRCIYISSDGGRLCRPYIIVERGRPLVTQ-NHIIELEKGIRSFED-FLH 618

Query: 611  IRCPDGGDGGRRN-AFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQ 659
                +  D    N +F A          TH EI    +L V A L PY  HNQSPRN YQ
Sbjct: 619  DGLIEFLDVNEENDSFIACYEKDITDLTTHLEIATFTLLGVCAGLVPYPHHNQSPRNTYQ 678

Query: 660  CQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAY 719
            C M KQ MG      K R D  LY L  PQ P+V+T +      D+ P G NA +AV++Y
Sbjct: 679  CAMGKQAMGTIGYNQKNRMDTLLYSLVYPQAPMVKTKSIELTNFDKLPAGQNATIAVMSY 738

Query: 720  TGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DRGQ-KLFRRNKDAKSL-H 776
            +GYD+EDA+I+NK+S+DRG     +Y+     +    N+  DR Q  L     +A    H
Sbjct: 739  SGYDIEDALIINKASIDRGFGRCLVYKNSKCVMKRYANQTFDRIQGPLIDTTTNAPMWKH 798

Query: 777  SVIDSDGLPYVGQMIH----------------PGEPYCSI-YDKTTNSWRTNSRKGSESV 819
            +V+D DG+   G+ +                 PG    S+ Y  T   +R N     E V
Sbjct: 799  AVLDMDGIVAPGESVDNKQVLVNKSVPTVSAVPGSQTTSVEYKDTPICYRNNEPSYIEKV 858

Query: 820  FVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVT 879
             V     D    K       I  R TR P IGDKFSSRHGQKGV   +    DMPF+   
Sbjct: 859  LVSTNEEDTTIIK-------ILLRQTRRPEIGDKFSSRHGQKGVVGLVVEQEDMPFNEY- 910

Query: 880  GMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESK 939
            G+ PD+I+NPH +PSRMT+  L+E +A K G + GKF   T F  S              
Sbjct: 911  GICPDIIMNPHGYPSRMTVGKLIELLAGKAGLVEGKFHYGTAFGGSK------------- 957

Query: 940  SLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTG 999
              V+++ E L   GFNY G +  YSG+ G  L   I+ GPVYYQ+L+HMV DK   R  G
Sbjct: 958  --VNDVCEELAKHGFNYQGKDFFYSGITGEPLEAYIYSGPVYYQKLKHMVQDKIHARGRG 1015

Query: 1000 TMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSV 1059
                +TRQP +GR R GG+R GEMERD L+ +GA+ +L +RL   SD    DVC+LCG +
Sbjct: 1016 PRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMMLIERLMVSSDQCEVDVCNLCGRL 1075

Query: 1060 LTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
                +                        C++C++S+ + ++ MPY  + L  EL AMNI
Sbjct: 1076 GYCGW------------------------CNSCKSSREVSSITMPYACKLLLTELQAMNI 1111

Query: 1120 KITLQL 1125
               L L
Sbjct: 1112 TARLTL 1117


>gi|195024375|ref|XP_001985862.1| GH20856 [Drosophila grimshawi]
 gi|193901862|gb|EDW00729.1| GH20856 [Drosophila grimshawi]
          Length = 1137

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 333/1146 (29%), Positives = 511/1146 (44%), Gaps = 191/1146 (16%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR    +Y+  +  D+E  Y      + R     G+ P+ML+   C L G    +L  L 
Sbjct: 110  CRLRDTTYSAPISVDIE--YTRGTQRIKRNNLLIGRMPLMLRCSNCVLTGKSEFELSKLN 167

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC----VR 153
            E   + GGYF++ G E+V   +++ +Q     M+   F            V++C      
Sbjct: 168  ECPLDPGGYFVVRGQEKV---ILIQEQLSWNKMLTEDFNG----------VVQCQVTSST 214

Query: 154  KDQSSVTLKL-----YYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
             ++ S TL L     YYL + S+            +P+ ++ KAL   +D EI  H+   
Sbjct: 215  HEKKSRTLVLSKHGKYYLKHNSMTDD---------IPIVVIFKALGVVSDQEIMTHIGL- 264

Query: 209  YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIG-----EHFQPVIDGLQ 263
             D + +   GA             L E  +L + T+ + L ++G     + FQ   +   
Sbjct: 265  -DARSQNRFGAS------------LLEAFNLKVFTQQRALDYMGSKLVVKRFQSATNKTP 311

Query: 264  SESYYAVAETVIRDYIFVHLNDNNDKFNL----LIFMLQKLFSLVDHTSVSDNPDSLQNQ 319
            SE     A  ++   I  H+  +N  F +    +  M++++ +     ++ D+ D   N+
Sbjct: 312  SEE----ARELLLTTILAHVPVDNFNFQMKAIYVSLMVRRVMAAELDKTLFDDRDYYGNK 367

Query: 320  EILLPGHLITIYLKE--KLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQ 377
             + L G L+++  ++  K  +W     K+I D+     K   F        V++   + Q
Sbjct: 368  RLELAGSLMSLMFEDLFKRMNW---ELKMIADKNIPKVKAAQF-------DVVKHMRAAQ 417

Query: 378  IGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS 437
            I   +E+ + +G    +      +RAG T    RL+++  +     V+  + F   R  S
Sbjct: 418  ITVGLESAISSGNWTIKRFK--MERAGVTQVLSRLSYISALGMMTRVN--SQFEKTRKVS 473

Query: 438  -VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R L P  WG LCP  TP+GE CGL+ ++     + +  D R  +          +R +
Sbjct: 474  GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVDERPVMTLAYNAGVEDIREV 533

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV-IPSSEIEKVVAHLRRLKVSAASVIPDD 555
             G  M            P V  V ++G V+G+ I    + + + ++RR     +      
Sbjct: 534  SGNPM----------NNPHVFLVFINGNVLGLTINQKHLVRNLRYMRRKGRMGS------ 577

Query: 556  LEVGYVPLSLGGAYPGLYLFTSPPKFVRP---VRNISLPSEESQNIELIGPFEQV--FME 610
                +V +        +++ T   +  RP   V N+    E+    EL+    +   F+ 
Sbjct: 578  ----FVSIHTSYTQRCIFIHTDGGRLCRPYIIVDNMRPLVEQRHLDELLRGIRKFDDFLH 633

Query: 611  IRCPDGGDGGRRN-AFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQ 659
                +  D    N +F A          TH EI P  +L V A L PY  HNQSPRN YQ
Sbjct: 634  DGLIEYLDVNEENDSFIAWNEEHIEPLTTHLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQ 693

Query: 660  CQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAY 719
            C M KQ MG      K R D  +Y+L  PQ P+V++ T      D+ P G NA VAV++Y
Sbjct: 694  CAMGKQAMGMIGYNQKNRIDSLMYNLVYPQAPMVKSRTIELTNFDKLPAGQNATVAVMSY 753

Query: 720  TGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DRGQKLFRRNKDAKSL--H 776
            +GYD+EDA+ILNK+S+DRG     +Y+     +    N+  DR     +     K +  H
Sbjct: 754  SGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDRIMGPVKDALTNKVIFKH 813

Query: 777  SVIDSDGLPYVGQMIH-----------------------PGEPYCSIYDKTTNSWRTNSR 813
             V+D+DG+   G+M+                        P  PY ++           S 
Sbjct: 814  DVLDTDGIVAPGEMVQNKQIMINKEMPAVTSINPLEGQSPQVPYTAV---------PISY 864

Query: 814  KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDM 873
            KG E  +++ V V   + ++   K  I  R TR P IGDKFSSRHGQKGV   +    DM
Sbjct: 865  KGPEPSYIERVMVSANSEEDFLIK--ILLRQTRIPEIGDKFSSRHGQKGVTGLIVDQEDM 922

Query: 874  PFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDT 933
            PF+   G+ PD+I+NPH FPSRMT+   LE +  K G L GKF   T F  S        
Sbjct: 923  PFNDY-GICPDMIMNPHGFPSRMTVGKTLELLGGKAGVLEGKFHYGTAFGGS-------- 973

Query: 934  GTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKF 993
                     D   E++R  GFNY G +  YSG+ G  L   I+ GPVYYQ+L+HMV DK 
Sbjct: 974  ------KAADVQAELVRH-GFNYMGKDFFYSGITGGPLEAYIYSGPVYYQKLKHMVQDKM 1026

Query: 994  QVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVC 1053
              R+ G    +TRQP +GR R GG+R GEMERD L+++GA+ L+ +RL   SD    DVC
Sbjct: 1027 HARARGPKAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMISSDAFEVDVC 1086

Query: 1054 SLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAE 1113
              CG +   ++                        CH CQ+S  +  ++MPY  + L  E
Sbjct: 1087 RTCGRLAYCSW------------------------CHFCQSSAHVSKISMPYACKLLFQE 1122

Query: 1114 LAAMNI 1119
            L +MN+
Sbjct: 1123 LTSMNV 1128


>gi|164657973|ref|XP_001730112.1| hypothetical protein MGL_2494 [Malassezia globosa CBS 7966]
 gi|159104007|gb|EDP42898.1| hypothetical protein MGL_2494 [Malassezia globosa CBS 7966]
          Length = 691

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 224/552 (40%), Positives = 332/552 (60%), Gaps = 26/552 (4%)

Query: 36  DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
           D CR   +SY G+L A V +  +D G P   E  + GQ P+M+ + RCHL+G  S +LV+
Sbjct: 152 DECRNRLVSYRGRLTARVTWS-VDYG-PEQSEIRDMGQVPIMVGSNRCHLRGLTSSELVA 209

Query: 96  LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCV-RK 154
             EE  EMGGYFI+NG ER+ R +IL K N+ M++ R SF  R   YT KA  IRCV R 
Sbjct: 210 KHEEPNEMGGYFIINGNERLMRFLILAKANHVMALERPSFTRRGPSYTSKACSIRCVGRH 269

Query: 155 DQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYK 214
           D  S+T  ++YL NG V L F  + +EY++PV +VLKALV   D EIF  +         
Sbjct: 270 DLMSITNSVHYLDNGGVTLRFSWRKQEYMVPVVMVLKALVSATDKEIFASIV-------- 321

Query: 215 KEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETV 274
             +    +  +++RV+++L   +  +L T  QCL+++G+ F+ V+   +  S+  V E +
Sbjct: 322 --QADTSNTFLTDRVELLLRSFKQYALWTGEQCLEYLGDKFRVVMRAPEDWSHAQVGEEL 379

Query: 275 IRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKE 334
           I   +  HL+   DK+ LL+FM++KL++ V     +DNPDS Q+QE+L+PG L    +KE
Sbjct: 380 INRLVLTHLDMPRDKYRLLVFMIRKLYAFVAGECCADNPDSPQHQEVLMPGFLYGAIIKE 439

Query: 335 KLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQ 394
           +L+++L   + +I  ++  + K+ DFF+   +++V+ K  +  IGT + + L TG L++ 
Sbjct: 440 RLDEYLINVRSVIARDVRMHAKECDFFDARYVQRVLAKV-NGDIGTRLSSFLATGNLSSP 498

Query: 395 TGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHT 454
           +GLDLQQ  G+T+ AE+LNF R++S FR+VHRGA FA L+TT+VRKLLPE+WGFLCPVHT
Sbjct: 499 SGLDLQQVGGFTIVAEKLNFYRYVSHFRSVHRGAFFAELKTTTVRKLLPEAWGFLCPVHT 558

Query: 455 PDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPP 514
           PDG PCGLLNH + TC++ +        RD        L  L  +GM   +   + +   
Sbjct: 559 PDGSPCGLLNHFSHTCQLTT--------RDLDVAHIPAL--LTSLGMTEGVATQISA--Q 606

Query: 515 AVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYL 574
             + V LDG ++G    +    +   LR  K      +P DLE+G+VP S GG Y  +YL
Sbjct: 607 THVCVQLDGVMLGYATPALARHMATVLRVWKTEGLHAVPLDLEIGFVPTSHGGQYRVVYL 666

Query: 575 FTSPPKFVRPVR 586
           F+   + +RPVR
Sbjct: 667 FSGRARMMRPVR 678


>gi|383862931|ref|XP_003706936.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Megachile
            rotundata]
          Length = 1132

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 326/1134 (28%), Positives = 520/1134 (45%), Gaps = 154/1134 (13%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR   ++Y+  +  D+E  Y+    P++R     G+ P+ML++  C L G    +L  + 
Sbjct: 102  CRLRDLNYSAPITVDIE--YIRGHQPIIRNNLLIGRMPIMLRSSNCVLTGKSHFELAKMN 159

Query: 98   EEAAEMGGYFILNGLERV-------FRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            E   + GGYF++NG E+V        R+ I+ +++    +V S      E  T   ++ +
Sbjct: 160  ECPHDPGGYFVINGQEKVILIQEQMLRNRIILEEDNKGCIVASCNSSTHERKTKTNIIGK 219

Query: 151  CVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYD 210
              R          YY+ +   +           +PV I+ KA+   +D EI   +    +
Sbjct: 220  GGR----------YYMRHNIFQDD---------IPVTIIFKAMGIVSDQEIMQLIGT--E 258

Query: 211  EKYKKEKGAVGSPLVSE-RVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
            E++ K+     +P + E  V  + A+ Q L         +   + F  +   +  E    
Sbjct: 259  EEFMKK----FAPSLEECHVLNVFAQNQALRFLNN----KRKQKRFSVIKSSITDEMKDI 310

Query: 270  VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
            +A  V+     V  N    K   +  M++K+        + D+ D   N+ + L G L++
Sbjct: 311  LATNVLSHVPVVDFNFKM-KATYIALMIRKVMKAQSDGKLVDDRDYYGNKRLELAGSLLS 369

Query: 330  IYLKEKLEDWLRKGKKLIQDEIEN-NGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKT 388
            +  ++  + +  + K++    I      +FD      I K M ++   QI   +   + +
Sbjct: 370  LMFEDLFKRFNWELKQIADKNIPKIKAAQFD------IVKHMRQD---QITNGLAFAISS 420

Query: 389  GRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPESWG 447
            G    +      +R G T    RL+++  +     V+  + F   R  S  R L P  WG
Sbjct: 421  GNWTIKRFK--MERHGVTQVLSRLSYISALGMMTRVN--SQFEKTRKVSGPRSLQPSQWG 476

Query: 448  FLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPK 507
             LCP  TP+GE CGL+ ++     + +  D    IR    +    + +L G  +      
Sbjct: 477  MLCPSDTPEGEGCGLVKNLALMTHITTEIDEEPIIRLAFNLGVENVNILGGEEI------ 530

Query: 508  LVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGG 567
                    V  V L+G ++G++ +   +++V   R L+          L  G+V +    
Sbjct: 531  ----NNRKVYMVFLNGNILGIVKN--YQRLVNVFRLLRRKG-------LINGFVSIYTQH 577

Query: 568  AYPGLYLFTSPPKFVRP--VRNISLPSEESQNIELIGPFEQVFMEIRCPDGG----DGGR 621
             +  + + +   +  RP  +     P  ++++I+L+    + F +    DG     D   
Sbjct: 578  QHRCIQISSDGGRLCRPYIIVQKGEPLIQAEHIKLLEHGVRCFEDF-LNDGLIEYLDVNE 636

Query: 622  RN----AF-------PATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFS 670
             N    AF         TH EI P  +L V A L PY  HNQSPRN YQC M KQ MG  
Sbjct: 637  ENDSSIAFNESHINEKTTHLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQCAMGKQAMGTI 696

Query: 671  VQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMIL 730
                + R D  +Y+L  PQ P+V++ T      D+ P G NAIVAV++Y+GYD+EDA+IL
Sbjct: 697  GYNQRNRIDTLMYNLVYPQAPMVKSRTIELINFDKLPAGQNAIVAVMSYSGYDIEDALIL 756

Query: 731  NKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR--GQKLFRRNKDAKSLHSVIDSDGLPYV 787
            NK+S+DRG     IY+     L    N+  DR  G  +    K +   H +IDSDG+   
Sbjct: 757  NKASIDRGYGRCLIYRNAKCTLKRYANQTYDRIMGPLIDSNTKKSVWKHDIIDSDGIAAP 816

Query: 788  GQ-------MIHPGEPYCSIYDKTTNSWRTNSR--------KGSESVFVDYVAVDMKNSK 832
            G+       M++   P  +I    + + +T +         KG    +V+ V +      
Sbjct: 817  GEMVENRKVMVNKSSPSVNIGPVNSGNVQTQTEYKDVPVVFKGPVPAYVEKVMISSNAED 876

Query: 833  NLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAF 892
                K  +  R TR P IGDKFSSRHGQKGV   +    DMPF+   G+ PD+I+NPH F
Sbjct: 877  AFLIK--LLLRQTRRPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDY-GICPDMIMNPHGF 933

Query: 893  PSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTC 952
            PSRMT+  L+E +A K G + G+F   T F  S                V+++ E L   
Sbjct: 934  PSRMTVGKLIELLAGKAGVIKGEFHYGTAFGGSK---------------VEDVCEELVKH 978

Query: 953  GFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGR 1012
            G+NY G +  YSG+ G  L   I+ GPVYYQ+L+HMV DK   RS G    +TRQP +GR
Sbjct: 979  GYNYLGKDFFYSGITGEPLQAYIYSGPVYYQKLKHMVQDKMHARSRGPRAVLTRQPTEGR 1038

Query: 1013 KRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAI 1072
             + GG+R GEMERD L+ +GA+ +L +RL   SD    D+C+ CG +  + +        
Sbjct: 1039 AKEGGLRLGEMERDCLIGYGASMMLIERLMISSDAFDIDICNKCGLMAYSGW-------- 1090

Query: 1073 REIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI--KITLQ 1124
                            CH+C++S  + T++MPY  + L  EL +MNI  ++TL+
Sbjct: 1091 ----------------CHSCRSSSCVSTISMPYACKLLFQELQSMNIVPRLTLK 1128


>gi|403213510|emb|CCK68012.1| hypothetical protein KNAG_0A03250 [Kazachstania naganishii CBS 8797]
          Length = 1155

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 337/1196 (28%), Positives = 546/1196 (45%), Gaps = 181/1196 (15%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMF--------------------------------D 36
            F  ++ LV+ H++SF+Y +D  L ++                                 D
Sbjct: 60   FLKVKGLVKQHLDSFNYFVDVDLKKIIKANELILSDVDPEFYLKYVDIRIGKRSTSSAND 119

Query: 37   H------CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADS 90
            H      CR   ++Y+  +  D+E  Y    + ++ +    G+ P+ML++ +C L   + 
Sbjct: 120  HLTPPHECRLRDMTYSAPIYVDIE--YTRGRNIIMHKDVEIGRMPIMLRSNKCILSETNE 177

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            +++  L E   + GGYFI+NG E+V   +++ +Q     ++  +  D ++G    +V   
Sbjct: 178  REMARLNECPLDPGGYFIVNGTEKV---ILVQEQLSKNRIIVEA--DEKKGIVQASVTSS 232

Query: 151  C-VRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
               RK ++ V  K     N  + L      +E  +P+ IVL+A    +DLEI   + C  
Sbjct: 233  THERKSKTYVITK-----NDKIYLKHNSIAEE--IPIVIVLRACGIVSDLEIM-QVVCGN 284

Query: 210  DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV----IDGLQSE 265
            D  Y+            +   +   E   L++ T+ Q L+HIG   + +    +  LQ E
Sbjct: 285  DSSYQ------------DIFAVNFEEASKLNVYTQQQALEHIGTKVKTMRRQKLSTLQ-E 331

Query: 266  SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPG 325
               A+A TV+  ++ V   D  +K   +  M +++   + +  + D+ D + N+ + L G
Sbjct: 332  GIEAIATTVVA-HLTVEALDFREKALYMAMMARRVVMAMYNPKMVDDRDYVGNKRLELAG 390

Query: 326  HLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
             LI++  ++  + +    K  I   ++   +  ++  L +I        S  I + +   
Sbjct: 391  QLISLLFEDLFKKFNHDFKTSIDKVLKKPNRAMEYDALLSINV-----HSNNITSGLNRA 445

Query: 386  LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPE 444
            + TG  + +      +RAG T    RL+++  +     +   + F   R  S  R L P 
Sbjct: 446  ISTGNWSLKRFK--MERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRKVSGPRALQPS 501

Query: 445  SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
             +G LC   TP+GE CGL+ ++     + +         D  +     L  ++GV  I  
Sbjct: 502  QFGMLCTADTPEGEACGLVKNLALMTHITT---------DDEEEPIKKLCYILGVEDIT- 551

Query: 505  LPKLVKSGPPAV-LSVLLDGRVVGV--IPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYV 561
               ++ S    +   V L+G +VG+   P+  + +  +  R  K+S            ++
Sbjct: 552  ---VIDSASLHLNYGVYLNGTLVGITRFPNRFVHQFRSLRRTGKISE-----------FI 597

Query: 562  PLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEE--SQNIELIGPFEQVF---MEIRCPDG 616
             + +      +++ T   +  RP+  ++       + ++  +   E VF   +++   + 
Sbjct: 598  SIYINSHQHAVHIATDGGRICRPLIIVTAGKSHVTADHLRKLLDGELVFDDFLKLGLVEY 657

Query: 617  GDGGRRN-AFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQ 665
             D    N +F A          TH EI P  +L  VA L PY  HNQSPRN YQC M KQ
Sbjct: 658  LDVNEENDSFIALYEKDLEPAITHMEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQ 717

Query: 666  TMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDME 725
             +G        R D  LY +  PQ P+V++ T      D+ P G NA VAV++Y+GYD+E
Sbjct: 718  AIGAIAYNQFKRIDTLLYLMTYPQQPMVKSKTIELINYDKLPAGQNATVAVMSYSGYDIE 777

Query: 726  DAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDR--GQKLFRRNKDAKSLHSVIDSDG 783
            DA++LNKSS+DRG    +  +  T  L    N      G      N +    H  +  DG
Sbjct: 778  DALVLNKSSIDRGFGRCETRRKTTTVLKRYPNHTQDIIGGMRVDENNERIWQHEALGPDG 837

Query: 784  LPYVGQMIHPGEPYC--SIYDKTTNSWRTNSR----------KGSESVFVDYVAVDMKNS 831
            L  VG  ++ G+ Y   S+   +T  +  N+           +  ES  +D V   M  S
Sbjct: 838  LGEVGMKLNSGQVYINKSVPTNSTEPFSGNTEAQYRETPVIYRAPESSHIDQVM--MSVS 895

Query: 832  KNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHA 891
             N      +  R +R P +GDKFSSRHGQKGVC  +    DMPFS   G+ PD+I+NPH 
Sbjct: 896  DNDQALIKVLLRQSRRPELGDKFSSRHGQKGVCGIIVQQEDMPFSD-QGVVPDIIMNPHG 954

Query: 892  FPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRT 951
            FPSRMT+  ++E V+ K G L+G     T F        G    D SK LVD+       
Sbjct: 955  FPSRMTVGKMIELVSGKAGVLNGTLEYGTCFG-------GSKLEDMSKILVDQ------- 1000

Query: 952  CGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKG 1011
             GFNY G ++LYSGV G  L   IF GP+YYQ+L+HMV DK   R+ G    +TRQP +G
Sbjct: 1001 -GFNYSGKDMLYSGVTGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEG 1059

Query: 1012 RKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRA 1071
            R R GG+R GEMERD ++A+GA+ LL +RL   SD    DVC+ CG +  + +       
Sbjct: 1060 RSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCNKCGLMGYSGW------- 1112

Query: 1072 IREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
                             C  C++++ +  + +PY  + L  EL +MNI   L+L +
Sbjct: 1113 -----------------CTTCKSAENVIKMTIPYAAKLLFQELLSMNIAPRLRLDE 1151


>gi|195153847|ref|XP_002017835.1| GL17093 [Drosophila persimilis]
 gi|194113631|gb|EDW35674.1| GL17093 [Drosophila persimilis]
          Length = 1137

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 337/1146 (29%), Positives = 516/1146 (45%), Gaps = 175/1146 (15%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR    +Y+  +  D+E  Y      + R     G+ P+ML+   C L G    +L  L 
Sbjct: 110  CRLRDTTYSSPITVDIE--YTRGTQRIKRNNLLIGRMPLMLRCSNCVLTGKSEFELSKLN 167

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC----VR 153
            E   + GGYF++ G E+V   +++ +Q     M+   F            V++C      
Sbjct: 168  ECPLDPGGYFVVRGQEKV---ILIQEQLSWNKMLTEDFNG----------VVQCQVTSST 214

Query: 154  KDQSSVTLKL-----YYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
             ++ S TL L     YYL + S+            +P+ ++ KAL   +D EI  H+   
Sbjct: 215  HEKKSRTLVLSKHGRYYLKHNSMTDD---------IPIVVIFKALGIVSDQEIMAHIGI- 264

Query: 209  YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYY 268
             D K +   GA             L E  +L + T+ + L ++G     V+   QS +  
Sbjct: 265  -DTKSQNRFGAS------------LLEAFNLKVFTQQRALDYMGSKL--VVKRFQSATTK 309

Query: 269  AVAET---VIRDYIFVHLNDNNDKFNL----LIFMLQKLFSLVDHTSVSDNPDSLQNQEI 321
              AE    ++   I  H+  +N  F +    +  M++++ S     ++ D+ D   N+ +
Sbjct: 310  TPAEEARELLLTTILAHVPVDNFNFQMKAIYVSMMVRRVMSAELDKTLFDDRDYYGNKRL 369

Query: 322  LLPGHLITIYLKE--KLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIG 379
             L G LI++  ++  K  +W     K+I D+     K   F        V++   + QI 
Sbjct: 370  ELAGSLISLMFEDLFKRMNW---ELKMIADKNIPKVKAAQF-------DVVKHMRAAQIT 419

Query: 380  TSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-V 438
              +E+ + +G    +      +RAG T    RL+++  +     V+  + F   R  S  
Sbjct: 420  AGLESAISSGNWTIKRFK--MERAGVTQVLSRLSYISALGMMTRVN--SQFEKTRKVSGP 475

Query: 439  RKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIG 498
            R L P  WG LCP  TP+GE CGL+ ++     + +  + R            IL    G
Sbjct: 476  RSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVEERP---------VMILAFNAG 526

Query: 499  VGMIPSLPKLVKSGP---PAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDD 555
            V  I    + V   P   P V  V ++G V+G+  + +   +V +LR ++          
Sbjct: 527  VEDI----REVSGNPINNPNVFLVFINGNVLGLTLNHK--HLVRNLRYMRRKG------- 573

Query: 556  LEVG-YVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIEL------IGPFEQVF 608
              +G +V +        +Y+ T   +  RP   +       +   L      +  F+   
Sbjct: 574  -RMGSFVSVHTSYTQRCIYIHTDGGRLCRPYIIVEKRRPRVKQFHLDELERGVRKFDDFL 632

Query: 609  MEIRCPDGGDGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMY 658
            ++            ++F A          TH EI P  +L V A L PY  HNQSPRN Y
Sbjct: 633  LDGLIEYLDVNEENDSFIAWNEEHIEEGTTHLEIEPFTLLGVCAGLVPYPHHNQSPRNTY 692

Query: 659  QCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLA 718
            QC M KQ MG      K R D  +Y+L  PQ P+V+T T      D+ P G NA VAV++
Sbjct: 693  QCAMGKQAMGMIGYNQKNRIDSLMYNLVYPQAPMVKTKTIELTNFDKLPAGQNATVAVMS 752

Query: 719  YTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DRGQKLFRRNKDAKSL-- 775
            ++GYD+EDA+ILNK+S+DRG     +Y+     +    N+  DR     +     K +  
Sbjct: 753  FSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDRIMGPVKDALTNKVIFK 812

Query: 776  HSVIDSDGLPYVGQ-------MIHPGEPYCS----IYDKTTNSWRTN---SRKGSESVFV 821
            H V+D+DG+   G+       MI+   P  +    +  ++T    T    S KG E  +V
Sbjct: 813  HDVLDTDGIVAPGEQILNKQIMINKEMPAVTSLNPLEGQSTQVPYTAVPISYKGPEPSYV 872

Query: 822  DYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGM 881
            + V V   + ++   K  I  R TR P IGDKFSSRHGQKGV   +    DMP++  +G+
Sbjct: 873  ERVMVSANSEEDFLIK--ILLRQTRIPEIGDKFSSRHGQKGVTGLIVDQEDMPYND-SGI 929

Query: 882  RPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSL 941
             PD+I+NPH FPSRMT+   LE +  K G L GKF   T F  S                
Sbjct: 930  CPDMIMNPHGFPSRMTVGKTLELLGGKAGVLEGKFHYGTAFGGSK--------------- 974

Query: 942  VDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTM 1001
            V ++   L   GFNY G +  YSG+ G  L   I+ GPVYYQ+L+HMV DK   R+ G  
Sbjct: 975  VGDIQAELERHGFNYMGKDFFYSGITGAPLQAYIYSGPVYYQKLKHMVQDKMHARARGPK 1034

Query: 1002 DQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLT 1061
              +TRQP +GR R GG+R GEMERD L+++GA+ L+ +RL   SD    DVC  CG +  
Sbjct: 1035 AVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMISSDAFEVDVCRTCGRLAY 1094

Query: 1062 ATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKI 1121
             ++                        CH CQ+S  +  ++MPY  + L  EL +MN+  
Sbjct: 1095 CSW------------------------CHFCQSSAHVSKISMPYACKLLFQELTSMNVVP 1130

Query: 1122 TLQLGD 1127
             + L D
Sbjct: 1131 KMILED 1136


>gi|365758302|gb|EHN00152.1| Ret1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
          Length = 1149

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 338/1197 (28%), Positives = 540/1197 (45%), Gaps = 180/1197 (15%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
            F  ++ LV+ H++SF+Y +D  L ++                                  
Sbjct: 51   FLKVKGLVKQHLDSFNYFVDTDLKKIIKANQLILSDVDPEFYLKYIDIRVGKKSSSSTKD 110

Query: 37   ------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADS 90
                   CR   ++Y+  +  D+E  Y    + ++ +    G+ P+ML++ +C L  AD 
Sbjct: 111  YLTPPHECRLRDMTYSAPIYVDIE--YTRGRNIIMHKDVEIGRMPIMLRSNKCILYDADE 168

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
             K+  L E   + GGYFI+NG E+V   +++ +Q     ++  +  D ++G    +V   
Sbjct: 169  SKMAKLNECPLDPGGYFIVNGTEKV---ILVQEQLSKNRIIVEA--DEKKGIVQASVTSS 223

Query: 151  C-VRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
               RK ++ V  K     NG + L      +E  +P+ IVLKA    +DLEI   L C  
Sbjct: 224  THERKSKTYVITK-----NGKIYLKHNSIAEE--IPIAIVLKACGILSDLEIM-QLVCGN 275

Query: 210  DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV----IDGLQSE 265
            D  Y+            +   + L E   L + T+ Q L++IG   + +    +  LQ E
Sbjct: 276  DSSYQ------------DIFAVNLEESSKLDIYTQQQALEYIGAKVKTMRRQKLTILQ-E 322

Query: 266  SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPG 325
               A+A TVI  ++ V   D  +K   +  M +++   + +  + D+ D + N+ + L G
Sbjct: 323  GVEAIATTVIA-HLTVEALDFREKALYIAMMTRRVVMAMYNPKMIDDRDYVGNKRLELAG 381

Query: 326  HLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
             LI++  ++  + +    K  I   ++   +  ++  L +I        S  I + +   
Sbjct: 382  QLISLLFEDLFKKFNNDFKLSIDKVLKKPNRAMEYDALLSINV-----HSNNITSGLNRA 436

Query: 386  LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPE 444
            + TG  + +      +RAG T    RL+++  +     +   + F   R  S  R L P 
Sbjct: 437  ISTGNWSLKRF--KMERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRKVSGPRALQPS 492

Query: 445  SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
             +G LC   TP+GE CGL+ ++     + +  D    I++        L  ++GV  I  
Sbjct: 493  QFGMLCTADTPEGEACGLVKNLALMTHITT-DDEEEPIKN--------LCYVLGVEDI-- 541

Query: 505  LPKLVKSGPPAV-LSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL 563
               L+ S    +   V L+G ++G I      K V   R L+ +            ++ +
Sbjct: 542  --TLIDSASLHLNYGVYLNGTLIGSIRFP--IKFVTQFRNLRRTGKV-------SEFISI 590

Query: 564  SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFE-----QVFMEIRCPDGGD 618
                    +++ T   +  RP+  +S      ++  L    +       F+++   +  D
Sbjct: 591  YSNSHQMAVHIATDGGRICRPLIIVSSGQSRVKDTHLRQLLDGKLDFDDFLKLGLVEYLD 650

Query: 619  GGRRN-AFPATHE----------EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTM 667
                N ++ A +E          EI P  +L  VA L PY  HNQSPRN YQC M KQ +
Sbjct: 651  VNEENDSYIALYEKDIVPSMTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAI 710

Query: 668  GFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDA 727
            G        R D  LY +  PQ P+V+T T      D+ P G NA VAV++Y+GYD+EDA
Sbjct: 711  GAIAYNQFKRIDTLLYLMTYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDA 770

Query: 728  MILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSL--HSVIDSDGLP 785
            ++LNKSS+DRG    +  +  T  L    N         R +++ + +  H  +  DGL 
Sbjct: 771  LVLNKSSIDRGFGRCETRRKTTTVLKRYANHTQDIIGGMRVDENGEPIWQHQSLGPDGLG 830

Query: 786  YVGQMIHPGEPYCSIYDKTTNSWRTNSR---------------KGSESVFVDYVAVDMKN 830
             VG  +  G+ Y +    T ++   N                 +G E   +D V   M  
Sbjct: 831  EVGMKVQSGQIYINKSVPTNSADAPNPNIVNVQTQYREAPVIYRGPEPSHIDQVM--MSV 888

Query: 831  SKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPH 890
            S N      +  R +R P +GDKFSSRHGQKGVC  +    DMPF+   G+ PD+I+NPH
Sbjct: 889  SDNDQALIKVLLRQSRRPELGDKFSSRHGQKGVCGIIVKQEDMPFND-QGIVPDIIMNPH 947

Query: 891  AFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLR 950
             FPSRMT+  ++E ++ K G ++G     T F        G    D SK LVD+      
Sbjct: 948  GFPSRMTVGKMIELISGKAGVMNGTLEYGTCFG-------GSKLEDMSKILVDQ------ 994

Query: 951  TCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIK 1010
              GFNY G ++LYSG+ G  L   IF GP+YYQ+L+HMV DK   R+ G    +TRQP +
Sbjct: 995  --GFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTE 1052

Query: 1011 GRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKR 1070
            GR R GG+R GEMERD ++A+GA+ LL +RL   SD    DVC  CG +  + +      
Sbjct: 1053 GRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCDKCGLMGYSGW------ 1106

Query: 1071 AIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
                              C  C++++ +  + +PY  + L  EL +MNI   L+L D
Sbjct: 1107 ------------------CTTCKSAENIIKMTIPYAAKLLFQELLSMNIAPRLRLED 1145


>gi|345568411|gb|EGX51305.1| hypothetical protein AOL_s00054g375 [Arthrobotrys oligospora ATCC
            24927]
          Length = 1166

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 339/1211 (27%), Positives = 533/1211 (44%), Gaps = 202/1211 (16%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMF--------------------------------- 35
            F  ++ LV+ H++SF+Y  D  L ++                                  
Sbjct: 59   FLKVKGLVKQHLDSFNYFCDVELKQIIKANEMVVSEVDPNFFLRYVDIRVGLPERQDSDS 118

Query: 36   ------DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
                  + CR   ++Y   +  D+  QY+   + + R   N G+ P+ML++ +C L    
Sbjct: 119  DADITPNECRLRDMTYAAPVFVDI--QYVRGKAVIARNGVNIGRLPIMLRSNKCVLTNKS 176

Query: 90   SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
              ++  LKE   + GGYFI+NG E+V    IL ++        S  R   E  T K +V 
Sbjct: 177  EHEMAVLKECPLDPGGYFIINGTEKV----ILVQEQL------SKNRIIVEADTKKQIV- 225

Query: 150  RCVRKDQSSVTLKLY------YLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFN 203
                  Q+SVT   +      Y+L+    +          +P+ +VLKAL   +D EI  
Sbjct: 226  ------QASVTSSTHERKSNTYVLSKKGAIYLRHNSVSEDVPIVLVLKALGIQSDHEIL- 278

Query: 204  HLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQ 263
             +    D  Y+            +   +   E   L + T+ Q L + G   +     L 
Sbjct: 279  LMVAGTDSVYQ------------DTFSVNFEECSKLGVFTQQQALDYFGARVRTSRKILT 326

Query: 264  SESYYA-VAETVIRDYIFVHLNDNNDKFN----LLIFMLQKLFSLVDHTSVSDNPDSLQN 318
            +   YA  A   +   +  H+   N  F      +  M +++   + +  + D+ D + N
Sbjct: 327  TRKSYAHEALEALATIVLAHVPVKNLNFRPKALYIAVMTRRILMAMANPQLVDDRDYVGN 386

Query: 319  QEILLPGHLITIYLKEKLEDWLRKGKKLIQDEI---ENNGKKFDFFNLANIKKVMEKNPS 375
            + + L G L+++ L E L        K+  D+I    N  ++FD +N+ +          
Sbjct: 387  KRLELAGQLLSL-LFEDLFKRFNGELKMNIDKILKKPNRTEEFDAYNILS-------GHG 438

Query: 376  KQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
              I   +   + TG  + +      +RAG T    RL+++  +     +   + F   R 
Sbjct: 439  HTITQGMNRAISTGNWSLKRFK--MERAGVTHVLSRLSYISALGMMTRI--SSQFEKTRK 494

Query: 436  TS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILR 494
             S  R L P  +G LCP  TP+GE CGL+ ++     + +  D    IR         L 
Sbjct: 495  VSGPRALQPSQFGMLCPSDTPEGEACGLVKNLALMTHITTDDDEEHVIR---------LA 545

Query: 495  VLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVI--PSSEIEKVVAHLRRLKVSAASVI 552
            +++G   + ++       P A + + ++G   G+   P+  + +     R  K+S     
Sbjct: 546  MVLGAEDVLAVSGQELYAPGAYV-IFMNGTPFGITRYPARFLTRFRKMRRMGKISE---- 600

Query: 553  PDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQ----NIELIGP----F 604
                   +V + +     G+++ T   +  RP+  I + +++S+    +I+ +      F
Sbjct: 601  -------FVSIFINHHQGGVHIATDGGRICRPL--IIVENKKSKVTLRHIKSLKAGKMTF 651

Query: 605  EQVFMEIRCPDGGDGGRRN-----------AFPATHEEIHPTGMLSVVANLTPYSDHNQS 653
            E  F++    +  D    N           +   TH EI P  +L  VA L P+  HNQS
Sbjct: 652  ED-FLKKGLVEYVDVNEENDAHIAIYEHEISASTTHLEIEPFTILGAVAGLIPFPHHNQS 710

Query: 654  PRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAI 713
            PRN YQC M KQ +G        R D  LY +  PQ P+V+T T      D+ P G NA+
Sbjct: 711  PRNTYQCAMGKQAIGAIAYNQFLRIDTLLYLMVYPQQPMVKTRTIELIKYDKLPAGQNAV 770

Query: 714  VAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNK-VDR-GQKLFRRNKD 771
            VAV++Y+GYD+EDA++LNKSSVDRG    Q+ +     L    N+ +DR G +      +
Sbjct: 771  VAVMSYSGYDIEDALVLNKSSVDRGFGRCQVLRKYVTTLKKHPNQTMDRIGDRKSDEEGN 830

Query: 772  AKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNS 831
                H +I+ DGL  VG+ I  GE Y  I  +       N  +G ++   DY    M   
Sbjct: 831  PIKKHRIIEGDGLAAVGERIEQGESY--ILKQVPTHTANNPAEGPQNRLGDYKDAAMNYK 888

Query: 832  KNLPQKAN---------------IRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS 876
               P   +               +  R TR P +GDKFSSRHGQKGVC  +    DMPF+
Sbjct: 889  LTDPAYIDKVMISCSESEQTIIKVLTRQTRRPELGDKFSSRHGQKGVCGIIVQQEDMPFN 948

Query: 877  GVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTD 936
               G  PD+I+NPH FPSRMT+  ++E +A K G L G     T F  S           
Sbjct: 949  DF-GTCPDIIMNPHGFPSRMTVGKMIELLAGKAGVLSGNLQYGTAFGGSK---------- 997

Query: 937  ESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVR 996
                 V ++ E+L + GFNY G + + SG+ G  L   IF GP+YYQ+L+HMV DK   R
Sbjct: 998  -----VQDMSEILISHGFNYSGKDFVTSGITGESLQAYIFFGPIYYQKLKHMVQDKMHSR 1052

Query: 997  STGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLC 1056
            + G    +TRQP +GR R GG+R GEMERD L+A+GA+ LL +RL   SD H  D+C  C
Sbjct: 1053 ARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLMLSSDVHEIDLCENC 1112

Query: 1057 GSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAA 1116
            G +  +++                        C  C++SK +  + +PY  + L  EL +
Sbjct: 1113 GLMGYSSW------------------------CTTCESSKFVTRMKIPYAAKLLLQELLS 1148

Query: 1117 MNIKITLQLGD 1127
            MN+   + L D
Sbjct: 1149 MNVLARIVLED 1159


>gi|254584222|ref|XP_002497679.1| ZYRO0F11066p [Zygosaccharomyces rouxii]
 gi|238940572|emb|CAR28746.1| ZYRO0F11066p [Zygosaccharomyces rouxii]
          Length = 1143

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 340/1194 (28%), Positives = 534/1194 (44%), Gaps = 177/1194 (14%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
            F  ++ LV+ H++SF+Y +D  L ++                                  
Sbjct: 48   FLKVKGLVKQHLDSFNYFVDVDLKKIIKANQLILSDVDPEFYLKYVDIRVGQRSNASSKD 107

Query: 37   ------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADS 90
                   CR   ++Y+  +  D+E  Y    + ++ +    G+ P+ML++ +C L  +D 
Sbjct: 108  YLTPPHECRLRDMTYSAPIYVDIE--YTRGRNIIMHKDVEIGRMPIMLRSNKCILHNSDE 165

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + +  L E   + GGYFI+NG E+V    IL ++        S  R   E    KA+V  
Sbjct: 166  KTMARLNECPLDPGGYFIVNGTEKV----ILVQEQL------SKNRIIVEADEKKAIVQA 215

Query: 151  CVRKDQSSVTLKLYYLL-NGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
             V         K Y +  N  + L      +E  +P+ +VLKA    +DLE+   L C  
Sbjct: 216  SVTSSTHERKSKTYVVTKNDKIYLKHNSIAEE--VPIVVVLKACGIVSDLEVM-QLVCGN 272

Query: 210  DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV----IDGLQSE 265
            D  Y+            +   + L E   L L T+ Q L++IG   + V    +  LQ E
Sbjct: 273  DSSYQ------------DIFAVNLEEASKLGLYTQQQALEYIGSKVKTVRRQKLSVLQ-E 319

Query: 266  SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPG 325
               A+A TVI  ++ V   D  +K   +  M +++   + +  + D+ D + N+ + L G
Sbjct: 320  GIEAIATTVIA-HLTVAALDFREKALYIAMMTRRVVMAMQNYKMVDDRDYVGNKRLELAG 378

Query: 326  HLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
             LI++  ++  + +    K  I   ++   +  ++  L +I        S  I + +   
Sbjct: 379  QLISLLFEDLFKKFNNDFKASIDKVLKKPNRAMEYDALLSINV-----HSNNITSGLSRA 433

Query: 386  LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPE 444
            + TG  + +      +RAG T    RL+++  +     +   + F   R  S  R L P 
Sbjct: 434  ISTGNWSLKRFK--MERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRKVSGPRALQPS 489

Query: 445  SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
             +G LC   TP+GE CGL+ ++     + +         D  +     L  ++GV  I  
Sbjct: 490  QFGMLCTADTPEGEACGLVKNLALMTHITT---------DDEEEPIKKLCFILGVEDI-- 538

Query: 505  LPKLVKSGPPAV-LSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL 563
               L+ S    +   V L+G ++G        K V+  R L+ S    I +     ++ +
Sbjct: 539  --TLIDSASLHLHYGVYLNGTLIGTTKFPV--KFVSQFRNLRRSGK--ISE-----FISI 587

Query: 564  SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFE-----QVFMEIRCPDGGD 618
                 +  +++ T   +  RP+  +S       +  L    E       F+++   +  D
Sbjct: 588  YTNSHHKAVHIATDGGRICRPLIIVSNGKSRVTSEHLKELLEGRLVFDDFLKLGLVEYLD 647

Query: 619  GGRRN-AFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTM 667
                N +F A          TH EI P  +L   A L PY  HNQSPRN YQC M KQ +
Sbjct: 648  VNEENDSFIALYEQDIAPEITHMEIEPFTVLGACAGLIPYPHHNQSPRNTYQCAMGKQAI 707

Query: 668  GFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDA 727
            G        R D  LY +  PQ P+V+T T      D+ P G NA VA+++Y+GYD+EDA
Sbjct: 708  GAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIELIDYDKLPAGQNATVAIMSYSGYDIEDA 767

Query: 728  MILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSL--HSVIDSDGLP 785
            ++LNKSS+DRG    +  +  T  L    N         R N++ + +  H  +  DGL 
Sbjct: 768  LVLNKSSIDRGFGRCETRRKTTAVLKRYPNHTQDIIGGMRVNENGEPIWQHKSLGPDGLG 827

Query: 786  YVGQMIHPGEPYCS----------IYDKTTNSWRTNS--RKGSESVFVDYVAVDMKNSKN 833
             VG  +  G+ Y +          +  +T + +R      +  E   +D V   M  S N
Sbjct: 828  EVGMKLDSGQIYINKSVPTNASEGVLTQTQSQYRETPVIYRAPEPSHIDQVM--MSVSDN 885

Query: 834  LPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFP 893
                  +  R  R P +GDKFSSRHGQKGVC  +    DMPFS   G+ PD+I+NPH FP
Sbjct: 886  DQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVQQEDMPFSD-QGVVPDIIMNPHGFP 944

Query: 894  SRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCG 953
            SRMT+  ++E ++ K G ++G     T F        G    D S+ LVD         G
Sbjct: 945  SRMTVGKMIELISGKAGVMNGSLEYGTCFG-------GSKLEDMSQILVDN--------G 989

Query: 954  FNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRK 1013
            FNY G ++LYSGV G  L   IF GP+YYQ+L+HMV DK   R+ G    +TRQP +GR 
Sbjct: 990  FNYSGKDMLYSGVTGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRS 1049

Query: 1014 RGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIR 1073
            R GG+R GEMERD ++A+GA+ LL +RL T SD    +VC  CG +  + +         
Sbjct: 1050 RDGGLRLGEMERDCVIAYGASQLLLERLMTSSDAFEVEVCEKCGLMGYSGW--------- 1100

Query: 1074 EIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
                           C  C++++ +  +++PY  + L  EL +MNI   L+L D
Sbjct: 1101 ---------------CTTCRSAEHINKMSIPYAAKLLFQELLSMNIAPRLRLED 1139


>gi|384497113|gb|EIE87604.1| DNA-directed RNA polymerase III subunit RPC2 [Rhizopus delemar RA
            99-880]
          Length = 1146

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 343/1225 (28%), Positives = 546/1225 (44%), Gaps = 225/1225 (18%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
            F  ++ LV+ HI+SF+Y ++  L ++                                  
Sbjct: 43   FLKVKGLVKQHIDSFNYFVNVDLQKIIKANEKVTSDVDPHFYLKYTGIRVGMPERTDDDV 102

Query: 37   --------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGA 88
                     CR   ++Y+  +  DVE  Y      V R+    G+ P+ML++  C L G 
Sbjct: 103  ANRSYTPHECRLRDLTYSANIFVDVE--YTRGRQIVKRKNVMIGRLPIMLRSSHCVLSGK 160

Query: 89   DSQKLVSLKEEAAEMGGYFILNGLERVF---------RSVI-LPKQNYPMSMVRSSFRDR 138
            +  +L  +KE   + GGYF++ G E+V          R ++ + K+N  ++ V+SS  +R
Sbjct: 161  NEAELARMKECPLDPGGYFVVKGTEKVILVQEQLSKNRIIVDVDKKNNIVANVQSSTHER 220

Query: 139  REGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTND 198
                           K ++++ +K     NG + L      ++  +PV I LKAL   +D
Sbjct: 221  ---------------KSKTAIFVK-----NGKIYLKHNSISED--IPVAIFLKALGVQSD 258

Query: 199  LEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ-- 256
             EI   L C  D              + +   I + E   L + T++Q L +IG   +  
Sbjct: 259  REI-AQLVCGDDHD------------LHDTFSINIEESSRLRVFTQMQALDYIGAKVKVN 305

Query: 257  ----PVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDN 312
                P +    +E    V  TVI  ++ V   +  +K      M++++ + +      D+
Sbjct: 306  RKMGPTVRKTMAEEALEVLATVILAHVPVENLNFREKSIYAAVMIRRVLAAMSDEVQVDD 365

Query: 313  PDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEI---ENNGKKFDFFNLANIKKV 369
             D + N+ + L G L+++ L E L        K+  D++    N  ++FD FN    + V
Sbjct: 366  RDYVGNKRLELAGQLLSL-LFEDLFKKFNSDLKMNADKVLKKPNRTQEFDIFN----QLV 420

Query: 370  MEKNPSKQIGTSIETMLKTGRLATQT-GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGA 428
            +  +    I +     + TG    +   +D   RAG T    RL+++  +     +   +
Sbjct: 421  LHGD---HITSGFIRAISTGNWVLKRFKMD---RAGITQVLSRLSYISALGMMTRI--SS 472

Query: 429  SFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSK 487
             F   R  S  R L P  WG LCP  TP+GE CGL+ ++     + +            +
Sbjct: 473  QFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITT-----------DQ 521

Query: 488  MRTSILRVLIGVGMIP-SLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKV 546
                I ++   +G+   +L    +   P    VLL+G ++G+  +  ++  V   RRL+ 
Sbjct: 522  EEDPIRKIAFALGVEDVNLLTGAEIYRPNTFIVLLNGVILGI--TRRVQHFVRSFRRLR- 578

Query: 547  SAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNIS--LPSEESQNIELIGPF 604
              A  I +     +V + +      + L +   +  RP+  +   +P+ +  +I  +   
Sbjct: 579  -RAGRISE-----FVSVFVNIHQKTVNLSSDGGRICRPLIIVENGVPAVKQHHINDLIAG 632

Query: 605  EQVFME---------IRCPDGGDGG----RRNAFP-ATHEEIHPTGMLSVVANLTPYSDH 650
            + VF +         +   +  D       ++  P  TH EI P  +L  VA L PY  H
Sbjct: 633  KLVFDDFLKRGLVEYVDVNEESDANIAVYEKDIIPQTTHLEIEPFTILGAVAGLIPYPHH 692

Query: 651  NQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGT 710
            NQSPRN YQC M KQ +G        R +  +Y +  PQ P+V++ T    G D+ P G 
Sbjct: 693  NQSPRNTYQCAMGKQAIGAIGYNQLNRIETLIYLMVYPQQPMVKSKTIELIGYDKLPAGQ 752

Query: 711  NAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI----------YQTETID-LSDDGNKV 759
            NA VAV++Y+GYD+EDA++LNKS +DRG    Q+          Y   T D L+D  +  
Sbjct: 753  NATVAVMSYSGYDIEDALVLNKSGLDRGFGRCQVMRKYATMVKRYPNGTHDRLADPPS-- 810

Query: 760  DRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESV 819
             R  +L+  + DA      I++DG+  VG+ +  G  Y +     +          +++V
Sbjct: 811  -RESELWNESYDA------IEADGIAGVGEPVEAGSIYINKQTPVSTGVDAGVPGAAQTV 863

Query: 820  ---------------FVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVC 864
                           ++D V      S     K NIR   TR P +GDKFSSRHGQKGVC
Sbjct: 864  AYKPAPMRYKSPQTGYIDKVLFTTTESDQTLIKVNIR--QTRRPELGDKFSSRHGQKGVC 921

Query: 865  SQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFAN 924
              +    DMPFS + G+ PD+I+NPH FPSRMT+  ++E +A K G L G     T F  
Sbjct: 922  GIIVQQEDMPFSDL-GVCPDIIMNPHGFPSRMTVGKMIELLAGKAGVLDGSLQYGTAFGG 980

Query: 925  SVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQR 984
            S                V+++  +L   GFNY G + + SG+ G  L+  IF GP+YYQ+
Sbjct: 981  SK---------------VEDMSRILINHGFNYSGKDYVTSGITGEPLSAYIFFGPIYYQK 1025

Query: 985  LRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTC 1044
            L+HMV DK   R+ G    +TRQP +GR R GG+R GEMERD+L+ +GA+ LL +RL   
Sbjct: 1026 LKHMVMDKMHARARGPRATLTRQPTEGRSRDGGLRLGEMERDALIGYGASMLLLERLMVS 1085

Query: 1045 SDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMP 1104
            SD     VC+ CG +  + +                        C  C++SK M+ + +P
Sbjct: 1086 SDIFEVHVCNECGFIGYSGW------------------------CQFCKSSKFMKAMKIP 1121

Query: 1105 YVFRYLAAELAAMNIKITLQLGDGA 1129
            Y  + L  EL AMNI   L L D  
Sbjct: 1122 YAAKLLFQELLAMNISPRLVLEDAV 1146


>gi|125808948|ref|XP_001360931.1| GA21006 [Drosophila pseudoobscura pseudoobscura]
 gi|54636103|gb|EAL25506.1| GA21006 [Drosophila pseudoobscura pseudoobscura]
          Length = 1137

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 339/1147 (29%), Positives = 516/1147 (44%), Gaps = 177/1147 (15%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR    +Y+  +  D+E  Y      + R     G+ P+ML+   C L G    +L  L 
Sbjct: 110  CRLRDTTYSSPITVDIE--YTRGTQRIKRNNLLIGRMPLMLRCSNCVLTGKSEFELSKLN 167

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC----VR 153
            E   + GGYF++ G E+V   +++ +Q     M+   F            V++C      
Sbjct: 168  ECPLDPGGYFVVRGQEKV---ILIQEQLSWNKMLTEDFNG----------VVQCQVTSST 214

Query: 154  KDQSSVTLKL-----YYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
             ++ S TL L     YYL + S+            +P+ ++ KAL   +D EI  H+   
Sbjct: 215  HEKKSRTLVLSKHGRYYLKHNSMTDD---------IPIVVIFKALGIVSDQEIMAHIGI- 264

Query: 209  YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYY 268
             D K +   GA             L E  +L + T+ + L ++G     V+   QS +  
Sbjct: 265  -DTKSQNRFGAS------------LLEAFNLKVFTQQRALDYMGSKL--VVKRFQSATTK 309

Query: 269  AVAETVIRDY----IFVHLNDNNDKFNL----LIFMLQKLFSLVDHTSVSDNPDSLQNQE 320
              AE   RD     I  H+  +N  F +    +  M++++ S     ++ D+ D   N+ 
Sbjct: 310  TPAEEA-RDLLLTTILAHVPVDNFNFQMKAIYVSMMVRRVMSAELDKTLFDDRDYYGNKR 368

Query: 321  ILLPGHLITIYLKE--KLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQI 378
            + L G LI++  ++  K  +W     K+I D+     K   F        V++   + QI
Sbjct: 369  LELAGSLISLMFEDLFKRMNW---ELKMIADKNIPKVKAAQF-------DVVKHMRAAQI 418

Query: 379  GTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS- 437
               +E+ + +G    +      +RAG T    RL+++  +     V+  + F   R  S 
Sbjct: 419  TAGLESAISSGNWTIKRFK--MERAGVTQVLSRLSYISALGMMTRVN--SQFEKTRKVSG 474

Query: 438  VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLI 497
             R L P  WG LCP  TP+GE CGL+ ++     + +  + R            IL    
Sbjct: 475  PRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVEERP---------VMILAFNA 525

Query: 498  GVGMIPSLPKLVKSGP---PAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPD 554
            GV  I    + V   P   P V  V ++G V+G+  + +   +V +LR ++         
Sbjct: 526  GVEDI----REVSGNPINNPNVFLVFINGNVLGLTLNHK--HLVRNLRYMRRKG------ 573

Query: 555  DLEVG-YVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIEL------IGPFEQV 607
               +G +V +        +Y+ T   +  RP   +       +   L      +  F+  
Sbjct: 574  --RMGSFVSVHTSYTQRCIYIHTDGGRLCRPYIIVEKRRPRVKQFHLDELERGVRKFDDF 631

Query: 608  FMEIRCPDGGDGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNM 657
             ++            ++F A          TH EI P  +L V A L PY  HNQSPRN 
Sbjct: 632  LLDGLIEYLDVNEENDSFIAWNEEHIEEGTTHLEIEPFTLLGVCAGLVPYPHHNQSPRNT 691

Query: 658  YQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVL 717
            YQC M KQ MG      K R D  +Y+L  PQ P+V+T T      D+ P G NA VAV+
Sbjct: 692  YQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPQAPMVKTKTIELTNFDKLPAGQNATVAVM 751

Query: 718  AYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DRGQKLFRRNKDAKSL- 775
            +++GYD+EDA+ILNK+S+DRG     +Y+     +    N+  DR     +     K + 
Sbjct: 752  SFSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDRIMGPVKDALTNKVIF 811

Query: 776  -HSVIDSDGLPYVGQ-------MIHPGEPYCS----IYDKTTNSWRTN---SRKGSESVF 820
             H V+D+DG+   G+       MI+   P  +    +  ++T    T    S KG E  +
Sbjct: 812  KHDVLDTDGIVAPGEQILNKQIMINKEMPAVTSLNPLEGQSTQVPYTAVPISYKGPEPSY 871

Query: 821  VDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTG 880
            V+ V V   + ++   K  I  R TR P IGDKFSSRHGQKGV   +    DMP++  +G
Sbjct: 872  VERVMVSANSEEDFLIK--ILLRQTRIPEIGDKFSSRHGQKGVTGLIVDQEDMPYND-SG 928

Query: 881  MRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKS 940
            + PD+I+NPH FPSRMT+   LE +  K G L GKF   T F  S               
Sbjct: 929  ICPDMIMNPHGFPSRMTVGKTLELLGGKAGVLEGKFHYGTAFGGSK-------------- 974

Query: 941  LVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGT 1000
             V ++   L   GFNY G +  YSG+ G  L   I+ GPVYYQ+L+HMV DK   R+ G 
Sbjct: 975  -VGDIQAELERHGFNYMGKDFFYSGITGAPLQAYIYSGPVYYQKLKHMVQDKMHARARGP 1033

Query: 1001 MDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVL 1060
               +TRQP +GR R GG+R GEMERD L+++GA+ L+ +RL   SD    DVC  CG + 
Sbjct: 1034 KAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMISSDAFEVDVCRTCGRLA 1093

Query: 1061 TATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIK 1120
              ++                        CH CQ+S  +  ++MPY  + L  EL +MN+ 
Sbjct: 1094 YCSW------------------------CHFCQSSAHVSKISMPYACKLLFQELTSMNVV 1129

Query: 1121 ITLQLGD 1127
              + L D
Sbjct: 1130 PKMILED 1136


>gi|66517310|ref|XP_625037.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform 1
            [Apis mellifera]
          Length = 1134

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 328/1131 (29%), Positives = 526/1131 (46%), Gaps = 148/1131 (13%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR   ++Y+  +  D+E  Y+    P+++     G+ P+ML++  C L G    +L  + 
Sbjct: 104  CRLRDLNYSAPITVDIE--YIRGHQPIIKNNLLIGRMPIMLRSSNCVLTGKSHFELAKMN 161

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            E   + GGYFI+NG E+V   +++ +Q     M+R+  R   E  +   +V  C     +
Sbjct: 162  ECPHDPGGYFIVNGQEKV---ILIQEQ-----MLRN--RIILEEDSKGCIVASC-----N 206

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYL---LPVGIVLKALVDTNDLEIFNHLTCCYDEKYK 214
            SVT +     N   R G +          +PV I+ KA+   +D EI   +    +E++ 
Sbjct: 207  SVTHERKTKTNIVGRAGRYYMRHNIFQDDIPVTIIFKAMGIVSDQEIMQLIGT--EEEFM 264

Query: 215  KEKGAVGSPLVSE-RVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAET 273
            K+     +P + E  V  + A+ Q L   +     +   + F  +   +  E   A+A  
Sbjct: 265  KK----FAPSLEECHVLNVFAQNQALRFLSN----KRKQKRFSVIKSSITDEMKDALATN 316

Query: 274  VIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLK 333
            ++     +  N    K   +  M++K+        + D+ D   N+ + L G L+++  +
Sbjct: 317  ILSHVPVIDFNFKM-KATYIALMIRKVMKAQSDGKLVDDRDYYGNKRLELAGSLLSLMFE 375

Query: 334  EKLEDWLRKGKKLIQDEIEN-NGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLA 392
            +  + +  + K++    I      +FD      I K M ++   QI   +   + +G   
Sbjct: 376  DLFKRFNWELKQIADKNIPKIKAAQFD------IVKHMRQD---QITNGLAFAISSGNWT 426

Query: 393  TQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPESWGFLCP 451
             +      +R G T    RL+++  +     V+  + F   R  S  R L P  WG LCP
Sbjct: 427  IKRFK--MERHGVTQVLSRLSYISALGMMTRVN--SQFEKTRKVSGPRSLQPSQWGMLCP 482

Query: 452  VHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKS 511
              TP+GE CGL+ ++     + +  D    IR    +    + +L G  +          
Sbjct: 483  SDTPEGEGCGLVKNLALMTHITTEIDEEPIIRLAFNLGVENVNILGGEEI---------- 532

Query: 512  GPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPG 571
                V  V L+G ++G++ +   +++V   R L+          L  G+V +     +  
Sbjct: 533  NNKNVYMVFLNGNILGIVKN--YQRLVNVFRLLRRKG-------LINGFVSIYTQHQHRC 583

Query: 572  LYLFTSPPKFVRP---VRNISLPSEESQNIEL----IGPFEQVFMEIRCPDGGDGGRRN- 623
            + + +   +  RP   V+N   P  + ++++L    I  FE  F++    +  D    N 
Sbjct: 584  IQISSDGGRLCRPYIIVQN-GDPLVQEEHVKLLEQGIRSFED-FLQDGLIEYLDVNEEND 641

Query: 624  ---AF-------PATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQA 673
               AF         TH EI P  +L V A L PY  HNQSPRN YQC M KQ MG     
Sbjct: 642  SSIAFNESHINEKTTHLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQCAMGKQAMGTIGYN 701

Query: 674  LKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKS 733
             + R D  +Y+L  PQTP+V++ T      D+ P G NA +AV++Y+GYD+EDA+ILNK+
Sbjct: 702  QRNRIDTLMYNLVYPQTPMVKSRTIELINFDKLPAGQNATIAVMSYSGYDIEDALILNKA 761

Query: 734  SVDRGMCHGQIYQTETIDLSDDGNKV-DR--GQKLFRRNKDAKSLHSVIDSDGLPYVGQ- 789
            S+DRG     +Y+     L    N+  DR  G  +    K +   H +IDSDG+   G+ 
Sbjct: 762  SIDRGFGRCLVYRNAKCTLKRYANQTYDRIMGPLIDANTKKSVWKHEIIDSDGIAAPGEM 821

Query: 790  ------MIHPGEPYCSIYDKTTNSWRTNSR--------KGSESVFVDYVAVDMKNSKNLP 835
                  M++   P  +I    + + +T +         KG    +++ V +         
Sbjct: 822  VENRKVMVNKSSPAANIGPVNSGNVQTQTEYKDVPVVFKGPVPAYIEKVMISSNAEDAFL 881

Query: 836  QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSR 895
             K  +  R TR P IGDKFSSRHGQKGV   +    DMPF+   G+ PD+I+NPH FPSR
Sbjct: 882  IK--LLLRQTRRPEIGDKFSSRHGQKGVVGLIVEQEDMPFNDY-GICPDMIMNPHGFPSR 938

Query: 896  MTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFN 955
            MT+  L+E +A K G + G+F   T F  S               + D   E+++  GFN
Sbjct: 939  MTVGKLIELLAGKAGVIKGEFHYGTAFGGS--------------KVEDVCAELVKH-GFN 983

Query: 956  YHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRG 1015
            Y G +  YSG+ G  L   I+ GPVYYQ+L+HMV DK   R+ G    +TRQP  GR + 
Sbjct: 984  YLGKDFFYSGITGEPLQAYIYSGPVYYQKLKHMVQDKMHARARGPRAVLTRQPTGGRAKE 1043

Query: 1016 GGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREI 1075
            GG+R GEMERD L+ +GA+ +L +RL   SD    DVC+ CG +  + +           
Sbjct: 1044 GGLRLGEMERDCLIGYGASMMLIERLMISSDAFDIDVCNKCGLMAYSGW----------- 1092

Query: 1076 GGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI--KITLQ 1124
                         CH+C++S  + T++MPY  + L  EL +MNI  ++TL+
Sbjct: 1093 -------------CHSCRSSSCVSTISMPYACKLLFQELQSMNIVPRLTLK 1130


>gi|340376544|ref|XP_003386792.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Amphimedon
            queenslandica]
          Length = 1131

 Score =  408 bits (1048), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 335/1138 (29%), Positives = 516/1138 (45%), Gaps = 171/1138 (15%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
             CR   ++Y+  +  D+E  Y      V R+ F+ GQ P+ML++  C L   + ++L  L
Sbjct: 100  ECRLRDMTYSAPVTVDIE--YTRGTQRVRRKGFSIGQLPIMLRSANCVLSNKNQEELAKL 157

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC-VRKD 155
            KE   + GGYF++ G E+V    IL ++    + +   +        DK   I C V   
Sbjct: 158  KECPIDPGGYFVVRGTEKV----ILIQEQLSKNRIIVDY--------DKKGNIGCSVTSS 205

Query: 156  QSSVTLKLYYLLNGSVRLGFWLQGKEYL--LPVGIVLKALVDTNDLEIFNHLTCCYDEKY 213
                  K   +  G+    F+L+   +   +PV +V KA+   +D EI   + C      
Sbjct: 206  THDRKSKTNLIFKGN---QFYLKHNSFTDDIPVVLVFKAMNIISDQEIVQMIGC------ 256

Query: 214  KKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAET 273
            +    +V +P         L E   L++ T+ + L+ +G   +  + G +  S    A  
Sbjct: 257  EDSVLSVFAPS--------LEECAMLNVYTQKKALEVVGAKTRKRMYG-KPRSKAEEAHD 307

Query: 274  VIRDYIFVHL----NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
            V+  Y+  H+    ND   K + L  M++++        V D+ D   N+ + L G L++
Sbjct: 308  VLSHYVLAHIPVESNDFKIKASFLSLMIRRVILATAKDEV-DDRDYYGNKRLELAGPLLS 366

Query: 330  IYLKEKLEDWLRKGKKLIQDEI-ENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKT 388
            +  ++  + +  + KK+I   + +   + FD   + ++K  +       I   IET L T
Sbjct: 367  LLFEDLFKRYNSELKKIIDRTLAKKRTQPFDV--VCHMKNSI-------ITQGIETALST 417

Query: 389  GRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPESWG 447
            G    +      +R G T    R++F+  +     +   + F   R  S  R L P  WG
Sbjct: 418  GNWTLRRFK--MERGGVTQVLSRMSFIACLGHMTRI--TSQFEKTRKISGPRSLQPSQWG 473

Query: 448  FLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPK 507
             +CP  TP+GE CGL+ ++     + +  D  G IR         L   +GV  I  L  
Sbjct: 474  MVCPSDTPEGEACGLVKNLALISHITTDVD-EGPIRR--------LAFNLGVEDIRYLSG 524

Query: 508  LVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGG 567
               S   + L VLL+G +VGV+        V + R L+ +            +V +S   
Sbjct: 525  EELSSNESYL-VLLNGNIVGVV--RYYASFVRYFRLLRRNGRMN-------EFVSISTNH 574

Query: 568  AYPGLYLFTSPPKFVRPVRNI--SLPSEESQNIELIGP---FEQVFMEIRCPDGGDGGRR 622
                + + +   +  RP   +   +P   S +I+LI     FE  F+     +  D    
Sbjct: 575  HNRTVSISSDSGRVCRPYIIVINGVPRVTSHHIDLISKGMEFED-FLAKGLIEYLDVNEE 633

Query: 623  N-----------AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSV 671
            N               TH EI P  +L V A L PY  HNQSPRN YQC M KQ +G   
Sbjct: 634  NDSMIALYESDINSSTTHLEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAIGTIA 693

Query: 672  QALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILN 731
               + R D  L  +  PQ PIV+T T      D+ P G NA+VA++ Y+GYD+EDA+ILN
Sbjct: 694  YNQQNRIDTLLNIMIYPQAPIVKTRTIDLIKFDKLPAGFNAVVAIMCYSGYDIEDALILN 753

Query: 732  KSSVDRGMCHGQIYQTETIDLSDDGN-----------KVDRGQKLFRRNKDAKSLHSVID 780
            ++S+DRG+    + + +T  L    N           ++D G+ +++        H+ +D
Sbjct: 754  RASLDRGLARSLVCRKQTCSLKRYSNMTFDKILGPSREMDTGKPIWK--------HTPLD 805

Query: 781  SDGLPYVGQMIHPGE------------PYCSIYDKTTNSWRTN-------SRKGSESVFV 821
             DG+  V + +  G+              C            N       S +G   V+ 
Sbjct: 806  EDGIVGVAERVSSGQVLINKLVPQVTQSLCPGGGGAAAGGADNNYKSCPVSYRGPTDVYA 865

Query: 822  DYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGM 881
            + V +   N ++   K  I     R P IGDKFSSRHGQKGVC  + P  DMPF+   G+
Sbjct: 866  NNVLITNNNEESYLIK--ILLESIRIPEIGDKFSSRHGQKGVCGLIVPQEDMPFTD-QGL 922

Query: 882  RPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSL 941
             PD+I+NPH FPSRMT+  L+E +A K G+L+G +  +T F        GD  +D S  L
Sbjct: 923  CPDIIMNPHGFPSRMTVGKLIEVIAGKTGALNGTYRYSTAFG-------GDKVSDISSDL 975

Query: 942  VDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTM 1001
            +          GFNY G ++L SG+ G  L   I+ G VYYQRL+HMV DK   RS G  
Sbjct: 976  ISN--------GFNYVGKDILTSGITGEPLEAYIYTGIVYYQRLKHMVLDKMHARSRGPR 1027

Query: 1002 DQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLT 1061
              +TRQP +GR R GG+R GEMERD L+++G+  LL +RL T SD     +C  CG +  
Sbjct: 1028 VILTRQPTEGRSRDGGLRLGEMERDCLISYGSCMLLRERLMTSSDEFDVQICESCGLLAY 1087

Query: 1062 ATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
              +                        CH CQ+S  + ++ +PY F+ L  E+ +MNI
Sbjct: 1088 NDW------------------------CHYCQSSGSVTSIKIPYAFKLLIQEMQSMNI 1121


>gi|366989721|ref|XP_003674628.1| hypothetical protein NCAS_0B01700 [Naumovozyma castellii CBS 4309]
 gi|342300492|emb|CCC68254.1| hypothetical protein NCAS_0B01700 [Naumovozyma castellii CBS 4309]
          Length = 1150

 Score =  407 bits (1047), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 338/1200 (28%), Positives = 544/1200 (45%), Gaps = 188/1200 (15%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
            F  ++ LV+ H++SF+Y +D  L ++                                  
Sbjct: 53   FLKVKGLVKQHLDSFNYFVDVDLKKIIKANQVILSDVDPEFYLKYVDIRVGKRSTSSAKD 112

Query: 37   ------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADS 90
                   CR   ++Y+  +  D+E  Y    + ++ +    G+ P+ML++ +C L G D 
Sbjct: 113  YLTPPHECRLRDMTYSAPIYVDIE--YTRGRNIIMHKDVELGRMPIMLRSNKCTLYGIDE 170

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            +++  L E   + GGYFI+NG E+V   +++ +Q     ++  +  D ++G    +V   
Sbjct: 171  KEMAKLNECPLDPGGYFIVNGTEKV---ILVQEQLSKNRIIVEA--DEKKGIVQASVTSS 225

Query: 151  C-VRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
               R+ ++ V  K     N  + L      +E  +P+ IVLKA    +DLEI   L C  
Sbjct: 226  THERRSKTYVITK-----NDKIYLKHNSITEE--IPIVIVLKACGVVSDLEIM-QLVCGN 277

Query: 210  DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV----IDGLQSE 265
            D  Y+            +   + L E   L++ T+ Q L+ IG   + +    +  LQ E
Sbjct: 278  DSSYQ------------DIFAVNLEEASRLNIYTQQQALEFIGTKVKTMRRQKLSVLQ-E 324

Query: 266  SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPG 325
               A+A TV+  ++ V   D  +K   +  M +++   + +  + D+ D + N+ + L G
Sbjct: 325  GIEAIATTVVA-HLTVEALDFREKALYMAMMTRRVVMAIQNPKMVDDRDYVGNKRLELAG 383

Query: 326  HLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
             LI++  ++  + +    K  I   ++   +  ++  L +I        S  I + +   
Sbjct: 384  QLISLLFEDLFKKFNSDFKATIDKVLKKPNRAMEYDALLSINV-----HSNNITSGLNRA 438

Query: 386  LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPE 444
            + TG  + +      +RAG T    RL+++  +     +   + F   R  S  R L P 
Sbjct: 439  ISTGNWSLKRF--KMERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRKVSGPRALQPS 494

Query: 445  SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
             +G LC   TP+GE CGL+ ++     + +  D    I+     R   +  +  V +I S
Sbjct: 495  QFGMLCTADTPEGEACGLVKNLALMTHITT-DDEEEPIK-----RLCYILGVEDVSLIDS 548

Query: 505  LPKLVKSGPPAVLSVLLDGRVVGV--IPSSEIEKVVAHLRRL-KVSAASVIPDDLEVGYV 561
                +  G      V L+G ++G    P   + +   HLRR  K+S            ++
Sbjct: 549  ASLHLNFG------VYLNGTLIGTTRFPIKFVSQ-FRHLRRTGKISE-----------FI 590

Query: 562  PLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQ--------NIELIGPFEQVFMEIRC 613
             +        +++ T   +  RP+  ++               N EL+  F+  F+++  
Sbjct: 591  SIYANSHQKAVHIATDGGRICRPLIIVTKGKSHVTADHLRRLLNGELV--FDD-FLKLGL 647

Query: 614  PDGGDGGRRN-AFPATHE----------EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQM 662
             +  D    N +F A +E          EI P  +L  VA L PY  HNQSPRN YQC M
Sbjct: 648  VEYLDVNEENDSFIALYEKDIESASTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAM 707

Query: 663  AKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGY 722
             KQ +G        R D  LY +  PQ P+V+T T      D+ P G NA VAV++Y+GY
Sbjct: 708  GKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGY 767

Query: 723  DMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSL--HSVID 780
            D+EDA++LNK+S+DRG    +  +  T  L    N         R +++ + +  H  + 
Sbjct: 768  DIEDALVLNKASIDRGFGRCETRRKTTTVLKRYPNHTQDIIGGMRVDENGEPIWQHKALG 827

Query: 781  SDGLPYVGQMIHPGEPYCS-------IYDKTTNSWRTNSR------KGSESVFVDYVAVD 827
            +DGL  VG  +  G+ Y +         D TT + +   R      +  E   +D V   
Sbjct: 828  ADGLGEVGMKVESGQIYINKSVPTNQSNDMTTQAQQAQYRETPVIYRAPEPSHIDQVM-- 885

Query: 828  MKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLII 887
            M  S N      +  R  R P +GDKFSSRHGQKGVC  +    DMPF+   G+ PD+I+
Sbjct: 886  MSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVKQEDMPFND-QGIVPDIIM 944

Query: 888  NPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGE 947
            NPH FPSRMT+  ++E ++ K G L+G     T F        G    D SK LVD+   
Sbjct: 945  NPHGFPSRMTVGKMIELISGKAGVLNGSLEYGTCFG-------GSKLEDMSKILVDQ--- 994

Query: 948  MLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQ 1007
                 GFNY G ++LYSG+ G  L   IF GP+YYQ+L+HMV DK   R+ G    +TRQ
Sbjct: 995  -----GFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQ 1049

Query: 1008 PIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHP 1067
            P +GR R GG+R GEMERD ++A+GA+ LL +RL   SD    DVC  CG +  + +   
Sbjct: 1050 PTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCDKCGLMGYSGW--- 1106

Query: 1068 QKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
                                 C  C++++ +  + +PY  + L  EL +MNI   L++ D
Sbjct: 1107 ---------------------CTTCKSAENIIKMTIPYAAKLLFQELLSMNIAPRLRMED 1145


>gi|345498326|ref|XP_001607116.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Nasonia
            vitripennis]
          Length = 1135

 Score =  407 bits (1047), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 325/1136 (28%), Positives = 509/1136 (44%), Gaps = 159/1136 (13%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR   ++Y+  +  D+E  Y+    P++R     G+ P+ML++  C L    + +L  + 
Sbjct: 106  CRLRDLNYSAPITVDIE--YMRGHQPIIRNNLLIGRMPIMLRSSNCVLSEKSNFELAKMN 163

Query: 98   EEAAEMGGYFILNGLERV-------FRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            E   + GGYFI+NG E+V        R+ I+ +++    +V S     +E  T   V+ R
Sbjct: 164  ECPHDPGGYFIINGQEKVILIQEQMLRNRIILEEDNKNCIVASCNSATQERKTKTNVIGR 223

Query: 151  CVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYD 210
              +          YYL +   +           +PV I+ KA+    D EI   +    +
Sbjct: 224  AGK----------YYLRHNIFQDD---------IPVVIIFKAMGIVCDQEIVQLIGT--E 262

Query: 211  EKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIG-----EHFQPVIDGLQSE 265
            E + K+ GA             L E   L++  + Q L+++G     + F  V   +  E
Sbjct: 263  ENFMKKIGAS------------LEECHALNIVAQNQALKYLGNKRKQKRFTVVKSSITDE 310

Query: 266  SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPG 325
                +A  ++     +  N    K   L  M++K+        + D+ D   N+ + L G
Sbjct: 311  MKDVLASNILSHVPVIDFN-FKLKATYLALMVRKVMIAQTDGKLVDDRDYYGNKRLELAG 369

Query: 326  HLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
             L+ +      ED  ++    ++   + N  K        +K +   + +  +  +I + 
Sbjct: 370  SLLALMF----EDLFKRFNWDLKTIADKNIPKIKAAQFDIVKHMRHDSITNGLAVAISSG 425

Query: 386  LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPE 444
              T +          +R G T    RL+++  +     V+  + F   R  S  R L P 
Sbjct: 426  NWTIKRFKM------ERHGVTQVLSRLSYISALGMMTRVN--SQFEKTRKVSGPRSLQPS 477

Query: 445  SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
             WG LCP  TP+GE CGL+ ++     + +  +    +R    +    + +L G  +   
Sbjct: 478  QWGMLCPSDTPEGEGCGLVKNLALMTHITTEIEEEPIMRLAFNLGVENVNILGGEEI--- 534

Query: 505  LPKLVKSGPPAVLSVLLDGRVVGVIPSS-EIEKVVAHLRR--LKVSAASVIPDDLEVGYV 561
                       V  V L+G ++G++ +   +  V   LRR  L     S+ P        
Sbjct: 535  -------NNKDVYMVFLNGNILGIVKNYYRLVTVFRMLRRKGLVNQFVSIYPQHQHRCVQ 587

Query: 562  PLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN---------IELIGPFEQ-----V 607
              S GG     Y+     + +    +I L  +  ++         IE +   E+      
Sbjct: 588  ISSDGGRLCRPYIIVEHCQPLVKAEHIKLLEQGVRSFEDFLHDGTIEYLDVNEENDSFIA 647

Query: 608  FMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTM 667
            F E    +G           TH EI P  +L V A L PY  HNQSPRN YQC M KQ M
Sbjct: 648  FSESHIKEG----------ITHLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQCAMGKQAM 697

Query: 668  GFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDA 727
            G      + R D  +Y+L  P  P+V+T T      D+ P G NAIVAV++Y+GYD+EDA
Sbjct: 698  GTIAYNQRNRIDTLMYNLVYPHAPMVKTKTIELINFDKLPAGQNAIVAVMSYSGYDIEDA 757

Query: 728  MILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKS-----LHSVIDSD 782
            +ILNK+S+DRG     +Y+     L    N+     ++   + DA +      H +ID +
Sbjct: 758  LILNKASIDRGYGRCLVYKNAKCVLKKYANQT--CDRIMPASVDATTKKPIWQHDIIDGE 815

Query: 783  GLPYVGQMI-------HPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKN---SK 832
            G+   G+M+       +   P  +    TT S      K +  V+ + V   ++    S 
Sbjct: 816  GIAAPGEMVSNKKVMVNKSTPSANTGPVTTGSQAQTEYKNANLVYKNPVPAYIEKVMISS 875

Query: 833  NLPQKANIRF--RHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPH 890
            N      I+   R TR P IGDKFSSRHGQKGV   +    DMPF+  +G+ PD+I+NPH
Sbjct: 876  NAEDAYLIKLLLRQTRRPEIGDKFSSRHGQKGVTGLIVEQEDMPFND-SGICPDMIMNPH 934

Query: 891  AFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLR 950
             FPSRMT+  L+E +A K G L GKF   T F  S                V+++ E L 
Sbjct: 935  GFPSRMTVGKLIELLAGKAGVLKGKFHYGTAFGGSK---------------VEDVCEELV 979

Query: 951  TCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIK 1010
            + G+NY G ++ YSG+ G  L   I+ GPVYYQ+L+HMV DK   R+ G    +TRQP +
Sbjct: 980  SQGYNYLGKDIFYSGITGEPLQAYIYSGPVYYQKLKHMVQDKMHARARGPRAVLTRQPTE 1039

Query: 1011 GRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKR 1070
            GR + GG+R GEMERD L+ +GA+ +L +RL   SD    DVC+ CG +    +      
Sbjct: 1040 GRSKDGGLRLGEMERDCLIGYGASMMLIERLMLSSDAFDVDVCNKCGLMAYTGY------ 1093

Query: 1071 AIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI--KITLQ 1124
                              CH+C++S  + T+ MPY  + L  EL +MNI  ++TL+
Sbjct: 1094 ------------------CHSCRSSACVSTITMPYACKLLFQELQSMNIVPRLTLK 1131


>gi|448103831|ref|XP_004200136.1| Piso0_002709 [Millerozyma farinosa CBS 7064]
 gi|359381558|emb|CCE82017.1| Piso0_002709 [Millerozyma farinosa CBS 7064]
          Length = 1158

 Score =  407 bits (1047), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 336/1216 (27%), Positives = 537/1216 (44%), Gaps = 204/1216 (16%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
            F  ++ LV+ H++SF+Y +D  L ++                                  
Sbjct: 48   FLKVKGLVKQHLDSFNYFVDVDLKKIIKANELVLSDVDPEFYLKYLDIRVGHKSSSPPGT 107

Query: 37   --------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGA 88
                     CR   ++Y+  +  DVE  Y      ++ +    G+ P+ML++ +C L G 
Sbjct: 108  KEVNLAPHECRLRDLTYSAPIYVDVE--YTRGRKIIMHKDLEIGRMPIMLRSNKCILDGI 165

Query: 89   DSQKLVSLKEEAAEMGGYFILNGLERVF-------RSVILPKQNYPMSMVRSSFRDRREG 141
            D  K+    E   + GGYFI+NG E+V        ++ I+ + +   ++V++S       
Sbjct: 166  DEHKMAQYDECPLDPGGYFIVNGTEKVILVQEQLSKNRIIVEADEKKNIVQASVTSSTHE 225

Query: 142  YTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEI 201
               K  VI   + D+        YL + S+            +P+ IVLKA   T+DLEI
Sbjct: 226  RKSKTYVI--TKNDK-------IYLKHNSIAED---------VPIVIVLKAAGITSDLEI 267

Query: 202  FNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ----- 256
               L C  D  Y+            +   +   E   L + T+ Q L +IG+  +     
Sbjct: 268  L-QLVCGQDPNYQ------------DLFAVNFEEAARLEVLTQQQALNYIGKRVKTIRRA 314

Query: 257  --PVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPD 314
              P +  LQ E   AVA T+I  +I V      +K   +  M +++   + +  + D+ D
Sbjct: 315  GAPKLSQLQ-EGIEAVATTIIA-HITVSDLQFREKALYIATMTRRVLMTMHNPKMVDDRD 372

Query: 315  SLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNP 374
             + N+ + L G L+++  ++  + +    K  I   ++   +  +F  L +I        
Sbjct: 373  YVGNKRLELAGQLLSLLFEDLFKKFNSDFKANIDKVLKKPSRTSEFDALLSINI-----H 427

Query: 375  SKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLR 434
            S  I   +   + TG  + +      +RAG T    RL+++  +     +   + F   R
Sbjct: 428  SNNITMGMNRAISTGNWSLKRF--KMERAGVTHVLSRLSYISALGMMTRI--SSQFEKSR 483

Query: 435  TTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
              S  R L P  +G LC   TP+GE CGL+ ++     + +         D  ++    L
Sbjct: 484  KVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITT---------DDEELPVKNL 534

Query: 494  RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV--IPSSEIEKVVAHLRRLKVSAASV 551
               +G   I  +             + L+G ++G    P S +++     R  K+SA   
Sbjct: 535  CFTLGCENILEIDSATLHAVTN-FGIYLNGTLIGATRFPVSFVDRFRKLRRSGKISA--- 590

Query: 552  IPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSE---ESQNIELIGPFEQVF 608
                    +V +     +  +++ T   +  RP+  +   ++   ++ +++ +   E  F
Sbjct: 591  --------FVSIYTNSHHRAVHIATDGGRICRPLIIVDAENKSRVKAHHLKKLLSNEWAF 642

Query: 609  MEI------------RCPDGGDGGRRNAFPATHE-----EIHPTGMLSVVANLTPYSDHN 651
             +                D            TH+     EI P  +L  VA L PY  HN
Sbjct: 643  DDFLKHGLVEYLDVNEENDSLIALYEEDLKNTHQEFTHLEIEPFTVLGAVAGLIPYPHHN 702

Query: 652  QSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTN 711
            QSPRN YQC M KQ +G        R D  LY +  PQ P+V+T T      D+ P G N
Sbjct: 703  QSPRNTYQCAMGKQAIGAIGYNQFRRIDTLLYLMVYPQQPMVKTKTIELIDYDKLPAGQN 762

Query: 712  AIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKD 771
            A VAV++Y+GYD+EDA++LNK+S+DRG    Q+ +  TI L    N         R +++
Sbjct: 763  ATVAVMSYSGYDIEDALVLNKASIDRGFGRCQVLRKNTISLKRYPNHTKDIVAGMRVDEN 822

Query: 772  AKSL--HSVIDSDGLPYVGQMIHPGEPYCSIY-------------DKTTNSWRTNSR--- 813
             + +  HS + +DGL  VG  +  G+ Y +               D+   S  ++     
Sbjct: 823  GEPIFSHSSLGTDGLGEVGMQVENGQVYVNKCVPTNAGESVLGSPDQHVQSAESHRETPA 882

Query: 814  --KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDI 871
              KG E  ++D V + + ++     K  +  R TR P +GDKFSSRHGQKGVC  +    
Sbjct: 883  YYKGPEPSYIDQVMMSVGDNDQALIK--VLLRQTRRPELGDKFSSRHGQKGVCGIIVQQE 940

Query: 872  DMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNG 931
            D+PF+   G+ PD+I+NPH FPSRMT+  +LE ++ K G L+G     T F        G
Sbjct: 941  DLPFND-DGITPDIIMNPHGFPSRMTVGKMLELISGKAGVLNGSLEYGTCFG-------G 992

Query: 932  DTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSD 991
                D SK LVD         GFNY G ++LYSG+ G  +   IF GP+YYQ+L+HMV D
Sbjct: 993  SKLEDMSKILVDH--------GFNYSGKDMLYSGITGECMQAYIFFGPIYYQKLKHMVLD 1044

Query: 992  KFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVAD 1051
            K   R+ G    +TRQP +GR R GG+R GEMERD ++A+GA+ LL +RL   SD    D
Sbjct: 1045 KMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMLSSDAFEVD 1104

Query: 1052 VCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLA 1111
            VCS CG +    +                        C +C+++  +  + +PY  + L 
Sbjct: 1105 VCSKCGLMGYNGW------------------------CTSCKSTDSVIKMTIPYAAKLLF 1140

Query: 1112 AELAAMNIKITLQLGD 1127
             EL +MNI   L+LGD
Sbjct: 1141 QELLSMNIAPRLKLGD 1156


>gi|296421900|ref|XP_002840501.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295636719|emb|CAZ84692.1| unnamed protein product [Tuber melanosporum]
          Length = 422

 Score =  407 bits (1047), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 223/478 (46%), Positives = 291/478 (60%), Gaps = 72/478 (15%)

Query: 662  MAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTG 721
            M KQ MG    AL++R+D K+Y LQT QTPIVR+  Y++YG+D +P G NA+VAV++YTG
Sbjct: 1    MGKQAMGTPGTALRYRSDNKIYRLQTGQTPIVRSPLYSEYGLDNFPNGMNAVVAVISYTG 60

Query: 722  YDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDS 781
            YDM+DAMILNKS+ +RG      ++T+ I             K ++R    +    ++D 
Sbjct: 61   YDMDDAMILNKSAHERG------FETKFIF-----------GKAYQRIGIRQDWLRIVDM 103

Query: 782  DGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAV---DMKNSKNLPQKA 838
            DGLP +GQ++  G+    IY            +GSE  ++D V +   +  +SK + Q+ 
Sbjct: 104  DGLPTIGQLVRDGDA-VFIY------------RGSEDAYIDEVRLLGSEGGDSKPM-QEI 149

Query: 839  NIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTI 898
            +I++R  R P IGDKFSSRHGQKGVCSQ WP IDMPF+  +GM+PD+IINPHAFPSRMTI
Sbjct: 150  SIKYRIPRPPNIGDKFSSRHGQKGVCSQKWPSIDMPFT-ESGMQPDIIINPHAFPSRMTI 208

Query: 899  AMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHG 958
             M +ES+A K G+LHG   D+TPF             DE  +  D  G  L+  G+NYHG
Sbjct: 209  GMFVESLAGKSGALHGIAQDSTPFR-----------FDEENTAADYFGHQLKVAGYNYHG 257

Query: 959  VEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGI 1018
             E +YSG+ G EL  +I+IG VYYQRLRHMV+DK+QVR+TG + ++T QPIKGRK+GGGI
Sbjct: 258  NEPMYSGITGEELHADIYIGVVYYQRLRHMVNDKYQVRTTGKISELTHQPIKGRKKGGGI 317

Query: 1019 RFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGL 1078
            R GEMERDSLLAHG A+LL DRL  CSDY    VC  CGS L+                +
Sbjct: 318  RVGEMERDSLLAHGGAFLLQDRLFNCSDYTQTWVCRACGSFLST---------------M 362

Query: 1079 PPARAP---KKVTCHACQTSKG--------METVAMPYVFRYLAAELAAMNIKITLQL 1125
            P  R       V C  C    G           VA+PYV +YL  EL+AM I +   +
Sbjct: 363  PSVRGSSFGSMVRCRRCADGLGGRFVGGKDTTVVAVPYVLKYLDVELSAMGIAMKFNI 420


>gi|410081580|ref|XP_003958369.1| hypothetical protein KAFR_0G02000 [Kazachstania africana CBS 2517]
 gi|372464957|emb|CCF59234.1| hypothetical protein KAFR_0G02000 [Kazachstania africana CBS 2517]
          Length = 1148

 Score =  407 bits (1047), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 339/1194 (28%), Positives = 544/1194 (45%), Gaps = 177/1194 (14%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
            F  ++ LV+ H++SF+Y +D  L ++                                  
Sbjct: 53   FLKVKGLVKQHLDSFNYFVDIDLKKIIKANQTILSDVDPEFYLKYVDIRIGKKSTSSTKD 112

Query: 37   ------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADS 90
                   CR   ++Y+  +  D+E  Y    + ++ +    G+ P+ML++ +C L G D 
Sbjct: 113  YLTPPHECRLRDMTYSAPIYVDIE--YTRGRNIIMHKDVEIGRMPIMLRSNKCTLYGCDE 170

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
             ++  L E   + GGYFI+NG E+V   +++ +Q     ++  +  D ++G    +V   
Sbjct: 171  AEMAKLNECPLDPGGYFIVNGTEKV---ILVQEQLSKNRIIVEA--DEKKGIVQASVTSS 225

Query: 151  C-VRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
               RK ++ V  K     N  + L      +E  +P+ IVLKA    ++LEI   L C  
Sbjct: 226  THERKSKTYVVTK-----NDKIYLKHNSISEE--IPIVIVLKACGVVSELEIM-QLVCGN 277

Query: 210  DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV----IDGLQSE 265
            D  Y+            +   + + E    ++ T+ Q L++IG   + +    +  LQ E
Sbjct: 278  DSSYQ------------DIFAVNIEEASKFNIYTQQQALEYIGAKVKTMRRQKLTVLQ-E 324

Query: 266  SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPG 325
               A+A TVI       LN   +K   +  M +++   + +  + D+ D + N+ + L G
Sbjct: 325  GIEAIATTVIAHLTVEALN-FREKALYMAMMTRRVVMAMHNPKMVDDRDYVGNKRLELAG 383

Query: 326  HLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
             LI++  ++  + +    K  I   ++   +  ++  L +I        S  I + +   
Sbjct: 384  QLISLLFEDLFKKFNSDFKASIDKVLKKPNRAMEYDALLSINV-----HSNNITSGLNRA 438

Query: 386  LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPE 444
            + TG  + +      +RAG T    RL+++  +     +   + F   R  S  R L P 
Sbjct: 439  ISTGNWSLKRFK--MERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRKVSGPRALQPS 494

Query: 445  SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
             +G LC   TP+GE CGL+ ++     + +         D  +     L  ++GV  I  
Sbjct: 495  QFGMLCTADTPEGEACGLVKNLALMTHITT---------DDEEEPIKKLCYVLGVEDI-- 543

Query: 505  LPKLVKSGPPAV-LSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL 563
               L+ S    +  SV L+G ++G   +    K V+H R L+ S            ++ +
Sbjct: 544  --NLIDSASLHLNYSVFLNGTLIG--SARFPRKFVSHFRALRRSCKVS-------AFISI 592

Query: 564  SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQ----NIELIGPFEQVF---MEIRCPDG 616
                    +++ T   +  RP+  I + + ES     +++ +   E VF   +++   + 
Sbjct: 593  HTNSEQKAVHIATDGGRICRPL--IIVTNGESHVKAHHLKRLLEGELVFDDFLKLGLVEY 650

Query: 617  GDGGRRN-AFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQ 665
             D    N +F A          TH EI P  +L  VA L PY  HNQSPRN YQC M KQ
Sbjct: 651  LDVNEENDSFIALYEKDIDQAVTHLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQ 710

Query: 666  TMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDME 725
             +G        R D  LY +  PQ P+V+T T      D+ P G NA VAV++Y+GYD+E
Sbjct: 711  AIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIE 770

Query: 726  DAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSL--HSVIDSDG 783
            DA++LNK+S+DRG    +  +  T  L    N         R ++  + +  H  +  DG
Sbjct: 771  DALVLNKASLDRGFGRCETRRKTTTVLKRYPNHTQDIIGGMRVDEKGEPIWQHKALGPDG 830

Query: 784  LPYVGQMIHPGEPYC--SIYDKTTNSWRTNSRKGSESVFVDYVA--------VDMKNSKN 833
            L  VG  +  G+ Y   S+   +T+++   ++       V Y A        V M  S N
Sbjct: 831  LGEVGMKLDSGQIYINKSVPTNSTDAFNGAAQASYRETPVIYRAPEPSHIDQVMMSVSDN 890

Query: 834  LPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFP 893
                  +  R  R P +GDKFSSRHGQKGVC  +    DMPF+   G+ PD+I+NPH FP
Sbjct: 891  DQALIKVLLRQHRRPELGDKFSSRHGQKGVCGIIVKQEDMPFND-QGVVPDIIMNPHGFP 949

Query: 894  SRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCG 953
            SRMT+  ++E V+ K G L+G     T F        G    D SK LV++        G
Sbjct: 950  SRMTVGKMIELVSGKAGVLNGSLEYGTCFG-------GSKLEDMSKILVEK--------G 994

Query: 954  FNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRK 1013
            FNY G ++LYSG+ G  L   IF GP+YYQ+L+HMV DK   R+ G    +TRQP +GR 
Sbjct: 995  FNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRS 1054

Query: 1014 RGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIR 1073
            R GG+R GEMERD ++A+GA+ LL +RL   SD    DVC+ CG +  + +         
Sbjct: 1055 RDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCAKCGLMGYSGW--------- 1105

Query: 1074 EIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
                           C  C++++ +  + +PY  + L  EL +MNI   L+L D
Sbjct: 1106 ---------------CTTCKSAENVIKMTIPYAAKLLFQELLSMNIAPRLRLED 1144


>gi|380017785|ref|XP_003692825.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Apis florea]
          Length = 1134

 Score =  407 bits (1047), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 328/1131 (29%), Positives = 525/1131 (46%), Gaps = 148/1131 (13%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR   ++Y+  +  D+E  Y+    P+++     G+ P+ML++  C L G    +L  + 
Sbjct: 104  CRLRDLNYSAPITVDIE--YIRGHQPIIKNNLLIGRMPIMLRSSNCVLTGKSHFELAKMN 161

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            E   + GGYFI+NG E+V   +++ +Q     M+R+  R   E  +   +V  C     +
Sbjct: 162  ECPHDPGGYFIVNGQEKV---ILIQEQ-----MLRN--RIILEEDSKGCIVASC-----N 206

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYL---LPVGIVLKALVDTNDLEIFNHLTCCYDEKYK 214
            SVT +     N   R G +          +PV I+ KA+   +D EI   +    +E++ 
Sbjct: 207  SVTHERKTKTNIVGRAGRYYMRHNIFQDDIPVTIIFKAMGIVSDQEIMQLIGT--EEEFM 264

Query: 215  KEKGAVGSPLVSE-RVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAET 273
            K+     +P + E  V  + A+ Q L   +     +   + +  +   +  E   A+A  
Sbjct: 265  KK----FAPSLEECHVLNVFAQNQALRFLSN----KRKQKRYSVIKSSITDEMKDALATN 316

Query: 274  VIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLK 333
            ++     +  N    K   +  M++K+        + D+ D   N+ + L G L+++  +
Sbjct: 317  ILSHVPVIDFNFKM-KATYIALMIRKVMKAQSDGKLVDDRDYYGNKRLELAGSLLSLMFE 375

Query: 334  EKLEDWLRKGKKLIQDEIEN-NGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLA 392
            +  + +  + K++    I      +FD      I K M ++   QI   +   + +G   
Sbjct: 376  DLFKRFNWELKQIADKNIPKIKAAQFD------IVKHMRQD---QITNGLAFAISSGNWT 426

Query: 393  TQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPESWGFLCP 451
             +      +R G T    RL+++  +     V+  + F   R  S  R L P  WG LCP
Sbjct: 427  IKRFK--MERHGVTQVLSRLSYISALGMMTRVN--SQFEKTRKVSGPRSLQPSQWGMLCP 482

Query: 452  VHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKS 511
              TP+GE CGL+ ++     + +  D    IR    +    + +L G  +          
Sbjct: 483  SDTPEGEGCGLVKNLALMTHITTEIDEEPIIRLAFNLGVENVNILGGEEI---------- 532

Query: 512  GPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPG 571
                V  V L+G ++G++ +   +++V   R L+          L  G+V +     +  
Sbjct: 533  NNKNVYMVFLNGNILGIVKN--YQRLVNVFRLLRRKG-------LINGFVSIYTQHQHRC 583

Query: 572  LYLFTSPPKFVRP---VRNISLPSEESQNIEL----IGPFEQVFMEIRCPDGGDGGRRN- 623
            + + +   +  RP   V+N   P  + ++I+L    I  FE  F++    +  D    N 
Sbjct: 584  IQISSDGGRLCRPYIIVQN-GDPLVQEEHIKLLEQGIRSFED-FLQDGLIEYLDVNEEND 641

Query: 624  ---AF-------PATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQA 673
               AF         TH EI P  +L V A L PY  HNQSPRN YQC M KQ MG     
Sbjct: 642  SSIAFNESHINEKTTHLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQCAMGKQAMGTIGYN 701

Query: 674  LKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKS 733
             + R D  +Y+L  PQTP+V++ T      D+ P G NA +AV++Y+GYD+EDA+ILNK+
Sbjct: 702  QRNRIDTLMYNLVYPQTPMVKSRTIELINFDKLPAGQNATIAVMSYSGYDIEDALILNKA 761

Query: 734  SVDRGMCHGQIYQTETIDLSDDGNKV-DR--GQKLFRRNKDAKSLHSVIDSDGLPYVGQ- 789
            S+DRG     +Y+     L    N+  DR  G  +    K +   H +IDSDG+   G+ 
Sbjct: 762  SIDRGFGRCLVYRNAKCTLKRYANQTYDRIMGPLIDGNTKKSVWKHEIIDSDGIAAPGEM 821

Query: 790  ------MIHPGEPYCSIYDKTTNSWRTNSR--------KGSESVFVDYVAVDMKNSKNLP 835
                  M++   P  +I    + + +T +         KG    +++ V +         
Sbjct: 822  VENRKVMVNKSSPAANIGPVNSGNVQTQTEYKDVPVVFKGPVPAYIEKVMISSNAEDAFL 881

Query: 836  QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSR 895
             K  +  R TR P IGDKFSSRHGQKGV   +    DMPF+   G+ PD+I+NPH FPSR
Sbjct: 882  IK--LLLRQTRRPEIGDKFSSRHGQKGVVGLIVEQEDMPFNDY-GICPDMIMNPHGFPSR 938

Query: 896  MTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFN 955
            MT+  L+E +A K G + G+F   T F  S                V+++   L   GFN
Sbjct: 939  MTVGKLIELLAGKAGVIKGEFHYGTAFGGSK---------------VEDVCSELVKHGFN 983

Query: 956  YHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRG 1015
            Y G +  YSG+ G  L   I+ GPVYYQ+L+HMV DK   R+ G    +TRQP  GR + 
Sbjct: 984  YLGKDFFYSGITGEPLQAYIYSGPVYYQKLKHMVQDKMHARARGPRAVLTRQPTGGRAKE 1043

Query: 1016 GGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREI 1075
            GG+R GEMERD L+ +GA+ +L +RL   SD    DVC+ CG +  + +           
Sbjct: 1044 GGLRLGEMERDCLIGYGASMMLIERLMISSDAFDIDVCNKCGLMAYSGW----------- 1092

Query: 1076 GGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI--KITLQ 1124
                         CH+C++S  + T++MPY  + L  EL +MNI  ++TL+
Sbjct: 1093 -------------CHSCRSSSCVSTISMPYACKLLFQELQSMNIVPRLTLK 1130


>gi|448100132|ref|XP_004199280.1| Piso0_002709 [Millerozyma farinosa CBS 7064]
 gi|359380702|emb|CCE82943.1| Piso0_002709 [Millerozyma farinosa CBS 7064]
          Length = 1158

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 341/1217 (28%), Positives = 538/1217 (44%), Gaps = 206/1217 (16%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
            F  ++ LV+ H++SF+Y +D  L ++                                  
Sbjct: 48   FLKVKGLVKQHLDSFNYFVDVDLKKIIKANELVLSDVDPEFYLKYLDIRVGHKSSSPPGT 107

Query: 37   --------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGA 88
                     CR   ++Y+  +  DVE  Y      ++ +    G+ P+ML++ +C L G 
Sbjct: 108  KEVNLAPHECRLRDLTYSAPIYVDVE--YTRGRKIIMHKDLEIGRMPIMLRSNKCILDGI 165

Query: 89   DSQKLVSLKEEAAEMGGYFILNGLERVF-------RSVILPKQNYPMSMVRSSFRDRREG 141
            D  K+    E   + GGYFI+NG E+V        ++ I+ + +   ++V++S       
Sbjct: 166  DEHKMAQYDECPLDPGGYFIVNGTEKVILVQEQLSKNRIIVEADEKKNIVQASVTSSTHE 225

Query: 142  YTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEI 201
               K  VI   + D+        YL + S+            +P+ IVLKA   T+DLEI
Sbjct: 226  RKSKTYVI--TKNDK-------IYLKHNSIAED---------VPIVIVLKAAGITSDLEI 267

Query: 202  FNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ----- 256
               L C  D  Y+            +   +   E   L + T+ Q L +IG+  +     
Sbjct: 268  L-QLVCGQDPNYQ------------DLFAVNFEEAARLEVLTQQQALNYIGKRVKTIRRA 314

Query: 257  --PVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPD 314
              P +  LQ E   AVA T+I  +I V      +K   +  M +++   + +  + D+ D
Sbjct: 315  GAPKLSQLQ-EGIEAVATTIIA-HITVSDLQFREKALYIATMTRRVLMTMHNPKMVDDRD 372

Query: 315  SLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNP 374
             + N+ + L G L+++  ++  + +    K  I   ++   +  +F  L +I        
Sbjct: 373  YVGNKRLELAGQLLSLLFEDLFKKFNSDFKANIDKVLKKPSRTSEFDALLSINI-----H 427

Query: 375  SKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLR 434
            S  I   +   + TG  + +      +RAG T    RL+++  +     +   + F   R
Sbjct: 428  SNNITMGMNRAISTGNWSLKRF--KMERAGVTHVLSRLSYISALGMMTRI--SSQFEKSR 483

Query: 435  TTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
              S  R L P  +G LC   TP+GE CGL+ ++     + +         D  ++    L
Sbjct: 484  KVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITT---------DDEELPVKNL 534

Query: 494  RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV--IPSSEIEKVVAHLRRLKVSAASV 551
               +G   I  +             V L+G ++G    P S +++     R  K+SA   
Sbjct: 535  CFTLGCENILEIDSATLHAVTN-FGVYLNGTLIGATRFPVSFVDRFRKLRRSGKISA--- 590

Query: 552  IPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSE---ESQNIELIGPFEQVF 608
                    +V +     +  +++ T   +  RP+  +   ++   ++ +++ +   E  F
Sbjct: 591  --------FVSIYTNSHHRAVHIATDGGRICRPLIIVDAENKSRVKAHHLKKLLSNEWAF 642

Query: 609  MEI------------RCPDGGDGGRRNAFPATHE-----EIHPTGMLSVVANLTPYSDHN 651
             +                D            TH+     EI P  +L  VA L PY  HN
Sbjct: 643  DDFLKHGLVEYLDVNEENDSLIALYEEDLKNTHQEFTHLEIEPFTVLGAVAGLIPYPHHN 702

Query: 652  QSPRNMYQCQMAKQTMGFSVQALKF-RADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGT 710
            QSPRN YQC M KQ +G ++   +F R D  LY +  PQ P+V+T T      D+ P G 
Sbjct: 703  QSPRNTYQCAMGKQAIG-AIGYNQFRRIDTLLYLMVYPQQPMVKTKTIELIDYDKLPAGQ 761

Query: 711  NAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFR--R 768
            NA VAV++Y+GYD+EDA++LNK+S+DRG    Q+ +  TI L    N         R   
Sbjct: 762  NATVAVMSYSGYDIEDALVLNKASIDRGFGRCQVLRKNTISLKRYPNHTKDIVAGMRVDE 821

Query: 769  NKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIY-------------DKTTNSWRTNSR-- 813
            N D    HS + +DGL  VG  +  G+ Y +               D+   S  ++    
Sbjct: 822  NGDPIFSHSSLGTDGLGEVGMQVENGQVYVNKCVPTNAGESVLGSPDQHVQSAESHRETP 881

Query: 814  ---KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPD 870
               KG E  +VD V + + ++     K  +  R TR P +GDKFSSRHGQKGVC  +   
Sbjct: 882  AYYKGPEPSYVDQVMMSVGDNDQALIK--VLLRQTRRPELGDKFSSRHGQKGVCGIIVQQ 939

Query: 871  IDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTN 930
             D+PF+   G+ PD+I+NPH FPSRMT+  +LE ++ K G L+G     T F        
Sbjct: 940  EDLPFND-DGISPDIIMNPHGFPSRMTVGKMLELISGKAGVLNGSLEYGTCFG------- 991

Query: 931  GDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVS 990
            G    D SK LVD         GFNY G ++LYSG+ G  +   IF GP+YYQ+L+HMV 
Sbjct: 992  GSKLEDMSKILVDH--------GFNYSGKDMLYSGITGECMQAYIFFGPIYYQKLKHMVL 1043

Query: 991  DKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVA 1050
            DK   R+ G    +TRQP +GR R GG+R GEMERD ++A+GA+ LL +RL   SD    
Sbjct: 1044 DKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMLSSDAFEV 1103

Query: 1051 DVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYL 1110
            DVCS CG +    +                        C +C+++  +  + +PY  + L
Sbjct: 1104 DVCSKCGLMGYNGW------------------------CTSCKSTDSVIKMTIPYAAKLL 1139

Query: 1111 AAELAAMNIKITLQLGD 1127
              EL +MNI   L+LGD
Sbjct: 1140 FQELLSMNIAPRLKLGD 1156


>gi|350420099|ref|XP_003492398.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Bombus
            impatiens]
          Length = 1130

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 328/1134 (28%), Positives = 524/1134 (46%), Gaps = 154/1134 (13%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR   ++Y+  +  D+E  Y+    P+++     G+ P+ML++  C L G    +L  + 
Sbjct: 100  CRLRDLNYSAPITVDIE--YIRGHQPIIKNNLLIGRMPIMLRSSNCVLTGKSHFELSKMN 157

Query: 98   EEAAEMGGYFILNGLERV-------FRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            E   + GGYFI+NG E+V        R+ I+ +++    +V S      E  T   +V +
Sbjct: 158  ECPHDPGGYFIVNGQEKVILIQEQMLRNRIILEEDSKGCIVASCNSSTHERKTKTNIVGK 217

Query: 151  CVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYD 210
              R          YY+ +   +           +PV I+ KA+   +D EI   +    +
Sbjct: 218  AGR----------YYMRHNIFQDD---------IPVTIIFKAMGIVSDQEIMQLIGT--E 256

Query: 211  EKYKKEKGAVGSPLVSE-RVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
            E++ K+     +P + E  V  + A+ Q L   +  +      +    VI    ++    
Sbjct: 257  EEFMKK----FAPTLEECHVLNVFAQNQALRFLSNKR-----KQKRYSVIKASVTDEMKD 307

Query: 270  VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
            +  T I  ++ V   +   K   +  M++K+        + D+ D   N+ + L G L++
Sbjct: 308  ILATNILSHVPVIDFNFKMKATYIALMIRKVMKAQSDGKLIDDRDYYGNKRLELAGSLLS 367

Query: 330  IYLKEKLEDWLRKGKKLIQDEIEN-NGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKT 388
            +  ++  + +  + K++    I      +FD      I K M ++   QI   +   + +
Sbjct: 368  LMFEDLFKRFNWELKQIADKNIPKIKAAQFD------IVKHMRQD---QITNGLAFAISS 418

Query: 389  GRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPESWG 447
            G    +      +R G T    RL+++  +     V+  + F   R  S  R L P  WG
Sbjct: 419  GNWTIKRFK--MERHGVTQVLSRLSYISALGMMTRVN--SQFEKTRKVSGPRSLQPSQWG 474

Query: 448  FLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPK 507
             LCP  TP+GE CGL+ ++     + +  D    +R    +    + +L G  +      
Sbjct: 475  MLCPSDTPEGEGCGLVKNLALMTHITTEIDEEPIVRLAFNLGVENVNILGGEEI------ 528

Query: 508  LVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGG 567
                    V  V L+G ++G++ +   +++V   R L+          L  G+V +    
Sbjct: 529  ----NNKKVYMVFLNGNILGIVKN--YQRLVNVFRLLRRKG-------LINGFVSIHTQH 575

Query: 568  AYPGLYLFTSPPKFVRP---VRNISLPSEESQNIEL----IGPFEQVFME--IRCPDGGD 618
             +  + + +   +  RP   V+N + P  + ++I+L    I  FE    E  I   D  +
Sbjct: 576  QHRCIQISSDGGRLCRPYIIVQNGN-PLIQEKHIKLLEQGIRSFEDFLQEGLIEYLDVNE 634

Query: 619  GGRRN-AF-------PATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFS 670
                + AF         TH EI P  +L V A L PY  HNQSPRN YQC M KQ MG  
Sbjct: 635  ENDSSIAFNESHINEKTTHLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQCAMGKQAMGTI 694

Query: 671  VQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMIL 730
                + R D  +Y+L  PQTP+V++ T      D+ P G NA VAV++Y+GYD+EDA+IL
Sbjct: 695  GYNQRNRIDTLMYNLVYPQTPMVKSRTIELINFDKLPAGQNATVAVMSYSGYDIEDALIL 754

Query: 731  NKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR--GQKLFRRNKDAKSLHSVIDSDGLPYV 787
            NK+S+DRG     IY+     L    N+  DR  G  +    K     H +IDSDG+   
Sbjct: 755  NKASIDRGFGRCLIYRNAKCTLKRYANQTYDRIMGPLIDSNTKKPVWKHDIIDSDGIAAP 814

Query: 788  GQ-------MIHPGEPYCSIYDKTTNSWRTNSR--------KGSESVFVDYVAVDMKNSK 832
            G+       M++   P  +I      + +T +         KG    +V+ V +      
Sbjct: 815  GEMVENRKVMVNKSSPAANIGPVNAGNVQTQTEYKDVPVVFKGPVPAYVEKVMISSNAED 874

Query: 833  NLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAF 892
                K  +  R TR P IGDKFSSRHGQKGV   +    DMPF+   G+ PD+I+NPH F
Sbjct: 875  AFLIK--LLLRQTRRPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDY-GICPDMIMNPHGF 931

Query: 893  PSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTC 952
            PSRMT+  L+E +A K G + G+F   T F           G  + K + +EL +     
Sbjct: 932  PSRMTVGKLIELLAGKAGVIKGEFHYGTAF-----------GGSKVKDVCNELVKH---- 976

Query: 953  GFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGR 1012
            G+NY G ++ YSG+ G  L   I+ GPVYYQ+L+HMV DK   R+ G    +TRQP +GR
Sbjct: 977  GYNYLGKDIFYSGITGEPLQAYIYSGPVYYQKLKHMVQDKMHARARGPRAVLTRQPTEGR 1036

Query: 1013 KRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAI 1072
             + GG+R GEMERD L+ +GA+ +L +RL   SD    DVC+ CG +  + +        
Sbjct: 1037 AKEGGLRLGEMERDCLIGYGASMMLIERLMISSDAFDVDVCNKCGLMAYSGW-------- 1088

Query: 1073 REIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI--KITLQ 1124
                            CH+C++S  + T++MPY  + L  EL +MNI  ++TL+
Sbjct: 1089 ----------------CHSCRSSSCVSTISMPYACKLLFQELQSMNIVPRLTLK 1126


>gi|363756358|ref|XP_003648395.1| hypothetical protein Ecym_8300 [Eremothecium cymbalariae DBVPG#7215]
 gi|356891595|gb|AET41578.1| Hypothetical protein Ecym_8300 [Eremothecium cymbalariae DBVPG#7215]
          Length = 1141

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 339/1195 (28%), Positives = 536/1195 (44%), Gaps = 180/1195 (15%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
            F  ++ LV+ H++SF+Y +D  L ++                                  
Sbjct: 47   FLKVKGLVKQHLDSFNYFVDVDLKKIIKANEMVLSDVDPEFYLKYVDIRVGQRSNSSRID 106

Query: 37   -----HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQ 91
                  CR   ++Y+  +  D+E  Y      V+ +    G+ P+ML++ +C L GA  +
Sbjct: 107  MLPPHECRLRDMTYSAPIYVDIE--YTRGRLIVLHKDVEIGKMPIMLRSNKCILNGASEE 164

Query: 92   KLVSLKEEAAEMGGYFILNGLERVF-------RSVILPKQNYPMSMVRSSFRDRREGYTD 144
             +  L E   + GGYFI+NG E+V        ++ I+ + +   S+V++S          
Sbjct: 165  TMAKLNECPLDPGGYFIVNGTEKVILVQEQLSKNRIIVEADEKKSIVQASVTSSTHERKS 224

Query: 145  KAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNH 204
            K  V+    K          YL + S+        +E  +P+ IVLKA    +DLEI   
Sbjct: 225  KTYVVTKNEK---------IYLKHNSI-------SEE--VPIVIVLKACGVVSDLEIM-Q 265

Query: 205  LTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV----ID 260
            L C  +  Y+            +   I   E   +++ T+ Q L++IG   + +    + 
Sbjct: 266  LVCGNNSSYQ------------DIFAINFEEASKMNIYTQQQALEYIGTKVKTIRRQKLT 313

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQE 320
             LQ E   A+A TVI  ++ V   D  +K   +  M +++   + +  + D+ D + N+ 
Sbjct: 314  ILQ-EGIEAIATTVIA-HLTVEALDFREKALYIAIMTRRVVMAIQNCKMVDDRDYVGNKR 371

Query: 321  ILLPGHLITIYLKEKLEDWLRKGKKLIQDEIE--NNGKKFDFFNLANIKKVMEKNPSKQI 378
            + L G L+++  ++  + +    K  I   ++  N  + +D     N+        S  I
Sbjct: 372  LELAGQLMSLLFEDLFKKFNNDFKASIDKVLKKPNRAEMYDALLSINVH-------SNNI 424

Query: 379  GTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS- 437
             + +   + TG  + +      +RAG T    RL+++  +     +   + F   R  S 
Sbjct: 425  TSGLNRAISTGNWSLKRFK--MERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRKVSG 480

Query: 438  VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLI 497
             R L P  +G LC   TP+GE CGL+ ++     + +  D    I+     R   L  + 
Sbjct: 481  PRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTD-DEEEPIK-----RLCYLLGVE 534

Query: 498  GVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVI--PSSEIEKVVAHLRRLKVSAASVIPDD 555
             +G+I S       G      V L+G ++G    P+  + +     R  K+S    I  +
Sbjct: 535  DIGLIDSASLHDNYG------VYLNGTIIGTARYPTKFVHQFRILRRTGKISEFISIYTN 588

Query: 556  LEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPD 615
            +    V +   G          P   V+  +++   S   + ++    F+  F+++   +
Sbjct: 589  IHQNAVHIVTDGGR-----ICRPLIIVKNGKSMVASSHLKRLLDGKLQFDD-FLKLGLVE 642

Query: 616  GGDGGRRN-AFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAK 664
              D    N +F A          TH EI P  +L  VA L PY  HNQSPRN YQC M K
Sbjct: 643  YLDVNEENDSFIALYEKDIHEGITHLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGK 702

Query: 665  QTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDM 724
            Q +G        R D  LY +  PQ P+V+T T      D+ P G NA VAV++Y+GYD+
Sbjct: 703  QAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDI 762

Query: 725  EDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSL--HSVIDSD 782
            EDA++LNKSS+DRG    +  +  T  L    N         R +++ + +  H  +  D
Sbjct: 763  EDALVLNKSSIDRGFGRCETRKKTTTILKRYPNHTQDIIGGMRVDENGEPIWQHKSLGPD 822

Query: 783  GLPYVGQMIHPGEPYC--SIYDKTTNSWRTNSRKGSESVFVDYVA--------VDMKNSK 832
            GL  VG  +  G+ Y   S+    ++S  T S+       + Y A        V M  S 
Sbjct: 823  GLGEVGMKVESGQIYINKSVPTNASDSVLTQSQSQYREAPIIYRAPEPSHIDQVMMSVSD 882

Query: 833  NLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAF 892
            N      +  R  R P +GDKFSSRHGQKGVC  +    DMPF+   G+ PD+I+NPH F
Sbjct: 883  NDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVQQEDMPFND-QGICPDIIMNPHGF 941

Query: 893  PSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTC 952
            PSRMT+  ++E V+ K G L+G     T F  S               L D + E+L   
Sbjct: 942  PSRMTVGKMIELVSGKAGVLNGTLEYGTCFGGS--------------KLAD-MSEILINN 986

Query: 953  GFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGR 1012
            GFNY G ++LYSG+ G  L   +F GP+YYQ+L+HMV DK   R+ G    +TRQP +GR
Sbjct: 987  GFNYSGKDMLYSGITGECLQAYVFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 1046

Query: 1013 KRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAI 1072
             R GG+R GEMERD ++A+GA+ LL +RL   SD    DVC  CG +  + +        
Sbjct: 1047 SRDGGLRLGEMERDCVIAYGASQLLLERLMLSSDAFEVDVCDKCGLMGYSGW-------- 1098

Query: 1073 REIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
                            C +C++++ +  + +PY  + L  EL +MNI   L LGD
Sbjct: 1099 ----------------CTSCKSAEHVIKITIPYAAKLLFQELLSMNIAPRLMLGD 1137


>gi|255721739|ref|XP_002545804.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Candida
            tropicalis MYA-3404]
 gi|240136293|gb|EER35846.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Candida
            tropicalis MYA-3404]
          Length = 1159

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 334/1166 (28%), Positives = 519/1166 (44%), Gaps = 202/1166 (17%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRER-FNFGQFPVMLKTRRCHLQGADSQKLVSL 96
            CR   ++Y+  +  DVE+     G  ++R      G+ PVML++ +C L+G     +  +
Sbjct: 118  CRLRDLTYSAPIYVDVEYT---RGRKIIRHNDLEIGRMPVMLRSNKCMLEGMSEASMAQV 174

Query: 97   KEEAAEMGGYFILNGLERVF-------RSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
            +E   + GGYF++NG E+V        ++ I+ + +   ++V++S          K  VI
Sbjct: 175  EECPLDPGGYFVVNGTEKVILVQEQLSKNRIIVEADEKKAIVQASVTSSTHERKSKTYVI 234

Query: 150  RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
               + D+        YL + SV            +P+ I+LKA   T+DLEI   L C  
Sbjct: 235  --TKNDK-------IYLKHNSVSED---------IPIVIILKAAGITSDLEIL-QLVCGT 275

Query: 210  DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ-------PVIDGL 262
            D  Y+            +   +   E   L + T+ Q L ++G+  +       P +  L
Sbjct: 276  DPNYQ------------DLFVVNFEEAAKLEVFTQQQALLYVGKRVKTIRRAGAPKLSQL 323

Query: 263  QSESYYAVAETVIRDYIFVHLNDNNDKFN----LLIFMLQKLFSLVDHTSVSDNPDSLQN 318
            Q E   A+A T++      HL  ++ +F      +  M +++   + +  + D+ D + N
Sbjct: 324  Q-EGIEAIATTIV-----AHLTVSDLQFREKALYIATMARRVVMAMHNPKMVDDRDYVGN 377

Query: 319  QEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQI 378
            + + L G L+++  ++  + +    K  I   ++   +  +F  L +I        S  I
Sbjct: 378  KRLELAGQLMSLLFEDLFKKFNSDFKANIDKVLKKPSRTSEFDALLSINI-----HSNNI 432

Query: 379  GTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS- 437
               +   + TG  + +      +RAG T    RL+++  +     +   + F   R  S 
Sbjct: 433  TMGLNRAISTGNWSLKRFK--MERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRKVSG 488

Query: 438  VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLI 497
             R L P  +G LC   TP+GE CGL+ ++     + +         D  +     L + +
Sbjct: 489  PRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITT---------DDEEAPVKKLCIAL 539

Query: 498  GVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV--IPSSEIEKVVAHLRRL-KVSAASVIPD 554
            G   I +L             V L+G ++G    P   +     HLRR  KVSA      
Sbjct: 540  GCEPIYALDSATLHSE-GNFGVYLNGTLIGTTRFPQKFVNDF-RHLRRNGKVSA------ 591

Query: 555  DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEES------------------- 595
                 ++ +     +  +++ T   +  RP+  I + + ES                   
Sbjct: 592  -----FISIYTNTHHQAVHIATDGGRICRPL--IIVENGESKVTAEHLAKLLNQEWSFDD 644

Query: 596  --------------QNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVV 641
                          +N  LI  +E+           D    ++   TH EI P  +L  V
Sbjct: 645  FLKHGLVEYLDVNEENDSLIALYEE-----------DINANSSTTVTHMEIEPFTVLGAV 693

Query: 642  ANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKY 701
            A L PY  HNQSPRN YQC M KQ +G        R D  LY +  PQ P+V+T T    
Sbjct: 694  AGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFRRIDTLLYFMVYPQQPMVKTKTIELI 753

Query: 702  GIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDR 761
              D+ P G NA VAV++Y+GYD+EDA++LNKSS+DRG    Q+ +  T+ L    N    
Sbjct: 754  DYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSLDRGFGRCQVVRKNTVQLKKYPNHTQD 813

Query: 762  GQKLFRRNKDAKSL--HSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSW----------R 809
                 R +++   +  H  +  DGL  VG  IH G+ + +    T +            R
Sbjct: 814  ILSGMRVDENNNPIFPHQALGPDGLGEVGSRIHNGQVFANKCVPTNSGESALGGPQQDDR 873

Query: 810  TNSR--------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQK 861
               R        KG E  ++D V   M  S N      +  R TR P +GDKFSSRHGQK
Sbjct: 874  QMDRHREAPAFYKGPEPSYIDQVM--MSVSDNDQALIKVLLRQTRRPELGDKFSSRHGQK 931

Query: 862  GVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATP 921
            GVC  +    DMPF+   G+ PD+I+NPH FPSRMT+  ++E ++ K G L+G     T 
Sbjct: 932  GVCGIIVQQEDMPFNDY-GISPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGSLEYGTC 990

Query: 922  FANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVY 981
            F        G    D SK LV++        GF+Y G ++L SG+ G  L   IF GP+Y
Sbjct: 991  FG-------GSKLEDMSKILVEK--------GFSYSGKDMLQSGITGECLQAYIFFGPIY 1035

Query: 982  YQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRL 1041
            YQ+L+HMV DK   R+ G    +TRQP +GR R GG+R GEMERD ++A+GA+ LL +RL
Sbjct: 1036 YQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERL 1095

Query: 1042 HTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETV 1101
               SD    DVC+ CG +    +                        C  CQ+S+ +  +
Sbjct: 1096 MISSDAFEVDVCNKCGLMGYNNW------------------------CTTCQSSENVIKM 1131

Query: 1102 AMPYVFRYLAAELAAMNIKITLQLGD 1127
             +PY  + L  EL +MNI   L+LGD
Sbjct: 1132 TIPYAAKLLFQELLSMNIAPRLRLGD 1157


>gi|340720183|ref|XP_003398521.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Bombus
            terrestris]
          Length = 1128

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 328/1137 (28%), Positives = 521/1137 (45%), Gaps = 160/1137 (14%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR   ++Y+  +  D+E  Y+    P+++     G+ P+ML++  C L G    +L  + 
Sbjct: 98   CRLRDLNYSAPITVDIE--YIRGHQPIIKNNLLIGRMPIMLRSSNCVLTGKSHFELSKMN 155

Query: 98   EEAAEMGGYFILNGLERV-------FRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            E   + GGYFI+NG E+V        R+ I+ +++    +V S      E  T   +V +
Sbjct: 156  ECPHDPGGYFIVNGQEKVILIQEQMLRNRIILEEDSKGCIVASCNSSTHERKTKTNIVGK 215

Query: 151  CVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYD 210
              R          YY+ +   +           +PV I+ KA+   +D EI   +    +
Sbjct: 216  GGR----------YYMRHNIFQDD---------IPVTIIFKAMGIVSDQEIMQLIGT--E 254

Query: 211  EKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ----PVIDGLQSES 266
            E++ K+                L E   L++  + Q L+ +    +     VI    ++ 
Sbjct: 255  EEFMKKFAPT------------LEECHVLNVFAQNQALRFLSNKRKQKRYSVIKSSVTDE 302

Query: 267  YYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGH 326
               +  T I  ++ V   +   K   +  M++K+        + D+ D   N+ + L G 
Sbjct: 303  MKDILATNILSHVPVIDFNFKMKATYIALMIRKVMKAQSDGKLVDDRDYYGNKRLELAGS 362

Query: 327  LITIYLKEKLEDWLRKGKKLIQDEIEN-NGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
            L+++  ++  + +  + K++    I      +FD      I K M ++   QI   +   
Sbjct: 363  LLSLMFEDLFKRFNWELKQIADKNIPKIKAAQFD------IVKHMRQD---QITNGLAFA 413

Query: 386  LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPE 444
            + +G    +      +R G T    RL+++  +     V+  + F   R  S  R L P 
Sbjct: 414  ISSGNWTIKRFK--MERHGVTQVLSRLSYISALGMMTRVN--SQFEKTRKVSGPRSLQPS 469

Query: 445  SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
             WG LCP  TP+GE CGL+ ++     + +  D    +R    +    + +L G  +   
Sbjct: 470  QWGMLCPSDTPEGEGCGLVKNLALMTHITTEIDEEPIVRLAFNLGVENVNILGGEEI--- 526

Query: 505  LPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS 564
                       V  V L+G ++G++ +   +++V   R L+          L  G+V + 
Sbjct: 527  -------NNKKVYMVFLNGNILGIVKN--YQRLVNVFRLLRRKG-------LINGFVSIH 570

Query: 565  LGGAYPGLYLFTSPPKFVRP---VRNISLPSEESQNIEL----IGPFEQVFME--IRCPD 615
                +  + + +   +  RP   V+N + P  +  +I+L    I  FE    E  I   D
Sbjct: 571  TQHQHRCIQISSDGGRLCRPYIIVQNGN-PLIQENHIKLLEQGIRSFEDFLQEGLIEYLD 629

Query: 616  GGDGGRRN-AF-------PATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTM 667
              +    + AF         TH EI P  +L V A L PY  HNQSPRN YQC M KQ M
Sbjct: 630  VNEENDSSIAFNESHINEKTTHLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQCAMGKQAM 689

Query: 668  GFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDA 727
            G      + R D  +Y+L  PQTP+V++ T      D+ P G NA VAV++Y+GYD+EDA
Sbjct: 690  GTIGYNQRNRIDTLMYNLVYPQTPMVKSRTIELINFDKLPAGQNATVAVMSYSGYDIEDA 749

Query: 728  MILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR--GQKLFRRNKDAKSLHSVIDSDGL 784
            +ILNK+S+DRG     IY+     L    N+  DR  G  +    K     H +IDSDG+
Sbjct: 750  LILNKASIDRGFGRCLIYRNAKCTLKRYANQTYDRIMGPLIDSNTKKPVWKHDIIDSDGI 809

Query: 785  PYVGQ-------MIHPGEPYCSIYDKTTNSWRTNSR--------KGSESVFVDYVAVDMK 829
               G+       M++   P  +I      + +T +         KG    +V+ V +   
Sbjct: 810  AAPGEMVENRKVMVNKSSPAANIGPVNAGNVQTQTEYKDVPVVFKGPVPAYVEKVMISSN 869

Query: 830  NSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINP 889
                   K  +  R TR P IGDKFSSRHGQKGV   +    DMPF+   G+ PD+I+NP
Sbjct: 870  AEDAFLIK--LLLRQTRRPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDY-GICPDMIMNP 926

Query: 890  HAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEML 949
            H FPSRMT+  L+E +A K G + G+F   T F           G  + K + +EL +  
Sbjct: 927  HGFPSRMTVGKLIELLAGKAGVIKGEFHYGTAF-----------GGSKVKDVCNELVKH- 974

Query: 950  RTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPI 1009
               G+NY G ++ YSG+ G  L   I+ GPVYYQ+L+HMV DK   RS G    +TRQP 
Sbjct: 975  ---GYNYLGKDIFYSGITGEPLQAYIYSGPVYYQKLKHMVQDKMHARSRGPRAVLTRQPT 1031

Query: 1010 KGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQK 1069
            +GR + GG+R GEMERD L+ +GA+ +L +RL   SD    DVC+ CG +  + +     
Sbjct: 1032 EGRAKEGGLRLGEMERDCLIGYGASMMLIERLMISSDAFDVDVCNKCGLMAYSGW----- 1086

Query: 1070 RAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI--KITLQ 1124
                               CH+C++S  + T++MPY  + L  EL +MNI  ++TL+
Sbjct: 1087 -------------------CHSCRSSSCVSTISMPYACKLLFQELQSMNIVPRLTLK 1124


>gi|194753345|ref|XP_001958974.1| GF12287 [Drosophila ananassae]
 gi|190620272|gb|EDV35796.1| GF12287 [Drosophila ananassae]
          Length = 1137

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 331/1153 (28%), Positives = 509/1153 (44%), Gaps = 189/1153 (16%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR    +Y+  +  D+E  Y      + R     G+ P+ML+   C L G    +L  L 
Sbjct: 110  CRLRDTTYSAPITVDIE--YTRGTQRIKRNNLLIGRMPLMLRCSNCVLTGKSEFELSKLN 167

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC----VR 153
            E   + GGYF++ G E+V   +++ +Q     M+   F            V++C      
Sbjct: 168  ECPLDPGGYFVVRGQEKV---ILIQEQLSWNKMLTEDFNG----------VVQCQVTSST 214

Query: 154  KDQSSVTLKL-----YYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
             ++ S TL +     YYL + S+            +P+ ++ KAL   +D EI  H+   
Sbjct: 215  HEKKSRTLVISKHGKYYLKHNSMTDD---------IPIVVIFKALGVVSDQEIMAHIGI- 264

Query: 209  YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYY 268
             D K +   GA             L E  +L + T+ + L ++G     V+   QS +  
Sbjct: 265  -DSKSQNRFGAS------------LLEAFNLKVFTQQRALDYMGSKL--VVKRFQSATTK 309

Query: 269  AVAET---VIRDYIFVHLNDNNDKFNL----LIFMLQKLFSLVDHTSVSDNPDSLQNQEI 321
              AE    ++   I  H+  +N  F +    +  M++++ +     ++ D+ D   N+ +
Sbjct: 310  TPAEEARELLLTTILAHVPVDNFNFQMKAIYVSMMVRRVMAAELDKTLFDDRDYYGNKRL 369

Query: 322  LLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTS 381
             L G LI++      ED  ++    ++   + N  K        +K +     + QI   
Sbjct: 370  ELAGSLISLMF----EDLFKRMNWELKTIADKNIPKVKAAQFDVVKHMR----AAQITAG 421

Query: 382  IETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRK 440
            +E+ + +G    +      +RAG T    RL+++  +     V+  + F   R  S  R 
Sbjct: 422  LESAISSGNWTIKRFK--MERAGVTQVLSRLSYISALGMMTRVN--SQFEKTRKVSGPRS 477

Query: 441  LLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVG 500
            L P  WG LCP  TP+GE CGL+ ++     + +  + +            +L    GV 
Sbjct: 478  LQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVEEKP---------VMVLAFNAGVE 528

Query: 501  MIPSLPKLVKSGP---PAVLSVLLDGRVVGV-IPSSEIEKVVAHLRRLKVSAASVIPDDL 556
             I    + V   P   P V  V ++G V+G+ +    + K + ++RR     +       
Sbjct: 529  DI----REVSGNPINNPNVFLVFINGNVLGLTLNHRHLVKNLRYMRRKGRMGS------- 577

Query: 557  EVGYVPLSLGGAYPGLYLFTSPPKFVRP---VRNISLPSEESQNIEL---IGPFEQVFME 610
               YV +        +Y+ T   +  RP   V       ++    EL   I  F+   ++
Sbjct: 578  ---YVSVHTSYTQRCIYIHTDGGRLCRPYIIVEKCRPLVKQHHLDELNRGIRKFDDFLLD 634

Query: 611  IRCPDGGDGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQC 660
                        ++F A          TH EI P  +L V A L PY  HNQSPRN YQC
Sbjct: 635  GLIEYLDVNEENDSFIAWNEEHIEERTTHLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQC 694

Query: 661  QMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYT 720
             M KQ MG      K R D  +Y+L  PQ P+V++ T      D+ P G NA VAV++Y+
Sbjct: 695  AMGKQAMGMIGYNQKNRIDSLMYNLVYPQAPMVKSKTIELTNFDKLPAGQNATVAVMSYS 754

Query: 721  GYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DRGQKLFRRNKDAKSL--HS 777
            GYD+EDA+ILNK+S+DRG     +Y+     +    N+  DR     +     K +  H 
Sbjct: 755  GYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDRIMGPVKDALTNKVIFKHD 814

Query: 778  VIDSDGLPYVGQMIH-----------------------PGEPYCSIYDKTTNSWRTNSRK 814
            V+D+DG+   G+M+                        P  PY ++           S K
Sbjct: 815  VLDTDGIVAPGEMVQNKQIMINKEMPAVTSMNPLDGQSPQVPYTAV---------PISYK 865

Query: 815  GSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMP 874
            G E  +++ V V     ++   K  I  R TR P IGDKFSSRHGQKGV   +    DMP
Sbjct: 866  GPEPSYIERVMVSANAEEDFLIK--ILLRQTRIPEIGDKFSSRHGQKGVTGLIVEQEDMP 923

Query: 875  FSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTG 934
            ++ + G+ PD+I+NPH FPSRMT+   LE +  K G L GKF   T F  S         
Sbjct: 924  YNDL-GICPDMIMNPHGFPSRMTVGKTLELLGGKAGVLEGKFHYGTAFGGSK-------- 974

Query: 935  TDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQ 994
                   V ++   L   GFNY G +  YSG+ G  L   I+ GPVYYQ+L+HMV DK  
Sbjct: 975  -------VQDIQAELERHGFNYMGKDFFYSGITGAPLEAYIYSGPVYYQKLKHMVQDKMH 1027

Query: 995  VRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCS 1054
             R+ G    +TRQP +GR R GG+R GEMERD L+++GA+ L+ +RL   SD    DVC 
Sbjct: 1028 ARARGPKAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMISSDAFEVDVCR 1087

Query: 1055 LCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAEL 1114
             CG +   ++                        CH CQ+S  +  ++MPY  + L  EL
Sbjct: 1088 TCGRLAYCSW------------------------CHFCQSSAYVSKISMPYACKLLFQEL 1123

Query: 1115 AAMNIKITLQLGD 1127
             +MN+   + L D
Sbjct: 1124 TSMNVVPKMILED 1136


>gi|255569145|ref|XP_002525541.1| DNA-directed RNA polymerase III subunit, putative [Ricinus communis]
 gi|223535120|gb|EEF36800.1| DNA-directed RNA polymerase III subunit, putative [Ricinus communis]
          Length = 1139

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 349/1209 (28%), Positives = 550/1209 (45%), Gaps = 200/1209 (16%)

Query: 8    DFEPLRELVRHHIESFDYMLDEGL------------------------------SEMFD- 36
            +F  +R LV+ H++SF+Y ++ G+                              S++ D 
Sbjct: 43   EFLKVRGLVKQHLDSFNYFVNIGIKKIVRANDRIVSTVDPGIYLRFKDVRIGTPSDIMDG 102

Query: 37   --------HCRQAKISYTGKLMADVEFQY--LDAGSPVVRERFNFGQFPVMLKTRRCHLQ 86
                     CR +  +Y   ++ +VE+ Y   D  + V +     G+ P+ML++R C L 
Sbjct: 103  VSEQLSPHMCRLSDKTYAAPILVNVEYIYGSHDQKTRVEKNDVVIGRMPIMLRSRSCVLY 162

Query: 87   GADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKA 146
            G D  +L  L E   + GGYF++ G E+V   +++ +Q   +S  R      ++G  + +
Sbjct: 163  GKDEAELARLGECPLDPGGYFVIKGTEKV---ILIQEQ---LSKNRIIIDTDKKGNINAS 216

Query: 147  VVIRC-VRKDQSSVTL---KLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIF 202
            V       K ++ + +   K+Y  LN  V+           +P+ +V+KA+   +D E+ 
Sbjct: 217  VTSSTEATKSKTIIQMEKEKMYLCLNQFVK----------KIPIMVVIKAMGMESDQEVV 266

Query: 203  NHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGL 262
              +    D +Y        S L+   ++    E   LS+ T+ + L++        +DG 
Sbjct: 267  QMVG--RDPRY--------SALLLPSIE----ECAGLSIYTQQKALEY--------LDGK 304

Query: 263  QSESYYAVAETVIRDYIF----VHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQN 318
            ++      A T++RD       VH N+   K   +  ML+++   + +    D+ D + N
Sbjct: 305  ENR-----ALTILRDVFLANVPVHKNNFRPKCLYVAVMLRRMMEAMLNKDAMDDKDYVGN 359

Query: 319  QEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQI 378
            + + L G LI++  ++  +  + + ++ I D +     +   F+LA  + ++  N    I
Sbjct: 360  KRLELSGQLISLLFEDLFKTMITEVQRTI-DTVLTKQNRSSRFDLA--QYIVRDN----I 412

Query: 379  GTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS- 437
               +E  L TG    +       R G T    RL+++  +     V     F   R  S 
Sbjct: 413  TNGLERTLSTGNFDVKRF--KMHRKGMTQVLVRLSYIASLGMMTRV--SPQFEKSRKVSG 468

Query: 438  VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLI 497
             R L P  WG LCP  TP+GE CGL+ ++     V +  D  G +          L   +
Sbjct: 469  PRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTT-DDEEGPLIS--------LCYCL 519

Query: 498  GVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLE 557
            GV  +  L       P + L V+ +G ++G       +  V  +R+L+ +         +
Sbjct: 520  GVEDLELLSGEELHTPNSFL-VIFNGLILG--KHRRPQYFVNSMRKLRRAG--------K 568

Query: 558  VG-YVPLSLGGAYPGLYLFTSPPKFVRPV----RNISLPSEESQNIEL---IGPFEQVFM 609
            +G +V + +      +YL +   +  RP+    R +S   E     EL   +  F+    
Sbjct: 569  IGEFVSVFVNEKQRAVYLASDGGRVCRPLVIADRGVSRIKEHHMK-ELRDGVRTFDDFLR 627

Query: 610  EIRCPDGGDGGRRNAFPATHE----------EIHPTGMLSVVANLTPYSDHNQSPRNMYQ 659
            +            NA  A +E          EI P  +L V A L P+  HNQSPRN YQ
Sbjct: 628  DGLIEYLDVNEENNALVALYEGEATPETTHIEIEPFTILGVCAGLIPFPHHNQSPRNTYQ 687

Query: 660  CQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAY 719
            C M KQ MG       FR D  LY L  PQ P++ T T    G D+   G NA VAV++Y
Sbjct: 688  CAMGKQAMGNIAYNQLFRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSY 747

Query: 720  TGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVDRGQKLFRRNKDAKSLHSV 778
            +GYD+EDA+++NK+S+DRG     + +    I    +    DR   + R ++  +    V
Sbjct: 748  SGYDIEDAIVMNKASLDRGFGRCIVMKKYPAIRQKYENGASDR---ILRPDRTVER-ERV 803

Query: 779  IDSDGLPYVGQMIHPGEPY----CSIYDKTTNSWRTN-------------SRKG--SESV 819
            +D DGL   G++I P + Y    C I   T    +++             S KG   ES 
Sbjct: 804  LDYDGLAAPGEIIKPSDIYVKKECPI--DTMGPVKSSAALENIKYRPSPLSYKGPEGESP 861

Query: 820  FVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVT 879
             +D VA+    + NL  K  I  RHTR P +GDKFSSRHGQKGVC  +    D PFS   
Sbjct: 862  VIDRVALSSDRNNNLCIKVMI--RHTRRPEVGDKFSSRHGQKGVCGTIIQQEDFPFSE-R 918

Query: 880  GMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESK 939
            G+ PDLI+NPH FPSRMT+  ++E +  K G   G+F   + F       + DT      
Sbjct: 919  GICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEP--SGHADT------ 970

Query: 940  SLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTG 999
              V+ + E L   GF+Y+G +++YSG+ G  L   IF+GP+YYQ+L+HMV DK   R  G
Sbjct: 971  --VEAISETLVNRGFSYNGKDIIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGNG 1028

Query: 1000 TMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSV 1059
                +TRQP +GR R GG+R GEMERD L+A+GA+ L+ +RL   SD     VC +CG  
Sbjct: 1029 PRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMISSDPFEVQVCRVCG-- 1086

Query: 1060 LTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
            L   F    +  I                C  C+    + T+ +PY  + L  EL +MNI
Sbjct: 1087 LLGYFNQKLRAGI----------------CSTCKNGDNISTMKLPYACKLLIQELQSMNI 1130

Query: 1120 KITLQLGDG 1128
               L+L + 
Sbjct: 1131 VPRLKLAEA 1139


>gi|357610728|gb|EHJ67119.1| hypothetical protein KGM_22531 [Danaus plexippus]
          Length = 1085

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 336/1151 (29%), Positives = 510/1151 (44%), Gaps = 206/1151 (17%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVV-RERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
            CR   ++Y+  +  D+E  Y+     V+ + +   G+ P+ML++  C L      +L  L
Sbjct: 74   CRLRDMTYSAPITVDIE--YIRGNQRVIFKNKQLIGRMPLMLRSSNCVLTNKSDFELAQL 131

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
             E   + GGYFI+ G E+V   +++ +Q     M+   F+         A+  +      
Sbjct: 132  NECPHDPGGYFIIRGQEKV---ILIQEQLSRNRMIVDEFKG--------AIQCQVTSSTH 180

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
               T  +  + NG   L       +  +P+ +V KA+   +D EI               
Sbjct: 181  EKKTRTIVIVKNGKYVLRHNALSDD--IPICVVFKAMGICSDQEIMQ------------- 225

Query: 217  KGAVGSP-LVSERVKIILAEVQDLSLTTRLQCLQHIG-----EHFQPVIDGLQSESYYAV 270
               VG+   +++++   + +  +L + T+ Q L +IG     + FQ      ++      
Sbjct: 226  --LVGTDDAIAKKMAPCIMDCHNLKVFTQNQALAYIGSKLKVKRFQSATSKFRTP--VDE 281

Query: 271  AETVIRDYIFVHLNDNNDKFNL----LIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGH 326
            A  +I   I  H+   N  F +    L  M++++     + +  D+PD   N+ + L G 
Sbjct: 282  ARDLIATTILAHVVVENYNFYVKAIYLAIMVKRVIEAETNKAAIDDPDYYGNKRLELAGS 341

Query: 327  LITIYLKE--KLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKV-MEKNPSKQIGTSIE 383
            L+ +  ++  K  +W  K    I D+I    K   F     IK+  ME++   Q+     
Sbjct: 342  LLALMFEDLFKRFNWELKS---IADKIIPRVKAAPFDGNWTIKRFKMERHGVTQV----- 393

Query: 384  TMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLP 443
                  RL+  + L +  R     +  R                      + +  R L P
Sbjct: 394  ----LSRLSYISALGMMTRVNSQFEKTR----------------------KVSGPRSLQP 427

Query: 444  ESWGFLCPVHTPDGEPCGL------LNHMTSTCRVASYYDSRGNI-RDFSKMRTSILRVL 496
              WG LCP  TP+GE CGL      + H+T+ C       S G I R         +R+L
Sbjct: 428  SQWGMLCPSDTPEGEACGLVKNLALMTHITTEC-------SEGPISRLACNAGVEDVRLL 480

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDL 556
             G  +            PA+  V L+G ++GV  + E +K++   R  +          L
Sbjct: 481  GGEEI----------NHPALYMVFLNGNILGV--TREYKKLIKIFRMFRRRG-------L 521

Query: 557  EVGYVPLSLGGAYPGLYLFTSPPKFVRP--VRNISLPSEESQNI-EL---IGPFEQVFME 610
               +V +        +Y+ +   +  RP  +    LP  +  +I EL   I  F Q F+ 
Sbjct: 522  ISAFVSIYPNHNQRTVYICSDGGRLCRPYIIVEKGLPLVQQHHINELNRGIRKF-QDFLN 580

Query: 611  IRCPDGGDGGRRN------------AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMY 658
                +  D    N             +  TH EI P  +L V A L PY  HNQSPRN Y
Sbjct: 581  DGLIEYLDVNEENDSHIATVETEIDPYVTTHLEIEPFTILGVCAGLVPYPHHNQSPRNTY 640

Query: 659  QCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLA 718
            QC M KQ MG      K R D  +Y+L  PQ P+V+T T      D+ P G NA VAV++
Sbjct: 641  QCAMGKQAMGTIGYNQKNRIDTLMYNLVYPQCPMVKTRTIELTNFDKLPAGQNATVAVMS 700

Query: 719  YTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKS---- 774
            Y+GYD+EDA+ILN++S+DRG     +Y++    +    N+     ++   ++DA +    
Sbjct: 701  YSGYDIEDALILNRASIDRGYGRCLVYKSAKTIMKRYSNQT--SDRILGPSRDANTGKVI 758

Query: 775  -LHSVIDSDGLPYVGQM-------------------IHPGEPYCSIYDKTTNSWRTNSRK 814
              H V+DSDG+   G+M                   I+ G+P    Y     ++     K
Sbjct: 759  KAHEVLDSDGIAAPGEMVENRQVLINKQMPPATLNPINQGQPQQIDYKDVPITY-----K 813

Query: 815  GSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMP 874
            G    +++ V V   +      K  I  R TR P IGDKFSSRHGQKGV   +    DMP
Sbjct: 814  GPVESYIEKVMVSSNSEDAFLIK--ILLRQTRIPEIGDKFSSRHGQKGVTGLIVQQEDMP 871

Query: 875  FSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTG 934
            F+   G+ PD+I+NPH FPSRMT+   +E +A K G + GKF   T F  S         
Sbjct: 872  FND-RGICPDMIMNPHGFPSRMTVGKTIELLAGKAGLMEGKFHYGTAFGGSK-------- 922

Query: 935  TDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQ 994
                   V ++ + L   G+NYHG ++ YSG+ G  L   I+ GPVYYQ+L+HMV DK  
Sbjct: 923  -------VRDVCQELEKHGYNYHGKDIFYSGITGEPLEAYIYSGPVYYQKLKHMVQDKMH 975

Query: 995  VRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCS 1054
             R+ G    +TRQP +GR R GG+R GEMERD L+ +GA+ LL +RL   SD   AD+CS
Sbjct: 976  ARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLMERLMLASDAFSADICS 1035

Query: 1055 LCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAEL 1114
             CG                        R   +  CHAC++S  +  V MPY  + L  EL
Sbjct: 1036 SCG------------------------RLASRAWCHACRSS-AVSAVDMPYACKLLFQEL 1070

Query: 1115 AAMNIKITLQL 1125
            A+MNI   L+L
Sbjct: 1071 ASMNIVPRLKL 1081


>gi|195381659|ref|XP_002049565.1| GJ20682 [Drosophila virilis]
 gi|194144362|gb|EDW60758.1| GJ20682 [Drosophila virilis]
          Length = 1137

 Score =  404 bits (1039), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 339/1140 (29%), Positives = 517/1140 (45%), Gaps = 179/1140 (15%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR    +Y+  +  D+E  Y      + R     G+ P+ML+   C L G    +L  L 
Sbjct: 110  CRLRDTTYSAPISVDIE--YTRGTQRIKRNNLLIGRMPLMLRCSNCVLTGKSEFELSKLN 167

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC----VR 153
            E   + GGYF++ G E+V   +++ +Q     M+   F            V++C      
Sbjct: 168  ECPLDPGGYFVVRGQEKV---ILIQEQLSWNKMLTEDFNG----------VVQCQVTSST 214

Query: 154  KDQSSVTLKL-----YYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
             ++ S TL L     YYL + S+            +P+ ++ KAL   +D EI +H+   
Sbjct: 215  HEKKSRTLVLSKHGKYYLKHNSMTDD---------IPIVVIFKALGVVSDQEIMSHIGL- 264

Query: 209  YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIG-----EHFQPVIDGLQ 263
             D + +   GA             L E  +L + T+ + L ++G     + FQ   +   
Sbjct: 265  -DARSQNRFGAS------------LLEAFNLKVFTQQRALDYMGSKLVVKRFQSATNKTP 311

Query: 264  SESYYAVAETVIRDYIFVHLNDNNDKFNL----LIFMLQKLFSLVDHTSVSDNPDSLQNQ 319
            SE     A  ++   I  H+  +N  F +    +  M++++ +     ++ D+ D   N+
Sbjct: 312  SEE----ARELLLTTILAHVPVDNFNFQMKAIYVSLMVRRVMAAELDKTLFDDRDYYGNK 367

Query: 320  EILLPGHLITIYLKE--KLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQ 377
             + L G LI++  ++  K  +W     K+I D+     K   F        V++   + Q
Sbjct: 368  RLELAGSLISLMFEDLFKRMNW---ELKMIADKNIPKVKAAQF-------DVVKHMRAAQ 417

Query: 378  IGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS 437
            I   +E+ + +G    +      +RAG T    RL+++  +     V+  + F   R  S
Sbjct: 418  ITVGLESAISSGNWTIKRFK--MERAGVTQVLSRLSYISALGMMTRVN--SQFEKTRKVS 473

Query: 438  -VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R L P  WG LCP  TP+GE CGL+ ++     + +  D R             L   
Sbjct: 474  GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVDERP---------VMTLAYN 524

Query: 497  IGVGMIPSLPKLVKSGP---PAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIP 553
             GV  I    + V   P   P V  V ++G V+G+  +     +V +LR ++        
Sbjct: 525  AGVEDI----REVSGNPINNPHVFLVFINGNVLGLTINHR--HLVHNLRYMRRKG----- 573

Query: 554  DDLEVG-YVPLSLGGAYPGLYLFTSPPKFVRP--VRNISLPSEESQNI-ELIGPFEQV-- 607
                +G +V +        +++ T   +  RP  +   S P  + +++ EL+    +   
Sbjct: 574  ---RMGSFVSIHTSYTQRCIFIHTDGGRLCRPYIIVEKSRPLVQQRHLDELLRGVRKFDD 630

Query: 608  FMEIRCPDGGDGGRRN-AFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRN 656
            F+     +  D    N +F A          TH EI P  +L V A L PY  HNQSPRN
Sbjct: 631  FLHDGLIEYLDVNEENDSFIAWNEEHIEPHTTHLEIEPFTLLGVCAGLVPYPHHNQSPRN 690

Query: 657  MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
             YQC M KQ MG      K R D  +Y+L  PQ P+V++ T      D+ P G NA VAV
Sbjct: 691  TYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPQAPMVKSRTIELTNFDKLPAGQNATVAV 750

Query: 717  LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DRGQKLFRRNKDAKSL 775
            ++Y+GYD+EDA+ILNK+S+DRG     +Y+     +    N+  DR     +     K +
Sbjct: 751  MSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDRIMGPVKDALTNKVI 810

Query: 776  --HSVIDSDGLPYVGQ-------MIHPGEP-YCSIYDKTTNSWRTN------SRKGSESV 819
              H V+D+DG+   G+       MI+   P   SI      S +        S KG E  
Sbjct: 811  FKHDVLDTDGIVAPGEQVLNKQIMINKEMPAVTSINPLEGQSAQVPYTAVPISYKGPEPS 870

Query: 820  FVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVT 879
            +++ V V     ++   K  I  R TR P IGDKFSSRHGQKGV   +    DMPF+   
Sbjct: 871  YIERVMVSANAEEDFLIK--ILLRQTRIPEIGDKFSSRHGQKGVTGLIVDQEDMPFNDF- 927

Query: 880  GMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESK 939
            G+ PD+I+NPH FPSRMT+   LE +  K G L GKF   T F  S              
Sbjct: 928  GICPDMIMNPHGFPSRMTVGKTLELLGGKAGVLEGKFHYGTAFGGS-------------- 973

Query: 940  SLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTG 999
               D   E++R  GFNY G ++ YSG+ G  L   I+ GPVYYQ+L+HMV DK   R+ G
Sbjct: 974  KAADVQAELVRH-GFNYMGKDLFYSGITGAPLEAYIYSGPVYYQKLKHMVQDKMHARARG 1032

Query: 1000 TMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSV 1059
                +TRQP +GR R GG+R GEMERD L+++GA+ L+ +RL   SD    DVC  CG +
Sbjct: 1033 PKAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMISSDAFEVDVCRTCGRL 1092

Query: 1060 LTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
               ++                        CH CQ+S  +  ++MPY  + L  EL +MN+
Sbjct: 1093 AYCSW------------------------CHFCQSSAHVSKISMPYACKLLFQELTSMNV 1128


>gi|195123595|ref|XP_002006289.1| GI20961 [Drosophila mojavensis]
 gi|193911357|gb|EDW10224.1| GI20961 [Drosophila mojavensis]
          Length = 1136

 Score =  404 bits (1038), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 335/1139 (29%), Positives = 509/1139 (44%), Gaps = 178/1139 (15%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR    +Y+  +  D+E  Y      + R     G+ P+ML+   C L G    +L  L 
Sbjct: 110  CRLRDTTYSAPISVDIE--YTRGTQRIKRNNLLIGRMPLMLRCSNCVLTGKSEFELSKLN 167

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC----VR 153
            E   + GGYF++ G E+V   +++ +Q     M+   F            V++C      
Sbjct: 168  ECPLDPGGYFVVRGQEKV---ILIQEQLSWNKMLTEDFNG----------VVQCQVTSST 214

Query: 154  KDQSSVTLKL-----YYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
             ++ S TL L     YYL + S+            +P+ ++ KAL   +D EI  H+   
Sbjct: 215  HEKKSRTLVLSKHGKYYLKHNSMTDD---------IPIVVIFKALGVVSDQEIMAHIGL- 264

Query: 209  YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIG-----EHFQPVIDGLQ 263
             D + +   GA             L E  +L + T+ + L ++G     + FQ       
Sbjct: 265  -DARSQNRFGAS------------LLEAFNLKIFTQQRALDYMGSKLVVKRFQSATTKTP 311

Query: 264  SESYYAVAETVIRDYIFVHLNDNNDKFNL----LIFMLQKLFSLVDHTSVSDNPDSLQNQ 319
            SE     A  ++   I  H+  +N  F +    +  M++++ +     ++ D+ D   N+
Sbjct: 312  SEE----ARELLLTTILAHVPVDNFNFQMKAIYVSLMVRRVMAAELDKTLFDDRDYYGNK 367

Query: 320  EILLPGHLITIYLKE--KLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQ 377
             + L G LI++  ++  K  +W     K+I D+     K   F        V++   + Q
Sbjct: 368  RLELAGSLISLMFEDLFKRMNW---ELKMIADKNIPKVKAAQF-------DVVKHMRAAQ 417

Query: 378  IGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS 437
            I   +E+ + +G    +      +RAG T    RL+++  +     V+  + F   R  S
Sbjct: 418  ITAGLESAISSGNWTIKRFK--MERAGVTQVLSRLSYISALGMMTRVN--SQFEKTRKVS 473

Query: 438  -VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R L P  WG LCP  TP+GE CGL+ ++     + +  D R             L   
Sbjct: 474  GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVDERP---------VMTLAYN 524

Query: 497  IGVGMIPSLPKLVKSGP---PAVLSVLLDGRVVGV-IPSSEIEKVVAHLRRLKVSAASVI 552
             GV  I    + V   P   P V  V ++G V+G+ I    + + + ++RR     +   
Sbjct: 525  AGVEDI----REVSGNPINNPHVFLVFINGNVLGLTINQRHLVRNLRYMRRKGRMGS--- 577

Query: 553  PDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP---VRNISLPSEESQNIELIGPFEQV-- 607
                   +V +        +++ T   +  RP   V N     ++    EL+    +   
Sbjct: 578  -------FVSIHTSYTQRCIFIHTDGGRLCRPYIIVENQRPLVQQRHLDELMRGVRKFDD 630

Query: 608  FMEIRCPDGGDGGRRN-AFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRN 656
            F+     +  D    N +F A          TH EI P  +L V A L PY  HNQSPRN
Sbjct: 631  FLHDGLIEYLDVNEENDSFIAWNEEQLEPHTTHLEIEPFTLLGVCAGLVPYPHHNQSPRN 690

Query: 657  MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
             YQC M KQ MG      K R D  +Y+L  PQ P+V++ T      D+ P G NA VAV
Sbjct: 691  TYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPQAPMVKSRTIELTNFDKLPAGQNATVAV 750

Query: 717  LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DRGQKLFRRNKDAKSL 775
            ++Y+GYD+EDA+ILNK+S+DRG     +Y+     +    N+  DR     +     K +
Sbjct: 751  MSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDRIMGPVKDALTNKVI 810

Query: 776  --HSVIDSDGLPYVGQ-------MIHPGEPYCSIYDKTTNSWRTN------SRKGSESVF 820
              H V+D+DG+   G+       MI+   P  +  +      +        S KG E  +
Sbjct: 811  FKHDVLDTDGIVAPGEQVQNKQIMINKEMPAVTSINPLEGQSQVPYTAVPISYKGPEPSY 870

Query: 821  VDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTG 880
            ++ V V     ++   K  I  R TR P IGDKFSSRHGQKGV   +    DMPF+   G
Sbjct: 871  IERVMVSANAEEDFLIK--ILLRQTRIPEIGDKFSSRHGQKGVTGLIVDQEDMPFNDF-G 927

Query: 881  MRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKS 940
            + PD+I+NPH FPSRMT+   LE +  K G L GKF   T F  S               
Sbjct: 928  ICPDMIMNPHGFPSRMTVGKTLELLGGKAGVLEGKFHYGTAFGGS--------------K 973

Query: 941  LVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGT 1000
              D   E++R  GFNY G +  YSG+ G  L   I+ GPVYYQ+L+HMV DK   R+ G 
Sbjct: 974  AADVQAELVRH-GFNYMGKDFFYSGITGAPLEAYIYSGPVYYQKLKHMVQDKMHARARGP 1032

Query: 1001 MDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVL 1060
               +TRQP +GR R GG+R GEMERD L+++GA+ L+ +RL   SD    DVC  CG + 
Sbjct: 1033 KAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMISSDAFEVDVCRTCGRLA 1092

Query: 1061 TATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
              ++                        CH CQ+S  +  ++MPY  + L  EL +MN+
Sbjct: 1093 YCSW------------------------CHFCQSSAHVSKISMPYACKLLFQELTSMNV 1127


>gi|213402277|ref|XP_002171911.1| DNA-directed RNA polymerase III subunit RPC2 [Schizosaccharomyces
            japonicus yFS275]
 gi|211999958|gb|EEB05618.1| DNA-directed RNA polymerase III subunit RPC2 [Schizosaccharomyces
            japonicus yFS275]
          Length = 1160

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 335/1139 (29%), Positives = 517/1139 (45%), Gaps = 152/1139 (13%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRER-FNFGQFPVMLKTRRCHLQGADSQKLVSL 96
            CR   ++Y   +  D+E+     G  VVR R    G+ PVML++ +C L G   ++L +L
Sbjct: 121  CRLRDLTYGANIFVDIEYT---RGRQVVRRRNVPIGRMPVMLRSNKCVLYGKSEKELAAL 177

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
             E   + GGYF++ G E+V    IL ++    + +       +E +          RK +
Sbjct: 178  NECPLDPGGYFVVKGTEKV----ILVQEQLSKNRIIVEAEPSKEMWQASVTSSTHERKSK 233

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
            + V  K     NG  RL          +P+ I LKA+   +D EIF  L    +  Y+  
Sbjct: 234  TYVVTK-----NG--RLYMKHNSVNEDIPIVIALKAMGLQSDREIF-ELVAGSEANYQD- 284

Query: 217  KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDG------LQSESYYAV 270
               + +P V E  K        L++ T  Q L +IG H +              E+   +
Sbjct: 285  ---LFAPSVEEAAK--------LNVYTTEQALNYIGSHVKVNRRAGAARLPPHEEALEVL 333

Query: 271  AETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITI 330
            A  V+     V+L+       + +   + L ++VD + V D  D + N+ + L G L+ +
Sbjct: 334  AAVVLAHISVVNLDFRPKAVYVAMMARRVLMAMVDPSQVDDR-DYVGNKRLELAGQLLAL 392

Query: 331  YLKEKLEDWLRKGKKLIQDEI---ENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLK 387
             L E L        KL  D++    N  ++FD +N  ++           I   +   L 
Sbjct: 393  -LFEDLFKKFNSDLKLNIDKVLKKPNRTQEFDAYNQLSMH-------GDHITQGMVRALS 444

Query: 388  TGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPESW 446
            TG  + +      +RAG T    RL+F+  +     +   + F   R  S  R L P  +
Sbjct: 445  TGNWSLKRFK--MERAGVTHVLSRLSFISALGMMTRI--TSQFEKTRKVSGPRSLQPSQF 500

Query: 447  GFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLP 506
            G LC   TP+GE CGL+ ++     + +  +    IR         +  + G  ++    
Sbjct: 501  GMLCTSDTPEGEACGLVKNLALMTHITTDEEEGPLIRLAYAFGVEDVHTVTGREILAQDS 560

Query: 507  KLVKSGPPAVLSVLLDGRVVGVI--PSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS 564
             LV           ++G ++G+   PS    + V+  RRL+ S   + P      +V + 
Sbjct: 561  YLV----------YINGSILGITRYPS----RFVSCFRRLRRSG-RISP------FVGIF 599

Query: 565  LGGAYPGLYLFTSPPKFVRP--VRNISLPSEESQNIELIGPFEQVF---MEIRCPDGGDG 619
            +      +++     +  RP  V    LP   +++I  +   E VF   ++    +  D 
Sbjct: 600  INEHQRAVFISADGGRICRPLIVVENGLPRVTNEHIRKLKNGEMVFEDFLKAGYVEYVDV 659

Query: 620  GRRN-----------AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMG 668
               N           A   TH EI P  +L  VA + PY  HNQSPRN YQC M KQ +G
Sbjct: 660  NEENDSLIAVYEKDIAPDTTHLEIEPFTILGAVAGVIPYPHHNQSPRNTYQCAMGKQAIG 719

Query: 669  FSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAM 728
                    R D  LY +  PQ P+V+T T    G D+ P G NA+VA+++Y+GYD+EDA+
Sbjct: 720  AIGYNQLQRIDTLLYLMVYPQQPMVKTKTIELIGYDKLPAGQNAMVAIMSYSGYDIEDAL 779

Query: 729  ILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DRGQKLFRRNKDAKSL--HSVIDSDGLP 785
            +LNK+S+DRG    Q++   +  +    N   DR     R  ++ K +  H +++ DGL 
Sbjct: 780  VLNKASLDRGFGRCQVFHKHSAIIRKYPNGTHDRIGDPQRDPENGKVIWKHKILEDDGLA 839

Query: 786  YVGQMIHPGEPYCSIY---------------DKTTNSWRTN--SRKGSESVFVDYVAVDM 828
             VG  +  G+ Y +                   T + +R    + K  E  ++D V   +
Sbjct: 840  GVGCQVQSGQVYINKQTPTNALDNTIALGQPQTTESGYRATPMTYKAPEPAYIDKVM--L 897

Query: 829  KNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIIN 888
             NS        +  R TR P +GDKFSSRHGQKGVC  +    DMPF+ + G+ PD+I+N
Sbjct: 898  TNSDADQTLVKVLTRQTRRPELGDKFSSRHGQKGVCGVIIQQEDMPFNDI-GICPDIIMN 956

Query: 889  PHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEM 948
            PH FPSRMT+  ++E ++ K G L G     T F  S                V+++  +
Sbjct: 957  PHGFPSRMTVGKMIELLSGKAGVLRGTLEYGTCFGGS---------------RVEDMSRI 1001

Query: 949  LRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQP 1008
            L   G+NY G ++L SG+ G +L   IF GP+YYQ+L+HMV DK   R+ G    +TRQP
Sbjct: 1002 LVEHGYNYSGKDMLTSGITGEQLEAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQP 1061

Query: 1009 IKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQ 1068
             +GR R GG+R GEMERD L+A+GA+ LL +RL   SD    DVC  CG +         
Sbjct: 1062 TEGRSRDGGLRLGEMERDCLIAYGASQLLLERLMLSSDAFEVDVCENCGLL--------- 1112

Query: 1069 KRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
                             K  C++C++SK +  + +PY  + L  EL +MNI   L L D
Sbjct: 1113 ---------------GYKGWCNSCESSKHVVKMTIPYAAKLLFQELMSMNIIPRLALED 1156


>gi|430811324|emb|CCJ31247.1| unnamed protein product [Pneumocystis jirovecii]
          Length = 1167

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 311/1138 (27%), Positives = 517/1138 (45%), Gaps = 147/1138 (12%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRER-FNFGQFPVMLKTRRCHLQGADSQKLVS 95
             CR   ++Y+  +M D+E+     G  VVR +    G+ P+ML++ +C L      +++ 
Sbjct: 128  ECRLRDLTYSAPIMVDIEYT---RGKQVVRRKGVQIGRLPIMLRSNKCILFNKTETQIIR 184

Query: 96   LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
            + E   + GGYFI+ G E+V   +++ +Q     ++  +  + ++G   +A VI    + 
Sbjct: 185  MNECPLDPGGYFIVKGTEKV---ILVQEQLSKNRIIVEA--EPKKGLV-QASVISSTHER 238

Query: 156  QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
            +S       Y+L  + ++          +P+ ++ KA+   +D EI   +          
Sbjct: 239  KSKT-----YVLTKNAKIYLKHNSIAEDVPIVLIFKAMGFQSDQEILELI---------- 283

Query: 216  EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQ-------SESYY 268
               A   P   +   I + E   L + T+ Q L+++G   +      +       SE   
Sbjct: 284  ---AGSDPNYQDMFAINIEECAKLKIYTQQQALEYLGARVKISRKNSELSQRRPPSEEAL 340

Query: 269  AVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
             V   ++  +I V   +   K      M +++   + +  + D+ D + N+ + L G L+
Sbjct: 341  EVLAAIVLAHIPVENLNFRPKIIYFAIMTRRVLMAIKNPKMVDDRDYVGNKRLELAGQLL 400

Query: 329  TIYLKEKLEDWLRKGKKLIQDEIE--NNGKKFDFFNLANIKKVMEKNPSKQIGTSIETML 386
            ++  ++  + + R  K  I   ++  N  ++FD +N  +I           I + +   +
Sbjct: 401  SLLFEDLFKTFNRNLKLNIDKVLKKPNRTQEFDAYNQISIH-------GDHITSGMIRAI 453

Query: 387  KTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPES 445
             TG  + +      +RAG T    RL+++  +     +   + F   R  S  R L P  
Sbjct: 454  STGNWSLKRFK--MERAGVTHVLSRLSYISALGMMTRI--SSQFEKTRKISGPRALQPSQ 509

Query: 446  WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
            +G LCP  TP+GE CGL+ ++     + +  D              I ++   +G     
Sbjct: 510  FGMLCPSDTPEGESCGLIKNLALMTHITTDNDEE-----------PIEKLAFVLGTEEKD 558

Query: 506  PKLVKSG---PPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVP 562
              L+       P    + L+G ++G+     I   V++ R+L+      I +     ++ 
Sbjct: 559  ISLITGHELYAPGTYVIYLNGIILGITRFPTI--FVSNFRKLRRKGQ--ISE-----FIS 609

Query: 563  LSLGGAYPGLYLFTSPPKFVRPVRNISLPSEE--SQNIELIGPFEQVFME---------I 611
            + +   Y  +++ +   +  RP+  +     +  SQ++E +   +  F +         +
Sbjct: 610  IHINHHYSSVHIASDGGRICRPLIIVENGKSKVTSQHLEALKAGKMTFDDFLKRGLVEYL 669

Query: 612  RCPDGGDG-----GRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQT 666
               +  D        + +   TH EI P  +L  VA L PY  HNQSPRN YQC M KQ 
Sbjct: 670  DVNEENDSYISIYENKISESTTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQA 729

Query: 667  MGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMED 726
            +G        R D  LY +  PQ P+V+T T    G D+ P G NAI+AV++++GYD+ED
Sbjct: 730  IGAIAWNQLLRIDSLLYLMIYPQQPLVKTKTIDLIGYDKLPAGQNAIIAVMSFSGYDIED 789

Query: 727  AMILNKSSVDRGMCHGQIYQTETIDLSDDGN-KVDRGQKLFRRNKDAKSLHSVIDSDGLP 785
            A+ILNK+S+DRG    Q+ +     +    N   DR +   R   D    +  ++ DGL 
Sbjct: 790  ALILNKASIDRGFGRCQVIRKYATTIKRYANGSYDRLEGPSRNEGDVAWKYEALEEDGLA 849

Query: 786  YVGQMIHPGEPY------CSIYDKTTN--------SWRTNSR--KGSESVFVDYVAVDMK 829
             VG+ I  G+ Y       +  D T          SW+ +    K  E  ++D + +   
Sbjct: 850  GVGEKIESGQIYINKQIPTNANDNTIATRIQQHELSWKASPMIYKSFEPGYIDKIMLTTT 909

Query: 830  NSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINP 889
            +S     K  +  R TR P +GDKFSSRHGQKGVC  +    DMPF    G+ PD+I+NP
Sbjct: 910  DSDQTLIKCLV--RQTRRPELGDKFSSRHGQKGVCGLIVQQEDMPFDQ-NGITPDIIMNP 966

Query: 890  HAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEML 949
            H FPSRMT+  ++E +A K G L G     T F  S                +D++ ++L
Sbjct: 967  HGFPSRMTVGKMIELLAGKAGVLSGTLQYGTAFGGSK---------------IDDMSQIL 1011

Query: 950  RTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPI 1009
               G++Y G + L SG+ G  L   IF GP+YYQ+L+HMV DK   R+ G    +TRQP 
Sbjct: 1012 IENGYSYSGKDELTSGITGESLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAILTRQPT 1071

Query: 1010 KGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQK 1069
            +GR R GG+R GEMERD L+A+GA+ LL +RL   SD    D+C  CG +          
Sbjct: 1072 EGRSRDGGLRLGEMERDCLIAYGASQLLLERLMLSSDAFKVDICEACGLI---------- 1121

Query: 1070 RAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
                            K  C+ C+++K +  + +PY  + L  EL +MNI   L L D
Sbjct: 1122 --------------GYKGWCNRCKSTKDVVKLTIPYAAKLLFQELISMNIIPKLILHD 1165


>gi|302307227|ref|NP_983821.2| ADL275Cp [Ashbya gossypii ATCC 10895]
 gi|299788898|gb|AAS51645.2| ADL275Cp [Ashbya gossypii ATCC 10895]
 gi|374107033|gb|AEY95941.1| FADL275Cp [Ashbya gossypii FDAG1]
          Length = 1141

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 343/1196 (28%), Positives = 535/1196 (44%), Gaps = 182/1196 (15%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
            F  ++ LV+ H++SF+Y +D  L ++                                  
Sbjct: 47   FLKVKGLVKQHLDSFNYFVDVDLKKIIKANEMVLSDVDPEFYLKYVDIRVGRRSNSSKID 106

Query: 37   -----HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQ 91
                  CR   ++Y+  +  D+E  Y    S V+ +    G+ P+ML++ +C L GA  +
Sbjct: 107  MTPPHECRLRDMTYSAPIFVDIE--YTRGRSIVLHKDVEIGKMPIMLRSNKCILNGASEE 164

Query: 92   KLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC 151
             +  L E   + GGYFI+NG E+V    IL ++        S  R   E    KA+V   
Sbjct: 165  VMAKLNECPLDPGGYFIVNGTEKV----ILVQEQL------SKNRIIVEADEKKAIVQAS 214

Query: 152  VRKDQSSVTLKLYYLL-NGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYD 210
            V         K Y +  N  + L      +E  +P+ IVLKA    +DLEI   L C  D
Sbjct: 215  VTSSTHERKSKTYVVTKNDKIYLKHNSIAEE--VPIVIVLKACGIVSDLEIM-QLVCGND 271

Query: 211  EKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV----IDGLQSES 266
              Y+            +   I   E   +++ T+ Q L++IG   + +    +  LQ E 
Sbjct: 272  SSYQ------------DIFAINFEEASKMNIYTQQQALEYIGTKVKTIRRQKLTVLQ-EG 318

Query: 267  YYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGH 326
              A+A TVI  ++ V   D  +K   +  M +++   + +  + D+ D + N+ + L G 
Sbjct: 319  IEAIATTVIA-HLTVEALDFREKALYVAMMTRRVIMAIHNPKMVDDRDYVGNKRLELAGQ 377

Query: 327  LITIYLKEKLEDWLRKGKKLIQDEIE--NNGKKFDFFNLANIKKVMEKNPSKQIGTSIET 384
            L+++  ++  + +    K  I   ++  N  + +D     N+        S  I + +  
Sbjct: 378  LMSLLFEDLFKKFNNDFKASIDKVLKKPNRAEMYDALLSINVH-------SNNITSGLNR 430

Query: 385  MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLP 443
             + TG  + +      +RAG T    RL+++  +     +   + F   R  S  R L P
Sbjct: 431  AISTGNWSLKRFK--MERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRKVSGPRALQP 486

Query: 444  ESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP 503
              +G LC   TP+GE CGL+ ++     + +  D    I++        L  L+GV  I 
Sbjct: 487  SQFGMLCTSDTPEGEACGLVKNLALMTHITTD-DEEEPIKN--------LCYLLGVEDIT 537

Query: 504  SLPKLVKSGPPAVLSVLLDGRVVGV--IPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYV 561
             L     +       V L+G ++G    P+  + +     R  KVS            ++
Sbjct: 538  LLDS---ASIHLNYGVYLNGTIIGTTRFPARFVNQFRLLRRTGKVSE-----------FI 583

Query: 562  PLSLGGAYPGLYLFTSPPKFVRP---VRN-ISLPSEESQNIELIGPFE-QVFMEIRCPDG 616
             +        +++ T   +  RP   VRN  S+ +       L G  +   F+++   + 
Sbjct: 584  SIYTNSHQKAVHIATDGGRICRPLIIVRNGKSMVTAGHLRRLLEGELQFDDFLKLGLVEY 643

Query: 617  GDGGRRN-AFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQ 665
             D    N ++ A          TH EI P  +L  VA L PY  HNQSPRN YQC M KQ
Sbjct: 644  LDVNEENDSYIALYEKDIEEGTTHLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQ 703

Query: 666  TMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDME 725
             +G        R D  LY +  PQ P+V++ T      D+ P G NA VAV++Y+GYD+E
Sbjct: 704  AIGAIAYNQFKRIDTLLYLMIYPQQPMVKSKTIELIDYDKLPAGQNATVAVMSYSGYDIE 763

Query: 726  DAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSL--HSVIDSDG 783
            DA+++NKSS+DRG    +  +  T  L    N         R +++ + +  H  +  DG
Sbjct: 764  DALVINKSSIDRGFGRCETRKKTTTILKRYPNHTQDIIGGMRVDENGEPIWQHQSLGPDG 823

Query: 784  LPYVGQMIHPGEPY------CSIYDKTTNSWRTNSR------KGSESVFVDYVAVDMKNS 831
            L  VG  +  G+ Y       +  D   N  ++  R      +  E   +D V   M  S
Sbjct: 824  LGEVGMKVTSGQIYINKSIPTNASDSVLNQVQSQYREAPIIYRAPEPSHIDQVM--MSVS 881

Query: 832  KNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHA 891
             N      +  R  R P +GDKFSSRHGQKGVC  +    DMPF+   G+ PD+I+NPH 
Sbjct: 882  DNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVQQEDMPFND-QGICPDIIMNPHG 940

Query: 892  FPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRT 951
            FPSRMT+  +LE V+ K G L+G     T F  S               L D + E+L  
Sbjct: 941  FPSRMTVGKMLELVSGKAGVLNGTLEYGTCFGGS--------------QLAD-MSEILVN 985

Query: 952  CGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKG 1011
             GFNY G ++LYSG+ G  L   +F GP+YYQ+L+HMV DK   R+ G    +TRQP +G
Sbjct: 986  NGFNYSGKDMLYSGITGECLQAYVFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEG 1045

Query: 1012 RKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRA 1071
            R R GG+R GEMERD ++A+GA+ LL +RL   SD    DVC+ CG +  + +       
Sbjct: 1046 RSRDGGLRLGEMERDCVIAYGASQLLLERLMLSSDAFEVDVCNKCGLMGYSGW------- 1098

Query: 1072 IREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
                             C +C++++ +  + +PY  + L  EL +MNI   L+L D
Sbjct: 1099 -----------------CTSCKSAEHIIKMTIPYAAKLLFQELLSMNIAPRLKLED 1137


>gi|393911066|gb|EJD76149.1| DNA-directed RNA polymerase [Loa loa]
          Length = 1136

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 347/1213 (28%), Positives = 538/1213 (44%), Gaps = 201/1213 (16%)

Query: 9    FEPLRELVRHHIESFDYML------------------------------------DEGLS 32
            F  +R LV+ HI S+DY +                                    +EG +
Sbjct: 22   FLQVRGLVKQHIASYDYFVSTEIKKILRANDRITSDANPSFYLKYLDIRVGMPSSEEGFN 81

Query: 33   EMFD-----HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQG 87
            ++ D      CR   ++Y+  +  D+E  Y      V+R     G+ PVML++ +C L+ 
Sbjct: 82   QINDKISPHECRLRDMTYSAPISVDIE--YTRGSQRVLRNGLVIGKMPVMLRSSKCVLKN 139

Query: 88   ADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAV 147
             +  +L  ++E   + GGYFI+ G E+V   V++ +Q     + ++     R    +   
Sbjct: 140  MNESELAHVQECPYDPGGYFIIRGSEKV---VLIQEQ-----LSKNRIMIGRNSKKELQC 191

Query: 148  VIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTC 207
             I    +++ S T    Y+ +   R           +PV IV KA+   +D +I + +  
Sbjct: 192  EILSSTQERKSKT----YIASKKQRYYVRHNQLSDDVPVAIVFKAMGFESDHDIVSAVG- 246

Query: 208  CYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEH-----FQPVIDGL 262
              +EK+     A  +P + E             + T+   LQ+I        F P   G 
Sbjct: 247  -LEEKFV----AAMAPSIEE--------CASHQIVTQEGALQYIASKVKMRKFGPFASGT 293

Query: 263  QS---ESYYAVAETVIRDYIFVHLN--DNNDKFN--LLIFMLQKLFSLVDHTSVSDNPDS 315
             S     + A+    + + +  H+   D N K     L  M+++L       +  D+ D 
Sbjct: 294  SSTLPREHEAI--DFLSNLMIAHVPCPDGNMKMKAIYLGLMIRRLMQAEVGDTECDDRDF 351

Query: 316  LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPS 375
              N+ + L G L+ +  ++  + +  + K++  + +   GK      LA    +++    
Sbjct: 352  YGNKRLELAGSLLALLFEDVFKRFNSELKRIADNSL---GK-----TLAAPLDIVKHMRQ 403

Query: 376  KQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
              I  ++   L TG    +      +R G T    RL+++  +     ++  ++F   R 
Sbjct: 404  DLITNALVDALATGNWTIKRFK--MERQGVTQVLSRLSYISVLGMMTRIN--STFEKTRK 459

Query: 436  TS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILR 494
             S  R L P  WG LCP  TP+GE CGL+ ++     + +  D    IR         L 
Sbjct: 460  VSGPRSLQPSQWGMLCPSDTPEGESCGLVKNLALISHITTDSDEEPVIR---------LL 510

Query: 495  VLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPD 554
               GV  + SL        P    V L+G +VG+  + + +++V+ +R ++         
Sbjct: 511  YNSGVEDVKSL-HFSAIHSPVYHIVFLNGVIVGL--TIDPQRIVSTIRAVRRHG------ 561

Query: 555  DLEVGYVPLSLGGAYPGLYLFTSPPKFVRP---VRNISLPSEESQNIELIGPFEQVFMEI 611
             L   +V +S   A   +Y+ +   +  RP   V+N  +P    ++IE +    ++F + 
Sbjct: 562  -LLNEFVSVSTNAAQRSVYIASDGGRLCRPYIIVKN-GVPQVTQEHIEELKKGCRIFEDF 619

Query: 612  ------------RCPDGGDGGRRNAFP--ATHEEIHPTGMLSVVANLTPYSDHNQSPRNM 657
                           D       N      TH EI P  +L V A L PY  HNQSPRN 
Sbjct: 620  VDDGLIEYLDVNEMNDASIAVYENQIKPNTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNT 679

Query: 658  YQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVL 717
            YQC M KQ MG      + R D  +Y L  PQ P+V+T T      ++ P G NA++AV+
Sbjct: 680  YQCAMGKQAMGTIGYNQQKRIDSLMYLLVYPQRPLVKTKTIEFCNFEKLPAGQNAVIAVM 739

Query: 718  AYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR--GQKLFRRNKDAKS 774
            +Y+GYD+EDA++LNK+S+DRG     +Y+          N+  DR  G  +    +    
Sbjct: 740  SYSGYDIEDALVLNKASLDRGYGRCLVYKHAKATARKYPNQTFDRLMGPTVEATTRKPIY 799

Query: 775  LHSVIDSDGLPYVGQMIHPGE-------PYCSIYDKTTNSWRTNSRKGSESVFVDYVAVD 827
             H V+D +G+ YVG  IH  +       P  S     T S   N      S  V+Y  V 
Sbjct: 800  KHQVLDQEGIVYVGACIHSKQVMINKHMPVVSTEAGATTS-SNNDGTNVSSHEVEYKDVS 858

Query: 828  MKNSKNLPQKA---------------NIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDID 872
            +     +P  A                +  R TR P +GDKFSSRHGQKGVC  +    D
Sbjct: 859  VVYRNPVPSYAERVLLTYNEDDAHLIKVLLRQTRRPELGDKFSSRHGQKGVCGLIAQQED 918

Query: 873  MPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGD 932
            MPF+ + GM PD+I+NPH +PSRMT+  L+E ++ K   L GKF   T F          
Sbjct: 919  MPFNDL-GMCPDMIMNPHGYPSRMTVGKLMELLSGKNAVLSGKFHYGTAF---------- 967

Query: 933  TGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDK 992
             G D+    VD + E L   GFNY G ++L SG+ G +L   I+ GP+YYQ+L+HMV DK
Sbjct: 968  -GGDQ----VDVVCEELAARGFNYLGKDMLTSGITGQQLCAYIYFGPIYYQKLKHMVLDK 1022

Query: 993  FQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADV 1052
               R+ G    +TRQP +GR R GG+R GEMERD L+A+GA+ LL +RL   SD    DV
Sbjct: 1023 MHARARGPRAVLTRQPTEGRARDGGLRLGEMERDCLIAYGASMLLMERLMVSSDEFKVDV 1082

Query: 1053 CSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAA 1112
            CS CG +                          K  C  C++S+ M T+ +PY  + L  
Sbjct: 1083 CSQCGLI------------------------GYKGWCQMCRSSRTMATIKIPYACKLLFQ 1118

Query: 1113 ELAAMNI--KITL 1123
            EL +MNI  KI+L
Sbjct: 1119 ELQSMNIVPKISL 1131


>gi|190347676|gb|EDK39998.2| DNA-directed RNA polymerase III 130 kDa polypeptide [Meyerozyma
            guilliermondii ATCC 6260]
          Length = 1156

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 328/1145 (28%), Positives = 523/1145 (45%), Gaps = 160/1145 (13%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR   ++Y+  +  DVE  Y      ++ +    G+ P+MLK+ +C L G +  ++  L 
Sbjct: 115  CRLRDLTYSAPIYVDVE--YTRGRKIIMHKDLEIGRMPIMLKSNKCILDGINDHQMAKLD 172

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC-VRKDQ 156
            E   + GGYFI+NG E+V   +++ +Q     ++  +  D ++G    +V      RK +
Sbjct: 173  ECPIDPGGYFIVNGTEKV---ILIQEQLSKNRIIVEA--DEKKGIVQASVTSSTHERKSK 227

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
            + V  K     N  + L     G++  +P+ I+LKA   T+DLEI   L C  + +Y+  
Sbjct: 228  TYVITK-----NEKIYLKHNSIGED--VPIVIILKAAGITSDLEIL-QLVCGSNPQYQ-- 277

Query: 217  KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ-------PVIDGLQSESYYA 269
                      +   +   E   L + T+ Q L ++G+  +       P +  LQ E   A
Sbjct: 278  ----------DLFAVNFEEAARLEVFTQQQALNYVGKRVKTVRRAGAPKLSQLQ-EGIEA 326

Query: 270  VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
            +A T+I  +I V      +K   +  M +++   + +  + D+ D + N+ + L G L++
Sbjct: 327  IATTIIA-HITVDDLQFREKALYIAMMARRVLMTMHNPKMVDDRDYVGNKRLELAGQLMS 385

Query: 330  IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
            +  ++  + +    K  I   ++   +  +F  L +I        S  I   +   + TG
Sbjct: 386  LLFEDLFKKFNSDFKANIDKILKKPSRASEFDALLSINI-----HSNNITMGMNRAISTG 440

Query: 390  RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPESWGF 448
              + +      +RAG T    RL+++  +     +   + F   R  S  R L P  +G 
Sbjct: 441  NWSLKRF--KMERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRKVSGPRALQPSQFGM 496

Query: 449  LCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRD--FSKMRTSILRVLIGVGMIPSLP 506
            LC   TP+GE CGL+ ++     + +  D    IR   F+     IL V           
Sbjct: 497  LCTSDTPEGEACGLVKNLALMTHITT-DDEEEPIRSVCFALGCEDILEV--------DSA 547

Query: 507  KLVKSGPPAVLSVLLDGRVVGV--IPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS 564
             L   G      + L+G ++G    P+  +    A  R  KVS    I  +     V ++
Sbjct: 548  TLHADGN---FGIYLNGTIIGTTRFPAQFVGNFRALRRSGKVSPFISIHTNTHQNAVQIA 604

Query: 565  LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGG---- 620
              G            +  RP+  I + S+   N++ +   + +  E    D    G    
Sbjct: 605  TDGG-----------RVCRPL--IIVDSKNKANVKAVHLKKLMAGEWVFEDFIKHGLVEY 651

Query: 621  -----RRNAFPATHE------------EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMA 663
                   ++F A +E            EI P  +L  VA L PY  HNQSPRN YQC M 
Sbjct: 652  LDVNEENDSFIALYERDLEANQNITHLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMG 711

Query: 664  KQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYD 723
            KQ +G        R D  LY +  PQ P+V+T T      D+ P G NA VAV++Y+GYD
Sbjct: 712  KQAIGAIAYNQFRRIDTLLYLMVYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYD 771

Query: 724  MEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSL--HSVIDS 781
            +EDA++LNK+S+DRG    Q+ +  T++L    N         R ++  + +  H+ +  
Sbjct: 772  IEDALVLNKASIDRGFGRCQVLRKNTVNLKRYPNHTKDVVSGMRVDEQGEPIFPHASLGP 831

Query: 782  DGLPYVGQMIHPGEPY---CSIYDKTTNSWRTNS----------------RKGSESVFVD 822
            DGL  VG  +  G+ Y   C   + + +    N                  +G E  ++D
Sbjct: 832  DGLGEVGMKVENGQVYVNKCVPTNASESVLGANEPHHQQNVESHRETPAYYRGPEPSYID 891

Query: 823  YVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMR 882
             V   M  S N      +  R TR P +GDKFSSRHGQKGVC  +    D+PF+   G+ 
Sbjct: 892  QVM--MSVSDNDQTLIKVLLRQTRRPELGDKFSSRHGQKGVCGIIVQQEDLPFND-DGIV 948

Query: 883  PDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLV 942
            PD+I+NPH FPSRMT+  ++E ++ K G L+G     T F  S                +
Sbjct: 949  PDIIMNPHGFPSRMTVGKMIELISGKAGVLNGSLEYGTCFGGSK---------------L 993

Query: 943  DELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMD 1002
            +++ E+L   GFNY G ++LYSG+ G  L   IF GP+YYQ+L+HMV DK   R+ G   
Sbjct: 994  EDMSEILVKNGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRA 1053

Query: 1003 QITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTA 1062
             +TRQP +GR R GG+R GEMERD ++A+GA+ LL +RL   SD    DVC+ CG +   
Sbjct: 1054 VLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMLSSDAFEVDVCNNCGLMGYN 1113

Query: 1063 TFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKIT 1122
            ++                        C +C++S+ +  + +PY  + L  EL +MNI   
Sbjct: 1114 SW------------------------CTSCKSSENVIKMTIPYAAKLLFQELLSMNIAPR 1149

Query: 1123 LQLGD 1127
            L+L D
Sbjct: 1150 LKLDD 1154


>gi|393219485|gb|EJD04972.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Fomitiporia mediterranea MF3/22]
          Length = 1148

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 328/1139 (28%), Positives = 507/1139 (44%), Gaps = 149/1139 (13%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
             CR    +Y+  ++  V  QY      V+R+  N G+ P+ML++ +C L G    +L  +
Sbjct: 113  ECRLRDTTYSAPIL--VTIQYTRGKQVVLRKNVNIGRLPIMLRSNKCVLTGRTEAQLARM 170

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVV-IRCVRKD 155
             E   + GGYF++ G E+V    IL ++        S  R   E    K VV   C    
Sbjct: 171  TECPLDPGGYFVVKGTEKV----ILVQEQL------SKNRIIVEHDPVKGVVQASCTSST 220

Query: 156  QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
               +  K Y +     RL          +P+ I LKAL   +D EI   LT    E YK 
Sbjct: 221  HGGLKSKTY-VATKKERLYLRHNCFHEDIPIVIALKALSIQSDKEIL-LLTAGNTEAYK- 277

Query: 216  EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQP--VIDGLQSESYYAVAET 273
               +  SP + E  KI         + T+ Q L++IG   +    + G +  ++    E 
Sbjct: 278  ---STFSPNLEEAAKI--------GVFTKHQALEYIGSRVKVNRRVIGPRRPAWEEAMEA 326

Query: 274  VIRDYIFVHLNDNNDKFN----LLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
             +   +  H+  NN  F      +  M +++   +    + D+ D + N+ + L G L+ 
Sbjct: 327  -LATIVLAHVPVNNLDFRPKAIFIATMTRRVLMCLADEKMVDDRDYVGNKRLELAGQLLA 385

Query: 330  IYLKEKLEDWLRKGKKLIQDEIENNGK--KFDFFNLANIKKVMEKNPSKQIGTSIETMLK 387
            +  ++  + +    K  I   ++   +  +FD FN    +          I       + 
Sbjct: 386  LLFEDLFKTFNTNLKSAIDKVLKKPSRTSEFDAFNTMQFQ-------GDHITAGFVRAIS 438

Query: 388  TGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPESW 446
            TG  + +      +RAG T    RL+++  +     +   + F   R  S  R L P  W
Sbjct: 439  TGNWSLKRFK--MERAGVTHVLSRLSYISALGMMTRI--SSQFEKTRKVSGPRALQPSQW 494

Query: 447  GFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLP 506
            G LCP  TP+GE CGL+ ++     + +  +    IR    +    + +  G  +     
Sbjct: 495  GMLCPSDTPEGEACGLVKNLALMTHITTDVEEEPLIRLVHALGVEDICLATGAEIYGQ-- 552

Query: 507  KLVKSGPPAVLSVLLDGRVVGVI--PSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS 564
                        V ++G ++G+   PS    + V + RRL+ +            +V + 
Sbjct: 553  --------NSFVVHVNGAIIGITRYPS----RFVQNFRRLRRAGRFS-------EFVSIY 593

Query: 565  LGGAYPGLYLFTSPPKFVRPVRNI--SLPSEESQNI----ELIGPFEQVFMEIRCPDGGD 618
            +   +  +Y+ +   +  RP+  +  S P   SQ+I    + +  F+  F+     +  D
Sbjct: 594  INHHHKAVYIASDGGRICRPMIIVENSRPKVTSQHIIDLKKQLLTFDD-FLRRGLVEYLD 652

Query: 619  GGRRN-AFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTM 667
                N ++ A          TH EI P  +L  VA L PY  HNQSPRN YQC M KQ +
Sbjct: 653  VNEENDSYIALYEDMIVPTTTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAI 712

Query: 668  GFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDA 727
            G        R D  LY +  PQ P+V+T +    G D+ P G NA VAV++Y+GYD+EDA
Sbjct: 713  GAIAYNQLNRIDTLLYLMVYPQQPMVKTKSIELVGYDKLPAGQNATVAVMSYSGYDIEDA 772

Query: 728  MILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR-GQKLFRRNKDAKSLHSVIDSDGLP 785
            +ILNK+S+DRG    Q+ +     +    N   DR        N   +  + +I SDGL 
Sbjct: 773  LILNKASLDRGYGRCQVMRKNATLIRKYPNGTYDRLADAPLDENGRVQKKYDIIQSDGLA 832

Query: 786  YVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKAN------ 839
             VG+ + PG+ Y    +K T S   ++    ++  V Y    M     +P   +      
Sbjct: 833  GVGERVDPGDVYV---NKQTPSNANDNTFTGQAAGVAYKNTPMTYKSPVPGNIDKVMLTD 889

Query: 840  ---------IRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPH 890
                     +  R TR P +GDKFSSRHGQKGVC  +    DMPF+   G+ PD I+NPH
Sbjct: 890  TENDQTLVKVLIRQTRRPELGDKFSSRHGQKGVCGLIVNQEDMPFND-DGISPDSIMNPH 948

Query: 891  AFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLR 950
             FPSRMT+  ++E +A K G L GK    T F  S                V+++ ++L 
Sbjct: 949  GFPSRMTVGKMIELLAGKAGVLDGKLQYGTAFGGSK---------------VEDMSKILI 993

Query: 951  TCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIK 1010
              GFNY G ++L SG+ G ++   ++ GP+YYQ+L+HMV DK   R+ G    +TRQP +
Sbjct: 994  ERGFNYAGKDMLTSGITGEQMEAYVYFGPIYYQKLKHMVMDKMHARARGPRATLTRQPTE 1053

Query: 1011 GRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKR 1070
            GR R GG+R GEMERD L+ +GA  LL +RL   SD      C +CG +    +      
Sbjct: 1054 GRSREGGLRLGEMERDCLIGYGATQLLLERLMLSSDKFEVHACEMCGLMGYNGW------ 1107

Query: 1071 AIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGDGA 1129
                              C  C++SKGM  + +PY  + L  EL AMN+   L L D +
Sbjct: 1108 ------------------CPYCKSSKGMAKLVIPYAAKLLFQELMAMNVVPRLILDDAS 1148


>gi|307595330|ref|YP_003901647.1| DNA-directed RNA polymerase subunit B [Vulcanisaeta distributa DSM
            14429]
 gi|307550531|gb|ADN50596.1| DNA-directed RNA polymerase subunit B [Vulcanisaeta distributa DSM
            14429]
          Length = 1141

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 356/1206 (29%), Positives = 554/1206 (45%), Gaps = 214/1206 (17%)

Query: 15   LVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRE------- 67
            LVRH I+SF+  +++ L E+ +     +    G     ++ + ++ G P VRE       
Sbjct: 50   LVRHQIDSFNDFVEKKLQEIVNENNIIETEVKGLY---IKLERIEVGKPRVREADASEHI 106

Query: 68   ---------------------------------RFNFGQFPVMLKTRRCHLQGADSQKLV 94
                                             +   G  P+M++++ C+L G   Q+L+
Sbjct: 107  LYPMEARLRNLTYAAPLYLTMVLYVNDEEVDRQKVYIGDLPIMVRSKFCNLYGLKRQELI 166

Query: 95   SLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDR--REGYTDKAVVIRCV 152
            S  E+  + GGYFI+NG ERV  S      N P       F D+  +   T  A VI   
Sbjct: 167  SKLEDPDDPGGYFIINGSERVIVSQEDLAPNKP-------FYDKGDKASITHVAKVISIG 219

Query: 153  RKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEK 212
               +++VT++ +   +G + + F        +P  I+++AL    D +I   L    D  
Sbjct: 220  AGYKTTVTVERHR--DGIIYVTFPAIATR--IPFPIIMRALGLETDEDIV--LAVSDDPD 273

Query: 213  YKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAE 272
             + E       L S +  + +A   D         L  IG     V  G   E     A+
Sbjct: 274  IQNEL------LPSLQFSVQIASTVD-------DALDFIGSK---VAIGQPREVRIERAK 317

Query: 273  TVIRDYIFVHLNDNND---KFNLLIF-MLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
             V+  Y   HL    D   K  L++  M++ +  +       D+ D + N+ + L G L+
Sbjct: 318  QVLDRYFLPHLGTTEDARIKKALMVGQMVKGVIEMYLGRRQPDDKDHIANKRVRLVGDLM 377

Query: 329  TIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKT 388
                +          ++++QD                I++ +E++ S+    S+ T+++ 
Sbjct: 378  AQLFRAVF-------RQVLQD----------------IRQQLERHYSRGKIPSLVTLVRA 414

Query: 389  G------RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT---SVR 439
                   R A  TG  +  R G +   +R N +  +S  R V    S    RT      R
Sbjct: 415  DIITERVRHAIATGNWIGGRTGVSQMLDRTNIMSTLSHLRRVVSNLS----RTQPHFEAR 470

Query: 440  KLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGV 499
             L P  WG LC + TP+G+ CGL+ ++     +    D              + ++L  +
Sbjct: 471  DLHPTQWGRLCAIETPEGQNCGLVKNLALLSTITVGVDE-----------NEVEKLLYDL 519

Query: 500  GMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK--------VSAASV 551
            G++P L +  K G      V L+GR++GV   +E +K+V+ +R ++        ++ A +
Sbjct: 520  GVVPIL-RARKEGVKGT-EVYLNGRLIGV--HTEPDKLVSTIREMRRRGQINHEINVARI 575

Query: 552  IPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELI--GPFEQVFM 609
              + L+   V    G     L +  +    +RP     L   E    +LI  G  E +  
Sbjct: 576  RNEYLDEVRVNCDGGRLRRPLIIIENGKPKLRPEHVEKLRKGEWTWSDLISNGIIEYL-- 633

Query: 610  EIRCPDGGDGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQ 659
                 DG +    NA  A          TH E+ P+ M+  VA++ PY++HNQSPRN+Y+
Sbjct: 634  -----DGDE--EENALVAINPEEDMSKYTHMEVIPSVMIGAVASIIPYAEHNQSPRNIYE 686

Query: 660  CQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAY 719
              MAKQ++GF     +FR D + + L  P+ P+V T      G  E P G NA+VA+L Y
Sbjct: 687  AAMAKQSLGFPAANYRFRMDSRGHLLIYPERPLVITRGIELNGYLERPAGQNAVVALLTY 746

Query: 720  TGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVDRGQ--KLFRRNKDAKSLH 776
            TGY+MEDA+ILNKS+++RGM     ++T ET  +   G + DR +      R       +
Sbjct: 747  TGYNMEDAVILNKSAIERGMYRSVFFRTYETEQMRYPGGEEDRIEIPSAEVRGYKGPEAY 806

Query: 777  SVIDSDGLPYVGQMIHPGE---------PYCSIYDKTT-NSWRTNS----RKGSESVFVD 822
            + +D DG+      +  GE          +  +Y +T  +S R +S    R+G + + VD
Sbjct: 807  AHLDEDGIVSPEVFVSGGEVLIGKTSPPRFYGVYTETVVSSARRDSSITVRRGEKGI-VD 865

Query: 823  YVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMR 882
             V V   N     +   ++ R  R P +GDKF+SRHGQKGV   + P  DMPF+   G+ 
Sbjct: 866  SVVVTETNEGY--KLVKVKVRELRIPELGDKFASRHGQKGVMGMMIPMQDMPFTE-DGIT 922

Query: 883  PDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLV 942
            PD+I+NPHA PSRMT+  LLES+A K  +L G  +DATPF           G  E     
Sbjct: 923  PDIIVNPHALPSRMTVGQLLESMAGKVAALRGVMIDATPF----------EGVTE----- 967

Query: 943  DELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMD 1002
            +EL ++L   GF + G EV+YSG+ G +L  +IFIG VYYQ+L HMV+DK   R+ G + 
Sbjct: 968  EELRDLLIRSGFRWDGKEVMYSGLTGRKLEADIFIGVVYYQKLHHMVADKIHARARGPVQ 1027

Query: 1003 QITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTA 1062
             +TRQP +GR R GG+R GEMERD L+AHGAA LL +RL   SD +V  VC  CG  + A
Sbjct: 1028 ILTRQPTEGRSREGGLRLGEMERDVLIAHGAAALLRERLVESSDRYVMYVCEDCG--MIA 1085

Query: 1063 TFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKG-METVAMPYVFRYLAAELAAMNIKI 1121
             +   + + +  I G                  KG +  V +PY F+ L  EL ++ I  
Sbjct: 1086 WYDSNKGKPVCPIHG-----------------DKGRIVRVVVPYAFKLLLQELMSLGIYP 1128

Query: 1122 TLQLGD 1127
             ++ GD
Sbjct: 1129 RIEAGD 1134


>gi|195485554|ref|XP_002091138.1| GE12399 [Drosophila yakuba]
 gi|194177239|gb|EDW90850.1| GE12399 [Drosophila yakuba]
          Length = 1137

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 333/1140 (29%), Positives = 511/1140 (44%), Gaps = 179/1140 (15%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR    +Y+  +  D+E  Y      + R     G+ P+ML+   C L G    +L  L 
Sbjct: 110  CRLRDTTYSAPITVDIE--YTRGTQRIKRNNLLIGRMPLMLRCSNCALTGKSEFELSKLN 167

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC----VR 153
            E   + GGYF++ G E+V   +++ +Q     M+   F            V++C      
Sbjct: 168  ECPLDPGGYFVVRGQEKV---ILIQEQLSWNKMLTEDFNG----------VVQCQVTSST 214

Query: 154  KDQSSVTLKL-----YYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
             ++ S TL L     YYL + S+            +P+ ++ KAL   +D EI + +   
Sbjct: 215  HEKKSRTLVLSKHGKYYLKHNSMTDD---------IPIVVIFKALGVVSDQEIQSLIGI- 264

Query: 209  YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIG-----EHFQPVIDGLQ 263
             D K +   GA             L +  +L + T+ + L+++G     + FQ       
Sbjct: 265  -DSKSQNRFGAS------------LLDAYNLKVFTQQRALEYMGSKLVVKRFQSATTKTP 311

Query: 264  SESYYAVAETVIRDYIFVHLNDNNDKFNLLI------FMLQKLFSLVDHTSVSDNPDSLQ 317
            SE    +  T I  ++ V      D FNL +       M++++ +     ++ D+ D   
Sbjct: 312  SEEARELLLTTILAHVPV------DNFNLQMKAIYVSLMVRRVMAAELDKTLFDDRDYYG 365

Query: 318  NQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQ 377
            N+ + L G L+++      ED  ++    ++   + N  K        +K +     + Q
Sbjct: 366  NKRLELAGSLLSMMF----EDLFKRMNWELKTIADKNIPKVKAAQFDVVKHMR----AAQ 417

Query: 378  IGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS 437
            I   +E+ + +G    +      +RAG T    RL+++  +     V+  + F   R  S
Sbjct: 418  ITAGLESAISSGNWTIKRFK--MERAGVTQVLSRLSYISALGMMTRVN--SQFEKTRKVS 473

Query: 438  -VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R L P  WG LCP  TP+GE CGL+ ++     + +  + R            I+   
Sbjct: 474  GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVEERP---------VMIVAFN 524

Query: 497  IGVGMIPSLPKLVKSGP---PAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIP 553
             GV  I    + V   P   P V  V ++G V+G+  + +   +V +LR ++        
Sbjct: 525  AGVEDI----REVSGNPINNPNVFLVFINGNVLGLTLNHK--HLVRNLRYMRRKG----- 573

Query: 554  DDLEVG-YVPLSLGGAYPGLYLFTSPPKFVRP---VRNISLPSEESQNIEL---IGPFEQ 606
                +G YV +        +Y+ T   +  RP   V N     ++    EL   I  F+ 
Sbjct: 574  ---RMGSYVSVHTSYTQRCIYIHTDGGRLCRPYVIVENRRPLVKQHHLNELNRGIRKFDD 630

Query: 607  VFMEIRCPDGGDGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRN 656
              ++            ++F A          TH EI P  +L V A L PY  HNQSPRN
Sbjct: 631  FLLDGLIEYLDVNEENDSFIAWNEDQIEDRTTHLEIEPFTLLGVCAGLVPYPHHNQSPRN 690

Query: 657  MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
             YQC M KQ MG      K R D  +Y+L  P  P+V++ T      D+ P G NA VAV
Sbjct: 691  TYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPHAPMVKSKTIELTNFDKLPAGQNATVAV 750

Query: 717  LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DRGQKLFRRNKDAKSL 775
            ++Y+GYD+EDA+ILNK+S+DRG     +Y+     +    N+  DR     +     K +
Sbjct: 751  MSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDRIMGPMKDALTNKVI 810

Query: 776  --HSVIDSDGLPYVGQ-------MIHPGEPYCSIYD-------KTTNSWRTNSRKGSESV 819
              H V+D+DG+   G+       MI+   P  +  +       +   +    S KG E  
Sbjct: 811  FKHDVLDTDGIVAPGEQVQNKQIMINKEMPAVTSMNPLQGQSAQVPYTAVPISYKGPEPS 870

Query: 820  FVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVT 879
            +V+ V V   + ++   K  I  R TR P IGDKFSSRHGQKGV   +    DMPF+   
Sbjct: 871  YVERVMVSANSEEDFLIK--ILLRQTRIPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDF- 927

Query: 880  GMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESK 939
            G+ PD+I+NPH FPSRMT+   LE +  K G L GKF   T F  S              
Sbjct: 928  GICPDMIMNPHGFPSRMTVGKTLELLGGKAGLLEGKFHYGTAFGGSK------------- 974

Query: 940  SLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTG 999
              V+++   L   GFNY G +  YSG+ GT L   I+ GPVYYQ+L+HMV DK   R+ G
Sbjct: 975  --VEDIQAELERHGFNYVGKDFFYSGITGTPLEAYIYSGPVYYQKLKHMVQDKMHARARG 1032

Query: 1000 TMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSV 1059
                +TRQP +GR R GG+R GEMERD L+++GA+ L+ +RL   SD    DVC  CG +
Sbjct: 1033 PKAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMISSDAFEVDVCRTCGRL 1092

Query: 1060 LTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
               ++                        CH CQ+S  +  ++MPY  + L  EL +MN+
Sbjct: 1093 AYCSW------------------------CHFCQSSANVSKISMPYACKLLFQELTSMNV 1128


>gi|392563480|gb|EIW56659.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Trametes versicolor FP-101664 SS1]
          Length = 1143

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 342/1219 (28%), Positives = 520/1219 (42%), Gaps = 215/1219 (17%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
            F  ++ LV+ HI+SF+Y +D  +  +                                  
Sbjct: 41   FLKVKGLVKQHIDSFNYFVDVDIKNILKANNKVTSDVDPRFWLKYTDIVVGFPDRTDADA 100

Query: 37   --------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGA 88
                     CR    +Y   ++  V  QY    S V R   N G+ P+ML++ +C L G 
Sbjct: 101  IDKSVTPHECRLRDTTYGAPIL--VTIQYTRGKSVVRRANVNIGRLPIMLRSNKCVLTGR 158

Query: 89   DSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVV 148
               +L  + E   + GGYFI+ G E+V    IL ++    + +           T   V 
Sbjct: 159  TEAQLARMTECPLDPGGYFIVKGTEKV----ILVQEQLSKNRIIVEVDP-----TKGVVQ 209

Query: 149  IRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--------LPVGIVLKALVDTNDLE 200
              C       +  K Y             +GK YL        +P+ I LKAL   +D E
Sbjct: 210  ASCTSSTHGGLKSKTYVATK---------KGKIYLRHNSIHEDVPIVIALKALGIQSDKE 260

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQP--V 258
            I   LT    E YK       +P + +  K        L + TR Q L+ IG   +    
Sbjct: 261  IL-LLTAGNHEAYKSSF----APNLEDAAK--------LGVFTRHQALEWIGSRVKVNRR 307

Query: 259  IDGLQSESYYAVAE---TVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
            + G +  ++    E   T++  ++ V   D   K   +  M +++   +D   + D+ D 
Sbjct: 308  VMGPRRPAWEEALEALATIVLAHVPVSGLDFRSKAVFVATMTRRVLMAMDDEKMVDDRDY 367

Query: 316  LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGK--KFDFFNLANIKKVMEKN 373
            + N+ + L G L+ +  ++  + +    K  I   ++   +  +FD FN    +      
Sbjct: 368  VGNKRLELAGQLLALLFEDLFKTFNANLKAAIDKVLKKPSRTSEFDAFNTMQFQ------ 421

Query: 374  PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
                I +     + TG  + +      +RAG T    RL+F+  +     +   + F   
Sbjct: 422  -GDHITSGFVRAISTGNWSLKRFK--MERAGVTHVLSRLSFVSALGMMTRI--SSQFEKT 476

Query: 434  RTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSI 492
            R  S  R L P  WG LCP  TP+GE CGL+ ++     + +  D    IR         
Sbjct: 477  RKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVDEEPIIR--------- 527

Query: 493  LRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVI 552
            +  ++GV  I SL    +   P    V ++G ++G+  +    + V++ RRL+ +     
Sbjct: 528  IAFMLGVEDI-SLATGTEIYGPHTFVVNVNGTIIGL--TRYPARFVSNFRRLRRAGRFS- 583

Query: 553  PDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP--VRNISLPSEESQNIELIGPFEQVFME 610
                   +V + +   +  + + +   +  RP  +     P   S++I  +   +  F +
Sbjct: 584  ------EFVSVYINHHHRTVLIASDGGRICRPMIIVESGRPKVMSEHIAQLKQGQLTFDD 637

Query: 611  ------IRCPDGGDGG-------RRNAFPAT-HEEIHPTGMLSVVANLTPYSDHNQSPRN 656
                  +   D  +          ++  P T H EI P  +L  VA L PY  HNQSPRN
Sbjct: 638  FLRKGLVEYLDVNEENDSYIALYEKDIVPGTTHLEIEPFTLLGAVAGLIPYPHHNQSPRN 697

Query: 657  MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
             YQC M KQ +G        R D  LY    PQ P+V+T T    G D  P G NA VAV
Sbjct: 698  TYQCAMGKQAIGAIGYNQLNRIDTLLYLSVYPQQPMVKTKTIELIGYDRLPAGQNATVAV 757

Query: 717  LAYTGYDMEDAMILNKSSVDRGMCHGQI----------YQTETIDLSDDGNKVDRGQKLF 766
            ++Y+GYD+EDA+ILNK+S+DRG    Q+          Y   T D   D    + GQ   
Sbjct: 758  MSYSGYDIEDALILNKASLDRGYGRCQVLRKNATLIRKYPNGTYDRLADAPVDETGQ--- 814

Query: 767  RRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVF------ 820
                  +  + +I  DGL  VG+ + PG+ Y  I  +T  +   NS  G  +        
Sbjct: 815  -----VQKKYDIIQPDGLAGVGERVDPGDVY--INKQTPTNANDNSFTGQAATVPYKNAP 867

Query: 821  ----------VDYVAV-DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWP 869
                      +D V + D +N + L     +  R TR P +GDKFSSRHGQKGVC  +  
Sbjct: 868  MTYKSPVAGQIDKVMITDTENDQTL---IKVLIRQTRRPELGDKFSSRHGQKGVCGLIVN 924

Query: 870  DIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKT 929
              DMPF+   G+ PD I+NPH FPSRMT+  ++E +A K G L GK    T F  S    
Sbjct: 925  QEDMPFND-QGIVPDTIMNPHGFPSRMTVGKMIELLAGKAGVLAGKLQYGTAFGGSK--- 980

Query: 930  NGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMV 989
                        V+++  +L   GF+Y G ++L SG+ G  L   ++ GP+YYQ+L+HMV
Sbjct: 981  ------------VEDMSRILIEKGFSYAGKDMLTSGITGEPLEAYVYFGPIYYQKLKHMV 1028

Query: 990  SDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHV 1049
             DK   R+ G    +TRQP +GR R GG+R GEMERD L+ +GA  LL +RL   SD   
Sbjct: 1029 MDKMHARARGPRATLTRQPTEGRSREGGLRLGEMERDCLIGYGATQLLLERLMISSDQFQ 1088

Query: 1050 ADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRY 1109
             D C  CG +    +                        C  C++SK M  + +PY  + 
Sbjct: 1089 VDACQECGLLGYNGW------------------------CPYCKSSKKMAQLTIPYAAKL 1124

Query: 1110 LAAELAAMNIKITLQLGDG 1128
            L  EL AMN+   L L D 
Sbjct: 1125 LFQELMAMNVVPRLVLDDA 1143


>gi|21464338|gb|AAM51972.1| LD14594p [Drosophila melanogaster]
          Length = 1146

 Score =  401 bits (1030), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 332/1140 (29%), Positives = 510/1140 (44%), Gaps = 179/1140 (15%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR    +Y+  +  D+E  Y      + R     G+ P+ML+   C L G    +L  L 
Sbjct: 119  CRLRDTTYSAPITVDIE--YTRGTQRIKRNNLLIGRMPLMLRCSNCALTGKSEFELSKLN 176

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC----VR 153
            E   + GGYF++ G E+V   +++ +Q     M+   F            V++C      
Sbjct: 177  ECPLDPGGYFVVRGQEKV---ILIQEQLSWNKMLTEDFNG----------VVQCQVTSST 223

Query: 154  KDQSSVTLKL-----YYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
             ++ S TL L     YYL + S+            +P+ ++ KAL   +D EI + +   
Sbjct: 224  HEKKSRTLVLSKHGKYYLKHNSMTDD---------IPIVVIFKALGVVSDQEIQSLIGI- 273

Query: 209  YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIG-----EHFQPVIDGLQ 263
             D K +   GA             L +  +L + T+ + L+++G     + FQ       
Sbjct: 274  -DSKSQNRFGAS------------LIDAYNLKVFTQQRALEYMGSKLVVKRFQSATTKTP 320

Query: 264  SESYYAVAETVIRDYIFVHLNDNNDKFNLLI------FMLQKLFSLVDHTSVSDNPDSLQ 317
            SE    +  T I  ++ V      D FNL +       M++++ +     ++ D+ D   
Sbjct: 321  SEEARELLLTTILAHVPV------DNFNLQMKAIYVSMMVRRVMAAELDKTLFDDRDYYG 374

Query: 318  NQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQ 377
            N+ + L G L+++      ED  ++    ++   + N  K        +K +     + Q
Sbjct: 375  NKRLELAGSLLSMMF----EDLFKRMNWELKTIADKNIPKVKAAQFDVVKHMR----AAQ 426

Query: 378  IGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS 437
            I   +E+ + +G    +      +RAG T    RL+++  +     V+  + F   R  S
Sbjct: 427  ITAGLESAISSGNWTIKRFK--MERAGVTQVLSRLSYISALGMMTRVN--SQFEKTRKVS 482

Query: 438  -VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R L P  WG LCP  TP+GE CGL+ ++     + +  + R            I+   
Sbjct: 483  GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVEERP---------VMIVAFN 533

Query: 497  IGVGMIPSLPKLVKSGP---PAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIP 553
             GV  I    + V   P   P V  V ++G V+G+  + +   +V +LR ++        
Sbjct: 534  AGVEDI----REVSGNPINNPNVFLVFINGNVLGLTLNHK--HLVRNLRYMRRKG----- 582

Query: 554  DDLEVG-YVPLSLGGAYPGLYLFTSPPKFVRP---VRNISLPSEESQNIEL---IGPFEQ 606
                +G YV +        +Y+ T   +  RP   V N     ++    EL   I  F+ 
Sbjct: 583  ---RMGSYVSVHTSYTQRCIYIHTDGGRLCRPYVIVENRRPLVKQHHLDELNRGIRKFDD 639

Query: 607  VFMEIRCPDGGDGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRN 656
              ++            ++F A          TH EI P  +L V A L PY  HNQSPRN
Sbjct: 640  FLLDGLIEYLDVNEENDSFIAWNEDQIEDRTTHLEIEPFTLLGVCAGLVPYPHHNQSPRN 699

Query: 657  MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
             YQC M KQ MG      K R D  +Y+L  P  P+V++ T      D+ P G NA VAV
Sbjct: 700  TYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPHAPMVKSKTIELTNFDKLPAGQNATVAV 759

Query: 717  LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DRGQKLFRRNKDAKSL 775
            ++Y+GYD+EDA+ILNK+S+DRG     +Y+     +    N+  DR     +     K +
Sbjct: 760  MSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDRIMGPMKDALTNKVI 819

Query: 776  --HSVIDSDGLPYVGQ-------MIHPGEPYCSIYD-------KTTNSWRTNSRKGSESV 819
              H V+D+DG+   G+       MI+   P  +  +       +   +    S KG E  
Sbjct: 820  FKHDVLDTDGIVAPGEQVQNKQIMINKEMPAVTSMNPLQGQSAQVPYTAVPISYKGPEPS 879

Query: 820  FVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVT 879
            +++ V V     ++   K  I  R TR P IGDKFSSRHGQKGV   +    DMPF+   
Sbjct: 880  YIERVMVSANAEEDFLIK--ILLRQTRIPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDF- 936

Query: 880  GMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESK 939
            G+ PD+I+NPH FPSRMT+   LE +  K G L GKF   T F  S              
Sbjct: 937  GICPDMIMNPHGFPSRMTVGKTLELLGGKAGLLEGKFHYGTAFGGSK------------- 983

Query: 940  SLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTG 999
              V+++   L   GFNY G +  YSG+ GT L   I+ GPVYYQ+L+HMV DK   R+ G
Sbjct: 984  --VEDIQAELERHGFNYVGKDFFYSGITGTPLEAYIYSGPVYYQKLKHMVQDKMHARARG 1041

Query: 1000 TMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSV 1059
                +TRQP +GR R GG+R GEMERD L+++GA+ L+ +RL   SD    DVC  CG +
Sbjct: 1042 PKAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMISSDAFEVDVCRTCGRM 1101

Query: 1060 LTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
               ++                        CH CQ+S  +  ++MPY  + L  EL +MN+
Sbjct: 1102 AYCSW------------------------CHFCQSSANVSKISMPYACKLLFQELTSMNV 1137


>gi|19114602|ref|NP_593690.1| DNA-directed RNA polymerase III complex subunit Rpc2
            [Schizosaccharomyces pombe 972h-]
 gi|1710663|sp|Q10233.1|RPC2_SCHPO RecName: Full=DNA-directed RNA polymerase III subunit RPC2; Short=RNA
            polymerase III subunit 2; Short=RNA polymerase III
            subunit C2; AltName: Full=C128; AltName:
            Full=DNA-directed RNA polymerase III 130 kDa polypeptide;
            AltName: Full=RPC130
 gi|1204209|emb|CAA93558.1| DNA-directed RNA polymerase III complex subunit Rpc2
            [Schizosaccharomyces pombe]
 gi|76782167|gb|ABA54854.1| RNA polymerase III large subunit Rpc2 [Schizosaccharomyces pombe]
          Length = 1165

 Score =  400 bits (1029), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 339/1142 (29%), Positives = 521/1142 (45%), Gaps = 156/1142 (13%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRER-FNFGQFPVMLKTRRCHLQGADSQKLVS 95
             CR   ++Y   +  D+E+     G  VVR R    G+ PVML++ +C L G +  ++ +
Sbjct: 125  ECRLRDLTYGANIYVDIEYT---RGKQVVRRRNVPIGRMPVMLRSNKCVLSGKNEMEMAA 181

Query: 96   LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
            L E   + GGYFI+ G E+V    IL ++    + +      ++  +          RK 
Sbjct: 182  LNECPLDPGGYFIVKGTEKV----ILVQEQLSKNRIIVEAEPKKGLWQASVTSSTHERKS 237

Query: 156  QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
            ++ V  K     NG + L       +  +P+ +VLKA+   +D EIF  L    +  Y+ 
Sbjct: 238  KTYVITK-----NGKLYLKHNSVADD--IPIVVVLKAMGLQSDQEIF-ELVAGAEASYQD 289

Query: 216  EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ-PVIDGLQSESYYAVAETV 274
                + +P + E  K        L++ T  Q L++IG   +     G      +  A  V
Sbjct: 290  ----LFAPSIEECAK--------LNIYTAQQALEYIGARVKVNRRAGANRLPPHEEALEV 337

Query: 275  IRDYIFVHLNDNNDKFN-----LLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
            +   +  H+N  N +F      + I   + L ++VD   V D  D + N+ + L G L+ 
Sbjct: 338  LAAVVLAHINVFNLEFRPKAVYIGIMARRVLMAMVDPLQVDDR-DYVGNKRLELAGQLLA 396

Query: 330  IYLKEKLEDWLRKGKKLIQDEIENNGKK------FDFFNLANIKKVMEKNPSKQIGTSIE 383
            +      ED  +K    ++  I+   KK      FD +N   +        S  I   + 
Sbjct: 397  LLF----EDLFKKFNSDLKLNIDKVLKKPHRTQEFDAYNQLTVH-------SDHITQGMV 445

Query: 384  TMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLL 442
              L TG  + +      +RAG T    RL+++  +     +   + F   R  S  R L 
Sbjct: 446  RALSTGNWSLKRFK--MERAGVTHVLSRLSYISALGMMTRIT--SQFEKTRKVSGPRSLQ 501

Query: 443  PESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMI 502
               +G LC   TP+GE CGL+ ++     + +  +    I+         + V+ G    
Sbjct: 502  ASQFGMLCTSDTPEGEACGLVKNLALMTHITTDEEEEPIIKLAYAFGIEDIHVISG---- 557

Query: 503  PSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVP 562
                +L   G      V L+G ++G+  S      VA  R+L+ S   + P      ++ 
Sbjct: 558  ---RELHSHG---TYLVYLNGAILGI--SRYPSLFVASFRKLRRSG-KISP------FIG 602

Query: 563  LSLGGAYPGLYLFTSPPKFVRP---VRNISLPSEESQNIELIGP----FEQVFME----- 610
            + +      +++ T   +  RP   V+N  LP  ES++I L+      FE    +     
Sbjct: 603  IFINTHQRAVFISTDGGRICRPLIIVQN-GLPKVESKHIRLLKEGKWGFEDFLKQGLVEY 661

Query: 611  IRCPDGGDG----GRRNAFP-ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQ 665
            +   +  D       R+  P  TH EI P  +L  VA L PY  HNQSPRN YQC M KQ
Sbjct: 662  VDVNEENDSLISVYERDITPDTTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQ 721

Query: 666  TMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDME 725
             +G        R D  LY +  PQ P+V+T T    G D+ P G NA VA+++Y+GYD+E
Sbjct: 722  AIGAIAYNQLQRIDTLLYLMVYPQQPMVKTKTIELIGYDKLPAGQNATVAIMSYSGYDIE 781

Query: 726  DAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSL---HSVIDSD 782
            DA++LNKSS+DRG    Q++   ++ +    N         +R+ +   +   H V++ D
Sbjct: 782  DALVLNKSSIDRGFGRCQVFHKHSVIVRKYPNGTHDRIGDPQRDPETGEVVWKHGVVEDD 841

Query: 783  GLPYVGQMIHPGEPYC-----------SIYDKTTNSWRTNSR------KGSESVFVDYVA 825
            GL  VG  + PG+ Y            SI    T +  +  +      K  E  ++D V 
Sbjct: 842  GLAGVGCRVQPGQIYVNKQTPTNALDNSITLGHTQTVESGYKATPMTYKAPEPGYIDKVM 901

Query: 826  VDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDL 885
            +   +S     K  +  R TR P +GDKFSSRHGQKGVC  +    DMPF+   G+ PD+
Sbjct: 902  LTTTDSDQTLIK--VLMRQTRRPELGDKFSSRHGQKGVCGVIVQQEDMPFND-QGICPDI 958

Query: 886  IINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDEL 945
            I+NPH FPSRMT+  ++E ++ K G L G     T F        G    D S+ LV+  
Sbjct: 959  IMNPHGFPSRMTVGKMIELLSGKVGVLRGTLEYGTCFG-------GTKVEDASRILVEH- 1010

Query: 946  GEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQIT 1005
                   G+NY G ++L SG+ G  L   IF+GP+YYQ+L+HMV DK   R+ G    +T
Sbjct: 1011 -------GYNYSGKDMLTSGITGETLEAYIFMGPIYYQKLKHMVMDKMHARARGPRAVLT 1063

Query: 1006 RQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFI 1065
            RQP +GR R GG+R GEMERD L+A+GA+ LL +RL   SD    DVC  CG +      
Sbjct: 1064 RQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLMISSDACDVDVCGQCGLL------ 1117

Query: 1066 HPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
                                K  C++CQ+++ +  + +PY  + L  EL +MNI   L L
Sbjct: 1118 ------------------GYKGWCNSCQSTREVVKMTIPYAAKLLFQELLSMNIVPRLAL 1159

Query: 1126 GD 1127
             D
Sbjct: 1160 ED 1161


>gi|320165828|gb|EFW42727.1| polymerase III polypeptide B [Capsaspora owczarzaki ATCC 30864]
          Length = 1138

 Score =  400 bits (1029), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 336/1134 (29%), Positives = 511/1134 (45%), Gaps = 151/1134 (13%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
             CR   ++Y   +  +VE  Y+     +VR+    G+ P+ML++  C L G    +L  L
Sbjct: 108  QCRLRDMTYAAPITVNVE--YMRGSQKIVRDNLFIGRMPIMLRSSNCILHGKSRAELTKL 165

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCV-RKD 155
             E   + GGYFI+ G+E+V   +++ +Q   +S  R    + R+G    +V      RK 
Sbjct: 166  GECPNDPGGYFIIKGVEKV---ILIQEQ---LSKNRMIIENDRKGIPGASVTSSTQERKS 219

Query: 156  QSSVTLKL--YYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKY 213
            +++V  K   +YL + ++            + V I+ KAL    D EI   +   +++ Y
Sbjct: 220  RTNVVCKAGRFYLKHNTLSED---------INVVILFKALGVETDQEIMQMIG--FEDMY 268

Query: 214  KKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAE- 272
            ++   A              AE  +  +TT+ Q L  +G   +             V E 
Sbjct: 269  QQAIAAT------------FAESIEHGITTQNQALDFVGSRVRLAKRAWGGARKSKVDEA 316

Query: 273  -----TVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
                 ++I  ++ VH  +   K   L  M++++   ++     D+ D   N+ + L G L
Sbjct: 317  RELLASIILAHVPVHKYNFRPKSLYLALMVRRVILALNEALPVDDKDYYGNKRLELAGQL 376

Query: 328  ITIYLKEKLEDWLRKGKKLIQDEI-ENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETML 386
            + +  ++  + +  + KK+    I +    ++D         V++K   + I   +   +
Sbjct: 377  LALLFEDVFKKFNTELKKVTDLTIPKQRATQYD---------VVKKFRPQIISDGLTHAI 427

Query: 387  KTGRLATQT-GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPE 444
             TG    +   +D   R G T    RL+++  +     +   + F   R  S  R L P 
Sbjct: 428  STGNWTVKRFKMD---RGGVTQVLSRLSYISALGMMTRI--SSQFEKTRKVSGPRSLQPS 482

Query: 445  SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
             WG LCP  TP+GE CGL+ ++     + +  D   NI        + L    GV  I  
Sbjct: 483  QWGMLCPSDTPEGEACGLVKNLALMTHITTD-DEESNI--------ARLAFNFGVEDINV 533

Query: 505  LPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSA-----ASVIPDDLEVG 559
            L     +   + L V L+G ++GV     I  +V   R L+         S+ P+D +  
Sbjct: 534  LSAEDLTRDESYL-VFLNGLLLGVTIHPTI--LVRAFRMLRRDGRLSHFLSICPNDRQRC 590

Query: 560  YVPLSLGG--AYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGG 617
                S GG    P + +  + PK    V N  L     + +      +   +E    +  
Sbjct: 591  VYIASDGGRVCRPYIIVDKNGPK----VTNTHLERLAQKVLRFDDFLKLGLIEYLDVNEE 646

Query: 618  DGGRRNAFPA------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSV 671
            +G     + +      TH EI P  +L V A + PY  HNQSPRN YQC M KQ +G   
Sbjct: 647  NGANIAMYESEIKPYTTHLEIEPFTILGVCAGIIPYPHHNQSPRNTYQCAMGKQAIGTIA 706

Query: 672  QALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILN 731
                 R D  LY L  PQ P+V+T T         P G NA VAV++Y+GYD+EDA+ILN
Sbjct: 707  ANQYVRFDTLLYTLLYPQRPMVQTRTIELIDFHNMPAGQNACVAVMSYSGYDIEDALILN 766

Query: 732  KSSVDRGMCHGQIYQTETIDLSDDGNK-VDRGQKLFRRNKDAKSL--HSVIDSDGLPYVG 788
            ++S+DRG     +Y+ +T+ +    N  VDR     R   D+  L    V+D +G+   G
Sbjct: 767  QASLDRGFGRCMVYRKQTVSIKTYPNMLVDRIVAPTRNRDDSSRLAKFDVLDQEGICRPG 826

Query: 789  QMIHPGEPYCSIYDKTTNSWRTN-----------------SRKGSESVFVDYVAVDMKNS 831
            + +  G    ++  K T    +N                 S KG     VD V +   + 
Sbjct: 827  ERVENGS---TLVLKETPVNTSNPIQDPHNAAVQYKPAYVSYKGPCEGVVDKVLLTNNSE 883

Query: 832  KNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHA 891
             N      I  R TR P +GDKFSSRHGQKGVC  +    DMPFS + G+ PD+I+NPH 
Sbjct: 884  DN--HLIKILLRTTRRPEVGDKFSSRHGQKGVCGLIVRQEDMPFSDI-GICPDIIMNPHG 940

Query: 892  FPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRT 951
            FPSRMT+  L+E ++ K G+L GKF   T F        GD   D SK LV+        
Sbjct: 941  FPSRMTVGKLMEFLSGKAGALIGKFHYGTAFG-------GDKVVDMSKILVEH------- 986

Query: 952  CGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKG 1011
             GFNY G + + SG+ G  L+  IF GPVYYQ+L+HMV DK   R+ G    +TRQP +G
Sbjct: 987  -GFNYAGKDFVTSGITGEPLSAYIFFGPVYYQKLKHMVMDKMHARARGPRAVLTRQPTEG 1045

Query: 1012 RKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRA 1071
            R R GG+R GEMERD L+ +GA+ LL +RL   SD     VC  CG +   ++       
Sbjct: 1046 RSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDKFDVHVCRACGLLGYESW------- 1098

Query: 1072 IREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
                             C  C+ S  M  +++PY  + L  EL +MNI   L+L
Sbjct: 1099 -----------------CQYCKASSSMSILSIPYASKLLFQELQSMNIVPRLRL 1135


>gi|303287030|ref|XP_003062804.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226455440|gb|EEH52743.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 1197

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 348/1238 (28%), Positives = 530/1238 (42%), Gaps = 239/1238 (19%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMF--------------------------------- 35
            F  +R LVR HI+SF+Y+++E + ++                                  
Sbjct: 81   FLKVRGLVRQHIDSFNYLINEEIRKIIRAKANERVTCDTDPSFYLRYTNIHVGKPCVEED 140

Query: 36   --------DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN--------FGQFPVMLK 79
                      CR   ++Y   +  D E+     G  +V  + N         G+ P+ML+
Sbjct: 141  YIVEDITPQQCRLRDMTYAAPVTVDAEYT---RGKEIVTRKTNEQGVGGITIGRIPLMLR 197

Query: 80   TRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRR 139
            + RC L G    +L  L E   + GGYF++ G+E+V   V++ +Q   +S  R       
Sbjct: 198  SSRCVLTGKSEDELARLGECPLDPGGYFVVKGVEKV---VLIQEQ---LSKNRIIIDVDA 251

Query: 140  EGYTDKAVVIRC-VRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--------LPVGIVL 190
            +G    +V      RK ++++ +K                GK YL        +P+ + L
Sbjct: 252  KGEIGASVTSSTHERKSKTNIVVK---------------HGKLYLRHNTFVEDVPILVAL 296

Query: 191  KALVDTNDLEIFNHLTCCYDEKYKKEKGAVG-SPLVSERVKIILAEVQDLSLTTRLQCLQ 249
            KA+   +D E+                  VG  P  +  +   L E   L++ T+ Q L+
Sbjct: 297  KAMGTESDQEVVQ---------------LVGPDPAYANLLIPSLQECSALAIFTQQQALE 341

Query: 250  HIGEHF--QPVIDGLQ----SESYYAVAETVIRDYIFVHLN----DNNDKFNLLIFMLQK 299
            + G     Q  + G Q      +    A  ++   +  H+     D   K   +  M+++
Sbjct: 342  YCGAKVRTQSRMGGYQYGRNRRNRVDEARDILAGVVLAHVPVVAYDFRGKCAYVAVMIRR 401

Query: 300  -LFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE----DWLRKGKKLIQDEIENN 354
             L +++D T + D+ D   N+ + L G L+ +  ++  +    D  R+   ++     N 
Sbjct: 402  ILHAMIDRTQI-DDKDYYGNKRLELAGQLLALLFEDCFKRLNADLKRQADAVLSKS--NR 458

Query: 355  GKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNF 414
              +FD      I++    N  +   +S    +K  R+         +R G T    RL+F
Sbjct: 459  ATQFDIIKC--IRQDTLSNGLEHAISSGNWTVKRFRM---------ERKGVTQVLSRLSF 507

Query: 415  LRFISFFRAVHRGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVA 473
            +  +     +   + F   R  S  R L P  WG LCP  TP+GE CGL+ ++     V 
Sbjct: 508  ISALGMMTRIT--SQFEKTRKVSGPRALQPSQWGMLCPSDTPEGESCGLVKNLALMTHVT 565

Query: 474  SYYDSRGNIRDFS-KMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSS 532
            +  D    +R  +  + T  L ++ G  +            P    V L+G ++GV  + 
Sbjct: 566  TD-DEEEPLRKLAFTLGTQPLSLICGAEL----------HAPGGAIVFLNGSILGVHSAP 614

Query: 533  E-IEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAY---PGLYLFTSPPKFVRPVRN- 587
            +   + + +LRR+      V     + G + ++  G     P L +    P   R   + 
Sbjct: 615  DRFARDMRYLRRIGKVGEFVSVHTTQGGRLYIASDGGRVCRPLLIVADGEPLATREHLDE 674

Query: 588  ----------------ISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEE 631
                            +       +NI  I  +E                      TH E
Sbjct: 675  LKAGRWGFNDFLKRGLVEYLDVNEENISYIALYENEITR---------------DHTHLE 719

Query: 632  IHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTP 691
            I P  ML V A + PY  HNQSPRN YQC M KQ MG        R D  +Y L  PQ P
Sbjct: 720  IEPFTMLGVCAGIIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLNRMDTLMYLLVYPQKP 779

Query: 692  IVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETID 751
            IV+T T    G D    G NA VAV++Y+GYD+EDA+++NK+S+DRG     + +     
Sbjct: 780  IVKTKTIELIGYDRLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVLRKYATQ 839

Query: 752  LSDDGNK-VDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYC------------ 798
            +    N+ +DR              H ++D DG+  VG +I+PG+ Y             
Sbjct: 840  VKKYSNRTMDRIVAPTESQAGPTGRHRLLDRDGIASVGTLINPGDVYVNKQSPSNTRDPL 899

Query: 799  --------SIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPII 850
                    + Y  T  S++       ES  VD V + M +      K  +R  HTR P +
Sbjct: 900  PNPHAMPDTFYRPTPQSYKGPQ---GESCVVDKVMLTMTDEGVFNVKCLVR--HTRRPEV 954

Query: 851  GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGG 910
            GDKFSSRHGQKGV   + P  D PFS   G+ PDLI+NPH FPSRMT+  +LE V  K G
Sbjct: 955  GDKFSSRHGQKGVIGTILPQRDFPFSE-RGITPDLIMNPHGFPSRMTVGKMLELVGGKAG 1013

Query: 911  SLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTE 970
            +  G+F D T FA       GDT  D   +LV+         GF+Y+G ++L+ G+ G  
Sbjct: 1014 AQDGRFHDGTAFA-------GDTAEDIGATLVNH--------GFSYNGKDLLHCGITGEP 1058

Query: 971  LTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLA 1030
            L   IF+GPVYYQ+L+HMV DK   R+ G    +TRQP +GR R GG+R GEMERD L+ 
Sbjct: 1059 LVAYIFMGPVYYQKLKHMVLDKMHARARGPRVVLTRQPTEGRARDGGLRLGEMERDCLIG 1118

Query: 1031 HGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCH 1090
            +GA+ L+ +RL   SD   A VC+ CG +           A R  G         K  C 
Sbjct: 1119 YGASALILERLMISSDQFEAQVCNKCGLL-----------AYRHHG-------TGKDACA 1160

Query: 1091 ACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGDG 1128
             C+ +  +  + +PY  + L  EL +MNI   L L D 
Sbjct: 1161 QCEDAD-VSALKLPYACKLLFQELQSMNICPRLTLSDA 1197


>gi|125843259|ref|XP_690811.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform 2
            [Danio rerio]
          Length = 1130

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 331/1149 (28%), Positives = 521/1149 (45%), Gaps = 180/1149 (15%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
             CR   ++Y+  +  D+E  Y      ++R     G+ P+ML++  C L G    +   L
Sbjct: 99   ECRLRDMTYSAPITVDIE--YTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPMEFSKL 156

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC-VRKD 155
             E   + GGYFI+ G E+V   +++ +Q   +S  R      R+G    +V      +K 
Sbjct: 157  NECPLDPGGYFIVKGQEKV---ILIQEQ---LSKNRIIVDQDRKGTVGASVTSSTHEKKS 210

Query: 156  QSSVTLKLYYLLNGSVRLGFWLQGKEYL--------LPVGIVLKALVDTNDLEIFNHLTC 207
            ++++ +K               QG+ YL         P+ I+ KA+   +D EI   +  
Sbjct: 211  RTNMIVK---------------QGRFYLKHNTLSEDAPIAIIFKAMGVESDQEIVQMIGT 255

Query: 208  CYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ-PVIDGLQSES 266
                  ++   A  +P         L E Q   + T+ Q L++IG   +   + G   ++
Sbjct: 256  ------EEHVMAAFAP--------SLEECQKAQIFTQTQALRYIGNKVRRQRMWGGPKKT 301

Query: 267  YYAVAETVIRDYIFVHLNDNNDKFN----LLIFMLQKLFSLVDHTSVSDNPDSLQNQEIL 322
                A  ++   I  H+      F      L  M++++  L    +  D+ D   N+ + 
Sbjct: 302  KMEEARELLASTILTHVPVKEFNFRAKCIYLAVMVRRVI-LAQGDNKVDDRDYYGNKRLE 360

Query: 323  LPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSI 382
            L G L+++  ++  + +  + KK I D+I    +   F    ++ K M ++   QI   +
Sbjct: 361  LAGQLLSLLFEDLFKKFNSELKK-IADQIIPKQRAAQF----DVVKHMRQD---QITNGM 412

Query: 383  ETMLKTGRLATQT-GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRK 440
               + TG  + +   +D   R G T    RL+F+  +     +   + F   R  S  R 
Sbjct: 413  VNAISTGNWSLKRFKMD---RQGVTQVLSRLSFISALGMMTRI--SSQFEKTRKVSGPRS 467

Query: 441  LLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVG 500
            L P  WG LCP  TP+GE CGL+ ++     + +  +    I+    +    + +L G  
Sbjct: 468  LQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLAFNLGVEDVNLLCGEE 527

Query: 501  MIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGY 560
            +            P V  V L+G ++GVI   + +K+V   R ++   A  I +     +
Sbjct: 528  L----------SYPTVFLVFLNGNILGVI--RDHQKLVYTFRLMR--RAGFINE-----F 568

Query: 561  VPLSLGGAYPGLYLFTSPPKFVRP---VRNISLPSEESQNIELIG----PFEQVFME--I 611
            V +S       +Y+ +   +  RP   V+N   P+ ++++IE +      FE    E  +
Sbjct: 569  VSISTNLTDRCVYISSDGGRLCRPYIIVKN-GKPAVKNKHIEELSQGYRTFEDFLHESLV 627

Query: 612  RCPDGGDGGRRN--------AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMA 663
               D  +    N        +   TH EI P  +L V A L PY  HNQSPRN YQC M 
Sbjct: 628  EYLDVNEENDCNIALYEHMISKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMG 687

Query: 664  KQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYD 723
            KQ MG      + R D  +Y L  PQ P+V+T T      ++ P G NA VAV++Y+GYD
Sbjct: 688  KQAMGTIGYNQRNRIDTLMYLLAYPQRPMVKTKTIELIDFEKLPAGQNATVAVMSYSGYD 747

Query: 724  MEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR--GQKLFRRNKDAKSLHSVID 780
            +EDA++LNK+S+DRG     +Y+     L    N+  D+  G  L    +     HS++D
Sbjct: 748  IEDALVLNKASLDRGFGRCLVYKNAKCTLRRYTNQTFDKVMGPMLDAETRKPIWRHSILD 807

Query: 781  SDGLPYVGQMI-----------------------HPGEPYCSIYDKTTNSWRTNSRKGSE 817
            +DG+   G+ +                        PG+P    Y +   S+     KG+ 
Sbjct: 808  ADGICSPGEKVENKQVLVNKSMPTVTQTPLEGSAQPGQPQ---YREVPVSY-----KGAT 859

Query: 818  SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
              +++ V +          K  I  R TR P IGDKFSSRHGQKGVC  + P  DMPF  
Sbjct: 860  DSYIEKVMISSNAEDAFLVK--ILLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCD 917

Query: 878  VTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDE 937
             +G+ PD+I+NPH +PSRMT+  L+E +A K G L G+F   T F  S            
Sbjct: 918  -SGICPDIIMNPHGYPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSK----------- 965

Query: 938  SKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRS 997
                V ++ E L   G+NY G + + SG+ G  L   I+ GPVYYQ+L+HMV DK   R+
Sbjct: 966  ----VKDVCEDLIRYGYNYQGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARA 1021

Query: 998  TGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCG 1057
             G    +TRQP +GR R GG+R GEMERD L+ +GA+ LL +RL   SD    DVC  CG
Sbjct: 1022 RGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCG 1081

Query: 1058 SVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAM 1117
             +  + +                        CH C++S  + ++ +PY  + L  EL +M
Sbjct: 1082 LLGYSGW------------------------CHYCKSSCHVSSLRIPYACKLLFQELQSM 1117

Query: 1118 NIKITLQLG 1126
            NI   L+L 
Sbjct: 1118 NIIPRLKLA 1126


>gi|17647877|ref|NP_523706.1| RNA polymerase III 128kD subunit [Drosophila melanogaster]
 gi|78099797|sp|P25167.2|RPC2_DROME RecName: Full=DNA-directed RNA polymerase III subunit RPC2; Short=RNA
            polymerase III subunit C2; AltName: Full=DNA-directed RNA
            polymerase III 128 kDa polypeptide; Short=C128
 gi|7303535|gb|AAF58590.1| RNA polymerase III 128kD subunit [Drosophila melanogaster]
 gi|220943532|gb|ACL84309.1| RpIII128-PA [synthetic construct]
          Length = 1137

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 332/1141 (29%), Positives = 511/1141 (44%), Gaps = 181/1141 (15%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR    +Y+  +  D+E  Y      + R     G+ P+ML+   C L G    +L  L 
Sbjct: 110  CRLRDTTYSAPITVDIE--YTRGTQRIKRNNLLIGRMPLMLRCSNCALTGKSEFELSKLN 167

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC----VR 153
            E   + GGYF++ G E+V   +++ +Q     M+   F            V++C      
Sbjct: 168  ECPLDPGGYFVVRGQEKV---ILIQEQLSWNKMLTEDFNG----------VVQCQVTSST 214

Query: 154  KDQSSVTLKL-----YYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
             ++ S TL L     YYL + S+            +P+ ++ KAL   +D EI + +   
Sbjct: 215  HEKKSRTLVLSKHGKYYLKHNSMTDD---------IPIVVIFKALGVVSDQEIQSLIGI- 264

Query: 209  YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIG-----EHFQPVIDGLQ 263
             D K +   GA             L +  +L + T+ + L+++G     + FQ       
Sbjct: 265  -DSKSQNRFGAS------------LIDAYNLKVFTQQRALEYMGSKLVVKRFQSATTKTP 311

Query: 264  SESYYAVAETVIRDYIFVHLNDNNDKFNLLI------FMLQKLFSLVDHTSVSDNPDSLQ 317
            SE    +  T I  ++ V      D FNL +       M++++ +     ++ D+ D   
Sbjct: 312  SEEARELLLTTILAHVPV------DNFNLQMKAIYVSMMVRRVMAAELDKTLFDDRDYYG 365

Query: 318  NQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIEN-NGKKFDFFNLANIKKVMEKNPSK 376
            N+ + L G L+++  ++  +    + K +    I      +FD         V++   + 
Sbjct: 366  NKRLELAGSLLSMMFEDLFKRMNWELKTIADKNIPKVKAAQFD---------VVKHMRAA 416

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
            QI   +E+ + +G    +      +RAG T    RL+++  +     V+  + F   R  
Sbjct: 417  QITAGLESAISSGNWTIKRFK--MERAGVTQVLSRLSYISALGMMTRVN--SQFEKTRKV 472

Query: 437  S-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV 495
            S  R L P  WG LCP  TP+GE CGL+ ++     + +  + R            I+  
Sbjct: 473  SGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVEERP---------VMIVAF 523

Query: 496  LIGVGMIPSLPKLVKSGP---PAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVI 552
              GV  I    + V   P   P V  V ++G V+G+  + +   +V +LR ++       
Sbjct: 524  NAGVEDI----REVSGNPINNPNVFLVFINGNVLGLTLNHK--HLVRNLRYMRRKG---- 573

Query: 553  PDDLEVG-YVPLSLGGAYPGLYLFTSPPKFVRP---VRNISLPSEESQNIEL---IGPFE 605
                 +G YV +        +Y+ T   +  RP   V N     ++    EL   I  F+
Sbjct: 574  ----RMGSYVSVHTSYTQRCIYIHTDGGRLCRPYVIVENRRPLVKQHHLDELNRGIRKFD 629

Query: 606  QVFMEIRCPDGGDGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPR 655
               ++            ++F A          TH EI P  +L V A L PY  HNQSPR
Sbjct: 630  DFLLDGLIEYLDVNEENDSFIAWNEDQIEDRTTHLEIEPFTLLGVCAGLVPYPHHNQSPR 689

Query: 656  NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
            N YQC M KQ MG      K R D  +Y+L  P  P+V++ T      D+ P G NA VA
Sbjct: 690  NTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPHAPMVKSKTIELTNFDKLPAGQNATVA 749

Query: 716  VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DRGQKLFRRNKDAKS 774
            V++Y+GYD+EDA+ILNK+S+DRG     +Y+     +    N+  DR     +     K 
Sbjct: 750  VMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDRIMGPMKDALTNKV 809

Query: 775  L--HSVIDSDGLPYVGQ-------MIHPGEPYCSIYD-------KTTNSWRTNSRKGSES 818
            +  H V+D+DG+   G+       MI+   P  +  +       +   +    S KG E 
Sbjct: 810  IFKHDVLDTDGIVAPGEQVQNKQIMINKEMPAVTSMNPLQGQSAQVPYTAVPISYKGPEP 869

Query: 819  VFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGV 878
             +++ V V     ++   K  I  R TR P IGDKFSSRHGQKGV   +    DMPF+  
Sbjct: 870  SYIERVMVSANAEEDFLIK--ILLRQTRIPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDF 927

Query: 879  TGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDES 938
             G+ PD+I+NPH FPSRMT+   LE +  K G L GKF   T F  S             
Sbjct: 928  -GICPDMIMNPHGFPSRMTVGKTLELLGGKAGLLEGKFHYGTAFGGSK------------ 974

Query: 939  KSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRST 998
               V+++   L   GFNY G +  YSG+ GT L   I+ GPVYYQ+L+HMV DK   R+ 
Sbjct: 975  ---VEDIQAELERHGFNYVGKDFFYSGITGTPLEAYIYSGPVYYQKLKHMVQDKMHARAR 1031

Query: 999  GTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGS 1058
            G    +TRQP +GR R GG+R GEMERD L+++GA+ L+ +RL   SD    DVC  CG 
Sbjct: 1032 GPKAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMISSDAFEVDVCRTCGR 1091

Query: 1059 VLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMN 1118
            +   ++                        CH CQ+S  +  ++MPY  + L  EL +MN
Sbjct: 1092 MAYCSW------------------------CHFCQSSANVSKISMPYACKLLFQELTSMN 1127

Query: 1119 I 1119
            +
Sbjct: 1128 V 1128


>gi|15208247|dbj|BAB63148.1| hypothetical protein [Macaca fascicularis]
          Length = 441

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 216/463 (46%), Positives = 285/463 (61%), Gaps = 24/463 (5%)

Query: 525 VVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGA-YPGLYLFTSPPKFVR 583
           +VG +       +   LR  KV     IP  +EV  +P++   + YPGL+LFT+P + VR
Sbjct: 1   MVGWVDKELAPGIADSLRHFKVLREKRIPPWMEVVLIPMTGKPSLYPGLFLFTTPCRLVR 60

Query: 584 PVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVAN 643
           PV+N+ L  EE     LIG  EQ+FM +   +        A   TH+E+ P  +LSV+AN
Sbjct: 61  PVQNLELGKEE-----LIGTMEQIFMNVAIFED----EVFAGVTTHQELFPHSLLSVIAN 111

Query: 644 LTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGI 703
             P+SDHNQSPRNMYQCQM KQTMGF +   + R+D KLY LQTPQ+P+VR + Y  Y +
Sbjct: 112 FIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDM 171

Query: 704 DEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQ 763
           D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG  HG +Y++E IDLS+   + D   
Sbjct: 172 DNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSL 231

Query: 764 KLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDY 823
               +  D + L   +D DGLP++G  +  G+PY S  +  T        K  E+  VD 
Sbjct: 232 VFGIKPGDPRILQK-LDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDN 290

Query: 824 VAVDMKNSKNLPQK-ANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMR 882
           + V   ++ +   K   I  R  RNP IGDKF+SRHGQKG+ S+LWP  DMPF+  +GM 
Sbjct: 291 IKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTE-SGMV 349

Query: 883 PDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLV 942
           PD++ NPH FPSRMTI ML+ES+A K  +LHG   DATPF  S           E  S +
Sbjct: 350 PDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFS-----------EENSAL 398

Query: 943 DELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRL 985
           +  GEML+  G+N++G E LYSG+ G EL  +IFIG VYYQR 
Sbjct: 399 EYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRF 441


>gi|402220302|gb|EJU00374.1| subunit of DNA dependent RNA-polymerase [Dacryopinax sp. DJM-731 SS1]
          Length = 1151

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 336/1236 (27%), Positives = 538/1236 (43%), Gaps = 228/1236 (18%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMF--------------------------------- 35
            F  ++ LV+ H++SF+Y +D  L ++                                  
Sbjct: 28   FLKVKGLVKQHVDSFNYFVDVDLQQILRANNLVTSDVDPRFYIKYTHIAVGPPERADPDQ 87

Query: 36   -----------DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCH 84
                         CR    +Y+G++  +VE  Y+     ++R     G+ P+ML++ +C 
Sbjct: 88   GESPERFSVTPHECRLRDTTYSGRITVNVE--YIRGNKKIIRRGIEIGRLPIMLRSNKCV 145

Query: 85   LQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTD 144
            L G    +L  ++E   + GGYF++ G E+V    IL ++        S  R   E    
Sbjct: 146  LTGKSEAELARMQECPLDPGGYFVVKGTEKV----ILVQEQL------SKNRIIVETDPS 195

Query: 145  KAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--------LPVGIVLKALVDT 196
            K VV+  V         K Y L           + K YL        +P+ IVLKA+   
Sbjct: 196  KGVVMASVTSSTHERKSKTYVLTK---------KNKIYLKHNSVTEDIPICIVLKAVGVQ 246

Query: 197  NDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEH-- 254
            +D EI   L C ++E+Y++   A             L +   L + T+ Q L+++G    
Sbjct: 247  SDKEIL-QLVCGHNEEYRESFAAN------------LEDAARLGVFTQRQALEYMGSRVK 293

Query: 255  ------FQPVIDGLQ-------SESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLF 301
                  F   + G Q        E+  A+A T++  ++ +   D   K   +  M++++ 
Sbjct: 294  VNRPRPFGAPLAGTQGPRRPAWEEAMEALA-TIVLAHVEMEGLDFRPKAVYIAVMVRRVL 352

Query: 302  SLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFF 361
              +    + D+ D + N+ + L G L+ + L E L     +  K+  D++     + + +
Sbjct: 353  MAMKDEKLVDDRDYVGNKRLELAGQLLAL-LFEDLFKKFNQDLKMNIDKVLKKPSRTEEY 411

Query: 362  NLANIKKVMEKNPSKQIGTSIETMLKTGRLATQT-GLDLQQRAGYTVQAERLNFLRFISF 420
            ++  IK +     S+ I       + TG  + +   +D   RAG T    RL+F+  +  
Sbjct: 412  DV--IKALTFHAQSEGITQGFIRAISTGNWSLKRFKMD---RAGVTHVLSRLSFVSALGM 466

Query: 421  FRAVHRGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSR 479
               +   + F   R  S  R L P  WG LCP  TP+GE CGL+ ++     + +  +  
Sbjct: 467  MTRIT--SQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVEEE 524

Query: 480  GNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGP----PAVLSVLLDGRVVGVIPSSEIE 535
              +R         +  ++GV  I      + +GP    P    V ++G ++G+  + +  
Sbjct: 525  PIVR---------VAFMLGVEDIN-----LATGPEIHHPDTFMVNVNGSIIGL--TRQPG 568

Query: 536  KVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNIS--LPSE 593
            + V  LR+L+   A  I +     +V + +   +  +++     +  RP+  +    P  
Sbjct: 569  RFVVALRKLR--RAGRISE-----FVSVYINHHHKTVHIAADGGRICRPMIIVEKGRPRV 621

Query: 594  ESQNIELIGPFEQVFME------IRCPDGGDGG-------RRNAFPAT-HEEIHPTGMLS 639
               +I+L+      F +      +   D  +          R   P T H EI P  +L 
Sbjct: 622  TEDHIKLLKKGHVTFDDFLRKGLVEYLDVNEENDSYIALYEREILPTTTHLEIEPFTILG 681

Query: 640  VVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYT 699
             VA L PY  HNQSPRN YQC M KQ +G        R D  LY +  PQ P+V+T T  
Sbjct: 682  AVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQFRRIDTLLYVMVYPQQPMVKTRTIE 741

Query: 700  KYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV 759
                D+ P G NA VAV++Y+GYD+EDA ++N++S+DRG    Q+Y+     +    N  
Sbjct: 742  LINYDKLPAGQNATVAVMSYSGYDIEDASMINRASLDRGYGRCQVYRKNVTLIRKYPNGT 801

Query: 760  DRGQKLFRRNKDAK---------SLHSVIDSDGLPYVGQMIHPGEPYC---SIYDKTTNS 807
                  F R  DA            +S + +DG+  VG+ + PG+ Y    S  +   NS
Sbjct: 802  ------FDRLADAPIDEVTGRPPDKYSALQADGIAGVGEQLRPGDVYINKQSPANANDNS 855

Query: 808  WRTNSRKGSESVFVDYVAVDMK---------------NSKNLPQKANIRFRHTRNPIIGD 852
            +  N    + +  V Y    M                 ++N      +  R TR P +GD
Sbjct: 856  FNANVLDSTSTSLVQYKNTPMTYRSPVGGIVDKVMLTETENDQTLVKVLIRQTRRPELGD 915

Query: 853  KFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSL 912
            KFSSRHGQKGVC  +  + DMPF+   G++PD+I NPH  PSRMT+  ++E +A K G L
Sbjct: 916  KFSSRHGQKGVCGLIINEEDMPFND-QGIKPDVIFNPHGMPSRMTVGKMIELLAGKAGVL 974

Query: 913  HGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELT 972
             GK    T F  S                V+++ ++L   GFNY G + L SG+ G  + 
Sbjct: 975  KGKLQYGTAFGGSK---------------VEDMSQILIEKGFNYAGKDYLTSGLTGEPME 1019

Query: 973  CEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHG 1032
              ++ GP+YYQ+L+HMV DK   R+ G    +TRQP +GR R GG+R GEMERD L+ +G
Sbjct: 1020 AYVYFGPIYYQKLKHMVMDKMHSRARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYG 1079

Query: 1033 AAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHAC 1092
            A  LL +RL   SD    + C  CG +    +                        C  C
Sbjct: 1080 ATQLLLERLMISSDAFEINACQECGLLGYNGW------------------------CPLC 1115

Query: 1093 QTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGDG 1128
            ++SK +  + +PY  + L  EL AMN+   L L D 
Sbjct: 1116 KSSKRVAKLTIPYAAKLLFQELMAMNVVPRLILDDA 1151


>gi|390596427|gb|EIN05829.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Punctularia strigosozonata HHB-11173 SS5]
          Length = 1143

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 338/1213 (27%), Positives = 532/1213 (43%), Gaps = 203/1213 (16%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
            F  ++ LV+ HI+SF+Y +D  +  +                                  
Sbjct: 41   FLKVKGLVKQHIDSFNYFVDVDIKNILKANNKVTSDVDPRFWLKYTDIHVGFPDRTDADA 100

Query: 37   --------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGA 88
                     CR    +Y+  ++  V  QY    S V R   + G+ P+ML++ +C L G 
Sbjct: 101  IDKSVTPHECRLRDTTYSAPIL--VTIQYTRGKSVVRRPNVSIGRIPIMLRSNKCVLTGR 158

Query: 89   DSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVV 148
            +  +L  + E   + GGYF++ G E+V    IL ++    + +       ++      V 
Sbjct: 159  NEAQLARMLECPLDPGGYFVVKGTEKV----ILVQEQLSKNRIIVETDPVKD-----VVQ 209

Query: 149  IRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--------LPVGIVLKALVDTNDLE 200
              C       +  K Y             +GK YL        +P+ I LKAL    D E
Sbjct: 210  ASCTSSTHGGLKSKTYVATK---------KGKIYLRHNSIHEDVPIVIALKALGFQADKE 260

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQP--V 258
            I   LT    E YK    +  SP + E  K        L + TR Q L++IG   +    
Sbjct: 261  IL-LLTAGNSEVYK----SAFSPNLEEAAK--------LGVFTRHQALEYIGSRVKVNRR 307

Query: 259  IDGLQSESYYAVAE---TVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
            + G +  ++    E   T++  ++ V+  D   K   +  M +++   +    + D+ D 
Sbjct: 308  VIGPRRPAWEEAMEALATIVLAHVPVNGLDFRPKAIFVATMTRRVLMAMADEKMVDDRDY 367

Query: 316  LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPS 375
            + N+ + L G L+ +  ++  + +    K  I D++     + + F+  N  + M     
Sbjct: 368  VGNKRLELAGQLLALLFEDLFKTFNSNLKSAI-DKVLKKPSRTNEFDAWNTMQFM----G 422

Query: 376  KQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
              I +     + TG  + +      +RAG T    RL+F+  +     +   + F   R 
Sbjct: 423  DHITSGFVRAISTGNWSLKRFK--MERAGVTHVLSRLSFISALGMMTRI--SSQFEKTRK 478

Query: 436  TS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILR 494
             S  R L P  WG LCP  TP+GE CGL+ ++     + +  +    IR         + 
Sbjct: 479  VSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVEEEPIIR---------IA 529

Query: 495  VLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPD 554
             L+GV  I  L    +   P    V ++G ++G+  +    + V++ R+L+ +       
Sbjct: 530  YLLGVEDI-CLASGAEVYGPHTFVVHVNGTIIGL--TRYPARFVSNFRKLRRAGRFS--- 583

Query: 555  DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNIS--LPSEESQNIELIGPFE---QVFM 609
                 +V + +   +  +++ T   +  RP+  +    P   S +I L+   +     F+
Sbjct: 584  ----EFVSIYVNHHHSTVHIATDGGRICRPMIIVENQRPRVTSDHILLLKKGQVNFDDFL 639

Query: 610  EIRCPDGGDGGRRN-----------AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMY 658
            +    +  D    N               TH EI P  +L  VA L PY  HNQSPRN Y
Sbjct: 640  KKGLVEYLDVNEENDSYIALYEANIVSSTTHLEIEPFTILGAVAGLIPYPHHNQSPRNTY 699

Query: 659  QCQMAKQTMGFSVQALKF----RADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIV 714
            QC M KQ +G    A+ F    R +  LY    PQ P+V+T T    G D+ P G NA V
Sbjct: 700  QCAMGKQAIG----AIGFNQLNRIETLLYLHCYPQQPMVKTKTIELIGYDKLPAGQNATV 755

Query: 715  AVLAYTGYDMEDAMILNKSSVDRGMCHGQIY-QTETIDLSDDGNKVDR-GQKLFRRNKDA 772
            AV++Y+GYD+EDA+ILNK+S+DRG    Q+  + +T+         DR        N   
Sbjct: 756  AVMSYSGYDIEDALILNKASLDRGYGRCQVLRKNQTLIRKYPNGTFDRLADAPVDENGGV 815

Query: 773  KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSE--------------- 817
            +  + +I  DGL  VG+ + PG+ Y  I  +T  +   N+  G                 
Sbjct: 816  QKKYDIIQMDGLAGVGERVDPGDVY--INKQTPTNANDNAFVGQAASVPYKNAPMTYKSP 873

Query: 818  -SVFVDYVAV-DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPF 875
             S ++D V + D +N + L     +  R TR P +GDKFSSRHGQKGVC  +    DMPF
Sbjct: 874  VSGYIDKVMITDTENEQTL---IKVLMRQTRRPELGDKFSSRHGQKGVCGLIVNQEDMPF 930

Query: 876  SGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGT 935
            +   G+ PD I+NPH FPSRMT+  ++E +A K G L GK    T F  S          
Sbjct: 931  ND-QGIVPDSIMNPHGFPSRMTVGKMIELLAGKAGVLSGKLQYGTAFGGSK--------- 980

Query: 936  DESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQV 995
                  V+++  +L   GFNY G ++L SG+ G ++   ++ GP+YYQ+L+HMV DK   
Sbjct: 981  ------VEDMSRILIENGFNYAGKDMLTSGITGEQMEAYVYFGPIYYQKLKHMVMDKMHA 1034

Query: 996  RSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSL 1055
            R+ G    +TRQP +GR R GG+R GEMERD L+ +GA  LL +RL   SD    + C+ 
Sbjct: 1035 RARGPRATLTRQPTEGRSREGGLRLGEMERDCLIGYGATQLLLERLMISSDKFEVNACAE 1094

Query: 1056 CGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELA 1115
            CG +    +                        C  C++SK M  + +PY  + L  EL 
Sbjct: 1095 CGLMGYNGW------------------------CTYCKSSKKMAQLTIPYAAKLLFQELM 1130

Query: 1116 AMNIKITLQLGDG 1128
            AMN+   L+L D 
Sbjct: 1131 AMNVVPRLELDDA 1143


>gi|170097637|ref|XP_001880038.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164645441|gb|EDR09689.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1142

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 338/1210 (27%), Positives = 525/1210 (43%), Gaps = 198/1210 (16%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLS----------------------------------EM 34
            F  ++ LV+ HI+SF+Y +D  +                                   E 
Sbjct: 41   FLKVKGLVKQHIDSFNYFVDIDIKNIVRANNKVTSDVDPRFWLKYTDINVGFPDRNELEA 100

Query: 35   FD------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGA 88
             D       CR   I+Y   ++  +++     G  +V+   N G+ P+ML++ +C L G 
Sbjct: 101  IDKRVTPHECRLRDITYGAPIVVTIQYT---RGKSIVQRNVNIGRLPIMLRSSKCVLTGR 157

Query: 89   DSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVV 148
               +L  + E   + GGYF++ G E+V    IL ++        S  R   E  T K VV
Sbjct: 158  TEAQLARMTECPLDPGGYFVVKGTEKV----ILVQEQL------SKNRIIVETDTVKGVV 207

Query: 149  -IRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--------LPVGIVLKALVDTNDL 199
               C       +  K Y             +G+ YL        +P+ I LKAL   +D 
Sbjct: 208  QASCTSSTHGGLKSKTYVATK---------KGRIYLRHNSIHEDVPIVIALKALGIQSDK 258

Query: 200  EIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ--P 257
            EI   LT    E YK    A             L +   L + TR Q L++IG   +   
Sbjct: 259  EIL-LLTAGTTEAYKNTFSAN------------LEDAAKLGVYTRQQALEYIGSRVKINR 305

Query: 258  VIDGLQSESYYAVAE---TVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPD 314
             + G +  ++    E   T++  ++ V+  D   K   +  M +++   +   ++ D+ D
Sbjct: 306  RVMGPRRPAWEEALEALATIVLAHVPVNGLDFRSKAIFVATMTRRVLMAMQDENMVDDRD 365

Query: 315  SLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGK--KFDFFNLANIKKVMEK 372
             + N+ + L G L+ +  ++  + +    K  I   ++   +  +FD +N   ++     
Sbjct: 366  YVGNKRLELAGQLLALLFEDLFKTYNSNLKIAIDKVLKKPSRTSEFDAYNTMQMQ----- 420

Query: 373  NPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAG 432
                 + +     + TG  + +      +RAG T    RL+F+  +     +   + F  
Sbjct: 421  --GDHLTSGFVRAISTGNWSLKRFK--MERAGVTHVLSRLSFISALGMMTRI--SSQFEK 474

Query: 433  LRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS 491
             R  S  R L P  WG LCP  TP+GE CGL+ ++     + +         D  +   +
Sbjct: 475  TRKVSGPRALQPSQWGVLCPSDTPEGEACGLVKNLALMTHITT---------DVEEEPIT 525

Query: 492  ILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV 551
             L  ++G+  I +L    +   P V  V ++G ++GV  +    + VA  R L+ +    
Sbjct: 526  RLAFMLGIEDI-NLTTGTEIYGPGVFVVNVNGTIIGV--TRYPARFVAQFRSLRRARRFS 582

Query: 552  IPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNIS-----LPSEESQNIELIGPFEQ 606
                    +V + +   +  +++ +   +  RP   +      + SE   +++       
Sbjct: 583  -------EFVSVYINHHHHAVHIASDGGRICRPAIIVENGRPKVASEHMMHLKKGNVTFD 635

Query: 607  VFMEIRCPDGGDGGRRN----------AFPAT-HEEIHPTGMLSVVANLTPYSDHNQSPR 655
             F+     +  D    N            PAT H EI P  +L  VA L PY  HNQSPR
Sbjct: 636  DFLRKGLVEYLDVNEENDTYIALYESDIVPATTHLEIEPFTILGAVAGLIPYPHHNQSPR 695

Query: 656  NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
            N YQC M KQ +G        R D  LY    PQ P+V+T T    G D  P G NA VA
Sbjct: 696  NTYQCAMGKQAIGAIGYNQMNRIDTLLYLSVYPQQPMVKTKTIELIGYDRLPAGQNATVA 755

Query: 716  VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGN-KVDR-GQKLFRRNKDAK 773
            V++Y+GYD+EDA+ILNK+S+DRG    Q+ +     +    N   DR        N    
Sbjct: 756  VMSYSGYDIEDALILNKASLDRGYGRCQVLRKNATLIRKYPNGTFDRLADAPLDENGQLN 815

Query: 774  SLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVF------------- 820
              + +I SDGL  VG+ + PG+ Y +    T  +  T + + +   +             
Sbjct: 816  KKYDIIQSDGLAGVGERVDPGDVYVNKQSPTNATDNTFTGQAASVPYKNTPLTYKSPVAG 875

Query: 821  -VDYVAV-DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGV 878
             +D V + D +N + L +   +  R TR P +GDKFSSRHGQKGVC  +    DMPF+  
Sbjct: 876  NIDKVMISDTENDQTLIK---VLIRQTRRPELGDKFSSRHGQKGVCGLIVNQEDMPFND- 931

Query: 879  TGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDES 938
             G+ PD I+NPH FPSRMT+  ++E +A K G L GK    T F        G    D S
Sbjct: 932  DGINPDTIMNPHGFPSRMTVGKMIELLAGKAGVLAGKLQYGTAFG-------GSKVEDMS 984

Query: 939  KSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRST 998
            + L+D         GF+Y G ++L SG+ G  L   ++ GP+YYQ+L+HMV DK   R+ 
Sbjct: 985  RILIDH--------GFSYAGKDMLTSGITGEPLEAYVYFGPIYYQKLKHMVMDKMHARAR 1036

Query: 999  GTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGS 1058
            G    +TRQP +GR R GG+R GEMERD L+ +GA  LL +RL   SD    + C  CG 
Sbjct: 1037 GPRATLTRQPTEGRSREGGLRLGEMERDCLIGYGATQLLLERLMISSDKFEVNACEECGL 1096

Query: 1059 VLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMN 1118
            +    +                        C  C++SK M  + +PY  + L  EL AMN
Sbjct: 1097 MGYNGW------------------------CTYCKSSKKMAQLTIPYAAKLLFQELMAMN 1132

Query: 1119 IKITLQLGDG 1128
            +   L L D 
Sbjct: 1133 VVPRLILDDA 1142


>gi|195333588|ref|XP_002033472.1| GM21328 [Drosophila sechellia]
 gi|195582601|ref|XP_002081115.1| GD10835 [Drosophila simulans]
 gi|194125442|gb|EDW47485.1| GM21328 [Drosophila sechellia]
 gi|194193124|gb|EDX06700.1| GD10835 [Drosophila simulans]
          Length = 1137

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 331/1141 (29%), Positives = 511/1141 (44%), Gaps = 181/1141 (15%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR    +Y+  +  D+E  Y      + R     G+ P+ML+   C L G    +L  L 
Sbjct: 110  CRLRDTTYSAPITVDIE--YTRGTQRIKRNNLLIGRMPLMLRCSNCALTGKSEFELSKLN 167

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC----VR 153
            E   + GGYF++ G E+V   +++ +Q     M+   F            V++C      
Sbjct: 168  ECPLDPGGYFVVRGQEKV---ILIQEQLSWNKMLTEDFNG----------VVQCQVTSST 214

Query: 154  KDQSSVTLKL-----YYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
             ++ S TL L     YYL + S+            +P+ ++ KAL   +D EI + +   
Sbjct: 215  HEKKSRTLVLSKHGKYYLKHNSMTDD---------IPIVVIFKALGVVSDQEIQSLIGL- 264

Query: 209  YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIG-----EHFQPVIDGLQ 263
             D K +   GA             L +  +L + T+ + L+++G     + FQ       
Sbjct: 265  -DSKSQNRFGAS------------LIDAYNLKVFTQQRALEYMGSKLVVKRFQSATTKTP 311

Query: 264  SESYYAVAETVIRDYIFVHLNDNNDKFNLLI------FMLQKLFSLVDHTSVSDNPDSLQ 317
            SE    +  T I  ++ V      D FNL +       M++++ +     ++ D+ D   
Sbjct: 312  SEEARELLLTTILAHVPV------DNFNLQMKAIYVSMMVRRVMAAELDKTLFDDRDYYG 365

Query: 318  NQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIEN-NGKKFDFFNLANIKKVMEKNPSK 376
            N+ + L G L+++  ++  +    + K +    I      +FD         V++   + 
Sbjct: 366  NKRLELAGSLLSMMFEDLFKRMNWELKTIADKNIPKVKAAQFD---------VVKHMRAA 416

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
            QI   +E+ + +G    +      +RAG T    RL+++  +     V+  + F   R  
Sbjct: 417  QITAGLESAISSGNWTIKRFK--MERAGVTQVLSRLSYISALGMMTRVN--SQFEKTRKV 472

Query: 437  S-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV 495
            S  R L P  WG LCP  TP+GE CGL+ ++     + +  + R            I+  
Sbjct: 473  SGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVEERP---------VMIVAF 523

Query: 496  LIGVGMIPSLPKLVKSGP---PAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVI 552
              GV  I    + V   P   P V  V ++G V+G+  + +   +V +LR ++       
Sbjct: 524  NAGVEDI----REVSGNPINNPNVFLVFINGNVLGLTLNHK--HLVRNLRYMRRKG---- 573

Query: 553  PDDLEVG-YVPLSLGGAYPGLYLFTSPPKFVRP---VRNISLPSEESQNIEL---IGPFE 605
                 +G YV +        +Y+ T   +  RP   V N     ++    EL   I  F+
Sbjct: 574  ----RMGSYVSVHTSYTQRCIYIHTDGGRLCRPYVIVENRRPLVKQHHLDELNRGIRKFD 629

Query: 606  QVFMEIRCPDGGDGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPR 655
               ++            ++F A          TH EI P  +L V A L PY  HNQSPR
Sbjct: 630  DFLLDGLIEYLDVNEENDSFIAWNEDQIEDRTTHLEIEPFTLLGVCAGLVPYPHHNQSPR 689

Query: 656  NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
            N YQC M KQ MG      K R D  +Y+L  P  P+V++ T      D+ P G NA VA
Sbjct: 690  NTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPHAPMVKSKTIELTNFDKLPAGQNATVA 749

Query: 716  VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DRGQKLFRRNKDAKS 774
            V++Y+GYD+EDA+ILNK+S+DRG     +Y+     +    N+  DR     +     K 
Sbjct: 750  VMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDRIMGPMKDALTNKV 809

Query: 775  L--HSVIDSDGLPYVGQ-------MIHPGEPYCSIYD-------KTTNSWRTNSRKGSES 818
            +  H V+D+DG+   G+       MI+   P  +  +       +   +    S KG E 
Sbjct: 810  IFKHDVLDTDGIVAPGEQVQNKQIMINKEMPAVTSMNPLQGQSAQVPYTAVPISYKGPEP 869

Query: 819  VFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGV 878
             +++ V V     ++   K  I  R TR P IGDKFSSRHGQKGV   +    DMPF+  
Sbjct: 870  SYIERVMVSANAEEDFLIK--ILLRQTRIPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDF 927

Query: 879  TGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDES 938
             G+ PD+I+NPH FPSRMT+   LE +  K G L GKF   T F  S             
Sbjct: 928  -GICPDMIMNPHGFPSRMTVGKTLELLGGKAGLLEGKFHYGTAFGGSK------------ 974

Query: 939  KSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRST 998
               V+++   L   GFNY G +  YSG+ G+ L   I+ GPVYYQ+L+HMV DK   R+ 
Sbjct: 975  ---VEDIQAELERHGFNYVGKDFFYSGITGSPLEAYIYSGPVYYQKLKHMVQDKMHARAR 1031

Query: 999  GTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGS 1058
            G    +TRQP +GR R GG+R GEMERD L+++GA+ L+ +RL   SD    DVC  CG 
Sbjct: 1032 GPKAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMISSDAFEVDVCRTCGR 1091

Query: 1059 VLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMN 1118
            +   ++                        CH CQ+S  +  ++MPY  + L  EL +MN
Sbjct: 1092 MAYCSW------------------------CHFCQSSANVSKISMPYACKLLFQELTSMN 1127

Query: 1119 I 1119
            +
Sbjct: 1128 V 1128


>gi|119719204|ref|YP_919699.1| DNA-directed RNA polymerase subunit B [Thermofilum pendens Hrk 5]
 gi|119524324|gb|ABL77696.1| DNA-directed RNA polymerase, subunit B' [Thermofilum pendens Hrk 5]
          Length = 1130

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 350/1203 (29%), Positives = 542/1203 (45%), Gaps = 194/1203 (16%)

Query: 15   LVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRE------- 67
            LVR H++SF+  L+ GL E+ D     K+   G    +++F  ++ G P  RE       
Sbjct: 28   LVRQHLDSFNAFLERGLQEIVDEVGGIKVESQG---VEIKFGKIEVGQPTFREADGSDLA 84

Query: 68   ---------------------------------RFNFGQFPVMLKTRRCHLQGADSQ-KL 93
                                                 G  P+M+K+++C L G  S+ ++
Sbjct: 85   LTPMIARLRNITYAAPLYLTMTLYVDGEERRTESVYIGSLPIMVKSKKCVLYGLKSEDEI 144

Query: 94   VSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVR 153
            V   E+  + GGYFI+NG ERV    I+ +++  ++ V   +       T  A V     
Sbjct: 145  VKYGEDPYDPGGYFIVNGSERV----IVMQEDLSVNRVLVDYGGASGSVTHTAKVFSVAA 200

Query: 154  KDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKY 213
              +S +T++     +G +   F     +  +PV ++++AL    D EI       Y    
Sbjct: 201  GQRSPLTVE--RTKDGMIYASFPACPSK--IPVVVLMRALGLKTDQEI------AY---- 246

Query: 214  KKEKGAVGS-PLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAE 272
                 A+G+ P++ +    +L E   ++ T   + L +IG    P   G         A+
Sbjct: 247  -----AIGNDPIIQQEFLPVLMEQSKIAATPE-EALDYIGSRVSP---GQPRNVRIERAQ 297

Query: 273  TVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
             V+ + +  H+         K   +  M+ +L  L       D+ D L N+ I   G LI
Sbjct: 298  AVLDENLLPHIGRGPAARISKAFFVGQMVSRLLELKLGMRGPDDKDHLANKRIRQAGELI 357

Query: 329  TIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKT 388
                +       R+  K +   IE +  K    NL +I               +   + T
Sbjct: 358  AQVFRSAF----RQLVKEMTYSIERHTSKTRDINLVSI---------------VRPDIIT 398

Query: 389  GRL--ATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT---SVRKLLP 443
             RL  A  TG  +  R G +   +R N+L  IS  R V    S    RT      R+L P
Sbjct: 399  ERLNHALATGNWVGGRTGVSQILDRTNYLSTISHLRRVVSPLS----RTQPHFEARELHP 454

Query: 444  ESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIG-VGMI 502
              WG LCPV +P+G+ CGL+ H+     +++  D +            +  +L+G +G++
Sbjct: 455  TQWGRLCPVESPEGQNCGLVKHLALLATLSNGTDEK-----------QVYDLLVGRLGVV 503

Query: 503  PSLPKLVKSGPPAVLSVLLDGRVVGVIPSSE-IEKVVAHLRRLKVSAASVIPDDLEVGYV 561
            P    + K+   A   V L+GR++G +   + + + +  LRR    +  V        Y 
Sbjct: 504  PVEKTVGKNISGA--RVYLNGRLIGYVEDGKGLAETLRKLRREGRISHEVNVAFYSHEYT 561

Query: 562  PLSLGGAYPGLYLFTSPPKFVRP--VRNISLPSEESQNIELIGPFEQVFME------IRC 613
               + G    +Y+     +  RP  V     P  + +++EL+   E  + +      +  
Sbjct: 562  VGGVKGRIEEVYVNCDAGRIRRPLIVVENGEPRLKHEHVELLRKGEWTWSDLIENGIVEY 621

Query: 614  PDGGDGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMA 663
             D  +    NA+ A          TH EI P  +L ++A   P+ ++NQSPRN YQ  MA
Sbjct: 622  LDAEE--EENAYIATDVSELTPQHTHLEIVPAAILGIIAMTIPFIEYNQSPRNSYQAAMA 679

Query: 664  KQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYD 723
            KQ++G      K R D +++ +  PQ P+V+T  +    +D  P GTN +VAVL   GY+
Sbjct: 680  KQSLGIPHYNFKLRMDPRMHVMYYPQKPLVKTRIFDLLPLDNLPYGTNMVVAVLTGGGYN 739

Query: 724  MEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVDRGQK--LFRRNKDAK--SLHSV 778
            ++DA+++NK++++RGM     ++T E  +    G   DR +K  L +   D K    +  
Sbjct: 740  IQDAVVINKAAIERGMSRSVFFRTYEAEERRYPGGLEDRFEKPSLEKDLLDVKPPQAYEA 799

Query: 779  IDS-DGLPYVGQMIHPGEPYCS------IYDKTTNSWRTNSRKGS-------ESVFVDYV 824
            ID  DG+ YV   ++ G+   S       Y  T        RK +       E   +D V
Sbjct: 800  IDPVDGIAYVEAELYGGQAVVSRTSPPRFYTSTLEPRVMTKRKDTSLLLRHGEKGIIDRV 859

Query: 825  AVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPD 884
             + M++   + + A +R R  R   +GDKF+SRHGQKGV   L P  DMPF+   G+ PD
Sbjct: 860  FI-MESPGGI-KLAKVRVRDLRPTELGDKFASRHGQKGVVGMLVPQEDMPFTE-EGITPD 916

Query: 885  LIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDE 944
            LIINPHA PSRMT+  LLE++  K  +L G+ +DAT F              E  SL DE
Sbjct: 917  LIINPHAIPSRMTVGQLLEAITGKAAALAGRRIDATAF--------------EPPSL-DE 961

Query: 945  LGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQI 1004
            + E+LR+ GF   G EVLY GV G +L  EIFIG VYY++L H+V+DK   R+ G +  +
Sbjct: 962  IREILRSYGFRSDGKEVLYDGVTGEKLEAEIFIGVVYYEKLHHLVADKMHARARGRVQIL 1021

Query: 1005 TRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATF 1064
            TRQP +GR R GG+RFGEME+D L+ HGA+ LL +RL   SD     VC  CG +     
Sbjct: 1022 TRQPTEGRAREGGLRFGEMEKDCLVGHGASMLLRERLLESSDKTTIWVCENCGYM----- 1076

Query: 1065 IHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQ 1124
                        G   AR    V C  C     +  V + Y F+ L  EL  + + + L 
Sbjct: 1077 ------------GWFDARKNTPV-CPVCGDKGRLSPVEVSYAFKLLLQELTGLGLSVRLI 1123

Query: 1125 LGD 1127
            L D
Sbjct: 1124 LKD 1126


>gi|194883820|ref|XP_001975995.1| GG20240 [Drosophila erecta]
 gi|190659182|gb|EDV56395.1| GG20240 [Drosophila erecta]
          Length = 1137

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 332/1140 (29%), Positives = 509/1140 (44%), Gaps = 179/1140 (15%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR    +Y+  +  D+E  Y      + R     G+ P+ML+   C L G    +L  L 
Sbjct: 110  CRLRDTTYSAPITVDIE--YTRGTQRIKRNNLLIGRMPLMLRCSNCALTGKSEFELSKLN 167

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC----VR 153
            E   + GGYF++ G E+V   +++ +Q     M+   F            V++C      
Sbjct: 168  ECPLDPGGYFVVRGQEKV---ILIQEQLSWNKMLTEDFNG----------VVQCQVTSST 214

Query: 154  KDQSSVTLKL-----YYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
             ++ S TL L     YYL + S+            +P+ ++ KAL   +D EI + +   
Sbjct: 215  HEKKSRTLVLSKHGKYYLKHNSMTDD---------IPIVVIFKALGVVSDQEIQSLIGI- 264

Query: 209  YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIG-----EHFQPVIDGLQ 263
             D K +   GA             L +  +L + T+ + L+++G     + FQ       
Sbjct: 265  -DSKSQNRFGAS------------LLDAYNLKVFTQQRALEYMGSKLVVKRFQSATTKTP 311

Query: 264  SESYYAVAETVIRDYIFVHLNDNNDKFNLLI------FMLQKLFSLVDHTSVSDNPDSLQ 317
            SE    +  T I  ++ V      D FNL +       M++++ +     ++ D+ D   
Sbjct: 312  SEEARELLLTTILAHVPV------DNFNLQMKAIYVSLMVRRVMAAELDKTLFDDRDYYG 365

Query: 318  NQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQ 377
            N+ + L G L+++      ED  ++    ++   + N  K        +K +     + Q
Sbjct: 366  NKRLELAGSLLSMMF----EDLFKRMNWELKTIADKNIPKVKAAQFDVVKHMR----AAQ 417

Query: 378  IGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS 437
            I   +E+ + +G    +      +RAG T    RL+++  +     V+  + F   R  S
Sbjct: 418  ITAGLESAISSGNWTIKRFK--MERAGVTQVLSRLSYISALGMMTRVN--SQFEKTRKVS 473

Query: 438  -VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R L P  WG LCP  TP+GE CGL+ ++     + +  + R            I+   
Sbjct: 474  GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVEERP---------VMIVAFN 524

Query: 497  IGVGMIPSLPKLVKSGP---PAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIP 553
             GV  I    + V   P   P V  V ++G V+G+  + +   +V +LR ++        
Sbjct: 525  AGVEDI----REVSGNPINNPNVFLVFINGNVLGLTLNHK--HLVRNLRYMRRKG----- 573

Query: 554  DDLEVG-YVPLSLGGAYPGLYLFTSPPKFVRP---VRNISLPSEESQNIEL---IGPFEQ 606
                +G YV +        +Y+ T   +  RP   V N     ++    EL   I  F+ 
Sbjct: 574  ---RMGSYVSVHTSYTQRCIYIHTDGGRLCRPYVIVENRRPLVKQHHLDELNRGIRKFDD 630

Query: 607  VFMEIRCPDGGDGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRN 656
              ++            ++F A          TH EI P  +L V A L PY  HNQSPRN
Sbjct: 631  FLLDGLIEYLDVNEENDSFIAWNEDQIEDRTTHLEIEPFTLLGVCAGLVPYPHHNQSPRN 690

Query: 657  MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
             YQC M KQ MG      K R D  +Y+L  P  P+V++ T      D+ P G NA VAV
Sbjct: 691  TYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPHAPMVKSKTIELTNFDKLPAGQNATVAV 750

Query: 717  LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DRGQKLFRRNKDAKSL 775
            ++Y+GYD+EDA+ILNK+S+DRG     +Y+     +    N+  DR     +     K +
Sbjct: 751  MSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDRIMGPMKDALTNKVI 810

Query: 776  --HSVIDSDGLPYVGQ-------MIHPGEPYCSIYD-------KTTNSWRTNSRKGSESV 819
              H V+D+DG+   G+       MI+   P  +  +       +   +    S KG E  
Sbjct: 811  FKHDVLDTDGIVAPGEQVQNKQIMINKEMPAVTSMNPLQGQSAQVPYTAVPISYKGPEPS 870

Query: 820  FVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVT 879
            +V+ V V     ++   K  I  R TR P IGDKFSSRHGQKGV   +    DMPF+   
Sbjct: 871  YVERVMVSANAEEDFLIK--ILLRQTRIPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDF- 927

Query: 880  GMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESK 939
            G+ PD+I+NPH FPSRMT+   LE +  K G L GKF   T F  S              
Sbjct: 928  GICPDMIMNPHGFPSRMTVGKTLELLGGKAGLLEGKFHYGTAFGGSK------------- 974

Query: 940  SLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTG 999
              V+++   L   GFNY G +  YSG+ G  L   I+ GPVYYQ+L+HMV DK   R+ G
Sbjct: 975  --VEDIQAELERHGFNYVGKDFFYSGITGAPLEAYIYSGPVYYQKLKHMVQDKMHARARG 1032

Query: 1000 TMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSV 1059
                +TRQP +GR R GG+R GEMERD L+++GA+ L+ +RL   SD    DVC  CG +
Sbjct: 1033 PKAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMISSDAFEVDVCRTCGRL 1092

Query: 1060 LTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
               ++                        CH CQ+S  +  ++MPY  + L  EL +MN+
Sbjct: 1093 AYCSW------------------------CHFCQSSANVSKISMPYACKLLFQELTSMNV 1128


>gi|348506052|ref|XP_003440574.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Oreochromis
            niloticus]
          Length = 1040

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 330/1153 (28%), Positives = 520/1153 (45%), Gaps = 180/1153 (15%)

Query: 32   SEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQ 91
            S  F  CR   ++Y+  +  D+E  Y      ++R     G+ P+ML++  C L G    
Sbjct: 4    SSSFFRCRLRDMTYSAPITVDIE--YTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPM 61

Query: 92   KLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC 151
            +   L E   + GGYFI+ G E+V   +++ +Q   +S  R      R+G    +V    
Sbjct: 62   EFSKLNECPLDPGGYFIVKGQEKV---ILIQEQ---LSKNRIIVEQDRKGAVGASVTSST 115

Query: 152  -VRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--------LPVGIVLKALVDTNDLEIF 202
              +K ++++ +K               QG+ YL         P+ I+ K +   +D EI 
Sbjct: 116  HEKKSRTNIIVK---------------QGRFYLRHNTLSEDAPIAIIFKGMGVESDQEIV 160

Query: 203  NHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ-PVIDG 261
              +          E+  + S   S      L E Q   + T+ Q L+++G   +   + G
Sbjct: 161  QMIG--------TEESVMASFAPS------LEECQKAQIFTQTQALRYLGNKVRRQRMWG 206

Query: 262  LQSESYYAVAETVIRDYIFVHLNDNNDKFN----LLIFMLQKLFSLVDHTSVSDNPDSLQ 317
               ++    A  ++   I  H+      F      L  M++++  L    +  D+ D   
Sbjct: 207  GPKKTKMEEARELLASLILTHVPVKEFNFRAKCIYLAVMVRRVI-LAQGDNKVDDRDYYG 265

Query: 318  NQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQ 377
            N+ + L G L+++  ++  + +  + KK I D+I    +   F    ++ K M ++   Q
Sbjct: 266  NKRLELAGQLLSLLFEDLFKKFNAELKK-IADQIIPKQRAAQF----DVVKHMRQD---Q 317

Query: 378  IGTSIETMLKTGRLATQT-GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
            I   +   + TG  + +   +D   R G T    RL+++  +     +   + F   R  
Sbjct: 318  ITNGMVNAISTGNWSLKRFKMD---RQGVTQVLSRLSYISALGMMTRI--SSQFEKTRKV 372

Query: 437  S-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV 495
            S  R L P  WG LCP  TP+GE CGL+ ++     + +  +    I+    +    + +
Sbjct: 373  SGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLAFNLGVEDVNL 432

Query: 496  LIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDD 555
            L G  +            P+V  V L+G ++GVI   + +K++   R ++   A  I + 
Sbjct: 433  LCGEEL----------SYPSVFLVFLNGNILGVI--RDHQKLINTFRLMR--RAGFINE- 477

Query: 556  LEVGYVPLSLGGAYPGLYLFTSPPKFVRP--VRNISLPSEESQNIELIG----PFEQVFM 609
                +V +S   +   +Y+ +   +  RP  +    +P  ++++IE +      FE  F+
Sbjct: 478  ----FVSISTNLSDRCVYISSDGGRLCRPYIIVKKGVPMVKNKHIEDLSQGYRTFED-FL 532

Query: 610  EIRCPDGGDGGRRNAFP-----------ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMY 658
                 +  D    N               TH EI P  +L V A L PY  HNQSPRN Y
Sbjct: 533  HEGLVEYLDVNEENDCQIALYEYMINKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTY 592

Query: 659  QCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLA 718
            QC M KQ MG      + R D  +Y L  PQ P+V+T T      ++ P G NA VAV++
Sbjct: 593  QCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQRPMVKTKTIELIDFEKLPAGQNATVAVMS 652

Query: 719  YTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR--GQKLFRRNKDAKSL 775
            Y+GYD+EDA++LNK+S+DRG     +Y+     L    N+  D+  G  L    +     
Sbjct: 653  YSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLRRYTNQTFDKVMGPMLDAATRKPIWR 712

Query: 776  HSVIDSDGLPYVGQMI-----------------------HPGEPYCSIYDKTTNSWRTNS 812
            HS++D+DG+   G+ +                        PG+P    Y     S+    
Sbjct: 713  HSILDADGICSPGERVENKQVLVNKSMPTVTQTPLEGSTQPGQPQ---YRDVPISY---- 765

Query: 813  RKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDID 872
             KGS   +++ V +          K  I  R TR P IGDKFSSRHGQKGVC  + P  D
Sbjct: 766  -KGSTDSYIEKVMISSNAEDAFLIK--ILLRQTRRPEIGDKFSSRHGQKGVCGLIVPQED 822

Query: 873  MPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGD 932
            MPF   TG+ PD+I+NPH +PSRMT+  L+E +A K G L G+F   T F  S       
Sbjct: 823  MPFCD-TGICPDIIMNPHGYPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSK------ 875

Query: 933  TGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDK 992
                     V ++ E L   G+NY G + + SG+ G  L   I+ GPVYYQ+L+HMV DK
Sbjct: 876  ---------VKDVCEDLIRYGYNYQGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDK 926

Query: 993  FQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADV 1052
               R+ G    +TRQP +GR R GG+R GEMERD L+ +GA+ LL +RL   SD    DV
Sbjct: 927  MHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDV 986

Query: 1053 CSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAA 1112
            C  CG +  + +                        CH C++S  + ++ +PY  + L  
Sbjct: 987  CGQCGLLGYSGW------------------------CHYCKSSCHVSSLRIPYACKLLFQ 1022

Query: 1113 ELAAMNIKITLQL 1125
            EL +MNI   L+L
Sbjct: 1023 ELQSMNIIPRLKL 1035


>gi|440297940|gb|ELP90581.1| DNA-directed RNA polymerase III subunit RPC2, putative [Entamoeba
            invadens IP1]
          Length = 1140

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 345/1198 (28%), Positives = 531/1198 (44%), Gaps = 201/1198 (16%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
            F   R LVR HI+SF+Y +DE + ++                                  
Sbjct: 48   FVKSRGLVRQHIDSFNYFIDEEIRQIVRANDKVTCDADSKFYLKYLDVWVHQPCVEENYK 107

Query: 37   -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
                    CR   +SYT  + A +EF        V R+    G  P+ML+++ C L    
Sbjct: 108  KEPITPMECRLRDLSYTAPIQASIEFT---RDKKVYRKTVTIGYMPIMLQSKHCVLYNNT 164

Query: 90   SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
              + +   E   + GGYF++ G+ER    VIL ++   MS  R       +G+   +V  
Sbjct: 165  FDQFMKHGECPMDPGGYFVVKGVER----VILSQEQ--MSKNRILIETSSQGFLSASVTS 218

Query: 150  RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
                    +V     YL  G + L      ++  +PV I++KA+   +D+E         
Sbjct: 219  ATHEVKSRTVV----YLKRGKLYLKHNSLTED--VPVMIIIKAMGMESDMEFLQF----- 267

Query: 210  DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDG----LQSE 265
                      VG+   S+ +  I  E +  ++  + + L+++G H + +  G    +   
Sbjct: 268  ----------VGNSYTSKMINSI-EECKTKNVLNQREALRYVGNHLK-IYTGQKGYISKR 315

Query: 266  SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLV---DHTSVSDNPDSLQNQEIL 322
                 A  V+ + I  H+      F   I  +  + S +   D T   D+ D   N+ + 
Sbjct: 316  PKVDEARDVLANLILPHIEVLRYNFKTKIIYIALMVSWILKADETGELDDKDYYGNKRME 375

Query: 323  LPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSI 382
            L G ++++  ++  + +  + + +   E+    +   F  L +I          +I T +
Sbjct: 376  LAGQMMSLLFEDLFKQFNTELQTIATKELSKKTRSESFDILKHIS-------PHRITTGL 428

Query: 383  ETMLKTGRLATQT-GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRK 440
               L TG    +   +D   RAG T    RL+++  +     ++  + F   R  S  R 
Sbjct: 429  IHALSTGNWVLKRFNMD---RAGVTQVLSRLSYISALGMMTRLN--SHFEKTRKVSGPRS 483

Query: 441  LLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVG 500
            L    WG +CP  TP+GE CGL+ + +    V +  D +           +I+ +L  +G
Sbjct: 484  LQGSQWGMVCPSDTPEGESCGLVKNFSLLTEVTTDSDDQ-----------AIMTMLFNLG 532

Query: 501  M-IPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVG 559
            +   +L    +        V L+G+++G+      +  +  LR+ +     V+     +G
Sbjct: 533  VEDANLISGDELNSENSYLVFLNGQLLGI-----HQNPIHFLRQCR-----VLRRHGRLG 582

Query: 560  -YVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFE-----QVFMEIR- 612
              V L L      + + +   +  RP+  I + + +S+    IGP E     + F  I  
Sbjct: 583  KKVSLHLNETQRSINISSDGGRVCRPL--IVVENAKSK----IGPKEIRDIVEGFKTIED 636

Query: 613  CPDGG------DGGRRNAFPATHE----------EIHPTGMLSVVANLTPYSDHNQSPRN 656
            C   G           N++ A +E          EI P  +L VVA L PY  HNQSPRN
Sbjct: 637  CIKDGMIEYLDVNEENNSYIAIYENQINEHTTHLEIDPLSILGVVAGLIPYPHHNQSPRN 696

Query: 657  MYQCQMAKQTMGFSVQALKF-RADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
             YQC M KQ +G ++   +F R D  LY L  PQ P+VRT T      D+ P G NA+VA
Sbjct: 697  TYQCAMGKQAIG-TIGYNQFKRIDTLLYLLYYPQVPMVRTKTIDMINFDKVPAGENAMVA 755

Query: 716  VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSL 775
            V++Y+GYD+EDA ILNK+S+DRG     +Y+   + +    N +          + A   
Sbjct: 756  VMSYSGYDIEDASILNKASIDRGYQRCFVYRKADVVIKKYRNGMSDRVVCPTDEERAMKK 815

Query: 776  HSVIDSDGLPYVGQMIHPGEPYCSIY--DKTTNSWRTN------------SRKGSESVFV 821
            + V+D DG+   G  + PG  Y +    + TT    T+            + KGS   +V
Sbjct: 816  YKVLDFDGVCSPGTKLMPGMIYLNKQAPNNTTRPITTDVPTDEDFRREALTYKGSVPSYV 875

Query: 822  DYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGM 881
            D V +   +S   P K  I  R +R P +GDKFSSRHGQKGV   +    DMPF+G  G+
Sbjct: 876  DKVLI--TSSDEEPLKIKIGLRTSRRPELGDKFSSRHGQKGVTGLIVKQEDMPFTG-DGI 932

Query: 882  RPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSL 941
             PD+I+NPH FPSRMT+  +LE V+ K G + G F   T F        GD   D SK L
Sbjct: 933  CPDVIMNPHGFPSRMTVGKMLELVSGKAGLMDGTFKYGTAFG-------GDKLDDMSKIL 985

Query: 942  VDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTM 1001
            ++         G++Y G EVLYSG+ G  L   IFIGPVYYQ+L+HMV DK   R+ G  
Sbjct: 986  IES--------GYSYDGKEVLYSGITGKTLRAYIFIGPVYYQKLKHMVLDKMHARARGPK 1037

Query: 1002 DQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLT 1061
              +TRQP +GR R GG+R GEMERD L+ +GA+ LL +RL   SD     VC  CG +  
Sbjct: 1038 SSLTRQPTEGRSRDGGLRLGEMERDCLIGYGASNLLLERLMYSSDAFKVTVCRKCGLMGY 1097

Query: 1062 ATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
              +                        C  CQ+S    T+ MPY  + L  E+ +MN+
Sbjct: 1098 CGY------------------------CKYCQSSLNCSTITMPYACKLLFQEMQSMNV 1131


>gi|195431078|ref|XP_002063575.1| GK21338 [Drosophila willistoni]
 gi|194159660|gb|EDW74561.1| GK21338 [Drosophila willistoni]
          Length = 999

 Score =  397 bits (1021), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 330/1120 (29%), Positives = 500/1120 (44%), Gaps = 187/1120 (16%)

Query: 71   FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSM 130
             G+ P+ML++  C L G    +L  L E   + GGYF++ G E+V   +++ +Q     M
Sbjct: 3    IGRMPLMLRSSNCVLSGKTEFELSKLNECPLDPGGYFVVRGQEKV---ILIQEQLSWNKM 59

Query: 131  VRSSFRDRREGYTDKAVVIRC----VRKDQSSVTLKL-----YYLLNGSVRLGFWLQGKE 181
            +   F            V++C       ++ S TL L     YYL + S+          
Sbjct: 60   LTEDFNG----------VVQCQVTSSTHEKKSRTLVLSKHGRYYLKHNSMTDD------- 102

Query: 182  YLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSL 241
              +P+ ++ KAL   +D EI +H+                 P    R    L E  +L +
Sbjct: 103  --IPIVVIFKALGIVSDQEIMSHIGV--------------DPQSQNRFGASLLEAFNLKI 146

Query: 242  TTRLQCLQHIGEHFQPVIDGLQSESYYAVAET---VIRDYIFVHLNDNNDKFNL----LI 294
             T+ + L ++G     V+   QS +     E    ++   I  H+  +N  F +    + 
Sbjct: 147  FTQQRALDYMGSKL--VVKRFQSATTKTPPEEARDLLMTTILAHVPVDNFNFQMKAIYVA 204

Query: 295  FMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENN 354
             M++++ +     ++ D+ D   N+ + L G LI++   E L   +    K+I D+    
Sbjct: 205  LMVRRVMAAELDKTLFDDRDYYGNKRLELAGSLISLMF-EDLFKRMNWELKMIADKNIPK 263

Query: 355  GKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNF 414
             K   F        V++   + QI   +E+ + +G    +      +R G T    RL++
Sbjct: 264  VKAAQF-------DVVKHMRAAQITAGLESAISSGNWTIKRFK--MERGGVTQVLSRLSY 314

Query: 415  LRFISFFRAVHRGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVA 473
            +  +     V+  + F   R  S  R L P  WG LCP  TP+GE CGL+ ++     + 
Sbjct: 315  ISALGMMTRVN--SQFEKSRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHIT 372

Query: 474  SYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGP---PAVLSVLLDGRVVGV-I 529
            +  D              IL    GV  I    + V   P   P V  V ++G V+G+ +
Sbjct: 373  TEVDEHP---------VMILAYNAGVEDI----REVSGNPINNPHVFLVFINGNVLGLTL 419

Query: 530  PSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP--VRN 587
                + K + ++RR K    S         +V +    +   +++ T   +  RP  +  
Sbjct: 420  NHKHLVKNMRYMRR-KGRIGS---------FVSIHTSYSQRCVFVHTDGGRLCRPYIIVE 469

Query: 588  ISLPSEESQNIEL----IGPFEQVFME--IRCPDGGDGG-------RRNAFPAT-HEEIH 633
               P  +  +++     I  F+   ++  I   D  +           N  P T H EI 
Sbjct: 470  KCRPLVKQHHLDELQRGIRKFDDFLLDGLIEYLDVNEENDSFIACYEENINPTTTHLEIE 529

Query: 634  PTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIV 693
            P  +L V A L PY  HNQSPRN YQC M KQ MG      K R D  +Y+L  PQ P+V
Sbjct: 530  PFTLLGVCAGLVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPQAPMV 589

Query: 694  RTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLS 753
            ++ T      D+ P G NA VAV++Y+GYD+EDA+ILNK+S+DRG     +Y+     + 
Sbjct: 590  KSKTIELTNFDKVPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVK 649

Query: 754  DDGNKV-DRGQKLFRRNKDAKSL--HSVIDSDGLPYVGQMIH------------------ 792
               N+  DR     +     K +  H V+D+DG+   G+ +                   
Sbjct: 650  RYANQTFDRIMGPVKDALTNKVIFKHDVLDTDGIVSPGEQVQNKQIMINKEMPAVTSINP 709

Query: 793  -----PGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRN 847
                 P  PY ++           S KGSE  +V+ V V     ++   K  I  R TR 
Sbjct: 710  LEGQSPQVPYTAV---------PISYKGSEPSYVERVMVSANAEEDFLIK--ILLRQTRI 758

Query: 848  PIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAA 907
            P IGDKFSSRHGQKGV   +    DMPF+   G+ PD+I+NPH FPSRMT+   LE +  
Sbjct: 759  PEIGDKFSSRHGQKGVTGLIVDQEDMPFNDF-GICPDMIMNPHGFPSRMTVGKTLELLGG 817

Query: 908  KGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVY 967
            K G L GKF   T F  S               + D   E++R  GFNY G +  YSG+ 
Sbjct: 818  KAGVLEGKFHYGTAFGGS--------------KVQDIQAELVRH-GFNYMGKDFFYSGIT 862

Query: 968  GTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDS 1027
            G  L   I+ GPVYYQ+L+HMV DK   R+ G    +TRQP +GR R GG+R GEMERD 
Sbjct: 863  GAPLEAYIYSGPVYYQKLKHMVQDKMHARARGPKAVLTRQPTQGRSREGGLRLGEMERDC 922

Query: 1028 LLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKV 1087
            L+++GA+ L+ +RL   SD    DVC +CG +   ++                       
Sbjct: 923  LISYGASMLIMERLMISSDAFEVDVCRICGRLAYCSW----------------------- 959

Query: 1088 TCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
             CH CQ+S  +  ++MPY  + L  EL +MN+   L L D
Sbjct: 960  -CHFCQSSAHVSKISMPYACKLLFQELTSMNVVPKLILED 998


>gi|290990263|ref|XP_002677756.1| predicted protein [Naegleria gruberi]
 gi|284091365|gb|EFC45012.1| predicted protein [Naegleria gruberi]
          Length = 1120

 Score =  397 bits (1021), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 326/1144 (28%), Positives = 521/1144 (45%), Gaps = 152/1144 (13%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVR-ERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
            CR   ++Y+  ++  VE+  +     +++ E  + G+ P+ML+  RC L G D ++L  L
Sbjct: 68   CRLRDLTYSADIIVSVEYPQIVGNETLIKHEDLSIGRMPIMLQCDRCVLCGKDDKELAKL 127

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
             E   + GGYFI+ G+E+V     L ++    + V     D+ +  T         RK +
Sbjct: 128  GECPLDPGGYFIVKGVEKV----CLIQEQLSKNRVIIDL-DKEKQITASVTGSTHYRKSK 182

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYL--LPVGIVLKALVDTNDLEIFNHLTCCYDEKYK 214
            +++ +K            F+L    +   +P+ ++ KA+   +D EI   +    D KY 
Sbjct: 183  TNIIIK---------HERFYLDHNSFTKDIPIIMLFKAMGIESDQEIVQLIGS--DRKYI 231

Query: 215  KEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETV 274
               G      + E V      ++ +S   +L   +          +  + E    +   +
Sbjct: 232  DALGPSFEECIREGVYTSEQAIEYMSRYLKLADFRK---------NKPKMEETREILSNI 282

Query: 275  IRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKE 334
            I  +I V+  +   K   L  M++++   +  ++  D+ D   N+ + + G L+++  ++
Sbjct: 283  ILCHIPVYKFNYKMKIVYLAIMVKRMIDALHDSANIDDKDYYGNKRLEMAGQLLSLLFED 342

Query: 335  KLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQ 394
              + +  + KK ++ +     ++       +I  +   N SK I   ++  + +G    Q
Sbjct: 343  LFKKFNDEIKKTLEKKTGRRSRRATSTPTEDISSIFNANSSK-ITEGLKNSISSGNWNVQ 401

Query: 395  TGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPESWGFLCPVH 453
                  +RAG T    RL+F+  +     +   + F   R  S  R L P  WG LCP  
Sbjct: 402  RFK--MERAGVTHVLSRLSFIAALGMMTRI--SSQFEKTRKVSGPRALQPSQWGLLCPSD 457

Query: 454  TPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGP 513
            TP+GE CGL+ ++     V +  +    IR         L   IGV  I +L    +   
Sbjct: 458  TPEGEGCGLVKNLALLTHVTTDDEEEPIIR---------LAYNIGVEDI-NLISGEELNH 507

Query: 514  PAVLSVLLDGRVVGV--IPSSEIEKVVAHLRRL-KVSA-ASVIPDDLEVGYVPLSLGGAY 569
            P+   V L+G ++G+   PS +  K+   +RR  K+    S+  +DL            +
Sbjct: 508  PSSYVVFLNGLILGIHRFPS-QFTKLFRMMRRAGKIHEFVSIFKNDL------------H 554

Query: 570  PGLYLFTSPPKFVRP---VRNISLPSEESQNIEL---IGPFEQVFME--IRCPDGGDGGR 621
              +Y+ +   +  RP   V N  L   +    EL   I  ++    E  I   D  +   
Sbjct: 555  KAIYIASDGGRVCRPLIIVENQKLKVTQKHLSELAEGIRTWDDFLKEGLIEYLDVNEENN 614

Query: 622  RN--------AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQA 673
             N            TH EI P  +L V A L PY  HNQSPRN YQC M KQ MG     
Sbjct: 615  SNIVFREEDIKLETTHFEIEPFTILGVCAGLVPYPHHNQSPRNTYQCAMGKQAMGAIAYN 674

Query: 674  LKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKS 733
               R D  L  +  PQ P+V+T T      ++   G NA +AV++Y+GYD+EDA+++NK+
Sbjct: 675  QFNRLDTLLLLMVYPQKPMVKTKTIELIQFEKLSGGQNASIAVMSYSGYDIEDAVVVNKA 734

Query: 734  SVDRGMCHGQIYQTETIDLSDDGNKVD-------RGQKLFRRNKDAKSLHSV--IDSDGL 784
            S+DRG       +    +L    N V+         Q+   ++ D K L S   +D DG+
Sbjct: 735  SIDRGYGRCIYLKKYVTELKRYHNGVEDVLQPPPNAQQA--KDMDQKRLKSYQRLDFDGM 792

Query: 785  PYVGQMIHPGEPYCSIY----------------DKTTNSWRTNSRK-------GSESVFV 821
              VG+ I+P + Y + +                  ++N    N+ K       G  SV+V
Sbjct: 793  CAVGERIYPNDMYINRFVAQNTQDNLLGMNTPTPSSSNGAAANTYKPSPIFYKGPCSVYV 852

Query: 822  DYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGM 881
            D V +   N            R TR P +GDKFSSRHGQKGVC  +    DMPF+   G+
Sbjct: 853  DQVLI-TPNYDRGGYALKYLLRQTRRPELGDKFSSRHGQKGVCGLIVDQQDMPFNE-QGI 910

Query: 882  RPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSL 941
             PD+I+NPH FPSRMT+  ++E +  K G L+GK    T F        GD         
Sbjct: 911  CPDMIMNPHGFPSRMTVGKMIELICGKSGVLNGKQGYGTAFG-------GDK-------- 955

Query: 942  VDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTM 1001
            V+++G+ L   GF+Y G ++L SG+ G  ++C I+ GPV+YQRL+HMV DK   RS G +
Sbjct: 956  VEDIGKGLIRHGFSYSGKDLLTSGITGETMSCYIYFGPVFYQRLKHMVLDKMHARSKGPV 1015

Query: 1002 DQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLT 1061
              +TRQP++GR + GG+R GEMERD L+ +GA+ LL +RL   SD +   VC  CG +  
Sbjct: 1016 RILTRQPLEGRSKEGGLRLGEMERDCLIGYGASALLLERLMLSSDEYKVHVCEDCGMIGY 1075

Query: 1062 ATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKI 1121
              +                        C+ C++ + +  + MPY F+ L  EL AMNI  
Sbjct: 1076 MGY------------------------CNFCKSKQNISLLPMPYAFKLLIQELQAMNISP 1111

Query: 1122 TLQL 1125
             L+L
Sbjct: 1112 KLKL 1115


>gi|407043800|gb|EKE42160.1| DNA-directed RNA polymerase, beta subunit domain containing protein
            [Entamoeba nuttalli P19]
          Length = 1141

 Score =  397 bits (1021), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 341/1186 (28%), Positives = 525/1186 (44%), Gaps = 177/1186 (14%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMF--------------------------------- 35
            F   R LVR HI+SF+Y +DE + ++                                  
Sbjct: 49   FVKARGLVRQHIDSFNYFIDEEIKQIVKANDKITCDADPRFYLKYLDVKVDTPCVEVDYK 108

Query: 36   ------DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
                    CR   ISYT  ++A++++      + + R+    G  P+ML+++ C L    
Sbjct: 109  KESITPQECRLRDISYTAPILANIQYT---RDNKIFRKTVTIGYMPIMLQSKHCVLYNNT 165

Query: 90   SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
             ++ +   E   + GGYFI+ G+ERV    IL ++   MS  R       +G+   +V  
Sbjct: 166  FEEFIRHGECPMDPGGYFIVKGVERV----ILSQEQ--MSKNRILIETTTQGFLSASVTS 219

Query: 150  RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
                    +V     YL  G + L      ++  LP+ IV+KA+   +D+E         
Sbjct: 220  ATHEVKSRTVV----YLKKGKLYLKHNSLTED--LPIMIVIKAMGMESDMEFLQF----- 268

Query: 210  DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDG----LQSE 265
                      VG+   S+ +  I  E +   +  + + L++IG H + +  G    +   
Sbjct: 269  ----------VGNHYTSKMINSI-EECKAKDVLNQREALRYIGNHLK-IYTGQKGYISKR 316

Query: 266  SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLV---DHTSVSDNPDSLQNQEIL 322
                 A  V+ + +  H+  N   F   I  +  + + +   D T   D+ D   N+ + 
Sbjct: 317  PKIEEARDVLANLVLPHIEVNRYNFKTKIIYIALMVNWILKADETGELDDKDYYGNKRME 376

Query: 323  LPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSI 382
            L G L+++      ED  ++    +Q+       K       +I K +  +P +     I
Sbjct: 377  LAGQLMSLLF----EDLFKQFNTDLQNAANKGLTKKSRSETFDIIKCI--SPHRITQGLI 430

Query: 383  ETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKL 441
             ++     +  +  +D   RAG T    RL+++  +     ++  + F   R  S  R L
Sbjct: 431  HSLSTGNWVLKRFNMD---RAGITQVLSRLSYISALGMMTRLN--SHFEKTRKVSGPRSL 485

Query: 442  LPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGM 501
                WG +CP  TP+GE CGL+ + +    V +  DS            +I+ +L  +G+
Sbjct: 486  QGSQWGMVCPSDTPEGESCGLVKNFSLLTEVTT--DSNDQ---------AIVTMLFNLGV 534

Query: 502  -IPSLPKLVKSGPPAVLSVLLDGRVVGVIPSS-EIEKVVAHLRRLKVSAASVIPDDLEVG 559
               +L    +   P+   V L+G+++G+  +     K    LRR       V    L + 
Sbjct: 535  EDANLISGDEVNAPSSYLVFLNGQLLGIHQNPIHFLKQCRLLRRHGRLGKKV---SLHLN 591

Query: 560  YVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDG 619
             +  S+  +  G  +   P   V   ++   P E    +E     E    E         
Sbjct: 592  EMQRSINISSDGGRV-CRPLIVVENCKSKIGPKEIRDIVEGFKSIEDCLKEGLIEYLDVN 650

Query: 620  GRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGF 669
               N++ A          TH EI P  +L VVA L PY  HNQSPRN YQC M KQ +G 
Sbjct: 651  EENNSYIAINENEINEHTTHLEIDPLSILGVVAGLIPYPHHNQSPRNTYQCAMGKQAIG- 709

Query: 670  SVQALKF-RADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAM 728
            ++   +F R D  LY L  PQ P+V+T T      D+ P G NA+VAV++Y+GYD+EDA 
Sbjct: 710  TIGYNQFKRVDTLLYLLYYPQIPMVKTKTIDMINFDKLPAGQNAMVAVMSYSGYDIEDAS 769

Query: 729  ILNKSSVDRGMCHGQIY-QTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYV 787
            ILNK+S+DRG     +Y + E +         DR        ++     S +D DG+   
Sbjct: 770  ILNKASIDRGYGRCFVYRKAECVIKKYKNGACDRVVCPTDEERELPKYKS-LDFDGVCSP 828

Query: 788  GQMIHPGE-------PYCSIYDKTTNSWRTN-------SRKGSESVFVDYVAVDMKNSKN 833
            G +++PG        P  +I   TT++ + +       + KG    +VD V +   +++ 
Sbjct: 829  GSILNPGSIYLNKQVPLNTIGTLTTDTIKDDEYRREVLTYKGPVPSYVDQVLI--TSNEE 886

Query: 834  LPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFP 893
             P K  I  R +R P +GDKFSSRHGQKGV   +    DMPF+  TG+ PD+I+NPH FP
Sbjct: 887  EPLKVKISLRTSRRPELGDKFSSRHGQKGVTGLIVNQEDMPFTN-TGICPDVIMNPHGFP 945

Query: 894  SRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCG 953
            SRMT+  LLE V+ K G + G F   T F        GD   D SK L++         G
Sbjct: 946  SRMTVGKLLELVSGKAGLMDGSFKYGTAFG-------GDKLDDMSKILIE--------AG 990

Query: 954  FNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRK 1013
            ++Y G E LYSG+ G  L   IFIGPVYYQ+L+HMV DK   R+ G    +TRQP +GR 
Sbjct: 991  YSYDGKEELYSGITGKALHAYIFIGPVYYQKLKHMVLDKMHARARGPKSSLTRQPTEGRS 1050

Query: 1014 RGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIR 1073
            R GG+R GEMERD L+ +GA  LL +RL   SD     VC  CG +  + +         
Sbjct: 1051 RDGGLRLGEMERDCLIGYGATNLLLERLMYSSDAFKVCVCKKCGLIGHSGY--------- 1101

Query: 1074 EIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
                           C  C++S     V MPY  + L  E+ +MN+
Sbjct: 1102 ---------------CKFCESSLYCTNVTMPYACKLLFQEMQSMNV 1132


>gi|449708606|gb|EMD48033.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
            putative [Entamoeba histolytica KU27]
          Length = 1141

 Score =  397 bits (1020), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 341/1186 (28%), Positives = 525/1186 (44%), Gaps = 177/1186 (14%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMF--------------------------------- 35
            F   R LVR HI+SF+Y +DE + ++                                  
Sbjct: 49   FVKARGLVRQHIDSFNYFIDEEIKQIVKANDKITCDADPRFYLKYLDVKVDTPCVEVDYK 108

Query: 36   ------DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
                    CR   ISYT  ++A++++      + + R+    G  P+ML+++ C L    
Sbjct: 109  KESITPQECRLRDISYTAPILANIQYT---RDNKIFRKTVTIGYMPIMLQSKHCVLYNNT 165

Query: 90   SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
             ++ +   E   + GGYFI+ G+ERV    IL ++   MS  R       +G+   +V  
Sbjct: 166  FEEFIRHGECPMDPGGYFIVKGVERV----ILSQEQ--MSKNRILIETTTQGFLSASVTS 219

Query: 150  RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
                    +V     YL  G + L      ++  LP+ IV+KA+   +D+E         
Sbjct: 220  ATHEVKSRTVV----YLKKGKLYLKHNSLTED--LPIMIVIKAMGMESDMEFLQF----- 268

Query: 210  DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDG----LQSE 265
                      VG+   S+ +  I  E +   +  + + L++IG H + +  G    +   
Sbjct: 269  ----------VGNHYTSKMINSI-EECKAKDVLNQREALRYIGNHLK-IYTGQKGYISKR 316

Query: 266  SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLV---DHTSVSDNPDSLQNQEIL 322
                 A  V+ + +  H+  N   F   I  +  + + +   D T   D+ D   N+ + 
Sbjct: 317  PKIEEARDVLANLVLPHIEVNRYNFKTKIIYIALMVNWILKADETGELDDKDYYGNKRME 376

Query: 323  LPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSI 382
            L G L+++      ED  ++    +Q+       K       +I K +  +P +     I
Sbjct: 377  LAGQLMSLLF----EDLFKQFNTDLQNAANKGLTKKSRSETFDIIKCI--SPHRITQGLI 430

Query: 383  ETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKL 441
             ++     +  +  +D   RAG T    RL+++  +     ++  + F   R  S  R L
Sbjct: 431  HSLSTGNWVLKRFNMD---RAGITQVLSRLSYISALGMMTRLN--SHFEKTRKVSGPRSL 485

Query: 442  LPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGM 501
                WG +CP  TP+GE CGL+ + +    V +  DS            +I+ +L  +G+
Sbjct: 486  QGSQWGMVCPSDTPEGESCGLVKNFSLLTEVTT--DSNDE---------AIVTMLFNLGV 534

Query: 502  -IPSLPKLVKSGPPAVLSVLLDGRVVGVIPSS-EIEKVVAHLRRLKVSAASVIPDDLEVG 559
               +L    +   P+   V L+G+++G+  +     K    LRR       V    L + 
Sbjct: 535  EDANLISGDEVNAPSSYLVFLNGQLLGIHQNPIHFLKQCRLLRRHGRLGKKV---SLHLN 591

Query: 560  YVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDG 619
             +  S+  +  G  +   P   V   ++   P E    +E     E    E         
Sbjct: 592  EMQRSINISSDGGRV-CRPLIVVENCKSKIGPKEIRDIVEGFKSIEDCLKEGLIEYLDVN 650

Query: 620  GRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGF 669
               N++ A          TH EI P  +L VVA L PY  HNQSPRN YQC M KQ +G 
Sbjct: 651  EENNSYIAINENEINEHTTHLEIDPLSILGVVAGLIPYPHHNQSPRNTYQCAMGKQAIG- 709

Query: 670  SVQALKF-RADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAM 728
            ++   +F R D  LY L  PQ P+V+T T      D+ P G NA+VAV++Y+GYD+EDA 
Sbjct: 710  TIGYNQFKRVDTLLYLLYYPQIPMVKTKTIDMINFDKLPAGQNAMVAVMSYSGYDIEDAS 769

Query: 729  ILNKSSVDRGMCHGQIY-QTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYV 787
            ILNK+S+DRG     +Y + E +         DR        ++     S +D DG+   
Sbjct: 770  ILNKASIDRGYGRCFVYRKAECVIKKYKNGACDRVVCPTDEERELPKYKS-LDFDGVCSP 828

Query: 788  GQMIHPGE-------PYCSIYDKTTNSWRTN-------SRKGSESVFVDYVAVDMKNSKN 833
            G +++PG        P  +I   TT++ + +       + KG    +VD V +   +++ 
Sbjct: 829  GSILNPGSIYLNKQVPLNTIGTLTTDTIKDDEYRREVLTYKGPVPSYVDQVLI--TSNEE 886

Query: 834  LPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFP 893
             P K  I  R +R P +GDKFSSRHGQKGV   +    DMPF+  TG+ PD+I+NPH FP
Sbjct: 887  EPLKVKISLRTSRRPELGDKFSSRHGQKGVTGLIVNQEDMPFTN-TGICPDVIMNPHGFP 945

Query: 894  SRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCG 953
            SRMT+  LLE V+ K G + G F   T F        GD   D SK L++         G
Sbjct: 946  SRMTVGKLLELVSGKAGLMDGSFKYGTAFG-------GDKLDDISKILIE--------AG 990

Query: 954  FNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRK 1013
            ++Y G E LYSG+ G  L   IFIGPVYYQ+L+HMV DK   R+ G    +TRQP +GR 
Sbjct: 991  YSYDGKEELYSGITGKALHAYIFIGPVYYQKLKHMVLDKMHARARGPKSSLTRQPTEGRS 1050

Query: 1014 RGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIR 1073
            R GG+R GEMERD L+ +GA  LL +RL   SD     VC  CG +  + +         
Sbjct: 1051 RDGGLRLGEMERDCLIGYGATNLLLERLMYSSDAFKVCVCKKCGLIGHSGY--------- 1101

Query: 1074 EIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
                           C  C++S     V MPY  + L  E+ +MN+
Sbjct: 1102 ---------------CKFCESSLYCTNVTMPYACKLLFQEMQSMNV 1132


>gi|332017159|gb|EGI57958.1| DNA-directed RNA polymerase III subunit RPC2 [Acromyrmex echinatior]
          Length = 1113

 Score =  397 bits (1020), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 327/1139 (28%), Positives = 508/1139 (44%), Gaps = 157/1139 (13%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR   ++Y+  ++ DVE  Y+ +   ++R     G+ P+ML++  C L      +L  + 
Sbjct: 80   CRLRDLNYSASIIVDVE--YIRSNQRIIRHNMVIGKMPIMLRSSNCVLTKKSESELAKMN 137

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCV----- 152
            E   + GGYFI+NG E+V   +++ +Q     MVR+  R   E  +   +V  C      
Sbjct: 138  ECLYDSGGYFIINGQEKV---ILIQEQ-----MVRN--RIILEEDSKNCIVAACNSFTHD 187

Query: 153  RKDQSSVTLKL--YYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYD 210
            +K +++V  K   YY+ +   +             + I+ KA+   +DLEI   +     
Sbjct: 188  KKTKTNVVGKTGKYYIRHNMFQDDIL---------ITIIFKAMGIVSDLEIMQMVGT--Q 236

Query: 211  EKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGE-----HFQPVIDGLQSE 265
            E Y  +  A             L + Q+L + ++ Q L+++        F      +  E
Sbjct: 237  ETYLNKFAAS------------LEDCQELGIFSQNQALKYLNNKRKQMRFHVPKSHVTDE 284

Query: 266  SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPG 325
                +A  ++     V  N       L + + + + +  DH S+ D+ D   N+ + L G
Sbjct: 285  MKDVLATNILSHVPVVDFNFRPKALYLALMIRRVINAQSDH-SLIDDKDYYGNKRLELAG 343

Query: 326  HLITIYLKEKLEDWLRKGKKLIQDEI-ENNGKKFDFFNLANIKKVMEKNPSKQIGTSIET 384
             L+ +  ++  + +  + KK+    I +     FD  N  +++  +  N      +S   
Sbjct: 344  SLLALMFEDLFKRFNWELKKIANKNIPKTKAAAFDIVN--HMRHDLITNGLVFAISSGNW 401

Query: 385  MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLP 443
             +K  R+         +R G T    RL+++  +     VH  + F   R  S  R L  
Sbjct: 402  TIKRFRM---------ERHGVTQVLSRLSYISALGMMTRVH--SQFEKTRKVSGPRSLQG 450

Query: 444  ESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP 503
              WG LCP  TP+GE CGL+ ++     + +       I+    +    +  L G  +  
Sbjct: 451  SQWGMLCPNDTPEGEACGLVKNLALMAHITTEVPEELIIKLVLNLGVENIYTLAGEELTS 510

Query: 504  SLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK----VSAASVIPDDLEVG 559
                        + SV ++G +VG++ + +  ++V   R L+    +++   I       
Sbjct: 511  E----------DIYSVFVNGIMVGIVQNHK--RLVRQFRLLRRRGYINSFVSIYTQHRHK 558

Query: 560  YVPLSLGGAY--PGLYLFTSPPKFVRPV------RNISLPSEESQN--IELIGPFEQVFM 609
             + +S  G      L +  +    V+P       RNI+   +   +  IE +   E+   
Sbjct: 559  CIQISSDGGRLCRPLIIVKNAKSLVKPKHIENLERNITSFEDFLYDGLIEYLDVNEENDS 618

Query: 610  EIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGF 669
             I C +            TH EI    +L V A L PY  HNQSPRN YQC M KQ MG 
Sbjct: 619  LIACTESEINEN-----TTHLEIAEFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGI 673

Query: 670  SVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMI 729
                 + R D  +Y+L  PQTPIV+T        D+ P G NAIVAV++Y+GYD+EDA+I
Sbjct: 674  IGYNQRNRIDTVMYNLVYPQTPIVKTRAIELINYDKLPAGENAIVAVMSYSGYDIEDALI 733

Query: 730  LNKSSVDRGMCHGQIYQTETIDLSDDGNKVD---RGQKLFRRNKDAKSLHSVIDSDGLPY 786
             NK+S+DRG     +Y+     L    N+      G  L    K   + H V+D DG+  
Sbjct: 734  FNKASIDRGYGRCLVYRNAKCILKKYANRTQDTIMGPMLDGNTKKPITKHEVLDVDGIVL 793

Query: 787  VGQMIH------------PGEPYCSIYDKTTNSWRTNSR------KGSESVFVDYVAVDM 828
             G+M+             P E    +   T  +     R      KG    +V+ V V  
Sbjct: 794  PGEMVENKTVMVNKSVPTPSENIGPVSSGTIQTQAVEYRNAEIPFKGMVPAYVEKVIVTS 853

Query: 829  KNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIIN 888
                    K  +  R TR P IGDKFSSRHGQKGV   +    DMPF+   G+ PD+I+N
Sbjct: 854  NADDCFLTK--LLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFND-HGICPDIIMN 910

Query: 889  PHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEM 948
            PH FPSRMT+  L+E +A K G ++GKF DAT F  +                V+++ E 
Sbjct: 911  PHGFPSRMTVGKLIELLAGKAGVVNGKFHDATAFGGAK---------------VEDIREE 955

Query: 949  LRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQP 1008
            L   G+NY G +  Y+G+ G  L   I+ GPVYYQ+L+HMV DK   R+ G    +TRQP
Sbjct: 956  LAKNGYNYLGKDFFYNGMTGKPLIGYIYSGPVYYQKLKHMVQDKMHARARGPRVVLTRQP 1015

Query: 1009 IKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQ 1068
             +GR R GG+R GEMERD L+ +GA+ LL +RL   SD    DVC+ CG +    +    
Sbjct: 1016 TEGRSREGGLRLGEMERDCLIGYGASMLLVERLMISSDAFKVDVCNKCGLIGYNGW---- 1071

Query: 1069 KRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
                                C  C++S  + T+ MPY  + L  EL +MN+   L L D
Sbjct: 1072 --------------------CQRCKSSSSVSTITMPYACKLLFQELQSMNVVPRLSLKD 1110


>gi|183232813|ref|XP_654890.2| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide
            [Entamoeba histolytica HM-1:IMSS]
 gi|169801863|gb|EAL49502.2| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
            putative [Entamoeba histolytica HM-1:IMSS]
          Length = 1122

 Score =  397 bits (1020), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 341/1186 (28%), Positives = 525/1186 (44%), Gaps = 177/1186 (14%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMF--------------------------------- 35
            F   R LVR HI+SF+Y +DE + ++                                  
Sbjct: 30   FVKARGLVRQHIDSFNYFIDEEIKQIVKANDKITCDADPRFYLKYLDVKVDTPCVEVDYK 89

Query: 36   ------DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
                    CR   ISYT  ++A++++      + + R+    G  P+ML+++ C L    
Sbjct: 90   KESITPQECRLRDISYTAPILANIQYT---RDNKIFRKTVTIGYMPIMLQSKHCVLYNNT 146

Query: 90   SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
             ++ +   E   + GGYFI+ G+ERV    IL ++   MS  R       +G+   +V  
Sbjct: 147  FEEFIRHGECPMDPGGYFIVKGVERV----ILSQEQ--MSKNRILIETTTQGFLSASVTS 200

Query: 150  RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
                    +V     YL  G + L      ++  LP+ IV+KA+   +D+E         
Sbjct: 201  ATHEVKSRTVV----YLKKGKLYLKHNSLTED--LPIMIVIKAMGMESDMEFLQF----- 249

Query: 210  DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDG----LQSE 265
                      VG+   S+ +  I  E +   +  + + L++IG H + +  G    +   
Sbjct: 250  ----------VGNHYTSKMINSI-EECKAKDVLNQREALRYIGNHLK-IYTGQKGYISKR 297

Query: 266  SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLV---DHTSVSDNPDSLQNQEIL 322
                 A  V+ + +  H+  N   F   I  +  + + +   D T   D+ D   N+ + 
Sbjct: 298  PKIEEARDVLANLVLPHIEVNRYNFKTKIIYIALMVNWILKADETGELDDKDYYGNKRME 357

Query: 323  LPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSI 382
            L G L+++      ED  ++    +Q+       K       +I K +  +P +     I
Sbjct: 358  LAGQLMSLLF----EDLFKQFNTDLQNAANKGLTKKSRSETFDIIKCI--SPHRITQGLI 411

Query: 383  ETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKL 441
             ++     +  +  +D   RAG T    RL+++  +     ++  + F   R  S  R L
Sbjct: 412  HSLSTGNWVLKRFNMD---RAGITQVLSRLSYISALGMMTRLN--SHFEKTRKVSGPRSL 466

Query: 442  LPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGM 501
                WG +CP  TP+GE CGL+ + +    V +  DS            +I+ +L  +G+
Sbjct: 467  QGSQWGMVCPSDTPEGESCGLVKNFSLLTEVTT--DSNDE---------AIVTMLFNLGV 515

Query: 502  -IPSLPKLVKSGPPAVLSVLLDGRVVGVIPSS-EIEKVVAHLRRLKVSAASVIPDDLEVG 559
               +L    +   P+   V L+G+++G+  +     K    LRR       V    L + 
Sbjct: 516  EDANLISGDEVNAPSSYLVFLNGQLLGIHQNPIHFLKQCRLLRRHGRLGKKV---SLHLN 572

Query: 560  YVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDG 619
             +  S+  +  G  +   P   V   ++   P E    +E     E    E         
Sbjct: 573  EMQRSINISSDGGRV-CRPLIVVENCKSKIGPKEIRDIVEGFKSIEDCLKEGLIEYLDVN 631

Query: 620  GRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGF 669
               N++ A          TH EI P  +L VVA L PY  HNQSPRN YQC M KQ +G 
Sbjct: 632  EENNSYIAINENEINEHTTHLEIDPLSILGVVAGLIPYPHHNQSPRNTYQCAMGKQAIG- 690

Query: 670  SVQALKF-RADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAM 728
            ++   +F R D  LY L  PQ P+V+T T      D+ P G NA+VAV++Y+GYD+EDA 
Sbjct: 691  TIGYNQFKRVDTLLYLLYYPQIPMVKTKTIDMINFDKLPAGQNAMVAVMSYSGYDIEDAS 750

Query: 729  ILNKSSVDRGMCHGQIY-QTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYV 787
            ILNK+S+DRG     +Y + E +         DR        ++     S +D DG+   
Sbjct: 751  ILNKASIDRGYGRCFVYRKAECVIKKYKNGACDRVVCPTDEERELPKYKS-LDFDGVCSP 809

Query: 788  GQMIHPGE-------PYCSIYDKTTNSWRTN-------SRKGSESVFVDYVAVDMKNSKN 833
            G +++PG        P  +I   TT++ + +       + KG    +VD V +   +++ 
Sbjct: 810  GSILNPGSIYLNKQVPLNTIGTLTTDTIKDDEYRREVLTYKGPVPSYVDQVLI--TSNEE 867

Query: 834  LPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFP 893
             P K  I  R +R P +GDKFSSRHGQKGV   +    DMPF+  TG+ PD+I+NPH FP
Sbjct: 868  EPLKVKISLRTSRRPELGDKFSSRHGQKGVTGLIVNQEDMPFTN-TGICPDVIMNPHGFP 926

Query: 894  SRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCG 953
            SRMT+  LLE V+ K G + G F   T F        GD   D SK L++         G
Sbjct: 927  SRMTVGKLLELVSGKAGLMDGSFKYGTAFG-------GDKLDDMSKILIE--------AG 971

Query: 954  FNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRK 1013
            ++Y G E LYSG+ G  L   IFIGPVYYQ+L+HMV DK   R+ G    +TRQP +GR 
Sbjct: 972  YSYDGKEELYSGITGKALHAYIFIGPVYYQKLKHMVLDKMHARARGPKSSLTRQPTEGRS 1031

Query: 1014 RGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIR 1073
            R GG+R GEMERD L+ +GA  LL +RL   SD     VC  CG +  + +         
Sbjct: 1032 RDGGLRLGEMERDCLIGYGATNLLLERLMYSSDAFKVCVCKKCGLIGHSGY--------- 1082

Query: 1074 EIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
                           C  C++S     V MPY  + L  E+ +MN+
Sbjct: 1083 ---------------CKFCESSLYCTNVTMPYACKLLFQEMQSMNV 1113


>gi|325969565|ref|YP_004245757.1| DNA-directed RNA polymerase subunit beta [Vulcanisaeta moutnovskia
            768-28]
 gi|323708768|gb|ADY02255.1| DNA-directed RNA polymerase subunit beta [Vulcanisaeta moutnovskia
            768-28]
          Length = 1141

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 358/1206 (29%), Positives = 555/1206 (46%), Gaps = 214/1206 (17%)

Query: 15   LVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRE------- 67
            LVRH I+SF+  +++ L E+ +     +    G     ++ + ++ G P VRE       
Sbjct: 50   LVRHQIDSFNDFVEKKLQEVVNENSLIETEVKGLY---IKLERIEVGKPRVREADASEHI 106

Query: 68   ---------------------------------RFNFGQFPVMLKTRRCHLQGADSQKLV 94
                                             +   G  P+M+K++ C+L G   Q+L+
Sbjct: 107  LYPMEARLRNLTYAAPLYLTMVLYVNDEEVDRQKVYIGDLPIMIKSKFCNLYGLKRQELI 166

Query: 95   SLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDR--REGYTDKAVVIRCV 152
            S  E+  + GGYFI+NG ERV  S      N P       F D+  +   T+ A VI   
Sbjct: 167  SKLEDPDDPGGYFIINGSERVIVSQEDLAPNKP-------FFDKGDKASITNVAKVISIG 219

Query: 153  RKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEK 212
               +++VT++ +   +G + + F        +P  I+++AL    D +I   L    D  
Sbjct: 220  AGYKTTVTVERHR--DGIIYVTFPAIATR--IPFPIIMRALGLETDEDIV--LAVSDDPD 273

Query: 213  YKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAE 272
             + E       L S +  + +A   D         L  IG     V  G   E     A+
Sbjct: 274  IQNEL------LPSLQFSVQIASTID-------DALDFIGSK---VAIGQPREVRIERAK 317

Query: 273  TVIRDYIFVHLNDNND---KFNLLIF-MLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
             V+  Y   HL    +   K  LL+  M++ +  +       D+ D + N+ + L G L+
Sbjct: 318  QVLDRYFLPHLGATEEARVKKALLVGQMVKGVIEMYLGRRQPDDKDHIANKRVRLVGDLL 377

Query: 329  TIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKT 388
                +          K+++QD                I++ +E++ S+    S+ T+++ 
Sbjct: 378  AQLFRAVF-------KQVLQD----------------IRQQLERHYSRGKIPSLVTLVRA 414

Query: 389  G------RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT---SVR 439
                   R A  TG  +  R G +   +R N L  +S  R +    S    RT      R
Sbjct: 415  DIITERIRHALATGNWIGGRTGVSQMLDRTNVLSTLSHLRRIVSNLS----RTQPHFEAR 470

Query: 440  KLLPESWGFLCPVHTPDGEPCGLLNHMT--STCRVASYYDSRGNIRDFSKMRTSILRVLI 497
             L P  WG LC + TP+G+ CGL+ ++   ST  V        N  +  KM       L 
Sbjct: 471  DLHPTQWGRLCAIETPEGQNCGLVKNLALLSTITVGV------NENEVEKM-------LY 517

Query: 498  GVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLE 557
             +G++P L K  K G      V L+GR++G+   +E EK+V  +R ++      I  ++ 
Sbjct: 518  DLGVVPIL-KARKEGVKGT-EVYLNGRLIGI--HTEPEKLVGTVREMRRRGQ--ISHEIN 571

Query: 558  VGYVPLSLGGAYPGLYLFTSPPKFVRPVRNIS--LPSEESQNIELIGPFEQVFME----- 610
            +  +          L +     +  RP+  I    P  + ++IE +   E  + +     
Sbjct: 572  IARIQ---NEYLDELRVNCDGGRLRRPLLIIEDGKPRLKPEHIERLRKGEWSWSDLISNG 628

Query: 611  -IRCPDGGDGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQ 659
             I   DG +    NA  A          TH EI P+ M+  VA++ PY++HNQSPRN+Y+
Sbjct: 629  IIEYLDGDE--EENALVAINPEEDMSKYTHMEIIPSVMIGAVASVIPYAEHNQSPRNIYE 686

Query: 660  CQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAY 719
              MAKQ++GF     +FR D + + L  P+ P+V T      G    P G NA+VA+L Y
Sbjct: 687  AAMAKQSLGFPAANYRFRMDSRGHLLIYPERPLVITRGMELNGYLGRPAGQNAVVALLTY 746

Query: 720  TGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVDRGQ--KLFRRNKDAKSLH 776
            TGY+MEDA+ILN+SS++RGM     ++T ET  +   G + DR +      R       +
Sbjct: 747  TGYNMEDAVILNRSSIERGMYRSVFFRTYETEQMRYPGGEEDRIEIPSAEVRGYKGPEAY 806

Query: 777  SVIDSDGL--PYV----GQMI----HPGEPYCSIYDKTTNSWRTNS----RKGSESVFVD 822
            + +D DG+  P V    G+++     P   Y    +   +S R +S    R+G + + VD
Sbjct: 807  AHLDEDGIVSPEVFVSGGEVLIGKTSPPRFYGVYTEAVVSSARRDSSITVRRGEKGI-VD 865

Query: 823  YVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMR 882
             V +   N     +   ++ R  R P +GDKF+SRHGQKGV   + P  DMPF+   G+ 
Sbjct: 866  SVVITETNEGY--KLVKVKVRELRIPELGDKFASRHGQKGVMGMMIPMQDMPFTE-DGIT 922

Query: 883  PDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLV 942
            PD+I+NPHA PSRMT+  LLES+A K  +L G  +DATPF    +               
Sbjct: 923  PDIIVNPHALPSRMTVGQLLESMAGKVAALRGLTIDATPFEGVTE--------------- 967

Query: 943  DELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMD 1002
            +EL ++L   GF + G EV+YSG+ G +L  +IFIG VYYQ+L HMV+DK   R+ G + 
Sbjct: 968  EELRDLLIRSGFRWDGKEVMYSGLTGRKLEADIFIGVVYYQKLHHMVADKIHARARGPVQ 1027

Query: 1003 QITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTA 1062
             +TRQP +GR R GG+R GEMERD L+AHGAA LL +RL   SD +V  VC  CG  + A
Sbjct: 1028 ILTRQPTEGRSREGGLRLGEMERDVLIAHGAAALLKERLVESSDKYVMYVCEDCG--MIA 1085

Query: 1063 TFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKG-METVAMPYVFRYLAAELAAMNIKI 1121
             +   + + +  I G                  KG +  + +PY F+ L  EL ++ I  
Sbjct: 1086 WYDANKGKPVCPIHG-----------------DKGRIVRIVVPYAFKLLLHELMSLGIYP 1128

Query: 1122 TLQLGD 1127
             ++ GD
Sbjct: 1129 RIEAGD 1134


>gi|164661167|ref|XP_001731706.1| hypothetical protein MGL_0974 [Malassezia globosa CBS 7966]
 gi|159105607|gb|EDP44492.1| hypothetical protein MGL_0974 [Malassezia globosa CBS 7966]
          Length = 1131

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 337/1213 (27%), Positives = 518/1213 (42%), Gaps = 227/1213 (18%)

Query: 12   LRELVRHHIESFDYMLDEGLSEMF------------------------------------ 35
            ++ LV+ HI+SF+Y +D  L  +                                     
Sbjct: 31   VKGLVKQHIDSFNYFVDVDLKNILRANERVTSDIDPKFYLKYTNITVGHPERADPDAIDR 90

Query: 36   ----DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQ 91
                  CR   I+Y+  +  D+E  Y   G  V R+    G+ P+ML++ +C L G D  
Sbjct: 91   SITPHECRLRDITYSAFIYVDIE--YTRGGKIVRRKNVPIGRLPIMLRSNKCWLAGQDEA 148

Query: 92   KLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC 151
             L  + E   + GGYF++ G E+V    IL ++    + +      R+E           
Sbjct: 149  TLARMNECPLDPGGYFVVKGTEKV----ILVQEQLSKNRIIVEADSRKEVVQASVTSSTH 204

Query: 152  VRKDQSSVTLK--LYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
             RK +S V  K  L Y+ + S+            +P+ +V +A+   +D EI   L    
Sbjct: 205  ERKSKSYVLTKHGLIYVKHNSLNED---------IPIVVVFRAMGIQSDKEIL-QLVAGQ 254

Query: 210  DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGL-----QS 264
            DE Y            +E   I L     L + TR Q L ++G   + +  G+      S
Sbjct: 255  DETY------------AELFSINLERAAKLGIFTRQQALDYMGARVKIMRRGVGMRRTAS 302

Query: 265  ESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQK-LFSLVDHTSVSDNPDSLQNQEILL 323
            +    V  TVI  ++ V   D  +K   +  M+++ L  +VD + V D  D + N+ + L
Sbjct: 303  DEALEVLATVIMAHVPVEQGDFRNKTMYIATMVRRVLVCMVDESKVDDR-DYVGNKRLEL 361

Query: 324  PGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQ------ 377
             G L+ +  ++                     KKF+F    NI KV++K P++       
Sbjct: 362  AGQLLALLFEDLF-------------------KKFNFDLKTNIDKVLKK-PNRTSEFDAY 401

Query: 378  ---------IGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGA 428
                     I       + TG  + +      +RAG T    RL+++  +     +   +
Sbjct: 402  NQFFYHGDYITAGFVRAISTGNWSLKRFK--MERAGVTHVLSRLSYISALGMMTRI--SS 457

Query: 429  SFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSK 487
             F   R  S  R L P  WG LCP  TP+GE CGL+ ++     + +  D    +R    
Sbjct: 458  QFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVDEAPIVRLCYA 517

Query: 488  MRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVS 547
            +    + +L G  +            P+   V L+G VVGV  +    + VA  RRL+  
Sbjct: 518  LGLEDINLLTGAELYQ----------PSTYIVFLNGNVVGVTLTPH--RFVAQFRRLR-- 563

Query: 548  AASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNIS--LPSEESQNIELIGPFE 605
             A +I +     +V +     +  + + +   +  RP+  +    P   S++I  +    
Sbjct: 564  RAGLISE-----FVGIYTNTHHQTVNIASDGGRICRPMIIVENGRPQVTSEHIRQLQAGT 618

Query: 606  QVFME------IRCPDGGDGGRRNAF--------PATHEEIHPTGMLSVVANLTPYSDHN 651
              F +      +   D  +    N            TH EI    +L   A L PY  HN
Sbjct: 619  MTFDDFLRRGLVEYLDVNEENDSNIALFEHSIGPSTTHLEIECFTLLGACAGLIPYPHHN 678

Query: 652  QSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTN 711
            QSPRN YQC M KQ +G        R D  LY +  PQ P+V T T    G D+ P G N
Sbjct: 679  QSPRNTYQCAMGKQAIGAIGYNQLNRIDTLLYLMVYPQKPMVSTKTIELIGYDKLPAGQN 738

Query: 712  AIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI----------YQTETIDLSDDGNKVDR 761
            A+VAV++++GYD+EDA+++N +S+DRG    Q+          Y   T D   D    + 
Sbjct: 739  AMVAVMSFSGYDIEDALVMNCASLDRGFGRCQVMRKQSTVLRKYANGTFDRLADAPVNEH 798

Query: 762  GQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTT---NSWRTN------- 811
            G+ L R           +++DG+   G+ + PG+ Y +    T    NS  T        
Sbjct: 799  GEPLRR--------FEALEADGISGAGERLEPGDVYINKQIPTNANDNSAGTMLNSAITY 850

Query: 812  -----SRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQ 866
                 S K     ++D V +   +S     K+ IR   TR P +GDKFSSRHGQKGV   
Sbjct: 851  KNAPLSYKSPVEGYIDQVLISDTDSDQTLVKSLIR--QTRRPELGDKFSSRHGQKGVIGL 908

Query: 867  LWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSV 926
            + P  DMPF+   G+ PD+I+NPH FPSRMT+  ++E V+ K G L G     T F  S 
Sbjct: 909  IVPQADMPFND-QGICPDIIMNPHGFPSRMTVGKMIELVSGKAGVLRGTQEYGTAFGGSK 967

Query: 927  KKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLR 986
                           V+++  +L   G++Y G E + SG+ G  L   ++ GP+YYQ+L+
Sbjct: 968  ---------------VEDMSRILVEHGYHYGGKEYMTSGMTGEPLEAYVYFGPIYYQKLK 1012

Query: 987  HMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSD 1046
            HMV DK   R+ G    +TRQP +GR R GG+R GEMERD L+ +GA  LL +RL   SD
Sbjct: 1013 HMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGATQLLLERLMVSSD 1072

Query: 1047 YHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYV 1106
              V + C  CG +    +                        C  C++SK +  + +PY 
Sbjct: 1073 AFVVNACEECGLLGYNGY------------------------CGYCKSSKHVVKLTVPYA 1108

Query: 1107 FRYLAAELAAMNI 1119
             + L  EL AM +
Sbjct: 1109 TKLLFQELMAMQV 1121


>gi|343427664|emb|CBQ71191.1| probable DNA-directed RNA polymerase III, 130 KD subunit [Sporisorium
            reilianum SRZ2]
          Length = 1170

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 341/1230 (27%), Positives = 511/1230 (41%), Gaps = 227/1230 (18%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
            F  ++ LV+ HI+S++Y +D  L  +                                  
Sbjct: 57   FLQVKGLVKQHIDSYNYFVDHDLKNIIKANEKITSDIDPKFYLKYTDITVGEPRRYDGDA 116

Query: 37   --------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGA 88
                     CR   I+Y+  +  ++E  Y   G  + R+    G+ PVML++ +C L   
Sbjct: 117  LQRPITPHECRLRDITYSAHIFVNIE--YTRGGKIIRRKNVAIGRIPVMLRSNKCVLANK 174

Query: 89   DSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVV 148
              ++L  + E   + GGYF++ G E+V    IL ++        S  R   E  T K  V
Sbjct: 175  SEKELAKMSECPLDPGGYFVVKGTEKV----ILVQEQL------SKNRIIVEADTKKGTV 224

Query: 149  IRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--------LPVGIVLKALVDTNDLE 200
               V         K Y L            GK YL        +P+ +  KA+    D E
Sbjct: 225  SASVTSSTHERKSKSYVLTK---------HGKIYLKHNSLHEDIPIAVAFKAMGIQADRE 275

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I   L   +D+ +K            E   I L E   L + TR Q L +IG   +    
Sbjct: 276  IL-QLVAGHDDIHK------------ELFAINLEEAARLGIYTRKQALDYIGARAKASRK 322

Query: 261  GLQ-----SESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
             L      +E    V  TVI  ++ V   +   K   +  M++++   +      D+ D 
Sbjct: 323  PLSMRRPLAEEALDVLATVIMAHVPVERLNFRPKAIYIASMVRRVLMAMQDEKKVDDRDY 382

Query: 316  LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKK------FDFFNLANIKKV 369
            + N+ + L G L+ +      ED  +K    ++  I+   KK      FD FN  +    
Sbjct: 383  VGNKRLELAGQLLALLF----EDLFKKFNSDLKINIDKVLKKPNRTVEFDAFNQFHFN-- 436

Query: 370  MEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGAS 429
                    I       + TG  + +      +RAG T    RL+F+  +     +   + 
Sbjct: 437  -----GDYITAGFVRAISTGNWSLKRFK--MERAGITHVLSRLSFIAALGMMTRI--SSQ 487

Query: 430  FAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKM 488
            F   R  S  R L P  WG LCP  TP+GE CGL+ ++  T  + +  +     R    +
Sbjct: 488  FEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALTTHITTDVEEEPIARIAFTL 547

Query: 489  RTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSA 548
                + +L G  +            P    V L+G V+GV  +   ++ V   RRL+   
Sbjct: 548  GVEDIHLLTGAELYR----------PDSYVVYLNGNVLGV--TRFPQRFVHQFRRLR--R 593

Query: 549  ASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV-----------------RNISLP 591
            A  I +     +V +     +  +Y+ +   +  RP+                 R +   
Sbjct: 594  AGRISE-----FVSVYTNNHHQTVYIASDGGRICRPLIIVDAVTGQPRVTESHMRQLKSG 648

Query: 592  SEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFP--ATHEEIHPTGMLSVVANLTPYSD 649
            +    +    G  E V +            R   P   TH EI P  +L  VA L PY  
Sbjct: 649  ARRFDDFLSNGLIEYVDVNEENDANIAMYEREIKPQYTTHLEIEPFTLLGAVAGLIPYPH 708

Query: 650  HNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTG 709
            HNQSPRN Y C MAKQ  GF       R D  LY +  PQ P+V++ T    G D+ P G
Sbjct: 709  HNQSPRNTYHCAMAKQAQGFIGHNQLVRIDTLLYLMLYPQQPMVKSRTVELVGYDKLPGG 768

Query: 710  TNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI----------YQTETIDLSDDGNKV 759
            TNA++AV++++GYD+EDA++LNK+S+DRG    Q           Y   T D   D    
Sbjct: 769  TNAMLAVMSFSGYDIEDALVLNKASLDRGFGRSQTMKKSSTVIRKYPNGTHDRLADAPVD 828

Query: 760  DRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPY------CSIYDKTTNSWRTNSR 813
            D   K  +R       + ++++DG+  VG+ +  G+ Y       +  D ++ +    + 
Sbjct: 829  DSTGKRQKR-------YDILEADGIAGVGERVEQGDVYVNKQTPVNANDNSSAAIMIGAS 881

Query: 814  KGSESV---------------FVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRH 858
              + SV               +VD V +   +S     KA I  R TR P +GDKFSSRH
Sbjct: 882  NAAASVAYKSAPLSYKPPVSGYVDQVLITDTDSDQTLIKALI--RQTRRPELGDKFSSRH 939

Query: 859  GQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMD 918
            GQKGV   +    DMPF+   G+ PD+I+NPH FPSRMT+  ++E ++ K G + G    
Sbjct: 940  GQKGVIGLIVQQEDMPFTD-EGINPDIIMNPHGFPSRMTVGKMIELLSGKAGVVTGTLQY 998

Query: 919  ATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIG 978
             T F  S                VD++  +L   G+NY G E L SG+ G  L C ++ G
Sbjct: 999  GTAFGGSK---------------VDDMSALLVEHGYNYAGKETLTSGITGQPLECYVYFG 1043

Query: 979  PVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLH 1038
            P+YYQRL+HMV DK   R+ G    +TRQP +GR R GG+R GEMERD L+ +GA  LL 
Sbjct: 1044 PIYYQRLKHMVQDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGATQLLL 1103

Query: 1039 DRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGM 1098
            +RL   SD      C  CG +    F                        C  C +SK +
Sbjct: 1104 ERLMISSDAFTVHACQRCGLMGYNGF------------------------CPYCSSSKHV 1139

Query: 1099 ETVAMPYVFRYLAAELAAMNIKITLQLGDG 1128
              + +PY  + +  EL AM +   L L D 
Sbjct: 1140 VQLTIPYGTKLMLQELMAMQVVPRLVLEDA 1169


>gi|392587347|gb|EIW76681.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Coniophora puteana RWD-64-598 SS2]
          Length = 1143

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 338/1220 (27%), Positives = 525/1220 (43%), Gaps = 217/1220 (17%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
            F  ++ LV+ HI+SF+Y +D  +  +                                  
Sbjct: 41   FLKVKGLVKQHIDSFNYFVDVDIKNIVKANNKVTSDVDPRFWLKYTDIHVGFPDRTDLDA 100

Query: 37   --------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGA 88
                     CR   I+Y+  ++  V  QY    + V R   N G+ P+ML++ +C L G 
Sbjct: 101  IDKSITPHECRLRDITYSAPIL--VTIQYTRGKNVVKRPNVNIGRLPIMLRSSKCILTGK 158

Query: 89   DSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVV 148
               +L  + E   + GGYF++ G E+V   +++ +Q     ++  +  D  +G    +  
Sbjct: 159  SEAQLARMTECPLDPGGYFVVKGTEKV---ILVQEQLSKNRIIVET--DPVKGVVQSS-- 211

Query: 149  IRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--------LPVGIVLKALVDTNDLE 200
              C       +  K Y             +GK YL        +P+ I LKAL   +D E
Sbjct: 212  --CTSSTHGGLKSKTYVATK---------KGKIYLRHNSIHEDVPIVIALKALGIQSDKE 260

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQP--V 258
            I   LT    E YK    A             L +   L + TR Q L+ IG   +    
Sbjct: 261  IL-LLTAGNTEAYKLAFSAN------------LEDAARLGVFTRHQALEWIGTRVKVNRK 307

Query: 259  IDGLQSESYYAVAE---TVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
            + G +  ++    E   T++  ++ V+  D   K   +  M +++   +D   + D+ D 
Sbjct: 308  VVGPRRPAWEEALEALATIVLAHVPVNGLDFRPKAIFVATMTRRVLMCMDDEKMVDDRDY 367

Query: 316  LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGK--KFDFFNLANIKKVMEKN 373
            + N+ + L G L+ +  ++  + +    K  I   ++   +  +FD FN    +      
Sbjct: 368  VGNKRLELAGQLLALLFEDLFKTFNTNLKSAIDKVLKKPSRTNEFDAFNTMQFQ------ 421

Query: 374  PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
                I +     + TG  + +      +RAG T    RL+F+  +     +   + F   
Sbjct: 422  -GDHITSGFVRAISTGNWSLKRFK--MERAGVTHVLSRLSFISALGMMTRI--SSQFEKT 476

Query: 434  RTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSI 492
            R  S  R L P  WG LCP  TP+GE CGL+ ++     + +  +    IR         
Sbjct: 477  RKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVEEEPIIR--------- 527

Query: 493  LRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVI 552
            +  ++GV  I SL    +   P    V ++G ++G+  +    + V + RRL+ +     
Sbjct: 528  IAYMLGVEDI-SLASGTEIYGPHTFVVNVNGTIIGL--TRYPTRFVTNFRRLRRAGRFS- 583

Query: 553  PDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNIS--LPSEESQNIELIG----PFEQ 606
                   +V + +   +  +++ +   +  RP+  +    P   S +I L+      F+ 
Sbjct: 584  ------EFVGVYVNHHHRTVHIASDGGRICRPMIIVEDGRPRVNSGHISLLKQGHLSFDD 637

Query: 607  VFMEIRCPDGGDGGRRN-----------AFPATHEEIHPTGMLSVVANLTPYSDHNQSPR 655
             F+     +  D    N               TH EI P  +L  VA L PY  HNQSPR
Sbjct: 638  -FLRQGLVEYLDVNEENDSYIALYESDIVATTTHLEIEPFTILGAVAGLIPYPHHNQSPR 696

Query: 656  NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
            N YQC M KQ +G        R D  LY    PQ P+V+T T    G D  P G NA VA
Sbjct: 697  NTYQCAMGKQAIGAIGYNQFNRIDTLLYLSVYPQQPMVKTKTIELIGYDRLPAGQNATVA 756

Query: 716  VLAYTGYDMEDAMILNKSSVDRGMCHGQI----------YQTETIDLSDDGNKVDRGQKL 765
            V++Y+GYD+EDA+ILNK+S+DRG    Q+          Y   T D   D    D GQ  
Sbjct: 757  VMSYSGYDIEDALILNKASLDRGYGRCQVLRKNATLIRKYPNGTFDRLADAPLDDNGQ-- 814

Query: 766  FRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESV------ 819
                   +  + +I  DGL  VG+ + PG+ Y  +  +T  +   N+  G  +       
Sbjct: 815  ------IQKKYDIIQLDGLAGVGERVDPGDVY--VNKQTPTNANDNTFTGQAAAVPYKNA 866

Query: 820  ----------FVDYVAV-DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLW 868
                      ++D + V D +N + L     +  R TR P +GDKFSSRHGQKGVC  + 
Sbjct: 867  PLSYKSPVAGYIDKLMVSDTENDQTL---IKVLIRQTRRPELGDKFSSRHGQKGVCGLIV 923

Query: 869  PDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKK 928
               DMPF+   G+ PD I+NPH FPSRMT+  ++E ++ K G L GK    T F  S   
Sbjct: 924  NQEDMPFND-QGINPDTIMNPHGFPSRMTVGKMIELLSGKAGVLSGKLQYGTAFGGSK-- 980

Query: 929  TNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHM 988
                         V+++  +L   GF+Y G ++L SG+ G  L   ++ GP+YYQ+L+HM
Sbjct: 981  -------------VEDMSRILIEHGFSYAGKDMLTSGITGELLEAYVYFGPIYYQKLKHM 1027

Query: 989  VSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYH 1048
            V DK   R+ G    +TRQP +GR R GG+R GEMERD L+ +GA  LL +RL   SD  
Sbjct: 1028 VMDKMHARARGPRATLTRQPTEGRSREGGLRLGEMERDCLIGYGATQLLLERLMISSDKF 1087

Query: 1049 VADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFR 1108
              + C  CG +    +                        C  C++SK M  + +PY  +
Sbjct: 1088 EVNACQECGLMGYNGW------------------------CPYCKSSKQMAKLTIPYAAK 1123

Query: 1109 YLAAELAAMNIKITLQLGDG 1128
             L  EL AMN+   L L D 
Sbjct: 1124 LLFQELMAMNVVPRLILDDA 1143


>gi|312086795|ref|XP_003145218.1| RNA polymerase III 128kD subunit-PA [Loa loa]
          Length = 1040

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 333/1140 (29%), Positives = 521/1140 (45%), Gaps = 164/1140 (14%)

Query: 43   ISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAE 102
            ++Y+  +  D+E  Y      V+R     G+ PVML++ +C L+  +  +L  ++E   +
Sbjct: 1    MTYSAPISVDIE--YTRGSQRVLRNGLVIGKMPVMLRSSKCVLKNMNESELAHVQECPYD 58

Query: 103  MGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLK 162
             GGYFI+ G E+V   V++ +Q     + ++     R    +    I    +++ S T  
Sbjct: 59   PGGYFIIRGSEKV---VLIQEQ-----LSKNRIMIGRNSKKELQCEILSSTQERKSKT-- 108

Query: 163  LYYLLNGSVRLGFWLQGKEYL--LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAV 220
              Y+ +   R  ++++  +    +PV IV KA+   +D +I + +    +EK+     A 
Sbjct: 109  --YIASKKQR--YYVRHNQLSDDVPVAIVFKAMGFESDHDIVSAVG--LEEKFV----AA 158

Query: 221  GSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEH-----FQPVIDGLQS---ESYYAVAE 272
             +P + E             + T+   LQ+I        F P   G  S     + A+  
Sbjct: 159  MAPSIEE--------CASHQIVTQEGALQYIASKVKMRKFGPFASGTSSTLPREHEAI-- 208

Query: 273  TVIRDYIFVHLN--DNNDKFN--LLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
              + + +  H+   D N K     L  M+++L       +  D+ D   N+ + L G L+
Sbjct: 209  DFLSNLMIAHVPCPDGNMKMKAIYLGLMIRRLMQAEVGDTECDDRDFYGNKRLELAGSLL 268

Query: 329  TIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKT 388
             +  ++  + +  + K++  + +   GK      LA    +++      I  ++   L T
Sbjct: 269  ALLFEDVFKRFNSELKRIADNSL---GK-----TLAAPLDIVKHMRQDLITNALVDALAT 320

Query: 389  GRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPESWG 447
            G    +      +R G T    RL+++  +     ++  ++F   R  S  R L P  WG
Sbjct: 321  GNWTIKRFK--MERQGVTQVLSRLSYISVLGMMTRIN--STFEKTRKVSGPRSLQPSQWG 376

Query: 448  FLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPK 507
             LCP  TP+GE CGL+ ++     + +  D    IR         L    GV  + SL  
Sbjct: 377  MLCPSDTPEGESCGLVKNLALISHITTDSDEEPVIR---------LLYNSGVEDVKSL-H 426

Query: 508  LVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGG 567
                  P    V L+G +VG+  + + +++V+ +R ++          L   +V +S   
Sbjct: 427  FSAIHSPVYHIVFLNGVIVGL--TIDPQRIVSTIRAVRRHG-------LLNEFVSVSTNA 477

Query: 568  AYPGLYLFTSPPKFVRP---VRNISLPSEESQNIELIGPFEQVFMEI------------R 612
            A   +Y+ +   +  RP   V+N  +P    ++IE +    ++F +              
Sbjct: 478  AQRSVYIASDGGRLCRPYIIVKN-GVPQVTQEHIEELKKGCRIFEDFVDDGLIEYLDVNE 536

Query: 613  CPDGGDGGRRNAFP--ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFS 670
              D       N      TH EI P  +L V A L PY  HNQSPRN YQC M KQ MG  
Sbjct: 537  MNDASIAVYENQIKPNTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTI 596

Query: 671  VQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMIL 730
                + R D  +Y L  PQ P+V+T T      ++ P G NA++AV++Y+GYD+EDA++L
Sbjct: 597  GYNQQKRIDSLMYLLVYPQRPLVKTKTIEFCNFEKLPAGQNAVIAVMSYSGYDIEDALVL 656

Query: 731  NKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR--GQKLFRRNKDAKSLHSVIDSDGLPYV 787
            NK+S+DRG     +Y+          N+  DR  G  +    +     H V+D +G+ YV
Sbjct: 657  NKASLDRGYGRCLVYKHAKATARKYPNQTFDRLMGPTVEATTRKPIYKHQVLDQEGIVYV 716

Query: 788  GQMIHPGE-------PYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-- 838
            G  IH  +       P  S     T S   N      S  V+Y  V +     +P  A  
Sbjct: 717  GACIHSKQVMINKHMPVVSTEAGATTS-SNNDGTNVSSHEVEYKDVSVVYRNPVPSYAER 775

Query: 839  -------------NIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDL 885
                          +  R TR P +GDKFSSRHGQKGVC  +    DMPF+ + GM PD+
Sbjct: 776  VLLTYNEDDAHLIKVLLRQTRRPELGDKFSSRHGQKGVCGLIAQQEDMPFNDL-GMCPDM 834

Query: 886  IINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDEL 945
            I+NPH +PSRMT+  L+E ++ K   L GKF   T F           G D+    VD +
Sbjct: 835  IMNPHGYPSRMTVGKLMELLSGKNAVLSGKFHYGTAF-----------GGDQ----VDVV 879

Query: 946  GEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQIT 1005
             E L   GFNY G ++L SG+ G +L   I+ GP+YYQ+L+HMV DK   R+ G    +T
Sbjct: 880  CEELAARGFNYLGKDMLTSGITGQQLCAYIYFGPIYYQKLKHMVLDKMHARARGPRAVLT 939

Query: 1006 RQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFI 1065
            RQP +GR R GG+R GEMERD L+A+GA+ LL +RL   SD    DVCS CG +      
Sbjct: 940  RQPTEGRARDGGLRLGEMERDCLIAYGASMLLMERLMVSSDEFKVDVCSQCGLI------ 993

Query: 1066 HPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI--KITL 1123
                                K  C  C++S+ M T+ +PY  + L  EL +MNI  KI+L
Sbjct: 994  ------------------GYKGWCQMCRSSRTMATIKIPYACKLLFQELQSMNIVPKISL 1035


>gi|71013466|ref|XP_758593.1| hypothetical protein UM02446.1 [Ustilago maydis 521]
 gi|46098251|gb|EAK83484.1| hypothetical protein UM02446.1 [Ustilago maydis 521]
          Length = 1169

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 340/1230 (27%), Positives = 514/1230 (41%), Gaps = 227/1230 (18%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
            F  ++ LV+ HI+S++Y +D  L  +                                  
Sbjct: 56   FLQVKGLVKQHIDSYNYFVDHDLKNIIKANEKITSDIDPKFYLKYTDITVGEPRRYDGDA 115

Query: 37   --------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGA 88
                     CR   I+Y+  +  ++E  Y   G  + R+    G+ PVML++ +C L   
Sbjct: 116  LQRPITPHECRLRDITYSAHIFVNIE--YTRGGKIIRRKNVAIGRIPVMLRSNKCVLANK 173

Query: 89   DSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVV 148
              ++L  + E   + GGYF++ G E+V    IL ++        S  R   E  T K  V
Sbjct: 174  SEKELAKMSECPLDPGGYFVVKGTEKV----ILVQEQL------SKNRIIVEADTKKGTV 223

Query: 149  IRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--------LPVGIVLKALVDTNDLE 200
               V         K Y L            GK YL        +P+ +  KA+    D E
Sbjct: 224  SASVTSSTHERKSKSYVLTK---------HGKIYLKHNSLHEDIPIAVAFKAMGIQADRE 274

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I   L   +D+ +K            E   I L E   L + TR Q L  IG   +    
Sbjct: 275  IL-QLVAGHDDIHK------------ELFAINLEEAARLGIYTRKQALDFIGARAKASRK 321

Query: 261  GLQ-----SESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
             L      SE    V  TVI  ++ V   +   K   +  M++++   +      D+ D 
Sbjct: 322  PLSMRRPLSEEALDVLATVIMAHVPVERLNFRPKAIYIASMVRRVLMAMQDEKKVDDRDY 381

Query: 316  LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKK------FDFFNLANIKKV 369
            + N+ + L G L+++      ED  +K    ++  I+   KK      FD FN  +    
Sbjct: 382  VGNKRLELAGQLLSLLF----EDLFKKFNSDLKMNIDKVLKKPNRTVEFDAFNQFHFN-- 435

Query: 370  MEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGAS 429
                    I +     + TG  + +      +RAG T    RL+F+  +     +   + 
Sbjct: 436  -----GDYITSGFVRAISTGNWSLKRFK--MERAGITHVLSRLSFIAALGMMTRI--SSQ 486

Query: 430  FAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKM 488
            F   R  S  R L P  WG LCP  TP+GE CGL+ ++  T  + +  +     R    +
Sbjct: 487  FEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALTTHITTDVEEEPIARIAFTL 546

Query: 489  RTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSA 548
                + +L G  +            P    V L+G V+GV  +   ++ V   RRL+  A
Sbjct: 547  GVEDIHLLTGAELYR----------PDSYVVYLNGNVLGV--TRFPQRFVLQFRRLR-RA 593

Query: 549  ASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISL----PSEESQNIELIGPF 604
              V        +V +     +  +Y+ +   +  RP+  +      P     +++ +   
Sbjct: 594  GRVSE------FVSVYTNHHHQTVYIASDGGRICRPLIIVDAFTGHPRVTESHMQQLKSG 647

Query: 605  EQVFME------IRCPDGGDGGRRNAFPATHE---------EIHPTGMLSVVANLTPYSD 649
             + F +      I   D  +    N     HE         EI P  +L  VA L PY  
Sbjct: 648  ARRFDDFLHNGLIEYVDVNEENDANIAMYEHEIKPQYTTHLEIEPFTILGAVAGLIPYPH 707

Query: 650  HNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTG 709
            HNQSPRN YQC M KQ  G        R D  LY +  PQ P+V++ T    G D+ P G
Sbjct: 708  HNQSPRNTYQCAMGKQGQGAIGYNQLIRIDTLLYLMLYPQQPMVKSRTIELIGYDKLPAG 767

Query: 710  TNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI----------YQTETIDLSDDGNKV 759
            TN++VAV++Y+GYD+EDA++LNK+S+DRG    Q           Y   T D   D    
Sbjct: 768  TNSMVAVMSYSGYDIEDALVLNKASLDRGFGRSQTMKKSSTVIRKYPNGTHDRLADAPVD 827

Query: 760  DRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPY------CSIYDKTTNSWRTNSR 813
            D   K  +R       + ++++DG+  VG+ +  G+ Y       +  D ++ +    + 
Sbjct: 828  DTTGKRQKR-------YDILEADGIAGVGERVEQGDVYVNKQTPVNANDNSSAAIMIGAS 880

Query: 814  KGSESV---------------FVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRH 858
              + SV               ++D V +   +S     KA I  R TR P +GDKFSSRH
Sbjct: 881  NAAASVAYKSAPLSYKPPVSGYIDQVLITDTDSDQTLIKALI--RQTRRPELGDKFSSRH 938

Query: 859  GQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMD 918
            GQKGVC  +    DMPF+   G+ PD+I+NPH FPSRMT+  ++E ++ K G + G    
Sbjct: 939  GQKGVCGLIVQQEDMPFTD-QGINPDIIMNPHGFPSRMTVGKMIELLSGKAGVITGTLQY 997

Query: 919  ATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIG 978
             T F  S                V+++  +L   G+NY G E L SG+ G  L C ++ G
Sbjct: 998  GTAFGGSK---------------VEDMSALLVENGYNYAGKETLTSGITGQPLECYVYFG 1042

Query: 979  PVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLH 1038
            P+YYQRL+HMV DK   R+ G    +TRQP +GR R GG+R GEMERD L+ +GA  LL 
Sbjct: 1043 PIYYQRLKHMVQDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGATQLLL 1102

Query: 1039 DRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGM 1098
            +RL   SD      C  CG +    F                        C  C +SK +
Sbjct: 1103 ERLMISSDAFTVHACQKCGLMGYNGF------------------------CPYCSSSKHV 1138

Query: 1099 ETVAMPYVFRYLAAELAAMNIKITLQLGDG 1128
              + +PY  + +  EL AM +   L L D 
Sbjct: 1139 VQLTIPYGTKLMLQELMAMQVVPRLVLEDA 1168


>gi|324502244|gb|ADY40989.1| DNA-directed RNA polymerase III subunit RPC2 [Ascaris suum]
          Length = 1135

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 339/1219 (27%), Positives = 539/1219 (44%), Gaps = 216/1219 (17%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMF--------------------------------- 35
            F  +R LV+ HI SFDY ++E +  +                                  
Sbjct: 24   FLQVRGLVKQHIASFDYFINEDIKNILRANERITSDVNPSFYVKYLDIRVGTPSSEEGFT 83

Query: 36   --------DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQG 87
                      CR   ++Y+  +  D+E  Y      V+R     G+ P+ML+  +C L+ 
Sbjct: 84   QLNEKISPHECRLRDMTYSAPIQVDIE--YTRGNQRVLRNGIVIGRMPIMLRCSKCVLKD 141

Query: 88   ADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAV 147
             + ++L  ++E   + GGYFI+ G E+V    +L ++    + +      ++E       
Sbjct: 142  MNEEELARVQECPYDPGGYFIIRGSEKV----VLIQEQLSKNRIMIGRNSKKE------- 190

Query: 148  VIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--LPVGIVLKALVDTNDLEIFNHL 205
             ++C     +S      Y+++   R  ++L+  +    +P+ I+ KA+   +D +I + +
Sbjct: 191  -LQCEVLSSTSDRKSKTYVISKKQR--YYLKHNQLSDDIPIAIIFKAMGFESDYDIVSAV 247

Query: 206  TCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSE 265
                +EK+     A  +P + E             + T+   LQ I    +    G    
Sbjct: 248  G--LEEKFV----AAMAPSIEE--------CAAHQIVTQESALQFIASKVKMRKFGTGGS 293

Query: 266  SYYAVAETVIRDYI----FVHL--NDNNDKFNLLI--FMLQKLFSLVDHTSVSDNPDSLQ 317
                  E    D++      H+  +D N K   +    M+++L       +  D+ D   
Sbjct: 294  GPTPPKEHEAIDFLTSLMICHIPSHDGNMKLKAIYVGLMVRRLMQAEMGYTECDDRDFYG 353

Query: 318  NQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQ 377
            N+ + L G L+ +      ED  ++    ++   +N+  K     L  +K + +   +  
Sbjct: 354  NKRLELAGSLMGLLF----EDVFKRFNSELKRIADNSLGKTLAAPLDIVKHMRQDLVTNA 409

Query: 378  IGTSIET---MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLR 434
            +  +I T   ++K  R+         +R G T    RL+++  +     ++  ++F   R
Sbjct: 410  MVNAIATGNWIIKRFRM---------ERHGVTQVLSRLSYISVLGMMTRIN--STFEKTR 458

Query: 435  TTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
              S  R L P  WG LCP  TP+GE CGL+ ++     + +  D +  IR         L
Sbjct: 459  KVSGPRSLQPSQWGMLCPSDTPEGESCGLVKNLALISHITTDSDEKPVIR---------L 509

Query: 494  RVLIGVGMIPSLP-KLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVI 552
                GV  + SL   LV S  P    V L+G +VG+  + + +++V+ +R       +V 
Sbjct: 510  LYNSGVEDLQSLHFSLVHS--PEYHLVFLNGAIVGI--TIDPQRIVSTIR-------AVR 558

Query: 553  PDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNIS--LPSEESQNIELIGPFEQVFME 610
             + L   +V +S   A   +Y+ +   +  RP   ++   P     +I+ +    ++F +
Sbjct: 559  RNGLLSEFVSVSTNAAQRSVYIASDGGRLCRPYIIVTDGKPRITQHDIDELKKGHRIFED 618

Query: 611  I------------RCPDGGDGGRRNAFPA--THEEIHPTGMLSVVANLTPYSDHNQSPRN 656
                            D       N   A  TH EI P  +L V A L PY  HNQSPRN
Sbjct: 619  FVDEGLIEYLDVNEMNDASIAVYENQIKADTTHLEIEPFTLLGVCAGLIPYPHHNQSPRN 678

Query: 657  MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
             YQC M KQ MG      + R D  +Y L  PQ P+V++ T      ++ P G NAI+AV
Sbjct: 679  TYQCAMGKQAMGTIGYNQQKRIDSLMYLLVYPQRPLVKSKTIEMCNFEKLPAGQNAIIAV 738

Query: 717  LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR--GQKLFRRNKDAK 773
            ++Y+GYD+EDA++LNK+S+DRG     +Y+          N+  DR  G  +    +   
Sbjct: 739  MSYSGYDIEDALVLNKASLDRGYGRCLVYKHAKGTAKKYPNQTFDRLMGPTIEATTRKPI 798

Query: 774  SLHSVIDSDGLPYVGQ-------MIHPGEPYCSI--------------------YDKTTN 806
              H V+D +G+ + G        MI+   P  S+                    Y   + 
Sbjct: 799  YKHQVLDQEGIVFAGARIRSKQVMINKHMPIVSLEASAVAQSSGVVQAGNRNVEYKDVSI 858

Query: 807  SWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQ 866
            S+R+     +E V + Y   D    K       +  R TR P +GDKFSSRHGQKGVC  
Sbjct: 859  SYRSPVPSYAERVLLTYNEDDAHLIK-------VVLRQTRRPELGDKFSSRHGQKGVCGL 911

Query: 867  LWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSV 926
            +    DMPF+ + GM PD+I+NPH +PSRMT+  L+E ++ K   L G+F   T FA   
Sbjct: 912  IAQQEDMPFNDL-GMCPDMIMNPHGYPSRMTVGKLMELLSGKNAILSGRFHYGTAFA--- 967

Query: 927  KKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLR 986
                GD         V ++ E L   GFNY G ++L SG+ G +L+  I+ GP+YYQ+L+
Sbjct: 968  ----GDQ--------VADVCEELAARGFNYLGKDMLTSGITGQQLSAYIYFGPIYYQKLK 1015

Query: 987  HMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSD 1046
            HMV DK   RS G    +TRQP +GR R GG+R GEMERD L+A+GA+ LL +RL   SD
Sbjct: 1016 HMVLDKMHARSRGPRAVLTRQPTEGRARDGGLRLGEMERDCLIAYGASMLLMERLMVSSD 1075

Query: 1047 YHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYV 1106
                DVCS CG +                          K  C  C+ S+ M T+ +PY 
Sbjct: 1076 EFHVDVCSQCGLI------------------------GYKGWCQKCRCSRTMATIKIPYA 1111

Query: 1107 FRYLAAELAAMNI--KITL 1123
             + L  EL +MNI  KI L
Sbjct: 1112 CKLLFQELQSMNIVPKINL 1130


>gi|145341844|ref|XP_001416013.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144576236|gb|ABO94305.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 1146

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 350/1225 (28%), Positives = 543/1225 (44%), Gaps = 211/1225 (17%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMF--------------------------------- 35
            F  +R LVR HI+SF+Y+++E + ++                                  
Sbjct: 28   FLKVRGLVRQHIDSFNYLVNEEIKKIIHAKANERVTCDSDPNFYLKYTNIHVGRPSVEED 87

Query: 36   --------DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN------FGQFPVMLKTR 81
                      CR   ++Y   +  DVE  Y      V R+  N       G+ P+ML++ 
Sbjct: 88   YVVEEITPQQCRLRDMTYAAPITVDVE--YTRGKEIVTRQAKNGVGGVVIGRIPLMLRSS 145

Query: 82   RCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREG 141
            RC L G +  +L  L E   + GGYFI+ G+E+V   +++ +Q   +S  R       +G
Sbjct: 146  RCVLTGKNEDELARLGECPLDPGGYFIVKGVEKV---ILIQEQ---LSKNRIIIEVDAKG 199

Query: 142  YTDKAVVIRC-VRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--LPVGIVLKALVDTND 198
                +V      RK ++++ +K     +G     F+L+   +   +P+ IVLKA+   +D
Sbjct: 200  EIGASVTSSTHERKSKTNIVVK-----HGK----FYLRHNTFADDIPIMIVLKAMGLESD 250

Query: 199  LEIFNHLTCCYDEKYKKEKGAVGS-PLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQP 257
             E                   +GS P  +  +   L E Q   + T  Q L++     + 
Sbjct: 251  QEAVQ---------------MIGSEPAYAMLLGPTLQECQAAGVFTTQQALEYCANKVRV 295

Query: 258  VIDGLQSE--------SYYAVAETVIRDYIFVHLN----DNNDKFNLLIFMLQKLF-SLV 304
            V   + +         S    A  ++   +  H+     D   K   +  M++++  +++
Sbjct: 296  VKTHMTNRPGVRNFGRSRVDEARDILAGVVLAHVPVTSYDFRQKCAYISIMVRRILNAML 355

Query: 305  DHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE----DWLRKGKKLIQDEIENNGKKFDF 360
            D T + D+ D   N+ + L G LI +  ++  +    D  R+   ++     N   +FD 
Sbjct: 356  DPTQI-DDKDYYGNKRLELAGQLIALLFEDCFKRLNADLKRQADAVLSKA--NRATQFDI 412

Query: 361  FNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISF 420
              L  I++    N  +   +S    +K  R+         +R G T    RL+F+  +  
Sbjct: 413  --LKCIRQDTLSNGLEHAISSGNWTVKRFRM---------ERKGVTQVLSRLSFISALGM 461

Query: 421  FRAVHRGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSR 479
               +   + F   R  S  R L P  WG LCP  TP+GE CGL+ ++     V +  D  
Sbjct: 462  MTRI--TSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGESCGLVKNLALMTHVTTD-DEE 518

Query: 480  GNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVA 539
              +R  +          +  G + S         P+   VL++G ++GV   ++ E    
Sbjct: 519  EPLRRLAHALGVEPLTWLNAGEMHS---------PSGAHVLMNGSLLGV--HAQPEAFSH 567

Query: 540  HLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV----RNISLPSEES 595
              R+L+ +          +G   +S+  A   +Y+ +   +  RP+    R   L ++E 
Sbjct: 568  AFRKLRRAG--------RIGEF-VSVYTADGCVYISSDGGRVCRPLIIIERGEPLLTQEH 618

Query: 596  QNIELIG--PFEQVFMEIRCPDGGDGGRRNAFPA----------THEEIHPTGMLSVVAN 643
             +    G   F     E            N++ A          TH EI P  +L V A 
Sbjct: 619  LDELKDGHRTFNDFLREGLVEYLDVNEENNSYIALYEDEVNDETTHLEIEPFTLLGVCAG 678

Query: 644  LTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGI 703
            + PY  HNQSPRN YQC M KQ MG        R D  +Y L  PQ PIV+T T    G 
Sbjct: 679  IIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLNRMDTLMYLLVYPQKPIVKTKTIELIGY 738

Query: 704  DEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNK-VDR- 761
            D    G NA +AV++Y+GYD+EDA+++N++S+DRG     + +  +  +    N+ +DR 
Sbjct: 739  DRLGAGQNATIAVMSYSGYDIEDAIVMNRASLDRGFGRCTVLRKYSAQVKKYSNRTMDRI 798

Query: 762  -GQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCS------IYDKTTNS------- 807
             G K   R  +  S H ++D DG+  VG  I PG+ Y +        D   N        
Sbjct: 799  VGPKDDHR-ANQNSRHHLLDDDGIAAVGGRIKPGDIYVNKQTPVNTRDPMANPHAMPDTM 857

Query: 808  WRTN--SRKG--SESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGV 863
            +R+N  S KG   ES  VD V + M +      K  +R   TR P +GDKFSSRHGQKGV
Sbjct: 858  YRSNPLSYKGPAGESAIVDKVLLTMTDEGQFNIKTLVR--QTRRPEVGDKFSSRHGQKGV 915

Query: 864  CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFA 923
            C  +    D PFS   G+ PDLI+NPH FPSRMT+  ++E +  K G   G+F D T F 
Sbjct: 916  CGIILDQEDFPFSE-RGITPDLIMNPHGFPSRMTVGKMIELLGGKAGLESGRFHDGTAFG 974

Query: 924  NSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQ 983
                   GDT        V+ + + L   G++Y G ++L+ G+ G  L   +F+GPVYYQ
Sbjct: 975  -------GDT--------VEAIQQTLVESGYSYKGKDMLHCGITGEALEVNVFMGPVYYQ 1019

Query: 984  RLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHT 1043
            +L+HMV DK   R+ G    +TRQP +GR R GG+R GEMERD L+ +GA+ L+ +RL  
Sbjct: 1020 KLKHMVQDKMHARARGPRVVLTRQPTEGRARDGGLRLGEMERDCLIGYGASQLILERLMI 1079

Query: 1044 CSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAM 1103
             SD   A VC+ CG +    F H   R               +  C  C+T   + T+ +
Sbjct: 1080 SSDQFEAQVCTKCGLL---GFQHHITR---------------RNACTLCKTEAEVATLKL 1121

Query: 1104 PYVFRYLAAELAAMNIKITLQLGDG 1128
            PY  + L  EL +MNI   L L + 
Sbjct: 1122 PYACKLLFQELQSMNIAPRLSLTEA 1146


>gi|47219788|emb|CAG03415.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1171

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 328/1142 (28%), Positives = 519/1142 (45%), Gaps = 158/1142 (13%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
             CR   ++Y+  +  D+E  Y      ++R     G+ P+ML++  C L G    +   L
Sbjct: 130  ECRLRDMTYSAPITVDIE--YTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPMEFAKL 187

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC-VRKD 155
             E   + GGYFI+ G E+V   +++ +Q   +S  R      R+G    +V      +K 
Sbjct: 188  NECPLDPGGYFIVKGQEKV---ILIQEQ---LSKNRIIVDQDRKGAVGASVTSSTHEKKS 241

Query: 156  QSSVTLKLYYLLNGSVRLGFWLQGKEYL--------LPVGIVLKALVDTNDLEIFNHLTC 207
            ++++ +K               QG+ YL         P+ I+ K +   +D EI   +  
Sbjct: 242  RTNMIVK---------------QGRFYLRHNTLSEDAPIAIIFKGMGVESDQEIVQMIG- 285

Query: 208  CYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ-PVIDGLQSES 266
                    E+  + S   S      L E Q   + T+ Q L+++G   +   + G   ++
Sbjct: 286  -------TEENVMASFAPS------LEECQKAQIFTQTQALRYLGNKVRRQRMWGGPKKT 332

Query: 267  YYAVAETVIRDYIFVHLNDNNDKFN----LLIFMLQKLFSLVDHTSVSDNPDSLQNQEIL 322
                A  ++   I  H+      F      L  M++++  L    +  D+ D   N+ + 
Sbjct: 333  KMEEARELLASLILTHVPVKEFNFRAKCIYLAVMVRRVI-LAQGDNKVDDRDYYGNKRLE 391

Query: 323  LPGHLITIYLKEKLEDWLRKGKKLIQDEI--ENNGKKFDFFNLANIKKVMEKNPSKQIGT 380
            L G L+++  ++  + +  + KK I D+I  +    +FD         V++     QI  
Sbjct: 392  LAGQLLSLLFEDLFKKFNSELKK-IADQIIPKQRAAQFD---------VVKHMRQDQITN 441

Query: 381  SIETMLKTGRLATQT-GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-V 438
             +   + TG  + +   +D   R G T    RL+F+  +     +   + F   R  S  
Sbjct: 442  GMVNAISTGNWSLKRFKMD---RQGVTQVLSRLSFISALGMMTRI--SSQFEKTRKVSGP 496

Query: 439  RKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIG 498
            R L P  WG LCP  TP+GE CGL+ ++     + +  +    I+    +    + +L G
Sbjct: 497  RSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLAFNLGVEDVNLLCG 556

Query: 499  VGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEV 558
              +            P+V  V L+G ++GVI   + +K+V   R ++   A  I +    
Sbjct: 557  EEL----------SYPSVFLVFLNGNILGVI--RDHQKLVGTFRLMR--RAGFINE---- 598

Query: 559  GYVPLSLGGAYPGLYLFTSPPKFVRP--VRNISLPSEESQNIELIGP----FEQVFMEIR 612
             +V +S       +Y+ +   +  RP  +     P  +++++E +      FE  F+   
Sbjct: 599  -FVSISTNLTDRCVYISSDGGRLCRPYIIVKKGQPMVKNKHMEDLSQGYRNFED-FLHDG 656

Query: 613  CPDGGDGGRRNAFP-----------ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQ 661
              +  D    N               TH EI P  +L V A L PY  HNQSPRN YQC 
Sbjct: 657  LVEYLDVNEENDCQIALYEHMIHKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCA 716

Query: 662  MAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTG 721
            M KQ MG      + R D  +Y L  PQ P+V+T T      ++ P G NA VAV++Y+G
Sbjct: 717  MGKQAMGTIGYNQRNRIDTLMYLLAYPQRPMVKTKTIEIIEFEKLPAGQNATVAVMSYSG 776

Query: 722  YDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR--GQKLFRRNKDAKSLHSV 778
            YD+EDA+ILNK+S+DRG     +Y+     L    N+  D+  G  L    +     H++
Sbjct: 777  YDIEDALILNKASLDRGFGRCLVYKNTKCTLRRYTNQTFDKVMGPMLDAATRKPIWRHNI 836

Query: 779  IDSDGLPYVGQ-------MIHPGEPYCSI--YDKTTNSWRTNSR------KGSESVFVDY 823
            +D+DG+   G+       +++   P  +    + +T + +   R      KGS   +++ 
Sbjct: 837  LDADGICSPGERVENKQVLVNKSMPTVTQTPLEGSTQTGQPQYRDVPICYKGSTDSYIEK 896

Query: 824  VAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRP 883
            V +          K  I  R TR P IGDKFSSRHGQKGVC  + P  DMPF   TG+ P
Sbjct: 897  VMISSNAEDAFLIK--ILLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCD-TGICP 953

Query: 884  DLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVD 943
            D+I+NPH +PSRMT+  L+E +A K G L G+F   T F  S                V 
Sbjct: 954  DIIMNPHGYPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSK---------------VK 998

Query: 944  ELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQ 1003
            ++ E L   G+NY G + + SG+ G  L   I+ GPVYYQ+L+HMV DK   R+ G    
Sbjct: 999  DVCEDLIRHGYNYQGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAV 1058

Query: 1004 ITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTAT 1063
            +TRQP +GR R GG+R GEMERD L+ +GA+ LL +RL   SD    DVC  CG      
Sbjct: 1059 LTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCG------ 1112

Query: 1064 FIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITL 1123
                    +    G     +   + CH C++S  + ++ +PY  + L  EL +MNI   L
Sbjct: 1113 --------LLGYSGWQVKLSHLDLECHYCKSSCQVSSLRIPYACKLLFQELQSMNIIPRL 1164

Query: 1124 QL 1125
            +L
Sbjct: 1165 KL 1166


>gi|313237761|emb|CBY12898.1| unnamed protein product [Oikopleura dioica]
          Length = 1139

 Score =  395 bits (1014), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 335/1207 (27%), Positives = 542/1207 (44%), Gaps = 230/1207 (19%)

Query: 9    FEPLRELVRHHIE--SFDYMLDEGLSEM----------------FDH------------- 37
            F   R LV+ H++  SF+Y+L +GL ++                +DH             
Sbjct: 26   FLETRGLVKQHLDLDSFNYLLTQGLQKIIKANARTDVDQNFFWNYDHIYVDPPDVEYGMR 85

Query: 38   --------CRQAKISYTGKLMADVEF----QYLDAGSPVVRERFNFGQFPVMLKTRRCHL 85
                    CR   ++Y+  +  DV +    Q   A   V+      G+ P+ML++ RC L
Sbjct: 86   SEAITPHECRLRDMTYSAPIKVDVTYVRDNQIRKARGLVI------GRMPIMLRSARCVL 139

Query: 86   QGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDK 145
                 ++    KE   + GGYF++ G E+V            + M   +  +R     DK
Sbjct: 140  ANMSQEQFFKAKECPLDPGGYFVVKGAEKV------------LLMQEQAVSNRILVEKDK 187

Query: 146  AVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVL--KALVDTNDLEIFN 203
              +   V K +S        L+    ++  +++  +   PV +V+  KAL    D EI  
Sbjct: 188  TGMFCAVVKSKSDTANTQTNLIQSKNKI--YVKQNKLREPVNVVVLFKALGIERDQEI-A 244

Query: 204  HLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHF----QPVI 259
             L    D        A+ +P         L E Q L + ++ Q ++++ +       P++
Sbjct: 245  ELIATEDSTL-----ALLAP--------SLFECQQLEIFSQNQAMKYLEKTIMRIQNPIV 291

Query: 260  DGLQSESYYAVA-----ETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPD 314
               Q +S + V      E  + +++   L  N       +    K   ++     +D+ D
Sbjct: 292  SRSQMQSRFQVRTPRNREQEVHNWLVSTLLVN-------VPYCYKRRGMIK----ADDRD 340

Query: 315  SLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNP 374
               N+ I L G LI++  +E  +++  + ++ I  ++E    +     + ++   M K+ 
Sbjct: 341  YYGNKRIQLAGDLISLLFEEHFKNFNDELRRTIGKKLEKKTAQ-----VVDVISSM-KSL 394

Query: 375  SKQIGTSIETMLKTGRLATQT-GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAG- 432
              +I  ++E  ++TG    +   +D   R G T    R++F+  I           F   
Sbjct: 395  QNKITLAMEAAIQTGNWNLKRFKMD---RKGITEILNRMSFISIILVGTMTRIKGHFEKT 451

Query: 433  LRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSI 492
            ++ T  R L    WG LCP  TP+G  CGL+ +M     V ++ D +            I
Sbjct: 452  MKVTGPRALQGSQWGMLCPSDTPEGAQCGLVKNMALLSHVTTFEDDK-----------PI 500

Query: 493  LRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVI--PSSEIEKVVAHLRRLKVSAAS 550
             R+LI +G+  +          A   V L+G +VG    P S + + V  +RR     A 
Sbjct: 501  HRLLINLGVEETSTLSGYDLHGANYLVFLNGALVGATRNPKS-LTRTVQLIRR-----AG 554

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP-------------------------- 584
             +P+     +V + +   +  +YL +   +  RP                          
Sbjct: 555  RLPE-----FVSVYVSEEHRAVYLASDGGRLTRPCIIVENGRPKVTQKHINALLEGRVKF 609

Query: 585  ---VRN-----ISLPSEESQNIE--LIGPFEQVFMEIRCPDGG------DGGRRNAFPAT 628
               V+N     + +  E S  I+      F ++F      +        +  + N F   
Sbjct: 610  PDFVKNGLIEYLDVNEENSALIDTTFFNYFRKIFFNQNLINRWLKRAYLNFKKVNNFLNC 669

Query: 629  HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTP 688
             +EI P  +L V A L PY DHNQSPRN YQC M KQ MG      + R D  LY+L  P
Sbjct: 670  SKEIEPFALLGVCAGLIPYPDHNQSPRNTYQCAMGKQAMGTIAMNQRERIDSCLYNLVYP 729

Query: 689  QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
            Q P+V+T T    G ++ P G NA VAV++Y+GYD+EDA++LNK+SVDRG     +Y+ E
Sbjct: 730  QRPLVKTRTIELIGFEQLPAGQNATVAVMSYSGYDIEDALVLNKASVDRGYGRCLVYRNE 789

Query: 749  TIDLSDDGNKVDR-GQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNS 807
               L   G  V+   +++     DAKS   +   + L   G ++ PGE    + D     
Sbjct: 790  KTQLQRRGTLVETIEERIDGPALDAKSGEKIRADECLDMDG-IVAPGE---RVKD----- 840

Query: 808  WRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQL 867
             R  +   S+ + ++ V +    +  +     + +R TR P +GDKFSSRHGQKGV   +
Sbjct: 841  -RAPTMAKSQPIHIERVMISEDATWRM---VKLSYRQTRRPELGDKFSSRHGQKGVTGLI 896

Query: 868  WPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVK 927
             P  +MPF+ + GM PD+I+NPH +PSRMT+  L+E + +K G+L GKF   T F     
Sbjct: 897  VPQENMPFNEI-GMCPDVIMNPHGYPSRMTVGKLMECIGSKAGALSGKFHYGTAFG---- 951

Query: 928  KTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRH 987
               G+T  + +++++D         GFNY+G ++L SG  G  L   IF+GP+YYQ+LRH
Sbjct: 952  ---GNTTEEMAQTMLD--------YGFNYYGKDLLMSGETGEPLEAYIFMGPIYYQKLRH 1000

Query: 988  MVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDY 1047
            MV DK   R+TG +  +TRQP++GR + GG+R GEMERD+LLA+GA+ LL++R    SD 
Sbjct: 1001 MVMDKMHARATGKVHNLTRQPLEGRAKDGGLRLGEMERDALLAYGASNLLNERFFYSSDK 1060

Query: 1048 HVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVF 1107
            +  ++C  CG              +    G           C  C+T + M ++ MPY  
Sbjct: 1061 YSVEICGNCG--------------LHGYSGW----------CRVCRTGEHMASINMPYAC 1096

Query: 1108 RYLAAEL 1114
            + L  EL
Sbjct: 1097 KLLLQEL 1103


>gi|299741189|ref|XP_001834288.2| DNA-directed RNA polymerase [Coprinopsis cinerea okayama7#130]
 gi|298404597|gb|EAU87529.2| DNA-directed RNA polymerase [Coprinopsis cinerea okayama7#130]
          Length = 1149

 Score =  394 bits (1013), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 335/1222 (27%), Positives = 529/1222 (43%), Gaps = 213/1222 (17%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
            F  ++ LV+ HI+SF+Y +D  +  +                                  
Sbjct: 39   FLKVKGLVKQHIDSFNYFVDVDIKNIVKANNKVTSDVDPRFWLKYTDINVGFPDRNEMEA 98

Query: 37   --------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGA 88
                     CR    +Y+  ++  +++     G  +V+   N G+ P+ML++ +C L G 
Sbjct: 99   IDKRVTPHECRLRDTTYSAPIIVTIQYT---RGKSIVQRNVNIGRLPIMLRSNKCVLTGK 155

Query: 89   DSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVV 148
               +L  + E   + GGYF++ G E+V   +++ +Q     ++  +  D  +G    +  
Sbjct: 156  TEAQLARMTECPLDPGGYFVVKGTEKV---ILVQEQLSKNRIIVET--DNVKGIVQAS-- 208

Query: 149  IRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--------LPVGIVLKALVDTNDLE 200
              C       +  K Y +           +G+ YL        +P+ I LKAL   +D E
Sbjct: 209  --CTSSTHGGLKSKTYVITK---------KGRIYLRHNSIHEDVPIVIALKALGIQSDKE 257

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQD---LSLTTRLQCLQHIGEHFQP 257
            I   LT    E+YK                I  A ++D   L + TR Q L++IG   + 
Sbjct: 258  IL-LLTAGNTEEYKT---------------IFSANIEDAAKLGIFTRHQALEYIGARVKV 301

Query: 258  --VIDGLQSESYYAVAE---TVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDN 312
               + G +  ++    E   T++  ++ V   D   K   +  M +++   +D  S+ D+
Sbjct: 302  NRKVMGPRRPAWEEALEALATIVLAHVPVQGLDFRAKAIFVATMTRRVLMAMDDESMVDD 361

Query: 313  PDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGK--KFDFFNLANIKKVM 370
             D + N+ + L G L+ +  ++  + +    K  I   ++   +  +FD FN   ++   
Sbjct: 362  RDYVGNKRLELAGQLLALLFEDLFKTYNSNLKSAIDKVLKKPSRTSEFDAFNTMQMQ--- 418

Query: 371  EKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASF 430
                   + +     + TG  + +      +RAG T    RL+F+  +     +   + F
Sbjct: 419  ----GDHLTSGFVRAISTGNWSLKRFK--MERAGVTHVLSRLSFISALGMMTRI--SSQF 470

Query: 431  AGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMR 489
               R  S  R L P  WG LCP  TP+GE CGL+ ++     + +  +    IR      
Sbjct: 471  EKTRKVSGPRALQPSQWGVLCPSDTPEGEACGLVKNLALMTHITTDVEEGPIIR------ 524

Query: 490  TSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAA 549
               L  ++GV  I SL    +   P    V ++G ++GV  +    K V+  R  K+  A
Sbjct: 525  ---LAFMLGVEDI-SLTTGTEIYGPNSYVVYINGTIIGVTRTPT--KFVSQFR--KLRRA 576

Query: 550  SVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIG------P 603
                +     +V + +   +  +++ +   +  RP+  +        +  ++        
Sbjct: 577  RRFSE-----FVSVYINHHHRAVHIASDGGRICRPMIIVEKGRSRVTSDHIVQLKKGNVT 631

Query: 604  FEQVFMEIRCPDGGDGGRRN-AFPATHE----------EIHPTGMLSVVANLTPYSDHNQ 652
            F+  F+     +  D    N  F A HE          EI P  +L  VA L PY  HNQ
Sbjct: 632  FDD-FLRKGLVEYLDVNEENDTFIALHEHDIVPTTTHLEIEPFTILGAVAGLIPYPHHNQ 690

Query: 653  SPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNA 712
            SPRN YQC M KQ +G        R D  LY    PQ P+V+T T    G D  P G NA
Sbjct: 691  SPRNTYQCAMGKQAIGAIAYNQMNRIDTLLYLSVYPQQPMVKTRTIELIGYDRLPAGQNA 750

Query: 713  IVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGN-KVDR-GQKLFRRNK 770
             VA+++Y+GYD+EDA+ILNK+S+DRG    Q+ +     L    N   DR        N 
Sbjct: 751  TVAIMSYSGYDIEDALILNKASLDRGYGRCQVLRKNATLLRKYPNGTFDRLADAPLDENG 810

Query: 771  DAKSLHSVIDSDGLPYVGQMIHPGEPYC---SIYDKTTNSWRTN-----------SRKGS 816
              +  + ++ +DGLP VG+ + PG+ Y    S  + T N++              S K  
Sbjct: 811  QIQRRYDIVQADGLPGVGERVDPGDIYVNKQSPTNATDNTFTGQAASVPYKNAPLSYKSP 870

Query: 817  ESVFVDYVAV-DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPF 875
                +D V + D  N + L     +  R TR P +GDKFSSRHGQKGVC  +    D+PF
Sbjct: 871  VCGMIDKVMISDTDNDQTL---IKVLIRQTRRPELGDKFSSRHGQKGVCGLIVNQEDLPF 927

Query: 876  SGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGT 935
            +   G+ PD I+NPH FPSRMT+  ++E +A K G L GK    T F  S          
Sbjct: 928  NE-DGIVPDTIMNPHGFPSRMTVGKMIELLAGKAGVLTGKLQYGTAFGGSK--------- 977

Query: 936  DESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYY---------QRLR 986
                  V+++  +L   GF+Y G ++L SG+ G  L   ++ GP+YY         Q+L+
Sbjct: 978  ------VEDMSRILIEHGFSYGGKDMLTSGITGEPLEAYVYFGPIYYQKAILTVYFQKLK 1031

Query: 987  HMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSD 1046
            HMV DK   R+ G    +TRQP +GR R GG+R GEMERD L+ +GA  LL +RL   SD
Sbjct: 1032 HMVMDKMHARARGPRATLTRQPTEGRSREGGLRLGEMERDCLIGYGATQLLLERLMISSD 1091

Query: 1047 YHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYV 1106
                  C  CG +    +                        C  C++SK M T+ +PY 
Sbjct: 1092 KFEVGACQECGLMGYNGW------------------------CTYCKSSKKMATLTIPYA 1127

Query: 1107 FRYLAAELAAMNIKITLQLGDG 1128
             + L  EL AMN+   L L D 
Sbjct: 1128 AKLLFQELMAMNVVPRLVLDDA 1149


>gi|260807868|ref|XP_002598730.1| hypothetical protein BRAFLDRAFT_282817 [Branchiostoma floridae]
 gi|229284004|gb|EEN54742.1| hypothetical protein BRAFLDRAFT_282817 [Branchiostoma floridae]
          Length = 1137

 Score =  394 bits (1012), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 333/1145 (29%), Positives = 505/1145 (44%), Gaps = 161/1145 (14%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
             CR   ++Y+  +  D+E  Y      VVR     G+ P+ML++  C L G    +L  L
Sbjct: 93   ECRLRDMTYSAPITVDIE--YTRGNQRVVRNNLPIGRMPIMLRSSNCVLTGKSPSELAKL 150

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
            KE   + GGYF++ G+E+V   +++ +Q     M+           TD+  +I C     
Sbjct: 151  KECPLDPGGYFLVKGVEKV---ILIQEQLSKNRMIVE---------TDRKGLISCSVTSS 198

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYL--LPVGIVLKALVDTNDLEIFNHLTCCYDEKYK 214
            +       Y++  + +  ++L+   +   +P+ I  KA+   +D EI   +         
Sbjct: 199  THERKTKTYVVQKNAK--YFLKHNTFTEDIPIAIAFKAMGVESDQEIVQLI--------- 247

Query: 215  KEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETV 274
               G     + +  V   L E     + T+ Q L+ IG   +    G    +    A  V
Sbjct: 248  ---GTDARTMAA--VAPSLEECHKAQVFTQKQALRFIGVKVRRSRWGGPKRTRVEEAREV 302

Query: 275  IRDYIFVHLNDNNDKFNL----LIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITI 330
            +   I  H+      F L    L  M++++        V D  D   N+ + L G L+ +
Sbjct: 303  LHSTILAHVPVVKFNFRLKCVYLALMVRRVVQAQAQDRVDDR-DYYGNKRLELAGQLLAL 361

Query: 331  YLKEKLEDWLRKGKKLIQDEI-ENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
              ++  + +  + KK+    I +    +FD      I K M ++   QI   +   + TG
Sbjct: 362  LFEDLFKKFNAELKKIADQTIPKPRAAQFD------IVKHMRQD---QITNGLVNAISTG 412

Query: 390  RLATQT-GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPESWG 447
                +   +D   RAG T    RL+F+  +     +   + F   R  S  R L P  WG
Sbjct: 413  NWTVKRFKMD---RAGVTQVLSRLSFISALGMMTRI--SSQFEKTRKVSGPRSLQPSQWG 467

Query: 448  FLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPK 507
             LCP  TP+GE CGL+ ++     + +         D  +     L   +GV  +  L  
Sbjct: 468  MLCPSDTPEGEACGLVKNLALMTHITT---------DSEEQPIQRLAFNLGVEDVHLLSG 518

Query: 508  LVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSA-----ASVIPDDLEVGYVP 562
               +   + L V+L+G ++GVI   + + ++   R+++ +       S+ P+        
Sbjct: 519  EELNSQDSYL-VMLNGNILGVI--CDHQHLIRSFRKMRRAGYINEFVSICPNHEHRCVNI 575

Query: 563  LSLGGAYPGLYLFTSPPK--------------------FVRP--VRNISLPSEESQNIEL 600
             S  G     Y+  +  +                    F+R   V  + +  E   NI L
Sbjct: 576  ASDAGRVCRPYIIVTNGRPMVTNRHIEELTKGYRAFEDFLREGLVEYLDVNEENDCNITL 635

Query: 601  IGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIH----PTGMLSVVANLTPYSDHNQSPRN 656
               +E    +I   D         F +  +  H    P  +L V A L PY  HNQSPRN
Sbjct: 636  ---YE---ADITREDETTLEHLQCFVSCRDTTHLEIEPFTILGVCAGLIPYPHHNQSPRN 689

Query: 657  MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
             YQC M KQ MG        R D  LY L  PQ P+V+T T      ++ P G NA VAV
Sbjct: 690  TYQCAMGKQAMGAIGYNQHNRIDTLLYLLVFPQRPMVKTKTIELIDYEKLPAGQNATVAV 749

Query: 717  LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR--GQKLFRRNKDAK 773
            ++Y+GYD+EDA+ILNKSSVDRG     +Y+ +   L    N+  DR  G  +    +   
Sbjct: 750  MSYSGYDIEDALILNKSSVDRGFGRCLVYRKQNCTLKRYSNQTFDRVMGPMVDAATRKPI 809

Query: 774  SLHSVIDSDGLPYVGQMIHPGEPYC--SIYDKTTNSWRTNSR-----------KGSESVF 820
              H ++D DG+   G+ +   +     S+  +T N  +T  +           KG    +
Sbjct: 810  WRHEILDVDGICAPGERVQNKQVLVNKSMPKQTMNPVQTPGQQPEYQDVPITYKGPVDSY 869

Query: 821  VDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTG 880
            V+ V V     +    K  +  R TR P IGDKFSSRHGQKGVC  +    DMPF+   G
Sbjct: 870  VETVLVSSNQEEAFLIK--MLLRQTRRPEIGDKFSSRHGQKGVCGLIVNQEDMPFTD-QG 926

Query: 881  MRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKS 940
            + PD+I+NPH FPSRMT+  L+E +A K G L GKF   T F  S               
Sbjct: 927  ICPDIIMNPHGFPSRMTVGKLMELLAGKAGVLEGKFHYGTAFGGSK-------------- 972

Query: 941  LVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGT 1000
             V ++ E L   GFNY G + L SG+ G  L   I+ GPVYYQ+L+HMV DK   R+ G 
Sbjct: 973  -VKDVCEELVQHGFNYQGKDYLTSGITGEPLNAYIYTGPVYYQKLKHMVLDKIHARAKGP 1031

Query: 1001 MDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVL 1060
               +TRQP +GR R GG+R GEMERD L+ +GA+ LL +RL   SD    DVC  CG + 
Sbjct: 1032 RAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDQFEVDVCGECGLLG 1091

Query: 1061 TATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIK 1120
             + +                        C  C++S+ + ++ MPY  + L  EL +MNI 
Sbjct: 1092 YSGW------------------------CQYCKSSRNVSSLKMPYACKLLFQELQSMNIA 1127

Query: 1121 ITLQL 1125
              L+L
Sbjct: 1128 PRLKL 1132


>gi|409075839|gb|EKM76215.1| hypothetical protein AGABI1DRAFT_122788 [Agaricus bisporus var.
            burnettii JB137-S8]
          Length = 1142

 Score =  394 bits (1012), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 332/1213 (27%), Positives = 526/1213 (43%), Gaps = 202/1213 (16%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
            F  ++ LV+ HI+SF+Y +D  L  +                                  
Sbjct: 40   FLKVKGLVKQHIDSFNYFVDVDLKNIVKANNKITSDVDPRFWLKYVDINVGFPDRNEMET 99

Query: 37   --------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGA 88
                     CR    +Y+  ++  +++     G  +V+   N G+ P+ML++ +C L G 
Sbjct: 100  VEKKVTPHECRLRDTTYSAPIIVTIQYT---RGKNIVQRNVNIGRLPIMLRSNKCVLTGR 156

Query: 89   DSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVV 148
               +L  + E   + GGYF++ G E+V   +++ +Q     ++  +  D  +G     V 
Sbjct: 157  TEAQLARMSECPLDPGGYFVVKGTEKV---ILVQEQLSKNRIIVET--DNVKG----VVQ 207

Query: 149  IRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--------LPVGIVLKALVDTNDLE 200
              C       +  K Y             +G+ YL        LP+ I LKAL   +D E
Sbjct: 208  ASCTSSTHGGLKSKTYVATK---------KGRIYLRHNSIHEDLPIVIALKALGVQSDKE 258

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQP--V 258
            I   LT    E YK    A             L +   L + TR Q L++IG   +    
Sbjct: 259  IL-LLTAGNTEAYKIAFSAN------------LEDAAKLGIFTRQQALEYIGTRVKVNRR 305

Query: 259  IDGLQSESYYAVAE---TVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
            + G +  ++    E   T++  ++ V+  D   K   +  M +++   ++  ++ D+ D 
Sbjct: 306  VVGPRRPAWEEALEALATIVLAHVPVNGLDLRPKAIFVATMTRRVLMAMNDENMVDDRDY 365

Query: 316  LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGK--KFDFFNLANIKKVMEKN 373
            + N+ + L G L+ +  ++  + +    K  I   ++   +  +FD +N    +      
Sbjct: 366  VGNKRLELAGQLLALLFEDLFKTYNSNLKSAIDKVLKKPSRTTEFDAYNTMQFQ------ 419

Query: 374  PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
                +       + TG  + +      +RAG T    RL+F+  +     +   + F   
Sbjct: 420  -GDHLTAGFVRAISTGNWSLKRFK--MERAGVTHVLSRLSFISALGMMTRI--SSQFEKT 474

Query: 434  RTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSI 492
            R  S  R L P  WG LCP  TP+GE CGL+ ++     + +  +    I+         
Sbjct: 475  RKVSGPRALQPSQWGVLCPSDTPEGEACGLVKNLALMTHITTDVEEEPIIQ--------- 525

Query: 493  LRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVI 552
            L  ++GV  I  L    +   P    V ++G ++G+I      + V+  R+L+ +     
Sbjct: 526  LAFMLGVEDI-RLATGTEIYGPNTFVVNVNGTIIGLI--RHPMRFVSQFRKLRRARRFS- 581

Query: 553  PDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------RNISLPSEESQNIELIGPFEQ 606
                   +V + +   +  +++ +   +  RP+      R+   P   +   +    F+ 
Sbjct: 582  ------EFVSIYVNHHHRTVHIASDGGRICRPMIIVEHGRSKVTPEHATYLKDGTATFDD 635

Query: 607  VFMEIRCPDGGDGGRRN-AFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPR 655
             F+     +  D    N  + A          TH EI P  +L  VA L PY  HNQSPR
Sbjct: 636  -FLRKGVVEYLDVNEENDTYIALYESDITPHTTHLEIEPFTLLGAVAGLIPYPHHNQSPR 694

Query: 656  NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
            N YQC M KQ +G        R D  LY    PQ P+V+T T    G D+ P G NA VA
Sbjct: 695  NTYQCAMGKQAIGAIGYNQFNRIDTLLYLSVYPQQPMVKTKTIELIGYDKLPAGQNATVA 754

Query: 716  VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR-GQKLFRRNKDAK 773
            V++Y+GYD+EDA+ILNK+S+DRG    Q+ +     +    N   DR        N    
Sbjct: 755  VMSYSGYDIEDALILNKASLDRGYGRCQVLRKNATLIRKYPNGTYDRLADAPVDENGMTA 814

Query: 774  SLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESV-------------- 819
              + +I  DGL  VG+ + PG+ Y +    T  S   NS  G  +               
Sbjct: 815  KRYDIIQPDGLAGVGERVDPGDIYVNKQSPTNAS--DNSFTGQAASVPYKNTPLTYKSPV 872

Query: 820  --FVDYVAV-DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS 876
              ++D V V D +N + L +   +  R TR P +GDKFSSRHGQKGVC  +    DMPF+
Sbjct: 873  AGYIDKVMVTDTENEQTLIK---VLIRQTRRPELGDKFSSRHGQKGVCGLIVNQEDMPFN 929

Query: 877  GVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTD 936
               G+ PD I+NPH FPSRMT+  ++E +A K G L GK    T F  S           
Sbjct: 930  D-QGINPDTIMNPHGFPSRMTVGKMIELLAGKAGVLTGKLQYGTAFGGSK---------- 978

Query: 937  ESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVR 996
                 V+++  +L   GF+Y G ++L SG+ G  L   ++ GP+YYQ+L+HMV DK   R
Sbjct: 979  -----VEDMSRILIENGFSYAGKDMLTSGITGEPLEAYVYFGPIYYQKLKHMVMDKMHAR 1033

Query: 997  STGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLC 1056
            + G    +TRQP +GR R GG+R GEMERD L+ +GA  LL +RL   SD    + C  C
Sbjct: 1034 ARGPRATLTRQPTEGRSREGGLRLGEMERDCLIGYGATQLLLERLMISSDIFEVNACQEC 1093

Query: 1057 GSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAA 1116
            G +    +                        C  C++SK M ++ +PY  + L  EL A
Sbjct: 1094 GLMGYNGW------------------------CTYCKSSKKMASLTIPYAAKLLFQELMA 1129

Query: 1117 MNIKITLQLGDGA 1129
            MN+   L L D +
Sbjct: 1130 MNVVPRLILDDAS 1142


>gi|410907712|ref|XP_003967335.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like
            [Takifugu rubripes]
          Length = 1132

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 328/1140 (28%), Positives = 517/1140 (45%), Gaps = 164/1140 (14%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
             CR   ++Y+  +  D+E  Y      ++R     G+ P+ML++  C L G    +   L
Sbjct: 101  ECRLRDMTYSAPITVDIE--YTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPMEFAKL 158

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC-VRKD 155
             E   + GGYFI+ G E+V   +++ +Q   +S  R      R+G    +V      +K 
Sbjct: 159  NECPLDPGGYFIVKGQEKV---ILIQEQ---LSKNRIIVDQDRKGAVGASVTSSTHEKKS 212

Query: 156  QSSVTLKLYYLLNGSVRLGFWLQGKEYL--------LPVGIVLKALVDTNDLEIFNHLTC 207
            ++++ +K               QG+ YL         P+ I+ K +   +D EI   +  
Sbjct: 213  RTNMIVK---------------QGRFYLRHNTLSEDAPIAIIFKGMGVESDQEIVQMIG- 256

Query: 208  CYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ-PVIDGLQSES 266
               E Y           V       L E Q   + T+ Q L+++G   +   + G   ++
Sbjct: 257  --TEDY-----------VMASFAPSLEECQKAQIFTQTQALRYLGNKVRRQRMWGGPKKT 303

Query: 267  YYAVAETVIRDYIFVHLNDNNDKFN----LLIFMLQKLFSLVDHTSVSDNPDSLQNQEIL 322
                A  ++   I  H+      F      L  M++++  L    +  D+ D   N+ + 
Sbjct: 304  KMEEARELLASLILTHVPVKEFNFRAKCIYLAVMVRRVI-LAQGGNKVDDRDYYGNKRLE 362

Query: 323  LPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSI 382
            L G L+++  ++  + +  + KK I D+I    +   F    ++ K M ++   QI   +
Sbjct: 363  LAGQLLSLLFEDLFKKFNSELKK-IADQIIPKQRAAQF----DVVKHMRQD---QITNGM 414

Query: 383  ETMLKTGRLATQT-GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRK 440
               + TG  + +   +D   R G T    RL+F+  +     +   + F   R  S  R 
Sbjct: 415  VNAISTGNWSLKRFKMD---RQGVTQVLSRLSFISALGMMTRI--SSQFEKTRKVSGPRS 469

Query: 441  LLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVG 500
            L P  WG LCP  TP+GE CGL+ ++     + +  +    I+    +    + +L G  
Sbjct: 470  LQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLAFNLGVEDVNLLCGEE 529

Query: 501  MIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGY 560
            +            P+V  V L+G ++GVI   + +K+V   R ++   A  I +     +
Sbjct: 530  L----------SYPSVFIVFLNGNILGVI--RDHQKLVGTFRLMR--RAGFINE-----F 570

Query: 561  VPLSLGGAYPGLYLFTSPPKFVRP--VRNISLPSEESQNIELIGP----FEQVFMEIRCP 614
            V +S       +Y+ +   +  RP  +     P  ++++IE +      FE  F+     
Sbjct: 571  VSISTNLTDRCVYISSDGGRLCRPYIIVKKGQPMVKNKHIEDLSQGYRNFED-FLHDGLV 629

Query: 615  DGGDGGRRNAFP-----------ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMA 663
            +  D    N               TH EI P  +L V A L PY  HNQSPRN YQC M 
Sbjct: 630  EYLDVNEENDCQIALYEHMIHKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMG 689

Query: 664  KQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYD 723
            KQ MG      + R D  +Y L  PQ P+V+T T      ++ P G NA VAV++Y+GYD
Sbjct: 690  KQAMGTIGYNQRNRIDTLMYLLAYPQRPMVKTKTIEIIEFEKLPAGQNATVAVMSYSGYD 749

Query: 724  MEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR--GQKLFRRNKDAKSLHSVID 780
            +EDA+ILNK+S+DRG     +Y+     L    N+  D+  G  L    +     H+++D
Sbjct: 750  IEDALILNKASLDRGFGRCLVYKNSKCTLRRYTNQTFDKVMGPMLDAATRKPIWRHNILD 809

Query: 781  SDGLPYVGQ-------MIHPGEPYCSI--YDKTTNSWRTNSR------KGSESVFVDYVA 825
            +DG+   G+       +++   P  +    + +T + +   R      KGS   +++ V 
Sbjct: 810  ADGICSPGERVENKQVLVNKSMPTVTQTPLEGSTQTGQPQYRDVPICYKGSTDSYIEKVM 869

Query: 826  VDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDL 885
            +          K  I  R TR P IGDKFSSRHGQKGVC  + P  DMPF   TG+ PD+
Sbjct: 870  ISSNAEDAFLIK--ILLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCD-TGICPDI 926

Query: 886  IINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDEL 945
            I+NPH +PSRMT+  L+E +A K G L G+F   T F  S                V ++
Sbjct: 927  IMNPHGYPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSK---------------VKDV 971

Query: 946  GEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQIT 1005
             E L   G+NY G + + SG+ G  L   I+ GPVYYQ+L+HMV DK   R+ G    +T
Sbjct: 972  CEDLIRHGYNYQGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLT 1031

Query: 1006 RQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFI 1065
            RQP +GR R GG+R GEMERD L+ +GA+ LL +RL   SD    DVC  CG +  + + 
Sbjct: 1032 RQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLGYSGW- 1090

Query: 1066 HPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
                                   CH C++S  + ++ +PY  + L  EL +MNI   L+L
Sbjct: 1091 -----------------------CHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLKL 1127


>gi|426193713|gb|EKV43646.1| hypothetical protein AGABI2DRAFT_188003 [Agaricus bisporus var.
            bisporus H97]
          Length = 1142

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 331/1213 (27%), Positives = 526/1213 (43%), Gaps = 202/1213 (16%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
            F  ++ LV+ HI+SF+Y +D  L  +                                  
Sbjct: 40   FLKVKGLVKQHIDSFNYFVDVDLKNIVKANNKITSDVDPRFWLKYVDINVGFPDRNEMET 99

Query: 37   --------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGA 88
                     CR    +Y+  ++  +++     G  +V+   N G+ P+ML++ +C L G 
Sbjct: 100  VEKKVTPHECRLRDTTYSAPIIVTIQYT---RGKNIVQRNVNIGRLPIMLRSNKCVLTGR 156

Query: 89   DSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVV 148
               +L  + E   + GGYF++ G E+V   +++ +Q     ++  +  D  +G     V 
Sbjct: 157  TEAQLARMSECPLDPGGYFVVKGTEKV---ILVQEQLSKNRIIVET--DNVKG----VVQ 207

Query: 149  IRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--------LPVGIVLKALVDTNDLE 200
              C       +  K Y             +G+ YL        LP+ I LKAL   +D E
Sbjct: 208  ASCTSSTHGGLKSKTYVATK---------KGRIYLRHNSIHEDLPIVIALKALGVQSDKE 258

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQP--V 258
            I   LT    E YK    A             L +   L + TR Q L++IG   +    
Sbjct: 259  IL-LLTAGNTEAYKIAFSAN------------LEDAAKLGIFTRQQALEYIGTRVKVNRR 305

Query: 259  IDGLQSESYYAVAE---TVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
            + G +  ++    E   T++  ++ V+  D   K   +  M +++   ++  ++ D+ D 
Sbjct: 306  VVGPRRPAWEEALEALATIVLAHVPVNGLDLRPKAIFVATMTRRVLMAMNDENMVDDRDY 365

Query: 316  LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGK--KFDFFNLANIKKVMEKN 373
            + N+ + L G L+ +  ++  + +    K  I   ++   +  +FD +N    +      
Sbjct: 366  VGNKRLELAGQLLALLFEDLFKTYNSNLKSAIDKVLKKPSRTTEFDAYNTMQFQ------ 419

Query: 374  PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
                +       + TG  + +      +RAG T    RL+F+  +     +   + F   
Sbjct: 420  -GDHLTAGFVRAISTGNWSLKRFK--MERAGVTHVLSRLSFISALGMMTRI--SSQFEKT 474

Query: 434  RTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSI 492
            R  S  R L P  WG LCP  TP+GE CGL+ ++     + +  +    I+         
Sbjct: 475  RKVSGPRALQPSQWGVLCPSDTPEGEACGLVKNLALMTHITTDVEEEPIIQ--------- 525

Query: 493  LRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVI 552
            L  ++GV  I  L    +   P    V ++G ++G+  +    + V+  R+L+ +     
Sbjct: 526  LAFMLGVEDI-RLATGTEIYGPNTFVVNVNGTIIGL--TRHPMRFVSQFRKLRRARRFS- 581

Query: 553  PDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------RNISLPSEESQNIELIGPFEQ 606
                   +V + +   +  +++ +   +  RP+      R+   P   +   +    F+ 
Sbjct: 582  ------EFVSIYVNHHHRTVHIASDGGRICRPMIIVEHGRSKVTPEHATHLKDGTATFDD 635

Query: 607  VFMEIRCPDGGDGGRRN-AFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPR 655
             F+     +  D    N  + A          TH EI P  +L  VA L PY  HNQSPR
Sbjct: 636  -FLRKGVVEYLDVNEENDTYIALYESDITPHTTHLEIEPFTLLGAVAGLIPYPHHNQSPR 694

Query: 656  NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
            N YQC M KQ +G        R D  LY    PQ P+V+T T    G D+ P G NA VA
Sbjct: 695  NTYQCAMGKQAIGAIGYNQFNRIDTLLYLSVYPQQPMVKTKTIELIGYDKLPAGQNATVA 754

Query: 716  VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR-GQKLFRRNKDAK 773
            V++Y+GYD+EDA+ILNK+S+DRG    Q+ +     +    N   DR        N    
Sbjct: 755  VMSYSGYDIEDALILNKASLDRGYGRCQVLRKNATLIRKYPNGTYDRLADAPIDENGMTA 814

Query: 774  SLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESV-------------- 819
              + +I  DGL  VG+ + PG+ Y +    T  S   NS  G  +               
Sbjct: 815  KRYDIIQPDGLAGVGERVDPGDIYVNKQSPTNAS--DNSFTGQAASVPYKNTPLTYKSPV 872

Query: 820  --FVDYVAV-DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS 876
              ++D V V D +N + L +   +  R TR P +GDKFSSRHGQKGVC  +    DMPF+
Sbjct: 873  AGYIDKVMVTDTENEQTLIK---VLIRQTRRPELGDKFSSRHGQKGVCGLIVNQEDMPFN 929

Query: 877  GVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTD 936
               G+ PD I+NPH FPSRMT+  ++E +A K G L GK    T F  S           
Sbjct: 930  D-QGINPDTIMNPHGFPSRMTVGKMIELLAGKAGVLTGKLQYGTAFGGSK---------- 978

Query: 937  ESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVR 996
                 V+++  +L   GF+Y G ++L SG+ G  L   ++ GP+YYQ+L+HMV DK   R
Sbjct: 979  -----VEDMSRILIENGFSYAGKDMLTSGITGEPLEAYVYFGPIYYQKLKHMVMDKMHAR 1033

Query: 997  STGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLC 1056
            + G    +TRQP +GR R GG+R GEMERD L+ +GA  LL +RL   SD    + C  C
Sbjct: 1034 ARGPRATLTRQPTEGRSREGGLRLGEMERDCLIGYGATQLLLERLMISSDIFEVNACQEC 1093

Query: 1057 GSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAA 1116
            G +    +                        C  C++SK M ++ +PY  + L  EL A
Sbjct: 1094 GLMGYNGW------------------------CTYCKSSKKMASLTIPYAAKLLFQELMA 1129

Query: 1117 MNIKITLQLGDGA 1129
            MN+   L L D +
Sbjct: 1130 MNVVPRLILDDAS 1142


>gi|307204008|gb|EFN82912.1| DNA-directed RNA polymerase III subunit RPC2 [Harpegnathos saltator]
          Length = 1081

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 332/1153 (28%), Positives = 525/1153 (45%), Gaps = 162/1153 (14%)

Query: 23   FDYMLDEGLSEMFDH-CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTR 81
            FD  L++ + +++ H CR   ++Y   ++ D+E  Y+    P+++     G+ P+ML++ 
Sbjct: 28   FDESLND-IRKLYPHECRLRDLTYAAPIIVDIE--YIRGNQPIIKNNIVIGRMPIMLRSA 84

Query: 82   RCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSF---RDR 138
             C L G  + +L +  E   + GGYFI+ G E+V   +++ +Q     MVR+     +D 
Sbjct: 85   NCRLTGLTAHELSTKDECPHDPGGYFIIKGQEKV---ILIQEQ-----MVRNRILLEKDN 136

Query: 139  REGYTDKAVVIRCVRKDQSSVTLK--LYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDT 196
            +E            RK ++S+  K   YY+ +   +           + V IV KA+   
Sbjct: 137  KENIVAYCNSSTHERKTKTSIIGKSGRYYMKHNIFQDD---------ILVTIVFKAMGIH 187

Query: 197  NDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIG-EHF 255
             D  I   +   ++ + K E                L E  DL++ T+ Q L ++  +  
Sbjct: 188  TDQNIVMLIGTEHEFQSKLEWS--------------LRECHDLNIFTQNQALMYLNSKRT 233

Query: 256  QPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNL----LIFMLQKLFSLVDHTSVSD 311
            QP +            + V+   +  H+   N  F L    L FM++K+     +  + D
Sbjct: 234  QPRVFNANE------MKDVLATNVLSHVPVKNFSFKLKGIHLAFMVRKVIMAQSNKKLLD 287

Query: 312  NPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIEN-NGKKFDFFNLANIKKVM 370
            + D + N+ + + G L+++  ++  + +  + K++    I      +FD      I K M
Sbjct: 288  DRDFVGNKRLEVAGSLLSLMFEDLFKRFNWELKQIADKNIPKIKAAQFD------IVKHM 341

Query: 371  EKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASF 430
             ++   QI   +   + TG    +      +R G T    RL+++  +     VH  + F
Sbjct: 342  RQD---QITNGLLFAISTGNWKIKRFK--MERQGATQVLSRLSYISALGMMTRVH--SQF 394

Query: 431  AGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMR 489
               R  S  R L    WG LCP  TP+GE CGL+ ++     + +         D  +  
Sbjct: 395  EKTRQVSGPRSLHLSQWGMLCPCDTPEGESCGLVKNLALMAHITT---------DEPEDH 445

Query: 490  TSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK---- 545
             + L   + +  I SL     +     L VLL+G + GV  +S  +K+V  L+ L+    
Sbjct: 446  IAWLLSTLDMQEIQSLGSQEINHKDEWL-VLLNGVIQGV--TSHYKKLVHTLKTLRRRGY 502

Query: 546  -VSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPF 604
              S  S+   D        + GG     Y      + V    ++ L  ++      I  F
Sbjct: 503  ISSFVSIYMQDNHRCVHISTDGGRLCRPYFIVENGRLVVTAEHMKLFQQK------ILKF 556

Query: 605  EQVFMEIRCPDGGDGGRRNAF-----------PATHEEIHPTGMLSVVANLTPYSDHNQS 653
            E  F++    +  D    N               TH EI    +L V A L PY  HNQS
Sbjct: 557  ED-FLQTGMIEYLDVNEENDVLIALDENEIQAETTHMEIETFTILGVCAGLIPYPHHNQS 615

Query: 654  PRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAI 713
            PRN YQC M +Q  G      + R D  +Y+L  PQ PIVRT T      +E P G NAI
Sbjct: 616  PRNTYQCAMGRQAAGTIGYNQRKRMDTVMYNLVYPQAPIVRTKTSEMIKYNELPAGENAI 675

Query: 714  VAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR--GQKLFRRNK 770
            VA+++Y GYD+EDA+++N++S+DRG     IY++    L    N+  DR  G  L     
Sbjct: 676  VAIMSYGGYDIEDALVVNRASLDRGYGRCLIYRSTKAVLKRYPNQTYDRIMGPSLDSNTN 735

Query: 771  DAKSLHSVIDSDGLPYVGQMIH----------PGEPYCSIYDKTTNSWRTNSR------K 814
                 H ++D+DG+   G+ +           P +    +   +  S +T  R      K
Sbjct: 736  KVAWKHDILDADGIAMPGERVEDKKVLVNKSVPSQSIDRVNTGSDASPKTQYRDAEIYYK 795

Query: 815  GSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMP 874
            G E  +V+   +      +   K  +  R TR P IGDK SSRHGQKGV   +    D+P
Sbjct: 796  GLEPAYVEQSLLTSNADDSFLIK--LLLRQTRRPEIGDKLSSRHGQKGVIGSIVNPEDLP 853

Query: 875  FSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTG 934
            F+   G+ PD+I+NPH FPSRMT+  L+E +A K G L+G+F D+T F  S         
Sbjct: 854  FND-QGIVPDIIMNPHGFPSRMTVGKLIEILAGKVGILNGEFHDSTAFGGSK-------- 904

Query: 935  TDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQ 994
                   VD+L E ++  G+NY G +  YSG+ G  +   I+ G VYYQRL+HMV DK  
Sbjct: 905  -------VDDLSEQMQKHGYNYLGKDCFYSGITGEPMEAYIYTGTVYYQRLKHMVQDKIH 957

Query: 995  VRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCS 1054
             R+ G    +TRQP +GR + GG+RFGEMERD L+A+GA+ +L +RL   SD    DVC+
Sbjct: 958  ARAKGPRVVMTRQPTEGRSKDGGLRFGEMERDCLVAYGASMMLIERLMLSSDGVKVDVCN 1017

Query: 1055 LCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAEL 1114
             CG +  + +                        C +C+++  + +V MPY  + L  EL
Sbjct: 1018 SCGLMGYSGW------------------------CQSCRSNSNISSVTMPYACKLLLHEL 1053

Query: 1115 AAMNIKITLQLGD 1127
             +MNI   L+L D
Sbjct: 1054 QSMNIVPRLKLRD 1066


>gi|242006406|ref|XP_002424041.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
            putative [Pediculus humanus corporis]
 gi|212507347|gb|EEB11303.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
            putative [Pediculus humanus corporis]
          Length = 1137

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 322/1143 (28%), Positives = 536/1143 (46%), Gaps = 167/1143 (14%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
             CR   ++Y+  +   +E  Y      ++++    G+ P+ML++  C L G D  +L  L
Sbjct: 102  ECRLRDMTYSAPITVTIE--YTRGNERIIKKDLIIGRIPIMLQSANCVLYGKDEYELSKL 159

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
             E   + GGYFI+ G ERV   +++ +Q    S+V    +D +       +     +K +
Sbjct: 160  NECPLDPGGYFIVKGQERV---ILIREQLLKNSLVVE--KDSKGNPCAHVMSSTHEKKSK 214

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYL--LPVGIVLKALVDTNDLEIFNHLTCCYDEKYK 214
            +++ +K         +  F+L+   +   +P+ ++ K     +D+E F  ++   +++Y 
Sbjct: 215  TNIIIK---------KDKFYLRHNAFSDDIPLAVIYKGFGVESDIEFF--MSVGIEQEY- 262

Query: 215  KEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID----GLQSESYYAV 270
                        E++   + E   L++ T+ Q L++IG   +        G + ++    
Sbjct: 263  -----------HEKLIPSMEECHKLNICTQTQALRYIGNKTKVKRSLPGSGGKPKNVVDD 311

Query: 271  AETVIRDYIFVHLNDNN-----DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPG 325
            A  ++ + I  H++  +     +K   L  M++++           + D   N+ + L G
Sbjct: 312  AGDILANTILAHVDVLDFRCMCEKTQYLGLMVRRILQAETDPRFYTDLDHYGNKRLELAG 371

Query: 326  HLITIYLKEKLEDWLRKGK---KLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSI 382
             ++ +      ED+L++     K+I D++    K   F  + ++++    N      ++ 
Sbjct: 372  AMLGLLF----EDFLKRYNLELKMIADKMIPKIKAAQFDIVKHLRQDFITNGFSNAISTG 427

Query: 383  ETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHR-GASFAGLRTTS-VRK 440
               +K  R+ TQ         G T   + L+ L +IS F  + R  + F   R  S  R 
Sbjct: 428  NWTIKRFRMHTQ---------GVT---QVLSRLSYISAFGMMTRVNSHFEKTRKVSGPRS 475

Query: 441  LLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVG 500
            L    WG LCP  TP+GE CGL+ ++   C +++   S   I+  +++           G
Sbjct: 476  LHATQWGMLCPSDTPEGEACGLVKNLALMCHISTL-SSELPIKQIAQL----------CG 524

Query: 501  MIPSLP-KLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVG 559
            +IP +   + +   P    V L+G ++G+  + E +K+   LR+++ S   + P      
Sbjct: 525  IIPPMRMNMEQILAPDTFMVFLNGSLLGI--TYEPKKLCKKLRKIRRSG-KLNP------ 575

Query: 560  YVPLSLGGAYPGLYLFTSPPKFVRP---VRN-ISLPSEESQNIELIGPFEQV--FMEIRC 613
            +V +SL   +  +Y+F+   +  RP   + N + L ++   N +L   F++   F++   
Sbjct: 576  FVSISLHALHRTVYIFSDSGRLCRPYIIIENGVPLITKSDLN-DLERKFKKFIDFLDDGV 634

Query: 614  PDGGDGGRRN-----------AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQM 662
             +  D    N               TH EI P  +L V A++ PY  +NQSPRN YQC M
Sbjct: 635  IEYMDVNEENDSLIALYEKDITPKHTHLEIAPFTLLGVCASIIPYPHNNQSPRNTYQCAM 694

Query: 663  AKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGY 722
             KQ MG      + R D  LY++   Q P+V T        D+ P G NAIV V++Y+GY
Sbjct: 695  GKQAMGAIGYNQENRIDTLLYNMVYTQKPMVITKPMVMVNYDKLPAGQNAIVCVMSYSGY 754

Query: 723  DMEDAMILNKSSVDRGMCHGQIYQTETIDLS--DDGNKVDRGQKLFRRNKDAKSL--HSV 778
            D+EDA+I+NK+S++RG    Q+++     L    DG   DR Q      +  K L  H V
Sbjct: 755  DIEDALIINKASLERGYGRCQVFRNTKCVLKRYADGTS-DRIQGPLVDAETRKPLWKHGV 813

Query: 779  IDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR----------------KGSESVFVD 822
            +D+DG+   G+ I   +    + +K+  S    S                 KG E  ++D
Sbjct: 814  LDTDGIGAPGEKILNRQ---VLINKSVPSRSNTSNVPIFGERDYIDTPVDYKGLEHSYID 870

Query: 823  YVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMR 882
             V +   +  +   K  I+ R TR P IGDKFSSRHGQKGV   +    +MPF+  +G+ 
Sbjct: 871  KVLISTNSDDDSLIK--IKLRQTRIPEIGDKFSSRHGQKGVVGLIVEQENMPFNE-SGIC 927

Query: 883  PDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLV 942
            PD+I+NPH FPSRMT+  L+E +A K G + GK    T F  S                V
Sbjct: 928  PDVIMNPHGFPSRMTVGKLIELLAGKAGVVTGKHHYGTAFGGST---------------V 972

Query: 943  DELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMD 1002
             E+ E L    FNY G ++LYSG+ G  +   ++ GPV+YQRL+HMV DK   R+ G   
Sbjct: 973  SEVQEELVKNKFNYEGKDILYSGITGEPMEVYVYSGPVFYQRLKHMVQDKIHARARGPRA 1032

Query: 1003 QITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTA 1062
             +TRQP +GR   GG+R GEMERD L+A+GA+ ++ +RL   SD    DVC+ CG +  +
Sbjct: 1033 VLTRQPTEGRAADGGLRLGEMERDCLIAYGASSMISERLMISSDAFQCDVCNECGLIAYS 1092

Query: 1063 TFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKIT 1122
             +                        CH C++SK + T+ +PY  + L  EL +MNI   
Sbjct: 1093 KW------------------------CHGCKSSKEISTIKLPYATKLLFQELRSMNIVPR 1128

Query: 1123 LQL 1125
            L L
Sbjct: 1129 LSL 1131


>gi|305663643|ref|YP_003859931.1| DNA-directed RNA polymerase subunit B [Ignisphaera aggregans DSM
            17230]
 gi|304378212|gb|ADM28051.1| DNA-directed RNA polymerase subunit B [Ignisphaera aggregans DSM
            17230]
          Length = 1150

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 345/1179 (29%), Positives = 540/1179 (45%), Gaps = 198/1179 (16%)

Query: 19   HIESFDYMLDEGLSEMFDHCRQAKISYTGKL-MADVEFQYLDAGSPVVRERFNFGQFPVM 77
             ++  D  ++  ++ M   CR   I+Y+  + +  V ++    G+PV       G+ P+M
Sbjct: 93   QVKEIDGSINRNITPM--ECRHRDITYSVPIYITLVPYENDVPGNPV---EVLIGEIPLM 147

Query: 78   LKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRD 137
            +K+ +  L    S++L+ + E+  + GGYFI++G ER+    I+ +++   + V   +  
Sbjct: 148  VKSSKDPLSKMTSEELIKIGEDPKDPGGYFIIDGTERI----IVAQEDLASNRVIVDYGQ 203

Query: 138  RREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGF-WLQGKEYLLPVGIVLKALVDT 196
                 T  A VI      +  V +  +   +G++ + F  + GK   +P  ++++AL   
Sbjct: 204  EGLNITHTAKVISSTIGYRVPVIMDRHK--DGTLHVSFPAVPGK---IPFVVLMRALGLE 258

Query: 197  NDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ 256
             D +I   +   +D   + E              ++ + VQ   + T    L +IG    
Sbjct: 259  RDFDI--AIAVSFDPVIQNE--------------LLPSFVQASDIATVEDALDYIGSR-- 300

Query: 257  PVIDGLQSESYYAVAETVIRDYIFVHLNDN-NDKFNLLIFMLQ---KLFSLVDHTSVSDN 312
             +  G   ES    A+ V+  Y   HL     D+    +F+ Q   KL   V      D+
Sbjct: 301  -IAIGQARESRIERAKYVLDKYFLPHLGSKPEDRLRKALFLGQMACKLIEFVLGYRPVDD 359

Query: 313  PDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEK 372
             D   N+ I L G ++ +  +   + +LR     ++ ++E    K    N+A        
Sbjct: 360  KDHYANKRIKLAGEMLALLFRVAFKAFLRD----LRYQLERAKIKERRLNIA-------- 407

Query: 373  NPSKQIGTSIETMLKTGRL--ATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASF 430
                     I + + T R+  A  TG  +  R G +   +R N++  IS  R      S 
Sbjct: 408  -------LYIRSDVITERIKHAMATGTWIGGRTGVSQILDRTNWISSISHMRRTLSPLSR 460

Query: 431  AGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRT 490
            +     + R L    +G LCP  TP+G  CGL+ ++     ++   D             
Sbjct: 461  SQPHFEA-RDLHGTQFGRLCPFETPEGPNCGLVKNLALMATISVGEDEH----------- 508

Query: 491  SILRVLIGVGMIPSLP--KLVKSGP------PAVLSVLLDGRVVGVIPSSEIEKVVAHLR 542
             + ++L   G IP L   + V++G            V L+G ++G  P+ +  ++V  LR
Sbjct: 509  LVEKILYDKGTIPILVLFEKVRNGELSYEDIKTWSKVYLNGTLIGYHPNGK--ELVEKLR 566

Query: 543  RLKVSAASVIPDDLEVGYVPLSLGGAY------PGLYLFTSPPKFVRPVR-----NISLP 591
             +K             G +   +G AY        +Y+ T   + +RP+       + + 
Sbjct: 567  DMK-----------HRGELSYEVGIAYYRTKYINEVYVNTDSGRILRPLMVVENGKLKIT 615

Query: 592  SE----------------ESQNIELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIH 633
             E                +   IEL+ P E+    + I   D G          TH EI 
Sbjct: 616  KEVIDKVKKGMMTFEDLVKKGYIELLDPEEEENALVAINPEDIGK-------ETTHVEIW 668

Query: 634  PTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIV 693
            P  M+ V A+  PY++HNQSPRN YQ  MAKQ +GF +     R D + + L  PQ P+V
Sbjct: 669  PPAMMGVAASTIPYAEHNQSPRNAYQSAMAKQALGFYMANFILRTDTRAHILHYPQIPLV 728

Query: 694  RTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG---QIYQTETI 750
            +T   +  G ++ P+G N +VAV++YTGY+MEDA+I+NKSSVDRG+      ++Y TE +
Sbjct: 729  QTRALSIIGYNDRPSGQNMVVAVMSYTGYNMEDALIMNKSSVDRGLARSNFFRLYSTEEL 788

Query: 751  DLS---DDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNS 807
              +   +D  ++   + L  R K++   ++ +D DG+  V   +  GE   ++  KT+  
Sbjct: 789  KYAGGQEDRIEIPDPKVLGYRGKES---YTKLDEDGIAKVEVQVKGGE---ALIGKTSPP 842

Query: 808  WRTNSRKG-----------------SESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPII 850
                  KG                  E  +VD  AV + +S    +   +R R  R P I
Sbjct: 843  RFVEEYKGYGILAQRRKDSSVTVRHGEIGWVD--AVFITSSLEGHRLIKVRVRDLRIPEI 900

Query: 851  GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGG 910
            GDKF+SRHGQKGV   L P  DMP++   G+ PDLIINPHA PSRMT+  L+ES+A K  
Sbjct: 901  GDKFASRHGQKGVIGALIPQYDMPYTP-DGITPDLIINPHALPSRMTLGQLMESIAGKVA 959

Query: 911  SLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTE 970
            +L GK +D TPF                +  +DEL   L   G+   G E +Y G  G  
Sbjct: 960  ALRGKNVDGTPFF---------------EENIDELKRQLLMFGYPMDGTEPMYDGRTGEL 1004

Query: 971  LTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLA 1030
            +   IFIG VYYQ+L HMVSDK   RS G +  +TRQP +GR R GG+RFGEMERD+++ 
Sbjct: 1005 IGNPIFIGIVYYQKLHHMVSDKMHARSKGPVQLLTRQPTEGRAREGGLRFGEMERDAIIG 1064

Query: 1031 HGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFI--HPQKRAIREIGGLPPARAPKKVT 1088
            HGAA LL +R+   SD  +  VC LCG      FI  + +K+ I E     P    K V 
Sbjct: 1065 HGAAALLRERMVESSDKTIVYVCELCG------FIGWYNRKKEIYEC----PIHGDKGV- 1113

Query: 1089 CHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
                     +  + +PY F+ L  EL +M IK  L LGD
Sbjct: 1114 ---------LHPIVIPYAFKLLLQELMSMGIKPRLLLGD 1143


>gi|325182727|emb|CCA17182.1| PREDICTED: polymerase (RNA) III (DNA directed) polypeptide B isoform
            2 putative [Albugo laibachii Nc14]
          Length = 1177

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 364/1253 (29%), Positives = 531/1253 (42%), Gaps = 258/1253 (20%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEF--QYLDA--GSPV 64
            F  LR LV+ HI+SFDY     L ++      AK +   +  AD +F  QY D   G+P 
Sbjct: 44   FLQLRGLVKQHIDSFDYFTATELKKIV----HAKANNVVRSDADPKFFLQYTDIQIGNPS 99

Query: 65   VRE----------------------------------------RFNFGQFPVMLKTRRCH 84
            + E                                        +   G+ P+ML++  C 
Sbjct: 100  IEEDAFVSSTVTPHQCRLRDRTYAAPVYVSVKYRRGPKIVTNNKVLIGRIPIMLRSANCV 159

Query: 85   LQGADSQKLVSLKEEAAEMGGYFILNGLERVF--------RSVIL---PKQNYPMSMVRS 133
            L G +  +L +LKE   + GGYFI+ G+E+V           VIL   PKQN   S+  S
Sbjct: 160  LTGKNHTQLAALKECPYDPGGYFIVKGVEKVVLIHEQLSKNRVILELDPKQNICASITSS 219

Query: 134  SFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKAL 193
            +                  RK ++++ LK      G + L     G +  +P+  +L+ +
Sbjct: 220  THE----------------RKSRTNIFLK-----GGRIYLKSNSFGSD--IPIIAILRGM 256

Query: 194  VDTNDLEIFNHLTCCYDEKYKKEKGAVGS-PLVSERVKIILAEVQDLSLTTRLQCLQHIG 252
               +D EI +                +GS P + + +     +V +L L T+LQ L++IG
Sbjct: 257  GMEHDQEIID---------------LIGSEPNIMDALLASFEQVSELKLFTQLQALEYIG 301

Query: 253  EHFQPVIDGL---------QSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKL--- 300
                    G          Q  +    A   + + +  H+    D+F L    +  +   
Sbjct: 302  SKMTSQSRGKANSRNGGASQPTNIAETARAALANLVLNHVPCEIDQFRLKCVYIAHIVRR 361

Query: 301  --FSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKF 358
              F+  D T + D+ D   N+ + L G L+++ L E L        K   D I +   + 
Sbjct: 362  IIFTDRDRTRL-DDKDYYGNKRLELAGQLLSL-LFEDLFKRFNSDLKRQADMILSKPNRA 419

Query: 359  DFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFI 418
              F++    +      +  I       L TG    +       RAG T    RL+++  +
Sbjct: 420  SMFDIVKCIR------TDTITQGFIHALATGNWTLKRFR--MDRAGVTHVLSRLSYMSAL 471

Query: 419  SFFRAVHRGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYD 477
                 +   + F   R  S  R L P  WG LCP  TP+GE CGL+ ++   C V S  +
Sbjct: 472  GMMTRI--SSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNLALLCHVTSDEE 529

Query: 478  SRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPP----AVLSVLLDGRVVGVIPSSE 533
            S             I R+   +G+       + SG      +   ++L+G ++G     +
Sbjct: 530  S-----------DPIRRLCFDLGVTDVC---LCSGEALNHRSNYLIMLNGIIIGT--HGD 573

Query: 534  IEKVVAHLRRLKVSA-----ASVIPDDLE-VGYVPLSLGGAYPGLYLFTSPPKFVRPVRN 587
                V  LRR++ +       SV+  D++ V Y+    G     L L    PK  RP   
Sbjct: 574  PRMFVTKLRRIRRAGLIGEFVSVMIHDVQRVVYIASDGGRVCRPLLLID--PKTHRP--- 628

Query: 588  ISLPSEESQNIEL-IGPFEQVFMEIRCPDGGDGGRRN-----------AFPATHEEIHPT 635
              L S + + ++  +     + +E  C +  D    N               TH EI P 
Sbjct: 629  -KLSSRQMRELQAHVRTLHSLIVE-GCVEYVDVNEENNCLIALHEDDITVRTTHLEIDPV 686

Query: 636  GMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRT 695
             +L VV+ L PY  HNQSPRN YQC M KQ +G        R D  LY L  P  P+V++
Sbjct: 687  TILGVVSALIPYPHHNQSPRNTYQCAMGKQAIGTIAMNQFERIDTLLYTLVYPHMPMVKS 746

Query: 696  NTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD 755
                    D  P G NAIVAV++Y+GYD+EDA++LNK+S+DRG     +++     +   
Sbjct: 747  RVLDLVNFDHVPAGQNAIVAVMSYSGYDIEDAIVLNKASLDRGFGRCTVFRKLQAMVKKY 806

Query: 756  GN-KVDR------------------GQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPG-- 794
             N   DR                     L  RN    SL    D+DG+  VG ++H G  
Sbjct: 807  PNGTFDRIVGPPDFESVLSTATGGTAAALGFRNARYASL----DADGIARVGGIVHHGAI 862

Query: 795  --------------------EPYCSI-YDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKN 833
                                +P  SI Y  +   +     KG+    VD V +    +  
Sbjct: 863  LINKEQPSNAHSMGDTSGSNDPLASISYGPSPTCY-----KGAVPSIVDKVLITSSETYQ 917

Query: 834  LPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFP 893
                  +  R TR P IGDKFSSRHGQKGVC  +    DMPF+   G+ PDLI+NPH FP
Sbjct: 918  TSLLVKVLLRQTRRPEIGDKFSSRHGQKGVCGTICSQEDMPFND-QGICPDLIMNPHGFP 976

Query: 894  SRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCG 953
            SRMT+  ++E VA K G LHG+    T F    K    D   + S+ LV          G
Sbjct: 977  SRMTVGKMIELVAGKAGVLHGRRAYGTAFGE--KYGTADRVLECSRDLVK--------AG 1026

Query: 954  FNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRK 1013
            FNY G + L SG+ G  L C IF+GP+YYQ+L+HMV DK   R+ G    +TRQP +GR 
Sbjct: 1027 FNYAGKDYLTSGITGEPLLCYIFMGPIYYQKLKHMVMDKMHARARGPRAVLTRQPTEGRS 1086

Query: 1014 RGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIR 1073
            R GG+R GEMERD L+ +GA+ LL +RL   SD   ADVC  C             R + 
Sbjct: 1087 RDGGLRLGEMERDCLIGYGASMLLMERLMISSDGFKADVCQGC-------------RMLG 1133

Query: 1074 EIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI--KITLQ 1124
              G  P   +P KV            ++ +PY  + L  EL  MNI  ++TL+
Sbjct: 1134 YEGWCPSCNSPDKVA-----------SIRIPYACKLLFQELQGMNIVPRLTLK 1175


>gi|242092386|ref|XP_002436683.1| hypothetical protein SORBIDRAFT_10g006995 [Sorghum bicolor]
 gi|241914906|gb|EER88050.1| hypothetical protein SORBIDRAFT_10g006995 [Sorghum bicolor]
          Length = 1137

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 351/1206 (29%), Positives = 532/1206 (44%), Gaps = 186/1206 (15%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMFDH------------------------------- 37
            F  +R LV+ HI+SF+Y +D+G+ ++ +                                
Sbjct: 26   FLKVRGLVKEHIDSFNYFIDKGIKKIVEANNRIEARNDPSIYLRYLDVRVGMPSIYENCN 85

Query: 38   --------CRQAKISYTGKLMADVEFQYLDAGSPVV--RERFNFGQFPVMLKTRRCHLQG 87
                    CR    +Y+  +  +V+ QY      VV  R +F  G  P+ML++  C L  
Sbjct: 86   VESITPHLCRLTDRTYSAPI--EVDIQYTVGKQHVVKRRNKFIIGYMPIMLRSSACILNE 143

Query: 88   ADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAV 147
             D  +L    E   + GGYF++ G E+V   +++ +Q     ++  +          K  
Sbjct: 144  MDEDELAKYGECPLDPGGYFVVKGTEKV---ILIQEQLSKNRIIVDT--------DSKGR 192

Query: 148  VIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--LPVGIVLKALVDTNDLEIFNHL 205
            VI  V     ++  K   L++   +   +LQ  ++   +P+ +V+KA+   +D E    +
Sbjct: 193  VIASVTSSTHAIKSKTVVLMD---KGKIYLQLNQFTKPIPIIVVMKAMGMESDQEAVQMV 249

Query: 206  TCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSE 265
                D +Y            SER+             TR Q LQ++ E    V+    + 
Sbjct: 250  G--RDPRYGDLLFPSIQECASERI------------YTRQQALQYMDEK---VMYPGATN 292

Query: 266  SYYAVAETVIRDYIFVHL--NDNN--DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEI 321
            +    + +++ D    H+   D N   K      ML+++   + ++   D+ D + N+  
Sbjct: 293  NKEGRSNSILHDVFIAHVPVKDGNLRPKCIYTAVMLRRMLDAILNSDTFDDKDYVGNKRF 352

Query: 322  LLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTS 381
             L G LI++      ED  +       + +  N  K     L   + +M+      I   
Sbjct: 353  ELSGQLISLLF----EDLFKTMNSQAVERMNKNSDKTRSSPLDFSQLIMQDT----ITFG 404

Query: 382  IETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRK 440
            +E  + TG    +       R G +    RL+++  + +   +     F   R TS  R 
Sbjct: 405  LERAISTGNWDIKRFR--MHRKGVSQVLSRLSYMATLGYMTRI--TPQFEKTRKTSGPRA 460

Query: 441  LLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVG 500
            L P  WG LCP  TP+GE CGL  ++     + +  +  G + D            +GV 
Sbjct: 461  LQPSQWGMLCPCDTPEGEACGLTKNLALLSHITTDQEE-GPLIDLCHS--------LGVE 511

Query: 501  MIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGY 560
             +  L       P + L V+L+G ++G     + +++V HLR L+ S  +VI +     +
Sbjct: 512  DLLFLSSEEIHAPGSFL-VMLNGLILG--KHKDPQRLVIHLRNLRRS--NVIGE-----F 561

Query: 561  VPLSLGGAYPGLYLFTSPPKFVRPV----RNISLPSEESQN-----------------IE 599
            V + +      +++ +   +  RP+      IS   E                     IE
Sbjct: 562  VSIFINEKQRCVHIASDGGRVCRPLIIADMGISRIDETHMTKLRDGTYDFDDFLSGGLIE 621

Query: 600  LIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQ 659
             +   E+    I   +  D         TH EI P  +L VV+ L PY  HNQSPRN YQ
Sbjct: 622  YLDVNEENNALIALYEHMDQDDVERSSITHIEIEPLSILGVVSGLIPYPHHNQSPRNTYQ 681

Query: 660  CQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAY 719
            C M KQ MG       FRAD  LY L   Q P++ T T    G D+   G NA VAV+ Y
Sbjct: 682  CAMGKQAMGNIAYNQLFRADSLLYLLVYAQRPLLTTKTIELVGYDKLGAGQNATVAVMGY 741

Query: 720  TGYDMEDAMILNKSSVDRGM--CHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA---KS 774
            +GYD+EDA+++NKSS+DRG   C      T   D   DG   DR  K  +R+KD    K 
Sbjct: 742  SGYDIEDAIVMNKSSLDRGFGRCIALKKYTVLKDNYVDGVS-DRIVKP-QRDKDGVLMKQ 799

Query: 775  LHSVIDSDGLPYVGQMIHPGEPYCS----------IYDKTTNSWRTNS---RKG--SESV 819
                +D DG+   GQ+I   + Y +          I    T+S   +S    KG   E+ 
Sbjct: 800  NMRALDDDGIVAPGQIIRNHDIYVNKQTPMNTSKGIGRPLTDSCYKDSPAIYKGVDGETT 859

Query: 820  FVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVT 879
             VD V +    +  L  K  IR  HTR P +GDKFSSRHGQKGVC  +    D PFS   
Sbjct: 860  VVDRVMLCSDTNDKLSIKCIIR--HTRRPEVGDKFSSRHGQKGVCGTIIQQEDFPFSE-R 916

Query: 880  GMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESK 939
            G+ PDLI+NPH FPSRMTI  ++E +  K G   G+F   + F       N D   D S 
Sbjct: 917  GICPDLIMNPHGFPSRMTIGKMIELLGGKAGVSCGRFHYGSAFGEP--SGNADNVADISS 974

Query: 940  SLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTG 999
            +L+          GF+Y+G + LYSG+ G  L   IF+GP+YYQ+L+HMV DK   R++G
Sbjct: 975  TLIKH--------GFSYNGKDFLYSGILGQPLEAYIFMGPIYYQKLKHMVLDKMHARASG 1026

Query: 1000 TMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSV 1059
                +TRQP +GR R GG+R GEMERD L+A+GA+ L+ +RL   SD +   VC  CG  
Sbjct: 1027 PRVLLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMLIFERLMLSSDPYQVQVCRKCG-- 1084

Query: 1060 LTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
            L   + H  K +                 C  C+  + M  + +PY  + L  EL AMN+
Sbjct: 1085 LLGYYNHKLKTSY----------------CSMCKNGENMAKMRLPYACKLLFQELHAMNV 1128

Query: 1120 KITLQL 1125
               L+L
Sbjct: 1129 VPRLKL 1134


>gi|336374505|gb|EGO02842.1| hypothetical protein SERLA73DRAFT_84701 [Serpula lacrymans var.
            lacrymans S7.3]
 gi|336387393|gb|EGO28538.1| hypothetical protein SERLADRAFT_359856 [Serpula lacrymans var.
            lacrymans S7.9]
          Length = 1162

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 347/1232 (28%), Positives = 526/1232 (42%), Gaps = 222/1232 (18%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
            F  ++ LV+ HI+SF+Y +D  +  +                                  
Sbjct: 41   FLKVKGLVKQHIDSFNYFVDVDIKNIVKANNKVTSDVDPRFWLKYTDINVGYPDRTDLDA 100

Query: 37   --------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGA 88
                     CR   I+Y+  ++  V  QY    S V R   N G+ P+ML++ +C L G 
Sbjct: 101  IDKSITPHECRLRDITYSAPVV--VTIQYTRGKSVVRRPNVNIGRLPIMLRSNKCILTGK 158

Query: 89   DSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVV 148
            +  +L  + E   + GGYF++ G E+V    IL ++        S  R   E  + K VV
Sbjct: 159  NEAQLARMTECPLDPGGYFVVKGTEKV----ILVQEQL------SKNRIIVETDSVKGVV 208

Query: 149  -IRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--------LPVGIVLKALVDTNDL 199
               C       +  K Y             +GK YL        +P+ I LKAL    D 
Sbjct: 209  QASCTSSTHGGLKSKTYVATK---------KGKIYLRHNSIHEDVPIVIALKALGIQADK 259

Query: 200  EIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQP-- 257
            EI   LT    E YK    A             L E   L + T  Q L+ IG   +   
Sbjct: 260  EIL-LLTAGNTEAYKSAFSAN------------LEEAAKLGVFTHHQALEWIGTRVKVNR 306

Query: 258  VIDGLQSESYYAVAE---TVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPD 314
             + G +  ++    E   T++  ++ V   D   K   +  M +++   +D   + D+ D
Sbjct: 307  KVVGPRRPAWEEALEALATIVLAHVPVKGLDLRSKAIFVATMTRRVLMAMDDEKMVDDRD 366

Query: 315  SLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGK--KFDFFNLANIKKVMEK 372
             + N+ + L G L+ +  ++  + +    K  I   ++   +  +FD FN    +     
Sbjct: 367  YVGNKRLELAGQLLALLFEDLFKTFNSNLKSSIDKVLKKPSRTNEFDAFNTMQFQ----- 421

Query: 373  NPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAG 432
                 I +     + TG  + +      +RAG T    RL+F+  +     +   + F  
Sbjct: 422  --GDHITSGFIRAISTGNWSLKRFK--MERAGVTHVLSRLSFISALGMMTRI--SSQFEK 475

Query: 433  LRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS 491
             R  S  R L P  WG LCP  TP+GE CGL+ ++     + +  +    +R        
Sbjct: 476  TRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVEEEPIVR-------- 527

Query: 492  ILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV 551
             L  ++GV  I SL    +   P    V ++G +VG+  +    + V++ RRL+   A  
Sbjct: 528  -LAFMLGVEDI-SLATGTEIYGPHTFVVNVNGTIVGL--TRYPTRFVSNFRRLR--RAGR 581

Query: 552  IPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP--VRNISLPSEESQNIEL----IGPFE 605
            + +     +V + +   +  +++ +   +  RP  +     P   S +I L    +  F+
Sbjct: 582  LSE-----FVGVYINHHHHAVHIASDGGRICRPMIIVESGRPRVTSDHIMLLKKGVATFD 636

Query: 606  QVFMEIRCPDGGDGGRRN-AFPA----------THEEIHPTGMLSVVANLTPYSDHNQSP 654
              F+     +  D    N ++ A          TH EI P  +L  VA L PY  HNQSP
Sbjct: 637  D-FLRKGLVEYLDVNEENDSYIALYESDIVPTTTHLEIEPFTLLGAVAGLIPYPHHNQSP 695

Query: 655  RNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIV 714
            RN YQC M KQ +G        R D  LY    PQ P+V+T T    G D  P G NA V
Sbjct: 696  RNTYQCAMGKQAIGAIGYNQFNRIDTLLYLSVYPQQPMVKTKTIELIGYDRLPAGQNATV 755

Query: 715  AVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGN-KVDR-GQKLFRRNKDA 772
            AV++Y+GYD+EDA+ILNK+S+DRG    Q+ +     +    N   DR        N   
Sbjct: 756  AVMSYSGYDIEDALILNKASLDRGYGRCQVLRKNATLIRKYPNGTFDRLADAPLDENGQI 815

Query: 773  KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESV------------- 819
            +  + ++  DGL  VG+ + PG+ Y  I  +T  +   NS  G  +              
Sbjct: 816  QKKYDIVQLDGLAGVGERVDPGDVY--INKQTPTNANDNSFTGQAAAVPYKNSPMTYKSP 873

Query: 820  ---FVDYVAV-DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPF 875
               ++D V V D +N + L +   +  R TR P +GDKFSSRHGQKGVC  +    DMPF
Sbjct: 874  VAGYIDKVLVSDTENDQTLIK---VLIRQTRRPELGDKFSSRHGQKGVCGLIVNQEDMPF 930

Query: 876  SGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGT 935
            +   G+ PD I+NPH FPSRMT+  ++E +A K G L GK    T F  S          
Sbjct: 931  ND-QGINPDTIMNPHGFPSRMTVGKMIELLAGKAGVLSGKLQYGTAFGGSK--------- 980

Query: 936  DESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRL---------- 985
                  V+++  +L   GFNY G ++L SG+ G  +   ++ GP+YYQ+L          
Sbjct: 981  ------VEDMSRILIEKGFNYAGKDMLTSGITGEPMEAYVYFGPIYYQKLSEIVVAYLSS 1034

Query: 986  ---------RHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYL 1036
                      HMV DK   R+ G    +TRQP +GR R GG+R GEMERD L+ +GA  L
Sbjct: 1035 SLNSSNLATEHMVMDKMHARARGPRATLTRQPTEGRSREGGLRLGEMERDCLIGYGATQL 1094

Query: 1037 LHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSK 1096
            L +RL   SD    + C  CG +    +                        C  C++SK
Sbjct: 1095 LLERLMISSDKFEVNACQECGLMGYNGW------------------------CTYCKSSK 1130

Query: 1097 GMETVAMPYVFRYLAAELAAMNIKITLQLGDG 1128
             M  + +PY  + L  EL AMN+   L L D 
Sbjct: 1131 RMAQLTIPYAAKLLFQELMAMNVIPRLVLDDA 1162


>gi|388581064|gb|EIM21375.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Wallemia sebi CBS 633.66]
          Length = 1152

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 330/1165 (28%), Positives = 511/1165 (43%), Gaps = 203/1165 (17%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRER-FNFGQFPVMLKTRRCHLQGADSQKLVSL 96
             R   ++Y+  +   VE+     G  +VR R    G+ PVML++ +C L G D + L   
Sbjct: 116  ARLRDMTYSAPIRISVEYT---RGKQIVRRRGIPIGRLPVMLRSNKCILSGKDEETLARY 172

Query: 97   KEEAAEMGGYFILNGLERVF---------RSVIL--PKQNYPMSMVRSSFRDRREGYTDK 145
            +E   + GGYF++ G E+V          R +I   PK+N   S+  S+           
Sbjct: 173  RECPLDPGGYFVVKGTEKVILVQEQLSKNRMIIETDPKKNVQASVTSSTHE--------- 223

Query: 146  AVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHL 205
                   RK +S V  K     NG + L     G +  +P+ + LKA+  T+D EI   L
Sbjct: 224  -------RKSKSYVATK-----NGKIYLRHNSIGDD--VPIVVALKAMGVTSDKEIL-QL 268

Query: 206  TCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGL--- 262
               +D++YK            E   I + E   + + T +Q L+ IG   +     +   
Sbjct: 269  VAGHDDEYK------------EVFYINIEEALRMGIHTEMQALEWIGARSKSARRAVGPA 316

Query: 263  -QSESYYAVAETVIRDYIFVHLNDNNDKFN-----LLIFMLQKLFSLVDHTSVSDNPDSL 316
             Q    +  A   +   +  H+   N  F      + + + + L ++VD   + D  D +
Sbjct: 317  HQKRPVWEDAIETLSTIVLAHVPVENLNFRPKAIYVAVMVRRVLMAMVDEKMLDDR-DYV 375

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+++  ++                     KKF+     NI KV++K P++
Sbjct: 376  GNKRLELAGQLLSLLFEDLF-------------------KKFNHDLKLNIDKVLKK-PNR 415

Query: 377  QIGTSIETMLKTG---------RLATQTGLDLQ----QRAGYTVQAERLNFLRFISFFRA 423
                   T L  G         R  +     L+    +RAG T    RL+++  +     
Sbjct: 416  TTEFDAYTQLLYGGDHITSGFVRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTR 475

Query: 424  VHRGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNI 482
            +   + F   R  S  R L P  WG LCP  TP+GE CGL+ ++     + +  +    +
Sbjct: 476  I--SSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVEEEPIV 533

Query: 483  RDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLR 542
                 +    + +L G  +      +V           L+G ++GV  +    K V   R
Sbjct: 534  NICYMLGVEDVCLLTGTELYRRDTYIVS----------LNGNLIGV--TRHPLKFVTQFR 581

Query: 543  RLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP---VRNISLPSEESQNIE 599
            +L+ +            +V + +   +  + + +   +  RP   V N S     S++I+
Sbjct: 582  KLRRNG-------FINEFVSVYINHHHNSVNISSDGGRICRPMIIVEN-SFSKVTSEHIK 633

Query: 600  LI--GPFE-QVFMEIRCPDGGDGGRRN-AFPATHE----------EIHPTGMLSVVANLT 645
            ++  G  +   F+     +  D    N A+ A  E          EI P  +L   A L 
Sbjct: 634  MLKAGKIDFDAFLTQGLVEYLDVNEENDAYIAISENDITETSTHLEIEPFTLLGACAGLI 693

Query: 646  PYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDE 705
            PY  HNQSPRN YQC M KQ +G        R D  LY +  PQ P+V+T T    G D+
Sbjct: 694  PYPHHNQSPRNTYQCAMGKQAIGAIAYNQLNRIDTLLYLMVYPQQPMVKTKTIELIGYDK 753

Query: 706  YPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQ--TETIDLSDDGNKVDRGQ 763
             P G NA+VAV++Y+GYD+EDA+ILNK+S+DRG    Q+ +  +  I    +G       
Sbjct: 754  LPAGQNAMVAVMSYSGYDIEDALILNKASLDRGFGRCQVMRKYSTMIRKYPNGTHDRLAD 813

Query: 764  KLFRRNKDAKSLHSVIDSDGLPYVGQM--------------------IHPGEPYCSIYDK 803
                 +      +  ++ DG+   G+                     I+PG+   S Y  
Sbjct: 814  APIGLDGVIPKKYQALEPDGIAGAGERVDTNDVIVNKQSPSNALDNSINPGQADSSTYKN 873

Query: 804  TTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGV 863
               S+     K     FVD V +    S+    KA    R TR P +GDKFSSRHGQKGV
Sbjct: 874  APMSY-----KSPVPGFVDQVLITDTESEQTLVKA--LLRQTRRPELGDKFSSRHGQKGV 926

Query: 864  CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFA 923
            C  + P  DMPF+   G+ PD+I+NPH FPSRMT+  ++E ++ K G + G     T F 
Sbjct: 927  CGLIVPQADMPFND-RGITPDVIMNPHGFPSRMTVGKMIELLSGKAGVIRGTLEYGTAFG 985

Query: 924  NSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQ 983
             S                VD++ ++L   G++Y G E + SG+ G   T   ++GP+YYQ
Sbjct: 986  GSK---------------VDDMSQVLIDNGYSYAGKETMTSGITGECHTFYTYLGPIYYQ 1030

Query: 984  RLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHT 1043
            +L+HMV DK   R+ G    +TRQP +GR R GG+R GEMERD+LL +GAA+L+ +RL  
Sbjct: 1031 KLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDALLGYGAAHLVRERLML 1090

Query: 1044 CSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAM 1103
             SD    DVC+ CG++   TF                        C  C++ K +  + +
Sbjct: 1091 SSDLFHVDVCNDCGTMGYNTF------------------------CPMCKSQKNISNIQI 1126

Query: 1104 PYVFRYLAAELAAMNIKITLQLGDG 1128
            PY  + L  EL AMNI   + L D 
Sbjct: 1127 PYAAKLLFQELLAMNIYPKISLEDA 1151


>gi|14601675|ref|NP_148216.1| DNA-directed RNA polymerase subunit B [Aeropyrum pernix K1]
 gi|5105547|dbj|BAA80860.1| DNA-directed RNA polymerase subunit B [Aeropyrum pernix K1]
          Length = 1169

 Score =  391 bits (1004), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 338/1168 (28%), Positives = 519/1168 (44%), Gaps = 164/1168 (14%)

Query: 15   LVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQF 74
            + R  IESFD  +       F+ CR   I+Y+  LM  VE   +               F
Sbjct: 98   MAREVIESFDRRVTP-----FE-CRVRGITYSAPLM--VEMTIVQDNMIEKTREVKIADF 149

Query: 75   PVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMV--- 131
            PVM+K+    L   D + ++ + E+  + GGYFI+NG E+V    I+ +++  ++ +   
Sbjct: 150  PVMVKSVLDPLSKYDEETVIEMGEDPGDPGGYFIINGSEKV----IVAQEDLAVNRIIVN 205

Query: 132  RSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLK 191
            +S+    R  +T KAV      + Q+ V       L  S      L    Y +P+ ++L+
Sbjct: 206  KSTAATARITHTAKAVSTVLGLRRQAIVDRMSDGTLEAS------LSRLRYRIPLVVLLR 259

Query: 192  ALVDTNDLEIFNHLTCCYDEKYKK----EKGAVGSPLVSERVKIILAEVQDLSLTTRLQC 247
            AL    D+EI   ++   D + +     EKG   +P                   T+   
Sbjct: 260  ALGLEKDMEIMLAVSADPDVQREMLPSLEKGRALAP-------------------TKEDA 300

Query: 248  LQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQKLFSL 303
            L+++G    P   G   +     AE  +   +  HL     D   K   L  M  ++  L
Sbjct: 301  LKYLGNRIAP---GQPLDVRIRRAEEFLDTQLLPHLGNRPEDRIKKAYFLAEMANRVLQL 357

Query: 304  VDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRK-GKKLIQDEIENNGKKFDFFN 362
                   D+ D L N+ + L G LI    +E LE       +KL +   E    + DF  
Sbjct: 358  YLGKRGEDDKDFLGNKRLRLAGDLIAELFRESLEALANTMAQKLEEQLAERRQIRLDFLV 417

Query: 363  LANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFR 422
               I           I   ++  + TG          Q R G + Q +R N++  +S  R
Sbjct: 418  RPTI-----------ISDRLKGAIATGNWG-------QDRTGISQQLDRTNWISLLSHLR 459

Query: 423  AVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNI 482
             V    S  G      R L    WG  CP  TP+G  CGL+ ++  +  ++   D     
Sbjct: 460  RVISPLS-RGQAHFEARDLHGSHWGRYCPFETPEGINCGLVKNLALSAYISVGVDE---- 514

Query: 483  RDFSKMRTSILRVLIGVGMIPSLPKLVKSG--PPAVL----SVLLDGRVVGVIPS-SEIE 535
                 +   IL   +GV  +  + +  K    PP ++     V ++GR +G  P+ +E+ 
Sbjct: 515  ----SVVEEILVKDLGVAPLERILEEAKQAGEPPEIMLKGTKVFINGRPLGYHPNGAELA 570

Query: 536  KVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNIS--LPSE 593
            + +  LRR   S    +    EV    L   G    LY+ T   + +RPV  +    P  
Sbjct: 571  RKIRELRR---SDKLEVERPWEVSVYHLR-EGEIDELYVNTDSGRLMRPVVVVENGEPKL 626

Query: 594  ESQNIELIGPFEQVF--------MEIRCPDGGDGGRRNAFPA------THEEIHPTGMLS 639
              +++E +   E  F        +E+  P+          P       TH E+    ++ 
Sbjct: 627  TREHVEKLSRGEITFWDLVKQGVVEMLDPEEEQNALIAELPWEVTKEHTHMELWVPAIVG 686

Query: 640  VVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYT 699
            V A    Y +HNQSPRN YQ  MAKQ +G      + R D   Y LQ PQ PIV+T    
Sbjct: 687  VAAATIGYLEHNQSPRNTYQAAMAKQALGVYALNYRIRLDSHSYLLQYPQVPIVQTRMLD 746

Query: 700  KYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTET-IDLSDDGNK 758
              G +E P G N +VA+++YTGY++EDA+I NK S+D G+     ++  T I+    G +
Sbjct: 747  IMGYNERPAGQNMVVAIMSYTGYNIEDALIFNKGSIDMGLARAYFFRVYTGIENEYPGGE 806

Query: 759  VDR-----GQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGE-------PYCSIYDKTTN 806
             DR       +++  +    + ++ +++DG+      +  GE       P   + +    
Sbjct: 807  RDRITLPKPDEVY--DYRGAAAYAKLEADGIVAPETEVEGGEILIGRVSPPRFLGEGRVI 864

Query: 807  SWRTNSRKGS-------ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHG 859
            S  T  R+ +       E   VD V +     +N  +   +R R+ R P IGDKF+SRHG
Sbjct: 865  SMATVRRRDTSIPMRLGEKGVVDMVVISTTVERN--KLVKVRVRNLRIPEIGDKFASRHG 922

Query: 860  QKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDA 919
            QKGV   ++P  DMP++   G+ PD+I+NPHA PSRMT+  LLE +A K G++ G+F+DA
Sbjct: 923  QKGVIGMIFPRYDMPYTE-EGIEPDVILNPHAIPSRMTVGQLLEEIAGKLGAIKGRFVDA 981

Query: 920  TPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGP 979
            TPF                K  +D L   L   G++ +  EV+Y G  G  +   I IG 
Sbjct: 982  TPFF---------------KEDIDGLRIELLKEGYDPNAREVMYDGRTGQIIEAPITIGV 1026

Query: 980  VYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHD 1039
             YYQRL HMV+DK   R+TG +  +TRQP +G+ R GG+RFGEMERD L+ HGA+ LL D
Sbjct: 1027 AYYQRLYHMVADKIHARATGRVHLLTRQPTEGKARQGGLRFGEMERDCLVGHGASMLLRD 1086

Query: 1040 RLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGME 1099
            R+   SD +V  VC+ CG++  A F                 R  K + C        + 
Sbjct: 1087 RMLDNSDAYVMYVCNTCGNI--AWF----------------NRRKKVLECPIHGEEGDIR 1128

Query: 1100 TVAMPYVFRYLAAELAAMNIKITLQLGD 1127
             V +PY F+ L  E+ +M IK  L++ D
Sbjct: 1129 PVKVPYAFKLLLQEITSMMIKPELKVAD 1156


>gi|300707573|ref|XP_002995989.1| hypothetical protein NCER_100983 [Nosema ceranae BRL01]
 gi|239605241|gb|EEQ82318.1| hypothetical protein NCER_100983 [Nosema ceranae BRL01]
          Length = 1143

 Score =  390 bits (1003), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 335/1156 (28%), Positives = 515/1156 (44%), Gaps = 184/1156 (15%)

Query: 36   DHCRQAKISYTGKLMADVEFQYLDAGSPVVRE----RFNFGQFPVMLKTRRCHLQGADSQ 91
            +  R   I+Y  +L  D+  +  ++ S VV +    R  FG  PVM+K+  C       +
Sbjct: 93   NEARLRDITYLSQLYIDI-VKTTESESGVVDQHRYSRIPFGSLPVMVKSSYCSTYKLSEE 151

Query: 92   KLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC 151
            +L+ + E   ++GGYFI+NG E+V    I+ ++    + +    + +   Y+  A  IR 
Sbjct: 152  ELIKIGECEYDVGGYFIINGSEKV----IIAQERMASNTIYVFKKSQPASYSHYAE-IRS 206

Query: 152  V----RKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTC 207
            V     K+ S+V+LKL    N  +R+      +E  +P+ I+ +AL   +D EI +H+  
Sbjct: 207  VPEKGAKNPSAVSLKLCRNPN-VIRVSIPYAKQE--IPLFIIYRALGFLSDKEITDHIIT 263

Query: 208  CYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESY 267
              D++           L+ E + +  A VQD ++      L +IG+   PV  G   E  
Sbjct: 264  TNDDEM--------FDLLKESI-LESAVVQDQNVA-----LDYIGKRAAPV--GSSREKR 307

Query: 268  YAVAETVIRDYIFVHLNDN----NDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILL 323
               A+ ++   +  H+         K   L +M+QKL  +       D+ D    + + L
Sbjct: 308  INFAKDLLAKELLPHIGTQEFCETKKAYFLGYMVQKLLLVALGRKREDDRDHYGKKRMDL 367

Query: 324  PGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIE 383
             G L+    +   +    +  K +Q  IE        FN+A             +G    
Sbjct: 368  AGPLLASLFRSLYKKLCSETAKHMQKCIEGGRD----FNIA-------------LGLKAS 410

Query: 384  TMLKTGRLATQTG------LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS 437
            T+ +  R A  TG        +Q +AG      R NF+  +S  R V+      G +   
Sbjct: 411  TIAQGFRYAIATGNWGDQAHAMQSKAGVAQVLNRYNFVSTLSHLRRVNTPIEKEG-KLAK 469

Query: 438  VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLI 497
             R+L    WG +CP  TP+G+ CGL+ +++    ++    S             I+  L 
Sbjct: 470  PRQLHNTHWGMICPAETPEGQACGLVKNLSLMAYISVGSSSE-----------PIVEFLE 518

Query: 498  GVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSE--IEKVVAHLRRLKVSAASVIPDD 555
              G+  SL ++          V ++G  VG+    E  I  +    R L++     I  D
Sbjct: 519  ECGL-ESLEEISHLQLQNATKVFVNGVWVGIHEDPEYLISSLRMLRRTLEIDKEVSIIRD 577

Query: 556  LEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------------ 597
            +    + +      P   LF         V+N  L  +E+ +                  
Sbjct: 578  IREKEIKIQSDSGRPCRPLFV--------VKNNKLCIDEAYSNKEEIKRCTWNDFIENGL 629

Query: 598  IELIG-PFEQVFMEIRCPDGGDGGRRNAFPA-------THEEIHPTGMLSVVANLTPYSD 649
            IE +    E+V M    PD  +  +++   +       TH EIHP  +L + A++ P+ D
Sbjct: 630  IEFLDVEEEEVSMIAMSPDQLNSVKKDLRASEDLNINYTHCEIHPATILGICASVIPFPD 689

Query: 650  HNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTG 709
            HNQSPRN YQ  M KQ MG        R D     L  PQ P+V T +       E P G
Sbjct: 690  HNQSPRNTYQSAMVKQAMGIYATNFMLRMDTLSNILFYPQKPLVTTKSMEYIRFKELPPG 749

Query: 710  TNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLS-------DDGNKVDRG 762
             NAIVA+ +YTGY+ ED++I+N+S++DRG+     Y+T T   +       ++  K  R 
Sbjct: 750  QNAIVAIASYTGYNQEDSIIMNQSAIDRGLFRSFFYRTYTDQENTTRPGTHEEFCKPLRS 809

Query: 763  QKLFRRNKDAKSLHSVIDSDGLPYVGQ--------------MIHP-----GEPYCSIYDK 803
            + +  RN +    +S +D+DG+   G               ++ P     G P     D 
Sbjct: 810  EVIRMRNLN----YSKLDNDGIIPTGTRVTGDDVLIGKVSPILDPERSTKGNPVYLKKDS 865

Query: 804  TTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGV 863
            +T+  RT      E  FVD V V  K        A ++ R  R P +GDKF+SRH QKG 
Sbjct: 866  STSMRRT------EDGFVDSVIVTNKEGYKF---AKVKVRSCRIPQMGDKFASRHAQKGT 916

Query: 864  CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFA 923
                    DMPF+   G+ PD+IINPHA PSRMTI  L+E +  K  +L G+  DATPF 
Sbjct: 917  VGITLNQEDMPFTS-EGIVPDIIINPHAIPSRMTIGHLIECLMGKTCALTGEEGDATPF- 974

Query: 924  NSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQ 983
                  NG T        VD + E L+   +   G EV+Y+G+ G +L  +I+IGP YYQ
Sbjct: 975  ------NGVT--------VDNISEKLKEYNYQQRGFEVMYNGMTGHKLRAQIYIGPTYYQ 1020

Query: 984  RLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHT 1043
            RL+HMV DK   R+ G +  +TRQP++GR R GG+RFGEMERD +++HGA+  L +RL  
Sbjct: 1021 RLKHMVDDKIHARAKGPLQILTRQPVEGRSRDGGLRFGEMERDCIISHGASAFLKERLMD 1080

Query: 1044 CSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAM 1103
             SD +   +C LCG +   T  + +                    C  C     +  V +
Sbjct: 1081 VSDPYTCCICDLCGLIAIDTKRYNE--------------------CKGCNNRTNLSLVEI 1120

Query: 1104 PYVFRYLAAELAAMNI 1119
            PY F+ L  EL  MNI
Sbjct: 1121 PYAFKLLIQELMGMNI 1136


>gi|409043140|gb|EKM52623.1| hypothetical protein PHACADRAFT_100019 [Phanerochaete carnosa
            HHB-10118-sp]
          Length = 1141

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 340/1220 (27%), Positives = 528/1220 (43%), Gaps = 216/1220 (17%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMF--------------------------------- 35
            F  ++ LV+ HI+SF+Y +D  +  +                                  
Sbjct: 38   FLKVKGLVKQHIDSFNYFVDVDIKSILRANSKVTSDVDPRFWLKYTDIHVGFPDRTDPDA 97

Query: 36   -------DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGA 88
                     CR    +Y+  ++A +  QY    + V R   N G+ P+ML++ +C L G 
Sbjct: 98   VDKSVTPHECRLRDTTYSAPILATI--QYTRGKNVVRRPNVNIGRLPIMLRSNKCVLSGR 155

Query: 89   DSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVV 148
               +L  + E   + GGYF++ G E+V    IL ++    + +     D  +G     V 
Sbjct: 156  TEIQLARMSECPLDPGGYFVVKGTEKV----ILVQEQLSKNRIIVEV-DPVKG----VVQ 206

Query: 149  IRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--------LPVGIVLKALVDTNDLE 200
              C       +  K Y             +GK YL        +P+ I LKAL   +D E
Sbjct: 207  ASCTSSTHGGLKSKTYVATK---------KGKIYLRHNSIHEDVPIVIALKALGFQSDKE 257

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ---P 257
            I   LT   +E YK    +  SP + E  K          + T+ Q L++IG   +    
Sbjct: 258  IL-LLTAGNNEAYK----SAFSPNLEEAAKS--------GVFTKHQALEYIGSRVKVNRK 304

Query: 258  VIDGLQS--ESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
            VI   +   E    V  T++  ++ V   D   K   +  M +++   +D   + D+ D 
Sbjct: 305  VIGPRRPAWEEALEVLATIVLAHVPVVNMDFRGKAIFVATMTRRVLMAMDDEKMVDDRDY 364

Query: 316  LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGK--KFDFFNLANIKKVMEKN 373
            + N+ + L G L+ +  ++  + +    K  I   ++   +  +FD FN           
Sbjct: 365  VGNKRLELAGQLLALLFEDLFKTFNTNLKSAIDKVLKKPSRTSEFDAFNTMQFM------ 418

Query: 374  PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
                I       + TG  + +      +RAG T    RL+F+  +     +   + F   
Sbjct: 419  -GDHITAGFVRAISTGNWSLKRFK--MERAGVTHVLSRLSFISALGMMTRI--SSQFEKT 473

Query: 434  RTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSI 492
            R  S  R L P  WG LCP  TP+GE CGL+ ++     + +  D    +R         
Sbjct: 474  RKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVDEEPIVR--------- 524

Query: 493  LRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVI 552
            L  ++GV  I +       GP   + V ++G ++G+  +    + V + R+L+   A  +
Sbjct: 525  LAYMLGVEDISTATGTEIYGPHTYV-VNVNGSIIGL--TRYPGRFVHNFRKLR--RAGRL 579

Query: 553  PDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP--VRNISLPSEESQNIELIGPFEQVFME 610
             +     +V + +   +  + + +   +  RP  + +   P   +++I L+   +  F +
Sbjct: 580  SE-----FVSVYINHHHRTVLIASDGGRICRPMIIADRGRPRVTTEHILLLKEGKMTFDD 634

Query: 611  ------IRCPDGGDGG-------RRNAFPAT-HEEIHPTGMLSVVANLTPYSDHNQSPRN 656
                  +   D  +           +  P T H EI P  +L  VA L PY  HNQSPRN
Sbjct: 635  FLKQGLVEYLDVNEENDSYIALYESDIVPTTTHLEIEPFTILGAVAGLIPYPHHNQSPRN 694

Query: 657  MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
             YQC M KQ +G      + R D  LY    PQ P+V+T T    G D  P G NA VAV
Sbjct: 695  TYQCAMGKQAIGAIGYNQQSRIDTLLYLSVYPQQPMVKTKTIELIGYDRLPAGQNATVAV 754

Query: 717  LAYTGYDMEDAMILNKSSVDRGMCHGQI----------YQTETIDLSDDGNKVDRGQKLF 766
            ++Y+GYD+EDA+I NK+S+DRG    Q+          Y   T D   D   VD G ++ 
Sbjct: 755  MSYSGYDIEDALIQNKASLDRGYGRVQVLRKNATLIRKYPNGTYDRLADA-PVDEGSQIQ 813

Query: 767  RRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESV------- 819
            ++       + +I +DGL  VG+ + PG+ Y  I  +T  +   N+  G  +        
Sbjct: 814  KK-------YDIIQADGLAGVGERVDPGDVY--INKQTPTNANDNTFTGQAATVPYKNSP 864

Query: 820  ---------FVDYVAV-DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWP 869
                     ++D V V D +N + L     +  R TR P +GDKFSSRHGQKGVC  +  
Sbjct: 865  MTYKSPVAGYIDKVMVTDTENDQTL---IKVLIRQTRRPELGDKFSSRHGQKGVCGLIVN 921

Query: 870  DIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKT 929
              DMPF+   G+ PD I+NPH FPSRMT+  ++E +A K G L GK    T F  S    
Sbjct: 922  QEDMPFND-QGIVPDTIMNPHGFPSRMTVGKMIELLAGKAGVLAGKLQYGTAFGGSK--- 977

Query: 930  NGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQ-RLRHM 988
                        V+++  +L   GF+Y G ++L SG+ G  +   ++ GP+YYQ  L HM
Sbjct: 978  ------------VEDMSRILVENGFSYAGKDMLTSGITGEPMEAYVYFGPIYYQVSLSHM 1025

Query: 989  VSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYH 1048
            V DK   R+ G    +TRQP +GR R GG+R GEMERD L+ +GA  LL +RL   SD  
Sbjct: 1026 VVDKMHARARGPRATLTRQPTEGRSREGGLRLGEMERDCLIGYGATQLLLERLMISSDKF 1085

Query: 1049 VADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFR 1108
              + C  CG +    +                        C  C++SK M  + +PY  +
Sbjct: 1086 EVNACEECGLMGYNGW------------------------CTYCKSSKKMAQLTIPYAAK 1121

Query: 1109 YLAAELAAMNIKITLQLGDG 1128
             L  EL AMN+   L L D 
Sbjct: 1122 LLFQELMAMNVVPRLVLDDA 1141


>gi|189230055|ref|NP_001121521.1| polymerase (RNA) III (DNA directed) polypeptide B [Xenopus (Silurana)
            tropicalis]
 gi|183986364|gb|AAI66377.1| LOC100158643 protein [Xenopus (Silurana) tropicalis]
          Length = 1134

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 330/1210 (27%), Positives = 525/1210 (43%), Gaps = 204/1210 (16%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
            F  ++ LV+ HI+SF+Y +++ + ++                                  
Sbjct: 33   FLKVKGLVKQHIDSFNYFINDEIKKIMKANEKVTSDADPMWYLKYLNIYVGLPDVEESFN 92

Query: 37   --------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGA 88
                     CR   ++Y+  +  D+E  Y      ++R     G+ P+ML++  C L G 
Sbjct: 93   VTRPVSPHECRLRDMTYSAPITVDIE--YTRGSQRIIRNALPIGRMPIMLRSSNCVLTGK 150

Query: 89   DSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVV 148
               +   L E   + GGYFI+ G+E+V   +++ +Q   +S  R      R+G    +V 
Sbjct: 151  TPAEFAKLNECPLDPGGYFIVKGVEKV---ILIQEQ---LSKNRIIVEADRKGTVGASVT 204

Query: 149  IRC-VRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--------LPVGIVLKALVDTNDL 199
                 +K ++++ +K               QG+ YL        +P+ I+ KA+   +D 
Sbjct: 205  SSTHEKKSRTNLVVK---------------QGRFYLKHNTLTEDIPIAIIFKAMGVESDQ 249

Query: 200  EIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVI 259
            EI   +          E+  + +   S      L E Q   + T++Q L+ IG   +   
Sbjct: 250  EIVQMIG--------TEEHVIAAFAPS------LEECQKAQIFTQMQALKFIGNKVRRQR 295

Query: 260  DGLQS---ESYYAVAETVIRDYIFVHLNDNNDKFN---LLIFMLQKLFSLVDHTSVSDNP 313
                S   +S    A  ++   I  H+      F    + I ++ +   L    +  D+ 
Sbjct: 296  MWGSSGPKKSKIDEARELLASTILTHVPVKEFHFRTKCIYIAVMVRRVILAQGANKVDDR 355

Query: 314  DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEI-ENNGKKFDFFNLANIKKVMEK 372
            D   N+ + L G L+++  ++  + +  + KK+    I +    +FD         V++ 
Sbjct: 356  DYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFD---------VVKH 406

Query: 373  NPSKQIGTSIETMLKTGRLATQT-GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFA 431
                QI   +   + +G  + +   +D   R G T    RL+++  +     +   + F 
Sbjct: 407  MRQDQITNGMVNAISSGNWSLKRFKMD---RQGVTQVLSRLSYIAALGMMTRI--SSQFE 461

Query: 432  GLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRT 490
              R  S  R L P  WG LCP  TP+GE CGL+ ++     + +  +    I+  + +  
Sbjct: 462  KTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLAANLGV 521

Query: 491  SILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAAS 550
              + +L G  +              V  V L+G ++GVI   + +K+V   R ++   A 
Sbjct: 522  EDVNLLCGEEL----------SYANVFLVFLNGNILGVI--RDHQKLVNTFRLMR--RAG 567

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP---VRNISLPSEESQNIEL---IGPF 604
             I +     +V +S   +   +Y+ +   +  RP   V+N           EL      F
Sbjct: 568  YINE-----FVSISTNISDRCVYISSDGGRLCRPYIIVKNQRSAVTNKHIQELSQGYRSF 622

Query: 605  EQVFME--IRCPDGGDGGRRNAF--------PATHEEIHPTGMLSVVANLTPYSDHNQSP 654
            E    E  +   D  +    N            TH EI P  +L V A L PY  HNQSP
Sbjct: 623  EDFLHESLVEYLDVNEENDCNVALYEHTITKHTTHLEIEPFTLLGVCAGLIPYPHHNQSP 682

Query: 655  RNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIV 714
            RN YQC M KQ MG      + R D  +Y L  PQ P+V+T T      ++ P G NA V
Sbjct: 683  RNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQRPMVKTKTIELIEFEKLPAGQNATV 742

Query: 715  AVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR--GQKLFRRNKD 771
            AV++Y+GYD+EDA++LNK+S+DRG     +Y+     L    N+  D+  G  L    + 
Sbjct: 743  AVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYSNQTFDKVMGPMLDANTRK 802

Query: 772  AKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTN---------------SRKGS 816
                H ++D+DG+   G+ +   +   + Y  T                      + KG 
Sbjct: 803  QIWRHEILDADGICSPGEKVENKQVLVNKYMPTVTQTPLEGSSVPQQPQYKDVPITYKGP 862

Query: 817  ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS 876
               +++ V +          K  I  R TR P IGDKFSSRHGQKGVC  + P  DMPF 
Sbjct: 863  TDSYIEKVMISSNAEDAFLIK--ILLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFC 920

Query: 877  GVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTD 936
              TG+ PD+I+NPH +PSRMT+  L+E +A K G L G+F   T F  S           
Sbjct: 921  E-TGICPDIIMNPHGYPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSK---------- 969

Query: 937  ESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVR 996
                 V ++ E L   G+NY G + + SG+ G  L   I+ GPVYYQ+L+HMV DK   R
Sbjct: 970  -----VKDVCEDLIRYGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHAR 1024

Query: 997  STGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLC 1056
            + G    +TRQP +GR R GG+R GEMERD L+ +GA+ LL +RL   SD    DVC  C
Sbjct: 1025 ARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGKC 1084

Query: 1057 GSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAA 1116
            G +  + +                        CH C++S  + ++ +PY  + L  EL +
Sbjct: 1085 GLLGYSGW------------------------CHFCKSSCHVSSLRIPYACKLLFQELQS 1120

Query: 1117 MNIKITLQLG 1126
            MNI   L+L 
Sbjct: 1121 MNIIPRLKLA 1130


>gi|432863563|ref|XP_004070128.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Oryzias
            latipes]
          Length = 1093

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 323/1143 (28%), Positives = 510/1143 (44%), Gaps = 209/1143 (18%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
             CR   ++Y+  +  D+E  Y      ++R     G+ P+ML++  C L G    +   L
Sbjct: 101  ECRLRDMTYSAPITVDIE--YTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPMEFSKL 158

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC-VRKD 155
             E   + GGYFI+ G E+V   +++ +Q   +S  R      R+G    +V      +K 
Sbjct: 159  NECPLDPGGYFIVKGQEKV---ILIQEQ---LSKNRIIVDQDRKGTVGASVTSSTHEKKS 212

Query: 156  QSSVTLKLYYLLNGSVRLGFWLQGKEYL--------LPVGIVLKALVDTNDLEIFNHLTC 207
            ++++ +K               QG+ YL         P+ I+ K +   +D EI      
Sbjct: 213  RTNIIVK---------------QGRFYLRHNTLSEDAPIAIIFKGMGVESDQEI------ 251

Query: 208  CYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESY 267
                                 V++I  E             +H+  +F P ++  Q    
Sbjct: 252  ---------------------VQMIGTE-------------EHVMANFAPSLEECQKAQI 277

Query: 268  YAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
            +   +T ++++ F        K   L  M++++  L    +  D+ D   N+ + L G L
Sbjct: 278  FT--QTQVKEFNF------RAKCIYLAVMVRRVI-LAQGENKVDDRDYYGNKRLELAGQL 328

Query: 328  ITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLK 387
            +++  ++  + +  + KK I D+I    +   F    ++ K M ++   QI   +   + 
Sbjct: 329  LSLLFEDLFKKFNSELKK-IADQIIPKQRAAQF----DVVKHMRQD---QITNGMVNAIS 380

Query: 388  TGRLATQT-GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPES 445
            TG  + +   +D   R G T    RL+++  +     +   + F   R  S  R L P  
Sbjct: 381  TGNWSLKRFKMD---RQGVTQVLSRLSYISALGMMTRI--SSQFEKTRKVSGPRSLQPSQ 435

Query: 446  WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
            WG LCP  TP+GE CGL+ ++     + +  +    I+    +    + +L G  +    
Sbjct: 436  WGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLALNLGVEDVNLLCGEEL---- 491

Query: 506  PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
                    P+V  V L+G ++GVI +    K+V+  R ++   A  I +     +V +S 
Sbjct: 492  ------SYPSVFLVFLNGNILGVIRNHH--KLVSTFRLMR--RAGFINE-----FVSIST 536

Query: 566  GGAYPGLYLFTSPPKFVRP--VRNISLPSEESQNIELIGP----FEQVFMEIRCPDGGDG 619
                  +Y+ +   +  RP  +     P  +S++IE +      FE  F+     +  D 
Sbjct: 537  NLTDRCVYISSDGGRLCRPYIIVKKGQPMVKSKHIEDLSQGYRNFED-FLHEGLVEYLDV 595

Query: 620  GRRNAF-----------PATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMG 668
               N               TH EI P  +L V A L PY  HNQSPRN YQC M KQ MG
Sbjct: 596  NEENDCQIALYEHMINKETTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMG 655

Query: 669  FSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAM 728
                  + R D  +Y L  PQ P+V+T T      ++ P G NA VAV++Y+GYD+EDA+
Sbjct: 656  TIGYNQRNRIDTLMYLLAYPQRPMVKTKTIELIDFEKLPAGQNATVAVMSYSGYDIEDAL 715

Query: 729  ILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR--GQKLFRRNKDAKSLHSVIDSDGLP 785
            +LNK+S+DRG     +Y+     L    N+  D+  G  L    +     H+++D+DG+ 
Sbjct: 716  VLNKASLDRGFGRCLVYKNTKCTLRRYTNQTFDKVMGPMLDAATRKPLWRHNILDADGIC 775

Query: 786  YVGQMI-----------------------HPGEPYCSIYDKTTNSWRTNSRKGSESVFVD 822
              G+ +                        PG+P    Y +   S+     KGS   +++
Sbjct: 776  CPGEKVENKQILVNKSMPTVTQTPLEGSAQPGQPQ---YKEVPISY-----KGSTDSYIE 827

Query: 823  YVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMR 882
             V +          K  I  R TR P IGDKFSSRHGQKGVC  + P  DMPF   +G+ 
Sbjct: 828  KVMISSNAEDAFLIK--ILLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCD-SGVC 884

Query: 883  PDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLV 942
            PD+I+NPH +PSRMT+  L+E +A K G L G+F   T F  S                V
Sbjct: 885  PDIIMNPHGYPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSK---------------V 929

Query: 943  DELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMD 1002
             ++ E L   G+NY G + + SG+ G  L   I+ GPVYYQ+L+HMV DK   R+ G   
Sbjct: 930  KDVCEDLIRYGYNYQGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRA 989

Query: 1003 QITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTA 1062
             +TRQP +GR R GG+R GEMERD L+ +GA+ LL +RL   SD    DVC  CG +  +
Sbjct: 990  VLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLGYS 1049

Query: 1063 TFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKIT 1122
             +                        CH C++S  + ++ +PY  + L  EL +MNI   
Sbjct: 1050 GW------------------------CHYCKSSCHVSSLKIPYACKLLFQELQSMNIIPR 1085

Query: 1123 LQL 1125
            L+L
Sbjct: 1086 LKL 1088


>gi|225464023|ref|XP_002265454.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Vitis
            vinifera]
          Length = 1142

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 330/1211 (27%), Positives = 532/1211 (43%), Gaps = 185/1211 (15%)

Query: 8    DFEPLRELVRHHIESFDYMLD-------------------------------------EG 30
            +F  +R LV+ H++SF+Y +                                      +G
Sbjct: 27   EFLKVRGLVKQHLDSFNYFVKTDIKKIVRANDRIVSSVDPSIYLRFKDVRIGEPSITVDG 86

Query: 31   LSEMFD--HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN-----FGQFPVMLKTRRC 83
            +SE  +   CR + ++Y   ++ ++E+     GS V + R        G+ P+ML++  C
Sbjct: 87   ISEKLNPHTCRLSDMTYAAPILVNIEYI---TGSHVQKTRVEKNDVVIGRMPIMLRSCCC 143

Query: 84   HLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYT 143
             L   D  +L  L E   + GGYF++ G E+V   +++ +Q   +S  R      ++G  
Sbjct: 144  VLYKKDEAELARLGECPLDPGGYFVVKGTEKV---ILIQEQ---LSKNRIIIDTDKKGNI 197

Query: 144  DKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--LPVGIVLKALVDTNDLEI 201
            + +V          S   K   ++    +   WLQ  ++   +P+ IV+KA+   +D E+
Sbjct: 198  NASVT-----SSTESTKSKTVIVME---KEKIWLQLNQFTSKIPIMIVMKAMGMESDQEV 249

Query: 202  FNHLTCCYDEKYKKEKGAVG-SPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
                              VG +P  S  +   + E     + T+ Q L+ +    + +  
Sbjct: 250  VQ---------------MVGRNPRYSALLLPSMEECASHGIYTQQQALEFLERKVKKLPF 294

Query: 261  GLQSESYYAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
               S         ++RD    ++    N+   K   +  ML+++   + +    D+ D +
Sbjct: 295  YNPSLEKEGRGMAILRDTFIANVPVRQNNFRPKCLYVAVMLRRMMDAILNKDAMDDKDYV 354

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G LI++  ++  +  + + KK I D I     +   F+ +   + + ++   
Sbjct: 355  GNKRLELSGQLISLLFEDLFKTMISEVKKTI-DAILAKPSRSSRFDFSQCLRFIVRD--- 410

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   +E  L TG    +       R G +    RL+++  +     +     F   R  
Sbjct: 411  SITVGLERTLSTGNWDVKRFR--MHRKGMSQVVARLSYIGSLGHMTKI--SPQFEKSRKV 466

Query: 437  S-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV 495
            S  R L P  WG LCP  TP+GE CGL+ ++     V +  +    I     +    L +
Sbjct: 467  SGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEESPLISLCYSLGVEDLEL 526

Query: 496  LIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDD 555
            L G  +            P    ++ +G ++G       ++    LR+L+ +        
Sbjct: 527  LSGEEL----------HTPNSFLIIFNGLILG--KHRRPQRFANALRKLRRAG------- 567

Query: 556  LEVG-YVPLSLGGAYPGLYLFTSPPKFVRPV----RNISLPSEE--SQNIELIGPFEQVF 608
             ++G +V + +      +Y+ +   +  RPV    +  S   E    + I+ +  F+   
Sbjct: 568  -KIGEFVSVFVNEKQHCVYIASDGGRVCRPVVIADKGKSRIKEHHMKELIDGVRTFDDFL 626

Query: 609  MEIRCPDGGDGGRRNAFPATHE----------EIHPTGMLSVVANLTPYSDHNQSPRNMY 658
             +            NA  A +E          EI P  +L V A L P+  HNQSPRN Y
Sbjct: 627  RDGLIEYLDVNEENNALIALYEADAKPETTHIEIEPFTILGVCAGLIPFPHHNQSPRNTY 686

Query: 659  QCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLA 718
            QC M KQ MG        R D  LY L  PQ P++ T T    G D+   G NA VAV++
Sbjct: 687  QCAMGKQAMGNIAYNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMS 746

Query: 719  YTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVDRGQKLFRRNKDAKSLHS 777
            Y+GYD+EDA+++NKSS+DRG     + +    ++   + N  DR  +  +   DA+ +  
Sbjct: 747  YSGYDIEDAIVMNKSSLDRGFGRCIVMKKFSAVNQRYENNASDRIVRPLKVGHDAERMQ- 805

Query: 778  VIDSDGLPYVGQMIHPGEPYC--------------------SIYDKTTNSWRTNSRKGSE 817
            ++D DGL   G++I P + Y                     S Y  +  +++       E
Sbjct: 806  ILDDDGLAAPGEIIKPNDIYINKESPIITKGPLISPVGLPDSAYKPSRQTFKGPE---GE 862

Query: 818  SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
            +  VD VA+    + NL  K  I  RHTR P +GDKFSSRHGQKGVC  +    D PFS 
Sbjct: 863  ASVVDRVALCSDKNSNLCIKFLI--RHTRRPEVGDKFSSRHGQKGVCGTIIQQEDFPFSE 920

Query: 878  VTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDE 937
              G+ PDLI+NPH FPSRMT+  ++E +  K G   G+F   + F       + D     
Sbjct: 921  -RGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEP--SGHADKVETI 977

Query: 938  SKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRS 997
            SK+LV          GF+Y G + +YSG+ G  L   IF+GP+YYQ+L+HMV DK   R 
Sbjct: 978  SKTLVKH--------GFSYSGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARG 1029

Query: 998  TGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCG 1057
            +G    +TRQP +GR R GG+R GEMERD L+A+GA+ L+ +RL   SD     VC +CG
Sbjct: 1030 SGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCG 1089

Query: 1058 SVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAM 1117
              L   + H  K  I                C  C+    + T+ +PY  + L  EL AM
Sbjct: 1090 --LLGYYNHKLKIGI----------------CSTCKNGDNISTMKLPYACKLLFQELQAM 1131

Query: 1118 NIKITLQLGDG 1128
            N+   L+L + 
Sbjct: 1132 NVVPRLKLTEA 1142


>gi|328853924|gb|EGG03059.1| hypothetical protein MELLADRAFT_49581 [Melampsora larici-populina
            98AG31]
          Length = 1135

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 335/1213 (27%), Positives = 520/1213 (42%), Gaps = 206/1213 (16%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMF--------------------------------- 35
            F  ++ LV+ HI+SF+Y +D  L  +                                  
Sbjct: 28   FLKVKGLVKQHIDSFNYFVDVELKAILRANATVVSDVDPNFHLTYLDINVGEPCRLDTGS 87

Query: 36   --------DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQG 87
                      CR   I+Y+  +   V  QY      V+ +    G+ P+ML++ +C L  
Sbjct: 88   ATNKRITPHECRLRDITYSAPI--SVTIQYTKGNKRVLSKGIPIGRMPIMLRSNKCVLTN 145

Query: 88   ADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAV 147
                +L  + E   + GGYF++ G E+V    IL ++    + +     D R+G T  A 
Sbjct: 146  KSDAELAKMTECPLDPGGYFVVKGTEKV----ILVQEQLSKNRILIE-TDSRKG-TIMAS 199

Query: 148  VIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTC 207
            V     + +S       Y++  + ++       +  +PV I LKA   T+D E+   L C
Sbjct: 200  VTSSTHERKSKT-----YVVTKNSKVYLKHNSIQEEIPVVIALKAYGITSDNEVV-QLVC 253

Query: 208  CYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQ---- 263
              ++ Y+                I + +  +  + T+ Q L++IG+  + +  G      
Sbjct: 254  GNNDDYRST------------FSICIEQCHEAGIYTQKQALEYIGKSVKVMKKGPMVTVK 301

Query: 264  ---SESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQE 320
               SE    V  TV+  ++     +   K   L  M +++   + +  + D+ D + N+ 
Sbjct: 302  RPLSEEALEVLSTVVLAHVPAENMNLQPKALYLAVMARRVIQAMANPKLVDDRDYVGNKR 361

Query: 321  ILLPGHLITIYLKEKLEDWLRKGKKLIQDEIE------NNGKKFDFFNLANIKKVMEKNP 374
            + L G L+++      ED  +K    ++  I+      N   +FD  N   +        
Sbjct: 362  LELAGQLLSLLF----EDLFKKFNTDLKMNIDKILKKPNRTTEFDAINQFRMH------- 410

Query: 375  SKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLR 434
               I       + TG  + +      +RAG T    RL+++  +     +   + F   R
Sbjct: 411  GDHISHGFIRAISTGNWSIKRFK--MERAGITHVLSRLSYISALGMMTRI--SSQFEKTR 466

Query: 435  TTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
              S  R L P  WG LCP  TP+GE CGL+ ++     + +         D  +     +
Sbjct: 467  KVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITT---------DVDEEPIWNV 517

Query: 494  RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSE-IEKVVAHLRRL-KVSAASV 551
               IG   I S+       P   + V ++G ++G+  S E   KV    RR  +VS    
Sbjct: 518  AYTIGCEDISSVTGTELYLPRHYI-VFINGNILGLSRSPERFVKVFRQFRRAGQVSE--- 573

Query: 552  IPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP--VRNISLPSEESQNIELIGPFEQVFM 609
                    +V + +      + + T   +  RP  + +  +P   S +I+L+   +  F 
Sbjct: 574  --------FVSIYMNSDQQTVNIATDGGRICRPMIIVDHGVPRVTSSHIQLLKENKMCFD 625

Query: 610  E---------IRCPDGGDGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSDH 650
            +         + C +  D     +F A          TH EI P  +L  VA L PY  H
Sbjct: 626  DFLTAGLIEYLDCNEEND-----SFIALYEEDVDQFTTHLEIEPFTLLGAVAGLIPYPHH 680

Query: 651  NQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGT 710
            NQSPRN YQC M KQ +G        R D  LY +  P  P+VRT T    G D+ P G 
Sbjct: 681  NQSPRNTYQCAMGKQAIGAIAYNQLHRIDTLLYLMVYPHHPMVRTKTIELVGYDKLPAGQ 740

Query: 711  NAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNK 770
            NA VAV++Y+GYD+EDA+ILNK+S+DRG    Q+++  T  +    N          R+ 
Sbjct: 741  NATVAVMSYSGYDIEDALILNKASLDRGFGRCQVFRKATAMIKRYPNGTYDRIADPPRDT 800

Query: 771  DAKSLHSV--IDSDGLPYVGQMIHPGEPYCSIYD-------------KTTNSWRTN--SR 813
            D + L      D  G+  VG  +  G  Y +                 T  +W     + 
Sbjct: 801  DGQILEKWKPCDEGGVADVGMKVFSGNVYVNKQTPSNANDNSVAGGAATVTAWNNTPMTY 860

Query: 814  KGSESVFVDYVAV-DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDID 872
            +G+   ++D V V D ++ + L     +  R TR P +GDKFSSRHGQKGVC  +    D
Sbjct: 861  RGTIPSYIDKVLVTDTESDQTL---VKVLLRQTRRPELGDKFSSRHGQKGVCGLIVQQED 917

Query: 873  MPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGD 932
            MPF+   G  PD+I+NPH FPSRMT+  +LE ++ K G L G     T F        G 
Sbjct: 918  MPFND-HGSCPDIIMNPHGFPSRMTVGKMLELLSGKAGVLRGTVEYGTAFG-------GS 969

Query: 933  TGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDK 992
               + SK L++         G++Y G + L SG+ G  L   +F+GP+YYQ+L+HMV DK
Sbjct: 970  KAVEMSKILIEH--------GYSYLGKDYLTSGITGQALEHYVFMGPIYYQKLKHMVLDK 1021

Query: 993  FQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADV 1052
               R+ G    +TRQP +GR R GG+R GEMERD L+AHGA+ LL +RL   SD    DV
Sbjct: 1022 MHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIAHGASQLLLERLMISSDAFELDV 1081

Query: 1053 CSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAA 1112
            C  CG +  + +                        C  C+  K +  + +PY  + L  
Sbjct: 1082 CQDCGFMGYSGW------------------------CVRCKNGKSVTKITIPYACKLLFQ 1117

Query: 1113 ELAAMNIKITLQL 1125
            EL AMNI   L L
Sbjct: 1118 ELMAMNIAPRLVL 1130


>gi|221056432|ref|XP_002259354.1| dna-directed rna polymerase, beta subunit [Plasmodium knowlesi strain
            H]
 gi|193809425|emb|CAQ40127.1| dna-directed rna polymerase, beta subunit,putative [Plasmodium
            knowlesi strain H]
          Length = 1539

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 227/578 (39%), Positives = 306/578 (52%), Gaps = 94/578 (16%)

Query: 631  EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQT 690
            E+  T  LS + +LTP+SDHNQSPRN+YQCQM KQTMG     + +    K+Y + TPQ 
Sbjct: 963  ELKETSFLSFLGSLTPFSDHNQSPRNIYQCQMLKQTMGIQSLNMMYTFTNKIYRMITPQY 1022

Query: 691  PIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETI 750
            P+V T  Y  YG+D +P+GTNA+VA+LAYTGYDMEDA+I+NKSS +RG+    IY+T  I
Sbjct: 1023 PLVVTRDYELYGVDNFPSGTNAVVAILAYTGYDMEDALIINKSSAERGIFRTHIYKTIII 1082

Query: 751  DLSDDGNKVD--RGQKLFRRNKDA---------------------KSLHSVIDSDGLPYV 787
            DL  +    D   G  +   NK+A                     + +   ++ DGLP V
Sbjct: 1083 DLKKNHGAGDFALGNNVRYTNKNAGTNATSANSTSTAKNNLKFQYEHMGKFLNKDGLPRV 1142

Query: 788  GQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRN 847
             Q +    P  S  +K +        K     +VD V  + K++KN  Q   IR R TR 
Sbjct: 1143 QQKMVELNPLYSYVNKASELTVYEKFKEHGEYYVDCVT-NYKSTKN--QIGIIRLRTTRP 1199

Query: 848  PIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAA 907
            P++GDKF+SRHGQKGV S+L+P  DMPFS  +G+ PD+I NPH  PSRMTI ML+ES+  
Sbjct: 1200 PLVGDKFASRHGQKGVVSRLFPHEDMPFSE-SGIVPDVIFNPHGIPSRMTIGMLIESICG 1258

Query: 908  KGGSLHGKFMDATP----------------------FANSVKKTNGDTGTDESKSL---- 941
            K   ++GK +DATP                      F   VK+   + G D S       
Sbjct: 1259 KAACMYGKRIDATPFRKYTKQKSFNNEWIDNCGVKGFLEQVKQGKNEDGKDSSSHAPGEE 1318

Query: 942  -------------------------------VDELGEMLRTCGFNYHGVEVLYSGVYGTE 970
                                           +D   ++L   G++Y+G E+LYSG+YG  
Sbjct: 1319 VGHSHKGKKKNDIPKGETPKGEKNNITYDEKIDYFAKLLLNKGYDYYGTELLYSGIYGVP 1378

Query: 971  LTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLA 1030
            L   IF G +YYQRLRHM  DK QVR TG +  +T QP+KG+K+ GGIR GEMERD L++
Sbjct: 1379 LQAHIFFGVIYYQRLRHMAYDKAQVRRTGPICNLTHQPLKGKKKHGGIRLGEMERDGLIS 1438

Query: 1031 HGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAI---REIGGLPPARAPKKV 1087
            HG ++++++R    SD H   VC  CG +L+          +   R IGG       K  
Sbjct: 1439 HGCSFIINERFLINSDGHECFVCPQCGLILSPIMQFTCSGEMVKGRSIGG-----RSKVA 1493

Query: 1088 TCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
             C +C  S   + V +PYV RYL  EL  +NI I L +
Sbjct: 1494 VCKSCGVS--CKIVYVPYVLRYLLNELICLNITIRLNI 1529



 Score =  116 bits (290), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 122/235 (51%), Gaps = 27/235 (11%)

Query: 385 MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPE 444
             KTG ++++  +  QQR+G+ + A+ +N LRFI+ FRA+HRG  F  ++  S RKLL E
Sbjct: 573 FFKTGNISSEN-IGYQQRSGWVIGADEINSLRFITNFRAIHRGCFFQEVKVLSPRKLLGE 631

Query: 445 SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
           +WGF+CPVHTPDG PCGLLNH++    V   ++S  N      ++  + ++ + V +  +
Sbjct: 632 AWGFICPVHTPDGSPCGLLNHLSQFSYV---HNSASNESHKLNIKLYLKKIGVNVNLDDT 688

Query: 505 LPKLVKSGPPAV-----LSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEV- 558
                 SG P +     + +L+D   +  I   +  +VV  L+  K      +    E+ 
Sbjct: 689 ------SGIPTIYEDQTIPILVDSVPITYISEQDFNRVVYKLKYAKNHNLYNLKAYFEIN 742

Query: 559 GYV--PLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEI 611
            Y+  PL +      + + T P + +RP+ N+ +       IE I P  Q ++ I
Sbjct: 743 AYLNEPLLMD----SIIINTFPGRLIRPLFNLKMKC-----IEYISPAYQPYVAI 788



 Score = 48.9 bits (115), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 67/317 (21%), Positives = 125/317 (39%), Gaps = 54/317 (17%)

Query: 38  CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
           C+ +  +Y G++   +  +  D    ++    + G  PVM+ +  C+L     + L    
Sbjct: 163 CKLSARTYEGEITLKINRKTNDE---IISTTVSAGTIPVMVLSNLCNLSSLSKKMLPQKG 219

Query: 98  EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
           E+ + +GG+F+++G  +V R VI PK N  +        D      +  V + C+  D S
Sbjct: 220 EDESLLGGFFVISGHLKVIRYVIHPKYNTIL------LND------ENKVHMNCLLNDNS 267

Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEY-----LLPVGIVLKALVDTNDLEIFNHLTCCYDEK 212
                +Y       +  F+  G  Y     ++P+ I+L  L                   
Sbjct: 268 -----VYVNFLSCPKFDFFTYGARYQNSLMVVPLHIILLLLSPIKKKSYL---------- 312

Query: 213 YKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESY----- 267
           + K K  + +      VK I   +Q + +   L   + + E +   +  L + SY     
Sbjct: 313 FNKMKMGIKN---ENAVKYIEQYIQSIFMKNGLN-EKEVFEKYN--LKYLGNSSYFRRGI 366

Query: 268 --YAVA------ETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQ 319
             Y VA      + ++R  I  H+   ++KF  +  M + L           N DSL+N 
Sbjct: 367 FRYNVAPGERKGKIILRYAILPHIQSYSEKFETICMMFKTLIFSKFKLMAKINKDSLENH 426

Query: 320 EILLPGHLITIYLKEKL 336
            +    HL++  LKE++
Sbjct: 427 AVTTCSHLLSNLLKEQI 443


>gi|193599220|ref|XP_001950634.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2
            [Acyrthosiphon pisum]
          Length = 1112

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 325/1154 (28%), Positives = 512/1154 (44%), Gaps = 196/1154 (16%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR   ++Y   +  D+E  Y+ +G   +R+ F  G+ P+ML++ RC L      +L  +K
Sbjct: 84   CRLRDLTYCAPIYVDIE--YVKSGMKYLRKGFIIGRLPIMLRSNRCCLYQKSDAELAKMK 141

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            E   + GGYFI+ G E+V      P +N  +       +D     T + +     +K ++
Sbjct: 142  ECIYDSGGYFIVKGTEKVILMQEQPAKNKILVE-----KDSNGVPTVQVMSSTVDKKSKT 196

Query: 158  SVTLK--LYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
            ++  K  L Y+ + ++         E  +P  I +KAL   +D  I              
Sbjct: 197  NIIFKKNLIYVCHNAL---------EENIPFVIFMKALGVCSDQLILQ------------ 235

Query: 216  EKGAVGSPL-VSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETV 274
                VG+   +  ++     E   L++ T+ Q L+ IG+  + +  G  SE Y +   T 
Sbjct: 236  ---MVGTEFAIMNQMYPCFLEGSKLNIYTQKQALRFIGDRIKKM--GFSSEDYDSRVITE 290

Query: 275  IRDY----IFVHLNDNNDKFNL----LIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGH 326
            + D+    I  H+   N  +++       M+++L   + +  + D+ D   N+ + LPG 
Sbjct: 291  VHDFLSTVILAHIPVTNTNYHMKAIYTSIMVRRLIFSLSNPDLFDSKDYYGNKCLDLPGS 350

Query: 327  LITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIE--- 383
             +++   +                     K+F F     +K V +KN  K   T  +   
Sbjct: 351  FLSLLFDDTF-------------------KRFTF----ELKSVADKNIPKVKATPFDIIK 387

Query: 384  -----TMLKTGRLATQTG-----LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
                 T+      A QTG         +R G T    RL++L  I     V+  + F   
Sbjct: 388  YIRTDTITNALVFAIQTGNWSIKRFRMERHGVTQVLTRLSYLSAIGMMTRVN--SQFEKS 445

Query: 434  RTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSI 492
            R  S  R L P  +G LCP  TP+GE CGL+ +++    V +           S+   ++
Sbjct: 446  RKVSGPRSLQPSQFGMLCPSDTPEGEACGLIKNISLLAHVTTE----------SEDDDAV 495

Query: 493  LRVLIGVGMIP-SLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV 551
            L++ + +G+ P  L  +       +  ++ +G ++G   +++    V   RR +      
Sbjct: 496  LQLALNLGVEPVGLYSVDDLHEDYMYLIIFNGNIIG--STNKCIDFVDKFRRCRRKG--- 550

Query: 552  IPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP----------VRNISLPSEESQNIELI 601
                +   ++ + +   +  +Y+ +   +  RP          + N  +   +       
Sbjct: 551  ----IFSKFISIYISERHKCIYINSGDGRLCRPYLVVENGQPLLTNAHIDDLKRGYCTFQ 606

Query: 602  GPFEQVFMEIRCPDGGDG-----GRRNAFP-ATHEEIHPTGMLSVVANLTPYSDHNQSPR 655
               +Q  +E    D  +            P  TH E+ P  +L + A++ P+  HNQSPR
Sbjct: 607  DFIDQSLIEFIDVDEENNCLIAYNEEKIVPETTHMEMAPFSILGICASVIPFPHHNQSPR 666

Query: 656  NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
            N YQC M KQ +G      + R D   Y+L     P+V +        D+ P G NA +A
Sbjct: 667  NTYQCAMGKQAIGTIALNYQHRIDTLQYNLWYTHIPMVHSKAVPMINYDKLPAGQNATIA 726

Query: 716  VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DRGQKLFRRNKDAKS 774
            V++Y+GYD+EDA+ILNK+SVDRG   G  ++     L    N++ D  Q     N   K 
Sbjct: 727  VMSYSGYDIEDAIILNKASVDRGFGRGGTFRNSKCFLRHYPNQMMDSIQGPIIDNATKKP 786

Query: 775  L--HSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR------------------- 813
            +  H  +++DG+  +GQ          ++DK     +   +                   
Sbjct: 787  IYKHRALENDGIAAIGQ---------PVFDKQVTINKATPKTITVEDVGGDRGFKETPLY 837

Query: 814  -KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDID 872
             KG +  +VD V +   NS     K N  FR  R P IGDKFSSRHGQKGV   +    D
Sbjct: 838  YKGYDPSYVDKVMI-TSNSDCFLIKEN--FRQPRRPEIGDKFSSRHGQKGVVGLIVDQED 894

Query: 873  MPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGD 932
            MPF+ V G+ PDLI+NPH FPSRMT+  L+E +A K G L GKF D + F        G 
Sbjct: 895  MPFNEV-GICPDLIMNPHGFPSRMTVGKLIELLAGKAGVLEGKFQDGSAFG-------GA 946

Query: 933  TGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDK 992
            T TD S  L        +   +NY G +VLY G+ G  +   I+ GPV+YQRL+HMV+DK
Sbjct: 947  TVTDISNEL--------QKHNYNYLGKDVLYCGIDGRPMEAYIYSGPVFYQRLKHMVADK 998

Query: 993  FQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADV 1052
               RS G    +TRQP +GR + GG+R GEMERD L+A+GA+ L+ +RL   SD    DV
Sbjct: 999  IHARSRGPRVLLTRQPTEGRSKDGGLRMGEMERDCLIAYGASMLIIERLMLSSDVVEMDV 1058

Query: 1053 CSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAA 1112
            C LCG    + +                        CH CQ S  +  + MPY  + L  
Sbjct: 1059 CKLCGLFSYSGW------------------------CHMCQKSNSVCRIKMPYACKLLFQ 1094

Query: 1113 ELAAMNI--KITLQ 1124
            EL AM+I  KI+L+
Sbjct: 1095 ELQAMSIVPKISLK 1108


>gi|380094948|emb|CCC07450.1| unnamed protein product [Sordaria macrospora k-hell]
          Length = 1150

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 323/1200 (26%), Positives = 533/1200 (44%), Gaps = 174/1200 (14%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMF--------------------------------- 35
            F  ++ LV+ HI+S++Y ++E + ++                                  
Sbjct: 38   FLKVKGLVKQHIDSYNYFVNEEIKDIVKANRVVRSDQDPNFWLEFRDIRVGMPTRTEDGE 97

Query: 36   -----DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADS 90
                 + CR   ++Y   +  +V+  Y    S +VR+     + PVMLK+ +C+L GA +
Sbjct: 98   QVQSRNPCRLRDLTYAAPV--EVDIAYTRDKSVIVRKNIPLCRIPVMLKSAKCYLNGATN 155

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
             ++    E   + GGYF++ G E+V    IL ++    + +     ++  G         
Sbjct: 156  AQMEVFNECPLDPGGYFVIGGTEKV----ILIQEQLSKNRIIVEADEKTGGVMASVTSST 211

Query: 151  CVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYD 210
              RK ++ V LK         R+          +P+ IVLKA    +D +I   L C  D
Sbjct: 212  HERKSKTYVVLK-------KDRIVLQHNTLSEPIPIVIVLKAFGGLSDNDII-ELVCGGD 263

Query: 211  EKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ-----PVIDGLQSE 265
             +Y+ +              I   E     + T+ Q L+++G   +     P        
Sbjct: 264  ARYQDD------------FLINFDEAGRAGVYTQQQALEYVGARVKMGGNRPKFGAAPRR 311

Query: 266  SYYAVAETVIRDYIFVHLN----DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEI 321
            ++       + + +  H+     D   K   +  M++++     +  + D+ D + N+ +
Sbjct: 312  NHAEEGLDALANLVIAHVTVEGLDFYPKAVYIAMMVRRVLMAAQNPKLVDDRDFVGNKRL 371

Query: 322  LLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTS 381
             L G LI++      ED  +K    ++  I+N  KK +  +  +    +  N    I   
Sbjct: 372  ELAGQLISLLF----EDLFKKFISDVKYNIDNFFKKPNRTSTYDPHGAIMAN-GHYISHG 426

Query: 382  IETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRK 440
            +   +++G    +   ++  RAG T    RL+++  +     +   + F   R  S  R 
Sbjct: 427  LNRAIQSGNWTVKR-FNMN-RAGITHVLSRLSYIAALGMMTRI--SSQFEKTRKVSGPRA 482

Query: 441  LLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVG 500
            L P  WG LC   TP+GE CGL+ ++     + +      N+ +   ++  I      VG
Sbjct: 483  LQPSQWGMLCTSDTPEGEACGLVKNLALMTHITT------NVPE-EPVKKMIFAADESVG 535

Query: 501  MIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGY 560
             I            + + + L+G    V  + E ++  A  R L+     V P      +
Sbjct: 536  PIREYTGTEMHSKGSYI-IHLNGTPFAV--TREPKRFAARFRTLR-RRGWVSP------F 585

Query: 561  VPLSLGGAYPGLYLFTSPPKFVRP---VRNIS--LPSEESQNIELIGPFEQVFMEIRCPD 615
            V + +   +  +++ T   +  RP   V+N    L +E  + ++L       F+     +
Sbjct: 586  VSIHINEHFSAVHIATDEGRICRPYIIVKNGKSMLKAEHLKMLQLGQATFDTFLTSGVVE 645

Query: 616  GGDGGRRN-----------AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAK 664
              D    N               TH EI P  +L  VA L P+  HNQSPRN YQC M K
Sbjct: 646  YLDVNEENDTLVALQEDQITNSTTHMEIEPFTILGAVAGLIPFPHHNQSPRNTYQCAMGK 705

Query: 665  QTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDM 724
            Q +G        R D  LY L  PQ P+V T T      D+ P G NA V V++Y+GYD+
Sbjct: 706  QAIGAIAYNQFNRIDTLLYTLVYPQRPMVITKTIQLIHYDKLPAGQNATVVVMSYSGYDI 765

Query: 725  EDAMILNKSSVDRGMCHGQIYQTETIDLSDDGN-KVDRGQKLFRRNKDAK-SLHSVIDSD 782
            EDA++LNK+S+DRG    Q+++  T +L    N + DR   + +   D   + H+++D+D
Sbjct: 766  EDALVLNKASLDRGFGRCQVFRKYTAELQGYTNGRRDRVGGIMKDEDDKPIAKHAILDAD 825

Query: 783  GLPYVGQMIHPGE-------PYCSIY-----DKTTNSWR---TNSRKGSESVFVDYVAVD 827
            GL  VG  +  G+       P   I      D+ ++ +R   TN R  S+   +D V + 
Sbjct: 826  GLAQVGSKVESGQTMIKKETPLDQISTGIAGDRGSDDYRDASTNYRI-SDPAIIDKVMIS 884

Query: 828  MKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLII 887
            +   +N  +   ++ R TR P +GDKFSSRHGQKGV   +  + DMPFS   G+RPD+I+
Sbjct: 885  VNEREN--KLIKVQTRQTRRPELGDKFSSRHGQKGVVGIIVNEEDMPFSD-KGLRPDIIM 941

Query: 888  NPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGE 947
            NPH FPSRMT+  L E +  K   + G+      F ++ +              V+ +G+
Sbjct: 942  NPHGFPSRMTVGKLFECLTGKASVIAGE--KDYGFGDAFR-----------SHPVESMGQ 988

Query: 948  MLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQ 1007
             L   GF++ G +   SG+ G  +   I+ GP++YQRL+HMV DK   RS G    +TRQ
Sbjct: 989  ALIDHGFSWEGKDYFTSGITGEPMEAYIYNGPIFYQRLKHMVQDKMHSRSRGPRAILTRQ 1048

Query: 1008 PIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHP 1067
            P +GR R GG+R GEMERD L+A+GA+ LL +RL   SD    DVC  CG      +   
Sbjct: 1049 PTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLMISSDGTELDVCQECGLFGYKGY--- 1105

Query: 1068 QKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
                                 C+AC++++ ++ + MPY  + L  EL +MN+ + L+L D
Sbjct: 1106 ---------------------CNACKSTRNVKQMTMPYACKLLVQELISMNVGVKLKLED 1144


>gi|307182559|gb|EFN69752.1| DNA-directed RNA polymerase II subunit RPB2 [Camponotus floridanus]
          Length = 1178

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 326/1150 (28%), Positives = 513/1150 (44%), Gaps = 142/1150 (12%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   V    ++   G+ P+ML+++ C L G   
Sbjct: 112  MPNEARLRNLTYSAPLYVDITKTIVKDGEDPVETQHQKTFIGKIPIMLRSKYCLLAGLSD 171

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  Y  KA +  
Sbjct: 172  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKYAY--KAEIRS 226

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  +      +     G+  +         +P+ +V +AL    D +
Sbjct: 227  CLEHSSRPTSTLWINMMAKSGASIKKSAIGQRIIAIIPYIKQEIPIMVVFRALGFVADRD 286

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEH-FQPVI 259
            I  H+   +D+           P + E VK  L E     +  +   L  IG    +P  
Sbjct: 287  ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGTRGAKP-- 331

Query: 260  DGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
             G+  E     A  +++  +  H+  ++     K   L +M+ +L S        D+ D 
Sbjct: 332  -GVTKEKRIKYAREILQKEMLPHVGISDFCETKKAYFLGYMVHRLLSASLGRRELDDRDH 390

Query: 316  LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPS 375
              N+ + L G L+    +   ++ L K  +L   +  + GK F+   LA IK       +
Sbjct: 391  YGNKRLDLAGPLLAFLFRGLFKN-LMKEVRLYAQKFIDRGKDFNL-ELA-IK-------T 440

Query: 376  KQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
            K I   +   L TG    Q     Q RAG +    RL F   +S  R V+      G + 
Sbjct: 441  KIITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KL 498

Query: 436  TSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV 495
               R+L    WG LCP  TP+G   GL+ ++     ++                + IL  
Sbjct: 499  AKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEF 547

Query: 496  LIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAA 549
            L    M  +L ++  S       + ++G  VG+    + ++++A LR+L+      VS  
Sbjct: 548  LEEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPDQLMATLRKLRRQMDIIVSEV 604

Query: 550  SVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN----IELIGP-- 603
            S+I D  +      +  G      L       +   R+I +  E   N     EL+G   
Sbjct: 605  SMIRDIRDREIRIYTDAGRISRPLLIVEGQNLLLKKRHIDMLKERDYNNDGWQELVGSGV 664

Query: 604  -------FEQVFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQSP 654
                    E+  M    PD     +  A+  T  H EIHP  +L V A++ P+ DHNQSP
Sbjct: 665  VEYIDTLEEETVMIAMSPDDLKQDKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSP 724

Query: 655  RNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIV 714
            RN YQ  M KQ MG  +     R D   + L  P  P+V T +       E P G N+IV
Sbjct: 725  RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIV 784

Query: 715  AVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT----ETIDLSDDGNKVDRGQKLFRRNK 770
            A+L YTGY+ ED++ILN S+V+RG      Y++    E+  + D   + ++  +L  +  
Sbjct: 785  AILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKEAESKKIGDQEEQFEKPSRLTCQGM 844

Query: 771  DAKSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSR----KG 815
               +++  +D DG+             +G+ I   E    + D TT  +         + 
Sbjct: 845  -RNAIYDKLDDDGIIAPGIRVSGDDVIIGKTITLPETDDEL-DSTTKRFTKRDASTFLRN 902

Query: 816  SESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPF 875
            SE+  VD V + + NS+   +   IR R  R P IGDKF+SRHGQKG C   +   DMPF
Sbjct: 903  SETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPF 960

Query: 876  SGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGT 935
            S   G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF ++V         
Sbjct: 961  S-CEGLTPDIIINPHAIPSRMTIGHLIECIQGKVSANKGEIGDATPFNDAVN-------- 1011

Query: 936  DESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQV 995
                  V ++  +L+  G+   G EV+Y+G  G ++  ++F+GP YYQRL+HMV DK   
Sbjct: 1012 ------VQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHS 1065

Query: 996  RSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSL 1055
            R+ G +  + RQP++GR R GG+RFGEMERD  ++HGAA  L +RL   SD +   +C+ 
Sbjct: 1066 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHICNF 1125

Query: 1056 CGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELA 1115
            CG +  A   +                      C  C+    +  + +PY  + L  EL 
Sbjct: 1126 CGLIAIANLRN------------------NTFECKGCKNKTQISQIRLPYAAKLLFQELM 1167

Query: 1116 AMNIKITLQL 1125
            AMNI   L +
Sbjct: 1168 AMNIAPRLMI 1177


>gi|403334977|gb|EJY66659.1| RNA polymerase III [Oxytricha trifallax]
          Length = 1146

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 343/1213 (28%), Positives = 539/1213 (44%), Gaps = 204/1213 (16%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSE----------------------------------- 33
            F  LR LV+ HI+S+++ L+  L E                                   
Sbjct: 43   FLRLRGLVKAHIDSYNHFLNVDLKEIIRANQFITSDIDPAFYLKFTDIHVGMPKIEEDFE 102

Query: 34   ----MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
                M   CR   ++Y+  +   VE +Y       ++     G+ P+ML    C L G  
Sbjct: 103  QHNLMPHECRIRDLTYSAPIY--VEIEYTKGDRIYLKNEVLIGRMPMMLGASNCWLNGMS 160

Query: 90   SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFR-DRREGYTDKAVV 148
             ++L S+KE   +  GYFI+ G+E+V   +++ +Q   MS  R     D ++    +   
Sbjct: 161  HERLASIKECPYDPRGYFIIKGVEKV---LLIQEQ---MSKNRIIIELDSKQNVCAQVTS 214

Query: 149  IRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--LPVGIVLKALVDTNDLEIFNHLT 206
                RK ++++  K            F+L+   +   +PV +  KA+    D EI   + 
Sbjct: 215  STYERKSRTTIVHK---------NDKFYLKHNTFTDDIPVVVAFKAMGMETDQEIAQIIG 265

Query: 207  CCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSES 266
               + KY             + + + L E   L++ ++ Q L+ I    +  +   Q   
Sbjct: 266  T--EAKY------------LDGLALSLQEASQLNILSQAQALEFIANKVKS-LKSFQGRP 310

Query: 267  YYAVAET--VIRDYIFVHLNDNND-----KFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQ 319
               + E   ++ + +  H+  +       K   L  M++++   V   S  D+ D   N+
Sbjct: 311  KTKLEEARDILTNVVLAHIPMSAHLPYFAKCRYLGMMIRRIIEAVHDPSKLDDKDYYGNK 370

Query: 320  EILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIG 379
             + L G LI++  ++  + +    KK I D +    KK  F  L  IK          I 
Sbjct: 371  RLELSGQLISLLFEDLFKKFQFDLKKQI-DIMLVKQKKEKFDALTCIK-------PDTIT 422

Query: 380  TSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-V 438
              +E  + +G  + +      +R   T    RL+++  +     ++  + F   R  S  
Sbjct: 423  QGLEMSISSGNWSLKRFK--MERKSVTQVLSRLSYIAALGMMARIN--SQFEKTRKISGP 478

Query: 439  RKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIG 498
            R L P  WG +CP  TP+GE CGL+ ++  T  V +  DS             +LR+ I 
Sbjct: 479  RALQPSHWGIICPSDTPEGESCGLVKNLALTTHVTT--DSP---------EKPLLRICID 527

Query: 499  VGMIPSLPKLVKSGPPAVLS-----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIP 553
            +GM          G   + S     V L+G+ +GV+   +  K V + R L+        
Sbjct: 528  LGM----EDAALLGGDELYSKNHFLVFLNGQPIGVV--KQPHKFVRNFRFLRKRGRVQ-- 579

Query: 554  DDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNIS-----LPSEESQNIEL-IGPFEQV 607
                  +V + +      + + +   + VRP+  I      L   + Q++ L +  F   
Sbjct: 580  -----EFVSVYMSEQQNTINIASDAGRLVRPLIVIERGRPKLQQSQIQDLILGLRDFNDF 634

Query: 608  FMEIRCPDGGDGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNM 657
              E            NA  A          TH EI P  +L  VA L PY  HNQSPRN 
Sbjct: 635  LREGLLEYLDVNEENNALIALNENALTQAHTHMEIDPLTILGCVAGLIPYPHHNQSPRNT 694

Query: 658  YQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVL 717
            YQC M KQ +G        R D  L+ L  PQ P+V+T T      +E P G NA VA++
Sbjct: 695  YQCAMGKQAIGSIGLNQLNRVDTLLFLLTHPQKPLVKTKTIEIINFEELPAGQNASVAIM 754

Query: 718  AYTGYDMEDAMILNKSSVDRGMCHGQI---YQTETIDLSDDGNKV---DRGQKLFRRNKD 771
            +Y+GYD+EDA++LNK+S+DRG         YQT+    S+    +      QK  +R  +
Sbjct: 755  SYSGYDIEDAVVLNKASLDRGFARAMYIRRYQTDIKKYSNGATDIILPGVSQKDQKRAFN 814

Query: 772  AKSLHSVIDSDGLPYVGQMIHPGEPYCSIY---------------DKTTNSWRTNSR--K 814
             K  H+ +D DG+  VG+ +  G+ + + Y               D TT  +++ ++  K
Sbjct: 815  -KKFHA-LDEDGMARVGESLQNGDVFINKYTPVMGENQTGYLNEIDLTTLEYKSQAQSYK 872

Query: 815  GSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMP 874
            G+   +VD V   M ++   P    +  R +R P IGDKFSSRHGQKGV   + P  D+P
Sbjct: 873  GANPAYVDRVI--MTSTPENPFFIKMITRQSRVPEIGDKFSSRHGQKGVVGLIVPQEDLP 930

Query: 875  FSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTG 934
            FS   G  PDLI+NPH FPSRMT+  ++E ++ K G L G+F   T F+       GD  
Sbjct: 931  FSERNGWCPDLIMNPHGFPSRMTVGKMIELISGKAGVLEGEFKYGTAFS-------GDP- 982

Query: 935  TDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQ 994
                   V+E+G++L   G+++ G +VL SG+ G  L C +F GP+YYQRL+HMV DK  
Sbjct: 983  -------VEEMGKLLIKHGYSFDGKDVLMSGITGEVLPCFVFSGPIYYQRLKHMVQDKMH 1035

Query: 995  VRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCS 1054
             R+ G    +TRQP +GR R GG+R GEMERD L+ +GAA L+ +RL   SD  V  +C+
Sbjct: 1036 SRARGPKSVLTRQPTEGRSREGGLRLGEMERDCLIGYGAANLIMERLMISSDQFVVYICN 1095

Query: 1055 LCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAEL 1114
             CG      F+  +                  V C+    +  + +V MPY  + L  EL
Sbjct: 1096 RCG------FLGYEGHC---------------VYCNPHHDN--VCSVKMPYACKLLLQEL 1132

Query: 1115 AAMNIKITLQLGD 1127
             +MNI+  ++L D
Sbjct: 1133 QSMNIRAQIKLTD 1145


>gi|388858433|emb|CCF48027.1| probable DNA-directed RNA polymerase III, 130 KD subunit [Ustilago
            hordei]
          Length = 1169

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 336/1221 (27%), Positives = 521/1221 (42%), Gaps = 209/1221 (17%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMF--------------------------------- 35
            F  ++ LV+ HIES++Y +D  L  +                                  
Sbjct: 56   FLQVKGLVKQHIESYNYFVDHDLKNIIKANEKITSDIDPKFYLKYTDITVGEPRRYDGDA 115

Query: 36   -------DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGA 88
                     CR   I+Y+  +  ++E  Y   G  + R+    G+ PVML++ +C L   
Sbjct: 116  LQRPITPQECRLRDITYSAHIFVNIE--YTRGGKIIRRKNVAIGRIPVMLRSNKCVLSNK 173

Query: 89   DSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVV 148
              ++L  + E   + GGYF++ G E+V    IL ++    + +      ++   +     
Sbjct: 174  SEKELAKMSECPLDPGGYFVVKGTEKV----ILVQEQLSKNRIIVEADTKKGSVSASVTS 229

Query: 149  IRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
                RK +S V  K     +G + L      ++  +P+ +  KA+    D EI   L   
Sbjct: 230  STHERKSKSYVLTK-----HGKIFLKHNSLHED--IPIAVAFKAMGIQADREIL-QLVVG 281

Query: 209  YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQ----- 263
            +D+ YK            E   I L E   L + TR Q L +IG   +     L      
Sbjct: 282  HDDIYK------------ELFAINLEEAARLGIYTRKQALDYIGARAKASRKPLSMRRPL 329

Query: 264  SESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILL 323
            SE    V  TVI  ++ V   +   K   +  M++++   +      D+ D + N+ + L
Sbjct: 330  SEEALDVLATVIMAHVPVERLNFRPKAIYIASMVRRVLVAMQDEKKVDDRDYVGNKRLEL 389

Query: 324  PGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKK------FDFFNLANIKKVMEKNPSKQ 377
             G L+ +      ED  +K    ++  I+   KK      FD FN  +            
Sbjct: 390  AGQLLALLF----EDLFKKFNSDLKINIDKVLKKPNRTVEFDAFNQFHFN-------GDY 438

Query: 378  IGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS 437
            I       + TG  + +      +RAG T    RL+++  +     +   + F   R  S
Sbjct: 439  ITAGFVRAISTGNWSLKRFK--MERAGITHVLSRLSYIAALGMMTRI--SSQFEKTRKVS 494

Query: 438  -VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R L P  WG LCP  TP+GE CGL+ ++  T  + +         D  +   + L   
Sbjct: 495  GPRALQPSQWGMLCPSDTPEGEACGLVKNLALTTHITT---------DVEEEPIAKLAFT 545

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDL 556
            +GV  +  L       P + + V L+G V+GV  +   ++ V   RRL+   A  I +  
Sbjct: 546  LGVEDVHLLTGAELYRPDSYI-VYLNGNVLGV--TRFPQRFVMQFRRLR--RAGHISE-- 598

Query: 557  EVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC--- 613
               +V +     +  +Y+ +   +  RP+  I +     Q        +Q+   IRC   
Sbjct: 599  ---FVSIYTNSHHQTVYIASDGGRICRPL--IIVDPVTGQPRVTDSHIQQLKAGIRCFND 653

Query: 614  ------------PDGGDGG----RRNAFP--ATHEEIHPTGMLSVVANLTPYSDHNQSPR 655
                         +  D       R+  P   TH EI P  +L  VA L PY  HNQSPR
Sbjct: 654  FLHNGLLEYLDVNEENDSNIALYERDIKPRYTTHLEIEPFTILGAVAGLIPYPHHNQSPR 713

Query: 656  NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
              YQC M KQ +         R D  LY +  PQ P+V+T T    G D+ P G NA+VA
Sbjct: 714  LTYQCAMGKQAVSAIAYNQFLRIDTLLYLMVYPQQPMVKTRTIDLIGYDKLPAGQNAMVA 773

Query: 716  VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR------GQKLFRR 768
            V++++GYD+EDA++LNK+S+DRG    Q  +  +  L    N   DR       +   +R
Sbjct: 774  VMSFSGYDIEDALLLNKASLDRGFGRCQTMKKSSTILRKYPNGTHDRLADAPVDESTGKR 833

Query: 769  NKDAKSLHSVIDSDGLPYVGQMIHPGEPY------CSIYDKTTNSWRTNSRKGSESV--- 819
             K     + ++++DG+  VG+ +  G+ +       +  D ++ +    +   + SV   
Sbjct: 834  QKR----YDILEADGIAGVGERVEQGDVFVNKQTPVNANDNSSAAIMIGASNAAASVAYK 889

Query: 820  ------------FVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQL 867
                        +VD V +   +S     KA I  R TR P +GDKFSSRHGQKGVC  +
Sbjct: 890  SAPLSYKPPVSGYVDQVLITDTDSDQTLIKALI--RQTRRPELGDKFSSRHGQKGVCGLI 947

Query: 868  WPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVK 927
                DMPFS   G+ PD+I+NPH FPSRMT+  ++E ++ K G + G     T F  S  
Sbjct: 948  VNQEDMPFSD-QGINPDIIMNPHGFPSRMTVGKMIELLSGKAGVITGNLQYGTAFGGSK- 1005

Query: 928  KTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRH 987
                          V+++ ++L   G+NY G E L SG+ G  L C ++ GP+YYQRL+H
Sbjct: 1006 --------------VEDMSQILVDHGYNYGGKETLTSGITGQPLECYVYFGPIYYQRLKH 1051

Query: 988  MVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDY 1047
            MV DK   R+ G    +TRQP +GR R GG+R GEMERD L+ +GA  LL +RL   SD 
Sbjct: 1052 MVQDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGATQLLLERLMISSDA 1111

Query: 1048 HVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVF 1107
                 C  CG +    +                        C  C + K +  + +PY  
Sbjct: 1112 FTVHACQRCGLMGYNGW------------------------CPFCGSGKHVVKLTIPYGT 1147

Query: 1108 RYLAAELAAMNIKITLQLGDG 1128
            + +  EL AM +   L L D 
Sbjct: 1148 KLMLQELMAMQVVPRLILEDA 1168


>gi|25144348|ref|NP_498192.2| Protein RPC-2 [Caenorhabditis elegans]
 gi|351060666|emb|CCD68383.1| Protein RPC-2 [Caenorhabditis elegans]
          Length = 1154

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 330/1166 (28%), Positives = 525/1166 (45%), Gaps = 172/1166 (14%)

Query: 28   DEGLSEMFD-----HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRR 82
            +EGL+   D      CR   ++Y+  +  D+E  Y      V ++    G+ P+ML++ +
Sbjct: 90   EEGLNMTHDKITPQECRLRDMTYSAPISVDIE--YTRGNQRVFKKDLIIGRMPIMLRSSK 147

Query: 83   CHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGY 142
            C L+    ++L  ++E   + GGYF++ G E+V    IL ++    + +    R+  +  
Sbjct: 148  CILRDLAEEELARVQECPYDPGGYFVVKGSEKV----ILIQEQLSKNRIMVG-RNSSKEL 202

Query: 143  TDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIF 202
              + +     RK ++ VT+K       SVR           +PV I+ KA+   +D +I 
Sbjct: 203  QCEVLSSTSERKSKTYVTMKKGKY---SVRHNQLTDD----VPVSIIFKAMGVESDFDIV 255

Query: 203  NHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHI-----GEHFQP 257
            +  T  ++EKY           VS   +  L E  +  + T+ Q L ++        F P
Sbjct: 256  S--TIGHEEKY-----------VSAFAQT-LEESINAGVYTQQQALAYVTSKVKARKFTP 301

Query: 258  VIDGLQSESYYAV-------AETVIRDYIFVHLNDNNDKFNL----LIFMLQKLFSLVDH 306
                L   S   +       A   + + +  H+   +  F +    L  M ++L      
Sbjct: 302  -FGSLPGTSVSVLTPPKEHEAVDFLSNSMITHIACPDGNFKMKAIYLGLMTRRLIQTELG 360

Query: 307  TSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANI 366
             +  D+ D   N+ + L G L+++  ++  + +  + K+     I +N          +I
Sbjct: 361  ENGLDDRDFYGNKRLELAGSLLSLLFEDVFKRFNSELKR-----IADNALMKTMAAPLDI 415

Query: 367  KKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHR 426
             K M ++    I  +I   + TG    +      +R G T    RL+++  +     ++ 
Sbjct: 416  VKHMRQD---MITNTIVNAMSTGNWIIKRFR--MERLGVTQVLSRLSYISALGMMTRIN- 469

Query: 427  GASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDF 485
             ++F   R  S  R L P  WG LCP  TP+GE CGL+ ++     + +  D +      
Sbjct: 470  -STFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALISHITTDSDEK------ 522

Query: 486  SKMRTSILRVLIGVGMIPSLPKLVKS--GPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRR 543
                  +LR+L+  G +  L  +  S    P    + L+G ++G   + + E+VV  +R 
Sbjct: 523  -----PVLRLLLNSG-VEDLHNVHFSHVNKPENTLIFLNGVLIGT--AVDPERVVKAVRD 574

Query: 544  LKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP---VRNISLPSEESQNIEL 600
            L+ S        L   +V +S       +++ +   +  RP   V+N   P     +++ 
Sbjct: 575  LRRSG-------LLSEFVSVSRSLTNRSVFISSDGGRLCRPYIIVKN-GTPMLTQAHVQE 626

Query: 601  IGPFEQVFMEIRCPDG----------GDG-----GRRNAFPATHEEIHPTGMLSVVANLT 645
            +   + +F +    DG           D      GR      TH EI P  +L V A L 
Sbjct: 627  LKEGKMIFEDF-VDDGIVEYLDVNEMNDALIAVYGREIGPETTHLEIEPFTLLGVCAGLI 685

Query: 646  PYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDE 705
            PY  HNQSPRN YQC M KQ MG      + R D  +Y L  PQ P+V++ T      ++
Sbjct: 686  PYPHHNQSPRNTYQCAMGKQAMGTIAYNQQKRIDSIMYLLCYPQRPLVKSKTIELTNFEK 745

Query: 706  YPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR--G 762
             P G N I+AV++Y+GYD+EDA++LNK+S+DRG     +Y+          N+  DR  G
Sbjct: 746  LPAGANGIIAVMSYSGYDIEDALVLNKASLDRGYGRCLVYKHVKGTAKKYPNQTFDRLLG 805

Query: 763  QKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGE-------PYCSIYDKTTNSWRTNSRKG 815
              L    +     H  +D +G+ + G  I P +       P  S       S   N+  G
Sbjct: 806  PALDPNTRKPIFKHKNLDQEGIVFAGARIMPKQTIINKHMPVVSGESGPGASASANT-IG 864

Query: 816  SESVFVDYVAVDMKNSKNLPQKA---------------NIRFRHTRNPIIGDKFSSRHGQ 860
                 VDY  V +      P  A                +  R TR P +GDKFSSRHGQ
Sbjct: 865  IAGRQVDYKDVSITYKTPTPSYAERVLLTYNEDEAHLFKVLLRQTRRPELGDKFSSRHGQ 924

Query: 861  KGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDAT 920
            KGVC  +    DMPF+ + GM PD+I+NPH +PSRMT+  L+E ++ K G ++G +   T
Sbjct: 925  KGVCGLIAQQEDMPFNDL-GMVPDMIMNPHGYPSRMTVGKLMELLSGKAGVVNGTYHYGT 983

Query: 921  PFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPV 980
             F           G D+ K + +EL      CG+NY G ++L SG+ G  L+  I+ GP+
Sbjct: 984  AF-----------GGDQVKDVCEELA----ACGYNYMGKDMLTSGITGQPLSAYIYFGPI 1028

Query: 981  YYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDR 1040
            YYQ+L+HMV DK   R+ G    +TRQP +GR R GG+R GEMERD L+A+GA+ LL +R
Sbjct: 1029 YYQKLKHMVLDKMHARARGPRAALTRQPTEGRSREGGLRLGEMERDCLIAYGASMLLIER 1088

Query: 1041 LHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMET 1100
            L   SD    DVC+ CG + +  +                        C  C++SK M  
Sbjct: 1089 LMVSSDEFKVDVCTGCGVIGSKGW------------------------CQKCRSSKSMAN 1124

Query: 1101 VAMPYVFRYLAAELAAMNIKITLQLG 1126
            + +PY  + L  EL +MNI   L L 
Sbjct: 1125 IKIPYACKLLFQELQSMNIVPRLDLA 1150


>gi|167525657|ref|XP_001747163.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163774458|gb|EDQ88087.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1097

 Score =  388 bits (996), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 331/1193 (27%), Positives = 540/1193 (45%), Gaps = 193/1193 (16%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
            F  ++ LVR HIESF++ ++  + ++                                  
Sbjct: 17   FLKMKGLVRQHIESFNHFIEVDIKKILAANAKVTSDNDPNFYVRYLDIRVLPPSINEGFK 76

Query: 37   --------HCRQAKISYTGKLMADVEFQYLDAGSPVVR-ERFNFGQFPVMLKTRRCHLQG 87
                     CR    +Y G ++ D+E++    G   +R E    G+ P+ML++  C L G
Sbjct: 77   TNNTVTPMQCRLRSATYAGDIVVDLEYR---RGHETLRVENTRIGRMPIMLRSNLCVLNG 133

Query: 88   ADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAV 147
            A   K     E   + GGYF+++G E+V   +++ +Q   +S  R    + +   T    
Sbjct: 134  ASHAKQAKYGECPHDPGGYFVVSGTEKV---ILIQEQ---LSKNRIIVEEFKGDLTASVT 187

Query: 148  VIRCVRKDQSSVTLK--LYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHL 205
                 RK ++++  K   +Y+L  ++            +P+ +VLKA+   +D EI   +
Sbjct: 188  SSSADRKTKTTIIFKNDQFYMLVNTL---------SEAVPLVVVLKAMGVISDQEIMQLI 238

Query: 206  TCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSE 265
                    ++E   V  P V ER         +L++ T+ Q L ++G   + +     + 
Sbjct: 239  GA------EEEAMLVLGPSV-ERCA-------NLNIFTQNQALAYLGSKIKLLRTYGGAR 284

Query: 266  SYYAVAETVIRDYIFVHLNDNNDKFN----LLIFMLQK-LFSLVDHTSVSDNPDSLQNQE 320
            +   +   ++   +  H+   N  F      L  M+++ + S+ D   ++D+ D L N+ 
Sbjct: 285  TKEDMGRDLLSSVVLAHVPCENFDFRAKAVFLSLMVRRVIISMGD--KMTDDRDYLGNKR 342

Query: 321  ILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLAN-IKKVMEKNPSKQIG 379
            + L G L+++  ++  +++  + K+  Q ++  +  +   F+  N +++ +  N  +   
Sbjct: 343  LELAGSLMSLLFEDTFKNFNAQLKR--QADVNLSKNRVAAFDATNFMREDIITNSLRNAI 400

Query: 380  TSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-V 438
            +S   +LK  ++         +R G T    RL+F+  +     +   + F   R  S  
Sbjct: 401  SSGNWILKRFKM---------ERHGVTSVLSRLSFIASLGMMTRIT--SQFEKTRKVSGP 449

Query: 439  RKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIG 498
            R L P  WG LCP  TP+GE CGL+ ++     V +  +    ++    +    L ++ G
Sbjct: 450  RSLQPSQWGMLCPADTPEGEACGLVKNLALMTHVTNDDEEEPLVKLAYNLGVESLHLING 509

Query: 499  VGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEV 558
                       + G  +   V ++G ++GV     I  +V + R L+ S   + P     
Sbjct: 510  E----------EFGRSSTFLVFINGLMLGVTRRPRI--MVRNFRLLRRSG-RISP----- 551

Query: 559  GYVPLSLGGAYPGLYLFTSPPKFVRP----------VR-------NISLPSEESQNIELI 601
             +V +SL   +  +Y+ +   +  RP          VR       N+ + + +   I  +
Sbjct: 552  -FVSISLNKKHRCVYIASDAGRTCRPYIIVENGKSKVRPHHLEELNMGITTFDDFVINGL 610

Query: 602  GPFEQVFMEIRCPDGGDGGRRNAFPA--THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQ 659
              +  V  E    D       N   A  TH EI P  +L   A L PY +HNQSPRN YQ
Sbjct: 611  VEYLDVNEE---NDSLLALYENNIEADTTHLEIEPFTILGACAGLIPYPNHNQSPRNTYQ 667

Query: 660  CQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAY 719
            C M KQ MG      + R D  LY L  P  P+V+T T      ++ P G N IVAV+++
Sbjct: 668  CAMGKQAMGVIALNYQQRIDTLLYSLVYPMRPVVKTRTIELIDFEKLPAGQNPIVAVMSF 727

Query: 720  TGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD-DGNKVDRGQKLFRRNK-DAKSLHS 777
            +GYD+EDA ++N++S DRG     +Y      L   +GN  D  +   R    +AK + +
Sbjct: 728  SGYDIEDATVMNRASFDRGYGRCVVYSKMQTSLKKYNGNLTDIIRPAPRDEAGNAKGIVA 787

Query: 778  VIDSDGLPYVGQ--MIHPGEPY--CSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKN 833
            V    G P   +  +++   P    +  D  +   R     G ++ + D V V   N  +
Sbjct: 788  V----GQPMYNRDVLVNKQTPIKRGTEIDYASTQVRYKGTVGKDA-YCDQVMVSSNNEDS 842

Query: 834  LPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFP 893
            +  K  IR R TR P +GDKFSSRHGQKGVC  +    DMPF+   G+ PD I+NPH FP
Sbjct: 843  MLIK--IRVRSTRIPELGDKFSSRHGQKGVCGLIVNQEDMPFND-AGVCPDKIMNPHGFP 899

Query: 894  SRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCG 953
            SRMT+  L+E   AK G L+G +   T F  +                + E+   L   G
Sbjct: 900  SRMTVGKLMEFCGAKAGVLNGNYNYGTAFGGTT---------------IPEMCNTLLKHG 944

Query: 954  FNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRK 1013
            +NYHG + L SG+ G  L   IF+GPV+YQ+L+HMV DK   RS G M  +TRQP +GR 
Sbjct: 945  YNYHGKDYLTSGITGEPLESYIFMGPVFYQKLKHMVMDKMHARSQGPMTLLTRQPTEGRA 1004

Query: 1014 RGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIR 1073
            R GG+R GEMERD L+ HG++ LL +RL   SD      CS CG + +A +         
Sbjct: 1005 REGGLRLGEMERDCLIGHGSSMLLLERLMISSDAFEVHACSQCGLLGSAGW--------- 1055

Query: 1074 EIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI--KITLQ 1124
                           C  C++S+G+  + +PY  + L  EL +MNI  ++TLQ
Sbjct: 1056 ---------------CQYCKSSRGISKLQLPYACKLLFQELQSMNIVPRLTLQ 1093


>gi|224132576|ref|XP_002321356.1| predicted protein [Populus trichocarpa]
 gi|222868352|gb|EEF05483.1| predicted protein [Populus trichocarpa]
          Length = 1141

 Score =  388 bits (996), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 329/1207 (27%), Positives = 529/1207 (43%), Gaps = 177/1207 (14%)

Query: 8    DFEPLRELVRHHIESFDYMLDEGLSEMF-------------------------------- 35
            +F   R LV+ H++SF+Y ++ G+ ++                                 
Sbjct: 26   EFLKGRGLVKQHLDSFNYFINIGIKKIVRANDRIVSTVDPSLYLRFTDVKIGKPSMVVDA 85

Query: 36   -------DHCRQAKISYTGKLMADVEFQYLDAG--SPVVRERFNFGQFPVMLKTRRCHLQ 86
                     CR +  +Y   ++ ++E+     G    +++     G+ P+ML++  C L 
Sbjct: 86   ISEQITPHMCRLSDTTYAAPILVNIEYISGSHGRKEKMIKNDVVIGRMPIMLRSCCCVLY 145

Query: 87   GADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKA 146
            G +  +L  L E   + GGYF++ G E+V   +++ +Q   +S  R    + ++G  + +
Sbjct: 146  GKNEAELARLGECPLDPGGYFVVKGTEKV---ILIQEQ---LSKNRIIIDNDKKGNINAS 199

Query: 147  VVIRCVRKDQSSVTL----KLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIF 202
            V          +V L    K+Y  LN   +           +P+ +V+KA+   +D E+ 
Sbjct: 200  VTSSTEATKSKTVILMEKEKMYLCLNQFAKK----------IPIMVVMKAMGMESDQEVV 249

Query: 203  NHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGL 262
              +    D +Y        S L+   ++    E     + T+ Q L+++    +      
Sbjct: 250  QMVG--RDPRY--------SALLLPSIE----ECASHGVYTQQQALEYLEAMVKRSTYSS 295

Query: 263  QSESYYAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQN 318
             S      A  ++RD    ++    N+   K   +  ML+++   + +    D+ D + N
Sbjct: 296  SSTEKENRALAILRDVFIANVPVRKNNFRPKCIYVAVMLRRMMEALLNKDAMDDKDYVGN 355

Query: 319  QEILLPGHLITIYLKEKLEDWLRKGKKLIQDEI--ENNGKKFDFFNLANIKKVMEKNPSK 376
            + + L G LI++  ++  +  + + +K     +  +N   +FDF                
Sbjct: 356  KRLELSGQLISLLFEDLFKTMITEVQKTADTLLVKQNRSSRFDFSQYI---------VRD 406

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   +E  L TG    +       R G T    RL+++  +     +     F   R  
Sbjct: 407  SITNGLERALSTGNWDVKRFR--MNRKGVTQVLVRLSYMASLGHMTRI--SPQFEKSRKV 462

Query: 437  S-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV 495
            S  R L P  WG LCP  TP+GE CGL+ ++     V +  +    I     +    L +
Sbjct: 463  SGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEESPLISLCKCLGVEDLEL 522

Query: 496  LIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDD 555
            L G  +            P    V+ +G ++G       ++    +R+L+ +        
Sbjct: 523  LSGEEL----------HTPNSFLVIFNGLILG--KHRRPQQFANAMRKLRRAG------- 563

Query: 556  LEVG-YVPLSLGGAYPGLYLFTSPPKFVRPV----RNISLPSEESQNIELIGP--FEQVF 608
             ++G +V + +      +Y+ +   +  RP+    + +S   E      + G   F+   
Sbjct: 564  -KIGEFVSVFVNEKQRAVYIASDGGRVCRPLVIADKGVSRIKEHHMRELMDGARTFDDFL 622

Query: 609  MEIRCPDGGDGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMY 658
             E            NA  A          TH EI P  +L VVA L PY  HNQSPRN Y
Sbjct: 623  HEGLIEYLDVNEENNALIALYEWEATPETTHIEIEPFTILGVVAGLIPYPHHNQSPRNTY 682

Query: 659  QCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLA 718
            QC M KQ MG        R D  LY L  PQ P++ T T    G D+   G NA VAV++
Sbjct: 683  QCAMGKQAMGNIAYNQASRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMS 742

Query: 719  YTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSV 778
            Y+GYD+EDA+++NK+S+DRG   G+    +    ++   +     ++ R  K+ +    V
Sbjct: 743  YSGYDIEDAIVMNKASLDRGF--GRCIVLKKYTCTNQKYENGASDRILRPRKNEER-ERV 799

Query: 779  IDSDGLPYVGQMIHPGE-------------PYCSIYDKTTNSWRTNSR--KGSE--SVFV 821
            +D DGL   G++I  G+             P  S        +R  ++  KG+E  S  V
Sbjct: 800  LDDDGLAAPGEIIRHGDIYINKESPIETRGPLKSAAALADVKYRPCAQIFKGTEGESCVV 859

Query: 822  DYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGM 881
            D VA+    + NL  K  IR  HTR P +GDKFSSRHGQKGVC  +    D PFS   G+
Sbjct: 860  DRVALCSDKNNNLCIKYKIR--HTRRPEVGDKFSSRHGQKGVCGTIIQQEDFPFSE-RGI 916

Query: 882  RPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSL 941
             PDLI+NPH FPSRMT+  ++E +  K G   G+F   + F     + +G     E+   
Sbjct: 917  CPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFG----EPSGHADRVEAIRH 972

Query: 942  VDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTM 1001
               L E L   GF+Y+G + +YSG+ G  L   IF+GP+YYQ+L+HMV DK   R +G  
Sbjct: 973  FLSLIETLVKHGFSYNGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPR 1032

Query: 1002 DQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLT 1061
              +TRQP  GR R GG+R GEME+D L+A+G + LL++RL   SD   A VC  CG  L 
Sbjct: 1033 VMLTRQPTDGRARNGGLRVGEMEKDCLVAYGTSMLLYERLMVSSDQFEAQVCRACG--LL 1090

Query: 1062 ATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKI 1121
              +    K A+                C  C+    + T+ +PY  + L  EL +MNI  
Sbjct: 1091 GYYNQKLKAAM----------------CTTCKNGDKVSTMKLPYACKLLIQELQSMNIVP 1134

Query: 1122 TLQLGDG 1128
             L+L + 
Sbjct: 1135 RLKLAEA 1141


>gi|315426560|dbj|BAJ48190.1| DNA-directed RNA polymerase subunit B [Candidatus Caldiarchaeum
            subterraneum]
 gi|343485294|dbj|BAJ50948.1| DNA-directed RNA polymerase subunit B [Candidatus Caldiarchaeum
            subterraneum]
          Length = 1117

 Score =  387 bits (995), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 365/1197 (30%), Positives = 528/1197 (44%), Gaps = 205/1197 (17%)

Query: 15   LVRHHIESFDYMLDEGLSEMFDHCRQAKISYT--------GKLMADVEFQ---------- 56
            LV+HH+ SF+Y +  GL ++ +     +I           G++  D+  +          
Sbjct: 23   LVQHHLRSFNYFVKTGLQQLVNSMSDYEIKTKHGTVVVKFGQVTIDIPTKREIDAPNPQP 82

Query: 57   -----------------------YLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKL 93
                                   Y D       E    G  PVM+K+  C L      +L
Sbjct: 83   LYPWEARLRNLTYEAPIYIKMSIYFDGKPIAPPENVWVGNIPVMVKSDICPLSKMTHDEL 142

Query: 94   VSLKEEAAEMGGYFILNGLERVFRSV--ILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC 151
            ++  E+  + GGYFI+NG ERV   +  + P +     +V     D +  Y+  AV++  
Sbjct: 143  LAHGEDPQDPGGYFIINGSERVIVGIEDLAPNR----IIVTKKEGDSKPQYS--AVILSA 196

Query: 152  VRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDE 211
                Q  V +++ Y  +  V++ F    K   +P  I+L+AL  T D EI N +      
Sbjct: 197  AHGRQ--VRVEVSYRKDSPVKVYFSRIYKG--VPAIIMLRALGLTKDQEIANLI------ 246

Query: 212  KYKKEKGAVGSPL--VSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
                      SPL  V E ++    E +   + T  Q L +IG     +  G   E    
Sbjct: 247  ----------SPLKEVQELLEPSFREAE--GVETVEQALDYIGSR---IAFGYAEEYRLE 291

Query: 270  VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVS----DNPDSLQNQEILLPG 325
             AE ++     +HL             L ++   V  TS+     D+ D   N+ + L  
Sbjct: 292  KAEQIVDTMFMLHLGTTKAARMKKAVHLCEMIGRVLETSLGLREPDDRDHYANKRLKLES 351

Query: 326  HLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
             L+T   +      LR  +  ++  I                      P++Q   SI T 
Sbjct: 352  ALLTELYRMAFVKLLRDLRYQLERII----------------------PTRQ-PISISTY 388

Query: 386  LKTG------RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVR 439
            ++ G      + A  TG     R G T    R N+L  +S  R V    S  G      R
Sbjct: 389  VRHGIVSEFVKHAMATGNWPGGRVGVTQLLNRTNYLATLSHLRRVQSPLS-RGQPHFEAR 447

Query: 440  KLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGV 499
             L    WG LCP  TP+G   GL+ ++  +  V+           F   +  +L  L  +
Sbjct: 448  DLHGTHWGRLCPCETPEGSNAGLVKNLALSAEVS-----------FQANKKELLDRLFQL 496

Query: 500  GMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVG 559
             +IP    + K  PP  + V +DG + G    S    +V  LRRL+     +I  ++ V 
Sbjct: 497  NVIPLNEIIAKRRPPPNVKVFVDGVLEGY--HSNGVMLVNELRRLR--REGIISQNINVA 552

Query: 560  YVPLSLGGAYPGLYLFTSPPKFVRP---VRNISLPSEESQNIELIGPFEQVFME------ 610
               L   G    + + T   +  RP   V+N   P  + Q++ELI      F +      
Sbjct: 553  ---LYTYGHVQEVVINTDEGRIRRPLIVVQN-GQPLLQRQHVELIKRKTSKFRDLVSLGI 608

Query: 611  IRCPDGGDGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQC 660
            I   D  +    NA+ A          TH EI    ML V A+L PY++HNQSPRN+Y+ 
Sbjct: 609  IEYLDAEE--EENAYVAISPDKVTNEHTHLEISSFAMLGVTASLIPYAEHNQSPRNVYEA 666

Query: 661  QMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYT 720
             MAKQ +G        R D + + L  PQ PIV T T    GID+ P G N +VA+L   
Sbjct: 667  AMAKQALGVFASNYALRTDSRSHLLVYPQRPIVTTRTADLIGIDKRPLGQNMVVAILTGK 726

Query: 721  GYDMEDAMILNKSSVDRGM---CHGQIYQTET----------IDLSDDGNKVDRGQKLFR 767
            GY+MEDA++LN+SSV+RG+      +IY+ E             + +   +  RG++ +R
Sbjct: 727  GYNMEDAVVLNRSSVERGLGLSLSWRIYEVEARQTPGGQRDKFGIPEPSVRGYRGEQFYR 786

Query: 768  -RNKDAKSLHSVIDSDGLPYVGQMIHPG--EPYCSIYDKTTNSWRTNSR--KGSESVFVD 822
              +KD  +      S G   VG M  P   E Y  +  +    WR +S   + SE+  V+
Sbjct: 787  VLDKDGFAHIESDVSGGTVIVGMMSPPRFLEEYQRVPTREM-VWRDSSETVQPSETGNVE 845

Query: 823  YVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMR 882
             + + +    NL  KA +R   T    IGDKFSSRHGQKGV   L P  DMP++   G+ 
Sbjct: 846  NIFITINAEGNLLVKAKVR--STCFTEIGDKFSSRHGQKGVVGMLIPQEDMPYTK-DGIV 902

Query: 883  PDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLV 942
            PDL+INPHAFPSRMTI  L+ES+A K GS+  + +D TPF                KSL 
Sbjct: 903  PDLLINPHAFPSRMTIGQLIESLAGKLGSIKAEIVDGTPFLG--------------KSL- 947

Query: 943  DELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMD 1002
            +EL   L   GF   G E+LY+G  G  L  E+FIG VYYQRL H+V DK   R+ G + 
Sbjct: 948  EELRAELEALGFKSSGRELLYNGATGKILEAEVFIGVVYYQRLHHLVRDKIHARARGQVQ 1007

Query: 1003 QITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTA 1062
             +TRQP +GR RGGG++FGEMERD L+A+GA+YLL DRL   SD + A  C  CG  +  
Sbjct: 1008 MLTRQPTEGRSRGGGLKFGEMERDCLIAYGASYLLLDRLLEQSDKYTAYFCEKCG--MPC 1065

Query: 1063 TFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
             +   Q+R +  + G       K V   A         V+M Y F  L  E+ +M I
Sbjct: 1066 YYDLKQERFVCPVDG-------KDVRVKA---------VSMSYAFYLLLNEMMSMCI 1106


>gi|396082220|gb|AFN83830.1| DNA-directed RNA polymerase subunit beta [Encephalitozoon romaleae
            SJ-2008]
          Length = 1141

 Score =  387 bits (995), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 327/1139 (28%), Positives = 519/1139 (45%), Gaps = 153/1139 (13%)

Query: 36   DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN---FGQFPVMLKTRRCHLQGADSQK 92
            +  R   ++Y   L  DV  + +     V + +++   FG  PVML++  C L G   + 
Sbjct: 93   NEARIRDLTYASPLFIDVIKETVSELGVVDKHKYSRVPFGSLPVMLRSSYCVLHGLGDKD 152

Query: 93   LVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCV 152
            L+ L E   + GGYFI+NG E+V    I+ ++    + V    + +   YT  A  IR V
Sbjct: 153  LIDLGECPYDQGGYFIVNGSEKV----IVAQERMASNTVYVFKKAQPATYTHYAE-IRSV 207

Query: 153  ----RKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
                 ++ S++++KL     G++R+   L  ++  +P+ ++ +AL   +D EI +H+   
Sbjct: 208  PEKSSRNPSTLSMKLCRS-PGAIRVSLPLVKQD--IPLFVLYRALGFLSDKEIIDHI--L 262

Query: 209  Y---DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSE 265
            Y   DE ++  K ++    V          VQD ++      L +IG+   PV  G   E
Sbjct: 263  YEDDDEMFELLKESIEEGTV----------VQDQNVA-----LDYIGKRSAPV--GTPQE 305

Query: 266  SYYAVAETVIRDYIFVHLNDN----NDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEI 321
                +A  ++   +  H+         K   + +++Q+L  +       D+ D    + +
Sbjct: 306  KRITIARDLLAKEVLPHIGTQEFCETKKAYFIGYIVQRLLLVALGRRNPDDRDHYGKKRM 365

Query: 322  LLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTS 381
             L G L+    +   +       + +Q  IEN  +    FN+A   K      +  I   
Sbjct: 366  DLSGPLLASLFRTLFKKLCADTTRHMQKCIENGRE----FNIALGLK------ASIITQG 415

Query: 382  IETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKL 441
                L TG    Q    +Q RAG      R NF+  +S  R V+      G +  + R+L
Sbjct: 416  FRYALATGNWGDQAKA-MQTRAGVAQVLNRYNFVSTLSHLRRVNTPIEKEG-KLAAPRQL 473

Query: 442  LPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGM 501
                WG +CP  TP+G+ CGL+ +++    + S   S G + +F +          GV  
Sbjct: 474  HNTHWGMVCPAETPEGQACGLVKNLSLMAYI-SVGSSSGPLIEFLEE--------CGVES 524

Query: 502  IPSLPKLVKSGPPAVLSVLLDGRVVGV--IPSSEIEKVVAHLRRLKVSAASVIPDDLEVG 559
            +  +  L  S       V ++G  VG+   P   I+ +    R L++     I  D+   
Sbjct: 525  LEEISTLQLS---TATKVFVNGVWVGIHSDPVYLIKSLKLLRRSLEIDKEVSIVRDIREK 581

Query: 560  YVPLSLGGAYPGLYLFT-SPPKFVRPVRNI-SLPSEESQNIELIGPFEQVFMEIR----- 612
             + +      P   L      K V  + +I  L   E +   LIG     F+++      
Sbjct: 582  EIRIQSDAGRPCRPLMVVRDNKLVITIEDIRKLRRGEIKWDNLIGEGFIEFLDVEEEEMS 641

Query: 613  ------------CPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQC 660
                        C +  D         TH EIHP  +L + A+  P+ DHNQSPRN YQ 
Sbjct: 642  MIAMSTKVLNDECKNSSD----VKISYTHCEIHPALILGICASTIPFPDHNQSPRNTYQS 697

Query: 661  QMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYT 720
             M KQ MG        R D     L  PQ P+V T +       E P+G NA+VA+  Y+
Sbjct: 698  AMGKQAMGIYATNFLLRMDTLSNILFYPQKPLVTTKSMEYLRFKELPSGQNALVAIACYS 757

Query: 721  GYDMEDAMILNKSSVDRGMCHGQIYQTETID-------LSDDGNKVDRGQKLFRRNKDAK 773
            GY+ ED++I+N+S++DRG+     Y+T T         ++++  K +RG  L  +N +  
Sbjct: 758  GYNQEDSIIMNQSAIDRGLFRSFFYRTYTDQESMSRPGVNEEFCKPNRGSVLRMKNLN-- 815

Query: 774  SLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSR--KGSESVF 820
              ++ +D DGL             +G++    +P  S  +     ++ +S   + +E+  
Sbjct: 816  --YNKLDEDGLISPGVRVTGDDVLIGKITPILDPERSTKEAPVYVYKDSSTAMRRTETGI 873

Query: 821  VDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTG 880
            VD V V  K+       + ++ R  R P +GDKF+SRH QKG         DMPF+   G
Sbjct: 874  VDTVIVTNKDGYKF---SKVKIRSGRIPQMGDKFASRHAQKGTIGITLRQEDMPFTS-DG 929

Query: 881  MRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKS 940
            + PD+IINPHA PSRMTI  L+E +  K  ++ G+  DATPF               S  
Sbjct: 930  IVPDIIINPHAIPSRMTIGHLIECLLGKVSAMSGEEGDATPF---------------SGM 974

Query: 941  LVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGT 1000
             V+E+   L++ GF   G+EV+Y+G+ G +L  +IF GP YYQRL+HMV DK   R+ G 
Sbjct: 975  SVNEISTRLKSYGFQQRGLEVMYNGMTGRKLRAQIFFGPTYYQRLKHMVDDKIHARARGP 1034

Query: 1001 MDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVL 1060
            +  +TRQP++GR R GG+RFGEMERD +++HGA+  L +RL   SD +   VC+LCG   
Sbjct: 1035 LQILTRQPVEGRSRDGGLRFGEMERDCIISHGASAFLKERLMDVSDAYSCYVCNLCG--- 1091

Query: 1061 TATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
                       +  +GG       K   C  C  +  +  V +PY F+ L  EL  MNI
Sbjct: 1092 -----------LLAMGGT------KVNECKGCNNTTNVSMVEIPYAFKLLIQELMGMNI 1133


>gi|307208700|gb|EFN85990.1| DNA-directed RNA polymerase II subunit RPB2 [Harpegnathos saltator]
          Length = 1123

 Score =  387 bits (994), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 322/1143 (28%), Positives = 510/1143 (44%), Gaps = 140/1143 (12%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   +    ++   G+ P+ML+++ C L G   
Sbjct: 57   MPNEARLRNLTYSAPLYVDITKTIMKDGEEPIETQHQKTFIGKIPIMLRSKYCLLAGLSD 116

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  Y  KA +  
Sbjct: 117  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKYAY--KAEIRS 171

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  +      +     G+  +         +P+ +V +AL    D +
Sbjct: 172  CLEHSSRPTSTLWINMMAKSGASIKKSAIGQRIVAIIPYVKQEIPIMVVFRALGFVADRD 231

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +D+           P + E VK  L E     +  +   L  IG        
Sbjct: 232  ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGTRGARA-- 276

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     A  +++  +  H+  ++     K   L +M+ +L S        D+ D  
Sbjct: 277  GVTKEKRIKYAREILQKEMLPHVGISDFCETKKAYFLGYMVHRLLSASLGRRELDDRDHY 336

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   ++ +++ +   Q  I + GK F+   LA IK       +K
Sbjct: 337  GNKRLDLAGPLLAFLFRALFKNLMKEVRLYAQKFI-DRGKDFNL-ELA-IK-------TK 386

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   +   L TG    Q     Q RAG +    RL F   +S  R V+      G +  
Sbjct: 387  IITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 444

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG LCP  TP+G   GL+ ++     ++                + IL  L
Sbjct: 445  KPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 493

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  S       + ++G  VG+    + ++++A LR+L+      VS  S
Sbjct: 494  EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPDQLMATLRKLRRQMDIIVSEVS 550

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN----IELIGP--- 603
            +I D  +      +  G      L       +   R+I +  E   N     EL+G    
Sbjct: 551  MIRDIRDREIRIYTDAGRISRPLLIVEGQNLLLKKRHIDMLKERDYNNDGWQELVGSGVV 610

Query: 604  ------FEQVFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQSPR 655
                   E+  M    PD     +  A+  T  H EIHP  +L V A++ P+ DHNQSPR
Sbjct: 611  EYIDTLEEETVMIAMSPDDLRQEKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPR 670

Query: 656  NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
            N YQ  M KQ MG  +     R D   + L  P  P+V T +       E P G N+IVA
Sbjct: 671  NTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVA 730

Query: 716  VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT----ETIDLSDDGNKVDRGQKLFRRNKD 771
            +L YTGY+ ED++ILN S+V+RG      Y++    E+  + D   + ++  +L  +   
Sbjct: 731  ILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKEAESKKIGDQEEQFEKPSRLTCQGM- 789

Query: 772  AKSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSR----KGS 816
              +++  +D DG+             +G+ I   E    + D TT  +         + S
Sbjct: 790  RNAIYDKLDDDGIIAPGIRVSGDDVIIGKTITLPETDDEL-DSTTKRFTKRDASTFLRNS 848

Query: 817  ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS 876
            E+  VD V + + NS+   +   IR R  R P IGDKF+SRHGQKG C   +   DMPFS
Sbjct: 849  ETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFS 906

Query: 877  GVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTD 936
               G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF ++V          
Sbjct: 907  -CEGLTPDIIINPHAIPSRMTIGHLIECIQGKVSANKGEIGDATPFNDAVN--------- 956

Query: 937  ESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVR 996
                 V ++  +L+  G+   G EV+Y+G  G ++  ++F+GP YYQRL+HMV DK   R
Sbjct: 957  -----VQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSR 1011

Query: 997  STGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLC 1056
            + G +  + RQP++GR R GG+RFGEMERD  ++HGAA  L +RL   SD +   +C+ C
Sbjct: 1012 ARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHICNFC 1071

Query: 1057 GSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAA 1116
            G +  A   +                      C  C+    +  + +PY  + L  EL A
Sbjct: 1072 GLIAIANLRN------------------NTFECKGCKNKTQISQIRLPYAAKLLFQELMA 1113

Query: 1117 MNI 1119
            MNI
Sbjct: 1114 MNI 1116


>gi|223994131|ref|XP_002286749.1| DNA directed RNA polymerase III, second largest subunit
            [Thalassiosira pseudonana CCMP1335]
 gi|220978064|gb|EED96390.1| DNA directed RNA polymerase III, second largest subunit
            [Thalassiosira pseudonana CCMP1335]
          Length = 1108

 Score =  387 bits (994), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 328/1151 (28%), Positives = 517/1151 (44%), Gaps = 167/1151 (14%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
             CR    +Y+  +  +V  +Y      VV+++   G+ P+ML++ +C L+    ++L  +
Sbjct: 64   QCRLRDCTYSAPIYVNV--RYTRGRQIVVKKKVMIGRMPIMLRSSKCLLRDKSERELAQM 121

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
            KE   + GGYF++ G+E+V   +++ +Q   +S  R    +  +     A +    R+ +
Sbjct: 122  KECPYDPGGYFVIKGVEKV---ILIQEQ---LSKNRVIIEEDSKTGCVSASITSSTRERK 175

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
            S   +   ++ NG + L      ++  +P+ + +KA+   +DLE                
Sbjct: 176  SKAYI---FIKNGRLFLKHNTLAED--VPICVAMKAMGVESDLEFVQ------------- 217

Query: 217  KGAVGS-PLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA---VAE 272
              +VGS P V + + + L E   L + T+   L++IG   +       S    +    A 
Sbjct: 218  --SVGSEPEVIDALALSLEEPSKLGIVTQRHALKYIGNKMRAKRGAFGSTRKLSPEDEAR 275

Query: 273  TVIRDYIFVHLNDNNDKFNLLIF----MLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
             V  + +  H+   N  F+        ++++L  +    S  D+ D   N+ + L G L+
Sbjct: 276  DVFANVVLSHVPVVNFDFHAKTIYIGHIVRRLVMVQLGKSSLDDKDYYGNKRLELAGSLL 335

Query: 329  TIYLKEKLEDW---LRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIET- 384
            ++  ++  + +   L+K   ++  +  N  + FD      IK +   + +  + ++I + 
Sbjct: 336  SLLFEDLFKHFNTDLKKQTDMVLSK-PNRAQAFDV-----IKTIRPDSIAYGMMSAISSG 389

Query: 385  --MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKL 441
              +LK  R+          RAG T    RL+++  +     V+  + F   R  S  R L
Sbjct: 390  NWVLKRFRM---------DRAGVTQVLSRLSYISALGMMTRVN--SQFEKTRKVSGPRSL 438

Query: 442  LPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGM 501
             P  WG LCP  TP+GE CGL+ ++     + +  +S    R         L    GV  
Sbjct: 439  QPSQWGMLCPADTPEGEACGLVKNLALLAHITTDEESEAIER---------LCRDCGVED 489

Query: 502  IPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVG-Y 560
            +  L         A L VLL+G +VGV   +    +V  LR L+           ++G +
Sbjct: 490  VTLLSGHEIHSRNAFL-VLLNGLIVGV--HTRPLWLVKSLRSLRRQG--------QMGEF 538

Query: 561  VPLSLGGAYPGLYLFTSPPKFVRPV----RNISLPSEESQNIELIG-------------- 602
            V L L      +++ T   +  RP+       +LP  +  +IE +               
Sbjct: 539  VSLYLHDGQKAVHIATDGGRVCRPLIIVDEKTALPRLKQVHIEGLALGTIHIKDLLRQGV 598

Query: 603  -PFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQ 661
              +  V  E  C              TH EI P  +L VVA L P   HNQSPRN YQ  
Sbjct: 599  VEYVDVNEENNCLIAVTERELEWMAYTHLEIDPMTLLGVVAGLIPNPHHNQSPRNTYQSA 658

Query: 662  MAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTG 721
            M KQ +G        R D  LY +  P  P+V+T T      D  P G NA +AV++Y+G
Sbjct: 659  MGKQAIGTVAINQYSRFDGMLYTMVYPHKPMVKTRTLDLINFDNIPAGQNACIAVMSYSG 718

Query: 722  YDMEDAMILNKSSVDRGMCHGQI----------YQTETIDLS---DDGNKVDRGQKLFRR 768
            YD+EDA++LNK+SVDRG     +          YQ  T+D +    D +    G++  R 
Sbjct: 719  YDIEDAVVLNKASVDRGFGRCMVLKKSQASVRRYQNGTMDRTCGAPDPSAFPSGEEDKRY 778

Query: 769  NKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNS------------WRTNSRKGS 816
             +     +  ID DGL  VG+++  G    +    T  S            +   S + S
Sbjct: 779  AR-----YRGIDKDGLCMVGELMENGTVMVNKESPTDTSTPVERLAQVSYKYSGMSYRSS 833

Query: 817  ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS 876
               +VD V +    ++    K  +  R  R P +GDKF+SRHGQKGVC  + P +DMPF+
Sbjct: 834  APSYVDRVLISSNENEQFLIK--VMLRQVRRPELGDKFASRHGQKGVCGLIVPQVDMPFN 891

Query: 877  GVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTD 936
               G  PDLI+NPH FPSRMT+  L+E +  K G   G+   A+ F        G T T 
Sbjct: 892  E-QGFPPDLIMNPHGFPSRMTVGKLIELLVGKAGVFEGRQAYASAFGEEF----GSTDTV 946

Query: 937  ESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVR 996
            +S  L      ++R  G NY G ++ YSGV G  L   IF GPV+YQ+L+HMV DK   R
Sbjct: 947  QSAELA-----LIRN-GLNYTGKDIFYSGVNGAPLDAYIFSGPVFYQKLKHMVLDKMHAR 1000

Query: 997  STGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLC 1056
            S G    +TRQP +GR R GG+R GEMERD L+A+GA+ L+ +RL   SD   A VC  C
Sbjct: 1001 SRGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIAYGASNLIMERLMHSSDAFSASVCMTC 1060

Query: 1057 GSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAA 1116
            G +    +                        C  C++ + +  + +PY  + L  EL A
Sbjct: 1061 GLLQYQNW------------------------CQYCRSGEKVSDIRLPYACKLLFQELQA 1096

Query: 1117 MNIKITLQLGD 1127
            MN+   L+L D
Sbjct: 1097 MNVLPRLRLKD 1107


>gi|332022245|gb|EGI62560.1| DNA-directed RNA polymerase II subunit RPB2 [Acromyrmex echinatior]
          Length = 1178

 Score =  387 bits (994), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 325/1146 (28%), Positives = 512/1146 (44%), Gaps = 146/1146 (12%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+       G   V    ++   G+ P+ML+++ C L G   
Sbjct: 112  MPNEARLRNLTYSAPLYVDITKTIEKDGEDPVETQHQKTFIGKIPIMLRSKYCLLAGLSD 171

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  Y  KA +  
Sbjct: 172  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKYAY--KAEIRS 226

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  +      +     G+  +         +P+ +V +AL    D +
Sbjct: 227  CLEHSSRPTSTLWINMMAKSGASIKKSAIGQRIIAIIPYIKQEIPIMVVFRALGFVADRD 286

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +D+           P + E VK  L E     +  +   L  IG   +    
Sbjct: 287  ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGT--RGAKP 331

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     A  +++  +  H+  ++     K   L +M+ +L S        D+ D  
Sbjct: 332  GVTKEKRIKYAREILQKEMLPHVGISDFCETKKAYFLGYMVHRLLSASLGRRELDDRDHY 391

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   ++ L K  +L   +  + GK F+   LA IK       +K
Sbjct: 392  GNKRLDLAGPLLAFLFRGLFKN-LMKEVRLYAQKFIDRGKDFNL-ELA-IK-------TK 441

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   +   L TG    Q     Q RAG +    RL F   +S  R V+      G +  
Sbjct: 442  IITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 499

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG LCP  TP+G   GL+ ++     ++                + IL  L
Sbjct: 500  KPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 548

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  S       + ++G  VG+    + ++++A LR+L+      VS  S
Sbjct: 549  EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPDQLMATLRKLRRQMDIIVSEVS 605

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN----IELIGP--- 603
            ++ D  +      +  G      L       +   R+I++  E   N     EL+G    
Sbjct: 606  MVRDIRDREIRIYTDAGRISRPLLIVEGQNLLLQTRHINMLKERDYNNDGWQELVGSGVV 665

Query: 604  ------FEQVFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQSPR 655
                   E+  M    PD     +  A+  T  H EIHP  +L V A++ P+ DHNQSPR
Sbjct: 666  EYIDTLEEETVMIAMSPDDLRQEKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPR 725

Query: 656  NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
            N YQ  M KQ MG  +     R D   + L  P  P+V T +       E P G N+IVA
Sbjct: 726  NTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVA 785

Query: 716  VLAYTGYDMEDAMILNKSSVDRGMCHGQIY----QTETIDLSDDGNKVDRGQKLF---RR 768
            +L YTGY+ ED++ILN S+V+RG      Y    ++E+  + D   + ++  +L     R
Sbjct: 786  ILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKESESKKIGDQEEQFEKPSRLTCSGMR 845

Query: 769  NKDAKSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSR---- 813
            N    +++  +D DG+             +G+ I   E    + D TT  +         
Sbjct: 846  N----AIYDKLDDDGIIAPGIRVSGDDVIIGKTITLPETDDEL-DSTTKRFTKRDASTFL 900

Query: 814  KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDM 873
            + SE+  VD V + + NS+   +   IR R  R P IGDKF+SRHGQKG C   +   DM
Sbjct: 901  RNSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDM 958

Query: 874  PFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDT 933
            PFS   G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF ++V       
Sbjct: 959  PFSS-EGLTPDIIINPHAIPSRMTIGHLIECIQGKVSANKGEIGDATPFNDAVN------ 1011

Query: 934  GTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKF 993
                    V ++  +L+  G++  G EV+Y+G  G ++  ++F+GP YYQRL+HMV DK 
Sbjct: 1012 --------VQKISTLLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKI 1063

Query: 994  QVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVC 1053
              R+ G +  + RQP++GR R GG+RFGEMERD  ++HGAA  L +RL   SD +   +C
Sbjct: 1064 HSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHIC 1123

Query: 1054 SLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAE 1113
            + CG +  A   +                      C  C+    +  + +PY  + L  E
Sbjct: 1124 NFCGLIAIANLRN------------------NTFECKGCKNKTQIAQIRLPYAAKLLFQE 1165

Query: 1114 LAAMNI 1119
            L AMNI
Sbjct: 1166 LMAMNI 1171


>gi|198418494|ref|XP_002128916.1| PREDICTED: similar to POLR2B protein [Ciona intestinalis]
          Length = 1173

 Score =  387 bits (994), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 326/1144 (28%), Positives = 512/1144 (44%), Gaps = 144/1144 (12%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +   +  V    ++   G+ P+ML++  C L G   
Sbjct: 109  MPNEARLRNLTYSAPLYVDITKTVVKHEAQPVETQHQKTFIGKIPIMLRSTYCLLSGLTD 168

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++     +D +  +T +   IR
Sbjct: 169  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFKKKDSKYAFTSE---IR 222

Query: 151  CVRKDQSSVTLKLYYLLNGSVRLGFWLQGKE----------YL---LPVGIVLKALVDTN 197
               ++ S  T  ++  +N   R G  ++             Y+   +P+ IV +AL   +
Sbjct: 223  SSLENSSRPTSSMW--VNMLARGGQGVKKSAIGQRITAIIPYIRQEIPIIIVFRALGFVS 280

Query: 198  DLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQP 257
            D +I  H+   +D+           P + E VK  L E     +  +   L  IG   + 
Sbjct: 281  DRDILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RG 325

Query: 258  VIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNP 313
               G+  E     A  +++  +  H+  ++     K   L +M+ +L S        D+ 
Sbjct: 326  AKPGVTKEKRIKYAREILQKEMLPHVGISDFCETKKAYFLGYMVHRLLSAALGRRELDDR 385

Query: 314  DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKN 373
            D   N+ + L G L+    +    + L K  +L   +  + GK F+   LA IK      
Sbjct: 386  DHYGNKRLDLAGPLLAFLFRGLFRN-LMKEVRLYAQKFIDRGKDFNL-ELA-IK------ 436

Query: 374  PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
             ++ I   ++  L TG    Q     Q RAG +    RL +   +S  R ++      G 
Sbjct: 437  -TRIITDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTYASTLSHLRRLNSPIGRDG- 493

Query: 434  RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
            +    R+L    WG +CP  TP+G   GL+ ++     ++                + IL
Sbjct: 494  KLAKPRQLHNSLWGMICPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPIL 542

Query: 494  RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VS 547
              L    M  +L ++  S       + ++G  VG+    + E+++  LR+L+      VS
Sbjct: 543  EFLEEWSM-ENLEEISPSAIANATKIFVNGCWVGI--HRDPEQLMNTLRKLRRQMDIIVS 599

Query: 548  AASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEE-----------SQ 596
              S++ D  E      +  G      L     K +   R+I    E+           S 
Sbjct: 600  EVSMVRDIREREIRIYTDAGRICRPLLIVENQKLLLKTRHIDQLKEDYNSYSWQDLVASG 659

Query: 597  NIELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSP 654
             +E I P E+  + + +   D  D G +     TH EIHP  +L V A++ P+ DHNQSP
Sbjct: 660  VVEYIDPLEEETIMLAMFPEDLQDKGEQYCSTYTHCEIHPAMILGVCASIIPFPDHNQSP 719

Query: 655  RNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIV 714
            RN YQ  M KQ MG  +     R D   + L  PQ P+V T +       E P G NAIV
Sbjct: 720  RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINAIV 779

Query: 715  AVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT----ETIDLSDDGNKVDRGQKLFRRNK 770
            A+  YTGY+ ED++I+NKSSVDRG      Y++    E     D     +R ++ F    
Sbjct: 780  AISTYTGYNQEDSIIVNKSSVDRGFFRSVFYRSYKDAENKSAYDQEETFERPERSFCTGM 839

Query: 771  DAKSLHSVIDSDGLP-----------YVGQMIHPGEPYCSIYDKTTNSWR----TNSRKG 815
               +++  +D DGL             +G+ +   E    + + TT  ++    +   + 
Sbjct: 840  -RHAIYDKLDDDGLVSPGIRVSGDDVVIGKTVMLPENEDEL-EGTTQRFKKRDVSTFLRT 897

Query: 816  SESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPF 875
            SE+  VD V + +  +++  +   IR R  R P IGDKF+SRHGQKG C   +   DMPF
Sbjct: 898  SETGIVDQVMISI--NQDGYKFTKIRVRSVRVPQIGDKFASRHGQKGTCGITYRAEDMPF 955

Query: 876  SGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGT 935
            +   G++PDLI+NPHA PSRMTI  L+E +  K  +  G+  DATPF ++V         
Sbjct: 956  TS-EGVQPDLIVNPHAIPSRMTIGHLIECIQGKVSANKGEIGDATPFNDTVN-------- 1006

Query: 936  DESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQV 995
                  V ++  +L   G+   G EVLY+G  G +L  ++F GP YYQRL+HMV DK   
Sbjct: 1007 ------VQKISNLLHEYGYQQRGNEVLYNGHTGRKLNTQVFFGPTYYQRLKHMVDDKIHS 1060

Query: 996  RSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSL 1055
            R+ G +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +RL   SD +   VC+L
Sbjct: 1061 RARGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYRVHVCNL 1120

Query: 1056 CGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELA 1115
            CG +  A                          C  C+    +  V MPY  + L  EL 
Sbjct: 1121 CGLIAIANL------------------RSHTFECRGCKNKTHISQVRMPYACKLLFQELM 1162

Query: 1116 AMNI 1119
            +M+I
Sbjct: 1163 SMSI 1166


>gi|308799767|ref|XP_003074664.1| RNA polymerase III subunit RPC2 (ISS) [Ostreococcus tauri]
 gi|116000835|emb|CAL50515.1| RNA polymerase III subunit RPC2 (ISS) [Ostreococcus tauri]
          Length = 2569

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 349/1235 (28%), Positives = 548/1235 (44%), Gaps = 229/1235 (18%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMF--------------------------------- 35
            F  +R LVR HI+SF+Y+++E + ++                                  
Sbjct: 56   FLKVRGLVRQHIDSFNYLVNEEIKKIVRAKANERVTCDSDPNFYLKYTNIHVGRPSVEED 115

Query: 36   --------DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN------FGQFPVMLKTR 81
                      CR   ++Y   +  DVE  Y      V R++ N       G+ P+ML++ 
Sbjct: 116  YVVEEITPQQCRLRDMTYAAPITVDVE--YTRGKEIVTRQQKNGVGGIVIGRIPLMLRSS 173

Query: 82   RCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREG 141
            RC L G + ++L  L E   + GGYFI+ G+E+V   +++ +Q   +S  R       +G
Sbjct: 174  RCVLTGKNEEELARLGECPLDPGGYFIVKGVEKV---ILIQEQ---LSKNRIIIDVDNKG 227

Query: 142  YTDKAVVIRC-VRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--------LPVGIVLKA 192
                +V      RK ++++ +K                GK YL        + + IVLKA
Sbjct: 228  EIGASVTSSTHERKSKTNIVVK---------------HGKLYLRHNTCADDIAIMIVLKA 272

Query: 193  LVDTNDLEIFNHLTCCYDEKYKKEKGAVGS-PLVSERVKIILAEVQDLSLTTRLQCLQHI 251
            +   +D E  +                +GS P  +  +   L E     + T  Q L++ 
Sbjct: 273  MGMESDQEAVH---------------MIGSDPTYAMLLAPTLQECHASGIFTMQQALEYC 317

Query: 252  GEHFQPV--------IDGLQSESYYAVAET------VIRDYIFVHLNDNNDKFNLLIFML 297
                + V        I G ++     + E       V+  ++ V   D   K   +  M+
Sbjct: 318  ASKVRVVKMQSPRTQIGGARTYGRSRIDEARDILAGVVLAHVPVVAYDFRQKCAYISIMV 377

Query: 298  QKLF-SLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE----DWLRKGKKLIQDEIE 352
            +++  +L+D T V D+ D   N+ + L G LI +  ++  +    D  R+   ++     
Sbjct: 378  RRILNALLDPTQV-DDKDYYGNKRLELAGQLIALLFEDCFKRLNADLKRQADAVLSK--A 434

Query: 353  NNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERL 412
            N   +FD   L  I++    N  +   +S    +K  R+         +R G T    RL
Sbjct: 435  NRATQFDI--LKCIRQDTLSNGLEHAISSGNWTVKRFRM---------ERKGVTQVLSRL 483

Query: 413  NFLRFISFFRAVHRGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCR 471
            +F+  +     +   + F   R  S  R L P  WG LCP  TP+GE CGL+ ++     
Sbjct: 484  SFISALGMMTRIT--SQFEKTRKVSGPRALQPSQWGMLCPSDTPEGESCGLVKNLALMTH 541

Query: 472  VASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPS 531
            V +  D    +R  +          +  G + S         P    VL++G ++GV   
Sbjct: 542  VTT-DDEEEPLRRLAHALGVEPLTWLNAGEMHS---------PQGAHVLMNGSLLGV--H 589

Query: 532  SEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISL- 590
            ++ E      R+L+ +          VG   +S+  A   +Y+ +   +  RP+  I   
Sbjct: 590  AQPEAFAHAFRKLRRAG--------RVGEF-VSVYAADGCVYISSDGGRVCRPLIIIERG 640

Query: 591  -PSEESQNIELIGPFEQVFME------IRCPDGGDGGRRNAFPATHE----------EIH 633
             P    +++E +    + F +      +   D  +    +++ A +E          EI 
Sbjct: 641  EPLLTQEHLEELKDGHRTFTDFLREGLVEYLDVNE--ENDSYIALYEDEMNEETTHLEIE 698

Query: 634  PTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIV 693
            P  +L V A + PY  HNQSPRN YQC M KQ MG        R D  +Y L  PQ PIV
Sbjct: 699  PFTLLGVCAGIIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLNRMDTLMYLLVYPQKPIV 758

Query: 694  RTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLS 753
            +T T    G D    G NA +AV++Y+GYD+EDA+++N++S+DRG     + +  +  + 
Sbjct: 759  KTKTIELIGYDRLGAGQNATIAVMSYSGYDIEDAIVMNRASLDRGFGRCTVLRKYSTQVK 818

Query: 754  DDGNK-VDR--GQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYC------SIYDKT 804
               N+ +DR  G K  +R  +    H ++D DG+  VG  I PG+ Y       +  D  
Sbjct: 819  KYSNRTMDRIIGPKEDQRANENGRYH-LLDGDGIAAVGGRIKPGDIYVNKQSPINTRDPM 877

Query: 805  TNS-------WRTN--SRKG--SESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDK 853
             N        +R+N  S KG   E+  VD V + M +      K  +  R TR P +GDK
Sbjct: 878  ANPHGMPDTMYRSNPLSYKGPPGETAIVDKVLLTMTDEGQFNIKTLV--RQTRRPEVGDK 935

Query: 854  FSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLH 913
            FSSRHGQKGVC  +    D PFS   G+ PDLI+NPH FPSRMT+  ++E +  K G  +
Sbjct: 936  FSSRHGQKGVCGVILDQEDFPFSE-RGITPDLIMNPHGFPSRMTVGKMIELLGGKAGLEN 994

Query: 914  GKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTC 973
            G+F D T FA       GD+        V+ + + L   GF++ G ++L+ G+ G  L  
Sbjct: 995  GRFHDGTAFA-------GDS--------VEAIQQTLVEAGFSHKGKDMLHCGITGEALEV 1039

Query: 974  EIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGA 1033
             +F+GPVYYQ+L+HMV DK   R+ G    +TRQP +GR R GG+R GEMERD L+ +GA
Sbjct: 1040 NVFMGPVYYQKLKHMVQDKMHARARGPRVVLTRQPTEGRARDGGLRLGEMERDCLIGYGA 1099

Query: 1034 AYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQ 1093
            + L+ +RL   SD   A VC+ CG +    F H        I G        K  C  C+
Sbjct: 1100 SQLILERLMISSDQFEAQVCTKCGLL---GFQH-------HITG--------KNACTLCK 1141

Query: 1094 TSKGMETVAMPYVFRYLAAELAAMNIKITLQLGDG 1128
            T   + T+ +PY  + L  EL + NI   + L + 
Sbjct: 1142 TEAEVATLKLPYAAKLLFQELQSCNIAPRINLAEA 1176


>gi|10963|emb|CAA41631.1| DNA-directed RNA polymerase [Drosophila melanogaster]
          Length = 1135

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 329/1140 (28%), Positives = 509/1140 (44%), Gaps = 181/1140 (15%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR    +Y+  +  D+E  Y      + R     G+ P+ML++  C L G    +L  L 
Sbjct: 110  CRLRDTTYSAPITVDIE--YTRGTQRIKRNNLLIGRMPLMLRSN-CALTGKSEFELSKLN 166

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC----VR 153
            E   + GGYF++ G E+V   +++ +Q     M+   F            V++C      
Sbjct: 167  ECPLDPGGYFVVRGQEKV---ILIQEQLSWNKMLTEDFNG----------VVQCQVTSST 213

Query: 154  KDQSSVTLKL-----YYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
             ++ S TL L     YYL + S+            +P+ ++ KAL   +D EI + +   
Sbjct: 214  HEKKSRTLVLSKHGKYYLKHNSMTDD---------IPIVVIFKALGVVSDQEIQSLIGI- 263

Query: 209  YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIG-----EHFQPVIDGLQ 263
             D K +   GA             L +  +L + T+ + L+++G     + FQ       
Sbjct: 264  -DSKSQNRFGAS------------LIDAYNLKVFTQQRALEYMGSKLVVKRFQSATTKTP 310

Query: 264  SESYYAVAETVIRDYIFVHLNDNNDKFNLLI------FMLQKLFSLVDHTSVSDNPDSLQ 317
            SE    +  T I  ++ V      D FNL +       M++++ +     ++ D+ D   
Sbjct: 311  SEEARELLLTTILAHVPV------DNFNLQMKAIYVSMMVRRVMAAELDKTLFDDRDYYG 364

Query: 318  NQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQ 377
            N+ + L G L+++      ED  ++    ++   + N  K        +K +     + Q
Sbjct: 365  NKRLELAGSLLSMMF----EDLFKRMNWELKTIADKNIPKVKAAQFDVVKHMR----AAQ 416

Query: 378  IGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS 437
            I   +E+ + +G    +      +RAG T    RL+++  +     V+  + F   R  S
Sbjct: 417  ITAGLESAISSGNWTIKRFK--MERAGVTQVLSRLSYISALGMMTRVN--SQFEKTRKVS 472

Query: 438  -VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R L P  WG LCP +TP+GE CGL+ ++     + +  + R            I+   
Sbjct: 473  GPRSLQPSQWGMLCPSYTPEGEACGLVKNLALMTHITTEVEERP---------VMIVAFN 523

Query: 497  IGVGMIPSLPKLVKSGP---PAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIP 553
             GV  I    + V   P   P V  V ++G V+G+  + +   +V +LR ++        
Sbjct: 524  AGVEDI----REVSGNPINNPNVFLVFINGNVLGLTLNHK--HLVRNLRYMRRKG----- 572

Query: 554  DDLEVG-YVPLSLGGAYPGLYLFTSPPKFVRP---VRNISLPSEESQNIEL---IGPFEQ 606
                +G YV +        +Y+ T   +  RP   V N     ++    EL   I  F+ 
Sbjct: 573  ---RMGSYVSVHTSYTQRCIYIHTDGGRLCRPYVIVENRRPLVKQHHLDELNRGIRKFDD 629

Query: 607  VFMEIRCPDGGDGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRN 656
              ++            ++F A          TH EI    +L V A L PY  HNQSPRN
Sbjct: 630  FLLDGLIEYLDVNEENDSFIAWNEDQIEDRTTHLEIETFTLLGVCAGLVPYPHHNQSPRN 689

Query: 657  MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
             YQC M KQ MG        R D  +Y+L  P  P+V++ T      D+ P G NA VAV
Sbjct: 690  TYQCAMGKQAMGMIGYNHNNRIDSLMYNLVYPHAPMVKSKTIELTNFDKLPAGQNATVAV 749

Query: 717  LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DRGQKLFRRNKDAKSL 775
            ++Y+GYD+EDA+ILNK+S+DRG     +Y+     +    N+  DR     +     K +
Sbjct: 750  MSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDRIMGPMKDALTNKVI 809

Query: 776  --HSVIDSDGLPYVGQ-------MIHPGEPYCSIYD-------KTTNSWRTNSRKGSESV 819
              H V+D+DG+   G+       MI+   P  +  +       +   +    S KG E  
Sbjct: 810  FKHDVLDTDGIVAPGEQVQNKQIMINKEMPAVTSMNPLQGQSAQVPYTAVPISYKGPEPS 869

Query: 820  FVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVT 879
            +++ V V     ++   K  I  R TR P  GDKFSSRHGQKGV   +    DMPF+   
Sbjct: 870  YIERVMVSANAEEDFLIK--ILLRQTRIP-RGDKFSSRHGQKGVTGLIVEQEDMPFNDF- 925

Query: 880  GMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESK 939
            G+ PD+I+NPH FPSRMT+   LE +  K G L GKF   T F  S              
Sbjct: 926  GICPDMIMNPHGFPSRMTVGKTLELLGGKAGLLEGKFHYGTAFGGSK------------- 972

Query: 940  SLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTG 999
              V+++   L   GFNY G +  YSG+ GT L   I+ GPVYYQ+L+HMV DK   R+ G
Sbjct: 973  --VEDIQAELERHGFNYVGKDFFYSGITGTPLEAYIYSGPVYYQKLKHMVQDKMHARARG 1030

Query: 1000 TMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSV 1059
                +TRQP +GR R GG+R GEMERD L+++GA+ L+ +RL   SD    DVC  CG +
Sbjct: 1031 PKAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMISSDAFEVDVCRTCGRM 1090

Query: 1060 LTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
               ++                        CH CQ+S  +  ++MPY  + L  EL +MN+
Sbjct: 1091 AYCSW------------------------CHFCQSSANVSKISMPYACKLLFQELTSMNV 1126


>gi|303390954|ref|XP_003073707.1| DNA-directed RNA polymerase subunit beta [Encephalitozoon
            intestinalis ATCC 50506]
 gi|303302855|gb|ADM12347.1| DNA-directed RNA polymerase subunit beta [Encephalitozoon
            intestinalis ATCC 50506]
          Length = 1140

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 322/1134 (28%), Positives = 519/1134 (45%), Gaps = 144/1134 (12%)

Query: 36   DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN---FGQFPVMLKTRRCHLQGADSQK 92
            +  R   ++Y   L  DV  + +     V + +++   FG  PVML++  C L G   + 
Sbjct: 93   NEARIRDLTYASPLFIDVTKETISELGVVDKHKYSRVPFGSLPVMLRSSYCVLYGLSDKD 152

Query: 93   LVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCV 152
            L+ L E   + GGYFI+NG E+V    I+ ++    + V    + +   YT  A  IR V
Sbjct: 153  LIDLGECPYDQGGYFIVNGSEKV----IVAQERMASNTVYVFKKAQPATYTHYAE-IRSV 207

Query: 153  ----RKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
                 ++ S++++KL     G +R+   L  ++  +P+ ++ +AL   +D EI +H+   
Sbjct: 208  PEKSSRNPSTLSMKLCRS-PGVIRVSLPLVKQD--IPLFVLYRALGFLSDKEIIDHI--L 262

Query: 209  Y---DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSE 265
            Y   DE ++  K ++   +V          VQD ++      L +IG+   PV  G   E
Sbjct: 263  YEDDDEMFELLKESIEEGMV----------VQDQNVA-----LDYIGKRSAPV--GTPQE 305

Query: 266  SYYAVAETVIRDYIFVHLNDN----NDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEI 321
                +A+ ++   +  H+         K   + +++Q+L  +       D+ D    + +
Sbjct: 306  KRIIIAKDLLAKEVLPHIGTQEFCETKKAYFIGYIVQRLLLVALGRKNPDDRDHYGKKRM 365

Query: 322  LLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTS 381
             L G L+    +   +       + +Q  IEN  +    FN+A   K      +  I   
Sbjct: 366  DLSGPLLASLFRTLFKKLCADTTRHMQKCIENGRE----FNIALGLK------ASIITQG 415

Query: 382  IETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKL 441
                L TG    Q    +Q RAG      R NF+  +S  R V+      G +  + R+L
Sbjct: 416  FRYALATGNWGDQAKA-MQTRAGVAQVLNRYNFVSTLSHLRRVNTPIEKEG-KLAAPRQL 473

Query: 442  LPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGM 501
                WG +CP  TP+G+ CGL+ +++    + S   S G + +F          L   G 
Sbjct: 474  HNTHWGMVCPAETPEGQACGLVKNLSLMAYI-SVGSSSGPLVEF----------LEECG- 521

Query: 502  IPSLPKLVKSGPPAVLSVLLDGRVVGV--IPSSEIEKVVAHLRRLKVSAASVIPDDLEVG 559
            + SL ++      A   + ++G  VG+   P   I+ +    R L++     I  D+   
Sbjct: 522  VESLEEISTPQLNAATKIFVNGIWVGIHSDPVYLIKSLKLLRRSLEMDKEVSIVRDIREK 581

Query: 560  YVPLSLGGAYP--------GLYLFTSPPKFVRPVR-NISLPSEESQN-IELIGPFEQ--- 606
             + +      P           L  +P    R  R  I   +  S+  IE +   E+   
Sbjct: 582  EIRIQSDAGRPCRPLLVVKNNELVITPEDIKRLKRGEIKWDNLISEGFIEFLDVEEEEMS 641

Query: 607  -VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQ 665
             + M  +  +            TH EIHP  +L + A+  P+ DHNQSPRN YQ  M KQ
Sbjct: 642  MIAMNTKALEESKKASDVKISYTHCEIHPALILGICASTIPFPDHNQSPRNTYQSAMGKQ 701

Query: 666  TMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDME 725
             MG        R D     L  PQ P+V T +       E P+G NA+VA+  Y+GY+ E
Sbjct: 702  AMGIYATNFLLRMDTLSNILFYPQKPLVTTKSMEYLRFKELPSGQNALVAIACYSGYNQE 761

Query: 726  DAMILNKSSVDRGMCHGQIYQTETID-------LSDDGNKVDRGQKLFRRNKDAKSLHSV 778
            D++I+N+S++DRG+     Y+T T         ++++  K  RG  L  +N +    ++ 
Sbjct: 762  DSIIMNQSAIDRGLFRSFFYRTYTDQESMSRPGVNEEFCKPSRGTVLRMKNLN----YNK 817

Query: 779  IDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSR--KGSESVFVDYVA 825
            +D DGL             +G++    +P  S  +     ++ +S   + +E+  VD V 
Sbjct: 818  LDEDGLISPGTRVTGDDVLIGKITPILDPERSTKEAPVYVYKDSSTAMRRTETGIVDTVI 877

Query: 826  VDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDL 885
            V  K+       + I+ R  R P +GDKF+SRH QKG         DMPF+   G+ PD+
Sbjct: 878  VTNKDGYKF---SKIKVRSGRIPQMGDKFASRHAQKGTIGITLRQEDMPFTS-DGIVPDI 933

Query: 886  IINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDEL 945
            IINPHA PSRMTI  L+E +  K  ++ G+  DATPF++                 V+E+
Sbjct: 934  IINPHAIPSRMTIGHLIECLLGKVSAMSGEEGDATPFSDMT---------------VNEI 978

Query: 946  GEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQIT 1005
               L++ GF   G+EV+Y+G+ G +L  ++F GP YYQRL+HMV DK   R+ G +  +T
Sbjct: 979  SAKLKSYGFQQRGLEVMYNGMTGRKLRAQVFFGPTYYQRLKHMVDDKIHARARGPLQILT 1038

Query: 1006 RQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFI 1065
            RQP++GR R GG+RFGEMERD +++HGA+  L +RL   SD +   VC+ CG        
Sbjct: 1039 RQPVEGRSRDGGLRFGEMERDCIISHGASAFLKERLMDVSDAYSCFVCNFCG-------- 1090

Query: 1066 HPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
                  +  +GG       K   C  C  +  +  + +PY F+ L  EL  MNI
Sbjct: 1091 ------LLAMGG------SKVNECKGCNNTTNVSMIEIPYAFKLLVQELMGMNI 1132


>gi|348667429|gb|EGZ07254.1| hypothetical protein PHYSODRAFT_340380 [Phytophthora sojae]
          Length = 1158

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 359/1233 (29%), Positives = 529/1233 (42%), Gaps = 223/1233 (18%)

Query: 9    FEPLRELVRHHIESFDYM--------------------------------------LDE- 29
            F  LR LV+ HI+SFDY                                       +DE 
Sbjct: 30   FLQLRGLVKQHIDSFDYFTSVDMRNIVRAQANNVVRSDADPKFFLQYTDIQLGAPSIDEE 89

Query: 30   ---GLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQ 86
                 S     CR    +Y   +   V  +Y      V   +   G+ P+ML++ RC L 
Sbjct: 90   AFVSASVTPHQCRLRDRTYAAPVYVSV--RYRRGNKIVTNNKVLIGRIPIMLRSSRCVLA 147

Query: 87   GADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKA 146
            G     L  LKE   + GGYFI+ G+E+V   V++ +Q     + ++      +G  +  
Sbjct: 148  GKSEAALAKLKECPYDPGGYFIVRGVEKV---VLIHEQ-----LSKNRVIIEEDGKRNVC 199

Query: 147  VVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLT 206
              I     ++ S T    +L  G V L     G +  +P+ IV + +   +D EI +   
Sbjct: 200  ASITSSTHERKSRTN--IFLNKGRVYLKSNSFGSD--IPIVIVFRGMGVESDQEIVS--- 252

Query: 207  CCYDEKYKKEKGAVGS-PLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV--IDGL- 262
                         VGS P + + +     E  DL + T+ Q L++IG     +  I  + 
Sbjct: 253  ------------LVGSEPDICDAMSASFEEASDLKVFTQQQALEYIGSKMNTLTKIGAMG 300

Query: 263  -----------QSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQK-----LFSLVDH 306
                       Q  +    A + + + +  H+   N  F L    +       LF+  D 
Sbjct: 301  GRNRGGAGRPQQDRNLVDAARSALANLVLNHVPCENFNFRLKSIYVAHIVRRILFTDKDR 360

Query: 307  TSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANI 366
            T + D+ D   N+ + L G L+++ L E L        K   D + +   +   F++  I
Sbjct: 361  TRL-DDKDYYGNKRLELAGQLLSL-LFEDLFKRFNSDLKRQADMVLSKPNRASVFDI--I 416

Query: 367  KKVMEKNPSKQIGTSIET---MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRA 423
            K V     ++    ++ T    LK  R+          RAG T    RL+++  +     
Sbjct: 417  KCVRTDTITQGFYHALSTGNWTLKRFRM---------DRAGVTHVLSRLSYMSALGMMTR 467

Query: 424  VHRGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNI 482
            +   + F   R  S  R L P  WG LCP  TP+GE CGL+ ++   C V S        
Sbjct: 468  I--SSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNLALLCHVTS-------- 517

Query: 483  RDFSKMRTSILRVLIGVGMIP-SLPKLVKSGPPAVLSVLLDGRVVG--VIPSSEIEKVVA 539
                +    I R+   +G+   SL    +    +   V+L+G ++G  V P +     V 
Sbjct: 518  ---DEEPGPIKRLCFDLGVTDVSLSSGEEINHASNYLVMLNGVIIGTHVNPRA----FVT 570

Query: 540  HLRRLKVSA-----ASVIPDDLEVGYVPLSLGGAYPGLYLFTSP------------PKFV 582
             LRR++ +       SV+  D++      S GG      L   P             +  
Sbjct: 571  RLRRIRRAGLIGEFVSVMIHDVQRVVYIASDGGRVCRPLLLIDPVTHRTRLTQRHLDELR 630

Query: 583  RPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVA 642
              VR++S    E   +E +   E+    +   +   G R      TH EI P  +L VV+
Sbjct: 631  SGVRDLSSLIVEG-CVEYVDVNEENNCLVTLHESEIGDR-----TTHLEIDPVTILGVVS 684

Query: 643  NLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYG 702
             L PY  HNQSPRN YQC M KQ +G        R D  LY +  PQ P+V+T       
Sbjct: 685  GLIPYPHHNQSPRNTYQCAMGKQAIGTIAMNQFERIDTLLYTMVYPQMPMVKTRVLDLVN 744

Query: 703  IDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGN-KVDR 761
             D  P G NAIVAV++Y+GYD+EDA++LNK+S+DRG     +++     +    N   DR
Sbjct: 745  FDRVPAGQNAIVAVMSYSGYDIEDAIVLNKASLDRGFGRCMVFKKYQTMIKKYANGSYDR 804

Query: 762  --------------GQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT--- 804
                          G  +  RN    SL    D+DG+  VG ++  G    +    T   
Sbjct: 805  IVGPPDFDSLAAPGGAGMGFRNAKYSSL----DADGISRVGGIVQNGAIMINKEQPTQFN 860

Query: 805  -----------TNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDK 853
                       T S    + KG    +VD V +    + +   K  IR   TR P IGDK
Sbjct: 861  DSVDGRDPLDVTYSPSPTTYKGPIPAYVDKVLLTSSEANHFLVKVLIR--QTRRPEIGDK 918

Query: 854  FSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLH 913
            FSSRHGQKGVC  +    DMPF+   G+ PDLI+NPH FPSRMT+  ++E +A K G L 
Sbjct: 919  FSSRHGQKGVCGTIRQQEDMPFND-QGICPDLIMNPHGFPSRMTVGKMIELIAGKAGVLT 977

Query: 914  GKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTC 973
            G+    T F    K  + D   D S+ LV          GFNY G + L SG+ G  + C
Sbjct: 978  GRRAYGTAFGE--KYGSADHVLDCSRELVKN--------GFNYAGKDYLTSGITGEPIEC 1027

Query: 974  EIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGA 1033
             IF+GP+YYQ+L+HMV DK   R+ G    +TRQP +GR R GG+R GEMERD L+ +GA
Sbjct: 1028 YIFMGPIYYQKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGA 1087

Query: 1034 AYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQ 1093
            + LL +RL   SD   ADVC  C                R +G         +  C  C+
Sbjct: 1088 SMLLMERLMLSSDAFSADVCQGC----------------RMLG--------YEGWCQHCK 1123

Query: 1094 TSKGMETVAMPYVFRYLAAELAAMNI--KITLQ 1124
            + + + ++ +PY  + L  EL AMNI  ++TL+
Sbjct: 1124 SEEKVVSIRIPYACKLLFQELQAMNIVPRLTLK 1156


>gi|157870530|ref|XP_001683815.1| putative RNA polymerase I second largest subunit [Leishmania major
            strain Friedlin]
 gi|68126882|emb|CAJ04831.1| putative RNA polymerase I second largest subunit [Leishmania major
            strain Friedlin]
          Length = 1616

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 260/793 (32%), Positives = 407/793 (51%), Gaps = 99/793 (12%)

Query: 401  QRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPC 460
            Q +G+ V AE LNF RF    R VHRG + A +R++ VRK   E++GF+C V +PDGE C
Sbjct: 852  QTSGWVVMAEHLNFYRFFEQLRCVHRGKTIADMRSSEVRKYPCEAYGFICMVQSPDGEDC 911

Query: 461  GLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVL 520
            G+LNH++    V++   +  +    +++R  + + + GV    +L  +V      V  V 
Sbjct: 912  GVLNHLS----VSTISSNSPDAAMTAQLREIVRKAVPGVRSRATLSTVVDQLCETV-PVW 966

Query: 521  LDGRVVGVIPSSEIEKVVAHLR-------RLKVSAASVIP-------DDLEVGYV-PLSL 565
            ++G ++G +  ++  +  A LR       R +V    ++          LEV YV P S 
Sbjct: 967  MEGELLGYLSPADAVEAAATLRERKALTLRSQVHVTGIVRRKDASPLHTLEVVYVAPKSK 1026

Query: 566  GGAYPGLYLFTSPPKFVRPVRNISLPSEESQN-----IELIGPFEQVFMEIRC--PDGGD 618
              A  GLY+F    + +RPV+ +     +        +  IG +EQ +++I     D  D
Sbjct: 1027 DPA--GLYVFYDCGRLMRPVQRLESSVRKDATHLPFPLVFIGTWEQSWLDIAAVPSDPLD 1084

Query: 619  GGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRA 678
               +      + E + T ++S+ +   P+ +HN SPRN++QC ++KQ+ G  +QAL +R 
Sbjct: 1085 AVVQLNRKYEYMEQNGTNLISLTSATIPFFEHNCSPRNLFQCGLSKQSSGTQLQALAWRK 1144

Query: 679  DQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRG 738
            + KL+    PQ  I RT     YG+D+   G NA++A+LAYTGYDM+DA+I+N ++  RG
Sbjct: 1145 EAKLFRTYCPQRYISRTLPMDYYGLDDVNLGVNAVIAILAYTGYDMDDAVIINSTAAQRG 1204

Query: 739  MCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLP------------Y 786
            M    +   + +  S  G+  D            +   + ++++GLP            +
Sbjct: 1205 MLTAGVTVAKIVTASGKGSDKDDVFVFHNLLSTGERFTAELEANGLPPKRANASLDAFSF 1264

Query: 787  VGQMIHPG-----EPYC--------------SIYDKT---TNSWRTNSRKGSESVFVDYV 824
                 +PG     + YC              ++Y+ T      WR +  KG E  +V  V
Sbjct: 1265 DRDHKYPGLRDNNDVYCCAKRVERVDPFTNKAVYEYTRHHATKWR-HFDKG-EDAWVQQV 1322

Query: 825  AVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPD 884
             + +  S   P    + FR  R P +GDKFSSRHGQKG         D+PF+  +G+ PD
Sbjct: 1323 -IPLVYSGPDPTSVLMIFRIPRPPTVGDKFSSRHGQKGTLPLHIRSHDLPFATASGITPD 1381

Query: 885  LIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDE 944
            +IINPHAFPSRMT+ M+LE + AK G++ G+F+D + ++            DE   + + 
Sbjct: 1382 VIINPHAFPSRMTVGMVLEIMTAKVGAIEGRFIDNSAWST----------VDEQPRVAEL 1431

Query: 945  LGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRS---TGTM 1001
            +GE L   G+N +G E L  G+ G E+  ++F+G   YQRLRHMVSDK+Q R+     T 
Sbjct: 1432 IGEALVKAGYNRYGREHLIDGISGEEMKADVFMGICGYQRLRHMVSDKWQARARTDAHTY 1491

Query: 1002 DQITR--QPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSV 1059
              +T+  QP+KGRKR GG+R GEMERD LL+HG + ++ DRL   SD   A +C  CGS+
Sbjct: 1492 RAVTKTGQPVKGRKRHGGVRVGEMERDGLLSHGISEVVVDRLLHVSDKTKAFICPRCGSL 1551

Query: 1060 LTATFIHPQKRAIREIGGLPPARAPKKVTCHAC-----QTSKGMETVAMPYVFRYLAAEL 1114
            L+       +R   E G           TC  C     +++  +  V +P V R  AAEL
Sbjct: 1552 LSL-----YERHATEYGTWR--------TCRFCGAGADESTDSIAMVEIPQVLRLWAAEL 1598

Query: 1115 AAMNIKITLQLGD 1127
             ++ I++ L+  +
Sbjct: 1599 TSIGIRVVLKTSE 1611



 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 89/172 (51%), Gaps = 14/172 (8%)

Query: 26  MLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERF--NFGQFPVMLKTRRC 83
           ML    +E F   RQ ++       A V++   D   P  +E+F  NF  FP M+K  RC
Sbjct: 431 MLRTLSTEYFALMRQLRV-------APVDYDTYDYLVPS-KEQFWVNFASFPEMVKGARC 482

Query: 84  HLQGADSQKLVSLK--EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREG 141
            L+  D+ +L   +  EE  E+GGYFI+NG ER+ R++++ + N P+++ R  F  +   
Sbjct: 483 ALRNVDA-RLDHFRALEEQKEVGGYFIMNGGERILRALLMQRCNVPINIYREKFVTQGPH 541

Query: 142 YTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKAL 193
           ++ KAVVIRC R    +     YY   G V   F  +   + LP  ++L A+
Sbjct: 542 FSAKAVVIRCKRPSGLTAQNYFYYTTQGEVIFSF-ARKVVWHLPAPLLLNAM 592


>gi|393235423|gb|EJD42978.1| DNA-directed RNA polymerase [Auricularia delicata TFB-10046 SS5]
          Length = 1129

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 338/1216 (27%), Positives = 527/1216 (43%), Gaps = 206/1216 (16%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
            F  ++ LV+ HI+SF+Y +D  L+ +                                  
Sbjct: 22   FLRVKGLVKQHIDSFNYFVDVDLNNILKANNKVTSDVDPRFWLKYTDIRVGRPDRTDADA 81

Query: 37   --------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGA 88
                     CR    +Y+  ++  V  QY      V ++    G+ P+ML++ +C L G 
Sbjct: 82   IDRSITPHECRLRDTTYSAPILVTV--QYTRGKYVVKKQNVTIGRMPIMLRSNKCVLTGM 139

Query: 89   DSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVV 148
            +  +L    E   + GGYFI+ G E+V    IL ++    + +    RD  +G    +V 
Sbjct: 140  NEAQLARAIECPLDPGGYFIVKGTEKV----ILVQEQLSKNRIIVE-RDPTKGVVQASVT 194

Query: 149  IRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--------LPVGIVLKALVDTNDLE 200
                      +  K Y +           +G  YL        +P+ I LKAL   +D E
Sbjct: 195  ----SSTHGGMKTKTYVVTK---------KGNIYLRHNSIHEDVPIVIALKALGLQSDKE 241

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ---- 256
            I   +T    E+++    ++ SP         L E   L + TR Q L +IG   +    
Sbjct: 242  IL-LVTAGGTEEFR----SIFSP--------NLEEASKLGVFTRQQALDYIGARVKINRR 288

Query: 257  -------PVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSV 309
                   P  D L++ +      TVI  ++ V   D   K   +  M +++   V    +
Sbjct: 289  VIGPRRPPWEDALEALA------TVILAHLPVENFDFRPKAVFVATMTRRVLMAVQDEKL 342

Query: 310  SDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKV 369
             D+ D + N+ + L G L+ +  ++  + +  + K  I D++     +   F+     + 
Sbjct: 343  VDDRDYVGNKRLELAGQLLALLFEDLFKRFNTELKSSI-DKVLKKPSRTSEFDAGQTLQF 401

Query: 370  MEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGAS 429
            M       I       + TG  + +      +RAG T    RL+F+  +     +   + 
Sbjct: 402  M----GDHITAGFVRAISTGNWSLKRFK--MERAGVTHVLSRLSFIAALGMMTRIT--SQ 453

Query: 430  FAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKM 488
            F   R  S  R L P  WG LCP  TP+GE CGL+ ++     + +  +    IR     
Sbjct: 454  FEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVEEEPIIR----- 508

Query: 489  RTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSA 548
                L  ++GV  +  L    +        V ++G ++G+  +    + VA LR+L+   
Sbjct: 509  ----LAFMLGVEDV-CLATGAEMYEHNNFMVHVNGLIIGLTRTPL--RFVAQLRKLR--R 559

Query: 549  ASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNIS--LPSEESQNIELIGPFE- 605
            A  I +     +V + +   +  +Y+     +  RP+  +    P    +++EL+   + 
Sbjct: 560  AGRISE-----FVSVYINHHHRAVYIACDGGRICRPLIIVERGQPLVSVEHVELLKAGKM 614

Query: 606  --QVFMEIRCPDGGDGGRRN---------------AFPATHEEIHPTGMLSVVANLTPYS 648
                F+++   +  D    N               +   TH EI P  +L  VA L PY 
Sbjct: 615  NFDSFLKLGLVEYLDVNEENDSRIALYERDIVLTGSGRTTHLEIEPFTILGAVAGLIPYP 674

Query: 649  DHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPT 708
             HNQSPRN YQC M KQ +G        R D  LY L  PQ P+V+T T    G +  P 
Sbjct: 675  HHNQSPRNTYQCAMGKQAIGAIAYNQLNRIDTLLYLLVYPQKPMVKTRTIELVGYERLPA 734

Query: 709  GTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DRGQKLFR 767
            G NA VAV++Y+GYD+EDA+ILNK+S+DRG    Q+ +     +    N   DR     +
Sbjct: 735  GQNATVAVMSYSGYDIEDALILNKASLDRGYGRCQVMRKNVTMIRKYPNGTHDRLADAPK 794

Query: 768  -RNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT-------------TNSWRTN-- 811
              N + +  + +I  DG+  VG+ + PG+ Y +    T               S+R    
Sbjct: 795  DENGNVQKRYDIIQMDGIAGVGERVDPGDIYVNKQTPTNANDNSAAMDGAVAASYRNTPM 854

Query: 812  SRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDI 871
            S K   + ++D V +    + N   K  I  R TR P +GDKFSSRHGQKGVC  +    
Sbjct: 855  SYKSPVAGYIDKVMLSETENDNTLVKVLI--RQTRRPELGDKFSSRHGQKGVCGLIVNQE 912

Query: 872  DMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNG 931
            DMPF+   G+ PD I+NPH FPSRMT+  ++E ++ K G L GK    T F  S      
Sbjct: 913  DMPFND-QGVCPDSIMNPHGFPSRMTVGKMIELISGKAGVLTGKLRYGTAFGGSK----- 966

Query: 932  DTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSD 991
                      V+++ ++L   GF+Y G ++L SG+ G  L   +F GP+YYQ+L+HMV D
Sbjct: 967  ----------VEDMSKILIEHGFSYSGKDMLTSGITGESLEAFVFFGPIYYQKLKHMVMD 1016

Query: 992  KFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVAD 1051
            K   R+ G    +TRQP +GR R GG+R GEMERD L+ +GA  LL +RL   SD     
Sbjct: 1017 KMHARARGPRATLTRQPTEGRSRDGGLRLGEMERDCLIGYGATQLLLERLMISSDKFEVC 1076

Query: 1052 VCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLA 1111
             C  CG              I    G           C  C+TS+ +  + +PY  + L 
Sbjct: 1077 ACETCG--------------IMGYNGW----------CPYCKTSQKVAKLTIPYAAKLLF 1112

Query: 1112 AELAAMNIKITLQLGD 1127
             EL AMN+   + L D
Sbjct: 1113 QELMAMNVMPRMVLED 1128


>gi|324120594|dbj|BAJ78688.1| RNA polymerase II second largest subunit [Metriocampa sp. 44]
          Length = 1176

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 330/1147 (28%), Positives = 513/1147 (44%), Gaps = 148/1147 (12%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   V    ++   G+ P+ML++  C L G   
Sbjct: 110  MPNEARLRNLTYSAPLYVDITKSIVKEGEEAVETQHQKTFIGKIPIMLRSTYCLLNGLTD 169

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  Y  K+ +  
Sbjct: 170  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKYAY--KSEIRS 224

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  L  G   +     G+  +         +P+ IV +AL    D +
Sbjct: 225  CLEHSSRPTSTLWVNMLARGGQSIKKSAIGQRIIAIVPYIKQEIPIMIVFRALGFVADRD 284

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAE---VQDLSLTTRLQCLQHIGEHFQP 257
            I  H+   +D+           P + E VK  L E   VQ+ ++      L  IG   + 
Sbjct: 285  ILEHIIYDFDD-----------PEMMEMVKPSLDEAFVVQEQNVA-----LNFIGA--RG 326

Query: 258  VIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNP 313
               G+  E     A  +++  +  H+  ++     K   L +M+ +L          D+ 
Sbjct: 327  ARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDR 386

Query: 314  DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKN 373
            D   N+ + L G L+    +   ++ L++ +   Q  I + GK F+   LA IK      
Sbjct: 387  DHYGNKRLDLAGPLLAFLFRGLFKNLLKEVRMYAQKFI-DRGKDFNL-ELA-IK------ 437

Query: 374  PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
             ++ I   +   L TG    Q     Q RAG +    RL F   +S  R V+      G 
Sbjct: 438  -TRIITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG- 494

Query: 434  RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
            +    R+L    WG +CP  TP+G   GL+ ++         Y S G+        + IL
Sbjct: 495  KLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMA-----YISVGS------QPSPIL 543

Query: 494  RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VS 547
              L    M  +L ++  S       + ++G  VG+    + E++++ LR+L+      VS
Sbjct: 544  EFLEEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMSTLRKLRRQMDIIVS 600

Query: 548  AASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN---------- 597
              S+I D  +      +  G      L     K     R+I +  E   N          
Sbjct: 601  EVSMIRDIRDREIRIYTDAGRICRPLLIVEGGKLSLKKRHIEMLKEREYNNYGWQDLVAS 660

Query: 598  --IELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQ 652
              +E I   E+   M    P+     +  A+  T  H EIHP  +L V A++ P+ DHNQ
Sbjct: 661  GVVEYIDTLEEETVMIAMSPEDLRQDKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQ 720

Query: 653  SPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNA 712
            SPRN YQ  M KQ MG  +     R D   + L  PQ P+V T +       E P G N+
Sbjct: 721  SPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLFYPQKPLVTTRSMEYLRFRELPAGINS 780

Query: 713  IVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVDRGQKLFRRNKD 771
            IVA+  YTGY+ ED++I+N S+V+RG      Y+  +  +    G++ ++ +K  R +  
Sbjct: 781  IVAIACYTGYNQEDSVIMNTSAVERGFFRSVFYRAYKDQECKRSGDQEEQFEKPTRESCQ 840

Query: 772  A--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN-----------SWRTNSR----- 813
                +++  +D DG+   G  +   +    I  KT             + R + R     
Sbjct: 841  GMRNAIYDKLDDDGIIAPGIRVSGDD---VIIGKTITLPITDDELEGTTKRFSKRDASTF 897

Query: 814  -KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDID 872
             + SE+  VD V V + N     +   IR R  R P IGDKF+SRHGQKG C   +   D
Sbjct: 898  LRNSETGIVDQVMVTLNNEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQED 955

Query: 873  MPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGD 932
            MPF+   G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF ++V      
Sbjct: 956  MPFT-CEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDTVN----- 1009

Query: 933  TGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDK 992
                     V ++  +L+  G+   G EV+Y+G  G ++  +IF+GP YYQRL+HMV DK
Sbjct: 1010 ---------VQKISNLLQEYGYQLRGNEVMYNGQTGRKINAQIFLGPTYYQRLKHMVDDK 1060

Query: 993  FQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADV 1052
               R+ G +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +RL   SD +   V
Sbjct: 1061 IHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRVHV 1120

Query: 1053 CSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAA 1112
            C+LCG +  A   +                      C  C+    +  V +PY  + L  
Sbjct: 1121 CNLCGLIAIANLRN------------------NTFECKGCKNKTQISQVRLPYAAKLLFQ 1162

Query: 1113 ELAAMNI 1119
            EL AMNI
Sbjct: 1163 ELMAMNI 1169


>gi|347522774|ref|YP_004780344.1| DNA-directed RNA polymerase subunit B [Pyrolobus fumarii 1A]
 gi|343459656|gb|AEM38092.1| DNA-directed RNA polymerase subunit B [Pyrolobus fumarii 1A]
          Length = 1168

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 343/1172 (29%), Positives = 516/1172 (44%), Gaps = 193/1172 (16%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTR-----RCHLQGADSQ 91
             CR   ++Y   +   V    L  G  V  +    G  P+ML+++     RC  +  + +
Sbjct: 95   ECRIRDLTYEAPIRVRVR---LIEGVVVDEQEVVLGMLPIMLRSKADPLARCFYERGNVK 151

Query: 92   K----LVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAV 147
            +    L+   E+  + GGYFI+NG ERV         N    +V    +     +T K +
Sbjct: 152  ECYELLIQKGEDPRDPGGYFIINGSERVVVIQEEQVVN--RVLVDKGRQQTGVKFTAKVI 209

Query: 148  VIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTC 207
                     + +  +L   ++    L   +      +P  I+L+AL    D +I   ++ 
Sbjct: 210  SF------HAGLRYQLILDMHKDGTLHVSMTRAITKIPFVILLRALGLERDRDIVLAIST 263

Query: 208  CYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESY 267
                           P +   +   L + +  ++ T+ + L+ IG  F+  I G  SE  
Sbjct: 264  --------------DPEIQNMLYPSLEQAR--AIATQKEALEFIGARFREGI-GKPSEQR 306

Query: 268  YAVAETVIRDYIFVHLNDN-NDKFNLLIF---MLQKLFSLVDHTSVSDNPDSLQNQEILL 323
              VAE  + +++  HL     D+    +F   M +KL  L       D+ D   N+ +LL
Sbjct: 307  IRVAEHALDNFLLPHLGTRPEDRLRKALFLADMARKLLELAAGRRQPDDKDHYANKRLLL 366

Query: 324  PGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIE 383
             G LI I  +  +       + L QD                I+  +E+  ++    S  
Sbjct: 367  AGDLIAIVFRTAM-------RSLYQD----------------IRSQLERAKARGKRISPR 403

Query: 384  TMLK----TGRL--ATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS 437
            T+++    T +L  A  TG    QR G +   +R N+L  +S  R V    S +     +
Sbjct: 404  TVIRRDIITNKLHDALATGNWPGQRTGVSQLLDRTNWLSMLSHLRRVVSPLSRSQPHFEA 463

Query: 438  VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSR---GNIRDFSKM--RTSI 492
             R L    WG +CP  TP+G  CGL+ ++     +++  D +     IR+  ++     +
Sbjct: 464  -RDLHGTHWGRICPFETPEGPNCGLVKNLALMAYISAGVDEKEVEKVIRENFEIIDAEEL 522

Query: 493  LRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVI 552
            LR LI    +                V ++GR++G  P  E  K+   +RRL+       
Sbjct: 523  LRKLIETEDVSEFLPYYMEVTSKYTRVYINGRLIGYYPDGE--KLAQEIRRLRRE----- 575

Query: 553  PDDLEVGYVPLSLGGAY----PGLYLFTSPPKFVRP---VRNISLPSEESQNIELIGPFE 605
                  G +   +  AY      LY+ T P + +RP   V N  L   + ++IE I   E
Sbjct: 576  ------GKLHYEVNVAYYRDVNELYVNTDPGRVLRPLFVVENGKL-KLKPEHIEKIKKGE 628

Query: 606  QVFME------IRCPDGGDGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSD 649
              F +      +   D  +    NA+ A          TH EI    +  V A+  PY++
Sbjct: 629  WKFTDLLKHGIVELLDAEE--EENAYVALNPEDITPEHTHMEIWTPAIFGVTASTIPYAE 686

Query: 650  HNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTG 709
            HNQSPRN YQ  MAKQ +G      + RAD + + L  P+ P+V+T      G +  P G
Sbjct: 687  HNQSPRNTYQAAMAKQALGLYAANFQIRADTRGHLLHYPEKPLVQTRALDIIGFNNRPAG 746

Query: 710  TNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG---QIYQTETIDLSDDGNKVDRGQKLF 766
             N +VAVL++TGY++EDA+I+NKSS+DRG+      ++Y TE         K   GQK  
Sbjct: 747  QNMVVAVLSFTGYNIEDAIIMNKSSIDRGLARSTFFRLYATEE-------RKYSGGQKDL 799

Query: 767  -------RRNKDAKSLHSVIDS-----------DGLPYVGQMIHPGEPYC--SIYDKTTN 806
                   +R      + S+ID+           DG+      +  GE     +   K + 
Sbjct: 800  LGCIDDPQRRPGCIDIKSIIDAKPPIAYRKLDIDGIVSPEVEVESGEVLIGKTAPPKFSE 859

Query: 807  SWR----TNSRKGSESV--------FVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKF 854
             +R    +  R+  ESV         VD V +   N     +   +R R  R P  GDKF
Sbjct: 860  EFREIAVSTERRRDESVSVRHGERGTVDTVFITETNEGF--KLVKVRVRDLRIPEFGDKF 917

Query: 855  SSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHG 914
            +SRHGQKGV   L P  DMPF+   G+ PDLIINPHAFPSRMT+  LLE++A K  +L  
Sbjct: 918  ASRHGQKGVIGFLVPQYDMPFTE-DGITPDLIINPHAFPSRMTLGQLLETIAGKVAALSA 976

Query: 915  KFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCE 974
            + +DATPF                K  V+ L   L   GF+  G E++Y G  G  L   
Sbjct: 977  RLIDATPFF---------------KEPVENLQLELLKYGFSPDGTEIMYDGRTGEMLRHP 1021

Query: 975  IFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAA 1034
            +FIG VYYQ+L HMV+DK   R+TG    +TRQP +GR RGGG+RFGEMERD L+ HGAA
Sbjct: 1022 VFIGIVYYQKLHHMVADKIHARATGQTQLLTRQPTEGRARGGGLRFGEMERDCLVGHGAA 1081

Query: 1035 YLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQT 1094
             LL +R+   SD +V  VC LCG +    +    +RA                 C   + 
Sbjct: 1082 MLLRERMLESSDKYVMYVCELCGHI---AWFDRNRRAF---------------VCPIHKE 1123

Query: 1095 SKGMETVAMPYVFRYLAAELAAMNIKITLQLG 1126
               +  V +PY F+ L  EL +M I   L+L 
Sbjct: 1124 EGKISIVVVPYAFKLLLQELMSMGIMPRLRLA 1155


>gi|209489360|gb|ACI49130.1| hypothetical protein Cbre_JD16.002 [Caenorhabditis brenneri]
 gi|341883892|gb|EGT39827.1| hypothetical protein CAEBREN_00456 [Caenorhabditis brenneri]
          Length = 1152

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 326/1168 (27%), Positives = 523/1168 (44%), Gaps = 177/1168 (15%)

Query: 28   DEGLSEMFD-----HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRR 82
            +EGL+   D      CR   ++Y+  +  D+E  Y      V+++    G+ P+ML++ +
Sbjct: 89   EEGLNMTHDKITPQECRLRDMTYSAPISVDIE--YTRGNQRVLKKDLIIGRMPIMLRSSK 146

Query: 83   CHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGY 142
            C L+    + L  ++E   + GGYF++ G E+V    IL ++    + +    R+  +  
Sbjct: 147  CILRDLAEEGLARVQECPYDPGGYFVVKGSEKV----ILIQEQLSKNRIMVG-RNSSKEL 201

Query: 143  TDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---LPVGIVLKALVDTNDL 199
              + +     RK ++ VT          V+ G +L     L   +PV I+ KA+   +D 
Sbjct: 202  QCEVLSSTSERKSKTYVT----------VKKGKYLVRHNQLTDDVPVSIIFKAMGIESDY 251

Query: 200  EIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHI-----GEH 254
            +I +  T  ++EKY           VS   + I  E  +  + T+ Q L ++        
Sbjct: 252  DIVS--TIGHEEKY-----------VSAFAQTI-EECINAGVYTQQQALAYVTSKVKARK 297

Query: 255  FQPVIDGLQSESYYAV-------AETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHT 307
            F P    L   S   +       A   + + +  H+   +  F +    L ++   +  T
Sbjct: 298  FTP-FGSLPGTSVSVLTPPKEHEAVDFLSNSMITHIACPDGNFKMKAIYLGQMTRRLIQT 356

Query: 308  SVSDNP----DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNL 363
             + +N     D   N+ + L G L+ +  ++  + +  + K+     I +N         
Sbjct: 357  ELGENELDDRDFYGNKRLELAGSLLALLFEDVFKRFNSELKR-----IADNALMKTMAAP 411

Query: 364  ANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRA 423
             +I K M ++    I  +I   + TG    +      +R G T    RL+++  +     
Sbjct: 412  LDIVKHMRQD---MITNTIVNAMSTGNWIIKRFR--MERLGVTQVLSRLSYISALGMMTR 466

Query: 424  VHRGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNI 482
            ++  ++F   R  S  R L P  WG LCP  TP+GE CGL+ ++     + +  D +   
Sbjct: 467  IN--STFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALISHITTDSDEK--- 521

Query: 483  RDFSKMRTSILRVLIGVGMIPSLPKLVKS--GPPAVLSVLLDGRVVGVIPSSEIEKVVAH 540
                     +LR+L+  G +  L  +  S    P    + L+G ++G   + + E+VV  
Sbjct: 522  --------PVLRLLLNSG-VEDLNNVHFSHINKPENTLIFLNGVLIGT--AVDPERVVRA 570

Query: 541  LRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP--VRNISLPSEESQNI 598
            +R L+ S        L   +V +S       +++ +   +  RP  +     P    +N+
Sbjct: 571  VRDLRRSG-------LLSEFVSVSRSITNRSVFISSDGGRLCRPYIIVKDGKPMLTQENV 623

Query: 599  ELIGPFEQVFMEIRCPDGG-----DGGRRN-----------AFPATHEEIHPTGMLSVVA 642
              +   +++F +    D G     D    N               TH EI P  +L V A
Sbjct: 624  TELKEGKRIFEDF--VDDGIVEYLDVNEMNDALIAVYENEIGLETTHLEIEPFTLLGVCA 681

Query: 643  NLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYG 702
             L PY  HNQSPRN YQC M KQ MG      + R D  +Y L  PQ P+V++ T     
Sbjct: 682  GLIPYPHHNQSPRNTYQCAMGKQAMGTIAYNQQKRIDSIMYLLCYPQRPLVKSKTIELIN 741

Query: 703  IDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR 761
             ++ P G N I+AV++Y+GYD+EDA++LNK+S+DRG     +Y+          N+  DR
Sbjct: 742  FEKLPAGANGIIAVMSYSGYDIEDALVLNKASLDRGYGRCLVYKHVKGTARKYPNQTFDR 801

Query: 762  --GQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIY------DKTTNSWRTNSR 813
              G  L    K     H  +D +G+ + G  I P +   + +      D    S   N+ 
Sbjct: 802  LLGPALDPITKKPIMKHKNLDKEGIVFAGARILPKQTIINKHMPVVSGDNNPASASANT- 860

Query: 814  KGSESVFVDYVAVDMKNSKNLPQKA---------------NIRFRHTRNPIIGDKFSSRH 858
             G     VDY  V +      P  A                +  R TR P +GDKFSSRH
Sbjct: 861  IGIAGRQVDYKDVSVTYKTPTPSYAERVLLTYNEEEAHLFKVLLRQTRRPELGDKFSSRH 920

Query: 859  GQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMD 918
            GQKGVC  +    DMPF+ + GM PD+I+NPH +PSRMT+  L+E ++ K G ++G +  
Sbjct: 921  GQKGVCGLIAQQEDMPFNDL-GMVPDMIMNPHGYPSRMTVGKLMELLSGKAGVMNGTYHY 979

Query: 919  ATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIG 978
             T F           G D+ K + +EL       G+NY G ++L SG+ G  L+  I+ G
Sbjct: 980  GTAF-----------GGDQVKDVCEELAAR----GYNYMGKDMLTSGITGQPLSAYIYFG 1024

Query: 979  PVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLH 1038
            P+YYQ+L+HMV DK   R+ G    +TRQP +GR R GG+R GEMERD L+A+GA+ LL 
Sbjct: 1025 PIYYQKLKHMVLDKMHARARGPRAALTRQPTEGRSREGGLRLGEMERDCLIAYGASMLLI 1084

Query: 1039 DRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGM 1098
            +RL   SD    DVC+ CG + +  +                        C  C++SK M
Sbjct: 1085 ERLMVSSDEFKVDVCTGCGVIGSKGW------------------------CQKCRSSKSM 1120

Query: 1099 ETVAMPYVFRYLAAELAAMNIKITLQLG 1126
              + +PY  + L  EL +MNI   L L 
Sbjct: 1121 ANIKIPYACKLLFQELQSMNIVPRLDLA 1148


>gi|336468399|gb|EGO56562.1| hypothetical protein NEUTE1DRAFT_83883 [Neurospora tetrasperma FGSC
            2508]
 gi|350289345|gb|EGZ70570.1| putative DNA-directed RNA polymerase III second-largest chain
            [Neurospora tetrasperma FGSC 2509]
          Length = 1155

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 314/1133 (27%), Positives = 512/1133 (45%), Gaps = 136/1133 (12%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR   ++Y   +  +V+  Y    + +VR+     + PVMLK+ +C+L GA + ++    
Sbjct: 110  CRLRDLTYAAPV--EVDIAYTRDKNVIVRKNIPLCRIPVMLKSAKCYLNGATNAQMEVFN 167

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            E   + GGYF++ G E+V    IL ++    + +     ++  G           RK ++
Sbjct: 168  ECPLDPGGYFVIGGTEKV----ILIQEQLSKNRIIVEADEKTGGVMASVTSSTHERKSKT 223

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
             V LK         R+          +P+ IVLKA    +D +I   L C  D +Y+ + 
Sbjct: 224  YVVLK-------KDRIVLQHNTLSEPIPIVIVLKAFGGLSDNDII-ELVCGGDARYQDD- 274

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ-----PVIDGLQSESYYAVAE 272
                         I   E     + T+ Q L+++G   +     P        ++     
Sbjct: 275  -----------FLINFDEAGRAGVYTQQQALEYVGARVKMGGNRPKFGAAPRRNHAEEGL 323

Query: 273  TVIRDYIFVHLN----DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
              + + +  H+     D   K   +  M++++     +  + D+ D + N+ + L G LI
Sbjct: 324  DALANLVIAHVTVEGLDFYPKAVYIAMMVRRVLMAAQNPKLVDDRDFVGNKRLELAGQLI 383

Query: 329  TIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKT 388
            ++      ED  +K    ++  I+N  KK +  +  +    +  N    I   +   +++
Sbjct: 384  SLLF----EDLFKKFISDVKYNIDNFFKKPNRTSTYDPHGAIMAN-GHYISHGLNRAIQS 438

Query: 389  GRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPESWG 447
            G    +   ++  RAG T    RL+++  +     +   + F   R  S  R L P  WG
Sbjct: 439  GNWTVKR-FNMN-RAGITHVLSRLSYIAALGMMTRI--SSQFEKTRKVSGPRALQPSQWG 494

Query: 448  FLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPK 507
             LC   TP+GE CGL+ ++     + +      N+ +   ++  I      VG I     
Sbjct: 495  MLCTSDTPEGEACGLVKNLALMTHITT------NVPE-EPVKKMIFAADESVGPIREYTG 547

Query: 508  LVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGG 567
                   + + + L+G    V  + E ++  A  R L+     V P      +V + +  
Sbjct: 548  TEMHSKGSYI-IHLNGTPFAV--TREPKRFAARFRTLR-RRGWVSP------FVSIHINE 597

Query: 568  AYPGLYLFTSPPKFVRP---VRNIS--LPSEESQNIELIGPFEQVFMEIRCPDGGDGGRR 622
             +  +++ T   +  RP   V+N    L +E  + ++L       F+     +  D    
Sbjct: 598  HFSAVHIATDEGRICRPYIIVKNGKSMLKAEHLKMLQLGQATFDTFLTSGVVEYLDVNEE 657

Query: 623  N-----------AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSV 671
            N               TH EI P  +L  VA L P+  HNQSPRN YQC M KQ +G   
Sbjct: 658  NDTLVALQEDQITNSTTHMEIEPFTILGAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIA 717

Query: 672  QALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILN 731
                 R D  LY L  PQ P+V T T      D+ P G NA V V++Y+GYD+EDA++LN
Sbjct: 718  YNQFNRIDTLLYTLVYPQRPMVITKTIQLIHYDKLPAGQNATVVVMSYSGYDIEDALVLN 777

Query: 732  KSSVDRGMCHGQIYQTETIDLSDDGN-KVDRGQKLFRRNKDAKSL-HSVIDSDGLPYVGQ 789
            K+S+DRG    Q+++  T +L    N + DR   + +   D   + H+++D+DGL  VG 
Sbjct: 778  KASLDRGFGRCQVFRKYTAELQGYTNGRRDRVGGIMKDEDDKPIVKHAILDADGLAQVGS 837

Query: 790  MIHPGE-------PYCSIY-----DKTTNSWR---TNSRKGSESVFVDYVAVDMKNSKNL 834
             +  G+       P   I      D+ ++ +R   TN R  S+   +D V + +   +N 
Sbjct: 838  KVESGQTMIKKETPLDQISTGIAGDRGSDDYRDASTNYRI-SDPAIIDKVMISVNEREN- 895

Query: 835  PQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPS 894
             +   ++ R TR P +GDKFSSRHGQKGV   +  + DMPFS   G+RPD+I+NPH FPS
Sbjct: 896  -KLIKVQTRQTRRPELGDKFSSRHGQKGVVGIIVNEEDMPFSD-KGLRPDIIMNPHGFPS 953

Query: 895  RMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGF 954
            RMT+  L E +  K   + G+      F ++ +              V+ +G+ L   GF
Sbjct: 954  RMTVGKLFECLTGKASVIAGE--KDYGFGDAFR-----------SHPVESMGQALIDHGF 1000

Query: 955  NYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKR 1014
            ++ G +   SG+ G  +   I+ GP++YQRL+HMV DK   RS G    +TRQP +GR R
Sbjct: 1001 SWEGKDYFTSGITGEPMEAYIYNGPIFYQRLKHMVQDKMHSRSRGPRAILTRQPTEGRSR 1060

Query: 1015 GGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIRE 1074
             GG+R GEMERD L+A+GA+ LL +RL   SD    DVC  CG      +          
Sbjct: 1061 DGGLRLGEMERDCLIAYGASQLLLERLMISSDGTELDVCQECGLFGYKGY---------- 1110

Query: 1075 IGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
                          C+AC++++ +  + MPY  + L  EL +MN+ + L+L D
Sbjct: 1111 --------------CNACKSTRNVTQMTMPYACKLLVQELISMNVGVKLKLED 1149


>gi|389743088|gb|EIM84273.1| beta and beta-prime subunits of DNA dependent RNA-polymerase [Stereum
            hirsutum FP-91666 SS1]
          Length = 1141

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 337/1220 (27%), Positives = 521/1220 (42%), Gaps = 218/1220 (17%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMF--------------------------------- 35
            F  ++ LV+ HI+SF+Y +D  +  +                                  
Sbjct: 40   FLKVKGLVKQHIDSFNYFVDVDIKNILKANNKVTSDVDPRFWLKYTDIRVGFPDRTDADA 99

Query: 36   -------DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGA 88
                   + CR    +Y+  ++  V  QY    + V R   N G+ P+ML++ +C L G 
Sbjct: 100  IDKSVTPNECRLRDTTYSAPIV--VTIQYTRGKNVVRRPNVNIGRLPIMLRSNKCVLTGR 157

Query: 89   DSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVV 148
               +L  + E   + GGYF++ G E+V    IL ++        S  R   E    K VV
Sbjct: 158  SEAQLARMIECPLDPGGYFVVKGTEKV----ILVQEQL------SKNRIIVETDPVKGVV 207

Query: 149  -IRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--------LPVGIVLKALVDTNDL 199
               C       +  K Y             +GK YL        +P+ I LKAL   +D 
Sbjct: 208  QASCTSSTHGGLKSKTYVATK---------KGKIYLRHNSIHEDVPIVIALKALGIQSDK 258

Query: 200  EIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ--P 257
            EI   LT    E YK            +     L +   L + TR Q L+ IG   +   
Sbjct: 259  EIL-LLTAGNSEAYK------------DSFAPNLEDAARLGIFTRHQALEWIGSRVKINR 305

Query: 258  VIDGLQSESYYAVAE---TVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPD 314
             I G++  ++    E   T++  ++ V   D   K   +  M +++   V    + D+ D
Sbjct: 306  RIVGVRRPAWEEALEALATIVLAHVPVVGMDFRSKAIFVATMTRRVLMAVKDEKMVDDRD 365

Query: 315  SLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGK--KFDFFNLANIKKVMEK 372
             + N+ + L G L+ +  ++  + +    K  I   ++   +  +FD FN    +     
Sbjct: 366  YVGNKRLELAGQLLALLFEDLFKTFNTNLKSSIDKVLKKPSRTTEFDAFNTMQFQ----- 420

Query: 373  NPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAG 432
                 I +     + TG  + +       RAG T    RL+F+  +     +   + F  
Sbjct: 421  --GDHITSGFVRAISTGNWSLKRFR--MDRAGVTHVLSRLSFISALGMMTRI--SSQFEK 474

Query: 433  LRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS 491
             R  S  R L P  WG LCP  TP+GE CGL+ ++     + +  D    I+        
Sbjct: 475  TRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVDEEPIIK-------- 526

Query: 492  ILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV--IPSSEIEKVVAHLRRLKVSAA 549
             +  ++GV  I         GP   + V ++G ++G+   P+    + V + RRL+   A
Sbjct: 527  -VAYMLGVENIGQSTGTEIYGPNTFV-VNVNGTIIGLTRFPT----RFVHNFRRLR--RA 578

Query: 550  SVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP--VRNISLPSEESQNIELIGPFE-- 605
              + +     +V + +   +  + + +   +  RP  + +   P   S+++ L+   +  
Sbjct: 579  GRVSE-----FVSVYINHHHHTVNIASDGGRICRPMIIVDNGRPMVTSEHVSLLKKAKLE 633

Query: 606  -QVFMEIRCPDGGDGGRRN-----------AFPATHEEIHPTGMLSVVANLTPYSDHNQS 653
               F+     +  D    N               TH EI P  +L  VA L PY  HNQS
Sbjct: 634  FDDFLRQGLVEYLDVNEENDSYIALYEPDIVPTTTHLEIEPFTLLGAVAGLIPYPHHNQS 693

Query: 654  PRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAI 713
            PRN YQC M KQ +G        R D  LY    PQ P+V+T T    G D+ P G NA 
Sbjct: 694  PRNTYQCAMGKQAIGAIGYNQLNRIDTLLYLSVYPQQPMVKTKTIELVGYDKLPAGQNAT 753

Query: 714  VAVLAYTGYDMEDAMILNKSSVDRGMCHGQI----------YQTETIDLSDDGNKVDRGQ 763
            VAV++Y+GYD+EDA+ILNK+SVDRG    Q+          Y   T D   D    + G 
Sbjct: 754  VAVMSYSGYDIEDALILNKASVDRGYGRCQVLRKNATLIRKYPNGTFDRLADAPTDEEG- 812

Query: 764  KLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVF--- 820
                   + +  + ++  DGL  VG+ + PG+ Y +    T  +  T + + +   +   
Sbjct: 813  -------NVQKKYDIVQLDGLAGVGERVDPGDVYVNKQTPTNANDNTFTGQAASVPYKNA 865

Query: 821  -----------VDYVAV-DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLW 868
                       VD + + D +N + L     +  R TR P +GDKFSSRHGQKGVC  + 
Sbjct: 866  PMTYKSPVAGHVDKIMISDTENDQTL---IKVLIRQTRRPELGDKFSSRHGQKGVCGLIV 922

Query: 869  PDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKK 928
               DMPF+   G+ PD I+NPH FPSRMT+  ++E +A K G L GK    T F  S   
Sbjct: 923  NQEDMPFND-QGIVPDTIMNPHGFPSRMTVGKMIELLAGKAGVLAGKLQYGTAFGGSK-- 979

Query: 929  TNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHM 988
                         V+++  +L   GF+Y G ++L SG+ G  +   ++ GP+YYQ ++HM
Sbjct: 980  -------------VEDMSRILIENGFSYAGKDMLTSGITGEPMEAYVYFGPIYYQ-VKHM 1025

Query: 989  VSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYH 1048
            V DK   R+ G    +TRQP +GR R GG+R GEMERD L+ +GA  LL +RL   SD  
Sbjct: 1026 VMDKMHARARGPRATLTRQPTEGRSREGGLRLGEMERDCLIGYGATQLLLERLMISSDKF 1085

Query: 1049 VADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFR 1108
              + C  CG +    +                        C  C++SK M  + +PY  +
Sbjct: 1086 EVNACQECGLLGYNGW------------------------CTYCKSSKKMAQLTIPYAAK 1121

Query: 1109 YLAAELAAMNIKITLQLGDG 1128
             L  EL AMN+   L L D 
Sbjct: 1122 LLFQELMAMNVVPRLVLDDA 1141


>gi|85083820|ref|XP_957195.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Neurospora
            crassa OR74A]
 gi|7800864|emb|CAB91222.1| probable DNA-directed RNA polymerase III second-largest chain
            [Neurospora crassa]
 gi|28918282|gb|EAA27959.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Neurospora
            crassa OR74A]
          Length = 1155

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 314/1133 (27%), Positives = 512/1133 (45%), Gaps = 136/1133 (12%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR   ++Y   +  +V+  Y    + +VR+     + PVMLK+ +C+L GA + ++    
Sbjct: 110  CRLRDLTYAAPV--EVDIAYTRDKNVIVRKNIPLCRIPVMLKSAKCYLNGATNAQMEVFN 167

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            E   + GGYF++ G E+V    IL ++    + +     ++  G           RK ++
Sbjct: 168  ECPLDPGGYFVIGGTEKV----ILIQEQLSKNRIIVEADEKTGGVMASVTSSTHERKSKT 223

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
             V LK         R+          +P+ IVLKA    +D +I   L C  D +Y+ + 
Sbjct: 224  YVVLK-------KDRIVLQHNTLSEPIPIVIVLKAFGGLSDNDII-ELVCGGDARYQDD- 274

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ-----PVIDGLQSESYYAVAE 272
                         I   E     + T+ Q L+++G   +     P        ++     
Sbjct: 275  -----------FLINFDEAGRAGVYTQQQALEYVGARVKMGGNRPKFGAAPRRNHAEEGL 323

Query: 273  TVIRDYIFVHLN----DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
              + + +  H+     D   K   +  M++++     +  + D+ D + N+ + L G LI
Sbjct: 324  DALANLVIAHVTVEGLDFYPKAVYIAMMVRRVLMAAQNPKLVDDRDFVGNKRLELAGQLI 383

Query: 329  TIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKT 388
            ++      ED  +K    ++  I+N  KK +  +  +    +  N    I   +   +++
Sbjct: 384  SLLF----EDLFKKFISDVKYNIDNFFKKPNRTSTYDPHGAIMAN-GHYISHGLNRAIQS 438

Query: 389  GRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPESWG 447
            G    +   ++  RAG T    RL+++  +     +   + F   R  S  R L P  WG
Sbjct: 439  GNWTVKR-FNMN-RAGITHVLSRLSYIAALGMMTRI--SSQFEKTRKVSGPRALQPSQWG 494

Query: 448  FLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPK 507
             LC   TP+GE CGL+ ++     + +      N+ +   ++  I      VG I     
Sbjct: 495  MLCTSDTPEGEACGLVKNLALMTHITT------NVPE-EPVKKMIFAADESVGPIREYTG 547

Query: 508  LVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGG 567
                   + + + L+G    V  + E ++  A  R L+     V P      +V + +  
Sbjct: 548  TEMHSKGSYI-IHLNGTPFAV--TREPKRFAARFRTLR-RRGWVSP------FVSIHINE 597

Query: 568  AYPGLYLFTSPPKFVRP---VRNIS--LPSEESQNIELIGPFEQVFMEIRCPDGGDGGRR 622
             +  +++ T   +  RP   V+N    L +E  + ++L       F+     +  D    
Sbjct: 598  HFSAVHIATDEGRICRPYIIVKNGKSMLKAEHLKMLQLGQATFDTFLTSGVVEYLDVNEE 657

Query: 623  N-----------AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSV 671
            N               TH EI P  +L  VA L P+  HNQSPRN YQC M KQ +G   
Sbjct: 658  NDTLVALQEDQITNSTTHMEIEPFTILGAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIA 717

Query: 672  QALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILN 731
                 R D  LY L  PQ P+V T T      D+ P G NA V V++Y+GYD+EDA++LN
Sbjct: 718  YNQFNRIDTLLYTLVYPQRPMVITKTIQLIHYDKLPAGQNATVVVMSYSGYDIEDALVLN 777

Query: 732  KSSVDRGMCHGQIYQTETIDLSDDGN-KVDRGQKLFRRNKDAKSL-HSVIDSDGLPYVGQ 789
            K+S+DRG    Q+++  T +L    N + DR   + +   D   + H+++D+DGL  VG 
Sbjct: 778  KASLDRGFGRCQVFRKYTAELQGYTNGRRDRVGGIMKDEDDKPIVKHAILDADGLAQVGS 837

Query: 790  MIHPGE-------PYCSIY-----DKTTNSWR---TNSRKGSESVFVDYVAVDMKNSKNL 834
             +  G+       P   I      D+ ++ +R   TN R  S+   +D V + +   +N 
Sbjct: 838  KVESGQTMIKKETPLDQISTGIAGDRGSDDYRDASTNYRI-SDPAIIDKVMISVNEREN- 895

Query: 835  PQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPS 894
             +   ++ R TR P +GDKFSSRHGQKGV   +  + DMPFS   G+RPD+I+NPH FPS
Sbjct: 896  -KLIKVQTRQTRRPELGDKFSSRHGQKGVVGIIVNEEDMPFSD-KGLRPDIIMNPHGFPS 953

Query: 895  RMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGF 954
            RMT+  L E +  K   + G+      F ++ +              V+ +G+ L   GF
Sbjct: 954  RMTVGKLFECLTGKASVIAGE--KDYGFGDAFR-----------SHPVESMGQALIDHGF 1000

Query: 955  NYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKR 1014
            ++ G +   SG+ G  +   I+ GP++YQRL+HMV DK   RS G    +TRQP +GR R
Sbjct: 1001 SWEGKDYFTSGITGEPMEAYIYNGPIFYQRLKHMVQDKMHSRSRGPRAILTRQPTEGRSR 1060

Query: 1015 GGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIRE 1074
             GG+R GEMERD L+A+GA+ LL +RL   SD    DVC  CG      +          
Sbjct: 1061 DGGLRLGEMERDCLIAYGASQLLLERLMISSDGTELDVCQECGLFGYKGY---------- 1110

Query: 1075 IGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
                          C+AC++++ +  + MPY  + L  EL +MN+ + L+L D
Sbjct: 1111 --------------CNACKSTRNVTQMTMPYACKLLVQELISMNVGVKLKLED 1149


>gi|401423257|ref|XP_003876115.1| RNA polymerase I second largest subunit,putative [Leishmania mexicana
            MHOM/GT/2001/U1103]
 gi|322492356|emb|CBZ27630.1| RNA polymerase I second largest subunit,putative [Leishmania mexicana
            MHOM/GT/2001/U1103]
          Length = 1615

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 260/793 (32%), Positives = 406/793 (51%), Gaps = 99/793 (12%)

Query: 401  QRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPC 460
            Q +G+ V AE LNF RF    R VHRG + A +R++ VRK   E++GF+C V +PDGE C
Sbjct: 851  QTSGWVVMAEHLNFYRFFEQLRCVHRGKTIADMRSSEVRKYPCEAYGFICMVQSPDGEDC 910

Query: 461  GLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVL 520
            G+LNH++ +   ++  D+       +++R  + + + GV    +   +V      V  V 
Sbjct: 911  GVLNHLSLSTISSNSPDAAMT----AQLREIVRKAVPGVRSRATHSTVVDQLCETV-PVW 965

Query: 521  LDGRVVGVIPSSEIEKVVAHLRRLK-------VSAASVIP-------DDLEVGYV-PLSL 565
            ++G ++G +  ++  +    LR+LK       V    ++          LEV YV P + 
Sbjct: 966  MEGELLGYLSPADAAEAATTLRQLKALTLRSQVHVTGIVRRKDASPLQTLEVVYVAPKNK 1025

Query: 566  GGAYPGLYLFTSPPKFVRPVRNISLPSEESQN-----IELIGPFEQVFMEIRC--PDGGD 618
              A  GLY+F    + +RPV+ +     +        +  IG +EQ +++I     D  D
Sbjct: 1026 DPA--GLYVFYDCGRLMRPVQRLESSVRKDATHLPFPLMFIGTWEQSWLDIAAVPSDPLD 1083

Query: 619  GGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRA 678
               +      + E + T ++S+ +   P+ +HN SPRN++QC ++KQ+ G  +QAL +R 
Sbjct: 1084 AVMQLNRKYEYMEQNGTNLISLTSATIPFFEHNCSPRNLFQCGLSKQSSGTQLQALAWRK 1143

Query: 679  DQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRG 738
            + KL+    PQ  I RT     YG+D+   G NA++AVLAYTGYDM+DA+I+N ++  RG
Sbjct: 1144 EAKLFRTYCPQRYISRTLPMDYYGLDDVNLGVNAVIAVLAYTGYDMDDAVIINSTAAQRG 1203

Query: 739  MCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLP------------Y 786
            M    +   + +  S  G+  D            +   + ++++GLP            +
Sbjct: 1204 MLTAGVTVAKIVTASGKGSDKDDVFVFHNLLSTGERFTAELEANGLPPKRANASLDAFSF 1263

Query: 787  VGQMIHPG-----EPYC--------------SIYDKT---TNSWRTNSRKGSESVFVDYV 824
                 +PG     + YC              S+Y+ T      WR +  KG E  +V  V
Sbjct: 1264 DRDHKYPGLRDNNDVYCCAKRVERVDPFTNKSVYEYTRHHATKWR-HFDKG-EDAWVQQV 1321

Query: 825  AVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPD 884
             + +  S   P    + FR  R P +GDKFSSRHGQKG         D+PF+  +G+ PD
Sbjct: 1322 -IPLVYSGPDPTSVLMIFRIPRPPTVGDKFSSRHGQKGTLPLHIRSHDLPFATASGITPD 1380

Query: 885  LIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDE 944
            +IINPHAFPSRMT+ M+LE + AK G++ G+F+D + ++            DE   + + 
Sbjct: 1381 VIINPHAFPSRMTVGMVLEIMTAKVGAIEGRFIDHSAWST----------VDEQPRVAEL 1430

Query: 945  LGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRS---TGTM 1001
            +GE L   G+N +G E L  G+ G E+  ++F+G   YQRLRHMVSDK+Q R+     T 
Sbjct: 1431 IGEALVKAGYNRYGREHLIDGISGEEMKADVFMGICGYQRLRHMVSDKWQARARTDAHTY 1490

Query: 1002 DQITR--QPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSV 1059
              +T+  QP+KGRKR GG+R GEMERD LL+HG + ++ DRL   SD   A +C  CGS+
Sbjct: 1491 RAVTKTGQPVKGRKRHGGVRVGEMERDGLLSHGISEVVVDRLLHVSDKTKAFICPRCGSL 1550

Query: 1060 LTATFIHPQKRAIREIGGLPPARAPKKVTCHAC-----QTSKGMETVAMPYVFRYLAAEL 1114
            L+       +R   E G           TC  C     +++  +  V +P V R  AAEL
Sbjct: 1551 LSL-----YERHATEYGTWR--------TCRFCGAGADESTDSIAMVEIPQVLRLWAAEL 1597

Query: 1115 AAMNIKITLQLGD 1127
             ++ I++ L+  +
Sbjct: 1598 TSIGIRVVLKTSE 1610



 Score = 80.5 bits (197), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 74/132 (56%), Gaps = 6/132 (4%)

Query: 66  RERF--NFGQFPVMLKTRRCHLQGADSQKLVSLK--EEAAEMGGYFILNGLERVFRSVIL 121
           +E+F  NF  FP M+K  RC L+  D+ +L   +  EE  E+GGYFI+NG ER+ R++++
Sbjct: 463 KEQFWVNFASFPEMVKGARCALRNVDA-RLDHFRALEEQKEVGGYFIMNGGERILRALLM 521

Query: 122 PKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKE 181
            + N P+++ R  F  +   ++ KAVVIRC R    +     YY   G V   F  +   
Sbjct: 522 QRCNVPINIYREKFVTQGPHFSAKAVVIRCKRPSGLTAQNYFYYTTQGEVIFSF-ARKVV 580

Query: 182 YLLPVGIVLKAL 193
           + LP  ++L A+
Sbjct: 581 WHLPAPLLLSAM 592


>gi|126460694|ref|YP_001056972.1| DNA-directed RNA polymerase subunit B [Pyrobaculum calidifontis JCM
            11548]
 gi|126250415|gb|ABO09506.1| DNA-directed RNA polymerase, subunit B' / DNA-directed RNA
            polymerase, subunit B' [Pyrobaculum calidifontis JCM
            11548]
          Length = 1127

 Score =  385 bits (988), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 338/1124 (30%), Positives = 521/1124 (46%), Gaps = 169/1124 (15%)

Query: 57   YLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVF 116
            Y+D   P V E F  G+ P+M+K++RC+L      +     E+  + GGYFI+NG ER  
Sbjct: 117  YVD-DEPYVTETFYIGELPIMVKSKRCNLTRLKPSEYAKKFEDPQDFGGYFIINGSER-- 173

Query: 117  RSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLK--LYYLLNGSVRLG 174
              VI+ +++  +   R  +        DK  V    +   + +  +  L   LN    + 
Sbjct: 174  --VIISQED--LVTDRPIY-----DVGDKPSVKFLAKTISTGIGYRSTLTVELNKDGVIY 224

Query: 175  FWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILA 234
              L      +P  I +KAL    D ++   ++   D   +KE   + S + + +V I   
Sbjct: 225  VTLSAMPVKIPFPIYMKALGLETDEDVVKAVSD--DPDIQKE--LLPSLIAANQVAI--- 277

Query: 235  EVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNN------- 287
                    TR   L +IG     V  G         A  ++  Y   HL           
Sbjct: 278  --------TREDALDYIGGK---VAVGQPRPVRIERALQLLDRYFLPHLGTTTPDEKKQQ 326

Query: 288  ----DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKG 343
                 K  +L  +++ L  L       D+ D + N+ + L G L+T   +   + +L++ 
Sbjct: 327  EIRLKKALMLGQIVKGLVELQLGRRKPDDKDHVGNKRVRLVGDLMTQLFRTVFKQFLQE- 385

Query: 344  KKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRA 403
               ++ ++E       ++    I       P  Q     + + +  R A  TG  +  + 
Sbjct: 386  ---LRSQLEK------YYARGRI-------PHIQTIVRPDIITERVRQALATGNWVGGKT 429

Query: 404  GYTVQAERLNFLRFISFFRAVHRGASFAGLRTT---SVRKLLPESWGFLCPVHTPDGEPC 460
            G +   +R N+L  +S+ R V    S    RT      R L P  WG LC V TP+G+  
Sbjct: 430  GVSQILDRTNYLSTLSYLRRVVSSLS----RTQPHFEARDLHPTQWGRLCAVETPEGQNV 485

Query: 461  GLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVL 520
            GL+ ++     + +  D R            + ++L  +G +P L K  + G      V 
Sbjct: 486  GLVKNLALLAEITTGVDER-----------EVEQLLYNLGTVPVL-KAREDGIRGA-EVY 532

Query: 521  LDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL-----GGAY--PGLY 573
            L+GR++G+ P++E  ++VA +R L+      I D++ + ++  S+     GG    P L 
Sbjct: 533  LNGRLIGIHPNAE--ELVATVRSLRRQGK--ISDEINIAHINGSVLVNCDGGRIRRPLLV 588

Query: 574  LFTSPPKF----VRPVRNISLPSEESQN---IELIGPFEQVFMEIRCPDGGDGGRRNAFP 626
            +     K     V  VR   L  ++      +E +   E+    I     GD        
Sbjct: 589  VENGRLKLTKDIVERVRKGDLTWDDLVKMGVVEYLDADEEENAHIAVDPRGD-----LSG 643

Query: 627  ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQ 686
             TH EI P+ +L  +A++ PY +HNQSPRN Y+  MAKQ++G       ++ D + + L 
Sbjct: 644  YTHVEIIPSAILGAIASIIPYLEHNQSPRNQYEAAMAKQSLGLPQSNFLYKLDSRGHMLY 703

Query: 687  TPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQ 746
             P+ PIV T      G  + P G NA+VA+L YTGY++EDA+ILNK+SV+RGM     Y+
Sbjct: 704  YPERPIVTTRGLELVGYSKRPAGQNAVVALLTYTGYNIEDAVILNKASVERGMFRSVFYR 763

Query: 747  T-ETIDLSDDGNKVDRGQ------KLFRRNKDAKSLHSVIDSDGLP----YVGQ---MIH 792
            T ET +    G + DR +      K +R        +S +D DG+     YV     +I 
Sbjct: 764  TYETEEQKYPGGEEDRIEVPDSSVKGYR----GPEAYSHLDEDGIAPPEVYVSSNEVLIG 819

Query: 793  PGEP---YCSIYDKTTNSWRTNS----RKGSESVFVDYVAVDMKNSKNLPQKANIRFRHT 845
               P   Y ++  +     R ++    R+G + + VD V +      N  +   +R R  
Sbjct: 820  KTSPPRFYTTLETERILKERRDASVAVRRGEKGI-VDRVIITESPEGN--KLVKVRLREL 876

Query: 846  RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
            R P +GDKF+SRHGQKGV   L    DMPF+   G+ PD+I+NPHA PSRMT+  LLES+
Sbjct: 877  RIPELGDKFASRHGQKGVVGMLLRQEDMPFTE-DGIVPDIIVNPHALPSRMTVGQLLESI 935

Query: 906  AAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSG 965
            A K G+  G+ +DATPF           G  E     ++L ++L   GF + G EV+YSG
Sbjct: 936  AGKVGAATGQLVDATPFE----------GVGE-----EDLRKLLLKLGFRWDGKEVMYSG 980

Query: 966  VYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMER 1025
            + G +L  +IFIG VYYQ+L HMV+DK   R+ G +  +TRQP +GR R GG+R GEMER
Sbjct: 981  ITGEKLVADIFIGIVYYQKLHHMVADKIHARARGPVQILTRQPTEGRSREGGLRLGEMER 1040

Query: 1026 DSLLAHGAAYLLHDRLHTCSDYHVADVCSLCG--SVLTATFIHPQKRAIREIGGLPPARA 1083
            D L+AHGA+ LL++RL   SD +V  VC LCG  + L A    P+               
Sbjct: 1041 DVLIAHGASALLYERLVESSDKYVMYVCELCGLPAYLDAKTNKPR--------------- 1085

Query: 1084 PKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
                 C     +     V +PY F+ L  EL A+ I   L+L +
Sbjct: 1086 -----CPIHGDTGQFAKVVVPYAFKLLLQELMALGIYPKLELSE 1124


>gi|330946830|ref|XP_003306806.1| hypothetical protein PTT_20049 [Pyrenophora teres f. teres 0-1]
 gi|311315505|gb|EFQ85085.1| hypothetical protein PTT_20049 [Pyrenophora teres f. teres 0-1]
          Length = 484

 Score =  385 bits (988), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 215/495 (43%), Positives = 293/495 (59%), Gaps = 49/495 (9%)

Query: 667  MGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMED 726
            MG    +L +R D K Y LQT QTPI R   Y KYG+D +P G NA+VAV++YTGYDM+D
Sbjct: 1    MGTPATSLDYRTDNKAYRLQTGQTPIARPPLYNKYGLDNFPNGMNAVVAVISYTGYDMDD 60

Query: 727  AMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQ----KLFRRNKDA---KSLHSVI 779
              +L++ + +RG  HG +Y+T+  DL ++G++ +R +    KLF    ++         +
Sbjct: 61   GFVLSRGAHERGFGHGTVYKTKICDL-EEGSRKNRSKRTVTKLFGFAPNSLVEAKPKETL 119

Query: 780  DSDGLPYVGQMIHPGEPYCSI----YDKTTNSWRTNS-------RKGSESVFVDYVAVDM 828
            D+DGLP VG M+  G+   +     YD   + +            K  E  F+D V +  
Sbjct: 120  DADGLPRVGMMLRSGDVIAAWHTVSYDTAMDDYTNKDGQTQFFKYKEDEVAFIDQVRLIG 179

Query: 829  KNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLII 887
                  P QK +I+ R  R+PI+GDKFSSRHGQKGV SQ +   DMPFS  TG++PD+II
Sbjct: 180  SEDGTQPCQKLSIKLRIPRSPIVGDKFSSRHGQKGVVSQKFSVADMPFS-ETGIQPDVII 238

Query: 888  NPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGE 947
            NPHAFPSRMTI M +ES+A K G+LHG   D+TPF             DE  + VD  G+
Sbjct: 239  NPHAFPSRMTIGMFIESLAGKSGALHGMAQDSTPFQ-----------FDEQNTAVDHFGQ 287

Query: 948  MLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQ 1007
             L   G+NY+G E +YSG  G EL  +I+IG VYYQRLRHM++DKFQVR+TG ++  T Q
Sbjct: 288  QLMKAGYNYYGNEPMYSGFTGEELHADIYIGVVYYQRLRHMINDKFQVRTTGPVNPTTGQ 347

Query: 1008 PIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHP 1067
            P+KGRK+GGGIR GEMERD+L+AHG A+LL DR+  CSDY  A +C  CGS L+ T    
Sbjct: 348  PVKGRKKGGGIRVGEMERDALIAHGTAFLLQDRMMNCSDYTKAAICRSCGSFLSMTPTVS 407

Query: 1068 QKRAIREIGGLP-------PARAPKKVTCHA--CQTSKGME--------TVAMPYVFRYL 1110
            +    ++ GG          A+    VT  A     ++GM          VA+P V +YL
Sbjct: 408  EYSRKKDKGGKDITIRCRRCAKLADAVTSKADVWMDAQGMRYVGGDDVAVVAVPGVLKYL 467

Query: 1111 AAELAAMNIKITLQL 1125
              EL++M I++   +
Sbjct: 468  DVELSSMGIRMKFNV 482


>gi|322784943|gb|EFZ11714.1| hypothetical protein SINV_06174 [Solenopsis invicta]
          Length = 1123

 Score =  384 bits (987), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 334/1149 (29%), Positives = 511/1149 (44%), Gaps = 166/1149 (14%)

Query: 37   HCRQAKISYTGKLMADVEFQYLD------AGSPVVRERFNFGQFPVMLKTRRCHLQGADS 90
             CR   ++Y+  +  ++E+   +       G     ++   G  P+ML++  C L     
Sbjct: 80   ECRLRDLNYSAPIEVEIEYVRNNPDNKEGGGKQRTWKKVVIGMMPIMLRSSNCVLTKKSE 139

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
             +L  L E   + GGYFI+NG E+V   +++ +Q     MVR+  R   E      VV  
Sbjct: 140  SQLAKLNECPHDPGGYFIINGQEKV---ILIQEQ-----MVRN--RIVLEVDNKDCVVAA 189

Query: 151  CV-----RKDQSSVTLK--LYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFN 203
            C      +K +++V  K   YYL +   +             + I+ KA+   +DLEI  
Sbjct: 190  CNSFTHDKKTKTNVVGKSGKYYLRHNMFQDDIL---------ITIIFKAMGIVSDLEIMQ 240

Query: 204  HLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQ--DLSLTTRLQCLQHIGE-----HFQ 256
             +     +KY  +  A             L E Q  DL++ ++ Q L+++        F 
Sbjct: 241  MVGT--QDKYLDKFAAS------------LEECQREDLNIFSQNQALKYLNSKRKQTRFH 286

Query: 257  PVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
                 +  E   A+A  ++     +  N    K   L  M++++ +     S+ D+ D  
Sbjct: 287  VPKSRVADEMKDAIATNILSHVPVIDFN-FRPKALYLALMIRRVINAQSDRSLIDDKDYY 345

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIEN-NGKKFDFFNLANIKKVMEKNPS 375
             N+ + L G L+ +  ++  + +  + K++    I       FD      I K M  +  
Sbjct: 346  GNKRLELAGSLLALMFEDLFKRFNWELKQIADKNIPKIKAAAFD------IAKHMRHD-- 397

Query: 376  KQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
              I   +   + +G    +      +R G T    RL+++  +     VH  + F   R 
Sbjct: 398  -LITNGLAFAISSGNWTIKRFR--MERHGVTQVLSRLSYISALGMMTRVH--SQFEKTRK 452

Query: 436  TS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILR 494
             S  R L    WG LCP  TP+GE CGL+ ++     + +    +  I     +    + 
Sbjct: 453  VSGPRSLQGSQWGMLCPNDTPEGEACGLVKNLALMAHITTEVPEKPLIDLMRNLGVEDIY 512

Query: 495  VLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKV-----SAA 549
             L G        +L K G   V +V ++G + G++ + +  ++V   R L+      S  
Sbjct: 513  TLAG-------EELTKEG---VYTVFVNGIMAGIVQNHK--RLVKQFRLLRRAGYINSFV 560

Query: 550  SVIPDDLEVGYVPLSLGGAYPGLYLFTS------PPKFVRPV-RNISLPSEESQN--IEL 600
            S+            S GG      +          PK ++ + RNI+   +   +  IE 
Sbjct: 561  SIYTQHRHKCIQVSSDGGRLCRPCIIVKHGKSLVKPKHIKDLERNITTFEDFLYDGLIEY 620

Query: 601  IGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQC 660
            +   E+    I C +            TH EI    +L V A L PY  HNQSPRN YQC
Sbjct: 621  LDVNEENDSLIACTESEINE-----DTTHLEIAEFAILGVCAGLIPYPHHNQSPRNTYQC 675

Query: 661  QMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYT 720
             M KQ +G   +  + R D  +Y+L   Q PIV+T        D+ P G NAIVAV++Y+
Sbjct: 676  AMGKQAIGSIGENQRTRIDTVMYNLAYSQRPIVKTRAIELINYDKLPAGENAIVAVMSYS 735

Query: 721  GYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR--GQKLFRRNKDAKSLHS 777
            GYD+EDA+I NK+S+DRG     +Y+     L    N+  DR  G  +    K   S H 
Sbjct: 736  GYDIEDALIFNKASIDRGYGRCLVYRNAKCTLKKYANQTQDRIMGPSIDANTKKPLSKHE 795

Query: 778  VIDSDGLPYVGQMIH------------PGE---PYCSIYDKTTNSWRTNS--RKGSESVF 820
            ++DSDG+   G+++             P E   P  S   +T   +R      KG    +
Sbjct: 796  ILDSDGIAAPGELVENKTVMVNKSVPAPSENIGPVRSGNVQTQTEYRNAEIQYKGLVPAY 855

Query: 821  VDYVAVDMKNSKNLPQKANIR--FRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGV 878
            V+ V +    SKN      ++   R TR P IGDKFSSRHGQKGV   +    DMPF+  
Sbjct: 856  VEKVMI----SKNAEDAFLVKLLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNDY 911

Query: 879  TGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDES 938
             GM PD+I+NPH FPSRMT+  L+E +A K G ++GKF DAT F  +             
Sbjct: 912  -GMCPDIIMNPHGFPSRMTVGKLIEVLAGKAGVVNGKFQDATAFGGAK------------ 958

Query: 939  KSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRST 998
               V++L E L   G+NY G +  Y+G+ G  L   I+ GPVYYQ+L+HMV DK   R+ 
Sbjct: 959  ---VEDLCEELAKNGYNYLGKDFFYNGMTGRPLIGYIYSGPVYYQKLKHMVQDKIHARAR 1015

Query: 999  GTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGS 1058
            G    +TRQP +GR R GG+R GEMERD L+ +GA+ LL +RL   SD    DVC+ CG 
Sbjct: 1016 GPRVVLTRQPTEGRAREGGLRLGEMERDCLIGYGASMLLIERLMISSDAFKVDVCNKCGL 1075

Query: 1059 VLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMN 1118
            +    +                        C  CQ+S  + T+ MPY  + L  EL +MN
Sbjct: 1076 IGYNNW------------------------CQRCQSSSSVSTITMPYACKLLFQELQSMN 1111

Query: 1119 IKITLQLGD 1127
            +   L L +
Sbjct: 1112 VVPRLSLKE 1120


>gi|324500827|gb|ADY40377.1| DNA-directed RNA polymerase II subunit RPB2 [Ascaris suum]
          Length = 1173

 Score =  384 bits (986), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 323/1147 (28%), Positives = 516/1147 (44%), Gaps = 153/1147 (13%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN---FGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+       G      ++     G+ P+ML++  C L     
Sbjct: 112  MPNEARLRNLTYSSPLYVDITKTVSRDGEDPKESKYEKVFVGKIPIMLRSSYCMLSNMSD 171

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  Y  +    R
Sbjct: 172  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKYAYKTEC---R 225

Query: 151  CVRKDQSSVTLKLYYLL---NGSV-------RLGFWLQGKEYLLPVGIVLKALVDTNDLE 200
               ++ S  T  L+  +    GS        R+   L   +  +P+ IV +AL   +D +
Sbjct: 226  SCLENSSRPTSTLWVNMMARGGSTKKSAMGQRIIAILPYIKQEIPIMIVFRALGFVSDHD 285

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEH-FQPVI 259
            I  H+   +++           P + E VK  L E     +  +   L  IG    +P  
Sbjct: 286  ILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGARGAKP-- 330

Query: 260  DGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
             G+  E     A+ +++  +  H+  ++     K   + +M+ +L          D+ D 
Sbjct: 331  -GVTKEQRIKYAKEILQKEMLPHVGISDFCETKKAYFIGYMVHRLLLAALGRRELDDRDH 389

Query: 316  LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPS 375
            + N+ + L G L+    +   ++ L++ +   Q  I  NG   DF   A +K       +
Sbjct: 390  IGNKRLDLAGPLLAFLFRALFKNLLKEVRLTAQKYINKNG---DFILDACVK-------T 439

Query: 376  KQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
              I   +   L TG    Q     Q RAG +    RL +   +S  R  +      G + 
Sbjct: 440  STITRGLAYSLATGNWGDQKKAH-QSRAGVSQVLNRLTYTATLSHLRRCNSPIGREG-KL 497

Query: 436  TSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV 495
               R+L    WG +CP  TP+G+  GL+ ++         Y S G++ +       IL  
Sbjct: 498  AKPRQLHNTQWGMVCPAETPEGQAVGLVKNLALMA-----YISVGSLPE------PILEF 546

Query: 496  LIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAA 549
            L    M  +L ++  S       + ++G  VG+    + E++++ L++L+      VS  
Sbjct: 547  LEEWSM-ENLEEVAPSAIADATKIFVNGAWVGI--HRDPEQLMSTLKKLRREMDIIVSEV 603

Query: 550  SVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN-----------I 598
            S++ D  +      +  G      L     K V   ++I    + + N           +
Sbjct: 604  SMVRDIRDREIRIYTDAGRVCRPLLIVENQKLVLKKKHIDQLKDTNDNYAWSDLVAGGVV 663

Query: 599  ELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656
            ELI   E+  V + +   D   GG  + +  TH EIHP  +L V A++ P+ DHNQSPRN
Sbjct: 664  ELIDAMEEETVMLAMMPEDLKAGGYCDTY--THCEIHPAMILGVCASIIPFPDHNQSPRN 721

Query: 657  MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
             YQ  M KQ MG        R D   + L  PQ P+V T +      +E P G NAIVA+
Sbjct: 722  TYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFNELPAGINAIVAI 781

Query: 717  LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAK--- 773
            L+YTGY+ ED++I+N+S +DRG+     Y++       + N  +  ++L  +    K   
Sbjct: 782  LSYTGYNQEDSVIMNQSGIDRGLFRSVFYRSYR---DQEANLDNANEELIEKPTRDKCSG 838

Query: 774  ---SLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTT------NSWRTNSRK---------- 814
               SL+  +D DG+   G  +   +    I  KT       +    N++K          
Sbjct: 839  MRHSLYDKLDEDGIISPGMRVSGDD---VIIGKTISLPDVEDDLEANTKKYTKRDASTFL 895

Query: 815  -GSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDM 873
              SE+  VD V + +    N  +   IR R  R P IGDKF+SRHGQKG    ++   DM
Sbjct: 896  RSSETGIVDQVMLTLNTDGN--KFVKIRVRSVRLPQIGDKFASRHGQKGTMGIMYRQEDM 953

Query: 874  PFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDT 933
            PF+   G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF ++V       
Sbjct: 954  PFTN-EGITPDIIINPHAVPSRMTIGHLIECLQGKLSANKGEIGDATPFNDTVN------ 1006

Query: 934  GTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKF 993
                    V ++  +L   G++  G E++Y+G  G +LT ++F+GP YYQRL+HMV DK 
Sbjct: 1007 --------VQKISNLLSEYGYHLRGNEIMYNGHTGHKLTTQVFLGPTYYQRLKHMVDDKI 1058

Query: 994  QVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSD-YHVADV 1052
              R+ G +  + RQP++GR R GG+RFGEMERD  ++HGAA  L +RL   SD YHV  V
Sbjct: 1059 HSRARGPVQMMNRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYHVY-V 1117

Query: 1053 CSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAA 1112
            C+ CG ++ A                          C AC+    +  + +PY  + L  
Sbjct: 1118 CNNCGLIVIANL------------------RTNTFECKACRNKTQVSAIRIPYACKLLFQ 1159

Query: 1113 ELAAMNI 1119
            EL +M+I
Sbjct: 1160 ELMSMSI 1166


>gi|383851705|ref|XP_003701372.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
            [Megachile rotundata]
          Length = 1175

 Score =  384 bits (986), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 325/1143 (28%), Positives = 511/1143 (44%), Gaps = 140/1143 (12%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   +    ++   G+ P+ML+++ C L G   
Sbjct: 109  MPNEARLRNLTYSAPLYVDITKTIVKDGEDPIETQHQKTFIGKIPIMLRSKYCLLAGLSD 168

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  Y  K+ +  
Sbjct: 169  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKYAY--KSEIRS 223

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  +      +     G+  +         +P+ IV +AL    D +
Sbjct: 224  CLEHSSRPTSTLWINMMAKSGASIKKSAIGQRIIAIIPYIKQEIPIMIVFRALGFVADRD 283

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEH-FQPVI 259
            I  H+   +D+           P + E VK  L E     +  +   L  IG    +P  
Sbjct: 284  ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGTRGARP-- 328

Query: 260  DGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
             G+  E     A  +++  +  H+  ++     K   L +M+ +L S        D+ D 
Sbjct: 329  -GVTKEKRIKYAREILQKEMLPHVGISDFCETKKAYFLGYMVHRLLSASLGRRELDDRDH 387

Query: 316  LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPS 375
              N+ + L G L+    +   ++ L K  +L   +  + GK F+   LA IK       +
Sbjct: 388  YGNKRLDLAGPLLAFLFRGLFKN-LMKEVRLYAQKFIDRGKDFNL-ELA-IK-------T 437

Query: 376  KQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
            K I   +   L TG    Q     Q RAG +    RL F   +S  R V+      G + 
Sbjct: 438  KIITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KL 495

Query: 436  TSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV 495
               R+L    WG LCP  TP+G   GL+ ++     ++                + IL  
Sbjct: 496  AKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEF 544

Query: 496  LIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAA 549
            L    M  +L ++  S       + ++G  VG+    + ++++A LR+L+      VS  
Sbjct: 545  LEEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPDQLMATLRKLRRQMDIIVSEV 601

Query: 550  SVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN----IELIGP-- 603
            S+I D  +      +  G      L       +   R+I +  E   N     EL+G   
Sbjct: 602  SMIRDIRDREIRIYTDAGRISRPLLIVEGQNLLLKKRHIDMLKERDYNNDGWQELVGSGV 661

Query: 604  -------FEQVFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQSP 654
                    E+  M    P+     +  A+  T  H EIHP  +L V A++ P+ DHNQSP
Sbjct: 662  VEYIDTLEEETVMIAMSPEDLRQEKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSP 721

Query: 655  RNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIV 714
            RN YQ  M KQ MG  +     R D   + L  P  P+V T +       E P G N+IV
Sbjct: 722  RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIV 781

Query: 715  AVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD-GNKVDRGQKLFRRNKDA- 772
            A+L YTGY+ ED++ILN S+V+RG      Y++     S   G++ ++ +K  R+     
Sbjct: 782  AILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKRIGDQEEQFEKPTRQTCQGM 841

Query: 773  -KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSR----KGS 816
              +++  +D DG+             +G+ I   E    + D TT  +         + S
Sbjct: 842  RNAIYDKLDDDGIIAPGIRVSGDDVVIGKTITLPEADDEL-DSTTKRFTKRDASTFLRNS 900

Query: 817  ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS 876
            E+  VD V + + NS+   +   IR R  R P IGDKF+SRHGQKG C   +   DMPFS
Sbjct: 901  ETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFS 958

Query: 877  GVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTD 936
               G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF ++V          
Sbjct: 959  -CEGLTPDIIINPHAIPSRMTIGHLIECIQGKVSANKGEIGDATPFNDAVN--------- 1008

Query: 937  ESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVR 996
                 V ++  +L+  G+   G EV+Y+G  G ++  ++F+GP YYQRL+HMV DK   R
Sbjct: 1009 -----VQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSR 1063

Query: 997  STGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLC 1056
            + G +  + RQP++GR R GG+RFGEMERD  ++HGAA  L +RL   SD +   +C+ C
Sbjct: 1064 ARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHICNFC 1123

Query: 1057 GSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAA 1116
            G +  A   +                      C  C+    +  V +PY  + L  EL A
Sbjct: 1124 GLIAIANLRN------------------NTFECKGCKNKTQISQVRLPYAAKLLFQELMA 1165

Query: 1117 MNI 1119
            MNI
Sbjct: 1166 MNI 1168


>gi|324120644|dbj|BAJ78713.1| RNA polymerase II second largest subunit [Thrips palmi]
          Length = 1150

 Score =  384 bits (986), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 322/1141 (28%), Positives = 512/1141 (44%), Gaps = 136/1141 (11%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   +    ++   G+ P+ML++  C L G   
Sbjct: 84   MPNEARLRNLTYSAPLYVDITKTIVKEGEEPIETQHQKTFIGKIPIMLRSTYCLLNGLTD 143

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  Y  K  +  
Sbjct: 144  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKFAY--KCEIRS 198

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  +  G   +     G+  +         +P+ IV +AL    D +
Sbjct: 199  CLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 258

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +D+           P + E VK  L E     +  +   L  IG   +    
Sbjct: 259  ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RGARP 303

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     A+ +++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 304  GVTKEKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 363

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   ++ +++ +   Q  I+  GK F+   LA IK       +K
Sbjct: 364  GNKRLDLAGPLLAFLFRALFKNLMKEVRMYAQKFIDR-GKDFNL-ELA-IK-------TK 413

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   +   L TG    Q    L  RAG +    RL F   +S  R V+      G +  
Sbjct: 414  IITDGLRYSLATGNWGDQKKAHLA-RAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 471

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G   GL+ ++     ++                + IL  L
Sbjct: 472  KPRQLHNTLWGMVCPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 520

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  S       + ++G  VG+    + E+++A LR+L+      VS  S
Sbjct: 521  EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVSEVS 577

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
            +I D  +      +  G      L     + +   RNI    E   N            +
Sbjct: 578  MIRDIRDREIRIYTDAGRICRPLLIVENGQLLLKKRNIDQLKERDYNNYGWQMLVASGVV 637

Query: 599  ELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQSPR 655
            E I   E+   M    PD     +  A+  T  H EIHP  +L V A++ P+ DHNQSPR
Sbjct: 638  EYIDTLEEETVMIAMSPDDLRQDKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPR 697

Query: 656  NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
            N YQ  M KQ MG  +     R D   + L  P  P+V T +       E P G N+IVA
Sbjct: 698  NTYQSAMGKQAMGVYITNYHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVA 757

Query: 716  VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVDRGQKLFRRNKDA-- 772
            +L YTGY+ ED++ILN ++V+RG      Y++ +  +    G++ ++ +K  R N     
Sbjct: 758  ILCYTGYNQEDSVILNATAVERGFFRSVFYRSYKDAESKRIGDQEEQFEKPNRNNCQGMR 817

Query: 773  KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSR---KGSES 818
             +++  +D DG+             +G+ I   E    +   T    + ++    + SE+
Sbjct: 818  NAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPETDDDLDGTTRRHTKRDASTFLRNSET 877

Query: 819  VFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGV 878
              VD V + + NS+   +   IR R  R P IGDKF+SRHGQKG C   +   DMPF+  
Sbjct: 878  GIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGVQYRQEDMPFT-C 934

Query: 879  TGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDES 938
             G+ PD+IINPHA PSRMTI  L+E +  K  S  G+  DATPF ++V            
Sbjct: 935  EGLTPDIIINPHAIPSRMTIGHLIECLQGKVSSNKGEIGDATPFNDAVN----------- 983

Query: 939  KSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRST 998
               V ++ ++L+  G++  G EV+Y+G  G ++  ++F+GP YYQRL+HMV DK   R+ 
Sbjct: 984  ---VQKISQLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRAR 1040

Query: 999  GTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGS 1058
            G +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +RL   SD +   VC+ CG 
Sbjct: 1041 GPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGL 1100

Query: 1059 VLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMN 1118
            +  A   +                      C  C+    +  V +PY  + L  EL +MN
Sbjct: 1101 IAIANLRN------------------NTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 1142

Query: 1119 I 1119
            I
Sbjct: 1143 I 1143


>gi|380024797|ref|XP_003696177.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB2-like [Apis florea]
          Length = 1175

 Score =  384 bits (986), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 324/1143 (28%), Positives = 511/1143 (44%), Gaps = 140/1143 (12%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   +    ++   G+ P+ML+++ C L G   
Sbjct: 109  MPNEARLXNLTYSAPLYVDITKTIVKDGEDPIETQHQKTFIGKIPIMLRSKYCLLAGLSD 168

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  Y  K+ +  
Sbjct: 169  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKYAY--KSEIRS 223

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  +      +     G+  +         +P+ IV +AL    D +
Sbjct: 224  CLEHSSRPTSTLWINMMAKSGASIKKSAIGQRIIAIIPYIKQEIPIMIVFRALGFVADRD 283

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEH-FQPVI 259
            I  H+   +D+           P + E VK  L E     +  +   L  IG    +P  
Sbjct: 284  ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGTRGARP-- 328

Query: 260  DGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
             G+  E     A  +++  +  H+  ++     K   L +M+ +L S        D+ D 
Sbjct: 329  -GVTKEKRIKYAREILQKEMLPHVGISDFCETKKAYFLGYMVHRLLSASLGRRELDDRDH 387

Query: 316  LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPS 375
              N+ + L G L+    +   ++ L K  +L   +  + GK F+   LA IK       +
Sbjct: 388  YGNKRLDLAGPLLAFLFRGLFKN-LMKEVRLYAQKFIDRGKDFNL-ELA-IK-------T 437

Query: 376  KQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
            K I   +   L TG    Q     Q RAG +    RL F   +S  R V+      G + 
Sbjct: 438  KIITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KL 495

Query: 436  TSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV 495
               R+L    WG LCP  TP+G   GL+ ++     ++                + IL  
Sbjct: 496  AKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEF 544

Query: 496  LIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAA 549
            L    M  +L ++  S       + ++G  VG+    + ++++A LR+L+      VS  
Sbjct: 545  LEEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPDQLMATLRKLRRQMDIIVSEV 601

Query: 550  SVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN----IELIGP-- 603
            S+I D  +      +  G      L       +   R+I +  E   N     EL+G   
Sbjct: 602  SMIRDIRDREIRIYTDAGRISRPLLIVEGQNLLLKKRHIDMLKERDYNNDGWQELVGSGV 661

Query: 604  -------FEQVFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQSP 654
                    E+  M    P+     +  A+  T  H EIHP  +L V A++ P+ DHNQSP
Sbjct: 662  VEYIDTLEEETVMIAMSPEDLRQEKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSP 721

Query: 655  RNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIV 714
            RN YQ  M KQ MG  +     R D   + L  P  P+V T +       E P G N+IV
Sbjct: 722  RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIV 781

Query: 715  AVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD-GNKVDRGQKLFRRNKDA- 772
            A+L YTGY+ ED++ILN S+V+RG      Y++     S   G++ ++ +K  R+     
Sbjct: 782  AILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKRIGDQEEQFEKPTRQTCQGM 841

Query: 773  -KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSR----KGS 816
              +++  +D DG+             +G+ I   E    + D TT  +         + S
Sbjct: 842  RNAIYDKLDDDGIIAPGIRVSGDDVVIGKTITLPEADDEL-DSTTKRFTKRDASTFLRNS 900

Query: 817  ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS 876
            E+  VD V + + NS+   +   IR R  R P IGDKF+SRHGQKG C   +   DMPFS
Sbjct: 901  ETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFS 958

Query: 877  GVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTD 936
               G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF ++V          
Sbjct: 959  -CEGLTPDIIINPHAIPSRMTIGHLIECIQGKVSANKGEIGDATPFNDAVN--------- 1008

Query: 937  ESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVR 996
                 V ++  +L+  G+   G EV+Y+G  G ++  ++F+GP YYQRL+HMV DK   R
Sbjct: 1009 -----VQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSR 1063

Query: 997  STGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLC 1056
            + G +  + RQP++GR R GG+RFGEMERD  ++HGAA  L +RL   SD +   +C+ C
Sbjct: 1064 ARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHICNFC 1123

Query: 1057 GSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAA 1116
            G +  A   +                      C  C+    +  + +PY  + L  EL A
Sbjct: 1124 GLIAIANLRN------------------NTFECKGCKNKTQISQIRLPYAAKLLFQELMA 1165

Query: 1117 MNI 1119
            MNI
Sbjct: 1166 MNI 1168


>gi|19074634|ref|NP_586140.1| DNA-DIRECTED RNA POLYMERASE II SECOND LARGEST SUBUNIT
            [Encephalitozoon cuniculi GB-M1]
 gi|51702025|sp|Q8SR75.1|RPB2_ENCCU RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
            polymerase II subunit 2; Short=RNA polymerase II subunit
            B2
 gi|19069276|emb|CAD25744.1| DNA-DIRECTED RNA POLYMERASE II SECOND LARGEST SUBUNIT
            [Encephalitozoon cuniculi GB-M1]
          Length = 1141

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 324/1140 (28%), Positives = 513/1140 (45%), Gaps = 155/1140 (13%)

Query: 36   DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN---FGQFPVMLKTRRCHLQGADSQK 92
            +  R   ++Y   L  DV  + L     V + +++   FG  PVML++  C L G   + 
Sbjct: 93   NEARIRDLTYASPLFIDVTKETLSELGVVDKHKYSRVPFGSLPVMLRSSYCVLYGLGDKD 152

Query: 93   LVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCV 152
            L+ L E   + GGYFI+NG E+V    I+ ++    + V    + +   YT  A  IR V
Sbjct: 153  LIDLGECPYDQGGYFIVNGSEKV----IVAQERMASNTVYVFKKAQPATYTHYAE-IRSV 207

Query: 153  ----RKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
                 ++ S++++KL     G +R+   L  ++  +P+ ++ +AL   +D EI +H+   
Sbjct: 208  PEKSSRNPSTLSMKLCRS-PGVIRVSLPLVKQD--VPLFVLYRALGFLSDKEIIDHILYE 264

Query: 209  YDE------KYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGL 262
             DE      K   E+G V               VQD ++      L +IG+   P+  G 
Sbjct: 265  DDEEMFELLKESIEEGTV---------------VQDQNVA-----LDYIGKRSAPI--GT 302

Query: 263  QSESYYAVAETVIRDYIFVHLNDN----NDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQN 318
              E    +A+ ++   +  H+         K   + +++Q+L  +       D+ D    
Sbjct: 303  PQEKRIVMAKDLLAKEVLPHIGTQEFCETKKAYFIGYIVQRLLLVALGRRNPDDRDHYGK 362

Query: 319  QEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQI 378
            + + L G L+    +   +       + +Q  IEN  +    FN+A   K      +  I
Sbjct: 363  KRMDLSGPLLASLFRTLFKKLCVDTTRHMQKCIENGRE----FNIALGLK------ASII 412

Query: 379  GTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSV 438
                   L TG    Q    +Q RAG      R NF+  +S  R V+      G +  + 
Sbjct: 413  TQGFRYALATGNWGDQAKA-MQTRAGVAQVLNRYNFVSTLSHLRRVNTPIEKEG-KLAAP 470

Query: 439  RKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIG 498
            R+L    WG +CP  TP+G+ CGL+ +++    + S   S G + +F          L  
Sbjct: 471  RQLHNTHWGMVCPAETPEGQACGLVKNLSLMAYI-SVGSSSGPLVEF----------LEE 519

Query: 499  VGMIPSLPKLVKSGPPAVLSVLLDGRVVGV--IPSSEIEKVVAHLRRLKVSAASVIPDDL 556
             G + SL ++  S   A   + ++G  VG+   P   I+ +    R L++     I  D+
Sbjct: 520  CG-VESLEEISTSQLDAATKIFVNGVWVGIHSDPVGLIKSLKLLRRSLEMDKEVSIVRDI 578

Query: 557  EVGYVPLSLGGAYPGL-YLFTSPPKFV---RPVRNISLPSEESQNIELIGPFEQVFMEIR 612
                + +      P    L     K V     +R +     +  N+   G  E  F+++ 
Sbjct: 579  REKEIRVQSDAGRPCRPLLVVKDNKLVITAEDIRKLKRGEIKWDNLVTSGFIE--FLDVE 636

Query: 613  -------------CPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQ 659
                           D        +   TH EIHP  +L + A+  P+ DHNQSPRN YQ
Sbjct: 637  EEEMSMIAMNTKILADESRNSSDVSVSYTHCEIHPALILGICASTIPFPDHNQSPRNTYQ 696

Query: 660  CQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAY 719
              M KQ MG        R D     L  PQ P+V T +       E P+G NA+VA+  Y
Sbjct: 697  SAMGKQAMGIYATNFLLRMDTLSNILFYPQKPLVTTKSMEYLRFKELPSGQNALVAIACY 756

Query: 720  TGYDMEDAMILNKSSVDRGMCHGQIYQTETID-------LSDDGNKVDRGQKLFRRNKDA 772
            +GY+ ED++I+N+S++DRG+     Y+T T         ++++  K  RG  L  +N + 
Sbjct: 757  SGYNQEDSIIMNQSAIDRGLFRSFFYRTYTDQESMSRPGVNEEFCKPSRGAVLRMKNLN- 815

Query: 773  KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSR--KGSESV 819
               ++ +D DGL             +G++    +P  S  +     ++ +S   + +E+ 
Sbjct: 816  ---YNKLDDDGLISPGTRVTGDDVLIGKITPILDPERSTKEAPVYVYKDSSTAMRRTETG 872

Query: 820  FVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVT 879
             VD V V  K+       + ++ R  R P +GDKF+SRH QKG         DMPF+   
Sbjct: 873  IVDTVIVTNKDGYKF---SKVKVRSGRIPQMGDKFASRHAQKGTIGITLRQEDMPFTS-E 928

Query: 880  GMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESK 939
            G+ PD+IINPHA PSRMTI  L+E +  K  ++ G+  DATPF               S 
Sbjct: 929  GIVPDIIINPHAIPSRMTIGHLIECLLGKVSAMSGEEGDATPF---------------SG 973

Query: 940  SLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTG 999
              VD +   L++ GF   G+EV+Y+G+ G +L  ++F GP YYQRL+HMV DK   R+ G
Sbjct: 974  VTVDGISSRLKSYGFQQRGLEVMYNGMTGRKLRAQMFFGPTYYQRLKHMVDDKIHARARG 1033

Query: 1000 TMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSV 1059
             +  +TRQP++GR R GG+RFGEMERD +++HGA+  L +RL   SD +   VC  CG  
Sbjct: 1034 PLQILTRQPVEGRSRDGGLRFGEMERDCIISHGASAFLKERLMDVSDAYSCYVCDFCG-- 1091

Query: 1060 LTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
                        +  +GG       K   C  C  +  +  V +PY F+ L  EL  MNI
Sbjct: 1092 ------------LLAMGG------SKVNECKGCNNTTNVSMVEIPYAFKLLIQELMGMNI 1133


>gi|324120660|dbj|BAJ78721.1| RNA polymerase II second largest subunit [Vespa analis insularis]
          Length = 1175

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 326/1143 (28%), Positives = 510/1143 (44%), Gaps = 140/1143 (12%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+       G   +    ++   G+ P+ML+++ C L G   
Sbjct: 109  MPNEARLRNLTYSAPLYVDITKTIEKDGEDPIETQHQKTFIGKIPIMLRSKYCLLAGLSD 168

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  Y  KA +  
Sbjct: 169  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKYAY--KAEIRS 223

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  +      +     G+  +         +P+ IV +AL    D +
Sbjct: 224  CLEHSSRPTSTLWINMMAKSGASIKKSAIGQRIIAIIPYIKQEIPIMIVFRALGFVADRD 283

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEH-FQPVI 259
            I  H+   +D+           P + E VK  L E     +  +   L  IG    +P  
Sbjct: 284  ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGTRGARP-- 328

Query: 260  DGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
             G+  E     A  +++  +  H+  ++     K   L +M+ +L S        D+ D 
Sbjct: 329  -GVTKEKRIKYAREILQKEMLPHVGISDFCETKKAYFLGYMVHRLLSASLGRRELDDRDH 387

Query: 316  LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPS 375
              N+ + L G L+    +   ++ L K  +L   +  + GK F+   LA IK       +
Sbjct: 388  YGNKRLDLAGPLLAFLFRGLFKN-LMKEVRLYAQKFIDRGKDFNL-ELA-IK-------T 437

Query: 376  KQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
            K I   +   L TG    Q     Q RAG +    RL F   +S  R V+      G + 
Sbjct: 438  KIITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KL 495

Query: 436  TSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV 495
               R+L    WG LCP  TP+G   GL+ ++     ++                + IL  
Sbjct: 496  AKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEF 544

Query: 496  LIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAA 549
            L    M  +L ++  S       + ++G  VG+    + ++++A LR+L+      VS  
Sbjct: 545  LEEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPDQLMATLRKLRRQMDIIVSEV 601

Query: 550  SVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN----IELIGP-- 603
            S+I D  +      +  G      L       +   R+I +  E   N     EL+G   
Sbjct: 602  SMIRDIRDREIRIYTDAGRISRPLLIVEGQNLLLKKRHIDMLKERDYNNDGWQELVGSGV 661

Query: 604  -------FEQVFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQSP 654
                    E+  M    P+     +  A+  T  H EIHP  +L V A++ P+ DHNQSP
Sbjct: 662  VEYIDTLEEETVMIAMSPEDLRQEKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSP 721

Query: 655  RNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIV 714
            RN YQ  M KQ MG  +     R D   + L  P  P+V T +       E P G N+IV
Sbjct: 722  RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIV 781

Query: 715  AVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD-GNKVDRGQKLFRRNKDA- 772
            A+L YTGY+ ED++ILN S+V+RG      Y++     S   G++ ++ +K  R+     
Sbjct: 782  AILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKRIGDQEEQFEKPTRQTCQGM 841

Query: 773  -KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSR----KGS 816
              +++  +D DG+             +G+ I   E    + D TT  +         + S
Sbjct: 842  RNAIYDKLDDDGIIAPGIRVSGDDVVIGKTITLPETDDEL-DSTTKRFTKRDASTFLRNS 900

Query: 817  ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS 876
            E+  VD V + + NS+   +   IR R  R P IGDKF+SRHGQKG C   +   DMPFS
Sbjct: 901  ETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFS 958

Query: 877  GVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTD 936
               G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF ++V          
Sbjct: 959  -CEGLTPDIIINPHAIPSRMTIGHLIECIQGKVSANKGEIGDATPFNDAVN--------- 1008

Query: 937  ESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVR 996
                 V ++  +L+  G+   G EV+Y+G  G ++  ++F+GP YYQRL+HMV DK   R
Sbjct: 1009 -----VQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSR 1063

Query: 997  STGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLC 1056
            + G +  + RQP++GR R GG+RFGEMERD  ++HGAA  L +RL   SD +   +C+ C
Sbjct: 1064 ARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHICNFC 1123

Query: 1057 GSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAA 1116
            G +  A   +                      C  C+    +  V +PY  + L  EL A
Sbjct: 1124 GLIAIANLRN------------------NTFECKGCKNKTQISQVRLPYAAKLLFQELMA 1165

Query: 1117 MNI 1119
            MNI
Sbjct: 1166 MNI 1168


>gi|449330210|gb|AGE96471.1| DNA-directed RNA polymerase II second largest subunit
            [Encephalitozoon cuniculi]
          Length = 1141

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 324/1140 (28%), Positives = 513/1140 (45%), Gaps = 155/1140 (13%)

Query: 36   DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN---FGQFPVMLKTRRCHLQGADSQK 92
            +  R   ++Y   L  DV  + L     V + +++   FG  PVML++  C L G   + 
Sbjct: 93   NEARIRDLTYASPLFIDVTKETLSELGVVDKHKYSRVPFGSLPVMLRSSYCVLYGLGDKD 152

Query: 93   LVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCV 152
            L+ L E   + GGYFI+NG E+V    I+ ++    + V    + +   YT  A  IR V
Sbjct: 153  LIDLGECPYDQGGYFIVNGSEKV----IVAQERMASNTVYVFKKAQPATYTHYAE-IRSV 207

Query: 153  ----RKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
                 ++ S++++KL     G +R+   L  ++  +P+ ++ +AL   +D EI +H+   
Sbjct: 208  PEKSSRNPSTLSMKLCRS-PGVIRVSLPLVKQD--VPLFVLYRALGFLSDKEIIDHILYE 264

Query: 209  YDE------KYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGL 262
             DE      K   E+G V               VQD ++      L +IG+   P+  G 
Sbjct: 265  DDEEMFELLKESIEEGTV---------------VQDQNVA-----LDYIGKRSAPI--GT 302

Query: 263  QSESYYAVAETVIRDYIFVHLNDN----NDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQN 318
              E    +A+ ++   +  H+         K   + +++Q+L  +       D+ D    
Sbjct: 303  PQEKRIVMAKDLLAKEVLPHIGTQEFCETKKAYFIGYIVQRLLLVALGRRNPDDRDHYGK 362

Query: 319  QEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQI 378
            + + L G L+    +   +       + +Q  IEN  +    FN+A   K      +  I
Sbjct: 363  KRMDLSGPLLASLFRTLFKKLCVDTTRHMQKCIENGRE----FNIALGLK------ASII 412

Query: 379  GTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSV 438
                   L TG    Q    +Q RAG      R NF+  +S  R V+      G +  + 
Sbjct: 413  TQGFRYALATGNWGDQAKA-MQTRAGVAQVLNRYNFVSTLSHLRRVNTPIEKEG-KLAAP 470

Query: 439  RKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIG 498
            R+L    WG +CP  TP+G+ CGL+ +++    + S   S G + +F          L  
Sbjct: 471  RQLHNTHWGMVCPAETPEGQACGLVKNLSLMAYI-SVGSSSGPLIEF----------LEE 519

Query: 499  VGMIPSLPKLVKSGPPAVLSVLLDGRVVGV--IPSSEIEKVVAHLRRLKVSAASVIPDDL 556
             G + SL ++  S   A   + ++G  VG+   P   I+ +    R L++     I  D+
Sbjct: 520  CG-VESLEEISTSQLDAATKIFVNGVWVGIHSDPVGLIKSLKLLRRSLEMDKEVSIVRDI 578

Query: 557  EVGYVPLSLGGAYPGL-YLFTSPPKFV---RPVRNISLPSEESQNIELIGPFEQVFMEIR 612
                + +      P    L     K V     +R +     +  N+   G  E  F+++ 
Sbjct: 579  REKEIRVQSDAGRPCRPLLVVKDNKLVITAEDIRKLKRGEIKWDNLVTSGFIE--FLDVE 636

Query: 613  -------------CPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQ 659
                           D        +   TH EIHP  +L + A+  P+ DHNQSPRN YQ
Sbjct: 637  EEEMSMIAMNTKILADESRNSSDVSVSYTHCEIHPALILGICASTIPFPDHNQSPRNTYQ 696

Query: 660  CQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAY 719
              M KQ MG        R D     L  PQ P+V T +       E P+G NA+VA+  Y
Sbjct: 697  SAMGKQAMGIYATNFLLRMDTLSNILFYPQKPLVTTKSMEYLRFKELPSGQNALVAIACY 756

Query: 720  TGYDMEDAMILNKSSVDRGMCHGQIYQTETID-------LSDDGNKVDRGQKLFRRNKDA 772
            +GY+ ED++I+N+S++DRG+     Y+T T         ++++  K  RG  L  +N + 
Sbjct: 757  SGYNQEDSIIMNQSAIDRGLFRSFFYRTYTDQESMSRPGVNEEFCKPSRGAVLRMKNLN- 815

Query: 773  KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSR--KGSESV 819
               ++ +D DGL             +G++    +P  S  +     ++ +S   + +E+ 
Sbjct: 816  ---YNKLDDDGLISPGTRVTGDDVLIGKITPILDPERSTKEAPVYVYKDSSTAMRRTETG 872

Query: 820  FVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVT 879
             VD V V  K+       + ++ R  R P +GDKF+SRH QKG         DMPF+   
Sbjct: 873  IVDTVIVTNKDGYKF---SKVKVRSGRIPQMGDKFASRHAQKGTIGITLRQEDMPFTS-E 928

Query: 880  GMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESK 939
            G+ PD+IINPHA PSRMTI  L+E +  K  ++ G+  DATPF               S 
Sbjct: 929  GIVPDIIINPHAIPSRMTIGHLIECLLGKVSAMSGEEGDATPF---------------SG 973

Query: 940  SLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTG 999
              VD +   L++ GF   G+EV+Y+G+ G +L  ++F GP YYQRL+HMV DK   R+ G
Sbjct: 974  VTVDGISSRLKSYGFQQRGLEVMYNGMTGRKLRAQMFFGPTYYQRLKHMVDDKIHARARG 1033

Query: 1000 TMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSV 1059
             +  +TRQP++GR R GG+RFGEMERD +++HGA+  L +RL   SD +   VC  CG  
Sbjct: 1034 PLQILTRQPVEGRSRDGGLRFGEMERDCIISHGASAFLKERLMDVSDAYSCYVCDFCG-- 1091

Query: 1060 LTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
                        +  +GG       K   C  C  +  +  V +PY F+ L  EL  MNI
Sbjct: 1092 ------------LLAMGG------SKVNECKGCNNTTNVSMVEIPYAFKLLIQELMGMNI 1133


>gi|428180722|gb|EKX49588.1| hypothetical protein GUITHDRAFT_159421 [Guillardia theta CCMP2712]
          Length = 1185

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 336/1153 (29%), Positives = 534/1153 (46%), Gaps = 159/1153 (13%)

Query: 38   CRQAKISYTGKLMADV---EFQYLDAGSPVV-----RERFNFGQFPVMLKTRRCHLQGAD 89
             R  K++Y+ +L  D+   +++    GS  +      ER   G+ PVML++  C L G  
Sbjct: 104  ARLRKLTYSCQLFVDITLRKYKVASDGSEQLDNIDEHERVPLGKVPVMLRSEVCRLFGKY 163

Query: 90   SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
            ++ ++ LKE   + GGYF++NG E+V    +L ++    ++V   F+     +   A V 
Sbjct: 164  NKDIMDLKECPQDQGGYFVINGSEKV----LLAQERRANNLV-FVFKKTLGKFAYVAEVG 218

Query: 150  RCVRKDQ---SSVTLKLYYLLN-----GSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEI 201
              V K     S++ +KL+   N      SV L      KE  +P+ IV +AL   +D EI
Sbjct: 219  SQVEKGNKPPSTLYMKLWNRENNARFGASVVLTLPYVRKE--IPIVIVFRALGIESDREI 276

Query: 202  FNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDG 261
              H+   Y+ K  +   A+  P + E      A+ +DLS  TR   L +IG     +   
Sbjct: 277  LEHIV--YNLKDVQMMEAL-RPSLDE-----AAQGKDLS--TREAALDYIGRRALGMTTS 326

Query: 262  LQSESYYAVAETVIRD---YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQN 318
             ++   +A  + +IR+   +I +       K   L ++  +L +        D+ D   N
Sbjct: 327  RENRIQHA-HDILIRELLPHIGITEESLTKKQYFLGYVCNRLLACSLGRRQPDDRDHYGN 385

Query: 319  QEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQI 378
            + + + G L+    K   +  +++ +K +QD ++N GK+ +  N A  +  + K      
Sbjct: 386  KRVDMAGPLLAGLFKGCFKRLVKEFRKSLQDSLDN-GKEVNM-NTAFKQDFITK------ 437

Query: 379  GTSIETMLKTGRLATQTGLDLQQ--RAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
               I+  + TG           Q  R G +    RL F   +S  R  +      G +  
Sbjct: 438  --GIKYCMATGNWGVGKAAVAGQATRTGVSQVLSRLTFAAALSHLRRANTPIGKEG-KIA 494

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G+ CGL+ +++    + +Y    G         + ++  L
Sbjct: 495  QPRQLHNTQWGVVCPAETPEGQACGLVKNLS----LMTYVSVGGA--------SQVIIEL 542

Query: 497  IGVGMIPSLPKLVKSGPPAVLS------VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAAS 550
            +  G +  L +L     PA+ +      V ++G  VG+    +        +R +++   
Sbjct: 543  LQAGGMEELEELAS---PAICASSRFSKVFVNGVWVGMTDDPDNLANTLREQRREMTIGG 599

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV--------------RNISLPSEESQ 596
            +I    EVG V   +G     L++ T   + +RP+               NI   ++  Q
Sbjct: 600  MIH---EVG-VARDIGERE--LFISTDYGRLMRPLLIVDKETGFLNLKRSNIIHMTQNEQ 653

Query: 597  N----------IELIGPFEQ----VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVA 642
                       IE I   E+    + M ++     D G  + +  TH EIHP  +L V A
Sbjct: 654  TTWSEILRKGFIEYIDVMEEETCYIAMLVK-----DVGSNDLYQYTHCEIHPAMILGVCA 708

Query: 643  NLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYG 702
            ++ P+ DHNQSPRN YQ  M KQ MG      + R D   + L  PQ P+V+T++     
Sbjct: 709  SIIPFPDHNQSPRNTYQSAMGKQAMGIYATNYQVRIDTLAHVLYYPQKPLVKTHSMDYLK 768

Query: 703  IDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDG----NK 758
              E P G N IVA+  Y+GY+ ED++I+++SS+DRGM     Y++ T +   +G     +
Sbjct: 769  FRELPAGQNLIVAIAVYSGYNQEDSLIMSQSSIDRGMFRSMFYRSYTDEQKTEGVLCLEQ 828

Query: 759  VDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR----- 813
             ++ Q+    +  ++  +  +D DGL +  Q +   +         TNS  ++       
Sbjct: 829  FEKPQREELGSASSRVNYDKLDVDGLVFPAQNVEDRDIIIGKTTLVTNSDDSDQAQIAVK 888

Query: 814  -------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQ 866
                   + +E   VD V +   NS    +   I+ R  R P IGDKF+SRHGQKG    
Sbjct: 889  RDSSTRLRHNEHGVVDQVLL-TTNSDTGQRFVQIKVRAVRVPQIGDKFASRHGQKGTVGI 947

Query: 867  LWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSV 926
             +   DMPF+   G+ PDLI+NPHA PSRMTI  L+E++  K G L G   DATPF N V
Sbjct: 948  TYRQDDMPFTS-EGVSPDLIVNPHAIPSRMTIGHLIETLLGKVGCLTGDEGDATPF-NEV 1005

Query: 927  KKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLR 986
                           V ++ +ML + G+  HG E LY+G  G  LT  +F GP YYQRL+
Sbjct: 1006 N--------------VKDVSDMLHSRGYQRHGNERLYNGHTGRPLTALVFFGPTYYQRLK 1051

Query: 987  HMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSD 1046
            HMV DK   R+ G    + RQP++GR R GG+RFGEMERD ++AHG+A +L ++L T SD
Sbjct: 1052 HMVDDKIHSRARGPTQMLNRQPMEGRARDGGLRFGEMERDCMIAHGSANVLREKLFTQSD 1111

Query: 1047 YHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYV 1106
             ++  +C  CG +  A                   R P + TC    +S GM  + +PY 
Sbjct: 1112 GYMTHICQDCGLIAIANL------------DSNLYRCPNQATCR--NSSIGM--IEIPYA 1155

Query: 1107 FRYLAAELAAMNI 1119
             + L  EL AM I
Sbjct: 1156 AKLLFQELMAMQI 1168


>gi|324120670|dbj|BAJ78726.1| RNA polymerase II second largest subunit [Eretes sticticus]
          Length = 1174

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 323/1142 (28%), Positives = 511/1142 (44%), Gaps = 138/1142 (12%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   +    ++   G+ P+ML++  C L G   
Sbjct: 108  MPNEARLRNLTYSAPLYVDITKTIVKDGEDPIETQHQKTFIGKIPIMLRSTYCLLSGLTD 167

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   + +D +  Y  KA +  
Sbjct: 168  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAMKDGKYAY--KAEIRS 222

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  +  G   +     G+  +         +P+ IV +AL    D +
Sbjct: 223  CLEHSSRPTSTLWVNMMARGGQAIKKAAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 282

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +++           P + E VK  L E     +  +   L  IG   +    
Sbjct: 283  ILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RGAKP 327

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     A  +++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 328  GVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 387

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   ++ +++ +   Q  I + GK F+  +LA IK       +K
Sbjct: 388  GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFI-DKGKDFNL-DLA-IK-------TK 437

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   +   L TG    Q     Q RAG +    RL F   +S  R V+      G +  
Sbjct: 438  MITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 495

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G   GL+ ++     ++                + IL  L
Sbjct: 496  KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 544

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  S       + ++G  VG+    + E+++A LR+L+      VS  S
Sbjct: 545  EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVSEVS 601

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
            +I D  +      +  G      L       +   R+I +  E   N            +
Sbjct: 602  MIRDIRDREIRIYTDAGRICRPLLIVENGNLLLKKRHIDMLKEREYNNYGWQVLVASGVV 661

Query: 599  ELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQSPR 655
            E I   E+   M    PD     +  A+  T  H EIHP  +L V A++ P+ DHNQSPR
Sbjct: 662  EYIDTLEEETVMIAMSPDDLRQEKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPR 721

Query: 656  NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
            N YQ  M KQ MG  +     R D   + L  P  P+V T +       E P G N+IVA
Sbjct: 722  NTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVA 781

Query: 716  VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVDRGQKLFRRNKDA-- 772
            +L YTGY+ ED++ILN S+V+RG      Y++ +  +    G++ ++ +K  R+      
Sbjct: 782  ILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDAESKRLGDQEEQFEKPTRQTCQGMR 841

Query: 773  KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSR----KGSE 817
             +L+  +D DG+             +G+ I   E    + D TT  +         + SE
Sbjct: 842  NALYDKLDDDGIISPGIRVSGDDVVIGKTITLPENDDEL-DGTTKRYTKRDASTFLRNSE 900

Query: 818  SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
            +  VD V + + NS+   +   IR R  R P IGDKF+SRHGQKG C   +   DMPF+ 
Sbjct: 901  TGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT- 957

Query: 878  VTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDE 937
              G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF ++V           
Sbjct: 958  CEGLTPDIIINPHAIPSRMTIGHLIECIQGKVSANKGEIGDATPFNDAVN---------- 1007

Query: 938  SKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRS 997
                V ++  +L+  G+   G EV+Y+G  G ++  +IF+GP YYQRL+HMV DK   R+
Sbjct: 1008 ----VQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHSRA 1063

Query: 998  TGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCG 1057
             G +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +RL   SD +   VC+ CG
Sbjct: 1064 RGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCG 1123

Query: 1058 SVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAM 1117
             +  A   +                      C  C+    +  V +PY  + L  EL +M
Sbjct: 1124 LIAIANLRN------------------NTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 1165

Query: 1118 NI 1119
            NI
Sbjct: 1166 NI 1167


>gi|340726257|ref|XP_003401477.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Bombus
            terrestris]
 gi|350425904|ref|XP_003494269.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Bombus
            impatiens]
          Length = 1175

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 324/1143 (28%), Positives = 511/1143 (44%), Gaps = 140/1143 (12%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   +    ++   G+ P+ML+++ C L G   
Sbjct: 109  MPNEARLRNLTYSAPLYVDITKTIVKDGEDPIETQHQKTFIGKIPIMLRSKYCLLAGLSD 168

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  Y  K+ +  
Sbjct: 169  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKYAY--KSEIRS 223

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  +      +     G+  +         +P+ IV +AL    D +
Sbjct: 224  CLEHSSRPTSTLWINMMAKSGASIKKSAIGQRIIAIIPYIKQEIPIMIVFRALGFVADRD 283

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEH-FQPVI 259
            I  H+   +D+           P + E VK  L E     +  +   L  IG    +P  
Sbjct: 284  ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGTRGARP-- 328

Query: 260  DGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
             G+  E     A  +++  +  H+  ++     K   L +M+ +L S        D+ D 
Sbjct: 329  -GVTKEKRIKYAREILQKEMLPHVGISDFCETKKAYFLGYMVHRLLSASLGRRELDDRDH 387

Query: 316  LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPS 375
              N+ + L G L+    +   ++ L K  +L   +  + GK F+   LA IK       +
Sbjct: 388  YGNKRLDLAGPLLAFLFRGLFKN-LMKEVRLYAQKFIDRGKDFNL-ELA-IK-------T 437

Query: 376  KQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
            K I   +   L TG    Q     Q RAG +    RL F   +S  R V+      G + 
Sbjct: 438  KIITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KL 495

Query: 436  TSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV 495
               R+L    WG LCP  TP+G   GL+ ++     ++                + IL  
Sbjct: 496  AKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEF 544

Query: 496  LIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAA 549
            L    M  +L ++  S       + ++G  VG+    + ++++A LR+L+      VS  
Sbjct: 545  LEEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPDQLMATLRKLRRQMDIIVSEV 601

Query: 550  SVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN----IELIGP-- 603
            S+I D  +      +  G      L       +   R+I +  E   N     EL+G   
Sbjct: 602  SMIRDIRDREIRIYTDAGRISRPLLIVEGQTLLLKKRHIDMLKERDYNNDGWQELVGSGV 661

Query: 604  -------FEQVFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQSP 654
                    E+  M    P+     +  A+  T  H EIHP  +L V A++ P+ DHNQSP
Sbjct: 662  VEYIDTLEEETVMIAMSPEDLRQEKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSP 721

Query: 655  RNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIV 714
            RN YQ  M KQ MG  +     R D   + L  P  P+V T +       E P G N+IV
Sbjct: 722  RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIV 781

Query: 715  AVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD-GNKVDRGQKLFRRNKDA- 772
            A+L YTGY+ ED++ILN S+V+RG      Y++     S   G++ ++ +K  R+     
Sbjct: 782  AILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKRIGDQEEQFEKPTRQTCQGM 841

Query: 773  -KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSR----KGS 816
              +++  +D DG+             +G+ I   E    + D TT  +         + S
Sbjct: 842  RNAIYDKLDDDGIIAPGIRVSGDDVVIGKTITLPEADDEL-DSTTKRFTKRDASTFLRNS 900

Query: 817  ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS 876
            E+  VD V + + NS+   +   IR R  R P IGDKF+SRHGQKG C   +   DMPFS
Sbjct: 901  ETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFS 958

Query: 877  GVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTD 936
               G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF ++V          
Sbjct: 959  -CEGLTPDIIINPHAIPSRMTIGHLIECIQGKVSANKGEIGDATPFNDAVN--------- 1008

Query: 937  ESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVR 996
                 V ++  +L+  G+   G EV+Y+G  G ++  ++F+GP YYQRL+HMV DK   R
Sbjct: 1009 -----VQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSR 1063

Query: 997  STGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLC 1056
            + G +  + RQP++GR R GG+RFGEMERD  ++HGAA  L +RL   SD +   +C+ C
Sbjct: 1064 ARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHICNFC 1123

Query: 1057 GSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAA 1116
            G +  A   +                      C  C+    +  + +PY  + L  EL A
Sbjct: 1124 GLIAIANLRN------------------NTFECKGCKNKTQISQIRLPYAAKLLFQELMA 1165

Query: 1117 MNI 1119
            MNI
Sbjct: 1166 MNI 1168


>gi|385805646|ref|YP_005842044.1| RNA Polymerase [Fervidicoccus fontis Kam940]
 gi|383795509|gb|AFH42592.1| RNA Polymerase [Fervidicoccus fontis Kam940]
          Length = 1141

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 332/1154 (28%), Positives = 526/1154 (45%), Gaps = 180/1154 (15%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
              R   I+Y   +   +E   ++ G   ++++   G  P+M+K++   L     ++L+ +
Sbjct: 101  EARVRNITYASPMY--LEITLVENGVESIKDKVYIGDLPIMIKSKLDPLSKMSPEELIKI 158

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREG----YTDKAVVIRCV 152
             E+  + GGYFI+NG E+V    I+ +++  M   R    + + G    YT KA  I   
Sbjct: 159  NEDPDDPGGYFIINGTEKV----IIAQED--MVTNRVLVDEGKAGSNVLYTAKA--ISST 210

Query: 153  RKDQSSVTLKLYYLLNGSVRLGFW-LQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDE 211
               + SV ++L+   +G++ + F  + GK   LP  I+++AL    D +I   ++     
Sbjct: 211  GSYRISVMMELHK--DGTITISFGGVPGK---LPFAILMRALGFEKDQDIVYAVS----- 260

Query: 212  KYKKEKGAVGSPLVSERVKIILAEVQ-DLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAV 270
                        L  E   ++L  ++   S+ T    L +IG     V  G   E+    
Sbjct: 261  ------------LNPEVQSLLLPSLEASRSIATVDDALDYIGTR---VAIGQVRENRIER 305

Query: 271  AETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVS----DNPDSLQNQEILLPGH 326
            A+ VI  Y F HL  +        F L ++ +++   S+     D+ D   N+ + L G 
Sbjct: 306  AKQVIDKYFFPHLGSSPKDRRKKGFFLAQMANMILELSLGWREPDDRDHYANKRLKLAGD 365

Query: 327  LITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETML 386
            L+    +   ++++               K F++      +KV+ ++   +I + + + +
Sbjct: 366  LLATLFRASFKNFV---------------KDFNY----QAEKVLTRSKRFKISSIVRSDV 406

Query: 387  KTGRL--ATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPE 444
             T R+  A  TG  +  + G +   +R N++  +S  R V    S +       R L   
Sbjct: 407  MTERIRHALATGTWVGGKTGVSQLLDRTNWMSMLSHLRRVVSPLSRSQ-PLFKARDLHGT 465

Query: 445  SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP- 503
             WG +CP  TP+G  CGL+ +++    +      +            +   L  +G+IP 
Sbjct: 466  QWGRMCPFETPEGPNCGLVKNLSLLTYITVGISEK-----------KVENQLYKLGVIPV 514

Query: 504  --SLPKLVKSGPPAVLS---VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEV 558
              +L   V++     L    V L+GR +G  P  E  K+ + +R ++      +  ++ V
Sbjct: 515  EEALKDAVENNNTQYLEMTRVYLNGRHIGYYPDGE--KLASTIREMRRKGD--LHHEINV 570

Query: 559  GYVPLSLGGAYPGLYLFTSPPKFVRP---VRNISLPSEESQNIELIGPFEQVFME----- 610
             Y           LY+ T   +  RP   VRN   P+   ++IE +   E+ F +     
Sbjct: 571  VYYERP---QIKELYVNTDAGRIRRPLIIVRN-GKPAVTKRDIEALRKGEKTFSDLVKEG 626

Query: 611  -IRCPDGGDGGRRNAFPA--------------THEEIHPTGMLSVVANLTPYSDHNQSPR 655
             I   D  +    NA+ A              TH E+   G+  V A+  PY +HNQSPR
Sbjct: 627  KIEYLDAEE--EENAYIALDPSDLLGPNGKEYTHLELWTAGIFGVAASTIPYIEHNQSPR 684

Query: 656  NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
            N YQ  M KQ +G        R D + + L  P+ P+V+T        +E P G NA+VA
Sbjct: 685  NTYQSAMVKQALGLYAANFNVRTDSRGHILHHPEKPLVQTKPLEVIRYNEKPAGQNAVVA 744

Query: 716  VLAYTGYDMEDAMILNKSSVDRGMCHGQIY-------------QTETIDLSDDGNKVDRG 762
            +++YTGY++EDA+I NKSSV+RG      +             Q + I++ + G K+ RG
Sbjct: 745  IMSYTGYNIEDALIFNKSSVERGFMRSTFFRLYSTEEKKYPGGQEDKIEVPEAGVKIYRG 804

Query: 763  QKLFRR-NKDAKSLHSVIDSDGLPYVGQMIHPG--EPY------CSIYDKTTNSWRTNSR 813
             +++++ + D         +DG   +G+   P   E +       S+   T+ + R   +
Sbjct: 805  FEVYKKLDPDGIISPETEVADGEALIGKTSPPRFLEEFKEYGFGASVRKDTSVTIRYGEK 864

Query: 814  KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDM 873
               +SVF+         ++   +   +R R  R P IGDKF+SRHGQKGV   L P  DM
Sbjct: 865  GVVDSVFIS-------ETQEGDKLVKVRVRDYRIPEIGDKFASRHGQKGVIGMLIPQYDM 917

Query: 874  PFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDT 933
            P++   G+ PD+IINPHAFPSRMT+  LLE +A K  +L GK +DATPF           
Sbjct: 918  PYTE-EGIVPDIIINPHAFPSRMTLGQLLEMLAGKTAALLGKTVDATPF----------- 965

Query: 934  GTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKF 993
                SK  V+E+   L   G++  G EV+Y G  G  +   I IG VYYQRL HMV+DKF
Sbjct: 966  ----SKEPVEEIRMKLMKKGYSPDGREVMYDGRTGEIIGVPIMIGIVYYQRLHHMVADKF 1021

Query: 994  QVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVC 1053
              RS G +  +TRQP +GR R GG+RFGEMERD L+ HGA+ LL +RL   SD  V  VC
Sbjct: 1022 HARSRGPVQLLTRQPTEGRAREGGLRFGEMERDVLVGHGASMLLRERLLESSDKTVIYVC 1081

Query: 1054 SLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAE 1113
            + CG                 IG     R      C        +  V + Y F+ L  E
Sbjct: 1082 AKCG----------------HIGWF--DRNKNAYVCPIHGDKGEIYPVEVAYGFKLLIQE 1123

Query: 1114 LAAMNIKITLQLGD 1127
            L +M I   L+LGD
Sbjct: 1124 LMSMGIMPRLKLGD 1137


>gi|324120632|dbj|BAJ78707.1| RNA polymerase II second largest subunit [Euborellia plebeja]
          Length = 1174

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 327/1142 (28%), Positives = 512/1142 (44%), Gaps = 138/1142 (12%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYL-DAGSPV--VRERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    + D   P+    ++   G+ P+ML++  C L G   
Sbjct: 108  MPNEARLRNLTYSAPLYVDITKTIIKDKEEPIETQHQKTFIGKIPIMLRSTYCLLSGLTD 167

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  Y  KA +  
Sbjct: 168  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKFAY--KAEIRS 222

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  +  G   +     G+  +         +P+ IV +AL    D +
Sbjct: 223  CLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 282

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +D+           P + E VK  L E     +  +   L  IG   +    
Sbjct: 283  ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RGARP 327

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     A  +++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 328  GVTREKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 387

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   ++ +++ +   Q  I + GK F+  +LA IK       +K
Sbjct: 388  GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFI-DRGKDFNL-DLA-IK-------TK 437

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   +   L TG    Q     Q RAG +    RL F   +S  R V+      G +  
Sbjct: 438  IITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 495

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G   GL+ ++     ++                + IL  L
Sbjct: 496  KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 544

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  S       + ++G  VG+    + E+++A LR+L+      VS  S
Sbjct: 545  EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVSEVS 601

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
            +I D  +      +  G      L       +   R+I +  E   N            +
Sbjct: 602  MIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKRHIDMLKEREYNNYGWQVLVASGVV 661

Query: 599  ELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQSPR 655
            E I   E+   M    PD     +  A+  T  H EIHP  +L V A++ P+ DHNQSPR
Sbjct: 662  EYIDTLEEETVMIAMSPDDLRQDKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPR 721

Query: 656  NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
            N YQ  M KQ MG  +     R D   + L  P  P+V T +       E P G N+IVA
Sbjct: 722  NTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVA 781

Query: 716  VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD-GNKVDRGQKLFRRNKDA-- 772
            +L YTGY+ ED++I+N S+V+RG      +++     S   G++ ++ +K  R+      
Sbjct: 782  ILCYTGYNQEDSVIMNASAVERGFFRSVFFRSYKDSESKRIGDQEEQFEKPTRQTCQGMR 841

Query: 773  KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSR----KGSE 817
             +L+  +D DG+             +G+ I   E    + D TT  +         + SE
Sbjct: 842  NALYDKLDDDGIISPGLRVSGDDVVIGKTITLPENEDEL-DGTTKRYTKRDASTFLRNSE 900

Query: 818  SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
            +  VD V + + NS+   +   IR R  R P IGDKF+SRHGQKG C   +   DMPF+ 
Sbjct: 901  TGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT- 957

Query: 878  VTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDE 937
              G+ PD+IINPHA PSRMTI  L+E +  K  S  G+  DATPF ++V           
Sbjct: 958  CEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSSNKGEIGDATPFNDAVN---------- 1007

Query: 938  SKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRS 997
                V ++  +L+  G+   G EV+Y+G  G ++  +IF+GP YYQRL+HMV DK   R+
Sbjct: 1008 ----VQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHSRA 1063

Query: 998  TGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCG 1057
             G +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +RL   SD +   VC+LCG
Sbjct: 1064 RGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNLCG 1123

Query: 1058 SVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAM 1117
             +  A   +                      C  C+    +  V +PY  + L  EL +M
Sbjct: 1124 LIAIANMRN------------------NTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 1165

Query: 1118 NI 1119
            NI
Sbjct: 1166 NI 1167


>gi|324120628|dbj|BAJ78705.1| RNA polymerase II second largest subunit [Teleogryllus emma]
          Length = 1174

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 322/1141 (28%), Positives = 510/1141 (44%), Gaps = 136/1141 (11%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   +    ++   G+ P+ML++  C L G   
Sbjct: 108  MPNEARLRNLTYSAPLYVDITKTIIKDGEEPIETQHQKTFIGKIPIMLRSTYCLLNGLTD 167

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  Y  KA +  
Sbjct: 168  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKYAY--KAEIRS 222

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  +  G   +     G+  +         +P+ IV +AL    D +
Sbjct: 223  CLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAVLPYIKQEIPIMIVFRALGFVADRD 282

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +D+           P + E VK  L E     +  +   L  IG   +    
Sbjct: 283  ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RGARP 327

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     A  +++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 328  GVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 387

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   ++ +++ +   Q  I + GK F+   LA IK       +K
Sbjct: 388  GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFI-DRGKDFNL-ELA-IK-------TK 437

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   +   L TG    Q     Q RAG +    RL F   +S  R V+      G +  
Sbjct: 438  IITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 495

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G   GL+ ++     ++                + IL  L
Sbjct: 496  KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 544

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  S       + ++G  VG+    + E+++A LR+L+      VS  S
Sbjct: 545  EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVSEVS 601

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
            +I D  +      +  G      L       +   R+I +  E   N            +
Sbjct: 602  MIRDIRDREIRIYTDAGRICRPLLIVENGNLLLKKRHIDMLKEREYNNFGWQVLVASGVV 661

Query: 599  ELIGPFEQ-VFMEIRCPDGGDGGRRNAF--PATHEEIHPTGMLSVVANLTPYSDHNQSPR 655
            E I   E+   M    PD     +  A+    TH EIHP  +L V A++ P+ DHNQSPR
Sbjct: 662  EYIDTLEEETVMIAMSPDDLRQEKEYAYCMTYTHCEIHPAMILGVCASIIPFPDHNQSPR 721

Query: 656  NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
            N YQ  M KQ MG  +     R D   + L  P  P+V T +       E P G N+IVA
Sbjct: 722  NTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVA 781

Query: 716  VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVDRGQKLFRRNKDA-- 772
            +L YTGY+ ED++I+N S+V+RG      +++ +  +    G++ ++ +K  R+      
Sbjct: 782  ILCYTGYNQEDSVIMNASAVERGFFRSVFFRSYKDAESKRIGDQEEQFEKPTRQTCQGMR 841

Query: 773  KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSR---KGSES 818
             +L+  +D DG+             +G+ I   +    +   T    + ++    + SE+
Sbjct: 842  NALYDKLDDDGIISPGIRVSGDDVVIGKTITLPDNEDELEGTTKRYTKRDASTFLRNSET 901

Query: 819  VFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGV 878
              VD V + + NS+   +   IR R  R P IGDKF+SRHGQKG C   +   DMPF+  
Sbjct: 902  GIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT-C 958

Query: 879  TGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDES 938
             G+ PD+IINPHA PSRMTI  L+E +  K  S  G+  DATPF ++V            
Sbjct: 959  EGLTPDIIINPHAIPSRMTIGHLIECLQGKVSSNKGEIGDATPFNDAVN----------- 1007

Query: 939  KSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRST 998
               V ++  +L+  G+   G EV+Y+G  G ++  +IF+GP YYQRL+HMV DK   R+ 
Sbjct: 1008 ---VQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHSRAR 1064

Query: 999  GTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGS 1058
            G +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +RL   SD +   VC+ CG 
Sbjct: 1065 GPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGL 1124

Query: 1059 VLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMN 1118
            +  A   +                      C  C+    +  V +PY  + L  EL AMN
Sbjct: 1125 IAIANLRN------------------NTFECKGCKNKTQISQVRLPYAAKLLFQELMAMN 1166

Query: 1119 I 1119
            I
Sbjct: 1167 I 1167


>gi|324120634|dbj|BAJ78708.1| RNA polymerase II second largest subunit [Forficula hiromasai]
          Length = 1174

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 323/1142 (28%), Positives = 514/1142 (45%), Gaps = 138/1142 (12%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYL-DAGSPV--VRERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    + D   P+    ++   G+ P+ML++  C L G   
Sbjct: 108  MPNEARLRNLTYSAPLYVDITKTIIKDKEEPIETQHQKTFIGKIPIMLRSTYCLLSGLTD 167

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  Y  K+ +  
Sbjct: 168  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKYAY--KSEIRS 222

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  +  G   +     G+  +         +P+ IV +AL    D +
Sbjct: 223  CLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 282

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +D+           P + E VK  L E     +  +   L  IG   +    
Sbjct: 283  ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RGARP 327

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     A  +++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 328  GVTREKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 387

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   ++ +++ +   Q  I + GK F+  +LA IK       +K
Sbjct: 388  GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFI-DRGKDFN-LDLA-IK-------TK 437

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   +   L TG    Q    +  RAG +    RL F   +S  R V+      G +  
Sbjct: 438  IITDGLRYSLATGNWGDQKKAHM-ARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 495

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G   GL+ ++     ++                + IL  L
Sbjct: 496  KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 544

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  S       + ++G  VG+    + E+++A LR+L+      VS  S
Sbjct: 545  EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVSEVS 601

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
            +I D  +      +  G      L       +    +I +  E   N            +
Sbjct: 602  MIRDIRDREIRIYTDAGRICRPLLIVENGNLLLKKHHIDMLKEREHNNYGWQVLVASGVV 661

Query: 599  ELIGPF-EQVFMEIRCPDGGDGGRRNAFPA--THEEIHPTGMLSVVANLTPYSDHNQSPR 655
            E I    E+  M    PD     +  A+    TH EIHP  +L V A++ P+ DHNQSPR
Sbjct: 662  EYIDTLEEETVMIAMSPDDLRQEKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPR 721

Query: 656  NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
            N YQ  M KQ MG  +     R D   + L  P  P+V T +       E P G N+IVA
Sbjct: 722  NTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVA 781

Query: 716  VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVDRGQKLFRRNKDA-- 772
            +L YTGY+ ED++I+N S+V+RG+     Y++ +  +   +G++ ++ +K  R+      
Sbjct: 782  ILCYTGYNQEDSVIMNASAVERGLFRSVFYRSYKDSESKRNGDQEEQFEKPTRQTCQGMR 841

Query: 773  KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSR----KGSE 817
             +L+  +D DG+             +G+ I   E    + D TT  +         + SE
Sbjct: 842  NALYDKLDDDGIISPGLRVSGDDVVIGKTITLPENEDEL-DGTTKRYTKRDASTFLRNSE 900

Query: 818  SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
            +  VD V + + NS+   +   IR R  R P IGDKF+SRHGQKG C   +   DMPF+ 
Sbjct: 901  TGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT- 957

Query: 878  VTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDE 937
              G+ PD+IINPHA PSRMTI  L+E +  K  S  G+  DATPF ++V           
Sbjct: 958  CEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSSNKGEIGDATPFNDAVN---------- 1007

Query: 938  SKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRS 997
                V ++  +L+  G+   G EV+Y+G  G ++  +IF+GP YYQRL+HMV DK   R+
Sbjct: 1008 ----VQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHSRA 1063

Query: 998  TGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCG 1057
             G +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +RL   SD +   +C+LCG
Sbjct: 1064 RGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHICNLCG 1123

Query: 1058 SVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAM 1117
             +  A   +                      C  C+    +  V +PY  + L  EL +M
Sbjct: 1124 LIAIANMRN------------------NTFECKGCKNKTQISQVKLPYAAKLLFQELMSM 1165

Query: 1118 NI 1119
            NI
Sbjct: 1166 NI 1167


>gi|324120664|dbj|BAJ78723.1| RNA polymerase II second largest subunit [Inocellia japonica]
          Length = 1175

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 325/1142 (28%), Positives = 514/1142 (45%), Gaps = 138/1142 (12%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   +    ++   G+ P+ML++  C L G   
Sbjct: 109  MPNEARLRNLTYSAPLYVDITKTIIKDGDDPIETQHQKTFIGKIPIMLRSTYCLLSGLTD 168

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  Y  KA +  
Sbjct: 169  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDSKYAY--KAEIRS 223

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + +L +  +  G   +     G+  +         +P+ IV +AL    D +
Sbjct: 224  CLEHSSRPTSSLWVNMMARGGQAIKKAAIGQRIIAILPYIRQEIPIMIVFRALGFVADRD 283

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +D+           P + E VK  L E     +  +   L  IG   +    
Sbjct: 284  ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RGARP 328

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     A  +++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 329  GVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   ++ +++ +   Q  I+  GK F+  +LA IK       +K
Sbjct: 389  GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDR-GKDFNL-DLA-IK-------TK 438

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   +   L TG    Q     Q RAG +    RL F   +S  R V+      G +  
Sbjct: 439  MITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 496

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G   GL+ ++     ++                + IL  L
Sbjct: 497  KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  S       + ++G  VG+    + E+++A LR+L+      VS  S
Sbjct: 546  EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVSEVS 602

Query: 551  VIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN----------- 597
            +I D  D E+  +    G     L +  +    ++      L   E  N           
Sbjct: 603  MIRDIRDREI-RIYTDAGRICRPLLIVENGNLLLKKSHVDMLKDREYNNYGWQVLVASGV 661

Query: 598  IELIGPFEQ-VFMEIRCPDGGDGGRRNAF--PATHEEIHPTGMLSVVANLTPYSDHNQSP 654
            +E I   E+   M    P+     + NA+    TH EIHP  +L V A++ P+ DHNQSP
Sbjct: 662  VEYIDTLEEETVMIAMSPEDLRQDKENAYCNTYTHCEIHPAMILGVCASIIPFPDHNQSP 721

Query: 655  RNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIV 714
            RN YQ  M KQ MG  +     R D   + L  P  P+V T +       E P G N+IV
Sbjct: 722  RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIV 781

Query: 715  AVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD-GNKVDRGQKLFRRN-KDA 772
            A+L YTGY+ ED++ILN S+V+RG      Y++     S   G++ ++ +K  R+  +  
Sbjct: 782  AILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKRIGDQEEQFEKPTRQTCQGM 841

Query: 773  KSLH-SVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSR---KGSE 817
            ++ H   +D DG+             +G+ I   E    +   T    + ++    + SE
Sbjct: 842  RNAHYDKLDDDGIISPGIRVSGDDVVIGKTIMLPENEDELEGTTKRYTKRDASTFLRNSE 901

Query: 818  SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
            +  VD V + + NS+   +   IR R  R P IGDKF+SRHGQKG C   +   DMPF+ 
Sbjct: 902  TGVVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT- 958

Query: 878  VTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDE 937
              G+ PD+IINPHA PSRMTI  L+E +  K  S  G+  DATPF ++V           
Sbjct: 959  CEGLTPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVN---------- 1008

Query: 938  SKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRS 997
                V ++  +L+  G+   G EV+Y+G  G ++  ++F+GP YYQRL+HMV DK   R+
Sbjct: 1009 ----VQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRA 1064

Query: 998  TGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCG 1057
             G +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +RL   SD +   VC+ CG
Sbjct: 1065 RGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCG 1124

Query: 1058 SVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAM 1117
             +  A   +                      C  C+    +  V +PY  + L  EL AM
Sbjct: 1125 LIAIANLKN------------------NTFECKGCKNKTQISQVRLPYAAKLLFQELMAM 1166

Query: 1118 NI 1119
            NI
Sbjct: 1167 NI 1168


>gi|449270676|gb|EMC81333.1| DNA-directed RNA polymerase II subunit RPB2, partial [Columba livia]
          Length = 1168

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 325/1143 (28%), Positives = 512/1143 (44%), Gaps = 141/1143 (12%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   ++   ++   G+ P+ML++  C L G   
Sbjct: 103  MPNEARLRNLTYSAPLYVDITKTVIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 162

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   + +D +  YT +     
Sbjct: 163  RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGECR--S 217

Query: 151  CVRKD-QSSVTLKLYYLLNGSV---------RLGFWLQGKEYLLPVGIVLKALVDTNDLE 200
            C+    + + T+ +  L  G           R+   L   +  +P+ IV +AL   +D +
Sbjct: 218  CLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRD 277

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +++           P + E VK  L E     +  +   L  IG   +    
Sbjct: 278  ILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAKP 322

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     A+ V++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 323  GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 382

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   ++ L++ +   Q  I + GK F+   LA IK       ++
Sbjct: 383  GNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFI-DRGKDFNL-ELA-IK-------TR 432

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   ++  L TG    Q     Q RAG +    RL F   +S  R ++      G +  
Sbjct: 433  IISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLA 490

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G   GL+ ++     ++                + IL  L
Sbjct: 491  KPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEFL 539

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  +       + ++G  VG+    + E+++  LR+L+      VS  S
Sbjct: 540  EEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEVS 596

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
            +I D  E      +  G      L     K +   R+I    E   N            +
Sbjct: 597  MIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVV 656

Query: 599  ELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656
            E I   E+  V + +   D  + G       TH EIHP+ +L V A++ P+ DHNQSPRN
Sbjct: 657  EYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRN 716

Query: 657  MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
             YQ  M KQ MG  +     R D   + L  PQ P+V T +       E P G N+IVA+
Sbjct: 717  TYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAI 776

Query: 717  LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA---- 772
             +YTGY+ ED++I+N+S+VDRG      Y++     S  G   D+ +   +  ++     
Sbjct: 777  ASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKG--YDQEEVFEKPTRETCQGM 834

Query: 773  -KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGSE 817
              +++  +D DGL   G  +   +       ++ +       TN R          + SE
Sbjct: 835  RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRFTKRDCSTFLRTSE 894

Query: 818  SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
            +  VD V V +       +   IR R  R P IGDKF+SRHGQKG C   +   DMPF+ 
Sbjct: 895  TGIVDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT- 951

Query: 878  VTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDE 937
              G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF ++V           
Sbjct: 952  CEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVN---------- 1001

Query: 938  SKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRS 997
                V ++  +L   G++  G EVLY+G  G ++T +IFIGP YYQRL+HMV DK   R+
Sbjct: 1002 ----VQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRA 1057

Query: 998  TGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCG 1057
             G +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +RL   SD +   VC+LCG
Sbjct: 1058 RGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCG 1117

Query: 1058 SVLTA-TFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAA 1116
             +  A T  H  +                   C  C+    +  V MPY  + L  EL +
Sbjct: 1118 IMAIANTRTHTYE-------------------CRGCRNKTQISLVRMPYACKLLFQELMS 1158

Query: 1117 MNI 1119
            M+I
Sbjct: 1159 MSI 1161


>gi|392296021|gb|EIW07124.1| Rpa135p [Saccharomyces cerevisiae CEN.PK113-7D]
          Length = 442

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 204/447 (45%), Positives = 276/447 (61%), Gaps = 40/447 (8%)

Query: 703  IDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRG 762
            +D +P G NA+VAV++YTGYDM+DAMI+NKS+ +RG  +G +Y+TE +DL+ + N+ D  
Sbjct: 1    MDNFPNGFNAVVAVISYTGYDMDDAMIINKSADERGFGYGTMYKTEKVDLALNRNRGDPI 60

Query: 763  QKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVF 820
             + F    D   K     +D DGLPY+G  +  G+P C+ +D T N  +  +   SE  +
Sbjct: 61   TQHFGFGNDEWPKEWLEKLDEDGLPYIGTYVEEGDPICAYFDDTLNKTKIKTYHSSEPAY 120

Query: 821  VDYVAV--DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGV 878
            ++ V +  D  N     Q  +I++R  R P IGDKFSSRHGQKGVCS+ WP IDMPFS  
Sbjct: 121  IEEVNLIGDESNKFQELQTVSIKYRIRRTPQIGDKFSSRHGQKGVCSRKWPTIDMPFS-E 179

Query: 879  TGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDES 938
            TG++PD+IINPHAFPSRMTI M +ES+A K G+LHG   D+TP+             +E 
Sbjct: 180  TGIQPDIIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPWI-----------FNED 228

Query: 939  KSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRST 998
             +  D  GE L   G+NYHG E +YSG  G EL  +I++G VYYQRLRHMV+DKFQVRST
Sbjct: 229  DTPADYFGEQLAKAGYNYHGNEPMYSGATGEELRADIYVGVVYYQRLRHMVNDKFQVRST 288

Query: 999  GTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGS 1058
            G ++ +T QP+KGRKR GGIR GEMERD+L+ HG ++LL DRL   SDY  A VC  CGS
Sbjct: 289  GPVNSLTMQPVKGRKRHGGIRVGEMERDALIGHGTSFLLQDRLLNSSDYTQASVCRECGS 348

Query: 1059 VLTATFIHPQKRAIREIGG-------------LPPARAPKKVTCHACQTSK--------- 1096
            +LT     P+  +I  +               L  +   +K+     Q  +         
Sbjct: 349  ILTTQQSVPRIGSISTVCCRRCSMRFEDAKKLLTKSEDGEKIFIDDSQIWEDGQGNKFVG 408

Query: 1097 GME--TVAMPYVFRYLAAELAAMNIKI 1121
            G E  TVA+P+V +YL +EL+AM I++
Sbjct: 409  GNETTTVAIPFVLKYLDSELSAMGIRL 435


>gi|126331583|ref|XP_001362455.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Monodelphis
            domestica]
 gi|395542735|ref|XP_003773281.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Sarcophilus
            harrisii]
          Length = 1174

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 325/1143 (28%), Positives = 512/1143 (44%), Gaps = 141/1143 (12%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   ++   ++   G+ P+ML++  C L G   
Sbjct: 109  MPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 168

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   + +D +  YT +     
Sbjct: 169  RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGECR--S 223

Query: 151  CVRKD-QSSVTLKLYYLLNGSV---------RLGFWLQGKEYLLPVGIVLKALVDTNDLE 200
            C+    + + T+ +  L  G           R+   L   +  +P+ IV +AL   +D +
Sbjct: 224  CLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRD 283

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +++           P + E VK  L E     +  +   L  IG   +    
Sbjct: 284  ILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAKP 328

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     A+ V++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 329  GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   ++ L++ +   Q  I + GK F+   LA IK       ++
Sbjct: 389  GNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFI-DRGKDFNL-ELA-IK-------TR 438

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   ++  L TG    Q     Q RAG +    RL F   +S  R ++      G +  
Sbjct: 439  IISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLA 496

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G   GL+ ++     ++                + IL  L
Sbjct: 497  KPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  +       + ++G  VG+    + E+++  LR+L+      VS  S
Sbjct: 546  EEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEVS 602

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
            +I D  E      +  G      L     K +   R+I    E   N            +
Sbjct: 603  MIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVV 662

Query: 599  ELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656
            E I   E+  V + +   D  + G       TH EIHP+ +L V A++ P+ DHNQSPRN
Sbjct: 663  EYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRN 722

Query: 657  MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
             YQ  M KQ MG  +     R D   + L  PQ P+V T +       E P G N+IVA+
Sbjct: 723  TYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAI 782

Query: 717  LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA---- 772
             +YTGY+ ED++I+N+S+VDRG      Y++     S  G   D+ +   +  ++     
Sbjct: 783  ASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKG--FDQEEVFEKPTRETCQGM 840

Query: 773  -KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGSE 817
              +++  +D DGL   G  +   +       ++ +       TN R          + SE
Sbjct: 841  RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSE 900

Query: 818  SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
            +  VD V V +       +   IR R  R P IGDKF+SRHGQKG C   +   DMPF+ 
Sbjct: 901  TGIVDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT- 957

Query: 878  VTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDE 937
              G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF ++V           
Sbjct: 958  CEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVN---------- 1007

Query: 938  SKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRS 997
                V ++  +L   G++  G EVLY+G  G ++T +IFIGP YYQRL+HMV DK   R+
Sbjct: 1008 ----VQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRA 1063

Query: 998  TGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCG 1057
             G +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +RL   SD +   VC+LCG
Sbjct: 1064 RGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCG 1123

Query: 1058 SVLTA-TFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAA 1116
             +  A T  H  +                   C  C+    +  V MPY  + L  EL +
Sbjct: 1124 IMAIANTRTHTYE-------------------CRGCRNKTQISLVRMPYACKLLFQELMS 1164

Query: 1117 MNI 1119
            M+I
Sbjct: 1165 MSI 1167


>gi|57530101|ref|NP_001006448.1| DNA-directed RNA polymerase II subunit RPB2 [Gallus gallus]
 gi|53127025|emb|CAG31004.1| hypothetical protein RCJMB04_1i14 [Gallus gallus]
          Length = 1174

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 325/1143 (28%), Positives = 512/1143 (44%), Gaps = 141/1143 (12%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   ++   ++   G+ P+ML++  C L G   
Sbjct: 109  MPNEARLRNLTYSAPLYVDITKTVIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 168

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   + +D +  YT +     
Sbjct: 169  RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGECR--S 223

Query: 151  CVRKD-QSSVTLKLYYLLNGSV---------RLGFWLQGKEYLLPVGIVLKALVDTNDLE 200
            C+    + + T+ +  L  G           R+   L   +  +P+ IV +AL   +D +
Sbjct: 224  CLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRD 283

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +++           P + E VK  L E     +  +   L  IG   +    
Sbjct: 284  ILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAKP 328

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     A+ V++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 329  GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   ++ L++ +   Q  I + GK F+   LA IK       ++
Sbjct: 389  GNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFI-DRGKDFNL-ELA-IK-------TR 438

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   ++  L TG    Q     Q RAG +    RL F   +S  R ++      G +  
Sbjct: 439  IISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLA 496

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G   GL+ ++     ++                + IL  L
Sbjct: 497  KPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  +       + ++G  VG+    + E+++  LR+L+      VS  S
Sbjct: 546  EEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEVS 602

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
            +I D  E      +  G      L     K +   R+I    E   N            +
Sbjct: 603  MIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVV 662

Query: 599  ELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656
            E I   E+  V + +   D  + G       TH EIHP+ +L V A++ P+ DHNQSPRN
Sbjct: 663  EYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRN 722

Query: 657  MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
             YQ  M KQ MG  +     R D   + L  PQ P+V T +       E P G N+IVA+
Sbjct: 723  TYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAI 782

Query: 717  LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA---- 772
             +YTGY+ ED++I+N+S+VDRG      Y++     S  G   D+ +   +  ++     
Sbjct: 783  ASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKG--YDQEEVFEKPTRETCQGM 840

Query: 773  -KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGSE 817
              +++  +D DGL   G  +   +       ++ +       TN R          + SE
Sbjct: 841  RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRFTKRDCSTFLRTSE 900

Query: 818  SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
            +  VD V V +       +   IR R  R P IGDKF+SRHGQKG C   +   DMPF+ 
Sbjct: 901  TGIVDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT- 957

Query: 878  VTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDE 937
              G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF ++V           
Sbjct: 958  CEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVN---------- 1007

Query: 938  SKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRS 997
                V ++  +L   G++  G EVLY+G  G ++T +IFIGP YYQRL+HMV DK   R+
Sbjct: 1008 ----VQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRA 1063

Query: 998  TGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCG 1057
             G +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +RL   SD +   VC+LCG
Sbjct: 1064 RGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCG 1123

Query: 1058 SVLTA-TFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAA 1116
             +  A T  H  +                   C  C+    +  V MPY  + L  EL +
Sbjct: 1124 IMAIANTRTHTYE-------------------CRGCRNKTQISLVRMPYACKLLFQELMS 1164

Query: 1117 MNI 1119
            M+I
Sbjct: 1165 MSI 1167


>gi|428184687|gb|EKX53541.1| hypothetical protein GUITHDRAFT_64211 [Guillardia theta CCMP2712]
          Length = 1155

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 329/1149 (28%), Positives = 523/1149 (45%), Gaps = 153/1149 (13%)

Query: 27   LDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN-----FGQFPVMLKTR 81
            ++EG++     CR   ++Y  +++ D+E+    AG    +ER        G+ P+ML+  
Sbjct: 111  VNEGITP--QQCRLRDMTYYAQILVDIEYTRDQAGGGGKKERVRKDNHPIGRMPIMLRCS 168

Query: 82   RCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREG 141
             C L G    ++ ++ E   + GGYF++ G E+V   +++ +Q   +S  R       +G
Sbjct: 169  HCVLNGKSETEMSAMGECPLDPGGYFVVRGTEKV---ILIQEQ---LSKNRIIIERDAKG 222

Query: 142  YTDKAVVIRCVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--LPVGIVLKALVDTND 198
                +V     + K ++++T+K     NG     F L+   +   +P+ I LKA+  T+D
Sbjct: 223  QPSASVTSSTAKTKTKTNITIK-----NGR----FQLKHNSFTDSIPIVIALKAMGLTSD 273

Query: 199  LEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV 258
             EI                  VGS  +      + A ++  +   R Q L +IG   +P 
Sbjct: 274  QEIIQ---------------LVGSEALF--ADDLAASLEVCATEIRPQALDYIGNKIKPT 316

Query: 259  IDGLQSESYYAVAE-----TVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNP 313
                + +S  A        TV+  ++ V   D   K   +  ML+++   +   +V D+ 
Sbjct: 317  KFARRQQSTKAEEAREKLATVVVSHVPVVKYDFRAKAIYICLMLRRIIQAMHDETVMDDK 376

Query: 314  DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKN 373
            D   N+ + L G  +++  ++  + +    +K+ Q ++E   +   F        V++  
Sbjct: 377  DYYGNKRLELAGQTMSLLFEDVFKSFNSDVQKIAQKQLEKPSRTTTF-------DVLKYL 429

Query: 374  PSKQIGTSIETMLKTGRLATQT-GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAG 432
            P  +I +++   + TG    +  G+   +R G T    RL+++  +     V   + F  
Sbjct: 430  PPTKITSALVNAISTGNWNLRRFGM---ERQGVTQVLSRLSYIAALGMITRVQ--SQFEK 484

Query: 433  LRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS 491
             R  S  R L P  WG LCP  TP+GE CGL+ +++    V +         D  ++   
Sbjct: 485  TRKVSGPRALQPSQWGMLCPADTPEGESCGLVKNLSLMTHVTT---------DDDELPIE 535

Query: 492  ILRVLIGVGMIPSLPKLVKSGPPAVLS----VLLDGRVVGV--IPSSEIEKVVAHLRRLK 545
            +L   +GV  +  L     SG  A L     V L+G ++G+   P + ++ + A  RR +
Sbjct: 536  LLCYDLGVEDLGIL-----SGEEATLGNVYLVFLNGLLLGLHRAPKNFVQLLRAMRRRGR 590

Query: 546  VSAASVIPDDLEVGYVPLSLGGAY---PGLYL-----FTSPPKFVRPVRNISLPSE--ES 595
            +     I  +     V +S  G     P + +     F +       + N    S+  + 
Sbjct: 591  LGEFVSIYSNARQRTVHISCDGGRVCRPLIIVKNGRSFVTDQHIKEVLSNCRTFSDFLKE 650

Query: 596  QNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPR 655
              IE +   E+    I   + G G +      TH EI P  ++   A L P   HNQSPR
Sbjct: 651  GLIEYLDVNEENDSLIALYEHGIGPK-----TTHLEIDPLTVMGACAGLIPNPHHNQSPR 705

Query: 656  NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
            N YQC M KQ +G        R D  LY L  PQ P+ +T T         P G NA VA
Sbjct: 706  NTYQCAMGKQAIGAIAYNQLQRIDTLLYLLVYPQRPLAQTKTIEFINFHRIPAGQNATVA 765

Query: 716  VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DRGQKLFRRNKDAKS 774
            V++YTGYD+EDA++LN+S+VDRG     + +  T  L    N   DR         +  +
Sbjct: 766  VMSYTGYDIEDAVVLNRSAVDRGFGRTIVLKKSTTSLKRYSNAAEDRITYPQSGGNERLA 825

Query: 775  LHSV-IDSDGLPYVGQMIHPGEPYC--------SIYDKTTNSWRTNSRKGSESVF----- 820
            L +  +D DG+  VG  +  G+           S      +  R ++ K +  V+     
Sbjct: 826  LRTANLDRDGIVGVGSKVSQGQILVNKMVPKDISTVINNPDELREDAFKSAPLVYKDKAD 885

Query: 821  --VDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGV 878
              VD V +   + ++   K  +  R TR P +GDKFSSRHGQKGV   + P  DMPF+  
Sbjct: 886  GYVDQVLLTSNHDEHFLVK--VLMRTTRRPELGDKFSSRHGQKGVTGIIIPQEDMPFTE- 942

Query: 879  TGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDES 938
             G+ PDLI+NPH FPSRMT+  LLE +  K   ++GKF DAT FA++             
Sbjct: 943  EGLCPDLIMNPHGFPSRMTVGKLLEMLGGKAALMNGKFADATAFASTA------------ 990

Query: 939  KSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRST 998
             S V  + + L   G+++ G E+L SG+ G  +   IF GP+YYQ+L+HMV DK   R  
Sbjct: 991  -SSVQAISDTLVLHGYHFGGKELLTSGITGEPVPAYIFFGPIYYQKLKHMVQDKMHARHK 1049

Query: 999  GTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGS 1058
            G    +TRQP +GR + GG+R GEMERD L+++G++ LL +RL   SD     VC  CG 
Sbjct: 1050 GPRTVLTRQPTEGRSKDGGLRLGEMERDCLVSYGSSALLLERLMISSDEFQCHVCKKCGL 1109

Query: 1059 VLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMN 1118
            +                 G P         C  C+T+  M  + MPY  + +  EL +MN
Sbjct: 1110 I-----------------GYPGW-------CQNCKTNLHMSMIQMPYACKLVFHELQSMN 1145

Query: 1119 IKITLQLGD 1127
            I   L+L D
Sbjct: 1146 IVPRLRLED 1154


>gi|308497698|ref|XP_003111036.1| hypothetical protein CRE_04747 [Caenorhabditis remanei]
 gi|308242916|gb|EFO86868.1| hypothetical protein CRE_04747 [Caenorhabditis remanei]
          Length = 1154

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 331/1167 (28%), Positives = 527/1167 (45%), Gaps = 174/1167 (14%)

Query: 28   DEGLSEMFD-----HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRR 82
            +EGL+   D      CR   ++Y+  +  D+E  Y      V ++    G+ P+ML++ +
Sbjct: 90   EEGLNMTHDKITPQECRLRDMTYSAPISVDIE--YTRGNQRVFKKDLIIGRMPIMLRSSK 147

Query: 83   CHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGY 142
            C L+    ++L  ++E   + GGYF++ G E+V    IL ++    + +    R+  +  
Sbjct: 148  CILRDLAEEELARVQECPYDPGGYFVVKGSEKV----ILIQEQLSKNRIMVG-RNSSKEL 202

Query: 143  TDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIF 202
              + +     RK ++ VT+K       SVR           +PV I+ KA+   +D +I 
Sbjct: 203  QCEVLSSTSERKSKTYVTMKKGKY---SVRHNQLTDD----VPVSIIFKAMGVESDYDIV 255

Query: 203  NHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHI-----GEHFQP 257
            +  T  ++EKY           VS   +  L E  +  + T+ Q L ++        F P
Sbjct: 256  S--TIGHEEKY-----------VSAFAQT-LEECINAGVYTQQQALAYVTSKVKARKFTP 301

Query: 258  VIDGLQSESYYAV-------AETVIRDYIFVHLNDNNDKFNL----LIFMLQKLFSLVDH 306
                L   S   +       A   + + +  H+   +  F +    L  M ++L      
Sbjct: 302  -FGSLPGTSVSVLTPPKEHEAVDFLSNSMITHIACPDGNFKMKAIYLGLMTRRLIQTELG 360

Query: 307  TSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANI 366
             +  D+ D   N+ + L G L+ +  ++  + +  + K+     I +N          +I
Sbjct: 361  ENELDDRDFYGNKRLELAGSLLALLFEDVFKRFNSELKR-----IADNALMKTMAAPLDI 415

Query: 367  KKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHR 426
             K M ++    I  +I   + TG    +      +R G T    RL+++  +     ++ 
Sbjct: 416  VKHMRQD---MITNTIVNAMSTGNWIIKRFR--MERLGVTQVLSRLSYISALGMMTRIN- 469

Query: 427  GASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDF 485
             ++F   R  S  R L P  WG LCP  TP+GE CGL+ ++     + +  D +      
Sbjct: 470  -STFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALISHITTDSDEK------ 522

Query: 486  SKMRTSILRVLIGVGMIPSLPKLVKS--GPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRR 543
                  +LR+L+  G +  L  +  S    P    + L+G ++G   + + E+VV  +R 
Sbjct: 523  -----PVLRLLLNSG-VEDLHNVHFSHVNKPENTLIFLNGVLIGT--AVDPERVVRAVRD 574

Query: 544  LKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP---VRNISLPSEESQNIEL 600
            L+ S        L   +V +S       +++ +   +  RP   V+N   P     +++ 
Sbjct: 575  LRRSG-------LLSEFVSVSRSITNRSVFISSDGGRLCRPYIIVKN-GKPMLTQDHVQQ 626

Query: 601  IGPFEQVFMEIRCPDGG-----DGGRRN-AFPA----------THEEIHPTGMLSVVANL 644
            +   +++F +    D G     D    N A  A          TH EI P  +L V A L
Sbjct: 627  LKEGKRIFEDF--VDDGIVEYLDVNEMNDALIAVYEKEIGPETTHLEIEPFTLLGVCAGL 684

Query: 645  TPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGID 704
             PY  HNQSPRN YQC M KQ MG      + R D  +Y L  PQ P+V++ T      +
Sbjct: 685  IPYPHHNQSPRNTYQCAMGKQAMGTIAYNQQKRIDSIMYLLCYPQRPLVKSKTIELTNFE 744

Query: 705  EYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR-- 761
            + P G N I+AV++Y+GYD+EDA++LNK+S+DRG     +Y+     +    N+  DR  
Sbjct: 745  KLPAGANGIIAVMSYSGYDIEDALVLNKASLDRGYGRCLVYKHVKGTVRKYPNQTFDRLL 804

Query: 762  GQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGE-------PYCSIYDKTTNSWRTNSRK 814
            G  L    +   S H  +D +G+ + G  I P +       P  S       S   N+  
Sbjct: 805  GPALDPNTRLPISKHKNLDQEGIVFAGARILPKQTIINKHMPVVSGESGPGPSASANT-I 863

Query: 815  GSESVFVDYVAVDMKNSKNLPQKA---------------NIRFRHTRNPIIGDKFSSRHG 859
            G     VDY  V +      P  A                +  R TR P +GDKFSSRHG
Sbjct: 864  GIAGRQVDYKDVSISYKTPTPSYAERVLLTYNEDEAHLIKVLLRQTRRPELGDKFSSRHG 923

Query: 860  QKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDA 919
            QKGVC  +    DMPF+ + GM PD+I+NPH +PSRMT+  L+E ++ K G ++G +   
Sbjct: 924  QKGVCGLIAQQEDMPFNDL-GMVPDMIMNPHGYPSRMTVGKLMELLSGKAGVMNGTYHYG 982

Query: 920  TPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGP 979
            T F           G D+ K + +EL       G+NY G ++L SG+ G  L+  I+ GP
Sbjct: 983  TAF-----------GGDQVKDVCEELAAR----GYNYMGKDMLTSGITGQSLSAYIYFGP 1027

Query: 980  VYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHD 1039
            +YYQ+L+HMV DK   R+ G    +TRQP +GR R GG+R GEMERD L+A+GA+ LL +
Sbjct: 1028 IYYQKLKHMVLDKMHARARGPRAALTRQPTEGRSREGGLRLGEMERDCLIAYGASMLLIE 1087

Query: 1040 RLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGME 1099
            RL   SD    DVC+ CG + +  +                        C  C++SK M 
Sbjct: 1088 RLMVSSDEFKVDVCTGCGVIGSKGW------------------------CQKCRSSKSMA 1123

Query: 1100 TVAMPYVFRYLAAELAAMNIKITLQLG 1126
             + +PY  + L  EL +MNI   L L 
Sbjct: 1124 NIKIPYACKLLFQELQSMNIVPRLDLA 1150


>gi|156372267|ref|XP_001628960.1| predicted protein [Nematostella vectensis]
 gi|156215949|gb|EDO36897.1| predicted protein [Nematostella vectensis]
          Length = 1182

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 325/1150 (28%), Positives = 517/1150 (44%), Gaps = 139/1150 (12%)

Query: 34   MFDHCRQAKISYTGKLMADV-EFQYLDAGSPVV--RERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+     D+ + +  D   P V    +   G+ P+ML++  C L G   
Sbjct: 113  MPNEARLRNLTYSAPFYVDITKTRIKDNEEPQVTTHSKMFIGKIPIMLRSTYCLLNGLLD 172

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  YT  A +  
Sbjct: 173  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSKKDSKYSYT--AEIRS 227

Query: 151  CVR-KDQSSVTLKLYYLLNGSV---------RLGFWLQGKEYLLPVGIVLKALVDTNDLE 200
            C+    + + T+ +  L  GS          R+   L   +  +P+ IV +AL    D +
Sbjct: 228  CLEHSSRPTSTMWVSMLAKGSSGGRRSAIGQRIVGSLPYIKQEIPIMIVFRALGFVADRD 287

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   ++++            + E VK  L E     +  +   L  IG   +    
Sbjct: 288  ILEHIIYDFEDQE-----------MMEMVKPSLDEA--FVIQEQNVALNFIGS--RGARP 332

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     A+ +++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 333  GVTKERRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 392

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +    + +++ +   Q  I + GK F      NI+  ++    K
Sbjct: 393  GNKRLDLAGPLLAFLFRGLFRNLMKEVRMYAQKFI-DRGKDF------NIELALK---PK 442

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   +   L TG    Q     Q RAG +    RL F   +S  R ++      G +  
Sbjct: 443  VITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGREG-KLA 500

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G   GL+ ++     + S       I +F +  T      
Sbjct: 501  KPRQLHNTHWGMICPAETPEGHAVGLVKNLALMAYI-SVGSQPSPILEFMEEWT------ 553

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                 + +L ++  S       + ++G  VG+    + +++++ LR+L+      VS  S
Sbjct: 554  -----MENLEEITPSAINTSTKIFVNGCWVGI--HRDPDQLMSTLRKLRRRMDIIVSEVS 606

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
            ++ D  E      S  G      L     K +    +I    E   N            +
Sbjct: 607  MVRDFREREIRIYSDAGRICRPLLIVENQKLLLKKNHIDQLKEREYNEYSWQELVANGIV 666

Query: 599  ELIG-PFEQVFMEIRCPDG-GDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656
            E I    E+  M    PD   + G+      TH EIHP+ +L V A++ P+ DHNQSPRN
Sbjct: 667  EYIDVNEEETVMVAMTPDELVEKGQAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRN 726

Query: 657  MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
             YQ  M KQ MG  +     R D   + L  PQ P+V T +       E P G NAIVA+
Sbjct: 727  TYQSAMGKQAMGVYITNYHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINAIVAI 786

Query: 717  LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA---- 772
             +YTGY+ ED++I+N S++DRG+     Y++     S  G  +D+ +   +  +DA    
Sbjct: 787  ASYTGYNQEDSVIMNASAIDRGLYRSVFYRSYRDQESKKG--LDQEETFEKPTRDAVQGM 844

Query: 773  -KSLHSVIDSDGLPYVGQMIHPGEPYCSIY-------DKTTNSWRTNSRKG-------SE 817
              + +  +D DGL   G  +   +             D+   + R  S+K        SE
Sbjct: 845  RNASYDKLDEDGLIAPGIRVSGDDVIVGKTVTLPDNDDELEGTARKYSKKDASTFLRPSE 904

Query: 818  SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
            +  VD V V + N +   +   I+ R  R P IGDKF+SRHGQKG C   +   DMPF+ 
Sbjct: 905  TGIVDQVMVTI-NQEGF-KFTKIKVRSVRVPQIGDKFASRHGQKGTCGITYRQEDMPFT- 961

Query: 878  VTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDE 937
              G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF ++V           
Sbjct: 962  CEGLSPDVIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVN---------- 1011

Query: 938  SKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRS 997
                V ++ ++L   G++  G EVLYSG  G +L  ++F+GP YYQRL+HMV DK   R+
Sbjct: 1012 ----VQKISQLLNDYGYHLRGNEVLYSGFTGRKLNTQVFLGPTYYQRLKHMVDDKIHSRA 1067

Query: 998  TGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCG 1057
             G +  +TRQP++GR R GG+RFGEMERD ++AHG+A  L++RL   SD +   VC+LCG
Sbjct: 1068 RGPLQILTRQPMEGRSRDGGLRFGEMERDCMIAHGSAQFLNERLFEVSDPYSCHVCNLCG 1127

Query: 1058 SVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAM 1117
             +  A   +                      C  C+    +  + MPY  + L  EL +M
Sbjct: 1128 LIAIANLRN------------------NTFECRGCKNKTQVSRIRMPYAAKLLFQELMSM 1169

Query: 1118 NIKITLQLGD 1127
            +I   + + D
Sbjct: 1170 SIAPRMMVCD 1179


>gi|367054822|ref|XP_003657789.1| hypothetical protein THITE_2123824 [Thielavia terrestris NRRL 8126]
 gi|347005055|gb|AEO71453.1| hypothetical protein THITE_2123824 [Thielavia terrestris NRRL 8126]
          Length = 1048

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 318/1153 (27%), Positives = 513/1153 (44%), Gaps = 176/1153 (15%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR   ++Y   ++ D+   Y      ++R      + PVMLK+ +C L GA + ++  + 
Sbjct: 3    CRLRDMTYAAPVVVDIA--YSRDRKKIIRRDIPLCRIPVMLKSAKCCLSGATNAQMEIMN 60

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            E   + GGYFI+NG E+V   +++ +Q     ++  +  D + G +         RK ++
Sbjct: 61   ECPLDPGGYFIINGTEKV---ILIQEQLSKNRVIVEA--DDKGGVSASVTSSTHERKSKT 115

Query: 158  SVTLKLYYL-LNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
             V LK   + LN +V +          +P+ IVLKAL   +D EI   L    D +Y+ +
Sbjct: 116  YVILKKDRIALNHNVLV--------EPIPIVIVLKALGGLSDYEIM-ELVAGGDARYQDD 166

Query: 217  KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ----------------PVID 260
                          I   E     + T+ Q L++IG   +                PV +
Sbjct: 167  ------------FLINFDEATKAGVYTQQQALEYIGVRVKMGGPKKGRPGTAPRRSPVEE 214

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQE 320
            GL + +   +A   I D  F        K   +  M++++     +  + D+ D + N+ 
Sbjct: 215  GLDALANIIIAHVTIEDLDFY------PKAIYIAMMVRRVLMAAHNPKLVDDRDFVGNKR 268

Query: 321  ILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGT 380
            + L G L+++  ++  + ++   K          G    FF   N  +    +P   I T
Sbjct: 269  LELAGQLLSLLFEDLFKMFVASLK----------GNMEYFFKKPN--RTSAYDPVGPIST 316

Query: 381  SIETMLKTGRLATQTG-LDLQQ----RAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
              +++ +    A Q+G  ++++    RAG T    RL+++  +     +   + F   R 
Sbjct: 317  QGQSITQGLNRAIQSGNWNVKRFNMNRAGVTHVLSRLSYIAVVGMMTRI--SSQFEKTRK 374

Query: 436  TS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILR 494
             S  R L P  WG LCP  TP+GE CGL+ ++     + +  + +        +R  I  
Sbjct: 375  VSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTNAEEQ-------PVRNWIFG 427

Query: 495  VLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVI--PSSEIEKVVAHLRRLKVSAASVI 552
            ++ GV  I       +   P    + L+G    +   P     +     RR  +S     
Sbjct: 428  LIEGVQPIRMFTG-TEMHKPGTYIIHLNGTPFALTRHPKQFAARFKTMRRRGHISP---- 482

Query: 553  PDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNI-----SLPSEESQNIELIGPFEQV 607
                   +V + +   +  +++ T   +  RP   +      L  E  + ++L     + 
Sbjct: 483  -------FVSIHINEHFSAIHIATDEGRICRPYIIVKDGKSKLKPEHLRLLQLGKATFED 535

Query: 608  FMEIRCPDGGDGGRRN-AFPATHE----------EIHPTGMLSVVANLTPYSDHNQSPRN 656
            F++    +  D    N A  A  E          EI P  +L  VA L P+  HNQSPRN
Sbjct: 536  FLKRGVIEYLDVNEENDALIAISEDDINQSTTHLEIEPFTILGAVAGLIPFPHHNQSPRN 595

Query: 657  MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
             YQC M KQ +G        R D  LY L  PQ P+V T T      D+ P G NA V V
Sbjct: 596  TYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMVITKTIQLIHYDKLPAGQNATVVV 655

Query: 717  LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSL- 775
            ++Y+GYD+EDA++LNK+S DRG    Q+++    +L    N         +++++ +++ 
Sbjct: 656  MSYSGYDIEDALVLNKASCDRGFGRCQVFRKYAAELLQYPNGRKDRLGGIQKDEEGRTIA 715

Query: 776  -HSVIDSDGLPYVGQMIHPGEPYC---SIYDKTTNSWRTNSRKGSES------------- 818
             H+ +D DGL  VG  +H GE      +  D+T+      S +GS+              
Sbjct: 716  KHACLDKDGLAIVGYRVHSGETMIMKETPIDQTSTG--IGSDRGSDDFRPAPVNYRTPDP 773

Query: 819  VFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGV 878
             ++D V V   N++       ++ R TR P +GDKFSSRHGQKGV   +    DMPFS  
Sbjct: 774  AYIDKVMV--SNTEKDTAIIKVQTRQTRRPELGDKFSSRHGQKGVVGIIVDQEDMPFSD- 830

Query: 879  TGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGK----FMDATPFANSVKKTNGDTG 934
            +G+ PD+I+NPH FPSRMT+  L E +  K   + G+    F DA               
Sbjct: 831  SGVVPDIIMNPHGFPSRMTVGKLFECLTGKAAVVAGRRDYGFGDAF-------------- 876

Query: 935  TDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQ 994
                   V+E+G +L   GF++ G +   SG+ G      +F GP+YYQRL+HMV DK  
Sbjct: 877  ---RSHPVEEMGRVLVEHGFSWEGKDYFTSGITGDPHEAYLFNGPIYYQRLKHMVQDKMH 933

Query: 995  VRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCS 1054
             RS+G    +TRQP +GR R GG+R GEMERD L+A+GA+ LL +RL   SD    D+C 
Sbjct: 934  SRSSGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLMYSSDATRVDICE 993

Query: 1055 LCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAEL 1114
             CG +    +                        C  C+++  +  + MPY  + L  EL
Sbjct: 994  WCGLLGYKGY------------------------CQTCKSTSQVTQMTMPYAAKLLVQEL 1029

Query: 1115 AAMNIKITLQLGD 1127
             +MN+ + ++L D
Sbjct: 1030 ISMNVGVRIELED 1042


>gi|118358942|ref|XP_001012712.1| DNA-directed RNA polymerase, beta subunit family protein [Tetrahymena
            thermophila]
 gi|89294479|gb|EAR92467.1| DNA-directed RNA polymerase, beta subunit family protein [Tetrahymena
            thermophila SB210]
          Length = 1141

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 346/1244 (27%), Positives = 535/1244 (43%), Gaps = 234/1244 (18%)

Query: 6    SADFEPLRE-------------LVRHHIESFDYMLDEGLSEMF----------------- 35
            S   EPLRE              V HHI+SF+Y ++  L ++                  
Sbjct: 3    SKTAEPLREKTRIIDSYLAHNGFVSHHIQSFNYFINIKLQQIITSSMNKELRLDTDNSFL 62

Query: 36   ---------------------DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQF 74
                                    R +  SY G +  D E  +       +R + N G+ 
Sbjct: 63   LEYTKIYIEPPAHDNKTMMLPQEARLSNSSYAGNIYVDCELTFNGKKEDSLR-KVNIGKM 121

Query: 75   PVMLKTRRCHL-QGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRS 133
            P+ML +  C+L +  +  ++  L+E A +  GYFI+ G+E+VF             +++ 
Sbjct: 122  PIMLGSSHCNLIKALELGQVHKLQECANDPRGYFIIKGVEKVF-------------LIQE 168

Query: 134  SFRDRR---EGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVL 190
               D R   E   +K +V     K  +  T  +  L+  + ++   +      +P+ I  
Sbjct: 169  QLADNRIFIEEDKNKELVANV--KSNTVDTKSITSLIIKNHKIYVKVSSFSKPIPLLIFF 226

Query: 191  KALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQH 250
            KA    ++ EIF  +     E++           +  R+ + L +++   + T+ Q L++
Sbjct: 227  KAYGVESEQEIFQLIGT---EEH-----------LLNRLALCLEDIEQSQVYTQQQALEY 272

Query: 251  IGEHFQPVIDGLQSESYYA-----VAETVIRDYIFVHLNDNNDKFN----LLIFMLQKLF 301
            + +  +P     Q + Y +      A  +I + +  H+   N  +      L  M ++L 
Sbjct: 273  LSKRLRP--KTFQDKKYSSRNPVDEARDIITNVVLCHIPCKNYNYYPRAIFLGLMARRLI 330

Query: 302  SLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFF 361
              +D  S  D  D   N+ +   G  + +  ++K + +    +K +  EIE +       
Sbjct: 331  EALDDPSKIDKRDYYGNKRMKCAGWYLELLFEDKFKQFNMMVRKELSKEIEKH------- 383

Query: 362  NLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAG-YTVQAERLN------F 414
                      KN S  I   +E++L+        GL+     G +T++  R++       
Sbjct: 384  ----------KNKSYPIKNRVESILEKNHDIITQGLNNAISTGNWTIKRFRMDTVGVTQV 433

Query: 415  LRFISFFRAV----HRGASFAGLRT-TSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTST 469
            L  IS+  A+       + F   R  T  R LL   WG +CP  TPDGE CGL  +++  
Sbjct: 434  LARISYIAAIGMMTRMNSQFKKSRKLTGPRSLLGSHWGLVCPADTPDGESCGLTKNLSLM 493

Query: 470  CRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGP---PAVLSVLLDGRVV 526
              +    + + N+        S + + +G+  I        SG         V L+G+++
Sbjct: 494  AHIT--IEEKKNV-------LSTIALNLGMEDIGHYS----SGEIHEDKNYMVFLNGQII 540

Query: 527  GV--IPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLG-GAYPGLYLFTSPPKFVR 583
            G+   P +  +K+    RR K+     I  + E   V L    G    L +     K + 
Sbjct: 541  GMHRDPEAFAQKLRFMRRRGKIGTTISISTNSEKRAVYLDTDDGRLCRLLIVVENGKPLI 600

Query: 584  PVRNISLPSEESQN---------IELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEI 632
               +++   E+ ++         IE I   E+   ++ I+  D       N    TH EI
Sbjct: 601  TNDHLNDLKEKRKSYLDLIRMGLIEYIDVNEEDNCYIAIKQED-----IPNRSKTTHMEI 655

Query: 633  HPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPI 692
             P  +L VV+ L PY  HNQ+ RN +QC M KQ +G        R D  LY L  PQTP+
Sbjct: 656  DPLTLLGVVSGLVPYPHHNQASRNTFQCAMGKQALGIIGSTSMNRVDTILYQLIYPQTPL 715

Query: 693  VRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI---YQTET 749
            ++T      G D++P G NA +AVL+Y+GYD+EDA +LNKSS+DRG     +   Y+TE 
Sbjct: 716  LKTKVIEYAGYDKFPAGHNASIAVLSYSGYDIEDATVLNKSSLDRGFGRTMVFKKYETEI 775

Query: 750  IDLSDDG--------NKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIY 801
              L   G         K   G    ++N+  K     +D DG P VG  I+ G+    ++
Sbjct: 776  QKLKMSGLTELLRGPPKEAEGSYKKKQNRVLKKF-GALDDDGTPIVGASINNGD---VLF 831

Query: 802  DKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRF------------------R 843
            +K T       ++G + +  + V+  + N      K   R                   R
Sbjct: 832  NKYTPLLTLEQQRGRDILNNNSVSEYIHNPTTFKGKKLARIDRVIRSQQDGNVIIKTIVR 891

Query: 844  HTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLE 903
             TR P  GDKFSSRHGQKG+   +    DMPFS   G  PDLI+NPH +PSRMT+  LLE
Sbjct: 892  ETRRPEYGDKFSSRHGQKGIIGLIVNQEDMPFSE-KGWVPDLIMNPHGYPSRMTVGKLLE 950

Query: 904  SVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLY 963
             + +K   L G+F   T F        GD   D S  LV          GF+Y G +V+ 
Sbjct: 951  LLGSKAAVLSGQFKYGTAFG-------GDKMADLSSILVQN--------GFSYTGKDVII 995

Query: 964  SGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEM 1023
            SG+ G  + C +F GPV+YQRL+HMV+DK   R+ G +  +TRQP +GR + GG+R GEM
Sbjct: 996  SGITGEYMQCYVFCGPVFYQRLKHMVADKVHARAKGRVTTLTRQPTEGRAKDGGLRLGEM 1055

Query: 1024 ERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARA 1083
            ERDSLLA  ++ LL +RL   SD     VC  CG      FI                  
Sbjct: 1056 ERDSLLAFASSNLLIERLMISSDKFSVQVCEKCG------FIQHTN-------------- 1095

Query: 1084 PKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
                +C  CQT + +  V MPY  + L  EL +MNIK  L L D
Sbjct: 1096 ----SCKMCQTDQ-VSKVVMPYACKLLFQELLSMNIKPKLNLVD 1134


>gi|302676710|ref|XP_003028038.1| hypothetical protein SCHCODRAFT_83253 [Schizophyllum commune H4-8]
 gi|300101726|gb|EFI93135.1| hypothetical protein SCHCODRAFT_83253 [Schizophyllum commune H4-8]
          Length = 1142

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 328/1145 (28%), Positives = 512/1145 (44%), Gaps = 164/1145 (14%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
             CR   I+Y+  +   V FQY   G  +V+ R   G+ P+ML++ +C L G    +L  +
Sbjct: 109  ECRLRDITYSAPIT--VTFQYT-RGRSIVQRRQTIGRLPIMLRSNKCVLTGRTEAQLARM 165

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
             E   + GGYF++ G E+V   +++ +Q     ++  +  D  +G    +    C     
Sbjct: 166  TECPLDPGGYFVVKGTEKV---ILVQEQLSKNRIIVET--DPVKGIVQAS----CTSSTH 216

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYL--------LPVGIVLKALVDTNDLEIFNHLTCC 208
              V  K Y +           +G+ YL        +P+ I LK L   +D EI   LT  
Sbjct: 217  GGVKSKAYVVTK---------KGRIYLRHNSIHEDVPIVIALKGLGIQSDKEIM-LLTAG 266

Query: 209  YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ----PVIDGLQS 264
              E YK    A             L +   + + T+ Q L+ +G   +    P+  G + 
Sbjct: 267  NTEAYKIAFSAN------------LEDAAKMGVFTQQQALEWLGARVRVNRRPM--GPRR 312

Query: 265  ESYYAVAETVIRD---YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEI 321
             +Y    E +      ++ +   D   K   +  M +++   +    + D+ D + N+ +
Sbjct: 313  PAYEEALEALATLLLAHVRMDGLDFRPKAIFVATMTRRVLMAMHDEKMVDDRDYVGNKRL 372

Query: 322  LLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGK--KFDFFNLANIKKVMEKNPSKQIG 379
             L G L+ +  ++  + +    K  I   ++   +  +FD +N    +          I 
Sbjct: 373  ELAGQLLALLFEDLFKTYCSNLKAAIDKVLKKPSRTTEFDAYNTMMFQ-------GDHIT 425

Query: 380  TSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-V 438
                  + TG  + +      +RAG T    RL+F+  +     +   + F   R  S  
Sbjct: 426  AGFVRAISTGNWSLKRFR--MERAGVTHVLSRLSFISALGMMTRI--SSQFEKTRKVSGP 481

Query: 439  RKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIG 498
            R L P  WG LCP  TP+GE CGL+ ++     + +  D    IR         L  L+G
Sbjct: 482  RALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVDEEPIIR---------LAYLLG 532

Query: 499  VGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEV 558
            V  I         G  A + V ++G ++G+  +    + V + R+++   A  I +    
Sbjct: 533  VEDIALASGSEIYGTHAFI-VSVNGNIIGL--TKYPARFVTNFRKMR--RARRISE---- 583

Query: 559  GYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEE--SQNIELI----GPFEQVFMEIR 612
             +V + +   +  + + T   +  RP+  +        S++I L+      F+  F+   
Sbjct: 584  -FVSIYINHHHRTVQIATDGGRICRPMIIVEKGRSRVHSEHIALLKKGAATFDD-FLRKG 641

Query: 613  CPDGGDGGRRN-AFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQ 661
              +  D    N A+ A          TH EI P  +L  VA L PY  HNQSPRN YQC 
Sbjct: 642  LVEYLDVNEENDAYIALYEADIVPTTTHLEIEPFTLLGAVAGLIPYPHHNQSPRNTYQCA 701

Query: 662  MAKQTMGFSVQALKF----RADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVL 717
            M KQ +G    A+ F    R D  LY    PQ P+V+T T    G D+ P G NA VAV+
Sbjct: 702  MGKQAIG----AIGFNQLNRIDTLLYLSVYPQQPMVKTKTIELIGYDKLPAGQNATVAVM 757

Query: 718  AYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR-GQKLFRRNKDAKSL 775
            +Y+GYD+EDA+ILNK+S+DRG    Q+ +     +    N   DR        N +    
Sbjct: 758  SYSGYDIEDALILNKASLDRGYGRCQVLRKNATLVRKYPNGTYDRLADAPVDENGNIAKK 817

Query: 776  HSVIDSDGLPYVGQMIHPGEPYC---SIYDKTTNSWRTNSR----KGSESVFVDYVA--- 825
            + +I +DGL  VG+ + PG+ Y    S  + T N++   +     K +   +   VA   
Sbjct: 818  YDIIQADGLAGVGERVDPGDVYVNKQSPTNATDNTFNGQAAAVPYKNTPLTYKSPVAGNI 877

Query: 826  --VDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRP 883
              V + +++N      +  R TR P +GDKFSSRHGQKGVC  +    DMPF+   G+ P
Sbjct: 878  DKVLISDTENDQLLVKVLIRQTRRPELGDKFSSRHGQKGVCGLIVNQEDMPFND-QGINP 936

Query: 884  DLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVD 943
            D I+NPH FPSRMT+  ++E +A K G L GK    T F  S                V+
Sbjct: 937  DTIMNPHGFPSRMTVGKMIELLAGKAGVLTGKLQYGTAFGGSK---------------VE 981

Query: 944  ELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQ 1003
            ++  +L   GF+Y G ++L SG+ G  +   ++ GP+YYQ+L+HMV DK   R+ G    
Sbjct: 982  DMSRILIENGFSYAGKDMLTSGITGEPMEAYVYFGPIYYQKLKHMVMDKMHARARGPRAT 1041

Query: 1004 ITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTAT 1063
            +TRQP +GR R GG+R GEMERD L+ +GA  LL +RL   SD    D C  CG +    
Sbjct: 1042 LTRQPTEGRSREGGLRLGEMERDCLIGYGATQLLLERLMISSDKFEVDACQECGLMGYNG 1101

Query: 1064 FIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITL 1123
            +                        C  C++SK M  + +PY  + L  EL AMN+   L
Sbjct: 1102 W------------------------CTYCKSSKKMAQLTIPYAAKLLFQELMAMNVVPRL 1137

Query: 1124 QLGDG 1128
             L D 
Sbjct: 1138 VLDDA 1142


>gi|324120658|dbj|BAJ78720.1| RNA polymerase II second largest subunit [Neocolochelyna itoi]
          Length = 1175

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 326/1142 (28%), Positives = 511/1142 (44%), Gaps = 138/1142 (12%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYL-DAGSPV--VRERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    + DA  PV    ++   G+ P+ML++  C L G   
Sbjct: 109  MPNEARLRNLTYSAPLYVDITKTIVKDAEDPVETQHQKTFIGKIPIMLRSTYCLLSGLTD 168

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  Y  KA +  
Sbjct: 169  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKYAY--KAEIRS 223

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  +      +     G+  +         +P+ IV +AL    D +
Sbjct: 224  CLEHSSRPTSTLWVNMMAKSGASIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 283

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEH-FQPVI 259
            I  H+   +D+           P + E VK  L E     +  +   L  IG    +P  
Sbjct: 284  ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGTRGARP-- 328

Query: 260  DGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
             G+  E     A  +++  +  H+  ++     K   L +M+ +L S        D+ D 
Sbjct: 329  -GVTKEKRIKYAREILQKEMLPHVGISDFCETKKAYFLGYMVHRLLSASLGRRELDDRDH 387

Query: 316  LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPS 375
              N+ + L G L+    +   ++ L K  +L   +  + GK F+   LA IK       +
Sbjct: 388  YGNKRLDLAGPLLAFLFRGLFKN-LMKEVRLYAQKFIDRGKDFNL-ELA-IK-------T 437

Query: 376  KQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
            K I   +   L TG    Q     Q RAG +    RL F   +S  R V+      G + 
Sbjct: 438  KIITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KL 495

Query: 436  TSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV 495
               R+L    WG LCP  TP+G   GL+ ++     ++                + IL  
Sbjct: 496  AKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEF 544

Query: 496  LIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAA 549
            L    M  +L ++  S       + ++G  VG+    + E+++A LR+L+      VS  
Sbjct: 545  LEEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVSEV 601

Query: 550  SVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEE------------SQN 597
            S+I D  +      +  G      L       +   R+I +  E             S  
Sbjct: 602  SMIRDIRDREIRIYTDAGRICRPLLIVEGQNLLLKKRHIDMLKERDYTNYGWQVLVASGV 661

Query: 598  IELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQSP 654
            +E I   E+   M    P+     +  A+  T  H EIHP  +L V A++ P+ DHNQSP
Sbjct: 662  VEYIDTLEEETVMIAMSPEDLRQEKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSP 721

Query: 655  RNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIV 714
            RN YQ  M KQ MG  +     R D   + L  P  P+V T +       E P G N+IV
Sbjct: 722  RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIV 781

Query: 715  AVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD-GNKVDRGQKLFRRNKDA- 772
            A+L YTGY+ ED++ILN S+V+RG      Y++     S   G++ ++ +K  R+     
Sbjct: 782  AILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKRIGDQEEQFEKPTRQTCQGM 841

Query: 773  -KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSR---KGSE 817
              +++  +D DG+             +G+ I   E    +   T    + ++    + SE
Sbjct: 842  RNAIYDKLDDDGIIAPGIRVSGDDVVIGKTITLPETDDELDSATKRFTKRDASTFLRNSE 901

Query: 818  SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
            +  VD V + + NS+   +   IR R  R P IGDKF+SRHGQKG C   +   DMPFS 
Sbjct: 902  TGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFS- 958

Query: 878  VTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDE 937
              G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF ++V           
Sbjct: 959  CEGLTPDIIINPHAIPSRMTIGHLIECIQGKVSANKGEIGDATPFNDAVN---------- 1008

Query: 938  SKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRS 997
                V ++  +L+  G+   G EV+Y+G  G ++  ++F+GP YYQRL+HMV DK   R+
Sbjct: 1009 ----VQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRA 1064

Query: 998  TGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCG 1057
             G +  + RQP++GR R GG+RFGEMERD  ++HGAA  L +RL   SD +   +C+ CG
Sbjct: 1065 RGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHICNFCG 1124

Query: 1058 SVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAM 1117
             +  A   +                      C  C+    +  + +PY  + L  EL AM
Sbjct: 1125 LIAIANLRN------------------NTFECKGCKNKTQISQIRLPYAAKLLFQELMAM 1166

Query: 1118 NI 1119
            NI
Sbjct: 1167 NI 1168


>gi|224049409|ref|XP_002192218.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Taeniopygia
            guttata]
          Length = 1174

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 325/1143 (28%), Positives = 512/1143 (44%), Gaps = 141/1143 (12%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   ++   ++   G+ P+ML++  C L G   
Sbjct: 109  MPNEARLRNLTYSAPLYVDITKTVIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 168

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   + +D +  YT +     
Sbjct: 169  RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGECR--S 223

Query: 151  CVRKD-QSSVTLKLYYLLNGSV---------RLGFWLQGKEYLLPVGIVLKALVDTNDLE 200
            C+    + + T+ +  L  G           R+   L   +  +P+ IV +AL   +D +
Sbjct: 224  CLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRD 283

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +++           P + E VK  L E     +  +   L  IG   +    
Sbjct: 284  ILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAKP 328

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     A+ V++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 329  GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   ++ L++ +   Q  I + GK F+   LA IK       ++
Sbjct: 389  GNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFI-DRGKDFNL-ELA-IK-------TR 438

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   ++  L TG    Q     Q RAG +    RL F   +S  R ++      G +  
Sbjct: 439  IISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLA 496

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G   GL+ ++     ++                + IL  L
Sbjct: 497  KPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  +       + ++G  VG+    + E+++  LR+L+      VS  S
Sbjct: 546  EEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEVS 602

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
            +I D  E      +  G      L     K +   R+I    E   N            +
Sbjct: 603  MIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVV 662

Query: 599  ELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656
            E I   E+  V + +   D  + G       TH EIHP+ +L V A++ P+ DHNQSPRN
Sbjct: 663  EYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRN 722

Query: 657  MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
             YQ  M KQ MG  +     R D   + L  PQ P+V T +       E P G N+IVA+
Sbjct: 723  TYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAI 782

Query: 717  LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA---- 772
             +YTGY+ ED++I+N+S+VDRG      Y++     S  G   D+ +   +  ++     
Sbjct: 783  ASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKG--YDQEEVFEKPTRETCQGM 840

Query: 773  -KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGSE 817
              +++  +D DGL   G  +   +       ++ +       TN R          + SE
Sbjct: 841  RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRFTKRDCSTFLRTSE 900

Query: 818  SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
            +  VD V V +       +   IR R  R P IGDKF+SRHGQKG C   +   DMPF+ 
Sbjct: 901  TGIVDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT- 957

Query: 878  VTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDE 937
              G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF ++V           
Sbjct: 958  CEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVN---------- 1007

Query: 938  SKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRS 997
                V ++  +L   G++  G EVLY+G  G ++T +IFIGP YYQRL+HMV DK   R+
Sbjct: 1008 ----VQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRA 1063

Query: 998  TGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCG 1057
             G +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +RL   SD +   VC+LCG
Sbjct: 1064 RGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCG 1123

Query: 1058 SVLTA-TFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAA 1116
             +  A T  H  +                   C  C+    +  V MPY  + L  EL +
Sbjct: 1124 IMAIANTRTHTYE-------------------CRGCRNKTQISLVRMPYACKLLFQELMS 1164

Query: 1117 MNI 1119
            M+I
Sbjct: 1165 MSI 1167


>gi|387018202|gb|AFJ51219.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Crotalus
            adamanteus]
          Length = 1167

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 324/1143 (28%), Positives = 513/1143 (44%), Gaps = 141/1143 (12%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   ++   ++   G+ P+ML++  C L G   
Sbjct: 102  MPNEARLRNLTYSAPLYVDITKTVIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 161

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   + +D +  YT +     
Sbjct: 162  RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGECR--S 216

Query: 151  CVRKD-QSSVTLKLYYLLNGSV---------RLGFWLQGKEYLLPVGIVLKALVDTNDLE 200
            C+    + + T+ +  L  G           R+   L   +  +P+ IV +AL   +D +
Sbjct: 217  CLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRD 276

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +++           P + E VK  L E     +  +   L  IG   +    
Sbjct: 277  ILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAKP 321

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     A+ V++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 322  GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 381

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   ++ L++ +   Q  I + GK F+   LA IK       ++
Sbjct: 382  GNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFI-DRGKDFNL-ELA-IK-------TR 431

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   ++  L TG    Q     Q RAG +    RL F   +S  R ++      G +  
Sbjct: 432  IISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLA 489

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G   GL+ ++     ++                + IL  L
Sbjct: 490  KPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEFL 538

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  +       + ++G  VG+    + E+++  LR+L+      VS  S
Sbjct: 539  EEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEVS 595

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
            +I D  E      +  G      L     K +   R+I    E   N            +
Sbjct: 596  MIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVV 655

Query: 599  ELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656
            E I   E+  V + +   D  + G       TH EIHP+ +L V A++ P+ DHNQSPRN
Sbjct: 656  EYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRN 715

Query: 657  MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
             YQ  M KQ MG  +     R D   + L  PQ P+V T +       E P G N+IVA+
Sbjct: 716  TYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAI 775

Query: 717  LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA---- 772
             +YTGY+ ED++I+N+S+VDRG      Y++     S  G   D+ +   + +++     
Sbjct: 776  ASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKG--YDQEEVFEKPSRETCQGM 833

Query: 773  -KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGSE 817
              +++  +D DGL   G  +   +       ++ +       TN R          + SE
Sbjct: 834  RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSE 893

Query: 818  SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
            +  VD V + +       +   IR R  R P IGDKF+SRHGQKG C   +   DMPF+ 
Sbjct: 894  TGIVDQVMITLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT- 950

Query: 878  VTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDE 937
              G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF ++V           
Sbjct: 951  CEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVN---------- 1000

Query: 938  SKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRS 997
                V ++  +L   G++  G EVLY+G  G ++T +IFIGP YYQRL+HMV DK   R+
Sbjct: 1001 ----VQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRA 1056

Query: 998  TGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCG 1057
             G +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +RL   SD +   VC+LCG
Sbjct: 1057 RGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCG 1116

Query: 1058 SVLTA-TFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAA 1116
             +  A T  H  +                   C  C+    +  V MPY  + L  EL +
Sbjct: 1117 LMAIANTRTHTYE-------------------CRGCRNKTQISLVRMPYACKLLFQELMS 1157

Query: 1117 MNI 1119
            M+I
Sbjct: 1158 MSI 1160


>gi|171689286|ref|XP_001909583.1| hypothetical protein [Podospora anserina S mat+]
 gi|170944605|emb|CAP70716.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1160

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 323/1148 (28%), Positives = 515/1148 (44%), Gaps = 164/1148 (14%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR    +Y   ++ D+   Y   G   +R+     + PVMLK+ +C+L GA++ ++  L 
Sbjct: 113  CRLRDATYAAPVVVDI--AYPKNGVRNIRKNVQLCRIPVMLKSSKCYLNGANNARMEELN 170

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            E   + GGYFI+ G E+    VIL ++    + V    +D + G           RK ++
Sbjct: 171  ECPLDPGGYFIVGGTEK----VILIQEQLSKNRVIVE-KDDKGGVQASVTSSTHERKSKT 225

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
             V LK   +L   +     ++     +P+ IVLKAL   +D +I   L    D +Y+ + 
Sbjct: 226  YVVLKKDRIL---LTHNILVEA----IPIVIVLKALGGLSDYDIM-ELVAGGDSRYQDD- 276

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ------------------PVI 259
                         I   +     + T+ Q L+++G   +                  P+ 
Sbjct: 277  -----------FLINFEDAAKAGVYTQQQALEYVGARVKMGGPKKPSPKFSAGPRRNPIE 325

Query: 260  DGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQ 319
            +GL + S   VA   ++D  F        K   +  M++++   V +  + D+ D + N+
Sbjct: 326  EGLDALSNLIVAHVTVKDLDFY------PKTIYIAMMVRRILMAVHNPELVDDRDFVGNK 379

Query: 320  EILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIG 379
             + L G L+++  ++ L+ ++ + K  ++           FF   N  +    +P   IG
Sbjct: 380  RLELAGQLLSLLFEDLLKGFIGQLKANME----------HFFKRPN--RTSAYDPIGPIG 427

Query: 380  TSIETMLKTG-RLATQTGLDL-----QQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
             S  TM+  G   A Q+G          RAG T    RL+++  +     +   + F   
Sbjct: 428  -SYGTMITQGLNRAIQSGNWTVKRFGMNRAGVTHVLSRLSYIAALGMMTRI--SSQFEKT 484

Query: 434  RTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSI 492
            R  S  R L P  WG LC   TP+GE CGL+ ++     + +            K++  +
Sbjct: 485  RKVSGPRALQPSQWGMLCTSDTPEGEACGLVKNLALMTHITTEAGE-------EKVKKCV 537

Query: 493  LRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVI 552
              ++ G+ +I            A +  +        + ++   K     RR  V +A   
Sbjct: 538  STLIEGIRLIEECSGTEMHEENAFIIHVNGTPYALTLDAAAFTKRFKQFRRRGVLSA--- 594

Query: 553  PDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSE--ESQNIELI----GPFEQ 606
                   ++ +    A   +++ T   +  RP   +       E+ +++L+      FE 
Sbjct: 595  -------FIGIHTSHATASIHIATDEGRICRPYIIVENGKSMLEAAHLDLLRHKKATFED 647

Query: 607  VFMEIRCPDGGDGGRRN-AFPATHE----------EIHPTGMLSVVANLTPYSDHNQSPR 655
             F++    +  D    N A  A HE          EI P  +L  VA L P+  HNQSPR
Sbjct: 648  -FLKKGVLEYLDVNEENDALIAVHESDINDQTTHLEIEPFTILGAVAGLIPFPHHNQSPR 706

Query: 656  NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
            N YQC M KQ +GF     + R D   Y L  PQ P+V T T      D+ P G NA V 
Sbjct: 707  NTYQCAMGKQAIGFIAYNQQNRIDTLHYTLVYPQRPMVITKTIQLIHYDKLPAGQNATVV 766

Query: 716  VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKD--AK 773
            V++Y+GYD+EDA++LNK+S DRG    Q+++  T +L    N+        +R++D  AK
Sbjct: 767  VMSYSGYDIEDALVLNKASCDRGFGRCQVFKKYTTELLQYPNRNKDRLGGVQRDEDGKAK 826

Query: 774  SLHSVIDSDGLPYVGQMIHPGEPYC---SIYDKTTNSWRTN-----------SRKGSESV 819
              H+V+D+DGL   G  +  G+      +  D+T+ +   +           S K  +  
Sbjct: 827  DRHAVLDNDGLATPGMKMKDGDIMIMKETPVDQTSTNIGEDRKITEFRPCPISYKIKDPA 886

Query: 820  FVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVT 879
             VD V +  K S     K  +R R TR P +GDKFSSRHGQKGV   +    D+PFS   
Sbjct: 887  IVDKVVITTKESGTPLLK--VRTRQTRRPELGDKFSSRHGQKGVVGIIVDQEDLPFSD-K 943

Query: 880  GMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESK 939
            G+ PD+I+NPH FPSRMT+  L E +  K   + G+      F ++ +            
Sbjct: 944  GLTPDIIMNPHGFPSRMTVGKLFECLTGKASVVAGR--REYGFGDAFR-----------S 990

Query: 940  SLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTG 999
              V+E+G++L   GF++ G +   SG+ G      +F GP++YQRL+HMV+DK   RS G
Sbjct: 991  HPVEEMGKVLIEHGFSWEGKDYFTSGITGEPHEAYLFNGPIFYQRLKHMVADKMHSRSRG 1050

Query: 1000 TMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSV 1059
                +TRQP +GR R GG+R GEMERD L+A+GA+ LL +RL   SD    DVC  CG +
Sbjct: 1051 PRAVLTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLMYSSDVTKVDVCERCGLM 1110

Query: 1060 LTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
                +                        C  C+T+  +  + MPY  + L  EL +MN+
Sbjct: 1111 GYKGY------------------------CQTCKTTSNVTKMNMPYAAKLLLQELISMNV 1146

Query: 1120 KITLQLGD 1127
             + +QL D
Sbjct: 1147 GVRMQLED 1154


>gi|194386684|dbj|BAG61152.1| unnamed protein product [Homo sapiens]
          Length = 1083

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 328/1140 (28%), Positives = 512/1140 (44%), Gaps = 141/1140 (12%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADSQKL 93
            H R   ++Y+  L  D+    +  G   ++   ++   G+ P+ML++  C L G   + L
Sbjct: 21   HARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDL 80

Query: 94   VSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVR 153
              L E   + GGYFI+NG E+V   +I  ++    ++   + +D +  YT +     C+ 
Sbjct: 81   CELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGECR--SCLE 135

Query: 154  KD-QSSVTLKLYYLLNGSV---------RLGFWLQGKEYLLPVGIVLKALVDTNDLEIFN 203
               + + T+ +  L  G           R+   L   +  +P+ IV +AL   +D +I  
Sbjct: 136  NSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILE 195

Query: 204  HLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQ 263
            H+   +++           P + E VK  L E     +  +   L  IG   +    G+ 
Sbjct: 196  HIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAKPGVT 240

Query: 264  SESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQ 319
             E     A+ V++  +  H+  ++     K   L +M+ +L          D+ D   N+
Sbjct: 241  KEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNK 300

Query: 320  EILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIG 379
             + L G L+    +   ++ L++ +   Q  I + GK F+   LA IK       ++ I 
Sbjct: 301  RLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFI-DRGKDFNL-ELA-IK-------TRIIS 350

Query: 380  TSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVR 439
              ++  L TG    Q     Q RAG +    RL F   +S  R ++      G +    R
Sbjct: 351  DGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLAKPR 408

Query: 440  KLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGV 499
            +L    WG +CP  TP+G   GL+ ++         Y S G+        + IL  L   
Sbjct: 409  QLHNTLWGMVCPAETPEGHAVGLVKNLALMA-----YISVGS------QPSPILEFLEEW 457

Query: 500  GMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAASVIP 553
             M  +L ++  +       + ++G  VG+    + E+++  LR+L+      VS  S+I 
Sbjct: 458  SM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEVSMIR 514

Query: 554  DDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------IELI 601
            D  E      +  G      L     K +   R+I    E   N            +E I
Sbjct: 515  DIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYI 574

Query: 602  GPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQ 659
               E+  V + +   D  +         TH EIHP+ +L V A++ P+ DHNQSPRN YQ
Sbjct: 575  DTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQ 634

Query: 660  CQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAY 719
              M KQ MG  +     R D   + L  PQ P+V T +       E P G N+IVA+ +Y
Sbjct: 635  SAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASY 694

Query: 720  TGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA-----KS 774
            TGY+ ED++I+N+S+VDRG      Y++     S  G   D+ +   +  ++       +
Sbjct: 695  TGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKG--FDQEEVFEKPTRETCQGMRHA 752

Query: 775  LHSVIDSDGLPYVGQMIHPGEPYCS----IYDKTTNSWRTNSR----------KGSESVF 820
            ++  +D DGL   G  +   +   S    + +       TN R          + SE+  
Sbjct: 753  IYDKLDDDGLIAPGVRVSGDDVIISKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGI 812

Query: 821  VDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTG 880
            VD V V +       +   IR R  R P IGDKF+SRHGQKG C   +   DMPF+   G
Sbjct: 813  VDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT-CEG 869

Query: 881  MRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKS 940
            + PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF ++V              
Sbjct: 870  ITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVN------------- 916

Query: 941  LVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGT 1000
             V ++  +L   G++  G EVLY+G  G ++T +IFIGP YYQRL+HMV DK   R+ G 
Sbjct: 917  -VQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGP 975

Query: 1001 MDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVL 1060
            +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +RL   SD +   VC+LCG + 
Sbjct: 976  IQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMA 1035

Query: 1061 TA-TFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
             A T  H  +                   C  C+    +  V MPY  + L  EL +M+I
Sbjct: 1036 IANTRTHTYE-------------------CRGCRNKTQISLVRMPYACKLLFQELMSMSI 1076


>gi|402869721|ref|XP_003898896.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 2
            [Papio anubis]
          Length = 1083

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 327/1140 (28%), Positives = 512/1140 (44%), Gaps = 141/1140 (12%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADSQKL 93
            H R   ++Y+  L  D+    +  G   ++   ++   G+ P+ML++  C L G   + L
Sbjct: 21   HARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDL 80

Query: 94   VSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVR 153
              L E   + GGYFI+NG E+V   +I  ++    ++   + +D +  YT +     C+ 
Sbjct: 81   CELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGECR--SCLE 135

Query: 154  KD-QSSVTLKLYYLLNGSV---------RLGFWLQGKEYLLPVGIVLKALVDTNDLEIFN 203
               + + T+ +  L  G           R+   L   +  +P+ IV +AL   +D +I  
Sbjct: 136  NSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILE 195

Query: 204  HLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQ 263
            H+   +++           P + E VK  L E     +  +   L  IG   +    G+ 
Sbjct: 196  HIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAKPGVT 240

Query: 264  SESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQ 319
             E     A+ V++  +  H+  ++     K   L +M+ +L          D+ D   N+
Sbjct: 241  KEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNK 300

Query: 320  EILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIG 379
             + L G L+    +   ++ L++ +   Q  I + GK F+   LA IK       ++ I 
Sbjct: 301  RLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFI-DRGKDFNL-ELA-IK-------TRIIS 350

Query: 380  TSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVR 439
              ++  L TG    Q     Q RAG +    RL F   +S  R ++      G +    R
Sbjct: 351  DGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLAKPR 408

Query: 440  KLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGV 499
            +L    WG +CP  TP+G   GL+ ++         Y S G+        + IL  L   
Sbjct: 409  QLHNTLWGMVCPAETPEGHAVGLVKNLALMA-----YISVGS------QPSPILEFLEEW 457

Query: 500  GMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAASVIP 553
             M  +L ++  +       + ++G  VG+    + E+++  LR+L+      VS  S+I 
Sbjct: 458  SM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEVSMIR 514

Query: 554  DDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------IELI 601
            D  E      +  G      L     K +   R+I    E   N            +E I
Sbjct: 515  DIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYI 574

Query: 602  GPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQ 659
               E+  V + +   D  +         TH EIHP+ +L V A++ P+ DHNQSPRN YQ
Sbjct: 575  DTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQ 634

Query: 660  CQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAY 719
              M KQ MG  +     R D   + L  PQ P+V T +       E P G N+IVA+ +Y
Sbjct: 635  SAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASY 694

Query: 720  TGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA-----KS 774
            TGY+ ED++I+N+S+VDRG      Y++     S  G   D+ +   +  ++       +
Sbjct: 695  TGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKG--FDQEEVFEKPTRETCQGMRHA 752

Query: 775  LHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGSESVF 820
            ++  +D DGL   G  +   +       ++ +       TN R          + SE+  
Sbjct: 753  IYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGI 812

Query: 821  VDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTG 880
            VD V V +       +   IR R  R P IGDKF+SRHGQKG C   +   DMPF+   G
Sbjct: 813  VDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT-CEG 869

Query: 881  MRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKS 940
            + PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF ++V              
Sbjct: 870  ITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVN------------- 916

Query: 941  LVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGT 1000
             V ++  +L   G++  G EVLY+G  G ++T +IFIGP YYQRL+HMV DK   R+ G 
Sbjct: 917  -VQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGP 975

Query: 1001 MDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVL 1060
            +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +RL   SD +   VC+LCG + 
Sbjct: 976  IQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMA 1035

Query: 1061 TA-TFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
             A T  H  +                   C  C+    +  V MPY  + L  EL +M+I
Sbjct: 1036 IANTRTHTYE-------------------CRGCRNKTQISLVRMPYACKLLFQELMSMSI 1076


>gi|331225399|ref|XP_003325370.1| DNA-directed RNA polymerase III subunit RPC2 [Puccinia graminis f.
            sp. tritici CRL 75-36-700-3]
 gi|309304360|gb|EFP80951.1| DNA-directed RNA polymerase III subunit RPC2 [Puccinia graminis f.
            sp. tritici CRL 75-36-700-3]
          Length = 1272

 Score =  381 bits (979), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 325/1145 (28%), Positives = 503/1145 (43%), Gaps = 163/1145 (14%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR   I+Y+  +   V  QY      V+ +    G+ P+ML++ +C L G    +L  + 
Sbjct: 235  CRLRDITYSAPI--SVTIQYTKGNKRVLSKGIPIGRIPIMLRSNKCVLTGKSDAELAKMT 292

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            E   + GGYF++ G E+    VIL ++    + +     D R+G T  A V     + +S
Sbjct: 293  ECPLDPGGYFVVKGTEK----VILVQEQLSKNRILIE-TDSRKG-TIMASVTSSTHERKS 346

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
                   Y++  + ++       +  +P+ I LKA   T+D E+   + C  ++ Y+   
Sbjct: 347  KT-----YVVTKNSKVYLKHNSIQEEIPIAIALKAYGITSDREVV-QIVCGNNDDYRAA- 399

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAE---TV 274
                         I +    +  + T+ Q L +IG+  + V  G  +     + E    V
Sbjct: 400  -----------FSICMEHCHEAGVFTQKQALAYIGKSVKMVKKGPVAGPKRPLTEEALEV 448

Query: 275  IRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITI 330
            +   +  H+  +N     K   L  M +++   + +  + D+ D + N+ + L G L+++
Sbjct: 449  LSTVVLAHVPADNLNLQPKAIYLAVMARRVVQAMANPKLVDDRDYVGNKRLELAGQLLSL 508

Query: 331  YLKEKLEDWLRKGKKLIQDEI---ENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLK 387
             L E L        KL  D++    N   +FD  N   +        +  I       + 
Sbjct: 509  -LFEDLFKKFNTDLKLNIDKVLKKPNRTTEFDAINQFRMH-------ADHISNGFIRAIS 560

Query: 388  TGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPESW 446
            TG  + +      +RAG T    RL+++  +     +   + F   R  S  R L P  W
Sbjct: 561  TGNWSIKRF--KMERAGITHVLSRLSYISALGMMTRI--SSQFEKTRKVSGPRALQPSQW 616

Query: 447  GFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV--LIGVGMIPS 504
            G LCP  TP+GE CGL+ ++     + +  D              I  V   IG   I S
Sbjct: 617  GMLCPSDTPEGEACGLVKNLALMTHITTDTDEE-----------PIWNVAYTIGCEDISS 665

Query: 505  LPKLVKSGPPAVLSVLLDGRVVGVIPSSE-IEKVVAHLRRL-KVSAASVIPDDLEVGYVP 562
            +       P   + V ++G ++G+  S E   +V    RR  K+S            +V 
Sbjct: 666  VTGTELYLPRHYI-VFINGNILGLTRSPERFVEVFRQFRRAGKISE-----------FVS 713

Query: 563  LSLGGAYPGLYLFTSPPKFVRPVRNISLPSE--ESQNIELIGPFEQVFME---------I 611
            + +      + + T   +  RP+  ++      ++ +IE +   E  F +         +
Sbjct: 714  IYMNADQQTVNIATDGGRICRPMIIVTNGDSMVKTHHIEKLKAGELSFDDFLSQGLIEYL 773

Query: 612  RCPDGGDGGRRNAFPATHE----------EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQ 661
             C +  D     +F A +E          EI P  +L  VA L PY  HNQSPRN YQC 
Sbjct: 774  DCNEEND-----SFIALYEEDIDSYTTHLEIEPFTLLGAVAGLIPYPHHNQSPRNTYQCA 828

Query: 662  MAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTG 721
            M KQ +G        R D  LY +  P  P+VRT T    G D+ P G NA VAV++Y+G
Sbjct: 829  MGKQAIGVIAYNQLHRIDTLLYLMVYPHHPMVRTKTIELVGYDKLPAGQNATVAVMSYSG 888

Query: 722  YDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSV--I 779
            YD+EDA+ILNK+S+DRG    Q+++  T  +    N          R+ + + L      
Sbjct: 889  YDIEDALILNKASLDRGFGRCQVFRKATAMIKRYPNGTYDRIADPPRDPEGQVLEKWKPC 948

Query: 780  DSDGLPYVGQMIHPGEPYCSIYD-------------KTTNSWRTN--SRKGSESVFVDYV 824
            D  G+  VG  ++ G  Y +                 T  SW     + +G+   ++D V
Sbjct: 949  DDGGVADVGMKVYNGNVYINKQSPSNANDNSVGAGAATVTSWANTPMTYRGTVPSYIDKV 1008

Query: 825  AV-DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRP 883
             V D ++ + L     +  R TR P +GDKFSSRHGQKGVC  +    DMPF+   G  P
Sbjct: 1009 MVTDTESDQTL---VKVLLRQTRRPELGDKFSSRHGQKGVCGLIVQQEDMPFND-RGTCP 1064

Query: 884  DLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVD 943
            D+I+NPH FPSRMT+  +LE ++ K G L G     T F        G    + SK L++
Sbjct: 1065 DIIMNPHGFPSRMTVGKMLELLSGKAGVLRGTVEYGTAFG-------GSKAVEMSKILIE 1117

Query: 944  ELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQ 1003
                     G++Y G + L SG+ G  L   +F+GP+YYQ+L+HMV DK   R+ G    
Sbjct: 1118 H--------GYSYLGKDYLTSGITGQPLEHYVFMGPIYYQKLKHMVLDKMHARARGPRAV 1169

Query: 1004 ITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTAT 1063
            +TRQP +GR R GG+R GEMERD L+AHGA+ LL +RL   SD    DVC  CG +    
Sbjct: 1170 LTRQPTEGRSRDGGLRLGEMERDCLIAHGASQLLLERLMLSSDSFELDVCQDCGFMGYNG 1229

Query: 1064 FIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITL 1123
            +                        C  C+    +  + +PY  + L  EL AMNI   L
Sbjct: 1230 W------------------------CVRCKNGNSVTKITIPYACKLLFQELMAMNIAPRL 1265

Query: 1124 QLGDG 1128
             L D 
Sbjct: 1266 VLEDA 1270


>gi|431893877|gb|ELK03694.1| DNA-directed RNA polymerase II subunit RPB2 [Pteropus alecto]
          Length = 1167

 Score =  381 bits (979), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 322/1143 (28%), Positives = 508/1143 (44%), Gaps = 141/1143 (12%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   ++   ++   G+ P+ML++  C L G   
Sbjct: 102  MPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 161

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   + +D +  YT +     
Sbjct: 162  RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGECR--S 216

Query: 151  CVRKD-QSSVTLKLYYLLNGSV---------RLGFWLQGKEYLLPVGIVLKALVDTNDLE 200
            C+    + + T+ +  L  G           R+   L   +  +P+ IV +AL   +D +
Sbjct: 217  CLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRD 276

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +++           P + E VK  L E     +  +   L  IG   +    
Sbjct: 277  ILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAKP 321

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     A+ V++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 322  GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 381

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   ++ L++ +   Q  I + GK F+     N         +K
Sbjct: 382  GNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFI-DRGKDFNLELAIN---------TK 431

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   ++  L TG    Q     Q RAG +    RL F   +S  R ++      G +  
Sbjct: 432  IISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLA 489

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G   GL+ ++     ++                + IL  L
Sbjct: 490  KPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEFL 538

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  +       + ++G  VG+    + E+++  LR+L+      VS  S
Sbjct: 539  EEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEVS 595

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
            +I D  E      +  G      L     K +   R+I    E   N            +
Sbjct: 596  MIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVV 655

Query: 599  ELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656
            E I   E+  V + +   D  +         TH EIHP+ +L V A++ P+ DHNQSPRN
Sbjct: 656  EYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRN 715

Query: 657  MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
             YQ  M KQ MG  +     R D   + L  PQ P+V T +       E P G N+IVA+
Sbjct: 716  TYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAI 775

Query: 717  LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA---- 772
             +YTGY+ ED++I+N+S+VDRG      Y++     S  G   D+ +   +  ++     
Sbjct: 776  ASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKG--FDQEEVFEKPTRETCQGM 833

Query: 773  -KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGSE 817
              +++  +D DGL   G  +   +       ++ +       TN R          + SE
Sbjct: 834  RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSE 893

Query: 818  SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
            +  VD V V +       +   IR R  R P IGDKF+SRHGQKG C   +   DMPF+ 
Sbjct: 894  TGIVDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT- 950

Query: 878  VTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDE 937
              G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF ++V           
Sbjct: 951  CEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVN---------- 1000

Query: 938  SKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRS 997
                V ++  +L   G++  G EVLY+G  G ++T +IFIGP YYQRL+HMV DK   R+
Sbjct: 1001 ----VQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRA 1056

Query: 998  TGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCG 1057
             G +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +RL   SD +   VC+LCG
Sbjct: 1057 RGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCG 1116

Query: 1058 SVLTA-TFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAA 1116
             +  A T  H  +                   C  C+    +  V MPY  + L  EL +
Sbjct: 1117 IMAIANTRTHTYE-------------------CRGCRNKTQISLVRMPYACKLLFQELMS 1157

Query: 1117 MNI 1119
            M+I
Sbjct: 1158 MSI 1160


>gi|301110510|ref|XP_002904335.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide
            [Phytophthora infestans T30-4]
 gi|262096461|gb|EEY54513.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide
            [Phytophthora infestans T30-4]
          Length = 1166

 Score =  381 bits (979), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 350/1227 (28%), Positives = 528/1227 (43%), Gaps = 211/1227 (17%)

Query: 9    FEPLRELVRHHIESFDYM--------------------------------------LDE- 29
            F  LR LV+ HI+SFDY                                       +DE 
Sbjct: 38   FLQLRGLVKQHIDSFDYFTSVDMRNIVRAQANNVVRSDADPKFFLQYTDIQLGAPSIDEE 97

Query: 30   ---GLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQ 86
                 S     CR    +Y   +   V  +Y      V   +   G+ P+ML++ RC L 
Sbjct: 98   AFVSASVTPHQCRLRDRTYAAPVYVSV--RYRRGNKIVTNNKVLIGRIPIMLRSSRCVLA 155

Query: 87   GADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKA 146
            G     L  LKE   + GGYFI+ G+E+V   V++ +Q     + ++      +G  +  
Sbjct: 156  GKSEAALAKLKECPYDPGGYFIVRGVEKV---VLIHEQ-----LSKNRVIIEEDGKHNVC 207

Query: 147  VVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLT 206
              I     ++ S T    +L  G V L     G +  +P+ IV + +   +D EI + + 
Sbjct: 208  ASITSSTHERKSRTN--IFLNKGRVYLKSNSFGSD--IPIVIVFRGMGVESDQEIVSLVG 263

Query: 207  CCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV--IDGL-- 262
               D              + + +     E  DL + T+ Q L++IG     +  I  +  
Sbjct: 264  SESD--------------ICDALSASFEEASDLKVFTQQQALEYIGSKMNALTKIGAMGG 309

Query: 263  ----------QSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQK-----LFSLVDHT 307
                         +    A + + + +  H+  +N  F L    +       LF+  D T
Sbjct: 310  RHRGGAGRPQNDRNLVDAARSALANLVLNHVPCDNFNFRLKSIYVAHIVRRILFTDKDRT 369

Query: 308  SVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIK 367
             + D+ D   N+ + L G L+++      ED  ++    ++ + +    K    N A++ 
Sbjct: 370  RL-DDKDYYGNKRLELAGQLLSLLF----EDLFKRFNSDLKRQADMVLSKP---NRASVF 421

Query: 368  KVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRG 427
             +++   +  I       L TG    +       RAG T    RL+++  +     +   
Sbjct: 422  DILKCVRTDTITQGFYHALSTGNWTLKRFR--MDRAGVTHVLSRLSYMSALGMMTRI--S 477

Query: 428  ASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFS 486
            + F   R  S  R L P  WG LCP  TP+GE CGL+ ++   C V S            
Sbjct: 478  SQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNLALLCHVTS-----------D 526

Query: 487  KMRTSILRVLIGVGMIP-SLPKLVKSGPPAVLSVLLDGRVVG--VIPSSEIEKVVAHLRR 543
            +    I R+   +G+   SL    +    +   V+L+G ++G  V P +     V  LRR
Sbjct: 527  EEPAPIKRLCFDLGVTDVSLSSGEEINHASNYLVMLNGVIIGTHVNPRA----FVTRLRR 582

Query: 544  LKVSA-----ASVIPDDLEVGYVPLSLGGAYPGLYLFTSP------------PKFVRPVR 586
            ++ +       SV+  D++      S GG      L   P             +    VR
Sbjct: 583  IRRAGLIGEFVSVMIHDVQRVVYIASDGGRVCRPLLLIDPVTHRTRLTQRHLDELRAGVR 642

Query: 587  NISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTP 646
            ++S    E   +E +   E+    +   +   G R      TH EI P  +L VV+ L P
Sbjct: 643  DLSSLIVEG-CVEYVDVNEENNCLVALHESEIGDR-----TTHLEIDPVTILGVVSGLIP 696

Query: 647  YSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEY 706
            Y  HNQSPRN YQC M KQ +G        R D  LY +  PQ P+V+T        D  
Sbjct: 697  YPHHNQSPRNTYQCAMGKQAIGTIAMNQFERIDTLLYTMVYPQMPMVKTRVLDLVNFDRV 756

Query: 707  PTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI---YQTETIDLSD--------- 754
            P G NAIVAV++Y+GYD+EDA++LNK+S+DRG     +   YQT     ++         
Sbjct: 757  PAGQNAIVAVMSYSGYDIEDAIVLNKASLDRGFGRCMVFKKYQTMIKKYANGSYDRIVGP 816

Query: 755  -DGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT--------- 804
             D + +          ++AK   S +D+DG+  VG ++  G    +    T         
Sbjct: 817  PDFDSLAAAGGAGMGFRNAK--FSSLDADGISRVGGIVQNGAIMINKEQPTQFNDSVDGR 874

Query: 805  -----TNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHG 859
                 T S    + KG    +VD V +    + +   K  IR   TR P IGDKFSSRHG
Sbjct: 875  DPLDVTYSPSPTTYKGPIPAYVDKVLLTSSEANHFLVKVLIR--QTRRPEIGDKFSSRHG 932

Query: 860  QKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDA 919
            QKGVC  +    DMPF+   G+ PDLI+NPH FPSRMT+  ++E +A K G L G+    
Sbjct: 933  QKGVCGTIRNQEDMPFND-QGICPDLIMNPHGFPSRMTVGKMIELIAGKAGVLTGRRAYG 991

Query: 920  TPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGP 979
            T F    K  + D   D S+ LV          GFNY G + L SG+ G  + C IF+GP
Sbjct: 992  TAFGE--KYGSADHVLDCSRELVKN--------GFNYAGKDYLTSGITGEAIECYIFMGP 1041

Query: 980  VYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHD 1039
            +YYQ+L+HMV DK   R+ G    +TRQP +GR R GG+R GEMERD L+ +GA+ LL +
Sbjct: 1042 IYYQKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLME 1101

Query: 1040 RLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGME 1099
            RL   SD   ADVC  C                R +G         +  C  C++ + + 
Sbjct: 1102 RLMLSSDAFSADVCQGC----------------RMLG--------YEGWCQHCKSEEKVV 1137

Query: 1100 TVAMPYVFRYLAAELAAMNI--KITLQ 1124
            ++ +PY  + L  EL AMNI  ++TL+
Sbjct: 1138 SIRIPYACKLLFQELQAMNIVPRLTLK 1164


>gi|307178142|gb|EFN66950.1| DNA-directed RNA polymerase III subunit RPC2 [Camponotus floridanus]
          Length = 1120

 Score =  381 bits (979), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 320/1152 (27%), Positives = 515/1152 (44%), Gaps = 181/1152 (15%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR   ++Y+  ++ D+E  ++     +       G+ PVML++  C L      +L  L 
Sbjct: 85   CRLRDLNYSAPIIVDIE--HIRNNQRIRNTNMVIGRMPVMLRSSNCVLTNKSHYELAKLN 142

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC-----V 152
            E   + GGYF++NG E+V   +++ +Q     MVR+      +G   K ++  C      
Sbjct: 143  ECPHDPGGYFVINGQEKV---ILIQEQ-----MVRNRIIVEEDG---KEIIASCNSFTHE 191

Query: 153  RKDQSSVTLKL--YYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYD 210
            +K ++S+  K   YY+ N   +             + +V KA+   +D++I   +     
Sbjct: 192  KKTKTSIVGKAGKYYIRNNMFQDDIL---------ITVVFKAMGIVSDIDIIQMIG--EK 240

Query: 211  EKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAV 270
            EKY             ++    +   Q+L + +  Q L+++    +         + ++V
Sbjct: 241  EKY------------LDKFIACIENCQELGIFSEKQALKYLNNKRRQTRSAQSYAAKFSV 288

Query: 271  --------AETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEIL 322
                    A  V+     +  N      +L + M++++       ++ DN D   N+ + 
Sbjct: 289  IDEMKDLLAANVLSHVPVIDFNFRTKALHLAL-MIRRVIDAQSDRNLIDNKDYYGNKRLE 347

Query: 323  LPGHLITIYLKE--KLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGT 380
            L G L+ +  ++  K  +W     K+I D+     K   F    +I K + K+    I  
Sbjct: 348  LAGSLLALMFEDLFKRFNW---ELKMIADKNIPKVKAAPF----DITKYIRKDT---ITN 397

Query: 381  SIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VR 439
             +   + +G    +      +R G T    RL+++  +     VH  + F   R  S  R
Sbjct: 398  GLAFAISSGNWTIKRFR--MERHGVTQVLSRLSYISALGMMTRVH--SQFEKTRKISGPR 453

Query: 440  KLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGV 499
             L    WG LCP  TP+GE CGL+ ++     + +       I+    +   I+   +G 
Sbjct: 454  ALHGSQWGMLCPNDTPEGEACGLVKNLALMAHITTEMPEGPFIKLMRNLGVQIIYTCVGG 513

Query: 500  GMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVG 559
             +I             +  V ++G + G+I  S + ++V   R L+            +G
Sbjct: 514  ELIKK----------DIYVVFVNGNMAGIIKESLVLQLVHQFRLLR-----------RMG 552

Query: 560  Y----VPLSLGGAYPGLYLFTSPPKFVRPVRNIS----LPSEESQN-------------- 597
            Y    V +S+   +  + +     +  RP+  +     L  E+  N              
Sbjct: 553  YIDCFVSISVQRRHKCVQVSCDGGRLCRPLIIVKDGKPLIEEKHMNYLEMNLWTFNDFVH 612

Query: 598  ---IELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSP 654
               IE +   E+    I C +     +      TH EI    +L V A L PY +HNQSP
Sbjct: 613  AGLIEYLDVNEENDSLIACKESEIIAQ-----TTHLEIAEFTILGVCAGLIPYPNHNQSP 667

Query: 655  RNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIV 714
            RN YQC M KQ +G      + R D  +Y+L  PQ PIV+T        D+ P G NA+V
Sbjct: 668  RNTYQCAMGKQAIGAIGYNQRNRIDTLMYNLVYPQRPIVKTRQIELINFDKLPAGENALV 727

Query: 715  AVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDR---GQKLFRRNKD 771
            AV++++GYD+EDA+ILNK+S+DRG     +Y+     + +  N+V     GQ L    K 
Sbjct: 728  AVMSFSGYDIEDALILNKASIDRGYGRCLVYRNSKCIIKNHPNQVMDVILGQSLDAITKK 787

Query: 772  AKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT--------------TNSWRTN--SRKG 815
                H ++++DG+   G M+   +   +    T              +  +R+   S KG
Sbjct: 788  PIPKHDILENDGIAAAGVMVENKKVMVNKAVSTRSGNLGPSRSDNFQSQDYRSAEVSYKG 847

Query: 816  SESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPF 875
            S   +++ V V   N++N      +  R TR P IGDKFSSRHGQKGV   +    D+PF
Sbjct: 848  SVPAYIEKVMVS-SNAEN-AFLIKLLLRQTRRPEIGDKFSSRHGQKGVVGLIVDQEDLPF 905

Query: 876  SGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGT 935
            +   G+ PD+I+NPH FPSRMT+  L+E +A K G ++GKF DAT F  +          
Sbjct: 906  NDY-GICPDVIMNPHGFPSRMTVGKLIEVLAGKAGIVNGKFHDATAFEGAK--------- 955

Query: 936  DESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQV 995
                  V++L E L   G+NY G ++ YSG+ G  +T  +F GPVYYQ+L+HMV DK  V
Sbjct: 956  ------VEDLCEELAQHGYNYLGKDLFYSGMNGQPITGYLFFGPVYYQKLKHMVQDKIHV 1009

Query: 996  RSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSL 1055
            R+ G    +TRQP +GR + GG+R GEMERD L+ +GA+ LL +RL   SD    D+C+ 
Sbjct: 1010 RAKGPKVILTRQPTEGRSKDGGLRLGEMERDCLIGYGASMLLIERLMLSSDSFQVDICNK 1069

Query: 1056 CGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELA 1115
            CG +    +                        C  C +S  + T+ MPY  + L  EL 
Sbjct: 1070 CGLMGYNGW------------------------CQRCSSSSSISTITMPYACKLLFQELQ 1105

Query: 1116 AMNIKITLQLGD 1127
             MNI   L L D
Sbjct: 1106 CMNILPRLTLKD 1117


>gi|327311708|ref|YP_004338605.1| DNA-directed RNA polymerase subunit beta [Thermoproteus uzoniensis
            768-20]
 gi|326948187|gb|AEA13293.1| DNA-directed RNA polymerase subunit beta [Thermoproteus uzoniensis
            768-20]
          Length = 1127

 Score =  381 bits (979), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 340/1147 (29%), Positives = 523/1147 (45%), Gaps = 176/1147 (15%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
              R    +Y+  +   V   Y+D   P   E    G+ P+M+K+++C+L     ++    
Sbjct: 98   EARLRNATYSAPMYLTVTL-YVD-DEPYATETIYAGELPIMVKSKKCNLTRLKPEEYPKR 155

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
             E+  + GGYFI+NG ERV  S      + P+  V            DK   IR + K  
Sbjct: 156  FEDPEDPGGYFIINGSERVVISQEDLVTDRPIYDV-----------GDKPT-IRYLAKVI 203

Query: 157  SS-----VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDE 211
            S+      T+ + Y  +G + +   L      +P  + ++A+   +D +I   L    D 
Sbjct: 204  STGPGYRATMTVEYHKDGVIYV--TLSAIPVRIPFTVYMRAMGLESDQDIV--LAVSDDP 259

Query: 212  KYKKE---KGAVGSPLVSER--------VKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
              +KE       G  + + R         KI + + + + +   LQ L    ++F P ++
Sbjct: 260  DIQKELLPSLLAGQEIAATRDDALDFVGGKIAVGQPRPIRIERALQILD---KYFLPNLN 316

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQE 320
              Q     A+ E  I+            K  LL  +++ L  +       D+ D + N+ 
Sbjct: 317  P-QKPDEKAMEEARIK------------KALLLGQVVKGLIEMQLGRRKPDDKDHVANKR 363

Query: 321  ILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGT 380
            + L   L+    +  ++ +L+        E++N  +K+             K P  Q   
Sbjct: 364  VRLVNDLLAQLFRTVMKQFLQ--------ELKNQLEKY---------YARGKIPHLQTIV 406

Query: 381  SIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT---S 437
              + + +  + A  TG  +  + G +   +R N+L  +S+ R V    S    RT     
Sbjct: 407  RPDIITERVKQALATGNWVGGKTGVSQILDRTNYLSTLSYLRRVVSSLS----RTQPHFE 462

Query: 438  VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLI 497
             R L P  WG LC V TP+G+  GL+ ++     +    D              + + L 
Sbjct: 463  ARDLHPTQWGRLCAVETPEGQNVGLVKNLALLAEITIGVDE-----------AVVEKTLN 511

Query: 498  GVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLE 557
             +G++P L    + G      V L+GR++G+      E++V  LR+++      I D++ 
Sbjct: 512  ELGVVPVLE--ARRGGLEGAEVYLNGRLIGI--HQNPEELVKTLRKMRRQGK--ISDEVN 565

Query: 558  VGYVPLSLGGAYPGLYLFTSPPKFVRPVRNIS-----LPSEESQNI---ELIGPFEQVFM 609
            V +    LG A   +Y+     +  RP+  I      L  E  Q +   EL         
Sbjct: 566  VAH----LGDA---VYVNCDGGRIRRPLLVIEDGKLKLTKEHVQKLASGELTWNDLVKMG 618

Query: 610  EIRCPDGGDGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQ 659
             +   D  +    NA+ A          TH EI P+ +L  +A++ PY +HNQSPRN Y+
Sbjct: 619  VVEYLDADE--EENAYIAVGPEPDMSKYTHMEIVPSSILGAIASIIPYLEHNQSPRNQYE 676

Query: 660  CQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAY 719
              MAKQ++G       ++ D + + L  P+ PIV T      G    P G NA+VA+L Y
Sbjct: 677  AAMAKQSLGLPQANFMYKLDSRGHMLYYPERPIVTTRGLELIGYSRKPAGQNAVVALLTY 736

Query: 720  TGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVDRGQ--KLFRRNKDAKSLH 776
            TGY++EDA+I+NKSSVDRG+     Y+T ET +    G + DR +      R       +
Sbjct: 737  TGYNIEDAVIMNKSSVDRGLFRSNFYRTYETEEQKYPGGEEDRIEVPDSSARGYRGPEAY 796

Query: 777  SVIDSDGLP----YV--GQMI----HPGEPYCSIYDKTTNSWRTNS----RKGSESVFVD 822
            S +D DG+     YV  G++I     P   Y ++  +     R ++    R+G   + VD
Sbjct: 797  SHLDEDGIAPPEVYVTGGEVIIGKTAPPRFYMTLETEKILKERRDASIPVRRGERGI-VD 855

Query: 823  YVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMR 882
             V +      N  +   +R R  R P +GDKF+SRHGQKGV   L    DMPF+   G+ 
Sbjct: 856  RVVITESPEGN--KLVKVRLRELRVPELGDKFASRHGQKGVIGMLLRQEDMPFTE-DGIV 912

Query: 883  PDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLV 942
            PD+I+NPHA PSRMT+  LLES+A K G+L G+ +DATPF           G  E     
Sbjct: 913  PDIIVNPHAMPSRMTVGQLLESIAGKAGALTGQLIDATPF----------EGVTEG---- 958

Query: 943  DELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMD 1002
             EL E+L   GF + G EV+YSG+ G +L  +IFIG VYYQ+L HMV+DK   RS G + 
Sbjct: 959  -ELRELLMKLGFRWDGKEVMYSGITGEKLVADIFIGIVYYQKLHHMVADKIHARSRGPVQ 1017

Query: 1003 QITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCG--SVL 1060
             +TRQP +GR R GG+R GEMERD L+AHGA+ LL++R+   SD +   VC LCG  + L
Sbjct: 1018 ILTRQPTEGRSREGGLRLGEMERDVLIAHGASALLYERMVESSDKYTMYVCELCGLPAYL 1077

Query: 1061 TATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIK 1120
             A    P+                    C     S     V +PY F+ L  EL A+ I 
Sbjct: 1078 DAKTNRPK--------------------CPIHGESGQFAKVVVPYAFKLLLQELIALGIY 1117

Query: 1121 ITLQLGD 1127
              L+L +
Sbjct: 1118 PKLELAE 1124


>gi|367035314|ref|XP_003666939.1| hypothetical protein MYCTH_2312111 [Myceliophthora thermophila ATCC
            42464]
 gi|347014212|gb|AEO61694.1| hypothetical protein MYCTH_2312111 [Myceliophthora thermophila ATCC
            42464]
          Length = 1155

 Score =  381 bits (979), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 321/1154 (27%), Positives = 512/1154 (44%), Gaps = 177/1154 (15%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR   ++Y   ++ D+   Y      +VR+     + PVMLK+ +C L GA + ++  + 
Sbjct: 109  CRLRDMTYAAPVVVDI--VYSRDRKKIVRKDIPLCRIPVMLKSAKCCLSGATNAQMEIMN 166

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            E   + GGYFI+NG E+    VIL ++    + V     ++  G +         RK ++
Sbjct: 167  ECPLDPGGYFIINGTEK----VILIQEQLSKNRVIVEADEKTGGVSASVTSSTHERKSKT 222

Query: 158  SVTLKL-YYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
             V LK    +LN +V +          +P+ IVLKAL   +D EI   L    D +Y+ +
Sbjct: 223  YVILKKDRIVLNHNVLV--------EPIPIVIVLKALGGLSDYEIM-ELVAGGDARYQDD 273

Query: 217  KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ----------------PVID 260
                          I   E     + T+ Q L+++G   +                PV +
Sbjct: 274  ------------FLINFDEATKAGVFTQQQALEYVGSRVKMGGPKKGRSMAAPRRSPVEE 321

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQE 320
            GL + +   VA   I+D  F        K   +  M++++        + D+ D + N+ 
Sbjct: 322  GLDALANVVVAHVEIQDLDFY------PKAIYIAMMVRRVLMASHDPKLVDDRDFVGNKR 375

Query: 321  ILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGT 380
            + L G L+++  ++  + ++   K          G    FF   N  +    +P   I +
Sbjct: 376  LELAGQLLSLLFEDMFKMFVGSLK----------GNMEYFFKKPN--RTSAYDPVGPISS 423

Query: 381  SIETMLKTGRLATQTG-LDLQQ----RAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
              + + +    A Q+G  ++++    RAG T    RL+++  +     +   + F   R 
Sbjct: 424  QGQYITQGLNRAIQSGNWNVKRFNMNRAGVTHVLSRLSYIAALGMMTRI--SSQFEKTRK 481

Query: 436  TS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILR 494
             S  R L P  WG LCP  TP+GE CGL+ ++     + +  +          ++  I  
Sbjct: 482  VSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTNAEE-------EPVKNWIFS 534

Query: 495  VLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVI--PSSEIEKVVAHLRRLKVSAASVI 552
            ++ GV  I          P + + + L+G    +   P     +     RR  +S     
Sbjct: 535  LIPGVEPIRMFTGTEMHRPGSYI-IHLNGTPFALTRHPKQFAARFKTMRRRGHISP---- 589

Query: 553  PDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP--VRNISLPSEESQNIELI----GPFEQ 606
                   +V + +   +  +++ T   +  RP  +     P  + +++ L+      F+ 
Sbjct: 590  -------FVGIHINEHFSAIHIATDEGRICRPYIIVKDGKPRLKKEHLRLLQLGKATFDD 642

Query: 607  VFMEIRCPDGGDGGRRN-AFPATHEE----------IHPTGMLSVVANLTPYSDHNQSPR 655
             F++    +  D    N A  A  EE          I P  +L  VA L P+  HNQSPR
Sbjct: 643  -FLKNSVIEYLDVNEENDALIAIREEDVNQSTTHMEIEPFTILGAVAGLIPFPHHNQSPR 701

Query: 656  NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
            N YQC M KQ +G        R D  LY L  PQ P+V T T      D+ P G NA V 
Sbjct: 702  NTYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMVITKTIQLIHYDKLPAGQNATVV 761

Query: 716  VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSL 775
            V++Y+GYD+EDA++LNK+S DRG    Q+++  T +L    N         +++++ +++
Sbjct: 762  VMSYSGYDIEDALVLNKASCDRGFGRCQVFRKYTAELQQYPNGRKDRLGGIQKDEEGRTI 821

Query: 776  --HSVIDSDGLPYVGQMIHPGEPYC---SIYDKTTNSWRTNSRKGSES------------ 818
              H+ +D DGL  VG  +H GE      +  D+T+      S +GS+             
Sbjct: 822  AKHACLDKDGLAVVGYRVHSGETMIMKETPIDQTSTG--IGSDRGSDEFRPAPINYRIPD 879

Query: 819  -VFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
              ++D V V   N++       ++ R TR P +GDKFSSRHGQKGV   +    DMPFS 
Sbjct: 880  PAYIDKVMV--SNTEKNTAIIKVQTRQTRRPELGDKFSSRHGQKGVVGIIVDQEDMPFSD 937

Query: 878  VTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGK----FMDATPFANSVKKTNGDT 933
             +G+ PD+I+NPH FPSRMT+  L E +  K   + G+    F DA              
Sbjct: 938  -SGLVPDIIMNPHGFPSRMTVGKLFECLTGKASVVAGRRDYGFGDAF------------- 983

Query: 934  GTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKF 993
                    V+E+G +L   GF++ G +   SG+ G      +F GP+YYQRL+HMV DK 
Sbjct: 984  ----RSHPVEEMGRVLIEHGFSWEGKDYFTSGITGEPHEAYLFNGPIYYQRLKHMVQDKM 1039

Query: 994  QVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVC 1053
              RS G    +TRQP +GR R GG+R GEMERD L+A+GA+ LL +RL   SD    D+C
Sbjct: 1040 HSRSRGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLMISSDGTQVDIC 1099

Query: 1054 SLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAE 1113
              CG +    F                        C  C ++  +  + MPY  + L  E
Sbjct: 1100 ERCGLLGYKGF------------------------CQTCGSTSQVTQMTMPYAAKLLVQE 1135

Query: 1114 LAAMNIKITLQLGD 1127
            L +MN+ + +QL D
Sbjct: 1136 LISMNVGVRMQLED 1149


>gi|156538773|ref|XP_001607902.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Nasonia
            vitripennis]
          Length = 1175

 Score =  381 bits (978), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 324/1151 (28%), Positives = 509/1151 (44%), Gaps = 144/1151 (12%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAG---SPVVRERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   +    ++   G+ P+ML+++ C L G   
Sbjct: 109  MPNEARLRNLTYSAPLYVDITKTVIKEGEEPTETQHQKTFIGKIPIMLRSKYCLLAGLSD 168

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  Y  KA +  
Sbjct: 169  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSIKDGKYAY--KAEIRS 223

Query: 151  CVRKDQSSVTLKLYYLLNGS----------VRLGFWLQGKEYLLPVGIVLKALVDTNDLE 200
            C+      V+     +++ S           R+   L      +P+ IV +AL    D +
Sbjct: 224  CLEHSSRPVSTLWINMMSKSGAAIKKSAIGQRIIAILPYIRQEIPIMIVFRALGFVADRD 283

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +D+           P + E VK  L E     +  +   L  IG   +    
Sbjct: 284  ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGARP 328

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     A  +++     H+  ++     K   L +M+ +L S        D+ D  
Sbjct: 329  GVTKERRIKYAREILQKETLPHVGVSDFCETKKAYFLGYMVHRLLSASLGRRELDDRDHY 388

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   ++ +++ +   Q  I + GK F+   LA IK       +K
Sbjct: 389  GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFI-DRGKDFN-LELA-IK-------TK 438

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   +   L TG    Q     Q RAG +    RL F   +S  R V+      G +  
Sbjct: 439  IITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 496

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG LCP  TP+G+  GL+ ++     ++                + IL  L
Sbjct: 497  RPRQLHNTLWGMLCPAETPEGQAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  S       + ++G  VG+    + ++++A LR+L+      VS  S
Sbjct: 546  EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPDQLMATLRKLRRQMDIIVSEVS 602

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
            ++ D  +      +  G      L       +   R+I +  E   N            +
Sbjct: 603  MVRDIRDREIRIYTDAGRISRPLLIVENQLLLLKKRHIEMLKERDYNNDGWQELVSQGVV 662

Query: 599  ELIGPF-EQVFMEIRCPDGGDGGRRNAFPA--THEEIHPTGMLSVVANLTPYSDHNQSPR 655
            E I    E+  M    P+     +  A+    TH EIHP  +L V A++ P+ DHNQSPR
Sbjct: 663  EYIDTLEEETVMIAMSPEDLRQEKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPR 722

Query: 656  NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
            N YQ  M KQ MG  +     R D   + L  P  P+V T +       E P G N+IVA
Sbjct: 723  NTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVA 782

Query: 716  VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQ----TETI---DLSDDGNKVDRGQKLFRR 768
            +L YTGY+ ED++ILN S+V+RG      Y+    +ET    D+ +   K +R      R
Sbjct: 783  ILCYTGYNQEDSIILNTSAVERGFFRSVFYRSYKDSETKRLGDVEEQFEKPNRQTCQGMR 842

Query: 769  NKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIY--------DKTTNSWRTNSR------K 814
            N    +++  +D DG+   G  +   +              D  +++ R   R      +
Sbjct: 843  N----AIYDKLDEDGIISPGIRVSGDDVIIGKTMTLPETDDDLDSSTKRFTKRDASTFLR 898

Query: 815  GSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMP 874
             SE+  VD V + + NS+   +   IR R  R P IGDKF+SRHGQKG C   +   DMP
Sbjct: 899  NSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMP 956

Query: 875  FSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTG 934
            F+   GM PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF ++V        
Sbjct: 957  FT-CEGMTPDIIINPHAIPSRMTIGHLIECIQGKVSANKGEIGDATPFNDAVN------- 1008

Query: 935  TDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQ 994
                   V ++  +L   G+   G E++Y+G  G ++  ++F+GP YYQRL+HMV DK  
Sbjct: 1009 -------VQKISTLLMEYGYQLRGNEIMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIH 1061

Query: 995  VRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCS 1054
             R+ G +  + RQP++GR R GG+RFGEMERD  ++HGAA  L +RL   SD +   VC+
Sbjct: 1062 SRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCN 1121

Query: 1055 LCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAEL 1114
             CG +  A   +                      C  C+    +  V +PY  + L  EL
Sbjct: 1122 FCGLIAIANLRN------------------NTFECKGCKNKTQISQVRLPYAAKLLFQEL 1163

Query: 1115 AAMNIKITLQL 1125
             +MNI   L +
Sbjct: 1164 MSMNIAPRLMI 1174


>gi|294950795|ref|XP_002786777.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
            putative [Perkinsus marinus ATCC 50983]
 gi|239901131|gb|EER18573.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
            putative [Perkinsus marinus ATCC 50983]
          Length = 1140

 Score =  381 bits (978), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 335/1152 (29%), Positives = 509/1152 (44%), Gaps = 199/1152 (17%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRER-FNFGQFPVMLKTRRCHLQGADSQKLVSL 96
            CR   ++Y   ++ D+ +     G  VVR+     G+ P+ML+++ C L  A ++++  +
Sbjct: 109  CRIRDMTYASDILVDISYVR---GREVVRKNGVCVGRLPIMLRSKLCRLHDATTEQMERM 165

Query: 97   KEEAAEMGGYFILNGLERVF---------RSVI-LPKQNYPMSMVRSSFRDRREGYTDKA 146
            +E   + GGYFI+ G E+V          R ++ +  +    ++V SS  D      +K+
Sbjct: 166  QECPHDPGGYFIIKGTEKVLLMQEQLSNNRIIVEMDPKKLVQAVVTSSTAD------NKS 219

Query: 147  VVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLT 206
              + C + + S + +K                    L+P  I+L+A+   +D EI   + 
Sbjct: 220  RTVVCFKSELSGLFVKHSAFTE--------------LIPAVIMLRAMGMESDQEIVQMV- 264

Query: 207  CCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVI--DGLQS 264
                     EK  V   ++S      L +     + ++ Q L+++G   +  +  DG  S
Sbjct: 265  -------GTEKCHVDGMILS------LQDAHATGVFSQQQALEYLGNKLKIRMYADGSFS 311

Query: 265  ESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLP 324
             ++        +   F      + K   L  M+++       +++ D+ D   N+ + L 
Sbjct: 312  SAFDQDKGGATKPLDF------SGKCRFLCLMMRRALDARSDSTLLDDRDYYGNKRLELA 365

Query: 325  GHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIET 384
            G LI +      ED  +     I+  ++    KF            ++  S + G S   
Sbjct: 366  GQLIALLF----EDLFKSMNTEIKKSVDMRLTKF-----------FQQTSSARAGRST-V 409

Query: 385  MLKTGR---LATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGAS-FAGLRTTS-VR 439
             L +G    L   TG   + R   +  ++ L+   FI+   A+ R  S F   R  +  R
Sbjct: 410  GLDSGYPDVLLRATGNIKRFRIDRSGVSQVLSRFSFIAALGAMTRVKSQFEKSRKLAGPR 469

Query: 440  KLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGV 499
             L P  WG LCP  TP+GE CGL+  ++    V +  D  G IR         L V    
Sbjct: 470  ALQPSQWGMLCPSDTPEGEQCGLIKALSLLAHVTTP-DEEGPIRRLCYS----LGVEDAA 524

Query: 500  GMIPSLPKLVKSGPPAVLSVLLDGRVVGV--IPSSEIEKVVAHLRRLKVSA-ASVIPDDL 556
            G+     +L  +G    ++V L+G ++GV   P + +  +    RR K+    S+   + 
Sbjct: 525  GLTGE--ELHSAG---TITVFLNGALLGVHRRPQTFMSDMRTLRRRGKIGEFVSIYEHEA 579

Query: 557  EVGYVPLSLGG--AYPGLYLFTSPPKF-----VRPVRNISLP---------------SEE 594
            +   +  + GG    P + +    P       +R +R+  L                +EE
Sbjct: 580  QRAIIIATDGGRLCRPLIVVKKGKPMLKPEVHLRKLRSGELRFTDFLRLGIIEWVDVNEE 639

Query: 595  SQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSP 654
            + +   I P E V ME                +TH EI P  +L  VA L PY  HNQSP
Sbjct: 640  NNSYIAINP-EDVTME----------------STHLEIEPLTLLGAVAGLVPYPHHNQSP 682

Query: 655  RNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIV 714
            RN YQC M KQ MG        R D +L  L  PQ P+ ++ T    G D  P G NA V
Sbjct: 683  RNTYQCAMGKQAMGNIACNQHLRTDTQLLLLTYPQQPMCKSRTIDLIGYDNLPAGHNASV 742

Query: 715  AVLAYTGYDMEDAMILNKSSVDRGM---CHGQIYQTETIDLSDDGNKVDRGQKLFRRNKD 771
            AV++Y+GYD+EDA+I+NK+S+DRG    C  + Y T     +   ++  R   +      
Sbjct: 743  AVMSYSGYDIEDALIMNKASIDRGFGRCCVTRKYATPLARSAIGSSEELRAPPVVGGGGK 802

Query: 772  AKSL-------------HSVIDSDGLPYVGQMIHPG-------EPYCSIYDKTTNSWRTN 811
                             +++ID DGLP+ G+ +  G        P         + WR  
Sbjct: 803  GGGRHQRQGGFVGRAKKYAIIDEDGLPFSGEQVVDGGILINKVSPMSDAATGQVSHWRDT 862

Query: 812  --SRKGSESVFVDYVAVDMKNSKNLPQKANIRF--RHTRNPIIGDKFSSRHGQKGVCSQL 867
              S K     +VD V      ++N  Q    +   R TR P +GDKFSSRHGQKGV   +
Sbjct: 863  PISYKNPVPSYVDRVIA----TENEDQAKIFKCITRQTRRPELGDKFSSRHGQKGVVGLI 918

Query: 868  WPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVK 927
                DMPF G  G  PDLI+NPH FPSRMT+  LLE V+ K G L G+    T F     
Sbjct: 919  VNQEDMPF-GEKGWCPDLIMNPHGFPSRMTVGKLLECVSGKAGVLDGERSYGTAFG---- 973

Query: 928  KTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRH 987
               G T    ++SL+          GF+    E + SGV G  L C IF+GP+YYQ+L+H
Sbjct: 974  ---GTTKEHMTQSLIRH--------GFHPSAKEYITSGVTGEALECYIFVGPIYYQKLKH 1022

Query: 988  MVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDY 1047
            MV DK   RSTG ++Q+TRQP +GR + GG+R GEMERD L+A+GA+ LL +RL   SD 
Sbjct: 1023 MVMDKIHARSTGPVNQLTRQPTEGRAKDGGLRLGEMERDCLVAYGASNLLLERLMLSSDV 1082

Query: 1048 HVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVF 1107
              A VC  CG +                       + +  TC  C TS+ +  + MPY  
Sbjct: 1083 FTASVCRRCGLL-----------------------SYQNGTCKLCGTSENIVDIRMPYAC 1119

Query: 1108 RYLAAELAAMNI 1119
            + L  EL AMN+
Sbjct: 1120 KLLFQELQAMNV 1131


>gi|146088594|ref|XP_001466094.1| putative RNA polymerase I second largest subunit [Leishmania infantum
            JPCM5]
 gi|134070196|emb|CAM68531.1| putative RNA polymerase I second largest subunit [Leishmania infantum
            JPCM5]
          Length = 1616

 Score =  381 bits (978), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 257/793 (32%), Positives = 406/793 (51%), Gaps = 99/793 (12%)

Query: 401  QRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPC 460
            Q +G+ V AE LNF RF    R VHRG + A +R++ VRK   E++GF+C V +PDGE C
Sbjct: 852  QTSGWVVMAEHLNFYRFFEQLRCVHRGKTIADMRSSEVRKYPCEAYGFICMVQSPDGEDC 911

Query: 461  GLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVL 520
            G+LNH++ +   ++  D+       +++R  + + + GV    +   +V      V  V 
Sbjct: 912  GVLNHLSLSTISSNSPDAAMT----AQLREIVCKAVPGVRSRATHSTVVDQLCETV-PVW 966

Query: 521  LDGRVVGVIPSSEIEKVVAHLR-------RLKVSAASVIP-------DDLEVGYV-PLSL 565
            ++G ++G +  ++  +  A LR       R +V    ++          LEV YV P + 
Sbjct: 967  MEGELLGYLSPADAVEAAARLRQRKALTLRSQVHVTGIVRRKDASPLHTLEVVYVAPKNK 1026

Query: 566  GGAYPGLYLFTSPPKFVRPVRNISLPSEESQN-----IELIGPFEQVFMEIRC--PDGGD 618
              A  GLY+F    + +RPV+ +     +        +  IG +EQ +++I     D  D
Sbjct: 1027 DPA--GLYVFYDCGRLMRPVQRLESSVRKDATHLPFPLVFIGTWEQSWLDIAAVPSDPLD 1084

Query: 619  GGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRA 678
               +      + E + T ++S+ +   P+ +HN SPRN++QC ++KQ+ G  +QAL +R 
Sbjct: 1085 AVVQLNRKYEYMEQNGTNLISLTSATIPFFEHNCSPRNLFQCGLSKQSSGTQLQALAWRK 1144

Query: 679  DQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRG 738
            + KL+    PQ  I RT     YG+D+   G NA++A+LAYTGYDM+DA+I+N ++  RG
Sbjct: 1145 EAKLFRTYCPQRYISRTLPMDYYGLDDVNLGVNAVIAILAYTGYDMDDAVIINSTAAQRG 1204

Query: 739  MCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLP------------Y 786
            M    +   + +  S  G+  D            +   + ++++GLP            +
Sbjct: 1205 MLTAGVTVAKIVTASGKGSDKDDVFVFHNLLSTGERFTAELEANGLPPKRANASLDAFSF 1264

Query: 787  VGQMIHPG-----EPYC--------------SIYDKT---TNSWRTNSRKGSESVFVDYV 824
                 +PG     + YC              S+Y+ T      WR +  KG E  +V  V
Sbjct: 1265 DRDHKYPGLRDNNDVYCCAKRVERVDPFTNKSVYEYTRHHATKWR-HFDKG-EDAWVQQV 1322

Query: 825  AVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPD 884
             + +  S   P    + FR  R P +GDKFSSRHGQKG         ++PF+  +G+ PD
Sbjct: 1323 -IPLVYSGPDPTSVLMIFRIPRPPTVGDKFSSRHGQKGTLPLHIRSHNLPFATASGITPD 1381

Query: 885  LIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDE 944
            +IINPHAFPSRMT+ M+LE + AK G++ G+F+D + ++            DE   + + 
Sbjct: 1382 VIINPHAFPSRMTVGMVLEIMTAKVGAIEGRFIDHSAWST----------VDEQPRVAEL 1431

Query: 945  LGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRS---TGTM 1001
            +GE L   G+N +G E L  G+ G E+  ++F+G   YQRLRHMVSDK+Q R+     T 
Sbjct: 1432 IGEALVKAGYNRYGREHLIDGISGEEMKADVFMGICGYQRLRHMVSDKWQARARTDAHTY 1491

Query: 1002 DQITR--QPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSV 1059
              +T+  QP+KGRKR GG+R GEMERD LL+HG + ++ DRL   SD   A +C  CGS+
Sbjct: 1492 RAVTKTGQPVKGRKRHGGVRVGEMERDGLLSHGISEVVVDRLLHVSDKTKAFICPRCGSL 1551

Query: 1060 LTATFIHPQKRAIREIGGLPPARAPKKVTCHAC-----QTSKGMETVAMPYVFRYLAAEL 1114
            L+       +R   E G           TC  C     +++  +  V +P V R  AAEL
Sbjct: 1552 LSL-----YERHATEYGTWR--------TCRFCGAGADESTDSIAMVEIPQVLRLWAAEL 1598

Query: 1115 AAMNIKITLQLGD 1127
             ++ +++ L+  +
Sbjct: 1599 TSIGVRVALKTSE 1611



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/131 (36%), Positives = 74/131 (56%), Gaps = 6/131 (4%)

Query: 66  RERF--NFGQFPVMLKTRRCHLQGADSQKLVSLK--EEAAEMGGYFILNGLERVFRSVIL 121
           +E+F  NF  FP M+K  RC L+  D+ +L   +  EE  E+GGYFI+NG ER+ R++++
Sbjct: 463 KEQFWVNFASFPEMVKGARCALRNVDA-RLDHFRALEEQKEVGGYFIMNGGERILRALLM 521

Query: 122 PKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKE 181
            + N P+++ R  F  +   ++ KAVVIRC R    +     YY   G V   F  +   
Sbjct: 522 QRCNVPINIYREKFVTQGPHFSAKAVVIRCKRPSGLTAQNYFYYTTQGEVIFSF-ARKVV 580

Query: 182 YLLPVGIVLKA 192
           + LPV ++L A
Sbjct: 581 WHLPVPLLLSA 591


>gi|348542471|ref|XP_003458708.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Oreochromis
            niloticus]
          Length = 1174

 Score =  381 bits (978), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 327/1144 (28%), Positives = 512/1144 (44%), Gaps = 143/1144 (12%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   ++   ++   G+ P+ML++  C L G   
Sbjct: 109  MPNEARLRNLTYSAPLYVDITKTIIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLSGLTD 168

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   + +D +  YT  A    
Sbjct: 169  RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYT--AECRS 223

Query: 151  CVRKD-QSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + T+ +  +  G   +     G+  +         +P+ IV +AL   +D +
Sbjct: 224  CLENSSRPTSTIWVSMMARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRD 283

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +D+           P + E VK  L E     +  +   L  IG   +    
Sbjct: 284  ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAKP 328

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     A+ V++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 329  GVTKERRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   ++ L++ +   Q  I + GK F+   LA IK       ++
Sbjct: 389  GNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQKFI-DRGKDFNL-ELA-IK-------TR 438

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   ++  L TG          Q RAG +    RL F   +S  R V+      G +  
Sbjct: 439  IISDGLKYSLATGNWGDVKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 496

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G   GL+ ++     ++                + IL  L
Sbjct: 497  KPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  +       + ++G  VG+    + E+++  LR+L+      VS  S
Sbjct: 546  EEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEVS 602

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
            +I D  E      +  G      L     K +   R+I    E   N            +
Sbjct: 603  MIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASGVV 662

Query: 599  ELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656
            E I   E+  V + +   D  + G       TH EIHP+ +L V A++ P+ DHNQSPRN
Sbjct: 663  EYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRN 722

Query: 657  MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
             YQ  M KQ MG  +     R D   + L  PQ P+V T +       E P G N+IVA+
Sbjct: 723  TYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAI 782

Query: 717  LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA---- 772
             +YTGY+ ED++I+N+S+VDRG      Y++     S  G   D+ +   +  ++     
Sbjct: 783  ASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKG--FDQEEIFEKPTRETCQGM 840

Query: 773  -KSLHSVIDSDGLPYVGQMIHPGEPY-----CSIYDKTTNSWRTNSR----------KGS 816
              +++  +D DGL   G  +  GE        ++ +       TN R          + S
Sbjct: 841  RHAIYDKLDDDGLIAPGVRVS-GEDVIIGKTVTLPENDDELDSTNRRYTKRDCSTFLRTS 899

Query: 817  ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS 876
            E+  VD V V +       +   IR R  R P IGDKF+SRHGQKG C   +   DMPF+
Sbjct: 900  ETGIVDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT 957

Query: 877  GVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTD 936
               G+ PD+IINPHA PSRMT+  L+E +  K  +  G+  DATPF ++V          
Sbjct: 958  -CEGITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVN--------- 1007

Query: 937  ESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVR 996
                 V ++  +L   G++  G EVLY+G  G +LT +IFIGP YYQRL+HMV DK   R
Sbjct: 1008 -----VQKVSNLLSEYGYHLRGNEVLYNGFTGRKLTSQIFIGPTYYQRLKHMVDDKIHSR 1062

Query: 997  STGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLC 1056
            + G +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +RL   SD +   VC+LC
Sbjct: 1063 ARGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLC 1122

Query: 1057 GSVLTA-TFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELA 1115
            G +  A T  H  +                   C  C+    +  V MPY  + L  EL 
Sbjct: 1123 GLMAIANTRTHTYE-------------------CRGCRNKTQISLVRMPYACKLLFQELM 1163

Query: 1116 AMNI 1119
            +M+I
Sbjct: 1164 SMSI 1167


>gi|345561256|gb|EGX44352.1| hypothetical protein AOL_s00193g80 [Arthrobotrys oligospora ATCC
            24927]
          Length = 1258

 Score =  380 bits (977), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 327/1143 (28%), Positives = 501/1143 (43%), Gaps = 174/1143 (15%)

Query: 68   RFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYP 127
            R   G+ P+MLK++ C L+  +   L  L E   + GGYF++NG E+V     L  Q   
Sbjct: 185  RVFIGKIPIMLKSQYCVLKEFNEDGLYGLNECPYDQGGYFVINGSEKV-----LIAQERS 239

Query: 128  MSMVRSSFRDRREGYTDKAVVIRCVRKDQS----SVTLKLYYLLNGSVRLGFWLQGKEYL 183
             + +   F+            IR   +  S    S+T+KL  +  G  R GF    +  L
Sbjct: 240  AANIVQCFKKAAPSPISYIAEIRSALEKGSRLISSLTIKL--MAKGEGRTGFGRTIRSTL 297

Query: 184  ------LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQ 237
                  +P+ +V +AL   +D +I N +  CYD              + E +K  + E  
Sbjct: 298  PYIKTDVPIAVVFRALGVVSDEDILNRV--CYDR---------NDTAMLEMLKPCIEEA- 345

Query: 238  DLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLND----NNDKFNLL 293
               +  R   L  IG+  +    G+  +     A+ +++  +  H++        K   L
Sbjct: 346  -FVIQDREVALDFIGK--RGSAQGINRDKRIKYAKEIMQKELLPHISQAEGHETRKAFFL 402

Query: 294  IFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIEN 353
             +M+ K+         +D+ D    + + L G L+    +   +  ++   K +Q  +E+
Sbjct: 403  GYMVHKMLQCALERRETDDRDHFGRKRLDLAGPLLANLFRMLFKKLVKDVFKYLQKCVES 462

Query: 354  NGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLN 413
             G+ F      N+   ++ N    I   ++  L TG    Q       +AG +    R  
Sbjct: 463  -GRDF------NVTLAIKSN---TITNGLKYSLATGNWGDQKK-PASAKAGVSQVLNRYT 511

Query: 414  FLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMT--STCR 471
            F   +S  R  +      G +    R+L    WG +CP  TP+G+ CGL+ +++  S   
Sbjct: 512  FASTLSHLRRTNTPIGRDG-KIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSYIT 570

Query: 472  VASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV-IP 530
            V S  +    I+ F + R            +  L        P V  V ++G  VGV   
Sbjct: 571  VGSPTEP---IQAFMEQRN-----------LEPLETFEPGRSPNVTKVFINGSWVGVHRD 616

Query: 531  SSEIEKVVAHLRRLKVSA--ASVIPDDLEVGYVPLSLGGAYPG-LYLFTSPPKFVRPVRN 587
            ++ + + V  LRR  V +   SVI D  +  +   S  G     LY+  + P  +R    
Sbjct: 617  AASLYRTVLSLRRTNVISHEVSVIRDIRDREFKIFSDAGRVTRPLYVIDNDPGSLRKGEL 676

Query: 588  I-------SLPSEESQNIELIGPFEQVF-------------------------------- 608
            +        L + + Q  E + P E+ +                                
Sbjct: 677  VLQKYHIEKLENAKFQTAEDLAPGEEKYGWNGLLNDGCVEYVDAEEEETIMISMSPEDLE 736

Query: 609  --------MEIRCPDGGDGGRR-------NAFPATHEEIHPTGMLSVVANLTPYSDHNQS 653
                     EI   D GD  +R        A   TH EIHP+ +L + A++ P+ DHNQS
Sbjct: 737  ISRQVQAGYEIPVDDSGDMAKRVKAKVNPYAHTWTHCEIHPSMILGICASIIPFPDHNQS 796

Query: 654  PRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAI 713
            PRN YQ  M KQ MG  +     R D     L  PQ P+  T +       E P G NAI
Sbjct: 797  PRNTYQSAMGKQAMGIFLTNFNERMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 856

Query: 714  VAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDG-NKVDRGQKLFRRN--K 770
            V ++ Y+GY+ ED++I+N+SS+DRG+     Y+         G   ++  +K  R N  +
Sbjct: 857  VGIMCYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYMDSEKRIGMTTIEEFEKPMRNNTLR 916

Query: 771  DAKSLHSVIDSDGL--PYV---GQMIHPGEPYCSIYDKTTNSWRTNSR---------KGS 816
                 +  +D DGL  P V   G+ I  G+      D      RT +          + +
Sbjct: 917  LKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAPIPADTEELGQRTKNHTKRDVSTPLRST 976

Query: 817  ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS 876
            E+  VD V +   N++ + +   +R R T+ P IGDKF+SRHGQKG     +   DMPF+
Sbjct: 977  ENGIVDQVML-TTNAEGM-RFVKVRMRTTKVPQIGDKFASRHGQKGTIGITYRHEDMPFT 1034

Query: 877  GVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTD 936
               G+ PDLIINPHA PSRMTIA L+E   +K  SL G   DATPF              
Sbjct: 1035 A-EGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPF-------------- 1079

Query: 937  ESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVR 996
             ++  V+ +  +LR  G+   G EV+Y+G  G +L C++F+GP YYQRLRHMV DK   R
Sbjct: 1080 -TEVTVENVSRLLREHGYQSRGFEVMYNGHTGKKLVCQVFLGPTYYQRLRHMVDDKIHAR 1138

Query: 997  STGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLC 1056
            + G +  +TRQP++GR R GG+RFGEMERD +++HGA+  L +RL   SD     VC +C
Sbjct: 1139 ARGPVQILTRQPVEGRARDGGLRFGEMERDCMISHGASAFLKERLFEVSDAFRVHVCDIC 1198

Query: 1057 GSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAA 1116
            G +   T I   K+ + E              C  C+    +  + +PY  + L  EL A
Sbjct: 1199 GLM---TPIANLKKNLFE--------------CRPCRNKTKISQIHLPYAAKLLFQELTA 1241

Query: 1117 MNI 1119
            MNI
Sbjct: 1242 MNI 1244


>gi|124028419|ref|YP_001013739.1| DNA-directed RNA polymerase subunit B [Hyperthermus butylicus DSM
            5456]
 gi|123979113|gb|ABM81394.1| DNA-directed RNA polymerase subunit B [Hyperthermus butylicus DSM
            5456]
          Length = 1138

 Score =  380 bits (977), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 337/1157 (29%), Positives = 523/1157 (45%), Gaps = 178/1157 (15%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTR-----RCHLQGAD-- 89
             CR   ++Y   + A V    ++ G     E    G  PVML+++     RC  +G    
Sbjct: 86   ECRIRDLTYAAPIKAKVVI--VENGIEREAEEIILGFLPVMLRSKADPLARCMYEGKSWK 143

Query: 90   --SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAV 147
               QKL+   E+  + GGYFI+NG ERV   VI   Q     +V  +    R G T  A+
Sbjct: 144  ECEQKLIEAGEDPRDPGGYFIINGSERVI--VIQEDQALNRILVGKA----RAG-TASAL 196

Query: 148  VIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTC 207
                V    + V  ++    +    L   +      +P  I+++AL   +D +I   L  
Sbjct: 197  YTAKVISAHAGVRYQVILDYHKDGTLHVSMSRALSKIPFVILMRALGLESDRDIV--LAV 254

Query: 208  CYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQS--E 265
              D + ++               +I +  Q  ++ T    L ++G  F+   +GL    E
Sbjct: 255  SPDPQIQQ--------------MLIPSLEQARAINTVEDALDYVGSRFR---EGLAKPRE 297

Query: 266  SYYAVAETVIRDYIFVHLNDN-NDKFNLLIFMLQ---KLFSLVDHTSVSDNPDSLQNQEI 321
                VAE ++   +F H+  +  D+    +F+ Q   KL   V      D+ D   N+ +
Sbjct: 298  QRIRVAERILDTILFPHIGTSPKDRIRKALFLGQMAAKLLEYVAGRRKEDDKDHYANKRV 357

Query: 322  LLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTS 381
            LL G LI +  +                 I      +D      I++ +EK  ++    S
Sbjct: 358  LLAGDLIAMVFR-----------------IAMRALAYD------IRQQLEKLRARGRHIS 394

Query: 382  IETMLK----TGRL--ATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
            +  +++    T RL  A  TG    QR G +   +R N+L  +S  R V    S    RT
Sbjct: 395  LRMIIRSDIITNRLREALATGNWPGQRTGVSQILDRTNWLSMLSHLRRVVSQLS----RT 450

Query: 436  T---SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSI 492
                  R +    WG +CP  TP+G  CGL+ ++     V++  D +    D  K+  S+
Sbjct: 451  QPHFEARDVHGTQWGRICPFETPEGPNCGLVKNLALMAYVSAGVDDK----DVEKLLYSM 506

Query: 493  LRVLIGV-GMIPSLPKLVKSG--PPAVLS---VLLDGRVVGVIPSSEIEKVVAHLRRLK- 545
                 GV   +    ++ K G  PP  +    V L+GR++G  P  E  K+   LR+L+ 
Sbjct: 507  -----GVRDAVELFEEVRKQGYYPPEYIKWSKVFLNGRLIGYHPDGE--KLAEELRKLRR 559

Query: 546  -------VSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNI 598
                   VS +    + +   Y+    G     +++  S     RP     L   E +  
Sbjct: 560  SGKLHYEVSVSVYRTETINEVYINTDPGRIMRPVFVVESGKLLYRPEHAEKLRKGEWRFS 619

Query: 599  ELIGPFEQVFMEIRCPDGGDGGRRNAFPA----------THEEIHPTGMLSVVANLTPYS 648
            +L+      F++    +       N + A          TH EI P G+  V A+  PY+
Sbjct: 620  DLVRNGIVEFLDAEEEE-------NTYIALNPEDLTPEHTHMEIWPAGIFGVTASTIPYA 672

Query: 649  DHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPT 708
            +HNQSPRN YQ  MAKQ +G      + R D + + L  P+ P+V+T      G ++ P 
Sbjct: 673  EHNQSPRNTYQAAMAKQALGLYAANFQIRVDTRSHLLHYPEKPLVQTRALELMGYNDRPA 732

Query: 709  GTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG---QIYQTE----------TIDLSDD 755
            G N +VAV+++TGY++EDA+I+NKSS+DRG+      ++Y TE           I++ + 
Sbjct: 733  GQNMVVAVMSFTGYNIEDAVIMNKSSIDRGLARSTFFRLYATEERRYPGGLSDKIEIPEA 792

Query: 756  GNKVDRGQKLFRR-NKDAKSLHSVIDSDGLPYVGQMIHPG--EPYCSIYDKTTNSWRTN- 811
              +  +  +++++ + D      V    G   +G+   P   E Y      T     T+ 
Sbjct: 793  NVEGSKPPEMYKKLDADGIISPEVEVKGGEVLIGKTSPPRFMEEYREFGTVTVRKRDTSV 852

Query: 812  SRKGSESVFVDYVAVDMKNSKNLP--QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWP 869
            + +  E   VD V +    ++N+   +   +R R  R P +GDKF+SRHGQKGV   L P
Sbjct: 853  TMRHGEKGVVDTVII----TENIEGYKLVKVRVRDQRIPELGDKFASRHGQKGVIGMLIP 908

Query: 870  DIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKT 929
              DMPF+   G+ PDLIINPHAFPSRMT+  L E++A K  +++ +F+D TPFA      
Sbjct: 909  QYDMPFTE-DGITPDLIINPHAFPSRMTLGQLFETIAGKYAAIYARFVDGTPFAK----- 962

Query: 930  NGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMV 989
                     +S+ +   E+L+T G+   G E++Y G  G  +   I IG VYYQ+L HMV
Sbjct: 963  ---------ESIENLRIELLKT-GYAPDGTEIMYDGRTGEMIRTPILIGLVYYQKLHHMV 1012

Query: 990  SDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHV 1049
            +DK   R+ G +  +TRQP +GR R GG+RFGEMERD L+ HGAA LL +R+   SD +V
Sbjct: 1013 ADKIHARARGPVQVLTRQPTEGRAREGGLRFGEMERDCLVGHGAAMLLRERMLESSDRYV 1072

Query: 1050 ADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRY 1109
              VC LCG +  A F                 R  +   C        +  V +PY F+ 
Sbjct: 1073 LYVCELCGHI--AWF----------------DRNKRGYICPVHGDKGKIAAVIVPYAFKL 1114

Query: 1110 LAAELAAMNIKITLQLG 1126
            L  EL +M I   L+L 
Sbjct: 1115 LLQELMSMCIMPRLKLA 1131


>gi|398016410|ref|XP_003861393.1| RNA polymerase I second largest subunit, putative [Leishmania
            donovani]
 gi|322499619|emb|CBZ34693.1| RNA polymerase I second largest subunit, putative [Leishmania
            donovani]
          Length = 1616

 Score =  380 bits (977), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 257/793 (32%), Positives = 406/793 (51%), Gaps = 99/793 (12%)

Query: 401  QRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPC 460
            Q +G+ V AE LNF RF    R VHRG + A +R++ VRK   E++GF+C V +PDGE C
Sbjct: 852  QTSGWVVMAEHLNFYRFFEQLRCVHRGKTIADMRSSEVRKYPCEAYGFICMVQSPDGEDC 911

Query: 461  GLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVL 520
            G+LNH++ +   ++  D+       +++R  + + + GV    +   +V      V  V 
Sbjct: 912  GVLNHLSLSTISSNSPDAAMT----AQLREIVCKAVPGVRSRATHSTVVDQLCETV-PVW 966

Query: 521  LDGRVVGVIPSSEIEKVVAHLR-------RLKVSAASVIP-------DDLEVGYV-PLSL 565
            ++G ++G +  ++  +  A LR       R +V    ++          LEV YV P + 
Sbjct: 967  MEGELLGYLSPADAVEAAARLRQRKALTLRSQVHVTGIVRRKDASPLHTLEVVYVAPKNK 1026

Query: 566  GGAYPGLYLFTSPPKFVRPVRNISLPSEESQN-----IELIGPFEQVFMEIRC--PDGGD 618
              A  GLY+F    + +RPV+ +     +        +  IG +EQ +++I     D  D
Sbjct: 1027 DPA--GLYVFFDCGRLMRPVQRLESSVRKDATHLPFPLVFIGTWEQSWLDIAAVPSDPLD 1084

Query: 619  GGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRA 678
               +      + E + T ++S+ +   P+ +HN SPRN++QC ++KQ+ G  +QAL +R 
Sbjct: 1085 AVVQLNRKYEYMEQNGTNLISLTSATIPFFEHNCSPRNLFQCGLSKQSSGTQLQALAWRK 1144

Query: 679  DQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRG 738
            + KL+    PQ  I RT     YG+D+   G NA++A+LAYTGYDM+DA+I+N ++  RG
Sbjct: 1145 EAKLFRTYCPQRYISRTLPMDYYGLDDVNLGVNAVIAILAYTGYDMDDAVIINSTAAQRG 1204

Query: 739  MCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLP------------Y 786
            M    +   + +  S  G+  D            +   + ++++GLP            +
Sbjct: 1205 MLTAGVTVAKIVTASGKGSDKDDVFVFHNLLSTGERFTAELEANGLPPKRANASLDAFSF 1264

Query: 787  VGQMIHPG-----EPYC--------------SIYDKT---TNSWRTNSRKGSESVFVDYV 824
                 +PG     + YC              S+Y+ T      WR +  KG E  +V  V
Sbjct: 1265 DRDHKYPGLRDNNDVYCCAKRVERVDPFTNKSVYEYTRHHATKWR-HFDKG-EDAWVQQV 1322

Query: 825  AVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPD 884
             + +  S   P    + FR  R P +GDKFSSRHGQKG         ++PF+  +G+ PD
Sbjct: 1323 -IPLVYSGPDPTSVLMIFRIPRPPTVGDKFSSRHGQKGTLPLHIRSHNLPFATASGITPD 1381

Query: 885  LIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDE 944
            +IINPHAFPSRMT+ M+LE + AK G++ G+F+D + ++            DE   + + 
Sbjct: 1382 VIINPHAFPSRMTVGMVLEIMTAKVGAIEGRFIDHSAWST----------VDEQPRVAEL 1431

Query: 945  LGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRS---TGTM 1001
            +GE L   G+N +G E L  G+ G E+  ++F+G   YQRLRHMVSDK+Q R+     T 
Sbjct: 1432 IGEALVKAGYNRYGREHLIDGISGEEMKADVFMGICGYQRLRHMVSDKWQARARTDAHTY 1491

Query: 1002 DQITR--QPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSV 1059
              +T+  QP+KGRKR GG+R GEMERD LL+HG + ++ DRL   SD   A +C  CGS+
Sbjct: 1492 RAVTKTGQPVKGRKRHGGVRVGEMERDGLLSHGISEVVVDRLLHVSDKTKAFICPRCGSL 1551

Query: 1060 LTATFIHPQKRAIREIGGLPPARAPKKVTCHAC-----QTSKGMETVAMPYVFRYLAAEL 1114
            L+       +R   E G           TC  C     +++  +  V +P V R  AAEL
Sbjct: 1552 LSL-----YERHATEYGTWR--------TCRFCGAGADESTDSIAMVEIPQVLRLWAAEL 1598

Query: 1115 AAMNIKITLQLGD 1127
             ++ +++ L+  +
Sbjct: 1599 TSIGVRVALKTSE 1611



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/131 (36%), Positives = 74/131 (56%), Gaps = 6/131 (4%)

Query: 66  RERF--NFGQFPVMLKTRRCHLQGADSQKLVSLK--EEAAEMGGYFILNGLERVFRSVIL 121
           +E+F  NF  FP M+K  RC L+  D+ +L   +  EE  E+GGYFI+NG ER+ R++++
Sbjct: 463 KEQFWVNFASFPEMVKGARCALRNVDA-RLDHFRALEEQKEVGGYFIMNGGERILRALLM 521

Query: 122 PKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKE 181
            + N P+++ R  F  +   ++ KAVVIRC R    +     YY   G V   F  +   
Sbjct: 522 QRCNVPINIYREKFVTQGPHFSAKAVVIRCKRPSGLTAQNYFYYTTQGEVIFSF-ARKVV 580

Query: 182 YLLPVGIVLKA 192
           + LPV ++L A
Sbjct: 581 WHLPVPLLLSA 591


>gi|324120620|dbj|BAJ78701.1| RNA polymerase II second largest subunit [Galloisiana yuasai]
          Length = 1175

 Score =  380 bits (977), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 326/1156 (28%), Positives = 516/1156 (44%), Gaps = 166/1156 (14%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    L      V    ++   G+ P+ML++  C L G   
Sbjct: 109  MPNEARLRNLTYSAPLYVDITKTILKENEEPVETQHQKTFIGKIPIMLRSTYCLLSGLTD 168

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  +  KA +  
Sbjct: 169  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKFAF--KAEIRS 223

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  +  G   +     G+  +         +P+ IV +AL    D +
Sbjct: 224  CLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 283

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +D+           P + E VK  L E     +  +   L  IG   +    
Sbjct: 284  ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RGARP 328

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     A  +++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 329  GVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   ++ +++ +   Q  I + GK F+   LA IK       +K
Sbjct: 389  GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFI-DRGKDFNL-ELA-IK-------TK 438

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   +   L TG    Q     Q RAG +    RL F   +S  R V+      G +  
Sbjct: 439  IITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 496

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G   GL+ ++         Y S G+        + IL  L
Sbjct: 497  KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMA-----YISVGS------QPSPILEFL 545

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  S       + ++G  VG+    + E+++A LR+L+      VS  S
Sbjct: 546  EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVSEVS 602

Query: 551  VIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------------RNISLPSEESQ 596
            +I D  D E+               ++T   +  RP+            R+I +  E   
Sbjct: 603  MIRDIRDREI--------------RIYTDAGRICRPLLIVDGGNLLLKKRHIDMLKEREY 648

Query: 597  N------------IELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVV 641
            N            +E I   E+   M    PD     +  A+  T  H EIHP  +L V 
Sbjct: 649  NNYGWQVLVASGVVEYIDTLEEETVMIAMSPDDLRQDKEYAYCTTYTHCEIHPAMILGVC 708

Query: 642  ANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKY 701
            A++ P+ DHNQSPRN YQ  M KQ MG  +     R D   + L  P  P+V T +    
Sbjct: 709  ASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYL 768

Query: 702  GIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT----ETIDLSDDGN 757
               E P G N+IVA+L YTGY+ ED++I+N S+V+RG      +++    E+  + D   
Sbjct: 769  RFRELPAGINSIVAILCYTGYNQEDSVIMNASAVERGFFRSVFFRSYKDAESKRIGDQEE 828

Query: 758  KVDRGQKLFRRNKDAKSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTN 806
            + ++  +L  +     +L+  +D DG+             +G+ I   E    +   T  
Sbjct: 829  QFEKPTRLTCQGM-RNALYDKLDDDGIISPGIRVSGDDVVIGKTITLPENDDELEGATKR 887

Query: 807  SWRTNSR---KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGV 863
              + ++    + SE+  VD V + + NS+   +   IR R  R P IGDKF+SRHGQKG 
Sbjct: 888  YTKRDASTFLRNSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGT 945

Query: 864  CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFA 923
            C   +   DMPF+   G+ PD+IINPHA PSRMTI  L+E +  K  S  G+  DATPF 
Sbjct: 946  CGIQYRQEDMPFT-CEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSSNKGEIGDATPFN 1004

Query: 924  NSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQ 983
            ++V               V ++  +L+  G+   G E++++G  G +++ +IF+GP YYQ
Sbjct: 1005 DAVN--------------VQKISTLLQEYGYQLRGNEIMFNGHTGRKISAQIFLGPTYYQ 1050

Query: 984  RLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHT 1043
            RL+HMV DK   R+ G +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +RL  
Sbjct: 1051 RLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFE 1110

Query: 1044 CSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAM 1103
             SD +   +C+ CG +  A   +                      C  C+    +  V +
Sbjct: 1111 VSDPYRIHICNFCGIIAIANMRN------------------NTFECKGCKNKTQISQVKL 1152

Query: 1104 PYVFRYLAAELAAMNI 1119
            PY  + L  EL AMNI
Sbjct: 1153 PYAAKLLFQELMAMNI 1168


>gi|324120646|dbj|BAJ78714.1| RNA polymerase II second largest subunit [Gynaikothrips ficorum]
          Length = 1150

 Score =  380 bits (977), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 321/1141 (28%), Positives = 511/1141 (44%), Gaps = 136/1141 (11%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVV---RERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   V     +   G+ P+ML++  C L G   
Sbjct: 84   MPNEARLRNLTYSAPLYVDITKTIIREGEDQVVTQNPKTFIGKIPIMLRSTYCLLNGLTD 143

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   + +D +  Y  K+ +  
Sbjct: 144  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAMKDGKFAY--KSEIRS 198

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  +  G   +     G+  +         +P+ IV +AL    D +
Sbjct: 199  CLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 258

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +D+           P + E VK  L E     +  +   L  IG   +    
Sbjct: 259  ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RGARP 303

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     A+ +++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 304  GVTKEKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 363

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   ++ +++ +   Q  I+  GK F+   LA IK       +K
Sbjct: 364  GNKRLDLAGPLLAFLFRALFKNLMKEVRMYAQKFIDR-GKDFNL-ELA-IK-------TK 413

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   +   L TG    Q    +  RAG +    RL F   +S  R V+      G +  
Sbjct: 414  IITDGLRYSLATGNWGDQKKAHMA-RAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 471

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G   GL+ ++     ++                + IL  L
Sbjct: 472  KPRQLHNTLWGMVCPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 520

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  S       + ++G  VG+    + E+++A LR+L+      VS  S
Sbjct: 521  EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVSEVS 577

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
            +I D  +      +  G      L     + +   RNI    E   N            +
Sbjct: 578  MIRDIRDREIRIYTDAGRICRPLLIVENGQLLLKKRNIDQLKERDYNNYGWQMLVASGVV 637

Query: 599  ELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQSPR 655
            E I   E+   M    PD  +  +  A+  T  H EIHP  +L V A++ P+ DHNQSPR
Sbjct: 638  EYIDTLEEETVMIAMSPDDLNQDKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPR 697

Query: 656  NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
            N YQ  M KQ MG  +     R D   + L  P  P+V T +       E P G N+IVA
Sbjct: 698  NTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVA 757

Query: 716  VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVDRGQKLFRRNKDA-- 772
            +L YTGY+ ED++ILN ++V+RG      Y++ +  +    G++ ++ +K  R N     
Sbjct: 758  ILCYTGYNQEDSVILNATAVERGFFRSVFYRSYKDAESKRIGDQEEQFEKPNRSNCQGMR 817

Query: 773  KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSR---KGSES 818
             +L+  +D DG+             +G+ I   E    +   T    + ++    + SE+
Sbjct: 818  NALYDKLDDDGIIAPGLRVSGDDVVIGKTITLPETDDELEGTTRRHTKRDASTFLRNSET 877

Query: 819  VFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGV 878
              VD V + + NS+   +   IR R  R P IGDKF+SRHGQKG C   +   DMPF+  
Sbjct: 878  GIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT-C 934

Query: 879  TGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDES 938
             G+ PD+IINPHA PSRMTI  L+E +  K  S  G+  DATPF ++V            
Sbjct: 935  EGLTPDIIINPHAIPSRMTIGHLIECLQGKVSSNKGEIGDATPFNDAVN----------- 983

Query: 939  KSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRST 998
               V ++  +L+  G+   G EV+Y+G  G ++  ++F+GP YYQRL+HMV DK   R+ 
Sbjct: 984  ---VQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRAR 1040

Query: 999  GTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGS 1058
            G +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +RL   SD +   VC+ CG 
Sbjct: 1041 GPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGL 1100

Query: 1059 VLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMN 1118
            +  A   +                      C  C+    +  V +PY  + L  EL +M+
Sbjct: 1101 IAIANLRN------------------NTFECKGCKNKTQISQVRLPYAAKLLFQELMSMS 1142

Query: 1119 I 1119
            I
Sbjct: 1143 I 1143


>gi|324120638|dbj|BAJ78710.1| RNA polymerase II second largest subunit [Tenodera aridifolia]
          Length = 1175

 Score =  380 bits (977), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 325/1155 (28%), Positives = 513/1155 (44%), Gaps = 164/1155 (14%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   +    ++   G+ P+ML++  C L G   
Sbjct: 109  MPNEARLRNLTYSAPLYVDITKTIVKDGEEPIETQHQKTFIGKIPIMLRSTYCLLSGLTD 168

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  Y  KA +  
Sbjct: 169  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKFAY--KAEIRS 223

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  +  G   +     G+  +         +P+ IV +AL    D +
Sbjct: 224  CLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 283

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +D+           P + E VK  L E     +  +   L  IG   +    
Sbjct: 284  ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNIALNFIGA--RGARP 328

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     A  +++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 329  GVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   ++ +++ +   Q  I + GK F+   LA IK       +K
Sbjct: 389  GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFI-DKGKDFNL-ELA-IK-------TK 438

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   +   L TG    Q    +  RAG +    RL F   +S  R V+      G +  
Sbjct: 439  IITDGLRYSLATGNWGDQKKAHMA-RAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 496

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G   GL+ ++     ++                + IL  L
Sbjct: 497  KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  S       + ++G  VG+    + E+++A LR+L+      VS  S
Sbjct: 546  EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVSEVS 602

Query: 551  VIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------------RNISLPSEESQ 596
            +I D  D E+               ++T   +  RP+            R+I +  E   
Sbjct: 603  MIRDIRDREI--------------RIYTDAGRICRPLLIVEGGSLLLKKRHIDMLKEREY 648

Query: 597  N------------IELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVV 641
            N            +E I   E+   M    PD     +  A+  T  H EIHP  +L V 
Sbjct: 649  NNYGWQVLVASGVVEYIDTLEEETVMISMSPDDLRQDKEYAYCTTYTHCEIHPAMILGVC 708

Query: 642  ANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKY 701
            A++ P+ DHNQSPRN YQ  M KQ MG  +     R D   + L  P  P+V T +    
Sbjct: 709  ASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYL 768

Query: 702  GIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVD 760
               E P G N+IVA+L YTGY+ ED++I+N S+V+RG      +++ +  +    G++ +
Sbjct: 769  RFRELPAGINSIVAILCYTGYNQEDSVIMNASAVERGFFRSVFFRSYKDAESKRIGDQEE 828

Query: 761  RGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR- 813
            + +K  R+       +L+  +D DG+   G  +   +       ++ D       T  R 
Sbjct: 829  QFEKPTRQTCQGMRNALYDKLDDDGIISPGIRVSGDDVVIGKTITLPDNEDELEGTTKRF 888

Query: 814  ---------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVC 864
                     + SE+  VD V + + NS+   +   IR R  R P IGDKF+SRHGQKG C
Sbjct: 889  TKRDASTFLRNSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTC 946

Query: 865  SQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFAN 924
               +   DMPF+   G+ PD+IINPHA PSRMTI  L+E +  K  S  G+  DATPF +
Sbjct: 947  GIQYRQEDMPFT-CEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSSNKGEIGDATPFND 1005

Query: 925  SVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQR 984
            +V               V ++  +L+  G+   G EV+Y+G  G ++  +IF+GP YYQR
Sbjct: 1006 AVN--------------VQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQIFLGPTYYQR 1051

Query: 985  LRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTC 1044
            L+HMV DK   R+ G +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +RL   
Sbjct: 1052 LKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEV 1111

Query: 1045 SDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMP 1104
            SD +   VC+ CG +  A   +                      C  C+    +  V +P
Sbjct: 1112 SDPYRIHVCNFCGLIAIANLRN------------------NTFECKGCKNKTQISQVRLP 1153

Query: 1105 YVFRYLAAELAAMNI 1119
            Y  + L  EL AMNI
Sbjct: 1154 YAAKLLFQELMAMNI 1168


>gi|324120604|dbj|BAJ78693.1| RNA polymerase II second largest subunit [Thermobia domestica]
          Length = 1175

 Score =  380 bits (977), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 321/1145 (28%), Positives = 509/1145 (44%), Gaps = 144/1145 (12%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   V    ++   G+ P+ML++  C L G   
Sbjct: 109  MPNEARLRNLTYSAPLYVDITKTVIKEGEDPVETQHQKTFIGKIPIMLRSTYCLLNGLTD 168

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  Y  KA +  
Sbjct: 169  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDSKYAY--KAEIRS 223

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  +  G   +     G+  +         +P+ IV +AL    D +
Sbjct: 224  CLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 283

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +D+           P + E VK  L E     +  +   L  IG   +    
Sbjct: 284  ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RGARP 328

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     A+ +++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 329  GVTKEKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   ++ +++ +   Q  I + GK F+   LA IK       +K
Sbjct: 389  GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFI-DRGKDFNL-ELA-IK-------TK 438

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   ++  L TG    Q    L  RAG +    RL F   +S  R V+      G +  
Sbjct: 439  IITDGLKYSLATGNWGDQKKAHLA-RAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 496

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G   GL+ ++     ++                + IL  L
Sbjct: 497  KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  S       + ++G  VG+    + E+++A LR+L+      VS  S
Sbjct: 546  EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVSEVS 602

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
            +I D  +      +  G      L     K +   R+I +  E   N            +
Sbjct: 603  MIRDIRDREIRIYTDAGRICRPLLIVDNGKLLLKKRHIDMLKEREYNNYGWQVLVASGVV 662

Query: 599  ELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQSPR 655
            E I   E+   M    PD     +  A+  T  H EIHP  +L V A++ P+ DHNQSPR
Sbjct: 663  EYIDTLEEETVMIAMSPDDLRQDKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPR 722

Query: 656  NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
            N YQ  M KQ MG  +     R D   + L  P  P+V T +       E P G N++VA
Sbjct: 723  NTYQSAMGKQAMGVYITNYHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSVVA 782

Query: 716  VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNK--VDRGQKLFRRNKDA- 772
            +  YTGY+ ED++I+N S+V+RG      +++      D  +K   D+ ++  R  ++  
Sbjct: 783  IACYTGYNQEDSVIMNASAVERGFFRSVFFRS----YKDAESKRFCDQEEQFERPTRNTC 838

Query: 773  ----KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------K 814
                 +++  +D DG+   G  +   +       ++ D       T  R          +
Sbjct: 839  QGMRNAIYDKLDDDGIIAPGVRVSGDDVVIGKTITLPDNEDELEGTTKRYTKRDASTFLR 898

Query: 815  GSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMP 874
             SE+  VD V + + NS+   +   IR R  R P IGDKF+SRHGQKG C   +   DMP
Sbjct: 899  NSETGIVDQVMITL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMP 956

Query: 875  FSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTG 934
            F+   G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF ++V        
Sbjct: 957  FT-CEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVN------- 1008

Query: 935  TDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQ 994
                   V ++  +L+  G+   G EV+Y+G  G ++  +IF+GP YYQRL+HMV DK  
Sbjct: 1009 -------VQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIH 1061

Query: 995  VRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCS 1054
             R+ G +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +RL   SD +   VC+
Sbjct: 1062 SRARGPLQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCN 1121

Query: 1055 LCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAEL 1114
             CG +  A   +                      C  C+    +  V +PY  + L  EL
Sbjct: 1122 FCGLIAIANLRN------------------STFECKGCKNKTQISQVRLPYAAKLLFQEL 1163

Query: 1115 AAMNI 1119
             +MNI
Sbjct: 1164 MSMNI 1168


>gi|324120668|dbj|BAJ78725.1| RNA polymerase II second largest subunit [Stichotrema asahinai]
          Length = 1173

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 320/1140 (28%), Positives = 518/1140 (45%), Gaps = 140/1140 (12%)

Query: 36   DHCRQAKISYTGKLMADVEFQYL-DAGSPVVR--ERFNFGQFPVMLKTRRCHLQGADSQK 92
            +  R   ++Y+  L  D+    + D   P+ +   +   G+ P+ML++  C L G   + 
Sbjct: 112  NEARLRNLTYSAPLYVDISKTIIRDGEDPIYKPHTKTFIGKIPIMLRSTYCLLNGMTDRD 171

Query: 93   LVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCV 152
            L  L E   + G YFI+NG E+V   +I  ++    ++   + +D +  Y  K  +  C+
Sbjct: 172  LTELNECPFDPGAYFIINGSEKV---LIAQEKMATNTVYVFAMKDGKFAY--KTEIRSCL 226

Query: 153  R-KDQSSVTLKLYYLLNGSV---------RLGFWLQGKEYLLPVGIVLKALVDTNDLEIF 202
                + + TL +  L  G           R+   L   +  +P+ +V +AL    D +I 
Sbjct: 227  EHSSRPTSTLWVNMLARGGQVGKRNSVGQRIIAILPYIKQEIPIMVVFRALGFVADRDIL 286

Query: 203  NHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEH-FQPVIDG 261
             H+   +++           P + E VK  L E     +  +   L  IG    +P   G
Sbjct: 287  EHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNIALNFIGARGARP---G 330

Query: 262  LQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQ 317
            +  E     A+ +++  +  H+  ++     K   L +M+ +L          D+ D   
Sbjct: 331  VTKEKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYG 390

Query: 318  NQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQ 377
            N+ + L G L++   +   ++ L K  +L   +  + GK F      NI+  ++   ++ 
Sbjct: 391  NKRLDLGGPLLSFLFRGMFKN-LIKEVRLYAQKFVDRGKDF------NIELAVK---TRI 440

Query: 378  IGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS 437
            I   +   L TG  A Q     Q RAG +    RL F   +S  R V+      G +   
Sbjct: 441  ISDGLRYSLATGNWADQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLAK 498

Query: 438  VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLI 497
             R+L    WG +CP  TP+G   GL+ ++     ++                + IL  L 
Sbjct: 499  PRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFLE 547

Query: 498  GVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAASV 551
               M  +L ++  S       + ++G  VG+    E+  +++ LR+L+      VS  S+
Sbjct: 548  EWSM-ENLEEIAPSSIADSTKIFVNGCWVGIHRDPEL--LMSTLRKLRRQMDIIVSEVSM 604

Query: 552  IPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEE---------SQNIEL 600
            + D  D E+  +    G     L +  S  + +   ++I L  +          S  +E 
Sbjct: 605  VRDIRDREI-RIYTDAGRICRPLLIVDSEGRLLMKKKDIDLLKDRDYGWQSLVSSGVVEY 663

Query: 601  IGPFEQ-VFMEIRCPDGGDGGRRNAFPA--THEEIHPTGMLSVVANLTPYSDHNQSPRNM 657
            I   E+   M    P+     R + + A  TH EIHP+ +L V A++ P+ DHNQSPRN 
Sbjct: 664  IDTLEEETIMIAMTPNDLRQNRDDTYCANFTHCEIHPSMILGVCASIIPFPDHNQSPRNT 723

Query: 658  YQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVL 717
            YQ  M KQ MG  +     R D   + L  P  P+V T +       E P G N+IVA+L
Sbjct: 724  YQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAIL 783

Query: 718  AYTGYDMEDAMILNKSSVDRGMCHGQIYQT----ETIDLSDDGNKVDRGQKLFRRNKDAK 773
             YTGY+ ED++I+N S+V+RG      Y++    E   L D   + ++  +L  +     
Sbjct: 784  CYTGYNQEDSIIINASAVERGFFRSVFYRSYRDAEVRRLGDQDEQFEKPNRLTCQGM-RH 842

Query: 774  SLHSVIDSDGLPYVG--------------QMIHPGEPYCSIYDKTTNSWRTNSRKGSESV 819
            +++  +D DG+   G               ++   +   S+  K T    +   + SE+ 
Sbjct: 843  AIYDKLDEDGIIAPGVRVSGDDVVIGKTITLMENEDELESVTKKYTKRDASTFLRRSETG 902

Query: 820  FVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVT 879
             VD V + + N++   +   IR R  R P IGDKF+SRHGQKG C   +   DMPF+   
Sbjct: 903  VVDQVMLTL-NAEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTS-E 959

Query: 880  GMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESK 939
            G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF ++V             
Sbjct: 960  GITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVN------------ 1007

Query: 940  SLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTG 999
              V ++  +L+  G+N  G E++Y+G  G ++  +IFIGP YYQRL+HMV DK   R+ G
Sbjct: 1008 --VQKISHLLQEYGYNLRGNEIMYNGYTGRKINAQIFIGPTYYQRLKHMVDDKIHSRARG 1065

Query: 1000 TMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSV 1059
             +  + RQP++GR R GG+RFGEMERD  ++HGAA  L +RL T SD +   VC+LCG +
Sbjct: 1066 PVQILVRQPLEGRARDGGLRFGEMERDCQISHGAAQFLRERLFTVSDPYRIHVCNLCGLI 1125

Query: 1060 LTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
            + A   +                      C +C+    +  V +PY  + L  EL AM I
Sbjct: 1126 VIANLRN------------------NTFECKSCKNKTQISQVHLPYASKLLMQELMAMLI 1167


>gi|255083755|ref|XP_002508452.1| predicted protein [Micromonas sp. RCC299]
 gi|226523729|gb|ACO69710.1| predicted protein [Micromonas sp. RCC299]
          Length = 1159

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 341/1232 (27%), Positives = 524/1232 (42%), Gaps = 231/1232 (18%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMF--------------------------------- 35
            F  +R LVR HI+SF+Y+++E + ++                                  
Sbjct: 47   FLKVRGLVRQHIDSFNYLINEEIKKIIAAKANEKVTCDTDPNFYLKYTNIQVGKPSVEED 106

Query: 36   --------DHCRQAKISYTGKLMADVEFQYLDAGSPVVRER-------FNFGQFPVMLKT 80
                      CR   ++Y   +  DVE+     G  +V             G+ P+ML++
Sbjct: 107  FIVEEITPQQCRLRDMTYAAPVTVDVEYT---RGKEIVTNTSKNGVGGVTIGRIPLMLRS 163

Query: 81   RRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRRE 140
             RC L G   ++L  L E   + GGYF++ G E+V   +++ +Q   +S  R       +
Sbjct: 164  SRCILTGKSEEELARLGECPLDPGGYFVVKGTEKV---ILIQEQ---LSKNRIIIDIDNK 217

Query: 141  GYTDKAVVIRC-VRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--------LPVGIVLK 191
            G    +V      RK ++++ +K                GK YL        +P+ + LK
Sbjct: 218  GEVGASVTSSTHERKSKTNIVVK---------------HGKLYLRHNTFTDEIPIMVALK 262

Query: 192  ALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHI 251
            A+   +D E+   +             A  S L+       L E   L++ T+ Q L++ 
Sbjct: 263  AMGCESDQEVVQMV---------GPDTAYASLLLPS-----LLECSALAIFTQQQALEYC 308

Query: 252  GEHFQPVIDGLQS---ESYYAVAETVIRDYIFVHLN----DNNDKFNLLIFMLQK-LFSL 303
            G   +     + S    S    A  ++   +  H+     D   K   +  M+++ L ++
Sbjct: 309  GGKVRMATRMMYSRNKRSKVDEARDILAGVVLAHVPVPAYDFRQKCVYVAIMIRRILHAM 368

Query: 304  VDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE----DWLRKGKKLIQDEIENNGKKFD 359
            VD T V D+ D   N+ + L G L+ +  ++  +    D  R+   ++     N   +FD
Sbjct: 369  VDPTQV-DDKDYYGNKRLELAGQLLALLFEDCFKRLNADLKRQADAVLSK--SNRATQFD 425

Query: 360  FFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFIS 419
                  I++    N  +   +S    +K  R+         +R G T    RL+F+  + 
Sbjct: 426  IIKC--IRQDTLSNGLEHAISSGNWTVKRFRM---------ERKGVTQVLSRLSFISALG 474

Query: 420  FFRAVHRGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDS 478
                +   + F   R  S  R L P  WG LCP  TP+GE CGL+ ++     V +  D 
Sbjct: 475  MMTRIT--SQFEKTRKVSGPRALQPSQWGMLCPSDTPEGESCGLVKNLALMTHVTT-DDE 531

Query: 479  RGNIRDFSK-MRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKV 537
               +R  +  +    L +L+G  +            P    V L+G ++GV         
Sbjct: 532  EEPLRSLAHVLGVEPLLLLVGQEL----------HSPGSALVFLNGHILGV--------- 572

Query: 538  VAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP----------VRN 587
              H    + ++   +          +S+      +Y+ +   +  RP          V+ 
Sbjct: 573  --HQDPARFASDFRLLRRRGRVGEFVSVHTTTGNVYIASDGGRVCRPLLIVENGELLVKQ 630

Query: 588  ISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHE-EIHPT---------GM 637
            + L + ++          Q F+E    D  +    N++ A +E EI P           +
Sbjct: 631  VHLDALKAGRWTFNDFLTQGFVEYL--DVNE--ENNSYIALYESEITPETTHLEIEPFTL 686

Query: 638  LSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNT 697
            L V A + PY  HNQSPRN YQC M KQ MG        R D  +Y L  PQ PIV+T T
Sbjct: 687  LGVCAGIIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLNRMDTLMYLLVYPQKPIVKTKT 746

Query: 698  YTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGN 757
                G D    G NA VAV++Y+GYD+EDA+++N++S+DRG     + +     +    N
Sbjct: 747  IELIGYDRLGAGQNATVAVMSYSGYDIEDAIVMNRASLDRGFGRCIVLRKYGCTIKKYSN 806

Query: 758  KV-DRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYC------------------ 798
            +  DR              H ++D DG+  VG+ I PG+ Y                   
Sbjct: 807  RTQDRIVPPTPAQTGPNGRHRLLDKDGIAAVGEKISPGDVYINKQSPGNTRDPLPNPQAM 866

Query: 799  --SIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSS 856
              S Y  T  S++       ES  VD V +   +      K  +  RHTR P +GDKFSS
Sbjct: 867  PDSFYRPTAQSYKGPQ---GESCVVDKVMLTTSDEGQFNVKCLV--RHTRRPEVGDKFSS 921

Query: 857  RHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKF 916
            RHGQKGVC  +    D+PFS   G+ PDLI+NPH FPSRMT+  ++E +  K G   GKF
Sbjct: 922  RHGQKGVCGTIVEQSDLPFSE-RGICPDLIMNPHGFPSRMTVGKMIELLGGKAGLQDGKF 980

Query: 917  MDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIF 976
               T F        GDT T  S+ LV+         GF+Y+G ++++ G+ G  L   IF
Sbjct: 981  KYGTAFG-------GDTVTSLSEVLVEH--------GFSYNGKDLMHCGITGEPLVAYIF 1025

Query: 977  IGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYL 1036
            +GPVYYQ+L+HMV DK   R+ G    +TRQP +GR R GG+R GEMERD L+ +GAA L
Sbjct: 1026 MGPVYYQKLKHMVLDKMHARARGPRVVLTRQPTEGRARDGGLRLGEMERDCLIGYGAAML 1085

Query: 1037 LHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSK 1096
            + +RL   SD   A VC+ CG  L     H   R +                C  C    
Sbjct: 1086 ILERLMISSDQFEAQVCTNCG--LLGYKHHGTGRNL----------------CQQCADGG 1127

Query: 1097 GMETVAMPYVFRYLAAELAAMNIKITLQLGDG 1128
             +  + +PY  + L  EL +MNI   L L D 
Sbjct: 1128 TVSALKLPYACKLLFQELQSMNICPRLTLSDA 1159


>gi|327279896|ref|XP_003224691.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Anolis
            carolinensis]
          Length = 1174

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 324/1143 (28%), Positives = 512/1143 (44%), Gaps = 141/1143 (12%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   ++   ++   G+ P+ML++  C L G   
Sbjct: 109  MPNEARLRNLTYSAPLYVDITKTVVKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 168

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   + +D +  YT +     
Sbjct: 169  RDLCQLNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGECR--S 223

Query: 151  CVRKD-QSSVTLKLYYLLNGSV---------RLGFWLQGKEYLLPVGIVLKALVDTNDLE 200
            C+    + + T+ +  L  G           R+   L   +  +P+ IV +AL   +D +
Sbjct: 224  CLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRD 283

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +++           P + E VK  L E     +  +   L  IG   +    
Sbjct: 284  ILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAKP 328

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     A+ V++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 329  GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   ++ L++ +   Q  I + GK F+   LA IK       ++
Sbjct: 389  GNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFI-DRGKDFNL-ELA-IK-------TR 438

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   ++  L TG    Q     Q RAG +    RL F   +S  R ++      G +  
Sbjct: 439  IISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLA 496

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G   GL+ ++     ++                + IL  L
Sbjct: 497  KPRQLHNTLWGMICPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  +       + ++G  VG+    + E+++  LR+L+      VS  S
Sbjct: 546  EEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEVS 602

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
            +I D  E      +  G      L     K +   R+I    E   N            +
Sbjct: 603  MIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVV 662

Query: 599  ELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656
            E I   E+  V + +   D  + G       TH EIHP+ +L V A++ P+ DHNQSPRN
Sbjct: 663  EYIDTLEEETVMLAMTPDDLQEKGIAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRN 722

Query: 657  MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
             YQ  M KQ MG  +     R D   + L  PQ P+V T +       E P G N+IVA+
Sbjct: 723  TYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAI 782

Query: 717  LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA---- 772
             +YTGY+ ED++I+N+S+VDRG      Y++     S  G   D+ +   +  ++     
Sbjct: 783  ASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKG--FDQEEVFEKPTRETCQGM 840

Query: 773  -KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGSE 817
              +++  +D DGL   G  +   +       ++ +       TN R          + SE
Sbjct: 841  RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSE 900

Query: 818  SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
            +  VD V V +       +   I+ R  R P IGDKF+SRHGQKG C   +   DMPF+ 
Sbjct: 901  TGIVDQVMVTLNQEGY--KFCKIKVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT- 957

Query: 878  VTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDE 937
              G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF ++V           
Sbjct: 958  CEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVN---------- 1007

Query: 938  SKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRS 997
                V ++  +L   G++  G EVLY+G  G ++T +IFIGP YYQRL+HMV DK   R+
Sbjct: 1008 ----VQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRA 1063

Query: 998  TGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCG 1057
             G +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +RL   SD +   VC+LCG
Sbjct: 1064 RGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCG 1123

Query: 1058 SVLTA-TFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAA 1116
             +  A T  H  +                   C  C+    +  V MPY  + L  EL +
Sbjct: 1124 LMAIANTRTHTYE-------------------CRGCRNKTQISLVRMPYACKLLFQELMS 1164

Query: 1117 MNI 1119
            M+I
Sbjct: 1165 MSI 1167


>gi|324120678|dbj|BAJ78730.1| RNA polymerase II second largest subunit [Panorpa takenouchii]
          Length = 1172

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 321/1144 (28%), Positives = 514/1144 (44%), Gaps = 142/1144 (12%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN---FGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   V  +      G+ P+ML++  C L G   
Sbjct: 106  MPNEARLRNLTYSAPLYVDITKTIVQDGKDSVETQHQKSFIGKIPIMLRSTYCLLNGLTD 165

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  Y  KA +  
Sbjct: 166  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKFAY--KAEIRS 220

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  +  G   +     G+  +         +P+ IV +AL    D +
Sbjct: 221  CLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 280

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +D++   E   +  P + E     + + Q+++L         IG   +    
Sbjct: 281  ILEHIIYDFDDQ---EMMEMVKPSLDE---AFVVQEQNVALN-------FIGA--RGARP 325

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  +     A  +++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 326  GVTKDKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 385

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   ++ +++ +   Q  I + GK F+   LA IK       +K
Sbjct: 386  GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFI-DKGKDFNL-ELA-IK-------TK 435

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   +   L TG    Q     Q RAG +    RL F   +S  R ++      G +  
Sbjct: 436  IITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRINSPIGRDG-KLA 493

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G   GL+ ++     ++                + IL  L
Sbjct: 494  KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 542

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  S       + ++G  VG+    + E++++ LR+L+      VS  S
Sbjct: 543  EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMSTLRKLRRQMDIIVSEVS 599

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
            +I D  +      +  G      L       +   R++ +  E   N            +
Sbjct: 600  MIRDIRDREIRIYTDAGRICRPLLIVENRNLLLKKRHVDMLKERDYNNYGWQVLVASGVV 659

Query: 599  ELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQSPR 655
            E I   E+   M    PD     +  A+  T  H EIHP  +L V A++ P+ DHNQSPR
Sbjct: 660  EYIDTLEEETVMIAMSPDDLRQEKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPR 719

Query: 656  NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
            N YQ  M KQ MG  +     R D   + L  P  P+V T +       E P G N IVA
Sbjct: 720  NTYQSAMGKQAMGVYITNYHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINTIVA 779

Query: 716  VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT----ETIDLSDDGNKVDRGQKLFRRNKD 771
            +L YTGY+ ED++ILN S+V+RG      Y++    ET  L   G++ ++ +K  R++  
Sbjct: 780  ILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSETKRL---GDQEEQFEKPTRQSCQ 836

Query: 772  A--KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSR---KG 815
                +L+  +D DG+             +G+ I   E    +   T    + ++    + 
Sbjct: 837  GMRNALYDKLDEDGIIAPGIRVSGDDVIIGKTITLPENDDELEGTTKRHTKRDASTFLRN 896

Query: 816  SESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPF 875
            SE+  VD V + + NS+   +   IR R  R P IGDKF+SRHGQKG C   +   DMPF
Sbjct: 897  SETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPF 954

Query: 876  SGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGT 935
            +   G+ PD+IINPHA PSRMTI  L+E +  K G+  G+  DATPF ++V         
Sbjct: 955  T-CEGLTPDIIINPHAIPSRMTIGHLIECIQGKLGANKGEIGDATPFNDAVN-------- 1005

Query: 936  DESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQV 995
                  V ++  +L+  G++  G EV+Y+G  G ++  ++F+GP YYQRL+HMV DK   
Sbjct: 1006 ------VQKISTLLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHS 1059

Query: 996  RSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSL 1055
            R+ G +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +RL   SD +   VC+ 
Sbjct: 1060 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNF 1119

Query: 1056 CGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELA 1115
            CG +  A                          C  C+    +  V +PY  + L  EL 
Sbjct: 1120 CGLIAIANL------------------RSNTFECKGCKNKTQISQVRLPYAAKLLFQELM 1161

Query: 1116 AMNI 1119
            +MNI
Sbjct: 1162 SMNI 1165


>gi|269859858|ref|XP_002649653.1| DNA-directed RNA polymerases I, II, and III, subunit 2
            [Enterocytozoon bieneusi H348]
 gi|220067016|gb|EED44485.1| DNA-directed RNA polymerases I, II, and III, subunit 2
            [Enterocytozoon bieneusi H348]
          Length = 1107

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 326/1213 (26%), Positives = 536/1213 (44%), Gaps = 223/1213 (18%)

Query: 13   RELVRHHIESFDYMLDEGLSEMFD------------------------------------ 36
            + LVR HIESF+Y +++ + E+                                      
Sbjct: 15   KNLVRQHIESFNYFIEKEIKEIVQANDIIDSDIDRNFYLRYLNIRVEKPTMIENMVEQII 74

Query: 37   ---HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHL-------- 85
                CR   I+Y G +  D+E  Y+     ++++  + G+ P+M+++ +CHL        
Sbjct: 75   YPQECRIRDITYAGNIYVDIE--YIKNKEVIIKKNISMGKMPIMIRSSKCHLTTHMLNSK 132

Query: 86   --QGADSQKLVSLKEEAA--EMGGYFILNGLERVF---------RSVI-LPKQNYPMSMV 131
                   + L++ K +    + GGYFI+ G+E+V          R +I + K     SM 
Sbjct: 133  IIMNERQKNLINYKTQECIYDNGGYFIIKGVEKVIHIQEQQSKNRIIIEMGKNGLYTSMT 192

Query: 132  RSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--LPVGIV 189
             SS +                 K++++V  K            F++Q   ++  +P+ +V
Sbjct: 193  SSSIK----------------HKNKTNVIYK---------NDKFYIQNTIFIEDVPIVLV 227

Query: 190  LKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQ 249
            LK L    D EI +++            G  G  L+    ++   EV +  + T    L 
Sbjct: 228  LKTLGLNTDEEIVSYI------------GKEGVELM----ELSFGEVYEKDIYTETDALI 271

Query: 250  HIGEHFQPVIDGLQSESYYAV-AETVIRDYIFVHLNDNNDKFN---LLIFMLQKLFSLVD 305
             + +  +     L+S+    +  ++++ + +F ++  ++D  N    L  M++KL     
Sbjct: 272  ELSKFIK-----LKSDDNKEIKVKSILAEKLFPNIKIDDDLKNKGICLCLMIRKLILAKQ 326

Query: 306  HTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDW---LRKG-KKLIQDEIENNGKKFD-- 359
            +    D+ D L N+   L G L++I  ++  + +   L+K   K++   I  N  +FD  
Sbjct: 327  NLLKPDDKDYLGNKRFELAGQLLSILFEDTFKKFNFELKKSIDKILSKRIRTN--EFDAL 384

Query: 360  -FFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFI 418
             FFNL           +  I T++   + +G    +      +R+G T    R +++  +
Sbjct: 385  TFFNLQ----------TGSITTTLSRAISSGNWNLKRFK--MERSGVTHVLTRYSYITAL 432

Query: 419  SFFRAVHRGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYD 477
                 ++  + F   R  S  R L P SWG  CP  TP+GE CGL+ ++     +++  D
Sbjct: 433  GMMTKIN--SHFEKTRKVSGPRSLHPSSWGMFCPADTPEGESCGLVKNLALLTEISTESD 490

Query: 478  SRGNIRDFSKMRTSILRVLIGVGMIP-SLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEK 536
            S             I  +L  +G+I     +  +        V ++G + G+  +S IE 
Sbjct: 491  S-----------DIIKNILQTLGVIKLKFCQESEFYAKNKFMVFINGELFGL--TSNIEY 537

Query: 537  VVAHLRRLKVSA-----ASVIPDDLEVG-YVPLSLGGAYPGLYLFTSPPKFVR----PVR 586
            +   +R+++         S+  + LE   Y+    G     L +      F         
Sbjct: 538  LCCAIRKIRREGKINKFVSIFHNKLENAIYISTDNGRICRPLIIIKKNSNFFTNYQFQCN 597

Query: 587  NISLPSEESQNIELIGPFEQVFMEIRCPDG---GDGGRRNAFPATHEEIHPTGMLSVVAN 643
             I   S     +E +  +  V  E  C       +    N    TH EI    +LS++A 
Sbjct: 598  KIKYKSFNDLLLEGLIEYVDVNEENDCLIALHKSNINNLNIENYTHLEIADYSILSLIAG 657

Query: 644  LTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGI 703
            L P+  HNQSPRN YQC M KQ +G     +K R D  +  L   Q P+  +        
Sbjct: 658  LIPFPHHNQSPRNTYQCAMGKQAIGHIGTNIKKRFDLLMLQLNYTQRPLSCSKILDINKY 717

Query: 704  DEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQ 763
            ++ P G NA+VAV++Y+GYD+EDA+I+NK S++RG    ++Y+T  I+            
Sbjct: 718  NKIPAGINAMVAVMSYSGYDIEDAIIVNKDSIERGFMRVEVYKTIKIE------------ 765

Query: 764  KLFRR--NKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFV 821
              F R  N   + ++ V   + +  VG  +  G+   +         +T   KG    ++
Sbjct: 766  --FERFTNGKTEEIYIVNGKEQIIEVGTHVMDGDILITKVSPIDKKLKTVKYKGHPG-YI 822

Query: 822  DYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGM 881
            D + +   +   + +   I+ R TR   IGDKFSSRHGQKGV   + P +D+PF+   G+
Sbjct: 823  DTIILSKGDDDKILK---IKVRETRCVEIGDKFSSRHGQKGVVGLIVPQVDLPFNEY-GV 878

Query: 882  RPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDT--GTDESK 939
             PD+I+NPH FPSRMT+  +LE + +K   L G++ DATPF N+    +  T   T   +
Sbjct: 879  CPDIIMNPHGFPSRMTVGKILELIGSKVTCLTGEYTDATPFENNTADNDLKTIFNTTNQE 938

Query: 940  SLVDE------LGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKF 993
             L  E      L ++L   G++Y G +V  SG+ G +    IF GP++YQRL+HMV+DK 
Sbjct: 939  PLHKEHRQTELLCQILIDHGYSYSGKDVFTSGITGEQFEAYIFFGPIFYQRLKHMVADKI 998

Query: 994  QVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVC 1053
              RS G    +TRQP +GR + GG+R GEMERD L+ +GA  LL++RL  CSD   A +C
Sbjct: 999  HCRSRGPRAVLTRQPTEGRSKDGGLRLGEMERDCLIGYGANSLLNERLMHCSDEFDAFIC 1058

Query: 1054 SLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAE 1113
              CG +                          K  C+ C  SK    V MPY  + L  E
Sbjct: 1059 ETCGIICY------------------------KERCYWC--SKKPIIVKMPYACKLLFQE 1092

Query: 1114 LAAMNI--KITLQ 1124
            + AMNI  KI L+
Sbjct: 1093 MMAMNILPKIILE 1105


>gi|297673503|ref|XP_002814800.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 1
            [Pongo abelii]
 gi|410038417|ref|XP_003950400.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Pan
            troglodytes]
          Length = 1167

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 324/1143 (28%), Positives = 511/1143 (44%), Gaps = 141/1143 (12%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   ++   ++   G+ P+ML++  C L G   
Sbjct: 102  MPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 161

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   + +D +  YT +     
Sbjct: 162  RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGECR--S 216

Query: 151  CVRKD-QSSVTLKLYYLLNGSV---------RLGFWLQGKEYLLPVGIVLKALVDTNDLE 200
            C+    + + T+ +  L  G           R+   L   +  +P+ IV +AL   +D +
Sbjct: 217  CLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRD 276

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +++           P + E VK  L E     +  +   L  IG   +    
Sbjct: 277  ILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAKP 321

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     A+ V++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 322  GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 381

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   ++ L++ +   Q  I + GK F+   LA IK       ++
Sbjct: 382  GNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFI-DRGKDFNL-ELA-IK-------TR 431

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   ++  L TG    Q     Q RAG +    RL F   +S  R ++      G +  
Sbjct: 432  IISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLA 489

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G   GL+ ++     ++                + IL  L
Sbjct: 490  KPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEFL 538

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  +       + ++G  VG+    + E+++  LR+L+      VS  S
Sbjct: 539  EEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEVS 595

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
            +I D  E      +  G      L     K +   R+I    E   N            +
Sbjct: 596  MIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVV 655

Query: 599  ELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656
            E I   E+  V + +   D  +         TH EIHP+ +L V A++ P+ DHNQSPRN
Sbjct: 656  EYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRN 715

Query: 657  MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
             YQ  M KQ MG  +     R D   + L  PQ P+V T +       E P G N+IVA+
Sbjct: 716  TYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAI 775

Query: 717  LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA---- 772
             +YTGY+ ED++I+N+S+VDRG      Y++     S  G   D+ +   +  ++     
Sbjct: 776  ASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKG--FDQEEVFEKPTRETCQGM 833

Query: 773  -KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGSE 817
              +++  +D DGL   G  +   +       ++ +       TN R          + SE
Sbjct: 834  RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSE 893

Query: 818  SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
            +  VD V V +       +   IR R  R P IGDKF+SRHGQKG C   +   DMPF+ 
Sbjct: 894  TGIVDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT- 950

Query: 878  VTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDE 937
              G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF ++V           
Sbjct: 951  CEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVN---------- 1000

Query: 938  SKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRS 997
                V ++  +L   G++  G EVLY+G  G ++T +IFIGP YYQRL+HMV DK   R+
Sbjct: 1001 ----VQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRA 1056

Query: 998  TGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCG 1057
             G +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +RL   SD +   VC+LCG
Sbjct: 1057 RGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCG 1116

Query: 1058 SVLTA-TFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAA 1116
             +  A T  H  +                   C  C+    +  V MPY  + L  EL +
Sbjct: 1117 IMAIANTRTHTYE-------------------CRGCRNKTQISLVRMPYACKLLFQELMS 1157

Query: 1117 MNI 1119
            M+I
Sbjct: 1158 MSI 1160


>gi|324120626|dbj|BAJ78704.1| RNA polymerase II second largest subunit [Euconocephalus varius]
          Length = 1175

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 326/1155 (28%), Positives = 513/1155 (44%), Gaps = 164/1155 (14%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+       G   +    ++   G+ P+ML++  C L G   
Sbjct: 109  MPNEARLRNLTYSAPLYVDITKTIEKEGEEPIETQHQKTFIGKIPIMLRSTYCLLSGLTD 168

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  Y  KA +  
Sbjct: 169  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKYAY--KAEIRS 223

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  +  G   +     G+  +         +P+ IV +AL    D +
Sbjct: 224  CLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 283

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +D+           P + E VK  L E     +  +   L  IG   +    
Sbjct: 284  ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGARP 328

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     A  +++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 329  GVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+  +L   L   L K  ++   +  + GK F+   LA IK       +K
Sbjct: 389  GNKRLDLAGPLLA-FLFRGLFKTLMKEVRMYAQKFIDRGKDFN-LELA-IK-------TK 438

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   +   L TG    Q    +  RAG +    RL F   +S  R V+      G +  
Sbjct: 439  IITDGLRYSLATGNWGDQKKAHM-ARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 496

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G   GL+ ++     ++                + IL  L
Sbjct: 497  KPRQLHNSLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  S       + ++G  VG+    + E+++A LR+L+      VS  S
Sbjct: 546  EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVSEVS 602

Query: 551  VIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------------RNISLPSEESQ 596
            +I D  D E+               ++T   +  RP+            ++I +  E   
Sbjct: 603  MIRDIRDREI--------------RIYTDAGRICRPLLIVEGGSLLLKKKHIDMLKEREY 648

Query: 597  N------------IELIGPF-EQVFMEIRCPDGGDGGRRNAFPA--THEEIHPTGMLSVV 641
            N            +E I    E+  M    PD     +  A+    TH EIHP  +L V 
Sbjct: 649  NNYGWQVLVASGVVEYIDTLEEETVMIAMSPDDLRQDKEYAYCTTYTHCEIHPAMILGVC 708

Query: 642  ANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKY 701
            A++ P+ DHNQSPRN YQ  M KQ MG  +     R D   + L  P  P+V T +    
Sbjct: 709  ASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYL 768

Query: 702  GIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVD 760
               E P G N+IVA+L YTGY+ ED++ILN S+V+RG      +++ +  +    G++ +
Sbjct: 769  RFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFFRSYKDAESKRIGDQEE 828

Query: 761  RGQKLFRRNKDA--KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNS 807
            + +K  R+       +L+  +D DG+             +G+ I   E    +   T   
Sbjct: 829  QFEKPTRQTCQGMRNALYDKLDDDGIISPGIRVSGDDVVIGKTIMLPETEDELEGTTKRF 888

Query: 808  WRTNSR---KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVC 864
             + ++    + SE+  VD V + + NS+   +   IR R  R P IGDKF+SRHGQKG C
Sbjct: 889  TKRDASTFLRNSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTC 946

Query: 865  SQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFAN 924
               +   DMPF+   G+ PD+IINPHA PSRMTI  L+E +  K  S  G+  DATPF +
Sbjct: 947  GIQYRQEDMPFT-CEGITPDIIINPHAIPSRMTIGHLIECLQGKVSSNKGEIGDATPFND 1005

Query: 925  SVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQR 984
            +V               V ++  +L+  G+   G EV+Y+G  G ++  ++F+GP YYQR
Sbjct: 1006 AVN--------------VQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQVFLGPTYYQR 1051

Query: 985  LRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTC 1044
            L+HMV DK   R+ G +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +RL   
Sbjct: 1052 LKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEV 1111

Query: 1045 SDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMP 1104
            SD +   VC+ CG +  A   +                      C  C+    +  V +P
Sbjct: 1112 SDPYRIHVCNFCGLIAIANLRN------------------NTFECKGCKNKTQISQVRLP 1153

Query: 1105 YVFRYLAAELAAMNI 1119
            Y  + L  EL AMNI
Sbjct: 1154 YAAKLLFQELMAMNI 1168


>gi|23512288|gb|AAH38472.1| Polymerase (RNA) II (DNA directed) polypeptide B [Mus musculus]
          Length = 1167

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 324/1143 (28%), Positives = 511/1143 (44%), Gaps = 141/1143 (12%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   ++   ++   G+ P+ML++  C L G   
Sbjct: 102  MPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 161

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   + +D +  YT +     
Sbjct: 162  RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGECR--S 216

Query: 151  CVRKD-QSSVTLKLYYLLNGSV---------RLGFWLQGKEYLLPVGIVLKALVDTNDLE 200
            C+    + + T+ +  L  G           R+   L   +  +P+ IV +AL   +D +
Sbjct: 217  CLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRD 276

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +++           P + E VK  L E     +  +   L  IG   +    
Sbjct: 277  ILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAKP 321

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     A+ V++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 322  GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 381

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   ++ L++ +   Q  I + GK F+   LA IK       ++
Sbjct: 382  GNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFI-DRGKDFNL-ELA-IK-------TR 431

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   ++  L TG    Q     Q RAG +    RL F   +S  R ++      G +  
Sbjct: 432  IISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLA 489

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G   GL+ ++     ++                + IL  L
Sbjct: 490  KPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEFL 538

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  +       + ++G  VG+    + E+++  LR+L+      VS  S
Sbjct: 539  EEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEVS 595

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
            +I D  E      +  G      L     K +   R+I    E   N            +
Sbjct: 596  MIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVV 655

Query: 599  ELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656
            E I   E+  V + +   D  +         TH EIHP+ +L V A++ P+ DHNQSPRN
Sbjct: 656  EYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRN 715

Query: 657  MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
             YQ  M KQ MG  +     R D   + L  PQ P+V T +       E P G N+IVA+
Sbjct: 716  TYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAI 775

Query: 717  LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA---- 772
             +YTGY+ ED++I+N+S+VDRG      Y++     S  G   D+ +   +  ++     
Sbjct: 776  ASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKG--FDQEEVFEKPTRETCQGM 833

Query: 773  -KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGSE 817
              +++  +D DGL   G  +   +       ++ +       TN R          + SE
Sbjct: 834  RHAIYEKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSE 893

Query: 818  SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
            +  VD V V +       +   IR R  R P IGDKF+SRHGQKG C   +   DMPF+ 
Sbjct: 894  TGIVDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT- 950

Query: 878  VTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDE 937
              G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF ++V           
Sbjct: 951  CEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVN---------- 1000

Query: 938  SKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRS 997
                V ++  +L   G++  G EVLY+G  G ++T +IFIGP YYQRL+HMV DK   R+
Sbjct: 1001 ----VQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRA 1056

Query: 998  TGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCG 1057
             G +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +RL   SD +   VC+LCG
Sbjct: 1057 RGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCG 1116

Query: 1058 SVLTA-TFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAA 1116
             +  A T  H  +                   C  C+    +  V MPY  + L  EL +
Sbjct: 1117 IMAIANTRTHTYE-------------------CRGCRNKTQISLVRMPYACKLLFQELMS 1157

Query: 1117 MNI 1119
            M+I
Sbjct: 1158 MSI 1160


>gi|324120676|dbj|BAJ78729.1| RNA polymerase II second largest subunit [Stenopsyche marmorata]
          Length = 1174

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 331/1156 (28%), Positives = 516/1156 (44%), Gaps = 166/1156 (14%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   +    ++   G+ P+ML++  C L G   
Sbjct: 107  MPNEARLRNLTYSAPLYVDITKTIVKEGEDPIETQHQKTFIGKIPIMLRSTYCLLNGLID 166

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  +  KA +  
Sbjct: 167  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKFAF--KAEIRS 221

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  +  G   +     G+  +         +P+ IV +AL    D +
Sbjct: 222  CLEHSSRPTSTLWVNMMSRGGQSIKKNAIGQRIIAIVPYIKQEIPIMIVFRALGFVADRD 281

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +D+           P + E VK  L E     +  +   L  IG   +    
Sbjct: 282  ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RGARP 326

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     A  +++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 327  GVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 386

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   ++ +++ +   Q  I+  GK F+   LA IK       +K
Sbjct: 387  GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDR-GKDFNL-ELA-IK-------TK 436

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   +   L TG    Q     Q RAG +    RL F   +S  R V+      G +  
Sbjct: 437  IITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 494

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G   GL+ ++         Y S G+        + IL  L
Sbjct: 495  KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMA-----YISVGS------QPSPILEFL 543

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  S       + ++G  VG+    + E+++A LR+L+      VS  S
Sbjct: 544  EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVSEVS 600

Query: 551  VIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------------RNISLPSEESQ 596
            +I D  D E+               ++T   +  RP+            R+I +  E   
Sbjct: 601  MIRDIRDREI--------------RIYTDAGRICRPLLIVDNGILLLKKRHIDMLKERDL 646

Query: 597  N------------IELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVV 641
            N            +E I   E+   M    PD     +  A+  T  H EIHP  +L V 
Sbjct: 647  NNYSWQVLVASGVVEYIDTLEEETVMIAMSPDDLRQEKEYAYCTTYTHCEIHPAMILGVC 706

Query: 642  ANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKY 701
            A++ P+ DHNQSPRN YQ  M KQ MG  +     R D   + L  P  P+V T +    
Sbjct: 707  ASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYL 766

Query: 702  GIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD-GNKVD 760
               E P G N+IVA+L YTGY+ ED++ILN S+V+RG      Y++     S   G++ +
Sbjct: 767  RFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKRIGDQEE 826

Query: 761  RGQKLFRRNKDA--KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNS 807
            + +K  R        +L+  +D DG+             +G+ I   E    + D TT  
Sbjct: 827  QFEKPTRTTCQGMRNALYDKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDEL-DGTTKR 885

Query: 808  WRTNSR----KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGV 863
            +         + SE+  VD V + + NS+   +   IR R  R P IGDKF+SRHGQKG 
Sbjct: 886  YTKRDASTFLRNSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGT 943

Query: 864  CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFA 923
            C   +   DMPF+   G+ PD+IINPHA PSRMTI  L+E +  K  S  G+  DATPF 
Sbjct: 944  CGIQYRQEDMPFT-CEGLTPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFN 1002

Query: 924  NSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQ 983
            ++V               V ++  +L+  G++  G EV+Y+G  G ++  ++F+GP YYQ
Sbjct: 1003 DAVN--------------VQKISTLLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQ 1048

Query: 984  RLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHT 1043
            RL+HMV DK   R+ G +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +RL  
Sbjct: 1049 RLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFE 1108

Query: 1044 CSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAM 1103
             SD +   VC+ CG +  A   +                      C  C+    +  V +
Sbjct: 1109 VSDPYRIHVCNFCGLIAIANLRN------------------NTFECKGCKNKTQISQVRL 1150

Query: 1104 PYVFRYLAAELAAMNI 1119
            PY  + L  EL +MNI
Sbjct: 1151 PYAAKLLFQELMSMNI 1166


>gi|294953589|ref|XP_002787839.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
            putative [Perkinsus marinus ATCC 50983]
 gi|239902863|gb|EER19635.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
            putative [Perkinsus marinus ATCC 50983]
          Length = 1159

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 333/1165 (28%), Positives = 514/1165 (44%), Gaps = 206/1165 (17%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRER-FNFGQFPVMLKTRRCHLQGADSQKLVSL 96
            CR   ++Y   ++ D+ +     G  VVR+     G+ P+ML+++ C L  A ++++  +
Sbjct: 109  CRIRDMTYASDILVDISYVR---GREVVRKNGVCVGRLPIMLRSKLCRLHDATTEQMERM 165

Query: 97   KEEAAEMGGYFILNGLERVF---------RSVI-LPKQNYPMSMVRSSFRDRREGYTDKA 146
            +E   + GGYFI+ G E+V          R ++ +  +    ++V SS  D      +K+
Sbjct: 166  QECPHDPGGYFIIKGTEKVLLMQEQLSNNRIIVEMDPKKLVQAVVTSSTAD------NKS 219

Query: 147  VVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLT 206
              + C + + S + +K                    L+P  I+L+A+   +D EI   + 
Sbjct: 220  RTVVCFKSELSGLFVKHSAFTE--------------LIPAVIMLRAMGMESDQEIVQMV- 264

Query: 207  CCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVI--DGLQS 264
                     EK  V   ++S      L +     + ++ Q L+++G   +  +  DG  S
Sbjct: 265  -------GTEKCHVDGMILS------LQDAHATGVFSQQQALEYLGNKLKIRMYADGSFS 311

Query: 265  ESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLP 324
             ++        +   F      + K   L  M+++       +++ D+ D   N+ + L 
Sbjct: 312  SAFDQDKGGATKPLDF------SGKCRFLCLMMRRALDARSDSTLLDDRDYYGNKRLELA 365

Query: 325  GHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKK-------------VME 371
            G LI +      ED  +     I+  ++    KF F   ++ +              V+ 
Sbjct: 366  GQLIALLF----EDLFKSMNTEIKKSVDMRLTKF-FQQTSSARAGRSTVGLDSGYPDVLR 420

Query: 372  KNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGAS-F 430
               S++I   +   + +G    +     + R   +  ++ L+   FI+   A+ R  S F
Sbjct: 421  DIDSERITRGMNRAISSGNWNIK-----RFRIDRSGVSQVLSRFSFIAALGAMTRVKSQF 475

Query: 431  AGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMR 489
               R  +  R L P  WG LCP  TP+GE CGL+  ++    V +  D  G IR      
Sbjct: 476  EKSRKLAGPRALQPSQWGMLCPSDTPEGEQCGLIKALSLLAHVTTP-DEEGPIRRLCYS- 533

Query: 490  TSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV--IPSSEIEKVVAHLRRLKVS 547
               L V    G+     +L  +G    ++V L+G ++GV   P + +  +    RR K+ 
Sbjct: 534  ---LGVEDAAGLTGE--ELHSAG---TITVFLNGALLGVHRRPQTFMSDMRTLRRRGKIG 585

Query: 548  A-ASVIPDDLEVGYVPLSLGG--AYPGLYLFTSPPKF-----VRPVRNISLP-------- 591
               S+   + +   +  + GG    P + +    P       +R +R+  L         
Sbjct: 586  EFVSIYEHEAQRAIIIATDGGRLCRPLIVVKKGKPMLKPEVHLRKLRSGELRFTDFLRLG 645

Query: 592  -------SEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANL 644
                   +EE+ +   I P E V ME                +TH EI P  +L  VA L
Sbjct: 646  IIEWVDVNEENNSYIAINP-EDVTME----------------STHLEIEPLTLLGAVAGL 688

Query: 645  TPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGID 704
             PY  HNQSPRN YQC M KQ MG        R D +L  L  PQ P+ ++ T    G D
Sbjct: 689  VPYPHHNQSPRNTYQCAMGKQAMGNIACNQHLRTDTQLLLLTYPQQPMCKSRTIDLIGYD 748

Query: 705  EYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGM---CHGQIYQTETIDLSDDGNKVDR 761
              P G NA VAV++Y+GYD+EDA+I+NK+S+DRG    C  + Y T     +   ++  R
Sbjct: 749  NLPAGHNASVAVMSYSGYDIEDALIMNKASIDRGFGRCCVTRKYATPLARSAIGSSEELR 808

Query: 762  GQKLFRR----------------NKDAKSLHSVIDSDGLPYVGQMIHPG-------EPYC 798
               +                   +K     +++ID DGLP+ G+ +  G        P  
Sbjct: 809  APPVVGGGGKGGGRHQRQGGSVADKHCSCRYAIIDEDGLPFSGEQVVDGGILINKVSPMS 868

Query: 799  SIYDKTTNSWRTN--SRKGSESVFVDYVAVDMKNSKNLPQKANIRF--RHTRNPIIGDKF 854
                   + WR    S K     +VD V      ++N  Q    +   R TR P +GDKF
Sbjct: 869  DAATGQVSHWRDTPISYKNPVPSYVDRVIA----TENEDQAKIFKCITRQTRRPELGDKF 924

Query: 855  SSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHG 914
            SSRHGQKGV   +    DMPF G  G  PDLI+NPH FPSRMT+  LLE V+ K G L G
Sbjct: 925  SSRHGQKGVVGLIVNQEDMPF-GEKGWCPDLIMNPHGFPSRMTVGKLLECVSGKAGVLDG 983

Query: 915  KFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCE 974
            +    T F        G T    ++SL+          GF+    E + SGV G  L C 
Sbjct: 984  ERSYGTAFG-------GTTKEHMTQSLIRH--------GFHPSAKEYITSGVTGEALECY 1028

Query: 975  IFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAA 1034
            IF+GP+YYQ+L+HMV DK   RSTG ++Q+TRQP +GR + GG+R GEMERD L+A+GA+
Sbjct: 1029 IFVGPIYYQKLKHMVMDKIHARSTGPVNQLTRQPTEGRAKDGGLRLGEMERDCLVAYGAS 1088

Query: 1035 YLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQT 1094
             LL +RL   SD   A VC  CG +                       + +  TC  C T
Sbjct: 1089 NLLLERLMLSSDVFTASVCRRCGLL-----------------------SYQNGTCKLCGT 1125

Query: 1095 SKGMETVAMPYVFRYLAAELAAMNI 1119
            S+ +  + MPY  + L  EL AMN+
Sbjct: 1126 SENIVDIRMPYACKLLFQELQAMNV 1150


>gi|321470077|gb|EFX81055.1| hypothetical protein DAPPUDRAFT_102782 [Daphnia pulex]
          Length = 1174

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 323/1140 (28%), Positives = 510/1140 (44%), Gaps = 135/1140 (11%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+       G   V    ++   G+ P+ML++  C L G + 
Sbjct: 109  MPNEARLRNLTYSAPLYVDITKTVHKEGEEQVETQHQKTFIGKIPIMLRSTYCLLNGMND 168

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  Y  K  +  
Sbjct: 169  RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKFAY--KTEIRS 223

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  L  G   +     G+  +         +P+ IV +AL    D +
Sbjct: 224  CLEHSSRPTSTLYVNMLARGGQGIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 283

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +++           P + E VK  L E     +  +   L  IG   +    
Sbjct: 284  ILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RGARP 328

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     A  +++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 329  GVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   +  +++ +   Q  I + GK F+   LA IK       ++
Sbjct: 389  GNKRLDLAGPLMAFLFRALFKTLMKEVRMYAQKFI-DRGKDFNL-ELA-IK-------TR 438

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   +   L TG    Q     Q RAG +    RL F   +S  R V+      G +  
Sbjct: 439  IITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 496

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G   GL+ ++         Y S G+        + IL  L
Sbjct: 497  KPRQLHNTLWGMVCPAETPEGAAVGLVKNLALMA-----YISVGS------QPSPILEFL 545

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  S       + ++G  VG+    + E+++A LR+L+      VS  S
Sbjct: 546  EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVSEVS 602

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNIS-LPSEESQN-----------I 598
            ++ D  +      +  G      L     K +   R++  L   E  N           +
Sbjct: 603  MVRDIQDREIRIYTDAGRICRPLLIVENCKLLLKKRHVDMLKQREYINFSWQELVATGVV 662

Query: 599  ELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656
            E I   E+    + +   D   G        TH EIHP  +L V A++ P+ DHNQSPRN
Sbjct: 663  EYIDTLEEETAMIAMSPEDLRQGKDAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRN 722

Query: 657  MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
             YQ  M KQ MG  +     R D   + LQ PQ P+V T +       E P G N++VA+
Sbjct: 723  TYQSAMGKQAMGVYITNFHVRMDTLAHVLQYPQKPLVTTRSMEYLRFRELPAGINSVVAI 782

Query: 717  LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD-DGNKVDRGQKLFRRNKDA--K 773
            L+YTGY+ ED++I+N S+V+RG      +++     S    ++ +  +K FR +      
Sbjct: 783  LSYTGYNQEDSVIMNASAVERGFFRSVFFRSYKDQESKRSADQEETFEKPFRDHCQGMRN 842

Query: 774  SLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSR---KGSESV 819
            +++  +D DG+             +G+ I   E    +   T    + ++    + SE+ 
Sbjct: 843  AIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENDDDLESTTKKFSKRDASTFLRHSETG 902

Query: 820  FVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVT 879
             VD V + +    N  +   IR R  R P IGDKF+SRHGQKG C   +   DMPF+   
Sbjct: 903  IVDQVMLTLNAEGN--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT-CE 959

Query: 880  GMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESK 939
            G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF ++V             
Sbjct: 960  GLTPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVN------------ 1007

Query: 940  SLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTG 999
              V ++  +L+  G++  G EVLY+G  G +L  ++F+GP YYQRL+HMV DK   R+ G
Sbjct: 1008 --VQKISNLLQEYGYHLRGNEVLYNGHTGRKLNAQVFLGPTYYQRLKHMVDDKIHSRARG 1065

Query: 1000 TMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSV 1059
             +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +RL   SD +   VC+LCG +
Sbjct: 1066 PVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNLCGII 1125

Query: 1060 LTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
              A   +                      C  C+    +  V +PY  + L  EL +MNI
Sbjct: 1126 AVANLRN------------------NTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 1167


>gi|194379208|dbj|BAG58155.1| unnamed protein product [Homo sapiens]
          Length = 1167

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 324/1143 (28%), Positives = 511/1143 (44%), Gaps = 141/1143 (12%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   ++   ++   G+ P+ML++  C L G   
Sbjct: 102  MPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 161

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   + +D +  YT +     
Sbjct: 162  RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGECR--S 216

Query: 151  CVRKD-QSSVTLKLYYLLNGSV---------RLGFWLQGKEYLLPVGIVLKALVDTNDLE 200
            C+    + + T+ +  L  G           R+   L   +  +P+ IV +AL   +D +
Sbjct: 217  CLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRD 276

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +++           P + E VK  L E     +  +   L  IG   +    
Sbjct: 277  ILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAKP 321

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     A+ V++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 322  GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 381

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   ++ L++ +   Q  I + GK F+   LA IK       ++
Sbjct: 382  GNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFI-DRGKDFNL-ELA-IK-------TR 431

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   ++  L TG    Q     Q RAG +    RL F   +S  R ++      G +  
Sbjct: 432  IISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLA 489

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G   GL+ ++     ++                + IL  L
Sbjct: 490  KPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEFL 538

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  +       + ++G  VG+    + E+++  LR+L+      VS  S
Sbjct: 539  EEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEVS 595

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
            +I D  E      +  G      L     K +   R+I    E   N            +
Sbjct: 596  MIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVV 655

Query: 599  ELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656
            E I   E+  V + +   D  +         TH EIHP+ +L V A++ P+ DHNQSPRN
Sbjct: 656  EYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRN 715

Query: 657  MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
             YQ  M KQ MG  +     R D   + L  PQ P+V T +       E P G N+IVA+
Sbjct: 716  TYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAI 775

Query: 717  LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA---- 772
             +YTGY+ ED++I+N+S+VDRG      Y++     S  G   D+ +   +  ++     
Sbjct: 776  ASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKG--FDQEEVFEKPTRETCQGM 833

Query: 773  -KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGSE 817
              +++  +D DGL   G  +   +       ++ +       TN R          + SE
Sbjct: 834  RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSE 893

Query: 818  SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
            +  VD V V +       +   IR R  R P IGDKF+SRHGQKG C   +   DMPF+ 
Sbjct: 894  TGIVDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT- 950

Query: 878  VTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDE 937
              G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF ++V           
Sbjct: 951  CEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVN---------- 1000

Query: 938  SKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRS 997
                V ++  +L   G++  G EVLY+G  G ++T +IFIGP YYQRL+HMV DK   R+
Sbjct: 1001 ----VQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRA 1056

Query: 998  TGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCG 1057
             G +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +RL   SD +   VC+LCG
Sbjct: 1057 RGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCG 1116

Query: 1058 SVLTA-TFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAA 1116
             +  A T  H  +                   C  C+    +  V MPY  + L  EL +
Sbjct: 1117 IMAIANTRTHTYE-------------------CRGCRNKTQISLVRMPYACKLLFQELMS 1157

Query: 1117 MNI 1119
            M+I
Sbjct: 1158 MSI 1160


>gi|302488402|ref|NP_001019632.2| DNA-directed RNA polymerase II subunit RPB2 [Danio rerio]
          Length = 1174

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 326/1145 (28%), Positives = 508/1145 (44%), Gaps = 145/1145 (12%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSP---VVRERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G        ++   G+ P+ML++  C L G   
Sbjct: 109  MPNEARLRNLTYSAPLYVDITKTIIKDGEEQQQTQHQKTFIGKIPIMLRSTYCLLSGLTD 168

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   + +D +  YT +    R
Sbjct: 169  RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGEC---R 222

Query: 151  CVRKDQSSVTLKLYYLLNG-----------SVRLGFWLQGKEYLLPVGIVLKALVDTNDL 199
               ++ S  T  ++  +               R+   L      +P+ IV +AL   +D 
Sbjct: 223  SCLENSSRPTSTIWVSMMARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDR 282

Query: 200  EIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVI 259
            +I  H+   +D+           P + E VK  L E     +  +   L  IG   +   
Sbjct: 283  DILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAK 327

Query: 260  DGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
             G+  E     A+ V++  +  H+  ++     K   L +M+ +L          D+ D 
Sbjct: 328  PGVTKERRIKYAKEVLQKEVLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDH 387

Query: 316  LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPS 375
              N+ + L G L+    +   ++ L++ +   Q  I + GK F+   LA IK       +
Sbjct: 388  YGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQKFI-DRGKDFNL-ELA-IK-------T 437

Query: 376  KQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
            + I   ++  L TG          Q RAG +    RL F   +S  R V+      G + 
Sbjct: 438  RIISDGLKYSLATGNWGDVKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KL 495

Query: 436  TSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV 495
               R+L    WG +CP  TP+G   GL+ ++     ++                + IL  
Sbjct: 496  AKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEF 544

Query: 496  LIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAA 549
            L    M  +L ++  +       + ++G  VG+    + E+++  LR+L+      VS  
Sbjct: 545  LEEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEV 601

Query: 550  SVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------ 597
            S+I D  E      +  G      L     K +   R+I    E   N            
Sbjct: 602  SMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASGV 661

Query: 598  IELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPR 655
            +E I   E+  V + +   D  + G       TH EIHP+ +L V A++ P+ DHNQSPR
Sbjct: 662  VEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPR 721

Query: 656  NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
            N YQ  M KQ MG  +     R D   + L  PQ P+V T +       E P G N+IVA
Sbjct: 722  NTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVA 781

Query: 716  VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA--- 772
            + +YTGY+ ED++I+N+S+VDRG      Y++     S  G   D+ +   +  ++    
Sbjct: 782  IASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKG--FDQEEIFEKPTRETCQG 839

Query: 773  --KSLHSVIDSDGLPYVGQMIHPGEPY-----CSIYDKTTNSWRTNSR----------KG 815
               +++  +D DGL   G  +  GE        ++ +       TN R          + 
Sbjct: 840  MRHAIYDKLDDDGLIAPGVRVS-GEDVIIGKTVTLPENDDELDSTNRRYTKRDCSTFLRT 898

Query: 816  SESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPF 875
            SE+  VD V V +       +   IR R  R P IGDKF+SRHGQKG C   +   DMPF
Sbjct: 899  SETGIVDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPF 956

Query: 876  SGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGT 935
            +   G+ PD+IINPHA PSRMT+  L+E +  K  +  G+  DATPF ++V         
Sbjct: 957  T-CEGITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVN-------- 1007

Query: 936  DESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQV 995
                  V ++  +L   G++  G EVLY+G  G +LT +IF+GP YYQRL+HMV DK   
Sbjct: 1008 ------VQKVSNLLSEYGYHLRGNEVLYNGFTGRKLTSQIFVGPTYYQRLKHMVDDKIHS 1061

Query: 996  RSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSL 1055
            R+ G +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +RL   SD +   VC+L
Sbjct: 1062 RARGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLKERLFEASDPYQVHVCNL 1121

Query: 1056 CGSVLTA-TFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAEL 1114
            CG +  A T  H  +                   C  C+    +  V MPY  + L  EL
Sbjct: 1122 CGLMAIANTRTHTYE-------------------CRGCRNKTQISLVRMPYACKLLFQEL 1162

Query: 1115 AAMNI 1119
             +M+I
Sbjct: 1163 MSMSI 1167


>gi|194209129|ref|XP_001916826.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB2-like [Equus caballus]
          Length = 1174

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 324/1143 (28%), Positives = 511/1143 (44%), Gaps = 141/1143 (12%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   ++   ++   G+ P+ML++  C L G   
Sbjct: 109  MPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 168

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   + +D +  YT +     
Sbjct: 169  RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGECR--S 223

Query: 151  CVRKD-QSSVTLKLYYLLNGSV---------RLGFWLQGKEYLLPVGIVLKALVDTNDLE 200
            C+    + + T+ +  L  G           R+   L   +  +P+ IV +AL   +D +
Sbjct: 224  CLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRD 283

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +++           P + E VK  L E     +  +   L  IG   +    
Sbjct: 284  ILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAKP 328

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     A+ V++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 329  GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   ++ L++ +   Q  I + GK F+   LA IK       ++
Sbjct: 389  GNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFI-DRGKDFNL-QLA-IK-------TR 438

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   ++  L TG    Q     Q RAG +    RL F   +S  R ++      G +  
Sbjct: 439  IISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLA 496

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G   GL+ ++     ++                + IL  L
Sbjct: 497  KPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  +       + ++G  VG+    + E+++  LR+L+      VS  S
Sbjct: 546  EEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEVS 602

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
            +I D  E      +  G      L     K +   R+I    E   N            +
Sbjct: 603  MIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVV 662

Query: 599  ELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656
            E I   E+  V + +   D  +         TH EIHP+ +L V A++ P+ DHNQSPRN
Sbjct: 663  EYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRN 722

Query: 657  MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
             YQ  M KQ MG  +     R D   + L  PQ P+V T +       E P G N+IVA+
Sbjct: 723  TYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAI 782

Query: 717  LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA---- 772
             +YTGY+ ED++I+N+S+VDRG      Y++     S  G   D+ +   +  ++     
Sbjct: 783  ASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKG--FDQEEVFEKPTRETCQGM 840

Query: 773  -KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGSE 817
              +++  +D DGL   G  +   +       ++ +       TN R          + SE
Sbjct: 841  RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSE 900

Query: 818  SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
            +  VD V V +       +   IR R  R P IGDKF+SRHGQKG C   +   DMPF+ 
Sbjct: 901  TGIVDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT- 957

Query: 878  VTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDE 937
              G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF ++V           
Sbjct: 958  CEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVN---------- 1007

Query: 938  SKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRS 997
                V ++  +L   G++  G EVLY+G  G ++T +IFIGP YYQRL+HMV DK   R+
Sbjct: 1008 ----VQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRA 1063

Query: 998  TGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCG 1057
             G +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +RL   SD +   VC+LCG
Sbjct: 1064 RGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCG 1123

Query: 1058 SVLTA-TFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAA 1116
             +  A T  H  +                   C  C+    +  V MPY  + L  EL +
Sbjct: 1124 IMAIANTRTHTYE-------------------CRGCRNKTQISLVRMPYACKLLFQELMS 1164

Query: 1117 MNI 1119
            M+I
Sbjct: 1165 MSI 1167


>gi|335293559|ref|XP_003129085.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Sus scrofa]
          Length = 1167

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 324/1143 (28%), Positives = 511/1143 (44%), Gaps = 141/1143 (12%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   ++   ++   G+ P+ML++  C L G   
Sbjct: 102  MPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 161

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   + +D +  YT +     
Sbjct: 162  RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGECR--S 216

Query: 151  CVRKD-QSSVTLKLYYLLNGSV---------RLGFWLQGKEYLLPVGIVLKALVDTNDLE 200
            C+    + + T+ +  L  G           R+   L   +  +P+ IV +AL   +D +
Sbjct: 217  CLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRD 276

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +++           P + E VK  L E     +  +   L  IG   +    
Sbjct: 277  ILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAKP 321

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     A+ V++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 322  GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 381

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   ++ L++ +   Q  I + GK F+   LA IK       ++
Sbjct: 382  GNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFI-DRGKDFNL-ELA-IK-------TR 431

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   ++  L TG    Q     Q RAG +    RL F   +S  R ++      G +  
Sbjct: 432  IISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLA 489

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G   GL+ ++     ++                + IL  L
Sbjct: 490  KPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEFL 538

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  +       + ++G  VG+    + E+++  LR+L+      VS  S
Sbjct: 539  EEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEVS 595

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
            +I D  E      +  G      L     K +   R+I    E   N            +
Sbjct: 596  MIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVV 655

Query: 599  ELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656
            E I   E+  V + +   D  +         TH EIHP+ +L V A++ P+ DHNQSPRN
Sbjct: 656  EYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRN 715

Query: 657  MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
             YQ  M KQ MG  +     R D   + L  PQ P+V T +       E P G N+IVA+
Sbjct: 716  TYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAI 775

Query: 717  LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA---- 772
             +YTGY+ ED++I+N+S+VDRG      Y++     S  G   D+ +   +  ++     
Sbjct: 776  ASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKG--FDQEEVFEKPTRETCQGM 833

Query: 773  -KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGSE 817
              +++  +D DGL   G  +   +       ++ +       TN R          + SE
Sbjct: 834  RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELEGTNRRYTKRDCSTFLRTSE 893

Query: 818  SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
            +  VD V V +       +   IR R  R P IGDKF+SRHGQKG C   +   DMPF+ 
Sbjct: 894  TGIVDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT- 950

Query: 878  VTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDE 937
              G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF ++V           
Sbjct: 951  CEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVN---------- 1000

Query: 938  SKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRS 997
                V ++  +L   G++  G EVLY+G  G ++T +IFIGP YYQRL+HMV DK   R+
Sbjct: 1001 ----VQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRA 1056

Query: 998  TGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCG 1057
             G +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +RL   SD +   VC+LCG
Sbjct: 1057 RGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCG 1116

Query: 1058 SVLTA-TFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAA 1116
             +  A T  H  +                   C  C+    +  V MPY  + L  EL +
Sbjct: 1117 IMAIANTRTHTYE-------------------CRGCRNKTQISLVRMPYACKLLFQELMS 1157

Query: 1117 MNI 1119
            M+I
Sbjct: 1158 MSI 1160


>gi|297673507|ref|XP_002814802.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 3
            [Pongo abelii]
 gi|395851371|ref|XP_003798234.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 2
            [Otolemur garnettii]
 gi|410038419|ref|XP_003950401.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Pan
            troglodytes]
          Length = 1099

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 324/1143 (28%), Positives = 511/1143 (44%), Gaps = 141/1143 (12%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   ++   ++   G+ P+ML++  C L G   
Sbjct: 34   MPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 93

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   + +D +  YT +     
Sbjct: 94   RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGECR--S 148

Query: 151  CVRKD-QSSVTLKLYYLLNGSV---------RLGFWLQGKEYLLPVGIVLKALVDTNDLE 200
            C+    + + T+ +  L  G           R+   L   +  +P+ IV +AL   +D +
Sbjct: 149  CLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRD 208

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +++           P + E VK  L E     +  +   L  IG   +    
Sbjct: 209  ILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAKP 253

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     A+ V++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 254  GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 313

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   ++ L++ +   Q  I + GK F+   LA IK       ++
Sbjct: 314  GNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFI-DRGKDFNL-ELA-IK-------TR 363

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   ++  L TG    Q     Q RAG +    RL F   +S  R ++      G +  
Sbjct: 364  IISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLA 421

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G   GL+ ++     ++                + IL  L
Sbjct: 422  KPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEFL 470

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  +       + ++G  VG+    + E+++  LR+L+      VS  S
Sbjct: 471  EEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEVS 527

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
            +I D  E      +  G      L     K +   R+I    E   N            +
Sbjct: 528  MIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVV 587

Query: 599  ELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656
            E I   E+  V + +   D  +         TH EIHP+ +L V A++ P+ DHNQSPRN
Sbjct: 588  EYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRN 647

Query: 657  MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
             YQ  M KQ MG  +     R D   + L  PQ P+V T +       E P G N+IVA+
Sbjct: 648  TYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAI 707

Query: 717  LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA---- 772
             +YTGY+ ED++I+N+S+VDRG      Y++     S  G   D+ +   +  ++     
Sbjct: 708  ASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKG--FDQEEVFEKPTRETCQGM 765

Query: 773  -KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGSE 817
              +++  +D DGL   G  +   +       ++ +       TN R          + SE
Sbjct: 766  RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSE 825

Query: 818  SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
            +  VD V V +       +   IR R  R P IGDKF+SRHGQKG C   +   DMPF+ 
Sbjct: 826  TGIVDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT- 882

Query: 878  VTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDE 937
              G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF ++V           
Sbjct: 883  CEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVN---------- 932

Query: 938  SKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRS 997
                V ++  +L   G++  G EVLY+G  G ++T +IFIGP YYQRL+HMV DK   R+
Sbjct: 933  ----VQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRA 988

Query: 998  TGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCG 1057
             G +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +RL   SD +   VC+LCG
Sbjct: 989  RGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCG 1048

Query: 1058 SVLTA-TFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAA 1116
             +  A T  H  +                   C  C+    +  V MPY  + L  EL +
Sbjct: 1049 IMAIANTRTHTYE-------------------CRGCRNKTQISLVRMPYACKLLFQELMS 1089

Query: 1117 MNI 1119
            M+I
Sbjct: 1090 MSI 1092


>gi|4505941|ref|NP_000929.1| DNA-directed RNA polymerase II subunit RPB2 [Homo sapiens]
 gi|157822127|ref|NP_001099472.1| DNA-directed RNA polymerase II subunit RPB2 [Rattus norvegicus]
 gi|387849108|ref|NP_001248426.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca mulatta]
 gi|114594586|ref|XP_517275.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 2 [Pan
            troglodytes]
 gi|296196473|ref|XP_002745851.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Callithrix
            jacchus]
 gi|297673513|ref|XP_002814803.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 4
            [Pongo abelii]
 gi|332238537|ref|XP_003268457.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Nomascus
            leucogenys]
 gi|348571889|ref|XP_003471727.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Cavia
            porcellus]
 gi|354498860|ref|XP_003511530.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
            [Cricetulus griseus]
 gi|395851369|ref|XP_003798233.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 1
            [Otolemur garnettii]
 gi|402869719|ref|XP_003898895.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 1
            [Papio anubis]
 gi|401012|sp|P30876.1|RPB2_HUMAN RecName: Full=DNA-directed RNA polymerase II subunit RPB2; AltName:
            Full=DNA-directed RNA polymerase II 140 kDa polypeptide;
            AltName: Full=DNA-directed RNA polymerase II subunit B;
            AltName: Full=RNA polymerase II subunit 2; AltName:
            Full=RNA polymerase II subunit B2
 gi|36122|emb|CAA45124.1| RNA polymerase II 140 kDa subunit [Homo sapiens]
 gi|254869|gb|AAB23139.1| RNA polymerase II second largest subunit, RNA polymerase B second
            largest subunit [human, HeLa cells, Peptide, 1174 aa]
 gi|33870592|gb|AAH23503.2| Polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Homo
            sapiens]
 gi|119625924|gb|EAX05519.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Homo
            sapiens]
 gi|149035168|gb|EDL89872.1| polymerase (RNA) II (DNA directed) polypeptide B (predicted) [Rattus
            norvegicus]
 gi|158260669|dbj|BAF82512.1| unnamed protein product [Homo sapiens]
 gi|168277428|dbj|BAG10692.1| DNA-directed RNA polymerase II subunit RPB2 [synthetic construct]
 gi|355749385|gb|EHH53784.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca fascicularis]
 gi|380783295|gb|AFE63523.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca mulatta]
 gi|383413177|gb|AFH29802.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca mulatta]
 gi|384941246|gb|AFI34228.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca mulatta]
 gi|410224966|gb|JAA09702.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
            troglodytes]
 gi|410261216|gb|JAA18574.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
            troglodytes]
 gi|410306896|gb|JAA32048.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
            troglodytes]
 gi|410306898|gb|JAA32049.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
            troglodytes]
 gi|410306900|gb|JAA32050.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
            troglodytes]
 gi|410350135|gb|JAA41671.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
            troglodytes]
          Length = 1174

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 324/1143 (28%), Positives = 511/1143 (44%), Gaps = 141/1143 (12%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   ++   ++   G+ P+ML++  C L G   
Sbjct: 109  MPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 168

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   + +D +  YT +     
Sbjct: 169  RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGECR--S 223

Query: 151  CVRKD-QSSVTLKLYYLLNGSV---------RLGFWLQGKEYLLPVGIVLKALVDTNDLE 200
            C+    + + T+ +  L  G           R+   L   +  +P+ IV +AL   +D +
Sbjct: 224  CLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRD 283

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +++           P + E VK  L E     +  +   L  IG   +    
Sbjct: 284  ILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAKP 328

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     A+ V++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 329  GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   ++ L++ +   Q  I + GK F+   LA IK       ++
Sbjct: 389  GNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFI-DRGKDFNL-ELA-IK-------TR 438

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   ++  L TG    Q     Q RAG +    RL F   +S  R ++      G +  
Sbjct: 439  IISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLA 496

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G   GL+ ++     ++                + IL  L
Sbjct: 497  KPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  +       + ++G  VG+    + E+++  LR+L+      VS  S
Sbjct: 546  EEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEVS 602

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
            +I D  E      +  G      L     K +   R+I    E   N            +
Sbjct: 603  MIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVV 662

Query: 599  ELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656
            E I   E+  V + +   D  +         TH EIHP+ +L V A++ P+ DHNQSPRN
Sbjct: 663  EYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRN 722

Query: 657  MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
             YQ  M KQ MG  +     R D   + L  PQ P+V T +       E P G N+IVA+
Sbjct: 723  TYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAI 782

Query: 717  LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA---- 772
             +YTGY+ ED++I+N+S+VDRG      Y++     S  G   D+ +   +  ++     
Sbjct: 783  ASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKG--FDQEEVFEKPTRETCQGM 840

Query: 773  -KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGSE 817
              +++  +D DGL   G  +   +       ++ +       TN R          + SE
Sbjct: 841  RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSE 900

Query: 818  SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
            +  VD V V +       +   IR R  R P IGDKF+SRHGQKG C   +   DMPF+ 
Sbjct: 901  TGIVDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT- 957

Query: 878  VTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDE 937
              G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF ++V           
Sbjct: 958  CEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVN---------- 1007

Query: 938  SKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRS 997
                V ++  +L   G++  G EVLY+G  G ++T +IFIGP YYQRL+HMV DK   R+
Sbjct: 1008 ----VQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRA 1063

Query: 998  TGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCG 1057
             G +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +RL   SD +   VC+LCG
Sbjct: 1064 RGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCG 1123

Query: 1058 SVLTA-TFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAA 1116
             +  A T  H  +                   C  C+    +  V MPY  + L  EL +
Sbjct: 1124 IMAIANTRTHTYE-------------------CRGCRNKTQISLVRMPYACKLLFQELMS 1164

Query: 1117 MNI 1119
            M+I
Sbjct: 1165 MSI 1167


>gi|397469837|ref|XP_003806546.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Pan paniscus]
          Length = 1226

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 324/1143 (28%), Positives = 511/1143 (44%), Gaps = 141/1143 (12%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   ++   ++   G+ P+ML++  C L G   
Sbjct: 161  MPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 220

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   + +D +  YT +     
Sbjct: 221  RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGECR--S 275

Query: 151  CVRKD-QSSVTLKLYYLLNGSV---------RLGFWLQGKEYLLPVGIVLKALVDTNDLE 200
            C+    + + T+ +  L  G           R+   L   +  +P+ IV +AL   +D +
Sbjct: 276  CLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRD 335

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +++           P + E VK  L E     +  +   L  IG   +    
Sbjct: 336  ILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAKP 380

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     A+ V++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 381  GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 440

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   ++ L++ +   Q  I + GK F+   LA IK       ++
Sbjct: 441  GNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFI-DRGKDFNL-ELA-IK-------TR 490

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   ++  L TG    Q     Q RAG +    RL F   +S  R ++      G +  
Sbjct: 491  IISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLA 548

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G   GL+ ++     ++                + IL  L
Sbjct: 549  KPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEFL 597

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  +       + ++G  VG+    + E+++  LR+L+      VS  S
Sbjct: 598  EEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEVS 654

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
            +I D  E      +  G      L     K +   R+I    E   N            +
Sbjct: 655  MIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVV 714

Query: 599  ELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656
            E I   E+  V + +   D  +         TH EIHP+ +L V A++ P+ DHNQSPRN
Sbjct: 715  EYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRN 774

Query: 657  MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
             YQ  M KQ MG  +     R D   + L  PQ P+V T +       E P G N+IVA+
Sbjct: 775  TYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAI 834

Query: 717  LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA---- 772
             +YTGY+ ED++I+N+S+VDRG      Y++     S  G   D+ +   +  ++     
Sbjct: 835  ASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKG--FDQEEVFEKPTRETCQGM 892

Query: 773  -KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGSE 817
              +++  +D DGL   G  +   +       ++ +       TN R          + SE
Sbjct: 893  RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSE 952

Query: 818  SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
            +  VD V V +       +   IR R  R P IGDKF+SRHGQKG C   +   DMPF+ 
Sbjct: 953  TGIVDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT- 1009

Query: 878  VTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDE 937
              G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF ++V           
Sbjct: 1010 CEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVN---------- 1059

Query: 938  SKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRS 997
                V ++  +L   G++  G EVLY+G  G ++T +IFIGP YYQRL+HMV DK   R+
Sbjct: 1060 ----VQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRA 1115

Query: 998  TGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCG 1057
             G +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +RL   SD +   VC+LCG
Sbjct: 1116 RGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCG 1175

Query: 1058 SVLTA-TFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAA 1116
             +  A T  H  +                   C  C+    +  V MPY  + L  EL +
Sbjct: 1176 IMAIANTRTHTYE-------------------CRGCRNKTQISLVRMPYACKLLFQELMS 1216

Query: 1117 MNI 1119
            M+I
Sbjct: 1217 MSI 1219


>gi|291190610|ref|NP_001167150.1| DNA-directed RNA polymerase II subunit RPB2 [Salmo salar]
 gi|223648370|gb|ACN10943.1| DNA-directed RNA polymerase II subunit RPB2 [Salmo salar]
          Length = 1174

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 327/1147 (28%), Positives = 509/1147 (44%), Gaps = 149/1147 (12%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   ++   ++   G+ P+ML++  C L G   
Sbjct: 109  MPNEARLRNLTYSAPLYVDITKTIIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLSGLTD 168

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   + +D +  YT +    R
Sbjct: 169  RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGEC---R 222

Query: 151  CVRKDQSSVTLKLYYLLNG-----------SVRLGFWLQGKEYLLPVGIVLKALVDTNDL 199
               ++ S  T  ++  +               R+   L      +P+ IV +AL   +D 
Sbjct: 223  SCLENSSRPTSSIWVSMMARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDR 282

Query: 200  EIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVI 259
            +I  H+   +D+           P + E VK  L E     +  +   L  IG   +   
Sbjct: 283  DILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAK 327

Query: 260  DGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
             G+  E     A+ V++  +  H+  ++     K   L +M+ +L          D+ D 
Sbjct: 328  PGVTKERRIKYAKEVLQKEVLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDH 387

Query: 316  LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPS 375
              N+ + L G L+    +   ++ L++ +   Q  I + GK F+   LA IK       +
Sbjct: 388  YGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQKFI-DRGKDFN-LELA-IK-------T 437

Query: 376  KQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
            + I   ++  L TG          Q RAG +    RL F   +S  R V+      G + 
Sbjct: 438  RIISDGLKYSLATGNWGDVKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KL 495

Query: 436  TSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV 495
               R+L    WG +CP  TP+G   GL+ ++     ++                + IL  
Sbjct: 496  AKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEF 544

Query: 496  LIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAA 549
            L    M  +L ++  +       + ++G  VG+    + E+++  LR+L+      VS  
Sbjct: 545  LEEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEV 601

Query: 550  SVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------ 597
            S+I D  E      +  G      L     K +   R+I    E   N            
Sbjct: 602  SMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASGV 661

Query: 598  IELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPR 655
            +E I   E+  V + +   D  + G       +H EIHP+ +L V A++ P+ DHNQSPR
Sbjct: 662  VEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYSHCEIHPSMILGVCASIIPFPDHNQSPR 721

Query: 656  NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
            N YQ  M KQ MG  +     R D   + L  PQ P+V T +       E P G N+IVA
Sbjct: 722  NTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVA 781

Query: 716  VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKS- 774
            + AYTGY+ ED++I+N+S+VDRG      Y++     S  G   D+ +   +  ++  S 
Sbjct: 782  IAAYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKG--FDQEEIFEKPTRETCSG 839

Query: 775  ----LHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR----------------- 813
                ++  +D DGL   G  +  GE    I  KT     T+                   
Sbjct: 840  MRHAIYDKLDDDGLIAPGVRVS-GEDV--IIGKTVTLPETDDELDSTNRRYTKRDCSTFL 896

Query: 814  KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDM 873
            + SE+  VD V V +       +   IR R  R P IGDKF+SRHGQKG C   +   DM
Sbjct: 897  RTSETGIVDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDM 954

Query: 874  PFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDT 933
            PF+   G+ PD+IINPHA PSRMT+  L+E +  K  +  G+  DATPF ++V       
Sbjct: 955  PFT-CEGITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVN------ 1007

Query: 934  GTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKF 993
                    V ++  +L   G++  G EVLY+G  G ++T +IF+GP YYQRL+HMV DK 
Sbjct: 1008 --------VQKVSNLLSEYGYHLRGNEVLYNGFTGRKITSQIFLGPTYYQRLKHMVDDKI 1059

Query: 994  QVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVC 1053
              R+ G +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +RL   SD +   VC
Sbjct: 1060 HSRARGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVC 1119

Query: 1054 SLCGSVLTA-TFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAA 1112
            +LCG +  A T  H  +                   C  C+    +  V MPY  + L  
Sbjct: 1120 NLCGLMAIANTRTHTYE-------------------CRGCRNKTQISLVRMPYACKLLFQ 1160

Query: 1113 ELAAMNI 1119
            EL +M+I
Sbjct: 1161 ELMSMSI 1167


>gi|226958589|ref|NP_722493.2| DNA-directed RNA polymerase II subunit RPB2 [Mus musculus]
 gi|51702009|sp|Q8CFI7.2|RPB2_MOUSE RecName: Full=DNA-directed RNA polymerase II subunit RPB2; AltName:
            Full=DNA-directed RNA polymerase II 140 kDa polypeptide;
            AltName: Full=DNA-directed RNA polymerase II subunit B;
            AltName: Full=RNA polymerase II subunit 2; AltName:
            Full=RNA polymerase II subunit B2
 gi|148705989|gb|EDL37936.1| polymerase (RNA) II (DNA directed) polypeptide B [Mus musculus]
          Length = 1174

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 324/1143 (28%), Positives = 511/1143 (44%), Gaps = 141/1143 (12%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   ++   ++   G+ P+ML++  C L G   
Sbjct: 109  MPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 168

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   + +D +  YT +     
Sbjct: 169  RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGECR--S 223

Query: 151  CVRKD-QSSVTLKLYYLLNGSV---------RLGFWLQGKEYLLPVGIVLKALVDTNDLE 200
            C+    + + T+ +  L  G           R+   L   +  +P+ IV +AL   +D +
Sbjct: 224  CLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRD 283

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +++           P + E VK  L E     +  +   L  IG   +    
Sbjct: 284  ILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAKP 328

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     A+ V++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 329  GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   ++ L++ +   Q  I + GK F+   LA IK       ++
Sbjct: 389  GNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFI-DRGKDFNL-ELA-IK-------TR 438

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   ++  L TG    Q     Q RAG +    RL F   +S  R ++      G +  
Sbjct: 439  IISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLA 496

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G   GL+ ++     ++                + IL  L
Sbjct: 497  KPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  +       + ++G  VG+    + E+++  LR+L+      VS  S
Sbjct: 546  EEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEVS 602

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
            +I D  E      +  G      L     K +   R+I    E   N            +
Sbjct: 603  MIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVV 662

Query: 599  ELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656
            E I   E+  V + +   D  +         TH EIHP+ +L V A++ P+ DHNQSPRN
Sbjct: 663  EYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRN 722

Query: 657  MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
             YQ  M KQ MG  +     R D   + L  PQ P+V T +       E P G N+IVA+
Sbjct: 723  TYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAI 782

Query: 717  LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA---- 772
             +YTGY+ ED++I+N+S+VDRG      Y++     S  G   D+ +   +  ++     
Sbjct: 783  ASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKG--FDQEEVFEKPTRETCQGM 840

Query: 773  -KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGSE 817
              +++  +D DGL   G  +   +       ++ +       TN R          + SE
Sbjct: 841  RHAIYEKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSE 900

Query: 818  SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
            +  VD V V +       +   IR R  R P IGDKF+SRHGQKG C   +   DMPF+ 
Sbjct: 901  TGIVDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT- 957

Query: 878  VTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDE 937
              G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF ++V           
Sbjct: 958  CEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVN---------- 1007

Query: 938  SKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRS 997
                V ++  +L   G++  G EVLY+G  G ++T +IFIGP YYQRL+HMV DK   R+
Sbjct: 1008 ----VQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRA 1063

Query: 998  TGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCG 1057
             G +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +RL   SD +   VC+LCG
Sbjct: 1064 RGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCG 1123

Query: 1058 SVLTA-TFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAA 1116
             +  A T  H  +                   C  C+    +  V MPY  + L  EL +
Sbjct: 1124 IMAIANTRTHTYE-------------------CRGCRNKTQISLVRMPYACKLLFQELMS 1164

Query: 1117 MNI 1119
            M+I
Sbjct: 1165 MSI 1167


>gi|66356606|ref|XP_625481.1| DNA-directed RNA polymerase beta subunit [Cryptosporidium parvum Iowa
            II]
 gi|46226475|gb|EAK87469.1| DNA-directed RNA polymerase beta subunit [Cryptosporidium parvum Iowa
            II]
          Length = 1287

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 341/1200 (28%), Positives = 517/1200 (43%), Gaps = 226/1200 (18%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR   I+Y   +  DV+  Y+   + V ++    G+ PVML+++ C L G  + ++V L 
Sbjct: 187  CRMRDITYAAPIFVDVD--YVRGNTVVRKKNVEIGRIPVMLRSKVCILHGKTAAEMVKLN 244

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            E   + GGYF++ G E+     IL ++    + +     D +  Y           K ++
Sbjct: 245  ECPHDPGGYFVVKGTEKA----ILMQEQLSKNRIIVEL-DNKHNYCATVTSTTAESKSRT 299

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
             V  K     NG + L       E  +P+ IVLKA+    + EIF  +    +E + +E 
Sbjct: 300  LVVFK-----NGKLYLRHNSFSDE--IPLCIVLKAMGIETEQEIFFMIG---NEPHHQE- 348

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGE------------------------ 253
            G + S          L EV    + T+ Q L  + +                        
Sbjct: 349  GIINS----------LQEVHQEGIFTQRQALLFMSKKAKSKFKSTFGSSRGFDKSNAEES 398

Query: 254  -------HFQPVIDGLQSESYYAVAET---VIRDYIFVHLNDNNDKFNLLIFMLQKLFSL 303
                    F      L   S   V ET   V+  +I     D + K   L  M +++   
Sbjct: 399  AENSGFTEFGGSKSSLCGTSIDDVLETLNRVLLSHIGTIYTDLHPKALFLCLMAKRVLDA 458

Query: 304  VDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNL 363
             +  S+ D+ D   N+ I L G LI+I      ED  ++   L + +I+    ++  F  
Sbjct: 459  SEDNSLLDDKDYYGNKRIELAGQLISILF----EDLFKRFSVLTKKQIDQTLIRY--FQT 512

Query: 364  ANIKKV--------------MEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQA 409
             +  K                   P+  I   ++T L TG  + +      +R+G T   
Sbjct: 513  RDASKAGTGRDDSNSTYPDCFRNLPTDIITRGMQTALSTGNWSIKRFR--MERSGMTQVL 570

Query: 410  ERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTS 468
             R +++  +     V   + F   R  S  R L P  WG LCP  TP+GE CGL+ ++  
Sbjct: 571  TRFSYIASLGIMTRVD--SQFEKARKVSGPRALQPSQWGILCPCDTPEGESCGLVKNLAL 628

Query: 469  TCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKL-----------------VKS 511
            T  + +         D      + L   +GV  I S   L                   S
Sbjct: 629  TTHITT---------DHCPQYLTSLLFTLGVQDISSCSYLDFNTKQSEKLSNEDLKNESS 679

Query: 512  GPPAVLS---VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVG-YVPLSLGG 567
            G   V     V ++G ++GV    E+  + + LR L+            +G +V +    
Sbjct: 680  GKNNVKKHYYVSINGSLLGVHRKPEL--LASQLRNLRRKGF--------IGQFVSIFCNH 729

Query: 568  AYPGLYLFTSPPKFVRP--VRNISLPSEESQNIELIGPFEQVFMEIRCP---DGGDGGRR 622
             +  + + T   +  RP  + +  +P  + ++IE +   E +F +       +  D    
Sbjct: 730  IHSSVQIATDGGRLCRPLIIVDQGVPRLKEEHIEQLKRGEIIFSDFISQGILEWIDVNEE 789

Query: 623  NAF-----------PATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSV 671
            N               TH EI P  +L VV+ L PY +HNQSPRN YQC M KQ MG SV
Sbjct: 790  NNLLIALRDENLTNETTHLEIDPLSILGVVSGLIPYPNHNQSPRNTYQCAMGKQVMG-SV 848

Query: 672  QALKF-RADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMIL 730
               +F R D  LY L  PQ P+ +T T      ++ P G N+ VAV+++ GYD+EDA+++
Sbjct: 849  GFNQFLRCDSVLYLLVYPQKPLCKTRTIEMINFEQLPAGQNSSVAVMSFAGYDIEDAIVM 908

Query: 731  NKSSVDRGMCHGQIYQTETIDLSDDGNKV-------------DRGQKLFRRNKDAKSLHS 777
            NK+SVDRG     + + +TI+L    N +             + G + F    D     S
Sbjct: 909  NKASVDRGFARCFVMKRQTIELQKLPNGLSERVVRPISVGSGNTGNRRFSFKND-----S 963

Query: 778  VIDSDGLPYVGQMI-----------------HPGEPYCSIYDKTTNSWRTNSRKGSESVF 820
            ++D+DG+  VG  +                 + G+P  S +D +         KG  S +
Sbjct: 964  ILDNDGVCNVGVQVSEDDIIVNKMSPINTREYVGDP--SQFDLSEYKPSPVKYKGPTSSY 1021

Query: 821  VDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTG 880
            +D V +      N  Q   +  R TR P +GDKFSSRHGQKGV   +    D+PFS  TG
Sbjct: 1022 IDRVILTENADGN--QIYKVITRQTRRPELGDKFSSRHGQKGVVGLIISQEDLPFSE-TG 1078

Query: 881  MRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDES-K 939
              PDLI+NPH FPSRMT+  LLE +++K   L G +   T F        G T  +ES K
Sbjct: 1079 WCPDLIMNPHGFPSRMTVGKLLELISSKASVLDGNYRYGTAF--------GGTPLEESAK 1130

Query: 940  SLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTG 999
             LV+         GF+Y G E L SG  G  +   IF+GP+YYQ+L+HMV DK   R  G
Sbjct: 1131 CLVEH--------GFHYSGKEYLTSGTTGEAIEAYIFVGPIYYQKLKHMVLDKMHARGRG 1182

Query: 1000 TMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSV 1059
                +TRQP +GR + GG+R GEMERD L+A+GA+ LL +RL   SD    +VC+ CG  
Sbjct: 1183 PRQILTRQPTEGRSKDGGLRLGEMERDCLVAYGASNLLIERLMLNSDVFETNVCNQCGLF 1242

Query: 1060 LTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
                +                        CH C++S+ +  + +PY  + L  EL AMN+
Sbjct: 1243 GYNNY------------------------CHYCKSSQDVSIIRLPYACKLLFQELQAMNV 1278


>gi|417413545|gb|JAA53095.1| Putative rna polymerase i second largest subunit, partial [Desmodus
            rotundus]
          Length = 1144

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 324/1143 (28%), Positives = 511/1143 (44%), Gaps = 141/1143 (12%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   ++   ++   G+ P+ML++  C L G   
Sbjct: 79   MPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 138

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   + +D +  YT +     
Sbjct: 139  RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGECR--S 193

Query: 151  CVRKD-QSSVTLKLYYLLNGSV---------RLGFWLQGKEYLLPVGIVLKALVDTNDLE 200
            C+    + + T+ +  L  G           R+   L   +  +P+ IV +AL   +D +
Sbjct: 194  CLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRD 253

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +++           P + E VK  L E     +  +   L  IG   +    
Sbjct: 254  ILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAKP 298

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     A+ V++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 299  GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 358

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   ++ L++ +   Q  I + GK F+   LA IK       ++
Sbjct: 359  GNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFI-DRGKDFNL-ELA-IK-------TR 408

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   ++  L TG    Q     Q RAG +    RL F   +S  R ++      G +  
Sbjct: 409  IISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLA 466

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G   GL+ ++     ++                + IL  L
Sbjct: 467  KPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEFL 515

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  +       + ++G  VG+    + E+++  LR+L+      VS  S
Sbjct: 516  EEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEVS 572

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
            +I D  E      +  G      L     K +   R+I    E   N            +
Sbjct: 573  MIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVV 632

Query: 599  ELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656
            E I   E+  V + +   D  +         TH EIHP+ +L V A++ P+ DHNQSPRN
Sbjct: 633  EYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRN 692

Query: 657  MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
             YQ  M KQ MG  +     R D   + L  PQ P+V T +       E P G N+IVA+
Sbjct: 693  TYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAI 752

Query: 717  LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA---- 772
             +YTGY+ ED++I+N+S+VDRG      Y++     S  G   D+ +   +  ++     
Sbjct: 753  ASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKG--FDQEEVFEKPTRETCQGM 810

Query: 773  -KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGSE 817
              +++  +D DGL   G  +   +       ++ +       TN R          + SE
Sbjct: 811  RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSE 870

Query: 818  SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
            +  VD V V +       +   IR R  R P IGDKF+SRHGQKG C   +   DMPF+ 
Sbjct: 871  TGIVDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT- 927

Query: 878  VTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDE 937
              G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF ++V           
Sbjct: 928  CEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVN---------- 977

Query: 938  SKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRS 997
                V ++  +L   G++  G EVLY+G  G ++T +IFIGP YYQRL+HMV DK   R+
Sbjct: 978  ----VQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRA 1033

Query: 998  TGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCG 1057
             G +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +RL   SD +   VC+LCG
Sbjct: 1034 RGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCG 1093

Query: 1058 SVLTA-TFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAA 1116
             +  A T  H  +                   C  C+    +  V MPY  + L  EL +
Sbjct: 1094 IMAIANTRTHTYE-------------------CRGCRNKTQISLVRMPYACKLLFQELMS 1134

Query: 1117 MNI 1119
            M+I
Sbjct: 1135 MSI 1137


>gi|281352499|gb|EFB28083.1| hypothetical protein PANDA_006563 [Ailuropoda melanoleuca]
          Length = 1168

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 324/1143 (28%), Positives = 511/1143 (44%), Gaps = 141/1143 (12%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   ++   ++   G+ P+ML++  C L G   
Sbjct: 103  MPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 162

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   + +D +  YT +     
Sbjct: 163  RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGECR--S 217

Query: 151  CVRKD-QSSVTLKLYYLLNGSV---------RLGFWLQGKEYLLPVGIVLKALVDTNDLE 200
            C+    + + T+ +  L  G           R+   L   +  +P+ IV +AL   +D +
Sbjct: 218  CLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRD 277

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +++           P + E VK  L E     +  +   L  IG   +    
Sbjct: 278  ILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAKP 322

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     A+ V++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 323  GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 382

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   ++ L++ +   Q  I + GK F+   LA IK       ++
Sbjct: 383  GNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFI-DRGKDFNL-ELA-IK-------TR 432

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   ++  L TG    Q     Q RAG +    RL F   +S  R ++      G +  
Sbjct: 433  IISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLA 490

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G   GL+ ++     ++                + IL  L
Sbjct: 491  KPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEFL 539

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  +       + ++G  VG+    + E+++  LR+L+      VS  S
Sbjct: 540  EEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEVS 596

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
            +I D  E      +  G      L     K +   R+I    E   N            +
Sbjct: 597  MIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVV 656

Query: 599  ELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656
            E I   E+  V + +   D  +         TH EIHP+ +L V A++ P+ DHNQSPRN
Sbjct: 657  EYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRN 716

Query: 657  MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
             YQ  M KQ MG  +     R D   + L  PQ P+V T +       E P G N+IVA+
Sbjct: 717  TYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAI 776

Query: 717  LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA---- 772
             +YTGY+ ED++I+N+S+VDRG      Y++     S  G   D+ +   +  ++     
Sbjct: 777  ASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKG--FDQEEVFEKPTRETCQGM 834

Query: 773  -KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGSE 817
              +++  +D DGL   G  +   +       ++ +       TN R          + SE
Sbjct: 835  RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELEGTNRRYTKRDCSTFLRTSE 894

Query: 818  SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
            +  VD V V +       +   IR R  R P IGDKF+SRHGQKG C   +   DMPF+ 
Sbjct: 895  TGIVDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT- 951

Query: 878  VTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDE 937
              G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF ++V           
Sbjct: 952  CEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVN---------- 1001

Query: 938  SKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRS 997
                V ++  +L   G++  G EVLY+G  G ++T +IFIGP YYQRL+HMV DK   R+
Sbjct: 1002 ----VQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRA 1057

Query: 998  TGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCG 1057
             G +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +RL   SD +   VC+LCG
Sbjct: 1058 RGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCG 1117

Query: 1058 SVLTA-TFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAA 1116
             +  A T  H  +                   C  C+    +  V MPY  + L  EL +
Sbjct: 1118 IMAIANTRTHTYE-------------------CRGCRNKTQISLVRMPYACKLLFQELMS 1158

Query: 1117 MNI 1119
            M+I
Sbjct: 1159 MSI 1161


>gi|73975081|ref|XP_861044.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 17
            [Canis lupus familiaris]
 gi|410957579|ref|XP_003985403.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 2
            [Felis catus]
          Length = 1099

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 324/1143 (28%), Positives = 511/1143 (44%), Gaps = 141/1143 (12%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   ++   ++   G+ P+ML++  C L G   
Sbjct: 34   MPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 93

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   + +D +  YT +     
Sbjct: 94   RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGECR--S 148

Query: 151  CVRKD-QSSVTLKLYYLLNGSV---------RLGFWLQGKEYLLPVGIVLKALVDTNDLE 200
            C+    + + T+ +  L  G           R+   L   +  +P+ IV +AL   +D +
Sbjct: 149  CLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRD 208

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +++           P + E VK  L E     +  +   L  IG   +    
Sbjct: 209  ILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAKP 253

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     A+ V++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 254  GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 313

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   ++ L++ +   Q  I + GK F+   LA IK       ++
Sbjct: 314  GNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFI-DRGKDFNL-ELA-IK-------TR 363

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   ++  L TG    Q     Q RAG +    RL F   +S  R ++      G +  
Sbjct: 364  IISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLA 421

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G   GL+ ++     ++                + IL  L
Sbjct: 422  KPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEFL 470

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  +       + ++G  VG+    + E+++  LR+L+      VS  S
Sbjct: 471  EEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEVS 527

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
            +I D  E      +  G      L     K +   R+I    E   N            +
Sbjct: 528  MIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVV 587

Query: 599  ELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656
            E I   E+  V + +   D  +         TH EIHP+ +L V A++ P+ DHNQSPRN
Sbjct: 588  EYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRN 647

Query: 657  MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
             YQ  M KQ MG  +     R D   + L  PQ P+V T +       E P G N+IVA+
Sbjct: 648  TYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAI 707

Query: 717  LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA---- 772
             +YTGY+ ED++I+N+S+VDRG      Y++     S  G   D+ +   +  ++     
Sbjct: 708  ASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKG--FDQEEVFEKPTRETCQGM 765

Query: 773  -KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGSE 817
              +++  +D DGL   G  +   +       ++ +       TN R          + SE
Sbjct: 766  RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELEGTNRRYTKRDCSTFLRTSE 825

Query: 818  SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
            +  VD V V +       +   IR R  R P IGDKF+SRHGQKG C   +   DMPF+ 
Sbjct: 826  TGIVDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT- 882

Query: 878  VTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDE 937
              G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF ++V           
Sbjct: 883  CEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVN---------- 932

Query: 938  SKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRS 997
                V ++  +L   G++  G EVLY+G  G ++T +IFIGP YYQRL+HMV DK   R+
Sbjct: 933  ----VQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRA 988

Query: 998  TGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCG 1057
             G +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +RL   SD +   VC+LCG
Sbjct: 989  RGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCG 1048

Query: 1058 SVLTA-TFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAA 1116
             +  A T  H  +                   C  C+    +  V MPY  + L  EL +
Sbjct: 1049 IMAIANTRTHTYE-------------------CRGCRNKTQISLVRMPYACKLLFQELMS 1089

Query: 1117 MNI 1119
            M+I
Sbjct: 1090 MSI 1092


>gi|324120612|dbj|BAJ78697.1| RNA polymerase II second largest subunit [Ephemera japonica]
          Length = 1179

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 324/1151 (28%), Positives = 517/1151 (44%), Gaps = 156/1151 (13%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   V    ++   G+ P+ML++  C L G   
Sbjct: 113  MPNEARLRNLTYSAPLYVDITKLVVKDGENTVETQHQKTFIGKIPIMLRSTYCLLSGLSD 172

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   + +D +  Y  +   IR
Sbjct: 173  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAMKDGKFAYKAE---IR 226

Query: 151  CVRKDQSSVTLKLYYLLNGSVRLGFWLQ----GKEYL---------LPVGIVLKALVDTN 197
              ++  S  T  L+  +N   R G  ++    G+  +         +P+ IV +AL    
Sbjct: 227  SCQEHSSRPTSTLW--VNMMARSGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVA 284

Query: 198  DLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQP 257
            D +I  H+   +D+           P + E VK  L E     +  +   L  IG   + 
Sbjct: 285  DRDILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RG 329

Query: 258  VIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNP 313
               G+  E     A  +++  +  H+  ++     K   L +M+ +L          D+ 
Sbjct: 330  ARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALSRRELDDR 389

Query: 314  DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKN 373
            D   N+ + L G L+    +   ++ +++ +   Q  I + GK F+   LA IK      
Sbjct: 390  DHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFI-DRGKDFNL-ELA-IK------ 440

Query: 374  PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
             +K I   +   L TG    Q     Q RAG +    RL F   +S  R V+      G 
Sbjct: 441  -TKIITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG- 497

Query: 434  RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
            +    R+L    WG +CP  TP+G   GL+ ++     ++                + IL
Sbjct: 498  KLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPIL 546

Query: 494  RVLIGVGMIPSLPKLVKSGPPAVLS---VLLDGRVVGVIPSSEIEKVVAHLRRLK----- 545
              L       S+  L +  P A+L    + ++G  VG+    + E++++ LR+L+     
Sbjct: 547  EFLEEW----SMENLEEIAPSAILDATKIFVNGCWVGI--HRDPEQLMSTLRKLRRQMDI 600

Query: 546  -VSAASVIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN----- 597
             VS  S+I D  D E+  +    G     L +  +    ++ V    L   +  N     
Sbjct: 601  IVSEVSMIRDIRDREI-RIYTDAGRICRPLLIVENGSLLLKKVHIDMLKDRDYNNYGWQF 659

Query: 598  ------IELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYS 648
                  +E I   E+   M    PD  +  +  A+  T  H EIHP  +L V A++ P+ 
Sbjct: 660  LVSSGVVEYIDTLEEETVMIAMSPDDLNHEKEYAYCTTYTHCEIHPAMILGVCASIIPFP 719

Query: 649  DHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPT 708
            DHNQSPRN YQ  M KQ MG  +     R D   + L  PQ P+V T +       E P 
Sbjct: 720  DHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPA 779

Query: 709  GTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRR 768
            G N++VA+  YTGY+ ED++I+N S+V+RG      Y++       +  K+   ++ F +
Sbjct: 780  GINSVVAIACYTGYNQEDSVIMNASAVERGFFRSIFYRSYK---DQESKKIGDQEEQFEK 836

Query: 769  NKDA------KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTN 811
               A       +++  +D DG+             +G+ I   E    +   T    + +
Sbjct: 837  PNRATCQGMRNAIYDKLDDDGIIAPGVRVSGDDVIIGKTITLPENDDELEGSTKKYVKRD 896

Query: 812  SR---KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLW 868
            +    + SE+  VD V + + NS+   + + IR R  R P IGDKF+SRHGQKG C   +
Sbjct: 897  ASTFLRNSETGIVDQVMITL-NSEGY-KFSKIRVRSVRIPQIGDKFASRHGQKGTCGIQY 954

Query: 869  PDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKK 928
               DMPF+   G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF ++V  
Sbjct: 955  RQEDMPFT-CEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVN- 1012

Query: 929  TNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHM 988
                         V ++  +L+  G++  G EV+Y+G  G ++  +IF+GP YYQRL+HM
Sbjct: 1013 -------------VQKISSLLQEYGYHLRGNEVMYNGHTGRKINAQIFLGPTYYQRLKHM 1059

Query: 989  VSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYH 1048
            V DK   R+ G +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +RL   SD +
Sbjct: 1060 VDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPY 1119

Query: 1049 VADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFR 1108
               VC+ CG +  A   +                      C  C+    +  V +PY  +
Sbjct: 1120 RIHVCNFCGLIAIANLRN------------------NTFECKGCKNKTQISQVRLPYAAK 1161

Query: 1109 YLAAELAAMNI 1119
             L  EL +MNI
Sbjct: 1162 LLFQELMSMNI 1172


>gi|154707850|ref|NP_001092552.1| DNA-directed RNA polymerase II subunit RPB2 [Bos taurus]
 gi|73975053|ref|XP_532382.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 2
            [Canis lupus familiaris]
 gi|301765482|ref|XP_002918158.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
            [Ailuropoda melanoleuca]
 gi|410957577|ref|XP_003985402.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 1
            [Felis catus]
 gi|426231739|ref|XP_004009895.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Ovis aries]
 gi|148744083|gb|AAI42268.1| POLR2B protein [Bos taurus]
 gi|296486557|tpg|DAA28670.1| TPA: DNA directed RNA polymerase II polypeptide B [Bos taurus]
          Length = 1174

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 324/1143 (28%), Positives = 511/1143 (44%), Gaps = 141/1143 (12%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   ++   ++   G+ P+ML++  C L G   
Sbjct: 109  MPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 168

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   + +D +  YT +     
Sbjct: 169  RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGECR--S 223

Query: 151  CVRKD-QSSVTLKLYYLLNGSV---------RLGFWLQGKEYLLPVGIVLKALVDTNDLE 200
            C+    + + T+ +  L  G           R+   L   +  +P+ IV +AL   +D +
Sbjct: 224  CLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRD 283

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +++           P + E VK  L E     +  +   L  IG   +    
Sbjct: 284  ILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAKP 328

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     A+ V++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 329  GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   ++ L++ +   Q  I + GK F+   LA IK       ++
Sbjct: 389  GNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFI-DRGKDFNL-ELA-IK-------TR 438

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   ++  L TG    Q     Q RAG +    RL F   +S  R ++      G +  
Sbjct: 439  IISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLA 496

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G   GL+ ++     ++                + IL  L
Sbjct: 497  KPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  +       + ++G  VG+    + E+++  LR+L+      VS  S
Sbjct: 546  EEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEVS 602

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
            +I D  E      +  G      L     K +   R+I    E   N            +
Sbjct: 603  MIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVV 662

Query: 599  ELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656
            E I   E+  V + +   D  +         TH EIHP+ +L V A++ P+ DHNQSPRN
Sbjct: 663  EYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRN 722

Query: 657  MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
             YQ  M KQ MG  +     R D   + L  PQ P+V T +       E P G N+IVA+
Sbjct: 723  TYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAI 782

Query: 717  LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA---- 772
             +YTGY+ ED++I+N+S+VDRG      Y++     S  G   D+ +   +  ++     
Sbjct: 783  ASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKG--FDQEEVFEKPTRETCQGM 840

Query: 773  -KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGSE 817
              +++  +D DGL   G  +   +       ++ +       TN R          + SE
Sbjct: 841  RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELEGTNRRYTKRDCSTFLRTSE 900

Query: 818  SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
            +  VD V V +       +   IR R  R P IGDKF+SRHGQKG C   +   DMPF+ 
Sbjct: 901  TGIVDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT- 957

Query: 878  VTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDE 937
              G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF ++V           
Sbjct: 958  CEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVN---------- 1007

Query: 938  SKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRS 997
                V ++  +L   G++  G EVLY+G  G ++T +IFIGP YYQRL+HMV DK   R+
Sbjct: 1008 ----VQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRA 1063

Query: 998  TGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCG 1057
             G +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +RL   SD +   VC+LCG
Sbjct: 1064 RGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCG 1123

Query: 1058 SVLTA-TFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAA 1116
             +  A T  H  +                   C  C+    +  V MPY  + L  EL +
Sbjct: 1124 IMAIANTRTHTYE-------------------CRGCRNKTQISLVRMPYACKLLFQELMS 1164

Query: 1117 MNI 1119
            M+I
Sbjct: 1165 MSI 1167


>gi|324120596|dbj|BAJ78689.1| RNA polymerase II second largest subunit [Lepidocampa weberi]
          Length = 1179

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 321/1144 (28%), Positives = 512/1144 (44%), Gaps = 142/1144 (12%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   +    ++   G+ P+ML++  C L G   
Sbjct: 113  MPNEARLRNLTYSAPLYVDITKSVIKEGEEAIETQHQKTFIGKIPIMLRSTYCLLNGLTD 172

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  Y  KA +  
Sbjct: 173  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKYAY--KAEIRS 227

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  L  G   +     G+  +         +P+ IV +AL    D +
Sbjct: 228  CLEHSSRPTSTLWVNMLARGGQSIKKSAIGQRIIAVVPYIKQEIPIMIVFRALGFVADRD 287

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAE---VQDLSLTTRLQCLQHIGEHFQP 257
            I  H+   +D+           P + E VK  L E   VQ+ ++      L  IG   + 
Sbjct: 288  ILEHIIYDFDD-----------PEMMEMVKPSLDEAFVVQEQNVA-----LNFIGA--RG 329

Query: 258  VIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNP 313
               G+  E     A  +++  +  H+  ++     K   L +M+ +L          D+ 
Sbjct: 330  ARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDR 389

Query: 314  DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKN 373
            D   N+ + L G L+    +   ++ L++ +   Q  I + GK F+   LA IK      
Sbjct: 390  DHYGNKRLDLAGPLLAFLFRGLFKNLLKEVRIYSQKFI-DRGKDFN-LELA-IK------ 440

Query: 374  PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
             ++ I   +   L TG    Q     Q RAG +    RL F   +S  R V+      G 
Sbjct: 441  -TRIITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG- 497

Query: 434  RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
            +    R+L    WG +CP  TP+G   GL+ ++     ++                + IL
Sbjct: 498  KLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPIL 546

Query: 494  RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VS 547
              L    M  +L ++  S       + ++G  VG+    + E++++ LR+L+      VS
Sbjct: 547  EFLEEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMSTLRKLRRQMDIIVS 603

Query: 548  AASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN---------- 597
              S+I D  +      +  G      L     +     R+I +  E   N          
Sbjct: 604  EVSMIRDIRDREIRIYTDAGRICRPLLIVEGGRLALKKRHIEMLKEREYNNYGWQDLVAS 663

Query: 598  --IELIGPF-EQVFMEIRCPDGGDGGRRNAFPA--THEEIHPTGMLSVVANLTPYSDHNQ 652
              +E I    E+  M    P+     +  A+    TH EIHP  +L V A++ P+ DHNQ
Sbjct: 664  GVVEYIDTLEEETVMIAMSPEDLRQDKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQ 723

Query: 653  SPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNA 712
            SPRN YQ  M KQ MG  +     R D   + L  PQ P+V T +       E P G N+
Sbjct: 724  SPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLFYPQKPLVTTRSMEYLRFRELPAGINS 783

Query: 713  IVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVDRGQKLFRRNKD 771
            +VA+  YTGY+ ED++I+N S+V+RG      Y++ +  +    G++ ++ +K  +    
Sbjct: 784  VVAIACYTGYNQEDSVIMNASAVERGFFRSVFYRSYKDQECKRSGDQEEQFEKPTKETCQ 843

Query: 772  A--KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSR---KG 815
                +++  +D DG+             +G+ I   E    +   T    + ++    + 
Sbjct: 844  GMRNAIYDKLDEDGIIAPGIRVSGDDVIIGKTITLPENDDELEGTTRRFTKRDASTFLRN 903

Query: 816  SESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPF 875
            SE+  VD V V + N++   +   IR R  R P IGDKF+SRHGQKG C   +   DM F
Sbjct: 904  SETGIVDQVMVTL-NAEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMIF 961

Query: 876  SGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGT 935
            +   G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF ++V         
Sbjct: 962  T-CEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDTVN-------- 1012

Query: 936  DESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQV 995
                  V ++  +L+  G+   G EV+Y+G  G ++  +IF+GP YYQRL+HMV DK   
Sbjct: 1013 ------VQKISNLLQEYGYQLRGNEVMYNGQSGRKINAQIFLGPTYYQRLKHMVDDKIHS 1066

Query: 996  RSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSL 1055
            R+ G +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +RL   SD +   VC+L
Sbjct: 1067 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNL 1126

Query: 1056 CGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELA 1115
            CG +  A   +                      C  C+    +  V +PY  + L  EL 
Sbjct: 1127 CGLIAIANLRN------------------NTFECKGCKNKTQISQVRLPYAAKLLFQELM 1168

Query: 1116 AMNI 1119
            AMNI
Sbjct: 1169 AMNI 1172


>gi|145521170|ref|XP_001446440.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124413918|emb|CAK79043.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1131

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 324/1138 (28%), Positives = 518/1138 (45%), Gaps = 152/1138 (13%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
             CR    +Y G +  +V   ++    P+  +    G+ P+ML +++C+L G    ++   
Sbjct: 85   ECRLNDQTYAGDIYVNVRI-HMKGREPIEEKDVLIGRMPIMLGSKKCNLSGKTEAEIFQY 143

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
             E   +  GYFI+ G E+V    IL  +    + +     ++ + Y       +   K +
Sbjct: 144  GECPYDPKGYFIIEGNEKV----ILILEQVVDNRIIVDVDNKTDQYVSTVQSYQLETKSK 199

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYL-LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
            +S+ LK         +  F+++   +   P+ IV KAL   ND EI              
Sbjct: 200  ASIILK---------KNKFYVKSSSFKDAPLFIVFKALGIVNDKEIIE------------ 238

Query: 216  EKGAVGS-PLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETV 274
                +G+ P + E++ +   +  D  + T+L  LQ+IG+       G QS +    A   
Sbjct: 239  ---LIGTEPSIVEKLLMSFQDSSDEKIKTQLDALQYIGKLITSKFGG-QSSNLADQAREK 294

Query: 275  IRDYIFVHLN----DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITI 330
            +      H+N    D   K   L  M+++L   ++     D+ D   N+ +   G+L+ +
Sbjct: 295  LAQVFLAHVNCKKYDFYPKAIYLGQMVRRLILAMEDKRFVDDKDYYGNKRMRCAGNLLEL 354

Query: 331  YLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGR 390
              ++  +        +++ E+   GK    F   ++   M K     I   +   +KTG+
Sbjct: 355  LFEDLFKGLNSTISSILKKEL---GKANCKFTPKDVTMKM-KEFGVDITKGLNRAIKTGK 410

Query: 391  LATQT-GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
               Q   +D   R G T    R+++   +     + R      L+ +  R L+   +G +
Sbjct: 411  WTIQRFHMD---RQGVTQLLARISYTSALGMLTKM-RSQVQKTLKVSGPRALVGSQFGMI 466

Query: 450  CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
            CP  TPDGE CGL+  +     +     ++ +I+D      S+ ++++ +G +  +    
Sbjct: 467  CPADTPDGEDCGLVKTLALLTHI-----TQEDIQD------SVYKIILSMG-VEDICHFK 514

Query: 510  KSGPPAVLSVLLDGRVVGV--IPSSEIEKVVAHLRRLKVSA-ASVIPDDLE--VGYVPLS 564
             S       V L+G +VG+   P   ++++    RR K++   S+  DDL   V     S
Sbjct: 515  PSEFHKNYIVYLNGIIVGMHARPQEFVDQLRILRRRGKINEFVSIHKDDLRKVVNISGDS 574

Query: 565  LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNI--ELIGPFEQVFMEIRCPDGGDGGRR 622
                 P + +    P+ ++ +  I     +++ +    +   +  ++++   D       
Sbjct: 575  GRLVRPLILVKDGKPQLIQ-IDMIDFKQNDAKTVFSSFVKNGKIEYLDVNESD------- 626

Query: 623  NAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQ 672
            NAF A          TH EI    +LS V  L P+  HNQS RN +QCQM KQ++G    
Sbjct: 627  NAFIALTINDVTMETTHLEIDQMTILSCVTGLVPFPHHNQSARNTFQCQMGKQSLGIIGM 686

Query: 673  ALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNK 732
              + R D +LY L  PQTP+VRT +         P G NA VAV++Y+ YD+EDA+I+NK
Sbjct: 687  NTQIRCDTQLYQLIYPQTPLVRTVSMEAVNQHRLPAGHNAQVAVMSYSCYDIEDALIMNK 746

Query: 733  SSVDRGMCHGQIYQTETIDLS-DDGNKVDRGQKLF---------RRNKDAKSLHSVIDSD 782
            SS+DRG     +Y+    +   +  NK  R  +            + K  K  H+ +D+D
Sbjct: 747  SSLDRGFGRTAVYKKSVTECEINQRNKESRFNERIDEPPTKTHNTKKKFIKKYHA-LDND 805

Query: 783  GLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR------KGSESVF-------VDYVAVDMK 829
            G+  VG  +H G+ Y    +K T     N +        + SVF       VD V +   
Sbjct: 806  GITKVGAQLHHGDIYV---NKKTPQVPDNPQTENIQIADTPSVFKEKWPYTVDRVLIINN 862

Query: 830  NSKNLPQKANIR--FRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLII 887
             +    +   I+  FR  R P  GDKFSSRHGQKGV   +    DMPF+   G  PDLI+
Sbjct: 863  TNDGTEKIKTIKTIFRQIRRPEFGDKFSSRHGQKGVVGLIVNQEDMPFNE-RGWCPDLIM 921

Query: 888  NPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGE 947
            NPH +PSRMTIA L+E +  K G+L GKF   T F        G+         V ++GE
Sbjct: 922  NPHGYPSRMTIAKLMELLCGKLGALEGKFKYGTAFG-------GEN--------VLQVGE 966

Query: 948  MLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQ 1007
             L   GF+Y G + L SG+ G  + C ++ GP++YQRL+HMV DK   R+ G M+++TRQ
Sbjct: 967  ELLKRGFHYQGKDCLISGITGEYMECYVYQGPIFYQRLKHMVIDKIHARAKGPMEKLTRQ 1026

Query: 1008 PIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHP 1067
            P++GR + GG R GEMERD  LA+GA+ LL +RL   SD     VC +CG   + +    
Sbjct: 1027 PVEGRAKDGGQRIGEMERDCFLAYGASNLLIERLLISSDPFNVYVCEICGMFKSDS---- 1082

Query: 1068 QKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
                                 C  C T K  + + +PY  + L  EL AMNIK  LQL
Sbjct: 1083 --------------------VCRGCNTDKVYQ-IRLPYCCKLLFQELLAMNIKPKLQL 1119


>gi|324120622|dbj|BAJ78702.1| RNA polymerase II second largest subunit [Karoophasma biedouwense]
          Length = 1176

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 320/1141 (28%), Positives = 512/1141 (44%), Gaps = 136/1141 (11%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   +    ++   G+ P+ML++  C L G   
Sbjct: 109  MPNEARLRNLTYSAPLYVDITKTIVKDGEEPIETQHQKTFIGKIPIMLRSTYCLLSGLTD 168

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  Y  KA +  
Sbjct: 169  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKFAY--KAEIRS 223

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  +  G   +     G+  +         +P+ IV +AL    D +
Sbjct: 224  CLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAVLPYIKQEIPIMIVFRALGFVADRD 283

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +D+           P + E VK  L E     +  +   L  IG   +    
Sbjct: 284  ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RGARP 328

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     A  +++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 329  GVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   ++ +++ +   Q  I + GK F+   LA IK       +K
Sbjct: 389  GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFI-DRGKDFN-LELA-IK-------TK 438

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   +   L TG    Q     Q RAG +    RL F   +S  R V+      G +  
Sbjct: 439  IITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 496

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G   GL+ ++     ++                + IL  L
Sbjct: 497  KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  S       + ++G  VG+    + E+++A LR+L+      VS  S
Sbjct: 546  EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVSEVS 602

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
            +I D  +      +  G      L       +   R+I +  E   N            +
Sbjct: 603  MIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKRHIDMLKEREYNNYGWQVLVASGVV 662

Query: 599  ELIGPF-EQVFMEIRCPDGGDGGRRNAFPA--THEEIHPTGMLSVVANLTPYSDHNQSPR 655
            E I    E+  M    P+     +  A+    TH EIHP  +L V A++ P+ DHNQSPR
Sbjct: 663  EYIDTLEEETVMIAMSPEDLRQEKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPR 722

Query: 656  NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
            N YQ  M KQ MG  +     R D   + L  P  P+V T +       E P G N+IVA
Sbjct: 723  NTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVA 782

Query: 716  VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVDRGQKLFRRNKDA-- 772
            +L YTGY+ ED++I+N S+V+RG      +++ +  +    G++ ++ +K  R+      
Sbjct: 783  ILCYTGYNQEDSVIMNASAVERGFFRSVFFRSYKDAESKRIGDQEEQFEKPTRQTCQGMR 842

Query: 773  KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSR---KGSES 818
             +L+  +D DG+             +G+ I   E    +   T    + ++    + SE+
Sbjct: 843  NALYDKLDDDGIISPGIRVSGDDVVIGKTITLPENDDELEGTTKRFTKRDASTFLRNSET 902

Query: 819  VFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGV 878
              VD V + + NS+   +   IR R  R P IGDKF+SRHGQKG C   +   DMPF+  
Sbjct: 903  GIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT-C 959

Query: 879  TGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDES 938
             G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF ++V            
Sbjct: 960  EGLTPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVN----------- 1008

Query: 939  KSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRST 998
               V ++  +L+  G++  G EV+Y+G  G +++ +IF+GP YYQRL+HMV DK   R+ 
Sbjct: 1009 ---VQKISTLLQEYGYHLRGNEVMYNGHTGRKISAQIFLGPTYYQRLKHMVDDKIHSRAR 1065

Query: 999  GTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGS 1058
            G +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +RL   SD +   VC+ CG 
Sbjct: 1066 GPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGL 1125

Query: 1059 VLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMN 1118
            +  A   +                      C  C+    +  V +PY  + L  EL +MN
Sbjct: 1126 IAIANLRN------------------NTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 1167

Query: 1119 I 1119
            I
Sbjct: 1168 I 1168


>gi|440903358|gb|ELR54029.1| DNA-directed RNA polymerase II subunit RPB2 [Bos grunniens mutus]
          Length = 1175

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 324/1143 (28%), Positives = 511/1143 (44%), Gaps = 141/1143 (12%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   ++   ++   G+ P+ML++  C L G   
Sbjct: 110  MPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 169

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   + +D +  YT +     
Sbjct: 170  RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGECR--S 224

Query: 151  CVRKD-QSSVTLKLYYLLNGSV---------RLGFWLQGKEYLLPVGIVLKALVDTNDLE 200
            C+    + + T+ +  L  G           R+   L   +  +P+ IV +AL   +D +
Sbjct: 225  CLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRD 284

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +++           P + E VK  L E     +  +   L  IG   +    
Sbjct: 285  ILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAKP 329

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     A+ V++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 330  GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 389

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   ++ L++ +   Q  I + GK F+   LA IK       ++
Sbjct: 390  GNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFI-DRGKDFNL-ELA-IK-------TR 439

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   ++  L TG    Q     Q RAG +    RL F   +S  R ++      G +  
Sbjct: 440  IISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLA 497

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G   GL+ ++     ++                + IL  L
Sbjct: 498  KPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEFL 546

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  +       + ++G  VG+    + E+++  LR+L+      VS  S
Sbjct: 547  EEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEVS 603

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
            +I D  E      +  G      L     K +   R+I    E   N            +
Sbjct: 604  MIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVV 663

Query: 599  ELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656
            E I   E+  V + +   D  +         TH EIHP+ +L V A++ P+ DHNQSPRN
Sbjct: 664  EYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRN 723

Query: 657  MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
             YQ  M KQ MG  +     R D   + L  PQ P+V T +       E P G N+IVA+
Sbjct: 724  TYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAI 783

Query: 717  LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA---- 772
             +YTGY+ ED++I+N+S+VDRG      Y++     S  G   D+ +   +  ++     
Sbjct: 784  ASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKG--FDQEEVFEKPTRETCQGM 841

Query: 773  -KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGSE 817
              +++  +D DGL   G  +   +       ++ +       TN R          + SE
Sbjct: 842  RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELEGTNRRYTKRDCSTFLRTSE 901

Query: 818  SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
            +  VD V V +       +   IR R  R P IGDKF+SRHGQKG C   +   DMPF+ 
Sbjct: 902  TGIVDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT- 958

Query: 878  VTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDE 937
              G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF ++V           
Sbjct: 959  CEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVN---------- 1008

Query: 938  SKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRS 997
                V ++  +L   G++  G EVLY+G  G ++T +IFIGP YYQRL+HMV DK   R+
Sbjct: 1009 ----VQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRA 1064

Query: 998  TGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCG 1057
             G +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +RL   SD +   VC+LCG
Sbjct: 1065 RGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCG 1124

Query: 1058 SVLTA-TFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAA 1116
             +  A T  H  +                   C  C+    +  V MPY  + L  EL +
Sbjct: 1125 IMAIANTRTHTYE-------------------CRGCRNKTQISLVRMPYACKLLFQELMS 1165

Query: 1117 MNI 1119
            M+I
Sbjct: 1166 MSI 1168


>gi|324120662|dbj|BAJ78722.1| RNA polymerase II second largest subunit [Protohermes grandis]
          Length = 1175

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 322/1141 (28%), Positives = 511/1141 (44%), Gaps = 136/1141 (11%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   +    ++   G+ P+ML++  C L G   
Sbjct: 109  MPNEARLRNLTYSAPLYVDITKTIVKEGEDPIETQHQKTFIGKIPIMLRSTYCLLSGLTD 168

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   + +D +  Y  KA +  
Sbjct: 169  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAMKDGKYAY--KAEIRS 223

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  +  G   +     G+  +         +P+ IV +AL    D +
Sbjct: 224  CLEHSSRPTSTLWVNMMARGGQAIKKAAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 283

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +D+           P + E VK  L E     +  +   L  IG   +    
Sbjct: 284  ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RGARP 328

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     A  +++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 329  GVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   ++ L K  +L   +  + GK F+  +LA IK       +K
Sbjct: 389  GNKRLDLAGPLLAFLFRGLFKN-LMKEVRLYAQKFIDRGKDFNL-DLA-IK-------TK 438

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   +   L TG    Q     Q RAG +    RL F   +S  R ++      G +  
Sbjct: 439  MITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRINSPIGRDG-KLA 496

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G   GL+ ++     ++                + IL  L
Sbjct: 497  KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  S       + ++G  VG+    + E+++A LR+L+      VS  S
Sbjct: 546  EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVSEVS 602

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
            +I D  +      +  G      L     K +   R+I +  E   N            +
Sbjct: 603  MIRDIRDREIRIYTDSGRICRPLLIVENGKLLLKKRHIDMLKEREYNNYGWQVLVASGVV 662

Query: 599  ELIGPFEQ-VFMEIRCPDGGDGGRRNAFPATHE--EIHPTGMLSVVANLTPYSDHNQSPR 655
            E I   E+   M    P+     +  A+  TH   EIH   +L V A++ P+ DHNQSPR
Sbjct: 663  EYIDTLEEETVMIAMSPEDLRHEKEYAYCTTHTHCEIHAAMILGVCASIIPFPDHNQSPR 722

Query: 656  NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
            N YQ  M KQ MG  +     R D   + L  P  P+V T +       E P G N+IVA
Sbjct: 723  NTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVA 782

Query: 716  VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD-GNKVDRGQKLFRRN-KDAK 773
            +L YTGY+ ED++ILN S+V+RG      Y++     S   G++ ++ +K  R+  +  +
Sbjct: 783  ILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKRIGDQEEQFEKPTRQTCQGMR 842

Query: 774  SLH-SVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSR---KGSES 818
            + H   +D DG+             +G+ I   E    +   T    + ++    + SE+
Sbjct: 843  NAHYDKLDDDGIISPGIRVSGDDVVIGKTITLPENEDELEGTTKRFTKRDASTFLRNSET 902

Query: 819  VFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGV 878
              VD V + + NS+   +   IR R  R P IGDKF+SRHGQKG C   +   DMPF+  
Sbjct: 903  GVVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT-C 959

Query: 879  TGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDES 938
             G+ PD+IINPHA PSRMTI  L+E +  K  S  G+  DATPF ++V            
Sbjct: 960  EGLTPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVN----------- 1008

Query: 939  KSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRST 998
               V ++  +L+  G++  G EV+Y+G  G ++  +IF+GP YYQRL+HMV DK   R+ 
Sbjct: 1009 ---VQKISTLLQEYGYHLRGNEVMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHSRAR 1065

Query: 999  GTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGS 1058
            G +  + RQP++GR R GG+RFGEMERD  ++HGAA  L +RL   SD +   VC+ CG 
Sbjct: 1066 GPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGL 1125

Query: 1059 VLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMN 1118
            +  A   +                      C  C+    +  V +PY  + L  EL +MN
Sbjct: 1126 IAIANLRN------------------NTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 1167

Query: 1119 I 1119
            I
Sbjct: 1168 I 1168


>gi|291401757|ref|XP_002717206.1| PREDICTED: DNA directed RNA polymerase II polypeptide B [Oryctolagus
            cuniculus]
          Length = 1174

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 323/1143 (28%), Positives = 511/1143 (44%), Gaps = 141/1143 (12%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   ++   ++   G+ P+ML++  C L G   
Sbjct: 109  MPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 168

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   + +D +  YT +     
Sbjct: 169  RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGECR--S 223

Query: 151  CVRKD-QSSVTLKLYYLLNGSV---------RLGFWLQGKEYLLPVGIVLKALVDTNDLE 200
            C+    + + T+ +  L  G           R+   L   +  +P+ IV +AL   +D +
Sbjct: 224  CLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRD 283

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +++           P + E VK  L E     +  +   L  IG   +    
Sbjct: 284  ILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAKP 328

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     A+ V++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 329  GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   ++ L++ +   Q  I + GK F+   LA IK       ++
Sbjct: 389  GNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFI-DRGKDFNL-ELA-IK-------TR 438

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   ++  L TG    Q     Q RAG +    RL F   +S  R ++      G +  
Sbjct: 439  IISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLA 496

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G   GL+ ++     ++                + IL  L
Sbjct: 497  KPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  +       + ++G  VG+    + E+++  LR+L+      VS  S
Sbjct: 546  EEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEVS 602

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
            +I D  E      +  G      L     K +   R+I    E   N            +
Sbjct: 603  MIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVV 662

Query: 599  ELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656
            E I   E+  V + +   D  +         TH EIHP+ +L V A++ P+ DHNQSPRN
Sbjct: 663  EYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRN 722

Query: 657  MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
             YQ  M KQ MG  +     R D   + L  PQ P+V T +       E P G N+IVA+
Sbjct: 723  TYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAI 782

Query: 717  LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA---- 772
             +YTGY+ ED++I+N+S+VDRG      Y++     S  G   D+ +   +  ++     
Sbjct: 783  ASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKG--FDQEEVFEKPTRETCQGM 840

Query: 773  -KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGSE 817
              +++  +D DGL   G  +   +       ++ +       TN R          + SE
Sbjct: 841  RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSE 900

Query: 818  SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
            +  VD V V +       +   IR R  R P IGDKF+SRHGQKG C   +   DMPF+ 
Sbjct: 901  TGIVDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT- 957

Query: 878  VTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDE 937
              G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF ++V           
Sbjct: 958  CEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVN---------- 1007

Query: 938  SKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRS 997
                V ++  +L   G++  G EVLY+G  G ++T +IF+GP YYQRL+HMV DK   R+
Sbjct: 1008 ----VQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFLGPTYYQRLKHMVDDKIHSRA 1063

Query: 998  TGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCG 1057
             G +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +RL   SD +   VC+LCG
Sbjct: 1064 RGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCG 1123

Query: 1058 SVLTA-TFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAA 1116
             +  A T  H  +                   C  C+    +  V MPY  + L  EL +
Sbjct: 1124 IMAIANTRTHTYE-------------------CRGCRNKTQISLVRMPYACKLLFQELMS 1164

Query: 1117 MNI 1119
            M+I
Sbjct: 1165 MSI 1167


>gi|324120636|dbj|BAJ78709.1| RNA polymerase II second largest subunit [Zorotypus sp. 154-1]
          Length = 1173

 Score =  378 bits (970), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 320/1141 (28%), Positives = 509/1141 (44%), Gaps = 136/1141 (11%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN---FGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   +  +      G+ P+ML++  C L G   
Sbjct: 107  MPNEARLRNLTYSAPLYVDITKTIVRDGEDPIEAQHQKTFIGKIPIMLRSTYCLLNGLTD 166

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  Y  K+ +  
Sbjct: 167  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKYAY--KSEIRS 221

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  +  G   +     G+  +         +P+ IV +AL    D +
Sbjct: 222  CLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 281

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +D+           P + E VK  L E     +  +   L  IG   +    
Sbjct: 282  ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGARP 326

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     A+ +++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 327  GVTREKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 386

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   ++ L K  +L   +  + GK F+   LA IK       +K
Sbjct: 387  GNKRLDLAGPLLAFLFRGLFKN-LMKEVRLYAQKFIDRGKDFN-LELA-IK-------TK 436

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   +   L TG    Q     Q RAG +    RL F   +S  R V+      G +  
Sbjct: 437  IITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 494

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G   GL+ ++     ++                + IL  L
Sbjct: 495  KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 543

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  S       + ++G  VG+    + E+++A LR+L+      VS  S
Sbjct: 544  EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRREMDIIVSEVS 600

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
            +I D  +      +  G      L       +   R+I +  +   N            +
Sbjct: 601  MIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKRHIDMLKDREYNNYGWQVLVSSGLV 660

Query: 599  ELIGPF-EQVFMEIRCPDGGDGGRRNAFPA--THEEIHPTGMLSVVANLTPYSDHNQSPR 655
            E I    E+  M    PD     +  A+    TH EIHP  +L V A++ P+ DHNQSPR
Sbjct: 661  EYIDTLEEETVMIAMSPDDLRQDKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPR 720

Query: 656  NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
            N YQ  M KQ MG  +     R D   + L  P  P+V T +       E P G N+IVA
Sbjct: 721  NTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVA 780

Query: 716  VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVDRGQKLFRRNKDA-- 772
            +L YTGY+ ED++ILN S+V+RG      +++ +  +    G++ ++ +K  R+      
Sbjct: 781  ILCYTGYNQEDSVILNASAVERGFFRSVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMR 840

Query: 773  KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSR---KGSES 818
             +L+  +D DG+             +G+ +   E    +   T    + ++    + SE+
Sbjct: 841  NALYDKLDDDGIISPGIRVSGDDVVIGKTMTLHETDDELEGTTKRFTKRDASTFLRNSET 900

Query: 819  VFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGV 878
              VD V + + NS+   +   IR R  R P IGDKF+SRHGQKG C   +   DMPF+  
Sbjct: 901  GIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT-C 957

Query: 879  TGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDES 938
             G+ PD+IINPHA PSRMTI  L+E +  K  S  G+  DATPF ++V            
Sbjct: 958  EGLTPDIIINPHAIPSRMTIGHLIECLQGKVSSNKGEIGDATPFNDAVN----------- 1006

Query: 939  KSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRST 998
               V ++  +L+  G+   G EV+Y+G  G ++  +IF+GP YYQRL+HMV DK   R+ 
Sbjct: 1007 ---VQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHSRAR 1063

Query: 999  GTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGS 1058
            G +  + RQP++GR R GG+RFGEMERD  ++HGAA  L +RL   SD +   VC+ CG 
Sbjct: 1064 GPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGL 1123

Query: 1059 VLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMN 1118
            +  A   +                      C  C+    +  + +PY  + L  EL AMN
Sbjct: 1124 IAIANLRN------------------NTFECKGCKNKTQISQIRLPYAAKLLFQELMAMN 1165

Query: 1119 I 1119
            I
Sbjct: 1166 I 1166


>gi|332157775|ref|YP_004423054.1| DNA-directed RNA polymerase subunit B [Pyrococcus sp. NA2]
 gi|331033238|gb|AEC51050.1| DNA-directed RNA polymerase subunit B [Pyrococcus sp. NA2]
          Length = 1117

 Score =  378 bits (970), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 336/1215 (27%), Positives = 531/1215 (43%), Gaps = 232/1215 (19%)

Query: 15   LVRHHIESFDYMLDEGLSEMFDHCRQAK-------ISYTGKLMADVEFQ----------- 56
            LVR H++S++  ++ GL E+ D     K       + +    + + EFQ           
Sbjct: 27   LVRQHLDSYNAFIERGLQEVVDEVGGIKPDIPDFEVKFGKIRVGEPEFQEPHGQRKPLYP 86

Query: 57   --------------YLDAGSPVVRE------RFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
                          YL+   PV+R           G+ P+MLK++ C L G   ++L+ L
Sbjct: 87   MDARIRNLTYSAPLYLEM-IPVIRGVEQDPVEVRIGELPIMLKSKVCRLYGLSDEELIKL 145

Query: 97   KEEAAEMGGYFILNGLERVFRSV--ILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRK 154
             E+  + GGYFI+NG ERV  S+  I P +    ++V     +R+E Y  K    R   +
Sbjct: 146  GEDPKDPGGYFIINGSERVIVSIEDIAPNR----TLVEKD--ERQERYIAKVFSYRHGYR 199

Query: 155  DQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGI-----------VLKALVDTNDLEIFN 203
               +V  K                 K+ +L VGI           V++AL    D +I +
Sbjct: 200  ALVTVERK-----------------KDGILYVGIPNVPRPVKFVYVMRALGLERDKDIVD 242

Query: 204  HLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLS-LTTRLQCLQHIGEHFQPVIDGL 262
                           AVG+    E  +I+   ++D S +TT+ + L++IG+   P   G 
Sbjct: 243  ---------------AVGND--PEVQQILFDNLEDASDITTQQEALEYIGKLVAP---GQ 282

Query: 263  QSESYYAVAETVIRDYIFVHLNDNND----KFNLLIFMLQKLFSLVDHTSVSDNPDSLQN 318
              E     AE VI + +  H+  N +    K   L  M  K+  L       D+ D   N
Sbjct: 283  AREYRLKRAEYVIDNNLLPHMGVNPEDRIRKAYYLGMMALKVIELSLGKRGEDDKDHYAN 342

Query: 319  QEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQI 378
            + + L G L+    +      ++  +  +    +  G+K+ F N+              I
Sbjct: 343  KRLRLAGDLLKDLFRVAFNQLVKDIQYQMTKTYQRRGEKYVFGNIHRF-----------I 391

Query: 379  GTSIETMLKTGRL--ATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
              SI   + T R+  A  TG     R G +   +R N++  +S  R V            
Sbjct: 392  RNSIRPDVLTERIEHALATGAWPGGRTGVSQLLDRTNYVSTMSHLRRVTSPLDREQPHFE 451

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
            + R L    WG +CP  TP+G  CGL+ ++    ++ +       +R++          L
Sbjct: 452  A-RDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEE-EVREY----------L 499

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSE--IEKVVAHLRRLKVSAASVIP- 553
            + +G++P     V+   P +  V L+G ++G +   +  +EK+ +  R  K+S    +  
Sbjct: 500  MSLGIVPI---EVRRPSPELWRVYLNGVLIGTVEDGKALVEKIRSDRRSGKISDIINVAY 556

Query: 554  -DDLEVGYVPLSLGGA-YPGLYLFTSPPKFVRP-VRNISLPSEESQNIELIGPFEQVFME 610
             +D++  YV    G    P + +    PK  +  V+ I     +  ++  +G  E +  E
Sbjct: 557  YEDVKEVYVNSDDGRVRRPLIIVENGKPKLTKEHVQAIKEGRLKWSDLIKMGVIEYLDAE 616

Query: 611  IRCPDGGDGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQC 660
                        NA+ A          TH E+ P  +L + A+L PY +HN +PRN Y  
Sbjct: 617  ---------EEENAYVAMWPWEVTKEHTHLELMPAAILGLPASLIPYPEHNAAPRNTYGA 667

Query: 661  QMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYT 720
             MAKQ++G      + R D + + L  PQ P+V +      G ++ P G N +VAVLAY 
Sbjct: 668  GMAKQSLGIGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYQ 727

Query: 721  GYDMEDAMILNKSSVDRGMCHGQIY-------------QTETIDLSDDGNKVDRGQKLFR 767
            GY+MEDA+I+NK+S++RG+     +             QT+  ++     +  RG+K +R
Sbjct: 728  GYNMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIPSPTVRGYRGEKYYR 787

Query: 768  RNKDAKSLHSVIDSDGLPY-----------VGQMIHP------GEPYCSIYDKTTNSWRT 810
                       +D DGL +           +G+   P      G    S+ ++   S   
Sbjct: 788  H----------LDEDGLIFPESKVEGKDVLIGRTSPPRFLEERGLGAVSLQERRETS--- 834

Query: 811  NSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPD 870
             + + SE   VD V +    + +  +   +  R  R P IGDKF+SRHGQKGV   + P 
Sbjct: 835  VAVRPSEKGIVDKVII--TETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQ 892

Query: 871  IDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTN 930
             DMP++  +G+ PDLI+NPH  PSRMT+  LLE++  K  +L G+ +D T F    ++  
Sbjct: 893  EDMPWTE-SGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPEEKL 951

Query: 931  GDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVS 990
                                  GF + G E++Y G+ G     +IFIG +YYQRL HMV+
Sbjct: 952  RKELE---------------ELGFKHTGREIMYDGITGKRFEADIFIGVIYYQRLHHMVA 996

Query: 991  DKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVA 1050
            DK   RS G +  +T+QP +GR R GG+RFGEMERD L+ HGAA LL +RL   SD    
Sbjct: 997  DKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEV 1056

Query: 1051 DVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYL 1110
             VC  CG +     +  ++R               KV C  C   + +  V M Y F+ L
Sbjct: 1057 WVCENCGHIA----LEDKRR--------------HKVYCPVCGEEERISKVEMSYAFKLL 1098

Query: 1111 AAELAAMNIKITLQL 1125
              EL AM I+  L L
Sbjct: 1099 LDELKAMCIRPKLNL 1113


>gi|159041032|ref|YP_001540284.1| DNA-directed RNA polymerase subunit B [Caldivirga maquilingensis
            IC-167]
 gi|157919867|gb|ABW01294.1| RNA polymerase Rpb2 domain 6 [Caldivirga maquilingensis IC-167]
          Length = 1131

 Score =  378 bits (970), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 333/1198 (27%), Positives = 550/1198 (45%), Gaps = 199/1198 (16%)

Query: 15   LVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDA--GSPVVRE----- 67
            LVRH I+SF+  +D  L E+    ++  I      + DV+ +++D   G P  +E     
Sbjct: 45   LVRHQIDSFNDFVDRKLKEI---VQEFNID-----LGDVKVKFIDVEVGKPRFKEPTGVE 96

Query: 68   ----------------------------------RFNFGQFPVMLKTRRCHLQGADSQKL 93
                                                  G  P+M+K++ C+L G   Q +
Sbjct: 97   NVIYPMEARLRNITYAAPMRLKVMLYINGEEYTETVPLGDLPIMVKSKYCNLYGLKPQAI 156

Query: 94   VSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVR 153
            V   E+  + GGYFI+NG ERV    ++ +++  ++     + +R      +A +I    
Sbjct: 157  VKKLEDPNDPGGYFIINGSERV----VVSQEDLALNKPIYDYDERGATRIPRAKIISMGP 212

Query: 154  KDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKY 213
              +++V ++  Y  +G + +   +      +P  +V++AL    D +I   L    +++ 
Sbjct: 213  GYRTTVVVE--YHKDGVIYVQ--IPKIPTRMPFPVVMRALGLEKDQDI--ALAVSDNDEI 266

Query: 214  KKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAET 273
            ++E       L S  + I +A   D       +   +IG     ++ G   E     A  
Sbjct: 267  QREL------LASFEMAIQIAPTVD-------EARDYIGRR---IVLGHPREIRIQRALE 310

Query: 274  VIRDYIFVHLN---DNNDKFNLLIFMLQKLFSLVD---HTSVSDNPDSLQNQEILLPGHL 327
             +  Y   HL    D+  + +  I + Q +  +++        D+ D + N+ + L G L
Sbjct: 311  YLDKYFLPHLGTTPDDKVRLSKAIELGQAVAGVIELYKGWRQPDDKDHMSNKRVRLVGDL 370

Query: 328  ITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLK 387
            +    +           + +QD      K++    +  ++ ++  +        I   LK
Sbjct: 371  LAQLFRSIF-------AQFVQDLRNQLEKQYSRGKIPELRTIVRAD-------IISDRLK 416

Query: 388  TGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT---SVRKLLPE 444
                A  TG  +  + G T   +R N++  IS  R V    S    RT      R L P 
Sbjct: 417  H---ALSTGNWVGGKTGVTQMLDRTNYVSTISHLRRVVSSLS----RTQPHFEARDLHPT 469

Query: 445  SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
             WG LC + TP+G+ CGL+ +M     V    D             ++LR +  + ++ +
Sbjct: 470  QWGRLCAIETPEGQNCGLVKNMALMATVTVGVDEASV--------EAMLREMGVINVLDA 521

Query: 505  LPKLVKSGPPAVLSVLLDGRVVGV--IPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVP 562
                +K       +VLL+GR++G+   P + +  +    RR  ++       ++ VGY+ 
Sbjct: 522  RRNEIKGA-----NVLLNGRLIGIHRDPQALVNAIREARRRGDING------EVNVGYIE 570

Query: 563  L-------SLGGAYPGLYLFTSPPKFVRPVRNIS-LPSEESQNIELIGPFEQVFMEIRCP 614
                      GG      L  S  K      +I  L S E    +L+      +++    
Sbjct: 571  KLNEVRVNCDGGRLRRPLLIISNGKLRLTKEHIEKLRSGEWTWDDLVKNGIVEYLDADEE 630

Query: 615  DG-----GDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGF 669
            +      GD    +    TH EI P+ ML  VA++ PYS+HNQSPRN+Y+  MAKQ++GF
Sbjct: 631  ENAMVTIGDTKDVDLSKYTHMEIIPSIMLGAVAHIIPYSEHNQSPRNIYEAAMAKQSLGF 690

Query: 670  SVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMI 729
                 ++R D + + L  P+ P+V T      G    P+G NA++A++++ GY +EDA++
Sbjct: 691  PYSNYRYRIDSRGHLLLYPERPLVTTRGLELIGYSMRPSGQNAVLALVSFMGYSIEDAVM 750

Query: 730  LNKSSVDRGMCHG---QIYQTETIDLS-DDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLP 785
            +NK++++RGM      + Y+TE +     + +++       R  + A++ ++ +D DG+ 
Sbjct: 751  INKAAIERGMFRSIFYRSYETEAMRYPMGENDRITIPPPTVRDYRGAEA-YAHLDEDGIV 809

Query: 786  -----------YVGQMIHPGEPYCSIYD-KTTNSWRTNS---RKGSESVFVDYVAVDMKN 830
                        +G+ I P   Y ++ + +    W+ NS   R+G + + VD V +    
Sbjct: 810  PPEVFVSSKEVLIGK-ISPPRFYSALAESQLAGEWKDNSITVRRGEKGI-VDQVLI--TE 865

Query: 831  SKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPH 890
            S    +   ++ R  R P +GDKF+SRHGQKGV   + P  DMPF+   G+ PD++INPH
Sbjct: 866  SSEGFKLIKVKVRELRIPELGDKFASRHGQKGVVGMIVPMEDMPFTE-NGITPDVVINPH 924

Query: 891  AFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLR 950
            A PSRMTI  LLE++A K  +L+G  +DATPF    + T               +  ML 
Sbjct: 925  ALPSRMTIGQLLEAIAGKTAALYGTLVDATPFEGVPEGT---------------IRSMLM 969

Query: 951  TCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIK 1010
              G+ + G E +YSG+ GT L  +IFIG VYYQ+L HMV+DK   R+TG M  +TRQP +
Sbjct: 970  KAGYRWSGRETMYSGLMGTRLDADIFIGVVYYQKLHHMVADKIHARATGPMQILTRQPTE 1029

Query: 1011 GRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKR 1070
            GR R GG+R GEMERD L+AHGAA LLH+R+   SD +V  VC  CG  + A +   +KR
Sbjct: 1030 GRSREGGLRLGEMERDVLIAHGAAALLHERMVESSDKYVMYVCEDCG--MMAWWDDFKKR 1087

Query: 1071 AIREIGGLPPARAPKKVTCHACQTSKG-METVAMPYVFRYLAAELAAMNIKITLQLGD 1127
             I  I G                  KG +  V +PY F+ L  EL ++ I   L+L +
Sbjct: 1088 PICPIHG-----------------DKGRIAKVIVPYAFKLLLQELISLGIYPKLKLSE 1128


>gi|352682853|ref|YP_004893377.1| DNA-directed RNA polymerase subunit B [Thermoproteus tenax Kra 1]
 gi|350275652|emb|CCC82299.1| DNA-directed RNA polymerase subunit B [Thermoproteus tenax Kra 1]
          Length = 1127

 Score =  377 bits (969), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 331/1124 (29%), Positives = 519/1124 (46%), Gaps = 169/1124 (15%)

Query: 57   YLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVF 116
            Y+D   P   E    G+ P+++K++RC+L     ++     E+  + GGYFI+NG ER  
Sbjct: 117  YVD-DEPYATETIYAGELPIVVKSKRCNLTRLKPEEYAKKFEDPEDPGGYFIINGSER-- 173

Query: 117  RSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS-----VTLKLYYLLNGSV 171
              V++ +++           DR          +R + K  S+      T+ + Y  +G +
Sbjct: 174  --VVISQEDL--------VTDRPIYDVGDKPTVRYLAKVISTGPGYRATMTVEYHKDGVI 223

Query: 172  RLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE---KGAVGSPLVSER 228
             +   L      +P  + ++A+   +D +I   L    D   +KE       G  + + R
Sbjct: 224  YV--TLSAIPVRIPFTVYMRAMGLESDQDIV--LAVSDDPDIQKELLPSLLAGQEIATTR 279

Query: 229  --------VKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIF 280
                     KI + + + + +   LQ L    ++F P ++  Q     A+ E  I+    
Sbjct: 280  DDALDFIGGKIAVGQPRPIRIERALQILD---KYFLPNLNP-QKPDDKAMQEARIK---- 331

Query: 281  VHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWL 340
                    K  LL  + + L  +       D+ D + N+ + L   L+    +  ++ +L
Sbjct: 332  --------KALLLGQVAKGLIEMQLGRRRPDDKDHVANKRVRLVNDLLAQLFRTVMKQFL 383

Query: 341  RKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQ 400
            +        E++N  +K+             K P  Q     + + +  + A  TG  + 
Sbjct: 384  Q--------ELKNQLEKY---------YARGKIPHLQTIVRPDIITERVKQALATGNWVG 426

Query: 401  QRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT---SVRKLLPESWGFLCPVHTPDG 457
             + G +   +R N+L  +S+ R V    S    RT      R L P  WG LC V TP+G
Sbjct: 427  GKTGVSQILDRTNYLSTLSYLRRVVSSLS----RTQPHFEARDLHPTQWGRLCAVETPEG 482

Query: 458  EPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVL 517
            +  GL+ ++     V    D            +S+  +L  +G++P L    +    A  
Sbjct: 483  QNVGLVKNLALLAEVTMGVDE-----------SSVEGLLYNLGVVPVLE--ARRNGVAGA 529

Query: 518  SVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL-----GGAY--P 570
             V L+GR++GV P  E E++V ++R ++      + D++ V  +  S+     GG    P
Sbjct: 530  EVYLNGRLIGVHP--EPEELVKNIRTMRRQGK--VHDEVNVALLGNSIYVNCDGGRIRRP 585

Query: 571  GLYLFTSPPKFVRPVRNISLPSEESQN-------IELIGPFEQVFMEIRC-PDGGDGGRR 622
             L +     K  R      +  E + N       IE +   E+    I   P     G  
Sbjct: 586  LLVVENGKLKLTREHVQKLVAGELTWNDLIKMGVIEYLDADEEENAHIAVDPQEDLAG-- 643

Query: 623  NAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKL 682
                 TH EI P+ +L  +A++ PY +HNQSPRN Y+  MAKQ++G     + ++ D + 
Sbjct: 644  ----YTHMEIIPSSILGAIASIIPYLEHNQSPRNQYEAAMAKQSLGLPQANIMYKLDSRG 699

Query: 683  YHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG 742
            + L  P+ PIV T      G    P G NA+VA+L YTGY++EDA+I+NKSSV+RG    
Sbjct: 700  HMLYYPERPIVTTRGLELIGYSRKPAGQNAVVALLTYTGYNIEDAIIMNKSSVERGFMRS 759

Query: 743  QIYQT-ETIDLSDDGNKVDRGQ--KLFRRNKDAKSLHSVIDSDGLP----YV--GQMI-- 791
              Y+T ET +    G + DR +      R       +  +D DG+     YV  G++I  
Sbjct: 760  NFYRTYETEEQKYPGGEEDRIEVPDPSARGYRGPEAYGHLDEDGIAPPEVYVSGGEVIIG 819

Query: 792  --HPGEPYCSIYDKTTNSWRTNS----RKGSESVFVDYVAVDMKNSKNLPQKANIRFRHT 845
               P   Y ++  +     R ++    R+G + + VD V +      N  +   +R R  
Sbjct: 820  KTAPPRFYMTLETEKILKERRDASIPVRRGEKGI-VDRVVITESPEGN--KLVKVRLREL 876

Query: 846  RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
            R P +GDKF+SRHGQKGV   L    DMPF+   G+ PD+I+NPHA PSRMT+  LLES+
Sbjct: 877  RVPELGDKFASRHGQKGVIGMLLRQEDMPFTE-DGIVPDIIVNPHAMPSRMTVGQLLESI 935

Query: 906  AAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSG 965
            A K G++ G+ +DATPF           G  ES     EL E+L   G+ + G EV+YSG
Sbjct: 936  AGKAGAMVGRLIDATPF----------EGVPES-----ELRELLMKLGYRWDGKEVMYSG 980

Query: 966  VYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMER 1025
            + G +L  +IFIG VYYQ+L HMV+DK   RS G +  +TRQP +GR R GG+R GEMER
Sbjct: 981  ITGEKLVADIFIGIVYYQKLHHMVADKIHARSRGPVQILTRQPTEGRSREGGLRLGEMER 1040

Query: 1026 DSLLAHGAAYLLHDRLHTCSDYHVADVCSLCG--SVLTATFIHPQKRAIREIGGLPPARA 1083
            D L+AHGA+ LL++R+   SD +V  VC LCG  + L A    P+               
Sbjct: 1041 DVLIAHGASALLYERMVESSDKYVMYVCELCGLPAYLDAKTNRPK--------------- 1085

Query: 1084 PKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
                 C     +     V +PY F+ L  EL ++ I   L+L +
Sbjct: 1086 -----CPIHGETGQFAKVVVPYAFKLLLQELISLGIYPKLELAE 1124


>gi|355687402|gb|EHH25986.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca mulatta]
          Length = 1174

 Score =  377 bits (969), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 324/1143 (28%), Positives = 511/1143 (44%), Gaps = 141/1143 (12%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   ++   ++   G+ P+ML++  C L G   
Sbjct: 109  MPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 168

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   + +D +  YT +     
Sbjct: 169  RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGECR--S 223

Query: 151  CVRKD-QSSVTLKLYYLLNGSV---------RLGFWLQGKEYLLPVGIVLKALVDTNDLE 200
            C+    + + T+ +  L  G           R+   L   +  +P+ IV +AL   +D +
Sbjct: 224  CLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRD 283

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +++           P + E VK  L E     +  +   L  IG   +    
Sbjct: 284  ILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAKP 328

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     A+ V++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 329  GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   ++ L++ +   Q  I + GK F+   LA IK       ++
Sbjct: 389  GNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFI-DRGKDFNL-ELA-IK-------TR 438

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   ++  L TG    Q     Q RAG +    RL F   +S  R ++      G +  
Sbjct: 439  IISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLA 496

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G   GL+ ++     ++                + IL  L
Sbjct: 497  KPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  +       + ++G  VG+    + E+++  LR+L+      VS  S
Sbjct: 546  EEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEVS 602

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEE------------SQNI 598
            +I D  E      +  G      L     K +   R+I    E             S  +
Sbjct: 603  MIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYKTTGWQDLVASGVV 662

Query: 599  ELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656
            E I   E+  V + +   D  +         TH EIHP+ +L V A++ P+ DHNQSPRN
Sbjct: 663  EYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRN 722

Query: 657  MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
             YQ  M KQ MG  +     R D   + L  PQ P+V T +       E P G N+IVA+
Sbjct: 723  TYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAI 782

Query: 717  LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA---- 772
             +YTGY+ ED++I+N+S+VDRG      Y++     S  G   D+ +   +  ++     
Sbjct: 783  ASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKG--FDQEEVFEKPTRETCQGM 840

Query: 773  -KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGSE 817
              +++  +D DGL   G  +   +       ++ +       TN R          + SE
Sbjct: 841  RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSE 900

Query: 818  SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
            +  VD V V +       +   IR R  R P IGDKF+SRHGQKG C   +   DMPF+ 
Sbjct: 901  TGIVDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT- 957

Query: 878  VTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDE 937
              G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF ++V           
Sbjct: 958  CEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVN---------- 1007

Query: 938  SKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRS 997
                V ++  +L   G++  G EVLY+G  G ++T +IFIGP YYQRL+HMV DK   R+
Sbjct: 1008 ----VQKISNLLSDYGYHLRGKEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRA 1063

Query: 998  TGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCG 1057
             G +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +RL   SD +   VC+LCG
Sbjct: 1064 RGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCG 1123

Query: 1058 SVLTA-TFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAA 1116
             +  A T  H  +                   C  C+    +  V MPY  + L  EL +
Sbjct: 1124 IMAIANTRTHTYE-------------------CRGCRNKTQISLVRMPYACKLLFQELMS 1164

Query: 1117 MNI 1119
            M+I
Sbjct: 1165 MSI 1167


>gi|340382420|ref|XP_003389717.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Amphimedon
            queenslandica]
          Length = 1175

 Score =  377 bits (969), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 324/1146 (28%), Positives = 502/1146 (43%), Gaps = 146/1146 (12%)

Query: 34   MFDHCRQAKISYTGKLMADVE--FQYLDAGSPVVRERFNF-GQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  DV+    Y D  S        F G+ P+ML++  C L     
Sbjct: 107  MPNEARLRNLTYSAPLYVDVKKTIIYEDEDSKEDPHPKTFIGKIPIMLRSTYCLLSQLTD 166

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V     L  Q    +     F  +   Y   A +  
Sbjct: 167  RDLNELNECPLDPGGYFIINGSEKV-----LIAQEKMATNTVHVFSKKESKYAHTAEIRS 221

Query: 151  CVRKDQSSV-TLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
             +      V TL +  L  G   +     G++ +         +P+ IV +AL   +D +
Sbjct: 222  YIENSSRPVSTLWVSQLSRGGTGVKKSAIGQKIVATLPYIKQEIPIMIVFRALGFVSDRD 281

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   + +    E   +  P + E   I   + Q+++L         IG   +    
Sbjct: 282  ILEHIIYDFTDI---EMMEMLKPSLDEAFVI---QEQNVALN-------FIG--VRGAKP 326

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     A+ +++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 327  GVTREKRIKYAKDILQKELLPHVGVSSFCETRKAYFLGYMVHRLLQAALGRRELDDRDHY 386

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +    + L K  +L   +  + G+ F+   LA IK       +K
Sbjct: 387  GNKRLDLAGPLLAFLFRGLFRN-LTKEVRLYAQKFIDKGRDFNL-ELA-IK-------TK 436

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   +   L TG    Q     Q RAG +    RL F   +S  R ++      G +  
Sbjct: 437  TITDGLRYSLATGNWGDQKKAH-QTRAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLA 494

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G   GL+ ++     ++                  IL  L
Sbjct: 495  RPRQLHNTHWGMICPAETPEGHAVGLVKNLALMGYIS-----------VGSQPAPILEFL 543

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  S       + ++G  VG+    E E ++  LRRL+      VS  S
Sbjct: 544  EEWSM-ENLEEITPSVIANSTKIFVNGNWVGI--HREPEHLMTTLRRLRRQMDIIVSEVS 600

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
            ++ D  E      +  G      L     K +    +I +  E   N            +
Sbjct: 601  MVRDIREREIRIFTDAGRICRPLLIVENQKLLLKKHHIQMLKEREYNNASWQDLVAGGVV 660

Query: 599  ELIGPFEQ-VFMEIRCPD--GGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPR 655
            E I   E+   M    PD    +GG       TH EIHP  +L V A++ P+ DHNQSPR
Sbjct: 661  EYIDCLEEETVMIAMTPDDLSTEGGASYCSTYTHCEIHPAMILGVCASIIPFPDHNQSPR 720

Query: 656  NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
            N YQ  M KQ MG  +     R D   + L  PQ P+V T +       E P G NAIVA
Sbjct: 721  NTYQSAMGKQAMGVYITNYHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINAIVA 780

Query: 716  VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA--- 772
            + +YTGY+ ED++I+N S++DRG+     Y++   + S  G   D+ +   +  +D    
Sbjct: 781  IASYTGYNQEDSVIMNASAIDRGLFRSVFYRSYKDEESKRG--FDQEEVFEKPTRDTCAG 838

Query: 773  --KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR----------------- 813
               + +  +D DG+   G  +   +   +I  KT +    +                   
Sbjct: 839  MRNAAYDKLDEDGIIAPGLRVSGND---AIIGKTISLPENDDELEGAPKRYQKRDASTFL 895

Query: 814  KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDM 873
            + SE+  +D V + +  +++  +   IR R  R P IGDKF+SRHGQKG C   +   DM
Sbjct: 896  RASETGIIDQVMLSL--NQDGYKFCKIRVRSVRVPQIGDKFASRHGQKGTCGITYRQEDM 953

Query: 874  PFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDT 933
            PF+   G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF ++V       
Sbjct: 954  PFT-CEGLSPDVIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVN------ 1006

Query: 934  GTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKF 993
                    V ++ E+L    ++  G EVLY+G  G +L  ++F+GP YYQRL+HMV DK 
Sbjct: 1007 --------VQKISELLNEYNYHLRGNEVLYNGHTGRKLNTQVFLGPTYYQRLKHMVDDKI 1058

Query: 994  QVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVC 1053
              R+ G +  +TRQP++GR R GG+RFGEMERD  +AHGAA  LH+RL+T SD +   +C
Sbjct: 1059 HSRARGPVQILTRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLHERLYTVSDAYKIHLC 1118

Query: 1054 SLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAE 1113
            +LCG +  A                          C  C+    +  + +PY  + L  E
Sbjct: 1119 NLCGLIAIANL------------------QTNSFECRGCKNKTQISQIEIPYACKLLFQE 1160

Query: 1114 LAAMNI 1119
            L +M+I
Sbjct: 1161 LMSMSI 1166


>gi|349605432|gb|AEQ00671.1| DNA-directed RNA polymerase I subunit RPA2-like protein, partial
            [Equus caballus]
          Length = 386

 Score =  377 bits (969), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 201/410 (49%), Positives = 258/410 (62%), Gaps = 29/410 (7%)

Query: 720  TGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVI 779
            TGYDMEDAMI+NK+S +RG  HG +Y++E IDLS+   + D       +  D + +   +
Sbjct: 1    TGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDDSLVFGVKPGDPRIVQK-L 59

Query: 780  DSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA- 838
            D DGLP++G  +  G+PY S  +  T        K  E+  VD + V   ++ +   K  
Sbjct: 60   DDDGLPFIGAQLQYGDPYYSYLNLNTGE-SLMYYKSKENCIVDNIKVCSNDTGSGKFKCI 118

Query: 839  NIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTI 898
             I  R  RNP IGDKF+SRHGQKG+ S+LWP  DMPF+  +GM PD++ NPH FPSRMTI
Sbjct: 119  CITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFT-ESGMVPDILFNPHGFPSRMTI 177

Query: 899  AMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHG 958
             ML+ES+A K  +LHG   DATPF  S           E  S ++  GEML+  G+N++G
Sbjct: 178  GMLIESMAGKSAALHGLCHDATPFIFS-----------EENSALEYFGEMLKAAGYNFYG 226

Query: 959  VEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGI 1018
             E LYSG+ G EL  +IFIG VYYQRLRHMVSDKFQVR+TG  D++T QPI GR   GGI
Sbjct: 227  TERLYSGISGVELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGI 286

Query: 1019 RFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGL 1078
            RFGEMERD+LLAHG ++LLHDRL  CSD  VA VC  CGS+L+     P           
Sbjct: 287  RFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKP----------- 335

Query: 1079 PPARAP---KKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
            PP+ +    +K  C  C  S  ++TV++PYVFRY  AELAAMNIK+ L +
Sbjct: 336  PPSWSAMRNRKYNCTLCNRSDTIDTVSVPYVFRYFVAELAAMNIKVKLDV 385


>gi|324120680|dbj|BAJ78731.1| RNA polymerase II second largest subunit [Ctenocephalides felis]
          Length = 1175

 Score =  377 bits (969), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 323/1156 (27%), Positives = 518/1156 (44%), Gaps = 166/1156 (14%)

Query: 34   MFDHCRQAKISYTGKLMADV-EFQYLDAGSPV--VRERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+ +   +D   PV    ++   G+ P+ML++  C L G   
Sbjct: 109  MPNEARLRNLTYSAPLYVDITKTIIMDGKDPVETQHQKTFIGKIPIMLRSTYCLLSGLTD 168

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  +  KA +  
Sbjct: 169  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKFAF--KAEIRS 223

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  +  G   +     G+  +         +P+ IV +AL    D +
Sbjct: 224  CLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 283

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +D++   E   +  P + E     + + Q+++L         IG   +    
Sbjct: 284  ILEHIIYDFDDQ---EMMEMVKPSLDE---AFVVQEQNVALN-------FIGA--RGARP 328

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  +     A  +++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 329  GVTKDKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   ++ +++ +   Q  I + GK F+   LA IK       +K
Sbjct: 389  GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFI-DRGKDFNL-ELA-IK-------TK 438

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   +   L TG    Q     Q RAG +    RL F   +S  R V+      G +  
Sbjct: 439  IITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 496

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G   GL+ ++     ++                + IL  L
Sbjct: 497  KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  S       + ++G  VG+    + E+++  LR+L+      VS  S
Sbjct: 546  EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMTTLRKLRRQMDIIVSEVS 602

Query: 551  VIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------------RNISLPSEE-- 594
            +I D  D E+               ++T   +  RP+            R+I +  E   
Sbjct: 603  MIRDIRDREI--------------RIYTDAGRICRPLLIVENRTLLLKKRHIDMLKERDY 648

Query: 595  ----------SQNIELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVV 641
                      S  +E I   E+   M    PD     R  A+  T  H EIHP  +L V 
Sbjct: 649  TNYGWQVLVASGVVEYIDTLEEETVMIAMSPDDLRQERAYAYCTTYTHCEIHPAMILGVC 708

Query: 642  ANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKY 701
            A++ P+ DHNQSPRN YQ  M KQ MG  +     R D   + L  P  P+V T +    
Sbjct: 709  ASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYL 768

Query: 702  GIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT----ETIDLSDDGN 757
               E P G N+IVA+L YTGY+ ED++ILN S+V+RG      Y++    ET  + D   
Sbjct: 769  RFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSETKRMGDQEE 828

Query: 758  KVDRGQKLFRRNKDAKSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTN 806
            + ++  +   +     +L+  +D DG+             +G+ I   E    +   T  
Sbjct: 829  QFEKPNRQTCQGM-RNALYDKLDEDGIIAPGIRVSGDDVIIGKTITLPENDDELEGTTKR 887

Query: 807  SWRTNSR---KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGV 863
              + ++    + SE+  VD V + + NS+   +   IR R  R P IGDKF+SRHGQKG 
Sbjct: 888  HTKRDASTFLRNSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGT 945

Query: 864  CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFA 923
            C   +   DMPF+   G+ PD+IINPHA PSRMTI  L+E +  K G+  G+  DATPF 
Sbjct: 946  CGIQYRQEDMPFT-CEGLMPDIIINPHAIPSRMTIGHLIECIQGKLGANKGEIGDATPFN 1004

Query: 924  NSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQ 983
            ++V               V ++  +L+  G++  G EV+Y+G  G ++  ++F+GP YYQ
Sbjct: 1005 DAVN--------------VQKISTLLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQ 1050

Query: 984  RLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHT 1043
            RL+HMV DK   R+ G +  + RQP++GR R GG+RFGEMERD  ++HGAA  L +RL  
Sbjct: 1051 RLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFE 1110

Query: 1044 CSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAM 1103
             SD +   VC+ CG +  A                          C  C+    +  V +
Sbjct: 1111 VSDPYRIHVCNFCGLIAIANL------------------RSNTFECKGCKNKTQISQVRL 1152

Query: 1104 PYVFRYLAAELAAMNI 1119
            PY  + L  EL +MNI
Sbjct: 1153 PYAAKLLFQELMSMNI 1168


>gi|123481595|ref|XP_001323594.1| DNA-directed RNA polymerase, beta subunit family protein [Trichomonas
            vaginalis G3]
 gi|121906462|gb|EAY11371.1| DNA-directed RNA polymerase, beta subunit family protein [Trichomonas
            vaginalis G3]
          Length = 1177

 Score =  377 bits (969), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 330/1145 (28%), Positives = 501/1145 (43%), Gaps = 143/1145 (12%)

Query: 39   RQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
            R   +SY+  L +D+    +D+   + +   +     + PVM+++  CHL      + ++
Sbjct: 115  RLRSLSYSLILRSDIRVVVMDSNKNMKQLDVDGVEIAKVPVMIRSEYCHLSNHRDDRAIN 174

Query: 96   --LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVR 153
              L E   + GGYFI+NG E+V         N P+   + S         D A  IR   
Sbjct: 175  DNLNECDYDPGGYFIVNGSEKVIIGQEHMVINKPICYAQKSMVK-----YDLATEIRSQP 229

Query: 154  K--DQSSVTLKLYYLLNGSVR----LGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTC 207
            K   + S    L+ L   + +    +   L   E  +P+ I+ +AL    D EI + +  
Sbjct: 230  KVFGRLSQPFNLFLLAPTAKQPERPIHAKLSKTEKTIPLFILFRALKFKGDKEILDLI-- 287

Query: 208  CYDEKYKKEKGAVGSPLVSERVKIILAEVQDLS--LTTRLQCLQHIGEHFQPVIDGLQSE 265
            CYD            P  SE + ++   +++ S  L  R  CL  +G+     I   +  
Sbjct: 288  CYD------------PEDSEFIDVLRPSIEESSSFLDDR-ACLDFVGKRCS--IAAEEKS 332

Query: 266  SYYAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEI 321
                 A+ ++ +Y+  HL    +D   K   + +M   L ++V      D+ D   N+ +
Sbjct: 333  QRLRKAQRLLNEYLLPHLGEKESDTTSKAFFIGYMAHNLINVVLGRRDQDDRDHYSNKRL 392

Query: 322  LLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTS 381
             L G LI        E  ++   + ++  +++        + A++ +    N  K I + 
Sbjct: 393  DLAGPLIGQLFALLFEKMIKSLTQHLEKRLKDGNIDQMAKSAADLTRQGVLN-FKSITSG 451

Query: 382  IETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKL 441
            +E  + TG  + Q       +AG +    RL FL  +S  R  +      G + T  R L
Sbjct: 452  LEYSIGTGNWSVQR--QAGSKAGVSQMLNRLTFLSTLSNLRRTNTPIGRDG-KLTGPRHL 508

Query: 442  LPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGM 501
                WG++CPV TP+G+ CGL+ ++     V    +             +I R+L   G 
Sbjct: 509  HNTHWGYICPVETPEGQSCGLIKNLALMSIVTVNRELEAG--------DAITRILEDTGT 560

Query: 502  IPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSE--IEKVVAHLRRLKVSAASVIPDDLEVG 559
            IP + ++          + L+G   G+   +   +E +++  R LK      IP D  V 
Sbjct: 561  IP-IQQITPDQIKDSTKIFLNGAWYGIHTDAYDLMETLLSERRSLK------IPSD--VS 611

Query: 560  YVPLSLGGAYPGLYLFTSPPKFVRPVRNI---------SLPSEESQN---------IELI 601
            +V          ++++T   +  RPV  +         S+  +E+ N         +E +
Sbjct: 612  FVHHIRDQE---IFIWTDGGRITRPVLIVNDMHLTLKKSVLYDENTNWKVLRYKGMVEYL 668

Query: 602  GPFEQVFMEIRCPDGGDGGRRNAFPA----THEEIHPTGMLSVVANLTPYSDHNQSPRNM 657
               E+    I          RN+       TH EIHP+ +  V   + P+ DHNQSPRN 
Sbjct: 669  DIDEEETKLIALSPADLEENRNSPTGVKTYTHCEIHPSLIFGVCGTIIPFPDHNQSPRNT 728

Query: 658  YQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVL 717
            YQC M KQ +G        R D   + L  PQ P+V T        ++ P G N  VA+ 
Sbjct: 729  YQCAMGKQAIGLYTTNYMIRMDSSSHVLWYPQKPLVATRNMRYLNFNKLPAGINVTVAIC 788

Query: 718  AYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAK--SL 775
             YTGY+ ED+++LN S++DRG+     ++T       DG +       F   +  K   L
Sbjct: 789  CYTGYNQEDSLMLNASAIDRGLFRSYFFRTYKETAEGDGTEGASEVFTFPDPQTVKGIKL 848

Query: 776  H--SVIDSDGLPYVGQM----------IHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDY 823
            H  S ID+DGL   G +          I P  P  +  D       +   +  E+  VD 
Sbjct: 849  HDSSKIDADGLAIPGAVVSAQDVIIGKISPDSP--TELDHRQYKDTSCVVRPMETGVVDL 906

Query: 824  VAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRP 883
            V   +   KNL Q A +R R  R P IGDKF SRHGQKGVC   +   DMPF+   GM P
Sbjct: 907  VLRTI-TKKNL-QLARVRTRQMRRPEIGDKFCSRHGQKGVCGMTYRQEDMPFTR-DGMVP 963

Query: 884  DLIINPHAFPSRMTIAMLLESVAAKGGSL---HGKFMDATPFANSVKKTNGDTGTDESKS 940
            D+I+NPHA PSRMTI  L+E +  K  ++   +    DATPF                  
Sbjct: 964  DIIMNPHALPSRMTIGHLIECLLGKCTAIDPQNADEGDATPFCGVT-------------- 1009

Query: 941  LVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGT 1000
             VD + + L+  GF  +G E LY+G  G  L  +I+ GP YYQRL+HMV DK   R+ G 
Sbjct: 1010 -VDAIAKRLQDAGFEKYGNETLYNGRSGKRLKAKIYFGPTYYQRLKHMVGDKAHARALGR 1068

Query: 1001 MDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVL 1060
               I RQP+ GR R GG+RFGEMERD L+AHG + ++ DRL   SD +   VC  CG + 
Sbjct: 1069 KSLILRQPVDGRARNGGLRFGEMERDCLIAHGVSAMMRDRLLENSDRYFVPVCKTCGLI- 1127

Query: 1061 TATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIK 1120
                      AI +  G         + C ACQ    +  V MPY F+ +  EL +M I 
Sbjct: 1128 ----------AIEKTDG--------TMECPACQDEGRLAKVEMPYAFKLVIQELMSMCIA 1169

Query: 1121 ITLQL 1125
              L L
Sbjct: 1170 PRLNL 1174


>gi|324120642|dbj|BAJ78712.1| RNA polymerase II second largest subunit [Reticulitermes speratus]
          Length = 1150

 Score =  377 bits (969), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 323/1155 (27%), Positives = 513/1155 (44%), Gaps = 164/1155 (14%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   +    ++   G+ P+ML++  C L G   
Sbjct: 84   MPNEARLRNLTYSAPLYVDITKTIVKDGEDPIETQHQKTFIGKIPIMLRSTYCLLNGLTD 143

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  +  KA +  
Sbjct: 144  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKFAF--KAEIRS 198

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  +  G   +     G+  +         +P+ IV +AL    D +
Sbjct: 199  CLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 258

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +D+           P + E VK  L E     +  +   L  IG   +    
Sbjct: 259  ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RGARP 303

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  +     A  +++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 304  GVTKDKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 363

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   ++ +++ +   Q  I + GK F+   LA IK       +K
Sbjct: 364  GNKRLDLAGPLLAFLFRGLFKNLMKEVRIYAQKFI-DRGKDFNL-ELA-IK-------TK 413

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   +   L TG    Q     Q RAG +    RL F   +S  R V+      G +  
Sbjct: 414  IITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 471

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G   GL+ ++     ++                + IL  L
Sbjct: 472  KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 520

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  S       + ++G  VG+    + E+++A LR+L+      VS  S
Sbjct: 521  EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVSEVS 577

Query: 551  VIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------------RNISLPSEESQ 596
            +I D  D E+               ++T   +  RP+            R+I +  E   
Sbjct: 578  MIRDIRDREI--------------RIYTDAGRICRPLLIVEGGNLLLKKRHIDMLKEREY 623

Query: 597  N------------IELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVV 641
            N            +E I   E+   M    PD     +  A+  T  H EIHP  +L V 
Sbjct: 624  NNYGWQVLVASGVVEYIDTLEEETVMIAMSPDDLRQDKEYAYCTTYTHCEIHPAMILGVC 683

Query: 642  ANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKY 701
            A++ P+ DHNQSPRN YQ  M KQ MG  +     R D   + L  P  P+V T +    
Sbjct: 684  ASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYL 743

Query: 702  GIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVD 760
               E P G N+IVA+L YTGY+ ED++I+N S+V+RG      ++  +  +    G++ +
Sbjct: 744  RFRELPAGINSIVAILCYTGYNQEDSVIMNASAVERGFFRSVFFRAYKDAESKRIGDQEE 803

Query: 761  RGQKLFRRNKDA--KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNS 807
            + +K  R        +L+  +D DG+             +G+ I   +    +   T   
Sbjct: 804  QFEKPTRTTCQGMRNALYDKLDDDGIISPGIRVSGDDVVIGKTITLPDTEDELEGTTKRF 863

Query: 808  WRTNSR---KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVC 864
             + ++    + SE+  VD V + + NS+   +   IR R  R P IGDKF+SRHGQKG C
Sbjct: 864  TKRDASTFLRNSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTC 921

Query: 865  SQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFAN 924
               +   DMPF+   G+ PD+IINPHA PSRMTI  L+E +  K  S  G+  DATPF +
Sbjct: 922  GIQYRQEDMPFT-CEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSSNKGEIGDATPFND 980

Query: 925  SVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQR 984
            +V               V ++  +L+  G+   G EV+Y+G  G ++  +IF+GP YYQR
Sbjct: 981  AVN--------------VQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQIFLGPTYYQR 1026

Query: 985  LRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTC 1044
            L+HMV DK   R+ G +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +RL   
Sbjct: 1027 LKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEV 1086

Query: 1045 SDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMP 1104
            SD +   VC+ CG +  A   +                      C  C+    +  V +P
Sbjct: 1087 SDPYRIHVCNFCGLIAIANLRN------------------NTFECKGCKNKTQISQVRLP 1128

Query: 1105 YVFRYLAAELAAMNI 1119
            Y  + L  EL AMNI
Sbjct: 1129 YAAKLLFQELMAMNI 1143


>gi|209879223|ref|XP_002141052.1| RNA polymerase beta subunit [Cryptosporidium muris RN66]
 gi|209556658|gb|EEA06703.1| RNA polymerase beta subunit, putative [Cryptosporidium muris RN66]
          Length = 1184

 Score =  377 bits (969), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 314/1141 (27%), Positives = 483/1141 (42%), Gaps = 183/1141 (16%)

Query: 68   RFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERV----------FR 117
            R    + P+ML++  C       ++L S  E   + GGYFI+NG+E+V          F 
Sbjct: 141  RLPLAKIPIMLRSEYCWTHNISERELQSAGECIYDQGGYFIINGMEKVLIGQERMANNFV 200

Query: 118  SVILPKQNYPMSMVRSSFRDRREGY-TDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFW 176
             +   KQ    + + +  R  REG        ++     Q  V   L Y+          
Sbjct: 201  YLFQKKQPSKYTWI-AEVRSNREGMQATSGFSVKLRGGSQGQVVATLPYIRTD------- 252

Query: 177  LQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEV 236
                   +P+ I+ +AL   +D +I   L C YD     +  A+  P + E  +    EV
Sbjct: 253  -------IPIAILFRALGVLSDKDIL--LRCVYDFS-DSQMLAILRPSLEETFEFSSQEV 302

Query: 237  QDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD---YIFVHLNDNNDKFNLL 293
                      CL  IG+   P +  ++ +      E + R+   ++ V +     K   +
Sbjct: 303  ----------CLDFIGKR-GPTVGAIREKRIQYARELLEREVLPHVGVTIGCEFRKAYFI 351

Query: 294  IFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIEN 353
             +M+ +L          D+ D    + + L G L+     +     ++  ++L+Q  I +
Sbjct: 352  GYMVHRLCMGALGRVPEDDRDHFGKKRLDLAGPLVAASFGQSFRKMMKDMRRLLQRNI-D 410

Query: 354  NGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLN 413
            NGK+FD   +      + +    Q  T      + G++          R G      RL 
Sbjct: 411  NGKEFDVAGVIRSASYITQTLQYQFATGNWGKDRDGKIV---------RTGVAQVLSRLT 461

Query: 414  FLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVA 473
            F   +S+ R ++      G      R+L    WG +CP  TP+G   GL+ ++   C ++
Sbjct: 462  FASALSYLRRLNTPLGREGT-LAKPRQLHNTHWGMICPAETPEGHAVGLVKNLALMCEIS 520

Query: 474  SYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSE 533
              Y      R F+      +R  +    + S+ ++        + V L+G  VG    SE
Sbjct: 521  VGY------RPFA------IRTFLDEWGMDSIDEVPPEDIKDKIKVFLNGNWVGCFDDSE 568

Query: 534  IEKVVAHLRRLKVSAASVIPDDLEVGY-VPLSLGGAYPGLYLFTSPPKFVRPVRNI---- 588
                + +LR ++ S         E+ Y   + L      + LFT   + +RP+  +    
Sbjct: 569  --DSITNLRMIRRSG--------EIPYETSIVLDVVNREVKLFTDAGRSMRPLYIVGEDG 618

Query: 589  SLPSEESQNIELIG---------PFEQVFMEIRCPDGG---------------------- 617
             L   +S    L+G            ++  E+  P+GG                      
Sbjct: 619  ELKIRKSHIATLLGIKMPENNSNEDMKILSEVDLPEGGISRDSDFTWDDLIKSGIIEYID 678

Query: 618  ----------------DGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQ 661
                               R      TH EIHP+ +L + A++ P+ DHNQSPRN+YQ  
Sbjct: 679  CEEEETAMIAMFMNDLRDARGYCSTYTHCEIHPSLILGICASIIPFPDHNQSPRNVYQSA 738

Query: 662  MAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTG 721
            M KQ MG        R D   Y L  PQ P+V T   T     E P G N IV ++ Y+G
Sbjct: 739  MGKQAMGVYTSNYNVRMDTLGYVLYYPQKPLVTTRAMTYMRFRELPAGINCIVGIMCYSG 798

Query: 722  YDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKS-----LH 776
            Y+ ED++I+N+SS+DRG+     ++T   +    G+ +    +L   N D  S      +
Sbjct: 799  YNQEDSLIMNQSSIDRGLFRSVFFRTYVSEEKQIGSNLIEAFEL--PNPDEVSGLRFGNY 856

Query: 777  SVIDSDGLPYVGQMIH------------PGEPYCSIYDKTTNSWRTNSRKGSESVFVDYV 824
              +D DGL   G  +             P E   +  ++ T    +   + SE   VD V
Sbjct: 857  GNLDRDGLIEPGNRVLGDDIIIGKFGPIPPEERDNRIERLTKRDCSIGLRSSEHGVVDEV 916

Query: 825  AVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPD 884
             +   NSK + +   ++ R  R P IGDKF+SRHGQKG     +   DMPF+   G+ PD
Sbjct: 917  LLS-TNSKGV-KFTKVKVRTIRVPHIGDKFASRHGQKGTIGITYRMEDMPFTQ-DGIVPD 973

Query: 885  LIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDE 944
            +I+NPHA PSRMTI  L+E +  K  ++ G   DATPF               +K  V+E
Sbjct: 974  IIMNPHAIPSRMTIGHLIECILGKTCAIEGMEGDATPF---------------TKVTVEE 1018

Query: 945  LGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQI 1004
            +   L   GF  +G EV+Y+G  G +L   IFIGP YYQRL+HMV DK   R+ G +  +
Sbjct: 1019 ISNRLHAAGFQRNGNEVMYNGHTGRQLESRIFIGPTYYQRLKHMVDDKIHARAKGAITML 1078

Query: 1005 TRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATF 1064
            TRQP +GR R GG+RFGEMERD +++HGAA +L +RL    D +   VC LCG + TA  
Sbjct: 1079 TRQPREGRSREGGLRFGEMERDCMISHGAAKMLKERLFDQCDAYRVHVCELCGLICTADL 1138

Query: 1065 IHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQ 1124
                                +   C  C     +  V +PY  + L  EL AM+I   LQ
Sbjct: 1139 ------------------GKQHYECKVCSNKSQISQVCLPYACKLLLQELMAMSIYPRLQ 1180

Query: 1125 L 1125
            L
Sbjct: 1181 L 1181


>gi|66363138|ref|XP_628535.1| RNA polymerase beta subunit [Cryptosporidium parvum Iowa II]
 gi|46229549|gb|EAK90367.1| RNA polymerase beta subunit [Cryptosporidium parvum Iowa II]
          Length = 1177

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 318/1166 (27%), Positives = 495/1166 (42%), Gaps = 174/1166 (14%)

Query: 36   DHCRQAKISYTGKLMADVE---FQYLDAGSPV-----VRERFNFGQFPVMLKTRRCHLQG 87
            +  R   ++Y+  +  D E   ++  D GS       V  R    + P+ML++  C    
Sbjct: 107  NEARLRNLTYSSPVFVDAEQKVYKLEDDGSETLVYETVYSRLPLAKIPIMLRSEYCWTHN 166

Query: 88   ADSQKLVSLKEEAAEMGGYFILNGLERVF--------RSVILPKQNYPMSMVR-SSFRDR 138
               ++L S  E   + GGYFI+NG+E+V           V L ++N P      +  R  
Sbjct: 167  ISERELQSAGECVYDQGGYFIINGMEKVLVGQERMANNFVYLFQKNQPSKYTWIAEIRSN 226

Query: 139  REGY---TDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVD 195
            REG    +  +V +R    +Q  +   L Y+                 +P+ I+ +AL  
Sbjct: 227  REGMQATSGFSVKLRGSDGNQGQIVATLPYIRTD--------------IPIAILFRALGV 272

Query: 196  TNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHF 255
             +D +I +   C YD     +  A+  P + E  +    +V          CL  IG+  
Sbjct: 273  LSDKDILSR--CVYDFN-DTQMLALLRPSLEETFEFFSQDV----------CLDFIGKRG 319

Query: 256  QPVIDGLQSESYYA--VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNP 313
              V    +    YA  + E  +  ++ V     + K   + +M+ KL          D+ 
Sbjct: 320  PTVGAAREKRIQYAKELFEKELLPHVGVTSGSESRKAYFIGYMVHKLCLGALGRVPEDDR 379

Query: 314  DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKN 373
            D    + + L G L+     +     ++  ++L+Q  I+ NGK+FD   +      + + 
Sbjct: 380  DHFGKKRLDLAGPLVAASFGQCFRKMMKDVRRLLQRNID-NGKEFDVAGVIRSASYITQT 438

Query: 374  PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
               Q  T      K G++          R G +    RL F   +S+ R ++      G 
Sbjct: 439  IQYQFATGNWGKDKDGKII---------RTGVSQVLSRLTFTSALSYLRRLNTPLGREG- 488

Query: 434  RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
            +    R+L    WG +CP  TP+G   GL+ ++   C ++  Y            R   +
Sbjct: 489  KFAKPRQLHNTHWGMICPAETPEGHSVGLVKNLALMCEISVGY------------RPYAI 536

Query: 494  RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIP 553
            R  +    + S+ ++   G    + V L+G  VG    S  E  +++LR ++ S      
Sbjct: 537  RTFLDEWGMDSIDEIPPEGIKRKIKVFLNGNWVGCFDDS--EDSISNLRMIRRSG----- 589

Query: 554  DDLEVGY-VPLSLGGAYPGLYLFTSPPKFVRP-----------VRNISLPSEESQNIELI 601
               E+ Y   + L      + LFT   + +RP           ++   + S  ++N    
Sbjct: 590  ---EIPYETSIVLDVVNREVKLFTDSGRSMRPLYIVGEDGDLKIKKSHINSLLNENPSFD 646

Query: 602  GPFEQVFMEIRCPDGGDGGRRNAFPATHEE-------------------------IHPTG 636
               E    +    D  + G         EE                         IHP+ 
Sbjct: 647  EKMEDEKHDYTWDDLVNTGIIEYIDCEEEETSMIAMFINDLRIDRGYCSTYTHCEIHPSL 706

Query: 637  MLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTN 696
            +L V A++ P+ DHNQSPRN+YQ  M KQ MG        R D   Y L  PQ P+V T 
Sbjct: 707  ILGVCASIIPFPDHNQSPRNVYQSAMGKQAMGVYTSNYNVRMDTLGYVLYYPQKPLVTTR 766

Query: 697  TYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDG 756
              T     E P G N IV ++ Y+GY+ ED++I+N+SS+DRG+     ++T   +    G
Sbjct: 767  AMTYMRFRELPAGINCIVGIMCYSGYNQEDSLIMNQSSIDRGLFRSVFFRTYVSEEKQVG 826

Query: 757  NKVDRGQKLFRRNKDAKSL----HSVIDSDGLPYVGQM-------------IHPGEPYCS 799
            + +    +L    ++   L    +  +D DGL   G               I+P +    
Sbjct: 827  SNLIEAFEL-PNPEEVSGLRFGNYGNLDLDGLIEPGNRVLGDDIIIGKVGPINPEDRDTR 885

Query: 800  IYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHG 859
            I   T        R  SE   VD V +   NSK + + A ++ R  R P +GDKF+SRHG
Sbjct: 886  IQKLTKRDCSVGIRT-SEHGVVDEVLLS-TNSKGV-KFAKVKVRTIRIPHVGDKFASRHG 942

Query: 860  QKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDA 919
            QKG     +   DMPF+   G+ PD+I+NPHA PSRMTI  L+E +  K  ++ G   DA
Sbjct: 943  QKGTIGITYRTEDMPFTQ-DGIIPDIIMNPHAIPSRMTIGHLIECLLGKACAIQGLEGDA 1001

Query: 920  TPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGP 979
            TPF               +K  V+E+   L + GF  +G EV+Y+G  G  L   IFIGP
Sbjct: 1002 TPF---------------TKITVEEISSRLHSSGFQKNGNEVMYNGHTGKRLESRIFIGP 1046

Query: 980  VYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHD 1039
             YYQRL+HMV DK   R+ G +  +TRQP +GR R GG+RFGEMERD +++HGAA +L +
Sbjct: 1047 TYYQRLKHMVDDKIHARARGAVTMLTRQPREGRAREGGLRFGEMERDCMISHGAAKMLKE 1106

Query: 1040 RLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGME 1099
            RL    D +   VC +CG +  A                      +   C+AC     + 
Sbjct: 1107 RLFDQCDAYRVHVCEMCGLICIADL------------------GKQHFECNACNNKSRIS 1148

Query: 1100 TVAMPYVFRYLAAELAAMNIKITLQL 1125
             + +PY  + L  EL AM+I   L L
Sbjct: 1149 QICLPYACKLLLQELMAMSIYPRLHL 1174


>gi|324120654|dbj|BAJ78718.1| RNA polymerase II second largest subunit [Uroleucon
            nigrotuberculatum]
          Length = 1177

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 319/1144 (27%), Positives = 511/1144 (44%), Gaps = 142/1144 (12%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYL-DAGSPVVRERFN--FGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    + D   PVV +      G+ P+ML++  C L G + 
Sbjct: 110  MPNEARLRNLTYSAPLYVDITKTVIKDGEEPVVTQHSKSFIGKIPIMLRSTYCLLFGLND 169

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  Y  KA +  
Sbjct: 170  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGK--YAFKAEIRS 224

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  +  G   +     G+  +         +P+ IV +AL    D +
Sbjct: 225  CLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 284

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +D+           P + E VK  L E     +  +   L  IG   +    
Sbjct: 285  ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGARP 329

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  +     A  +++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 330  GVTKDKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY 389

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   ++ +++ +   Q  I+  GK F+  +LA IK       +K
Sbjct: 390  GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDR-GKDFNL-DLA-IK-------TK 439

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   +   L TG    Q     Q RAG +    RL F   +S  R V+      G +  
Sbjct: 440  LITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 497

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG LCP  TP+G   GL+ ++     ++                + IL  L
Sbjct: 498  KPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 546

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  S       + ++G  VG+    + E+++  LR+L+      VS  S
Sbjct: 547  EEWSM-ENLEEIAPSAIVDATKIFVNGCWVGI--HRDPEQLMGTLRKLRRQMDIIVSEVS 603

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
            +I D  +      +  G      L     K +   R+I    E   N            +
Sbjct: 604  IIRDIRDREIRIYTDAGRICRPLLIVENGKLLLKKRHIDSLKERDYNNYGWQVLVSNGVV 663

Query: 599  ELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQSPR 655
            E I   E+   M    PD     +  A+  T  H EIHP  +L V A++ P+ DHNQSPR
Sbjct: 664  EYIDTLEEETTMIAMSPDDLRQEKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPR 723

Query: 656  NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
            N YQ  M KQ MG  +     R D   + L  P  P+V T +       E P G N+IVA
Sbjct: 724  NTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVA 783

Query: 716  VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRR-NKDA-- 772
            +L YTGY+ ED++ILN S+V+RG      +++       +  ++   +++F + N+ +  
Sbjct: 784  ILCYTGYNQEDSVILNASAVERGFFRSVFFRSYK---DSESKRIGDQEEVFEKPNRQSCQ 840

Query: 773  ---KSLHSVIDSDGLPYVGQMIHPGEPYCSIY-------DKTTNSWRTNSR-------KG 815
                +++  +D DG+   G  +   +             D+   + +  S+       + 
Sbjct: 841  GMRNAIYDKLDDDGIISPGLRVSGDDVIIGKTMTLPDNEDELEGTTKKYSKRDCSTFLRN 900

Query: 816  SESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPF 875
            SE+  +D V + + NS+   +   IR R  R P IGDKF+SRHGQKG C   +   DMPF
Sbjct: 901  SETGLIDQVLLTL-NSEGY-KFCKIRVRSERIPQIGDKFASRHGQKGTCGIQYRQEDMPF 958

Query: 876  SGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGT 935
            +   G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF ++V         
Sbjct: 959  T-CEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVN-------- 1009

Query: 936  DESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQV 995
                  V ++  +L+  G+   G EV+Y+G  G ++  ++F+GP YYQRL+HMV DK   
Sbjct: 1010 ------VQKISTLLQEYGYQLRGNEVMYNGFSGRKINAQVFLGPTYYQRLKHMVDDKIHS 1063

Query: 996  RSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSL 1055
            R+ G +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +RL   SD +   +C+ 
Sbjct: 1064 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHICNF 1123

Query: 1056 CGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELA 1115
            CG +  A   +                      C  C+    +  V +PY  + L  EL 
Sbjct: 1124 CGLIAIANLRN------------------NTFECKGCKNKTQISQVKLPYAAKLLFQELM 1165

Query: 1116 AMNI 1119
            +MNI
Sbjct: 1166 SMNI 1169


>gi|326436004|gb|EGD81574.1| DNA-directed RNA polymerase II polypeptide [Salpingoeca sp. ATCC
            50818]
          Length = 1193

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 322/1179 (27%), Positives = 505/1179 (42%), Gaps = 204/1179 (17%)

Query: 39   RQAKISYTGKLMADVEFQY---LDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
            R   ++Y  ++  + E  Y    D+         + G+ P+ML+++ C L G  +  L +
Sbjct: 110  RLRNLTYWSEMFVEAEETYRETQDSEPETTTTSVHLGKIPIMLRSKFCLLNGKLNDDLYN 169

Query: 96   LKEEAAEMGGYFILNGLERVF--------RSVILPKQNYPMSMVRSSFRD--RREGYTDK 145
            L E   + GGYFI+NG E+V          +V + ++  P  +  +  +    R      
Sbjct: 170  LNECPLDPGGYFIINGSEKVLLAQEKMAPNTVFVFEKKDPKYLFVTEIKSVLERSPRPPS 229

Query: 146  AVVIRCVRKDQSS--------VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTN 197
            +++++ +R  QS+        VTL  Y   +  V + F   G E      I+   + D N
Sbjct: 230  SLLVKLLRGSQSAARSGPVLHVTLP-YVRQDVPVVVVFRALGFED--DRSILEHIIYDFN 286

Query: 198  DLEIFNHLTCCYDEKYKKE----------KGAVGSPLVSERVKIILAEVQDLSLTTRLQC 247
            D+E+   L    DE +  +          K AV SP +S+  +I  A  +D+    + + 
Sbjct: 287  DMEMMEMLKPSLDEAFVIQNRDVALDWIGKRAVQSPAISKERRIHYA--KDI---LQKEL 341

Query: 248  LQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHT 307
            L HIG        G   E+  A                       L +M+ +        
Sbjct: 342  LPHIGL-------GPHCETKKAF---------------------FLGYMVHRTLQAALRR 373

Query: 308  SVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIK 367
               D+ D   N+ + + G L     +    +  ++ +  IQ ++          N +   
Sbjct: 374  RQLDDRDHYGNKRLDMSGPLTGFLFRTLFRNVTKELRSYIQKKL----------NRSEEI 423

Query: 368  KVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRG 427
            K+     SKQI + +     TG   TQ     + RAG +    RL F   +S  R ++  
Sbjct: 424  KLSAGLNSKQIESGLRYSFATGNWGTQAKA-FEARAGVSQVLNRLTFASTLSHLRRLNSP 482

Query: 428  ASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSK 487
                G +    R+L    WG++CP  TP+G   GL+ ++     V    D+         
Sbjct: 483  IERTG-KIAKPRQLHNTHWGYICPAETPEGHAVGLVKNLALMASVTVGGDA--------- 532

Query: 488  MRTSILRVLIGVGMIPSLPKLV-KSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKV 546
              T +L +L  +GM  SL  L  +S       + ++G  VG+    E E+VV +L   + 
Sbjct: 533  --TPVLELLNSIGM-ESLDDLASRSVIRDTTKIFVNGAWVGI--HMEPEEVVRNLHLCRR 587

Query: 547  SAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPS-------------- 592
            + A +I  +     V +        +++++   +  RP+  +  P               
Sbjct: 588  TQADMIQSE-----VSIFRDIREREIHVYSDSGRLTRPLLIVEKPELDDTFHDGTQQQQT 642

Query: 593  --------EESQNIELIGPFEQVF----------------------MEIRCPDG---GDG 619
                    E+ Q+  +   FE  +                      M    PD     D 
Sbjct: 643  LALKKQHLEKLQSAAMQNAFEATYSWSDLVREGLVEYIDVNEEDTTMIAMTPDDFEMSDE 702

Query: 620  GRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRAD 679
                    TH EIHP+ +L + A++ P+ DHNQSPRN YQ  M KQ MG        R D
Sbjct: 703  QDLYCTTYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYTTNFHIRLD 762

Query: 680  QKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGM 739
               + L  PQ P+V+T +       + P G NAIVA++ YTGY+ ED++I+NK +VDRG+
Sbjct: 763  TLAHVLYYPQQPLVKTRSMDYMYFKDLPAGINAIVAIMCYTGYNQEDSVIMNKCAVDRGL 822

Query: 740  CHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPY 797
                 Y++      + G +V + +K  R        S +  ++ DGL   G  +   +  
Sbjct: 823  FRSVFYRSYASSEENTGREVIKFEKPSRETCAGMRNSNYGKLEDDGLIAPGTSVTGDD-- 880

Query: 798  CSIYDKTT----NSWRTNSR-------------KGSESVFVDYVAVDMKNSKNLPQKANI 840
             +I  +T     N+   +SR             + SE+  +D V V M       +   I
Sbjct: 881  -AIIGRTMELPPNAEARDSRLARFEKLDKSVFLRASENGIIDQVMVAMGPKGT--RFVKI 937

Query: 841  RFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAM 900
            R R  R P IGDKF+SRHGQKG C   +   DMPF+   G+ PD+I+NPHA PSRMTI  
Sbjct: 938  RVRSIRVPQIGDKFASRHGQKGTCGMQYSQEDMPFT-CQGITPDIIVNPHAIPSRMTIGH 996

Query: 901  LLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVE 960
            L+E +  K G L G F DATPF                   V+E+   L    F+ +G E
Sbjct: 997  LIECLLGKVGCLEGAFGDATPFIEVT---------------VNEVASALEAHNFHKYGNE 1041

Query: 961  VLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRF 1020
            VLY+G  G ++  ++F GP YYQRL+HMV DK   R+ G +  +T+QP++GR R GG+RF
Sbjct: 1042 VLYNGFTGRKMQAQVFFGPTYYQRLKHMVDDKIHARARGPLQILTKQPVEGRSRDGGLRF 1101

Query: 1021 GEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPP 1080
            GEMERD ++AHG+A  L +RL   SD +   VC +CG +  A                  
Sbjct: 1102 GEMERDCMIAHGSAQFLRERLFEVSDPYRIHVCDICGLICIANL---------------- 1145

Query: 1081 ARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
                 ++ C AC  +  +  V +PY  + L  EL +M I
Sbjct: 1146 --NKNELECKACSNTTRVSQVRIPYACKLLFQELMSMCI 1182


>gi|241614087|ref|XP_002407492.1| RNA polymerase III, putative [Ixodes scapularis]
 gi|215502825|gb|EEC12319.1| RNA polymerase III, putative [Ixodes scapularis]
          Length = 1141

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 342/1223 (27%), Positives = 528/1223 (43%), Gaps = 232/1223 (18%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMF--------------------------------- 35
            F  ++ LVRHHI+SF++ ++  + E+                                  
Sbjct: 40   FLSVQGLVRHHIDSFNHFINVEIKEIVRANEKITSDADPQFYLKYLDIHIGKPDVEENCV 99

Query: 36   -------DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGA 88
                     CR   ++Y+  +  D+E  Y      VVR  F  G+ P+ML++  C L   
Sbjct: 100  ASKATTPHECRLRDMTYSAPITVDIE--YTRGTQRVVRGDFPIGRMPIMLRSANCILADK 157

Query: 89   DSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVV 148
               ++  + E   + GGYF++NG+ERV   +++ +Q     M+     DR+ G   +   
Sbjct: 158  THFQMSQMNECPYDPGGYFVVNGVERV---ILMQEQLSKNRMIVEE--DRKGGLMCQVTS 212

Query: 149  IRCVRKDQSSVTLK--LYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLT 206
                RK +++V  K   YYL +               +P+ IV K +   +D EI   + 
Sbjct: 213  STHERKSRTNVGTKHGRYYLKHNCFTED---------IPIAIVFKGMGLESDQEIVQMI- 262

Query: 207  CCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIG---EHFQPVIDGLQ 263
                       G+  S L +      L E     + T+ Q L+++G   +H +    G  
Sbjct: 263  -----------GSADSILST--FAPSLEECHRSQVFTQTQALRYLGGKLKHRRMFFAGGP 309

Query: 264  SESYYAVAETVIRDYIFVHLNDNNDKFNL----LIFMLQKLFSLVDHTSVSDNPDSLQNQ 319
             ++    A  ++   +  H+   +  F +    L  M++++     +  + D+ D   N+
Sbjct: 310  RKTPVDDARDILATTVLAHVPVEHYNFRVKAMYLALMIRRVIEAQTNREMIDDRDYYGNK 369

Query: 320  EILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIG 379
             + L G L+++ L E L        KL+ D+     +   F  +  +++ +       I 
Sbjct: 370  RLELAGSLLSL-LFEDLFKRFNTELKLVADKTIPKVRATQFDVVKYVRQDL-------IT 421

Query: 380  TSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-V 438
              + + + TG    +      +R G T    RL+++  +     V+  + F   R  S  
Sbjct: 422  NGLVSSISTGNWTVKRF--KMERIGVTQVLTRLSYISALGMMTRVN--SQFEKTRKVSGP 477

Query: 439  RKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIG 498
            R L P  +G LCP  TP+GE CGL+ ++     + +  +              I+R+L+ 
Sbjct: 478  RSLQPSQFGMLCPSDTPEGEACGLVKNLALMTHITTDLEE-----------APIVRLLLN 526

Query: 499  VGMIP-SLPKLVKSGPPAVLSVLLDGRVVGVIPSSEI---------------EKVVAHLR 542
            +G+    L    +   P+V  V L+G ++GV+ +                  E V  H  
Sbjct: 527  LGVEDVHLLNGEELSDPSVYLVFLNGGIIGVVHNHARLLRTLRLLRRSGHLSEFVSLHSS 586

Query: 543  RLKVSAASVIPDDLEVGYVPLSLGGAYP------------GLYLFTSPPKFVRP--VRNI 588
            R++    ++  D   +    + + G  P            GL  F     FVR   V  +
Sbjct: 587  RVQ-RCVNISADGGRMCRPYIVVEGGRPLVTAAHLEDLTRGLLFFND---FVRRGLVEFL 642

Query: 589  SLPSEESQNIEL----IGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANL 644
             +  E    I L    IGP E   +EI                      P  +L V A L
Sbjct: 643  DVNEENDSYIALRECDIGP-ETTHLEI---------------------EPFTLLGVCAGL 680

Query: 645  TPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGID 704
             PY  HNQSPRN YQC M KQ MG      + R D  LY L  P  P+V+T T      +
Sbjct: 681  IPYPHHNQSPRNTYQCAMGKQAMGTIALNQRNRIDSLLYLLVYPHRPMVKTKTIELIHFE 740

Query: 705  EYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DRGQ 763
            + P G NA VAV++Y+GYD+EDA+++N+SS+DRG    Q+ + +   L    N+  DR  
Sbjct: 741  DIPAGQNATVAVMSYSGYDIEDAIVMNRSSIDRGFGRCQVCRHQKCTLKRYANQSHDRVM 800

Query: 764  KLFRRNKDAKSL--HSVIDSDGLPYVGQMI-------------------HPGEPYCSIYD 802
                 +   K +  H  +D+DG+   G  I                    PG+P    + 
Sbjct: 801  GPLVDSTTMKPIWKHEPLDTDGIARPGDRIENRQVLVNKWVPSASSVGAQPGQPSPPEHK 860

Query: 803  KTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKG 862
            +   ++     KG E V V+ V +     +    K  +  R TR P IGDKFSSRHGQKG
Sbjct: 861  EVPVAY-----KGLEPVHVEKVLISSNTEEAFLIK--LLLRQTRRPEIGDKFSSRHGQKG 913

Query: 863  VCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPF 922
            V   +    DMPFS   G+ PDLI+NPH FPSRMT+  L+E +A K G L+GKF   T F
Sbjct: 914  VVGLIAQQEDMPFSD-QGVCPDLIMNPHGFPSRMTVGKLIELLAGKAGVLNGKFHYGTAF 972

Query: 923  ANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYY 982
              S                V ++GE L   GFNY G + L SG+ G  L+  I+ GP+YY
Sbjct: 973  GGSK---------------VQDVGEELIRRGFNYRGKDCLTSGITGEPLSAYIYFGPIYY 1017

Query: 983  QRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLH 1042
            Q+L+HMV DK   R+ G    +TRQP +GR R GG+R GEMERD L+ HGA+ LL +RL 
Sbjct: 1018 QKLKHMVMDKVHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGHGASLLLLERLM 1077

Query: 1043 TCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVA 1102
              SD    DVC  CG +  + +                        CH C++S+ M ++ 
Sbjct: 1078 LSSDACQVDVCRGCGLLGYSRW------------------------CHFCRSSRTMASLR 1113

Query: 1103 MPYVFRYLAAELAAMNIKITLQL 1125
            +PY  + L  EL +MNI   L L
Sbjct: 1114 VPYACKLLFQELLSMNIIPRLDL 1136


>gi|341038522|gb|EGS23514.1| DNA-directed RNA polymerase-like protein [Chaetomium thermophilum
            var. thermophilum DSM 1495]
          Length = 1157

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 332/1187 (27%), Positives = 514/1187 (43%), Gaps = 185/1187 (15%)

Query: 8    DFEPLRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRE 67
            +F  +R L     +  D+   + ++ M   CR   ++Y   ++ D+   Y      +VR+
Sbjct: 83   EFTDIRVLTPTRNDYSDFKARDEVTPM--ECRLRDMTYAAPVVVDI--VYSRDRKRIVRK 138

Query: 68   RFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYP 127
                 + PVMLK+ +C L  A + ++  + E   + GGYFI+NG E+    VIL ++   
Sbjct: 139  DIPLCRIPVMLKSSKCVLSKATNAQMEIMNECPLDPGGYFIINGTEK----VILIQEQLS 194

Query: 128  MSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKL-YYLLNGSVRLGFWLQGKEYLLPV 186
             + V     ++  G           RK ++ V LK    +LN +V +          +P+
Sbjct: 195  KNRVIVEADEKTGGVQASVTSSTHERKSKTYVILKKDRIVLNHNVLV--------EPIPI 246

Query: 187  GIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQ 246
             IVLKAL   +D +I              E  A G  L  +   +   E     + T+ Q
Sbjct: 247  VIVLKALGGLSDYQIL-------------ELVAGGDALYQDDFLVNFDEATRAGVFTQQQ 293

Query: 247  CLQHIGEHFQ----------------PVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKF 290
             L++IG   +                PV +GL + +   +A   I D  F        K 
Sbjct: 294  ALEYIGLRVKMGGSKKGRSPNAPRRSPVEEGLDALTNLIIAHITIEDLDFY------PKA 347

Query: 291  NLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDE 350
              +  M++++     +  + D+ D + N+   L G L+++  +++ + ++   K      
Sbjct: 348  IYIAMMVRRVLMAAHNPKLIDDRDFVGNKRFELAGQLLSLLFEDQFKMFIASLK------ 401

Query: 351  IENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDL-----QQRAGY 405
                G    FF   N  +    +P   I +  + + +    A Q+G          RAG 
Sbjct: 402  ----GNMEYFFKKPN--RTSAYDPVGPISSQGQYITQGLNRAIQSGNWTVRRFNMNRAGV 455

Query: 406  TVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLN 464
            T    RL+++  +     +   + F   R  S  R L P  WG LC   TP+GE CGL+ 
Sbjct: 456  THVLSRLSYISALGMMTRI--SSQFEKTRKVSGPRALHPSQWGMLCTSDTPEGEACGLVK 513

Query: 465  HMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGP----PAVLSVL 520
            ++     + +  D          ++  I  ++ GV      P  V +G     P    + 
Sbjct: 514  NLALMTHITTNADE-------EPVKDCIFDLVPGVE-----PIRVFTGSEMHRPGSYIIH 561

Query: 521  LDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPK 580
            L+G    +  +   ++  A  R L+     + P      +V +     +  +++ T   +
Sbjct: 562  LNGTPFAL--TRHPKQFAARFRTLR-RRGHISP------FVSIHTNEHFSAIHIATDEGR 612

Query: 581  FVRPVRNIS-----LPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRN-AFPATHE---- 630
              RP   +      L  E  + ++L       F+ +   +  D    N A  A +E    
Sbjct: 613  ICRPYIIVKDGKSRLKPEHLRLLQLGKASFDDFLRLGVVEYLDVNEENDALIAMNEDEIT 672

Query: 631  ------EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
                  EI P  +L  VA L P+  HNQSPRN YQC M KQ +G        R D  LY 
Sbjct: 673  RATTHMEIEPFTILGAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYT 732

Query: 685  LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI 744
            L  PQ P+V T T      D+ P G NA V V++Y+GYD+EDA++LNK+S DRG    Q+
Sbjct: 733  LVYPQRPMVITKTIQLIHYDKLPAGQNATVVVMSYSGYDIEDALVLNKASCDRGFGRCQV 792

Query: 745  YQTETIDLSDDGNKVDRGQKLFRRNKDAK----SLHSVIDSDGLPYVGQMIHPGEPYCSI 800
            ++  T +L    N   R  +L    KD +    + H+ +D DGL  VG  I  GE    I
Sbjct: 793  FRKYTAELQQYAN--GRKDRLGGPQKDEEGRTIAKHACLDRDGLAIVGYQIRSGE--TMI 848

Query: 801  YDKT---TNSWRTNSRKGSES-------------VFVDYVAVDMKNSKNLPQKANIRFRH 844
              +T     S      +GS++              ++D V V   N++       ++ R 
Sbjct: 849  MKETPVDVTSTGIGGDRGSDAYVPAPVNYRINDPAYIDKVMV--SNTEKNTAIIKVQTRQ 906

Query: 845  TRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLES 904
            TR P +GDKFSSRHGQKGV   +    DMPFS  +G+ PD+I+NPH FPSRMT+  L E 
Sbjct: 907  TRRPELGDKFSSRHGQKGVVGIIVNQEDMPFSD-SGIVPDIIMNPHGFPSRMTVGKLFEC 965

Query: 905  VAAKGGSLHGK----FMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVE 960
            +  K   + G+    F DA                      V+E+G +L   GF++ G +
Sbjct: 966  LTGKAAVVAGRPDYGFGDAF-----------------RSHPVEEMGRVLIEHGFSWEGKD 1008

Query: 961  VLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRF 1020
               SG+ G      +F GP+YYQRL+HMV DK   RS G    +TRQP +GR R GG+R 
Sbjct: 1009 YFTSGITGNPHEAYLFNGPIYYQRLKHMVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRL 1068

Query: 1021 GEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPP 1080
            GEMERD L+A+GA+ LL +RL   SD    DVC  CG      F                
Sbjct: 1069 GEMERDCLIAYGASQLLLERLMISSDATQVDVCEACGLFGYKGF---------------- 1112

Query: 1081 ARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
                    C  CQ++  +  + MPY  + L  EL +MN+ + +QL D
Sbjct: 1113 --------CQTCQSTANVTQMTMPYAAKLLVQELISMNVGVRMQLED 1151


>gi|108710089|gb|ABF97884.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative,
            expressed [Oryza sativa Japonica Group]
 gi|125545063|gb|EAY91202.1| hypothetical protein OsI_12811 [Oryza sativa Indica Group]
          Length = 1222

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 317/1156 (27%), Positives = 502/1156 (43%), Gaps = 149/1156 (12%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPV--VRERFNF-----GQFPVMLKTRRCHLQGADS 90
             R   ++Y+  L  DV ++ +  G     V E   +     G+ P+ML++  C L     
Sbjct: 148  ARLRNLTYSAPLYVDVSYRVMKKGHDCEEVTETMEYPKVFIGKVPIMLRSSYCTLFQQSE 207

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V    ++ ++    + V   F+ R+         +R
Sbjct: 208  KDLTELGECPYDQGGYFIINGSEKV----LIAQEKMSTNHV-YVFKKRQPNKYAYVAEVR 262

Query: 151  CVRKDQSSVTLKLYYLL------NGSVRLGFWLQGKEYL---LPVGIVLKALVDTNDLEI 201
             + ++Q+     ++  +       G     +      Y+   +P+ IV +AL    D +I
Sbjct: 263  SMAENQNRPASSMFVRMLSRAGAKGGSSGQYIRATLPYIRADIPIIIVFRALGFVADKDI 322

Query: 202  FNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDG 261
              H+  CYD              + E ++  L E     +  +   L +IG+    V  G
Sbjct: 323  LEHI--CYD---------FSDTQMMELLRPSLEEA--FVIQNQQVALDYIGKRGATV--G 367

Query: 262  LQSESYYAVAETVIRDYIFVHLND----NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQ 317
            +  E     A+ +++  +  H+         K     +++ +L          D+ D   
Sbjct: 368  VTKEKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLMCALGRRAEDDRDHYG 427

Query: 318  NQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQ 377
            N+ + L G L+    +       R  +  +Q  + +NGK+       N++  ++   +K 
Sbjct: 428  NKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCV-DNGKE------VNLQFAIK---AKT 477

Query: 378  IGTSIETMLKTGRL--ATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
            I + ++  L TG    A Q G     RAG +    RL +   +S  R ++      G + 
Sbjct: 478  ITSGLKYSLATGNWGQANQAGT----RAGVSQVLNRLTYASTLSHLRRLNSPIGREG-KL 532

Query: 436  TSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV 495
               R+L    WG +CP  TP+G+ CGL+ ++     +                   IL  
Sbjct: 533  AKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYIT-----------VGSAANPILEF 581

Query: 496  LIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK----VSAASV 551
            L   G   +  ++  +  P    + ++G  VG+  + ++  +V  LRRL+    V+    
Sbjct: 582  LEEWG-TENFEEISPAVIPQAAKIFVNGCWVGIHRNPDL--LVKTLRRLRRQIDVNTEVG 638

Query: 552  IPDDLEVGYVPL--SLGGAYPGLYLFTS-----PPKFVRPVRNISLPSEESQN------I 598
            +  D+ +  + L    G     L++  +       + +R ++    P E   +      I
Sbjct: 639  VVRDIRLKELRLYTDYGRCSRPLFIVENQRLLIKKRHIRALQQRETPEEGWHDLVAKGFI 698

Query: 599  ELIGPFEQ----VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQ 652
            E I   E+    + M I    G       A+  T  H EIHP+ +L V A++ P+ DHNQ
Sbjct: 699  EYIDTEEEETTMISMTINDLIGARHNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQ 758

Query: 653  SPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNA 712
            SPRN YQ  M KQ MG  V   + R D   Y L  PQ P+V T         + P G NA
Sbjct: 759  SPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 818

Query: 713  IVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA 772
            IVA+  Y+GY+ ED++I+N+SS+DRG      +++   +    G  V   ++  R N++ 
Sbjct: 819  IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVK--EEFGRPNREN 876

Query: 773  K-----SLHSVIDSDGLPYVGQMIH------------PGEPYCSIYDKTTNSWRTNSRKG 815
                    +  +D DGL   G  +             P +       + T    + S + 
Sbjct: 877  TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIPQDDAQGQATRYTKRDHSTSLRH 936

Query: 816  SESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPF 875
            SES  VD V +   N+  L +   +R R  R P IGDKFSSRHGQKG     +   DMP+
Sbjct: 937  SESGMVDQVLL-TTNADGL-RFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 994

Query: 876  SGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGT 935
            + + G+ PD+I+NPHA PSRMTI  L+E +  K  +  GK  DATPF +           
Sbjct: 995  T-IEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT--------- 1044

Query: 936  DESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQV 995
                  VD + + L  CG+   G E +Y+G  G +LT  IF+GP YYQRL+HMV DK   
Sbjct: 1045 ------VDNISKALHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRLKHMVDDKIHS 1098

Query: 996  RSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSL 1055
            R  G +  +TRQP +GR R GG+RFGEMERD ++AHGAA+ L +RL   SD +   VC  
Sbjct: 1099 RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAFFLKERLFDQSDAYRVHVCEK 1158

Query: 1056 CGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELA 1115
            CG +  A                          C  C+    +  V +PY  + L  EL 
Sbjct: 1159 CGLIAIANL------------------KKNSFECRGCKNKTDIVQVHIPYACKLLFQELM 1200

Query: 1116 AMNIKITLQLGDGATA 1131
            AM I   +   D  T 
Sbjct: 1201 AMAIAPRMLTQDNKTG 1216


>gi|312079478|ref|XP_003142191.1| DNA-directed RNA polymerase II second largest subunit [Loa loa]
 gi|307762647|gb|EFO21881.1| DNA-directed RNA polymerase II subunit RPB2 [Loa loa]
          Length = 1171

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 319/1141 (27%), Positives = 508/1141 (44%), Gaps = 142/1141 (12%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSP---VVRERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+       G        E+   G+ P+ML++  C L     
Sbjct: 111  MPNEARLRNLTYSSPLYIDITKTMTRIGEEPKETKYEKVFVGKIPIMLRSSYCMLANMSD 170

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYF++NG E+V   +I  ++    ++   S +D +  YT K     
Sbjct: 171  RDLSELNECPLDPGGYFVINGSEKV---LIAQEKMATNTVYVFSMKDGK--YTYKTECRS 225

Query: 151  CVRKD-QSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  L  G         G + +         +PV IV +AL   +D +
Sbjct: 226  CLENSSRPTSTLWVNMLPRGGGGSKKSAMGPKIIAILPYIKQEIPVMIVFRALGFVSDHD 285

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +++           P + E VK  L E     +  +   L  IG   +    
Sbjct: 286  ILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RGAKP 330

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     A+ +++  +  H+  ++     K   L +M+ +L          D+ D +
Sbjct: 331  GVTKEQRIKYAKEILQKEMLPHVGISDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHM 390

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +    + L++ +   Q  I  NG   DF     +K  +      
Sbjct: 391  GNKRLDLAGPLLAFLFRALFRNLLKEVRLTAQKYINKNG---DFMLDLCVKTPL------ 441

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   +   L TG    Q     Q RAG +    RL +   +S  R  +      G +  
Sbjct: 442  -ITRGLAYSLATGNWGDQKKAH-QSRAGVSQVLNRLTYTATLSHLRRCNSPIGREG-KLA 498

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G+  GL+ ++         Y S G++ +       IL  L
Sbjct: 499  KPRQLHNTQWGMVCPAETPEGQAVGLVKNLALMA-----YISVGSLPE------PILEFL 547

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  +       + ++G  VG+    + E+++  L++L+      VS  S
Sbjct: 548  EEWSM-ENLEEVAPTAIADATKIFVNGAWVGI--HRDPEQLMTTLKKLRREMDIIVSEVS 604

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN---------IELI 601
            ++ D  +      +  G      L     K     ++I    + S           +ELI
Sbjct: 605  MVRDIRDREIRIYTDAGRVCRPLLIVENQKLALKRKHIDQLKDNSYTWSELVAGGVVELI 664

Query: 602  GPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQ 659
               E+  V + +   D   GG  + +  TH EIHP  +L V A++ P+ DHNQSPRN YQ
Sbjct: 665  DAMEEETVMLAMMPEDLKAGGYCDTY--THCEIHPAMILGVCASIIPFPDHNQSPRNTYQ 722

Query: 660  CQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAY 719
              M KQ MG        R D   + L  PQ P+V T +      +E P G NAIVA+L+Y
Sbjct: 723  SAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFNELPAGINAIVAILSY 782

Query: 720  TGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAK------ 773
            TGY+ ED++I+N+S +DRG+     Y++       + N  +  ++L  +    K      
Sbjct: 783  TGYNQEDSIIMNQSGIDRGLFRSVFYRSYR---DQEANLDNANEELIEKPTRDKCSGMRH 839

Query: 774  SLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGSESV 819
            SL+  +D DG+   G  +   +       S+ D   +   T  R          + SE+ 
Sbjct: 840  SLYDKLDEDGIISPGMRVSGDDVIIGKTISLPDTEDDLDATIKRYTKKDASTFLRSSETG 899

Query: 820  FVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVT 879
             VD V + +    N  +   IR R  R P IGDKF+SRHGQKG    ++   DMPF+   
Sbjct: 900  IVDQVMLTLNTDGN--KFVKIRVRSVRLPQIGDKFASRHGQKGTMGMMYRQEDMPFTN-E 956

Query: 880  GMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESK 939
            G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF ++V             
Sbjct: 957  GITPDIIINPHAVPSRMTIGHLIECLQGKLSANKGEIGDATPFNDTVN------------ 1004

Query: 940  SLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTG 999
              V ++  +L+  G++  G E++Y+G  G +LT ++F+GP YYQRL+HMV DK   R+ G
Sbjct: 1005 --VQKISNLLQEYGYHLRGNEIMYNGHTGRKLTIQVFLGPTYYQRLKHMVDDKIHSRARG 1062

Query: 1000 TMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSD-YHVADVCSLCGS 1058
             +  + RQP++GR R GG+RFGEMERD  ++HGAA  L +RL   SD YHV  +C+ CG 
Sbjct: 1063 PVQMMNRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYHVY-ICNNCGL 1121

Query: 1059 VLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMN 1118
            ++ A                          C AC+    +    +PY  + L  EL +M+
Sbjct: 1122 IVVANL------------------RTNSFECKACRNKTQVSAFRIPYACKLLFQELMSMS 1163

Query: 1119 I 1119
            I
Sbjct: 1164 I 1164


>gi|14591329|ref|NP_143407.1| DNA-directed RNA polymerase subunit B [Pyrococcus horikoshii OT3]
 gi|3257974|dbj|BAA30657.1| 1117aa long hypothetical DNA-directed RNA polymerase subunit B
            [Pyrococcus horikoshii OT3]
          Length = 1117

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 336/1205 (27%), Positives = 529/1205 (43%), Gaps = 212/1205 (17%)

Query: 15   LVRHHIESFDYMLDEGLSEMFDHCRQAK-------ISYTGKLMADVEFQ----------- 56
            LVR H++S++  ++ GL E+ D     K       + +    + + EFQ           
Sbjct: 27   LVRQHLDSYNAFIERGLQEVVDEFGGIKPDIPDFEVKFGKIRVGEPEFQEPHGQRKPLYP 86

Query: 57   --------------YLDAGSPVVRE------RFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
                          YL+   PV+R           G+ P+MLK++ C L G   ++L+ L
Sbjct: 87   MDARIRNLTYSAPLYLEM-IPVIRGIEQDPVEVRIGELPIMLKSKACRLYGLSDEELIKL 145

Query: 97   KEEAAEMGGYFILNGLERVFRSV--ILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRK 154
             E+  + GGYFI+NG ERV  S+  I P +    ++V     +R+E Y  K    R   +
Sbjct: 146  GEDPKDPGGYFIINGSERVIVSIEDIAPNR----TLVEKD--ERQEKYIAKVFSYRHGYR 199

Query: 155  DQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGI-----------VLKALVDTNDLEIFN 203
               +V  K                 K+ +L VGI           V++AL    D +I +
Sbjct: 200  ALVTVERK-----------------KDGILYVGIPNVPRPVKFVYVMRALGLERDKDIVD 242

Query: 204  HLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLS-LTTRLQCLQHIGEHFQPVIDGL 262
                           AVG+    E  +I+   ++D S +TT+ + L++IG+   P   G 
Sbjct: 243  ---------------AVGND--PEVQQILFDNLEDASDITTQQEALEYIGKLVAP---GQ 282

Query: 263  QSESYYAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQN 318
              E     AE VI + +  H+     D   K   L  M  K+  L       D+ D   N
Sbjct: 283  AREYRLKRAEYVIDNNLLPHMGVTPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDHYAN 342

Query: 319  QEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQI 378
            + + L G L+    +      ++  +  +    +  G+K+ F N+              I
Sbjct: 343  KRLRLAGDLLKDLFRVAFSQLIKDIQYQMTKTYQRRGEKYVFSNIHRF-----------I 391

Query: 379  GTSIETMLKTGRL--ATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
              SI   + T R+  A  TG     R G +   +R N++  +S  R V            
Sbjct: 392  RNSIRPDVLTERIEHALATGAWPGGRTGVSQLLDRTNYVSTLSHLRRVTSPLDREQPHFE 451

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
            + R L    WG +CP  TP+G  CGL+ ++    ++ +       +R++          L
Sbjct: 452  A-RDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEE-EVREY----------L 499

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSE--IEKVVAHLRRLKVSAASVIP- 553
            + +G++P     V+   P +  V L+G ++G +   +  +E++    R  K+S    +  
Sbjct: 500  MSLGIVPI---EVRRPSPELWRVYLNGVLIGTVEDGKALVERIKKDRRSGKISDIINVAY 556

Query: 554  -DDLEVGYVPLSLGGA-YPGLYLFTSPPKFVRP-VRNISLPSEESQNIELIGPFEQVFME 610
             +D++  YV    G    P + +    PK  +  V+ I     +  ++  +G  E +  E
Sbjct: 557  YEDVKEVYVNSDDGRVRRPLIIVENGVPKLTKEHVQAIKEGRLKWSDLVRMGVIEYLDAE 616

Query: 611  IRCPDGGDGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQC 660
                        NA+ A          TH E+ P  +L + A+L PY +HN +PRN Y  
Sbjct: 617  ---------EEENAYVAMWPWEVTKEHTHLELMPAAILGLPASLIPYPEHNAAPRNTYGA 667

Query: 661  QMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYT 720
             MAKQ++G      + R D + + L  PQ P+V +      G ++ P G N +VAVLAY 
Sbjct: 668  GMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYH 727

Query: 721  GYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVDRGQ--KLFRRNKDAKSLHS 777
            GY+MEDA+I+NK+S++RG+     ++T E  +    G + DR +      R    +  + 
Sbjct: 728  GYNMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDRFEIPAPTVRGYRGEKYYR 787

Query: 778  VIDSDGLPY-----------VGQMIHP------GEPYCSIYDKTTNSWRTNSRKGSESVF 820
             +D DGL +           +G+   P      G    S+ ++   S    + + SE   
Sbjct: 788  HLDEDGLIFPESKVEGKDVLIGRTSPPRFLEERGLGAVSLQERRETS---VAVRPSEKGI 844

Query: 821  VDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTG 880
            VD V +    + +  +   +  R  R P IGDKF+SRHGQKGV   + P  DMP++  +G
Sbjct: 845  VDKVII--TETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTE-SG 901

Query: 881  MRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKS 940
            + PDLI+NPH  PSRMT+  LLE++  K  +L G+ +D T F    ++            
Sbjct: 902  IVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPEEKLRKELE----- 956

Query: 941  LVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGT 1000
                        GF + G E++Y G+ G     +IFIG +YYQRL HMV+DK   RS G 
Sbjct: 957  ----------ELGFKHTGREIMYDGITGKRFEADIFIGIIYYQRLHHMVADKIHARSRGP 1006

Query: 1001 MDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVL 1060
            +  +T+QP +GR R GG+RFGEMERD L+ HGAA LL +RL   SD     VC  CG + 
Sbjct: 1007 VQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIA 1066

Query: 1061 TATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIK 1120
                I  ++R               KV C  C   + +  V M Y F+ L  EL AM I+
Sbjct: 1067 ----IEDKRR--------------HKVYCPVCGEEERISKVEMSYAFKLLLDELKAMVIR 1108

Query: 1121 ITLQL 1125
              L L
Sbjct: 1109 PKLNL 1113


>gi|324120606|dbj|BAJ78694.1| RNA polymerase II second largest subunit [Isolepisma japonica]
          Length = 1176

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 317/1142 (27%), Positives = 507/1142 (44%), Gaps = 138/1142 (12%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   +    ++   G+ P+ML++  C L G   
Sbjct: 109  MPNEARLRNLTYSAPLYVDITKTVIKEGEDPIETQHQKTFIGKIPIMLRSTYCLLNGLTD 168

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  Y  KA +  
Sbjct: 169  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKYAY--KAEIRS 223

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  +  G   +     G+  +         +P+ IV +AL    D +
Sbjct: 224  CLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIVAILPYIKQEIPIMIVFRALGFVADRD 283

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +D+           P + E VK  L E     +  +   L  IG   +    
Sbjct: 284  ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RGARP 328

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     A  +++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 329  GVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   ++ +++ +   Q  I + GK F+   LA IK       +K
Sbjct: 389  GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFI-DRGKDFNL-ELA-IK-------TK 438

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   ++  L TG    Q    L  RAG +    RL F   +S  R V+      G +  
Sbjct: 439  IITDGLKYSLATGNWGDQKKAHLA-RAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 496

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G   GL+ ++     ++                + IL  L
Sbjct: 497  KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  S       + ++G  VG+    + E+++A LR+L+      VS  S
Sbjct: 546  EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVSEVS 602

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
            ++ D  +      +  G      L     + +   R+I +  E   N            +
Sbjct: 603  MVRDIRDREIRIYTDAGRICRPLLIVDNGRLLLKKRHIDMLKEREYNNYGWQVLVASGVV 662

Query: 599  ELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQSPR 655
            E I   E+   M    P+     +  A+  T  H EIHP  +L V A++ P+ DHNQSPR
Sbjct: 663  EYIDTLEEETVMIAMSPEDLRQDKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPR 722

Query: 656  NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
            N YQ  M KQ MG  +     R D   + L  P  P+V T +       E P G N+IVA
Sbjct: 723  NTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVA 782

Query: 716  VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT----ETIDLSDDGNKVDRGQKLFRRNKD 771
            +  YTGY+ ED++I+N S+V+RG      +++    E+  + D   + ++  +   +   
Sbjct: 783  IACYTGYNQEDSVIMNASAVERGFFRSVFFRSYKDAESKRICDQEEQFEKPTRTTCQGM- 841

Query: 772  AKSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGSE 817
              +++  +D DG+   G  +   +       ++ D       T  R          + SE
Sbjct: 842  RNAIYDKLDDDGIIAPGIRVSGDDVVIGKTITLPDNDDELEGTTKRYTKRDASTFLRNSE 901

Query: 818  SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
            +  VD V + + NS+   +   IR R  R P IGDKF+SRHGQKG C   +   DMPF+ 
Sbjct: 902  TGIVDQVMITL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT- 958

Query: 878  VTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDE 937
              G+ PD+IINPHA PSRMTI  L+E +  K  S  G+  DATPF ++V           
Sbjct: 959  CEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSSNKGEIGDATPFNDAVN---------- 1008

Query: 938  SKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRS 997
                V ++  +L+  G+   G EV+Y+G  G ++  +IF+GP YYQRL+HMV DK   R+
Sbjct: 1009 ----VQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHSRA 1064

Query: 998  TGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCG 1057
             G +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +RL   SD +   VC+ CG
Sbjct: 1065 RGPLQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCG 1124

Query: 1058 SVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAM 1117
             +  A   +                      C  C+    +  V +PY  + L  EL +M
Sbjct: 1125 LIAIANMRN------------------STFECKGCKNKTQISQVRLPYAAKLLFQELMSM 1166

Query: 1118 NI 1119
            NI
Sbjct: 1167 NI 1168


>gi|339250694|ref|XP_003374332.1| DNA-directed RNA polymerase II subunit RPB2 [Trichinella spiralis]
 gi|316969378|gb|EFV53485.1| DNA-directed RNA polymerase II subunit RPB2 [Trichinella spiralis]
          Length = 1190

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 319/1154 (27%), Positives = 512/1154 (44%), Gaps = 166/1154 (14%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGS-PVVR--ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+      +   P++   E+   G+ P+ML++  C L     
Sbjct: 129  MPNEARLRNLTYSAPLYVDITKTIAKSNEEPLIAKYEKVFIGKIPIMLRSTYCLLNRLSE 188

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  +  KA    
Sbjct: 189  RDLTDLNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSLKDNKFAF--KAECRS 243

Query: 151  CVR---KDQSSVTLKLYYLL--NGSVRLGFWLQGKEYL---------LPVGIVLKALVDT 196
            C+    +  S++ + +Y     +G+      L G+  +         LPV +V +AL   
Sbjct: 244  CLESSSRPTSTLWVNMYARGGGHGAANTKKQLMGQRIVVNLPYVKQELPVIVVFRALGFV 303

Query: 197  NDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAE---VQDLSLTTRLQCLQHIGE 253
            +D +I  H+   +D+             + E VK  L E   +Q+ S+      L  IG 
Sbjct: 304  SDRDILEHIVYDFDDAE-----------MMEMVKPSLDEAFVIQEQSV-----ALNFIGS 347

Query: 254  H-FQPVIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTS 308
               QP   G+  E     A  +++     H+  ++     K   L +M+ +L        
Sbjct: 348  RGVQP---GITREKRVKYAREILQKETLPHVGISDFCETKKAYFLGYMVHRLLLAAMGRR 404

Query: 309  VSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKK 368
              D+ D   N+ + L G L         ++ L++ K + Q  I   G     FNL    +
Sbjct: 405  ELDDRDHYGNKRLDLAGPL------GLFKNLLKEVKMVAQRYINKTGD----FNLELCVR 454

Query: 369  VMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGA 428
                  +  +   ++  L TG    Q     Q RAG +    RL +   +S  R ++   
Sbjct: 455  ------TGILTKGLQYSLATGNWGDQKKAH-QTRAGVSQVLNRLTYAATLSHLRRLNSPI 507

Query: 429  SFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKM 488
               G +    R+L    WG +CP  TP+G+  GL+ ++     ++               
Sbjct: 508  GREG-KLAKPRQLHNTLWGMICPAETPEGQAVGLVKNLALMAYIS-----------VGSQ 555

Query: 489  RTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSA 548
            +  IL  L    M  +L ++  S   A   + ++G  VG+    E ++++A LR+L+   
Sbjct: 556  QEPILEFLEEWSM-ETLEEVAPSAISATTKIFVNGAWVGI--HREPQQLMATLRKLRRQM 612

Query: 549  ASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP---------------VRNISLPSE 593
                  D+ V  V +        + ++T   +  RP               + N+   +E
Sbjct: 613  ------DIVVSEVSMVRDIRDREIRIYTDAGRICRPLLIVEDQRLLLKKNHIENLKRRNE 666

Query: 594  ESQN----------IELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVV 641
             + +          +E I   E+  + + +   D  D G       TH EIHP+ +L V 
Sbjct: 667  SNGHGWSELVANSIVEYIDTMEEETIMLAMTPDDLQDRGVGYCDTYTHCEIHPSMILGVC 726

Query: 642  ANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKY 701
            A++ P+ DHNQSPRN YQ  M KQ MG        R D   + L  PQ P+V T +    
Sbjct: 727  ASIIPFPDHNQSPRNTYQSAMGKQAMGIYTTNFHVRMDTLAHVLWYPQKPLVTTRSMEYL 786

Query: 702  GIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT----ETIDLSDDGN 757
              +E P G N+IVA+L+YTGY+ ED++I+N SS+DRGM     Y++    E+   + +  
Sbjct: 787  RFNELPAGINSIVAILSYTGYNQEDSVIMNSSSIDRGMFRSIFYRSYRDQESSREARNEE 846

Query: 758  KVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYC--SIYDKTTNSWRTNSR-- 813
             +++  +   +       H  +D DG+   G  +   +     +I  + T+   T  R  
Sbjct: 847  TIEKPTRQICQGMRNAVYHK-LDDDGIVSPGTRVSGDDVIIGKTIMLEDTDDSSTTKRSS 905

Query: 814  --------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCS 865
                    + SE+  VD V + +    N  +   +R R  R P IGDKF+SRHGQKG   
Sbjct: 906  KKDASTFLRASETGIVDQVMLSVNADGN--KFVKVRVRSIRIPQIGDKFASRHGQKGTIG 963

Query: 866  QLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANS 925
             ++   DMPF+   G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF +S
Sbjct: 964  MIYRQEDMPFT-CEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANRGEIGDATPFNDS 1022

Query: 926  VKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRL 985
            V               V ++  +L+  G++  G EV+YSG  G +L  ++FIGP YYQRL
Sbjct: 1023 VN--------------VQKVSSLLQEYGYHLRGNEVMYSGFTGRKLNTQVFIGPTYYQRL 1068

Query: 986  RHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCS 1045
            +HMV DK   R+ G +  + RQP++GR R GG+RFGEMERD  +AHGAA+ L +RL   S
Sbjct: 1069 KHMVDDKIHSRARGPLQMMARQPMEGRSRDGGLRFGEMERDCQIAHGAAHFLKERLFEVS 1128

Query: 1046 DYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPY 1105
            D +   VC +CG +  A                          C  C+    +  V +PY
Sbjct: 1129 DPYTVYVCKICGIIAIAN------------------SRTGHYECRTCRNKTKISRVNIPY 1170

Query: 1106 VFRYLAAELAAMNI 1119
              + L  EL +M I
Sbjct: 1171 ACKLLFQELTSMCI 1184


>gi|324120630|dbj|BAJ78706.1| RNA polymerase II second largest subunit [Oyamia lugubris]
          Length = 1175

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 322/1155 (27%), Positives = 511/1155 (44%), Gaps = 164/1155 (14%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   +    ++   G+ P+ML++  C L G   
Sbjct: 109  MPNEARLRNLTYSAPLYVDITKTIVKDGEEPIETQHQKTFIGKIPIMLRSTYCLLSGLTD 168

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  Y  KA +  
Sbjct: 169  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKFAY--KAEIRS 223

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  +  G   +     G+  +         +P+ IV +AL    D +
Sbjct: 224  CLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 283

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +D+           P + E VK  L E     +  +   L  IG   +    
Sbjct: 284  ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RGARP 328

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     A  +++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 329  GVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   ++ +++ +   Q  I + GK F+   LA IK       ++
Sbjct: 389  GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFI-DRGKDFNL-ELA-IK-------TR 438

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   +   L TG    Q     Q RAG +    RL F   +S  R V+      G +  
Sbjct: 439  IITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 496

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G   GL+ ++     ++                + IL  L
Sbjct: 497  KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  S       + ++G  VG+    + E+++A LR+L+      VS  S
Sbjct: 546  EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVSEVS 602

Query: 551  VIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------------RNISLPSEESQ 596
            +I D  D E+               ++T   +  RP+            R++ +  E   
Sbjct: 603  MIRDIRDREI--------------RIYTDAGRICRPLLIVEGGNLLLKKRHVDMLKEREY 648

Query: 597  N------------IELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVV 641
            N            +E I   E+   M    PD     +  A+  T  H EIHP  +L V 
Sbjct: 649  NNFGWQVLVASGVVEYIDTLEEETVMIAMSPDDLRQEKEYAYCTTYTHCEIHPAMILGVC 708

Query: 642  ANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKY 701
            A++ P+ DHNQSPRN YQ  M KQ MG  +     R D   + L  P  P+V T +    
Sbjct: 709  ASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYL 768

Query: 702  GIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVD 760
               E P G N+IVA+L YTGY+ ED++ILN S+V+RG      Y++ +  +    G++ +
Sbjct: 769  RFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDAESKRIGDQEE 828

Query: 761  RGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR- 813
            + +K  R        +L+  +D DG+   G  +   +       ++ D       T  R 
Sbjct: 829  QFEKPTRATCQGMRNALYDKLDDDGIIAPGIRVSGDDVVIGKTITLPDNEDELEGTTKRY 888

Query: 814  ---------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVC 864
                     + SE+  VD V + + NS+   +   IR R  R P IGDKF+SRHGQKG C
Sbjct: 889  TKRDASTFLRNSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTC 946

Query: 865  SQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFAN 924
               +   DM F+   G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF +
Sbjct: 947  GIQYRQEDMAFTA-EGLTPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFND 1005

Query: 925  SVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQR 984
            +V               V ++  +L+  G+   G EV+Y+G  G ++  ++F+GP YYQR
Sbjct: 1006 AVN--------------VQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQVFLGPTYYQR 1051

Query: 985  LRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTC 1044
            L+HMV DK   R+ G +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +RL   
Sbjct: 1052 LKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEV 1111

Query: 1045 SDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMP 1104
            SD +   VC+ CG +  A   +                      C  C+    +  V +P
Sbjct: 1112 SDPYRIHVCNFCGLIAIANLRN------------------NTFECKGCKNKTQISQVRLP 1153

Query: 1105 YVFRYLAAELAAMNI 1119
            Y  + L  EL +MNI
Sbjct: 1154 YAAKLLFQELMSMNI 1168


>gi|222625458|gb|EEE59590.1| hypothetical protein OsJ_11898 [Oryza sativa Japonica Group]
          Length = 1218

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 317/1156 (27%), Positives = 502/1156 (43%), Gaps = 149/1156 (12%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPV--VRERFNF-----GQFPVMLKTRRCHLQGADS 90
             R   ++Y+  L  DV ++ +  G     V E   +     G+ P+ML++  C L     
Sbjct: 144  ARLRNLTYSAPLYVDVSYRVMKKGHDCEEVTETMEYPKVFIGKVPIMLRSSYCTLFQQSE 203

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V    ++ ++    + V   F+ R+         +R
Sbjct: 204  KDLTELGECPYDQGGYFIINGSEKV----LIAQEKMSTNHV-YVFKKRQPNKYAYVAEVR 258

Query: 151  CVRKDQSSVTLKLYYLL------NGSVRLGFWLQGKEYL---LPVGIVLKALVDTNDLEI 201
             + ++Q+     ++  +       G     +      Y+   +P+ IV +AL    D +I
Sbjct: 259  SMAENQNRPASSMFVRMLSRAGAKGGSSGQYIRATLPYIRADIPIIIVFRALGFVADKDI 318

Query: 202  FNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDG 261
              H+  CYD              + E ++  L E     +  +   L +IG+    V  G
Sbjct: 319  LEHI--CYD---------FSDTQMMELLRPSLEEA--FVIQNQQVALDYIGKRGATV--G 363

Query: 262  LQSESYYAVAETVIRDYIFVHLND----NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQ 317
            +  E     A+ +++  +  H+         K     +++ +L          D+ D   
Sbjct: 364  VTKEKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLMCALGRRAEDDRDHYG 423

Query: 318  NQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQ 377
            N+ + L G L+    +       R  +  +Q  + +NGK+       N++  ++   +K 
Sbjct: 424  NKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCV-DNGKE------VNLQFAIK---AKT 473

Query: 378  IGTSIETMLKTGRL--ATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
            I + ++  L TG    A Q G     RAG +    RL +   +S  R ++      G + 
Sbjct: 474  ITSGLKYSLATGNWGQANQAGT----RAGVSQVLNRLTYASTLSHLRRLNSPIGREG-KL 528

Query: 436  TSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV 495
               R+L    WG +CP  TP+G+ CGL+ ++     +                   IL  
Sbjct: 529  AKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYIT-----------VGSAANPILEF 577

Query: 496  LIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK----VSAASV 551
            L   G   +  ++  +  P    + ++G  VG+  + ++  +V  LRRL+    V+    
Sbjct: 578  LEEWG-TENFEEISPAVIPQAAKIFVNGCWVGIHRNPDL--LVKTLRRLRRQIDVNTEVG 634

Query: 552  IPDDLEVGYVPL--SLGGAYPGLYLFTS-----PPKFVRPVRNISLPSEESQN------I 598
            +  D+ +  + L    G     L++  +       + +R ++    P E   +      I
Sbjct: 635  VVRDIRLKELRLYTDYGRCSRPLFIVENQRLLIKKRHIRALQQRETPEEGWHDLVAKGFI 694

Query: 599  ELIGPFEQ----VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQ 652
            E I   E+    + M I    G       A+  T  H EIHP+ +L V A++ P+ DHNQ
Sbjct: 695  EYIDTEEEETTMISMTINDLIGARHNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQ 754

Query: 653  SPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNA 712
            SPRN YQ  M KQ MG  V   + R D   Y L  PQ P+V T         + P G NA
Sbjct: 755  SPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 814

Query: 713  IVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA 772
            IVA+  Y+GY+ ED++I+N+SS+DRG      +++   +    G  V   ++  R N++ 
Sbjct: 815  IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVK--EEFGRPNREN 872

Query: 773  K-----SLHSVIDSDGLPYVGQMIH------------PGEPYCSIYDKTTNSWRTNSRKG 815
                    +  +D DGL   G  +             P +       + T    + S + 
Sbjct: 873  TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIPQDDAQGQATRYTKRDHSTSLRH 932

Query: 816  SESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPF 875
            SES  VD V +   N+  L +   +R R  R P IGDKFSSRHGQKG     +   DMP+
Sbjct: 933  SESGMVDQVLL-TTNADGL-RFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 990

Query: 876  SGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGT 935
            + + G+ PD+I+NPHA PSRMTI  L+E +  K  +  GK  DATPF +           
Sbjct: 991  T-IEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT--------- 1040

Query: 936  DESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQV 995
                  VD + + L  CG+   G E +Y+G  G +LT  IF+GP YYQRL+HMV DK   
Sbjct: 1041 ------VDNISKALHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRLKHMVDDKIHS 1094

Query: 996  RSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSL 1055
            R  G +  +TRQP +GR R GG+RFGEMERD ++AHGAA+ L +RL   SD +   VC  
Sbjct: 1095 RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAFFLKERLFDQSDAYRVHVCEK 1154

Query: 1056 CGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELA 1115
            CG +  A                          C  C+    +  V +PY  + L  EL 
Sbjct: 1155 CGLIAIANL------------------KKNSFECRGCKNKTDIVQVHIPYACKLLFQELM 1196

Query: 1116 AMNIKITLQLGDGATA 1131
            AM I   +   D  T 
Sbjct: 1197 AMAIAPRMLTQDNKTG 1212


>gi|194378878|dbj|BAG57990.1| unnamed protein product [Homo sapiens]
          Length = 1099

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 323/1143 (28%), Positives = 510/1143 (44%), Gaps = 141/1143 (12%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   ++   ++   G+ P+ML++  C L G   
Sbjct: 34   MPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 93

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   + +D +  YT +     
Sbjct: 94   RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGECR--S 148

Query: 151  CVRKD-QSSVTLKLYYLLNGSV---------RLGFWLQGKEYLLPVGIVLKALVDTNDLE 200
            C+    + + T+ +  L  G           R+   L   +  +P+ IV +AL   +D +
Sbjct: 149  CLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRD 208

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +++           P + E VK  L E     +  +   L  IG   +    
Sbjct: 209  ILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAKP 253

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     A+ V++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 254  GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 313

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   ++ L++ +   Q  I + GK F+   LA IK       ++
Sbjct: 314  GNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFI-DRGKDFNL-ELA-IK-------TR 363

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   ++  L TG    Q     Q RAG +    RL F   +S  R ++      G +  
Sbjct: 364  IISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLA 421

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G   GL+ ++     ++                + IL  L
Sbjct: 422  KPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEFL 470

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  +       + ++G  VG+    + E+++  LR+L+      VS  S
Sbjct: 471  EEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEVS 527

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
            +I D  E      +  G      L     K +   R+I    E   N            +
Sbjct: 528  MIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVV 587

Query: 599  ELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656
            E I   E+  V + +   D  +         TH EIHP+ +L V A++ P+ DHNQSPRN
Sbjct: 588  EYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRN 647

Query: 657  MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
             YQ  M KQ MG  +     R D   + L  PQ P+V T +       E P G N+IVA+
Sbjct: 648  TYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAI 707

Query: 717  LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA---- 772
             +YTGY+ ED++I+N+S+VDR       Y++     S  G   D+ +   +  ++     
Sbjct: 708  ASYTGYNQEDSVIMNRSAVDRSFFRSVFYRSYKEQESKKG--FDQEEVFEKPTRETCQGM 765

Query: 773  -KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGSE 817
              +++  +D DGL   G  +   +       ++ +       TN R          + SE
Sbjct: 766  RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSE 825

Query: 818  SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
            +  VD V V +       +   IR R  R P IGDKF+SRHGQKG C   +   DMPF+ 
Sbjct: 826  TGIVDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT- 882

Query: 878  VTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDE 937
              G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF ++V           
Sbjct: 883  CEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVN---------- 932

Query: 938  SKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRS 997
                V ++  +L   G++  G EVLY+G  G ++T +IFIGP YYQRL+HMV DK   R+
Sbjct: 933  ----VQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRA 988

Query: 998  TGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCG 1057
             G +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +RL   SD +   VC+LCG
Sbjct: 989  RGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCG 1048

Query: 1058 SVLTA-TFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAA 1116
             +  A T  H  +                   C  C+    +  V MPY  + L  EL +
Sbjct: 1049 IMAIANTRTHTYE-------------------CRGCRNKTQISLVRMPYACKLLFQELMS 1089

Query: 1117 MNI 1119
            M+I
Sbjct: 1090 MSI 1092


>gi|324120674|dbj|BAJ78728.1| RNA polymerase II second largest subunit [Papilio polytes]
          Length = 1176

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 324/1143 (28%), Positives = 511/1143 (44%), Gaps = 140/1143 (12%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +      +    ++   G+ P+ML++  C L     
Sbjct: 109  MPNEARLRNLTYSAPLYVDITKTIVKENEEPIETQHQKIFIGKIPIMLRSTYCLLSNLTD 168

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  Y  K  +  
Sbjct: 169  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKYAY--KTEIRS 223

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  +  G   +     G+  +         +P+ IV +AL    D +
Sbjct: 224  CLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAIVPYIKQEIPIMIVFRALGFVADRD 283

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +D+           P + E VK  L E     +  +   L  IG   +    
Sbjct: 284  ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RGARP 328

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     A  +++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 329  GVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   ++ L++ +   Q  I + GK F+   LA IK       +K
Sbjct: 389  GNKRLDLAGPLLAFLFRGLFKNLLKEVRMYAQKFI-DRGKDFNL-ELA-IK-------TK 438

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   +   L TG    Q     Q RAG +    RL F   +S  R V+      G +  
Sbjct: 439  IITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 496

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G   GL+ ++     ++                + IL  L
Sbjct: 497  KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  S       + ++G  VG+    + E+++A LR+L+      VS  S
Sbjct: 546  EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVSEVS 602

Query: 551  VIPD--DLEV------GYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN----- 597
            +I D  D E+      G +   L     G  L     K +  ++     +   QN     
Sbjct: 603  MIRDIRDREIRIYTDAGRICRPLLIVENGALLLKK--KHIDHLKERDYNNYGWQNLVASG 660

Query: 598  -IELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQS 653
             +E I   E+   M    PD     +  A+ +T  H EIHP  +L V A++ P+ DHNQS
Sbjct: 661  VVEYIDTLEEETVMIAMSPDDLAQVKEYAYCSTYTHCEIHPAMILGVCASIIPFPDHNQS 720

Query: 654  PRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAI 713
            PRN YQ  M KQ MG  +     R D   + L  P  P+V T +       E P G N+I
Sbjct: 721  PRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSI 780

Query: 714  VAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD-GNKVDRGQKLFRRNKDA 772
            VA+L YTGY+ ED++ILN S+V+RG      Y++     S   G++ ++ +K  R+    
Sbjct: 781  VAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKRLGDQEEQFEKPTRQTCQG 840

Query: 773  --KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSR---KGS 816
               +L+  +D DG+             +G+ I   E    +   T    + ++    + S
Sbjct: 841  MRNALYDKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELEGTTRRYTKRDASTFLRNS 900

Query: 817  ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS 876
            E+  VD V V +  ++   +   IR R  R P IGDKF+SRHGQKG C   +   DMPF+
Sbjct: 901  ETGIVDQVMVTL--NREGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT 958

Query: 877  GVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTD 936
               G+ PD+IINPHA PSRMTI  L+E +  K  S  G+  DATPF ++V          
Sbjct: 959  -CEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVN--------- 1008

Query: 937  ESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVR 996
                 V ++  +L+  G++  G EV+Y+G  G ++  ++F+GP YYQRL+HMV DK   R
Sbjct: 1009 -----VQKISSLLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSR 1063

Query: 997  STGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLC 1056
            + G +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +RL   SD +   VC+ C
Sbjct: 1064 ARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFC 1123

Query: 1057 GSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAA 1116
            G +  A   +                      C  C+    +  V +PY  + L  EL +
Sbjct: 1124 GLIAIANLRN------------------NTFECKGCKNKTQISQVRLPYAAKLLFQELMS 1165

Query: 1117 MNI 1119
            MNI
Sbjct: 1166 MNI 1168


>gi|443726751|gb|ELU13810.1| hypothetical protein CAPTEDRAFT_172112 [Capitella teleta]
          Length = 1174

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 322/1149 (28%), Positives = 512/1149 (44%), Gaps = 155/1149 (13%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGS-PV--VRERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G  P+  + ++   G+ P+ML++  C L G   
Sbjct: 111  MPNEARLRNLTYSAPLYVDITKTLIKEGDDPIEALSQKTFVGKVPIMLRSTYCLLNGLTD 170

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V     L  Q    +     F  +   Y  K  +  
Sbjct: 171  RDLTELNECPLDPGGYFIINGSEKV-----LIAQEKMATNTVYVFSQKESKYAYKTEIRS 225

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  +  G   +     G+  +         +PV IV +AL   +D +
Sbjct: 226  CLEHSSRPTSTLWINMMARGGHGVRKNAIGQRIIAILPYIRQEIPVIIVFRALGFVSDRD 285

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAE---VQDLSLTTRLQCLQHIGEHFQP 257
            I  H+   +D+           P + E VK  L E   VQ+ ++      L  IG   + 
Sbjct: 286  ILEHIIYDFDD-----------PEMMEMVKPSLDEAFVVQEQNVA-----LNFIGA--RG 327

Query: 258  VIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNP 313
               G+  E     A+ +++  +  H+  ++     K   L +++ +L          D+ 
Sbjct: 328  ARPGVTKEKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYIVHRLLLAALGRRECDDR 387

Query: 314  DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKN 373
            D   N+ + L G L+    +    + L K  +L   +  + GK F      N++  +   
Sbjct: 388  DHYGNKRLDLAGPLLAFLFRGLFRN-LTKEVRLFSQKFIDQGKDF------NLELAIR-- 438

Query: 374  PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
             ++ I   ++  L TG    Q     Q RAG +    RL F+  +S  R ++      G 
Sbjct: 439  -TRTITDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFVSTLSHLRRLNSPVGRDG- 495

Query: 434  RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
            +    R+L    WG +CP  TP+G   GL+ ++     ++                + IL
Sbjct: 496  KLARPRQLHNTQWGMICPAETPEGSCVGLVKNLALMAYIS-----------VGSQPSPIL 544

Query: 494  RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VS 547
              L    M  +L ++  S       + ++G  VG+    + E+++  L++L+      VS
Sbjct: 545  EFLEEWSM-ENLEEIAPSAIQDATKIFVNGCWVGI--HRDPEQLMNTLKKLRRQMDIIVS 601

Query: 548  AASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN---------- 597
              S++ D  +      +  G      L     K +   R+I L  E   N          
Sbjct: 602  EVSMVRDISDREIRIYTDAGRICRPLLIVENQKLLLKKRHIDLLKEREYNNYGWQDLVAS 661

Query: 598  --IELIGPFEQ-VFMEIRCPDG-GDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQS 653
              +E I   E+   M    PD   + G  +++  TH EIHP+ +L V A++ P+ DHNQS
Sbjct: 662  GVVEYIDTLEEETIMLSMSPDQLQESGYCSSY--THCEIHPSMILGVCASIIPFPDHNQS 719

Query: 654  PRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAI 713
            PRN YQ  M KQ MG  +     R D   + L  PQ P+V T +       E P G NAI
Sbjct: 720  PRNTYQSAMGKQAMGVYITNYHVRMDTLAHVLFYPQKPLVTTRSMEYLRFRELPAGINAI 779

Query: 714  VAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAK 773
            VA+ +YTGY+ ED++ILN+ +VDRG      Y++     S  G  +D+ ++LF R     
Sbjct: 780  VAIASYTGYNQEDSVILNEGAVDRGFFRSVFYRSYKDSESKKG--LDQ-EELFERPDPNH 836

Query: 774  ------SLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT-----------TNSWRTNSR--- 813
                  +++  +D DG+   G  +   +    +  KT             + R   R   
Sbjct: 837  VQGMRMAVYDKLDDDGIIAPGTRVSGDD---VLIGKTLTLPENEDELDAQAKRFTKRDCS 893

Query: 814  ---KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPD 870
               + SE+  +D V V +       +   IR R  + P IGDKF+SRHGQKG C   +  
Sbjct: 894  VFMRRSETGIIDQVMVTINQEGY--KFCKIRVRTVKTPQIGDKFASRHGQKGTCGIRYRQ 951

Query: 871  IDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTN 930
             DMPF+   G+ PD+IINPHA PSRMT+  L+E +  K  +  G+  DATPF ++V    
Sbjct: 952  EDMPFT-CEGITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVN--- 1007

Query: 931  GDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVS 990
                       V ++ ++L+  G++  G EVL++G  G +L  +IFIGP YYQRL+HMV 
Sbjct: 1008 -----------VRKISDLLQDYGYHLRGNEVLFNGHTGRKLNAQIFIGPTYYQRLKHMVD 1056

Query: 991  DKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVA 1050
            DK   R+ G +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +RL   SD +  
Sbjct: 1057 DKIHSRARGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLKERLFEISDPYRV 1116

Query: 1051 DVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYL 1110
             VC++CG +  A   +                      C  C+    +  V MPY  + L
Sbjct: 1117 HVCNICGLIAIANLRN------------------NTFECRGCKNKTQISQVRMPYACKLL 1158

Query: 1111 AAELAAMNI 1119
              EL +M+I
Sbjct: 1159 FQELMSMSI 1167


>gi|406699010|gb|EKD02230.1| DNA-directed RNA polymerase [Trichosporon asahii var. asahii CBS
            8904]
          Length = 941

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 290/985 (29%), Positives = 448/985 (45%), Gaps = 130/985 (13%)

Query: 184  LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTT 243
            +P+ I LKA+  T+D EI   L C  DEKY++  G            + L E   L + T
Sbjct: 44   IPIVIALKAMGVTSDKEIL-QLVCGPDEKYQEAFG------------MSLEEAARLRVYT 90

Query: 244  RLQCLQHIGEHFQPVID---------------GLQSESYYAVAETVIRDYIFVHLNDNND 288
            R + L+ IG    P  +                +Q+ +   +    +RD  F        
Sbjct: 91   RREALEWIGARVSPTQEKEDRSLGHKLTPTDMAMQALAAMVLGHVPVRDMNF------RP 144

Query: 289  KFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQ 348
            K   L  M +++ + +   ++ D+ D + N+ + L G L+++  ++  + +    KK + 
Sbjct: 145  KAIYLATMSRRVLAAMLDENMVDDRDYVGNKRLELAGQLLSLLFEDSFKTFNSDLKKRMD 204

Query: 349  DEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQ 408
              +E   +   F    +   ++       I ++    + TG  + +      +RAG T  
Sbjct: 205  KILEKKTRAGPF----DASTLVRTGGGDIITSAFVRSISTGNWSLKRFH--VERAGVTHV 258

Query: 409  AERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMT 467
              RL+F+  +     +   + F   R  S  R L P  WG LCP  TP+GE CGL+ ++ 
Sbjct: 259  LSRLSFIAALGMMTRIT--SQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLA 316

Query: 468  STCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVG 527
                + +       I+    +    + +  G        +L + G   V  V ++G ++G
Sbjct: 317  LMTHITTDVPEDPLIKLAFVLGAEDISLATG-------NELYRDG---VHLVQVNGNLIG 366

Query: 528  VIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRN 587
            V  ++   K V   R+L+ S  +         +V + +      +Y+ +   +  RP+  
Sbjct: 367  V--TALPRKFVRTFRKLRRSGRTS-------EFVSIYINHHQRVIYIASDGGRICRPLII 417

Query: 588  IS--LPSEESQNIELIGPFEQVF---MEIRCPDGGDGGRRN-AFPA----------THEE 631
            +    P   S++++L+   +  F   +     +  D    N +F A          TH E
Sbjct: 418  VENGRPRVTSEHMQLLKAGKVTFDHFLRSGLVEYLDVNEENDSFIACYESEITEDTTHLE 477

Query: 632  IHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTP 691
            I P  +L  VA L PY  HNQSPRN YQC M KQ +G        R D  LY +  PQ P
Sbjct: 478  IEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLNRIDTLLYLMTYPQQP 537

Query: 692  IVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETID 751
            +V+T T    G D  P G NA VAV++Y+GYD+EDA+I+N++S DRG     + + +TI 
Sbjct: 538  MVKTKTIELVGYDRLPAGQNATVAVMSYSGYDIEDALIVNRASADRGFGRCHVLKKQTIP 597

Query: 752  LSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGE-------PYCSIYDKT 804
            +    N       +   ++  ++ HS +D DGL   G ++  G+       P  +     
Sbjct: 598  IRSFPNGTSERLAMLPPDQRPET-HSWLDQDGLVAPGSVVSQGDVLAARETPMDTRGPGP 656

Query: 805  TNSWRTN--SRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKG 862
            T  ++    + K  E   +D V V      N  Q   I  R TR P +GDKFSSRHGQKG
Sbjct: 657  TVGFKATPVAHKLPEPTNIDKVMVTDTEDGN--QLIKILTRQTRRPELGDKFSSRHGQKG 714

Query: 863  VCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPF 922
            VC  + P  DMPF+   G+ PD+I+NPH FPSRMT+  ++E ++ K G + GK    T F
Sbjct: 715  VCGLIVPQQDMPFND-QGICPDIIMNPHGFPSRMTVGKMIELLSGKAGLMAGKLQYGTAF 773

Query: 923  ANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYY 982
                    G    D S+ L+D         GF+Y G + L SG+ G  L   ++ GP+YY
Sbjct: 774  G-------GSKVVDMSQILID--------AGFSYAGKDTLTSGITGESLETYVYFGPIYY 818

Query: 983  QRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLH 1042
            Q+L+HMV DK   R TG    +TRQP +GR + GG+R GEMERD L+ +GA  LL +RL 
Sbjct: 819  QKLKHMVMDKMHARPTGPRANLTRQPTEGRSKDGGLRLGEMERDCLIGYGATQLLLERLM 878

Query: 1043 TCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVA 1102
              SD   A VC  CG +  + +                        C  CQ+SK +  + 
Sbjct: 879  ISSDAFDAQVCETCGMLAYSGW------------------------CKGCQSSKAVVKIT 914

Query: 1103 MPYVFRYLAAELAAMNIKITLQLGD 1127
            MPY  + L  EL  MNI   L + D
Sbjct: 915  MPYAAKLLIQELIGMNILPKLVMED 939


>gi|242009479|ref|XP_002425513.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative
            [Pediculus humanus corporis]
 gi|212509368|gb|EEB12775.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative
            [Pediculus humanus corporis]
          Length = 1175

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 318/1141 (27%), Positives = 511/1141 (44%), Gaps = 136/1141 (11%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN---FGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+  + +  G   +  +      G+ P+ML++  C L G   
Sbjct: 109  MPNEARLRNLTYSAPLYVDITKKIIKEGEDPIETKHQKSFIGKIPIMLRSTYCLLSGLTD 168

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  Y  KA +  
Sbjct: 169  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKFAY--KAEIRS 223

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  +  G   +     G+  +         +P+ IV +AL    D +
Sbjct: 224  CLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 283

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +D+           P + E VK  L E     +  +   L  IG   +    
Sbjct: 284  ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RGARP 328

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     A+ +++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 329  GVTKERRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   ++ +++ +   Q  I + GK F+   LA IK       +K
Sbjct: 389  GNKRLDLAGPLLAFLFRGLFKNLMKEVRMFAQKFI-DRGKDFN-LELA-IK-------TK 438

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   +   L TG    Q     Q RAG +    RL F   +S  R V+      G +  
Sbjct: 439  IITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 496

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G   GL+ ++     ++                + IL  L
Sbjct: 497  KPRQLHNTLWGMICPAETPEGAAVGLVKNIALMAYIS-----------VGSQPSPILEFL 545

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  S       + ++G  VG+    + E+++A LR+L+      VS  S
Sbjct: 546  EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVSEVS 602

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
            +I D  +      +  G      L     + +    ++++  E   N            +
Sbjct: 603  MIRDIRDREIRIYTDAGRICRPLLIVEGGQLLLKKNHVNMLKEREYNNFGWQVLVASGVV 662

Query: 599  ELIGPF-EQVFMEIRCPDGGDGGRRNAFPA--THEEIHPTGMLSVVANLTPYSDHNQSPR 655
            E I    E+  M    PD     +  A+    TH EIHP  +L V A++ P+ DHNQSPR
Sbjct: 663  EYIDTLEEETVMIAMSPDDLRQDKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPR 722

Query: 656  NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
            N YQ  M KQ MG  +     R D   + L  P  P+V T +       E P G N+IVA
Sbjct: 723  NTYQSAMGKQAMGVYITNYHVRMDTLAHVLFYPHKPLVITRSMEYLRFRELPAGINSIVA 782

Query: 716  VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD-GNKVDRGQKLFRRNKDA-- 772
            +L YTGY+ ED++ILN S+V+RG      Y++     S   G++ ++ +K  R+      
Sbjct: 783  ILCYTGYNQEDSVILNASAVERGYFRSVFYRSYKDSESKRIGDQEEQFEKPNRQTCQGMR 842

Query: 773  KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSR---KGSES 818
             +++  +D DG+             +G+ I   +    +   T    + ++    + SE+
Sbjct: 843  NAMYDKLDDDGIIAPGVRVSGDDVIIGKTITLPDNDDELEGATKRYTKRDASTFLRNSET 902

Query: 819  VFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGV 878
              VD V + + NS+   +   IR R  R P IGDKF+SRHGQKG C   +   DMPF+  
Sbjct: 903  GCVDQVMITL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT-C 959

Query: 879  TGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDES 938
             G+ PD+IINPHA PSRMTI  L+E +  K  S  G+  DATPF ++V            
Sbjct: 960  EGLTPDIIINPHAIPSRMTIGHLIECLQGKVSSNKGEIGDATPFNDAVN----------- 1008

Query: 939  KSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRST 998
               V ++  +L+  G+   G E++Y+G  G ++  ++F+GP YYQRL+HMV DK   R+ 
Sbjct: 1009 ---VQKISTLLQEYGYQLRGNELMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRAR 1065

Query: 999  GTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGS 1058
            G +  + RQP++GR R GG+RFGEMERD  ++HGAA  L +RL   SD +   VC+ CG 
Sbjct: 1066 GPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGL 1125

Query: 1059 VLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMN 1118
            +  A   +                      C  C+    +  V +PY  + L  EL +MN
Sbjct: 1126 IAIANLRN------------------NTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 1167

Query: 1119 I 1119
            I
Sbjct: 1168 I 1168


>gi|324120640|dbj|BAJ78711.1| RNA polymerase II second largest subunit [Blattella nipponica]
          Length = 1175

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 321/1155 (27%), Positives = 515/1155 (44%), Gaps = 164/1155 (14%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   +    ++   G+ P+ML++  C L G   
Sbjct: 109  MPNEARLRNLTYSAPLYVDITKTIVKDGEDPIETQHQKTFIGKIPIMLRSTYCLLSGLTD 168

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  Y  KA +  
Sbjct: 169  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKFAY--KAEIRS 223

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  +  G   +     G+  +         +P+ IV +AL    D +
Sbjct: 224  CLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 283

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +D+           P + E VK  L E     +  +   L  IG   +    
Sbjct: 284  ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RGARP 328

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  +     A+ +++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 329  GVTKDRRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   ++ +++ +   Q  I + GK F+   LA IK       +K
Sbjct: 389  GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFI-DRGKDFN-LELA-IK-------TK 438

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   +   L TG    Q    L  RAG +    RL F   +S  R V+      G +  
Sbjct: 439  IITDGLRYSLATGNWGDQKKAHL-ARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 496

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G   GL+ ++     ++                + IL  L
Sbjct: 497  KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  S       + ++G  VG+    + E+++A LR+L+      VS  S
Sbjct: 546  EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVSEVS 602

Query: 551  VIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------------RNISLPSEESQ 596
            +I D  D E+               ++T   +  RP+            R++ +  E+  
Sbjct: 603  MIRDIRDREI--------------RIYTDAGRICRPLLIVEGGTLLLKKRHVDMLKEKEY 648

Query: 597  N------------IELIGPF-EQVFMEIRCPDGGDGGRRNAF--PATHEEIHPTGMLSVV 641
            N            +E I    E+  M    P+     +  A+    TH EIHP  +L V 
Sbjct: 649  NNYGWQVLVASGVVEYIDTLEEETVMIAMSPEDLRVDKEYAYCQTYTHCEIHPAMILGVC 708

Query: 642  ANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKY 701
            A++ P+ DHNQSPRN YQ  M KQ MG  +     R D   + L  P  P+V T +    
Sbjct: 709  ASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYL 768

Query: 702  GIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVD 760
               E P G N+IVA+L YTGY+ ED++I+N S+V+RG      +++ +  +    G++ +
Sbjct: 769  RFRELPAGINSIVAILCYTGYNQEDSVIMNASAVERGFFRSVFFRSYKDAESKRIGDQEE 828

Query: 761  RGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR- 813
            + +K  R+       +L+  +D DG+   G  +   +       ++ D       T  R 
Sbjct: 829  QFEKPTRQTCQGMRNALYDKLDDDGIISPGIRVSGDDVVIGKTITLPDNDDELEGTTKRF 888

Query: 814  ---------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVC 864
                     + SE+  VD V + + NS+   +   IR R  R P IGDKF+SRHGQKG C
Sbjct: 889  TKRDASTFLRNSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTC 946

Query: 865  SQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFAN 924
               +   DMPF+   G+ PD+IINPHA PSRMTI  L+E +  K  S  G+  DATPF +
Sbjct: 947  GIQYRQEDMPFT-CEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSSNKGEIGDATPFND 1005

Query: 925  SVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQR 984
            +V               V ++  +L+  G+   G EV+Y+G  G ++  +IF+GP YYQR
Sbjct: 1006 AVN--------------VQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQIFLGPTYYQR 1051

Query: 985  LRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTC 1044
            L+HMV DK   R+ G +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +RL   
Sbjct: 1052 LKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEV 1111

Query: 1045 SDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMP 1104
            SD +   VC+ CG +  A   +                      C  C+    +  V +P
Sbjct: 1112 SDPYAIHVCNFCGLIAIANLRN------------------NTFECKGCKNKTQISQVRLP 1153

Query: 1105 YVFRYLAAELAAMNI 1119
            Y  + L  EL +M+I
Sbjct: 1154 YAAKLLFQELMSMSI 1168


>gi|324120614|dbj|BAJ78698.1| RNA polymerase II second largest subunit [Isonychia japonica]
          Length = 1150

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 318/1150 (27%), Positives = 513/1150 (44%), Gaps = 154/1150 (13%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVV---RERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   +    ++   G+ P+ML++  C L G   
Sbjct: 84   MPNEARLRNLTYSAPLYVDITKTVVKEGEDPIDTQHQKTFIGKIPIMLRSTYCLLNGLTD 143

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   + +D +  Y  +   IR
Sbjct: 144  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAMKDGKFAYKAE---IR 197

Query: 151  CVRKDQSSVTLKLYYLLNGSVRLGFWLQ----GKEYL---------LPVGIVLKALVDTN 197
              ++  S  T  L+  +N   R G  ++    G+  +         +P+ IV +AL    
Sbjct: 198  SCQEHSSRPTSTLW--VNMMARSGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVA 255

Query: 198  DLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQP 257
            D +I  H+   +D+           P + E VK  L E     +  +   L  IG   + 
Sbjct: 256  DRDILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RG 300

Query: 258  VIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNP 313
               G+  E     A  +++  +  H+  ++     K   L +M+ +L          D+ 
Sbjct: 301  ARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALSRRELDDR 360

Query: 314  DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKN 373
            D   N+ + L G L+    +   ++ +++ +   Q  I + GK F+   LA IK      
Sbjct: 361  DHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFI-DRGKDFN-LELA-IK------ 411

Query: 374  PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
             +K I   +   L TG    Q     Q RAG +    RL F   +S  R V+      G 
Sbjct: 412  -TKIITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG- 468

Query: 434  RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
            +    R+L    WG +CP  TP+G   GL+ ++     ++                + IL
Sbjct: 469  KLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPIL 517

Query: 494  RVLIGVGMIPSLPKLVKSGPPAVL---SVLLDGRVVGVIPSSEIEKVVAHLRRLK----- 545
              L       S+  L +  P A+L    + ++G  VG+    + E+++A LR+L+     
Sbjct: 518  EFLEEW----SMENLEEIAPSAILDATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDI 571

Query: 546  -VSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------- 597
             VS  S+I D  +      +  G      L       +   R+I +  +   N       
Sbjct: 572  IVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENSNLLLKKRHIDMLKDRDYNNYGWQFL 631

Query: 598  -----IELIGPF-EQVFMEIRCPDGGDGGRRNAFPA--THEEIHPTGMLSVVANLTPYSD 649
                 +E I    E+  M    P+     +  A+    TH EIHP  +L V A++ P+ D
Sbjct: 632  VSSGVVEYIDTLEEETVMIAMSPEDLHHDKEYAYCTTYTHCEIHPAMILGVCASIIPFPD 691

Query: 650  HNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTG 709
            HNQSPRN YQ  M KQ MG  +     R D   + L  PQ P+V T +       E P G
Sbjct: 692  HNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAG 751

Query: 710  TNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRN 769
             N++VA+  YTGY+ ED++I+N S+V+RG      Y++       +  ++   ++ F + 
Sbjct: 752  INSVVAIACYTGYNQEDSVIMNASAVERGFFRSIFYRSYK---DQESKRIGDQEEQFEKP 808

Query: 770  KDA------KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNS 812
              A       +++  +D DG+             +G+ I   E    +   T    + ++
Sbjct: 809  NRATCQGMRNAIYDKLDDDGIIAPGVRVSGDDVIIGKTITLPENDDELEGTTKRYTKRDA 868

Query: 813  R---KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWP 869
                + SE+  VD V + + NS+   + + IR R  R P IGDKF+SRHGQKG C   + 
Sbjct: 869  STFLRNSETGIVDQVMITL-NSEGY-KFSKIRVRSVRIPQIGDKFASRHGQKGTCGIQYR 926

Query: 870  DIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKT 929
              DMPF+   G+ PD++INPHA PSRMTI  L+E +  K  +  G+  DATPF ++V   
Sbjct: 927  QEDMPFT-CEGLTPDIVINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVN-- 983

Query: 930  NGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMV 989
                        V ++  +L+  G++  G EV+Y+G  G ++  +IF+GP YYQRL+HMV
Sbjct: 984  ------------VQKISSLLQEYGYHLRGNEVMYNGHTGRKINAQIFLGPTYYQRLKHMV 1031

Query: 990  SDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHV 1049
             DK   R+ G +  + RQP++GR R GG+RFGEMERD  ++HGAA  L +RL   SD + 
Sbjct: 1032 DDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYR 1091

Query: 1050 ADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRY 1109
              VC+ CG +  A   +                      C  C+    +  V +PY  + 
Sbjct: 1092 IHVCNFCGLIAIANLRN------------------NTFECKGCKNKTQISQVRLPYAAKL 1133

Query: 1110 LAAELAAMNI 1119
            L  EL +MNI
Sbjct: 1134 LFQELMSMNI 1143


>gi|337283877|ref|YP_004623351.1| DNA-directed RNA polymerase subunit beta [Pyrococcus yayanosii CH1]
 gi|334899811|gb|AEH24079.1| DNA-directed RNA polymerase subunit beta [Pyrococcus yayanosii CH1]
          Length = 1118

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 335/1195 (28%), Positives = 530/1195 (44%), Gaps = 191/1195 (15%)

Query: 15   LVRHHIESFDYMLDEGLSEMFDHCRQAK-------ISYTGKLMADVEFQ----------- 56
            LVR H++S++  ++ GL E+ +     K       + +    + + EFQ           
Sbjct: 27   LVRQHLDSYNAFIERGLQEVVNEFGGVKPDIPDFEVKFGRIRVGEPEFQEAHGQRKPLYP 86

Query: 57   --------------YLDAGSPVVRE------RFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
                          YL+   PVV+           G+ P+MLK++ C L G   ++L+ L
Sbjct: 87   MDARIRNLTYSAPLYLEM-IPVVKGIEQEPVEVRIGELPIMLKSKVCRLYGLSDEELIKL 145

Query: 97   KEEAAEMGGYFILNGLERVFRSV--ILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRK 154
             E+  + GGYFI+NG ERV  S+  I P +    ++V     +R+E Y  K    R   +
Sbjct: 146  GEDPKDPGGYFIINGSERVIVSIEDIAPNR----TLVEKD--ERQERYLAKCFSYRHGYR 199

Query: 155  DQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIV--LKALVDTNDLEIFNHLTCCYDEK 212
               +V  +   +L  S+             PV  V  ++AL    D +I +         
Sbjct: 200  ALITVERRKDGILYVSI--------PNVPKPVKFVYVMRALGLEKDKDIVD--------- 242

Query: 213  YKKEKGAVGSPLVSERVKIILAEVQDLS-LTTRLQCLQHIGEHFQPVIDGLQSESYYAVA 271
                  AVG+    E  +++   ++D S + T+++ L+ IG    P   G   E     A
Sbjct: 243  ------AVGND--PEVQQVLFDNLEDASDIQTQMEALELIGRLVAP---GQAREYRLKRA 291

Query: 272  ETVIRDYIFVHLNDNND----KFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
            E VI + +  H+  N +    K   L  M  K+  L       D+ D   N+ + L G L
Sbjct: 292  EYVIDNNLLPHMGVNPEDRIRKAYYLGMMALKVIELSLGRRDEDDKDHYANKRLRLAGDL 351

Query: 328  ITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTS-IETML 386
            +    +      ++  +  +    +  G+K+ F    NI + +  +    + T  IE  L
Sbjct: 352  LKDLFRVAFAQLVKDIQYQMTKTYQRKGEKYTF---GNIHRFIRNSIRPDVLTERIEHSL 408

Query: 387  KTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESW 446
             TG  A   G     R G +   +R N++  +S  R V            + R L    W
Sbjct: 409  ATG--AWPGG-----RTGVSQLLDRTNYMSTLSHLRRVTSPLDREQPHFEA-RDLHGTHW 460

Query: 447  GFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLP 506
            G +CP  TP+G  CGL+ ++    ++ +    +  +R++          L+ +G+IP   
Sbjct: 461  GRICPTETPEGPNCGLVKNLALMAQITTAVPEK-EVREY----------LMKLGIIPIE- 508

Query: 507  KLVKSGPPAVLSVLLDGRVVGVIPSSE--IEKVVAHLRRLKVSAASVIP--DDLEVGYVP 562
              V+   P +  V L+G ++G I   +  +E++    R  K+S    +   +D++  YV 
Sbjct: 509  --VRRPSPELWRVYLNGVLIGTIEDGKALVERIKKDRRSGKISDVINVAYYEDIKEVYVN 566

Query: 563  LSLGGAY-PGLYLFTSPPKFVRP-VRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGG 620
               G    P + +    PK  R  V  +     +  ++  +G  E +  E          
Sbjct: 567  SDDGRVRRPLIIVENGKPKLTREHVEAVKQGRLKWSDLIKMGIIEYLDAE---------E 617

Query: 621  RRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFS 670
              NA+ A          TH E+ P  +L + A+L PY +HN +PRN Y   MAKQ++G  
Sbjct: 618  EENAYVAMWPWEVTEEHTHLELMPAAILGLPASLVPYPEHNAAPRNTYGAGMAKQSLGLG 677

Query: 671  VQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMIL 730
                + R D + + L  PQ P+V +      G ++ P G N +VA+LAY GY+MEDA+I+
Sbjct: 678  WANFRIRVDTRGHLLHYPQVPLVNSRIMKAVGYEDRPAGQNFVVAILAYQGYNMEDAIII 737

Query: 731  NKSSVDRGMCHGQIY-------------QTETIDLSDDGNKVDRGQKLFRRNKDAKSL-- 775
            NK+S++RG+     +             QT+  ++ D   +  RG+K +R N D   L  
Sbjct: 738  NKASIERGLARSTFFRTYEAEEKKYLGGQTDRFEIPDPTVRGYRGEKYYR-NLDEDGLIF 796

Query: 776  -HSVIDSDGLPYVGQMIHPG--EPYCSIYDKTTNSWRTNSR--KGSESVFVDYVAVDMKN 830
              S +D   +  +G+   P   E    +        R  S   + SE   VD V +    
Sbjct: 797  PESKVDGKDV-LIGRTSPPRFLEERGGLGGMILQERRETSVAVRPSEKGIVDKVII--TE 853

Query: 831  SKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPH 890
            + +  +   +  R  R P +GDKF+SRHGQKGV   + P  DMP++  +G+ PDLI+NPH
Sbjct: 854  TGDGTKLVKVTVRDLRIPELGDKFASRHGQKGVIGLIVPQEDMPWTE-SGIVPDLIVNPH 912

Query: 891  AFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLR 950
              PSRMT+  L+E++  K  SL G+ +D T F    ++                      
Sbjct: 913  GIPSRMTVGQLIEAIGGKVASLKGRRVDGTAFIGEPEERLRKELE--------------- 957

Query: 951  TCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIK 1010
              GF ++G EV+Y G+ G  L  +IFIG +YYQRL HMV+DK   RS G +  +T+QP +
Sbjct: 958  ELGFKHNGREVMYDGITGKRLVADIFIGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTE 1017

Query: 1011 GRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKR 1070
            GR R GG+RFGEMERD L+ HGAA LL +RL   SD     VC  CG +     +  ++R
Sbjct: 1018 GRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIA----LEDKRR 1073

Query: 1071 AIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
                           KV C  C   + +  V M Y F+ L  EL AM I+  L L
Sbjct: 1074 G--------------KVYCPVCGEEERISKVEMSYAFKLLLDELKAMIIRPKLNL 1114


>gi|379005506|ref|YP_005261178.1| DNA-directed RNA polymerase subunit B [Pyrobaculum oguniense TE7]
 gi|375160959|gb|AFA40571.1| DNA-directed RNA polymerase subunit B [Pyrobaculum oguniense TE7]
          Length = 1127

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 332/1122 (29%), Positives = 513/1122 (45%), Gaps = 165/1122 (14%)

Query: 57   YLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVF 116
            Y+D   P   E F  G+ P+M+K++RC+L      +     E+  + GGYFI+NG ER  
Sbjct: 117  YVD-DEPYATETFYIGELPIMVKSKRCNLSRLRPSEYPKRFEDPQDFGGYFIINGSER-- 173

Query: 117  RSVILPKQNYPMSMVRSSFRDRREGYTDK--AVVIRCVRKDQSSVTLKLYYLLNGSVRLG 174
              VI+ +++    +      D+ +  + K  A  I      +S++T++L    N    + 
Sbjct: 174  --VIISQEDL---VADRPIYDKGDKPSVKFLAKTISTGIGYRSTLTVEL----NKDGVIY 224

Query: 175  FWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILA 234
              L      +P  I +KAL    D ++   ++   D     +K  + S +V+ ++ I   
Sbjct: 225  ATLSAIPVKIPFPIYMKALGLETDEDVVKAVSDDPD----IQKELLPSLVVANQIAI--- 277

Query: 235  EVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNND------ 288
                    TR   L +IG     V  G         A  ++  Y   HL           
Sbjct: 278  --------TREDALDYIGGK---VAVGQPRPVRVERALQLLDRYFLPHLGTTVQDEKKQQ 326

Query: 289  -----KFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKG 343
                 K  +L  +++ L  L       D+ D + N+ + L G L+T   +          
Sbjct: 327  EIRLKKALMLGQIVKGLVELQLGRRKPDDKDHVANKRVRLVGDLMTQLFRTVF------- 379

Query: 344  KKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRA 403
            K+L+Q E+ +  +K+  +    I       P  Q     + + +  R A  TG  +  + 
Sbjct: 380  KQLLQ-ELRSQLEKY--YARGRI-------PHLQTIVRPDIITERVRQALATGNWVGGKT 429

Query: 404  GYTVQAERLNFLRFISFFRAVHRGASFAGLRTT---SVRKLLPESWGFLCPVHTPDGEPC 460
            G +   +R N+L  +S+ R V    S    RT      R L P  WG LC V TP+G+  
Sbjct: 430  GVSQILDRTNYLSTLSYLRRVVSSLS----RTQPHFEARDLHPTQWGRLCAVETPEGQNV 485

Query: 461  GLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVL 520
            GL+ ++     + +  D              + ++L+  G++P L K  + G      V 
Sbjct: 486  GLVKNLALLAEITTGVDE-----------NEVEQMLLQQGVVPIL-KAREEGIRGA-EVY 532

Query: 521  LDGRVVGVIPS-SEIEKVVAHLRRLKVSAASVIPDDLEVGYVP-----LSLGGAY--PGL 572
            L+GR++G+ P   E+ K V  LRR        I D++ + Y+       S GG    P L
Sbjct: 533  LNGRLIGIHPEPEELVKTVRSLRR-----QGKISDEINIAYLNGVVYVNSDGGRIRRPLL 587

Query: 573  YLFTSPPKFVRPVRNISLPSEESQN-------IELIGPFEQVFMEIRCPDGGDGGRRNAF 625
             +     K  + +       E + +       +E +   E+    I     GD       
Sbjct: 588  VVEDGKLKLTKDIVERVKRGELTWDDLLKMGVVEYLDADEEENAHIAVDPEGDLSN---- 643

Query: 626  PATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHL 685
              TH EI P+ +L  +A++ PY +HNQSPRN Y+  MAKQ++G       ++ D + + L
Sbjct: 644  -YTHVEIIPSSILGAIASIIPYLEHNQSPRNQYEAAMAKQSLGLPQSNFLYKLDSRGHML 702

Query: 686  QTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIY 745
              P+ PIV T      G  + P G NA+VA+L YTGY++EDA+ILNK+SV+RGM     Y
Sbjct: 703  YYPERPIVTTRGLELVGYSKRPAGQNAVVALLTYTGYNIEDAVILNKASVERGMFRSVFY 762

Query: 746  QT-------------ETIDLSDDGNKVDRGQKLFRR-NKDAKSLHSVIDSDGLPYVGQMI 791
            +T             + I++ D   K  RG + +   ++D  +   V  S     +G+  
Sbjct: 763  RTYETEEQRYPGGEEDKIEIPDSSVKGYRGPEAYSHLDEDGIAPPEVYVSSSEVLIGKT- 821

Query: 792  HPGEPYCSIYDKTTNSWRTNS----RKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRN 847
             P   Y ++  +     R ++    R+G + + VD V +      N  +   +R R  R 
Sbjct: 822  SPPRFYTTLETERILKERRDASVAVRRGEKGI-VDRVIITESPEGN--KLVKVRLRELRI 878

Query: 848  PIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAA 907
            P +GDKF+SRHGQKGV   L    DMPF+   G+ PD+I+NPHA PSRMT+A LLES+A 
Sbjct: 879  PELGDKFASRHGQKGVVGMLLRQEDMPFTE-EGIVPDIIVNPHALPSRMTVAQLLESMAG 937

Query: 908  KGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVY 967
            K G+  G  +DATPF           G  E     ++L ++L   G+ + G EV+YSG+ 
Sbjct: 938  KVGAATGNLVDATPFE----------GVKE-----EDLRKLLLKLGYKWDGKEVMYSGIT 982

Query: 968  GTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDS 1027
            G  L  +IFIG VYYQ+L HMV+DK   R+ G +  +TRQP +GR R GG+R GEMERD 
Sbjct: 983  GERLVADIFIGIVYYQKLHHMVADKIHARARGPVQILTRQPTEGRSREGGLRLGEMERDV 1042

Query: 1028 LLAHGAAYLLHDRLHTCSDYHVADVCSLCG--SVLTATFIHPQKRAIREIGGLPPARAPK 1085
            L+AHGA+ LL++RL   SD +   VC LCG  + L A    P+                 
Sbjct: 1043 LIAHGASALLYERLVESSDKYTMYVCELCGLPAYLDAKSNKPK----------------- 1085

Query: 1086 KVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
               C     +     V +PY F+ L  EL A+ I   L+L +
Sbjct: 1086 ---CPIHGDTGQFAKVTVPYAFKLLLQELIALGIYPKLELSE 1124


>gi|324120602|dbj|BAJ78692.1| RNA polymerase II second largest subunit [Nipponatelura sp. 66-1]
          Length = 1175

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 323/1164 (27%), Positives = 519/1164 (44%), Gaps = 170/1164 (14%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   V    ++   G+ P+ML++  C L G   
Sbjct: 109  MPNEARLRNLTYSAPLYVDITKTIIKDGDEPVETQNQKTFIGKIPIMLRSTYCLLNGLTD 168

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  +  +   IR
Sbjct: 169  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKYAFKSE---IR 222

Query: 151  CVRKDQSSVTLKLYYLLNGSVRLGFWLQ----GKEYL---------LPVGIVLKALVDTN 197
              ++  S  T  L+  +N   R G  ++    G+  +         +P+ IV +AL    
Sbjct: 223  SCQEHSSRPTSTLW--VNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVA 280

Query: 198  DLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQP 257
            D +I  H+   +D+           P + E VK  L E     +  +   L  IG   + 
Sbjct: 281  DRDILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RG 325

Query: 258  VIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNP 313
               G+  E     A  +++  +  H+  ++     K   L +M+ +L          D+ 
Sbjct: 326  ARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDR 385

Query: 314  DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKN 373
            D   N+ + L G L+    +   ++ +++ +   Q  I+  GK F+   LA IK      
Sbjct: 386  DHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDR-GKDFNL-ELA-IK------ 436

Query: 374  PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
             +K I   +   L TG    Q     Q RAG +    RL F   +S  R V+      G 
Sbjct: 437  -TKIITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG- 493

Query: 434  RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
            +    R+L    WG +CP  TP+G   GL+ ++     ++                + IL
Sbjct: 494  KLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPIL 542

Query: 494  RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VS 547
              L    M  +L ++  S       + ++G  VG+    + E+++A LR+L+      VS
Sbjct: 543  EFLEEWSM-ENLEEIAPSAISDATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVS 599

Query: 548  AASVIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------------RNISLPSE 593
              S+I D  D E+               ++T   +  RP+            ++I +  E
Sbjct: 600  EVSMIRDIRDREI--------------RIYTDAGRICRPLLIVENGHLLLKKKHIDMLKE 645

Query: 594  ESQN------------IELIGPFEQ-VFMEIRCPDGGDGGRRNAFPA--THEEIHPTGML 638
            +  N            +E I   E+   M    PD     +  A+    TH EIHP  +L
Sbjct: 646  KEYNNYGWQVLVAQGVVEYIDTLEEETVMIAMTPDDLRQDKEYAYCTNYTHCEIHPAMIL 705

Query: 639  SVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTY 698
             V A++ P+ DHNQSPRN YQ  M KQ MG  +     R D   + L  P  P+V T + 
Sbjct: 706  GVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSM 765

Query: 699  TKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGN 757
                  E P G N++VA+  YTGY+ ED++I+N S+V+RG      +++ +  +    G+
Sbjct: 766  EYLRFRELPAGINSVVAIACYTGYNQEDSVIMNASAVERGFFRSVFFRSYKDAESKGMGD 825

Query: 758  KVDRGQKLFRRNKDA--KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKT 804
            + ++ +K  R        +++  +D DG+             +G+ I   E    +   T
Sbjct: 826  QEEQFEKPSRTTCQGMRNAIYDKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELEGTT 885

Query: 805  TNSWRTNSR---KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQK 861
                + ++    + SE+  VD V + + NS+   +   IR R  R P IGDKF+SRHGQK
Sbjct: 886  KRYTKRDASTFLRNSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQK 943

Query: 862  GVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATP 921
            G C   +   DMPF+   G+ PD+IINPHA PSRMTI  L+E +  K  S  G+  DATP
Sbjct: 944  GTCGIQYRQEDMPFT-CEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSSNKGEIGDATP 1002

Query: 922  FANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVY 981
            F ++V               V ++  +L+  G++  G EV+Y+G  G ++  +IF+GP Y
Sbjct: 1003 FNDAVN--------------VQKISTLLQEYGYHLRGNEVMYNGHTGRKINAQIFLGPTY 1048

Query: 982  YQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRL 1041
            YQRL+HMV DK   R+ G +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +RL
Sbjct: 1049 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERL 1108

Query: 1042 HTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETV 1101
               SD +   VC+ CG +  A   +                      C  C+    +  +
Sbjct: 1109 FEVSDPYRVHVCNFCGIIAIANLRN------------------NTFECKGCKNKTQISQI 1150

Query: 1102 AMPYVFRYLAAELAAMNIKITLQL 1125
             +PY  + L  EL +MNI   L +
Sbjct: 1151 RLPYAAKLLFQELMSMNIAPRLMI 1174


>gi|324120648|dbj|BAJ78715.1| RNA polymerase II second largest subunit [Cryptotympana facialis]
          Length = 1175

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 320/1141 (28%), Positives = 504/1141 (44%), Gaps = 136/1141 (11%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN---FGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   +  +      G+ P+ML++  C L G   
Sbjct: 109  MPNEARLRNLTYSAPLYVDITKTIVKEGEDPIETQHQKSFIGKIPIMLRSTYCLLNGLTD 168

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  Y  KA +  
Sbjct: 169  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKFAY--KAEIRS 223

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  +  G   +     G+  +         +P+ IV +AL    D +
Sbjct: 224  CLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 283

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +D+           P + E VK  L E     +  +   L  IG   +    
Sbjct: 284  ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RGARP 328

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     A  +++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 329  GVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   ++ +++ +   Q  I + GK F+   LA IK       +K
Sbjct: 389  GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFI-DRGKDFN-LELA-IK-------TK 438

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   +   L TG    Q     Q RAG +    RL F   +S  R V+      G +  
Sbjct: 439  IITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 496

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G   GL+ ++     ++                + IL  L
Sbjct: 497  KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  S       + ++G  VG+    + E+++  LR+L+      VS  S
Sbjct: 546  EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMGTLRKLRRQMDIIVSEVS 602

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
            +I D  +      +  G      L       +   R+I    E   N            +
Sbjct: 603  IIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKRHIDNLKERDYNNYGWQVLVSSGVV 662

Query: 599  ELIGPF-EQVFMEIRCPDGGDGGRRNAFPA--THEEIHPTGMLSVVANLTPYSDHNQSPR 655
            E I    E+  M    PD     +  A+    TH EIHP  +L V A++ P+ DHNQSPR
Sbjct: 663  EYIDTLEEETTMIAMSPDDLRQDKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPR 722

Query: 656  NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
            N YQ  M KQ MG  +     R D   + L  P  P+V T +       E P G N+IVA
Sbjct: 723  NTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVA 782

Query: 716  VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVDRGQKLFRRNKDA-- 772
            +  YTGY+ ED++ILN S+V+RG      +++ +  +    G++ ++ +K  R+      
Sbjct: 783  IACYTGYNQEDSVILNASAVERGFFRSVFFRSYKDAESKRVGDQEEQFEKPTRQTCQGMR 842

Query: 773  KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGSES 818
             +++  +D DG+   G  +   +       ++ D       T  R          + SE+
Sbjct: 843  NAIYDKLDDDGIIAPGLRVSGDDVVIGKTMTLPDNEDELEGTTKRYTKRDASTFLRNSET 902

Query: 819  VFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGV 878
              VD V + + NS+   +   IR R  R P IGDKF+SRHGQKG C   +   DMPF+  
Sbjct: 903  GIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT-C 959

Query: 879  TGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDES 938
             G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF ++V            
Sbjct: 960  EGISPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVN----------- 1008

Query: 939  KSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRST 998
               V ++  +L+  G+   G EV+Y+G  G ++  +IFIGP YYQRL+HMV DK   R+ 
Sbjct: 1009 ---VQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQIFIGPTYYQRLKHMVDDKIHSRAR 1065

Query: 999  GTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGS 1058
            G +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +RL   SD +   VC+ CG 
Sbjct: 1066 GPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGL 1125

Query: 1059 VLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMN 1118
            +  A   +                      C  C+    +  V +PY  + L  EL +MN
Sbjct: 1126 IAIANLRN------------------NTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 1167

Query: 1119 I 1119
            I
Sbjct: 1168 I 1168


>gi|324120610|dbj|BAJ78696.1| RNA polymerase II second largest subunit [Mnais pruinosa pruinosa]
          Length = 1175

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 323/1158 (27%), Positives = 512/1158 (44%), Gaps = 170/1158 (14%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+       G   +    ++   G+ P+ML++  C L G   
Sbjct: 109  MPNEARLRNLTYSAPLYVDITKTVAKEGEEPIETQHQKTFIGKIPIMLRSTYCLLNGLTD 168

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  +  KA +  
Sbjct: 169  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKFAF--KAEIRS 223

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  +  G   +     G+  +         +P+ IV +AL    D +
Sbjct: 224  CLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 283

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +D+           P + E VK  L E     +  +   L  IG   +    
Sbjct: 284  ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RGARP 328

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     A  +++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 329  GVTKEKRVKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   ++ +++ +   Q  I + GK F+   LA IK       +K
Sbjct: 389  GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFI-DRGKDFN-LELA-IK-------TK 438

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   +   L TG    Q     Q RAG +    RL F   +S  R V+      G +  
Sbjct: 439  IITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 496

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G   GL+ ++         Y S G+        + IL  L
Sbjct: 497  KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMA-----YISVGS------QPSPILEFL 545

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  S       + ++G  VG+    + E+++A LR+L+      VS  S
Sbjct: 546  EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVSEVS 602

Query: 551  VIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------------RNISLPSEESQ 596
            +I D  D E+               ++T   +  RP+            R+I +  E   
Sbjct: 603  MIRDIRDREI--------------RIYTDAGRICRPLLIVENGTLLLKKRHIEMLKEREY 648

Query: 597  N------------IELIGPF-EQVFMEIRCPDGGDGGRRNAFPA--THEEIHPTGMLSVV 641
            N            +E I    E+  M    P+     +  A+    TH EIHP  +L V 
Sbjct: 649  NNYGWQVLVASGVVEYIDTLEEETVMIAMSPEDLRQEKEYAYCTTYTHCEIHPAMILGVC 708

Query: 642  ANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKY 701
            A++ P+ DHNQSPRN YQ  M KQ MG  +     R D   + L  P  P+V T +    
Sbjct: 709  ASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYL 768

Query: 702  GIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDR 761
               E P G N++VA+  YTGY+ ED++I+N S+V+RG      Y++       +  +V  
Sbjct: 769  RFRELPAGINSVVAIACYTGYNQEDSVIMNASAVERGFFRSVFYRSYK---DQESKRVGD 825

Query: 762  GQKLFRRNKDA------KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKT 804
             ++ F +   A       +++  +D DG+             +G+ I   E    +   T
Sbjct: 826  QEEQFEKPTRATCQGMRNAIYDKLDDDGIIAPGVRVSGDDVVIGKTITLPENDDELEGTT 885

Query: 805  TNSWRTNSR---KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQK 861
                + ++    + SE+  VD V + + NS+   +   IR R  R P IGDKF+SRHGQK
Sbjct: 886  KRFTKRDASTFLRNSETGIVDQVMITL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQK 943

Query: 862  GVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATP 921
            G C   +   DMPF+   G+ PD+IINPHA PSRMTI  L+E +  K  S  G+  DATP
Sbjct: 944  GTCGIQYRQEDMPFT-CEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSSNKGEIGDATP 1002

Query: 922  FANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVY 981
            F ++V               V ++  +L+  G+   G EV+++G  G ++  +IF+GP Y
Sbjct: 1003 FNDAVN--------------VQKISSLLQEYGYQLRGNEVMFNGHTGRKINAQIFLGPTY 1048

Query: 982  YQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRL 1041
            YQRL+HMV DK   R+ G +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +RL
Sbjct: 1049 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERL 1108

Query: 1042 HTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETV 1101
               SD +   VC+ CG +  A   +                      C  C+    +  V
Sbjct: 1109 FEVSDPYRIHVCNFCGLIAIANLRN------------------NTFECKGCKNKTQISQV 1150

Query: 1102 AMPYVFRYLAAELAAMNI 1119
             +PY  + L  EL +MNI
Sbjct: 1151 RLPYAAKLLFQELMSMNI 1168


>gi|405953099|gb|EKC20822.1| DNA-directed RNA polymerase III subunit RPC2 [Crassostrea gigas]
          Length = 1060

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 317/1106 (28%), Positives = 485/1106 (43%), Gaps = 168/1106 (15%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
             CR   ++Y+  +  D+E  Y      +VR     G+ P+ML++  C L G    ++  L
Sbjct: 100  ECRLRDMTYSAPITVDIE--YTRGNQRIVRNNLPIGRMPIMLRSSNCVLNGKSPAEMAKL 157

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
             E   + GGYFI  G E+V   +++ +Q     M+  +   R              RK +
Sbjct: 158  NECPMDPGGYFITRGTEKV---ILIQEQLSKNRMIVDTDTGRNRSIECSVTSSTHERKSK 214

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYL--LPVGIVLKALVDTNDLEIFNHLTCCYDEKYK 214
            + V+ K            F+L+   +   +PV I  KA+    D EI             
Sbjct: 215  TYVSTK---------HEKFYLRHNTFTEDIPVAIAFKAMGMECDQEIVQ----------- 254

Query: 215  KEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHF-QPVIDGLQSESYYAVAET 273
                     ++    +I+ +    L    R Q L++IG+   Q  + G   ++    A  
Sbjct: 255  ---------MIGSEEEILTSVAPCLEECHRAQALKYIGQRVRQRRVWGGSKKTKVDEARE 305

Query: 274  VIRDYIFVHLNDNNDKFNL----LIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
             + D +  H+      F L    L  M++++          D+ D   N+ + L G L++
Sbjct: 306  ALHDIVLAHVPVVEWNFKLKAAYLALMVRRVILAKGEQVKGDDRDYYGNKRLELAGQLLS 365

Query: 330  IYLKEKLEDWLRKGKKLIQDEI-ENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKT 388
            +  ++  + +  + K++    I +    +FD      I K M ++   QI   +   + T
Sbjct: 366  LLFEDLFKKFNSELKRIADMTIPKPRAAQFD------IIKHMRQD---QITNGLVNAIST 416

Query: 389  GRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGF 448
            G  + +      +RAG T    RL+F+  +     +   A                    
Sbjct: 417  GNWSIKRFK--MERAGVTQVLSRLSFISALGMMTRISSQA-------------------- 454

Query: 449  LCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKL 508
                       CGL+ ++     + +  +    IR    M    +++L G  M  S    
Sbjct: 455  -----------CGLVKNLALMTHITTDMEEDPIIRLAFNMGVEDIQLLSGEEMTSS---- 499

Query: 509  VKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGA 568
                   V  V L+G ++GVI   + +K+V   R ++ S     P  +     PL     
Sbjct: 500  ------RVYLVFLNGNILGVI--RDHKKLVRTFRLMRRSGYISEPYIIVQKGQPLVKQRH 551

Query: 569  YPGLYL-FTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPA 627
               L   F S   F++      L   E +N  +I  +E             G  R     
Sbjct: 552  IEELTQGFRSFDDFLKEGLVEYLDVNE-ENDCMISLYES------------GITRET--- 595

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH EI P  +L V A L PY  HNQSPRN YQC M KQ MG      + R D  +Y L  
Sbjct: 596  THLEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLCY 655

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
            PQ P+V++ T      D+ P G NA VAV++++GYD+EDA++LNK+S+DRG     +Y+ 
Sbjct: 656  PQAPLVKSKTIELIHFDKLPAGQNATVAVMSFSGYDIEDALVLNKASLDRGFGRCLVYRK 715

Query: 748  ETIDLSDDGNKVDRGQKLFRRNKDAKS-----LHSVIDSDGLPYVGQMIHPGEPYCSIYD 802
            +   L    N+     K+     DA +      H  +DSDG+   G+ +   +   + + 
Sbjct: 716  QACTLKRYTNQ--SFDKVMGPMVDASTHKPIWKHEALDSDGICSPGERMENRQVLVNKWM 773

Query: 803  KTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA---NIRFRHTRNPIIGDKFSSRHG 859
             T         KG+E+ +++ V +    S N P++A    I  R TR P IGDKFSSRHG
Sbjct: 774  PTVTMNPIQQYKGAEACYIEKVLI----SSN-PEEAFLIKILQRQTRRPEIGDKFSSRHG 828

Query: 860  QKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDA 919
            QKGVC  + P  DMPF+ + G+ PD+I+NPH +PSRMT+  L+E + +K G L GKF   
Sbjct: 829  QKGVCGLIVPQEDMPFTDL-GICPDIIMNPHGYPSRMTVGKLMELLGSKAGVLEGKFHYG 887

Query: 920  TPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGP 979
            T F        GD   D S+ LV          GFNY G + + SG+ G  L   IF GP
Sbjct: 888  TAFG-------GDKVCDLSEDLVKH--------GFNYLGKDFVTSGITGEPLEAYIFFGP 932

Query: 980  VYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHD 1039
            +YYQ+L+HMV DK   R+ G    +TRQP +GR R GG+R GEMERD L+ +GA+ LL +
Sbjct: 933  IYYQKLKHMVLDKMHARAKGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLE 992

Query: 1040 RLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGME 1099
            RL   SD    DVC  CG +  + +                        C  C++S+ + 
Sbjct: 993  RLMISSDAFEVDVCGECGLLGYSGW------------------------CEFCKSSRHVS 1028

Query: 1100 TVAMPYVFRYLAAELAAMNIKITLQL 1125
            T+ MPY  + L  EL +MNI   L L
Sbjct: 1029 TLKMPYACKLLFQELQSMNIVPRLSL 1054


>gi|167382955|ref|XP_001733337.1| DNA-directed RNA polymerase III subunit RPC2 [Entamoeba dispar
            SAW760]
 gi|165901325|gb|EDR27409.1| DNA-directed RNA polymerase III subunit RPC2, putative [Entamoeba
            dispar SAW760]
          Length = 1115

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 322/1106 (29%), Positives = 495/1106 (44%), Gaps = 157/1106 (14%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMF--------------------------------- 35
            F   R LVR HI+SF+Y +DE + ++                                  
Sbjct: 49   FVKARGLVRQHIDSFNYFIDEEIKQIVKANDKITCDADPTFYLKYLDVKVDTPCVEVDYK 108

Query: 36   ------DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
                    CR   ISYT  ++A++++        + R+    G  P+ML+++ C L    
Sbjct: 109  KESITPQECRLRDISYTAPILANIQYT---RDKKIFRKTVTIGYMPIMLQSKHCVLYNNT 165

Query: 90   SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
             ++ +   E   + GGYFI+ G+ERV    IL ++   MS  R       +G+   +V  
Sbjct: 166  FEEFIRHGECPMDPGGYFIVKGVERV----ILSQEQ--MSKNRILIETTTQGFLSASVTS 219

Query: 150  RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
                    +V     YL  G + L      ++  LP+ IV+KA+   +D+E         
Sbjct: 220  ATHEVKSRTVV----YLKKGKLYLKHNSLTED--LPIMIVIKAMGMESDMEFLQF----- 268

Query: 210  DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDG----LQSE 265
                      VG+   S+ +  I  E +   +  + + L++IG H + +  G    +   
Sbjct: 269  ----------VGNHYTSKMINSI-EECKTKDVLNQREALRYIGNHLK-IYTGQKGYISKR 316

Query: 266  SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLV---DHTSVSDNPDSLQNQEIL 322
                 A  V+ + +  H+  N   F   I  L  + + +   D T   D+ D   N+ + 
Sbjct: 317  PKIEEARDVLANLVLPHIEVNRYNFKTKIIYLALMVNWILKADETGELDDKDYYGNKRME 376

Query: 323  LPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSI 382
            L G L+++      ED  ++    +Q+       K       +I K +  +P +     I
Sbjct: 377  LAGQLMSLLF----EDLFKQFNTDLQNAANKGLTKKSRSETFDIIKCI--SPHRITQGLI 430

Query: 383  ETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKL 441
             ++     +  +  +D   RAG T    RL+++  +     ++  + F   R  S  R L
Sbjct: 431  HSLSTGNWVLKRFNMD---RAGITQVLSRLSYISALGMMTRLN--SHFEKTRKVSGPRSL 485

Query: 442  LPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGM 501
                WG +CP  TP+GE CGL+ + +    V +  D +           +I+ +L  +G+
Sbjct: 486  QGSQWGMVCPSDTPEGESCGLVKNFSLLTEVTTDSDDQ-----------AIVTMLFNLGV 534

Query: 502  IPSLPKLVKSGPPAVLS---VLLDGRVVGVIPSS-EIEKVVAHLRRLKVSAASVIPDDLE 557
              +   L+       LS   V L+G+++G+  +     K    LRR       V    L 
Sbjct: 535  EDA--NLISGDEVNALSSYLVFLNGQLLGIHQNPIHFLKQCRLLRRHGRLGKKV---SLH 589

Query: 558  VGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGG 617
            +  +  S+  +  G  +   P   V   ++   P E    +E     E    E       
Sbjct: 590  LNEMQRSINISSDGGRV-CRPLIVVENCKSKIGPKEIRDIVEGFKSIEDCLKEGLIEYLD 648

Query: 618  DGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTM 667
                 N++ A          TH EI P  +L VVA L PY  HNQSPRN YQC M KQ +
Sbjct: 649  VNEENNSYIAISENEINEHTTHLEIDPLSILGVVAGLIPYPHHNQSPRNTYQCAMGKQAI 708

Query: 668  GFSVQALKF-RADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMED 726
            G ++   +F R D  LY L  PQ P+V+T T      D+ P G NA+VAV++Y+GYD+ED
Sbjct: 709  G-TIGYNQFKRIDTLLYLLYYPQIPMVKTKTIDMINFDKLPAGQNAMVAVMSYSGYDIED 767

Query: 727  AMILNKSSVDRGMCHGQIY-QTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLP 785
            A ILNK+S+DRG     +Y + E +         DR        ++     S +D DG+ 
Sbjct: 768  ASILNKASIDRGYGRCFVYRKAECVIKKYKNGACDRVVCPTDEERELPKYKS-LDFDGVC 826

Query: 786  YVGQMIHPGE-------PYCSIYDKTTNSWRTN-------SRKGSESVFVDYVAVDMKNS 831
              G +++PG        P  ++   TT++ + +       + KG    +VD V +   ++
Sbjct: 827  SPGSILNPGSIYLNKQVPINTVGTLTTDTIKDDEYRREVLTYKGPVPSYVDQVLI--TSN 884

Query: 832  KNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHA 891
            +  P K  I  R +R P +GDKFSSRHGQKGV   +    DMPF+  TG+ PD+I+NPH 
Sbjct: 885  EEEPLKVKISLRTSRRPELGDKFSSRHGQKGVTGLIVNQEDMPFTN-TGICPDVIMNPHG 943

Query: 892  FPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRT 951
            FPSRMT+  LLE V+ K G + G F   T F        GD   D SK L++        
Sbjct: 944  FPSRMTVGKLLELVSGKAGLMDGSFKYGTAFG-------GDKLDDMSKILIE-------- 988

Query: 952  CGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKG 1011
             G++Y G E LYSG+ G  L   IFIGPVYYQ+L+HMV DK   R+ G    +TRQP +G
Sbjct: 989  AGYSYDGKEELYSGITGKALNAYIFIGPVYYQKLKHMVLDKMHARARGPKSSLTRQPTEG 1048

Query: 1012 RKRGGGIRFGEMERDSLLAHGAAYLL 1037
            R R GG+R GEMERD L+ +GA  LL
Sbjct: 1049 RSRDGGLRLGEMERDCLIGYGATNLL 1074


>gi|324120608|dbj|BAJ78695.1| RNA polymerase II second largest subunit [Epiophlebia superstes]
          Length = 1175

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 324/1163 (27%), Positives = 508/1163 (43%), Gaps = 180/1163 (15%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+       G   +    ++   G+ P+ML++  C L G   
Sbjct: 109  MPNEARLRNLTYSAPLYVDITKTVAKEGEEPIETQHQKTFIGKIPIMLRSTYCLLNGLTD 168

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVF--RSVILPKQNYPMSMVRSSFRDRREGYTDKAVV 148
            + L  L E   + GGYFI+NG E+V   +  +     Y  SM    F  + E        
Sbjct: 169  RDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKFAFKAE-------- 220

Query: 149  IRCVRKDQSSVTLKLYYLLNGSVRLGFWLQ----GKEYL---------LPVGIVLKALVD 195
            IR   +  S  T  L+  +N   R G  ++    G+  +         +P+ IV +AL  
Sbjct: 221  IRSCLEHSSRPTSTLW--VNMMARCGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGF 278

Query: 196  TNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHF 255
              D +I  H+   +D+           P + E VK  L E     +  +   L  IG   
Sbjct: 279  VADRDILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA-- 323

Query: 256  QPVIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSD 311
            +    G+  E     A  +++  +  H+  ++     K   L +M+ +L          D
Sbjct: 324  RGARPGVTKEKRVKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELD 383

Query: 312  NPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVME 371
            + D   N+ + L G L+    +   ++ +++ +   Q  I + GK F+   LA IK    
Sbjct: 384  DRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFI-DRGKDFN-LELA-IK---- 436

Query: 372  KNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFA 431
               +K I   +   L TG    Q     Q RAG +    RL F   +S  R V+      
Sbjct: 437  ---TKIITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRD 492

Query: 432  GLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS 491
            G +    R+L    WG +CP  TP+G   GL+ ++     ++                + 
Sbjct: 493  G-KLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSP 540

Query: 492  ILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------ 545
            IL  L    M  +L ++  S       + ++G  VG+    + E+++A LR+L+      
Sbjct: 541  ILEFLEEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDII 597

Query: 546  VSAASVIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------------RNISLP 591
            VS  S+I D  D E+               ++T   +  RP+            R+I + 
Sbjct: 598  VSEVSMIRDIRDREI--------------RIYTDAGRICRPLLIVENGTLLLKKRHIEML 643

Query: 592  SEESQN------------IELIGPF-EQVFMEIRCPDGGDGGRRNAFPA--THEEIHPTG 636
             E   N            +E I    E+  M    P+     +  A+ +  TH EIHP  
Sbjct: 644  KEREYNNYGWQVLVASGVVEYIDTLEEETVMIAMSPEDLRQEKEYAYCSTYTHCEIHPAM 703

Query: 637  MLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTN 696
            +L V A++ P+ DHNQSPRN YQ  M KQ MG  +     R D   + L  P  P+V T 
Sbjct: 704  ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTR 763

Query: 697  TYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDG 756
            +       E P G N++VA+  YTGY+ ED++I+N S+V+RG      Y++       + 
Sbjct: 764  SMEYLRFRELPAGINSVVAIACYTGYNQEDSVIMNASAVERGFFRSVFYRSYK---DQES 820

Query: 757  NKVDRGQKLFRRNKDA------KSLHSVIDSDGL-----------PYVGQMIHPGEPYCS 799
             +V   ++ F +   A       +++  +D DG+             +G+ I   E    
Sbjct: 821  KRVGDQEEQFEKPTRATCQGMRNAIYDKLDDDGIIAPGVRVSGDDVVIGKTITLPENDDE 880

Query: 800  IYDKTTNSWRTNSR---KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSS 856
            +   T    + ++    + SE+  VD V + + NS+   +   IR R  R P IGDKF+S
Sbjct: 881  LEGTTKRFTKRDASTFLRNSETGIVDQVMITL-NSEGY-KFCKIRVRSVRIPQIGDKFAS 938

Query: 857  RHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKF 916
            RHGQKG C   +   DMPF+   G+ PD+IINPHA PSRMTI  L+E +  K  +  G+ 
Sbjct: 939  RHGQKGTCGIQYRQEDMPFT-CEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEI 997

Query: 917  MDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIF 976
             DATPF ++V               V ++  +L+  G+   G EV+Y+G  G ++  +IF
Sbjct: 998  GDATPFNDAVN--------------VQKISSLLQEYGYQLRGNEVMYNGHTGRKINAQIF 1043

Query: 977  IGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYL 1036
            +GP YYQRL+HMV DK   R+ G +  + RQP++GR R GG+RFGEMERD  +AHGAA  
Sbjct: 1044 LGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQF 1103

Query: 1037 LHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSK 1096
            L +RL   SD +   VC+ CG +  A   +                      C  C+   
Sbjct: 1104 LRERLFEVSDPYRIHVCNFCGLIAIANLRN------------------NTFECKGCKNKT 1145

Query: 1097 GMETVAMPYVFRYLAAELAAMNI 1119
             +  V +PY  + L  EL +MNI
Sbjct: 1146 QISQVRLPYAAKLLFQELMSMNI 1168


>gi|162606010|ref|XP_001713520.1| DNA-directed RNA polymerase II second largest subunit [Guillardia
            theta]
 gi|13794440|gb|AAK39815.1|AF165818_23 DNA-directed RNA polymerase II second largest subunit [Guillardia
            theta]
          Length = 1206

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 326/1217 (26%), Positives = 532/1217 (43%), Gaps = 196/1217 (16%)

Query: 19   HIESFDYMLDEGLSEMF--DHCRQAKISYTGKLMADVEFQYLDAGSPV------VRERFN 70
            H+    Y+ D+GL      +  R   ++Y+  L  ++    +     +        E+  
Sbjct: 77   HLSKPTYIEDDGLVHNLVPNEARLRNLTYSSPLYCEISTSIIKNEKSIDYILKQFSEKIL 136

Query: 71   FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERV--------FRSVILP 122
             G+ P+M+K++ C L   D + L +L E   + GGYFI+NG E+V        +  V + 
Sbjct: 137  IGRIPIMIKSKFCILSNLDIKCLKNLGECPDDPGGYFIVNGSEKVIVAQEQLSWNKVYIF 196

Query: 123  KQNYPMSMVRSSFRDRR---EGYTDKA------------------VVIRCVRKDQSSVTL 161
            ++N     +R++ + +    EGY   A                   V  C  KDQ     
Sbjct: 197  QKN---ENLRNTIKIKNYTVEGYLYFAECRSVADYSKWSPSLLTVKVCLCPYKDQKFSIF 253

Query: 162  KLYYLLNGSVRLGFWLQGKEYL----------LPVGIVLKALVDTNDLEIFNHLTCCYDE 211
            K     N       +L G  YL          +P+  + KAL   N++EI +++  CYD 
Sbjct: 254  KKNLKFNSP---EIFLSGGFYLRMMLPYFKKDIPITWIFKALGFENEIEILDYI--CYDS 308

Query: 212  KYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVA 271
            + +     V   +  +++    +      +  +   L  IG+H      G++ +  Y V 
Sbjct: 309  QDEDLISIVRYIVEDDKISTQNSLSISCPILDQETALAAIGQHVSKGPQGIRIKFAYEVL 368

Query: 272  ETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIY 331
            +     +I +       K     +++ KL S        D+ D    + +   G L++  
Sbjct: 369  QKEFLPHIGIGQGFELRKGYFFGYIINKLISTQIGKRKMDDRDHYGYKRLDTVGPLLSQL 428

Query: 332  LKEKLEDWLRKGKKLIQDEIENNGKKF---DFFNLANIKKVMEKNPSKQIGTSIETMLKT 388
             ++ L   L++ K  +Q +I    KKF   DFF             S  + T I+  L T
Sbjct: 429  FRQLLGKVLKEFKTNVQKKIHRLDKKFELKDFFK------------SNYVTTGIQYALST 476

Query: 389  GRLATQTGLDLQQ-RAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWG 447
            G   T    D Q  R G +    RL++   +S  R V+   S  G + T  R L    WG
Sbjct: 477  GNWGT----DKQSLRTGISQVLNRLSYSSTLSHLRRVN-SPSAKGNKITKPRHLHNSHWG 531

Query: 448  FLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS---ILRVLIGVGMIPS 504
            ++CPV TP+G  CGL+ ++  T  +               + TS   I+  L  +G+  S
Sbjct: 532  YICPVETPEGHSCGLVKNLALTAMIT--------------IGTSPLFIIEKLENLGL-ES 576

Query: 505  LPKLVKSGPPAVLSVLLDGRVVGV--IPSSEIEKVVAHLRRLKVSAA-SVIPDDLEVGYV 561
            L +       +   V ++G  +G    P + I K+  + RR   S   S+I DD +    
Sbjct: 577  LEEYNSDKLKSSFKVFVNGCWIGTHKNPFALISKMKIYRRRNIFSEEISIILDDYD---- 632

Query: 562  PLSLGGAYPGLYLFTSPPKFVRPVRNI----------------SLPSEESQNIELIGPFE 605
                      + +F+   + +RP+  I                +L  ++S         E
Sbjct: 633  --------KEIKIFSDSGRVIRPLLIINEENIIKINNKQKYLHNLTDDQSIYSNFQQLLE 684

Query: 606  QVFMEIRCPDGGDGGRRNAF--------------PATHEEIHPTGMLSVVANLTPYSDHN 651
            +  +E   P+  +    + F                TH E+HP+ +L V A+L P+ DHN
Sbjct: 685  EGILEYVDPEEEETCLISMFYNFKYLKNLHTQKIKYTHCELHPSVILGVCASLIPFCDHN 744

Query: 652  QSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTN 711
            QSPRN YQ  M KQ +G +V    FR D   + L  PQ P+V T +       ++P G N
Sbjct: 745  QSPRNTYQAAMGKQAIGINVSNYDFRMDTMCHILYYPQKPLVCTKSMNFIKFKDFPNGIN 804

Query: 712  AIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVDRGQKLFRRNK 770
            AIVA+  Y GY+ ED++I+++ S+DRG+     ++  + ++    G K +  +    ++ 
Sbjct: 805  AIVAIACYGGYNQEDSIIMSQDSIDRGLFRSFFFRNYKDVEKIKFGGKKETFEIPNWKSC 864

Query: 771  DAKSLHSV--IDSDGLPYVGQMIHPGE----PYC--SIYDKTTNSWR------------T 810
            +   +HS   +D DGL   G+ ++  +      C  +++D      R            +
Sbjct: 865  NGIKIHSYEKLDLDGLIGEGKKVNSNDIIIGKTCPTNLFDNNNEDLRLLGKNLKIKTDCS 924

Query: 811  NSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPD 870
            +S K  E+  VD V   +  S    +   IR R  R P IGDKF+SRHGQKG+   ++  
Sbjct: 925  SSIKNFETGVVDKVI--LAKSDEGFRLVKIRIRSVRLPQIGDKFASRHGQKGIIGMIYRQ 982

Query: 871  IDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTN 930
            ++MPFS   G+ PD+I+NPHA PSRMTI  LLE + +K  S+ G   D TPF        
Sbjct: 983  VNMPFSE-QGISPDIIMNPHAIPSRMTIGHLLECLLSKAVSMKGIEGDGTPF-------- 1033

Query: 931  GDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVS 990
                    +  ++++   L    F+ +G E+LY+G  G  +   IF+GP YYQ+L+HMV 
Sbjct: 1034 -------ERQNMEDIMNFLEKNNFDKNGWEILYNGFNGKRIKSLIFMGPTYYQKLKHMVE 1086

Query: 991  DKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVA 1050
            DK   R+ G +  +TRQP++GR R GG+RFGEMERD +++HGAA  L DRL   SD    
Sbjct: 1087 DKIHSRARGPIQILTRQPVEGRSREGGLRFGEMERDCMISHGAAIFLKDRLFDQSDPFGI 1146

Query: 1051 DVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYL 1110
             VC  CG ++ +                   +      C  C     +  + +PY F+ L
Sbjct: 1147 YVCDFCGFIVVSN------------------KKQNNFECRNCSNRSMISFIRIPYAFKLL 1188

Query: 1111 AAELAAMNIKITLQLGD 1127
              EL ++++ + L  G+
Sbjct: 1189 IQELMSLSVGVRLIPGE 1205


>gi|170591608|ref|XP_001900562.1| DNA-directed RNA polymerase II second largest subunit [Brugia malayi]
 gi|158592174|gb|EDP30776.1| DNA-directed RNA polymerase II second largest subunit, putative
            [Brugia malayi]
          Length = 1185

 Score =  375 bits (962), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 321/1157 (27%), Positives = 511/1157 (44%), Gaps = 160/1157 (13%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSP---VVRERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+      +G        E+   G+ P+ML++  C L     
Sbjct: 111  MPNEARLRNLTYSSPLYIDITKTMTRSGEEPKETKYEKVFVGKIPIMLRSSYCMLANMSD 170

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYF++NG E+V   +I  ++    ++   S +D +  YT K     
Sbjct: 171  RDLSELNECPLDPGGYFVINGSEKV---LIAQEKMATNTVYVFSMKDGK--YTYKTECRS 225

Query: 151  CVRKDQSSVTLKLYYLLNGSVRL---GFWLQ--------------GKEYL---------L 184
            C+  + S   LK Y+L    V       W+               G + +         +
Sbjct: 226  CL--ENSRQVLKQYFLSILEVTRPTSTLWVNMLPRGGGGSKKSAMGPKIIAILPYIKQEI 283

Query: 185  PVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTR 244
            PV IV +AL   +D +I  H+   +++           P + E VK  L E     +  +
Sbjct: 284  PVMIVFRALGFVSDHDILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQ 330

Query: 245  LQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKL 300
               L  IG   +    G+  E     A  +++  +  H+  ++     K   L +M+ +L
Sbjct: 331  NVALNFIGA--RGAKPGVTKEQRIKYAREILQKEMLPHVGISDFCETKKAYFLGYMVHRL 388

Query: 301  FSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDF 360
                      D+ D + N+ + L G L+    +    + L++ +   Q  I  NG   DF
Sbjct: 389  LLAALGRRELDDRDHMGNKRLDLAGPLLAFLFRALFRNLLKEVRLTAQKYINKNG---DF 445

Query: 361  FNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISF 420
                 +K  +       I   +   L TG    Q     Q RAG +    RL +   +S 
Sbjct: 446  MLDLCVKTPL-------ITRGLAYSLATGNWGDQKKAH-QSRAGVSQVLNRLTYTATLSH 497

Query: 421  FRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRG 480
             R  +      G +    R+L    WG +CP  TP+G+  GL+ ++         Y S G
Sbjct: 498  LRRCNSPIGREG-KLAKPRQLHNTQWGMVCPAETPEGQAVGLVKNLALMA-----YISVG 551

Query: 481  NIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAH 540
            ++ +       IL  L    M  +L ++  +       + ++G  VG+    + E+++  
Sbjct: 552  SLPE------PILEFLEEWSM-ENLEEVAPTAIADATKIFVNGAWVGI--HRDPEQLMTT 602

Query: 541  LRRLK------VSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEE 594
            L++L+      VS  S++ D  +      +  G      L     K     ++I    + 
Sbjct: 603  LKKLRREMDIIVSEVSMVRDIRDREIRIYTDAGRVCRPLLIVENQKLALKRKHIDQLKDN 662

Query: 595  SQN---------IELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVAN 643
            S           +ELI   E+  V + +   D   GG  + +  TH EIHP  +L V A+
Sbjct: 663  SYTWSELVAGGVVELIDAMEEETVMLAMMPEDLKAGGYCDTY--THCEIHPAMILGVCAS 720

Query: 644  LTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGI 703
            + P+ DHNQSPRN YQ  M KQ MG        R D   + L  PQ P+V T +      
Sbjct: 721  IIPFPDHNQSPRNTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRF 780

Query: 704  DEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQ 763
            +E P G NAIVA+L+YTGY+ ED++I+N+S +DRG+     Y++       + N  +  +
Sbjct: 781  NELPAGINAIVAILSYTGYNQEDSIIMNQSGIDRGLFRSVFYRSYR---DQEANLDNANE 837

Query: 764  KLFRRNKDAK------SLHSVIDSDGLPYVGQMIHPGE----PYCSIYD----------K 803
            +L  +    K      SL+  +D DG+   G  +   +       S+ D          +
Sbjct: 838  ELIEKPTRDKCSGMRHSLYDKLDEDGIISPGMRVSGDDVIIGKTISLPDTEDDLDAAIKR 897

Query: 804  TTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGV 863
             T    +   + SE+  VD V + +    N  +   IR R  R P IGDKF+SRHGQKG 
Sbjct: 898  YTKKDASTFLRSSETGIVDQVMLTLNTDGN--KFVKIRVRSVRLPQIGDKFASRHGQKGT 955

Query: 864  CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFA 923
               ++   DMPF+   G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF 
Sbjct: 956  MGMMYRQEDMPFTN-EGITPDIIINPHAVPSRMTIGHLIECLQGKLSANKGEIGDATPFN 1014

Query: 924  NSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQ 983
            ++V               V ++  +L+  G++  G E++Y+G  G +LT ++F+GP YYQ
Sbjct: 1015 DTVN--------------VQKISNLLQEYGYHLRGNEIMYNGHTGRKLTIQVFLGPTYYQ 1060

Query: 984  RLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHT 1043
            RL+HMV DK   R+ G +  + RQP++GR R GG+RFGEMERD  ++HGAA  L +RL  
Sbjct: 1061 RLKHMVDDKIHSRARGPVQMMNRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFE 1120

Query: 1044 CSD-YHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVA 1102
             SD YHV  +C+ CG ++ A                          C AC+    +    
Sbjct: 1121 VSDPYHVY-ICNNCGLIVVANL------------------RTNSFECKACRNKTQVSAFR 1161

Query: 1103 MPYVFRYLAAELAAMNI 1119
            +PY  + L  EL +M+I
Sbjct: 1162 IPYACKLLFQELMSMSI 1178


>gi|429217659|ref|YP_007175649.1| DNA-directed RNA polymerase subunit B [Caldisphaera lagunensis DSM
            15908]
 gi|429134188|gb|AFZ71200.1| DNA-directed RNA polymerase subunit B [Caldisphaera lagunensis DSM
            15908]
          Length = 1172

 Score =  375 bits (962), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 322/1146 (28%), Positives = 508/1146 (44%), Gaps = 164/1146 (14%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
              R   ++Y+G L   +E   ++ G+ + RE      FP+M+K+    +      +L++ 
Sbjct: 99   EARIRNLTYSGPLY--LEMALIENGNEIEREELKIADFPIMVKSVVDPISKYKEDELINK 156

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREG-YTDKAVVIRCVRKD 155
             E+  + GGYFI+NG ERV    I+ +++  ++ +            T  A V+  V   
Sbjct: 157  GEDPYDPGGYFIINGSERV----IVAQEDLAVNRIIVGLSTANTAKITHTAKVVSTVLGL 212

Query: 156  QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
            +  V +    + +G++ L     G  Y +P  +++KAL    D EI    +  +D   ++
Sbjct: 213  RRQVIVD--RMNDGTLELSMSRLG--YRIPFVVMMKALGLEKDAEI--AASVSFDSDIQR 266

Query: 216  EKGAVGSPLVSERVKIILAEVQDLSLT--TRLQCLQHIGEHFQPVIDGLQSESYYAVAET 273
            E               +L   + ++ T  T    L++IG    P   G   E   A AE 
Sbjct: 267  E---------------LLPSFEKVAFTIKTTEDALEYIGNRLAP---GQPREIRIARAED 308

Query: 274  VIRDYIFVHL----NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
             I +    HL     D   K   L  M  ++  L  +    D+ D   N+ + L G LI 
Sbjct: 309  FIDNQFLPHLGNKPEDRKKKAYFLGEMANRVLQLYLNKRGEDDKDHYSNKRLRLAGDLIA 368

Query: 330  IYLKEKLEDWLRKGKKLIQDEIENNGK-KFDFFNLANIKKVMEKNPSKQIGTSIETMLKT 388
               ++  + ++      +++ I    K +  F   ++I           I   I   L T
Sbjct: 369  EIFRDAFQQFVNTVSSQLEEYISQRKKLRLRFLVRSDI-----------ITERIRAALAT 417

Query: 389  GRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGF 448
            G          Q R G +   +R N++  +S  R V    S  G      R L    WG 
Sbjct: 418  GNWT-------QNRTGVSQALDRTNWISLLSHLRRVISPLS-RGQTHFEARDLHGTHWGR 469

Query: 449  LCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS-LPK 507
            LCP  TP+G  CGL+ ++     ++   D +   R        ++  +I +    + +  
Sbjct: 470  LCPFETPEGINCGLVKNLALMTYISVGVDEKEVERILRNQGVILMDEIIKMSSENNDITN 529

Query: 508  LVKSGPPAVLSVLLDGRVVGVIPS-SEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLG 566
            LV +G      V L+G  +G + +  E+ + +  +RR    +        EVG + L   
Sbjct: 530  LVNNGA----KVFLNGSPIGYVENGDELARKLRDMRRKGELS-------FEVG-ISLIKE 577

Query: 567  GAYPGLYLFTSPPKFVRP--VRNISLPSEESQNIELIGPFEQVF--------MEIRCPDG 616
            G    +Y+ T   + +RP  V +   P    + +  +   E  F        +E   PD 
Sbjct: 578  GNTNEVYINTDEGRLLRPLIVVDKGKPRLTKEMVSKVKNGELSFWDLVRMGVIEFIDPDE 637

Query: 617  GDGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQT 666
                  NA  A          TH E+  TG+  V A+  P+ +HNQSPRN YQ  MAKQ 
Sbjct: 638  ----EENAIVAERIEDINNDTTHLELWVTGIFGVAASTIPFLEHNQSPRNTYQSAMAKQA 693

Query: 667  MGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMED 726
            +G        R D   Y L  PQ PIV+T    + G ++ P+G N I+A +++TGY++ED
Sbjct: 694  LGLYALNYNLRVDSHGYLLHYPQRPIVQTRHLEEMGYNQRPSGQNFILAFMSFTGYNIED 753

Query: 727  AMILNKSSVDRGMCHGQIYQTETIDLSD-DGNKVDR----GQKLFRRNKDAKSLH----- 776
            A+I NK+S+D G+     ++      +D  G   DR      KL+    D   +      
Sbjct: 754  AIIFNKTSIDMGLGRAHFFRVYASTENDYPGGLSDRITVPSPKLYDHKGDQYYIKLGPDG 813

Query: 777  ------SVIDSDGL-------PYVGQ--MIHPGEPYCSIYDKTTNSWRTNSRKGSESVFV 821
                   V+  D L        ++G+  +I PG     +  K   S +    +  ES  V
Sbjct: 814  IVEPEAEVVGGDVLVGRESPPRFIGEERVIGPG-----VLSKRDTSVQL---RYGESGVV 865

Query: 822  DYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGM 881
            D V +   + +N  +   ++ R  R P +GDKF+SRHGQKGV   L+P  DMP++   G+
Sbjct: 866  DTVFITQTSERN--KLVKVKVRDLRIPELGDKFASRHGQKGVVGMLFPRYDMPYTE-DGI 922

Query: 882  RPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSL 941
             PD+I+NPH  PSRMT+  LLE V AK G+L GK++D TPF                K  
Sbjct: 923  TPDIIVNPHGIPSRMTVGQLLELVTAKAGALLGKYIDGTPFY---------------KED 967

Query: 942  VDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTM 1001
            ++ L  +L   GF+ +G EV+Y G  G  +   I IG  +YQRL HMVSDK   R+TG +
Sbjct: 968  INNLQLVLVKKGFDPNGKEVMYDGRTGRLIENTITIGIAFYQRLYHMVSDKMHARATGKV 1027

Query: 1002 DQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLT 1061
              +TRQP +G+ R GG+RFGEMERD L+ +GA  +L DR+   SD +V  VC+LCG +  
Sbjct: 1028 QLLTRQPTEGKARQGGLRFGEMERDCLVGYGATMMLRDRMLENSDLYVMHVCNLCGHIAW 1087

Query: 1062 ATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKI 1121
                +  KR I E              C     S  +  + +PY F+    E+ +M +K 
Sbjct: 1088 ----YNSKRGIYE--------------CPIHGDSGDIRPIKVPYAFKLFLQEIISMGVKP 1129

Query: 1122 TLQLGD 1127
             +++ D
Sbjct: 1130 EIKVSD 1135


>gi|432961296|ref|XP_004086596.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB2-like [Oryzias latipes]
          Length = 1120

 Score =  374 bits (961), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 317/1124 (28%), Positives = 501/1124 (44%), Gaps = 157/1124 (13%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   ++   ++   G+ P+ML++  C L G   
Sbjct: 109  MPNEARLRNLTYSAPLYVDITKTIIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLSGLTD 168

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   + +D +  YT  A    
Sbjct: 169  RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYT--AECRS 223

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + T+ +  +  G   +     G+  +         +P+ IV +AL   +D +
Sbjct: 224  CLEXSSRPTSTIWVSMMARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRD 283

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +D+           P + E VK  L E     +  +   L  IG   +    
Sbjct: 284  ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAKP 328

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     A+ V++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 329  GVTKERRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   ++ L++ +   Q  I + GK F+   LA IK       ++
Sbjct: 389  GNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQKFI-DRGKDFNL-ELA-IK-------TR 438

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   ++  L TG          Q RAG +    RL F   +S  R V+      G +  
Sbjct: 439  IISDGLKYSLATGNWGDVKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 496

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G   GL+ ++     ++                + IL  L
Sbjct: 497  KPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDL 556
                M  +L ++  +       + ++G  VG+    + E+++  LR+L+     ++ +DL
Sbjct: 546  EEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEDL 602

Query: 557  EVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDG 616
                V                       V  I    EE+           V + +   D 
Sbjct: 603  VASGV-----------------------VEYIDTLEEET-----------VMLAMTPDDL 628

Query: 617  GDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKF 676
             + G       TH EIHP+ +L V A++ P+ DHNQSPRN YQ  M KQ MG  +     
Sbjct: 629  QEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHV 688

Query: 677  RADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVD 736
            R D   + L  PQ P+V T +       E P G N+IVA+ +YTGY+ ED++I+N+S+VD
Sbjct: 689  RMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVD 748

Query: 737  RGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA-----KSLHSVIDSDGLPYVGQMI 791
            RG      Y++     S  G   D+ +   +  ++       +++  +D DGL   G  +
Sbjct: 749  RGFFRSVFYRSYKEQESKKG--FDQEEIFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRV 806

Query: 792  HPGEPY-----CSIYDKTTNSWRTNSR----------KGSESVFVDYVAVDMKNSKNLPQ 836
              GE        ++ +       TN R          + SE+  VD V V +       +
Sbjct: 807  S-GEDVIIGKTVTLPENDDELDSTNKRYTKRDCSTFLRTSETGIVDQVMVTLNQEGY--K 863

Query: 837  KANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRM 896
               IR R  R P IGDKF+SRHGQKG C   +   DMPF+   G+ PD+IINPHA PSRM
Sbjct: 864  FCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT-CEGITPDIIINPHAIPSRM 922

Query: 897  TIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNY 956
            T+  L+E +  K  +  G+  DATPF ++V               V ++  +L   G++ 
Sbjct: 923  TVGHLIECLQGKVSANKGEIGDATPFNDAVN--------------VQKVSNLLSEYGYHL 968

Query: 957  HGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGG 1016
             G EVLY+G  G +LT +IFIGP YYQRL+HMV DK   R+ G +  + RQP++GR R G
Sbjct: 969  RGNEVLYNGFTGRKLTSQIFIGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSRDG 1028

Query: 1017 GIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTA-TFIHPQKRAIREI 1075
            G+RFGEMERD  +AHGAA  L +RL   SD +   VC+LCG +  A T  H  +      
Sbjct: 1029 GLRFGEMERDCQIAHGAAQFLKERLFEASDPYQVHVCNLCGLMAIANTRTHTYE------ 1082

Query: 1076 GGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
                         C  C+    +  + MPY  + L  EL +M+I
Sbjct: 1083 -------------CRGCRNKTQISLIRMPYACKLLFQELMSMSI 1113


>gi|156087649|ref|XP_001611231.1| DNA-directed RNA polymerase, beta subunit [Babesia bovis T2Bo]
 gi|154798485|gb|EDO07663.1| DNA-directed RNA polymerase, beta subunit, putative [Babesia bovis]
          Length = 1171

 Score =  374 bits (961), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 328/1135 (28%), Positives = 513/1135 (45%), Gaps = 143/1135 (12%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGA-------DS 90
            CR   I+Y+  +  DVE+     G  V  +R   G+ PVML++  C L G        D+
Sbjct: 117  CRMRDITYSAPMYVDVEYY---NGEGVASKRVEIGRLPVMLRSCVCALSGGMRANGNVDN 173

Query: 91   QKLVS-LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
             +L S L E   + GGYFI+ G+E+V   +++ +Q     ++  +  D ++         
Sbjct: 174  FELSSRLGECPYDPGGYFIIKGVEKV---ILMQEQLSKCRVIVET--DVKKNICATVTSA 228

Query: 150  RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
                K +++V  K   L    VR   +       +P+ I+LKA+  T D EI   +    
Sbjct: 229  TAESKSRTAVVYKNQKLY---VRHNSFTDD----VPLCIILKAMGVTTDEEIAQLIGTAG 281

Query: 210  DEKYKKEKGAVGSPLVSERVKIILAEVQDL---SLTTRLQCLQHIGEHFQP--VIDGLQS 264
              +Y    G              +  ++DL    + TR+  L ++G   +P  +  G  +
Sbjct: 282  AREYLPTGGDY------------ILSIEDLYNEGINTRMDALLYVGRKVRPRPLAKGFFT 329

Query: 265  ESYYAVAET----------VIRDYIFVHL-----NDNNDKFNLLIFMLQKLFSLVDHTSV 309
             S   + +T          ++   +  H+      D + K   L  M +++ S+      
Sbjct: 330  SSKERLPKTNQNLIEDTHDILTRVLLSHIPMRNCRDFSGKIKSLCLMARRVLSVASGKEP 389

Query: 310  SDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQD------EIENNGKKFDFFNL 363
             D+ D   N+ + L G LI+I  ++  + +L + KK I        EI +N    +    
Sbjct: 390  MDDKDHYGNKRLELAGQLISILFEDLFKAFLGQLKKQIDATLTRHYEIVSNCHGGE---Q 446

Query: 364  ANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRA 423
            A     +   P+  I   ++  + TG    +      +R+G +    RL+++  +     
Sbjct: 447  AKYPDCLVSLPTDIITRGMQATISTGNWNIKRFR--IERSGVSQILSRLSYISCLGMMTK 504

Query: 424  VHRGASF-AGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNI 482
             +  + F  G + +  R L P   G +CP  TP+GE CGL+ +++    + ++  + G+I
Sbjct: 505  TN--SQFEKGRKVSKPRALQPSQLGLICPCDTPEGESCGLVKNLS----LMNHVTTDGDI 558

Query: 483  RDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSE--IEKVVAH 540
                  R   L   +GV    +L           ++V L+G ++GV  + +  I+ VVA 
Sbjct: 559  E-----RLVELLYWLGVESADALSARDCFDDDRNVTVFLNGIIIGVHQNGKQLIKDVVAL 613

Query: 541  LRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIEL 600
             RR K+SA   + ++ +   V +S  G          P   V   + +  P   SQ +E 
Sbjct: 614  RRRGKISAFVSVFENYQQREVHISSDGGR-----LCRPLIVVENGKPLLTPKVLSQLVEG 668

Query: 601  IGPFEQVFMEIRCPDGGDGGRRNAF----------PATHEEIHPTGMLSVVANLTPYSDH 650
              P  ++F              N              TH EI P  ML VVA L P+ +H
Sbjct: 669  QIPLSKLFASGVLEWIDVNEENNTLIVMRESDITPKTTHLEISPMSMLGVVAGLIPFPNH 728

Query: 651  NQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGT 710
            NQSPRN YQC M KQ++G        R D  L+ +  PQ P+V T        D+ P G 
Sbjct: 729  NQSPRNTYQCAMGKQSIGSIGYNQLNRCDTILHLMVYPQRPLVTTKAIQLVNFDKLPAGQ 788

Query: 711  NAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNK 770
            N IVAV++Y GY++EDA+++NK+S +RG       +  T+++    +  +R   L  R +
Sbjct: 789  NVIVAVMSYQGYEIEDAVVINKASSERGFSRCYSLRRVTVEIEKLNHAAERPGGLNNRPQ 848

Query: 771  DAKSLHSVID--SDGLPYVGQMIHPGEPYCSIYDKT-TNSWRTNSRK--GSESVFVDYVA 825
               ++  V D   D +  VGQ +   +       +T T   +    K   ++  +VD V 
Sbjct: 849  -ITNVTPVDDLTGDSVIGVGQKVKKDDTLLKKLTQTSTGQIKVTDIKYQFNQPAYVDRVM 907

Query: 826  VDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDL 885
                 ++++  K  I  R  R P IGDK+SSRHGQKGV   +    ++PFS   G  PDL
Sbjct: 908  CITTIAESVMYK--IMLRQVRLPEIGDKYSSRHGQKGVVGLIESQENLPFSE-HGWVPDL 964

Query: 886  IINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDEL 945
            I+NPH FPSRMT+  +LE VAAK   L+G F D TPF         D+     +SL+ + 
Sbjct: 965  IMNPHGFPSRMTVGKMLELVAAKAAVLNGIFEDGTPF-------EADSLPAIERSLIKK- 1016

Query: 946  GEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQIT 1005
                   GF+  G E+LYSG+ G  L   IF GP+YYQ+L+HMVSDK   R+ G    +T
Sbjct: 1017 -------GFHPAGKEILYSGITGEPLETLIFTGPMYYQKLKHMVSDKIHARAVGPRQSLT 1069

Query: 1006 RQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFI 1065
            RQP +GR + GG+R GEMERD L+A+GA+ LL +RL   SD    DVC  CG +    + 
Sbjct: 1070 RQPTEGRSKDGGLRLGEMERDCLIAYGASGLLVERLMLSSDVFQMDVCHQCGFIGYDGW- 1128

Query: 1066 HPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIK 1120
                                   C  C+      TVA+PY  + L  EL AMNI+
Sbjct: 1129 -----------------------CAYCKQRGQTATVAIPYACKLLFQELQAMNIR 1160


>gi|324120666|dbj|BAJ78724.1| RNA polymerase II second largest subunit [Chrysoperla nipponensis]
          Length = 1175

 Score =  374 bits (961), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 322/1142 (28%), Positives = 511/1142 (44%), Gaps = 138/1142 (12%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGS-PVV--RERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G  P+V   ++   G+ P+ML++  C L     
Sbjct: 109  MPNEARLRNLTYSAPLYVDITKTIVKEGEEPIVTQHQKTFIGKIPIMLRSSFCLLSKLTD 168

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  Y  K+ +  
Sbjct: 169  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGK--YAFKSEIRS 223

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  +  G   +     G+  +         +P+ IV +AL    D +
Sbjct: 224  CLEHSSRPTSTLWVNMMARGGQSIKKAAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 283

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +D+           P + E VK  L E     +  +   L  IG   +    
Sbjct: 284  ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RGARP 328

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     A  +++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 329  GVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   ++ +++ +   Q  I + GK F+  +LA IK       +K
Sbjct: 389  GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFI-DRGKDFNL-DLA-IK-------TK 438

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   +   L TG    Q     Q RAG +    RL F   +S  R V+      G +  
Sbjct: 439  MITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 496

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G   GL+ ++     ++                + IL  L
Sbjct: 497  KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  S       + ++G  VG+    + E+++A LR+L+      VS  S
Sbjct: 546  EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVSEVS 602

Query: 551  VIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN----------- 597
            +I D  D E+  +    G     L +  +    ++      L   E  N           
Sbjct: 603  MIRDIRDREI-RIYTDAGRISRPLIIVENGSLLLKKSHIDMLKDREYNNYGWQGLVGSGV 661

Query: 598  IELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQSP 654
            +E I   E+   M    PD     +  A+ +T  H EIHP  +L + A++ P+ DHNQSP
Sbjct: 662  VEYIDTLEEETTMIAISPDDLRNSKEYAYCSTYTHCEIHPAMILGICASIIPFPDHNQSP 721

Query: 655  RNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIV 714
            RN YQ  M KQ MG  +     R D   + L  P  P+V T +       E P G N+IV
Sbjct: 722  RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIV 781

Query: 715  AVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD-GNKVDRGQKLFRRNKDA- 772
            A+L YTGY+ ED++ILN S+V+RG      Y++     S   G + ++ +K  R+     
Sbjct: 782  AILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKRIGEQEEQFEKPTRQTCSGM 841

Query: 773  -KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSR---KGSE 817
              +L+  +D DG+             +G+ +   E    +   T    + ++    + SE
Sbjct: 842  RHALYDKLDDDGIISPGVRVSGDDVVIGKTMTLPENEDELEGTTKRYTKRDASTFLRNSE 901

Query: 818  SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
            +  VD V + + NS+   +   IR R  R P IGDKF+SRHGQKG C   +   DMPF+ 
Sbjct: 902  TGVVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT- 958

Query: 878  VTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDE 937
              G+ PD+IINPHA PSRMTI  L+E +  K  S  G+  DATPF ++V           
Sbjct: 959  CEGLTPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVN---------- 1008

Query: 938  SKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRS 997
                V ++  +L+  G+   G EV+Y+G  G ++  ++F GP YYQRL+HMV DK   R+
Sbjct: 1009 ----VQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQVFFGPTYYQRLKHMVDDKIHSRA 1064

Query: 998  TGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCG 1057
             G +  + RQP +GR R GG+RFGEMERD  ++HGAA  L +RL   SD +   VC+ CG
Sbjct: 1065 RGPLQILVRQPSEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCG 1124

Query: 1058 SVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAM 1117
             +  A   +                      C  C+    +  V +PY  + L  EL +M
Sbjct: 1125 LIAIANLRN------------------NTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 1166

Query: 1118 NI 1119
            NI
Sbjct: 1167 NI 1168


>gi|171186405|ref|YP_001795324.1| DNA-directed RNA polymerase subunit B [Pyrobaculum neutrophilum
            V24Sta]
 gi|170935617|gb|ACB40878.1| RNA polymerase Rpb2 domain 6 [Pyrobaculum neutrophilum V24Sta]
          Length = 1127

 Score =  374 bits (961), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 330/1126 (29%), Positives = 512/1126 (45%), Gaps = 177/1126 (15%)

Query: 57   YLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVF 116
            Y+D   P V E F  G+ P+M+K++RC+L      + +   E+  + GGYFI+NG ERV 
Sbjct: 117  YVD-DEPYVTETFYIGELPIMVKSKRCNLTRLRPGEYIKKFEDPQDFGGYFIINGSERV- 174

Query: 117  RSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLK--LYYLLNGSVRLG 174
               I+ +++    +      DR     DK  V    +   + +  +  L   LN    + 
Sbjct: 175  ---IISQEDL---VADRPIYDR----GDKPSVKYIAKTISTGIGYRSTLTVELNRDGVIY 224

Query: 175  FWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILA 234
              L      +P  I +KAL    D ++   ++   D + +KE   + S + + ++ I   
Sbjct: 225  VTLSAMPVKIPFPIYMKALGLETDEDVVKAVSD--DPEIQKE--LLPSLIAANQIAI--- 277

Query: 235  EVQDLSLTTRLQCLQHIGEHF---QPVIDGLQSESYYAVAETVIRDYIFVHLNDNN---- 287
                    TR   L  IG      QP    ++ E  Y + +     Y   HL        
Sbjct: 278  --------TREDALDFIGGKVAVGQP--KPIRVEKAYQLLDK----YFLPHLGTTTPDEK 323

Query: 288  -------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWL 340
                    K  +L  +++ L  L       D+ D + N+ + L G L+T   +  L+ +L
Sbjct: 324  RQQEIRLKKALMLGQIVKGLVELQLGRRKPDDKDHVANKRVRLVGDLMTQLFRTVLKQFL 383

Query: 341  RKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQ 400
            ++ K  ++           ++    I       P  Q     + + +  R A  TG  + 
Sbjct: 384  QELKSQLEK----------YYARGRI-------PHIQTIVRPDIITERVRQALATGNWVG 426

Query: 401  QRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT---SVRKLLPESWGFLCPVHTPDG 457
             + G +   +R N++  +S+ R V    S    RT      R L P  WG LC V TP+G
Sbjct: 427  GKTGVSQILDRTNYMSTLSYLRRVVSSLS----RTQPHFEARDLHPTQWGRLCAVETPEG 482

Query: 458  EPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAV- 516
            +  GL+ ++     + +  D              + ++L  +G++P    L+K+    + 
Sbjct: 483  QNVGLVKNLALLAEITTGVDE-----------GEVEQLLYNLGVVP----LLKAREEGIR 527

Query: 517  -LSVLLDGRVVGVIPS-SEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL-----GGAY 569
               V ++GR++GV P+  E+ K V  +RR        I D++ + Y+  S+     GG  
Sbjct: 528  GAEVYINGRLIGVHPNPEELAKTVRGMRR-----QGKISDEINIAYLDGSVYVNCDGGRI 582

Query: 570  PGLYLFTS------PPKFVRPVRNISLPSEESQN---IELIGPFEQVFMEIRC-PDGGDG 619
                L           + V  VR   L  ++      IE +   E+    I   PD    
Sbjct: 583  RRPLLVVEGGRLKLTKEIVEKVRRGDLTWDDLVKMGVIEYLDADEEENAHIAVDPD---- 638

Query: 620  GRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRAD 679
               +    TH EI P+ +L  V ++ PY +HNQSPRN Y+  MAKQ++G       ++ D
Sbjct: 639  --VDLSNYTHVEIVPSSILGAVGSIIPYLEHNQSPRNQYEAAMAKQSLGLPQSNFLYKLD 696

Query: 680  QKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGM 739
             + + L  P+ PIV T      G    P G NA+VA+L YTGY++EDA+ILNK+SV+RGM
Sbjct: 697  SRGHMLYYPERPIVTTRGLELVGYSRRPAGQNAVVALLTYTGYNIEDAVILNKASVERGM 756

Query: 740  CHGQIYQT-------------ETIDLSDDGNKVDRGQKLFRR-NKDAKSLHSVIDSDGLP 785
                 Y+T             + I++ D   K  RG + +   ++D  +   V  S    
Sbjct: 757  FRSVFYRTYETEEQKYPGGEEDKIEIPDSSVKGYRGPEAYSHLDEDGIAPPEVYVSSNEV 816

Query: 786  YVGQMIHPGEPYCSIYDKTTNSWRTNS----RKGSESVFVDYVAVDMKNSKNLPQKANIR 841
             VG+   P   Y ++  +     R ++    R+G + + VD V +      N  +   +R
Sbjct: 817  LVGKT-SPPRFYTTLEAERILKERRDASVAVRRGEKGI-VDRVIITESPEGN--KLVKVR 872

Query: 842  FRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAML 901
             R  R P +GDKF+SRHGQKGV   L    DMPF+   G+ PD+I+NPHA PSRMT+A L
Sbjct: 873  LRELRVPELGDKFASRHGQKGVVGMLLRHEDMPFTE-DGIVPDIIVNPHALPSRMTVAQL 931

Query: 902  LESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEV 961
            LES+A K G+  G  +DAT F           G  E     ++L ++L   G+ + G EV
Sbjct: 932  LESMAGKVGASLGALVDATAFE----------GVKE-----EDLRKLLLKLGYKWDGKEV 976

Query: 962  LYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFG 1021
            +YSG+ G  L  +IFIG VYYQ+L HMV+DK   R+ G +  +TRQP +GR R GG+R G
Sbjct: 977  MYSGITGERLVADIFIGVVYYQKLHHMVADKIHARARGPVQILTRQPTEGRSREGGLRLG 1036

Query: 1022 EMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCG--SVLTATFIHPQKRAIREIGGLP 1079
            EMERD L+AHGA+ LL++RL   SD +   VC LCG  + L A    P+           
Sbjct: 1037 EMERDVLIAHGASALLYERLVESSDKYTMYVCELCGLPAYLDAKSNKPK----------- 1085

Query: 1080 PARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
                     C     +     V +PY ++ L  EL A+ I   L+L
Sbjct: 1086 ---------CPIHGDTGQFAKVVVPYAYKLLLQELIALGIYPKLEL 1122


>gi|324120652|dbj|BAJ78717.1| RNA polymerase II second largest subunit [Bemisia tabaci]
          Length = 1176

 Score =  374 bits (961), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 322/1144 (28%), Positives = 512/1144 (44%), Gaps = 142/1144 (12%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYL-DAGSPVV--RERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    + D   PVV   E+   G+ P+ML++  C L G   
Sbjct: 109  MPNEARLRNLTYSAPLYVDITKTVIKDGQEPVVTEHEKSFIGKIPIMLRSTFCLLSGLTD 168

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  Y  KA +  
Sbjct: 169  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKYAY--KAEIRS 223

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  +  G   +     G+  +         +P+ IV +AL    D +
Sbjct: 224  CLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 283

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +D+           P + E VK  L E     +  +   L  IG   +    
Sbjct: 284  ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RGARP 328

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  +     A  +++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 329  GVTKDKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   ++ +++ +   Q  I + GK F+   LA IK       +K
Sbjct: 389  GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFI-DRGKDFNM-ELA-IK-------TK 438

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   +   L TG    Q     Q RAG +    RL F   +S  R V+      G +  
Sbjct: 439  IITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 496

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G   GL+ ++     ++                + IL  L
Sbjct: 497  KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  S       + ++G  VG+    + E+++  LR+L+      VS  S
Sbjct: 546  EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMGTLRKLRRQMDIIVSEVS 602

Query: 551  VIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN----------- 597
            +I D  D E+  +    G     L +  +    ++     +L   +  N           
Sbjct: 603  IIRDIRDREI-RIYTDAGRICRPLLIVENQTLLLKRSHVDNLKQRDYNNYKWQELVSSGV 661

Query: 598  IELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQSP 654
            +E I   E+   M    P+     +  A+  T  H EIHP  +L V A++ P+ DHNQSP
Sbjct: 662  VEYIDTLEEETTMIAMSPEDLRQDKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSP 721

Query: 655  RNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIV 714
            RN YQ  M KQ MG  +     R D   + L  P  P+V T +       E P G N+IV
Sbjct: 722  RNTYQSAMGKQAMGVYITNYHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIV 781

Query: 715  AVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA-- 772
            A+L YTGY+ ED++ILN S+V+RG      +++     S+     D+ ++  + N+    
Sbjct: 782  AILCYTGYNQEDSVILNASAVERGFFRSVFFRS--YKDSESKRIGDQEEQFEKPNRSTCQ 839

Query: 773  ---KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSR---KG 815
                +++  +D DG+             +G+ I   E    +   T    + ++    + 
Sbjct: 840  GMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENDDELEGTTKRYSKRDASTFLRN 899

Query: 816  SESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPF 875
            SE+  VD V + + NS+   +   IR R  R P IGDKF+SRHGQKG C   +   DMPF
Sbjct: 900  SETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPF 957

Query: 876  SGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGT 935
            +   G+ PD+IINPHA PSRMTI  L+E +  K  S  G+  DATPF ++V         
Sbjct: 958  T-CEGLAPDIIINPHAIPSRMTIGHLIECLQGKVSSNKGEIGDATPFNDAVN-------- 1008

Query: 936  DESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQV 995
                  V ++  +L+  G+   G EV+Y+G  G ++  ++F+GP YYQRL+HMV DK   
Sbjct: 1009 ------VQKISTLLQEYGYQLRGNEVMYNGHSGRKINAQVFLGPTYYQRLKHMVDDKIHS 1062

Query: 996  RSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSL 1055
            R+ G +  + RQP++GR R GG+RFGEMERD  ++HGAA  L +RL   SD +   VC+ 
Sbjct: 1063 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNY 1122

Query: 1056 CGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELA 1115
            CG +  A   +                      C  C+    +  V +PY  + L  EL 
Sbjct: 1123 CGLIAIANLRN------------------NTFECKGCKNKTQISQVRLPYAAKLLFQELM 1164

Query: 1116 AMNI 1119
            AMNI
Sbjct: 1165 AMNI 1168


>gi|324120650|dbj|BAJ78716.1| RNA polymerase II second largest subunit [Anacanthocoris striicornis]
          Length = 1175

 Score =  374 bits (961), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 317/1141 (27%), Positives = 508/1141 (44%), Gaps = 136/1141 (11%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN---FGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   +  +      G+ P+ML++  C L G   
Sbjct: 109  MPNEARLRNLTYSAPLYVDITKTIIREGEEPIESQHQKSFIGKIPIMLRSTYCLLNGLTD 168

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  Y  KA +  
Sbjct: 169  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKFAY--KAEIRS 223

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  +  G   +     G+  +         +P+ IV +AL    D +
Sbjct: 224  CLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 283

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +D+           P + E VK  L E     +  +   L  IG   +    
Sbjct: 284  ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RGARP 328

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     A  +++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 329  GVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   ++ +++ +   Q  I + GK F+   LA IK       +K
Sbjct: 389  GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFI-DRGKDFNL-ELA-IK-------TK 438

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   +   L TG    Q     Q RAG +    RL F   +S  R V+      G +  
Sbjct: 439  IITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 496

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G   GL+ ++     ++                + IL  L
Sbjct: 497  KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  S       + ++G  VG+    + E+++  LR+L+      VS  S
Sbjct: 546  EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMGTLRKLRRQMDIIVSEVS 602

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
            +I D  +      +  G      L     + +   R+I    E   N            +
Sbjct: 603  IIRDIRDREIRIYTDAGRICRPLLIVENGQLLLKKRHIENLKERDYNNYGWQVLVSSGVV 662

Query: 599  ELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQSPR 655
            E I   E+   M    P+     +  A+  T  H EIHP  +L V A++ P+ DHNQSPR
Sbjct: 663  EYIDTLEEETTMIAISPEDLRQDKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPR 722

Query: 656  NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
            N YQ  M KQ MG  +     R D   + L  P  P+V T +       E P G N+IVA
Sbjct: 723  NTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVA 782

Query: 716  VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVDRGQKLFRRNKDA-- 772
            +  YTGY+ ED++ILN S+V+RG      +++ +  +    G++ ++ +K  R+      
Sbjct: 783  IACYTGYNQEDSVILNASAVERGFFRSVFFRSYKDAESKRVGDQEEQFEKPMRQTCQGMR 842

Query: 773  KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSR---KGSES 818
             +++  +D DG+             +G+ I   E    +   T    + ++    + SE+
Sbjct: 843  NAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENDDELEGTTKKFTKRDASTFLRNSET 902

Query: 819  VFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGV 878
              VD V + + N++   +   IR R  R P IGDKF+SRHGQKG C   +   DMPF+  
Sbjct: 903  GIVDQVMLTL-NAEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT-C 959

Query: 879  TGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDES 938
             G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF ++V            
Sbjct: 960  EGLSPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVN----------- 1008

Query: 939  KSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRST 998
               V ++  +L+  G+   G EV+Y+G  G ++  +IF+GP YYQRL+HMV DK   R+ 
Sbjct: 1009 ---VQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHSRAR 1065

Query: 999  GTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGS 1058
            G +  + RQP++GR R GG+RFGEMERD  ++HGAA  L +RL   SD +   VC+LCG 
Sbjct: 1066 GPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNLCGL 1125

Query: 1059 VLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMN 1118
            +  A   +                      C  C+    +  V +PY  + L  EL +MN
Sbjct: 1126 IAIANLRN------------------NTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 1167

Query: 1119 I 1119
            I
Sbjct: 1168 I 1168


>gi|347970296|ref|XP_313416.4| AGAP003648-PA [Anopheles gambiae str. PEST]
 gi|333468866|gb|EAA08858.4| AGAP003648-PA [Anopheles gambiae str. PEST]
          Length = 1175

 Score =  374 bits (960), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 331/1148 (28%), Positives = 514/1148 (44%), Gaps = 150/1148 (13%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    L  G   V    ++   G+ P+ML++  C L     
Sbjct: 109  MPNEARLRNLTYSAPLYVDITKTKLVEGQDPVETQHQKTFIGKIPIMLRSTYCLLSQLTD 168

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  Y  K  +  
Sbjct: 169  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKYAY--KTEIRS 223

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  +  G   +     G+  +         +P+ IV +AL    D +
Sbjct: 224  CLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRVIAILPYVKQEIPIMIVFRALGFVADRD 283

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAE---VQDLSLTTRLQCLQHIGEHFQP 257
            I  H+   +D+           P + E VK  L E   VQ+ ++      L  IG   + 
Sbjct: 284  ILEHIIYDFDD-----------PEMMEMVKPSLDEAFVVQEQNVA-----LNFIGA--RG 325

Query: 258  VIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNP 313
               G+  +     A+ +++  +  H+  ++     K   L +M+ +L          D+ 
Sbjct: 326  ARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDR 385

Query: 314  DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKN 373
            D   N+ + L G L+    +   ++ +++ +   Q  I+  GK F+   LA IK      
Sbjct: 386  DHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDR-GKDFNL-ELA-IK------ 436

Query: 374  PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
             +K I   +   L TG    Q     Q RAG +    RL F   +S  R V+      G 
Sbjct: 437  -TKIITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG- 493

Query: 434  RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
            +    R+L    WG +CP  TP+G   GL+ ++     ++                + IL
Sbjct: 494  KLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPIL 542

Query: 494  RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VS 547
              L    M  +L ++  S       + ++G  VG+    + E+++A LR+L+      VS
Sbjct: 543  EFLEEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVS 599

Query: 548  AASVIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN-------- 597
              S+I D  D E+  +    G     L +  +    +R      L   +  N        
Sbjct: 600  EVSMIRDIRDREI-RIYTDAGRICRPLLIVENGSLLLRKNHIDMLKDRDYNNYGWQVLVA 658

Query: 598  ---IELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHN 651
               +E I   E+   M    P      +  A+  T  H EIHP  +L V A++ P+ DHN
Sbjct: 659  SGVVEYIDTLEEETVMIAMTPYDLKQDKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHN 718

Query: 652  QSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTN 711
            QSPRN YQ  M KQ MG  +     R D   + L  P  P+V T +       E P G N
Sbjct: 719  QSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGIN 778

Query: 712  AIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD-GNKVDRGQKLFRRNK 770
            +IVA+L YTGY+ ED++ILN S+V+RG      Y++     S   G++ ++ +K  R+  
Sbjct: 779  SIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKRIGDQEEQFEKPNRQTC 838

Query: 771  DA--KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGS- 816
                 +L+  +D DG+             +G+ I   E    + D TT   R   R GS 
Sbjct: 839  QGMRNALYDKLDEDGIIAPGLRVSGDDVVIGKTITLPETDDDL-DGTTK--RYTKRDGST 895

Query: 817  -----ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDI 871
                 E+  VD V + + NS+   +   IR R  R P IGDKF+SRHGQKG C   +   
Sbjct: 896  FLRNSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQE 953

Query: 872  DMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNG 931
            DMPF+   G+ PD+IINPHA PSRMTI  L+E +  K GS  G+  DATPF ++V     
Sbjct: 954  DMPFT-CEGITPDIIINPHAIPSRMTIGHLIECIQGKLGSNKGEIGDATPFNDAVN---- 1008

Query: 932  DTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSD 991
                      V ++   L+  G++  G EV+Y+G  G ++  ++F+GP YYQRL+HMV D
Sbjct: 1009 ----------VQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDD 1058

Query: 992  KFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVAD 1051
            K   R+ G +  + RQP++GR R GG+RFGEMERD  ++HGAA  L +RL   SD +   
Sbjct: 1059 KIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIH 1118

Query: 1052 VCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLA 1111
            VC+ CG +  A   +                      C  C+    +  V +PY  + L 
Sbjct: 1119 VCNFCGLIAIANLRN------------------NTFECKGCKNKTQISQVKLPYAAKLLF 1160

Query: 1112 AELAAMNI 1119
             EL AMNI
Sbjct: 1161 QELMAMNI 1168


>gi|403224032|dbj|BAM42162.1| DNA-directed RNA polymerase [Theileria orientalis strain Shintoku]
          Length = 1189

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 312/1124 (27%), Positives = 507/1124 (45%), Gaps = 118/1124 (10%)

Query: 39   RQAKISYTGKLMADVEFQ-YLDAGSPVVRE------RFNFGQFPVMLKTRRCHLQGADSQ 91
            R   ++Y  ++  D+E Q +L+    +V+       R    + P+MLK+  C  +G    
Sbjct: 150  RLRNLTYASQVYIDIEQQTFLNEEGNLVQTDSTVYPRVPLCRIPMMLKSAYCWTKGLTEH 209

Query: 92   KLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC 151
             L  + E   + GGYF++NG ERV     L  Q    +     F  + + Y+  A  +R 
Sbjct: 210  DLSDIGECVFDQGGYFVVNGGERV-----LIAQERMANNFVYVFNKKNQKYSAVAQ-LRS 263

Query: 152  VRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---LPVGIVLKALVDTNDLEIFNHLTCC 208
                   VT     +LN  +     L    Y+   +PV I+ +AL   +D +I   +   
Sbjct: 264  QPDFSQGVTSFSIMILNSQLAKNKMLAALPYVKGDVPVPILFRALGCISDRDILQRIVYD 323

Query: 209  YDEKYKKEKGAVGSPLVSERVKIILAEVQDLS-LTTRLQCLQHIGEHFQPVIDGLQSESY 267
            + +              ++ + ++ + +++ S  T++ QCL +IG+    V   L++   
Sbjct: 324  FSD--------------TQMLSLMRSTLEECSEYTSQEQCLDYIGKRGPTVGAPLEARIQ 369

Query: 268  YAVAETVIRDYIFVHLN----DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILL 323
            YA  + ++R +   H+       + K   + +M+ +L          D+ +    + + L
Sbjct: 370  YA--KDLLRRHFLPHVGTEVGSESKKCFYVGYMIHRLLLNQLGRINEDDREHFGKKRLDL 427

Query: 324  PGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIE 383
             G L+            +  KKL+Q++I++ G+ FD      IK         QI   ++
Sbjct: 428  AGALMASSFGALFRKLAKDVKKLLQNQIDS-GRSFDV--AGAIKSC------SQITQGLQ 478

Query: 384  TMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLP 443
              L TG        ++  R G +    RL F  ++S  R ++      G +    R+L  
Sbjct: 479  YQLLTGNWGRDKEGNVV-RTGVSQVLNRLTFASYLSHLRRLNTPLGREG-KMAKPRQLHN 536

Query: 444  ESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP 503
              WG +CP  TP+G+  GL+ ++   C ++              M ++IL  L+  GM  
Sbjct: 537  THWGMICPAETPEGQAVGLVKNLALMCYIS-----------VGSMTSTILDFLLEFGM-D 584

Query: 504  SLPKLVKSGPPAVLSVLLDGRVVGVI--PSSEIEKVVAHLRRLKVSAASVIPDDLEVGYV 561
            SL ++        + + L+G  +GV   P + +  ++   R+  +S+ + I  D+    +
Sbjct: 585  SLDEISPVLIKDRVKIFLNGTWIGVFNQPDALVNLLLELRRKGNISSETSIVRDILSNEI 644

Query: 562  PL--SLGGAYPGLYLFTSPPKFVRPVRNISLPSE--------ESQNIELIG-PFEQVFME 610
             +    G +   LY+  +    +     + + +         ES  +E I    E++ M 
Sbjct: 645  KIFTDSGRSMRPLYIVENNRLLITKRHALMIENNQLNWSGLLESGVVEYIDCEEEEICMI 704

Query: 611  IRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFS 670
               PD            TH EIHP+ +L V A++ P+ D NQSPRN YQ  M KQ MG  
Sbjct: 705  AMFPDDLINNNNYCNSYTHCEIHPSMILGVCASIIPFPDQNQSPRNTYQSAMGKQAMGVY 764

Query: 671  VQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMIL 730
                  R D   + L  PQ P+V T +       E P G N+IVA++ YTGY+ ED++I+
Sbjct: 765  STNYNLRMDTLSHVLYYPQKPLVCTRSMEFLRFRELPAGINSIVAIMCYTGYNQEDSLIM 824

Query: 731  NKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSL----HSVIDSDGLPY 786
            N+SS+DRG+      +T + +    G+ V           +  +L    +S +D+DGL  
Sbjct: 825  NQSSIDRGLFRSVFNRTYSSEEKYLGSTVIESFTKPTATSNFLNLKRGDYSKLDNDGLIE 884

Query: 787  VGQMIHPGEPYCSIYDKTTNSWRTNS--RKGSESVFVDYVAVDMKNSKNLPQKANIRFRH 844
             G    P  P    Y    N     S   + +E+  VD V + + N     +   ++ R 
Sbjct: 885  PGSRSDPNNPN---YPAEMNLRMDCSCCLRPNENGVVDNVLLTVNNKG--CKFTKVKVRS 939

Query: 845  TRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLES 904
             R P IGDKF+SRHGQKG     +   D+PF+   G+ PD+I+NPHA PSRMTI  L+E 
Sbjct: 940  VRVPQIGDKFASRHGQKGTIGMTFRMEDLPFT-CEGIVPDIIMNPHAVPSRMTIGHLIEC 998

Query: 905  VAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYS 964
            +  K G+L G   DATPF               SK  ++++   L  C ++ +G E  ++
Sbjct: 999  LLGKVGALVGMEGDATPF---------------SKMTLEQISSRLFKCHYSKYGNEAFHN 1043

Query: 965  GVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEME 1024
            G  G  +  +IF+GP YYQRL+HMV DK   R+ G +  +TRQP +GR R GG+RFGEME
Sbjct: 1044 GFTGNLMASKIFVGPTYYQRLKHMVEDKIHARARGPVTMLTRQPTEGRSRDGGLRFGEME 1103

Query: 1025 RDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP 1084
            RD +++HGAA +L +RL   SD +   VC+LCG +  A   +                  
Sbjct: 1104 RDCMISHGAAKMLKERLFDQSDAYRVHVCNLCGLLSIANLNN------------------ 1145

Query: 1085 KKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGDG 1128
                C AC     +  V +PY  + L  EL AM I   L L + 
Sbjct: 1146 SSFQCTACDNKTQISQVTIPYACKLLLQELMAMAIYPKLVLTEA 1189


>gi|302348973|ref|YP_003816611.1| DNA-directed RNA polymerase subunit B [Acidilobus saccharovorans
            345-15]
 gi|302329385|gb|ADL19580.1| DNA-directed RNA polymerase subunit B [Acidilobus saccharovorans
            345-15]
          Length = 1179

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 315/1147 (27%), Positives = 508/1147 (44%), Gaps = 164/1147 (14%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
              R    +Y+  L   ++ + ++ G+ V  +    G FP+M+K+    L  A  ++L+  
Sbjct: 104  EARLRNFTYSAPLF--LQMKLVENGTEVYSDEVKVGDFPIMVKSVIDPLSKASYRELLEA 161

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
             E+  + GGYFI+NG ERV    ++ +++  ++ +            + A +    +   
Sbjct: 162  GEDPNDPGGYFIINGSERV----VVAQEDLAVNRIIVGV-----STANTAKITHSAKTVS 212

Query: 157  SSVTLKLYYLLN----GSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEK 212
            + + L+   +++    GS+ +   +    Y +P  +++KAL    D EI           
Sbjct: 213  TILGLRRQVIVDRMSDGSLEVS--MSRLNYRIPFIVMMKALGLEKDAEI----------- 259

Query: 213  YKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAE 272
                  AV      +R  +   E    ++ T+   L+ +G     +  G   E     AE
Sbjct: 260  ----AAAVSPDPDVQRELLPSFEKVSAAIRTKEDALEFLGNR---IATGQPREIRIQRAE 312

Query: 273  TVIRDYIFVHLN----DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
              I      H+     D   K   L  M  ++  L       D+ D L N+ + L G LI
Sbjct: 313  EFIDTQFLPHIGLTPADRLAKAYFLGEMANRVLQLYLGKRQEDDKDHLANKRLRLAGDLI 372

Query: 329  TIYLKEKLEDWLRKGKKLIQDEIE----NNGKKFDFFNLANIKKVMEKNPSKQIGTSIET 384
                 E   D  ++   LI  E+E     + K  D  +L     + E+            
Sbjct: 373  A----EIFRDAFQQLATLIASELEEYISQHRKVRDLRSLVRPDIITERV----------- 417

Query: 385  MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPE 444
                 R A  TG     R G +   +R N++  +S  R V    S  G      R L   
Sbjct: 418  -----RAALATGNWTGNRTGVSQALDRTNWMSLLSHLRRVISPLS-RGESNFEARDLHGT 471

Query: 445  SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP- 503
             WG LCP  TP+G  CGL+ ++  T  ++   + +            +  +L+ + +IP 
Sbjct: 472  HWGRLCPFETPEGINCGLVKNLAMTAYISVGVNEQ-----------HVKNILMSMDLIPL 520

Query: 504  -SLPKLVKSGPPAVLS-------VLLDGRVVGVIPS-SEIEKVVAHLRRLKVSAASVIPD 554
                K + SG P  +        V L+G+ +G +   +E+ + +  +RR     +  +  
Sbjct: 521  DDAIKEIASGEPEAIEKYTNMAKVFLNGKPIGYVQDGAELRRKLIAMRR-----SGSLSY 575

Query: 555  DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNIS--LPSEESQNIELIGPFEQVF---- 608
            ++ V Y+     G    +Y+ T   + +RPV  +    P    + +E +   E  F    
Sbjct: 576  EVSVAYIE---QGGIKEVYINTDEGRLMRPVIVVENGKPKLTKEMVEKVKRGEMSFWDLV 632

Query: 609  ----MEIRCPDGGDGGRRNAFPA------THEEIHPTGMLSVVANLTPYSDHNQSPRNMY 658
                +E   PD  +       P       TH E+   G+ SVV ++TP+ +HNQSPRN Y
Sbjct: 633  RNGVIEFLDPDEEENAYVAESPEEVTPEHTHLEMWTPGIFSVVTSITPFLEHNQSPRNTY 692

Query: 659  QCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLA 718
            Q  MAKQ +G      ++R D   Y L  PQ PIV+T +  + G ++ P+G N IVA++ 
Sbjct: 693  QAAMAKQALGLYALNYQYRMDSHAYLLHYPQKPIVQTRSLEEIGYNDRPSGQNFIVAIMP 752

Query: 719  YTGYDMEDAMILNKSSVDRGMCHGQIYQTETI-DLSDDGNKVD------------RGQKL 765
            Y GY+MEDA+I+NK+SVD G+     ++  T+ + +  G   D            +G + 
Sbjct: 753  YMGYNMEDAIIMNKTSVDYGLGRAHFFRVYTVMENTYAGGLKDTITVPSPKLYDHKGDQY 812

Query: 766  FRRNKDAKSLHSVIDSDGLP-YVGQMIHP----GEPYCSIYDKTTNSWRTNSRKGSESVF 820
            + +      +   ++ DG    VG+   P     E   S+   T        R G   V 
Sbjct: 813  YTKLGPDGIIEPEVEVDGGDVLVGRESPPRFLGEERVMSLGTLTKRDTSVQLRYGEHGV- 871

Query: 821  VDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTG 880
            VD V +     +NL  K  ++ R  R P +GDKF+SRHGQKGV   L+P  DMP++   G
Sbjct: 872  VDTVLITQTTDRNLLVK--VKVRDLRIPELGDKFASRHGQKGVVGMLYPKYDMPYTE-DG 928

Query: 881  MRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKS 940
            + PD+IINPH  PSRMT+  +LE +  K  ++  +++D TPF                K 
Sbjct: 929  IVPDIIINPHGIPSRMTVGQILELITGKAAAMEARYVDGTPF---------------YKD 973

Query: 941  LVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGT 1000
             VD+   +L   G++  G EV+Y G  G  L   I IG V+YQRL HMV+DK   R+TG 
Sbjct: 974  DVDQYKIILIKHGYSPDGTEVMYDGRTGQLLETPISIGVVFYQRLYHMVADKMHARATGK 1033

Query: 1001 MDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVL 1060
            +  +TRQP +G+ R GG+RFGEMERD L+ HGA  LL DR+   SD +   VC+LCG V 
Sbjct: 1034 VQLLTRQPTEGKARQGGLRFGEMERDCLVGHGATMLLRDRMLDGSDAYTMYVCTLCGHVA 1093

Query: 1061 TATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIK 1120
                 +  ++ + E              C     +  ++ V +PY F+    E+ +M IK
Sbjct: 1094 W----YNSRKNVYE--------------CPIHGENGDIKPVKVPYAFKLFLQEIMSMGIK 1135

Query: 1121 ITLQLGD 1127
              +++ D
Sbjct: 1136 PRIEVSD 1142


>gi|170042980|ref|XP_001849183.1| DNA-directed RNA polymerase II 140 kDa polypeptide [Culex
            quinquefasciatus]
 gi|167866385|gb|EDS29768.1| DNA-directed RNA polymerase II 140 kDa polypeptide [Culex
            quinquefasciatus]
          Length = 1176

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 330/1161 (28%), Positives = 519/1161 (44%), Gaps = 176/1161 (15%)

Query: 34   MFDHCRQAKISYTGKLMADV-EFQYLDAGSPV--VRERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+ + + ++   PV    ++   G+ P+ML++  C L     
Sbjct: 110  MPNEARLRNLTYSAPLYVDITKTKIVEGQDPVETQHQKTFIGKIPIMLRSTYCLLSQLTD 169

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  Y  K+ +  
Sbjct: 170  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKYAY--KSEIRS 224

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL    +  G   +     G+  +         +P+ IV +AL    D +
Sbjct: 225  CLEHSSRPTSTLWCNMMARGGQSIKKSAIGQRVIAILPYVKQEIPIMIVFRALGFVADRD 284

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAE---VQDLSLTTRLQCLQHIGEHFQP 257
            I  H+   +D+           P + E VK  L E   VQ+ ++      L  IG   + 
Sbjct: 285  ILEHIIYDFDD-----------PEMMEMVKPSLDEAFVVQEQNVA-----LNFIGA--RG 326

Query: 258  VIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNP 313
               G+  +     A+ +++  +  H+  ++     K   L +M+ +L          D+ 
Sbjct: 327  ARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDR 386

Query: 314  DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKN 373
            D   N+ + L G L+    +   ++ L++ +   Q  I + GK F+   LA IK      
Sbjct: 387  DHYGNKRLDLAGPLLAFLFRGLFKNLLKEVRMYAQKFI-DRGKDFNL-ELA-IK------ 437

Query: 374  PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
             +K I   +   L TG    Q     Q RAG +    RL F   +S  R V+      G 
Sbjct: 438  -TKIITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG- 494

Query: 434  RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
            +    R+L    WG +CP  TP+G   GL+ ++     ++                + IL
Sbjct: 495  KLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPIL 543

Query: 494  RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VS 547
              L    M  +L ++  S       + ++G  VG+    + E+++A LR+L+      VS
Sbjct: 544  EFLEEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVS 600

Query: 548  AASVIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------------RNISLPSE 593
              S+I D  D E+               ++T   +  RP+             ++ +  E
Sbjct: 601  EVSMIRDIRDREI--------------RIYTDAGRICRPLLIVENGSLLLRKNHVDMLKE 646

Query: 594  ESQN------------IELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGML 638
               N            +E I   E+   M    P      +  A+  T  H EIHP  +L
Sbjct: 647  RDYNNYGWQVLVASGVVEYIDTLEEETVMIAMTPYDLKQDKEYAYCTTYTHCEIHPAMIL 706

Query: 639  SVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTY 698
             V A++ P+ DHNQSPRN YQ  M KQ MG  +     R D   + L  P  P+V T + 
Sbjct: 707  GVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSM 766

Query: 699  TKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD-GN 757
                  E P G N+IVA+L YTGY+ ED++ILN S+V+RG      Y++     S   G+
Sbjct: 767  EYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKKIGD 826

Query: 758  KVDRGQKLFRRNKDA--KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKT 804
            + ++ +K  R+       +L+  +D DG+             +G+ I   E    + D T
Sbjct: 827  QEEQFEKPNRQTCQGMRNALYDKLDDDGIIAPGLRVSGDDVVIGKTITLPETDDDL-DGT 885

Query: 805  TNSWRTNSRKGS------ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRH 858
            T   R + R GS      E+  VD V + + NS+   +   IR R  R P IGDKF+SRH
Sbjct: 886  TK--RYSKRDGSTFLRNSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRH 941

Query: 859  GQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMD 918
            GQKG C   +   DMPF+   G+ PD+IINPHA PSRMTI  L+E +  K GS  G+  D
Sbjct: 942  GQKGTCGIQYRQEDMPFT-CEGLTPDIIINPHAIPSRMTIGHLIECIQGKLGSNKGEIGD 1000

Query: 919  ATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIG 978
            ATPF ++V               V ++   L+  G+   G EV+Y+G  G ++  ++F+G
Sbjct: 1001 ATPFNDAVN--------------VQKISTFLQEYGYQLRGNEVMYNGHTGRKINAQVFLG 1046

Query: 979  PVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLH 1038
            P YYQRL+HMV DK   R+ G +  + RQP++GR R GG+RFGEMERD  ++HGAA  L 
Sbjct: 1047 PTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLR 1106

Query: 1039 DRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGM 1098
            +RL   SD +   VC+ CG +  A   +                      C  C+    +
Sbjct: 1107 ERLFEVSDPYRIHVCNFCGLIAIANMRN------------------NTFECKGCKNKTQI 1148

Query: 1099 ETVAMPYVFRYLAAELAAMNI 1119
              V +PY  + L  EL +MNI
Sbjct: 1149 SQVKLPYAAKLLFQELMSMNI 1169


>gi|403331439|gb|EJY64666.1| DNA-directed RNA polymerase [Oxytricha trifallax]
          Length = 1198

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 321/1140 (28%), Positives = 515/1140 (45%), Gaps = 185/1140 (16%)

Query: 54   EFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLV-SLKEEAAEMGGYFILNGL 112
            +F  L+   P+  + F  G+ PVM++++ CHL+     ++V + KE   + GGYF++NG 
Sbjct: 160  KFTILEDSKPI--QTF-LGKVPVMVRSKFCHLRNLQDHEIVRNAKECLYDQGGYFVINGG 216

Query: 113  ERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVR 172
            E+V    I+ ++    ++V    R     Y+  A  IR   ++ +    +    +   ++
Sbjct: 217  EKV----IIAQERMANNIVLVFHRRPPSKYSWVAE-IRSQAENSNKPPQQFMVAIQEKIK 271

Query: 173  LGFWLQGKEYL-------------LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGA 219
            LG    G  Y              +PV I+++AL   +D +I N +  CYD +  +   +
Sbjct: 272  LG-EQGGGNYARTICATIPAIREPIPVAILMRALGCVSDKQIINKI--CYDPEDSEMCES 328

Query: 220  VGSPLVSERVKIILAEVQDL------------SLTTRLQCLQHIGE-HFQPVI----DGL 262
            +   L  E+   ++ E   L            S  TR+Q  Q I E  F P +    +GL
Sbjct: 329  LKPSL--EQAMTVMTEEDALDFISKRGSGAQYSRDTRIQYAQKILETEFLPHVSMNAEGL 386

Query: 263  QSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEIL 322
              +SY+                        + +M+ +L       +  D+ D    + + 
Sbjct: 387  YKKSYF------------------------VGYMVNRLIQASLGRTSEDDRDYYGKKRMD 422

Query: 323  LPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSI 382
            + G L++   ++          K ++ +I+N GK+    +LA+  K      S  I   +
Sbjct: 423  MAGSLLSGLFRQLFRQTTDDMLKYLKRDIDN-GKQI--LSLASAIK------SDTISRGL 473

Query: 383  ETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLL 442
            ++ L TG        D+Q + G      RL F   +S  R ++   + +G + T  R+L 
Sbjct: 474  KSALATGNWGKDKQGDVQ-KTGVAQVLNRLTFASSLSHLRRLNTPLAKSG-KLTKPRQLH 531

Query: 443  PESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMI 502
               WG +CP  TP+G+ CGL+ +++    V+        +   +K    IL    GV  +
Sbjct: 532  NSHWGMVCPAETPEGQACGLVKNLSLMSLVS--------VGSPNKTLIEILEDF-GVEDL 582

Query: 503  PSLPKLVKSGPPAVLSVLLDGRVVGV-IPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYV 561
             SL  ++      V  V ++G  +G    ++++ K +  +RR        IP ++ +   
Sbjct: 583  TSLDPIILQNKELV-KVFVNGNWIGCHRNATDLVKNIKDMRR-----TYTIPKEISI--- 633

Query: 562  PLSLGGAYPG-LYLFTSPPKFVRP---VRNISLPSEESQNIELIG---PFEQVFMEIRCP 614
               +   Y   +  FT   +  RP   V N +L  ++    +LI     FE +  E  C 
Sbjct: 634  ---VRDIYTKEIKFFTDSGRVQRPLFIVENSALRIKKFHIPQLINGSKNFEDLLQEGLCE 690

Query: 615  ----------------DGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMY 658
                            D   G +   +  TH EIHP+ +L V A++ P+ DHNQSPRN Y
Sbjct: 691  FLDVEEEETVMIAMTLDDLKGQKAIEYHYTHCEIHPSMILGVCASIIPFPDHNQSPRNTY 750

Query: 659  QCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLA 718
            Q  M KQ MG      + R D   + L  PQ P+V T +       E  +G NA +A+  
Sbjct: 751  QSAMGKQAMGVYTSNYQMRMDTLAHVLYYPQKPLVCTKSMEFLHFKELSSGLNASIAIAC 810

Query: 719  YTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV---DRGQKLFRRNKDAKSL 775
            YTGY+ ED+++LN+S++DRG      ++T   D S +G      D  +   R++ D   L
Sbjct: 811  YTGYNQEDSIMLNQSAIDRGFFRSVFFRTYD-DCSKEGEVFAIPDFAKTSGRKHGDYDKL 869

Query: 776  HSVIDSDGLPYVGQMIHPGEPYCSIYDK-TTNSWRTNSR--------------KGSESVF 820
                D DGL   G ++   +       K T+N++  + R              K SES  
Sbjct: 870  ----DIDGLICPGVLVSGDDIIVGKVAKMTSNTFNEDLRDSTAKKFKDCSTPLKHSESGI 925

Query: 821  VDYVAVDMKNSKNLPQK-ANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVT 879
            +D V +    + +  QK   ++ R  R P IGDKF+SRHGQKG C   +   D+PF+   
Sbjct: 926  IDQVIL---TTNDEAQKFTKVKMRAVRIPQIGDKFASRHGQKGTCGMTYRQEDLPFTR-E 981

Query: 880  GMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESK 939
            G+ PD+I+NPHA PSRMTI  L+E + +K  SL+G   DATPF                 
Sbjct: 982  GVVPDMIVNPHAIPSRMTIGHLIECLLSKVASLNGSEGDATPFCGQN------------- 1028

Query: 940  SLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTG 999
              VDE+ ++L   G+  +G EV+Y+G  G +    IF+GP +YQRL+HMV DK   R  G
Sbjct: 1029 --VDEISQLLHELGYQRYGNEVMYNGFTGRKFEVLIFLGPTFYQRLKHMVGDKIHSRGRG 1086

Query: 1000 TMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSV 1059
                +TRQP +GR R GG+RFGEMERD +++HGAA  L +RL   SD +   +C  CG +
Sbjct: 1087 PTQILTRQPTEGRSRDGGLRFGEMERDCMISHGAARFLKERLFDVSDCYRVHICQTCGLI 1146

Query: 1060 LTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
              A                    A ++  C+ C  +  +  V +PY  + L  EL AM +
Sbjct: 1147 CQANL------------------AEQRYECNNCNNTSNICQVKIPYAAKLLIQELMAMQL 1188


>gi|219116230|ref|XP_002178910.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217409677|gb|EEC49608.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 1211

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 339/1228 (27%), Positives = 532/1228 (43%), Gaps = 200/1228 (16%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
            F  LR L+R HI+SFD+ +D  + ++                                  
Sbjct: 74   FLRLRSLLRQHIDSFDHFVDVEMQQIVQSPSACEIRSEHDPKFYLRYEACWVGEPSVEED 133

Query: 37   ----------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQ 86
                       CR    +Y+  +  +V  +Y      VV+ +   G+ P+ML++++C L+
Sbjct: 134  SYSVKSATPFQCRLRDCTYSAPIYVNV--RYTRGRQIVVKRKVMIGRMPIMLRSKKCLLR 191

Query: 87   GADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKA 146
                  L  +KE   + GGYF++ G+E+V   +++ +Q   +S  R    +  +G     
Sbjct: 192  DRSEDDLAGMKECPYDPGGYFVIKGVEKV---ILIQEQ---LSKNRVILEEDNKGIMASI 245

Query: 147  VVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLT 206
                  RK ++ + +K     NG V L     G +  +PV +VLKA+   +DLE+   + 
Sbjct: 246  TSSTHERKSKAYILIK-----NGRVYLKNNTLGDD--IPVAVVLKAMGIESDLELVQLV- 297

Query: 207  CCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSES 266
                           SP+++  + + L E   L + T+ Q L+ IG   +         S
Sbjct: 298  ------------GSESPIINA-LALSLEEPSRLGIHTQAQALRFIGAKIRGRSGPSGPSS 344

Query: 267  YYAV-------AETVIRDYIFVHLNDNNDKFN---LLIFMLQKLFSLVDHTSVS-DNPDS 315
             Y         A  V+ + +  H+   +  F    L I  + +   LV    +  D+ D 
Sbjct: 345  SYRKNVSPEDEAREVLANVVLSHVPVTHFDFREKALYIGHIVRRVLLVHLGKMPLDDKDY 404

Query: 316  LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPS 375
              N+ + L G+L+++ L E L     K  K   D + +   +   F++  +K +     +
Sbjct: 405  YGNKRLELAGNLLSL-LFEDLFKIFNKDLKRQADLVLSKPNRTQAFDV--VKTIRPDTIT 461

Query: 376  KQIGTSIET---MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAG 432
              +  +I T   +LK  R+          RAG T    RL+++  +     ++  + F  
Sbjct: 462  NGMINAIATGNWVLKRFRM---------DRAGVTQVLSRLSYMSALGMMTRIN--SQFEK 510

Query: 433  LRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS 491
             R  S  R L P  WG LCP  TP+GE CGL+ ++     + +      + R   +    
Sbjct: 511  TRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNLALLGHITT---DEADTRPIER---- 563

Query: 492  ILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSA--- 548
            I R L GV  +  +     +   A L V L+G ++GV   +   ++V +LR+++      
Sbjct: 564  ICRDL-GVEDVKRMTGHEINSHQAFL-VFLNGLILGV--HTRPRELVRNLRKMRRRGLAG 619

Query: 549  --ASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQ 606
               SV   D +      + GG      L       +  ++ I + S     +++     Q
Sbjct: 620  EFVSVYLHDEQCAVHIATDGGRVCRPLLIVDEETGLPKLQQIHMESLALGTMDITDLMRQ 679

Query: 607  VFME-IRCPDGGD----------------GGRRNAFPATHEEIHPTGMLSVVANLTPYSD 649
              +E + C +  +                G        TH E+ P  +L VV  + P+  
Sbjct: 680  GIVEYVDCNEENNTLIAVTERDLEVAILHGLETRKMRYTHLEVDPFTILGVVGGIIPFPH 739

Query: 650  HNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTG 709
            HNQSPRN Y   MAKQ MG        R D  +Y L  PQ P+V++ T      D  P G
Sbjct: 740  HNQSPRNTYTVAMAKQAMGSVSMNQYERMDGLIYTLIYPQKPMVKSRTLDLVNFDNIPGG 799

Query: 710  TNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGN-KVDR-----GQ 763
             NA +AV++Y+GYD+EDA+ILNK++VDRG     + +     +    N  +DR       
Sbjct: 800  HNACIAVMSYSGYDIEDAIILNKAAVDRGFGRCMVLRKHQTSVRRYANGTMDRTCAPPDP 859

Query: 764  KLFRRNKDAKSL--HSVIDSDGLPYVGQMIHPGEPYC---SIYDKTTNSWRTN------- 811
              F   +D K    +  ID DG+  VG+ I  G       S  D T+N    +       
Sbjct: 860  GSFPDGEDDKRFARYMAIDKDGICRVGEKIENGSVMVNKESPADTTSNMAGVDFGFNSGM 919

Query: 812  ------------SRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHG 859
                        S +GS S +VD V +    ++    K  +  R  R P IGDKF+SRHG
Sbjct: 920  SMAHLNYKPSGVSYRGSASTYVDKVLITSNENEQFLIK--VMLRQVRRPEIGDKFASRHG 977

Query: 860  QKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDA 919
            QKGVC  + P+ D+PF+   G  PDLI+NPH FPSRMT+  LLE +  K G   G+   +
Sbjct: 978  QKGVCGLIVPEEDLPFNEF-GHVPDLIMNPHGFPSRMTVGKLLELLVGKAGLYEGRQGYS 1036

Query: 920  TPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGP 979
            + F        G   T +S S      E L   G NY G ++LYSG  G  L   IF GP
Sbjct: 1037 SAFGEEF----GSADTAQSAS------EALLRNGLNYTGKDILYSGTNGEPLDAYIFSGP 1086

Query: 980  VYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHD 1039
            V+YQ+L+HMV DK   R+ G    +TRQP +GR R GG+R GEMERD L+A+G + L+ +
Sbjct: 1087 VFYQKLKHMVLDKAHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIAYGVSNLIME 1146

Query: 1040 RLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGME 1099
            RL   SD   A+VC  CG +    +                        C  C++ + + 
Sbjct: 1147 RLMHSSDAFSANVCLTCGLLQYEGW------------------------CQYCRSGEKVA 1182

Query: 1100 TVAMPYVFRYLAAELAAMNIKITLQLGD 1127
             + +PY  + L  EL +MN+   L+L D
Sbjct: 1183 DIRLPYACKLLFQELQSMNVLPRLRLQD 1210


>gi|345495600|ref|XP_003427537.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB2 [Nasonia vitripennis]
          Length = 1174

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 318/1141 (27%), Positives = 506/1141 (44%), Gaps = 136/1141 (11%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+       G   +    ++   G+ P+ML+++ C L G   
Sbjct: 108  MPNEARLRNLTYSAPLYVDITKTIEKDGEEPIETQHQKTFIGKIPIMLRSKYCLLAGLSD 167

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  Y  K  +  
Sbjct: 168  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGK--YAFKCEIRS 222

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  +      +     G+  +         +P+ IV +AL    D +
Sbjct: 223  CLEHSSRPTSTLWINMMAKSGANIKKSAIGQRIVAVLPYIRQEIPIMIVFRALGFVADRD 282

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +D+           P + E VK  L E     +  +   L  IG   +    
Sbjct: 283  ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGT--RGARP 327

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  +     A+ +++     H+  ++     K   L +M+ +L S        D+ D  
Sbjct: 328  GVTKDKRIKYAKEILQKETLPHVGISDFCETKKAYFLGYMVHRLLSASLGRRELDDRDHY 387

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   ++ +++ +   Q  I + GK F+   LA IK       +K
Sbjct: 388  GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFI-DRGKDFNL-ELA-IK-------TK 437

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   +   L TG    Q    L  RAG +    RL F   +S  R V+      G +  
Sbjct: 438  IITDGLRYSLATGNWGDQKKAHLA-RAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 495

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG LCP  TP+G   GL+ ++     ++                + IL  L
Sbjct: 496  KPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 544

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  S       + ++G  VG+    + ++++A LR+L+      VS  S
Sbjct: 545  EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPDQLMATLRKLRRQMDIIVSEVS 601

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
            +I D  +      +  G      L       +   R+I +  +   N            +
Sbjct: 602  MIRDIRDREIRIYTDAGRISRPLLIVENQTLLLKKRHIDMLKDRDYNNDGWQELVASGVV 661

Query: 599  ELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQSPR 655
            E I   E+   M    PD     +  A+ +T  H EIHP  +L V A++ P+ DHNQSPR
Sbjct: 662  EYIDTLEEETVMIAMSPDDLKQEKEYAYCSTYTHCEIHPAMILGVCASIIPFPDHNQSPR 721

Query: 656  NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
            N YQ  M  + MG  +     R D   + L  P  P+V T +       E P G N+IVA
Sbjct: 722  NTYQVNMFPKVMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVA 781

Query: 716  VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVDRGQKLFRRNKDA-- 772
            +L YTGY+ ED++ILN S+V+RG      Y++ +  +    G++ ++ +K  R+      
Sbjct: 782  ILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSETKKFGDQEEQFEKPSRQTCQGMR 841

Query: 773  KSLHSVIDSDGLPYVG------------QMIHP--GEPYCSIYDKTTNSWRTNSRKGSES 818
             +L+  +D DG+   G             M  P   +   S   + T    +   + SE+
Sbjct: 842  NALYDKLDDDGIIAPGIRVSGDDVVIGKTMTLPENDDELDSTTKRFTKRDASTFLRNSET 901

Query: 819  VFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGV 878
              VD V + + NS+   +   IR R  R P IGDKF+SRHGQKG C   +   DMPFS  
Sbjct: 902  GIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFS-C 958

Query: 879  TGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDES 938
             G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF ++V            
Sbjct: 959  EGLTPDIIINPHAIPSRMTIGHLIECIQGKVSANKGEIGDATPFNDAVN----------- 1007

Query: 939  KSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRST 998
               V ++  +L   G+   G E++Y+G  G ++  ++F+GP YYQRL+HMV DK   R+ 
Sbjct: 1008 ---VQKISTLLCEYGYQLRGNEIMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRAR 1064

Query: 999  GTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGS 1058
            G +  + RQP++GR R GG+RFGEMERD  ++HGAA  L +RL   SD +   VC+ CG 
Sbjct: 1065 GPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGL 1124

Query: 1059 VLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMN 1118
            +  A   +                      C  C+    +  V +PY  + L  EL AMN
Sbjct: 1125 IAIANLRN------------------NTFECKGCKNKTQISQVRLPYAAKLLFQELMAMN 1166

Query: 1119 I 1119
            I
Sbjct: 1167 I 1167


>gi|384245445|gb|EIE18939.1| RNA polymerase II second largest subunit [Coccomyxa subellipsoidea
            C-169]
          Length = 1170

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 304/1107 (27%), Positives = 483/1107 (43%), Gaps = 138/1107 (12%)

Query: 71   FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSM 130
             G+ P+ML++  C L    +Q+L  L E   + GGYF++NG E+V    ++ ++    + 
Sbjct: 150  IGEVPIMLRSSYCSLHERTNQQLTQLGECPYDQGGYFVVNGSEKV----LIAQERMANNQ 205

Query: 131  VRSSFRDRREGYTDKA---VVIRCVRKDQSSVTLKLYYLLNG----SVRLGF-WLQGKEY 182
            V    + +   Y  +A    V+    ++ SS+++++     G    ++R    +++    
Sbjct: 206  VYVFRKSQPSKYAYQAECRSVVENSTRNTSSMSIRMLARSGGKGGQAIRATLPYIRAD-- 263

Query: 183  LLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLT 242
             +P+ I+ +AL  T D +I  H+   +++    E      P + E   I   EV      
Sbjct: 264  -IPILIIFRALGLTADKDILQHVVYDFNDTAMME---ALRPSIEEAFPIQTQEV------ 313

Query: 243  TRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLN----DNNDKFNLLIFMLQ 298
                 L  IG+       G+  E     A  +++  +  H+         K     +M+ 
Sbjct: 314  ----ALDFIGKRGSN--PGVTREKRIHYARDILQREMLPHVAIGEFSETKKAYFFGYMVH 367

Query: 299  KLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKF 358
            +L  +       D+ D   N+ + L G L+    ++      +  +  +Q  + + GK+ 
Sbjct: 368  RLLLVALGRRDQDDRDHYCNKRLDLGGPLLANLFRQLFRKLTKDVRSHVQKAV-DRGKEI 426

Query: 359  DFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFI 418
            +     N            I   +   + TG    Q    +  RAG +    RL +   +
Sbjct: 427  NLMAAVN---------KDTITRGLRYSIATGNWGMQGTAGM--RAGVSQVLNRLTYASTL 475

Query: 419  SFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDS 478
            S  R +       G +    R+L    WG +CP  TP+G+ CGL+ ++     V+    S
Sbjct: 476  SHLRRISSPIGREG-KLAKPRQLHNSQWGVICPAETPEGQACGLVKNLALMSYVSVGCPS 534

Query: 479  RGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLS---VLLDGRVVGV--IPSSE 533
               I +F +                S   L +  P  +L    V ++G  VG+   P+  
Sbjct: 535  -APIGEFLEEW--------------STENLEEINPSVILEATKVFVNGVWVGIHRQPAVL 579

Query: 534  IEKVVAHLRRLKVSAASVIPDDLEVGYVPL--SLGGAYPGLYLFTSPPKFVRPVRNISLP 591
            +  +    R++ +S    I  D+ +  + L    G     L++     K +   ++    
Sbjct: 580  VNTLRKMRRQVDISTEVGIVHDIRLQELRLYTDYGRCCRPLFIVDPDRKRLTITKDDIRQ 639

Query: 592  SEESQ-------------NIELIGPFEQ----VFMEIRCPDGGDGGRRNAFPAT--HEEI 632
             +E +              IE I   E+    + MEI+  +      R A+  T  H EI
Sbjct: 640  LQEREVTHFGWNELVHKGCIEYIDTEEEETTMIAMEIKDLENARTPGRVAYSETYTHCEI 699

Query: 633  HPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPI 692
            HP+ +L V A++ P+ DHNQSPRN YQ  M KQ MG  V   + R D + Y L  PQ P+
Sbjct: 700  HPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGMYVTNYQTRMDTQAYVLYYPQKPL 759

Query: 693  VRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDL 752
            V T         E P G N IVA+  Y+GY+ ED++++N+SS+DRG      ++T   + 
Sbjct: 760  VTTRAMEHLHFRELPAGQNTIVAIACYSGYNQEDSLMMNQSSIDRGFFRSMFFRTYRAEE 819

Query: 753  SDDGNKVDRGQKLFRRNKDAKSLHSV---IDSDGLP-----------YVGQMIHPGEPYC 798
               G+ V    ++  R+      H     +D DG+             +G+     +   
Sbjct: 820  KKQGSLVQEVIEVPDRSVTVAMRHGTYDKLDDDGIAPPGTRVSGEDVIIGKTSPLADEQP 879

Query: 799  SIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRH 858
             +  + +    + S + SES  +D V V         +   IR R  R P +GDKF+SRH
Sbjct: 880  GVAQRFSKKDVSTSLRNSESGMIDQVMVTTNAEGQ--RFVKIRVRSIRIPQVGDKFASRH 937

Query: 859  GQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMD 918
            GQKG     +   DMP++   G+ PDLIINPHA PSRMTI  L+E++ +K  +L GK  D
Sbjct: 938  GQKGTIGMTYTQEDMPWTS-EGIVPDLIINPHAIPSRMTIGHLVEALMSKVAALVGKEGD 996

Query: 919  ATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIG 978
            ATPFA                  VD +   L TCG+   G E +Y+G  G  L  +IF+ 
Sbjct: 997  ATPFAEVT---------------VDNISAALHTCGYQSRGWETMYNGHTGRRLQAQIFLN 1041

Query: 979  PVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLH 1038
            P YYQRL+HMV DK   R  G +  +TRQP++GR R GG+RFGEMERD +++HG+A  L 
Sbjct: 1042 PTYYQRLKHMVDDKIHSRGRGPVQILTRQPVEGRARDGGLRFGEMERDCIISHGSAAFLK 1101

Query: 1039 DRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGM 1098
            +RL   SD +   VC  CG    A     Q                    C AC+ + G+
Sbjct: 1102 ERLFDQSDAYRVHVCDRCGLFAVANLKKNQ------------------FHCPACKNTTGI 1143

Query: 1099 ETVAMPYVFRYLAAELAAMNIKITLQL 1125
              V MPY  + L  EL AM I   +Q 
Sbjct: 1144 VQVHMPYACKLLFQELMAMAIAPRMQF 1170


>gi|14520830|ref|NP_126305.1| DNA-directed RNA polymerase subunit B [Pyrococcus abyssi GE5]
 gi|5458046|emb|CAB49536.1| rpoB DNA-directed RNA polymerase, subunit B (EC 2.7.7.6) [Pyrococcus
            abyssi GE5]
 gi|380741372|tpe|CCE70006.1| TPA: DNA-directed RNA polymerase subunit beta [Pyrococcus abyssi GE5]
          Length = 1117

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 335/1215 (27%), Positives = 524/1215 (43%), Gaps = 232/1215 (19%)

Query: 15   LVRHHIESFDYMLDEGLSEMFDHCRQAK-------ISYTGKLMADVEFQ----------- 56
            LVR H++S++  +D GL E+ D     K       + +    + + EFQ           
Sbjct: 27   LVRQHLDSYNAFIDRGLQEVVDEFGGIKPDIPDFEVKFGKIRVGEPEFQEPHGQRKPLYP 86

Query: 57   --------------YLDAGSPVVRE------RFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
                          YL+   PV+R           G+ P+MLK++ C L G    +L  L
Sbjct: 87   MDARIRNLTYSAPLYLEM-IPVIRGIEQEPVEVRIGELPIMLKSKVCRLYGLSDDELRQL 145

Query: 97   KEEAAEMGGYFILNGLERVFRSV--ILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRK 154
             E+  + GGYFI+NG ERV  S+  I P +    ++V     +R+E Y  K    R   +
Sbjct: 146  GEDPKDPGGYFIINGSERVIVSIEDIAPNR----TLVEKD--ERQEKYIAKVFSYRHGYR 199

Query: 155  DQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGI-----------VLKALVDTNDLEIFN 203
               +V  K                 K+ +L VGI           V++AL    D +I +
Sbjct: 200  ALVTVERK-----------------KDGILYVGIPNVPKPVKFVYVMRALGLERDKDIVD 242

Query: 204  HLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLS-LTTRLQCLQHIGEHFQPVIDGL 262
                           AVG+    E  +I+   ++D S +TT+ + L++IG+   P   G 
Sbjct: 243  ---------------AVGND--PEVQQILFDNLEDASDITTQQEALEYIGKLVAP---GQ 282

Query: 263  QSESYYAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQN 318
              E     AE VI + +  H+     D   K   L  M  K+  L       D+ D   N
Sbjct: 283  AREYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDHYAN 342

Query: 319  QEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQI 378
            + + L G L+    +      ++  +  +    +  G+K+ F N+              I
Sbjct: 343  KRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRF-----------I 391

Query: 379  GTSIETMLKTGRL--ATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
              SI   + T R+  A  TG     R G +   +R N++  +S  R V            
Sbjct: 392  RNSIRPDVLTERIEHALATGAWPGGRTGVSQLLDRTNYVSTLSHLRRVTSPLDREQPHFE 451

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
            + R L    WG +CP  TP+G  CGL+ ++    ++ +           +     +   L
Sbjct: 452  A-RDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITT-----------AVPEEEVKEYL 499

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSE--IEKVVAHLRRLKVSAASVIP- 553
            + +G++P     V+   P +  V L+G ++G I   +  +E++    R  K+S    +  
Sbjct: 500  MSLGIVPI---EVRRPSPELWRVYLNGVIIGTIEDGKALVERIKKDRRSGKISDIINVAY 556

Query: 554  -DDLEVGYVPLSLGGA-YPGLYLFTSPPKFVRP-VRNISLPSEESQNIELIGPFEQVFME 610
             +D+   YV    G    P + +    PK  +  V+ I     +  ++  +G  E +  E
Sbjct: 557  YEDVREVYVNSDDGRVRRPLIIVENGKPKLTKEHVQAIKEGRLKWSDLVRMGVIEYLDAE 616

Query: 611  IRCPDGGDGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQC 660
                        NA+ A          TH E+ P  +L + A+L PY +HN +PRN Y  
Sbjct: 617  ---------EEENAYVAMWPWEVTEEHTHLELMPAAILGLPASLIPYPEHNAAPRNTYGA 667

Query: 661  QMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYT 720
             MAKQ++G      + R D + + L  PQ P+V +      G ++ P G N +VAVLAY 
Sbjct: 668  GMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYH 727

Query: 721  GYDMEDAMILNKSSVDRGMCHGQIY-------------QTETIDLSDDGNKVDRGQKLFR 767
            GY+MEDA+I+NK+S++RG+     +             QT+  ++     +  RG+K +R
Sbjct: 728  GYNMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIPSPTVRGYRGEKYYR 787

Query: 768  RNKDAKSLHSVIDSDGLPY-----------VGQMIHP------GEPYCSIYDKTTNSWRT 810
                       +D DGL +           +G+   P      G    S+ ++   S   
Sbjct: 788  H----------LDEDGLIFPESKVEGKDVLIGRTSPPRFLEERGLGAVSLQERRETS--- 834

Query: 811  NSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPD 870
             + + SE   VD V +    + +  +   +  R  R P IGDKF+SRHGQKGV   + P 
Sbjct: 835  VAVRPSERGVVDKVII--TETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQ 892

Query: 871  IDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTN 930
             DMP++  +G+ PDLI+NPH  PSRMT+  LLE++  K  +L G+ +D T F    ++  
Sbjct: 893  EDMPWTE-SGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPEEKL 951

Query: 931  GDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVS 990
                                  GF + G E++Y G+ G     +IF+G +YYQRL HMV+
Sbjct: 952  RKELE---------------ELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVA 996

Query: 991  DKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVA 1050
            DK   RS G +  +T+QP +GR R GG+RFGEMERD L+ HGAA LL +RL   SD    
Sbjct: 997  DKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEV 1056

Query: 1051 DVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYL 1110
             VC  CG +     +  ++R               KV C  C   + +  V M Y F+ L
Sbjct: 1057 WVCENCGHIA----LEDKRR--------------HKVYCPVCGEEERISKVEMSYAFKLL 1098

Query: 1111 AAELAAMNIKITLQL 1125
              EL AM I+  L L
Sbjct: 1099 LDELKAMVIRPKLNL 1113


>gi|196009726|ref|XP_002114728.1| DNA directed RNA polymerase II polypeptide B [Trichoplax adhaerens]
 gi|190582790|gb|EDV22862.1| DNA directed RNA polymerase II polypeptide B [Trichoplax adhaerens]
          Length = 1196

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 319/1141 (27%), Positives = 504/1141 (44%), Gaps = 151/1141 (13%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGS-PVVR--ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+        + P V+   +   G+ P+ML++  C L     
Sbjct: 111  MSNQARLRNLTYSAPLYVDITKTITKGNNEPEVKCHPKTFIGKIPIMLRSTYCLLHNMAD 170

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
              L  L E   ++GGYFI+NG E+V     L  Q    S     F+ +   Y   A  IR
Sbjct: 171  HALTELNECPLDVGGYFIINGSEKV-----LIAQEKMASNTVYVFQKKESKYAYVAE-IR 224

Query: 151  CVRKDQS--SVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDL 199
             V ++ S  + TL +  L  G       + G++ +         +P+ +V +AL    D 
Sbjct: 225  SVTENSSRPTSTLWVSMLARGGGTSKKSVIGQKIVAAIPYVNQEIPIMVVFRALGFVADR 284

Query: 200  EIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVI 259
            +I  H+   +D+           P + E VK  L E     +  +   L +IG       
Sbjct: 285  DILEHIIYDFDD-----------PELMEMVKPSLDEA--FVIQEQNVALNYIGSRGSR-- 329

Query: 260  DGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
             G+  E     A  +++  +  H+  ++     K   L +M+ +L          D+ D 
Sbjct: 330  SGVTKEKRIKYAREILQKEMLPHVGISDYCETKKAYFLGYMVHRLLLTALGRREVDDRDH 389

Query: 316  LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPS 375
              N+ +                  L K  K+   +  +NG+ F+   LA IK       +
Sbjct: 390  YGNKRLFRN---------------LLKEVKMYAQKFVDNGRDFNL-ELA-IK-------T 425

Query: 376  KQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
            K I   +   L TG    Q     Q RAG +    RL F+  +S  R ++      G + 
Sbjct: 426  KIITDGLRYSLATGNWGDQKKAH-QSRAGVSQVLNRLTFVSTLSHLRRLNSPIGRDG-KL 483

Query: 436  TSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV 495
               R+L    WG +CP  TP+G+  GL+ ++     ++                + IL  
Sbjct: 484  ARPRQLHNTHWGMICPAETPEGQAVGLVKNLALMAYIS-----------VGSQPSPILEF 532

Query: 496  LIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAA 549
            L    M  +L ++  S   +   + ++G  VG+    + E++++ LR+L+      VS  
Sbjct: 533  LEEWSM-ENLEEVSHSALASATKIFVNGCWVGI--HRDPEQLMSTLRKLRRQMDVIVSEV 589

Query: 550  SVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNI-SLPSEESQNI----ELIGP- 603
            S++ D  +      +  G      L     K V    +I S+ + +   +    +LI   
Sbjct: 590  SMVRDIRDREIRIYTDAGRICRPLLIVENQKLVLKKNHIESMKTADDYEVFGWQDLIANG 649

Query: 604  --------FEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPR 655
                     E+  M    PD    G       TH EIHP+ +L V A++ P+ DHNQSPR
Sbjct: 650  IVEYVDTLEEETVMIAMTPDYLTAGVNYCRTYTHCEIHPSMILGVCASIIPFPDHNQSPR 709

Query: 656  NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
            N YQ  M KQ MG        R D   + L  PQ P+V T +       E P G N IVA
Sbjct: 710  NTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINTIVA 769

Query: 716  VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVDRGQKLFRRNKDA-- 772
            + +YTGY+ ED++I+N+ ++DRG+     Y++    + S D N  +  +K  +       
Sbjct: 770  IASYTGYNQEDSIIMNRGAIDRGLFRSVFYRSYRDQESSGDFNSEEIFEKPSKETCSGMH 829

Query: 773  KSLHSVIDSDGLPYVGQMIHPG-----------EPYCSIYDKTTNSWRTNSRKG---SES 818
             +++  +D DGL   G  +  G           E   ++ D      + ++  G   SES
Sbjct: 830  NAMYDKLDDDGLVAPGTRVSGGDIVIGKTALLPEDADALGDTNKRFVKRDASTGLRSSES 889

Query: 819  VFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGV 878
              VD V + +  S+   +   +R R  R P IGDKF+SRHGQKG C   +   DMPF+  
Sbjct: 890  GIVDQVLLTV--SQEGYKFTKVRVRSVRIPQIGDKFASRHGQKGTCGITYRQEDMPFT-C 946

Query: 879  TGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDES 938
             G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF +++            
Sbjct: 947  EGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDTLT----------- 995

Query: 939  KSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRST 998
               V ++  +L   G++  G EVLY+G  G +L  ++F+GP YYQRL+HMV DK   R+ 
Sbjct: 996  ---VQKISSLLSDYGYHLRGNEVLYNGFTGRKLNTQVFLGPTYYQRLKHMVDDKIHARAR 1052

Query: 999  GTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGS 1058
            G +  +TRQP++GR R GG+RFGEMERD  ++HGAA  L +RL+  SD ++  +C+LCG 
Sbjct: 1053 GPLQNLTRQPMQGRARDGGLRFGEMERDCQISHGAAQFLRERLYDASDPYIVHMCNLCGL 1112

Query: 1059 VLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMN 1118
            V  A   +                      C  C+    +  V +PY  + L  EL +M+
Sbjct: 1113 VAVANLRN------------------DTYECKGCRNKTRISQVRIPYACKLLFQELMSMS 1154

Query: 1119 I 1119
            +
Sbjct: 1155 L 1155


>gi|71026390|ref|XP_762870.1| DNA-directed RNA polymerase III subunit [Theileria parva strain
            Muguga]
 gi|68349822|gb|EAN30587.1| DNA-directed RNA polymerase III subunit, putative [Theileria parva]
          Length = 1244

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 334/1202 (27%), Positives = 537/1202 (44%), Gaps = 190/1202 (15%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQ------ 91
            CR    +Y+  ++  ++  Y    +   +E    G+ PVML++  C L  +DS+      
Sbjct: 112  CRIRDFTYSAPILVTID--YFRDYTFTRKENLEIGRIPVMLRSCICFL-SSDSESNSDHD 168

Query: 92   ---------------------------------KLVSLKEEAAEMGGYFILNGLERVFRS 118
                                             K   L E   + GGYFI+ G+E+V   
Sbjct: 169  SSGLPEYNSSKKSMKNNFDIPDGLSKEDRESFYKSYMLDECPYDPGGYFIIKGVEKV--- 225

Query: 119  VILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQ 178
             IL ++    S +     D ++             K +++V  K   L    +R+  +  
Sbjct: 226  -ILMQEQLSKSRIIVEM-DVKKNICATVTSATAESKSRTAVVYKNSQLY---LRINSFTD 280

Query: 179  GKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKII--LAEV 236
                 +P+ IVLKA+    D EI   ++               S  +   +  I  L ++
Sbjct: 281  D----VPLCIVLKAMGIETDHEIIQLISNSPTTFKNSNNLTTPSSNLPNGLDYITFLNDL 336

Query: 237  QDLSLTTRLQCLQHIGEHFQPVIDG----------------LQSESYYAVAETVIRDYI- 279
             +  + +RL  L +IG+  +P + G                +  E  + +   V+  +I 
Sbjct: 337  YNEDINSRLDALMYIGKKIRPRVLGKGFFSSNKDRAPKSKQMILEDTHDILSRVLLSHIP 396

Query: 280  FVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDW 339
                 D + K   L  M  ++ ++V++    D+ D   N+ + L G +I+I  ++  + +
Sbjct: 397  MKDCRDFSGKIKTLSLMAHRVLNVVNNVEPLDDKDHYGNKRLELAGQMISILFEDFYKKF 456

Query: 340  LRKGKKLIQD------EIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLAT 393
            L   KK I+       E   N  K +  N  +I  +M   P+  I   ++  + TG    
Sbjct: 457  LSNMKKSIESILVKYLEANPNPAKGENSNFPDIFGLM---PTDIITNGMQNAIATGNWNI 513

Query: 394  QTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVH 453
            +      +++G +    RL+++  I             G + +  R L P  +G LCP  
Sbjct: 514  KRFR--MEKSGVSQVLSRLSYISSIGMMTKTDSQFE-KGRKVSGPRALQPSQFGILCPCD 570

Query: 454  TPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLI---GVGMIPSLPKLVK 510
            TP+GE CGL+ +++    V             S + T +L  L+   GV  I +L     
Sbjct: 571  TPEGESCGLVKNLSLMTHVT------------SDVPTPVLETLLFTLGVEPIDTLSSHDM 618

Query: 511  SGPPAVLS-----------VLLDGRVVGVIPSSE--IEKVVAHLRRLKVSAASVIPDDLE 557
              P    S           VLL+G ++G+  +++  +  ++   RR  ++    + ++ +
Sbjct: 619  FNPWKGTSEKCDNLLNARLVLLNGILLGIHRNAKFLVNSIIKLRRRGLINMFVSVYENSQ 678

Query: 558  VGYVPLSLGGAY---PGLYLFTSPPKF----VRPVRNISLPSEESQN---IELIGPFEQ- 606
               V +S  G     P + +  S P+     V+ +    +  E   N   +E I   E+ 
Sbjct: 679  QNQVHISSDGGRLCRPLIVVQNSVPRLTDELVQQLVENKIKMEYLFNNGILEWIDVNEEN 738

Query: 607  -VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQ 665
             + + +R  D  +         TH EI P  +L VVA L P+ +HNQSPRN YQC M KQ
Sbjct: 739  NLLIVMREKDITN-------LTTHLEISPMSILGVVAGLIPFPNHNQSPRNTYQCAMGKQ 791

Query: 666  TMGFSVQALKF-RADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDM 724
            ++G S+   +F R D  ++ +   Q P+V T T      D+ P G NAIVAV++Y GY++
Sbjct: 792  SIG-SIGYNQFQRCDTVVHLMNYTQQPLVTTKTIQLVNFDKLPAGQNAIVAVMSYQGYEI 850

Query: 725  EDAMILNKSSVDRGMCHGQIYQTETIDL-SDDGNKVDRGQKLFRRNKDAKSLHSVIDSDG 783
            EDA+ILNK+S+DRG       +  T ++ S +   ++       +NKD+ S +  +    
Sbjct: 851  EDAIILNKASIDRGFARCYTLRRLTCEITSGNATSLNGFNPSKSQNKDSDSNNEFVIG-- 908

Query: 784  LPYVGQMIHPGEPYCSI----YDKTTNSWRT------NSRKGSESVFV------------ 821
               VG+ + PG+   S      D TTN          N + G++  ++            
Sbjct: 909  ---VGEQVSPGQVLISTKAPPTDFTTNGSMNGKGTDKNQKTGNDDKYIVNKYNLNTGGCI 965

Query: 822  DYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGM 881
            D V +    + N   K  I  R +R P IGDKFSSRHGQKGV   +    DMPF+  +G+
Sbjct: 966  DRVILTENYNGNKMYK--IMVRQSRPPEIGDKFSSRHGQKGVVGLIAEHEDMPFTE-SGI 1022

Query: 882  RPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSL 941
             PDLI+NPH FPSRMT+  LLE VA+K     G F+D+TPF+NS      +   +   + 
Sbjct: 1023 VPDLIMNPHGFPSRMTVGKLLELVASKSSVFSGNFVDSTPFSNSYSDNLCNDLNNSGSNK 1082

Query: 942  VDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTM 1001
            + ++ ++L   GF+  G E+LYSG+ G  +   IFIGP+YYQRL+HMV+DK   R  G  
Sbjct: 1083 MSDICDILIKNGFHPKGKEILYSGISGNPINTLIFIGPIYYQRLKHMVTDKIHARGRGPR 1142

Query: 1002 DQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLT 1061
              ITRQP +GR R GG+R GEMERD L+A+G++ LL +RL   SD    +VCS CG +  
Sbjct: 1143 QPITRQPTEGRSRDGGLRLGEMERDCLIAYGSSNLLVERLMLSSDVFNIEVCSSCGFMGY 1202

Query: 1062 ATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKI 1121
              F                        C  CQ +  +  V++PY  + L  EL AMNI+ 
Sbjct: 1203 NNF------------------------CKFCQNN-SLAQVSLPYACKLLFQELQAMNIRP 1237

Query: 1122 TL 1123
            +L
Sbjct: 1238 SL 1239


>gi|324120616|dbj|BAJ78699.1| RNA polymerase II second largest subunit [Phraortes illepidus]
          Length = 1150

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 319/1141 (27%), Positives = 508/1141 (44%), Gaps = 136/1141 (11%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN---FGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   +  +      G+ P+ML++  C L G   
Sbjct: 84   MPNEARLRNLTYSAPLYVDITKTIIKDGDEPMESQHQKTFIGKIPIMLRSTYCLLNGLTD 143

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  Y  KA +  
Sbjct: 144  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKYAY--KAEIRS 198

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  +  G   +     G+  +         +P+ IV +AL    D +
Sbjct: 199  CLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAIMPYIKQEIPIMIVFRALGFVADRD 258

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +D++   E   +  P + E   I   + Q+++L         IG   +    
Sbjct: 259  ILEHIIYDFDDQ---EMMEMVKPSLDEAFVI---QEQNVALN-------FIGA--RGARP 303

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     A  +++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 304  GVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 363

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+  +L   L   L K  ++   +  + GK F+   LA IK       +K
Sbjct: 364  GNKRLDLAGPLLA-FLFRGLFKTLMKEVRMYAQKFIDRGKDFNL-ELA-IK-------TK 413

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   +   L TG    Q     Q RAG +    RL F   +S  R V+      G +  
Sbjct: 414  IITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 471

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G   GL+ ++     ++                + IL  L
Sbjct: 472  KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 520

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  S       + ++G  VG+    + E+++  LR+L+      VS  S
Sbjct: 521  EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMTTLRKLRRQMDIIVSEVS 577

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
            +I D  +      +  G      L     K +   R+I +  +   N            +
Sbjct: 578  MIRDIRDREIRIYTDAGRICRPLLIVENGKLLLKKRHIDMLKDREYNNYGWQVLVASGVV 637

Query: 599  ELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQSPR 655
            E I   E+   M     +     +  A+  T  H EIHP  +L V A++ P+ DHNQSPR
Sbjct: 638  EYIDTLEEETVMIAMMTEDMKHEKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPR 697

Query: 656  NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
            N YQ  M KQ MG  +     R D   + L  P  P+V T +       E P G N++VA
Sbjct: 698  NTYQSAMGKQAMGVYITNYHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSVVA 757

Query: 716  VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVDRGQKLFRRNKDA-- 772
            +L YTGY+ ED++I+N S+V+RG      +++ +  +    G++ ++ +K  R+      
Sbjct: 758  ILCYTGYNQEDSVIMNASAVERGFFRSVFFRSYKDAESKRIGDQEEQFEKPTRQTCQGMR 817

Query: 773  KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGSES 818
             +L+  +D DG+   G  +   +       ++ D       T  R          + SE+
Sbjct: 818  NALYDKLDDDGIIAPGIRVSGDDVVIGKTITLPDNEDELEGTTKRFTKRDASTFLRNSET 877

Query: 819  VFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGV 878
              VD V + + N++   +   IR R  R P IGDKF+SRHGQKG C   +   DMPF+  
Sbjct: 878  GIVDQVMLTL-NAEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT-C 934

Query: 879  TGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDES 938
             G+ PD+IINPHA PSRMTI  L+E +  K  S  G+  DATPF ++V            
Sbjct: 935  EGLTPDIIINPHAIPSRMTIGHLIECLQGKVSSNKGEIGDATPFNDAVN----------- 983

Query: 939  KSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRST 998
               V ++  +L+  G+   G EV+Y+G  G ++  +IF+GP YYQRL+HMV DK   R+ 
Sbjct: 984  ---VQKISALLQEYGYQLRGNEVMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHSRAR 1040

Query: 999  GTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGS 1058
            G +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +RL   SD +   VC+ CG 
Sbjct: 1041 GPVQILVRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGL 1100

Query: 1059 VLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMN 1118
            +  A   +                      C  C+    +  V +PY  + L  EL AMN
Sbjct: 1101 IAIANLRN------------------NTFECKGCKNKTQISQVRLPYAAKLLFQELMAMN 1142

Query: 1119 I 1119
            I
Sbjct: 1143 I 1143


>gi|403182531|gb|EJY57456.1| AAEL017213-PA [Aedes aegypti]
          Length = 1176

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 330/1148 (28%), Positives = 514/1148 (44%), Gaps = 150/1148 (13%)

Query: 34   MFDHCRQAKISYTGKLMADV-EFQYLDAGSPV--VRERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+ + + ++   PV    ++   G+ P+ML++  C L     
Sbjct: 110  MPNEARLRNLTYSAPLYVDITKTKIVEGQDPVETQHQKTFIGKIPIMLRSTYCLLSQLTD 169

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  Y  K+ +  
Sbjct: 170  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKYAY--KSEIRS 224

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL    +  G   +     G+  +         +P+ IV +AL    D +
Sbjct: 225  CLEHSSRPTSTLWCNMMARGGQSIKKSAIGQRVIAILPYVKQEIPIMIVFRALGFVADRD 284

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAE---VQDLSLTTRLQCLQHIGEHFQP 257
            I  H+   +D+           P + E VK  L E   VQ+ ++      L  IG   + 
Sbjct: 285  ILEHIIYDFDD-----------PEMMEMVKPSLDEAFVVQEQNVA-----LNFIGA--RG 326

Query: 258  VIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNP 313
               G+  +     A+ +++  +  H+  ++     K   L +M+ +L          D+ 
Sbjct: 327  ARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDR 386

Query: 314  DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKN 373
            D   N+ + L G L+ +  +   +  +++ +   Q  I + GK F+   LA IK      
Sbjct: 387  DHYGNKRLDLAGPLMALLFRGLFKSLVKEVRMYAQKFI-DRGKDFNL-ELA-IK------ 437

Query: 374  PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
             +K I   +   L TG    Q     Q RAG +    RL F   +S  R V+      G 
Sbjct: 438  -TKIITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG- 494

Query: 434  RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
            +    R+L    WG +CP  TP+G   GL+ ++     ++                + IL
Sbjct: 495  KLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPIL 543

Query: 494  RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VS 547
              L    M  +L ++  S       + ++G  VG+    + E++ A LR+L+      VS
Sbjct: 544  EFLEEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLTATLRKLRRQMDIIVS 600

Query: 548  AASVIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN-------- 597
              S+I D  D E+  +    G     L +  +    +R      L   +  N        
Sbjct: 601  EVSMIRDIRDREI-RIYTDAGRICRPLLIVENGSLLLRKNHVDMLKDRDYNNYGWQVLVA 659

Query: 598  ---IELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHN 651
               +E I   E+   M    P      +  A+  T  H EIHP  +L V A++ P+ DHN
Sbjct: 660  SGVVEYIDTLEEETVMIAMTPYDLKQDKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHN 719

Query: 652  QSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTN 711
            QSPRN YQ  M KQ MG  +     R D   + L  P  P+V T +       E P G N
Sbjct: 720  QSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGIN 779

Query: 712  AIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD-GNKVDRGQKLFRRNK 770
             IVA+L YTGY+ ED++ILN S+V+RG      Y++     S   G++ ++ +K  R+  
Sbjct: 780  TIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKKIGDQEEQFEKPNRQTC 839

Query: 771  DA--KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGS- 816
                 +L+  +D DG+             +G+ I   E    + D TT   R   R GS 
Sbjct: 840  QGMRNALYDKLDDDGIIAPGLRVSGDDVVIGKTITLPETDDDL-DGTTK--RYTKRDGST 896

Query: 817  -----ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDI 871
                 E+  VD V + + NS+   +   IR R  R P IGDKF+SRHGQKG C   +   
Sbjct: 897  FLRNSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQE 954

Query: 872  DMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNG 931
            DMPF+   G+ PD+IINPHA PSRMTI  L+E +  K GS  G+  DATPF ++V     
Sbjct: 955  DMPFT-CEGLTPDIIINPHAIPSRMTIGHLIECIQGKLGSNKGEIGDATPFNDAVN---- 1009

Query: 932  DTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSD 991
                      V ++   L+  G+   G EV+Y+G  G ++  ++F+GP YYQRL+HMV D
Sbjct: 1010 ----------VQKISTFLQEYGYQLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDD 1059

Query: 992  KFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVAD 1051
            K   R+ G +  + RQP++GR R GG+RFGEMERD  ++HGAA  L +RL   SD +   
Sbjct: 1060 KIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIH 1119

Query: 1052 VCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLA 1111
            VC+ CG +  A   +                      C  C+    +  V +PY  + L 
Sbjct: 1120 VCNFCGLIAIANMRN------------------NTFECKGCKNKTQISQVKLPYAAKLLF 1161

Query: 1112 AELAAMNI 1119
             EL AMNI
Sbjct: 1162 QELMAMNI 1169


>gi|324120656|dbj|BAJ78719.1| RNA polymerase II second largest subunit [Metylophorus sp. E-43]
          Length = 1176

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 317/1143 (27%), Positives = 510/1143 (44%), Gaps = 138/1143 (12%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN---FGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   +  +      G+ P+ML++  C L G   
Sbjct: 108  MPNEARLRNLTYSAPLYVDITKTIVKEGEEPIETQHQKSFIGKIPIMLRSTYCLLSGLTD 167

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  Y  K  +  
Sbjct: 168  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKYAY--KTEIRS 222

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  +  G   +     G+  +         +P+ IV +AL    D +
Sbjct: 223  CLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 282

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +D+           P + E VK  L E     +  +   L  IG   +    
Sbjct: 283  ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RGARP 327

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     A  +++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 328  GVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 387

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   ++ +++ +   Q  I + GK F+   LA IK       +K
Sbjct: 388  GNKRLDLAGPLLAFLFRGLFKNLMKEVRMFAQKFI-DRGKDFNL-ELA-IK-------TK 437

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   +   L TG    Q     Q RAG +    RL F   +S  R V+      G +  
Sbjct: 438  IITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 495

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G   GL+ ++     ++                + IL  L
Sbjct: 496  KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 544

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  S       + ++G  VG+    + E+++A LR+L+      VS  S
Sbjct: 545  EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVSEVS 601

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
            +I D  +      +  G      L     + +    ++++  E   N            +
Sbjct: 602  MIRDIRDREIRIYTDAGRICRPLLIVENGQLLLKRNHVNMLKEREFNNYGWQVLVASGVV 661

Query: 599  ELIGPFEQVFMEIRCP-DGGDGGRRNAFP----ATHEEIHPTGMLSVVANLTPYSDHNQS 653
            E I   E+  + I    D   GG+   +      TH EIHP  +L V A++ P+ DHNQS
Sbjct: 662  EYIDTLEEETVMIAMNLDDLRGGQEKEYAYCSTHTHCEIHPAMILGVCASIIPFPDHNQS 721

Query: 654  PRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAI 713
            PRN YQ  M KQ MG  +     R D   + L  P  P+V T +       E P G N+I
Sbjct: 722  PRNTYQSAMGKQAMGVYITNYHVRMDTLAHVLFYPHKPLVTTRSMEYLRFRELPAGINSI 781

Query: 714  VAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD-GNKVDRGQKLFRRNKDA 772
            VA+L YTGY+ ED++ILN S+V+RG      Y++     S   G++ ++ +K  R+    
Sbjct: 782  VAILCYTGYNQEDSVILNASAVERGYFRSCFYRSYKDSESKRIGDQEEQFEKPTRQTCQG 841

Query: 773  --KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGS 816
               +++  +D DG+   G  +   +       ++ D   +   T  R          + S
Sbjct: 842  MRNAMYDKLDDDGIITPGVRVSGDDVVIGKTITLPDTDDDLEGTTRRFTKRDASTFLRNS 901

Query: 817  ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS 876
            E+  VD V + + N++   +   IR R  R P IGDKF+SRHGQKG C   +   DMPF+
Sbjct: 902  ETGCVDQVMLTL-NAEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT 959

Query: 877  GVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTD 936
               G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF ++V          
Sbjct: 960  -CEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVN--------- 1009

Query: 937  ESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVR 996
                 V ++  +L+  G++  G E++Y+G  G ++  ++F+GP YYQRL+HMV DK   R
Sbjct: 1010 -----VQKISTLLQEYGYHLRGNELMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSR 1064

Query: 997  STGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLC 1056
            + G +  + RQP++GR R GG+RFGEMERD  ++HGAA  L +RL   SD +   VC+LC
Sbjct: 1065 ARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNLC 1124

Query: 1057 GSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAA 1116
            G +  A   +                      C  C+    +  V +PY  + L  EL +
Sbjct: 1125 GLIAIANLRN------------------NTFECKGCKNKTQISQVRLPYAAKLLFQELMS 1166

Query: 1117 MNI 1119
            MNI
Sbjct: 1167 MNI 1169


>gi|91090964|ref|XP_974653.1| PREDICTED: similar to AGAP003648-PA [Tribolium castaneum]
 gi|270013197|gb|EFA09645.1| hypothetical protein TcasGA2_TC011771 [Tribolium castaneum]
          Length = 1175

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 321/1155 (27%), Positives = 511/1155 (44%), Gaps = 164/1155 (14%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   +    ++   G+ P+ML++  C L G   
Sbjct: 109  MPNEARLRNLTYSAPLYVDITKTIVKDGEDPIETQHQKTFIGKIPIMLRSTYCLLNGLTD 168

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  Y  K+ +  
Sbjct: 169  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGK--YAFKSEIRS 223

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  +  G   +     G+  +         +P+ IV +AL    D +
Sbjct: 224  CLEHSSRPTSTLWVNMMARGGQAIKKAAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 283

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +++           P + E VK  L E     +  +   L  IG   +    
Sbjct: 284  ILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNIALNFIGT--RGARP 328

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     A  +++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 329  GVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   ++ +++ +   Q  I + GK F+  +LA IK       +K
Sbjct: 389  GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFI-DRGKDFNL-DLA-IK-------TK 438

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   +   L TG    Q     Q RAG +    RL F   +S  R V+      G +  
Sbjct: 439  LITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 496

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G   GL+ ++     ++                + IL  L
Sbjct: 497  KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  S       + ++G  VG+    + E+++A LR+L+      VS  S
Sbjct: 546  EEWSM-ENLEEIAPSAIANATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVSEVS 602

Query: 551  VIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------------RNISLPSEESQ 596
            +I D  D E+               ++T   +  RP+            R+I +  E   
Sbjct: 603  MIRDIRDREI--------------RIYTDAGRICRPLLIVENGTLLLKKRHIDMLKEREY 648

Query: 597  N------------IELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVV 641
            N            +E I   E+   M    PD     +  A+  T  H EIHP  +L V 
Sbjct: 649  NNYGWQVLVASGVVEYIDTLEEETVMIAMSPDDLRQEKEYAYCTTYTHCEIHPAMILGVC 708

Query: 642  ANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKY 701
            A++ P+ DHNQSPRN YQ  M KQ MG  +     R D   + L  P  P+V T +    
Sbjct: 709  ASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYL 768

Query: 702  GIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVD 760
               E P G N+IVA+  YTGY+ ED++ILN S+V+RG      Y++ +  +    G++ +
Sbjct: 769  RFRELPAGINSIVAIACYTGYNQEDSVILNASAVERGFFRSVFYRSYKDAESKRIGDQEE 828

Query: 761  RGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSI----------YDKTTNSW 808
            + +K  R+       +L+  +D DG+   G  +   +                D TT  +
Sbjct: 829  QFEKPTRQTCQGMRNALYDKLDDDGIIAPGIRVSGDDVVIGKTMTLPENDDELDGTTKRF 888

Query: 809  RTNSR----KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVC 864
                     + SE+  VD V + + NS+   +   IR R  R P IGDKF+SRHGQKG C
Sbjct: 889  TKRDASTFLRNSETGVVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTC 946

Query: 865  SQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFAN 924
               +   DM F+   G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF +
Sbjct: 947  GIQYRQEDMIFT-CEGLTPDIIINPHAIPSRMTIGHLIECIQGKVSANKGEIGDATPFND 1005

Query: 925  SVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQR 984
            +V               V ++  +L+  G+   G EV+Y+G  G ++  +IF+GP YYQR
Sbjct: 1006 AVN--------------VQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQIFLGPTYYQR 1051

Query: 985  LRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTC 1044
            L+HMV DK   R+ G +  + RQP++GR R GG+RFGEMERD  ++HGAA  L +RL   
Sbjct: 1052 LKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEV 1111

Query: 1045 SDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMP 1104
            SD +   VC+ CG +  A   +                      C  C+    +  V +P
Sbjct: 1112 SDQYRIHVCNFCGLIAIANMRN------------------NTFECKGCKNKTQISQVRLP 1153

Query: 1105 YVFRYLAAELAAMNI 1119
            Y  + L  EL +MNI
Sbjct: 1154 YAAKLLFQELMSMNI 1168


>gi|18977936|ref|NP_579293.1| DNA-directed RNA polymerase subunit B [Pyrococcus furiosus DSM 3638]
 gi|397652057|ref|YP_006492638.1| DNA-directed RNA polymerase subunit B [Pyrococcus furiosus COM1]
 gi|18893706|gb|AAL81688.1| DNA-directed RNA polymerase subunit b [Pyrococcus furiosus DSM 3638]
 gi|393189648|gb|AFN04346.1| DNA-directed RNA polymerase subunit B [Pyrococcus furiosus COM1]
          Length = 1117

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 331/1207 (27%), Positives = 529/1207 (43%), Gaps = 212/1207 (17%)

Query: 15   LVRHHIESFDYMLDEGLSEMFDHCRQAK-------ISYTGKLMADVEFQY---------- 57
            LVR H++S++  ++ GL E+ +     K       + +    + + EFQ           
Sbjct: 27   LVRQHLDSYNAFIERGLQEVVNEFGGIKPDIPDFEVKFGKIRVGEPEFQEPHGQRKPLYP 86

Query: 58   LDA-------GSPVVRE-------------RFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            +DA        +P+  E                 G+ P+MLK++ C L G   ++L+ L 
Sbjct: 87   MDARIRNLTYAAPLYLEMIPVIKGVEQDPVEVRIGELPIMLKSKVCRLYGLSDEELIKLG 146

Query: 98   EEAAEMGGYFILNGLERVFRSV--ILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
            E+  + GGYFI+NG ERV  S+  I P +    ++V     +R+E Y  K    R   + 
Sbjct: 147  EDPKDPGGYFIINGSERVIVSIEDIAPNR----TLVEKD--ERQEKYIAKVFSYRHGYRA 200

Query: 156  QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIV--LKALVDTNDLEIFNHLTCCYDEKY 213
              +V  +   +L        ++       PV  V  ++AL    D +I            
Sbjct: 201  LVAVERRKDGIL--------YVDIPNVPKPVKFVYVMRALGLERDKDIVE---------- 242

Query: 214  KKEKGAVGSPLVSERVKIILAEVQDLS-LTTRLQCLQHIGEHFQPVIDGLQSESYYAVAE 272
                 AVG+    E  +I+   ++D S +TT+ + L+ IG+   P   G   E     AE
Sbjct: 243  -----AVGND--PEVQQIMFDNLEDASDITTQQEALEFIGKLVAP---GQAREYRLKRAE 292

Query: 273  TVIRDYIFVHL----NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
             VI + +  H+     D   K   L  M  K+  L       D+ D   N+ + L G L+
Sbjct: 293  YVIDNNLLPHMGVSPEDRIKKAYYLGMMALKVIELSLGRRPEDDKDHYANKRLRLAGDLL 352

Query: 329  TIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKT 388
                +      ++  +  +    +  G K+ F N+              I  SI   + T
Sbjct: 353  KDLFRVAFSQLVKDIQYQMTKTYQRKGDKYTFGNIHRF-----------IRNSIRPDVLT 401

Query: 389  GRL--ATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESW 446
             R+  A  TG     R G +   +R N++  +S  R V            + R L    W
Sbjct: 402  ERIEHALATGAWPGGRTGVSQLLDRTNYMSTLSHLRRVTSPLDREQPHFEA-RDLHGTHW 460

Query: 447  GFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLP 506
            G +CP  TP+G  CGL+ ++    ++ +       IR++          L+ +G++P   
Sbjct: 461  GRICPTETPEGPNCGLVKNLALMAQITTAVPEE-EIREY----------LMSLGIVPIE- 508

Query: 507  KLVKSGPPAVLSVLLDGRVVGVIPSSE--IEKVVAHLRRLKVSAASVIP--DDLEVGYVP 562
              V+   P +  V L+G ++G I   +  ++++    R  K+S    +   +D++  YV 
Sbjct: 509  --VRRPDPTLWRVYLNGVLIGTIEDGKALVQRIRQDRRSGKISDVINVAYYEDVKEVYVN 566

Query: 563  LSLGGAY-PGLYLFTSPPKFVRP-VRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGG 620
               G    P + +    PK  +  V+ +     +  ++  +G  E +  E          
Sbjct: 567  SDDGRVRRPLIIVENGVPKLTKEHVQAVKEGRLKWSDLIKMGIIEYLDAE---------E 617

Query: 621  RRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFS 670
              NA+ A          TH E+ P  +L + A+L PY +HN +PRN Y   MAKQ++G  
Sbjct: 618  EENAYVAMWPWEVTEEHTHLELMPAAILGLPASLVPYPEHNAAPRNTYGAGMAKQSLGLG 677

Query: 671  VQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMIL 730
                + R D + + L  PQ P+V +      G ++ P G N +VAVLAY GY+MEDA+I+
Sbjct: 678  WANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYQGYNMEDAIII 737

Query: 731  NKSSVDRGMCHGQIY-------------QTETIDLSDDGNKVDRGQKLFRRNKDAKSLHS 777
            NK+S++RG+     +             QT+  ++ D   +  RG+K +R          
Sbjct: 738  NKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIPDPTVRGYRGEKYYRN--------- 788

Query: 778  VIDSDGLPY-----------VGQMIHP------GEPYCSIYDKTTNSWRTNSRKGSESVF 820
             +D DGL +           VG+   P      G    S+ ++   S    + + SE   
Sbjct: 789  -LDEDGLIFPESKVEGKDVLVGRTSPPRFLEERGLGTVSLQERRETS---VAVRPSEKGV 844

Query: 821  VDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTG 880
            VD V +    + +  +   +  R  R P +GDKF+SRHGQKGV   + P  DMP++  +G
Sbjct: 845  VDKVII--TETGDGTKLVKVTVRDLRIPELGDKFASRHGQKGVIGLIVPQEDMPWTE-SG 901

Query: 881  MRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKS 940
            + PDLI+NPH  PSRMT+  L+E++  K  SL G+ +D T F    ++            
Sbjct: 902  IVPDLIVNPHGIPSRMTVGQLIEAIGGKVASLKGRRVDGTAFIGEPEEKLRKELE----- 956

Query: 941  LVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGT 1000
                        GF + G E++Y G+ G  L  +IFIG +YYQRL HMV+DK   RS G 
Sbjct: 957  ----------ELGFKHTGREIMYDGITGKRLEADIFIGVIYYQRLHHMVADKIHARSRGP 1006

Query: 1001 MDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVL 1060
            +  +T+QP +GR R GG+RFGEMERD L+ HGAA LL +RL   SD     VC  CG + 
Sbjct: 1007 VQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIA 1066

Query: 1061 TATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIK 1120
                +  ++R              ++V C  C   + +  V M Y F+ L  EL AM I+
Sbjct: 1067 ----LEDKRR--------------RRVYCPVCGEEERISKVEMSYAFKLLLDELKAMVIR 1108

Query: 1121 ITLQLGD 1127
              L L +
Sbjct: 1109 PKLNLSE 1115


>gi|357621065|gb|EHJ73034.1| hypothetical protein KGM_12615 [Danaus plexippus]
          Length = 1176

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 321/1141 (28%), Positives = 501/1141 (43%), Gaps = 136/1141 (11%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +      +    ++   G+ P+ML++  C L     
Sbjct: 109  MPNEARLRNLTYSAPLYVDITKTIVKENEDPIETQHQKTFIGKIPIMLRSTYCLLSNLTD 168

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V     L  Q    +     F  +   Y  K  +  
Sbjct: 169  RDLTELNECPLDPGGYFIINGSEKV-----LIAQEKMATNTVYVFSMQGGKYAYKTEIRS 223

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  +  G   +     G+  +         +P+ IV +AL    D +
Sbjct: 224  CLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIVAIVPYIKQEIPIMIVFRALGFVADRD 283

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +D+           P + E VK  L E     +  +   L  IG   +    
Sbjct: 284  ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALSFIGA--RGARP 328

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     A  +++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 329  GVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   ++ L++ +   Q  I + GK F+   LA IK       +K
Sbjct: 389  GNKRLDLAGPLLAFLFRGLFKNLLKEVRMYAQKFI-DKGKDFNL-ELA-IK-------TK 438

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   +   L TG    Q     Q RAG +    RL F   +S  R V+      G +  
Sbjct: 439  IITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 496

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G   GL+ ++     ++                + IL  L
Sbjct: 497  KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  S       + ++G  VG+    + E+++A LR+L+      VS  S
Sbjct: 546  EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVSEVS 602

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
            +I D  +      +  G      L       +   ++I    E   N            +
Sbjct: 603  MIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKKHIDQLKERDYNNYGWQNLVASGVV 662

Query: 599  ELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQSPR 655
            E I   E+   M    PD     +  A+  T  H EIHP  +L V A++ P+ DHNQSPR
Sbjct: 663  EYIDTLEEETVMIAMNPDDLQQIKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPR 722

Query: 656  NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
            N YQ  M KQ MG  +     R D   + L  P  P+V T +       E P G N+IVA
Sbjct: 723  NTYQSAMGKQAMGVYITNFHVRMDTLAHVLFYPHKPLVTTRSMEYLRFRELPAGINSIVA 782

Query: 716  VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD-GNKVDRGQKLFRRNKDA-- 772
            +L YTGY+ ED++ILN S+V+RG      Y++     S   G++ ++ +K  R+      
Sbjct: 783  ILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKRIGDQEEQFEKPTRQTCQGMR 842

Query: 773  KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSR---KGSES 818
             +L+  +D DG+             +G+ I   E    +   T    + ++    + SE+
Sbjct: 843  NALYDKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELEGTTKRFTKRDASTFLRNSET 902

Query: 819  VFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGV 878
              VD V + + NS+   +   IR R  R P IGDKF+SRHGQKG C   +   DMPF+  
Sbjct: 903  GIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT-C 959

Query: 879  TGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDES 938
             G+ PD+IINPHA PSRMTI  L+E +  K  S  G+  DATPF ++V            
Sbjct: 960  EGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVN----------- 1008

Query: 939  KSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRST 998
               V ++  +L+  G++  G EV+Y+G  G ++  ++F+GP YYQRL+HMV DK   R+ 
Sbjct: 1009 ---VQKISSLLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRAR 1065

Query: 999  GTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGS 1058
            G +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +RL   SD +   VC+ CG 
Sbjct: 1066 GPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGL 1125

Query: 1059 VLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMN 1118
            +  A   +                      C  C+    +  V +PY  + L  EL +MN
Sbjct: 1126 IAIANLRN------------------NTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 1167

Query: 1119 I 1119
            I
Sbjct: 1168 I 1168


>gi|378755195|gb|EHY65222.1| DNA-directed RNA polymerase II subunit RPB2 [Nematocida sp. 1 ERTm2]
          Length = 1137

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 312/1097 (28%), Positives = 493/1097 (44%), Gaps = 130/1097 (11%)

Query: 67   ERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRS-------- 118
            +R   G  P+ML++  C     D + +  ++E   + GGYFI+NG E+V  +        
Sbjct: 127  KRMPIGSIPIMLRSLYCVYSNTDDKDMNRIEECTYDQGGYFIVNGSEKVLIAHERMASNL 186

Query: 119  VILPKQNYPMSMVRSSFRDRREGYTDK---AVVIRCVRKDQSSVTLKLYYLLNGSVRLGF 175
            V + K+  P   + ++       +  +   ++ IR V +   + +   Y+L         
Sbjct: 187  VYIFKKAPPSPYLYTAEMRSVPDHGLRLPSSLTIRLVARSSDNASGGGYFLRA------- 239

Query: 176  WLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAE 235
             L   +  +PV ++ +AL   +D EI  H+  CYD     E  ++  P + E   I    
Sbjct: 240  LLPHAKQDVPVVVIFRALGFVSDKEILEHI--CYDFS-DTEMLSMLRPSIEEAFVI---- 292

Query: 236  VQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDN----NDKFN 291
             QD  +      L +IG+   P   G   E     A+ + +     H+         K  
Sbjct: 293  -QDQGVA-----LDYIGKRVAPA--GFSKEKRIKFAKDLFQREFLPHVGTKEFCETKKAY 344

Query: 292  LLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEI 351
            LL + + KL  +       ++ D    + + L G L+    +   +    +  K +Q  I
Sbjct: 345  LLGYTINKLLMVALGRRSEEDRDHYGRKRLDLAGPLMAGLFRMLFKKMSNELAKYMQRCI 404

Query: 352  ENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAER 411
            + N    D   +  ++       +  +   +   L TG    Q+   +Q RAG      R
Sbjct: 405  DGNK---DLNLIVGLR-------TSTLTNGLRYSLATGNWGEQSK-SMQARAGVAQVLNR 453

Query: 412  LNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCR 471
             N++  +S  R V+      G +    R+L    WG +CP  TP+G+ CGL+ +      
Sbjct: 454  YNYISTLSHLRRVNTPIGRDG-KLAKPRQLHSSHWGMVCPAETPEGQACGLVKNFALMSH 512

Query: 472  VASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPS 531
            ++   +S            SI+  L+    +  L ++  +       VL++G  VGV  S
Sbjct: 513  ISVGSNS------------SIVVELLEECGLEGLEEVSPTAIAGATKVLVNGSWVGVHRS 560

Query: 532  -SEIEKVVAHLRRL-KVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPP------KFVR 583
              ++   + +LRR  ++S+   I  DL    + ++  G      LF           F+ 
Sbjct: 561  PDDLIGTLKYLRRSGELSSEIGIVRDLREKEIRINTDGGRACRPLFIVEKGVLRIEHFLE 620

Query: 584  PVRNISLPSEESQN---IELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGML 638
              R+ +   +E      +E +   E+    + ++  D     R      TH EI P  ML
Sbjct: 621  ANRHRAFTWDELMADGCVEFLDVEEEETAMIAVKTSDL----RNTEIMYTHCEIQPATML 676

Query: 639  SVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTY 698
             V A++ P+ DHNQSPRN YQ  M KQ MG        R D     L  PQ P+V T + 
Sbjct: 677  GVCASVVPFPDHNQSPRNTYQSAMGKQAMGMYATNFLMRMDSLSNVLCYPQKPLVITQSM 736

Query: 699  TKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGN- 757
                  E P+G NA+VA+  Y+GY+ ED++++N+ +VDRG+     Y+T + D+      
Sbjct: 737  NFLQFRELPSGQNAMVAIACYSGYNQEDSVVMNRGAVDRGLFRSFFYRTYS-DMESRTKP 795

Query: 758  -------KVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWR- 809
                   K DR  +  +R K+A   +  +D DGL   G  +   +        T + ++ 
Sbjct: 796  EEQECFMKPDR--RSVQRMKNAN--YEKLDIDGLVPPGTRVSGEDVLIGKAVSTPDGYKD 851

Query: 810  -TNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLW 868
             + + +G+ES  VD V +  K+     + A IR R  R P +GDKF+SRHGQKG    + 
Sbjct: 852  ASTTMRGTESGVVDRVILTTKDGY---RYARIRVRSARTPQMGDKFASRHGQKGTIGIML 908

Query: 869  PDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKK 928
               DMPF+   G+ PD+IINPHA PSRMTI  L+E +  K   + GK  DATPF      
Sbjct: 909  SPEDMPFTA-DGITPDIIINPHAIPSRMTIGHLVECLLGKVSCMTGKEGDATPF------ 961

Query: 929  TNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHM 988
                TG       V+E+ E L+  G+   G EV+YSG  G ++  +IFIGP YYQRL+HM
Sbjct: 962  ----TGLS-----VEEISEELQKHGYQKRGFEVMYSGFTGRKMRSQIFIGPTYYQRLKHM 1012

Query: 989  VSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYH 1048
            V+DK   R+ G +  +TRQP++GR R GG+RFGEMERD +++HGAA  L +RL   SD  
Sbjct: 1013 VADKIHARAHGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGAAMFLKERLCDVSDKF 1072

Query: 1049 VADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFR 1108
               +C+ CG          + R +                C  C T   +  V MPY F+
Sbjct: 1073 EVFICNDCGLFCAGN----KDRGL--------------YLCQLCGTRTNVSMVYMPYAFK 1114

Query: 1109 YLAAELAAMNIKITLQL 1125
             L  E+  M I + ++L
Sbjct: 1115 LLVQEMMTMCISVQMRL 1131


>gi|332796432|ref|YP_004457932.1| RNA polymerase subunit B [Acidianus hospitalis W1]
 gi|332694167|gb|AEE93634.1| RNA polymerase subunit B [Acidianus hospitalis W1]
          Length = 1123

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 330/1206 (27%), Positives = 530/1206 (43%), Gaps = 201/1206 (16%)

Query: 13   RELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRE----- 67
            R LVR H++SF+  +   L E+ D   + +    G     ++   +  G P VRE     
Sbjct: 18   RGLVRQHLDSFNDFIKNKLQEIIDEQGEIETEIPG---LKIKLGKIRVGKPRVREADRGD 74

Query: 68   -----------------------------------RFNFGQFPVMLKTRRCHLQGADSQK 92
                                                   G  P+MLK+         ++K
Sbjct: 75   REITPMEARLRNLTYAAPIYLTMIPVENNIEGEPTEVYIGDLPIMLKSVADPTADLPAEK 134

Query: 93   LVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCV 152
            LV + E+  + GGYFI+NG E+V    I+ +++   + V           T  A +I   
Sbjct: 135  LVEIGEDPKDPGGYFIINGTEKV----IVTQEDLATNRVLVDEGKSGSNVTHTAKIISST 190

Query: 153  RKDQSSVTLKLYYLLNGSVRLGF-WLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDE 211
               +  +T++   L + ++ + F  + G+   +P  I+++AL    D +I       +DE
Sbjct: 191  AGYRVPITIE--RLRDSTIHVSFPAVPGR---IPFAILMRALGLETDRDI--TFAVSFDE 243

Query: 212  KYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVA 271
            + + E              ++ +  Q  S+TT+   L  IG     V  G + E+    A
Sbjct: 244  EIQNE--------------LLPSLEQASSITTQEDALDFIGNR---VAIGQKRENRIERA 286

Query: 272  ETVIRDYIFVHLN----DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
            E V+  Y   HL     D   K   L + + KL  L       D+ D   N+ + L G L
Sbjct: 287  EQVLDKYFLPHLGLTPADRKKKAYYLGYAVSKLIELQLGRREPDDKDHYANKRLKLAGDL 346

Query: 328  ITIYLKEKLEDWLRKGKKLIQ--DEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
             +   +   + ++   K L+   ++ +  G++     L     + E+             
Sbjct: 347  FSSLFRVAFKAFV---KDLVYQLEKSKVRGRRLTLNALVRPDIITERI------------ 391

Query: 386  LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFA-GLRTTSVRKLLPE 444
                R A  TG  +  R G +   +R N+L  +S  R V   +S A G      R L   
Sbjct: 392  ----RHAMATGNWVGGRTGVSQLLDRTNWLSMLSHLRRVI--SSLARGQPNFEARDLHGT 445

Query: 445  SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
             WG +CP  TP+G   GL+ ++    +++   + +            + ++L  +G+IP 
Sbjct: 446  QWGRMCPFETPEGPNSGLVKNLALLAQISVGINDK-----------IVEKMLYELGVIP- 493

Query: 505  LPKLVK-----SGPPAVLS---VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDL 556
            L +L++       P +  +   V+L+GR+VG  P+ E    +A+  R K  A   I D++
Sbjct: 494  LEELIRKIDEGEDPSSYTNWSKVILNGRLVGYYPNGE---ELANKMREKRRAGE-ISDEI 549

Query: 557  EVGYVPLSLGGAYPGLYLFTSPPKFVRP--VRNISLPSEESQNIELIGPFEQVF------ 608
             V ++   +   Y  +Y+ +   +  RP  V     P    ++I+ +   E  F      
Sbjct: 550  NVAHI---VTDTYDEVYVNSDSGRVRRPLIVVKDGKPLVTEEDIQRLKKGEITFDTLVKE 606

Query: 609  MEIRCPDGGDGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMY 658
             +I   D  +    NA+ A          TH EI    +L + A++ PY +HNQSPRN Y
Sbjct: 607  GKIEFLDAEE--EENAYIALEPSKVTPEHTHLEIWTPAILGITASIIPYPEHNQSPRNTY 664

Query: 659  QCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLA 718
            Q  MAKQ +G      + R D + + L  PQ P+V+T      G +  P G NAI+AV++
Sbjct: 665  QSAMAKQALGLYASNYQLRTDSRAHFLHYPQKPLVQTRALDIIGYNNRPAGENAILAVMS 724

Query: 719  YTGYDMEDAMILNKSSVDRGMCHGQIY-------------QTETIDLSDDGNKVDRGQKL 765
            +TGY+MEDA+I+NKSSV+RGM     +             Q + I L + G +  +G   
Sbjct: 725  FTGYNMEDAIIMNKSSVERGMFRSTFFRLYSAEEIKYPGGQEDKIQLPEPGVRGYKGSDY 784

Query: 766  FRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTN----SRKGSESVFV 821
            ++   +   +   ++  G   +   + P        + +    + +    +R G + + V
Sbjct: 785  YKSLDENGIVPPEVEVKGGDVLIGKVSPPRFLQEFKELSPEQAKRDTSVITRHGEKGI-V 843

Query: 822  DYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGM 881
            D V +   +  N  +   +R R  R P +GDKF++RHGQKGV   L P  DMP++ V G+
Sbjct: 844  DLVLITETSEGN--KLVKVRVRDLRIPELGDKFATRHGQKGVIGMLIPQADMPYT-VKGI 900

Query: 882  RPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSL 941
             PD+I+NPH+ PSRMT+  ++E++A K  +L GK +DATPF N+                
Sbjct: 901  VPDIILNPHSLPSRMTLGQIMEALAGKYAALSGKTVDATPFYNTP--------------- 945

Query: 942  VDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTM 1001
            ++EL + L   GF   G EV+Y G  G ++   I  G VYYQ+L HMV+DK   R+ G +
Sbjct: 946  IEELQKKLLDFGFLPDGTEVVYDGRTGQKVKGRILYGVVYYQKLHHMVADKMHGRARGPI 1005

Query: 1002 DQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLT 1061
              +TRQP +GR R GG+RFGEMERD L+ +GAA ++ DRL   SD     VC  CG    
Sbjct: 1006 QILTRQPTEGRAREGGLRFGEMERDCLIGYGAAMVIKDRLLDNSDKTTVYVCEQCGY--- 1062

Query: 1062 ATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKI 1121
                         IG     +   K  C        +  V + Y F+ L  EL +M I  
Sbjct: 1063 -------------IGWY--DKNKNKYVCPIHGDKANLYPVTISYAFKLLLQELMSMVISP 1107

Query: 1122 TLQLGD 1127
             L LGD
Sbjct: 1108 RLILGD 1113


>gi|255073731|ref|XP_002500540.1| predicted protein [Micromonas sp. RCC299]
 gi|226515803|gb|ACO61798.1| predicted protein [Micromonas sp. RCC299]
          Length = 1178

 Score =  371 bits (953), Expect = e-99,   Method: Compositional matrix adjust.
 Identities = 319/1116 (28%), Positives = 490/1116 (43%), Gaps = 166/1116 (14%)

Query: 71   FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRS---------VIL 121
            FG+ P+ML+++ C L     ++L  L E   + GGYFI+NG E+V  +          + 
Sbjct: 156  FGKVPIMLRSQYCSLHDHTDKELTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVF 215

Query: 122  PKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKE 181
             K+     M  +  R   E     A          SS   +L +        G       
Sbjct: 216  EKRQPSKYMWVAECRSSPESGARAA----------SSCMARLCHAPGTKDEAGVISVTIP 265

Query: 182  YL---LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQD 238
            Y+   +P+ +V +AL    D +I  HL       Y  E   +   L +   +  + + QD
Sbjct: 266  YIRTEIPLFVVFRALGFVADKDILEHLV------YDFEDHEMMQLLRNSIEEAQVIQSQD 319

Query: 239  LSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDN----NDKFNLLI 294
            ++L         IG+    V  G+        A  +++  +  H+  N      K   L 
Sbjct: 320  VAL-------DFIGKRGSAV--GVTRPKRIQYAREILQKELLPHVGVNEGCETKKAYFLG 370

Query: 295  FMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENN 354
            +++ +L          D+ D   N+ + L G LI +  ++     + K  +L      ++
Sbjct: 371  YIVNRLLLCALGRKKEDDRDHFGNKRMDLSGPLIAMLFRQLFRK-VTKDVRLYSQRCIDS 429

Query: 355  GKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNF 414
            GK      LA +K       +K I + ++  L TG    Q   D+  RAG +    RL+F
Sbjct: 430  GKDIQL-TLA-VK-------AKTITSGLKYSLATGNWGAQGAQDI--RAGVSQVLNRLSF 478

Query: 415  LRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVAS 474
               +S  R ++      G +    R+L    WG +CP  TP+G+  GL+ +++  C V+ 
Sbjct: 479  SSTLSHLRRLNSPIGREG-KLAKPRQLHNSHWGMVCPAETPEGQAVGLVKNLSLMCLVSV 537

Query: 475  YYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLS---VLLDGRVVGVIPS 531
               S   +    +                S+  L +  P  +++   + ++G  VGV   
Sbjct: 538  GSPSAPLLEFLEEW---------------SMENLEEISPSVIVNATKIFVNGVWVGV--H 580

Query: 532  SEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV-----R 586
             E  ++V  LR L+      I    EVG V      A   L L+T   + +RP+      
Sbjct: 581  REPAQLVQTLRNLRRKLDITI----EVGVVH---DIALRELRLYTDYGRCIRPLFIVEDN 633

Query: 587  NISLPSEESQNI---ELIGPFEQVFMEIRCPDGGD-----------------GGRRNAFP 626
            ++ +  ++ Q +   E+ G      +   C +  D                 G R NA P
Sbjct: 634  HLVIKKKDIQMLYEKEITGYTWNDLVATGCIEYVDTEEEETTMIAMTIDELVGQRINAEP 693

Query: 627  A------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQ 680
                   TH EIHP+ +L + A++ P+ DHNQSPRN YQ  M KQ MG  V   + R D 
Sbjct: 694  GGVKHMYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGMYVTNFQIRMDT 753

Query: 681  KLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMC 740
              Y L  PQ P+V T         E P G N +V ++ YTGY+ ED++I+N+SS+DRG+ 
Sbjct: 754  LAYVLFYPQKPLVTTRAMEHLHFRELPAGVNVVVGIMCYTGYNQEDSVIMNQSSIDRGLF 813

Query: 741  HGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAK-----SLHSVIDSDGLPYVGQMIH--- 792
                Y++   +    G+     ++L R ++D         +  +D DGL   G  +    
Sbjct: 814  RSIFYRSFKDEEKKQGSLTK--EELERPSRDTTLGMRHGTYDKLDDDGLICPGTRVSGED 871

Query: 793  ---------PGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFR 843
                     P +   ++  + T    +   K SE+  +D V +   N + L +   IR R
Sbjct: 872  IIIGKTSPLPEDDPSAVSKRFTKRDCSTGMKNSETGIIDQVLL-TTNDQGL-RFVKIRVR 929

Query: 844  HTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLE 903
              R P +GDKFSSRHGQKG     +   DMPF+   G+ PD+I+NPHA PSRMTI  L+E
Sbjct: 930  SCRTPQVGDKFSSRHGQKGTIGMTYTQEDMPFT-CEGIVPDIIVNPHAIPSRMTIGQLVE 988

Query: 904  SVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLY 963
             +  K  ++ GK  DATPF               +   V+ + +ML  CG+   G EV+Y
Sbjct: 989  CLMGKVAAMMGKEGDATPF---------------TPVTVESISDMLHMCGYQKRGNEVMY 1033

Query: 964  SGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEM 1023
            +G  G +L  +IF+GP YYQRL+HMV DK   R  G +  +TRQP++GR R GG+RFGEM
Sbjct: 1034 NGHTGRKLEAKIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPMEGRSRDGGLRFGEM 1093

Query: 1024 ERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARA 1083
            ERD +++HGAA  L +RL   SD +   VC  CG +  A      K    E    P  R 
Sbjct: 1094 ERDCIISHGAAAFLKERLMDQSDAYRIHVCETCGLIAVANL----KNQTFECCKNPSERT 1149

Query: 1084 PKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
              KV             V MPY  + L  EL +M +
Sbjct: 1150 --KVV-----------QVMMPYACKLLFQELMSMAV 1172


>gi|387593606|gb|EIJ88630.1| DNA-directed RNA polymerase II subunit RPB2 [Nematocida parisii
            ERTm3]
 gi|387597261|gb|EIJ94881.1| DNA-directed RNA polymerase II subunit RPB2 [Nematocida parisii
            ERTm1]
          Length = 1137

 Score =  371 bits (953), Expect = e-99,   Method: Compositional matrix adjust.
 Identities = 324/1144 (28%), Positives = 507/1144 (44%), Gaps = 142/1144 (12%)

Query: 28   DEGLSEMF-DHCRQAKISYTGKLMADVEFQYLDAGSPVVRER----FNFGQFPVMLKTRR 82
            D   S MF +  R   ++Y+  L  D+  +    G   V  R       G  P+ML++  
Sbjct: 84   DGRTSSMFPNDARVRSLTYSASLYIDI-VKTEHIGDEEVESRSYKKMPIGSIPIMLRSLY 142

Query: 83   CHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRS--------VILPKQNYPMSMVRSS 134
            C     D + +  ++E   + GGYFI+NG E+V  +        V + K++ P   + ++
Sbjct: 143  CVYSNTDDRDMNRIEECTYDQGGYFIVNGSEKVLIAHERMASNLVYIFKKSPPSPYLYTA 202

Query: 135  FRDRREGYTDK---AVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLK 191
                   +  +   ++ IR V +   S +        G   L   L   +  +PV ++ +
Sbjct: 203  EMRSVPDHGLRLPSSLTIRLVSRASDSAS-------GGGYLLRALLPHAKLDVPVVVIFR 255

Query: 192  ALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHI 251
            AL   +D EI  H+  CYD     E  ++  P + E   I     QD  +      L +I
Sbjct: 256  ALGFVSDKEILEHI--CYDFS-DTEMLSMLRPSIEEAFVI-----QDQGVA-----LDYI 302

Query: 252  GEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDN----NDKFNLLIFMLQKLFSLVDHT 307
            G+   P   G   E     A+ + +     H+         K  L  + + KL  +    
Sbjct: 303  GKRVAPA--GFSKEKRIKFAKDLFQKEFLPHVGTKEFCETKKAYLFGYTINKLLMVALGR 360

Query: 308  SVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIK 367
               ++ D    + + L G L+T   +   +    +  K +Q  I+ N    D   +  ++
Sbjct: 361  RSEEDRDHYGRKRLDLAGPLMTGLFRMLFKKMSNELAKYMQRCIDGNK---DLNLIVGLR 417

Query: 368  KVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRG 427
                   +  +   +   L TG    Q+   +Q RAG      R N++  +S  R V+  
Sbjct: 418  -------TSTLTNGLRYSLATGNWGEQSK-SMQARAGVAQVLNRYNYISTLSHLRRVNTP 469

Query: 428  ASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSK 487
                G +    R+L    WG +CP  TP+G+ CGL                   +++F+ 
Sbjct: 470  IGRDG-KLAKPRQLHSSHWGMVCPAETPEGQACGL-------------------VKNFAL 509

Query: 488  MRTSILRVLIGVGMIPSLPKLVKS----GPPAVL---SVLLDGRVVGVIPS-SEIEKVVA 539
            M    +     V +       ++      P A++    VL++G  VGV  S  ++   + 
Sbjct: 510  MSHVSVGTSSSVVVELLEECGLEGLEEVSPSAIVGATKVLVNGSWVGVHRSPDDLMGTLK 569

Query: 540  HLRRL-KVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNI 598
            +LRR  ++S+   I  DL    + ++  G      LF      +R  R +          
Sbjct: 570  YLRRSGELSSEIAIVRDLREKEIRINTDGGRACRPLFIVDKGVLRIERFLEANRHRKFTW 629

Query: 599  -ELIGPFEQVFMEIRCPDGG-----DGGRRNA-FPATHEEIHPTGMLSVVANLTPYSDHN 651
             EL+      F+++   +        G  +N     TH EI P  ML V A++ P+ DHN
Sbjct: 630  DELMADGCVEFLDVEEEETAMIAVKPGDLKNTDVMYTHCEIQPATMLGVCASVVPFPDHN 689

Query: 652  QSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTN 711
            QSPRN YQ  M KQ MG        R D     L  PQ P+V T +       E P+G N
Sbjct: 690  QSPRNTYQSAMGKQAMGMYATNFLMRMDSLSNVLCYPQKPLVITQSMNFLRFRELPSGQN 749

Query: 712  AIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGN--------KVDRGQ 763
            A+VA+  Y+GY+ ED++++N+ +VDRG+     Y+T + D+             K DR  
Sbjct: 750  AMVAIACYSGYNQEDSVVMNRGAVDRGLFRSFFYRTYS-DMESRTKPEEQECFMKPDR-- 806

Query: 764  KLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWR--TNSRKGSESVFV 821
            +  +R K+A   +  +D DGL   G  +   +        T + ++  + + +G+ES  V
Sbjct: 807  RSVQRMKNAN--YEKLDMDGLVPPGTRVSGEDVLIGKTVSTPDGYKDASTTMRGTESGVV 864

Query: 822  DYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGM 881
            D V +  K+     + A IR R  R P +GDKF+SRHGQKG    +    DMPF+   G+
Sbjct: 865  DRVILTTKDGY---RYARIRVRSARTPQMGDKFASRHGQKGTIGIMLSPEDMPFTA-DGI 920

Query: 882  RPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSL 941
             PD+IINPHA PSRMTI  L+E +  K   + GK  DATPF          TG       
Sbjct: 921  TPDIIINPHAIPSRMTIGHLVECLLGKVSCMSGKEGDATPF----------TGLS----- 965

Query: 942  VDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTM 1001
            V+E+ E L+  G+   G EV+YSG  G ++  +IFIGP YYQRL+HMV+DK   R+ G +
Sbjct: 966  VEEISEELQKHGYQKRGFEVMYSGFTGRKMRSQIFIGPTYYQRLKHMVADKIHARAHGPV 1025

Query: 1002 DQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLT 1061
              +TRQP++GR R GG+RFGEMERD +++HGAA  L +RL   SD     +C+ CG    
Sbjct: 1026 QILTRQPVEGRSRDGGLRFGEMERDCMISHGAATFLKERLCDVSDKFEVFICNDCGVFCA 1085

Query: 1062 ATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKI 1121
                  ++R +                C  C T   +  V MPY F+ L  E+ AM I +
Sbjct: 1086 GN----KERGL--------------YLCQLCGTRTSVSMVYMPYAFKLLVQEMMAMCISV 1127

Query: 1122 TLQL 1125
             ++L
Sbjct: 1128 QMRL 1131


>gi|324120618|dbj|BAJ78700.1| RNA polymerase II second largest subunit [Aposthonia japonica]
          Length = 1150

 Score =  371 bits (953), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 321/1144 (28%), Positives = 510/1144 (44%), Gaps = 142/1144 (12%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   +    ++   G+ P+ML++  C L G   
Sbjct: 84   MPNEARLRNLTYSAPLYVDITKTIVRDGEEPIETQHQKTFIGKIPIMLRSTYCLLNGLTD 143

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  Y  +   IR
Sbjct: 144  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKYAYKTE---IR 197

Query: 151  CVRKDQSSVTLKLYYLLNGSVRLGFWLQ----GKEYL---------LPVGIVLKALVDTN 197
              ++  S  T  L+  +N   R G  ++    G+  +         +P+ IV +AL    
Sbjct: 198  SCQEHSSRPTSTLW--VNMMARGGQSIKKSAIGQRIIAILPYIRQEIPIMIVFRALGFVA 255

Query: 198  DLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQP 257
            D +I  H+   +D+           P + E VK  L E     +  +   L  IG   + 
Sbjct: 256  DRDILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RG 300

Query: 258  VIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNP 313
               G+  E     A  +++  +  H+  ++     K   L +M+ +L          D+ 
Sbjct: 301  ARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDR 360

Query: 314  DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKN 373
            D   N+ + L G L+    +   ++ L K  ++   +  + GK F+   LA IK      
Sbjct: 361  DHYGNKRLDLAGPLLAFLFRGLFKN-LTKEVRMYAQKFIDRGKDFNL-ELA-IK------ 411

Query: 374  PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
             +K I   +   L TG    Q     Q RAG +    RL F   +S  R V+      G 
Sbjct: 412  -TKIITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG- 468

Query: 434  RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
            +    R+L    WG +CP  TP+G   GL+ ++         Y S G+          IL
Sbjct: 469  KLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMA-----YISVGS------QPAPIL 517

Query: 494  RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VS 547
              L    M  +L ++  S       + ++G  VG+    + E+++A LR+L+      VS
Sbjct: 518  EFLEEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVS 574

Query: 548  AASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN---------- 597
              S+I D  +      +  G      L       +   R++ +  E   N          
Sbjct: 575  EVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKRHVDMLKEREYNNYGWQVLVAQ 634

Query: 598  --IELIGPFEQ-VFMEIRCPDGGDGGRRNAF--PATHEEIHPTGMLSVVANLTPYSDHNQ 652
              +E I   E+   M     D     +  A+    TH EIHP  +L V A++ P+ DHNQ
Sbjct: 635  GVVEYIDTLEEETVMIAMSTDDLKQDKEFAYCNTYTHCEIHPAMILGVCASIIPFPDHNQ 694

Query: 653  SPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNA 712
            SPRN YQ  M KQ MG  +     R D   + L  P  P+V T +       E P G N+
Sbjct: 695  SPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINS 754

Query: 713  IVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVDRGQKLFRRNKD 771
            +VA+L YTGY+ ED++I+N S+V+RG      +++ +  +    G++ ++ +K  R+   
Sbjct: 755  VVAILCYTGYNQEDSVIMNASAVERGFFRSVFFRSYKDAESKRIGDQEEQFEKPTRQTCQ 814

Query: 772  A--KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSR---KG 815
                +L+  +D DG+             +G+ I   +    +   T    + ++    + 
Sbjct: 815  GMRNALYDKLDDDGIISPGIRVSGDDVVIGKTITLPDNEDELEGSTKRFTKRDASTFLRN 874

Query: 816  SESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPF 875
            SE+  VD V + + NS+   +   IR R  R P IGDKF+SRHGQKG C   +   DMPF
Sbjct: 875  SETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPF 932

Query: 876  SGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGT 935
            +   G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF ++V         
Sbjct: 933  T-CEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVN-------- 983

Query: 936  DESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQV 995
                  V ++  +L+  G+   G EV+Y+G  G ++  +IF+GP YYQRL+HMV DK   
Sbjct: 984  ------VQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHS 1037

Query: 996  RSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSL 1055
            R+ G +  + RQP++GR R GG+RFGEMERD  ++HGAA  L +RL   SD +   VC+ 
Sbjct: 1038 RARGPLQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNF 1097

Query: 1056 CGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELA 1115
            CG +  A                          C  C+    +  V +PY  + L  EL 
Sbjct: 1098 CGLIAIANL------------------RSNTFECKGCKNKTQISQVRLPYAAKLLFQELM 1139

Query: 1116 AMNI 1119
            +MNI
Sbjct: 1140 SMNI 1143


>gi|357120315|ref|XP_003561873.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
            [Brachypodium distachyon]
          Length = 1228

 Score =  371 bits (953), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 313/1144 (27%), Positives = 497/1144 (43%), Gaps = 149/1144 (13%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPV--VRERFNF-----GQFPVMLKTRRCHLQGADS 90
             R   ++Y+  L  DV ++ +  G     V E   +     G+ P+ML++  C L     
Sbjct: 154  ARLRNLTYSAPLYVDVSYRVVKKGHDCEEVTETMEYPKVFIGKVPIMLRSSYCTLFQQSE 213

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYF++NG E+V    ++ ++    + V   F+ R+         +R
Sbjct: 214  KDLTELGECPYDQGGYFVINGSEKV----LIAQEKMSTNHV-YVFKKRQPNKFAYVAEVR 268

Query: 151  CVRKDQSSVTLKLYYLL------NGSVRLGFWLQGKEYL---LPVGIVLKALVDTNDLEI 201
             + ++Q+     ++  +       G     +      Y+   +P+ IV +AL    D +I
Sbjct: 269  SMAENQNRPASSMFVRMLSRAGAKGGSSGQYIRATLPYIRADIPIIIVFRALGFVADKDI 328

Query: 202  FNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDG 261
              H+  CYD              + E ++  L E     +  +   L +IG+    V  G
Sbjct: 329  LEHI--CYD---------FSDTQMMELLRPSLEEA--FVIQNQQVALDYIGKRGATV--G 373

Query: 262  LQSESYYAVAETVIRDYIFVHLND----NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQ 317
            +  E     A+ +++  +  H+         K     +++ +L          D+ D   
Sbjct: 374  VTREKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLMCALGRRAEDDRDHYG 433

Query: 318  NQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQ 377
            N+ + L G L+    +       R  +  +Q  + +NGK        N++  ++   +K 
Sbjct: 434  NKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCV-DNGKD------VNLQFAIK---AKT 483

Query: 378  IGTSIETMLKTGRL--ATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
            I + ++  L TG    A Q G     RAG +    RL +   +S  R ++      G + 
Sbjct: 484  ITSGLKYSLATGNWGQANQAGT----RAGVSQVLNRLTYASTLSHLRRLNSPIGREG-KL 538

Query: 436  TSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV 495
               R+L    WG +CP  TP+G+ CGL+ ++     +                   IL  
Sbjct: 539  AKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYIT-----------VGSAANPILEF 587

Query: 496  LIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK----VSAASV 551
            L   G   +  ++  +  P    + ++G  VG+  + ++  +V  LRRL+    V+    
Sbjct: 588  LEEWG-TENFEEISPAVIPQAAKIFVNGCWVGIHRNPDL--LVKTLRRLRRQIDVNTEVG 644

Query: 552  IPDDLEVGYVPL--SLGGAYPGLYLFTS-----PPKFVRPVRNISLPSEESQN------I 598
            +  D+ +  + L    G     L++          K +R ++    P E   +      I
Sbjct: 645  VVRDIRLKELRLYTDYGRCSRPLFIVDGQRLLIKKKHIRALQQRETPDEGWHDLVAKGFI 704

Query: 599  ELIGPFEQ----VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQ 652
            E I   E+    + M I          + A+  T  H EIHP+ +L V A++ P+ DHNQ
Sbjct: 705  EYIDTEEEETTMISMTINDLVSARNNPQEAYSETYTHCEIHPSLILGVCASIIPFPDHNQ 764

Query: 653  SPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNA 712
            SPRN YQ  M KQ MG  V   + R D   Y L  PQ P+V T         + P G NA
Sbjct: 765  SPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 824

Query: 713  IVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA 772
            IVA+  Y+GY+ ED++I+N+SS+DRG      +++   +    G  V   ++  R N++ 
Sbjct: 825  IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVK--EEFGRPNREN 882

Query: 773  K-----SLHSVIDSDGLPYVGQMIH------------PGEPYCSIYDKTTNSWRTNSRKG 815
                    +  +D DGL   G  +             P +       + +    + S + 
Sbjct: 883  TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIPQDDAQGQATRYSKRDHSTSLRH 942

Query: 816  SESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPF 875
            SES  VD V +   N+  L +   +R R  R P IGDKFSSRHGQKG     +   DMP+
Sbjct: 943  SESGMVDQVLL-TTNADGL-RFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 1000

Query: 876  SGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGT 935
            + + G+ PD+I+NPHA PSRMTI  L+E +  K  +  GK  DATPF +           
Sbjct: 1001 T-IEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT--------- 1050

Query: 936  DESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQV 995
                  VD + + L  CG+   G E +Y+G  G +LT  IF+GP YYQRL+HMV DK   
Sbjct: 1051 ------VDNISKALHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRLKHMVDDKIHS 1104

Query: 996  RSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSL 1055
            R  G +  +TRQP +GR R GG+RFGEMERD ++AHGAA+ L +RL   SD +   VC  
Sbjct: 1105 RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAFFLKERLFDQSDAYRVHVCEK 1164

Query: 1056 CGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELA 1115
            CG +  A                          C  C+    +  V +PY  + L  EL 
Sbjct: 1165 CGLIAIANL------------------KKNSFECRGCKNKTDIVQVHIPYACKLLFQELM 1206

Query: 1116 AMNI 1119
            AM I
Sbjct: 1207 AMAI 1210


>gi|291241363|ref|XP_002740582.1| PREDICTED: DNA directed RNA polymerase II polypeptide B-like
            [Saccoglossus kowalevskii]
          Length = 1175

 Score =  371 bits (952), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 312/1142 (27%), Positives = 511/1142 (44%), Gaps = 139/1142 (12%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAG---SPVVRERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G        ++   G+ P+ML++  C L G   
Sbjct: 109  MPNEARLRNLTYSAPLYVDITKTIVKEGDEPQETQHQKTFIGKIPIMLRSTYCLLSGLTD 168

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   + +D +  YT +     
Sbjct: 169  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGECR--S 223

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL ++ +  G   +     G+  +         +P+ IV +AL   +D +
Sbjct: 224  CLEHSSRPTSTLWVHMMARGGQGVRKSAIGQRIVAALPYIRQEIPIMIVFRALGFVSDRD 283

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +D+           P + E VK  L E     +  +   L  IG   +    
Sbjct: 284  ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RGARP 328

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     A  +++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 329  GVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   ++ +++ +   Q  I + GK F+   LA IK       ++
Sbjct: 389  GNKRLDLAGPLLAFLFRHLFKNLMKEVRIYAQKFI-DKGKDFNL-ELA-IK-------TR 438

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   ++  L TG    Q     Q RAG +    RL F   +S  R ++      G +  
Sbjct: 439  IITDGLKYSLATGNWGEQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLA 496

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G+  GL+ ++     ++                + IL  L
Sbjct: 497  RPRQLHNTLWGMICPAETPEGQAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  S       + ++G  VG+    + E+++  L++L+      VS  S
Sbjct: 546  EEWSM-ENLEEIAASAINEATKIFVNGCWVGI--HRDPEQLMNTLKKLRRQMDIIVSEVS 602

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
            ++ D  E      +  G      L     K +   ++I +  E   N            +
Sbjct: 603  MVRDIREKEIRIYTDAGRICRPLLIVEKQKLLLKKKHIDMLKEREYNNYSWQDLVASGVV 662

Query: 599  ELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656
            E I   E+  V + +   D  + G       TH EIHP+ +L V A++ P+ DHNQSPRN
Sbjct: 663  EYIDTLEEETVMLAMTPDDLQEKGMGYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRN 722

Query: 657  MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
             YQ  M KQ MG  +     R D   + L  PQ P+V T +       E P G N+IVA+
Sbjct: 723  TYQSAMGKQAMGVYITNYHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAI 782

Query: 717  LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA---- 772
             +YTGY+ ED++I+N S+V+RG      Y++     S  G  +D+ +   + ++++    
Sbjct: 783  ASYTGYNQEDSVIMNLSAVERGFFRSVFYRSYRDQESKKG--LDQEEVFEKPDRESCQGM 840

Query: 773  -KSLHSVIDSDGLPYVGQMIHPGEPYCSIY-------DKTTNSWRTNSRKGS-------E 817
              +++  +D DG+   G  +   +             D+   + R  +++ S       E
Sbjct: 841  RMAVYDKLDDDGIIAPGSRVSGDDVLIGKTVTLPENDDELEGTTRRFTKRDSSTFMRRTE 900

Query: 818  SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
            +  VD V V +       +   I+ R  R P IGDKF+SRHGQKG C   +   DMPF+ 
Sbjct: 901  TGIVDQVMVSINQEGY--KFCKIKIRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTA 958

Query: 878  VTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDE 937
              G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF ++V           
Sbjct: 959  -EGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDTVN---------- 1007

Query: 938  SKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRS 997
                V ++  +L   G++  G EVLY+G  G +L  +IFIGP YYQRL+HMV DK   R+
Sbjct: 1008 ----VQKISNLLHEYGYHLRGNEVLYNGFTGRKLGTQIFIGPTYYQRLKHMVDDKIHSRA 1063

Query: 998  TGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCG 1057
             G +  + RQP++GR R GG+RFGEMERD  ++HGAA  L +RL   SD +   VC+LCG
Sbjct: 1064 RGPLQILNRQPMEGRSRDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHVCNLCG 1123

Query: 1058 SVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAM 1117
             +  A   +                      C  C+    +  + +PY  + L  EL +M
Sbjct: 1124 LIAIANLRN------------------NTFECRGCKNKTQISQIRLPYACKLLFQELMSM 1165

Query: 1118 NI 1119
            +I
Sbjct: 1166 SI 1167


>gi|330833900|ref|YP_004408628.1| DNA-directed RNA polymerase subunit B [Metallosphaera cuprina Ar-4]
 gi|329566039|gb|AEB94144.1| DNA-directed RNA polymerase subunit B [Metallosphaera cuprina Ar-4]
          Length = 1124

 Score =  371 bits (952), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 334/1201 (27%), Positives = 523/1201 (43%), Gaps = 190/1201 (15%)

Query: 13   RELVRHHIESFDYMLDEGLSEMFDHCRQAKISYT--------GKL-----------MADV 53
            R LVR H++SF+  +   L E+ D   QA+I+          GK+             D 
Sbjct: 18   RGLVRQHLDSFNDFIKNKLQEIIDE--QAEITTEIPGLKIRLGKIRVGKPRVREADKGDK 75

Query: 54   EFQYLDA-------GSPVVRE-------------RFNFGQFPVMLKTRRCHLQGADSQKL 93
            E   ++A        +PV  E                 G  P+MLK+         S+KL
Sbjct: 76   EITPMEARLRNLTYAAPVYLEMTPIENNIEGDLTEVYIGDIPIMLKSIADPTSEFTSEKL 135

Query: 94   VSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVR 153
            V + E+  + GGYFI+NG ERV    I+ +++   + V +         T  A +I    
Sbjct: 136  VEIGEDPKDPGGYFIVNGSERV----IVTQEDLATNRVLTDVGKTGSNITHTAKIISSTS 191

Query: 154  KDQSSVTLKLYYLLNGSVRLGF-WLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEK 212
              +  +T++   L + ++ + F  + GK   +P  I+++AL    D EI   L    D  
Sbjct: 192  GYRVPITIE--KLKDSTIHVSFPAVPGK---IPFAILMRALGIETDEEI--TLAVSLDPD 244

Query: 213  YKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAE 272
             + E              ++ +  Q  S+ ++   L  IG     +  G + E     AE
Sbjct: 245  IQNE--------------LLPSIEQASSIISKDDALDFIGNR---IAIGQKREMRIQKAE 287

Query: 273  TVIRDYIFVHL----NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
             V+  Y   H+    +D   K   L F + KL  L       D+ D   N+ + L G L 
Sbjct: 288  QVLDKYFLPHIGTNASDRTAKAYYLAFAVSKLIELYLGRREPDDKDHYANKRLKLAGDLF 347

Query: 329  TIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKT 388
                +          K  ++D +         F L    KV  +  +       + + + 
Sbjct: 348  ASLFRVAF-------KAFVKDLV---------FQLEK-SKVRGRRLAVNALVRQDIISER 390

Query: 389  GRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFA-GLRTTSVRKLLPESWG 447
             R A  TG  +  R G +   +R N+L  +S  R V   +S A G      R L    WG
Sbjct: 391  IRHALATGNWVGGRTGVSQLLDRTNWLSMLSHLRRVV--SSLARGQPNFEARDLHGTQWG 448

Query: 448  FLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPK 507
             +CP  TP+G   GL+ ++    +++   + +           S+ R+L  +G+IP    
Sbjct: 449  RMCPFETPEGPNSGLVKNLALLGQISVGVNEK-----------SVERLLYNLGVIPIEEV 497

Query: 508  LVKSGPPAVLS--------VLLDGRVVGVIPS-SEIEKVVAHLRRLKVSAASVIPDDLEV 558
            + K       S        V+L+GR++G  P+ SE+ + +   RR        + D++ V
Sbjct: 498  IKKYRSQEEKSEDYENWSKVILNGRLIGYYPNGSELAEKIREKRR-----EGELSDEVNV 552

Query: 559  GYVPLSLGGAYPGLYLFTSPPKFVRPVRNI--SLPSEESQNIELIGP----FEQVFMEIR 612
             Y        Y  +Y+ +   +  RP+  +    P    ++IE +      F+ +  E +
Sbjct: 553  NYTRTE---TYNEVYINSDSGRVRRPLIVVRHGKPLVTKEDIENLKKGKITFDTLIREGK 609

Query: 613  CPDGGDGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQM 662
                      NA+ A          TH EI    +L + A++ PY +HNQSPRN YQ  M
Sbjct: 610  IEFLDAEEEENAYIALEPKDVTKDHTHLEIWTPAILGITASIIPYPEHNQSPRNTYQSAM 669

Query: 663  AKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGY 722
            AKQ +G      + R D + + L  PQ PIV+T      G  E P G NAI A+++YTGY
Sbjct: 670  AKQALGLYAANYQIRTDTRAHLLHYPQKPIVQTRALEAIGYTERPAGNNAIFALMSYTGY 729

Query: 723  DMEDAMILNKSSVDRGMCHGQIY-------------QTETIDLSDDGNKVDRGQKLFRRN 769
            +MEDA+I+NKSS++RGM     +             Q + I L + G +  +G+  +R  
Sbjct: 730  NMEDAVIMNKSSIERGMFRSTFFRLYSAEEIKYPGGQEDEILLPEPGVRGYKGKDYYRLL 789

Query: 770  KDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR---KGSESVFVDYVAV 826
            +    +   +D  G   +   + P        + + +  + ++    +  E   VD V V
Sbjct: 790  ESNGIVSPEVDVKGGDVLIGKVSPPRFLQEFKELSPDQAKRDTSIITRHGERGTVDLVLV 849

Query: 827  DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLI 886
               +  N  +   +R R  R P IGDKF++RHGQKGV   + P +DMP++  +G+ PD+I
Sbjct: 850  TETSEGN--KLVKVRVRDLRIPEIGDKFATRHGQKGVVGMIIPQVDMPYT-TSGLTPDII 906

Query: 887  INPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELG 946
            +NPHA PSRMT+  ++E+++ K  +  G+ +DATPF N                 ++E+ 
Sbjct: 907  LNPHALPSRMTVGQIMEALSGKFVAATGESIDATPFYNIP---------------IEEIQ 951

Query: 947  EMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITR 1006
            + L   G+   G EV+Y G  G +L   I  G VYYQ+L HMV+DK   R  G +  +TR
Sbjct: 952  KKLLNSGYLGDGSEVVYDGRTGEKLKGRILFGIVYYQKLHHMVADKMHGRGRGPVQILTR 1011

Query: 1007 QPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIH 1066
            QP +GR R GG+RFGEMERD L+ +GAA L+ DRL   SD     VC  CG V       
Sbjct: 1012 QPTEGRAREGGLRFGEMERDCLIGYGAAMLIKDRLLDNSDKATVYVCEQCGYVGWYD--- 1068

Query: 1067 PQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLG 1126
                           R+  K  C        +  VA+ Y F+ L  EL +M I   L LG
Sbjct: 1069 ---------------RSKNKYICPIHGDKSTLYPVAVSYAFKLLLQELMSMVIAPKLVLG 1113

Query: 1127 D 1127
            +
Sbjct: 1114 E 1114


>gi|268574492|ref|XP_002642223.1| C. briggsae CBR-RPB-2 protein [Caenorhabditis briggsae]
          Length = 1194

 Score =  371 bits (952), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 319/1144 (27%), Positives = 504/1144 (44%), Gaps = 145/1144 (12%)

Query: 34   MFDHCRQAKISYTGKLMADVE--FQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQ 91
            M +  R   ++Y   L  D+       ++ +  V E+   G+ PVML++  C L     +
Sbjct: 117  MPNEARLRNLTYASPLYVDITKVVTRDESVNEKVYEKVFVGKVPVMLRSSYCMLSNMTDR 176

Query: 92   KLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC 151
             L  L E   + GGYF++NG E+V   +I  ++    ++   S +D +  Y  K     C
Sbjct: 177  DLTELNECPLDPGGYFVINGSEKV---LIAQEKMATNTVYVFSMKDGK--YAFKTECRSC 231

Query: 152  VRKD-QSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLEI 201
            +    + + T+ +  L  G         G+  +         +P+ IV +AL   +D +I
Sbjct: 232  LENSSRPTSTMWVNMLARGGGGGKKTAMGQRIIGILPYIKQEIPIMIVFRALGFVSDRDI 291

Query: 202  FNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDG 261
              H+   +++           P + E VK  L E     +  +   L  IG   +    G
Sbjct: 292  LGHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RGAKPG 336

Query: 262  LQSESYYAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQ 317
            +  E     A  +++  +  H+    +    K   + +M+ +L          D+ D + 
Sbjct: 337  VTREQRIKYAREILQKELLPHVGVSEHCETKKAFFIGYMVHRLLLAALGRRELDDRDHIG 396

Query: 318  NQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQ 377
            N+ + L G L+    +    + L++ +   Q  I  N    D F L    K      +  
Sbjct: 397  NKRLDLAGPLLAFLFRALFRNLLKEMRMTAQKYINKN----DDFALDVCVK------TST 446

Query: 378  IGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS 437
            I   +   L TG    Q     Q RAG +    RL +   +S  R  +      G +   
Sbjct: 447  ITRGLAYSLATGNWGDQKKAH-QSRAGVSQVLNRLTYTATLSHLRRANSPIGREG-KLAK 504

Query: 438  VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLI 497
             R+L    WG +CP  TP+G+  GL+ ++         Y S G++ +       IL  L 
Sbjct: 505  PRQLHNTQWGMVCPAETPEGQAVGLVKNLALMA-----YISVGSLPE------PILEFLE 553

Query: 498  GVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAASV 551
               M  +L ++  S       + ++G  VG+    E E ++  L++L+      VS  S+
Sbjct: 554  EWSM-ENLEEVSPSAIADATKIFVNGAWVGI--HREPELLMDTLKKLRRQMDIIVSEVSM 610

Query: 552  IPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN-------------I 598
            + D  +      +  G      L     K     R+I L  +  +              +
Sbjct: 611  VRDIRDREIRIYTDAGRVCRPLLIVEKQKLALRKRHIDLLKDVDETKKYTWSDLVGNGVV 670

Query: 599  ELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656
            ELI   E+    + +   D   GG  + +  TH EIHP  +L V A++ P+ DHNQSPRN
Sbjct: 671  ELIDSMEEETSMIAMMPEDLRSGGYCDTY--THCEIHPAMILGVCASIIPFPDHNQSPRN 728

Query: 657  MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
             YQ  M KQ MG        R D   + L  PQ P+V T +      +E P G NAIVA+
Sbjct: 729  TYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFNELPAGINAIVAI 788

Query: 717  LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAK--- 773
            L+Y+GY+ ED++I+N S++DRG+     Y++      ++ N  +  ++L  +    K   
Sbjct: 789  LSYSGYNQEDSVIMNNSAIDRGLFRSVFYRSYR---DNEANIDNANEELIEKPTREKCSG 845

Query: 774  ---SLHSVIDSDGLPYVGQMIHPGEPYC-------SIYDKTTNSWRTNSRK-------GS 816
               SL+  +D DG+   G  +   +           I D    + +   ++        S
Sbjct: 846  MRHSLYDKLDEDGIISPGMRVSGDDVIIGKTVALPDIDDDLDATGKKYPKRDASTFLRSS 905

Query: 817  ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS 876
            E+  VD V + + N  N  +   IR R  R P IGDKF+SRHGQKG    ++   DMPF+
Sbjct: 906  ETGIVDQVMLSLNNDGN--KFVKIRMRSVRLPQIGDKFASRHGQKGTMGIMYRQEDMPFT 963

Query: 877  GVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTD 936
               G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF ++V          
Sbjct: 964  A-EGLTPDIIINPHAVPSRMTIGHLIECLQGKLSANKGEIGDATPFNDTVN--------- 1013

Query: 937  ESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVR 996
                 V ++  +L   G++  G EV+Y+G  G +LT +IF GP YYQRL+HMV DK   R
Sbjct: 1014 -----VQKISGLLCEYGYHLRGNEVMYNGHTGKKLTTQIFFGPTYYQRLKHMVDDKIHSR 1068

Query: 997  STGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSD-YHVADVCSL 1055
            + G +  + RQP++GR R GG+RFGEMERD  ++HGA   L +RL   SD YHV  VC+ 
Sbjct: 1069 ARGPIQMMNRQPMEGRARDGGLRFGEMERDCQISHGATQFLRERLFEVSDPYHVY-VCNN 1127

Query: 1056 CGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELA 1115
            CG ++ A                          C AC+    +  V +PY  + L  EL 
Sbjct: 1128 CGLIVVANL------------------RTNSFECKACRNKTQVSAVRIPYACKLLFQELM 1169

Query: 1116 AMNI 1119
            +M+I
Sbjct: 1170 SMSI 1173


>gi|300709367|ref|XP_002996849.1| hypothetical protein NCER_100041 [Nosema ceranae BRL01]
 gi|239606175|gb|EEQ83178.1| hypothetical protein NCER_100041 [Nosema ceranae BRL01]
          Length = 1091

 Score =  370 bits (950), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 318/1190 (26%), Positives = 530/1190 (44%), Gaps = 210/1190 (17%)

Query: 15   LVRHHIESFDYMLDEGLSEM----------FDH--------------------------- 37
            L R HIESF+Y ++  ++ +           DH                           
Sbjct: 19   LARQHIESFNYFINHEIASIVKANDIVDSDIDHTFYLKYTDVRISVPSLEENMIKHTLYP 78

Query: 38   --CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNF-GQFPVMLKTRRCHLQGADSQKLV 94
              CR   ++Y   L  D+E+        ++R++  F G+ P+ML++ +C L+  ++++ +
Sbjct: 79   MECRLRDLTYASNLYIDIEYV---RNKQIIRKKDVFIGRIPIMLQSDKCLLKSKNNEQKL 135

Query: 95   SLKEEAA----------EMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTD 144
            S +   A          ++GGYFI+ G+E+V   +++ +Q   +S  R    D  +G+  
Sbjct: 136  SEESLNANLFFSQECPYDIGGYFIIKGIEKV---ILIQEQ---LSKNRIIIEDGPKGFFS 189

Query: 145  KAVVIRCVRKDQSSVTLK--LYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIF 202
                    +K ++SV  K   YYL+N S             +PV  ++KA    +D EI 
Sbjct: 190  SMTSSTHEQKSKTSVIYKNDCYYLVNSSFSED---------IPVVAIIKACNMISDKEIV 240

Query: 203  NHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGE--HFQPVID 260
                 C  +++            ++++ +   E+    + T  +   ++      +P  +
Sbjct: 241  E----CIGKEF------------ADQIVLSFEEIYKHKIHTSKEAALYLAGFIKMKPDAN 284

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQE 320
             L+ E    + E ++ +  F  + D  +K  ++  M+++L     +    ++ D + N+ 
Sbjct: 285  KLE-EVRNVIVEKILPNVKFDGV-DLRNKGIMICLMVRRLIFTQKNIITEEDKDFIGNKR 342

Query: 321  ILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENN--GKKFD---FFNLANIKKVMEKNPS 375
              L G L++I  ++  + +  + K+ I   +      ++FD   FFNL           +
Sbjct: 343  FELAGQLLSILFEDSFKKFNWELKRSIDKILTKRLRAQEFDALTFFNLQ----------T 392

Query: 376  KQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
              I TS++  + +G    +       R+G T    R +++  +     V+  + F   R 
Sbjct: 393  NIITTSMQRAISSGNWNLRRFR--MDRSGVTHVLIRHSYISAVGMMTKVN--SHFEKTRK 448

Query: 436  TS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILR 494
             S  R L   SWG  CP  TP+GE CGL+ +++    V +  D             +I+ 
Sbjct: 449  VSGPRALHTSSWGMFCPADTPEGESCGLVKNLSLLAEVTTDSD-----------LDTIIY 497

Query: 495  VLIGVGMIPS-LPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIP 553
            +L  +G+I + +    +     +  V L+G + GV  +     +V + R  +     VI 
Sbjct: 498  ILSSLGVIQTGVLYTHEMVSDEMYLVFLNGDIFGV--TQNCFGLVKNFRNYR--RKGVIN 553

Query: 554  DDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIE----LIGPFEQVFM 609
                  YV + +      + +     +  RP+  I +  E  QN++    +I   E  + 
Sbjct: 554  K-----YVSIYIDENLKSVNIAADNGRLCRPL--IIITDEVRQNLKKGLFVISDLEMKYK 606

Query: 610  EIRCPDGGDGGRRNAFPA-------------------THEEIHPTGMLSVVANLTPYSDH 650
                 D  + GR     A                   TH EI    +L  VA L P+ +H
Sbjct: 607  SF--DDLVEDGRIEYLDANEENDALIALKIEDISDKTTHLEIADFAILGYVAGLIPFPNH 664

Query: 651  NQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGT 710
            NQSPRN YQC M KQ +G+     K R D     L   Q P+  T        +E P G 
Sbjct: 665  NQSPRNTYQCAMGKQAIGYIALNSKKRFDGISLQLCNTQKPLTTTQILNITDYNEIPAGQ 724

Query: 711  NAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNK 770
            NA+VAV++Y+GYD+EDA+I+NK S+DRG    ++Y+T    L    +  +R   +    K
Sbjct: 725  NAMVAVMSYSGYDIEDALIINKDSLDRGFARTEVYKTHCYVLKKYSD--NRSDVILPDIK 782

Query: 771  DAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWR-TNSRKGSESVFVDYVAVDMK 829
            +      ++D DG+   G+++  G  Y +      N ++ T         F+D V +   
Sbjct: 783  NP-----ILDKDGIGKPGELLLEGTVYINKNSPCENGYKFTGGVHKGNPAFIDRVLITKS 837

Query: 830  NSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINP 889
              + L +   I  R TR P IGDKFSSRHGQKGV   + P I+MPF+  +G+ PD+I+NP
Sbjct: 838  EDQTLIK---ICLRQTRVPEIGDKFSSRHGQKGVVGLIVPQINMPFTD-SGLVPDIIMNP 893

Query: 890  HAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEML 949
            H FPSRMT+  ++E +  K G + GK  DAT F                K+ VD + ++L
Sbjct: 894  HGFPSRMTVGKIIELLTGKAGIIEGKISDATIF---------------KKNEVDLVCDIL 938

Query: 950  RTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPI 1009
               GFN+ G +  YSG+ G  +   IF GPV+YQRL+HMV+DK  +R+ G    +TRQP 
Sbjct: 939  SNNGFNFGGKDCFYSGISGEPIYAYIFYGPVFYQRLKHMVADKIHMRARGPRAILTRQPT 998

Query: 1010 KGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQK 1069
            +GR R GG+R GEMERD L+ +GA+ L+ +RL   SD      C  CG ++         
Sbjct: 999  EGRSRDGGLRLGEMERDCLIGYGASSLIVERLMESSDLFETFCCKNCGILV--------- 1049

Query: 1070 RAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
                          PK   C+ C  +  +  + +PY  + L  EL +MNI
Sbjct: 1050 --------------PKN-GCNVCNDTNPL-PIRLPYACKLLFQELMSMNI 1083


>gi|429329468|gb|AFZ81227.1| DNA-directed RNA polymerase II subunit, putative [Babesia equi]
          Length = 1219

 Score =  370 bits (950), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 326/1156 (28%), Positives = 516/1156 (44%), Gaps = 173/1156 (14%)

Query: 39   RQAKISYTGKLMADVEFQ-YLD---AGSPVVRE-----RFNFGQFPVMLKTRRCHLQGAD 89
            R   ++Y  ++  D+E + YL     G+  +++     R   G+ P+MLK+  C  +G  
Sbjct: 165  RLRNLTYASQIYVDIEQETYLKDETTGAETLQDKTTYPRIPLGRMPMMLKSTYCWTKGLS 224

Query: 90   SQKLVSLKEEAAEMGGYFILNGLERV----------FRSVILPKQNYPMSMVRSSFRDRR 139
             + L  + E   + GGYFI+NG ERV          F  V   KQ    S V +  R + 
Sbjct: 225  EEDLADVGECPYDQGGYFIVNGGERVLIAQERMANNFIYVFKKKQPSKYSFV-AEIRSQA 283

Query: 140  E---GYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDT 196
            E   G T  +++++       S   K +  L  ++    +L+     +PV I+ +AL   
Sbjct: 284  EFSQGITPFSIMMKSSLGAPGS-RFKSHGQLVATIP---YLRAD---IPVPILFRALGCV 336

Query: 197  NDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLS-LTTRLQCLQHIGEHF 255
             D +I   +   +++K              + + ++ A +++ S   T+  CL  IG+  
Sbjct: 337  ADRDILQRIVYDFEDK--------------QMLNLMRATLEEASDYVTQETCLDFIGKRG 382

Query: 256  QPVIDGLQSESYYAVAETVIRDYIFVHLN----DNNDKFNLLIFMLQKLFSLVDHTSVSD 311
              V   L++   YA  + ++R ++  H+         K   L +M+ +L          D
Sbjct: 383  PTVGAPLETRIQYA--KDLLRQHLLPHVGTEPGSEGKKCYFLGYMIHRLLLSRLGRINED 440

Query: 312  NPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVME 371
            + +    + + L G L+            +  ++++Q +I + G+ FD          + 
Sbjct: 441  DREHFGKKRLDLAGPLMASSFGTLFRKMAKDARRILQQQI-DCGRAFDVAGAIRSATTIT 499

Query: 372  KNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFA 431
            +    Q+ T      + G++          R G +    RL F  ++S  R ++      
Sbjct: 500  QGLQYQLLTGNWGRDREGKIV---------RTGVSQVLNRLTFASYLSHLRRLNTPLGRE 550

Query: 432  GLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS 491
            G +    R+L    WG +CP  TP+G+  GL+ ++   C     Y S G++        +
Sbjct: 551  G-KMAKPRQLHNTHWGMICPAETPEGQAVGLVKNLALMC-----YISVGSVA------AT 598

Query: 492  ILRVLIGVGMIPSLPKLVKSGPPAVLS----VLLDGRVVGVIPSSE--IEKVVAHLRRLK 545
            I   L   GM  SL ++    PP V+     + ++G  VG    ++  +  ++   RR  
Sbjct: 599  INEFLSEWGM-DSLDEV----PPEVVKDRVKIFINGTWVGCFDEADSLVRTLLELRRRGD 653

Query: 546  VSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP---VRNISLPSEESQNIELI- 601
            +S+ + I  D+    V +           FT   + +RP   V N +  +   ++I +I 
Sbjct: 654  ISSETSIVRDIVSQEVKI-----------FTDAGRAMRPLFIVENGNTLAINKEHIAMID 702

Query: 602  -------GPFEQVFME-IRCPDG---------GDGGRRNAFPAT--HEEIHPTGMLSVVA 642
                   G  E   +E I C +           D    N + +T  H EIHP+ +L V A
Sbjct: 703  NNECNWDGLVESGVIEYIDCEEEEMCMIGMFVDDLKANNTYCSTYTHCEIHPSMILGVCA 762

Query: 643  NLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYG 702
            ++ P+ D NQSPRN YQ  M KQ MG        R D   + L  PQ P+V T +     
Sbjct: 763  SIIPFPDQNQSPRNTYQSAMGKQAMGVYATNFNLRMDTLCHILYYPQKPLVCTRSMEFLR 822

Query: 703  IDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRG 762
              E P G NAIVA++ YTGY+ ED++I+N+SS+DRG+      +T   +    G+ +   
Sbjct: 823  FRELPAGINAIVAIMCYTGYNQEDSLIMNQSSIDRGLFRSAFNRTYISEEKYVGSTI--- 879

Query: 763  QKLFRRNKDAKSL------HSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR--- 813
             + F R   A  L      ++ +D+DGL   G  +   +    I  +T+ +   + R   
Sbjct: 880  VERFERPGTANILGLKRGDYTKLDADGLVEPGSRVMGDD---IIIGRTSTADEEDMRQDC 936

Query: 814  ----KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWP 869
                + +E+  VD V V + N+K   + A ++ R  R P IGDKF+SRHGQKG     + 
Sbjct: 937  SCCLRANENGVVDTVLVSV-NAKGT-KFAKVKVRSVRVPQIGDKFASRHGQKGTIGITYR 994

Query: 870  DIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKT 929
              D+PF+   G+ PD+I+NPHA PSRMTI  L+E +  K G+  G   DATPF       
Sbjct: 995  TEDLPFT-CEGIVPDIIMNPHAVPSRMTIGHLVECLIGKVGACCGMEGDATPF------- 1046

Query: 930  NGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMV 989
                    SK  V ++ E L  CG+  HG E  + G  G  +T  IF+GP YYQRL+HMV
Sbjct: 1047 --------SKLTVQQIAERLFDCGYARHGNEAFHCGFTGQMITSRIFVGPTYYQRLKHMV 1098

Query: 990  SDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHV 1049
             DK   RS G    +TRQP +GR R GG+RFGEMERD +++HGAA +L +RL   SD + 
Sbjct: 1099 EDKIHARSRGPSTMLTRQPTEGRSREGGLRFGEMERDCMISHGAAKMLKERLFDQSDAYR 1158

Query: 1050 ADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRY 1109
              VC  CG    A                          C AC     +  VA+PY  + 
Sbjct: 1159 IHVCDNCGLCCIADL------------------NKSSFECTACDNKTNISQVAIPYACKL 1200

Query: 1110 LAAELAAMNIKITLQL 1125
            L  EL +M I   L L
Sbjct: 1201 LIQELMSMAIYPKLVL 1216


>gi|384253175|gb|EIE26650.1| DNA-directed RNA polymerase III, subunit 2 [Coccomyxa subellipsoidea
            C-169]
          Length = 1170

 Score =  370 bits (950), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 340/1226 (27%), Positives = 523/1226 (42%), Gaps = 210/1226 (17%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMF--------------------------------- 35
            F  +R LV+ HI+SF+Y +++ + ++                                  
Sbjct: 49   FLKVRGLVKQHIDSFNYFINQEIKKIVHAKGNEKVTCDTDPNFFFKYTDIFVGRPQVEED 108

Query: 36   --------DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN------FGQFPVMLKTR 81
                      CR   ++Y   +  DVE  Y      VVR+  N       G+ P+ML++ 
Sbjct: 109  YITTGITPQACRLRDMTYAAPISVDVE--YTRGKEIVVRKGKNGVGAVVIGRMPLMLRSD 166

Query: 82   RCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREG 141
            RC L+G    +L  L E   + GGYF++ G E+V    IL ++    + +     D +  
Sbjct: 167  RCVLKGKSEAQLAELGECPLDPGGYFVVKGAEKV----ILIQEQLSKNRIIIDL-DSKGQ 221

Query: 142  YTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLG-FWLQGKEYLLPVGIV--LKALVDTND 198
             T         RK ++++ L          R G   L+   +   V +V  L+A+   +D
Sbjct: 222  VTASVTSSTHERKSKTNIVLG---------RKGQLCLRHNAFTEDVNMVAVLRAMGVESD 272

Query: 199  LEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQP- 257
             EI   + C               P ++  +   L E + + L  R Q L+++G   +  
Sbjct: 273  QEILALVGC--------------EPGLAALLAPTLQEAKAMGLFIRQQALEYLGSRVKAG 318

Query: 258  --VIDGLQSESYYAVAETVIRDYIFVHLN----DNNDKFNLLIFMLQKLFSLVDHTSVSD 311
                   +S S    A  ++ + +  H+     D   K   +  M++++ + +  +++ D
Sbjct: 319  KQQYSSRRSRSKVDEARDILANVVVCHIPVPQYDFQQKVIYMAVMMRRMIAAMLDSTLID 378

Query: 312  NPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVME 371
            + D   N+ + L G L+ +  ++  +    + K+   + +    +   F    N+   M 
Sbjct: 379  DRDYYGNKRLELAGGLLALLFEDLFKRMNNELKRTADNTLSKANRASQFDAAKNLHVEM- 437

Query: 372  KNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFA 431
                  I   +E+ + +G    +      +R G T    RL+F+  +     +   + F 
Sbjct: 438  ------ISQGMESAISSGNWTIRRFR--MERKGVTQVLSRLSFIAALGMMTRIT--SQFE 487

Query: 432  GLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRT 490
              R  S  R L P  WG LCP  TP+GE CGL+ ++     V +         D  +   
Sbjct: 488  KTRKVSGPRALQPSQWGMLCPADTPEGESCGLVKNLALMTHVTT---------DEEEAPL 538

Query: 491  SILRVLIGVGMIPSLPKLVKSG----PPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKV 546
            + L  L+G     + P  + SG       V  V L+G ++G+      +++V   RRL+ 
Sbjct: 539  ARLAHLLG-----TQPATLVSGFEYSSRGVAMVFLNGSILGI--HRRPKRLVKEFRRLRR 591

Query: 547  SAASVIPDDLEVG-YVPLSLGGAYPGLYLFTSPPKFVRP--VRNISLPSEESQNIELIGP 603
            +          VG +V + L      +Y+ +   +  RP  + +  +P   S +   +  
Sbjct: 592  AG--------RVGEFVSIFL--QQDSVYIASDGGRVCRPLIICDRGVPRVTSAHTAKLKS 641

Query: 604  FEQVFME------IRCPDGGDGG--------RRNAFPATHEEIHPTGMLSVVANLTPYSD 649
             E  F +      +   D  +          R      TH EI P  +L VVA L PY  
Sbjct: 642  GEWGFSDFLRNGLVEYLDVNEENNALIALYERNCGVATTHLEIEPFTVLGVVAGLIPYPH 701

Query: 650  HNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTG 709
            HNQSPRN YQC M KQ MG          D  LY L  PQ P++ T T    G D+   G
Sbjct: 702  HNQSPRNTYQCAMGKQAMGNIAYNQLNVMDTLLYLLVYPQRPLLTTKTIELVGFDKLGAG 761

Query: 710  TNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDR---GQKLF 766
             NA VAV++Y+GYD+EDA+I+N++S+DRG     + +     L    N+         L 
Sbjct: 762  QNATVAVMSYSGYDIEDAIIMNRASLDRGFGRCIVLRKYGTVLKKHQNRSQDTVVAAPLP 821

Query: 767  RRNKDAKSLHSVIDSDGLPYVGQMIHPGE---------------PYC------SIYDKTT 805
                     H ++D DGL   G++  PGE               P+       S Y    
Sbjct: 822  PGQSKPTGRHKLLDEDGLAAPGEIASPGEILINKQVPMSTKDPLPHGMVSLPPSAYKPAP 881

Query: 806  NSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCS 865
             SW+       ES  VD V   + N+ +         RHTR P +GDKFSSRHGQKGV  
Sbjct: 882  VSWKGPP---GESCIVDKVL--LTNNDDGHTVIKTLMRHTRRPEVGDKFSSRHGQKGVVG 936

Query: 866  QLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANS 925
             +    DMPFS   G+ PDLI+NPH FPSRMT+  +LE + +K     G+F   T F  S
Sbjct: 937  SIVAQEDMPFSE-RGICPDLIMNPHGFPSRMTVGKMLELIGSKAAVQSGRFHYGTAFGES 995

Query: 926  VKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRL 985
                   TG  ++   VD + + L   GF+Y G + L SG  G  L   IF+GPVYYQ+L
Sbjct: 996  -------TGLADN---VDSISKTLVEHGFSYSGKDQLTSGSSGEPLEALIFMGPVYYQKL 1045

Query: 986  RHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCS 1045
            +HMV DK   R+ G    +TRQP +GR R GG+R GEMERD L+ +GA+ LL +RL   S
Sbjct: 1046 KHMVLDKMHARARGPRVVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISS 1105

Query: 1046 DYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKG---METVA 1102
            D     VC+ CG  L   F                      V C  C ++K    M T+ 
Sbjct: 1106 DQFQVHVCNHCG--LLGYF-------------------DANVGCAVCPSTKSSDDMSTLK 1144

Query: 1103 MPYVFRYLAAELAAMNIKITLQLGDG 1128
            +PY  + L  EL +MNI   L+L + 
Sbjct: 1145 LPYACKLLFQELQSMNIVPRLKLAEA 1170


>gi|303273466|ref|XP_003056094.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226462178|gb|EEH59470.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 1172

 Score =  370 bits (950), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 320/1169 (27%), Positives = 506/1169 (43%), Gaps = 200/1169 (17%)

Query: 39   RQAKISYTGKLMADVEFQY----LDAGSPVVRERFN---FGQFPVMLKTRRCHLQGADSQ 91
            R   ++Y+  L  D+E       LD+      E+ N    G+ P+ML++  C L     +
Sbjct: 110  RLRNLTYSAPLYVDMEKTVTTVTLDSQKTEEVEKINKVFIGKVPIMLRSEYCSLHDHTDK 169

Query: 92   KLVSLKEEAAEMGGYFILNGLERVFRS---------VILPKQNYPMSMVRSSFRDRREGY 142
            +L  L E   + GGYFI+NG E+V  +          +  K+     M  +  R   E  
Sbjct: 170  ELTELGECPYDEGGYFIINGSEKVLIAQEKMSSNHVYVFKKRQPSKYMWVAECRSSPESG 229

Query: 143  TDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIF 202
               A    CV +   S   K+     G +R+       +  +P+ +V +AL    D +I 
Sbjct: 230  ARAASA--CVARMLHSPGTKME---PGCIRVTLPYIRTD--IPLFVVFRALGFVADKDIL 282

Query: 203  NHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGL 262
             H+   +++    E   +  P + E + I   +V           L +IG+    V  G+
Sbjct: 283  EHIVYDFNDHDAME---LLRPSIEEALPIQSKKV----------ALDYIGKRGSAV--GV 327

Query: 263  QSESYYAVAETVIRDYIFVHLNDNND----KFNLLIFMLQKLFSLVDHTSVSDNPDSLQN 318
              E     A+ +++  +  H+  + +    K   L +++ +L          D+ D   N
Sbjct: 328  SREKRIKYAQDILQKELLPHVGVDEECETRKAYYLGYIVHRLLLCALGRRNEDDRDHFGN 387

Query: 319  QEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQI 378
            + + L G LI I  ++     L K  +L      ++GK+     LA +K       +K I
Sbjct: 388  KRMDLAGPLIAILFRQLFRK-LTKDVRLYCQRCVDSGKEIQL-TLA-VK-------AKTI 437

Query: 379  GTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSV 438
             + ++  L TG    Q   D+  RAG +    RL+F   +S  R ++      G +    
Sbjct: 438  TSGLKYSLATGNWGAQGAQDI--RAGVSQVLNRLSFSSTLSHLRRLNSPIGREG-KLAKP 494

Query: 439  RKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIG 498
            R+L    WG +CP  TP+G+ CGL+ +++                         L  L+ 
Sbjct: 495  RQLHNSHWGMVCPAETPEGQACGLVKNLS-------------------------LMALVS 529

Query: 499  VGMIPSLPKL----------VKSGPPAVLS----VLLDGRVVGV--IPSSEIEKVVAHLR 542
            VG  PS P L          ++   P+V+S    + ++G  VGV   P+  +  +    R
Sbjct: 530  VGS-PSSPVLEFLEEWTMENLEEISPSVISHATKIFVNGVWVGVHRDPADLVRTLRELRR 588

Query: 543  RLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------------RNISL 590
            ++ ++    I  D+ +             L L+T   + +RP+            RNI +
Sbjct: 589  KVDITTEVGIVHDIRL-----------QELRLYTDYGRCIRPLFIVEDQRMKIKKRNIEM 637

Query: 591  PSE----------------------ESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPAT 628
              E                      E +   +I    +  ++ R     +   ++ +  T
Sbjct: 638  LQEKDITGFTWNDLVSSGCIEYVDTEEEETTMISMTIEDLVQARLLANNETSVQHMY--T 695

Query: 629  HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTP 688
            H EIHP+ +L +  ++ P+ DHNQSPRN YQ  M KQ MG  V   + R D   Y L  P
Sbjct: 696  HCEIHPSMILGICGSIIPFPDHNQSPRNTYQSAMGKQAMGMYVTNFQLRMDTLAYVLFYP 755

Query: 689  QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
            Q P+V T         E P G N +V ++ YTGY+ ED++I+N+SS+DRG+     Y++ 
Sbjct: 756  QKPLVTTRAMEHLHFRELPAGVNVVVGIMCYTGYNQEDSVIMNQSSIDRGLFRSIFYRSF 815

Query: 749  TIDLSDDGNKVDRGQKLFRRNKDAKSLHSV---IDSDGLPYVGQMIH------------P 793
              +    G+      +           H     +D DGL   G  +             P
Sbjct: 816  KDEEKKQGSLTKEDLECPSPETTLGMRHGTYGKLDKDGLICPGTRVSGEDIIIGKTSPLP 875

Query: 794  GEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDK 853
             +   +  ++ T    +   K SE+  +D V +   N + L +   IR R  R P +GDK
Sbjct: 876  DDDPSAASNRFTKRDCSTGMKNSETGIIDQVLL-TTNDQGL-RFVKIRVRSCRTPQVGDK 933

Query: 854  FSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLH 913
            FSSRHGQKG     +   DMPF+   G+ PD+I+NPHA PSRMTI  L+E +  K  ++ 
Sbjct: 934  FSSRHGQKGTIGMTYTQEDMPFT-CEGVVPDIIVNPHAIPSRMTIGQLVECLMGKVAAMM 992

Query: 914  GKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTC 973
            GK  DATPF               +   V+ + +ML  CG+   G EV+Y+G  G +L  
Sbjct: 993  GKEGDATPF---------------TPVTVENISDMLHQCGYQKRGNEVMYNGHTGRKLEA 1037

Query: 974  EIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGA 1033
            +IF+GP YYQRL+HMV DK   R  G +  +TRQP++GR R GG+RFGEMERD +++HGA
Sbjct: 1038 KIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPMEGRSRDGGLRFGEMERDCIISHGA 1097

Query: 1034 AYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQ 1093
            A  L +RL   SD +   VC  CG +  A                      K  T   C+
Sbjct: 1098 AAFLKERLMDQSDAYRVHVCQTCGLIAVANL--------------------KNQTFECCK 1137

Query: 1094 T-SKGMETVA--MPYVFRYLAAELAAMNI 1119
              S+ M+ V   +PY  + L  EL +M +
Sbjct: 1138 NPSERMKVVQVLLPYACKLLFQELMSMAV 1166


>gi|253746328|gb|EET01680.1| DNA-directed RNA polymerase subunit B [Giardia intestinalis ATCC
           50581]
          Length = 1235

 Score =  370 bits (950), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 265/869 (30%), Positives = 414/869 (47%), Gaps = 87/869 (10%)

Query: 14  ELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERF---- 69
           E V  H+ SF+  +D   + +  H     I+        VE   L   +P     F    
Sbjct: 52  EAVSSHVNSFNDFIDSLNTTILKHAPSITINLNTSKAIKVELANLSLNAPPFTPAFARET 111

Query: 70  -------------------------NFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMG 104
                                    N G  P+M+ ++ C L G   ++ + L+E+  + G
Sbjct: 112 HANYCGTLNVTIKVSDGPMSKTAVINAGDVPIMVGSKLCLLYGKTREERIRLREDERDAG 171

Query: 105 GYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLY 164
           GYFI NG ++V R  +    N P++  +         +    +  + VR+D    +  + 
Sbjct: 172 GYFISNGQDKVMRLHLDCLSNTPLAFTKYRSLSSMSEFAPAGIHYKGVREDGHVYSTVIQ 231

Query: 165 YLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPL 224
              +  + + F + G+   +P+ +VL+ALV T D EI+  +         KE G      
Sbjct: 232 ARKDSFLNVKFTVDGRHIYVPLMLVLRALVSTTDKEIYYTICSICASTDAKENG-----Y 286

Query: 225 VSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIF---- 280
           VS R++ +L +     + +   C Q +G  F+ ++  L     Y + +    D +F    
Sbjct: 287 VSLRIEAMLRDFHKYRIFSHKACKQLLGGKFRMILSLLDR---YDLTDMDCCDLLFERNL 343

Query: 281 ---VHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
              +   D   KFN++  M +K   L      SDNPD L +QE + PG     + K ++ 
Sbjct: 344 LINIPKEDTRAKFNMMCLMARKCLLLFGGFIKSDNPDLLSSQEAITPG----AFFKAEIA 399

Query: 338 DWLRKGKKLIQDEIENNGK--KFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQT 395
             L K  +LI     + G    ++  N      +      + + + + ++   G +    
Sbjct: 400 STLIKTMRLISRNATSTGAIGSYELSNSWISHYIASPKLWRSLTSGLRSLTGPGVMRAYR 459

Query: 396 GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTP 455
           G D    +G +V A+R+N++RF++ FR ++RG +FAG + TS+RKL PES+GF C VHTP
Sbjct: 460 GHDYSNMSGLSVLADRINYVRFLAHFRCINRGNAFAGHKITSIRKLYPESYGFQCAVHTP 519

Query: 456 DGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPA 515
           DG PCG+L H+   C  A+   S       +    ++  +L   G+ PSL ++       
Sbjct: 520 DGAPCGILTHL---CYKAAVLSSTPT----ADQTANLFMLLSQFGLSPSLSEVY------ 566

Query: 516 VLSVLLDGRVVGVIPSSE-IEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYL 574
            L+V+L+G V+G I ++E   K+VA +R  K+ AA + P    V     +    +PG+Y+
Sbjct: 567 TLAVVLNGTVLGFIDTNEHAAKLVACIRAAKIQAA-IFPSTEVVFIERDNKDRLFPGVYM 625

Query: 575 FTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHP 634
            TS  +F RPV ++      S + E I P EQ+F++I     GD  R      TH+EI P
Sbjct: 626 NTSMGRFYRPVHSLI-----SNSQEYITPLEQIFLQIAI--YGDDVRPGV--TTHQEITP 676

Query: 635 TGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVR 694
           T +LS++  L P+SDHNQSPRNMY+CQM KQTM    + L +R D K Y L TPQ PIVR
Sbjct: 677 TSLLSILGLLVPFSDHNQSPRNMYECQMLKQTMAIPCRNLSYRYDTKSYLLTTPQRPIVR 736

Query: 695 TNTYTKY-GIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLS 753
                   G D +PTGTN +VAV AYT YDMEDA ++NK+S++RG+ HG +Y    ID  
Sbjct: 737 NAIIHDLGGFDTHPTGTNLVVAVSAYTSYDMEDAALINKASLERGLFHGTVYSVHDIDCR 796

Query: 754 DDG--NKVDRGQKLF---RRNKDAKSLH------SVIDSDGLPYVGQMIHPGEPYCSIYD 802
           +D   + V    ++F   RR+ D    H      + +D DGLP VG  +  G  +   YD
Sbjct: 797 NDKMMSFVLTVAEVFPHLRRSPDYIITHMDENYDTELDEDGLPPVGSYLSHGSVFYQTYD 856

Query: 803 KTTNSWRTNSRKGSESVFVDYVAVDMKNS 831
                + T+     E  FV+ V V  K +
Sbjct: 857 PPKQRYTTHLYH-HEPGFVEKVIVIHKTT 884



 Score =  252 bits (643), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 138/298 (46%), Positives = 183/298 (61%), Gaps = 33/298 (11%)

Query: 829  KNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIIN 888
            K S    Q+  I  RH R P++GDK +SRHGQKG+    W   DMPF+  +G+ PDLIIN
Sbjct: 966  KASLCFIQRVRIVIRHDRTPVVGDKVASRHGQKGIMGIRWRQTDMPFTS-SGIVPDLIIN 1024

Query: 889  PHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGE- 947
            PHAFPSRMT+ ML+ES+A+K G  +  F+D++PF  S          DE ++ VD  GE 
Sbjct: 1025 PHAFPSRMTVGMLIESLASKIGVHYADFVDSSPFQWS----------DERRA-VDVFGEQ 1073

Query: 948  MLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQ 1007
            +L+T  FN +G EV+YS + G  +  +IFIG VYYQRLRHMV+DK+QVR+ G  D++T+Q
Sbjct: 1074 LLKTGQFNRYGSEVMYSAMTGDPMPADIFIGVVYYQRLRHMVTDKYQVRAEGPSDKVTKQ 1133

Query: 1008 PIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHP 1067
            PIKGRKRGGG+RFGEMERD+LLAHGA   L  RL T SD     VC+ CGS+L       
Sbjct: 1134 PIKGRKRGGGLRFGEMERDALLAHGAMASLRGRLCTESDAIEHVVCAACGSLLGM----- 1188

Query: 1068 QKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
                  ++GG           C  C+       + +P V   LA +LAAM +++   +
Sbjct: 1189 ------QLGG---------NVCRECKAIDHGRLIQIPMVLLVLANDLAAMGVRMRFNV 1231


>gi|195145272|ref|XP_002013620.1| GL24239 [Drosophila persimilis]
 gi|198452242|ref|XP_001358686.2| GA16485 [Drosophila pseudoobscura pseudoobscura]
 gi|194102563|gb|EDW24606.1| GL24239 [Drosophila persimilis]
 gi|198131848|gb|EAL27829.2| GA16485 [Drosophila pseudoobscura pseudoobscura]
          Length = 1176

 Score =  370 bits (950), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 321/1148 (27%), Positives = 508/1148 (44%), Gaps = 150/1148 (13%)

Query: 34   MFDHCRQAKISYTGKLMADV-EFQYLDAGSPV--VRERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+ + + ++   PV    ++   G+ P+ML++  C L     
Sbjct: 110  MPNEARLRNLTYSAPLYVDITKTKNVEGLDPVETQHQKTFIGKIPIMLRSTYCLLSQLTD 169

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  Y  K  +  
Sbjct: 170  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGK--YAFKTEIRS 224

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  +  GS  +     G+  +         +P+ IV +AL    D +
Sbjct: 225  CLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 284

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAE---VQDLSLTTRLQCLQHIGEHFQP 257
            I  H+   +D+           P + E VK  L E   VQ+ ++      L  IG   + 
Sbjct: 285  ILEHIIYDFDD-----------PEMMEMVKPSLDEAFVVQEQNVA-----LNFIGA--RG 326

Query: 258  VIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNP 313
               G+  +     A+ +++  +  H+  ++     K   L +M+ +L          D+ 
Sbjct: 327  ARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDR 386

Query: 314  DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKN 373
            D   N+ + L G L+    +   ++ +++ +   Q  I+  GK F      N++  ++ N
Sbjct: 387  DHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDR-GKDF------NLELAIKTN 439

Query: 374  PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
                I   +   L TG    Q     Q RAG +    RL F   +S  R V+      G 
Sbjct: 440  I---ITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG- 494

Query: 434  RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
            +    R+L    WG LCP  TP+G   GL+ ++     ++                + IL
Sbjct: 495  KLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPIL 543

Query: 494  RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VS 547
              L    M  +L ++  S       + ++G  VG+    + E+++A LR+L+      VS
Sbjct: 544  EFLEEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVS 600

Query: 548  AASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN---------- 597
              S+I D  +      +  G      L       +    ++ +  E   N          
Sbjct: 601  EVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKTHVEMLKERDYNNYSWQVLVAS 660

Query: 598  --IELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQ 652
              +E I   E+   M    P      +  A+  T  H EIHP  +L V A++ P+ DHNQ
Sbjct: 661  GVVEYIDTLEEETVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQ 720

Query: 653  SPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNA 712
            SPRN YQ  M KQ MG  +     R D   + L  P  P+V T +       E P G N+
Sbjct: 721  SPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINS 780

Query: 713  IVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-------ETIDLSDDGNKVDRGQKL 765
            IVA+L YTGY+ ED++ILN S+V+RG      Y++          D  ++  K  RG   
Sbjct: 781  IVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSENKRVGDQEENFEKPHRGTCQ 840

Query: 766  FRRNKDAKSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSR- 813
              RN     L    D DG+             +G+ I   E    +   T    + ++  
Sbjct: 841  GMRNAHYDKL----DDDGIIAPGIRVSGDDVVIGKTITLPENDDELDSNTKRFAKRDAST 896

Query: 814  --KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDI 871
              + SE+  VD V + + NS+   +   IR R  R P IGDKF+SRHGQKG C   +   
Sbjct: 897  FLRNSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQE 954

Query: 872  DMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNG 931
            DMPF+   G+ PD+IINPHA PSRMTI  L+E +  K GS  G+  DATPF ++V     
Sbjct: 955  DMPFT-CEGLAPDIIINPHAIPSRMTIGHLIECLQGKLGSNKGEIGDATPFNDAVN---- 1009

Query: 932  DTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSD 991
                      V ++   L+  G++  G EV+Y+G  G ++  ++F+GP YYQRL+HMV D
Sbjct: 1010 ----------VQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDD 1059

Query: 992  KFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVAD 1051
            K   R+ G +  + RQP++GR R GG+RFGEMERD  ++HGAA  L +RL   SD +   
Sbjct: 1060 KIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVH 1119

Query: 1052 VCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLA 1111
            +C+ CG +  A   +                      C  C+    +  V +PY  + L 
Sbjct: 1120 ICNFCGLIAIANLRN------------------NTFECKGCKNKTQISQVRLPYAAKLLF 1161

Query: 1112 AELAAMNI 1119
             EL +MNI
Sbjct: 1162 QELMSMNI 1169


>gi|324120600|dbj|BAJ78691.1| RNA polymerase II second largest subunit [Petrobiellus takunagae]
          Length = 1151

 Score =  370 bits (950), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 317/1142 (27%), Positives = 509/1142 (44%), Gaps = 138/1142 (12%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   +    ++   G+ P+ML++  C L G   
Sbjct: 84   MPNEARLRNLTYSAPLYVDITKTVVKDGEDPIETQHQKTFIGKIPIMLRSTYCLLNGLTD 143

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  Y  K+ +  
Sbjct: 144  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKYAY--KSEIRS 198

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  L  G   +     G++ +         +P+ IV +AL    D +
Sbjct: 199  CLEHSSRPTSTLWVNMLARGGQSVKKSSVGQKIIAILPYIKQEIPIMIVFRALGFVADRD 258

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHI-GEHFQPVI 259
            I  H+   +D+           P + E VK  L E     +  +   L  I G   +P  
Sbjct: 259  ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGGRGAKP-- 303

Query: 260  DGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
             G+  E     A  +++  +  H+  ++     K   L +M+ +L          D+ D 
Sbjct: 304  -GVTREKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDH 362

Query: 316  LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPS 375
              N+ + L G L+    +   ++ +++ +   Q  I + GK F+   LA IK       +
Sbjct: 363  YGNKRLDLAGPLLAFLFRGMFKNLMKEVRMYAQKFI-DRGKDFN-LELA-IK-------T 412

Query: 376  KQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
            K I   +   L TG    Q     Q RAG +    RL F   +S  R V+      G + 
Sbjct: 413  KIITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KL 470

Query: 436  TSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV 495
               R+L    WG +CP  TP+G   GL+ ++     ++                + IL  
Sbjct: 471  AKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEF 519

Query: 496  LIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAA 549
            L    M  +L ++  S       + ++G  VG+    + E++++ LR+L+      VS  
Sbjct: 520  LEEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMSTLRKLRRQMDIIVSEV 576

Query: 550  SVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------ 597
            S+I D  +      +  G      L     + +   R++ +  E   N            
Sbjct: 577  SMIRDIRDREIRIYTDAGRICRPLLIVENGRLLLKKRHVDMLKEREYNNYGWQDLVASSA 636

Query: 598  IELIGPF-EQVFMEIRCPDGGDGGRRNAFPA--THEEIHPTGMLSVVANLTPYSDHNQSP 654
            +E I    E+  M     D     +  A+    TH EIHP  +L V A++ P+ DHNQSP
Sbjct: 637  VEYIDTLEEETVMIAMSLDDLRQDKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSP 696

Query: 655  RNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIV 714
            RN YQ  M KQ MG  +     R D   + L  PQ P+V T +       E P G N++V
Sbjct: 697  RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSVV 756

Query: 715  AVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD-GNKVDRGQKLFRRNKDA- 772
            A+  YTGY+ ED++I+N S+V+RG       +      S   G++ ++ +K  R+     
Sbjct: 757  AIACYTGYNQEDSVIMNASAVERGFFRSVFMRAYKDSESKRVGDQEEQFEKPTRQTCQGM 816

Query: 773  -KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSR---KGSE 817
              +++  +D DG+             +G+ I   E    +   T    + ++    + SE
Sbjct: 817  RNAIYDKLDDDGIIAPGIRVSGDDVIIGKTITLPENDDELEGTTKRYTKRDASTFLRNSE 876

Query: 818  SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
            +  VD V + + NS+   +   IR R  R P IGDKF+SRHGQKG C   +   DMPF+ 
Sbjct: 877  TGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT- 933

Query: 878  VTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDE 937
              G+ PD+IINPHA PSRMTI  L+E +  K  S  G+  DATPF ++V           
Sbjct: 934  CEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSSNKGEIGDATPFNDAVN---------- 983

Query: 938  SKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRS 997
                V ++  +L+  G+   G EV+++G  G ++  ++F+GP YYQRL+HMV DK   R+
Sbjct: 984  ----VQKISALLQEYGYQLRGNEVMFNGHSGRKINAQVFLGPTYYQRLKHMVDDKIHSRA 1039

Query: 998  TGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCG 1057
             G +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +RL   SD +   VC+ CG
Sbjct: 1040 RGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCG 1099

Query: 1058 SVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAM 1117
             +  A   +                      C  C+    +  V +PY  + L  EL +M
Sbjct: 1100 LIAIANLRN------------------NTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 1141

Query: 1118 NI 1119
            NI
Sbjct: 1142 NI 1143


>gi|195109863|ref|XP_001999501.1| GI23040 [Drosophila mojavensis]
 gi|193916095|gb|EDW14962.1| GI23040 [Drosophila mojavensis]
          Length = 1176

 Score =  370 bits (950), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 324/1162 (27%), Positives = 513/1162 (44%), Gaps = 178/1162 (15%)

Query: 34   MFDHCRQAKISYTGKLMADV-EFQYLDAGSPV--VRERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+ + + ++   PV    ++   G+ P+ML++  C L     
Sbjct: 110  MPNEARLRNLTYSAPLYVDITKTKNVEGMDPVETQHQKTFIGKIPIMLRSTYCLLSQLTD 169

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  Y  K  +  
Sbjct: 170  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGK--YAFKTEIRS 224

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  +  GS  +     G+  +         +P+ IV +AL    D +
Sbjct: 225  CLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 284

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAE---VQDLSLTTRLQCLQHIGEHFQP 257
            I  H+   +D+           P + E VK  L E   VQ+ ++      L  IG   + 
Sbjct: 285  ILEHIIYDFDD-----------PEMMEMVKPSLDEAFVVQEQNVA-----LNFIGA--RG 326

Query: 258  VIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNP 313
               G+  +     A+ +++  +  H+  ++     K   L +M+ +L          D+ 
Sbjct: 327  ARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDR 386

Query: 314  DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKN 373
            D   N+ + L G L+    +   ++ +++ +   Q  I+  GK F      N++  ++ N
Sbjct: 387  DHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDR-GKDF------NLELAIKTN 439

Query: 374  PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
                I   +   L TG    Q     Q RAG +    RL F   +S  R V+      G 
Sbjct: 440  I---ITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG- 494

Query: 434  RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
            +    R+L    WG LCP  TP+G   GL+ ++     ++                + IL
Sbjct: 495  KLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPIL 543

Query: 494  RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VS 547
              L    M  +L ++  S       + ++G  VG+    + E+++A LR+L+      VS
Sbjct: 544  EFLEEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVS 600

Query: 548  AASVIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------------RNISLPSE 593
              S+I D  D E+               ++T   +  RP+             ++ +  E
Sbjct: 601  EVSMIRDIRDREI--------------RIYTDAGRICRPLLIVENGTLLLKKTHVEMLKE 646

Query: 594  ESQN------------IELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGML 638
               N            +E I   E+   M    P      +  A+  T  H EIHP  +L
Sbjct: 647  RDYNNYSWQVLVASGVVEYIDTLEEETVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMIL 706

Query: 639  SVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTY 698
             V A++ P+ DHNQSPRN YQ  M KQ MG  +     R D   + L  P  P+V T + 
Sbjct: 707  GVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSM 766

Query: 699  TKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-------ETID 751
                  E P G N+IVA+L YTGY+ ED++ILN S+V+RG      Y++          D
Sbjct: 767  EYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDAENKRVGD 826

Query: 752  LSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGL-----------PYVGQMIHPGEPYCSI 800
              ++  K  RG     RN     L    D DG+             +G+ I   E    +
Sbjct: 827  QEENFEKPHRGTCQGMRNAHYDKL----DDDGIIAPGIRVSGDDVVIGKTITLPENDDEL 882

Query: 801  YDKTTNSWRTNSR---KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSR 857
               T    + ++    + SE+  VD V + + NS+   +   IR R  R P IGDKF+SR
Sbjct: 883  DSNTKRFAKRDASTFLRNSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASR 940

Query: 858  HGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFM 917
            HGQKG C   +   DMPF+   G+ PD+IINPHA PSRMTI  L+E +  K GS  G+  
Sbjct: 941  HGQKGTCGIQYRQEDMPFT-CEGLAPDIIINPHAIPSRMTIGHLIECLQGKLGSNKGEIG 999

Query: 918  DATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFI 977
            DATPF ++V               V ++   L+  G++  G EV+Y+G  G ++  ++F+
Sbjct: 1000 DATPFNDAVN--------------VQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFL 1045

Query: 978  GPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLL 1037
            GP YYQRL+HMV DK   R+ G +  + RQP++GR R GG+RFGEMERD  ++HGAA  L
Sbjct: 1046 GPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFL 1105

Query: 1038 HDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKG 1097
             +RL   SD +   +C+ CG +  A   +                      C  C+    
Sbjct: 1106 RERLFEVSDPYRVHICNFCGLIAIANLRN------------------NTFECKGCKNKTQ 1147

Query: 1098 METVAMPYVFRYLAAELAAMNI 1119
            +  V +PY  + L  EL +MNI
Sbjct: 1148 ISQVRLPYAAKLLFQELMSMNI 1169


>gi|50303683|ref|XP_451784.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49640916|emb|CAH02177.1| KLLA0B05577p [Kluyveromyces lactis]
          Length = 1221

 Score =  370 bits (950), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 326/1135 (28%), Positives = 484/1135 (42%), Gaps = 172/1135 (15%)

Query: 71   FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSM 130
             G+ P+ML+++ C L       L  LKE   +MGGYFI+NG E+V     L  Q      
Sbjct: 161  IGRVPIMLRSKYCLLDDLTESDLYRLKECPFDMGGYFIINGSEKV-----LIAQERSAGN 215

Query: 131  VRSSFRDRREGYTDKAVVIRCVRKDQS----SVTLKLYYLLNGSVR-LGFWLQGKEYLLP 185
            +   F+            IR   +  S    ++ +KLY     + R +   L   +  +P
Sbjct: 216  IVQVFKKSAPSPISHIAEIRSALEKGSRFISTLQVKLYGREGSTSRTIKATLPYIKQDIP 275

Query: 186  VGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAE---VQDLSLT 242
            + I+ +AL    D EI  H+  CYD         V    + E +K  + E   +QD    
Sbjct: 276  IVIIFRALGIIPDGEILEHI--CYD---------VNDWQMLEMLKPCVEEGFVIQD---- 320

Query: 243  TRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLND----NNDKFNLLIFMLQ 298
             R   L  IG     +  G++ E     A+ +++     H+       + K   L +M+ 
Sbjct: 321  -RETALDFIGRRGTAL--GIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMIN 377

Query: 299  KLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKF 358
            +L          D+ D    + + L G L+    K       R   + +Q  +E   K F
Sbjct: 378  RLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTRDILRFMQRSVEE-AKDF 436

Query: 359  DFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFI 418
                  N+K  ++   +  I   ++  L TG    Q    +  RAG +    R  +   +
Sbjct: 437  ------NLKLAVK---ATTITAGLKYALATGNWGEQKK-SMSSRAGVSQVLNRYTYSSTL 486

Query: 419  SFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDS 478
            S  R  +      G +    R+L    WG +CP  TP+G+ CGL+ +++    ++   D 
Sbjct: 487  SHLRRTNTPIGRDG-KLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDP 545

Query: 479  RGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV--IPSSEIEK 536
                         I+  L   GM P L   +    P    V ++G   G+   P+  ++ 
Sbjct: 546  -----------LPIITFLNEWGMEP-LEDYIPHQSPDATRVFVNGVWHGIHRNPAKLVDT 593

Query: 537  VVAHLRRLKVSAASVIPDDLEVGYVPL--SLGGAYPGLYLFTSPPKFVRP--------VR 586
            +    R+  ++    I  D+    + +    G  Y  L++    P+  R         VR
Sbjct: 594  IRKLRRKGDITPEVSIVRDIREKELKIFTDAGRVYRPLFIVDENPETGRKELKVKKGHVR 653

Query: 587  NISLPS----------EESQN-----------IELIGPFEQVFMEIR------------- 612
             + L            EE  N           +E I   E+  + I              
Sbjct: 654  KLMLTEYQDIEGGFDDEEEMNYTWTSLLNEGLVEYIDAEEEETILIAMQHEDLDPALLPV 713

Query: 613  --CPDGGDGGRR-----NAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQ 665
                D  D  RR     N+   TH EIHP+ +L V A++ P+ DHNQSPRN YQ  M KQ
Sbjct: 714  ADSEDDLDPARRIRAIHNSNIFTHCEIHPSMILGVAASVIPFPDHNQSPRNTYQSAMGKQ 773

Query: 666  TMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDME 725
             MG  +     R D     L  PQ P+  T         E P G NAIVA+  Y+GY+ E
Sbjct: 774  AMGVFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQE 833

Query: 726  DAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSV---IDSD 782
            D+MI+N+SS+DRG+     +++        G  +    +   R    +  H     +D D
Sbjct: 834  DSMIMNQSSIDRGLFRSLFFRSYMDQEKRIGMSITESFEKPHRTNTLRMKHGTYDKLDDD 893

Query: 783  GLPYVGQMIHPGEPYCSIYDKTT---------------NSWRTNSR--KGSESVFVDYVA 825
            GL   G  +   +    I  KTT               +S R  S   + +E+  VD V 
Sbjct: 894  GLIAPGVRVSGDD---MIIGKTTPIPPDAEELGQRTAFHSKRDASTPLRSTENGIVDQVL 950

Query: 826  VDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDL 885
            +   N + L +   +R R T+ P IGDKF+SRHGQKG     +   DMPF+   G+ PDL
Sbjct: 951  I-TTNQEGL-KFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYRTEDMPFTA-EGVVPDL 1007

Query: 886  IINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDEL 945
            IINPHA PSRMT+A L+E + +K  +L G   DA+PF +                 VD +
Sbjct: 1008 IINPHAIPSRMTVAHLIECLLSKVAALSGNEGDASPFTDIT---------------VDGI 1052

Query: 946  GEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQIT 1005
              +LR  G+   G EV+Y+G  G +L  +IF GP YYQRLRHMV DK   R+ G M  +T
Sbjct: 1053 SRLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLT 1112

Query: 1006 RQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSV-LTATF 1064
            RQP++GR R GG+RFGEMERD ++AHGAA  L +RL   SD     +C +CG + + A  
Sbjct: 1113 RQPVEGRSRDGGLRFGEMERDCMIAHGAAAFLKERLMEASDAFRVHICGICGLMSVVAKL 1172

Query: 1065 IHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
             H Q                    C +C+    +  V +PY  + L  EL AMNI
Sbjct: 1173 KHNQ------------------FECRSCKNKIDIYQVHIPYAAKLLFQELMAMNI 1209


>gi|195446199|ref|XP_002070673.1| GK12191 [Drosophila willistoni]
 gi|194166758|gb|EDW81659.1| GK12191 [Drosophila willistoni]
          Length = 1176

 Score =  370 bits (949), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 321/1148 (27%), Positives = 508/1148 (44%), Gaps = 150/1148 (13%)

Query: 34   MFDHCRQAKISYTGKLMADV-EFQYLDAGSPV--VRERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+ + + ++   PV    ++   G+ P+ML++  C L     
Sbjct: 110  MPNEARLRNLTYSAPLYVDITKTKNVEGLDPVETQHQKTFIGKIPIMLRSTYCLLSQLTD 169

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  Y  K  +  
Sbjct: 170  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGK--YAFKTEIRS 224

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  +  GS  +     G+  +         +P+ IV +AL    D +
Sbjct: 225  CLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 284

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAE---VQDLSLTTRLQCLQHIGEHFQP 257
            I  H+   +D+           P + E VK  L E   VQ+ ++      L  IG   + 
Sbjct: 285  ILEHIIYDFDD-----------PEMMEMVKPSLDEAFVVQEQNVA-----LNFIGA--RG 326

Query: 258  VIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNP 313
               G+  +     A+ +++  +  H+  ++     K   L +M+ +L          D+ 
Sbjct: 327  ARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDR 386

Query: 314  DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKN 373
            D   N+ + L G L+    +   ++ +++ +   Q  I+  GK F      N++  ++ N
Sbjct: 387  DHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDR-GKDF------NLELAIKTN 439

Query: 374  PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
                I   +   L TG    Q     Q RAG +    RL F   +S  R V+      G 
Sbjct: 440  I---ITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG- 494

Query: 434  RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
            +    R+L    WG LCP  TP+G   GL+ ++     ++                + IL
Sbjct: 495  KLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPIL 543

Query: 494  RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VS 547
              L    M  +L ++  S       + ++G  VG+    + E+++A LR+L+      VS
Sbjct: 544  EFLEEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVS 600

Query: 548  AASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN---------- 597
              S+I D  +      +  G      L       +    ++ +  E   N          
Sbjct: 601  EVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKTHVEMLKERDYNNYSWQVLVAS 660

Query: 598  --IELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQ 652
              +E I   E+   M    P      +  A+  T  H EIHP  +L V A++ P+ DHNQ
Sbjct: 661  GVVEYIDTLEEETVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQ 720

Query: 653  SPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNA 712
            SPRN YQ  M KQ MG  +     R D   + L  P  P+V T +       E P G N+
Sbjct: 721  SPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINS 780

Query: 713  IVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-------ETIDLSDDGNKVDRGQKL 765
            IVA+L YTGY+ ED++ILN S+V+RG      Y++          D  ++  K  RG   
Sbjct: 781  IVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDAENKRVGDQEENFEKPHRGTCQ 840

Query: 766  FRRNKDAKSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSR- 813
              RN     L    D DG+             +G+ I   E    +   T    + ++  
Sbjct: 841  GMRNAHYDKL----DDDGIIAPGIRVSGDDVVIGKTITLPENDDELDSNTKRFAKRDAST 896

Query: 814  --KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDI 871
              + SE+  VD V + + NS+   +   IR R  R P IGDKF+SRHGQKG C   +   
Sbjct: 897  FLRNSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQE 954

Query: 872  DMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNG 931
            DMPF+   G+ PD+IINPHA PSRMTI  L+E +  K GS  G+  DATPF ++V     
Sbjct: 955  DMPFT-CEGLAPDIIINPHAIPSRMTIGHLIECLQGKLGSNKGEIGDATPFNDAVN---- 1009

Query: 932  DTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSD 991
                      V ++   L+  G++  G EV+Y+G  G ++  ++F+GP YYQRL+HMV D
Sbjct: 1010 ----------VQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDD 1059

Query: 992  KFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVAD 1051
            K   R+ G +  + RQP++GR R GG+RFGEMERD  ++HGAA  L +RL   SD +   
Sbjct: 1060 KIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVH 1119

Query: 1052 VCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLA 1111
            +C+ CG +  A   +                      C  C+    +  V +PY  + L 
Sbjct: 1120 ICNFCGLIAIANLRN------------------NTFECKGCKNKTQISQVRLPYAAKLLF 1161

Query: 1112 AELAAMNI 1119
             EL +MNI
Sbjct: 1162 QELMSMNI 1169


>gi|324120598|dbj|BAJ78690.1| RNA polymerase II second largest subunit [Pedetontus unimaculatus]
          Length = 1176

 Score =  370 bits (949), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 317/1142 (27%), Positives = 509/1142 (44%), Gaps = 138/1142 (12%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   +    ++   G+ P+ML++  C L G   
Sbjct: 109  MPNEARLRNLTYSAPLYVDITKTVVKDGEDPIETQHQKTFIGKIPIMLRSTYCLLNGLTD 168

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  Y  K+ +  
Sbjct: 169  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKYAY--KSEIRS 223

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  L  G   +     G++ +         +P+ IV +AL    D +
Sbjct: 224  CLEHSSRPTSTLWVNMLARGGQSVKKSSVGQKIIAILPYIKQEIPIMIVFRALGFVADRD 283

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHI-GEHFQPVI 259
            I  H+   +D+           P + E VK  L E     +  +   L  I G   +P  
Sbjct: 284  ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGGRGAKP-- 328

Query: 260  DGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
             G+  E     A  +++  +  H+  ++     K   L +M+ +L          D+ D 
Sbjct: 329  -GVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDH 387

Query: 316  LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPS 375
              N+ + L G L+    +   ++ +++ +   Q  I + GK F+   LA IK       +
Sbjct: 388  YGNKRLDLAGPLLAFLFRGMFKNLMKEVRMYAQKFI-DRGKDFN-LELA-IK-------T 437

Query: 376  KQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
            K I   +   L TG    Q     Q RAG +    RL F   +S  R V+      G + 
Sbjct: 438  KIITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KL 495

Query: 436  TSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV 495
               R+L    WG +CP  TP+G   GL+ ++     ++                + IL  
Sbjct: 496  AKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEF 544

Query: 496  LIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAA 549
            L    M  +L ++  S       + ++G  VG+    + E++++ LR+L+      VS  
Sbjct: 545  LEEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMSTLRKLRRQMDIIVSEV 601

Query: 550  SVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------ 597
            S+I D  +      +  G      L     + +   R++ +  E   N            
Sbjct: 602  SMIRDIRDREIRIYTDAGRICRPLLIVENGRLLLKKRHVDMLKEREYNNYGWQDLVASSA 661

Query: 598  IELIGPF-EQVFMEIRCPDGGDGGRRNAFPA--THEEIHPTGMLSVVANLTPYSDHNQSP 654
            +E I    E+  M     D     +  A+    TH EIHP  +L V A++ P+ DHNQSP
Sbjct: 662  VEYIDTLEEETVMIAMSLDDLRQDKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSP 721

Query: 655  RNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIV 714
            RN YQ  M KQ MG  +     R D   + L  PQ P+V T +       E P G N++V
Sbjct: 722  RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSVV 781

Query: 715  AVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD-GNKVDRGQKLFRRNKDA- 772
            A+  YTGY+ ED++I+N S+V+RG       +      S   G++ ++ +K  R+     
Sbjct: 782  AIACYTGYNQEDSVIMNASAVERGFFRSVFMRAYKDSESKRVGDQEEQFEKPTRQTCQGM 841

Query: 773  -KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSR---KGSE 817
              +++  +D DG+             +G+ I   E    +   T    + ++    + SE
Sbjct: 842  RNAIYDKLDDDGIIAPGIRVSGDDVIIGKTITLPENDDELEGTTRRYTKRDASTFLRNSE 901

Query: 818  SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
            +  VD V + + NS+   +   IR R  R P IGDKF+SRHGQKG C   +   DMPF+ 
Sbjct: 902  TGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT- 958

Query: 878  VTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDE 937
              G+ PD+IINPHA PSRMTI  L+E +  K  S  G+  DATPF ++V           
Sbjct: 959  CEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSSNKGEIGDATPFNDAVN---------- 1008

Query: 938  SKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRS 997
                V ++  +L+  G+   G EV+++G  G ++  ++F+GP YYQRL+HMV DK   R+
Sbjct: 1009 ----VQKISALLQEYGYQLRGNEVMFNGHSGRKINAQVFLGPTYYQRLKHMVDDKIHSRA 1064

Query: 998  TGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCG 1057
             G +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +RL   SD +   VC+ CG
Sbjct: 1065 RGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCG 1124

Query: 1058 SVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAM 1117
             +  A   +                      C  C+    +  V +PY  + L  EL +M
Sbjct: 1125 LIAIANLRN------------------NTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 1166

Query: 1118 NI 1119
            NI
Sbjct: 1167 NI 1168


>gi|17552304|ref|NP_498047.1| Protein RPB-2 [Caenorhabditis elegans]
 gi|2507348|sp|Q10578.2|RPB2_CAEEL RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
            polymerase II subunit 2; Short=RNA polymerase II subunit
            B2
 gi|351058294|emb|CCD65728.1| Protein RPB-2 [Caenorhabditis elegans]
          Length = 1193

 Score =  370 bits (949), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 321/1146 (28%), Positives = 503/1146 (43%), Gaps = 148/1146 (12%)

Query: 34   MFDHCRQAKISYTGKLMADVE--FQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQ 91
            M +  R   ++Y   L  D+       D+ +  V ++   G+ PVML++  C L     +
Sbjct: 116  MPNEARLRNLTYASPLYVDITKVVTRDDSATEKVYDKVFVGKVPVMLRSSYCMLSNMTDR 175

Query: 92   KLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC 151
             L  L E   + GGYF++NG E+V   +I  ++    ++   S +D +  Y  K     C
Sbjct: 176  DLTELNECPLDPGGYFVINGSEKV---LIAQEKMATNTVYVFSMKDGK--YAFKTECRSC 230

Query: 152  VRKD-QSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLEI 201
            +    + + T+ +  L  G         G+  +         +P+ IV +AL   +D +I
Sbjct: 231  LENSSRPTSTMWVNMLARGGGGGKKTAMGQRIIGILPYIKQEIPIMIVFRALGFVSDRDI 290

Query: 202  FNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEH-FQPVID 260
              H+   YD            P + E VK  L E     +  +   L  IG    +P   
Sbjct: 291  LGHII--YD---------FNDPEMMEMVKPSLDEA--FVIQEQNVALNFIGARGAKP--- 334

Query: 261  GLQSESYYAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     A  +++  +  H+    +    K   + +M+ +L          D+ D +
Sbjct: 335  GVTREQRIKYAREILQKELLPHVGVSEHCETKKAFFIGYMVHRLLLAALGRRELDDRDHI 394

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +    + L++ +   Q  I  N    D F L    K      + 
Sbjct: 395  GNKRLDLAGPLLAFLFRSLFRNLLKEMRMTAQKYINKN----DDFALDVCVK------TS 444

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   +   L TG    Q     Q RAG +    RL +   +S  R  +      G +  
Sbjct: 445  TITRGLTYSLATGNWGDQKKAH-QSRAGVSQVLNRLTYTATLSHLRRANSPIGREG-KLA 502

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G+  GL+ ++         Y S G++ +       IL  L
Sbjct: 503  KPRQLHNTQWGMVCPAETPEGQAVGLVKNLALMA-----YISVGSLPE------PILEFL 551

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  S       + ++G  VG+    E ++++  L++L+      VS  S
Sbjct: 552  EEWSM-ENLEEVSPSAIADATKIFVNGAWVGI--HREPDQLMTTLKKLRRQMDIIVSEVS 608

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------- 597
            ++ D  +      +  G      L     K     R+I    E +               
Sbjct: 609  MVRDIRDREIRIYTDAGRVCRPLLIVENQKLALKKRHIDQLKEAADEANKYTWSDLVGGG 668

Query: 598  -IELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSP 654
             +ELI   E+    + +   D   GG  +    TH EIHP  +L V A++ P+ DHNQSP
Sbjct: 669  VVELIDSMEEETSMIAMMPEDLRSGGYCDTH--THCEIHPAMILGVCASIIPFPDHNQSP 726

Query: 655  RNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIV 714
            RN YQ  M KQ MG        R D   + L  PQ P+V T +      +E P G NAIV
Sbjct: 727  RNTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFNELPAGINAIV 786

Query: 715  AVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAK- 773
            A+L+Y+GY+ ED++I+N S++DRG+     Y++      ++ N  +  ++L  +    K 
Sbjct: 787  AILSYSGYNQEDSVIMNNSAIDRGLFRSVFYRSYR---DNEANLDNANEELIEKPTREKC 843

Query: 774  -----SLHSVIDSDGLPYVGQMIHPGEPYC-------SIYDKTTNSWRTNSRK------- 814
                 SL+  +D DG+   G  +   +           I D    S +   ++       
Sbjct: 844  SGMRHSLYDKLDEDGIISPGMRVSGDDVIIGKTVALPDIDDDLDASGKKYPKRDASTFLR 903

Query: 815  GSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMP 874
             SE+  VD V + + +  N  +   IR R  R P IGDKF+SRHGQKG    ++   DMP
Sbjct: 904  SSETGIVDQVMLSLNSDGN--KFVKIRMRSVRLPQIGDKFASRHGQKGTMGIMYRQEDMP 961

Query: 875  FSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTG 934
            F+   G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF ++V        
Sbjct: 962  FTA-EGLTPDIIINPHAVPSRMTIGHLIECLQGKLSANKGEIGDATPFNDTVN------- 1013

Query: 935  TDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQ 994
                   V ++  +L   G++  G EV+Y+G  G +LT +IF GP YYQRL+HMV DK  
Sbjct: 1014 -------VQKISGLLCEYGYHLRGNEVMYNGHTGKKLTTQIFFGPTYYQRLKHMVDDKIH 1066

Query: 995  VRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSD-YHVADVC 1053
             R+ G +  + RQP++GR R GG+RFGEMERD  ++HGA   L +RL   SD YHV  VC
Sbjct: 1067 SRARGPIQMMNRQPMEGRARDGGLRFGEMERDCQISHGATQFLRERLFEVSDPYHVY-VC 1125

Query: 1054 SLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAE 1113
            + CG ++ A                          C AC+    +  V +PY  + L  E
Sbjct: 1126 NNCGLIVVANL------------------RTNSFECKACRNKTQVSAVRIPYACKLLFQE 1167

Query: 1114 LAAMNI 1119
            L +M+I
Sbjct: 1168 LMSMSI 1173


>gi|336272055|ref|XP_003350785.1| hypothetical protein SMAC_02456 [Sordaria macrospora k-hell]
          Length = 1117

 Score =  370 bits (949), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 309/1130 (27%), Positives = 505/1130 (44%), Gaps = 150/1130 (13%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMF--------------------------------- 35
            F  ++ LV+ HI+S++Y ++E + ++                                  
Sbjct: 38   FLKVKGLVKQHIDSYNYFVNEEIKDIVKANRVVRSDQDPNFWLEFRDIRVGMPTRTEDGE 97

Query: 36   -----DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADS 90
                 + CR   ++Y   +  +V+  Y    S +VR+     + PVMLK+ +C+L GA +
Sbjct: 98   QVQSRNPCRLRDLTYAAPV--EVDIAYTRDKSVIVRKNIPLCRIPVMLKSAKCYLNGATN 155

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
             ++    E   + GGYF++ G E+V    IL ++    + +     ++  G         
Sbjct: 156  AQMEVFNECPLDPGGYFVIGGTEKV----ILIQEQLSKNRIIVEADEKTGGVMASVTSST 211

Query: 151  CVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYD 210
              RK ++ V LK         R+          +P+ IVLKA    +D +I   L C  D
Sbjct: 212  HERKSKTYVVLK-------KDRIVLQHNTLSEPIPIVIVLKAFGGLSDNDII-ELVCGGD 263

Query: 211  EKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ-----PVIDGLQSE 265
             +Y+ +              I   E     + T+ Q L+++G   +     P        
Sbjct: 264  ARYQDD------------FLINFDEAGRAGVYTQQQALEYVGARVKMGGNRPKFGAAPRR 311

Query: 266  SYYAVAETVIRDYIFVHLN----DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEI 321
            ++       + + +  H+     D   K   +  M++++     +  + D+ D + N+ +
Sbjct: 312  NHAEEGLDALANLVIAHVTVEGLDFYPKAVYIAMMVRRVLMAAQNPKLVDDRDFVGNKRL 371

Query: 322  LLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTS 381
             L G LI++      ED  +K    ++  I+N  KK +  +  +    +  N    I   
Sbjct: 372  ELAGQLISLLF----EDLFKKFISDVKYNIDNFFKKPNRTSTYDPHGAIMAN-GHYISHG 426

Query: 382  IETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRK 440
            +   +++G    +   ++  RAG T    RL+++  +     +   + F   R  S  R 
Sbjct: 427  LNRAIQSGNWTVKR-FNMN-RAGITHVLSRLSYIAALGMMTRI--SSQFEKTRKVSGPRA 482

Query: 441  LLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVG 500
            L P  WG LC   TP+GE CGL+ ++     + +      N+ +   ++  I      VG
Sbjct: 483  LQPSQWGMLCTSDTPEGEACGLVKNLALMTHITT------NVPE-EPVKKMIFAADESVG 535

Query: 501  MIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGY 560
             I            + + + L+G    V  + E ++  A  R L+     V P      +
Sbjct: 536  PIREYTGTEMHSKGSYI-IHLNGTPFAV--TREPKRFAARFRTLR-RRGWVSP------F 585

Query: 561  VPLSLGGAYPGLYLFTSPPKFVRP---VRNIS--LPSEESQNIELIGPFEQVFMEIRCPD 615
            V + +   +  +++ T   +  RP   V+N    L +E  + ++L       F+     +
Sbjct: 586  VSIHINEHFSAVHIATDEGRICRPYIIVKNGKSMLKAEHLKMLQLGQATFDTFLTSGVVE 645

Query: 616  GGDGGRRN-----------AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAK 664
              D    N               TH EI P  +L  VA L P+  HNQSPRN YQC M K
Sbjct: 646  YLDVNEENDTLVALQEDQITNSTTHMEIEPFTILGAVAGLIPFPHHNQSPRNTYQCAMGK 705

Query: 665  QTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDM 724
            Q +G        R D  LY L  PQ P+V T T      D+ P G NA V V++Y+GYD+
Sbjct: 706  QAIGAIAYNQFNRIDTLLYTLVYPQRPMVITKTIQLIHYDKLPAGQNATVVVMSYSGYDI 765

Query: 725  EDAMILNKSSVDRGMCHGQIYQTETIDLSDDGN-KVDRGQKLFRRNKDAK-SLHSVIDSD 782
            EDA++LNK+S+DRG    Q+++  T +L    N + DR   + +   D   + H+++D+D
Sbjct: 766  EDALVLNKASLDRGFGRCQVFRKYTAELQGYTNGRRDRVGGIMKDEDDKPIAKHAILDAD 825

Query: 783  GLPYVGQMIHPGE-------PYCSIY-----DKTTNSWR---TNSRKGSESVFVDYVAVD 827
            GL  VG  +  G+       P   I      D+ ++ +R   TN R  S+   +D V + 
Sbjct: 826  GLAQVGSKVESGQTMIKKETPLDQISTGIAGDRGSDDYRDASTNYRI-SDPAIIDKVMIS 884

Query: 828  MKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLII 887
            +   +N  +   ++ R TR P +GDKFSSRHGQKGV   +  + DMPFS   G+RPD+I+
Sbjct: 885  VNEREN--KLIKVQTRQTRRPELGDKFSSRHGQKGVVGIIVNEEDMPFSD-KGLRPDIIM 941

Query: 888  NPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGE 947
            NPH FPSRMT+  L E +  K   + G+      F ++ +              V+ +G+
Sbjct: 942  NPHGFPSRMTVGKLFECLTGKASVIAGE--KDYGFGDAFR-----------SHPVESMGQ 988

Query: 948  MLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQ 1007
             L   GF++ G +   SG+ G  +   I+ GP++YQRL+HMV DK   RS G    +TRQ
Sbjct: 989  ALIDHGFSWEGKDYFTSGITGEPMEAYIYNGPIFYQRLKHMVQDKMHSRSRGPRAILTRQ 1048

Query: 1008 PIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCG 1057
            P +GR R GG+R GEMERD L+A+GA+ LL +RL   SD    DVC  CG
Sbjct: 1049 PTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLMISSDGTELDVCQECG 1098


>gi|389852853|ref|YP_006355087.1| DNA-directed RNA polymerase subunit B [Pyrococcus sp. ST04]
 gi|388250159|gb|AFK23012.1| DNA-directed RNA polymerase subunit B [Pyrococcus sp. ST04]
          Length = 1117

 Score =  370 bits (949), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 334/1212 (27%), Positives = 525/1212 (43%), Gaps = 226/1212 (18%)

Query: 15   LVRHHIESFDYMLDEGLSEMFDHCRQAK-------ISYTGKLMADVEFQ----------- 56
            LVR H++S++  ++ GL E+ +     K       + +    +   EFQ           
Sbjct: 27   LVRQHLDSYNAFIERGLQEVVNEFGGIKPDIPDFEVKFGKIRVGQPEFQEPHGQRKPLYP 86

Query: 57   --------------YLDAGSPVVRE------RFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
                          YL+   PV+R           G+ P+MLK++ C L G   ++L+ L
Sbjct: 87   MDARIRNLTYSAPLYLEM-IPVIRGIEQEPVEVRIGELPIMLKSKVCRLYGLSDEELIKL 145

Query: 97   KEEAAEMGGYFILNGLERVFRSV--ILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRK 154
             E+  + GGYFI+NG ERV  S+  I P +    ++V     +R+E Y  K    R   +
Sbjct: 146  GEDPKDPGGYFIINGSERVIVSIEDIAPNR----TLVEKD--ERQERYVAKVFSYRHGYR 199

Query: 155  DQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGI-----------VLKALVDTNDLEIFN 203
               +V  K                 K+ +L VGI           V++AL    D +I +
Sbjct: 200  ALVTVERK-----------------KDGILYVGIPNVPKPIKFVYVMRALGLERDRDIVD 242

Query: 204  HLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLS-LTTRLQCLQHIGEHFQPVIDGL 262
                           AVG+    E  +I+   ++D S +TT+ + L++IG+   P   G 
Sbjct: 243  ---------------AVGND--PEVQQILFDNLEDASDITTQQEALEYIGKLVAP---GQ 282

Query: 263  QSESYYAVAETVIRDYIFVHLNDNND----KFNLLIFMLQKLFSLVDHTSVSDNPDSLQN 318
              E     AE VI + +  H+  N +    K   L  M  K+  L       D+ D   N
Sbjct: 283  AREYRLKRAEYVIDNNLLPHMGVNPEDRIRKAYYLGMMALKVIELSLGRRDEDDKDHYAN 342

Query: 319  QEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQI 378
            + + L G L+    +      ++  +  +    +  G+K+ F N+              I
Sbjct: 343  KRLRLAGDLLKDLFRVAFGQLVKDIQYQMTKTYQRKGEKYTFGNIHRF-----------I 391

Query: 379  GTSIETMLKTGRL--ATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
              SI   + T R+  A  TG     R G +   +R N++  +S  R V            
Sbjct: 392  RNSIRPDVLTERIEHALATGAWPGGRTGVSQLLDRTNYVSTLSHLRRVTSPLDREQPHFE 451

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
            + R L    WG +CP  TP+G  CGL+ ++    ++ +           +     +   L
Sbjct: 452  A-RDLHGTHWGRICPTETPEGPNCGLVKNLALMSQITT-----------AVPEEEVKEYL 499

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEI--EKVVAHLRRLKVSAASVIP- 553
            + +G++P     V+   P +  V L+G ++G I   +   +++    R  K+S    +  
Sbjct: 500  MSLGIVPIE---VRRPSPELWRVYLNGVLIGTIEDGKALAQRIRQDRRNGKISDVINVAY 556

Query: 554  -DDLEVGYVPLSLGGAY-PGLYLFTSPPKFVRP-VRNISLPSEESQNIELIGPFEQVFME 610
             +D++  YV    G    P + +    PK  +  V+ +     +  ++  +G  E +  E
Sbjct: 557  YEDVKEVYVNSDDGRVRRPLIIVENGKPKLTKEHVQAVKEGRLKWSDLIRMGVIEYLDAE 616

Query: 611  IRCPDGGDGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQC 660
                        NA+ A          TH E+ P  +L + A+L PY +HN +PRN Y  
Sbjct: 617  ---------EEENAYVAMWPWEVTEEHTHLELMPAAILGLPASLVPYPEHNAAPRNTYGA 667

Query: 661  QMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYT 720
             MAKQ++G      + R D + + L  PQ P+V +      G ++ P G N IVAVLAY 
Sbjct: 668  GMAKQSLGLGWANFRIRVDTRGHLLHYPQVPLVDSRIMKAVGYEDRPAGQNFIVAVLAYQ 727

Query: 721  GYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVD------------RGQKLFR 767
            GY+MEDA+I+NK+S++RG+     ++T E  +    G + D            RG+K +R
Sbjct: 728  GYNMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIPAPTVRGYRGEKYYR 787

Query: 768  RNKDAKSLHSVIDSDGLPYVGQ-------MIHPGEPYCSIYDKTTNSWRTNSRKG----- 815
                       +D DGL +          +I    P   + ++   S     R+      
Sbjct: 788  N----------LDEDGLIFPESRVEGKDVLIGRTSPPRFLEERGLGSVALQERRETSVAV 837

Query: 816  --SESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDM 873
              SE   VD V +    + +  +   +  R  R P +GDKF+SRHGQKGV   + P  DM
Sbjct: 838  RPSEKGVVDKVII--TETGDGTKLVKVTVRDLRIPELGDKFASRHGQKGVIGLIVPQEDM 895

Query: 874  PFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDT 933
            P++  +G+ PDLI+NPH  PSRMT+  L+E++  K  SL G+ +D T F    ++     
Sbjct: 896  PWTE-SGIVPDLIVNPHGIPSRMTVGQLIEAIGGKVASLKGRRVDGTAFIGEPEEKLRKE 954

Query: 934  GTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKF 993
                               GF + G E++Y G+ G  L  +IF+G +YYQRL HMV+DK 
Sbjct: 955  LE---------------ELGFKHTGREIMYDGITGRRLEADIFVGVIYYQRLHHMVADKI 999

Query: 994  QVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVC 1053
              RS G +  +T+QP +GR R GG+RFGEMERD L+ HGAA LL +RL   SD     VC
Sbjct: 1000 HARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVC 1059

Query: 1054 SLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAE 1113
              CG +     I  ++R               KV C  C   + +  V M Y F+ L  E
Sbjct: 1060 ENCGHIA----IEDKRR--------------HKVYCPVCGEEERISKVEMSYAFKLLLDE 1101

Query: 1114 LAAMNIKITLQL 1125
            L AM I+  L L
Sbjct: 1102 LKAMVIRPKLNL 1113


>gi|194745991|ref|XP_001955468.1| GF16238 [Drosophila ananassae]
 gi|190628505|gb|EDV44029.1| GF16238 [Drosophila ananassae]
          Length = 1176

 Score =  370 bits (949), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 320/1148 (27%), Positives = 508/1148 (44%), Gaps = 150/1148 (13%)

Query: 34   MFDHCRQAKISYTGKLMADV-EFQYLDAGSPV--VRERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+ + + ++   P+    ++   G+ P+ML++  C L     
Sbjct: 110  MPNEARLRNLTYSAPLYVDITKTKNVEGQDPIETQHQKTFIGKIPIMLRSTYCLLSQLTD 169

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  Y  K  +  
Sbjct: 170  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGK--YAFKTEIRS 224

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  +  GS  +     G+  +         +P+ IV +AL    D +
Sbjct: 225  CLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 284

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAE---VQDLSLTTRLQCLQHIGEHFQP 257
            I  H+   +D+           P + E VK  L E   VQ+ ++      L  IG   + 
Sbjct: 285  ILEHIIYDFDD-----------PEMMEMVKPSLDEAFVVQEQNVA-----LNFIGA--RG 326

Query: 258  VIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNP 313
               G+  +     A+ +++  +  H+  ++     K   L +M+ +L          D+ 
Sbjct: 327  ARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDR 386

Query: 314  DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKN 373
            D   N+ + L G L+    +   ++ +++ +   Q  I+  GK F      N++  ++ N
Sbjct: 387  DHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDR-GKDF------NLELAIKTN 439

Query: 374  PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
                I   +   L TG    Q     Q RAG +    RL F   +S  R V+      G 
Sbjct: 440  I---ITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG- 494

Query: 434  RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
            +    R+L    WG LCP  TP+G   GL+ ++     ++                + IL
Sbjct: 495  KLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPIL 543

Query: 494  RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VS 547
              L    M  +L ++  S       + ++G  VG+    + E+++A LR+L+      VS
Sbjct: 544  EFLEEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVS 600

Query: 548  AASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN---------- 597
              S+I D  +      +  G      L       +    ++ +  E   N          
Sbjct: 601  EVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKTHVEMLKERDYNNYSWQVLVAS 660

Query: 598  --IELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQ 652
              +E I   E+   M    P      +  A+  T  H EIHP  +L V A++ P+ DHNQ
Sbjct: 661  GVVEYIDTLEEETVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQ 720

Query: 653  SPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNA 712
            SPRN YQ  M KQ MG  +     R D   + L  P  P+V T +       E P G N+
Sbjct: 721  SPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINS 780

Query: 713  IVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-------ETIDLSDDGNKVDRGQKL 765
            IVA+L YTGY+ ED++ILN S+V+RG      Y++          D  ++  K  RG   
Sbjct: 781  IVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSENKRVGDQEENFEKPHRGTCQ 840

Query: 766  FRRNKDAKSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSR- 813
              RN     L    D DG+             +G+ I   E    +   T    + ++  
Sbjct: 841  GMRNAHYDKL----DDDGIIAPGIRVSGDDVVIGKTITLPENDDELDSNTKRFAKRDAST 896

Query: 814  --KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDI 871
              + SE+  VD V + + NS+   +   IR R  R P IGDKF+SRHGQKG C   +   
Sbjct: 897  FLRNSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQE 954

Query: 872  DMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNG 931
            DMPF+   G+ PD+IINPHA PSRMTI  L+E +  K GS  G+  DATPF ++V     
Sbjct: 955  DMPFT-CEGLAPDIIINPHAIPSRMTIGHLIECLQGKLGSNKGEIGDATPFNDAVN---- 1009

Query: 932  DTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSD 991
                      V ++   L+  G++  G EV+Y+G  G ++  ++F+GP YYQRL+HMV D
Sbjct: 1010 ----------VQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDD 1059

Query: 992  KFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVAD 1051
            K   R+ G +  + RQP++GR R GG+RFGEMERD  ++HGAA  L +RL   SD +   
Sbjct: 1060 KIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVH 1119

Query: 1052 VCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLA 1111
            +C+ CG +  A   +                      C  C+    +  V +PY  + L 
Sbjct: 1120 ICNFCGLIAIANLRN------------------NTFECKGCKNKTQISQVRLPYAAKLLF 1161

Query: 1112 AELAAMNI 1119
             EL +MNI
Sbjct: 1162 QELMSMNI 1169


>gi|355712719|gb|AES04443.1| polymerase II polypeptide B, 140kDa [Mustela putorius furo]
          Length = 1104

 Score =  369 bits (948), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 311/1086 (28%), Positives = 492/1086 (45%), Gaps = 121/1086 (11%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   ++   ++   G+ P+ML++  C L G   
Sbjct: 61   MPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 120

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   + +D +  YT +     
Sbjct: 121  RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGECR--S 175

Query: 151  CVRKD-QSSVTLKLYYLLNGSV---------RLGFWLQGKEYLLPVGIVLKALVDTNDLE 200
            C+    + + T+ +  L  G           R+   L   +  +P+ IV +AL   +D +
Sbjct: 176  CLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRD 235

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +++           P + E VK  L E     +  +   L  IG   +    
Sbjct: 236  ILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAKP 280

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     A+ V++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 281  GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 340

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   ++ L++ +   Q  I + GK F+   LA IK       ++
Sbjct: 341  GNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFI-DRGKDFNL-ELA-IK-------TR 390

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   ++  L TG    Q     Q RAG +    RL F   +S  R ++      G +  
Sbjct: 391  IISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLA 448

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G   GL+ ++     ++                + IL  L
Sbjct: 449  KPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEFL 497

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  +       + ++G  VG+    + E+++  LR+L+      VS  S
Sbjct: 498  EEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEVS 554

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
            +I D  E      +  G      L     K +   R+I    E   N            +
Sbjct: 555  MIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVV 614

Query: 599  ELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656
            E I   E+  V + +   D  +         TH EIHP+ +L V A++ P+ DHNQSPRN
Sbjct: 615  EYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRN 674

Query: 657  MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
             YQ  M KQ MG  +     R D   + L  PQ P+V T +       E P G N+IVA+
Sbjct: 675  TYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAI 734

Query: 717  LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA---- 772
             +YTGY+ ED++I+N+S+VDRG      Y++     S  G   D+ +   +  ++     
Sbjct: 735  ASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKG--FDQEEVFEKPTRETCQGM 792

Query: 773  -KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGSE 817
              +++  +D DGL   G  +   +       ++ +       TN R          + SE
Sbjct: 793  RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELEGTNRRYTKRDCSTFLRTSE 852

Query: 818  SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
            +  VD V V +       +   IR R  R P IGDKF+SRHGQKG C   +   DMPF+ 
Sbjct: 853  TGIVDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT- 909

Query: 878  VTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDE 937
              G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF ++V           
Sbjct: 910  CEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVN---------- 959

Query: 938  SKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRS 997
                V ++  +L   G++  G EVLY+G  G ++T +IFIGP YYQRL+HMV DK   R+
Sbjct: 960  ----VQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRA 1015

Query: 998  TGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCG 1057
             G +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +RL   SD +   VC+LCG
Sbjct: 1016 RGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCG 1075

Query: 1058 SVLTAT 1063
             +  A 
Sbjct: 1076 IMAIAN 1081


>gi|195392246|ref|XP_002054770.1| RNA polymerase II 140kD subunit [Drosophila virilis]
 gi|194152856|gb|EDW68290.1| RNA polymerase II 140kD subunit [Drosophila virilis]
          Length = 1176

 Score =  369 bits (948), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 324/1162 (27%), Positives = 513/1162 (44%), Gaps = 178/1162 (15%)

Query: 34   MFDHCRQAKISYTGKLMADV-EFQYLDAGSPV--VRERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+ + + ++   PV    ++   G+ P+ML++  C L     
Sbjct: 110  MPNEARLRNLTYSAPLYVDITKTKNVEGMDPVETQHQKTFIGKIPIMLRSTYCLLSQLTD 169

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  Y  K  +  
Sbjct: 170  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGK--YAFKTEIRS 224

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  +  GS  +     G+  +         +P+ IV +AL    D +
Sbjct: 225  CLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 284

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAE---VQDLSLTTRLQCLQHIGEHFQP 257
            I  H+   +D+           P + E VK  L E   VQ+ ++      L  IG   + 
Sbjct: 285  ILEHIIYDFDD-----------PEMMEMVKPSLDEAFVVQEQNVA-----LNFIGA--RG 326

Query: 258  VIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNP 313
               G+  +     A+ +++  +  H+  ++     K   L +M+ +L          D+ 
Sbjct: 327  ARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDR 386

Query: 314  DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKN 373
            D   N+ + L G L+    +   ++ +++ +   Q  I+  GK F      N++  ++ N
Sbjct: 387  DHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDR-GKDF------NLELAIKTN 439

Query: 374  PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
                I   +   L TG    Q     Q RAG +    RL F   +S  R V+      G 
Sbjct: 440  I---ITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG- 494

Query: 434  RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
            +    R+L    WG LCP  TP+G   GL+ ++     ++                + IL
Sbjct: 495  KLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPIL 543

Query: 494  RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VS 547
              L    M  +L ++  S       + ++G  VG+    + E+++A LR+L+      VS
Sbjct: 544  EFLEEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVS 600

Query: 548  AASVIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------------RNISLPSE 593
              S+I D  D E+               ++T   +  RP+             ++ +  E
Sbjct: 601  EVSMIRDIRDREI--------------RIYTDAGRICRPLLIVENGTLLLKKTHVEMLKE 646

Query: 594  ESQN------------IELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGML 638
               N            +E I   E+   M    P      +  A+  T  H EIHP  +L
Sbjct: 647  RDYNNYSWQVLVASGVVEYIDTLEEETVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMIL 706

Query: 639  SVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTY 698
             V A++ P+ DHNQSPRN YQ  M KQ MG  +     R D   + L  P  P+V T + 
Sbjct: 707  GVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSM 766

Query: 699  TKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-------ETID 751
                  E P G N+IVA+L YTGY+ ED++ILN S+V+RG      Y++          D
Sbjct: 767  EYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDAENKRVGD 826

Query: 752  LSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGL-----------PYVGQMIHPGEPYCSI 800
              ++  K  RG     RN     L    D DG+             +G+ I   E    +
Sbjct: 827  QEENFEKPHRGTCQGMRNAHYDKL----DDDGIIAPGIRVSGDDVVIGKTITLPENDDEL 882

Query: 801  YDKTTNSWRTNSR---KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSR 857
               T    + ++    + SE+  VD V + + NS+   +   IR R  R P IGDKF+SR
Sbjct: 883  DSNTKRFAKRDASTFLRNSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASR 940

Query: 858  HGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFM 917
            HGQKG C   +   DMPF+   G+ PD+IINPHA PSRMTI  L+E +  K GS  G+  
Sbjct: 941  HGQKGTCGIQYRQEDMPFT-CEGLAPDIIINPHAIPSRMTIGHLIECLQGKLGSNKGEIG 999

Query: 918  DATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFI 977
            DATPF ++V               V ++   L+  G++  G EV+Y+G  G ++  ++F+
Sbjct: 1000 DATPFNDAVN--------------VQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFL 1045

Query: 978  GPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLL 1037
            GP YYQRL+HMV DK   R+ G +  + RQP++GR R GG+RFGEMERD  ++HGAA  L
Sbjct: 1046 GPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFL 1105

Query: 1038 HDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKG 1097
             +RL   SD +   +C+ CG +  A   +                      C  C+    
Sbjct: 1106 RERLFEVSDPYRVHICNFCGLIAIANLRN------------------NTFECKGCKNKTQ 1147

Query: 1098 METVAMPYVFRYLAAELAAMNI 1119
            +  V +PY  + L  EL +MNI
Sbjct: 1148 ISQVRLPYAAKLLFQELMSMNI 1169


>gi|328777078|ref|XP_003249277.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB2 [Apis mellifera]
          Length = 1154

 Score =  369 bits (948), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 318/1139 (27%), Positives = 503/1139 (44%), Gaps = 153/1139 (13%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   +    ++   G+ P+ML+++ C L G   
Sbjct: 109  MPNEARLRNLTYSAPLYVDITKTIVKDGEDPIETQHQKTFIGKIPIMLRSKYCLLAGLSD 168

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  Y  K+ +  
Sbjct: 169  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKYAY--KSEIRS 223

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  +      +     G+  +         +P+ IV +AL    D +
Sbjct: 224  CLEHSSRPTSTLWINMMAKSGASIKKSAIGQRIIAIIPYIKQEIPIMIVFRALGFVADRD 283

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEH-FQPVI 259
            I  H+   +D+           P + E VK  L E     +  +   L  IG    +P  
Sbjct: 284  ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGTRGARP-- 328

Query: 260  DGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQ 319
             G+  E     A  +++  +  H+   +       + L+ +                 N+
Sbjct: 329  -GVTKEKRIKYAREILQKEMLPHVGIRDFCETKKAYFLEFI-----------------NK 370

Query: 320  EILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIG 379
             + L G L+    +   ++ L K  +L   +  + GK F+   LA IK       +K I 
Sbjct: 371  RLDLAGPLLAFXFRGLFKN-LMKEVRLYAQKFIDRGKDFNL-ELA-IK-------TKIIT 420

Query: 380  TSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVR 439
              +   L TG    Q     Q RAG +    RL F   +S  R V+      G +    R
Sbjct: 421  DGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLAKPR 478

Query: 440  KLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGV 499
            +L    WG LCP  TP+G   GL+ ++     ++                + IL  L   
Sbjct: 479  QLHNTLWGMLCPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFLEEW 527

Query: 500  GMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAASVIP 553
             M  +L ++  S       + ++G  VG+    + ++++A LR+L+      VS  S+I 
Sbjct: 528  SM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPDQLMATLRKLRRQMDIIVSEVSMIR 584

Query: 554  DDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN----IELIGP------ 603
            D  +      +  G      L       +   R+I +  E   N     EL+G       
Sbjct: 585  DIRDREIRIYTDAGRISRPLLIVEGQNLLLKKRHIDMLKERDYNNDGWQELVGSGVVEYI 644

Query: 604  ---FEQVFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQSPRNMY 658
                E+  M    P+     +  A+  T  H EIHP  +L V A++ P+ DHNQSPRN Y
Sbjct: 645  DTLEEETVMIAMSPEDLRQEKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTY 704

Query: 659  QCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLA 718
            Q  M KQ MG  +     R D   + L  P  P+V T +       E P G N+IVA+L 
Sbjct: 705  QSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILC 764

Query: 719  YTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD-GNKVDRGQKLFRRNKDA--KSL 775
            YTGY+ ED++ILN S+V+RG      Y++     S   G++ ++ +K  R+       ++
Sbjct: 765  YTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKRIGDQEEQFEKPTRQTCQGMRNAI 824

Query: 776  HSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSR----KGSESVF 820
            +  +D DG+             +G+ I   E    + D TT  +         + SE+  
Sbjct: 825  YDKLDDDGIIAPGIRVSGDDVVIGKTITLPEADDEL-DSTTKRFTKRDASTFLRNSETGI 883

Query: 821  VDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTG 880
            VD V + + NS+   +   IR R  R P IGDKF+SRHGQKG C   +   DMPFS   G
Sbjct: 884  VDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFS-CEG 940

Query: 881  MRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKS 940
            + PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF ++V              
Sbjct: 941  LTPDIIINPHAIPSRMTIGHLIECIQGKVSANKGEIGDATPFNDAVN------------- 987

Query: 941  LVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGT 1000
             V ++  +L+  G+   G EV+Y+G  G ++  ++F+GP YYQRL+HMV DK   R+ G 
Sbjct: 988  -VQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGP 1046

Query: 1001 MDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVL 1060
            +  + RQP++GR R GG+RFGEMERD  ++HGAA  L +RL   SD +   +C+ CG + 
Sbjct: 1047 VQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHICNFCGLIA 1106

Query: 1061 TATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
             A   +                      C  C+    +  + +PY  + L  EL AMNI
Sbjct: 1107 IANLRN------------------NTFECKGCKNKTQISQIRLPYAAKLLFQELMAMNI 1147


>gi|440801047|gb|ELR22072.1| DNAdirected RNA polymerase, beta subunit [Acanthamoeba castellanii
            str. Neff]
          Length = 1196

 Score =  369 bits (948), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 306/1111 (27%), Positives = 497/1111 (44%), Gaps = 152/1111 (13%)

Query: 68   RFNFGQFPVMLKTRRCHLQGADSQK-LVSLKEEAAEMGGYFILNGLERVFRSVILPKQNY 126
            R   G+ P+ML++  C L GA S K L  L E   + GGYF++NG E+V    ++ ++  
Sbjct: 172  RVFIGKVPIMLRSNYCMLAGAPSDKDLTELGECPYDQGGYFVINGSEKV----LIAQEKM 227

Query: 127  PMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGK-EYL-- 183
              + V    +     Y   A +  C+       +     ++  S   G  L+    Y+  
Sbjct: 228  SHNHVYVFKKQAPSKYAYVAEIRSCLETGSRPTSTMYVKMMQRSGSKGQTLKATIPYIRQ 287

Query: 184  -LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLT 242
             +P+ IV +AL    D EI   +   +D K   E   +  P + E   I     QD ++ 
Sbjct: 288  DIPIIIVFRALGFVADREILELIVYDFDNKDMME---MLRPSLEEAFVI-----QDQAV- 338

Query: 243  TRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQ 298
                 L +IG+  +    G   E     A+ +++  +  H+  +      K     +++ 
Sbjct: 339  ----ALDYIGK--RGTTTGATREKRIKYAKEILQKEMLPHVGISQYCETKKAYFFGYIIH 392

Query: 299  KLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKF 358
            +L          D+ D   N+ + L G L+    ++  +   +  +  +Q  + ++GK+F
Sbjct: 393  RLLLAAQGKRPLDDRDHYGNKRLDLAGPLLGTLFRQLFKKLNKDVRGYLQKCV-DSGKEF 451

Query: 359  DFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFI 418
            +         +M    SK I   ++  L TG   +   +    ++G +    RL F   +
Sbjct: 452  N---------LMMAVKSKTITNGLKYSLATGNWTSTRSVG--AKSGVSQVLNRLTFASTL 500

Query: 419  SFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDS 478
            S  R ++      G +    R+L    WG +CP  TP+G+ CGL+ ++     + S   +
Sbjct: 501  SHLRRLNTPIGREG-KLAKPRQLHNTHWGMICPAETPEGQACGLVKNLALMAYI-SVGSA 558

Query: 479  RGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV--IPSSEIEK 536
               I +F +  ++            +L ++  S  PA   + ++G  VG+   P   ++ 
Sbjct: 559  SAPILEFLEEWST-----------ENLEEISPSNIPAATKIFVNGAWVGIHRQPDHLVQT 607

Query: 537  VVAHLRRLKVSA-ASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP----------- 584
            + +  R + VSA  SV+ D  E              L L+T   +  RP           
Sbjct: 608  LRSLRRCVDVSAEVSVVRDIRE------------QELRLYTDAGRCCRPLFIVDKQRLLL 655

Query: 585  ----VRNIS-LPSEESQN------------IELIGPFEQ----VFMEIRCPDGGDGGRRN 623
                +R+I  L  +ES +            +E I   E+    + M I            
Sbjct: 656  KKSDIRDIQKLQQDESLSEKGWSHLVSQGFVEYIDCEEEETVMIAMTIDDLKKSRSEEAY 715

Query: 624  AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
            ++  TH EIHP+ +L + A++ P+ DHNQSPRN YQ  M KQ MG      + R D   +
Sbjct: 716  SYTYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVYTTNYQLRMDTLAH 775

Query: 684  HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
             L  PQ P++ T++       + P+G N I+A+  Y+GY+ ED++++N+SSVDRG     
Sbjct: 776  VLYYPQKPLITTHSMEHLHFRKLPSGQNGIIAIACYSGYNQEDSLVMNQSSVDRGFFRSV 835

Query: 744  IYQTETIDLSDDGNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQ-------MIHPG 794
             Y++        G   +  +K  R +        +  I+ DGL   G        +I   
Sbjct: 836  FYRSYVDSEKHMGQYDEEFEKPIREDTMGMRHGSYEKIEDDGLIAPGTRVSGDDIIIGKT 895

Query: 795  EPYCSIYDKTTNSWRTNSR------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNP 848
             P  S  ++ T + R + +      + SE+  +D V +   NS    +   +R R  R P
Sbjct: 896  TP-VSPNEEDTRAQRFSKKDSSISVRSSETGIIDKVMLST-NSDGY-KFCKVRVRSVRTP 952

Query: 849  IIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
             IGDKFSSRHGQKG    ++   DMPF+ + G+ PD+I+NPHA PSRMTI  L+E +  K
Sbjct: 953  QIGDKFSSRHGQKGTVGIMYRQEDMPFN-IEGITPDIIVNPHAIPSRMTIGQLIECLMGK 1011

Query: 909  GGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYG 968
              +  G+  DATPF N+                V+ + ++L   G+   G EV+Y+G  G
Sbjct: 1012 VSATTGEEGDATPFTNTT---------------VESISDLLHGVGYQRRGNEVMYNGHTG 1056

Query: 969  TELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSL 1028
             +L  + FIGP YYQRL+HMV DK   R+ G +  +TRQP++GR R GG+RFGEMERD +
Sbjct: 1057 RKLEAQFFIGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCM 1116

Query: 1029 LAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVT 1088
            ++HGAA  L +RL+  SD +   VC LCG +  A                          
Sbjct: 1117 ISHGAAQFLKERLYDQSDAYRVHVCDLCGMIAIANL------------------RKNTFE 1158

Query: 1089 CHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
            C +C+    +  V +PY  + L  EL +M I
Sbjct: 1159 CRSCRNKTQISQVHIPYACKLLFQELMSMCI 1189


>gi|159117422|ref|XP_001708931.1| DNA-directed RNA polymerase subunit B [Giardia lamblia ATCC 50803]
 gi|157437045|gb|EDO81257.1| DNA-directed RNA polymerase subunit B [Giardia lamblia ATCC 50803]
          Length = 1235

 Score =  369 bits (948), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 253/813 (31%), Positives = 404/813 (49%), Gaps = 57/813 (7%)

Query: 39  RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
           R+ + +Y G L   ++         VV    N G  PVM+ ++ C L G   ++ + L+E
Sbjct: 109 RETRANYCGPLHVTLKVSDGPMSKTVV---INAGDVPVMVGSKLCLLHGKTREERIRLRE 165

Query: 99  EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
           +  + GGYFI NG ++V R  +    N P++  +         +    V  + VR+D   
Sbjct: 166 DERDAGGYFISNGQDKVVRLYLDCLSNTPLAFTKYRSLSTISEFAPAGVHYKGVREDGHV 225

Query: 159 VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKG 218
            +  +    +  + + F + G+   +P+ +VL+ALV T D EI++ +       + KE G
Sbjct: 226 YSTVIQARKDNFLSVKFTIDGRYIYVPLILVLRALVSTTDKEIYSTICTICASAHPKEDG 285

Query: 219 AVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAV--AETVIR 276
                 VS RV+ +L +     + +   C Q +G  F+ ++  L       V   + +  
Sbjct: 286 -----YVSLRVEAMLRDFHKYRIFSHKACKQLLGGKFRMILSLLDRYDLTDVDCCDLLFE 340

Query: 277 DYIFVHL--NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKE 334
            Y+ +++   D   KFN++  M +K   L       D+PD L +QE L PG     + K 
Sbjct: 341 QYLLINIPKEDTRAKFNMMCLMARKCLLLFGSFIKPDSPDLLSSQEALTPG----AFFKA 396

Query: 335 KLEDWLRKGKKLIQDEIENNGK--KFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLA 392
           ++   L K  +L+     + G    ++  N      +      + + + + ++   G + 
Sbjct: 397 EVTSTLIKIMRLVSRNATSTGAIGSYELSNSWISHYIASPKLWRPLSSGLRSLAGPGVMR 456

Query: 393 TQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPV 452
              G D    +G +V A+R+N++RF++ FR ++RG +FA  + TS+RKL PES+GF C V
Sbjct: 457 AYKGHDYSNMSGLSVLADRINYVRFLAHFRCINRGNAFATHKITSIRKLYPESYGFQCAV 516

Query: 453 HTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSG 512
           HTPDG PCG+L H+     V S   +   I        ++  +L   G+ PSL  +    
Sbjct: 517 HTPDGAPCGILTHLCYKATVLSSTPTTDQI-------ANLFILLAQFGLSPSLSDIYS-- 567

Query: 513 PPAVLSVLLDGRVVGVIPSSEIE-KVVAHLRRLKVSAASVIPDDLEVGYVPL-SLGGAYP 570
               L V+L+G ++G + ++E   ++VA +R  KV   S+I    EV ++   +    +P
Sbjct: 568 ----LCVVLNGTILGYLDTNERAIQLVACIRAAKVK--SIIFPYTEVVFIEKGNKDHLFP 621

Query: 571 GLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHE 630
           G+Y+ TS  +F RPV +++     + + E I P EQ+F++I     GD  R      TH+
Sbjct: 622 GIYMNTSMGRFYRPVHSLT-----NNSPEYITPLEQIFLQIAI--YGDDVRLGV--TTHQ 672

Query: 631 EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQT 690
           EI PT +LS++  L P+SDHNQSPRNMY+CQM KQTMG   + L ++ D K Y L TPQ 
Sbjct: 673 EITPTSLLSILGLLVPFSDHNQSPRNMYECQMLKQTMGIPCRNLAYKYDTKSYLLTTPQK 732

Query: 691 PIVRTNTYTKY-GIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTET 749
           P+VR        G D +PTGTN +VAV AYT YDMEDA ++NK+S++RG+ HG +Y    
Sbjct: 733 PLVRNAIIHDIGGFDTHPTGTNLVVAVSAYTSYDMEDAALINKASLERGLFHGTVYSVHD 792

Query: 750 IDLSDDG-----NKVDRGQKLFRRNKDAKSLH------SVIDSDGLPYVGQMIHPGEPYC 798
           ID  DD        V       +R+ D    H      + +D DGLP VG  +  G  + 
Sbjct: 793 IDCYDDKLMRYMRTVATAVPYLKRSPDYIVTHMDENYDTELDEDGLPPVGAYLSHGSVFY 852

Query: 799 SIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNS 831
             YD T   + T      E  FV+ V V  K++
Sbjct: 853 QTYDPTKQCYSTKLYH-HEPGFVEKVIVIHKSA 884



 Score =  256 bits (655), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 147/337 (43%), Positives = 199/337 (59%), Gaps = 35/337 (10%)

Query: 792  HPGEPYCSIYDKTTNSWRTNSRKGS--ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPI 849
             PG    S  D  T + R+++ K     S  +   A    +S +  Q+  I  RH R P+
Sbjct: 927  QPGSGSESNEDNQTATPRSHASKAERKSSRQLQTRARTESSSLHFIQRVRIVIRHDRTPV 986

Query: 850  IGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKG 909
            +GDK +SRHGQKG+    W   DMPF+  +G+ PDLIINPHAFPSRMT+ ML+ES+A+K 
Sbjct: 987  VGDKVASRHGQKGIMGIRWRQTDMPFTS-SGIVPDLIINPHAFPSRMTVGMLIESLASKI 1045

Query: 910  GSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGE-MLRTCGFNYHGVEVLYSGVYG 968
            G  +  F+D++PF  S          DE ++ +D  GE +L+T  FN +G EV+YS + G
Sbjct: 1046 GVHYADFVDSSPFQWS----------DERRA-IDVFGEQLLKTGQFNRYGSEVMYSAITG 1094

Query: 969  TELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSL 1028
              +  +IFIG VYYQRLRHMVSDK+QVR+ G  D+IT+QPIKGRKRGGG+RFGEMERD+L
Sbjct: 1095 DPMPADIFIGVVYYQRLRHMVSDKYQVRAEGPSDKITKQPIKGRKRGGGLRFGEMERDAL 1154

Query: 1029 LAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVT 1088
            LAHGA   L  RL T SD     VC+ CGS+L             ++GG           
Sbjct: 1155 LAHGAMASLRGRLCTESDATEHVVCAACGSLLGM-----------QLGG---------SV 1194

Query: 1089 CHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
            C  C+ +     + +P V   LA +LAAM +++   +
Sbjct: 1195 CRECKATGHGRLIQIPMVLLVLANDLAAMGVRMRFNV 1231


>gi|118576748|ref|YP_876491.1| DNA-directed RNA polymerase, beta subunit/140 kD subunit [Cenarchaeum
            symbiosum A]
 gi|118195269|gb|ABK78187.1| DNA-directed RNA polymerase, beta subunit/140 kD subunit [Cenarchaeum
            symbiosum A]
          Length = 1115

 Score =  369 bits (947), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 337/1199 (28%), Positives = 522/1199 (43%), Gaps = 208/1199 (17%)

Query: 15   LVRHHIESFDYMLDEGLSEMFDHCRQAKI------------------------------- 43
            + R H+ SFD  L+ GL  + D   Q +I                               
Sbjct: 21   IARQHLNSFDEFLERGLQSIIDEQGQIEIENAEYPYKIQLGKVKLQKPRMMELDGSITYI 80

Query: 44   ----------SYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKL 93
                      SY+  +M  +E   ++ G  +  +  + G  P M+K+  C L     QKL
Sbjct: 81   TPAEGRLRNVSYSAPVM--MEASVVEDGKTLESKFVHIGDIPTMIKSSACVLHNLPDQKL 138

Query: 94   VSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVR 153
            +   E+  + GGYFI+NG ERV   V L   +Y   +V       +E      V    V 
Sbjct: 139  IEQGEDPNDPGGYFIINGSERVV--VGLEDLSYNKIIVD------KETVGGNPVYKAKVY 190

Query: 154  KDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKY 213
                    KL  ++     +   + G    +PV  ++KAL   +D EI +  +   D + 
Sbjct: 191  SSIVGYRAKLELIMKNDGLIVVRIPGSPVDIPVVTLMKALGLESDREIASSASLNDDIQN 250

Query: 214  KKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAET 273
            + E    GS   +  VK            T    + +I +   P   G+  E     AET
Sbjct: 251  ELE----GSFEKAGEVK------------TSKDAIVYISKRIAP---GMLEEFQIKRAET 291

Query: 274  VIRDYIFVHL----NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
            ++   +  HL     +  +K   L     KL  L      +D+ D   N+ I   G ++ 
Sbjct: 292  LLDWSLLPHLGKHPENRKEKAQFLGEATCKLLELKLVWIPADDKDHYGNKVIKFAGQMLA 351

Query: 330  IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
               +    + +R  K     ++E +G+K     +A                +I   + T 
Sbjct: 352  DLFRTAFRNLVRDMKY----QLERSGQKRGIHAVA---------------AAIRPGIVTD 392

Query: 390  RL--ATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT---SVRKLLPE 444
            +L  A  TG   + R G T   +R N+L  IS  R V    S    RT      R L   
Sbjct: 393  KLNNAIATGNWGRGRVGVTQLLDRTNYLSTISHLRRVQSPLS----RTQPNFEARDLHAT 448

Query: 445  SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
             +G +CP  TP+G  CGL+ ++  +  ++ +  S+            I   L  +G +  
Sbjct: 449  HFGRICPSETPEGSNCGLVKNLALSAIISVHVPSQ-----------EITEKLFDMGTV-H 496

Query: 505  LPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS 564
                 +        + +DGR++G         +   LR L+ S  S I   + + +   +
Sbjct: 497  FTDAKEDARATGTRIFVDGRLIGYYKDGG--GLADSLRDLRRS--SKIHPHVSISFNRPA 552

Query: 565  LGGAYPGLYLFTSPPKFVRPVRNIS----LPSEE----------SQN-------IELIGP 603
              GA   LY+  S  + +RP+  I     L +++          S N       IELI  
Sbjct: 553  EDGATRRLYVNCSAGRVLRPMIIIKDGKPLLTQDLLDKISSKLLSWNDLLRMGVIELIDA 612

Query: 604  FEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMA 663
             E+    +   +      + A   TH EI P+ +L   A++ PY +HNQSPRN Y+  MA
Sbjct: 613  NEEENCYVTLDE------KEAKGHTHLEIFPSAILGAGASIIPYPEHNQSPRNTYESAMA 666

Query: 664  KQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYD 723
            KQ++GFS   +      + + +  PQTPIV T      G+++ P G N +VAVL + GY+
Sbjct: 667  KQSLGFSTPMMNTSTYVRQHFMLYPQTPIVNTRAMGLLGLEDRPAGQNCVVAVLPFDGYN 726

Query: 724  MEDAMILNKSSVDRGMCHG---QIYQTET------------IDLSDDGNKVDRGQKLFRR 768
            +EDA++L+KSSVDRG+      +IY  E             I  ++D  +  +G+K +R 
Sbjct: 727  IEDAIVLSKSSVDRGLARTFFYRIYDAEAKQYPGGMRDNFEIPGAEDNIRGYKGEKSYRL 786

Query: 769  NKD---AKSLHSVIDSDGLPYVGQMIHPG--EPYCSIYDKTTNSWRTNSRKG---SESVF 820
             +D     S  +V+  D L  +G+   P   E Y     + +  +R ++  G   SE+  
Sbjct: 787  LEDDGVIASESTVLGGDIL--IGKTSPPRFMEEYKEF--EPSGPYRRDTSIGVRPSETGV 842

Query: 821  VDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTG 880
            VD V +   N      K  IR R  R P IGDKF++RHGQKGV   L  + D+P++   G
Sbjct: 843  VDTVVMTQSNEGGKMYK--IRVRDMRVPEIGDKFAARHGQKGVLGILAKNEDLPYTA-EG 899

Query: 881  MRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKS 940
            + PD++INPHAFPSRMT+ M +ES+  K  +L G   D + F                  
Sbjct: 900  VTPDVLINPHAFPSRMTVGMFMESITGKAAALRGTQFDGSAFVGEK-------------- 945

Query: 941  LVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGT 1000
             ++E+ E++ T GF Y G E++Y G  G     E+FIG VYYQ+L HMV+DK   R+ G 
Sbjct: 946  -MEEVREVMDTAGFKYSGKEIMYDGRTGKAFPVEVFIGVVYYQKLHHMVADKIHARARGQ 1004

Query: 1001 MDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVL 1060
            +  +T+QP +GR RGGG+RFGEMERD L+A+GA+ +L DRL   SD     VC  CG V 
Sbjct: 1005 VQMLTKQPTEGRARGGGLRFGEMERDCLIAYGASMILKDRLLDESDKSDIYVCERCGLVA 1064

Query: 1061 TATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
                 H  K+              +K  C  C     + +V++ Y F+ L  E+ ++N+
Sbjct: 1065 ----YHDVKQ--------------RKYVCRVCGDKAKVSSVSVAYAFKLLLQEMQSLNV 1105


>gi|268563827|ref|XP_002647022.1| Hypothetical protein CBG24045 [Caenorhabditis briggsae]
          Length = 1078

 Score =  369 bits (947), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 319/1170 (27%), Positives = 523/1170 (44%), Gaps = 192/1170 (16%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
             CR   ++Y+  +  D+E  Y      V ++    G+ P+ML++ +C L+    ++L  +
Sbjct: 17   ECRLRDMTYSAPISVDIE--YTRGHQRVYKKDLVIGRMPIMLRSSKCILRDLAEEELARV 74

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
            +E   + GGYF++ G E+V    IL ++    + +    R+  +    + +     RK +
Sbjct: 75   QECPHDPGGYFVVKGSEKV----ILIQEQLSKNRIMVG-RNSSKELQCEVLSSTSERKSK 129

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
            + VT+K       SVR           +PV I+ KA+   +D +I +  T  ++EKY   
Sbjct: 130  TYVTVKKGKY---SVRHNQLTDD----VPVSIIFKAMGVESDFDIVS--TIGHEEKY--- 177

Query: 217  KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHI-----GEHFQPV--IDGLQSESYYA 269
                    VS   +  L E  +  + T+ Q L ++        F P   + G       A
Sbjct: 178  --------VSAFAQT-LEECINAGVYTQQQALAYVTSKVKARKFTPFGSLPGTSVSVLTA 228

Query: 270  VAETVIRDYI----FVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNP----DSLQNQEI 321
              E    D++      H+   +  F +    L ++   +  T + +N     D   N+ +
Sbjct: 229  PKEHEAVDFLSNSMITHIACPDGNFKMKAIYLGQMTRRLIQTEMGENELDDRDFYGNKRL 288

Query: 322  LLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTS 381
             L G L+ +  ++  + +  + K+     I +N          +I K M ++    I  +
Sbjct: 289  ELAGSLLALLFEDVFKRFNSELKR-----IADNALMKTMAAPLDIVKHMRQD---MITNT 340

Query: 382  IETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRK 440
            I   + TG    +      +R G T    RL+++  +     ++  ++F   R  S  R 
Sbjct: 341  IVNAMSTGNWIIKRFR--MERLGVTQVLSRLSYISALGMMTRIN--STFEKTRKVSGPRS 396

Query: 441  LLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVG 500
            L P  WG LCP  TP+GE CGL+ ++     + +  D +            +LR+L+  G
Sbjct: 397  LQPSQWGMLCPSDTPEGEACGLVKNLALISHITTDSDEK-----------PVLRLLLNSG 445

Query: 501  MIPSLPKLVKS--GPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEV 558
             +  L  +  S    P    + L+G ++G   + + E+VV  +R L+ S        L  
Sbjct: 446  -VEDLHNVHFSHVNKPENTLIFLNGVLIGT--AVDPERVVKAVRDLRRSG-------LLS 495

Query: 559  GYVPLSLGGAYPGLYLFTSPPKFVRP---VRNISLPSEESQNIELIGPFEQVFMEI---- 611
             +V +S       +++ +   +  RP   VR+   P     +++ +   +++F +     
Sbjct: 496  EFVSVSRSMTNRSVFISSDGGRLCRPYIIVRH-GKPMLTETHVQELKEGKRIFEDFVDDG 554

Query: 612  --------RCPDGGDGGRRNAFPA--THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQ 661
                       D       N   A  TH EI P  +L V A L PY  HNQSPRN YQC 
Sbjct: 555  IVEYLDVNEMNDALIAVYENEIGAETTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCA 614

Query: 662  MAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTG 721
            M KQ MG      + R D  +Y L  PQ P+V++ T      ++ P G N I+AV++Y+G
Sbjct: 615  MGKQAMGTIAYNQQKRIDSIMYLLCYPQRPLVKSKTIELTNFEKLPAGANGIIAVMSYSG 674

Query: 722  YDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DRGQKLFRRNKDAKSL----- 775
            YD+EDA++LNK+S+DRG     +Y+          N+  DR   L     D+ +L     
Sbjct: 675  YDIEDALVLNKASLDRGYGRCLVYKHVKGTAKKYPNQTYDR---LLGPAVDSVTLKPIFK 731

Query: 776  HSVIDSDGLPYVGQMIHPGEPYCS--------------------------IYDKTTNSWR 809
            H  +D +G+ + G  I P +   +                           Y   + +++
Sbjct: 732  HKNLDQEGIVFTGARILPKQTIINKYMPVVSAESGSAASANTIGIAGRDVAYKDVSITYK 791

Query: 810  TNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWP 869
            T +   +E V + Y       +++      +  R TR P +GDKFSSRHGQKGVC  +  
Sbjct: 792  TPTPSYAERVLLTY-------NEDEAHLFKVLLRQTRRPELGDKFSSRHGQKGVCGLIAQ 844

Query: 870  DIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKT 929
              DMPF+ + GM PD+I+NPH +PSRMT+  L+E ++ K G ++G +   T F       
Sbjct: 845  QEDMPFNDL-GMVPDMIMNPHGYPSRMTVGKLMELLSGKAGVMNGTYHYGTAF------- 896

Query: 930  NGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMV 989
                G D+ K + +EL       G+NY G ++L SG+ G  L+  I+ GP+YYQ+L+HMV
Sbjct: 897  ----GGDQVKDVCEELAAR----GYNYMGKDMLTSGITGQPLSAYIYFGPIYYQKLKHMV 948

Query: 990  SDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSD-YH 1048
             DK   R+ G    +TRQP +GR R GG+R GEMERD L+A+GA+ LL +RL   SD + 
Sbjct: 949  LDKMHARARGPRAALTRQPTEGRSREGGLRLGEMERDCLIAYGASMLLIERLMVSSDEFK 1008

Query: 1049 V------------ADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSK 1096
            V             DVC+ CG + +  +                        C  C++SK
Sbjct: 1009 VLFRSFVPLIPIEVDVCTGCGVIGSKGW------------------------CQKCRSSK 1044

Query: 1097 GMETVAMPYVFRYLAAELAAMNIKITLQLG 1126
             M  + +PY  + L  EL +MNI   L L 
Sbjct: 1045 SMANIKIPYACKLLFQELQSMNIVPRLDLA 1074


>gi|198423468|ref|XP_002121670.1| PREDICTED: similar to polymerase (RNA) III (DNA directed) polypeptide
            B [Ciona intestinalis]
          Length = 1141

 Score =  369 bits (947), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 317/1141 (27%), Positives = 510/1141 (44%), Gaps = 160/1141 (14%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR   ++Y+  +  D+E  Y      ++R+    G+ P+ML++  C L G +  +L  + 
Sbjct: 103  CRLRDMTYSASITVDIE--YTRGQQRIIRKALPIGRMPIMLRSSNCVLTGKNGVELAKMN 160

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            E   + GGYF+  G+E+V   +++ +Q   MS  R      R+G+   +V          
Sbjct: 161  ECPYDPGGYFVCKGVEKV---ILIQEQ---MSKNRMIVERDRKGFCSCSV---------H 205

Query: 158  SVTLKLYYLLNGSVRLG-FWLQGKEYL--LPVGIVLKALVDTNDLEIFNHLTCCYDEKYK 214
            S T +    +N   + G F+LQ       +P+ ++ KA+   ++  I   +        +
Sbjct: 206  SSTHEKKTRVNVLQKKGHFYLQQNALNEDMPICVIFKAMGVESEQSIMQLIGT------E 259

Query: 215  KEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHF--QPVIDGLQSESYYAVAE 272
            +   ++ SP         L +   L + T+LQ  ++I      Q  + G   +S      
Sbjct: 260  ENVMSMFSP--------SLEDCHKLEVFTQLQASKYISGKIRRQRPVWGAARQSKTDETR 311

Query: 273  TVIRDYIFVHL-----NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
              +   +  H+     N +     L + + + + + + +  V D  D   N+ + L G L
Sbjct: 312  DWLNTTLLAHIPVTDWNYHAKAVYLALMIRRIILTQLGYLEVDDR-DYYGNKRMELAGGL 370

Query: 328  ITIYLKEKLEDWLRKGKKLIQDEI-ENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETML 386
            I++  ++  + +  + KK+    I +    +FD         V+       I TS+   +
Sbjct: 371  ISLLFEDLFKRFNSELKKIADLTIPKPRAAQFD---------VVRHMRQDLITTSLVIAI 421

Query: 387  KTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPES 445
             +G    +      +R G T    RL+++  +     +   + F   R  S  R L P  
Sbjct: 422  SSGNWIVKRFK--MERKGVTQVLTRLSYISALGMMTRI--ASQFEKTRKVSGPRSLQPSQ 477

Query: 446  WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
            WG LCP  TP+GE CGL+ ++     +    +     R    +    + +L G  +   L
Sbjct: 478  WGMLCPSDTPEGEACGLVKNLALMTHITVDVEEEPTARLLFNLGVEDVYMLSGEEIHSQL 537

Query: 506  PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
              +V           L+G V+GV+   +   +V  LR ++      + D     ++ +S 
Sbjct: 538  SYIV----------FLNGLVLGVV--RDPVHLVTTLRLMR--RHGYLND-----FISVST 578

Query: 566  GGAYPGLYLFTSPPKFVRPVRNISL--PSEESQNIELIG----PFEQVFMEIRCPDGGDG 619
              A+  +Y+ +   +  RP   +S   P   S +IE +      FE  F+     +  D 
Sbjct: 579  NRAHRTVYVSSDGGRLCRPYIIVSKGKPLVTSHHIEELKRGLRSFED-FLRSGLVEYLDV 637

Query: 620  GRRN-----------AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMG 668
               N              +TH EI P  +L V A L PY  HNQSPRN YQC M KQ MG
Sbjct: 638  SEENDCFVALDESYITHKSTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMG 697

Query: 669  FSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAM 728
                  + R D  +Y L  PQ P+V++ T      ++ P G NAI+AV++Y+GYD+EDA+
Sbjct: 698  TIGYNQQQRIDTLMYLLVYPQAPLVKSRTIELINFEKLPAGQNAIIAVMSYSGYDIEDAL 757

Query: 729  ILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR--GQKLFRRNKDAKSLHSVIDSDGLP 785
            +LN++SVDRG     +Y+ +   L    N+  D+  G  L    ++    H  +D+DG+ 
Sbjct: 758  VLNRASVDRGYGRCLVYRNQKCILKRYANQTFDKVMGPALNAETREPIWRHQGLDADGII 817

Query: 786  YVGQMIHPGEP-YCSIYDKT------------------TNSWRTN--SRKGSESVFVDYV 824
              G  +   +   C +Y                     + S++    S +G     ++ V
Sbjct: 818  MPGVKVESKQKIMCXLYXXXXXXXXXXXXXXXXXLQGPSTSYQETPISYRGPVGSTIEKV 877

Query: 825  AVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPD 884
             V   N ++   K  I  R TR P +GDKFSSRHGQKGV   +    DMPF+   G+ PD
Sbjct: 878  MVSSNNEESSLIK--ILLRQTRRPELGDKFSSRHGQKGVTGLIVQQADMPFNQ-DGICPD 934

Query: 885  LIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDE 944
            +I+NPH +PSRMT+  L+E + +K G++ GKF   T F        GD   D S+ L D 
Sbjct: 935  VIMNPHGYPSRMTVGKLMELLGSKAGAIGGKFHYGTAFG-------GDKVEDLSQVLTDN 987

Query: 945  LGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQI 1004
                    G+NY G + L SG+ G      I+ GPVYYQ+L+HMV DK   R+ G    +
Sbjct: 988  --------GYNYVGKDCLTSGITGESFEAYIYQGPVYYQKLKHMVLDKMHARARGPRAVL 1039

Query: 1005 TRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATF 1064
            TRQP +GR   GG+R GEMERD L+ +GA+ LL +RL   SD    DVC  CG +    +
Sbjct: 1040 TRQPTEGRSHDGGLRLGEMERDCLIGYGASMLLLERLMISSDQFEVDVCGKCGLLGYDGW 1099

Query: 1065 IHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQ 1124
                                    C  C++SK + T+ +PY  + L  EL +MNI   L+
Sbjct: 1100 ------------------------CQFCKSSKNVATLKIPYACKLLFQELTSMNIIPRLK 1135

Query: 1125 L 1125
            L
Sbjct: 1136 L 1136


>gi|324120672|dbj|BAJ78727.1| RNA polymerase II second largest subunit [Lucidina biplagiata]
          Length = 1175

 Score =  369 bits (946), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 315/1141 (27%), Positives = 504/1141 (44%), Gaps = 136/1141 (11%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   +    ++   G+ P+ML++  C L G   
Sbjct: 109  MPNEARLRNLTYSAPLYVDITKTIVKDGEEPIETQHQKTFIGKIPIMLRSTYCLLSGLTD 168

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L+ L E   + GGYFI+NG E+V     L  Q    +     F  +   Y  K+ +  
Sbjct: 169  RDLMELNECPLDPGGYFIINGSEKV-----LIAQEKMATNTVYVFAMKDGKYAFKSEIRS 223

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  +  G   +     G+  +         +PV +V +AL    D +
Sbjct: 224  CLEHSSRPTSTLWVNMMARGGQAIKKAAIGQRIIAILPYIKQEIPVMVVFRALGFVADRD 283

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +++           P + E VK  L E     +  +   L  IG   +    
Sbjct: 284  ILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RGARP 328

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     A  +++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 329  GVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   ++ +++ +   Q  I + GK F+  +LA IK       +K
Sbjct: 389  GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFI-DRGKDFN-LDLA-IK-------TK 438

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   +   L TG    Q     Q RAG +    RL F   +S  R V+      G +  
Sbjct: 439  LITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 496

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G   GL+ ++     ++                + IL  L
Sbjct: 497  KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  S       + ++G  VG+    + E++++ LR+L+      VS  S
Sbjct: 546  EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMSTLRKLRRQMDIIVSEVS 602

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
            +I D  +      +  G      L     + +   R+I +  E   N            +
Sbjct: 603  MIRDIRDREIRIYTDAGRICRPLLIVENGQLLLKKRHIDMLKEREYNNYGWQVLVAQGVV 662

Query: 599  ELIGPF-EQVFMEIRCPDGGDGGRRNAFPA--THEEIHPTGMLSVVANLTPYSDHNQSPR 655
            E I    E+  M    PD     +  A+    TH EIHP  +L V A++ P+ DHNQSPR
Sbjct: 663  EYIDTLEEETVMIAISPDDLRQEKDYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPR 722

Query: 656  NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
            N YQ  M KQ MG  +     R D   + L  P  P+V T +       E P G N+IVA
Sbjct: 723  NTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVA 782

Query: 716  VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVDRGQKLFRRNKDA-- 772
            +  YTGY+ ED++ILN S+V+RG      Y++ +  +    G++ ++ +K  R+      
Sbjct: 783  IACYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSECKRIGDQEEQFEKPTRQTCQGMR 842

Query: 773  KSLHSVIDSDGLPYVGQMIHPGEPYCSI----------YDKTTNSWRTNSR----KGSES 818
             +L+  +D DG+   G  +   +                D TT  +         + SE+
Sbjct: 843  NALYDKLDDDGIISPGIRVSGDDVVIGKTMTLPENDDELDGTTKKFSKRDASTFLRNSET 902

Query: 819  VFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGV 878
              VD V + + NS+   +   IR R  R P IGDKF+SRHGQKG C   +   DM F+  
Sbjct: 903  GVVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMIFT-C 959

Query: 879  TGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDES 938
             G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF ++V            
Sbjct: 960  EGITPDIIINPHAIPSRMTIGHLIECIQGKVSANKGEIGDATPFNDAVN----------- 1008

Query: 939  KSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRST 998
               V ++  +L+  G++  G EV+Y+G  G ++  +IF+GP YYQRL+HMV DK   R+ 
Sbjct: 1009 ---VQKISTLLQEYGYHLRGNEVMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHSRAR 1065

Query: 999  GTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGS 1058
            G +  + RQP++GR R GG+RFGEMERD  ++HGAA  L +RL   SD +   +C+ CG 
Sbjct: 1066 GPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHICNFCGL 1125

Query: 1059 VLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMN 1118
            +  A   +                      C  C+    +  + +PY  + L  EL +MN
Sbjct: 1126 IAIANLRN------------------NTFECKGCKNKTQISQIRLPYAAKLLFQELMSMN 1167

Query: 1119 I 1119
            I
Sbjct: 1168 I 1168


>gi|194900689|ref|XP_001979888.1| GG16840 [Drosophila erecta]
 gi|190651591|gb|EDV48846.1| GG16840 [Drosophila erecta]
          Length = 1176

 Score =  369 bits (946), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 322/1151 (27%), Positives = 510/1151 (44%), Gaps = 156/1151 (13%)

Query: 34   MFDHCRQAKISYTGKLMADV-EFQYLDAGSPV--VRERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+ + + ++   PV    ++   G+ P+ML++  C L     
Sbjct: 110  MPNEARLRNLTYSAPLYVDITKTKNVEGLDPVETQHQKTFIGKIPIMLRSTYCLLSQLTD 169

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  Y  K  +  
Sbjct: 170  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGK--YAFKTEIRS 224

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  +  GS  +     G+  +         +P+ IV +AL    D +
Sbjct: 225  CLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 284

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAE---VQDLSLTTRLQCLQHIGEHFQP 257
            I  H+   +D+           P + E VK  L E   VQ+ ++      L  IG   + 
Sbjct: 285  ILEHIIYDFDD-----------PEMMEMVKPSLDEAFVVQEQNVA-----LNFIGA--RG 326

Query: 258  VIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNP 313
               G+  +     A+ +++  +  H+  ++     K   L +M+ +L          D+ 
Sbjct: 327  ARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDR 386

Query: 314  DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKN 373
            D   N+ + L G L+    +   ++ +++ +   Q  I+  GK F      N++  ++ N
Sbjct: 387  DHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDR-GKDF------NLELAIKTN 439

Query: 374  PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
                I   +   L TG    Q     Q RAG +    RL F   +S  R V+      G 
Sbjct: 440  I---ITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG- 494

Query: 434  RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
            +    R+L    WG LCP  TP+G   GL+ ++     ++                + IL
Sbjct: 495  KLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPIL 543

Query: 494  RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VS 547
              L    M  +L ++  S       + ++G  VG+    + E+++A LR+L+      VS
Sbjct: 544  EFLEEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVS 600

Query: 548  AASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN---------- 597
              S+I D  +      +  G      L       +    ++ +  E   N          
Sbjct: 601  EVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKTHVEMLKERDYNNYSWQVLVAS 660

Query: 598  --IELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQ 652
              +E I   E+   M    P      +  A+  T  H EIHP  +L V A++ P+ DHNQ
Sbjct: 661  GVVEYIDTLEEETVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQ 720

Query: 653  SPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNA 712
            SPRN YQ  M KQ MG  +     R D   + L  P  P+V T +       E P G N+
Sbjct: 721  SPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINS 780

Query: 713  IVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-------ETIDLSDDGNKVDRGQKL 765
            IVA+L YTGY+ ED++ILN S+V+RG      Y++          D  ++  K +RG   
Sbjct: 781  IVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSENKRVGDQEENFEKPNRGTCQ 840

Query: 766  FRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT-----------TNSWRTNSR- 813
              RN     L    D DG+   G  +   +    +  KT           +N+ R + R 
Sbjct: 841  GMRNAHYDKL----DDDGIIAPGIRVSGDD---VVIGKTITLPENDDELDSNTKRFSKRD 893

Query: 814  -----KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLW 868
                 + SE+  VD V + + NS+   +   IR R  R P IGDKF+SRHGQKG C   +
Sbjct: 894  ASTFLRNSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQY 951

Query: 869  PDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKK 928
               DM F+   G+ PD+IINPHA PSRMTI  L+E +  K GS  G+  DATPF ++V  
Sbjct: 952  RQEDMAFT-CEGLAPDIIINPHAIPSRMTIGHLIECLQGKLGSNKGEIGDATPFNDAVN- 1009

Query: 929  TNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHM 988
                         V ++   L+  G++  G EV+Y+G  G ++  ++F+GP YYQRL+HM
Sbjct: 1010 -------------VQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHM 1056

Query: 989  VSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYH 1048
            V DK   R+ G +  + RQP++GR R GG+RFGEMERD  ++HGAA  L +RL   SD +
Sbjct: 1057 VDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPY 1116

Query: 1049 VADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFR 1108
               +C+ CG +  A   +                      C  C+    +  V +PY  +
Sbjct: 1117 RVHICNFCGLIAIANLRN------------------NTFECKGCKNKTQISQVRLPYAAK 1158

Query: 1109 YLAAELAAMNI 1119
             L  EL +MNI
Sbjct: 1159 LLFQELMSMNI 1169


>gi|169597943|ref|XP_001792395.1| hypothetical protein SNOG_01766 [Phaeosphaeria nodorum SN15]
 gi|160707624|gb|EAT91415.2| hypothetical protein SNOG_01766 [Phaeosphaeria nodorum SN15]
          Length = 1443

 Score =  368 bits (945), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 316/1147 (27%), Positives = 505/1147 (44%), Gaps = 177/1147 (15%)

Query: 36   DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
            + CR   ++Y   ++ D+   Y    + V R     G+ P+MLK+ +C L   + +++  
Sbjct: 413  NECRLRDMTYAAPIVVDI--VYTRGSAKVKRTGIKIGRMPIMLKSNKCVLAAKNDREMAV 470

Query: 96   LKEEAAEMGGYFILNGLERVF---------RSVILPKQNYPMSMVRSSFRDRREGYTDKA 146
            + E   + GGYFI  G E+V          R ++   +    + V SS  +RR     K 
Sbjct: 471  MDECPLDPGGYFITRGQEKVILVQEQLNKNRVIVESAKGIMQASVTSSTHERRT----KT 526

Query: 147  VVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLT 206
             VI+            L +L + ++            +P+  VLKAL   +D EI   + 
Sbjct: 527  YVIQ---------KKGLMFLRHNTL---------SEEVPIVFVLKALGVHSDKEIL-LMI 567

Query: 207  CCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQS-- 264
               D  Y+            +   I         + T+ + L++IG   + V   L +  
Sbjct: 568  AGTDAAYQ------------DSFAINFEACAREGIHTQEKALEYIGHRVRLVKKPLGTSR 615

Query: 265  -ESYYAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQ 319
              +Y+  A   + + +  H+     +   K   +  M +++   +    + D+ D + N+
Sbjct: 616  MRNYHLEAIECLANVVLPHVPVEGTNYRPKALYVALMARRVLMAMQDPKLVDDRDYVGNK 675

Query: 320  EILLPGHLITIYLKEKLEDWLRKGKKLIQDEI---ENNGKKFDFFNLANIKKVMEKNPSK 376
             + L G ++++  ++  + +     KL  D++   +N  ++FD F+  ++ K        
Sbjct: 676  RLELSGQMLSLLFEDHFKRF-NHDFKLSIDKVLKKQNRAQEFDAFSHFSVHK-------N 727

Query: 377  QIGTSIETMLKTGRLATQT-GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
             I   IE  + TG  + +   +D   RAG T    RL+++  +     +   + F   R 
Sbjct: 728  HITMGIERAIATGNWSLKRFKMD---RAGVTHVLSRLSYIAALGMMTRI--SSQFEKTRK 782

Query: 436  TS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILR 494
             S  R L P  +G LC   TP+GE CGL+ ++     + +  D          +R  I  
Sbjct: 783  VSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTEDDE-------DPVRKIIF- 834

Query: 495  VLIGVGMIPSL--PKLVKSGPPAVLSVLLDGRVVGV--IPSSEIEKVVAHLRRLKVSAAS 550
             L+G   I S    ++ + G   V SV L+G  + +  IP   +       R  ++S   
Sbjct: 835  -LLGAEEICSQTGEEIHREG---VYSVCLNGTPIAITDIPKRFLNSFRKLRRMGRISE-- 888

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVF-- 608
                     +  + +   +  +++ T   +  RP+  +     E+Q  ++ G + +    
Sbjct: 889  ---------FTSIHINHDFCEVHVATDEGRICRPMIVV-----ENQRSKVTGRYLKALRK 934

Query: 609  --ME---------IRCPDGGDGGRRN-AFPATHEEIHPTGM-------LSVVANLTPYSD 649
              ME         +   D  +    N A   T    H T +       L  VA L PY  
Sbjct: 935  GTMEFEDFLTRGLVEYLDTNEENDTNIALKETDINQHTTHLEIEPFTILGAVAGLIPYPH 994

Query: 650  HNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTG 709
            HNQSPRN YQC M KQ +G        R D  LY +  PQ P+V+T T      D+ P G
Sbjct: 995  HNQSPRNTYQCAMGKQAIGAIAYNQFSRIDTILYLMVYPQEPMVKTRTIELTKYDKLPAG 1054

Query: 710  TNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DRGQKLFRR 768
             NA VAV++Y+GYD+EDA+ILNK+S DRG    Q+ +  +  L    N   DR      +
Sbjct: 1055 QNATVAVMSYSGYDIEDALILNKASCDRGFGRCQVMKKVSHQLKSYANGTSDRINAGALK 1114

Query: 769  NKDAKSLHSVIDSDGLPYVGQMIHPGEPYC--SIYDKTTNSWRTNSRKGSESV------F 820
              D    H  I  DG+  VG  I+ G+ +   +I   T     T  +   E        +
Sbjct: 1115 VDDPT--HQAIGQDGIAQVGARINQGDAFLLKAIPQDTAGPPSTTYKDKPEKYKLPDCSY 1172

Query: 821  VDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTG 880
            +D V +    +     K  I  R TR P +GDKFSSRHGQKG    +    DMPF+   G
Sbjct: 1173 IDKVCITENEAGTTLIK--ILNRQTRRPELGDKFSSRHGQKGTTGLIVQQEDMPFND-QG 1229

Query: 881  MRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKS 940
            + PD+I+NPH FPSRMT+  ++E ++ K G L+G     T F                 S
Sbjct: 1230 INPDIIMNPHGFPSRMTVGKMMELLSGKAGVLNGTLEYGTAFGG---------------S 1274

Query: 941  LVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGT 1000
             V+++ ++L + GF+Y G + L SG+ G       F GP+YYQ+L+HMV DK   R+ G 
Sbjct: 1275 RVEDMADILVSKGFSYTGKDYLTSGITGEAHQFYTFFGPIYYQKLKHMVQDKMHARARGP 1334

Query: 1001 MDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVL 1060
               +TRQP +GR R GG+R GEMERD L+A+GA+ LL +RL   SD H  DVC  CG + 
Sbjct: 1335 RAILTRQPTEGRARDGGLRLGEMERDCLIAYGASQLLLERLMISSDAHNVDVCEKCGQMG 1394

Query: 1061 TATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIK 1120
             + +                        C  C++ K +  + MPY  + L  EL +MN+K
Sbjct: 1395 YSGY------------------------CKLCESEKAVRRITMPYAAKLLIQELGSMNVK 1430

Query: 1121 ITLQLGD 1127
            +T+ L D
Sbjct: 1431 VTIGLAD 1437


>gi|169806505|ref|XP_001827997.1| DNA-directed RNA polymerase [Enterocytozoon bieneusi H348]
 gi|161779137|gb|EDQ31162.1| DNA-directed RNA polymerase [Enterocytozoon bieneusi H348]
          Length = 1138

 Score =  368 bits (944), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 314/1140 (27%), Positives = 511/1140 (44%), Gaps = 159/1140 (13%)

Query: 36   DHCRQAKISYTGKLMADVEFQYLDAGSPVVRE---RFNFGQFPVMLKTRRCHLQGADSQK 92
            +  R   ++Y   +  DV+  Y + G  V      R  FG  PVM+K+  C L+  + + 
Sbjct: 104  NEARLRDLTYWVNMFIDVKKAYYENGIEVDVSKTIRVPFGSLPVMVKSELCALKELNDKD 163

Query: 93   LVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCV 152
             + L E   + GGYFI+ G E+    VI+ ++    +MV    + +   YT  A  IR V
Sbjct: 164  NIRLGECPYDQGGYFIITGGEK----VIVAQERIATNMVHIFKKSQPAPYTYFA-EIRSV 218

Query: 153  ----RKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
                 K  S  +LK+   L   +R    L  ++  +PV I+ +AL   +D EI +++   
Sbjct: 219  AEIGSKLPSIFSLKVVKNLR-VIRASINLVKQD--IPVLIIFRALGFNSDKEILSYI--- 272

Query: 209  YDEKYKKEKGAVGSPLVSERVKIILAEVQDLS-LTTRLQCLQHIGEHFQPVIDGLQSESY 267
               +Y  +K         E  + +L  +++ S +  +L  L  IG+   P+  G      
Sbjct: 273  ---QYDNDK---------ELNEYLLNSLEEASCIQDQLSALDFIGKRSAPI--GSPKSKR 318

Query: 268  YAVAETVIRDYIFVHLNDN----NDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILL 323
               A+ ++      H+         K   L +M+ K+  ++      D+ D    + + L
Sbjct: 319  IDFAKQILIKEFLPHIGQQEFCETKKAYFLGYMINKILLVITGKRDVDDRDHYGKKRMDL 378

Query: 324  PGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIE 383
             G L+    K   +  L +  K +Q  +ENN +    FNL    K      S  I    +
Sbjct: 379  SGPLLANLFKVLFKKLLTETTKYLQKCVENNRE----FNLTIGLK------SSIITQGFK 428

Query: 384  TMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLP 443
              L TG    Q    +  RAG      R NFL  +S  R V+      G +  + R+L  
Sbjct: 429  YALATGNWGHQEKA-MSTRAGVAQVLSRYNFLSTLSHLRRVNTPIEKEG-KLAAPRQLHN 486

Query: 444  ESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL--IGVGM 501
              WG +CP+ TP+G  CGL+ +++    ++             K    I+ +L  +GV  
Sbjct: 487  THWGMICPIETPEGHACGLVKNLSLMAYIS-----------VGKSSNQIIEILEELGVER 535

Query: 502  IPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK----VSAASVIPDDLE 557
            +  +  +  +       +L++G  +GV  +S+  ++V  L++ +    + +   I  D++
Sbjct: 536  LEEIEYIYGT------KILVNGAWIGV--TSDPVRIVQILKKFRRHGEIDSEISIIFDIK 587

Query: 558  VGYVPLSLGGAYPGLYLFTSP-------PKFVRPVRNISLPSEE-SQNIELIGPFEQVFM 609
               + ++     P   LF           + +  ++NI +  ++  +N ++     +   
Sbjct: 588  ENEIKINSDAGRPCRPLFIVENNELLVNKQDIEDLKNIKIKWDDLIKNGKIELLDIEEEE 647

Query: 610  EIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGF 669
                  G +  +      TH EIHP  +L + A++ P+  HN SPRN YQ  M KQ MG 
Sbjct: 648  VSLIAMGLNDLKDTNKQYTHCEIHPAIILGITASVIPFPTHNPSPRNTYQSAMGKQAMGI 707

Query: 670  SVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMI 729
                   R D     L  PQ P+V T +       E P+G N IVA+  Y+GY+ ED++I
Sbjct: 708  YSTNFFKRMDTLSNILCYPQKPLVSTKSMEYIKFKELPSGQNCIVAIACYSGYNQEDSII 767

Query: 730  LNKSSVDRGMCHGQIYQT----ETIDLSDDGNKVDRGQK--LFRRNKDAKSLHSVIDSDG 783
            +N++S+DRG+    +++T    E +  +    K+ + ++  +FR  K+    + ++ +DG
Sbjct: 768  MNQASIDRGLFRSFLFRTYSDQEKMKYTGVNEKICKIERSVIFRPKKNN---YDILGNDG 824

Query: 784  LPYVGQMIH-------------------PGEPYCSIYDKTTNSWRTNSRKGSESVFVDYV 824
            +   G  ++                   PG P+    D +T   +T      E   +D V
Sbjct: 825  IVCPGTQVYGDDVIIGKMTPILDVEKSTPGNPFYLFKDTSTLIRKT------EQGNIDKV 878

Query: 825  AVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPD 884
             V  K+     +   ++ R  R P +GDKF+SRH QKGV        DMPF+   G+ PD
Sbjct: 879  IVTTKDGYKFTK---VKVRSMRIPQMGDKFASRHAQKGVVGITLKQEDMPFTS-DGLIPD 934

Query: 885  LIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDE 944
            +IINPHA PSRMTI  L E++  K  +L+G   DATPFAN  +              +DE
Sbjct: 935  VIINPHAIPSRMTIGHLFEALLGKLTTLNGIEGDATPFANKPQT-------------IDE 981

Query: 945  LGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQI 1004
            + + L   G+   G E+++SG  G +L  +IFIGP YYQRL+HMV DK   R+ G +  +
Sbjct: 982  ISKELAKYGYQKRGFEIMHSGATGYKLKSQIFIGPTYYQRLKHMVDDKLHARARGPLQIM 1041

Query: 1005 TRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATF 1064
            TRQP++GR R GG+RFGEMERD +++HGA+  L +RL   SD +   VC  CG +     
Sbjct: 1042 TRQPVEGRSREGGLRFGEMERDCIISHGASAFLKERLMDVSDVYTCGVCDNCGLICNNNC 1101

Query: 1065 IHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQ 1124
                   I  I                           +PY F+ L  EL  MNI + +Q
Sbjct: 1102 TGCNNSTISNIN--------------------------IPYAFKLLIQELQGMNIFMRIQ 1135


>gi|170579233|ref|XP_001894738.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
            putative [Brugia malayi]
 gi|158598542|gb|EDP36414.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
            putative [Brugia malayi]
          Length = 1104

 Score =  368 bits (944), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 333/1195 (27%), Positives = 527/1195 (44%), Gaps = 197/1195 (16%)

Query: 9    FEPLRELVRHHIESFDYML------------------------------------DEGLS 32
            F  +R LV+ HI S+DY +                                    +EG +
Sbjct: 22   FLQVRGLVKQHIASYDYFVSTEIKKILRANDKITSDANPSFYLKYLDIHVGMPSSEEGFN 81

Query: 33   EMFD-----HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQG 87
            ++ D      CR   ++Y+  +  D+E  Y      V+R     G+ PVML++ +C L+ 
Sbjct: 82   QINDKISPHECRLRDMTYSAPISVDIE--YTRGSQRVLRNGLIIGKMPVMLRSSKCVLKN 139

Query: 88   ADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAV 147
             +  +L  ++E   + GGYFI+ G E+V   V++ +Q     + ++     R    +   
Sbjct: 140  MNESELARVQECPYDPGGYFIIRGSEKV---VLIQEQ-----LSKNRIMIGRNSKKELQC 191

Query: 148  VIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTC 207
             I    +++ S T    Y+ +   R           +P+ I+ KA+   +D +I + +  
Sbjct: 192  EILSSTQERKSKT----YIASKKQRYYVRHNQLSDDVPIAIIFKAMGFESDHDIVSAVGL 247

Query: 208  CYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEH-----FQPVIDGL 262
              +EK+     A  +P + E             + T+   LQ+I        F P   G 
Sbjct: 248  --EEKFV----AAMAPSIEE--------CASHQIVTQEGALQYIASKVKIRKFGPATSGT 293

Query: 263  QSESYYAVAETVIRDYIFVHLN--DNNDKFN--LLIFMLQKLFSLVDHTSVSDNPDSLQN 318
             +      A   + + +  H+   D N K     L  M+++L       +  D+ D   N
Sbjct: 294  STLPREHEAIDFLSNLMIAHVPCPDGNMKMKAVYLGLMVRRLMQAEVGDTECDDRDFYGN 353

Query: 319  QEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQI 378
            + + L G L+ +  ++  + +  + K++  + +   GK      LA    +++      I
Sbjct: 354  KRLELAGSLLALLFEDVFKRFNSELKRIADNSL---GK-----TLAAPLDIVKHVRQDLI 405

Query: 379  GTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS- 437
              ++   L TG    +      +R G T    RL+++  +     ++  ++F   R  S 
Sbjct: 406  TNALVDALATGNWTIKRFK--MERQGVTQVLSRLSYISVLGMMTRIN--STFEKTRKVSG 461

Query: 438  VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLI 497
             R L P  WG LCP  TP+GE CGL+ ++     + +  D +  IR         L    
Sbjct: 462  PRSLQPSQWGMLCPSDTPEGESCGLVKNLALLSHITTDSDEKPVIR---------LLYNA 512

Query: 498  GVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLE 557
            GV  + SL        PA   V L+G +VG+  + + +++V+ +R ++          L 
Sbjct: 513  GVEDVKSL-HFSAIHNPAYHIVFLNGVIVGL--TIDPQRIVSTIRAVRRHG-------LL 562

Query: 558  VGYVPLSLGGAYPGLYLFTSPPKFVRP---VRNISLPSEESQNIELIGPFEQVFMEI--- 611
              +V +S   A   +Y+ +   +  RP   V+N S+P    ++IE +    ++F +    
Sbjct: 563  NEFVSVSTNAAQRSVYIASDGGRLCRPYIIVKN-SIPQVTQEHIEELKKGYRIFEDFVDD 621

Query: 612  ---------RCPDGGDGGRRNAFP--ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQC 660
                        D       N      TH EI P  +L V A L PY  HNQSPRN YQC
Sbjct: 622  GLIEYLDVNEMNDASIAVYENQIKPTTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQC 681

Query: 661  QMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYT 720
             M KQ MG      + R D  +Y L  PQ P+V+T T      ++ P G NAI+AV++Y+
Sbjct: 682  AMGKQAMGTIGYNQQKRIDSLMYLLVYPQRPLVKTKTIEFCNFEKLPAGQNAIIAVMSYS 741

Query: 721  GYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR--GQKLFRRNKDAKSLHS 777
            GYD+EDA++LNK+S+DRG     +Y+          N+  DR  G  +    +     H 
Sbjct: 742  GYDIEDALVLNKASLDRGYGRCLVYKHAKATARKYPNQTFDRLMGPTIEAATRKPIYKHQ 801

Query: 778  VIDSDGLPYVGQ-------MIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKN 830
            V+D +G+ YVG        MI+   P  S+    T S    +  G  S  V+Y  V +  
Sbjct: 802  VLDQEGIVYVGACIRSKQVMINKHMPVVSMEAGATVSNNDGTNIGG-SHEVEYKDVSVVY 860

Query: 831  SKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPH 890
               +P  A  R   T N          H  K          DMPF+ + GM PD+I+NPH
Sbjct: 861  RNPVPSYAE-RVLLTYNE------DDAHLVKE---------DMPFNDL-GMCPDMIMNPH 903

Query: 891  AFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLR 950
             +PSRMT+  L+E ++ K   L GKF   T F           G D+    VD + E L 
Sbjct: 904  GYPSRMTVGKLMELLSGKNAVLSGKFHYGTAF-----------GGDQ----VDIVCEELA 948

Query: 951  TCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIK 1010
              GFNY G ++L SG+ G +L+  I+ GP+YYQ+L+HMV DK   R+ G    +TRQP +
Sbjct: 949  ARGFNYLGKDMLTSGITGQQLSAYIYFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTE 1008

Query: 1011 GRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKR 1070
            GR R GG+R GEMERD L+A+GA+ LL +RL   SD    DVCS CG +   ++      
Sbjct: 1009 GRARDGGLRLGEMERDCLIAYGASMLLMERLMVSSDEFKVDVCSQCGLIGYKSW------ 1062

Query: 1071 AIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI--KITL 1123
                              C  C++S+ M T+ +PY  + L  EL +MNI  KI+L
Sbjct: 1063 ------------------CQMCRSSRTMATIKIPYACKLLFQELQSMNIVPKISL 1099


>gi|294874302|ref|XP_002766888.1| RNA polymerase beta subunit, putative [Perkinsus marinus ATCC 50983]
 gi|239868263|gb|EEQ99605.1| RNA polymerase beta subunit, putative [Perkinsus marinus ATCC 50983]
          Length = 1171

 Score =  367 bits (943), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 311/1110 (28%), Positives = 495/1110 (44%), Gaps = 135/1110 (12%)

Query: 71   FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSM 130
             G+ P+MLK+  C L+    + LV + E   + GGYFI+NG E+V  ++     N+    
Sbjct: 139  IGRIPMMLKSEYCWLKNQTERGLVEMGECVFDQGGYFIINGSEKVLIAMERMANNFVYC- 197

Query: 131  VRSSFRDRREGYTDKAVVIRCVRK---DQSSVTLKLYYLLNG-SVRLGFWLQGKEYL--- 183
                F+ ++         IR   +     S  ++K+   L G S   G  +    Y+   
Sbjct: 198  ----FQKKQPAKYTWICEIRSQAEGMLSTSGFSVKMLANLGGRSAARGQIVCSMPYINAD 253

Query: 184  LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTT 243
            +PV I+ +AL   +D E+   +   + +    +   +  P + E + I+  EV       
Sbjct: 254  IPVVILFRALGCVSDREVIERIVYDFSDT---QMMFLLRPSIEEAMPIMSQEV------- 303

Query: 244  RLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQK 299
                L  I +   P I G         A+ +++  +  HL         K   + +M+ +
Sbjct: 304  ---ALDFIAKR-GPTI-GTSKSGRIQYAKELLQKELLPHLGVKQYCEPRKAYFIGYMVHR 358

Query: 300  LFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFD 359
            L          D+ D    + + + G L+     +     ++  K+++Q ++++ G+ FD
Sbjct: 359  LLLGQLGRIAEDDRDHFGKKRMDMAGPLMAASFAQLFRKLVQDSKRILQRQVDS-GRHFD 417

Query: 360  FFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFIS 419
              +       +      Q+ T    + K+G+           R G +    RL F+  +S
Sbjct: 418  LNSAIRSASSITDGLRYQLATGNWGIDKSGKSV---------RTGVSQVLNRLTFMSTMS 468

Query: 420  FFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSR 479
              R ++     +G +    R+L    WG +CP  TP+G+  GL+ ++   C +     + 
Sbjct: 469  HLRRMNTPLERSG-KLAKPRQLHNTHWGMICPAETPEGQAVGLVKNIALMCTI-----TV 522

Query: 480  GNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV-IPSSEIEKVV 538
            G++        +++   +    + +L ++  S    +  V L+G+ VG+   ++ + + +
Sbjct: 523  GSL-------PNVVYDFLNEWGLENLDEINPSQIKHMTKVFLNGQWVGMHADATMLCETL 575

Query: 539  AHLRRLK-VSAASVIPDDLEVGYVPLSLGG--AYPGLYLFTSPP--------KFVRPVRN 587
              LRR + +     I  DL+   + +   G  A   LY+   PP        + V  +R 
Sbjct: 576  RDLRRKRDIDPEVSIIRDLQANELRIFTDGGRACRPLYVVQPPPSQKLCIKREHVEALRR 635

Query: 588  ISLPSE--------ESQNIELIGPFEQ--VFMEIRCPDGGDGGRRNAFPA------THEE 631
            + L +E        E   +E I   E+    + +   D  +  RR +  +      TH E
Sbjct: 636  MLLNNEHGGWDMLVEEGLVEYIDAEEEETCMVAMFVDDLRNAQRRKSKASSYCHTYTHCE 695

Query: 632  IHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTP 691
            IHP+ +L V A++ P+ DHNQSPRN YQ  M KQ MG        R D   + L  PQ P
Sbjct: 696  IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYATNFNMRIDTMAHVLNYPQKP 755

Query: 692  IVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETID 751
            +V T         E P G NAIVA++ Y+GY+ ED++I+N SS+DRG      +++   D
Sbjct: 756  LVGTRAMEYLRFRELPAGNNAIVAIMTYSGYNQEDSLIMNASSIDRGFMRSVHFKSYMAD 815

Query: 752  LSDDGNKVD---RGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGE-------PYCSIY 801
                G +V    R     +     +  +S +D+DGL   G  +H  +       P  +  
Sbjct: 816  EKRQGAQVVEEFRAPSWSKTYAMKRGDYSKLDNDGLINPGTRVHGDDILIGKVSPIPNQT 875

Query: 802  DKTTNSWRTNSR------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFS 855
            D+     +   R      KG+++  VD V + +    +  +   IR R  R P IGDKF+
Sbjct: 876  DEEGRIQKYTERDCSVALKGADNGVVDQVMLSVNARGH--KFTKIRVRTLRVPTIGDKFA 933

Query: 856  SRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGK 915
            SRHGQKG     +   DMPF+   G+ PD+I+NPHA PSRMTI  L+E +  K G L G+
Sbjct: 934  SRHGQKGTMGISYRQEDMPFTQF-GVVPDIIMNPHAVPSRMTIGHLVECLLGKVGLLSGE 992

Query: 916  FMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEI 975
              DATPF               S+  V E+   L   GF   G EV+Y+G  G  L  +I
Sbjct: 993  EGDATPF---------------SQVTVHEIMARLHELGFQRQGREVMYNGHTGLRLPAKI 1037

Query: 976  FIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAY 1035
            FIGP YYQRL+HMV DK   R+ G M  +TRQP++GR R GG+RFGEMERD +++HGAA 
Sbjct: 1038 FIGPTYYQRLKHMVEDKIHSRARGPMQMLTRQPMEGRGREGGLRFGEMERDCMISHGAAK 1097

Query: 1036 LLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTS 1095
             L +RL   SD +   VC  CG    A                          C AC+ S
Sbjct: 1098 FLKERLFDISDAYRVHVCDNCGMFAIANLYK------------------NHYECRACKNS 1139

Query: 1096 KGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
              +  V +PY  + L  EL  M+I   L L
Sbjct: 1140 T-ISQVHIPYACKLLFQELMTMSIMPKLVL 1168


>gi|170291136|ref|YP_001737952.1| DNA-directed RNA polymerase subunit B [Candidatus Korarchaeum
            cryptofilum OPF8]
 gi|170175216|gb|ACB08269.1| DNA-directed RNA polymerase subunit B [Candidatus Korarchaeum
            cryptofilum OPF8]
          Length = 1121

 Score =  367 bits (943), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 310/1212 (25%), Positives = 531/1212 (43%), Gaps = 183/1212 (15%)

Query: 1    MARKKSADFEPL-------RELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLM--- 50
            ++++   DF P+       R L    IESF+  L+ G+ E+ D  ++ ++    KL+   
Sbjct: 2    LSKRSEVDFYPIVKAYFRERNLADVQIESFNRFLERGIQEVVDAFKEIELVENYKLILSR 61

Query: 51   ---------------------------------ADVEFQYLDAGSPVVRERFNFGQFPVM 77
                                              ++E +    G  +  ER   G  P+M
Sbjct: 62   VYVGRPEIDEYDGSSLPAMPNEIRLRNADYIAPIELEIKVYAGGMELKTERVRIGHLPIM 121

Query: 78   LKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRD 137
            +K++ C+L G D ++L+S  E+  + GGYFI+NG ERV   +++     P  ++      
Sbjct: 122  VKSKGCYLYGLDEKRLISKGEDPRDPGGYFIINGSERV---LVMRDDIAPNKVIVEQTVA 178

Query: 138  RREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTN 197
              + Y+  A ++      ++ + L+ YY+ +G+++      G    +PV ++LKAL    
Sbjct: 179  ENKPYSHVAQIVSARAGLRTRLYLE-YYMRDGTIKAS---TGALRGIPVAMLLKALGLER 234

Query: 198  DLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQP 257
            D +I + ++   DE   +   ++    V  R     AE +   + TR + L +IG     
Sbjct: 235  DEDIVDAISSVDDEIRSEFLYSLDD--VQRR-----AEEEGAQIITREEALDYIGRRLVQ 287

Query: 258  VIDGLQSESYYAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQKLFSLVDHTSVSDNP 313
             +       Y   A+  +R+    H+     DN  K   L  M++KL  +V      D+ 
Sbjct: 288  AVPRADRIRY---AKEYLRNNFLPHIGVSEEDNIVKAYFLAKMIEKLLKVVRGKLEPDDK 344

Query: 314  DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKN 373
            D   N+ + L G L+    ++     +RK K+   +++ +     D   +   +K++ + 
Sbjct: 345  DHFSNKRLRLSGTLMQEVFRDSFYQLVRKLKEKADEQLSSGVYDLDIRRIIQSQKLVTQR 404

Query: 374  PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
              + + T               G DL    G +   ER N++  +   R V+     AGL
Sbjct: 405  IIRAVAT-----------GAWPGGDL----GVSQNLERTNYIATLHHLRRVNSPLP-AGL 448

Query: 434  RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
                VR+    S G LCP+ TP+G   GL+  +   C V            F      I+
Sbjct: 449  PLHEVRQTHGTSIGRLCPLETPEGTNVGLVRSLAIFCDVT-----------FGTDPEPII 497

Query: 494  RVLIGVGMIP---SLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAAS 550
             +++  G  P   + P+ V S  P    V ++GR+V    + + E++V+ LR  +   A 
Sbjct: 498  ELVLDWGAKPAKEAKPREVGSLTP----VYVNGRLVAF--TDKPEELVSFLREKR---AE 548

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNIS--------LPSEESQNIELIG 602
            + P   EV ++     GA   +++     +  RP+  +S        LP  +S  +    
Sbjct: 549  LNP---EVNFIYNREEGA---VFINADAGRMRRPLIPVSKLKEAMELLPKVDSGELSFTD 602

Query: 603  PFEQVFMEIRCPDGGDGG------RRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656
              +   +E+   D  +               TH +  P  M  V A+  PY++HN  PR+
Sbjct: 603  LVKMGVVELLDADEEEYAVVAQSIEEITDKHTHFDFAPYAMFGVAASQIPYAEHNNIPRD 662

Query: 657  MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
            +    M +Q +G  +   + R D + + +  PQ PIV T      G +  P+G N +VA+
Sbjct: 663  IIGSNMVRQGLGEYLANWRLRFDSRAFLMFYPQRPIVETRGAEITGYNYRPSGQNLVVAL 722

Query: 717  LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD----DGNKVDRGQKLFR-RNKD 771
            L   GY+M+DA++++K ++DRG      ++T   +       +G+K +    L +   K 
Sbjct: 723  LPMDGYNMDDALVMSKGAIDRGAARAVFFRTYETEARRHAIIEGDKFENPVALKKVSGKK 782

Query: 772  AKSLHSVIDSDGLPYVGQMIHPGE------------PYCSI---YDKTTNSWRTNS---R 813
             +  +  +  DG+      +  G+            P  ++   Y + T   R  S   R
Sbjct: 783  EEQYYQKLGEDGIVDPETYVEGGDVLIGKTSPPRFSPELTVGSGYPQYTFERRDTSISMR 842

Query: 814  KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDM 873
                 V  D +       + L     +  R TR P +GDKF++RHGQKGV   ++   DM
Sbjct: 843  AWERGVVTDVLLATKTGGEKL---VRVNVRETRPPELGDKFATRHGQKGVLGMIYRHEDM 899

Query: 874  PFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDT 933
            PF+   G+ PD++++PH  PSRMTI  L E +A K G+L G+F+D TPF +         
Sbjct: 900  PFTA-QGIIPDIVLDPHTIPSRMTIGQLYEIIAGKVGALEGRFVDGTPFMSEP------- 951

Query: 934  GTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKF 993
                    V++L E L   GF Y G E++Y G  G  +   +FIG  YYQRL+HMV DK 
Sbjct: 952  --------VEDLMEALVKLGFEYSGEEIMYDGRTGRMIKAPVFIGISYYQRLKHMVRDKI 1003

Query: 994  QVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVC 1053
              R+ G M  +TRQP++GR RGGG+R GEME + L++HGAA ++ DR    SD  +  VC
Sbjct: 1004 HARARGQMQLLTRQPVEGRARGGGLRLGEMEGEVLISHGAASVIRDRYIDQSDKTIIYVC 1063

Query: 1054 SLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAE 1113
              CG++    F + +                 +  C  CQ+S  ++ +   Y  +    E
Sbjct: 1064 KECGTI---AFFNQKT---------------NEFFCPRCQSSVEVKPLITSYASKLFIEE 1105

Query: 1114 LAAMNIKITLQL 1125
            L + ++ + L +
Sbjct: 1106 LMSGHVDVRLSV 1117


>gi|195501705|ref|XP_002097907.1| GE24221 [Drosophila yakuba]
 gi|194184008|gb|EDW97619.1| GE24221 [Drosophila yakuba]
          Length = 1176

 Score =  367 bits (942), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 322/1151 (27%), Positives = 509/1151 (44%), Gaps = 156/1151 (13%)

Query: 34   MFDHCRQAKISYTGKLMADV-EFQYLDAGSPV--VRERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+ + + ++   PV    ++   G+ P+ML++  C L     
Sbjct: 110  MPNEARLRNLTYSAPLYVDITKTKNVEGLDPVETQHQKTFIGKIPIMLRSTYCLLSQLTD 169

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  Y  K  +  
Sbjct: 170  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGK--YAFKTEIRS 224

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  +  GS  +     G+  +         +P+ IV +AL    D +
Sbjct: 225  CLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 284

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAE---VQDLSLTTRLQCLQHIGEHFQP 257
            I  H+   +D+           P + E VK  L E   VQ+ ++      L  IG   + 
Sbjct: 285  ILEHIIYDFDD-----------PEMMEMVKPSLDEAFVVQEQNVA-----LNFIGA--RG 326

Query: 258  VIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNP 313
               G+  +     A+ +++  +  H+  ++     K   L +M+ +L          D+ 
Sbjct: 327  ARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDR 386

Query: 314  DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKN 373
            D   N+ + L G L+    +   ++ +++ +   Q  I+  GK F      N++  ++ N
Sbjct: 387  DHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDR-GKDF------NLELAIKTN 439

Query: 374  PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
                I   +   L TG    Q     Q RAG +    RL F   +S  R V+      G 
Sbjct: 440  I---ITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG- 494

Query: 434  RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
            +    R+L    WG LCP  TP+G   GL+ ++     ++                + IL
Sbjct: 495  KLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPIL 543

Query: 494  RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VS 547
              L    M  +L ++  S       + ++G  VG+    + E+++A LR+L+      VS
Sbjct: 544  EFLEEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVS 600

Query: 548  AASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN---------- 597
              S+I D  +      +  G      L       +    ++ +  E   N          
Sbjct: 601  EVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKTHVEMLKERDYNNYSWQVLVAS 660

Query: 598  --IELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQ 652
              +E I   E+   M    P      +  A+  T  H EIHP  +L V A++ P+ DHNQ
Sbjct: 661  GVVEYIDTLEEETVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQ 720

Query: 653  SPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNA 712
            SPRN YQ  M KQ MG  +     R D   + L  P  P+V T +       E P G N+
Sbjct: 721  SPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINS 780

Query: 713  IVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-------ETIDLSDDGNKVDRGQKL 765
            IVA+L YTGY+ ED++ILN S+V+RG      Y++          D  ++  K  RG   
Sbjct: 781  IVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSENKRVGDQEENFEKPHRGTCQ 840

Query: 766  FRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT-----------TNSWRTNSR- 813
              RN     L    D DG+   G  +   +    +  KT           +N+ R + R 
Sbjct: 841  GMRNAHYDKL----DDDGIIAPGIRVSGDD---VVIGKTITLPENDDELDSNTKRFSKRD 893

Query: 814  -----KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLW 868
                 + SE+  VD V + + NS+   +   IR R  R P IGDKF+SRHGQKG C   +
Sbjct: 894  ASTFLRNSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQY 951

Query: 869  PDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKK 928
               DM F+   G+ PD+IINPHA PSRMTI  L+E +  K GS  G+  DATPF ++V  
Sbjct: 952  RQEDMAFT-CEGLAPDIIINPHAIPSRMTIGHLIECLQGKLGSNKGEIGDATPFNDAVN- 1009

Query: 929  TNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHM 988
                         V ++   L+  G++  G EV+Y+G  G ++  ++F+GP YYQRL+HM
Sbjct: 1010 -------------VQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHM 1056

Query: 989  VSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYH 1048
            V DK   R+ G +  + RQP++GR R GG+RFGEMERD  ++HGAA  L +RL   SD +
Sbjct: 1057 VDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPY 1116

Query: 1049 VADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFR 1108
               +C+ CG +  A   +                      C  C+    +  V +PY  +
Sbjct: 1117 RVHICNFCGLIAIANLRN------------------NTFECKGCKNKTQISQVRLPYAAK 1158

Query: 1109 YLAAELAAMNI 1119
             L  EL +MNI
Sbjct: 1159 LLFQELMSMNI 1169


>gi|195570991|ref|XP_002103487.1| GD18948 [Drosophila simulans]
 gi|194199414|gb|EDX12990.1| GD18948 [Drosophila simulans]
          Length = 1176

 Score =  367 bits (942), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 322/1151 (27%), Positives = 510/1151 (44%), Gaps = 156/1151 (13%)

Query: 34   MFDHCRQAKISYTGKLMADV-EFQYLDAGSPV--VRERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+ + + ++   PV    ++   G+ P+ML++  C L     
Sbjct: 110  MPNEARLRNLTYSAPLYVDITKTKNVEGLDPVETQHQKTFIGKIPIMLRSTYCLLSQLTD 169

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  Y  K  +  
Sbjct: 170  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGK--YAFKTEIRS 224

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  +  GS  +     G+  +         +P+ IV +AL    D +
Sbjct: 225  CLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 284

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAE---VQDLSLTTRLQCLQHIGEHFQP 257
            I  H+   +D+           P + E VK  L E   VQ+ ++      L  IG   + 
Sbjct: 285  ILEHIIYDFDD-----------PEMMEMVKPSLDEAFVVQEQNVA-----LNFIGA--RG 326

Query: 258  VIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNP 313
               G+  +     A+ +++  +  H+  ++     K   L +M+ +L          D+ 
Sbjct: 327  ARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDR 386

Query: 314  DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKN 373
            D   N+ + L G L+    +   ++ +++ +   Q  I+  GK F      N++  ++ N
Sbjct: 387  DHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDR-GKDF------NLELAIKTN 439

Query: 374  PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
                I   +   L TG    Q     Q RAG +    RL F   +S  R V+      G 
Sbjct: 440  I---ITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG- 494

Query: 434  RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
            +    R+L    WG LCP  TP+G   GL+ ++     ++                + IL
Sbjct: 495  KLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPIL 543

Query: 494  RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VS 547
              L    M  +L ++  S       + ++G  VG+    + E+++A LR+L+      VS
Sbjct: 544  EFLEEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVS 600

Query: 548  AASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN---------- 597
              S+I D  +      +  G      L       +    ++ +  E   N          
Sbjct: 601  EVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKTHVEMLKERDYNNYSWQVLVAS 660

Query: 598  --IELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQ 652
              +E I   E+   M    P      +  A+  T  H EIHP  +L V A++ P+ DHNQ
Sbjct: 661  GVVEYIDTLEEETVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQ 720

Query: 653  SPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNA 712
            SPRN YQ  M KQ MG  +     R D   + L  P  P+V T +       E P G N+
Sbjct: 721  SPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINS 780

Query: 713  IVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-------ETIDLSDDGNKVDRGQKL 765
            IVA+L YTGY+ ED++ILN S+V+RG      Y++          D  ++  K  RG   
Sbjct: 781  IVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSENKRVGDQEENFEKPHRGTCQ 840

Query: 766  FRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT-----------TNSWRTNSR- 813
              RN     L    D DG+   G  +   +    +  KT           +N+ R + R 
Sbjct: 841  GMRNAHYDKL----DDDGIIAPGIRVSGDD---VVIGKTITLPENDDELDSNTKRFSKRD 893

Query: 814  -----KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLW 868
                 + SE+  VD V + + NS+   +   IR R  R P IGDKF+SRHGQKG C   +
Sbjct: 894  ASTFLRNSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQY 951

Query: 869  PDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKK 928
               DM F+   G+ PD+IINPHA PSRMTI  L+E +  K GS  G+  DATPF ++V  
Sbjct: 952  RQEDMAFT-CEGLAPDIIINPHAIPSRMTIGHLIECLQGKLGSNKGEIGDATPFNDAVN- 1009

Query: 929  TNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHM 988
                         V ++   L+  G++  G EV+Y+G  G ++  ++F+GP YYQRL+HM
Sbjct: 1010 -------------VQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHM 1056

Query: 989  VSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYH 1048
            V DK   R+ G +  + RQP++GR R GG+RFGEMERD  ++HGAA  L +RL   SD +
Sbjct: 1057 VDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPY 1116

Query: 1049 VADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFR 1108
               +C+ CG +  A   +                      C +C+    +  V +PY  +
Sbjct: 1117 RVHICNFCGLIAIANLRN------------------NTFECKSCKNKTQISQVRLPYAAK 1158

Query: 1109 YLAAELAAMNI 1119
             L  EL +MNI
Sbjct: 1159 LLFQELMSMNI 1169


>gi|156084492|ref|XP_001609729.1| DNA-directed RNA polymerase, beta subunit family protein [Babesia
            bovis]
 gi|154796981|gb|EDO06161.1| DNA-directed RNA polymerase, beta subunit family protein [Babesia
            bovis]
          Length = 1207

 Score =  367 bits (942), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 322/1155 (27%), Positives = 505/1155 (43%), Gaps = 168/1155 (14%)

Query: 39   RQAKISYTGKLMADVEFQ-YL---DAGSPVVRE-----RFNFGQFPVMLKTRRCHLQGAD 89
            R   ++Y+ ++  D+E + YL   +  +  ++E     R   G+ P+MLK+  C  +   
Sbjct: 150  RLRNLTYSSQIYVDIEQKTYLRDENTNTETLQETITYPRIELGRIPMMLKSAYCWTKDIS 209

Query: 90   SQKLVSLKEEAAEMGGYFILNGLERV----------FRSVILPKQNYPMSMVRSSFRDRR 139
               L  + E   + GGYFI+NG ERV          +  +   KQ    S+V +  R + 
Sbjct: 210  EDDLADVGECPFDEGGYFIVNGGERVLIGQERMANNYIYIFKKKQPSKYSLV-AEIRSQP 268

Query: 140  EGYTDKAVVIRCVRKDQSSVT---LKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDT 196
            E ++        + K  S +     K +  L GS+    +L+     +P+ I+ +AL   
Sbjct: 269  E-FSQGTTPFSIMMKSTSGIAGNRFKSHGQLVGSIP---YLKSD---IPIAILFRALGCV 321

Query: 197  NDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ 256
             D +I   +   YD + K+         +   ++  L E  D S  T+  CL  IG+   
Sbjct: 322  ADRDILQRIV--YDFEDKQ---------MLTLMRPSLEETADYS--TQEMCLDFIGKRGP 368

Query: 257  PVIDGLQSESYYAVAETVIRDYIFVHLNDN----NDKFNLLIFMLQKLFSLVDHTSVSDN 312
             V   L++   YA  + ++R +   H+       + K   L +M+ +L          D+
Sbjct: 369  TVGAPLETRVQYA--KDLLRQHFLPHVGTEPGCESRKCYFLGYMVHRLLLSRLGRIPEDD 426

Query: 313  PDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEK 372
             D    + + L G L+           ++  K+++Q +I++ G++FD             
Sbjct: 427  RDHFGKKRLDLAGSLMASSFGTLFRKMVKDTKRILQQQIDS-GREFDVAGAVR------- 478

Query: 373  NPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAG 432
              + QI   ++  L TG         +  R G +    RL F  ++S  R ++      G
Sbjct: 479  -SATQITHGLQYQLLTGNWGRDRDGKVV-RTGVSQVLNRLTFASYLSHLRRLNTPLGREG 536

Query: 433  LRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSI 492
             +    R+L    WG +CP  TP+G+  GL+ ++   C ++                ++I
Sbjct: 537  -KIAKPRQLHNTHWGMICPAETPEGQAVGLVKNLALMCFIS-----------VGTAASTI 584

Query: 493  LRVLIGVGMIPSLPKLVKSGPPAVLS----VLLDGRVVGVIPSSE--IEKVVAHLRRLKV 546
               L   GM  SL ++    PP V+     + ++G  VG    +E  ++ ++   RR  +
Sbjct: 585  NEFLCEWGM-DSLDEV----PPEVIKDRIKIFINGTWVGCFDEAESLVKTLLELRRRGNI 639

Query: 547  SAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP-----------VRNISLPSEES 595
            +A + I  D+    V +           FT   + +RP           +    +   ++
Sbjct: 640  AAETSIVCDIVSQEVKI-----------FTDAGRAMRPLLIVENGNTLAITKTDIARLDN 688

Query: 596  QNIELIGPFEQVFME-IRCPDG--------GDGGRRNAFPA---THEEIHPTGMLSVVAN 643
                  G  E   +E + C +          +  + N+      TH EIHP+ +L V A+
Sbjct: 689  NECNWDGLIESGVVEYVDCEEEEMCMIAMFAEDLKNNSTYCNTYTHCEIHPSMILGVCAS 748

Query: 644  LTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGI 703
            + P+ D NQSPRN YQ  M KQ MG        R D   + L  PQ P+V T +      
Sbjct: 749  IIPFPDQNQSPRNTYQSAMGKQAMGVYATNFNLRMDPLSHLLYYPQKPLVCTRSMEFLRF 808

Query: 704  DEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQ 763
             E P G NAIVA++ YTGY+ ED++I+N+SS+DRG+      +T   +    G+ V    
Sbjct: 809  RELPAGINAIVAIMCYTGYNQEDSLIMNQSSIDRGLFRSAFNRTYVSEEKHVGSTV---V 865

Query: 764  KLFRRNKDAKSL------HSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR---- 813
            + F R   A  +      ++ +D+DGL   G  +   +          +    N R    
Sbjct: 866  ERFERPNPATCVGLKRGDYTKLDADGLVQPGSRVLGDDVIIGRTSACNDEEDENLRQDCS 925

Query: 814  ---KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPD 870
               + SE+  VD V +   N+K   + A ++ R  R P IGDKF+SRHGQKG     +  
Sbjct: 926  CCLRTSENGVVDTVLIS-SNAKG-SRFAKVKVRSIRVPQIGDKFASRHGQKGTIGMTYRT 983

Query: 871  IDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTN 930
             D+PF+   G+ PD+I+NPHA PSRMTI  L+E +  K G+  G   DATPF        
Sbjct: 984  EDLPFT-CEGIVPDIIMNPHAVPSRMTIGHLVECLVGKVGACCGMEGDATPF-------- 1034

Query: 931  GDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVS 990
                   SK  V  + E L  CG+  HG E L+ G  G  +  +IFIGP YYQRL+HMV 
Sbjct: 1035 -------SKLTVQHVAERLFECGYGKHGNEALHCGFTGEMIVSKIFIGPTYYQRLKHMVE 1087

Query: 991  DKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVA 1050
            DK   R+ G +  +TRQP +GR R GG+RFGEMERD +++HGAA +L +RL   SD    
Sbjct: 1088 DKIHARARGPVTMLTRQPTEGRSRDGGLRFGEMERDCMISHGAAKMLKERLFDQSDAFRI 1147

Query: 1051 DVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYL 1110
             VC  CG    A                          C AC     +  V +PY  + L
Sbjct: 1148 HVCDRCGLCCVADLNR------------------NNFECTACDNKTNISQVTIPYACKLL 1189

Query: 1111 AAELAAMNIKITLQL 1125
              EL AM I   L L
Sbjct: 1190 IQELMAMAIYPKLLL 1204


>gi|17136444|ref|NP_476706.1| RNA polymerase II 140kD subunit [Drosophila melanogaster]
 gi|195329082|ref|XP_002031240.1| GM24152 [Drosophila sechellia]
 gi|12644108|sp|P08266.2|RPB2_DROME RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
            polymerase II subunit 2; Short=RNA polymerase II subunit
            B2; AltName: Full=DNA-directed RNA polymerase II 140 kDa
            polypeptide
 gi|7299847|gb|AAF55024.1| RNA polymerase II 140kD subunit [Drosophila melanogaster]
 gi|27819971|gb|AAO25022.1| LD22387p [Drosophila melanogaster]
 gi|194120183|gb|EDW42226.1| GM24152 [Drosophila sechellia]
          Length = 1176

 Score =  367 bits (942), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 322/1151 (27%), Positives = 509/1151 (44%), Gaps = 156/1151 (13%)

Query: 34   MFDHCRQAKISYTGKLMADV-EFQYLDAGSPV--VRERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+ + + ++   PV    ++   G+ P+ML++  C L     
Sbjct: 110  MPNEARLRNLTYSAPLYVDITKTKNVEGLDPVETQHQKTFIGKIPIMLRSTYCLLSQLTD 169

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  Y  K  +  
Sbjct: 170  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGK--YAFKTEIRS 224

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  +  GS  +     G+  +         +P+ IV +AL    D +
Sbjct: 225  CLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 284

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAE---VQDLSLTTRLQCLQHIGEHFQP 257
            I  H+   +D+           P + E VK  L E   VQ+ ++      L  IG   + 
Sbjct: 285  ILEHIIYDFDD-----------PEMMEMVKPSLDEAFVVQEQNVA-----LNFIGA--RG 326

Query: 258  VIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNP 313
               G+  +     A+ +++  +  H+  ++     K   L +M+ +L          D+ 
Sbjct: 327  ARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDR 386

Query: 314  DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKN 373
            D   N+ + L G L+    +   ++ +++ +   Q  I+  GK F      N++  ++ N
Sbjct: 387  DHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDR-GKDF------NLELAIKTN 439

Query: 374  PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
                I   +   L TG    Q     Q RAG +    RL F   +S  R V+      G 
Sbjct: 440  I---ITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG- 494

Query: 434  RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
            +    R+L    WG LCP  TP+G   GL+ ++     ++                + IL
Sbjct: 495  KLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPIL 543

Query: 494  RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VS 547
              L    M  +L ++  S       + ++G  VG+    + E+++A LR+L+      VS
Sbjct: 544  EFLEEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVS 600

Query: 548  AASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN---------- 597
              S+I D  +      +  G      L       +    ++ +  E   N          
Sbjct: 601  EVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKTHVEMLKERDYNNYSWQVLVAS 660

Query: 598  --IELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQ 652
              +E I   E+   M    P      +  A+  T  H EIHP  +L V A++ P+ DHNQ
Sbjct: 661  GVVEYIDTLEEETVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQ 720

Query: 653  SPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNA 712
            SPRN YQ  M KQ MG  +     R D   + L  P  P+V T +       E P G N+
Sbjct: 721  SPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINS 780

Query: 713  IVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-------ETIDLSDDGNKVDRGQKL 765
            IVA+L YTGY+ ED++ILN S+V+RG      Y++          D  ++  K  RG   
Sbjct: 781  IVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSENKRVGDQEENFEKPHRGTCQ 840

Query: 766  FRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT-----------TNSWRTNSR- 813
              RN     L    D DG+   G  +   +    +  KT           +N+ R + R 
Sbjct: 841  GMRNAHYDKL----DDDGIIAPGIRVSGDD---VVIGKTITLPENDDELDSNTKRFSKRD 893

Query: 814  -----KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLW 868
                 + SE+  VD V + + NS+   +   IR R  R P IGDKF+SRHGQKG C   +
Sbjct: 894  ASTFLRNSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQY 951

Query: 869  PDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKK 928
               DM F+   G+ PD+IINPHA PSRMTI  L+E +  K GS  G+  DATPF ++V  
Sbjct: 952  RQEDMAFT-CEGLAPDIIINPHAIPSRMTIGHLIECLQGKLGSNKGEIGDATPFNDAVN- 1009

Query: 929  TNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHM 988
                         V ++   L+  G++  G EV+Y+G  G ++  ++F+GP YYQRL+HM
Sbjct: 1010 -------------VQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHM 1056

Query: 989  VSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYH 1048
            V DK   R+ G +  + RQP++GR R GG+RFGEMERD  ++HGAA  L +RL   SD +
Sbjct: 1057 VDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPY 1116

Query: 1049 VADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFR 1108
               +C+ CG +  A   +                      C  C+    +  V +PY  +
Sbjct: 1117 RVHICNFCGLIAIANLRN------------------NTFECKGCKNKTQISQVRLPYAAK 1158

Query: 1109 YLAAELAAMNI 1119
             L  EL +MNI
Sbjct: 1159 LLFQELMSMNI 1169


>gi|167044136|gb|ABZ08819.1| putative RNA polymerase Rpb2, domain 6 [uncultured marine
            crenarchaeote HF4000_APKG5C13]
          Length = 1114

 Score =  367 bits (942), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 319/1132 (28%), Positives = 507/1132 (44%), Gaps = 160/1132 (14%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
              R   +SY   LM  +E   ++ G  +     + G  P+M+K+  C L+    QKL+  
Sbjct: 84   EARLRNVSYVAPLM--LEASVIEDGKTLENRFLHIGDIPIMVKSEGCILRNFSEQKLIDH 141

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
             E+  + GGYFI+NG ERV   V L   +Y   +V +   D+  G   K V    +    
Sbjct: 142  AEDPYDPGGYFIINGSERVI--VGLEDLSYNKIIVDA---DKIGG---KKVFKAKIYSSI 193

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
                 KL  +L     +   + G    +P+  +++AL   +D EI + ++   ++K + E
Sbjct: 194  VGYRAKLELVLKEDGLIVARIPGSPVDIPIITLVRALGLESDKEIASAISL--NDKIQNE 251

Query: 217  KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
                           +    +   ++T    +++I +   P   G+  E     AET++ 
Sbjct: 252  ---------------LEGSFEKTEISTPKDAIEYISKRIAP---GMLEEFQIKRAETLLD 293

Query: 277  DYIFVHL----NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYL 332
              +  HL     +  +K   L     KL  L       D+ D   N+ +   G ++    
Sbjct: 294  WGLLPHLGKQPENRKEKIQFLGEAACKLLELKLGWIQPDDKDHYGNKVVKFAGQMLADLF 353

Query: 333  KEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLA 392
            +    + +R  K     ++E +G+K        I  V        I   +   + TG   
Sbjct: 354  RTAFRNLVRDMKY----QLERSGQK------RGINAVSAAIRPGIISDKLNNAIATGNWG 403

Query: 393  TQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT---SVRKLLPESWGFL 449
                   + R G T   +R N+L  IS  R V    S    RT      R L    +G +
Sbjct: 404  -------RGRVGVTQLLDRTNYLSTISHLRRVQSPLS----RTQPNFEARDLHSTHFGRI 452

Query: 450  CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
            CP  TP+G  CGL+ ++  +  ++    S   I    +         IG      +   V
Sbjct: 453  CPSETPEGSNCGLVKNLALSAIISVSVPSEEIIEKMYE---------IGTEYFTDVKDSV 503

Query: 510  KSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAY 569
            K        V +DG+++G     + +K+ + LR L+ S  S I   + +        GA 
Sbjct: 504  KKDGT---RVFVDGKLIGY--HKDGKKLASSLRELRRS--SKIHPHIGISIHIPEQEGAT 556

Query: 570  PGLYLFTSPPKFVRPVRNIS--------------LPSEESQN-------IELIGPFEQVF 608
              LY+  +  + +R +  +               L    S N       IELI   E+  
Sbjct: 557  KRLYVNCNAGRVLRSLIVVKDGKSTLTPDLLDKILKKLVSWNDLVRMGVIELIDANEEEN 616

Query: 609  MEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMG 668
              I   D      ++    TH EI P+ +L   A++ PY +HNQSPRN Y+  MAKQ++G
Sbjct: 617  CFITFDD------KHVKKHTHTEIFPSAILGAGASIIPYPEHNQSPRNTYESAMAKQSLG 670

Query: 669  FSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAM 728
            FS   +      + + +  PQTPIV T      G+++ P G N +VAVL + GY++EDA+
Sbjct: 671  FSTPMMNTSTYVRQHTMLYPQTPIVTTRAMGLLGLEKRPAGQNCVVAVLPFDGYNIEDAI 730

Query: 729  ILNKSSVDRGMCHG---QIYQTET------------IDLSDDGNKVDRGQKLFRRNKDAK 773
            +L+KS+++RG+      +IY+ E+            I  +DD  +  +G+K +R  +D  
Sbjct: 731  VLSKSAIERGLGRTLFYRIYEAESKQYPGGMRDNFEIPNADDNLRGYKGEKSYRLLEDDG 790

Query: 774  SLHSVID-SDGLPYVGQMIHPG--EPYCSIYDKTTNSWRTNSRKG---SESVFVDYVAVD 827
             + S    S G   +G+   P   E Y  +  + +  +R ++  G   SE+  VD +   
Sbjct: 791  IVASESRVSGGDILIGKTSPPRFMEEYHEL--EGSGPYRRDTSIGVRPSETGVVDTII-- 846

Query: 828  MKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLII 887
            +  S    +   +R R  R P IGDKF+SRHGQKGV   L    D+P++   G+ PD++I
Sbjct: 847  LTQSAEGGKMFKVRIRDMRLPEIGDKFASRHGQKGVVGLLAKAEDLPYTA-DGISPDVLI 905

Query: 888  NPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGE 947
            NPHAFPSRMT+ M+LES+  K  ++ G+ +DA+ F                   VDE+  
Sbjct: 906  NPHAFPSRMTVGMMLESITGKAAAMRGRKVDASAFVGEK---------------VDEVKS 950

Query: 948  MLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQ 1007
            +L   GF Y G E++Y G  G +   E+FIG VYYQ+L HMV+DK   R+ G +  +T+Q
Sbjct: 951  VLEDAGFKYSGKEIMYDGRTGKQFPVEVFIGVVYYQKLHHMVADKIHARARGQVQMLTKQ 1010

Query: 1008 PIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHP 1067
            P +GR RGGG+RFGEMERD ++A+GA+ +L DRL   SD     VC  CG  L A     
Sbjct: 1011 PTEGRARGGGLRFGEMERDCIIAYGASMILKDRLLDESDKSDIFVCERCG--LVAYHDIK 1068

Query: 1068 QKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
            Q+R                  C  C     + +V++ Y F+ L  E++ +NI
Sbjct: 1069 QRR----------------FYCRVCDKKGKVSSVSVAYAFKLLLQEMSCLNI 1104


>gi|324120624|dbj|BAJ78703.1| RNA polymerase II second largest subunit [Nomadacris japonica]
          Length = 1173

 Score =  367 bits (941), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 321/1144 (28%), Positives = 511/1144 (44%), Gaps = 142/1144 (12%)

Query: 34   MFDHCRQAKISYTGKLMADV---EFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+     ++ +     + ++   G+ P+ML++  C L     
Sbjct: 107  MPNEARLRNLTYSAPLYVDILKRVEKHKEEPVETLHQKTFIGKIPIMLRSTYCLLSTLTD 166

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  Y  KA +  
Sbjct: 167  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKYAY--KAEIRS 221

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  +  G   +     G+  +         +P+ I  +AL    D +
Sbjct: 222  CLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIVAILPYIKQEIPIIIAFRALGFVADRD 281

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAE---VQDLSLTTRLQCLQHIGEHFQP 257
            I  H+   +D+           P + E VK  L E   VQ+ ++      L  IG   + 
Sbjct: 282  ILEHIIYDFDD-----------PEMMEMVKPSLDEAFVVQEQNVA-----LNFIGT--RG 323

Query: 258  VIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNP 313
               G+  E     A  +++  +  H+  ++     K   L +M+ +L          D+ 
Sbjct: 324  ARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDR 383

Query: 314  DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKN 373
            D   N+ + L G L+    +   ++ +++ +   Q  I + GK F+   LA IK      
Sbjct: 384  DHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFI-DRGKDFNL-ELA-IK------ 434

Query: 374  PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
             +K I   +   L TG    Q     Q RAG +    RL F   +S  R V+      G 
Sbjct: 435  -TKIITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG- 491

Query: 434  RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
            +    R+L    WG +CP  TP+G   GL+ ++         Y S G+        + IL
Sbjct: 492  KLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMA-----YISVGS------QPSPIL 540

Query: 494  RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VS 547
              L    M  +L ++  S       + ++G  VG+    + E+++A LR+L+      VS
Sbjct: 541  EFLEEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVS 597

Query: 548  AASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN---------- 597
              S+I D  +      +  G      L       +   R+I    E   +          
Sbjct: 598  EVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKRHIDRLKERDYDNYGWQMLVAE 657

Query: 598  --IELIGPFEQ-VFMEIRCPDGGDGGRRNAFPATHE--EIHPTGMLSVVANLTPYSDHNQ 652
              +E I   E+   M     D     +  A+ +TH   EIHP  +L V A++ P+ DHNQ
Sbjct: 658  GVVEYIDTLEEETVMIAMSLDDLRHDKSYAYCSTHTHCEIHPAMILGVCASIIPFPDHNQ 717

Query: 653  SPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNA 712
            SPRN YQ  M KQ MG  +     R D   + L  P  P+V T +       E P G N+
Sbjct: 718  SPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINS 777

Query: 713  IVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVDRGQKLFRRNKD 771
            +VA+L YTGY+ ED++I+N S+V+RG      +++ +  +    G++ ++ +K  R+   
Sbjct: 778  VVAILCYTGYNQEDSVIMNASAVERGFFRSVFFRSYKDAESKRIGDQEEQFEKPTRQTCQ 837

Query: 772  A--KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KG 815
                +L+  +D DG+   G  +   +       ++ D       T  R          + 
Sbjct: 838  GMRNALYDKLDDDGIISPGIRVSGDDVVIGKTITLPDNEDELEGTTKRYTKRDASTFLRN 897

Query: 816  SESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPF 875
            SE+  VD V + + NS+   +   IR R  R P IGDKF+SRHGQKG C   +   DMPF
Sbjct: 898  SETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPF 955

Query: 876  SGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGT 935
            +   G+ PD+IINPHA PSRMTI  L+E +  K  S  G+  DATPF ++V         
Sbjct: 956  T-CEGITPDIIINPHAIPSRMTIGHLIECLQGKVSSNKGEIGDATPFNDAVN-------- 1006

Query: 936  DESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQV 995
                  V ++  +L+  G+   G EV+Y+G  G ++  ++F+GP YYQRL+HMV DK   
Sbjct: 1007 ------VQKISSLLQEYGYQLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHS 1060

Query: 996  RSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSL 1055
            R+ G +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +RL   SD +   VC+ 
Sbjct: 1061 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNF 1120

Query: 1056 CGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELA 1115
            CG +  A   +                      C  C+    +  V +PY  + L  EL 
Sbjct: 1121 CGLIAIANLRN------------------NTFECKGCKNKTQISQVRLPYAAKLLFQELM 1162

Query: 1116 AMNI 1119
            AMNI
Sbjct: 1163 AMNI 1166


>gi|302780123|ref|XP_002971836.1| hypothetical protein SELMODRAFT_148107 [Selaginella moellendorffii]
 gi|300160135|gb|EFJ26753.1| hypothetical protein SELMODRAFT_148107 [Selaginella moellendorffii]
          Length = 1178

 Score =  367 bits (941), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 308/1107 (27%), Positives = 489/1107 (44%), Gaps = 147/1107 (13%)

Query: 71   FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSM 130
             G+ P+ML++  C L     + L  L E   + GGYFI+NG E+V    ++ ++    + 
Sbjct: 142  IGKVPIMLRSSYCTLYQNSDKDLTELGECPYDQGGYFIINGSEKV----LIAQEKMSTNH 197

Query: 131  VRSSFRDRREGYTDKAVVIRCVRKDQS--SVTLKLYYLLNGSVRLGFWLQGKEYL----- 183
            V   F+ R+         +R + + Q+  + ++ +  L     + G      +Y+     
Sbjct: 198  V-YVFKKRQPNKYAYVAEVRSMAESQNRPASSMFVRMLSRAGAKAG---SSGQYIRATLP 253

Query: 184  -----LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQD 238
                 +P+ +V +AL    D +I  H+  CYD              + E ++  L E   
Sbjct: 254  YIKQEIPIIVVFRALGFVADKDILEHI--CYD---------FSDTAMMELLRPSLEEA-- 300

Query: 239  LSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLND----NNDKFNLLI 294
              +  +   L +IG+    V  G+  E     A+ +++  +  H+         K     
Sbjct: 301  FVIQNQQVALDYIGKRGSTV--GVTREKRIKYAKDILQKEMLPHVGVGEYCETKKAYFFG 358

Query: 295  FMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENN 354
            +++ +L          D+ D   N+ + L G L+    ++      +  +  +Q  + +N
Sbjct: 359  YIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGSLFRQLFRKLTKDVRAYLQKCV-DN 417

Query: 355  GKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNF 414
            GK+    NLA   K      +K I + ++  L TG        +   RAG +    RL +
Sbjct: 418  GKEV---NLAYAVK------AKTITSGLKYSLATGNWGQANSGN--ARAGVSQVLNRLTY 466

Query: 415  LRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVAS 474
               +S  R ++      G      R+L    WG +CP  TP+G+ CGL+ ++        
Sbjct: 467  ASTLSHLRRLNSPIGREGRLLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMA---- 522

Query: 475  YYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEI 534
             Y + G+         + + V +      +  ++  +  P    + ++G  VG+    E 
Sbjct: 523  -YITVGSA-------ANPILVFLEEWSTENFEEISPAVIPNATKIFVNGAWVGI--HREP 572

Query: 535  EKVVAHLRRLK----VSAASVIPDDLEVGYVPL--SLGGAYPGLYLFTSPPKFVRPVRNI 588
            E +V  LR+L+    V+    +  D+ +  + L    G     L++       ++     
Sbjct: 573  EHLVKTLRQLRRQVDVNTEVGVVRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKSDIR 632

Query: 589  SLPSEESQN-----------IELIGPFEQ----VFMEIRCPDGGDGGRRNAFPAT--HEE 631
            +L  +E+             IE +   E+    + M I            A+  T  H E
Sbjct: 633  ALQQKEAGENGWHELVSKGFIEYVDTEEEETTMISMTISDLVNARLNPEEAYSDTYTHCE 692

Query: 632  IHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTP 691
            IHP+ +L V  ++ P+ DHNQSPRN YQ  M KQ MG  V   + R D   Y L  PQ P
Sbjct: 693  IHPSMILGVCGSIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKP 752

Query: 692  IVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETID 751
            +V T         + P G NAIVA+  Y+GY+ ED++I+N+SS+DRG      Y++   +
Sbjct: 753  LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSIFYRSYRDE 812

Query: 752  LSDDGNKVDRGQKLFRRNKDAKS-----LHSVIDSDGLP-----YVGQMIHPGEPYCSIY 801
                G  V   ++  R N++  +      +  +D DG+        G+ +  G+    + 
Sbjct: 813  EKKAGTLVK--EEFERPNRETTTGMRHGSYDKLDDDGIAPPGTRVSGEDVIIGKTTPLVQ 870

Query: 802  DKT-TNSWRTNSR------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKF 854
            D+T T + R + R      + SES  +D V +   N+  L +    R R  R P IGDKF
Sbjct: 871  DETGTQAQRYSKRDQSTCLRHSESGMIDQVLL-TTNADGL-RFVKTRVRSIRIPQIGDKF 928

Query: 855  SSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHG 914
            SSRHGQKG     +   DMPF+   G+ PD+I+NPHA PSRMTI  L+E +  K  +L G
Sbjct: 929  SSRHGQKGTIGMTYTQEDMPFTQ-EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAALMG 987

Query: 915  KFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCE 974
            K  DATPF +                 VD + + L  C +   G E +Y+G  G  L+  
Sbjct: 988  KEGDATPFTDVT---------------VDNISKALHKCNYQLRGFETMYNGHTGRRLSAM 1032

Query: 975  IFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAA 1034
            IFIGP YYQRL+HMV DK   R  G +  +TRQP +GR R GG+RFGEMERD ++AHGAA
Sbjct: 1033 IFIGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA 1092

Query: 1035 YLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVT--CHAC 1092
            + L +RL   SD +   VC  CG +  A                      KK T  C +C
Sbjct: 1093 HFLKERLFDQSDAYRVHVCEHCGLIAIANL--------------------KKNTFECRSC 1132

Query: 1093 QTSKGMETVAMPYVFRYLAAELAAMNI 1119
            +    +  V +PY  + L  EL AM I
Sbjct: 1133 KNKTEIVQVHIPYACKLLFQELMAMAI 1159


>gi|256073421|ref|XP_002573029.1| DNA-directed rna polymerase II subunit [Schistosoma mansoni]
          Length = 1304

 Score =  367 bits (941), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 310/1139 (27%), Positives = 493/1139 (43%), Gaps = 151/1139 (13%)

Query: 57   YLDAGSPVVRERFN---------FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYF 107
            Y+D    ++R+             G+ P+ML++  C L     + L  L E   + GGYF
Sbjct: 251  YVDVMKKIIRDEIEEEKPLEKKFIGKIPIMLRSTYCLLSVMSDRDLAELNECPLDPGGYF 310

Query: 108  ILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVR-KDQSSVTLKLYYL 166
            I+NG E+V     L  Q    +     F+ +   Y  K  +  C+    + + TL +  +
Sbjct: 311  IINGSEKV-----LIAQEKMATNTVYVFKQKDSKYAYKTEIRSCLEHSSRPASTLWINMM 365

Query: 167  LNGS----------VRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
              G            R+   L   +  +PV IV +AL    D +I  H+   +D+   +E
Sbjct: 366  ARGGKDGSKRATIGQRIVAILPYIKQEIPVLIVFRALGFVADRDILEHIIYDFDDTEMRE 425

Query: 217  --KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETV 274
              K ++    V +  K+                L  IG   +    G+  E     A+ +
Sbjct: 426  MIKPSLDDAFVIQEQKV---------------ALNFIGS--RGARPGVTKEKRIKYAKEI 468

Query: 275  IRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITI 330
            ++     H+  ++     K   L +M+ +L          D+ D   N+ + L G L+  
Sbjct: 469  LQKETLPHVGVSDFCETRKAYFLGYMVHRLLLAALKRRDVDDRDHYGNKRLDLAGPLLAF 528

Query: 331  YLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGR 390
              +    + L K  +L   +  + GK F      N++  +    S+ I   ++  L TG 
Sbjct: 529  LFRGLFRN-LTKEIRLYAQKFIDKGKDF------NLELAIR---SQIITDGLKYSLATGN 578

Query: 391  LATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLC 450
               Q   + Q R G +    RL F   +S  R ++      G +    R+L    WG +C
Sbjct: 579  WGDQKKAN-QARPGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLARPRQLHNTLWGMIC 636

Query: 451  PVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVK 510
            P  TP+G   GL+ ++     ++                + IL  L    M  +L ++  
Sbjct: 637  PAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEFLEEWSM-ENLEEIAP 684

Query: 511  SGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAASVIPDDLEVGYVPLS 564
            S       + ++G  VG+   S  + ++  LR+L+      VS  S+I D  +      +
Sbjct: 685  SAIGKTCKIFVNGCWVGI--HSSPDHLMGTLRKLRRQVDVIVSEVSMIRDYRDQEIRIYT 742

Query: 565  LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------IELIGPFEQ-VFMEI 611
              G      +     K +    +I L  +++ N            +E I   E+   M  
Sbjct: 743  DAGRICRPLVIVEKGKLLLKRSHIELLKDKAYNRYSWQDLVLSGVVEYIDTLEEETVMIA 802

Query: 612  RCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSV 671
              P             TH EIHP+ +L + A++ P+ DHNQSPRN YQ  M KQ MG  +
Sbjct: 803  MGPAEMQAAVNYCKTHTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVYI 862

Query: 672  QALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILN 731
                 R D     L  PQ P+V T +       E P G NAIVA+  YTGY+ ED++I+N
Sbjct: 863  SNFHTRMDTLANVLYYPQKPLVATRSMEYLRFRELPAGINAIVAIATYTGYNQEDSVIIN 922

Query: 732  KSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAK------SLHSVIDSDGLP 785
            +S++ RG    + Y+T     +  G  +   +++F +           +++  +D DGL 
Sbjct: 923  ESAIQRGFFRSEFYRTYKDQETRHGMDL---EEVFEKPNPQNCQGMRHAIYDKLDDDGLI 979

Query: 786  YVGQMIHPGEPYCSIY-------DKTTNSWRTNSRKG-------SESVFVDYVAVDMKNS 831
              G  +   +             D+     R  +++        SE   VD V V   N 
Sbjct: 980  APGTRVSGDDVLIGKTITLPENEDEMEGGQRRYTKRDASVFMRRSEYGIVDQVMVTWNNE 1039

Query: 832  KNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHA 891
             N  +   +R R T+ P +GDKF+SRHGQKG C   +   DMPF+   G+ PD+IINPHA
Sbjct: 1040 GN--KFCKVRVRTTKAPQVGDKFASRHGQKGTCGIRYRQEDMPFT-CEGITPDIIINPHA 1096

Query: 892  FPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRT 951
             PSRMTI  L+E +  K  +  G+  DATPF ++V               V ++  +L+ 
Sbjct: 1097 IPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVN--------------VRKISLLLQE 1142

Query: 952  CGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKG 1011
             G+ + G E++Y+G  G +L  +IF+GP YYQRL+HMV DK   RS G +  + RQP++G
Sbjct: 1143 YGYQHTGNEIMYNGFTGRKLNSQIFLGPTYYQRLKHMVDDKIHSRSRGPVQILNRQPMEG 1202

Query: 1012 RKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRA 1071
            R R GG+RFGEMERD  +AHGAA  L +RL   SD +   VC+LCG +  A   H +   
Sbjct: 1203 RSRDGGLRFGEMERDCQIAHGAAQFLRERLFFASDPYQVYVCNLCGLIAIA---HQRN-- 1257

Query: 1072 IREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGDGAT 1130
                         K   C +C+ +  +  V +PY  + L  EL +M+I   + +   A 
Sbjct: 1258 -------------KTYECRSCKNTTQISLVKLPYACKLLFQELMSMSIAPRMMINSPAA 1303


>gi|360044299|emb|CCD81846.1| putative dna-directed rna polymerase II subunit [Schistosoma mansoni]
          Length = 1158

 Score =  367 bits (941), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 309/1128 (27%), Positives = 490/1128 (43%), Gaps = 151/1128 (13%)

Query: 57   YLDAGSPVVRERFN---------FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYF 107
            Y+D    ++R+             G+ P+ML++  C L     + L  L E   + GGYF
Sbjct: 105  YVDVMKKIIRDEIEEEKPLEKKFIGKIPIMLRSTYCLLSVMSDRDLAELNECPLDPGGYF 164

Query: 108  ILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVR-KDQSSVTLKLYYL 166
            I+NG E+V     L  Q    +     F+ +   Y  K  +  C+    + + TL +  +
Sbjct: 165  IINGSEKV-----LIAQEKMATNTVYVFKQKDSKYAYKTEIRSCLEHSSRPASTLWINMM 219

Query: 167  LNGS----------VRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
              G            R+   L   +  +PV IV +AL    D +I  H+   +D+   +E
Sbjct: 220  ARGGKDGSKRATIGQRIVAILPYIKQEIPVLIVFRALGFVADRDILEHIIYDFDDTEMRE 279

Query: 217  --KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETV 274
              K ++    V +  K+                L  IG   +    G+  E     A+ +
Sbjct: 280  MIKPSLDDAFVIQEQKV---------------ALNFIGS--RGARPGVTKEKRIKYAKEI 322

Query: 275  IRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITI 330
            ++     H+  ++     K   L +M+ +L          D+ D   N+ + L G L+  
Sbjct: 323  LQKETLPHVGVSDFCETRKAYFLGYMVHRLLLAALKRRDVDDRDHYGNKRLDLAGPLLAF 382

Query: 331  YLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGR 390
              +    + L K  +L   +  + GK F      N++  +    S+ I   ++  L TG 
Sbjct: 383  LFRGLFRN-LTKEIRLYAQKFIDKGKDF------NLELAIR---SQIITDGLKYSLATGN 432

Query: 391  LATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLC 450
               Q   + Q R G +    RL F   +S  R ++      G +    R+L    WG +C
Sbjct: 433  WGDQKKAN-QARPGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLARPRQLHNTLWGMIC 490

Query: 451  PVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVK 510
            P  TP+G   GL+ ++     ++                + IL  L    M  +L ++  
Sbjct: 491  PAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEFLEEWSM-ENLEEIAP 538

Query: 511  SGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAASVIPDDLEVGYVPLS 564
            S       + ++G  VG+   S  + ++  LR+L+      VS  S+I D  +      +
Sbjct: 539  SAIGKTCKIFVNGCWVGI--HSSPDHLMGTLRKLRRQVDVIVSEVSMIRDYRDQEIRIYT 596

Query: 565  LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------IELIGPFEQ-VFMEI 611
              G      +     K +    +I L  +++ N            +E I   E+   M  
Sbjct: 597  DAGRICRPLVIVEKGKLLLKRSHIELLKDKAYNRYSWQDLVLSGVVEYIDTLEEETVMIA 656

Query: 612  RCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSV 671
              P             TH EIHP+ +L + A++ P+ DHNQSPRN YQ  M KQ MG  +
Sbjct: 657  MGPAEMQAAVNYCKTHTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVYI 716

Query: 672  QALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILN 731
                 R D     L  PQ P+V T +       E P G NAIVA+  YTGY+ ED++I+N
Sbjct: 717  SNFHTRMDTLANVLYYPQKPLVATRSMEYLRFRELPAGINAIVAIATYTGYNQEDSVIIN 776

Query: 732  KSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAK------SLHSVIDSDGLP 785
            +S++ RG    + Y+T     +  G  +   +++F +           +++  +D DGL 
Sbjct: 777  ESAIQRGFFRSEFYRTYKDQETRHGMDL---EEVFEKPNPQNCQGMRHAIYDKLDDDGLI 833

Query: 786  YVGQMIHPGEPYCSIY-------DKTTNSWRTNSRKG-------SESVFVDYVAVDMKNS 831
              G  +   +             D+     R  +++        SE   VD V V   N 
Sbjct: 834  APGTRVSGDDVLIGKTITLPENEDEMEGGQRRYTKRDASVFMRRSEYGIVDQVMVTWNNE 893

Query: 832  KNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHA 891
             N  +   +R R T+ P +GDKF+SRHGQKG C   +   DMPF+   G+ PD+IINPHA
Sbjct: 894  GN--KFCKVRVRTTKAPQVGDKFASRHGQKGTCGIRYRQEDMPFT-CEGITPDIIINPHA 950

Query: 892  FPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRT 951
             PSRMTI  L+E +  K  +  G+  DATPF ++V               V ++  +L+ 
Sbjct: 951  IPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVN--------------VRKISLLLQE 996

Query: 952  CGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKG 1011
             G+ + G E++Y+G  G +L  +IF+GP YYQRL+HMV DK   RS G +  + RQP++G
Sbjct: 997  YGYQHTGNEIMYNGFTGRKLNSQIFLGPTYYQRLKHMVDDKIHSRSRGPVQILNRQPMEG 1056

Query: 1012 RKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRA 1071
            R R GG+RFGEMERD  +AHGAA  L +RL   SD +   VC+LCG +  A   H +   
Sbjct: 1057 RSRDGGLRFGEMERDCQIAHGAAQFLRERLFFASDPYQVYVCNLCGLIAIA---HQRN-- 1111

Query: 1072 IREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
                         K   C +C+ +  +  V +PY  + L  EL +M+I
Sbjct: 1112 -------------KTYECRSCKNTTQISLVKLPYACKLLFQELMSMSI 1146


>gi|399216789|emb|CCF73476.1| unnamed protein product [Babesia microti strain RI]
          Length = 1146

 Score =  366 bits (940), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 319/1142 (27%), Positives = 522/1142 (45%), Gaps = 147/1142 (12%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRER-FNFGQFPVMLKTRRCHLQGADSQKLVSL 96
            CR   ++Y+  +  DVE+     GS ++R++    G+ PVMLK+  C L+G D  +L  L
Sbjct: 80   CRIRDLTYSAPIYVDVEYT---RGSDIIRKQNAEIGRLPVMLKSAICSLEGKDELELQKL 136

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNY-----PMSMVRSSFRDRREGYTDKAVVIR- 150
             E   + GGYFI+ G E+V  + IL    Y       S +  +F ++   Y    +VI+ 
Sbjct: 137  GECPHDPGGYFIIKGSEKV--TFILWTNIYYFFKLMFSKLIQTFINKSYRYYGFVIVIQE 194

Query: 151  CVRKDQSSVTLKLYYLLNGSV---------RLGFWLQG-KEYL--------LPVGIVLKA 192
             + K++  V   + + +  ++         R    L+  K YL        LP+ I+  A
Sbjct: 195  QLSKNRILVERDVKHNICATLTSATAESKSRASVVLKSEKIYLRHNSFTDDLPISIIFMA 254

Query: 193  LVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIG 252
            +   +  EI   +   +   Y +      SPL++  ++ I   +  L + +R++      
Sbjct: 255  MGIESTQEIAEIIGAGHS--YPRSVYLSLSPLIANDIRTIKDAL--LFIGSRIRSRIMAR 310

Query: 253  EHFQPVIDGLQSESYYAVAET--VIRDYIFVHL-------NDNNDKFNLLIFMLQKLFSL 303
              F PV + +       + E   ++   I  H+        D ++K   L  M++++ + 
Sbjct: 311  GFFAPVKEKVAKSDTVIIKEAYDILDRVILPHVPMKKSKSRDYSEKITCLALMVRRVLNC 370

Query: 304  VDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNL 363
                +  D+ D   N+ + L G L++I  ++  + ++ + KK ++  +E   +     + 
Sbjct: 371  AYKDAPLDDKDHYGNKRLELAGQLVSILFEDLYKKFIFQVKKQVEQSLERYIQSRSSGSD 430

Query: 364  ANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRA 423
                      P   I   +++ L TG    +      +R+G T    RLN++  I     
Sbjct: 431  TTYPDTFRNLPHDIITRGMQSSLSTGNWNIKRFK--MERSGVTQILSRLNYMATIGMMMR 488

Query: 424  VHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIR 483
            ++      G + +  R L P  WGF+CP  TP+GE CGL+ ++     V +  + +    
Sbjct: 489  INSQFE-KGRKVSGPRALSPSQWGFICPCDTPEGESCGLVKNLALATHVTNDENPQ---- 543

Query: 484  DFSKMRTSILRVLIGVGMIPSLPKLVKSGP---PAVLSVLLDGRVVGVIPSSEIEKVVAH 540
                    + R+L  +G+ PS  K V +     P    V L+G +VGV  ++E+  ++ +
Sbjct: 544  -------YLERLLYSLGLFPS--KYVATRDLFDPRNWLVFLNGLLVGVHSNAEL--LMDN 592

Query: 541  LRRLKVSA-----ASVIPDDLEVGYVPLSLGG--AYPGLYLFTSPPKFVRPVRNISLPSE 593
            +R+L+ +       S+  DD  V Y+  S GG    P + + +   K    + +  +  +
Sbjct: 593  IRKLRRAGKIGEFVSIYCDDSSV-YIS-SDGGRVCRPLIIVESGKSKLTNEILDQVIAGK 650

Query: 594  ESQN-------IELIGPFEQVFM-------EIRCPDGGDGGRRNAFPATHEEIHPTGMLS 639
               N       +E I   E+  +       EI C              TH E+ P  +L 
Sbjct: 651  LKLNQLLKGGILEWIDVNEENNLLIATKPNEITCK------------TTHLELDPFTILG 698

Query: 640  VVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKF-RADQKLYHLQTPQTPIVRTNTY 698
            +++ L PY  HNQSPRN YQC M KQ +G SV   +F R D  L+ L  PQ P+V T T 
Sbjct: 699  IISGLIPYPHHNQSPRNTYQCGMGKQAIG-SVGYNQFSRCDTILHTLVYPQKPLVTTRTV 757

Query: 699  TKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNK 758
                 ++ P G NAIVAV++Y GY++EDA+++NK+SV+RG   G+    + + +      
Sbjct: 758  KLTAFEKLPAGQNAIVAVMSYGGYEIEDAIVINKASVERGF--GRCISMKRMSVELKKYH 815

Query: 759  VDRGQKLFRRNKDAKSL-HSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSE 817
                      N+ A ++ +  I+SDG+  VG  +   +    I  K T   +    K  +
Sbjct: 816  TGSSDIAAPTNQLASNINYQGIESDGIVRVGHELSNDQ---IIVSKITQGQKITPVKYKQ 872

Query: 818  SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
            +       V + ++ +  +   +  R  R+P +GDKFSSRHGQKGV   +    D+PFS 
Sbjct: 873  NTSSHLDRVIVTDTTSGCRVYKMMLRKFRSPELGDKFSSRHGQKGVVGLIANQEDLPFSS 932

Query: 878  VTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDE 937
              G  PDLI+NPH FPSRMT+  LLE VA+K     G  +D T FA+             
Sbjct: 933  -NGWVPDLIMNPHGFPSRMTVGKLLELVASKATVCTGIELDGTAFADPQ----------- 980

Query: 938  SKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRS 997
                ++ + ++L   GF+  G E+LYSG  G  +   IF GP+YYQ+L+HMV DK   R 
Sbjct: 981  ----MESIWKILLQHGFSPSGKELLYSGFTGEAIETYIFTGPIYYQKLKHMVQDKIHARG 1036

Query: 998  TGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCG 1057
             G    +TRQP +GR + GG+R GEMERD L+++G + L+ +RL   SD     VC+ CG
Sbjct: 1037 RGPRQLLTRQPTEGRSKDGGLRLGEMERDCLISYGTSNLILERLMLSSDVCRVMVCNKCG 1096

Query: 1058 SVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAM 1117
             +                          K  C  C+ S     + MPY  + L  EL  M
Sbjct: 1097 LI------------------------GYKSDCLYCKLSNSCVPIHMPYACKLLFHELQTM 1132

Query: 1118 NI 1119
            NI
Sbjct: 1133 NI 1134


>gi|221059854|ref|XP_002260572.1| DNA-directed RNA polymerase [Plasmodium knowlesi strain H]
 gi|193810646|emb|CAQ42544.1| DNA-directed RNA polymerase, putative [Plasmodium knowlesi strain H]
          Length = 1401

 Score =  366 bits (940), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 330/1204 (27%), Positives = 519/1204 (43%), Gaps = 232/1204 (19%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRER-FNFGQFPVMLKTRRCHLQGADSQKLVSL 96
            CRQ  ++Y+  +  DVE+     GS ++R+     G+ PVML++  C L     ++L+ L
Sbjct: 299  CRQRDLTYSAPIYVDVEYV---KGSNIIRKNNVEIGRLPVMLRSDICILNNKSEEELMKL 355

Query: 97   KEEAAEMGGYFILNGLERVF-RSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
             E   + GGYFI+ G ERV      L K    + M      D +              K 
Sbjct: 356  GECPYDPGGYFIVKGTERVLLMQEQLSKNRIIVEM------DIKHNICATITSTTAESKS 409

Query: 156  QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVG--IVLKALVDTNDLEIFNHLTCCYDEKY 213
            + ++  K   L         +L+   ++  +G  I+L+A+   +D EIF  +        
Sbjct: 410  RCAIVYKNNKL---------YLKHNSFIEDIGVCIILRAMGYESDQEIFQMIGS------ 454

Query: 214  KKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAET 273
               +  +   L+S      L ++   ++ T L  L +IG+  +P +  L    + ++ E 
Sbjct: 455  --HRNYLNGILLS------LYDLYSENIKTNLDALLYIGKKIRPRL--LAKGFFSSMKEK 504

Query: 274  VIRD--------------YIFVHLNDNN-----DKFNLLIFMLQKLFSLVDHTSVSDNPD 314
             +++               +  H+   N     +K   +  M++++    ++ +  D+ D
Sbjct: 505  QVKNEKDIIEEGLDFLSRVLLSHIQQKNKYDFRNKARCICLMIRRVLDSANNKNELDDKD 564

Query: 315  SLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIE-----NNGKKFDFFNLAN--IK 367
               N+ + L G LI++  ++  + +    KK I   +      N   K  +    N    
Sbjct: 565  YYGNKRLELAGQLISLLFEDLYKRFYFTLKKQIDQTLSKYMQSNYTSKLKYSGNVNETYP 624

Query: 368  KVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRG 427
             V    P   I   ++  + TG    +      +++G +    RL+F+  I     ++  
Sbjct: 625  DVFRSLPKDIITRGMQAAISTGNWNIKRFK--MEKSGVSQVLSRLSFIACIGMMTRLNSQ 682

Query: 428  ASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSK 487
                G + +  R L P  WG LCP  TP+GE CGL+ ++     V +  D+  N      
Sbjct: 683  FE-KGRKVSGPRALQPSQWGVLCPCDTPEGESCGLVKNLALMTHVTN--DNENN------ 733

Query: 488  MRTSILRVLIGVGMIPSLP----KLVKSGPPAVLSVLLDGRVVGVIPSSEI-EKVVAHLR 542
                ++ +L  +G+  S      ++ K G   +  V+ +G ++GV     I  + +  LR
Sbjct: 734  --EHLIEILYTLGVEDSDSLTGEEMYKEG---IFFVIFNGILLGVHKKPRIFMRRIRCLR 788

Query: 543  RL-KVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP---VRN----------I 588
            R  K+     I D+             +  +Y+ T   +  RP   V N          +
Sbjct: 789  RYGKIGQFVSIYDNF-----------LHKAIYISTDGGRLCRPLIIVENGKSKLTQEHIL 837

Query: 589  SLPSE--------ESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSV 640
            SL +         +S  IE I   EQ  + I   +        +   +H EI P  +L V
Sbjct: 838  SLENGTINFFDLLKSSVIEWIDVNEQNNLLIALNESDI-----SINTSHLEIDPLTILGV 892

Query: 641  VANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTK 700
            VA L PY +HNQSPRN YQC M KQ +G        R D  LY L  PQ P+V++ T   
Sbjct: 893  VAGLIPYPNHNQSPRNTYQCAMGKQAIGAIGYNQFVRCDTLLYLLVYPQKPLVKSKTIEF 952

Query: 701  YGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDL------SD 754
               ++ P G NAIVAV+++ GYD+EDA+++NKSS+DRG       +   ++L      S+
Sbjct: 953  INFEKLPAGQNAIVAVMSFGGYDIEDAIVMNKSSIDRGFGRCMSLRKHAVELKKYFNGSN 1012

Query: 755  D---------------------------------------------GNKVDRGQKLFRRN 769
            D                                             G  VD  +K    N
Sbjct: 1013 DLVLPSPLAISKMQERQEKRRQEKLSQSQDKQRQAKEERDHVENGAGTNVDEQKKF--HN 1070

Query: 770  KDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYD--------KTTNSWRTNSRKGSE---- 817
            K+ K  H+ +D DG+  +G ++  G+ Y + Y         K  +    N  K +E    
Sbjct: 1071 KEIKKYHA-LDMDGVVSIGYLLKEGQVYINKYSPRNVKDHVKDISKIDLNDLKANEIKYK 1129

Query: 818  SVFVDYV--AVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPF 875
            SV+  Y+   +  +N++ L +   I  R TR P +GDKFSSRHGQKGV   L    DMPF
Sbjct: 1130 SVYPSYIDKIIFTENAEGL-KIYKIIMRQTRLPELGDKFSSRHGQKGVVGLLVNQEDMPF 1188

Query: 876  SGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGT 935
            +  +G+ PDLI+NPH FPSRMT+  LLE VA+K   L G+    + F             
Sbjct: 1189 TE-SGICPDLIMNPHGFPSRMTVGKLLELVASKSAVLDGELKYGSIF------------- 1234

Query: 936  DESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQV 995
              S +  +E+  +L   GFN    E+LYSG+ G  L   IF+GP+YYQ+L+HMV DK   
Sbjct: 1235 --SGTPFEEMASILFKYGFNCSSKELLYSGLTGEPLETYIFMGPIYYQKLKHMVQDKIHA 1292

Query: 996  RSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSL 1055
            R+ G    +TRQP +GR + GG+R GEMERD L+A+G + LL +RL   SD     +C  
Sbjct: 1293 RARGPRQLLTRQPTEGRSKEGGLRLGEMERDCLIAYGVSNLLLERLMLSSDVCDVYICED 1352

Query: 1056 CGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELA 1115
            CG +   T+                        C  CQ       V MPY  + L  EL 
Sbjct: 1353 CGMMGYDTY------------------------CTFCQKCDKNALVKMPYACKLLFQELQ 1388

Query: 1116 AMNI 1119
             MN+
Sbjct: 1389 TMNV 1392


>gi|195064711|ref|XP_001996619.1| GH19704 [Drosophila grimshawi]
 gi|193892751|gb|EDV91617.1| GH19704 [Drosophila grimshawi]
          Length = 1175

 Score =  366 bits (940), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 323/1162 (27%), Positives = 512/1162 (44%), Gaps = 178/1162 (15%)

Query: 34   MFDHCRQAKISYTGKLMADV-EFQYLDAGSPV--VRERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+ + + ++   PV    ++   G+ P+ML++  C L     
Sbjct: 109  MPNEARLRNLTYSAPLYVDITKTKNVEGLDPVETQHQKTFIGKIPIMLRSTYCLLSQLTD 168

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  Y  K  +  
Sbjct: 169  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGK--YAFKTEIRS 223

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  +  GS  +     G+  +         +P+ IV +AL    D +
Sbjct: 224  CLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 283

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAE---VQDLSLTTRLQCLQHIGEHFQP 257
            I  H+   +D+           P + E VK  L E   VQ+ ++      L  IG   + 
Sbjct: 284  ILEHIIYDFDD-----------PEMMEMVKPSLDEAFVVQEQNVA-----LNFIGA--RG 325

Query: 258  VIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNP 313
               G+  +     A+ +++  +  H+  ++     K   L +M+ +L          D+ 
Sbjct: 326  ARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDR 385

Query: 314  DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKN 373
            D   N+ + L G L+    +   ++ +++ +   Q  I+  GK F      N++  ++ N
Sbjct: 386  DHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDR-GKDF------NLELAIKTN 438

Query: 374  PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
                I   +   L TG    Q     Q RAG +    RL F   +S  R V+      G 
Sbjct: 439  I---ITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG- 493

Query: 434  RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
            +    R+L    WG LCP  TP+G   GL+ ++     ++                + IL
Sbjct: 494  KLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPIL 542

Query: 494  RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VS 547
              L    M  +L ++  S       + ++G  VG+    + E+++A LR+L+      VS
Sbjct: 543  EFLEEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVS 599

Query: 548  AASVIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------------RNISLPSE 593
              S+I D  D E+               ++T   +  RP+             ++ +  E
Sbjct: 600  EVSMIRDIRDREI--------------RIYTDAGRICRPLLIVENGTLLLKKTHVEMLKE 645

Query: 594  ESQN------------IELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGML 638
               N            +E I   E+   M    P      +  A+  T  H EIHP  +L
Sbjct: 646  RDYNNYSWQVLVASGVVEYIDTLEEETVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMIL 705

Query: 639  SVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTY 698
             V A++ P+ DHNQSPRN YQ  M KQ MG  +     R D   + L  P  P+V T + 
Sbjct: 706  GVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSM 765

Query: 699  TKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-------ETID 751
                  E P G N+IVA+L YTGY+ ED++ILN S+V+RG      Y++          D
Sbjct: 766  EYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSENKRVGD 825

Query: 752  LSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGL-----------PYVGQMIHPGEPYCSI 800
              ++  K  RG     RN     L    D DG+             +G+ I   E    +
Sbjct: 826  QEENFEKPHRGTCQGMRNAHYDKL----DDDGIIAPGIRVSGDDVVIGKTITLPENDDEL 881

Query: 801  YDKTTNSWRTNSR---KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSR 857
               T    + ++    + SE+  VD V + + NS+   +   IR R  R P IGDKF+SR
Sbjct: 882  DSNTKRFAKRDASTFLRNSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASR 939

Query: 858  HGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFM 917
            HGQKG C   +   DM F+   G+ PD+IINPHA PSRMTI  L+E +  K GS  G+  
Sbjct: 940  HGQKGTCGIQYRQEDMAFT-CEGLAPDIIINPHAIPSRMTIGHLIECLQGKLGSNKGEIG 998

Query: 918  DATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFI 977
            DATPF ++V               V ++   L+  G++  G EV+Y+G  G ++  ++F+
Sbjct: 999  DATPFNDAVN--------------VQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFL 1044

Query: 978  GPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLL 1037
            GP YYQRL+HMV DK   R+ G +  + RQP++GR R GG+RFGEMERD  ++HGAA  L
Sbjct: 1045 GPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFL 1104

Query: 1038 HDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKG 1097
             +RL   SD +   +C+ CG +  A   +                      C  C+    
Sbjct: 1105 RERLFEVSDPYRVHICNFCGLIAIANLRN------------------NTFECKGCKNKTQ 1146

Query: 1098 METVAMPYVFRYLAAELAAMNI 1119
            +  V +PY  + L  EL +MNI
Sbjct: 1147 ISQVRLPYAAKLLFQELMSMNI 1168


>gi|18312085|ref|NP_558752.1| DNA-directed RNA polymerase subunit B [Pyrobaculum aerophilum str.
            IM2]
 gi|18159514|gb|AAL62934.1| DNA-directed RNA polymerase subunit B (rpoB) [Pyrobaculum aerophilum
            str. IM2]
          Length = 1127

 Score =  366 bits (940), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 275/850 (32%), Positives = 410/850 (48%), Gaps = 112/850 (13%)

Query: 311  DNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVM 370
            D+ D + N+ + L G L+T   +  L+ +L++ K  ++           ++    I    
Sbjct: 354  DDKDHVGNKRVRLVGDLMTQLFRTVLKQFLQELKSQLEK----------YYARGRI---- 399

Query: 371  EKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASF 430
               P  Q     + + +  R A  TG  +  + G +   +R N+L  +S+ R V    S 
Sbjct: 400  ---PHIQTIVRPDIITERVRQALATGNWVGGKTGVSQILDRTNYLSTLSYLRRVVSSLS- 455

Query: 431  AGLRTT---SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSK 487
               RT      R L P  WG LC V TP+G+  GL+ ++     + +  D          
Sbjct: 456  ---RTQPHFEARDLHPTQWGRLCAVETPEGQNVGLVKNLALLAEITTGVDE--------- 503

Query: 488  MRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPS-SEIEKVVAHLRRLKV 546
                +  +L  +G+IP L K  + G      V L+GR++GV P+  E+ K V  LRR   
Sbjct: 504  --GEVEHMLYNMGVIPIL-KAREEGVSGA-EVYLNGRLIGVHPNPEELAKTVRGLRR--- 556

Query: 547  SAASVIPDDLEV----GYVPLSLGGAY---PGLYLFTSPPKFVRP-VRNISLPSEESQNI 598
                 I D++ +    G V ++  G     P L +     K  R  V  +        ++
Sbjct: 557  --QGKISDEINIAVINGTVYVNCDGGRIRRPLLVVENGKLKLTREIVEKVKRGDLTWDDL 614

Query: 599  ELIGPFEQVFM-EIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNM 657
              +G  E +   E          R N    TH EI P+ +L  +A++ PY +HNQSPRN 
Sbjct: 615  VKMGVVEYLDADEEENAHIATDPRGNLTNYTHVEIIPSSILGAIASIIPYIEHNQSPRNQ 674

Query: 658  YQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVL 717
            Y+  MAKQ++G       ++ D + + L  P+ PIV T      G  + P G NA+VA+L
Sbjct: 675  YEAAMAKQSLGLPQSNFLYKLDSRGHMLYYPERPIVTTRGLELIGYSKRPAGQNAVVALL 734

Query: 718  AYTGYDMEDAMILNKSSVDRGMCHGQIYQT-------------ETIDLSDDGNKVDRGQK 764
             YTGY++EDA+ILNK+SV+RGM     Y+T             + I++ D   K  RG +
Sbjct: 735  TYTGYNIEDAVILNKASVERGMFRSVFYRTYETEEQKYPGGEEDRIEIPDSSVKGYRGPE 794

Query: 765  LFRR-NKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNS----RKGSESV 819
             +   ++D  +   V  S     +G+   P   Y ++  +     R ++    R+G + +
Sbjct: 795  AYSHLDEDGIAPPEVYVSSNEVLIGKT-SPPRFYTTLEAERILKERRDASVAVRRGEKGI 853

Query: 820  FVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVT 879
             VD V +      N  +   +R R  R P +GDKF+SRHGQKGV   L    DMPF+   
Sbjct: 854  -VDKVIITESPEGN--KLVKVRLRELRVPELGDKFASRHGQKGVVGMLLRQEDMPFTE-D 909

Query: 880  GMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESK 939
            G+ PD+I+NPHA PSRMT+A LLES+A K G+  G+ +DATPF           G  E  
Sbjct: 910  GIVPDIIVNPHALPSRMTVAQLLESIAGKLGASTGQLIDATPFE----------GVKE-- 957

Query: 940  SLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTG 999
               ++L ++L   G+ + G EV+YSG+ G  L  +IFIG VYYQ+L HMV+DK   R+ G
Sbjct: 958  ---EDLRKLLLKLGYKWDGKEVMYSGITGERLVADIFIGIVYYQKLHHMVADKIHARARG 1014

Query: 1000 TMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCG-- 1057
             +  +TRQP +GR R GG+R GEMERD L+AHGA+ LLH+RL   SD +V  VC LCG  
Sbjct: 1015 PVQILTRQPTEGRSREGGLRLGEMERDVLIAHGASALLHERLVESSDKYVMYVCELCGLP 1074

Query: 1058 SVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAM 1117
            + L A    P+                    C     +     V +PY F+ L  EL A+
Sbjct: 1075 AYLDAKSNKPK--------------------CPIHGDTGQFAKVVVPYAFKLLLQELIAL 1114

Query: 1118 NIKITLQLGD 1127
             I   L+L +
Sbjct: 1115 GIYPKLELSE 1124



 Score = 49.7 bits (117), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 1/62 (1%)

Query: 57  YLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVF 116
           Y+D   P   E F  G+ P+M+K++RC+L      +     E+  + GGYFI+NG ERV 
Sbjct: 117 YVD-DEPYATETFYIGELPIMVKSKRCNLTRLRPSEYAKRFEDPQDFGGYFIINGSERVI 175

Query: 117 RS 118
            S
Sbjct: 176 IS 177


>gi|146302818|ref|YP_001190134.1| DNA-directed RNA polymerase subunit B [Metallosphaera sedula DSM
            5348]
 gi|145701068|gb|ABP94210.1| DNA-directed RNA polymerase, subunit B' / DNA-directed RNA
            polymerase, subunit B' [Metallosphaera sedula DSM 5348]
          Length = 1124

 Score =  366 bits (940), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 328/1201 (27%), Positives = 509/1201 (42%), Gaps = 190/1201 (15%)

Query: 13   RELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRE----- 67
            R LVR H++SF+  +   L E+ D   +      G     +    +  G P VRE     
Sbjct: 18   RGLVRQHLDSFNDFIKNKLQEIIDEQGEIITEIPG---LKIRLGKIRVGKPRVREADKGD 74

Query: 68   -----------------------------------RFNFGQFPVMLKTRRCHLQGADSQK 92
                                                 + G  P+MLK+           K
Sbjct: 75   KEITPMEARLRNLTYAAPIFLTMTPVENNIEGDPTEVHIGDIPIMLKSIADPTSEFSQDK 134

Query: 93   LVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCV 152
            LV + E+  + GGYFI+NG ERV    I+ +++   + V +         T  A +I   
Sbjct: 135  LVEIGEDPKDPGGYFIINGSERV----IVTQEDLATNRVLTDVGKAGSNVTHTAKIISST 190

Query: 153  RKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEK 212
               +  +T++   L + ++ + F        +P  I+++AL    D +I   L    D +
Sbjct: 191  SGYRVPITIE--RLKDSTIHVSF--PSAPGRIPFAILMRALGVETDEDI--TLAVSLDPQ 244

Query: 213  YKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAE 272
             + E              ++ +  Q  S++++   L  IG     V  G + E     AE
Sbjct: 245  IQNE--------------LLPSLEQASSISSKEDALDFIGNR---VAIGQKREMRIQKAE 287

Query: 273  TVIRDYIFVHLNDNND----KFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
             ++  Y   H+  N      K   L F + KL  L       D+ D   N+ + L G L 
Sbjct: 288  QILDKYFLPHIGTNPSDRVAKAYYLAFAVSKLIELYLGRREPDDKDHYANKRLKLAGDLF 347

Query: 329  TIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKT 388
                +          K  ++D +         F L    KV  +  +       + + + 
Sbjct: 348  ASLFRVAF-------KAFVKDLV---------FQLEK-SKVRGRRLAINALVRPDIISER 390

Query: 389  GRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFA-GLRTTSVRKLLPESWG 447
             R A  TG  +  R G +   +R N+L  +S  R V   +S A G      R L    WG
Sbjct: 391  IRHALATGNWVGGRTGVSQLLDRTNWLSMLSHLRRVV--SSLARGQPNFEARDLHGTQWG 448

Query: 448  FLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP--SL 505
             +CP  TP+G   GL+ ++    +++   + +           S+ R L  +G++P    
Sbjct: 449  RMCPFETPEGPNSGLVKNIALLAQISVGINEK-----------SLERTLYNLGVVPIDDA 497

Query: 506  PKLVKSGP------PAVLSVLLDGRVVGVIPSS-EIEKVVAHLRRLKVSAASVIPDDLEV 558
             K VKS             V+L+GR++G  P   E+ + +   RR        + D++ V
Sbjct: 498  IKKVKSEEGQSENYQTWSKVILNGRLIGYYPDGRELAEKIRESRR-----EGELSDEVNV 552

Query: 559  GYVPLSLGGAYPGLYLFTSPPKFVRPVRNIS--LPSEESQNIELIGP----FEQVFMEIR 612
             Y   ++   +  +Y+ +   +  RP+  +    P    ++IE +      F+ +  E +
Sbjct: 553  SY---NITETFNEVYINSDSGRVRRPLIVVKHGKPLVTKEDIENLKKGKITFDTLVKEGK 609

Query: 613  CPDGGDGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQM 662
                      NA+ A          TH EI    +L + A++ PY +HNQSPRN YQ  M
Sbjct: 610  IEFLDAEEEENAYIALEPKDVTKDHTHLEIWAPAILGITASIIPYPEHNQSPRNTYQSAM 669

Query: 663  AKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGY 722
            AKQ +G      + R D + + L  PQ PIV+T      G  E P G NAI A+++YTGY
Sbjct: 670  AKQALGLYAANYQIRTDTRAHLLHYPQKPIVQTRALEAIGYTERPAGNNAIFALMSYTGY 729

Query: 723  DMEDAMILNKSSVDRGMCHGQIY-------------QTETIDLSDDGNKVDRGQKLFRRN 769
            +MEDA+I+NKSSVDRGM     +             Q + I L + G +  +G+  +R  
Sbjct: 730  NMEDAVIMNKSSVDRGMFRSTFFRLYSAEEIKYPGGQEDEILLPEPGVRGYKGKDYYRLL 789

Query: 770  KDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR---KGSESVFVDYVAV 826
            +    +   +D  G   +   + P        + + +  + ++    +  E   VD V V
Sbjct: 790  ESNGIVSPEVDVKGGDVLIGKVSPPRFLQEFKELSPDQAKRDTSIITRHGERGTVDLVLV 849

Query: 827  DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLI 886
               +  N  +   +R R  R P IGDKF++RHGQKGV   L P +DMP++  +G+ PD+I
Sbjct: 850  TETSEGN--KLVKVRVRDLRIPEIGDKFATRHGQKGVIGMLIPQVDMPYT-TSGLVPDII 906

Query: 887  INPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELG 946
            +NPHA PSRMT+  ++E++A K  +  G  +DATPF N+                ++E+ 
Sbjct: 907  LNPHALPSRMTVGQIMEAIAGKFVAATGNPIDATPFYNTP---------------IEEIQ 951

Query: 947  EMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITR 1006
              L   G+   G EV+Y G  G +L   I  G VYYQ+L HMV+DK   R  G +  +TR
Sbjct: 952  RKLLEHGYLSDGSEVVYDGRTGEKLKGRILFGIVYYQKLHHMVADKMHGRGRGPVQILTR 1011

Query: 1007 QPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIH 1066
            QP +GR R GG+RFGEMERD L+ +GAA L+ DRL   SD     VC  CG V       
Sbjct: 1012 QPTEGRAREGGLRFGEMERDCLIGYGAAMLIKDRLLDNSDRATVYVCEQCGYVGWYD--- 1068

Query: 1067 PQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLG 1126
                           R   K  C        +  V + Y F+ L  EL +M I   L LG
Sbjct: 1069 ---------------RTKNKYICPIHGDKTTLYPVVISYAFKLLLQELMSMVIAPKLVLG 1113

Query: 1127 D 1127
            D
Sbjct: 1114 D 1114


>gi|302820918|ref|XP_002992124.1| hypothetical protein SELMODRAFT_430375 [Selaginella moellendorffii]
 gi|300140050|gb|EFJ06779.1| hypothetical protein SELMODRAFT_430375 [Selaginella moellendorffii]
          Length = 1440

 Score =  366 bits (939), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 315/1154 (27%), Positives = 505/1154 (43%), Gaps = 187/1154 (16%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQ-------FPVMLKTRRCHLQGAD 89
             CR   ++Y+  +  D+E+     G  ++  +   GQ        PVML++ RC L G  
Sbjct: 412  QCRLRDMTYSAPISVDIEYT---RGKDIITRKGKDGQGAQVIGRMPVMLRSSRCILTGKS 468

Query: 90   SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
              +L  L E   + GGYF++ G E+V              +++      R       ++I
Sbjct: 469  DAELAKLGECPLDPGGYFVVKGTEKVI-------------LIQEQLSKNR-------III 508

Query: 150  RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL----LPVGIVLKALVDTNDLEIFNHL 205
                 D  S          GS+ L   ++GK  +    +P+ +V+KA+   +D EI   +
Sbjct: 509  -----DSDST---------GSLSLAVHMRGKLNVFSDDVPIVVVMKAMGMESDQEIIQMV 554

Query: 206  TCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSE 265
                D K+      + +P         + E   L + T  Q L+++G   +        +
Sbjct: 555  GT--DPKF----AGILAP--------SMQECASLGVYTTHQALEYLGTKVRVNRQWGSKQ 600

Query: 266  SYYAVAET------VIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQ 319
            +   V E       V   ++ VH  D   K   +  ML+++   +      D+ D + N+
Sbjct: 601  TKSKVDEARDILLNVFLAHVAVHKYDFRPKCIYVALMLRRMLEAILDKECVDDRDYVGNK 660

Query: 320  EILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIG 379
             + L G L+ +      ED  ++    ++  ++    K +  +  ++ K ++ +    + 
Sbjct: 661  RLELAGQLLALLF----EDLFKRSCSELKSNVDRTLSKMNRASQYDVSKSLKPD---MLT 713

Query: 380  TSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-V 438
            + +E  + +G    +       + G T    RL+++  +     V   + F   R  S  
Sbjct: 714  SGLENAISSGNWTVKRFR--MDKKGVTQVVSRLSYIAALGHMTRV--ASQFEKSRKVSGP 769

Query: 439  RKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIG 498
            R L P  WG LCP  TP+GE CGL  ++     + +  D    + D        L   +G
Sbjct: 770  RSLQPSQWGMLCPCDTPEGEGCGLTKNLALMTHITT-DDEEAPLID--------LCTNLG 820

Query: 499  VGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEV 558
            V  I  L         A L V+ +G ++G+      ++    +R+L+ +         ++
Sbjct: 821  VEDINLLSGEEFHSKNAFL-VMFNGTILGI--HRRPQQFATLMRKLRRAG--------KI 869

Query: 559  G-YVPLSLGGAYPGLYLFTSPPKFVRPV----RNISLPSEESQNIELIG--PFEQVFMEI 611
            G +V + +      +Y+ +   +  RPV      +S   E        G   F+    E 
Sbjct: 870  GEFVSIFVNEKQRCIYIASDGGRVCRPVVIADHGVSRIKEHHMKELKDGFRTFDDFLREG 929

Query: 612  RCPDGGDGGRRNAFPATHE----------EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQ 661
                       NA  A +E          EI P  +L V A L PY  HNQSPRN YQC 
Sbjct: 930  LVEYLDVNEENNALIALYEKEADSTTTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCA 989

Query: 662  MAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTG 721
            M KQ MG        R D  LY L  PQ P++ T +      D+   G NA VAV++Y+G
Sbjct: 990  MGKQAMGNIAYNQLQRIDTLLYLLVYPQRPLLTTKSIELVNYDKLGAGQNASVAVMSYSG 1049

Query: 722  YDMEDAMILNKSSVDRGM----------CHGQIYQTETIDLSDDGNKVDRGQKLFRRNKD 771
            YD+EDA+++NK+S+DRG           C  + Y+  T+D            ++    + 
Sbjct: 1050 YDIEDAIVMNKASLDRGFGRCIVLKKFSCLVRKYENRTMD------------RIVAPRQH 1097

Query: 772  AKSLHSVIDSDGLPYVGQMIHPGEPYCSIYD----KTT---------NSWRTNSR--KG- 815
              +   ++D DG+  VG+ I+  + + +       KTT         +++R   +  KG 
Sbjct: 1098 GHATSQLLDQDGIASVGERIYDKDIFVNKESPKDVKTTFLNPLALPDSAYRPTPQRYKGP 1157

Query: 816  -SESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMP 874
              ES  VD V +    S+ +  K  +  RHTR P +GDKFSSRHGQKGVC  +    D P
Sbjct: 1158 LGESAIVDKVLLTTNESQQMVIKCQV--RHTRRPELGDKFSSRHGQKGVCGTIVEQQDFP 1215

Query: 875  FSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTG 934
            F+   G+ PDLI+NPH FPSRMT+  ++E +  K G   GK+   + F       + DT 
Sbjct: 1216 FTE-RGVCPDLIMNPHGFPSRMTVGKMIELLGGKAGVQSGKYHYGSAFGEP--SGHADTV 1272

Query: 935  TDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQ 994
               S +LV          GF+Y G +++YSG+ G  L   I++GP+YYQ+L+HMV DK  
Sbjct: 1273 EAISATLVKH--------GFSYCGKDLIYSGITGCPLQAYIYMGPIYYQKLKHMVLDKMH 1324

Query: 995  VRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCS 1054
             R+ G    +TRQP +GR R GG+R GEMERD L+A+G++ L+ +RL   SD     VC+
Sbjct: 1325 ARAQGPRVVLTRQPTEGRSREGGLRLGEMERDCLVAYGSSMLILERLMISSDQFQVQVCT 1384

Query: 1055 LCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAEL 1114
             CG  L   + H  K                   C  C+  + M  + +PY  + L  EL
Sbjct: 1385 NCG--LLGYYSHKLKMNF----------------CSYCKNGENMAAMKLPYACKLLFQEL 1426

Query: 1115 AAMNIKITLQLGDG 1128
             +MNI   LQL + 
Sbjct: 1427 QSMNIVPRLQLAEA 1440


>gi|357438193|ref|XP_003589372.1| DNA-directed RNA polymerase [Medicago truncatula]
 gi|355478420|gb|AES59623.1| DNA-directed RNA polymerase [Medicago truncatula]
          Length = 1213

 Score =  366 bits (939), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 322/1159 (27%), Positives = 496/1159 (42%), Gaps = 160/1159 (13%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAG--SPVVRERFNF-----GQFPVMLKTRRCHLQGADS 90
             R   ++Y+  L  DV  + +  G     V E  +F     G+ P+ML++  C L     
Sbjct: 118  ARLRNLTYSAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSE 177

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V    ++ ++    + V   F+ R+         +R
Sbjct: 178  KDLTELGECPYDQGGYFIINGSEKV----LIAQEKMSTNHV-YVFKKRQPNKYAYVGEVR 232

Query: 151  CVRKDQSS--VTLKLYYLLNGSVRLGFWLQGKEYL----------LPVGIVLKALVDTND 198
             + + Q+    T+ +  L   S + G      +Y+          +P+ IV +AL    D
Sbjct: 233  SMAESQNRPPSTMFVRMLSRASAKGG---SSGQYIRATLPYIRTEIPIIIVFRALGFVAD 289

Query: 199  LEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV 258
             +I  H+  CYD              + E ++  L E     +  +   L +IG+    V
Sbjct: 290  KDILEHI--CYD---------FADTQMMELLRPSLEEA--FVIQNQQVALDYIGKRGSTV 336

Query: 259  IDGLQSESYYAVAETVIRDYIFVHLND----NNDKFNLLIFMLQKLFSLVDHTSVSDNPD 314
              G+  E     A+ +++  +  H+         K     +++ +L          D+ D
Sbjct: 337  --GVTKEKRIKYAKDILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRD 394

Query: 315  SLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNP 374
               N+ + L G L+    +       R  +  +Q  + +NGK        N++  ++   
Sbjct: 395  HYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCV-DNGKD------VNLQFAIK--- 444

Query: 375  SKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLR 434
            +K I + ++  L TG            RAG +    RL +   +S  R ++      G +
Sbjct: 445  AKTITSGLKYSLATGNWGQANAAG--TRAGVSQVLNRLTYASTLSHLRRLNSPIGREG-K 501

Query: 435  TTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILR 494
                R+L    WG +CP  TP+G+ CGL+ ++     +     +   +    +  T    
Sbjct: 502  LAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFE 561

Query: 495  VLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV--IPSSEIEKVVAHLRRLKVSAASVI 552
            VL+    I  + ++  +  P    + ++G  +G+   P   +  +    RR       V+
Sbjct: 562  VLV----ISFIKEISPAVIPQATKIFVNGCWMGIHRDPDMLVRTLRKLRRRFSAEGFDVV 617

Query: 553  PDDL--EVGYVP----------LSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN--- 597
              D+  EVG V              G     L++       ++     SL   ES     
Sbjct: 618  QVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDKQRLLIKKKDIHSLQQRESPEDGG 677

Query: 598  ---------IELIGPFEQ----VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVA 642
                     IE I   E+    + M I            A+  T  H EIHP+ +L V A
Sbjct: 678  WHDLVSKGFIEYIDTEEEETTMISMTINDLVQARLNPEEAYSDTYTHCEIHPSLILGVCA 737

Query: 643  NLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYG 702
            ++ P+ DHNQSPRN YQ  M KQ MG  V   +FR D   Y L  PQ P+V T       
Sbjct: 738  SIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLH 797

Query: 703  IDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETID-------LSDD 755
              + P G NAIVA+  Y+GY+ ED++I+N+SS+DRG      +++   +       + +D
Sbjct: 798  FRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKED 857

Query: 756  GNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTT---------N 806
              + DR   +  R+     L    D DGL   G  +  GE    I  KTT          
Sbjct: 858  FGRPDRANTMGMRHGSYDKL----DDDGLAPPGTRV-SGEDV--IIGKTTPLSQEEQQGQ 910

Query: 807  SWRTNSR------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQ 860
            + R + R      + SE+  VD V +   N+  L +   +R R  R P IGDKFSSRHGQ
Sbjct: 911  AARYSKRDHSISLRHSETGIVDQVLL-TTNADGL-RFVKVRVRSVRIPQIGDKFSSRHGQ 968

Query: 861  KGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDAT 920
            KG     +   DMP++ V G+ PD+I+NPHA PSRMTI  L+E +  K  +  GK  DAT
Sbjct: 969  KGTVGMTYTQEDMPWT-VEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDAT 1027

Query: 921  PFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPV 980
            PF +                 VD + + L  CG+   G E +Y+G  G  L+  IF+GP 
Sbjct: 1028 PFTDVT---------------VDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPT 1072

Query: 981  YYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDR 1040
            YYQRL+HMV DK   R  G +  +TRQP +GR R GG+RFGEMERD ++AHGAA+ L +R
Sbjct: 1073 YYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKER 1132

Query: 1041 LHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMET 1100
            L   SD +   VC  CG +  A                          C  C+    +  
Sbjct: 1133 LFDQSDAYRVHVCERCGLIAIANL------------------KKNSFECRGCKNKTDIVQ 1174

Query: 1101 VAMPYVFRYLAAELAAMNI 1119
            V +PY  + L  EL AM I
Sbjct: 1175 VYIPYACKLLFQELMAMAI 1193


>gi|407464206|ref|YP_006775088.1| DNA-directed RNA polymerase subunit B [Candidatus Nitrosopumilus sp.
            AR2]
 gi|407047394|gb|AFS82146.1| DNA-directed RNA polymerase subunit B [Candidatus Nitrosopumilus sp.
            AR2]
          Length = 1115

 Score =  366 bits (939), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 333/1192 (27%), Positives = 516/1192 (43%), Gaps = 194/1192 (16%)

Query: 15   LVRHHIESFDYMLDEGLSEMFDHCRQAKI--------------------------SYTGK 48
            + R H+ SFD  L+ GL  + +   Q  I                          S T  
Sbjct: 21   IARQHLNSFDEFLERGLQSIINEVGQIDIENAEYPYKIQLGKVKLQQPRMMELDGSITHI 80

Query: 49   LMADVEFQYLDAGSPVVRE------------RF-NFGQFPVMLKTRRCHLQGADSQKLVS 95
              A+   + +   +PV+ E            RF + G  PVM K+  C L    SQKL+ 
Sbjct: 81   TPAEARLRNVSYSAPVMMEASVVEDGKILESRFVHIGDVPVMAKSNACILHNFSSQKLIE 140

Query: 96   LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
              E+  + GGYFI+NG ERV   V L   +Y   +V       RE      V    V   
Sbjct: 141  HGEDPNDPGGYFIINGSERVI--VGLEDLSYNKIIVD------RETVGGNIVFKAKVYSS 192

Query: 156  QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
                  KL  ++     +   + G    +PV  +++AL   +D EI + ++   D     
Sbjct: 193  IVGYRAKLELVMKNDGLIVARIPGSPVDIPVVTLMRALGLESDREIASVVSLVDD----- 247

Query: 216  EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
                     + + ++    +  D+   T    + +I +   P   G+  E     AET++
Sbjct: 248  ---------IQDELEGSFEKAGDVP--TSKDAIVYISKRIAP---GMLEEFQIKRAETLL 293

Query: 276  RDYIFVHL----NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIY 331
               +  HL     +  +K   L     KL  L       D+ D   N+ I   G ++   
Sbjct: 294  DWGLLPHLGKHPENRKEKAQFLGEAACKLLELKLGWITPDDKDHYGNKVIKFAGQMLADL 353

Query: 332  LKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRL 391
             +    + +R  K     ++E +G+K                    +  +I   + T +L
Sbjct: 354  FRTAFRNLVRDMKY----QLERSGQKRGI---------------NAVAAAIRPGIITDKL 394

Query: 392  --ATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT---SVRKLLPESW 446
              A  TG   + R G T   +R N+L  IS  R +    S    RT      R L    +
Sbjct: 395  NNAIATGNWGRGRVGVTQLLDRTNYLSTISHLRRIQSPLS----RTQPNFEARDLHATHF 450

Query: 447  GFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLP 506
            G +CP  TP+G  CGL+ ++  +  ++    +   +     + T        V    +  
Sbjct: 451  GRICPSETPEGSNCGLVKNLALSGIISVNVPNEEIVEKLYDLGT--------VHFFDAKE 502

Query: 507  KLVKSGPPAVLSVLLDGRVVGVIP-SSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
             L K G      V +DGR++G     SE+ + +  LRR      S I   + V +    +
Sbjct: 503  DLKKDG----TRVFVDGRLIGYYKDGSELAESLRELRR-----NSKIHPHVGVSFHKSEI 553

Query: 566  GGAYPGLYLFTSPPKFVRPVRNIS-----LPSEESQNIE----------LIGPFEQVFM- 609
             G+   LY+  +  + +RP+  I      L SE    I            +G  E +   
Sbjct: 554  EGSTRRLYVNCNAGRVLRPLIIIKDNKPLLTSELLDKISKKLLSWTDLLRMGVLEMIDAN 613

Query: 610  -EIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMG 668
             E  C    D   ++A   TH E+ P  +L   A++ PY +HNQSPRN Y+  MAKQ++G
Sbjct: 614  EEENCYVTLD--EKDAKKHTHLEVFPPAILGAGASIIPYPEHNQSPRNTYESAMAKQSLG 671

Query: 669  FSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAM 728
            FS   +      + + +  PQ PIV T      G+++ P G N IVAVL + GY++EDA+
Sbjct: 672  FSTPMMNTSTYVRQHFMLYPQVPIVNTKAMKLLGLEDRPAGQNCIVAVLPFDGYNIEDAI 731

Query: 729  ILNKSSVDRGMCHG---QIYQTET------------IDLSDDGNKVDRGQKLFRRNKDAK 773
            +L+K+SVDRG+      +IY  E             I  ++D  +  +G++ +R  +D  
Sbjct: 732  VLSKASVDRGLGRTFFFRIYDAEAKQYPGGMRDSFEIPNAEDNIRGYKGERAYRLLEDDG 791

Query: 774  SLHSVIDSDGLP-YVGQMIHPG--EPYCSIYDKTTNSWRTNSRKG---SESVFVDYVAVD 827
             + S     G    +G+   P   E Y     +++  +R ++  G   SE+  +D V + 
Sbjct: 792  VVASEAPVKGGDILIGKTSPPRFMEEYREF--ESSGPYRRDTSIGVRPSETGVIDTVVMT 849

Query: 828  MKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLII 887
              N      K  IR R  R P IGDKF+SRHGQKGV   L    D+P++  +GM PD++I
Sbjct: 850  QSNEGGKMYK--IRARDMRIPEIGDKFASRHGQKGVLGILAKAEDLPYTA-SGMSPDVLI 906

Query: 888  NPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGE 947
            NPHAFPSRMT+ M++ES+  K  +L GK  D + F                   + E+ E
Sbjct: 907  NPHAFPSRMTVGMMMESICGKAAALRGKRFDGSAFVGEK---------------MPEVKE 951

Query: 948  MLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQ 1007
            ++   GF Y G E +Y G  G     ++FIG VYYQ+L HMV+DK   R+ G +  +T+Q
Sbjct: 952  VMDAHGFEYSGKETMYDGRTGKSFPVDVFIGVVYYQKLHHMVADKIHARARGQVQMLTKQ 1011

Query: 1008 PIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHP 1067
            P +GR RGGG+RFGEMERD L+A+GA+ +L DRL   SD     VC  CG V      H 
Sbjct: 1012 PTEGRARGGGLRFGEMERDCLIAYGASMILKDRLLDESDKSDIFVCERCGLVA----YHD 1067

Query: 1068 QKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
             K+              +K  C  C     + +V++ Y F+ L  E+ ++N+
Sbjct: 1068 VKQ--------------RKYVCRVCGDKAKVSSVSVAYAFKLLLQEMQSLNV 1105


>gi|341896020|gb|EGT51955.1| CBN-RPB-2 protein [Caenorhabditis brenneri]
          Length = 1195

 Score =  365 bits (938), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 319/1145 (27%), Positives = 504/1145 (44%), Gaps = 147/1145 (12%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPV--VRERFNFGQFPVMLKTRRCHLQGADSQ 91
            M +  R   ++Y   L  D+        S V  V E+   G+ PVML++  C L     +
Sbjct: 115  MPNEARLRNLTYASPLYVDITKVVTRDDSVVEKVYEKVFVGKVPVMLRSSYCMLSNMTDR 174

Query: 92   KLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC 151
             L  L E   + GGYF++NG E+V   +I  ++    ++   S +D +  Y  K     C
Sbjct: 175  DLTELNECPLDPGGYFVINGSEKV---LIAQEKMATNTVYVFSMKDGK--YAFKTECRSC 229

Query: 152  VRKD-QSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLEI 201
            +    + + T+ +  L  G         G+  +         +P+ IV +AL   +D +I
Sbjct: 230  LENSSRPTSTMWVNMLARGGGGGKKTAMGQRIIGILPYIKQEIPIMIVFRALGFVSDRDI 289

Query: 202  FNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDG 261
              H+   +++           P + E VK  L E     +  +   L  IG   +    G
Sbjct: 290  LGHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RGAKPG 334

Query: 262  LQSESYYAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQ 317
            +  E     A  +++  +  H+    +    K   + +M+ +L          D+ D + 
Sbjct: 335  VTREQRIKYAREILQKELLPHVGVSEHCETKKAFFIGYMVHRLLLAALGRRELDDRDHIG 394

Query: 318  NQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQ 377
            N+ + L G L+    +    + L++ +   Q  I  N    D F L    K      +  
Sbjct: 395  NKRLDLAGPLLAFLFRALFRNLLKEMRMTAQKYINKN----DDFALDVCVK------TST 444

Query: 378  IGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS 437
            I   +   L TG    Q     Q RAG +    RL +   +S  R  +      G +   
Sbjct: 445  ITRGLAYSLATGNWGDQKKAH-QSRAGVSQVLNRLTYTATLSHLRRANSPIGREG-KLAK 502

Query: 438  VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLI 497
             R+L    WG +CP  TP+G+  GL+ ++         Y S G++ +       IL  L 
Sbjct: 503  PRQLHNTQWGMVCPAETPEGQAVGLVKNLALMA-----YISVGSLPE------PILEFLE 551

Query: 498  GVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAASV 551
               M  +L ++  S       + ++G  VG+    E ++++  L++L+      VS  S+
Sbjct: 552  EWSM-ENLEEVSPSSISDATKIFVNGSWVGI--HREPDQLMTTLKKLRRQMDIIVSEVSM 608

Query: 552  IPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------ 597
            + D  D E+  +    G     L +       ++      L   +  N            
Sbjct: 609  VRDIRDREI-RIYTDAGRVCRPLLIVEDQKLALKKTHIDQLKDVDEANKFSWSDLVGGGV 667

Query: 598  IELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPR 655
            +ELI   E+    + +   D   GG  +    TH EIHP  +L V A++ P+ DHNQSPR
Sbjct: 668  VELIDSMEEETSMIAMMPEDLRTGGYCDTH--THCEIHPAMILGVCASIIPFPDHNQSPR 725

Query: 656  NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
            N YQ  M KQ MG        R D   + L  PQ P+V T +      +E P G NAIVA
Sbjct: 726  NTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFNELPAGINAIVA 785

Query: 716  VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAK-- 773
            +L+Y+GY+ ED++I+N S++DRG+     Y++      ++ N  +  ++L  +    K  
Sbjct: 786  ILSYSGYNQEDSVIMNNSAIDRGLFRSVFYRSYR---DNEANLDNANEELIEKPTREKCS 842

Query: 774  ----SLHSVIDSDGLPYVGQMIHPGEPYC-------SIYDKTTNSWRTNSR-------KG 815
                +L+  +D DG+   G  +   +           I D    + +   +       + 
Sbjct: 843  GMRHALYDKLDEDGIISPGMRVSGDDVIIGKTVALPDIDDDLDATGKKYPKRDASTFLRS 902

Query: 816  SESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPF 875
            SE+  VD V + + N  N  +   IR R  R P IGDKF+SRHGQKG    ++   DMPF
Sbjct: 903  SETGIVDQVMLSLNNDGN--KFVKIRMRSVRLPQIGDKFASRHGQKGTMGIMYRQEDMPF 960

Query: 876  SGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGT 935
            +   G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF ++V         
Sbjct: 961  TA-EGLTPDIIINPHAVPSRMTIGHLIECLQGKLSANKGEIGDATPFNDTVN-------- 1011

Query: 936  DESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQV 995
                  V ++  +L   G++  G EV+Y+G  G +LT +IF GP YYQRL+HMV DK   
Sbjct: 1012 ------VQKISGLLCEYGYHLRGNEVMYNGHTGKKLTTQIFFGPTYYQRLKHMVDDKIHS 1065

Query: 996  RSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSD-YHVADVCS 1054
            R+ G +  + RQP++GR R GG+RFGEMERD  ++HGA   L +RL   SD YHV  VC+
Sbjct: 1066 RARGPIQMMNRQPMEGRARDGGLRFGEMERDCQISHGATQFLRERLFEVSDPYHVY-VCN 1124

Query: 1055 LCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAEL 1114
             CG ++ A                          C AC+    +  V +PY  + L  EL
Sbjct: 1125 NCGLIVVANL------------------RTNSFECKACRNKTQVSAVRIPYACKLLFQEL 1166

Query: 1115 AAMNI 1119
             +M+I
Sbjct: 1167 MSMSI 1171


>gi|213408763|ref|XP_002175152.1| DNA-directed RNA polymerase II complex subunit Rpb2
            [Schizosaccharomyces japonicus yFS275]
 gi|212003199|gb|EEB08859.1| DNA-directed RNA polymerase II complex subunit Rpb2
            [Schizosaccharomyces japonicus yFS275]
          Length = 1210

 Score =  365 bits (938), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 328/1199 (27%), Positives = 501/1199 (41%), Gaps = 198/1199 (16%)

Query: 28   DEGLSEMF-DHCRQAKISYTGKLMADVEFQYL---DAGSPVVRE------------RFNF 71
            D   + MF    R   ++Y+  L  D+  + +   D+  P+  E            +   
Sbjct: 93   DGSTTTMFPQEARLRNLTYSSPLYVDMRKKVMRAQDSNVPIGEEIWLTEEEDDEPSKVFI 152

Query: 72   GQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMV 131
            G+ P+ML++  C L G    +L  L E   + GGYFI+NG E+V    I+ ++    ++V
Sbjct: 153  GKIPIMLRSTFCILNGVSDSELYDLNECPYDQGGYFIINGSEKV----IIAQERSAANIV 208

Query: 132  RSSFRDRREGYTDKAVVIRCVRKDQSSV--TLKLYYLLNGSVRLGFWLQGK-EYL---LP 185
            +  FR            IR   +  S +  ++++  +   +   G  ++    Y+   +P
Sbjct: 209  QV-FRKAAPSPIAYVAEIRSALERGSRLISSMQIKLMARSTENSGQTIKATLPYIRSDIP 267

Query: 186  VGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRL 245
            + +V +AL    D +I  H+  CYD     +   +  P + E   I     QD  +    
Sbjct: 268  IVVVFRALGVVPDRDILEHI--CYDPN-DLQMLEMMKPCIEEAFVI-----QDKDV---- 315

Query: 246  QCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLND----NNDKFNLLIFMLQKLF 301
              L +IG+       G+  E     A  +++  +  H+         K   L +M+ ++ 
Sbjct: 316  -ALDYIGKRGSTT--GVTREKRLRYAHDILQKEMLPHITTLEGFETRKAFFLGYMVHRML 372

Query: 302  SLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFF 361
                     D+ D    + + L G L+    +   +   R   K +Q  +E N +    F
Sbjct: 373  LCALERREPDDRDHFGKKRLDLAGPLLASLFRMLFKKMTRDVYKYMQKCVETNRE----F 428

Query: 362  NLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFF 421
            NL    K      S  I   +   L TG    Q    L  R G +    R  F   +S  
Sbjct: 429  NLTLAVK------SNTITNGLRYSLATGNWGDQKR-GLANRVGVSQVLNRYTFASTLSHL 481

Query: 422  RAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGN 481
            R  +      G +    R+L    WG +CP  TP+G+ CGL+ +++    V+    S   
Sbjct: 482  RRTNTPIGRDG-KLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYVSVGSPS--- 537

Query: 482  IRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV--IPSSEIEKVVA 539
                      I+  L   GM  SL     S  P    V ++G  +GV   P    E + +
Sbjct: 538  --------APIIEFLEEWGM-ESLEDYNPSASPNATKVFVNGIWLGVHRDPVHLTETLRS 588

Query: 540  HLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIE 599
              RRL +SA   I  D+               L LFT   +  RP+  +   S      E
Sbjct: 589  LRRRLDISAEVSIVRDIR-----------EKELRLFTDAGRICRPLFIVDNDSNSDTKGE 637

Query: 600  LI---------------------------------------GPFEQVFMEIRCPDGGDGG 620
            L                                           E+  M    PD  +  
Sbjct: 638  LCIRKEHIQQLLEDRDRFDINAEQRFGWSSLIASGLIEYLDAEEEETVMIAMSPDDLELS 697

Query: 621  RR-NAFPATHEEIHPTG----------------------MLSVVANLTPYSDHNQSPRNM 657
            R+ NA     EE+ P                        +L ++A++ P+ DHNQSPRN 
Sbjct: 698  RQANAGYEMQEELDPAKRVKPAPNPHVHAWTHCEIHPAMILGILASIIPFPDHNQSPRNT 757

Query: 658  YQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVL 717
            YQ  M KQ MG  +   + R D     L  PQ P+  T +       E P G NAIVA+L
Sbjct: 758  YQSAMGKQAMGIYLTNYQVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIL 817

Query: 718  AYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHS 777
             Y+GY+ ED++I+N+SS+DRG+     Y+T        G  V    +   R+   +  H 
Sbjct: 818  CYSGYNQEDSIIMNQSSIDRGLFRSIFYRTYMDQEKKIGMTVMEEFERPTRSTTLRMKHG 877

Query: 778  VID---SDGLPYVGQ-------MIHPGEPYCSIYDKTTNSWRTNSR-------KGSESVF 820
              D    DGL   G        +I    P    +++     + +++       + +ES  
Sbjct: 878  TYDKLEDDGLIAPGTRVSGDDIIIGKTAPVPPDHEELGQRTQLHAKRDVSTPLRSTESGI 937

Query: 821  VDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTG 880
            VD V V   N + L +   +R R TR P IGDKF+SRHGQKG     +   DMPFS   G
Sbjct: 938  VDQVMV-TTNQEGL-KFVKVRMRSTRIPQIGDKFASRHGQKGTIGMTYRHEDMPFSA-QG 994

Query: 881  MRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKS 940
            + PD+IINPHA PSRMT+A L+E   +K  +L G   DATPF               ++ 
Sbjct: 995  IVPDIIINPHAIPSRMTVAHLVECQLSKVSALSGLEGDATPF---------------TEV 1039

Query: 941  LVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGT 1000
             V+ + ++LR+ GF+  G EV+Y G  G +L  ++F+GP YYQRL+H+V DK   R+ G 
Sbjct: 1040 TVEAVSKLLRSHGFHSRGFEVMYHGHTGRKLVAQVFLGPTYYQRLKHLVDDKIHARARGP 1099

Query: 1001 MDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVL 1060
            +  +TRQP++GR R GG+RFGEMERD  ++HG + +L +RL  CSD +   VC LCG + 
Sbjct: 1100 VQILTRQPVEGRSRDGGLRFGEMERDCQISHGCSSVLRERLFDCSDAYRVIVCDLCGLIA 1159

Query: 1061 TATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
             A+F                        C +CQ       + +PY  + L  EL +MNI
Sbjct: 1160 IASF------------------KKNSYECRSCQNRTRFSQIYLPYAAKLLFQELMSMNI 1200


>gi|302781178|ref|XP_002972363.1| hypothetical protein SELMODRAFT_172903 [Selaginella moellendorffii]
 gi|300159830|gb|EFJ26449.1| hypothetical protein SELMODRAFT_172903 [Selaginella moellendorffii]
          Length = 1178

 Score =  365 bits (938), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 308/1107 (27%), Positives = 488/1107 (44%), Gaps = 147/1107 (13%)

Query: 71   FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSM 130
             G+ P+ML++  C L     + L  L E   + GGYFI+NG E+V    ++ ++    + 
Sbjct: 142  IGKVPIMLRSSYCTLYQNSDKDLTELGECPYDQGGYFIINGSEKV----LIAQEKMSTNH 197

Query: 131  VRSSFRDRREGYTDKAVVIRCVRKDQS--SVTLKLYYLLNGSVRLGFWLQGKEYL----- 183
            V   F+ R+         +R + + Q+  + ++ +  L     + G      +Y+     
Sbjct: 198  V-YVFKKRQPNKYAYVAEVRSMAESQNRPASSMFVRMLSRAGAKAG---SSGQYIRATLP 253

Query: 184  -----LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQD 238
                 +P+ +V +AL    D +I  H+  CYD              + E ++  L E   
Sbjct: 254  YIKQEIPIIVVFRALGFVADKDILEHI--CYD---------FSDTAMMELLRPSLEEA-- 300

Query: 239  LSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLND----NNDKFNLLI 294
              +  +   L +IG+    V  G+  E     A+ +++  +  H+         K     
Sbjct: 301  FVIQNQQVALDYIGKRGSTV--GVTREKRIKYAKDILQKEMLPHVGVGEYCETKKAYFFG 358

Query: 295  FMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENN 354
            +++ +L          D+ D   N+ + L G L+    ++      +  +  +Q  + +N
Sbjct: 359  YIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGSLFRQLFRKLTKDVRAYLQKCV-DN 417

Query: 355  GKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNF 414
            GK+    NLA   K      +K I + ++  L TG        +   RAG +    RL +
Sbjct: 418  GKEV---NLAYAVK------AKTITSGLKYSLATGNWGQANSGN--ARAGVSQVLNRLTY 466

Query: 415  LRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVAS 474
               +S  R ++      G      R+L    WG +CP  TP+G+ CGL+ ++        
Sbjct: 467  ASTLSHLRRLNSPIGREGRLLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMA---- 522

Query: 475  YYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEI 534
             Y + G+         + + V +      +  ++  +  P    + ++G  VG+    E 
Sbjct: 523  -YITVGSA-------ANPILVFLEEWSTENFEEISPAVIPNATKIFVNGAWVGI--HREP 572

Query: 535  EKVVAHLRRLK----VSAASVIPDDLEVGYVPL--SLGGAYPGLYLFTSPPKFVRPVRNI 588
            E +V  LR+L+    V+    +  D+ +  + L    G     L++       ++     
Sbjct: 573  EHLVKTLRQLRRQVDVNTEVGVVRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKSDIR 632

Query: 589  SLPSEESQN-----------IELIGPFEQ----VFMEIRCPDGGDGGRRNAFPAT--HEE 631
            +L  +E+             IE +   E+    + M I            A+  T  H E
Sbjct: 633  ALQQKEAGENGWHELVSKGFIEYVDTEEEETTMISMTISDLVNARLNPEEAYSDTYTHCE 692

Query: 632  IHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTP 691
            IHP+ +L V  ++ P+ DHNQSPRN YQ  M KQ MG  V   + R D   Y L  PQ P
Sbjct: 693  IHPSMILGVCGSIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKP 752

Query: 692  IVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETID 751
            +V T         + P G NAIVA+  Y+GY+ ED++I+N+SS+DRG      Y++   +
Sbjct: 753  LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSIFYRSYRDE 812

Query: 752  LSDDGNKVDRGQKLFRRNKDAKS-----LHSVIDSDGLP-----YVGQMIHPGEPYCSIY 801
                G  V   ++  R N++  +      +  +D DG+        G+ +  G+      
Sbjct: 813  EKKAGTLVK--EEFERPNRETTTGMRHGSYDKLDDDGIAPPGTRVSGEDVIIGKTTPLAQ 870

Query: 802  DKT-TNSWRTNSR------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKF 854
            D+T T + R + R      + SES  +D V +   N+  L +    R R  R P IGDKF
Sbjct: 871  DETGTQAQRYSKRDQSTCLRHSESGMIDQVLL-TTNADGL-RFVKTRVRSIRIPQIGDKF 928

Query: 855  SSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHG 914
            SSRHGQKG     +   DMPF+   G+ PD+I+NPHA PSRMTI  L+E +  K  +L G
Sbjct: 929  SSRHGQKGTIGMTYTQEDMPFTQ-EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAALMG 987

Query: 915  KFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCE 974
            K  DATPF +                 VD + + L  C +   G E +Y+G  G  L+  
Sbjct: 988  KEGDATPFTDVT---------------VDNISKALHKCNYQLRGFETMYNGHTGRRLSAM 1032

Query: 975  IFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAA 1034
            IFIGP YYQRL+HMV DK   R  G +  +TRQP +GR R GG+RFGEMERD ++AHGAA
Sbjct: 1033 IFIGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA 1092

Query: 1035 YLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVT--CHAC 1092
            + L +RL   SD +   VC  CG +  A                      KK T  C +C
Sbjct: 1093 HFLKERLFDQSDAYRVHVCEHCGLIAIANL--------------------KKNTFECRSC 1132

Query: 1093 QTSKGMETVAMPYVFRYLAAELAAMNI 1119
            +    +  V +PY  + L  EL AM I
Sbjct: 1133 KNKTEIVQVHIPYACKLLFQELMAMAI 1159


>gi|5514652|emb|CAA29180.2| RNA polymerase [Drosophila melanogaster]
          Length = 1123

 Score =  365 bits (938), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 326/1166 (27%), Positives = 517/1166 (44%), Gaps = 186/1166 (15%)

Query: 34   MFDHCRQAKISYTGKLMADV-EFQYLDAGSPV--VRERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+ + + ++   PV    ++   G+ P+ML++  C L     
Sbjct: 57   MPNEARLRNLTYSAPLYVDITKTKNVEGLDPVETQHQKTFIGKIPIMLRSTYCLLSQLTD 116

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  Y  K  +  
Sbjct: 117  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGK--YAFKTEIRS 171

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  +  GS  +     G+  +         +P+ IV +AL    D +
Sbjct: 172  CLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 231

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAE---VQDLSLTTRLQCLQHIGEHFQP 257
            I  H+   +D+           P + E VK  L E   VQ+ ++      L  IG   + 
Sbjct: 232  ILEHIIYDFDD-----------PEMMEMVKPSLDEAFVVQEQNVA-----LNFIGA--RG 273

Query: 258  VIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNP 313
               G+  +     A+ +++  +  H+  ++     K   L +M+ +L          D+ 
Sbjct: 274  ARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDR 333

Query: 314  DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKN 373
            D   N+ + L G L+    +   ++ +++ +   Q  I+  GK F      N++  ++ N
Sbjct: 334  DHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDR-GKDF------NLELAIKTN 386

Query: 374  PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
                I   +   L TG    Q     Q RAG +    RL F   +S  R V+      G 
Sbjct: 387  I---ITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG- 441

Query: 434  RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
            +    R+L    WG LCP  TP+G   GL+ ++     ++                + IL
Sbjct: 442  KLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPIL 490

Query: 494  RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VS 547
              L    M  +L ++  S       + ++G  VG+    + E+++A LR+L+      VS
Sbjct: 491  EFLEEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVS 547

Query: 548  AASVIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRP---VRNISLPSEESQNIELIG 602
              S+I D  D E+               ++T   +  RP   V N SL  +++ ++E++ 
Sbjct: 548  EVSMIRDIRDREI--------------RIYTDAGRICRPLLIVENGSLLLKKT-HVEMLK 592

Query: 603  PF-----------------------EQVFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGM 637
                                     E+  M    P      +  A+  T  H EIHP  +
Sbjct: 593  ERDYNNYSWQVLVASGVVEYMYTLEEETVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMI 652

Query: 638  LSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNT 697
            L V A++ P+ DHNQSPRN YQ  M KQ MG  +     R D   + L  P  P+V T +
Sbjct: 653  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRS 712

Query: 698  YTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-------ETI 750
                   E P G N+IVA+L YTGY+ ED++ILN S+V+RG      Y++          
Sbjct: 713  MEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSENKRVG 772

Query: 751  DLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT------ 804
            D  ++  K  RG     RN     L    D DG+   G  +   +    +  KT      
Sbjct: 773  DQEENFEKPHRGTCQGMRNAHYDKL----DDDGIIAPGIRVSGDD---VVIGKTITLPEN 825

Query: 805  -----TNSWRTNSR------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDK 853
                 +N+ R + R      + SE+  VD V + + NS+   +   IR R  R P IGDK
Sbjct: 826  DDELDSNTKRFSKRDASTFLRNSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDK 883

Query: 854  FSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLH 913
            F+SRHGQKG C   +   DM F+   G+ PD+IINPHA PSRMTI  L+E +  K GS  
Sbjct: 884  FASRHGQKGTCGIQYRQEDMAFT-CEGLAPDIIINPHAIPSRMTIGHLIECLQGKLGSNK 942

Query: 914  GKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTC 973
            G+  DATPF ++V               V ++   L+  G++  G EV+Y+G  G ++  
Sbjct: 943  GEIGDATPFNDAVN--------------VQKISTFLQEYGYHLRGNEVMYNGHTGRKINA 988

Query: 974  EIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGA 1033
            ++F+GP YYQRL+HMV DK   R+ G +  + RQP++GR R GG+RFGEMERD  ++HGA
Sbjct: 989  QVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGA 1048

Query: 1034 AYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQ 1093
            A  L +RL   SD +   +C+ CG +  A   +                      C  C+
Sbjct: 1049 AQFLRERLFEVSDPYRVHICNFCGLIAIANLRN------------------NTFECKGCK 1090

Query: 1094 TSKGMETVAMPYVFRYLAAELAAMNI 1119
                +  V +PY  + L  EL +MNI
Sbjct: 1091 NKTQISQVRLPYAAKLLFQELMSMNI 1116


>gi|348676682|gb|EGZ16499.1| hypothetical protein PHYSODRAFT_262616 [Phytophthora sojae]
          Length = 1171

 Score =  365 bits (938), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 325/1157 (28%), Positives = 509/1157 (43%), Gaps = 163/1157 (14%)

Query: 28   DEGLSEMFDH-CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQ 86
            D   S MF H  R   ++Y+  L  DV+   +D    V   +   G  P+ML+++ C L 
Sbjct: 95   DGSTSVMFPHEARLRNLTYSAPLYVDVD---MDPYDQVETPKEFIGMVPIMLRSQYCVLT 151

Query: 87   GADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKA 146
                ++L  L E   + GGYFI+NG E+V  +      N+     +++          ++
Sbjct: 152  HKTDKELTELNECVYDQGGYFIINGSEKVLIAQERMSNNHVYCFRKNAASKYSWVCETRS 211

Query: 147  VVIRCVRKDQSSVTLKLYYLLNG-SVRLGFWLQGK-EYL---LPVGIVLKALVDTNDLEI 201
             V   VR   S++ +++Y    G S   G  ++    Y+   +PV I+ +AL    D EI
Sbjct: 212  HVEHGVRP-TSTMYVQMYQKSGGKSAITGNQIRAVIPYIRQDIPVVIIFRALGFVADREI 270

Query: 202  FNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDG 261
              H+  CYD              + ER K  L E     +  +   L  IG     +   
Sbjct: 271  LEHI--CYD---------FSDAELMERFKSSLEEA--FVIQEQEVALDFIGRRGSAI--N 315

Query: 262  LQSESYYAVAETVIRDYIFVHL--NDNND--KFNLLIFMLQKLFSLVDHTSVSDNPDSLQ 317
            +        A+ +++  +  H+   D+N+  K   L +++ KL          D+ D   
Sbjct: 316  VSKADRIRYAQDILQKEMLPHVGVEDHNETKKAYFLGYVVHKLLMCSLGRIGEDDRDHYG 375

Query: 318  NQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQ 377
            N+ + L G L+    +   +   +  K  +Q  ++N GK F+   LA I+       S+ 
Sbjct: 376  NKRLDLAGPLLGGLFRILFKKLTKDVKSFLQKCVDN-GKDFNL-TLA-IR-------SRT 425

Query: 378  IGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS 437
            I   +   L TG    Q       +AG +    RL +   +S  R ++      G +   
Sbjct: 426  ITNGLRYSLATGNWGMQKS---ASKAGVSQVLNRLTYASSLSHLRRLNTPLGREG-KQAQ 481

Query: 438  VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLI 497
             R+L    WG +CP  TP+G+  GL+ ++     + S    +  I +F       L    
Sbjct: 482  PRQLHNTHWGMICPAETPEGQAVGLVKNLALMAYI-SVGSPQAPILEF-------LEEWA 533

Query: 498  GVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLE 557
               +    P+++    P    + ++G  VGV    E  +++  LR L+      +  D E
Sbjct: 534  TENLEEIKPQII----PHSTKIFVNGNWVGV--HREPNELIRTLRSLR----RCVDIDAE 583

Query: 558  VGYVPLSLGGAYPGLYLFTSPPKFVRPV-------------RNISLPSEESQN------- 597
            V  +   +      L ++T   +  RP+             + + L + +  N       
Sbjct: 584  VSVIRDLMNKE---LRIYTDAGRVCRPLFIVEDNQLLLQKEQVVKLQNHKITNYRWHNLL 640

Query: 598  ----IELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHN 651
                +ELI   E+    + +   D G G + +    TH EIHP+ +L + A++ P+ DHN
Sbjct: 641  TDGVVELIDTEEEEVCMIAMEPKDVGTGSQIH----THCEIHPSMILGICASIIPFPDHN 696

Query: 652  QSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTN 711
            QSPRN YQ  M KQ MG      + R D     L  PQ P+V T         E P+G N
Sbjct: 697  QSPRNTYQSAMGKQAMGIYCSNFRARMDTMANVLNYPQKPLVTTRAMEYLHFRELPSGIN 756

Query: 712  AIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGN------------KV 759
            AIV + +YTGY+ ED++I+N+S++DRG      Y+   ID   + +              
Sbjct: 757  AIVGIASYTGYNQEDSLIMNQSAIDRGFFRSTFYRC-YIDQERNKSPHGGPGGGAGGANC 815

Query: 760  DRGQKLFRRN---KDAKSLHSVIDSDGLPYVGQMIH------------PGEPYCSIYDKT 804
            +  +K  R N       S H  +D+DGL   G  +             P     S+  + 
Sbjct: 816  EEFEKPSRENCLGLRHGSYHK-LDNDGLVAPGTRVSGNDIIIGKTSPLPQSEDSSLEQRH 874

Query: 805  TNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVC 864
                 + + +  E+  +D  +V +  + +  +   +RFR+ R P IGDKF+SRHGQKG  
Sbjct: 875  QKRDASTALRSHENGIID--SVMLTTNADGFKFTKVRFRNIRVPQIGDKFASRHGQKGTI 932

Query: 865  SQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFAN 924
               +   DMPF+ V G+ PD+++NPHA PSRMT+  L+E +  K  S  G   DATPF +
Sbjct: 933  GMTYRQEDMPFT-VEGITPDIVVNPHAIPSRMTVGHLVECLLGKVSSQTGDEGDATPFTD 991

Query: 925  SVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQR 984
               +   DT               L   G+  HG EV+YSG  G  LT +IFIGP +YQR
Sbjct: 992  VTVQAIADT---------------LHNLGYQKHGNEVMYSGHTGRRLTAQIFIGPTFYQR 1036

Query: 985  LRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTC 1044
            L+HMV DK   RS G +  +TRQP++GR R GG+R GEMERD L++HG+A  L DRL   
Sbjct: 1037 LKHMVDDKIHSRSRGPVTMLTRQPMEGRAREGGLRMGEMERDCLISHGSANFLMDRLFAN 1096

Query: 1045 SDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVT--CHACQTSKGMETVA 1102
            SD +   VC +CG +  A                      +K+T  C  C+    +  V 
Sbjct: 1097 SDAYRVHVCDICGIIAIANL--------------------RKMTFECRTCRNKTQISQVH 1136

Query: 1103 MPYVFRYLAAELAAMNI 1119
            +PY  + L  EL AM+I
Sbjct: 1137 IPYSCKLLFQELMAMSI 1153


>gi|308159405|gb|EFO61937.1| DNA-directed RNA polymerase subunit B [Giardia lamblia P15]
          Length = 1236

 Score =  365 bits (938), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 234/761 (30%), Positives = 380/761 (49%), Gaps = 51/761 (6%)

Query: 69  FNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPM 128
            N G  P+M+ ++ C L G   ++ + L+E+  + GGYFI NG ++V R  +    N P+
Sbjct: 136 INAGDVPIMVGSKLCLLHGKTREEKIRLREDERDAGGYFISNGQDKVVRLYLDCLSNTPL 195

Query: 129 SMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGI 188
           +  +         +    V  + VR+D    +  +    +  + + F + G+   +P+ +
Sbjct: 196 AFTKYRSLSTMSEFAPAGVHYKGVREDGHVYSTVIQARKDNFLSVKFTIDGRYIYVPLIL 255

Query: 189 VLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCL 248
           VL+ALV T D EI+  +       + KE G      VS R++ +L +     + +   C 
Sbjct: 256 VLRALVSTTDKEIYTTICTICSSAHPKEDG-----YVSLRIEAMLRDFHKYRIFSHKACK 310

Query: 249 QHIGEHFQPVIDGLQSESYYAV--AETVIRDYIFVHL--NDNNDKFNLLIFMLQKLFSLV 304
           Q +G  F+ ++  L       +   + +   Y+ +++   D   KFN++  M +K   L 
Sbjct: 311 QLLGGKFRMILSLLDRYDLTDIECCDLLFEQYLLINIPKEDTRAKFNMMCLMARKCLLLF 370

Query: 305 DHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGK--KFDFFN 362
                SD+PD L +QE L PG L     K ++   L K  +LI     + G    ++  N
Sbjct: 371 GGFIQSDSPDMLSSQEALTPGAL----FKAEIASTLIKIMRLISRNATSTGAIGSYELSN 426

Query: 363 LANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFR 422
                 +      + + + + ++   G +    G D    +G +V A+R+N++RF++ FR
Sbjct: 427 SWISHYLASPKLWRPLSSGLRSLAGPGVMRAYKGHDYSNMSGISVLADRINYVRFLAHFR 486

Query: 423 AVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNI 482
            ++RG +FA  + TS+RKL PES+GF C VHTPDG PCG+L H+     V S   +   I
Sbjct: 487 CINRGNAFATHKITSIRKLYPESYGFQCAVHTPDGAPCGILTHLCYKATVLSSTPTTDQI 546

Query: 483 RDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSE-IEKVVAHL 541
                   ++  +L   G+ PSL           L V+L+G ++G + +++   ++VA +
Sbjct: 547 -------ANLFILLSQFGLSPSLSDTY------TLGVVLNGTILGFMDTNKRASQLVASI 593

Query: 542 RRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELI 601
           R  K+  +++ P    +     +    +PG+Y+ TS  +F RPV ++      + ++E I
Sbjct: 594 RAAKIE-STIFPYTEIIFIEKGNKDHLFPGIYMNTSMGRFYRPVHSLI-----NNSLEYI 647

Query: 602 GPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQ 661
            P EQ+F++I     GD  R      TH+E+ PT +LS++  L P+SDHNQSPRNMY+CQ
Sbjct: 648 TPLEQIFLQIAI--YGDDVRSGV--TTHQEVTPTSLLSILGLLVPFSDHNQSPRNMYECQ 703

Query: 662 MAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKY-GIDEYPTGTNAIVAVLAYT 720
           M KQTM    + L +R D K Y L TPQ PIVR        G D +PTGTN +VAV AYT
Sbjct: 704 MLKQTMAIPCRNLTYRYDAKSYLLTTPQKPIVRNAIIHDIGGFDTHPTGTNLVVAVSAYT 763

Query: 721 GYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDG-----NKVDRGQKLFRRNKDAKSL 775
            YDMEDA ++NK+S++RG+ HG +Y    ID  DD        +       +R+ D    
Sbjct: 764 SYDMEDAALINKASLERGLFHGTVYSVHDIDCYDDKLMRYMRSMTTAVPYLKRSPDYSVT 823

Query: 776 H------SVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRT 810
           H      + +D DGLP +G  +  G  +   YD T   + T
Sbjct: 824 HMDENYDTELDEDGLPPIGAYLSHGSVFYQTYDPTKQCYST 864



 Score =  256 bits (653), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 139/298 (46%), Positives = 185/298 (62%), Gaps = 33/298 (11%)

Query: 829  KNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIIN 888
            K+S    Q+  I  RH R P++GDK +SRHGQKG+    W   DMPF+  +G+ PDLIIN
Sbjct: 967  KSSLCFIQRVRIVIRHDRTPVVGDKVASRHGQKGIMGIRWRQTDMPFTS-SGIVPDLIIN 1025

Query: 889  PHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGE- 947
            PHAFPSRMT+ ML+ES+A+K G  +  F+D++PF  S          DE ++ VD  GE 
Sbjct: 1026 PHAFPSRMTVGMLIESLASKIGVHYADFVDSSPFQWS----------DERRA-VDVFGEQ 1074

Query: 948  MLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQ 1007
            +L+T  FN +G EV+YS + G  +  +IFIG VYYQRLRHMVSDK+QVR+ G  D+IT+Q
Sbjct: 1075 LLKTGRFNKYGSEVMYSAITGDPMPADIFIGVVYYQRLRHMVSDKYQVRAEGPSDKITKQ 1134

Query: 1008 PIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHP 1067
            PIKGRKRGGG+RFGEMERD+LLAHGA   L  RL T SD     +C+ CGS+L       
Sbjct: 1135 PIKGRKRGGGLRFGEMERDALLAHGAMASLRGRLCTESDATEHVICAACGSLLGM----- 1189

Query: 1068 QKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
                  ++GG           C  C+ +     + +P V   LA +LAAM +++   +
Sbjct: 1190 ------QLGG---------NLCRECKATGHGRLIQIPMVLLVLANDLAAMGVRMRFNV 1232


>gi|168027816|ref|XP_001766425.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162682334|gb|EDQ68753.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1185

 Score =  365 bits (938), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 316/1113 (28%), Positives = 495/1113 (44%), Gaps = 161/1113 (14%)

Query: 71   FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSM 130
             G+ P+ML++R C L     + L  L E   + GGYFI+NG E+V    ++ ++    + 
Sbjct: 149  IGKVPIMLRSRYCTLFENSDKDLTELGECPYDQGGYFIINGSEKV----LIAQEKMSTNH 204

Query: 131  VRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLL------NGSVRLGFWLQGKEYL- 183
            V   F+ R+         +R + ++Q+     ++  +       G     +      Y+ 
Sbjct: 205  V-YVFKKRQPNKYCYVAEVRSMAENQNRPPSGMFVRMLSRAGAKGGSSGQYIRATLPYIR 263

Query: 184  --LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSL 241
              +P+ +V +AL    D +I  H+  CYD              + E ++  L E     +
Sbjct: 264  TEIPIIVVFRALGFVADKDILEHI--CYD---------FSDTAMMELLRPSLEEA--FVI 310

Query: 242  TTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLND----NNDKFNLLIFML 297
              +   L +IG+    V  G+  E     A+ +++  +  H+         K     +++
Sbjct: 311  QNQQVALDYIGKRGSTV--GVTREKRIKYAKEILQKEMLPHVGVGEFCETKKAYFFGYII 368

Query: 298  QKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKK 357
             +L  L       D+ D   N+ + L G L+    +       +  +  +Q  ++N GK+
Sbjct: 369  HRLL-LCAIGGAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTKDVRGYLQKCVDN-GKE 426

Query: 358  FDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRL--ATQTGLDLQQRAGYTVQAERLNFL 415
                NLA   K      +K I + ++  L TG    A   G+    RAG +    RL + 
Sbjct: 427  I---NLAYAVK------AKTITSGLKYSLATGNWGQANTAGV----RAGVSQVLNRLTYA 473

Query: 416  RFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASY 475
              +S  R ++      G +    R+L    WG +CP  TP+G+ CGL+ ++     + + 
Sbjct: 474  STLSHLRRLNSPIGREG-KLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMAYI-TV 531

Query: 476  YDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIE 535
              +   I +F +  ++     I   +IP+  K           + ++G  VG+  + E+ 
Sbjct: 532  GSAANPILEFLEEWSTENFEEISPAVIPNSTK-----------IFVNGLWVGIHRNPEL- 579

Query: 536  KVVAHLRRLKVSAASVIPDDLEVGYV-PLSLGGAYPGLYLFTSPPKFVRP---------- 584
             +V  LR+L+      +  + EVG V  + L      L L+T   +  RP          
Sbjct: 580  -LVRTLRQLRRQ----VDVNTEVGVVRDIRL----KELRLYTDYGRCSRPLFIVEKQRLL 630

Query: 585  -----VRNISLPSEESQN----------IELIGPFEQ----VFMEIRCPDGGDGGRRNAF 625
                 VR + +  E S+N          IE +   E+    + M I            A+
Sbjct: 631  IKKQDVRALQM-KESSENSWYDLVSKGFIEYVDTEEEETTMISMTIADLVNARNNPEEAY 689

Query: 626  PAT--HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
              T  H EIHP+ +L V  ++ P+ DHNQSPRN YQ  M KQ MG  V   + R D   Y
Sbjct: 690  SDTYTHCEIHPSMILGVCGSIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAY 749

Query: 684  HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
             L  PQ P+V T         + P G NAIVA+  Y+GY+ ED++I+N+SS+DRG     
Sbjct: 750  VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSI 809

Query: 744  IYQTETIDLSDDGNKVDRGQKLFRRNKDAKS-----LHSVIDSDGLPYVGQMIH------ 792
             Y++   +    G  +   ++  R N++  +      +  +D DGL   G  +       
Sbjct: 810  FYRSYRDEEKKQGTLIK--EEFERPNRENTTGMRHGSYDKLDDDGLAPPGTRVSGEDVII 867

Query: 793  ------PGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTR 846
                  P +   S   + T   ++   + SES  +D V +   N+  L +   IR R  R
Sbjct: 868  GKTTPLPQDDNASQAQRYTKRDQSTCLRHSESGMIDQVLL-TTNADGL-RFVKIRVRSIR 925

Query: 847  NPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVA 906
             P IGDKFSSRHGQKG     +   DMP++   G+ PD+I+NPHA PSRMTI  L+E + 
Sbjct: 926  IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTQ-EGITPDIIVNPHAIPSRMTIGQLIECIM 984

Query: 907  AKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGV 966
             K  +  GK  DATPF +                 VD + + L  CG+   G EV+Y+G 
Sbjct: 985  GKVAAHMGKEGDATPFTDVT---------------VDNISKALHKCGYQMRGFEVMYNGH 1029

Query: 967  YGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERD 1026
             G  LT  IF+GP YYQRL+HMV DK   R  G +  +TRQP +GR R GG+RFGEMERD
Sbjct: 1030 TGRRLTAHIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERD 1089

Query: 1027 SLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKK 1086
             ++AHGAA+ L +RL   SD +   VC  CG +  A      K+   E            
Sbjct: 1090 CMIAHGAAHFLKERLFDQSDAYRVHVCEHCGIIAIANL----KKNTYE------------ 1133

Query: 1087 VTCHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
              C  C+ +  +  V +PY  + L  EL +M I
Sbjct: 1134 --CRGCKNNTDIVQVHIPYACKLLFQELMSMAI 1164


>gi|290973756|ref|XP_002669613.1| DNA-directed RNA polymerase II [Naegleria gruberi]
 gi|284083163|gb|EFC36869.1| DNA-directed RNA polymerase II [Naegleria gruberi]
          Length = 1233

 Score =  365 bits (938), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 315/1123 (28%), Positives = 515/1123 (45%), Gaps = 158/1123 (14%)

Query: 65   VRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLER--VFRSVILP 122
            +  +   G  P+ML++  C L  ++ Q +  + E   + GGYFI+NG E+  + +  +  
Sbjct: 200  IHNQIPLGSIPIMLRSVYCML--SEVQDVTDVGECPFDSGGYFIINGGEKVIIAQERMAT 257

Query: 123  KQNYPMSMVRSSF------RDRREG-YTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGF 175
               Y      S F      R  +EG Y   +     +   Q +    +  L++ ++    
Sbjct: 258  NHVYVFKKAMSKFSYVAEIRSSQEGGYRAPSGFFIKMEPKQGNKKGGIGGLIHATI---- 313

Query: 176  WLQGKEYL---LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKII 232
                  Y+   +P+ I+ +AL    D EI  H+    ++    E   +  P + E V ++
Sbjct: 314  -----PYIRQDIPIVILFRALSCQADKEIIKHIIYNLNDGQMME---LLRPSLEEAVAVL 365

Query: 233  LAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFN- 291
               V           L +IG+    +  G   E     AE +++  +  H+   +  ++ 
Sbjct: 366  SNTV----------ALDYIGKRGNTL--GASQEKRMNHAEEILQKEMLPHVGIGDTSYDR 413

Query: 292  ---LLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQ 348
                + +M+ +L          D+ D   N+ + L G L+     +         KK+++
Sbjct: 414  KAYFIGYMVHRLLLGALGRRPLDDRDHYGNKRLELAGGLLQGLFLQLF-------KKVVK 466

Query: 349  DEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQ 408
             E+E+  KK      + I      N  + I   ++  L TG    Q   D+  RAG    
Sbjct: 467  -EMESTLKK-SILKSSEIDVAPAVN-KRTITKGLQYSLATGNWGVQGSRDI--RAGVAQV 521

Query: 409  AERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTS 468
              RL +   +S  R ++     +G +  + R+L    WG +CP  TP+G  CGL+ ++  
Sbjct: 522  LNRLTYTSTLSHLRRLNTPIERSG-KQAAPRQLHNTQWGVICPAETPEGGACGLVKNLAL 580

Query: 469  TCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV 528
               +    D           +T I ++L  +G I  L +L +S       V L+G  +GV
Sbjct: 581  MSYITVGTD-----------KTHISKMLDELG-INKLHELDESDLNKYTKVFLNGMWMGV 628

Query: 529  IPSSEIEKVVAHLRRLKVSAA-----SVIPD--DLEVGYVPLSLGGAYPGLYLFTS---- 577
              + +  ++V HLR L+ + A     S++ D  + EV     S   A P L++       
Sbjct: 629  HHTPD--ELVKHLRVLRRTGAVDMQVSIVRDVREREVRIWCDSGRCARP-LFIVDRDHDT 685

Query: 578  ---PPKFVRPVRNISL--------------PSEESQNIELIGPFEQVFMEIRCPDGGD-- 618
                 + V+ +R  ++               +EE ++I +   F ++  +    + G   
Sbjct: 686  LFIKNQHVQALRENTMNWDNLLEQGLVELIDTEEEESIMIAMDFRELVEKRSSANEGKSR 745

Query: 619  -GGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFR 677
             GG R   P TH EIHP+ +L ++ ++ P+ DHNQSPRN YQ  M KQ MG  +   + R
Sbjct: 746  KGGSRQ--PYTHAEIHPSMILGILGSIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFQQR 803

Query: 678  ADQKLYHLQTPQTPIVRTN--TYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSV 735
             D   + L  PQ P+V T    Y ++G  E P G NA+VA+  Y+GY+ ED++I+N+S++
Sbjct: 804  MDTLAHVLYYPQRPLVTTQPMEYLRFG--ELPAGQNAVVAIACYSGYNQEDSVIMNQSAI 861

Query: 736  DRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA---KSLHSVIDSDGLPYVGQMIH 792
            DRG+     Y+T +      GN +    +  +R+  A    S +  ++ DG+   G  + 
Sbjct: 862  DRGLFRSVFYRTYSDHERKKGNFLLENFEKPKRDTTAGMKTSTYEKLEDDGIIAPGVRVS 921

Query: 793  PGE---------PYCSIYDKTTNSWR---TNSRKGSESVFVDYVAVDMKNSKNLPQKANI 840
              +         P  S   KT+   R   +   + +E+  VD V V   +S+   +   I
Sbjct: 922  GSDIIIGKTVPLPEESAKQKTSRQTRLDMSTPLRSNENGIVDTVVV-TTDSEGF-KFVKI 979

Query: 841  RFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAM 900
            + R  R P IGDKFSSRHGQKG C   +   D+PF+   G+ PD+I+NPHA PSRMT+  
Sbjct: 980  KVRVVRIPQIGDKFSSRHGQKGTCGITYRQEDLPFTR-EGIVPDIIVNPHAIPSRMTVGQ 1038

Query: 901  LLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVE 960
            L+E +  K  SL G   DATPF ++                V+   EML + G+     E
Sbjct: 1039 LIECLLGKISSLSGNEGDATPFTDAN---------------VNYFSEMLHSLGYQKRANE 1083

Query: 961  VLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRF 1020
            V+++G  G +L  +IFIGP YYQRL+HMV DK   R+ G +  +TRQP++GR R GG+RF
Sbjct: 1084 VMFNGHTGRKLEAQIFIGPTYYQRLKHMVDDKIHSRARGPLQNLTRQPVEGRARDGGLRF 1143

Query: 1021 GEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPP 1080
            GEMERD +++HG+A  L +RL   SD +   +C++CG + TA     Q +          
Sbjct: 1144 GEMERDCMISHGSAAWLKERLFQVSDEYRVHICNVCGMMATANIKQQQFK---------- 1193

Query: 1081 ARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITL 1123
                    C AC        V +PY F+ +  EL AMN+ + +
Sbjct: 1194 --------CDACDNKTSFSQVFIPYAFKLMIQELMAMNLAVRI 1228


>gi|226480014|emb|CAX73303.1| putative DNA-directed RNA polymerase II 140 kDa polypeptide (RNA
            polymerase II subunit 2) (RPB2) [Schistosoma japonicum]
          Length = 1196

 Score =  365 bits (937), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 309/1128 (27%), Positives = 491/1128 (43%), Gaps = 151/1128 (13%)

Query: 57   YLDAGSPVVR---------ERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYF 107
            Y+D    ++R         E+   G+ P+ML++  C L     + L  L E   + GGYF
Sbjct: 143  YVDVMKKIIRDETEEEKPLEKKFIGKIPIMLRSTYCLLSVMSDRDLAELNECPLDPGGYF 202

Query: 108  ILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVR-KDQSSVTLKLYYL 166
            I+NG E+V     L  Q    +     F+ +   Y  K  +  C+    + + TL +  +
Sbjct: 203  IINGSEKV-----LIAQEKMATNTVYVFKQKDSKYAYKTEIRSCLEHSSRPASTLWINMM 257

Query: 167  LNGS----------VRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
              G            R+   L   +  +PV IV +AL    D +I  H+   +D+   +E
Sbjct: 258  ARGGKDGSKRATIGQRIVAILPYIKQEIPVLIVFRALGFVADRDILEHIIYDFDDTEMRE 317

Query: 217  --KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETV 274
              K ++    V +  K+                L  IG   +    G+  E     A+ +
Sbjct: 318  MIKPSLDDAFVIQEQKV---------------ALNFIGS--RGARPGVTKEKRIKYAKEI 360

Query: 275  IRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITI 330
            ++     H+  ++     K   L +M+ +L          D+ D   N+ + L G L+  
Sbjct: 361  LQKETLPHVGVSDFCETRKAYFLGYMVHRLLLAALKRRDVDDRDHYGNKRLDLAGPLLAF 420

Query: 331  YLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGR 390
              +    + L K  +L   +  + GK F      N++  +    S+ I   ++  L TG 
Sbjct: 421  LFRGLFRN-LTKEIRLYAQKFIDKGKDF------NLELAIR---SQIITDGLKYSLATGN 470

Query: 391  LATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLC 450
               Q   + Q R G +    RL F   +S  R ++      G +    R+L    WG +C
Sbjct: 471  WGDQKKAN-QARPGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLARPRQLHNTLWGMIC 528

Query: 451  PVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVK 510
            P  TP+G   GL+ ++     ++                + IL  L    M  +L ++  
Sbjct: 529  PAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEFLEEWSM-ENLEEIAP 576

Query: 511  SGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAASVIPDDLEVGYVPLS 564
            S       + ++G  VG+   S  + ++  LR+L+      VS  S+I D  +      +
Sbjct: 577  SAIGKTCKIFVNGCWVGI--HSSPDHLMGTLRKLRRQVDVIVSEVSMIRDYRDQEIRIYT 634

Query: 565  LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------IELIGPFEQ-VFMEI 611
              G      +     K +    +I L  +++ N            +E I   E+   M  
Sbjct: 635  DAGRICRPLVIVEKGKLLLKRSHIELLKDKAYNRYSWQDLVLSGVVEYIDTLEEETVMIA 694

Query: 612  RCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSV 671
              P             TH EIHP+ +L + A++ P+ DHNQSPRN YQ  M KQ MG  +
Sbjct: 695  MGPAEMQAAVNYCKTHTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVYI 754

Query: 672  QALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILN 731
                 R D     L  PQ P+V T +       E P G NAIVA+  YTGY+ ED++I+N
Sbjct: 755  SNFHTRMDTLANVLYYPQKPLVATRSMEYLRFRELPAGINAIVAIATYTGYNQEDSVIIN 814

Query: 732  KSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAK------SLHSVIDSDGLP 785
            +S++ RG    + Y+T     +  G  +   +++F +           +++  +D DGL 
Sbjct: 815  ESAIQRGFFRSEFYRTYKDQETRHGMDL---EEVFEKPNPQNCQGMRHAIYDKLDDDGLI 871

Query: 786  YVGQMIHPGEPYCSIY-------DKTTNSWRTNSRKG-------SESVFVDYVAVDMKNS 831
              G  +   +             D+     R  +++        SE   VD V V   N 
Sbjct: 872  APGTRVSGDDVLIGKTITLPENEDEMEGGQRRYTKRDASVFMRRSEYGIVDQVMVTWNNE 931

Query: 832  KNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHA 891
             N  +   +R R T+ P +GDKF+SRHGQKG C   +   DMPF+   G+ PD+IINPHA
Sbjct: 932  GN--KFCKVRVRTTKAPQVGDKFASRHGQKGTCGIRYRQEDMPFT-CEGITPDIIINPHA 988

Query: 892  FPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRT 951
             PSRMTI  L+E +  K  +  G+  DATPF ++V               V ++  +L+ 
Sbjct: 989  IPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVN--------------VRKISLLLQE 1034

Query: 952  CGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKG 1011
             G+ + G E++Y+G  G +L  +IF+GP YYQRL+HMV DK   +S G +  + RQP++G
Sbjct: 1035 YGYQHTGNEIMYNGFTGRKLNSQIFLGPTYYQRLKHMVDDKIHSQSRGPVQILNRQPMEG 1094

Query: 1012 RKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRA 1071
            R R GG+RFGEMERD  +AHGAA  L +RL   SD +   VC+LCG +  A   H +   
Sbjct: 1095 RSRDGGLRFGEMERDCQIAHGAAQFLRERLFFASDPYQVYVCNLCGLIAIA---HQRN-- 1149

Query: 1072 IREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
                         K   C +C+ +  +  V +PY  + L  EL +M+I
Sbjct: 1150 -------------KTYECRSCKNTTQISLVKLPYACKLLFQELMSMSI 1184


>gi|308487676|ref|XP_003106033.1| CRE-RPB-2 protein [Caenorhabditis remanei]
 gi|308254607|gb|EFO98559.1| CRE-RPB-2 protein [Caenorhabditis remanei]
          Length = 1207

 Score =  365 bits (937), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 320/1144 (27%), Positives = 505/1144 (44%), Gaps = 137/1144 (11%)

Query: 34   MFDHCRQAKISYTGKLMADVE--FQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQ 91
            M +  R   ++Y   L  D+       D+ +  V E+   G+ PVML++  C L     +
Sbjct: 123  MPNEARLRNLTYASPLYVDITKVVTRDDSVNEKVYEKVFVGKVPVMLRSSYCMLSNMTDR 182

Query: 92   KLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC 151
             L  L E   + GGYF++NG E+V   +I  ++    ++   S +D +  Y  K     C
Sbjct: 183  DLTELNECPLDPGGYFVINGSEKV---LIAQEKMATNTVYVFSMKDGK--YAFKTECRSC 237

Query: 152  VRKD-QSSVTLKLYYLLNGS---------VRLGFWLQGKEYLLPVGIVLKALVDTNDLEI 201
            +    + + T+ +  L  G           R+   L   +  +P+ IV +AL   +D +I
Sbjct: 238  LENSSRPTSTMWVNMLARGGGGGKKTAMGQRIIGILPYIKQEIPIMIVFRALGFVSDRDI 297

Query: 202  FNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEH-FQPVID 260
              H+   +D+           P + E VK  L E     +  +   L  IG    +P   
Sbjct: 298  LGHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGARGAKP--- 341

Query: 261  GLQSESYYAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     A  +++  +  H+    +    K   + +M+ +L          D+ D +
Sbjct: 342  GVTREQRIKYAREILQKELLPHVGVSEHCETKKAFFIGYMVHRLLLAALGRRELDDRDHI 401

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +    + L++  K+I   I+       + N  +   +     + 
Sbjct: 402  GNKRLDLAGPLLAFLFRALFRNLLKE--KMITSCIQMRMTAQKYINKNDDFALDVCVKTS 459

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   +   L TG    Q     Q RAG +    RL +   +S  R  +      G +  
Sbjct: 460  TITRGLAYSLATGNWGDQKKAH-QSRAGVSQVLNRLTYTATLSHLRRANSPIGREG-KLA 517

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G+  GL+ ++         Y S G++ +       IL  L
Sbjct: 518  KPRQLHNTQWGMVCPAETPEGQAVGLVKNLALMA-----YISVGSLPE------PILEFL 566

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  S       + ++G  VG+    E ++++  L++L+      VS  S
Sbjct: 567  EEWSM-ENLEEVSPSAIADATKIFVNGAWVGI--HREPDQLMTTLKKLRRQMDIIVSEVS 623

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNI-SLPSEESQN------------ 597
            ++ D  +      +  G      L     K     R+I  L   +  N            
Sbjct: 624  MVRDIRDREIRIYTDAGRVCRPLLIVEDQKLALRKRHIDQLKDIDEANKYTWSDLVGGGV 683

Query: 598  IELIGPFEQ-VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656
            +ELI   E+   M    P+    G       TH EIHP  +L V A++ P+ DHNQSPRN
Sbjct: 684  VELIDSMEEETSMIAMMPEDLRSGVY-CDTHTHCEIHPAMILGVCASIIPFPDHNQSPRN 742

Query: 657  MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
             YQ  M KQ MG        R D   + L  PQ P+V T +      +E P G NAIVA+
Sbjct: 743  TYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFNELPAGINAIVAI 802

Query: 717  LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAK--- 773
            L+Y+GY+ ED++I+N S++DRG+     Y++      ++ N  +  ++L  +    K   
Sbjct: 803  LSYSGYNQEDSVIMNNSAIDRGLFRSVFYRSYR---DNEANLDNANEELIEKPTREKCSG 859

Query: 774  ---SLHSVIDSDGLPYVGQMIHPGEPYC-------SIYDKTTNSWRTNSRK-------GS 816
               SL+  +D DG+   G  +   +           I D    + +   ++        S
Sbjct: 860  MRHSLYDKLDEDGIISPGMRVSGDDVIIGKTVALPDIDDDLDATGKKYPKRDASTFLRSS 919

Query: 817  ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS 876
            E+  VD V + + N  N  +   IR R  R P IGDKF+SRHGQKG    ++   DMPF+
Sbjct: 920  ETGIVDQVMLSLNNDGN--KFVKIRMRSVRLPQIGDKFASRHGQKGTMGIMYRQEDMPFT 977

Query: 877  GVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTD 936
               G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF ++V          
Sbjct: 978  A-EGLTPDIIINPHAVPSRMTIGHLIECLQGKLSANKGEIGDATPFNDTVN--------- 1027

Query: 937  ESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVR 996
                 V ++  +L   G++  G EV+Y+G  G +LT +IF GP YYQRL+HMV DK   R
Sbjct: 1028 -----VQKISGLLCEYGYHLRGNEVMYNGHTGKKLTTQIFFGPTYYQRLKHMVDDKIHSR 1082

Query: 997  STGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSD-YHVADVCSL 1055
            + G +  + RQP++GR R GG+RFGEMERD  ++HGA   L +RL   SD YHV  VC+ 
Sbjct: 1083 ARGPIQMMNRQPMEGRARDGGLRFGEMERDCQISHGATQFLRERLFEVSDPYHVY-VCNN 1141

Query: 1056 CGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELA 1115
            CG ++ A                          C AC+    +  V +PY  + L  EL 
Sbjct: 1142 CGLIVVANL------------------RTNSFECKACRNKTQVSAVRIPYACKLLFQELM 1183

Query: 1116 AMNI 1119
            +M+I
Sbjct: 1184 SMSI 1187


>gi|307103930|gb|EFN52187.1| hypothetical protein CHLNCDRAFT_59036 [Chlorella variabilis]
          Length = 1175

 Score =  365 bits (936), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 297/1095 (27%), Positives = 478/1095 (43%), Gaps = 124/1095 (11%)

Query: 71   FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSM 130
             G  P+ML++  C+L G   + L  L E   + GGYF++NG E+V  +      N+ + +
Sbjct: 152  LGDVPIMLRSDYCNLSGRSERDLCDLGECPYDQGGYFVINGSEKVLIAQERMANNH-VYV 210

Query: 131  VRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGK-EYL---LPV 186
             R S   +     +   V+    +  S++ +K+     G    G  ++    Y+   +P+
Sbjct: 211  FRKSQPSKYAYVAECRSVVEGSTRTVSTMQVKMLSRA-GQKGAGQCIRASIPYVRADIPI 269

Query: 187  GIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQ 246
             I+ +AL    D +I  H+   + +    E      P + E   I   EV          
Sbjct: 270  LIIFRALGFVADKDILEHIVYDFGDTTMME---ALRPSIEEAFPIQSQEV---------- 316

Query: 247  CLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLN----DNNDKFNLLIFMLQKLFS 302
             L +IG+    +  G    +    A  +++  +  H+         K     +++ +L  
Sbjct: 317  ALDYIGKRGSTI--GATRNARIQYARELLQKELLPHVGMEEFCETKKAYFFGYVIHRLLL 374

Query: 303  LVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFN 362
            +       D+ D   N+ + L G L+    ++      +  +  +Q  + + GK+ +  +
Sbjct: 375  VALGRREEDDRDHYGNKRLDLGGPLLANLFRQLFRKLSKDVRGYVQKCV-DKGKEINLTS 433

Query: 363  LANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFR 422
              N K  + +     + T    ++  G +          R G +    RL +   +S  R
Sbjct: 434  AIN-KDTITRGLRYSLATGNWGVVGAGEV----------RPGVSQVLNRLTYASTLSHLR 482

Query: 423  AVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNI 482
             ++      G +    R+L    WG +CP  TP+G+ CGL+ ++     + S   +   +
Sbjct: 483  RINSPIGREG-KIAKPRQLHNSQWGMICPAETPEGQACGLVKNLALMTYI-SVGCASNPV 540

Query: 483  RDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV--IPSSEIEKVVAH 540
             DF +   +             L ++  S  P    + ++G  VG+   P + +E + A 
Sbjct: 541  LDFLQEWAT-----------EDLEEISPSVIPKATKIFVNGVWVGIHRDPQTLVETLRAM 589

Query: 541  LRRLKVSAASVIPDDLEVGYVPL--SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNI 598
             R++ +S    +  D+ +  + L    G     L++       V+    I+L + E    
Sbjct: 590  RRQVDISTEVGVVHDIRLQELRLYTDYGRCCRPLFIVEDQAVKVKKRDIINLQNREETGF 649

Query: 599  ELIGPFEQVFME------------------IRCPDGGDGGRRNAFPA--THEEIHPTGML 638
                  E  ++E                  +R     +     +  A  TH EIHP  +L
Sbjct: 650  TWQSMIEAGYIEYVDVEEEETTMIAMFINDLRLARIAEDAATASSIALYTHCEIHPAMIL 709

Query: 639  SVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTY 698
             V A++ P+ DHNQSPRN YQ  M KQ MG  V   + R D + Y L  PQ P+V T   
Sbjct: 710  GVCASIVPFPDHNQSPRNTYQSAMGKQAMGMYVTNYQVRMDTQGYVLFYPQKPLVTTRNM 769

Query: 699  TKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNK 758
                  E P G N IVA+  Y+GY+ ED+ ++N+SS+DRG+     +++   +    G+ 
Sbjct: 770  EYLHFRELPAGINTIVAIACYSGYNQEDSTMMNQSSIDRGIFRSIFFRSYKTEEKKQGSL 829

Query: 759  VDRGQKLFRRNKDAKSLHSV---IDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTN 811
            V    +   R   A + H     +D DG+   G  +   +        I D  +   +  
Sbjct: 830  VQESIERPNREITAGTRHGTYDKLDDDGIAPPGTRVSGDDIVIGKTSPIPDDGSGLPQRY 889

Query: 812  SRKG-------SESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVC 864
            S+K        SES  +D V V      +  +   +R R  R P +GDKF+SRHGQKG  
Sbjct: 890  SKKDASTALRHSESGMIDSVLV--TTGADGQRFVKMRVRSVRIPQVGDKFASRHGQKGTI 947

Query: 865  SQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFAN 924
               +   DMPFS   G+ PDLIINPHA PSRMTI  L+E++ +K  +  GK  DATPF +
Sbjct: 948  GITYTQEDMPFSA-EGISPDLIINPHAIPSRMTIGHLVEALMSKVAACMGKEGDATPFTS 1006

Query: 925  SVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQR 984
                             VD +   L  CG+   G EV+Y+G  G +L  +IF+ P YYQR
Sbjct: 1007 VT---------------VDNISAALHRCGYQSRGWEVMYNGHTGRQLQAQIFLNPTYYQR 1051

Query: 985  LRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTC 1044
            L+HMV DK   R  G +  +TRQP++GR R GG+RFGEMERD +++HGAA  L +RL+  
Sbjct: 1052 LKHMVDDKIHSRGRGPVQILTRQPVEGRARDGGLRFGEMERDCIISHGAAAFLKERLYDQ 1111

Query: 1045 SDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMP 1104
            SD +   VCS+CG +  A     Q                    C AC+ + G+  V +P
Sbjct: 1112 SDAYRVHVCSVCGLIAVANLKKNQ------------------FYCTACKNTTGIVQVFIP 1153

Query: 1105 YVFRYLAAELAAMNI 1119
            Y  + L  EL AM I
Sbjct: 1154 YACKLLFQELMAMCI 1168


>gi|256081821|ref|XP_002577166.1| DNA-directed RNA polymerase III subunit [Schistosoma mansoni]
 gi|360043958|emb|CCD81504.1| putative dna-directed RNA polymerase III subunit [Schistosoma
            mansoni]
          Length = 1128

 Score =  365 bits (936), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 321/1144 (28%), Positives = 506/1144 (44%), Gaps = 163/1144 (14%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR   ++Y G+++ DV F  +     V ++    G+ P+MLK+  C L G    +L+ LK
Sbjct: 79   CRLRDLTYAGEILVDVTF--VRQNEVVSKKGVLIGRMPIMLKSSICVLNGKSPSELMRLK 136

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            E   + GGYFI+ G E+V   V++ +Q     ++     D + G            K ++
Sbjct: 137  ECPLDPGGYFIIGGTEKV---VLMQEQTSKNRLIIEE--DSKRGLVCSVTSSSAQTKSKT 191

Query: 158  SVTLK--LYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
            ++  K   +YL + S  +          +P+ I+ KA+  T+D E+   +        ++
Sbjct: 192  NIVTKDDKFYLSHNSFIVD---------VPIAILFKAMNITSDQELLQLIGT------EE 236

Query: 216  EKGAVGSPLVSERVKIILAEVQDLS--LTTRLQCLQH-----IGEHFQPVIDGLQSESYY 268
               A   P +   ++  +    D    L +RL+  ++      G   +   + L+++   
Sbjct: 237  SVWANFVPSLKLCLEYNIHTCLDACNWLHSRLRQPRYRTAFGAGRTLRTAANILETDIIL 296

Query: 269  AVAETVIRDYIFVHLNDNNDKFNLLIFMLQKL---FSLVDHTSV-SDNPDSLQNQEILLP 324
             + +  +RD I  H+      F    F L ++     L +   +  D+ D   N+ I L 
Sbjct: 297  EI-QRFLRDIIITHVEMEKLNFAPRAFFLGQMVRYLILANEKRIPPDDRDFYGNKRIELA 355

Query: 325  GHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIET 384
            G L+ +  ++  + +  +   L   +I+   +   F    +IK  M      +  +S   
Sbjct: 356  GSLLALLFEDVFKTF-NEDLWLTVSKIDTKRRCTPFDISRHIKTWMITEQLNRAISSGNW 414

Query: 385  MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLP 443
            ++K  R+          R G T    RL+++  +         + F   R  S  R +  
Sbjct: 415  IIKRFRM---------MRHGVTQVVSRLSYVAALGHM--TRMTSQFEKTRKVSGPRSIHA 463

Query: 444  ESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP 503
              WG +CP  TP+GE CGL+ ++   C V    D    I   S   T             
Sbjct: 464  SQWGLICPSDTPEGEACGLVKNVALMCHVTVEVDDAHLIELISNYYT------------- 510

Query: 504  SLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL 563
              P            + ++G+ +G   +    K+   +R L+ S           G+V +
Sbjct: 511  -FPLYQMRYAKNEYVIYVNGKPIGF--TQHPGKLCVLIRGLRRSGRI-------HGFVSV 560

Query: 564  SLGGAYPGLYLFTSPPKFVRP------------------VRNISLPSEESQNIELIGPFE 605
             +  AY  +++ +   +F RP                  +R+  L  ++     L+   +
Sbjct: 561  YIKQAYQCVHVVSDGGRFCRPYIILCNGRPLVTESVLQDLRHNVLNWDDLLKKGLVEYLD 620

Query: 606  -------QVFMEIRC-PDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNM 657
                    V M+  C  DG         PAT        +L VVA L PY DHNQSPRN 
Sbjct: 621  VNELNDCLVAMDESCLTDGNHYTHMEIDPAT--------ILGVVAGLIPYPDHNQSPRNT 672

Query: 658  YQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVL 717
            YQC M KQ +G      + R D     +  PQ P+V++ T      DE P G NA+VA++
Sbjct: 673  YQCAMGKQAIGTVALNQQIRFDTLQCQMVYPQKPLVQSKTIQMMHFDELPAGQNAVVAIM 732

Query: 718  AYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR--GQKLFRRNKDAKS 774
            +Y+GYD+EDA+++N++S+DRG     +Y+   + L    N V DR  G  + R     + 
Sbjct: 733  SYSGYDVEDALVINQASIDRGFARACVYRRSGVHLKMHENAVYDRLMGPSIERETGVLRR 792

Query: 775  LHSVIDSDGLPYVGQ-------MIHPGEPYCSIYDKTTNSWRTNSR------KGSESVFV 821
               V+ +DG+ Y+G        +I+   P  S      N+     +      KG E  +V
Sbjct: 793  GDEVLQADGVAYIGACVNDRQILINKEMPVVSSSAVLDNAGSLKFKRCPVDYKGIEPSYV 852

Query: 822  DYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGM 881
            + V      S+       I  R TR P +GDKFSSRHGQKGV   +    D+PFS   G+
Sbjct: 853  EKVM--FSTSEGNQAVVKILLRQTRRPEVGDKFSSRHGQKGVVGLIVRQEDLPFS-TNGL 909

Query: 882  RPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSL 941
             PD+I+NPH FPSRMT+  LLE + +K G++ GK  D + F+       GD     S+ L
Sbjct: 910  TPDIIMNPHGFPSRMTVGKLLEVLGSKAGAIEGKIRDGSAFS-------GDPAEVLSQVL 962

Query: 942  VDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTM 1001
            +D         G++Y G E+LYSGV G  L   I+ GPVYYQRL+HMV DK   RS G +
Sbjct: 963  IDH--------GYHYLGKEILYSGVTGAPLEAFIYFGPVYYQRLKHMVMDKVHARSRGPV 1014

Query: 1002 DQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLT 1061
              +TRQP +GR R GG+R GEMERD  +A+G + LL +RL   SD + A VC  CG + T
Sbjct: 1015 TALTRQPTEGRSREGGLRVGEMERDCFIAYGTSQLLLERLLLSSDAYDACVCEKCGLLAT 1074

Query: 1062 ATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKI 1121
            +    P                     C  C++S+ + +V MPY  + L  EL  M I  
Sbjct: 1075 S----PN-------------------WCQYCRSSRQVVSVRMPYACKLLFQELMCMRILP 1111

Query: 1122 TLQL 1125
             L+L
Sbjct: 1112 RLRL 1115


>gi|391332506|ref|XP_003740675.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
            [Metaseiulus occidentalis]
          Length = 1178

 Score =  365 bits (936), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 319/1145 (27%), Positives = 506/1145 (44%), Gaps = 144/1145 (12%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   V    ++   G+ P+ML++  C L G   
Sbjct: 107  MPNEARLRNLTYSAPLYVDIIKTVIRDGEDPVETQHQKTFIGKIPIMLRSSYCLLNGLSD 166

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V     L  Q    +     F+ +   Y  KA    
Sbjct: 167  RDLSELNECPLDPGGYFIINGSEKV-----LIAQEKMATNTVYVFQMKDGKYAFKAECRS 221

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  +  G   +     G+  +         +P+ IV +AL    D +
Sbjct: 222  CIEHSSRPTSTLWVNMMARGGSGVKKASIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 281

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +++           P + E VK  L E     +  +   L  IG   +    
Sbjct: 282  ILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGARP 326

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+   +    A  +++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 327  GVTKANRIKYAREILQKEMLPHVGVSDFCETKKAYYLGYMVHRLLLAALGRRELDDRDHY 386

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +   ++ L K  ++   +  + GK F+   LA IK       ++
Sbjct: 387  GNKRLDLAGPLMAFLFRGLFKN-LTKEVRMFAQKFIDKGKDFNL-ELA-IK-------TR 436

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   ++  L TG    Q     Q R G +    RL +   +S  R V+      G +  
Sbjct: 437  IITDGLKYSLATGNWGDQKKAH-QARPGVSQVLNRLTYASTLSHLRRVNSPIGRDG-KLA 494

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G   GL+ ++     + SY              + IL  L
Sbjct: 495  KPRQLHNTLWGMICPAETPEGHAVGLVKNLA----LMSYIS-------VGSQPSPILEFL 543

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  S       + ++G  VG+    + E+++  L++L+      VS  S
Sbjct: 544  EEWSM-ENLEEIAPSAIAEATKIFVNGCWVGI--HRDPEQLMLTLQKLRRQMDIIVSEVS 600

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEE------------SQNI 598
            ++ D  +      +  G      L     K +    +I    E             S  +
Sbjct: 601  MVRDIRDREIRIYTDAGRICRPLLIVENQKLLLKRHHIDKLKERECSYYSWQDLVASGVV 660

Query: 599  ELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQSPR 655
            E I   E+   M    PD     +  A+ +T  H EIHP+ +L V A++ P+ DHNQSPR
Sbjct: 661  EYIDTLEEETVMLAMTPDDLTQDKALAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPR 720

Query: 656  NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
            N YQ  M KQ MG  +     R D   + L  P  P+  T +       E P G NAIVA
Sbjct: 721  NTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLTTTRSMEYLRFRELPAGINAIVA 780

Query: 716  VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV--DRGQKLFRRNKDA- 772
            +++YTGY+ ED++ILN S+VDRG      Y++      D  NK   D+ +   +  ++  
Sbjct: 781  IMSYTGYNQEDSVILNASAVDRGFFRSVFYRS----YKDSENKRMGDQEETFEKPTRETC 836

Query: 773  ----KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------K 814
                 +++  +D DG+   G  +   +       ++ +   +   TN R          +
Sbjct: 837  QGMRNAIYDKLDDDGIIAPGTRVSGDDVIIGKTITLPENDDDLDSTNKRYSKRDASTFLR 896

Query: 815  GSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMP 874
             SE+  VD V + + NS    +   IR R  R P IGDKF+SRHGQKG C   +   DMP
Sbjct: 897  NSETGIVDQVMLTI-NSDGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGVTYRQEDMP 954

Query: 875  FSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTG 934
            F+ V G+ PD+IINPHA PSRMTI  L+E +  K  S  G+  DATPF ++V        
Sbjct: 955  FT-VEGLTPDIIINPHAIPSRMTIGHLIECLQGKVASNKGEIGDATPFNDAVN------- 1006

Query: 935  TDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQ 994
                   V ++  +L   G++  G EV+Y+G  G ++  +IF+GP YYQRL+HMV DK  
Sbjct: 1007 -------VQKISNILMEYGYHLRGNEVMYNGHTGRKVNAQIFLGPTYYQRLKHMVDDKIH 1059

Query: 995  VRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCS 1054
             R+ G +  + RQP++GR R GG+RFGEMERD  ++HGAA  L +RL   SD +   +C+
Sbjct: 1060 SRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFFASDPYRTHICN 1119

Query: 1055 LCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAEL 1114
            +CG +  A      +  I E              C  C+    +  + +PY  + L  EL
Sbjct: 1120 ICGLIAIANL----RNNIFE--------------CKGCRNKTQISQITLPYACKLLFQEL 1161

Query: 1115 AAMNI 1119
             +MNI
Sbjct: 1162 MSMNI 1166


>gi|57641018|ref|YP_183496.1| DNA-directed RNA polymerase subunit B [Thermococcus kodakarensis
            KOD1]
 gi|57159342|dbj|BAD85272.1| DNA-directed RNA polymerase, subunit B [Thermococcus kodakarensis
            KOD1]
          Length = 1123

 Score =  364 bits (935), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 327/1212 (26%), Positives = 522/1212 (43%), Gaps = 219/1212 (18%)

Query: 15   LVRHHIESFDYMLDEGLSEMFDHCRQA-------KISYTGKLMADVEFQY---------- 57
             VR H++S++  +D GL ++ +   +        K+ +    +   EFQ           
Sbjct: 30   FVRQHLDSYNAFIDHGLQDVVNEFGEVVPDIPNFKVKFGKIRIGQPEFQEAQGQRRPLYP 89

Query: 58   LDA-------GSPVVRE-------------RFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            +DA        +P+  E                 G+ P+MLK++ C L G   ++L+ L 
Sbjct: 90   MDARIRNLTYSAPLYLEMIPVVNGIEQEPVEVRIGELPIMLKSKACRLYGLSDEELIKLG 149

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            E+  + GGYFI+NG ERV  S+                    +   +K +V R  R  Q+
Sbjct: 150  EDPKDPGGYFIINGSERVIVSI-------------------EDLAPNKTLVERDER--QN 188

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGI-----------VLKALVDTNDLEIFNHLT 206
             V  K++   +G   L    + K+ +L V I           V++AL    D EI   ++
Sbjct: 189  KVVAKVFSYRHGYRALITVERKKDGILYVTIPNVPKPVKFVYVMRALGLLTDKEIVEAVS 248

Query: 207  CCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLS-LTTRLQCLQHIGEHFQPVIDGLQSE 265
                            P + +   ++   ++D S ++T+ + L +IG    P   G   E
Sbjct: 249  --------------DDPRIQQ---VLFDNLEDASDISTQEEALDYIGRLALP---GQPKE 288

Query: 266  SYYAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEI 321
                 AE +I + +  H+     +   K   L  M  K+  L       D+ D   N+ +
Sbjct: 289  YRLRRAEHIIDNNLLPHMGVDPENRRAKAYYLGMMALKVLELSLGLRGEDDKDHYANKRL 348

Query: 322  LLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTS 381
             L G L+    +      ++  +  +    +  G+++ F N+     V        +   
Sbjct: 349  KLAGDLLKDLFRVAFGQLVKDMQYQMTKTYQRKGERYTFENIQRF--VRNSIRPDVLSER 406

Query: 382  IETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKL 441
            IE  L TG            R G +   +R N++  +S  R V    S       + R L
Sbjct: 407  IEHALATGSWPGG-------RTGVSQLLDRTNYMSTLSHLRRVTSPLSRDQPHFEA-RDL 458

Query: 442  LPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGM 501
                WG +CP  TP+G  CGL+ ++    ++ +    R  +R++          L+ +G+
Sbjct: 459  HGTHWGRICPTETPEGPNCGLVKNLALMSQITTGIPER-EVREY----------LMKMGV 507

Query: 502  IPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSE--IEKVVAHLRRLKVSAASVIP--DDLE 557
            +P   +      P +  V L+G ++G +      +E++ A  R  K+S    +   +D E
Sbjct: 508  VPIEER---RPAPGLYRVYLNGVLIGTVEDGRKLVERIRADRRAGKISDVINVALYEDEE 564

Query: 558  VGYVPLSLGGAY---PGLYLFTSPPKFVRP-VRNISLPSEESQNIELIGPFEQVFMEIRC 613
            V  V ++        P + +    PK  R  V  I   +    ++  +G  E +  E   
Sbjct: 565  VKEVYINSDDGRVRRPLIVVENGKPKLTREHVEGIKNGTLTWSDLIRMGVIEYLDAE--- 621

Query: 614  PDGGDGGRRNAFPAT----------HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMA 663
                     NA+ AT          H E+ P  +L + A+L PY +HN +PRN Y   MA
Sbjct: 622  ------EEENAYVATWPWEVTEEHTHLELMPAAILGIPASLVPYPEHNAAPRNTYGAGMA 675

Query: 664  KQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYD 723
            KQ++G      + R D + + +  PQ P+V +      G ++ P G N +VAVL+Y GY+
Sbjct: 676  KQSLGLGWANFRIRVDTRGHLMHYPQVPLVNSRIMKAVGFEDRPAGQNFVVAVLSYHGYN 735

Query: 724  MEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVDR------------GQKLFRRNK 770
            MEDA+I+NK+S++RG+     ++T E  +    G + D             G+K +R   
Sbjct: 736  MEDAVIINKASIERGLARSTFFRTYEAEEKRYLGGQKDNFEVPSPNIQGYLGEKYYRH-- 793

Query: 771  DAKSLHSVIDSDGLPY-----------VGQMIHPG--EPYCSIYDKTTNSWRTNSR--KG 815
                    +D DGL +           VG+   P   E   S+        R  S   + 
Sbjct: 794  --------LDEDGLIFPESKVEGKDVLVGRTSPPRFIEEQSSLGSMVLQGRRETSVTVRP 845

Query: 816  SESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPF 875
            SE   VD V V    + +  +   +  R  R P +GDKF+SRHGQKGV   + P  DMP+
Sbjct: 846  SEKGVVDKVIV--TETGDGTKLVKVTVRDLRIPELGDKFASRHGQKGVIGLIVPQEDMPW 903

Query: 876  SGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGT 935
            +  +G+ PDLI+NPH  PSRMT+  L+E++  K  SL G+ +D T F    ++       
Sbjct: 904  TE-SGIVPDLIVNPHGIPSRMTVGQLIEAIGGKVASLTGRRVDGTAFIGEPEEKLRKELE 962

Query: 936  DESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQV 995
                             GF + G E++Y G+ G  L  +IFIG +YYQRL HMV+DK   
Sbjct: 963  ---------------ELGFKHSGREIMYDGITGRRLEADIFIGVIYYQRLHHMVADKMHA 1007

Query: 996  RSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSL 1055
            RS G +  +T+QP +GR R GG+RFGEMERD L+ HGAA LL +RL   SD     VC  
Sbjct: 1008 RSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLIGHGAAMLLIERLLEESDKTEVWVCES 1067

Query: 1056 CGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELA 1115
            CG +     +  ++R               KV C  C   + +  V M Y F+ L  EL 
Sbjct: 1068 CGHLA----LEDKRRG--------------KVYCPVCGEDERISKVEMSYAFKLLLDELK 1109

Query: 1116 AMNIKITLQLGD 1127
            AM I+ +L+L D
Sbjct: 1110 AMVIRPSLRLKD 1121


>gi|242038711|ref|XP_002466750.1| hypothetical protein SORBIDRAFT_01g013470 [Sorghum bicolor]
 gi|241920604|gb|EER93748.1| hypothetical protein SORBIDRAFT_01g013470 [Sorghum bicolor]
          Length = 1218

 Score =  364 bits (935), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 312/1147 (27%), Positives = 495/1147 (43%), Gaps = 170/1147 (14%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPV--VRERFNF-----GQFPVMLKTRRCHLQGADS 90
             R   ++Y+  L  DV ++ +  G     V E  ++     G+ P+ML++  C L     
Sbjct: 159  ARLRNLTYSAPLYVDVSYRVMKKGHDCEEVTETADYPKVFIGKVPIMLRSSYCTLYQQSE 218

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V    ++ ++    + V   F+ R+         +R
Sbjct: 219  KDLTELGECPYDQGGYFIINGSEKV----LIAQEKMSTNHV-YVFKKRQPNKFAYVAEVR 273

Query: 151  CVRKDQSSVTLKLYYLL------NGSVRLGFWLQGKEYL---LPVGIVLKALVDTNDLEI 201
             + ++Q+     ++  +       G     +      Y+   +P+ IV +AL    D +I
Sbjct: 274  SMAENQNRPASSMFVRMLSRAGAKGGSSGQYIRATLPYIRADIPIIIVFRALGFVADKDI 333

Query: 202  FNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDG 261
              H+  CYD              + E ++  L E     +  +   L +IG+    V  G
Sbjct: 334  LEHI--CYD---------FSDTQMMELLRPSLEEA--FVIQNQQVALDYIGKRGATV--G 378

Query: 262  LQSESYYAVAETVIRDYIFVHLND----NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQ 317
            +  E     A+ +++  +  H+         K     +++ +L          D+ D   
Sbjct: 379  VTREKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLMCALGRRAEDDRDHYG 438

Query: 318  NQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQ 377
            N+ + L G L+    +  +                +NGK+       N++  ++   +K 
Sbjct: 439  NKRLDLAGPLLGGLFRMCV----------------DNGKE------VNLQFAIK---AKT 473

Query: 378  IGTSIETMLKTGRL--ATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
            I + ++  L TG    A Q G     RAG +    RL +   +S  R ++      G + 
Sbjct: 474  ITSGLKYSLATGNWGQANQAGT----RAGVSQVLNRLTYASTLSHLRRLNSPIGREG-KL 528

Query: 436  TSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV 495
               R+L    WG +CP  TP+G+ CGL+ ++     +                   IL  
Sbjct: 529  AKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYIT-----------VGSAANPILEF 577

Query: 496  LIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK----VSAASV 551
            L   G   +  ++  +  P    + ++G  VG+  + ++  +V  LRRL+    V+    
Sbjct: 578  LEEWG-TENFEEISPAVIPQAAKIFVNGCWVGIHRNPDL--LVKTLRRLRRQIDVNTEVG 634

Query: 552  IPDDLEVGYVPL--SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN-----------I 598
            +  D+ +  + L    G     L++       ++    I+L   E+ +           I
Sbjct: 635  VVRDIRLKELRLYTDYGRCSRPLFIVEGQRLLIKKAHIIALQHRETPDEGWHELVSKGYI 694

Query: 599  ELIGPFEQ----VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQ 652
            E I   E+    + M I           +A+  T  H EIHP+ +L V A++ P+ DHNQ
Sbjct: 695  EYIDTEEEETTMISMTISDLHNARHNPEDAYSETYTHCEIHPSLILGVCASIIPFPDHNQ 754

Query: 653  SPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNA 712
            SPRN YQ  M KQ MG  V   + R D   Y L  PQ P+V T         + P G NA
Sbjct: 755  SPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 814

Query: 713  IVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA 772
            IVA+  Y+GY+ ED++I+N+SS+DRG      +++   +    G  V   ++  R N++ 
Sbjct: 815  IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVK--EEFGRPNREN 872

Query: 773  K-----SLHSVIDSDGLPYVGQMIH---------------PGEPYCSIYDKTTNSWRTNS 812
                    +  +D DGL   G  +                  +   S Y K  +S    S
Sbjct: 873  TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIPQDDAQGQASRYSKRDHS---TS 929

Query: 813  RKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDID 872
             + SES  VD V +   N+  L +   +R R  R P IGDKFSSRHGQKG     +   D
Sbjct: 930  LRHSESGMVDQVLL-TTNADGL-RFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 987

Query: 873  MPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGD 932
            MP++ + G+ PD+I+NPHA PSRMTI  L+E +  K  +  G+  DATPF +        
Sbjct: 988  MPWT-IEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAQMGREGDATPFTDVT------ 1040

Query: 933  TGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDK 992
                     VD + + L  C +   G E +Y+G  G +LT  IF+GP YYQRL+HMV DK
Sbjct: 1041 ---------VDNISKALHRCNYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRLKHMVDDK 1091

Query: 993  FQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADV 1052
               R  G +  +TRQP +GR R GG+RFGEMERD ++AHGAA+ L +RL   SD +   V
Sbjct: 1092 IHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAFFLKERLFDQSDAYRVHV 1151

Query: 1053 CSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAA 1112
            C  CG +  A                          C  C+    +  V +PY  + L  
Sbjct: 1152 CEKCGLIAIANL------------------KKNSFECRGCKNKTDIVQVHIPYACKLLFQ 1193

Query: 1113 ELAAMNI 1119
            EL AM I
Sbjct: 1194 ELMAMAI 1200


>gi|398404063|ref|XP_003853498.1| DNA-directed RNA polymerase II subunit RPB2 [Zymoseptoria tritici
            IPO323]
 gi|339473380|gb|EGP88474.1| hypothetical protein MYCGRDRAFT_99853 [Zymoseptoria tritici IPO323]
          Length = 1231

 Score =  364 bits (934), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 320/1143 (27%), Positives = 494/1143 (43%), Gaps = 184/1143 (16%)

Query: 71   FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSM 130
             G+ PVMLK++ C L+     +L + +E   + GGYFI+NG E+V     L  Q    + 
Sbjct: 165  IGKLPVMLKSKICALRNRSEAELYAFQECPFDQGGYFIINGSEKV-----LIAQERSAAN 219

Query: 131  VRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLP----- 185
            +   FR +       A +   V +    ++     L N +V      Q  +  LP     
Sbjct: 220  IVQVFRKKGTNTPVVAELRSAVERGTRLISSMQVKLCNQAVAAQHSGQTIKVSLPYIRAD 279

Query: 186  --VGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAE---VQDLS 240
              + IV +A+   +D +I  H+  C +E  +          + E++K  L E   +QD  
Sbjct: 280  VPIAIVFRAMGVVSDEDILAHI--CPEEDTQ----------MREKLKPCLEEAFVIQDHD 327

Query: 241  LTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDN----NDKFNLLIFM 296
            +      L HIG   Q      +   Y   A  +++     H++        K   L +M
Sbjct: 328  V-----ALDHIGRRGQQQGTKDRRIRY---ARDIMQKEFLPHISQEEGSETKKAFFLGYM 379

Query: 297  LQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGK 356
            + ++       +  D+ D    + + L G L+    + K +  ++  ++ +   +E  GK
Sbjct: 380  VNRMLQCALGRTEEDDRDHFGKKRLDLAGPLMAQVFRLKFQQLVKDMRQYLHRCVET-GK 438

Query: 357  KFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLR 416
             F      NI   ++ N    I + +   L TG    Q       +AG +    R  +  
Sbjct: 439  DF------NIALAVKTNI---ITSGLRYCLATGNWGDQKKA-ASAKAGVSQVLNRYTYAS 488

Query: 417  FISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYY 476
             +S  R  +      G +    R+L    WG +CP  TP+G+ CGL+ +++  C V    
Sbjct: 489  TLSHLRRTNTPIGRDG-KIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVTVGT 547

Query: 477  DSRGNIRDFSKMRTSILRVLIGVGMIPSL-PKLVKSGPPAVLSVLLDGRVVGVIPSS-EI 534
                 I DF + R        G+ ++    P  VK        V L+G  VGV  S+ ++
Sbjct: 548  PGE-PIVDFMRQR--------GMDLLEEHDPNQVKDA----TKVFLNGTWVGVHKSAGQL 594

Query: 535  EKVVAHLRR--LKVSAASVIPDDLEVGY-VPLSLGGAYPGLYLFTSPPKFVRP------- 584
             + +  LRR  L     ++I D  E    V    G     L++  + PK + P       
Sbjct: 595  TETLRQLRRKGLLSFEVTIIRDVREREIRVFTDAGRVCRPLFVVDNNPKSLEPGTLMLKQ 654

Query: 585  ------------VRNISLPSEESQNIELIG---------------PFEQVFMEIRCPDGG 617
                        + ++   SEE +  +L G                 E+V M I  P+  
Sbjct: 655  DHVERLHQDQELLASLEGVSEEDREQQLFGWKGLVTSGVVEYLDAEEEEVAMIIMTPEDL 714

Query: 618  DGGR--RNAFPA----------------------THEEIHPTGMLSVVANLTPYSDHNQS 653
            +  R  RN                          TH EIHP  +L + A++ P+ DHNQS
Sbjct: 715  EEHRVMRNGMAVEELKVDPHRRIKPKPNPQVRTYTHCEIHPAMILGICASIIPFPDHNQS 774

Query: 654  PRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAI 713
            PRN YQ      TMG ++     R D     L  PQ P+  T +       + P G NAI
Sbjct: 775  PRNTYQA-----TMGVTLTNYNVRMDTMANVLYYPQKPLATTRSMEFLKFRDLPAGQNAI 829

Query: 714  VAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAK 773
            VA+  Y+GY+ ED++I+N+SS+DRG+     Y+         G  V    +   R+   +
Sbjct: 830  VAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYMDQEKRVGMSVVESFEKPTRSDTMR 889

Query: 774  SLHSV---IDSDGLPYVGQMIH----------PGEPYCSIYDKTTNSWR----TNSRKGS 816
              H     +D DG+   G  +           P  P      + T        +   + +
Sbjct: 890  MQHGTYDKLDEDGIISPGARVSGTDILIGKTAPMPPDAEELGQRTKLHVKRDVSTPLRST 949

Query: 817  ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS 876
            E+  VD V +   N++ L +   +R R T+ P IGDKF+SRHGQKG     +   DMPFS
Sbjct: 950  ENGVVDQVLL-TTNTEGL-RFVKVRTRVTKVPQIGDKFASRHGQKGTIGITYRQEDMPFS 1007

Query: 877  GVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTD 936
               G+ PD+IINPHA PSRMTIA L+E + +K G+L G+  DATPF              
Sbjct: 1008 A-DGLTPDIIINPHAIPSRMTIAHLIECLLSKVGALQGQEGDATPF-------------- 1052

Query: 937  ESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVR 996
             ++  V  + E+L++ GF   G EV+Y+G  G +L  ++F+GP YYQRLRHMV DK   R
Sbjct: 1053 -TEVTVTSISEILKSNGFQQRGFEVMYNGHTGKKLNAQVFLGPTYYQRLRHMVDDKIHAR 1111

Query: 997  STGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLC 1056
            + G +  +TRQP++GR R GG+RFGEMERD ++AHGA+  L +RL   SD     +C LC
Sbjct: 1112 ARGPLQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLLDVSDAFRVHICELC 1171

Query: 1057 GSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAA 1116
            G +     I  Q                 +  C  C+    +  + +PY  + L  ELAA
Sbjct: 1172 GLMTPIASIKKQ-----------------QFECRPCKNKTKIAQIIIPYAAKLLFQELAA 1214

Query: 1117 MNI 1119
            MN+
Sbjct: 1215 MNV 1217


>gi|156098891|ref|XP_001615461.1| DNA-directed RNA polymerase, beta subunit [Plasmodium vivax Sal-1]
 gi|148804335|gb|EDL45734.1| DNA-directed RNA polymerase, beta subunit, putative [Plasmodium
            vivax]
          Length = 1562

 Score =  364 bits (934), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 226/578 (39%), Positives = 301/578 (52%), Gaps = 94/578 (16%)

Query: 631  EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQT 690
            E+  T  LS + +LTP+SDHNQSPRN+YQCQM KQTMG     + +    K+Y + TPQ 
Sbjct: 986  ELKETSFLSFLGSLTPFSDHNQSPRNIYQCQMLKQTMGIQSLNMMYTFTNKIYRMITPQF 1045

Query: 691  PIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETI 750
            P+V T  Y  YG+D +P+GTNA+VA+LAYTGYDMEDA+I+NKSS +RG+    IY+TE I
Sbjct: 1046 PLVVTRDYELYGVDNFPSGTNAVVAILAYTGYDMEDALIINKSSAERGIFRTHIYKTEII 1105

Query: 751  DLSDD--------GNKV-------------DRGQKLFRRNKDAKSLH--SVIDSDGLPYV 787
            DL  +        GN V               G    + N   +  H   +++ DGLP V
Sbjct: 1106 DLEKNHGRGEFTLGNNVRYTNSSVGSNANGANGNNSGKSNLKFQYEHMGKMLNKDGLPRV 1165

Query: 788  GQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRN 847
             Q I    P  S  +K          KG    +VD V  + K+++N  Q A +R R TR 
Sbjct: 1166 QQKIVELNPLYSYINKANELTVYEKFKGHGEYYVDCVT-NYKSTRN--QIAIVRLRTTRP 1222

Query: 848  PIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAA 907
            P++GDKF+SRHGQKGV S+L+P  DMPFS  +G+ PD+I NPH  PSRMTI ML+ES+  
Sbjct: 1223 PLVGDKFASRHGQKGVVSRLFPHEDMPFSE-SGIVPDVIFNPHGIPSRMTIGMLIESICG 1281

Query: 908  KGGSLHGKFMDATPFANSVKK-----------------------TNGDTGTDESKSLVDE 944
            K   ++GK +DATPF    ++                        NG     E  S   +
Sbjct: 1282 KAACIYGKRIDATPFRKYTQQRSFDNEWIDNCGVKGFLEGKNRGNNGGKKEGEKSSSAHD 1341

Query: 945  L--------------GEMLRTCGFN--------YHGVEVLYSG--VYGTE---------- 970
            +              GE  +    N        Y    +L  G   YGTE          
Sbjct: 1342 VNRSHKRKKKSDPPKGETQKNAKANITYDEKIDYFAKLLLNKGYDYYGTELLYSGIYGVP 1401

Query: 971  LTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLA 1030
            L   IF G +YYQRLRHM  DK QVR TG +  +T QP+KG+K+ GGIR GEMERD L++
Sbjct: 1402 LQAHIFFGVIYYQRLRHMAYDKAQVRRTGPICNLTHQPLKGKKKHGGIRLGEMERDGLIS 1461

Query: 1031 HGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAI---REIGGLPPARAPKKV 1087
            HG ++++++R    SD H   VC  CG +L+          +   R IGG       K  
Sbjct: 1462 HGCSFIINERFLLNSDGHECFVCPQCGLILSPIMQFTCSGEMVKGRSIGG-----KSKMA 1516

Query: 1088 TCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
             C +C  S   + V +PYV RYL  EL  +N+ I L +
Sbjct: 1517 VCKSCGVS--CKIVYVPYVLRYLLNELICLNVTIRLNI 1552



 Score =  115 bits (289), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 123/235 (52%), Gaps = 27/235 (11%)

Query: 385 MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPE 444
             KTG +A++  +  QQ++G+ + A+ +N LRFI+ FRA+HRG  F  ++  S RKLL E
Sbjct: 584 FFKTGNIASEN-IGYQQKSGWVIGADEINSLRFITNFRAIHRGCFFQDVKVLSPRKLLGE 642

Query: 445 SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
           SWGF+CPVHTPDG PCGLLNH++    V   ++S  N      ++  + ++ + V +  +
Sbjct: 643 SWGFICPVHTPDGSPCGLLNHLSQFSYV---HNSASNESHKLNIKLYLKKIGVNVNLDDT 699

Query: 505 LPKLVKSGPPAV-----LSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEV- 558
                 SG P +     + +++D   +  I   +  +VV  L+  K      +    E+ 
Sbjct: 700 ------SGIPTIYEDQTIPIVVDSVPITYISEQDFSRVVYKLKYAKNHNLYSLKAYFEIN 753

Query: 559 GYV--PLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEI 611
            Y+  PL +      + + T P + +RP+ N+ +     + IE I P  Q ++ I
Sbjct: 754 AYLNEPLLMN----SIIINTFPGRLIRPLFNLKM-----KCIEYISPSYQPYVAI 799



 Score = 47.4 bits (111), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 64/324 (19%), Positives = 125/324 (38%), Gaps = 56/324 (17%)

Query: 38  CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
           C+ +  +Y G++   +  +  D    ++    + G  PVM+ +  C+L   + + L    
Sbjct: 174 CKLSARTYEGEITLKINKKTNDE---IISTTVSAGYIPVMVLSNLCNLSSLNKKMLPQKG 230

Query: 98  EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
           E+ + +GG+F+++G  +V R VI PK N  +               +  V + C+  D S
Sbjct: 231 EDESLLGGFFVVSGHLKVIRYVIHPKYNTILLN------------EENKVHMNCLLNDNS 278

Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEY-----LLPVGIVL---------KALVDTNDLEIFN 203
                +Y       +  F+  G  Y      +P+ ++L           L +   + I N
Sbjct: 279 -----VYVNFLSCPKFDFFTYGARYQNSVMAVPLHVILLLLSPIKKKSYLFNKMKMGIKN 333

Query: 204 HLTCCYDEKYKKE---KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIG--EHFQPV 258
                Y E+Y +    K  +    V E+                   L+++G   +F+  
Sbjct: 334 ENAVKYIEQYIQSIFIKNGLNEKEVFEKYN-----------------LKYLGSSSYFRKG 376

Query: 259 IDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQN 318
           I      S      ++++  I  H+   ++KF  +  M + L           N DSL+N
Sbjct: 377 IFRYSIVSDEKKGRSILKYVILPHIQSYSEKFETVCMMFKTLIYSKFKLIARINKDSLEN 436

Query: 319 QEILLPGHLITIYLKEKLEDWLRK 342
             +    HL++  LKE++   L +
Sbjct: 437 HAVTTCSHLLSNLLKEQIVTCLSR 460


>gi|390939172|ref|YP_006402910.1| DNA-directed RNA polymerase subunit B [Desulfurococcus fermentans DSM
            16532]
 gi|390192279|gb|AFL67335.1| DNA-directed RNA polymerase subunit B [Desulfurococcus fermentans DSM
            16532]
          Length = 1166

 Score =  364 bits (934), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 330/1194 (27%), Positives = 519/1194 (43%), Gaps = 182/1194 (15%)

Query: 17   RHHIESFDYMLDEGLSEMFD--HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQF 74
            ++ I+S  +   EG+ E      CR   ++Y   +   V  +  D       +       
Sbjct: 65   KYRIDSPKWTSVEGIEESKTPMECRLRNLTYATPIYVSVRIE--DESGYTREQELKLMDL 122

Query: 75   PVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSS 134
            PVMLK+    L     Q+L+   E+  + GGYFI+NG E+V    I+ +++   + +   
Sbjct: 123  PVMLKSSIDPLSKLTPQELIENGEDPRDPGGYFIINGSEKV----IVAQEDLASNNIIVD 178

Query: 135  FRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALV 194
                    T  A V    R  +S + ++     +G     F  QG ++  P  I++ AL 
Sbjct: 179  VMQEGSSVTHVAKVTSVSRGRRSQLIIERRK--DGVFYASF--QGHKF--PALILMTALG 232

Query: 195  DTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKII----------LAEVQDLSLTTR 244
              ++ EI       Y    K E      P + +  +I+            EV+ L    R
Sbjct: 233  LASEAEIL------YSTSLKPEIQTYLLPSILQVQEILPKLEIPEGASEEEVRRLKEEYR 286

Query: 245  LQCLQH----IGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNND---KFNLLIF-- 295
             + ++     I   F   I G   E     A+ ++ + +  H+  ++    +    +F  
Sbjct: 287  RKVIEEALDFIASKF---IIGRPREERILRAQRLLDERLLPHIGIDSSPETRLKKAVFIG 343

Query: 296  -MLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENN 354
             M+ ++  L       D+ D  +N+ + L G ++ + L+  +  + R+ K+ I+ ++   
Sbjct: 344  QMISRIIELQLGYRGPDDKDHYRNKRLKLAGDMLAVLLRAAMMGFAREIKEGIEKQLAKT 403

Query: 355  GKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNF 414
             KK D          M   PS  I   I+  + TG            R G +   +R N 
Sbjct: 404  -KKIDL--------KMVFKPSI-ITDRIQHAMATGNWPGG-------RTGVSQLLDRTNM 446

Query: 415  LRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVAS 474
            L  +S  R V    +  G      R+L    WG +CP  TP+G   GL+ ++     V+ 
Sbjct: 447  LSTLSHLRRVVSPLA-RGQPHFEARELHGTQWGRMCPFETPEGANIGLVKNLALMTNVSV 505

Query: 475  YYDSRGNIRDFSKMRTSILRVLIGVGMIP-----SLPKLVKSGPPAVLS----------- 518
              D +            I  +L  VG++P     ++   +  G   ++S           
Sbjct: 506  GIDDK-----------EIEALLYRVGVVPIVSTRTIDGKIHKGLIDMISEDVSKATEISE 554

Query: 519  -------VLLDGRVVGV-IPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAY- 569
                   V L+G+++G      E+ + +  LRR     +  I  ++ V Y+    G  Y 
Sbjct: 555  KYSGWCKVFLNGKLIGYHKDGEELARTIRSLRR-----SGKISSEVNVAYI----GNKYI 605

Query: 570  --------------PGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPD 615
                          P + +    PK  R   ++ L SE     E +   +Q  +E   PD
Sbjct: 606  KEVVVNTDSGRIRRPLIVIENGVPKLTR--EHVKLLSEGKLTFEDL--VKQGIIEYLDPD 661

Query: 616  GGDGGRRNAFPA------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGF 669
              +       P+      TH EI    +L + A++ PY +HNQSPRNMYQ  MAKQ++G 
Sbjct: 662  EEENAYIALQPSDVTAEHTHLEIWIPAILGITASIIPYPEHNQSPRNMYQSAMAKQSLGL 721

Query: 670  SVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMI 729
                 + R D + + L  PQ P+V T      G +E P G N +VAVL YTGY+MEDA+I
Sbjct: 722  YAANFQRRMDTRGHFLHYPQRPLVETRMMNVIGYNERPAGQNMVVAVLTYTGYNMEDALI 781

Query: 730  LNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVD------------RGQKLFRR-NKDAKSL 775
            +N+SSV+RG+     ++   T++    G   D            RGQK + +  +D    
Sbjct: 782  MNRSSVERGLARSTFFRLYTTVEYKYPGGIQDEITIPSTNVRGYRGQKAYEKLEEDGIVA 841

Query: 776  HSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNS--RKGSESVFVDYVAVDMKNSKN 833
                 S G   +G++  P       Y+    + +  S   +  E   VD V + M +  N
Sbjct: 842  PETQVSGGDVLIGKVSPPRFLSAQEYEVGGLTRQDTSIVMRHEEKGIVDTVLITMDSEGN 901

Query: 834  LPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFP 893
              +   +R R  R P +GDKF+SRHGQKGV   L P  DMPF+   G+ PDLIINPHAFP
Sbjct: 902  --KLIKVRVRDLRIPELGDKFASRHGQKGVLGLLLPQYDMPFTE-EGVTPDLIINPHAFP 958

Query: 894  SRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCG 953
            SRMT+A L+ES+A K  +L G+ +D TPF                K+ +++L  +LR  G
Sbjct: 959  SRMTVAQLMESIAGKAAALEGRIIDGTPFY---------------KTPIEDLQIILRRHG 1003

Query: 954  FNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRK 1013
            + Y G E +Y G  G  +   +FIG VYYQ+L HM SDK   R+ G +  +TRQP +GR 
Sbjct: 1004 YPYTGEEAMYDGRTGELIKTPVFIGIVYYQKLHHMASDKIHARARGPVQILTRQPTEGRS 1063

Query: 1014 RGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIR 1073
            R GG+R+GEME D L+ HG+A LL + +   SD  +  VC LCGS+              
Sbjct: 1064 RAGGLRWGEMEVDCLIGHGSALLLKEAITDRSDSTIIYVCELCGSMGWYD---------- 1113

Query: 1074 EIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
                    R   K  C   +    ++ V + Y F+ L  EL +M I+  L + D
Sbjct: 1114 --------RNKGKFVCPIHKEKGVLKPVEVSYAFKLLLQELMSMGIRPRLLIED 1159


>gi|161527855|ref|YP_001581681.1| DNA-directed RNA polymerase subunit B [Nitrosopumilus maritimus SCM1]
 gi|160339156|gb|ABX12243.1| RNA polymerase Rpb2 domain 6 [Nitrosopumilus maritimus SCM1]
          Length = 1115

 Score =  364 bits (934), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 335/1194 (28%), Positives = 512/1194 (42%), Gaps = 198/1194 (16%)

Query: 15   LVRHHIESFDYMLDEGLSEMFDHCRQAKI--------------------------SYTGK 48
            + R H+ SFD  L+ GL  + +   Q  I                          S T  
Sbjct: 21   IARQHLNSFDEFLERGLQSIINEVGQIDIENAEYPYKIQLGKVKLQQPRMMELDGSITHI 80

Query: 49   LMADVEFQYLDAGSPVVRE------------RF-NFGQFPVMLKTRRCHLQGADSQKLVS 95
              A+   + +   +PV+ E            RF + G  PVM K+  C L    +QKLV 
Sbjct: 81   TPAEARLRNVSYSAPVMMEASVVEDGKILESRFVHIGDVPVMAKSNACILHNFSTQKLVE 140

Query: 96   LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
              E+  + GGYFI+NG ERV   V L   +Y   +V       RE      V    V   
Sbjct: 141  HGEDPNDPGGYFIINGSERVI--VGLEDLSYNKIIVD------RETVGGNIVHKAKVYSS 192

Query: 156  QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
                  KL  ++     +   + G    +PV  +++AL   +D EI              
Sbjct: 193  IVGYRAKLELVMKNDGLIVARIPGSPVDIPVVTLMRALGLESDREI-------------- 238

Query: 216  EKGAVGSPLVSERVKIILAEVQDLS-LTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETV 274
               A    LV E    + A  +    + T    + +I +   P   G+  E     AET+
Sbjct: 239  ---AAAVSLVDELQDELEASFEKAGDVPTAKDAIVYISKRIAP---GMLEEFQIKRAETL 292

Query: 275  IRDYIFVHL----NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITI 330
            +   +  HL     +  +K   L     KL  L       D+ D   N+ I   G ++  
Sbjct: 293  LDWGLLPHLGKHPENRKEKAQFLGEAACKLLELKLDWIRPDDKDHYGNKVIKFAGQMLAD 352

Query: 331  YLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGR 390
              +    + +R  K     ++E +G+K                    +  +I   + T +
Sbjct: 353  LFRTAFRNLVRDMKY----QLERSGQKRGI---------------NAVAAAIRPGIITDK 393

Query: 391  L--ATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT---SVRKLLPES 445
            L  A  TG   + R G T   +R N+L  IS  R +    S    RT      R L    
Sbjct: 394  LNNAIATGNWGRGRVGVTQLLDRTNYLSTISHLRRIQSPLS----RTQPNFEARDLHATH 449

Query: 446  WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
            +G +CP  TP+G  CGL+ ++  +  ++    S   +     + T        V    + 
Sbjct: 450  FGRICPSETPEGSNCGLVKNLALSGIISVNVPSEEIVEKLYDLGT--------VHFFDAK 501

Query: 506  PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
              L K G      + +DGR++G     E  ++   LR L+ +  S I   + V +    +
Sbjct: 502  EDLKKDG----TRIFVDGRLIGYYKDGE--QLAESLRDLRRN--SKIHPHVGVSFHKSEI 553

Query: 566  GGAYPGLYLFTSPPKFVRPV---------------RNISLPSEESQNIELIGPFEQVFM- 609
             G+   LY+  +  + +RP+                 IS       ++  +G  E +   
Sbjct: 554  EGSTRRLYVNCNAGRVLRPLIIIKDNKPLLTADLLDKISKKLISWTDLLRMGVLEMIDAN 613

Query: 610  -EIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMG 668
             E  C    D   ++    TH E+ P  +L   A++ PY +HNQSPRN Y+  MAKQ++G
Sbjct: 614  EEENCYVTLD--EKDTKKHTHLEVFPPAILGAGASIIPYPEHNQSPRNTYESAMAKQSLG 671

Query: 669  FSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAM 728
            FS   +      + + +  PQ PIV T      G+++ P G N +VAVL + GY++EDA+
Sbjct: 672  FSTPMMNTSTYVRQHFMLYPQVPIVNTKAMKLLGLEDRPAGQNCVVAVLPFDGYNIEDAI 731

Query: 729  ILNKSSVDRGMCHG---QIYQTET------------IDLSDD---GNKVDRGQKLFRRNK 770
            +L+K+SVDRG+      +IY  E             I  ++D   G K +R  +L   + 
Sbjct: 732  VLSKASVDRGLGRTFFFRIYDAEAKQYPGGMRDAFEIPNAEDNIRGYKGERAYRLLEEDG 791

Query: 771  DAKSLHSVIDSDGLPYVGQMIHPG--EPYCSIYDKTTNSWRTNSRKG---SESVFVDYVA 825
               +   V   D L  +G+   P   E Y     +++  +R ++  G   SE+  VD V 
Sbjct: 792  VVATEAPVKGGDIL--IGKTSPPRFMEEYREF--ESSGPYRRDTSIGVRPSETGVVDTVV 847

Query: 826  VDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDL 885
            +   N      K  IR R  R P IGDKF+SRHGQKGV   L    D+P++  +GM PD+
Sbjct: 848  MTQSNEGGKMYK--IRARDMRIPEIGDKFASRHGQKGVLGILAKAEDLPYTA-SGMSPDV 904

Query: 886  IINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDEL 945
            +INPHAFPSRMT+ M++ES+  K  +L GK  D + F                   +DE+
Sbjct: 905  LINPHAFPSRMTVGMMMESICGKSAALRGKRFDGSAFVGEK---------------MDEV 949

Query: 946  GEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQIT 1005
             E++   GF Y G E++Y G  G     E+FIG VYYQ+L HMV+DK   R+ G +  +T
Sbjct: 950  REVMDAHGFEYSGKEIMYDGRTGKSFPVEVFIGVVYYQKLHHMVADKIHARARGQVQMLT 1009

Query: 1006 RQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFI 1065
            +QP +GR RGGG+RFGEMERD L+A+GA+ +L DRL   SD     VC  CG V      
Sbjct: 1010 KQPTEGRARGGGLRFGEMERDCLIAYGASMILKDRLLDESDKSDIFVCERCGLVA----Y 1065

Query: 1066 HPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
            H  K+              +K  C  C     + +V++ Y F+ L  E+ ++N+
Sbjct: 1066 HDVKQ--------------RKYVCRVCGDKAKVSSVSVAYAFKLLLQEMQSLNV 1105


>gi|167519879|ref|XP_001744279.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163777365|gb|EDQ90982.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1166

 Score =  363 bits (933), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 296/1106 (26%), Positives = 490/1106 (44%), Gaps = 143/1106 (12%)

Query: 71   FGQFPVMLKTRRCHLQGADS-QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMS 129
             G+ P+ML+++ C L   ++ +    + E   + GGYFI+NG E+V   +I  ++    +
Sbjct: 136  LGKVPMMLRSKYCTLNKMETFRDFYDINECPLDPGGYFIINGSEKV---LIAQEKMAGNT 192

Query: 130  MVRSSFRDRREGY-TDKAVVIRCVRKDQSSVTLKLYYLLNGSVR----LGFWLQGK-EYL 183
            +     +D +  + T+   ++    +  S++ +K+    +G  +     G  +     Y+
Sbjct: 193  VYVFEKKDSKHMFVTEMRSIVEDSNRPTSTMMVKMLRGGSGGTKGRATFGRVIHASLPYI 252

Query: 184  ---LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLS 240
               +PV ++ +AL   +D  I  H+   +D+             + E +K  L E     
Sbjct: 253  RQDIPVVVLFRALGFEDDRSILEHIIYDFDDME-----------MMELLKPSLDEA--FV 299

Query: 241  LTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHL----NDNNDKFNLLIFM 296
            + TR   L  IG      + G+  +     A  +++  +  H+         K   L +M
Sbjct: 300  VQTREVALDLIGRRSMAAV-GMSKDMRVRFARDILQKEMLPHIGVGPQCEQAKAFFLGYM 358

Query: 297  LQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGK 356
            + +           D+ D   N+ + L G L+    +   +   +K  + + D + N   
Sbjct: 359  VHRTLQAALRRRELDDRDHYGNKRLDLAGSLVAYLFRTLFKQLTKKLTRKVTDLV-NRNH 417

Query: 357  KFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLR 416
            KF    L +++          +G+ +   L TG    Q     + RAG +    RL F  
Sbjct: 418  KFMVITLLDVEI---------LGSGLRYSLATGNWGDQKKAH-EARAGVSQVLNRLTFAS 467

Query: 417  FISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYY 476
             +S  R ++      G +    R+L    WG++CP  TP+G   GL+ +++    +    
Sbjct: 468  TLSHLRRLNSPIDRTG-KIAKPRQLHNTHWGYICPAETPEGHAVGLVKNLSLMASLTVGS 526

Query: 477  DSRGNIRDFSKMRTSILRVLIGVGMIPSLPKL-VKSGPPAVLSVLLDGRVVGVIPSSEIE 535
            D             + +  L+G   +  L +L  +S       V ++G  VG+   S  +
Sbjct: 527  DD------------TPVHDLLGASGLDYLDRLPSRSAIKTATKVFVNGNWVGI--HSHPD 572

Query: 536  KVVAHLRRLKVSAASVIPDDL---------EVGYVPLSLGGAYPGLYL---------FTS 577
            ++V  +R+  + AA  +  ++         EV  V  S     P L +         F  
Sbjct: 573  ELVTTMRQYLLDAAHSVASEVSIFRNIREREVHIVTDSGRTTRPLLIVNKDDANRCRFAL 632

Query: 578  PPKFVRPVRNISLPSE---ESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHP 634
                V  +RN  +      +   +E I   E+    I    G           TH EIHP
Sbjct: 633  KNSHVMALRNDQMSWTHLVQRGVVEYIDVNEEETTMIAMDQGTLEETSYCNTYTHCEIHP 692

Query: 635  TGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVR 694
            + +LS+ A++ P+ DHNQSPRN YQ  M KQ MG  +     R D   + L  PQ P+V+
Sbjct: 693  SMILSICASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQRPLVQ 752

Query: 695  TNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD 754
            T +       E P G NAIV ++ YTGY+ ED++I+N+ SV+RG+     Y++       
Sbjct: 753  TRSMNYLRFAELPAGINAIVGIMTYTGYNQEDSVIMNRYSVERGLFRSVFYRSYAASEHS 812

Query: 755  DGNKVDRGQKLFRRNKDA--KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIY 801
            +  ++ +  K  R N     ++ +  ++ DG+             VG+++   E      
Sbjct: 813  ERGEIIKIDKPSRENCIGMRRANYDKLEDDGIVAPGIRVSGDDAIVGRLLELPEA----- 867

Query: 802  DKTTNSWRTNSR------KGSESVFVD--YVAVDMKNSKNLPQKANIRFRHTRNPIIGDK 853
             +  +  R   R      + SES  +D   ++V+ K  K +     IR R  R P IGDK
Sbjct: 868  TRQASGGRFEKRDKSLFLRSSESGIIDGVMISVNQKGEKFV----KIRVRSVRTPQIGDK 923

Query: 854  FSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLH 913
            F+SRHGQKG C   +   DMPF+  +G+ PD+I+NPHA PSRMTI  L+E +  K  S  
Sbjct: 924  FASRHGQKGTCGMQYAQEDMPFAA-SGVVPDIIVNPHAIPSRMTIGHLIECLLGKSASHS 982

Query: 914  GKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTC 973
            G   DATPF               +K  V ++ ++L    F  +G EV+Y+G  G ++  
Sbjct: 983  GTIGDATPF---------------TKVNVTDVADILEGYNFQRYGNEVMYNGFTGRKMQA 1027

Query: 974  EIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGA 1033
            ++F+GP YYQRL+HMV DK   R+ G +  +TRQP++GR R GG+RFGEMERD ++AHGA
Sbjct: 1028 QVFLGPTYYQRLKHMVDDKIHARARGPLQNLTRQPMEGRSRDGGLRFGEMERDCMIAHGA 1087

Query: 1034 AYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQ 1093
            A  L +RL   SD +   VC +CG    A                       +  C  C+
Sbjct: 1088 AQFLRERLFEVSDPYSLHVCDVCGLPCVAKL------------------EKNEFECTRCR 1129

Query: 1094 TSKGMETVAMPYVFRYLAAELAAMNI 1119
             S  +  + +PY  + L  EL  M++
Sbjct: 1130 NSTRVSRIRLPYACKLLFQELMTMSV 1155


>gi|401018|sp|P31814.1|RPOB_THECE RecName: Full=DNA-directed RNA polymerase subunit B
 gi|48140|emb|CAA47722.1| Subunit B of DNA-dependent RNA polymerase [Thermococcus celer]
          Length = 1122

 Score =  363 bits (932), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 328/1211 (27%), Positives = 521/1211 (43%), Gaps = 217/1211 (17%)

Query: 15   LVRHHIESFDYMLDEGLSEMFDHCRQAK-------ISYTGKLMADVEFQY---------- 57
            LVR H++S++  +D G+ E+ D     K       + +    + + EFQ           
Sbjct: 29   LVRQHLDSYNAFIDHGMQEVIDEFGGVKPDIPDFEVKFGKVRLGEPEFQEAQGQRKPLYP 88

Query: 58   LDA-------GSPVVRE-------------RFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            +DA        +P+  E                 G+ P+MLK++ C L G   ++L+ L 
Sbjct: 89   MDARIRNLTYSAPIYLELIPVVNGVSQEAVEVRIGELPIMLKSKACRLYGLSDEELIKLG 148

Query: 98   EEAAEMGGYFILNGLERVFRSV-------ILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            E+  + GGYFI+NG ERV  S+        L +++   + + +     R GY  +A++  
Sbjct: 149  EDPKDPGGYFIVNGSERVIVSIEDLAPNKTLVERDERQNRIIAKCFSYRHGY--RALITV 206

Query: 151  CVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIV--LKALVDTNDLEIFNHLTCC 208
              RKD       LY  L    R            PV  V  ++AL   +D EI   ++  
Sbjct: 207  ERRKDGI-----LYVKLPNVPR------------PVKFVYVMRALGLLSDREIVEAVS-- 247

Query: 209  YDEKYKKEKGAVGSPLVSERVKIILAEVQDLS-LTTRLQCLQHIGEHFQPVIDGLQSESY 267
                          P +     ++   ++D S +TT+ + L +IG+   P   G   E  
Sbjct: 248  ------------DDPRIQH---VLFDNLEDASDVTTQEEALDYIGKLSLP---GQPKEYR 289

Query: 268  YAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILL 323
               A+ +I + +  H+     D   K   L  M  ++  L       D+ D   N+ + L
Sbjct: 290  LRRAQNIIDNNLLPHMGVEEKDRKAKAYYLGMMALRVLELSLGLRGEDDKDHYANKRLKL 349

Query: 324  PGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIE 383
             G L+    +      ++  +  +    +  G+++ F N+     V        +   IE
Sbjct: 350  AGDLLMDLFRVAFGQLVKDMQYQMTKTYQRKGERYTFENIQRF--VRNSIRPDVLSERIE 407

Query: 384  TMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLP 443
              L TG            R G +   +R N++  +S  R V    S       + R L  
Sbjct: 408  HALATGSWPGG-------RTGVSQLLDRTNYISTLSHLRRVTSPLSREQPHFEA-RDLHG 459

Query: 444  ESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP 503
              WG +CP  TP+G  CGL+ ++    ++ +       +R++          L  +G++P
Sbjct: 460  THWGRICPTETPEGPNCGLVKNLALMSQITTGVPEE-EVREY----------LERLGVVP 508

Query: 504  SLPKLVKSGP-PAVLSVLLDGRVVGVIPSSE--IEKVVAHLRRLKVS----AASVIPDDL 556
                + +  P P +  + L+G +VG +   E  + ++    R  K+S     A    +D+
Sbjct: 509  ----IEERRPNPDLWRLYLNGVLVGTVEDGEGFVNRIRTDRRSGKISDIINVALYQDEDV 564

Query: 557  EVGYVPLSLGGAY-PGLYLFTSPPKFVRP-VRNISLPSEESQNIELIGPFEQVFMEIRCP 614
            +  YV    G    P + +    PK  R  V  I   S    ++  +G  E +  E    
Sbjct: 565  KEIYVNSDDGRVRRPLIIVENGRPKLTREHVEAIKNGSLTWSDLVKMGVIEYLDAE---- 620

Query: 615  DGGDGGRRNAFPAT----------HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAK 664
                    NA  AT          H E+ P  +L + A+L PY +HN  PRN Y   MAK
Sbjct: 621  -----EEENALVATWPWEVTEEHTHLELMPAAILGIPASLVPYPEHNARPRNTYGAGMAK 675

Query: 665  QTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDM 724
            Q++G      + R D + + +  PQ P+V +      G +E P G N +VAVL+Y GY+M
Sbjct: 676  QSLGLGWANFRIRVDTRGHLMHYPQVPLVNSRIMKAVGFEERPAGQNFVVAVLSYAGYNM 735

Query: 725  EDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVDR------------GQKLFRRNKD 771
            EDA+I+NK+S++RG+     ++T E  +    G + DR            G++ +R    
Sbjct: 736  EDAIIMNKASIERGLARSTFFRTYEAEEKRYLGGQTDRFEIPDPTIQGYLGERYYRH--- 792

Query: 772  AKSLHSVIDSDGLPY-----------VGQMIHPG--EPYCSIYDKTTNSWRTNSR--KGS 816
                   +D DG+ +           VG+   P   E    +        R  S   + S
Sbjct: 793  -------LDEDGIIFPESKVNGKDVLVGRTSPPRFLEEQSGLGGIILQERRETSLTVRPS 845

Query: 817  ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS 876
            E+  VD V +    + +  +   +  R  R P  GDKF+SRHGQKGV   + P  DMP++
Sbjct: 846  ETGVVDKVII--TETGDGTKLVKVTTRDLRIPEFGDKFASRHGQKGVIGLIVPQEDMPWT 903

Query: 877  GVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTD 936
              +G+ PDLI+NPH  PSRMT+  L+E++  K  SL G+ +D T F    ++        
Sbjct: 904  E-SGIVPDLIVNPHGIPSRMTVGQLIEAIGGKVASLKGRRVDGTAFIGEPEEKLRKELE- 961

Query: 937  ESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVR 996
                            GF + G EV+Y G+ G  L  ++F+G +YYQRL HMV+DK   R
Sbjct: 962  --------------ELGFKHSGREVMYDGITGRRLEADVFVGVIYYQRLHHMVADKMHAR 1007

Query: 997  STGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLC 1056
            S G +  +T+QP +GR R GG+RFGEMERD L+ HGAA LL +RL   SD     VC  C
Sbjct: 1008 SRGPVQVLTKQPTEGRAREGGLRFGEMERDVLIGHGAAMLLIERLLEESDKTEVWVCENC 1067

Query: 1057 GSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAA 1116
            G +     +  ++R               KV C  C   + +  V M Y F+ L  EL A
Sbjct: 1068 GHIA----LEDKRRG--------------KVYCPVCGEEERISKVEMSYAFKLLLDELKA 1109

Query: 1117 MNIKITLQLGD 1127
            M I+ +L+L D
Sbjct: 1110 MGIRPSLKLVD 1120


>gi|218884686|ref|YP_002429068.1| DNA-directed RNA polymerase subunit B [Desulfurococcus kamchatkensis
            1221n]
 gi|218766302|gb|ACL11701.1| DNA-directed RNA polymerase, subunit B [Desulfurococcus kamchatkensis
            1221n]
          Length = 1149

 Score =  363 bits (931), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 329/1183 (27%), Positives = 515/1183 (43%), Gaps = 160/1183 (13%)

Query: 17   RHHIESFDYMLDEGLSEMFD--HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQF 74
            ++ I+S  +   EG+ E      CR   ++Y   +   V  +  D       +       
Sbjct: 48   KYRIDSPKWTSVEGIEESKTPMECRLRNLTYATPIYVSVRIE--DESGYTREQELKLMDL 105

Query: 75   PVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSS 134
            PVMLK+    L     Q+L+   E+  + GGYFI+NG E+V    I+ +++   + +   
Sbjct: 106  PVMLKSSIDPLSKLTPQELIENGEDPRDPGGYFIINGSEKV----IVAQEDLASNNIIVD 161

Query: 135  FRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALV 194
                    T  A V    R  +S + ++     +G     F  QG ++  P  I++ AL 
Sbjct: 162  VMQEGSSVTHVAKVTSVSRGRRSQLIIERRK--DGVFYASF--QGHKF--PALILMIALG 215

Query: 195  DTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKII----------LAEVQDLSLTTR 244
              ++ E+       Y    K E      P + +  +I+            EV+ L    R
Sbjct: 216  LASEAEML------YSTSLKPEIQTYLLPSILQVQEILPKLEIPEGASEEEVRRLKEEYR 269

Query: 245  LQCLQH----IGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNND---KFNLLIF-- 295
             + ++     I   F   I G   E     AE ++ + +  H+  ++    +    +F  
Sbjct: 270  RKVIEEALDFIASKF---IIGRPREERILRAERLLDERLLPHIGIDSSPETRLKKAVFIG 326

Query: 296  -MLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENN 354
             M+ ++  L       D+ D  +N+ + L G ++ + L+  +  + R+ K+ I+ ++   
Sbjct: 327  QMISRIIELQLGYREPDDKDHYRNKRLKLAGDMLAVLLRAAMMGFAREIKEGIEKQLAKT 386

Query: 355  GKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNF 414
             KK D          M   PS  I   I+  + TG            R G +   +R N 
Sbjct: 387  -KKIDL--------KMVFKPSI-ITDRIQHAMATGNWPGG-------RTGVSQLLDRTNM 429

Query: 415  LRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVAS 474
            L  +S  R V    +  G      R+L    WG +CP  TP+G   GL+ ++     V+ 
Sbjct: 430  LSTLSHLRRVVSPLA-RGQPHFEARELHGTQWGRMCPFETPEGANIGLVKNLALMTNVSV 488

Query: 475  YYDSRG------NIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGP------PAVLSVLLD 522
              D +        I     + T  +   I  G+I  + + V               V L+
Sbjct: 489  GIDDKEIEALLYRIGVVPIVSTRTIDGKIHKGLIDMISEDVSKASEISEKYSGWCKVFLN 548

Query: 523  GRVVGV-IPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAY------------ 569
            G+++G      E+ + +  LRR     +  I  ++ V Y+    G  Y            
Sbjct: 549  GKLIGYHKDGEELARTIRSLRR-----SGKISSEVNVAYI----GNKYIKEVVVNTDSGR 599

Query: 570  ---PGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFP 626
               P + +    PK  R   ++ L SE     E +   +Q  +E   PD  +       P
Sbjct: 600  IRRPLIVIENGVPKLTR--EHVKLLSEGKLTFEDL--VKQGIVEYLDPDEEENAYIALQP 655

Query: 627  A------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQ 680
            +      TH EI    +L + A++ PY +HNQSPRNMYQ  MAKQ++G      + R D 
Sbjct: 656  SDVTAEHTHLEIWIPAILGITASIIPYPEHNQSPRNMYQSAMAKQSLGLYAANFQRRMDT 715

Query: 681  KLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMC 740
            + + L  PQ P+V T      G +E P G N +VAVL YTGY+MEDA+I+N+SSV+RG+ 
Sbjct: 716  RGHFLHYPQRPLVETRMMNVIGYNERPAGQNMVVAVLTYTGYNMEDALIMNRSSVERGLA 775

Query: 741  HGQIYQT-ETIDLSDDGNKVD------------RGQKLFRR-NKDAKSLHSVIDSDGLPY 786
                ++   T++    G   D            RGQK + +  +D         S G   
Sbjct: 776  RSTFFRLYTTVEYKYPGGIQDEITIPSTNVRGYRGQKAYEKLEEDGIVAPETQVSGGDVL 835

Query: 787  VGQMIHPGEPYCSIYDKTTNSWRTNS--RKGSESVFVDYVAVDMKNSKNLPQKANIRFRH 844
            +G++  P       Y+    + +  S   +  E   VD V + M +  N  +   +R R 
Sbjct: 836  IGKVSPPRFLSTQEYEVGGLTRQDTSIVMRHEEKGIVDTVLITMDSEGN--KLIKVRVRD 893

Query: 845  TRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLES 904
             R P +GDKF+SRHGQKGV   L P  DMPF+   G+ PDLIINPHAFPSRMT+A L+ES
Sbjct: 894  LRIPELGDKFASRHGQKGVLGLLLPQYDMPFTE-EGVTPDLIINPHAFPSRMTVAQLMES 952

Query: 905  VAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYS 964
            +A K  +L G+ +D TPF                K+ +++L  +LR  G+ Y G E +Y 
Sbjct: 953  IAGKAAALEGRIIDGTPFY---------------KTPIEDLQIILRRHGYPYTGEEAMYD 997

Query: 965  GVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEME 1024
            G  G  +   +FIG VYYQ+L HM SDK   R+ G +  +TRQP +GR R GG+R+GEME
Sbjct: 998  GRTGELIKTPVFIGIVYYQKLHHMASDKIHARARGPVQILTRQPTEGRSRAGGLRWGEME 1057

Query: 1025 RDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP 1084
             D L+ HG+A LL + +   SD  +  VC LCGS+                      R  
Sbjct: 1058 VDCLIGHGSALLLKEAMTDRSDSTIIYVCELCGSMGWYD------------------RNK 1099

Query: 1085 KKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
             K  C   +    ++ V + Y F+ L  EL +M I+  L + D
Sbjct: 1100 GKFVCPIHKEKGVLKPVEVSYAFKLLLQELMSMGIRPRLLIED 1142


>gi|403336158|gb|EJY67267.1| DNA-directed RNA polymerase [Oxytricha trifallax]
          Length = 1239

 Score =  362 bits (930), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 310/1128 (27%), Positives = 500/1128 (44%), Gaps = 155/1128 (13%)

Query: 68   RFNFGQFPVMLKTRRCHLQGADS-QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNY 126
            R   G+ PVML+++ C L   +  Q++   K+   + GGYFI+NG E+V    I+ ++  
Sbjct: 193  RVTIGKIPVMLRSKFCQLHSLNQMQRMKEGKDCQYDQGGYFIINGSEKV----IVAQERM 248

Query: 127  PMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRL---GFW------- 176
              + V + F  +          IR   ++ +    +L   L    +    GF        
Sbjct: 249  ANNQV-NVFHKKPPSKYSWVAEIRSQAENSNKPPQQLLLFLKSRYKSSGPGFGQANHSTS 307

Query: 177  ---------LQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSE 227
                     L   +  +P+ I+ +AL   +D +I + +  C+D            P + E
Sbjct: 308  KFGQSIYVSLPMIKEQIPLVILFRALGTISDRQILSRV--CFD--------CPDDPEMGE 357

Query: 228  RVKIILAEVQDLSLTTRLQCLQHIGEH--FQPVIDGLQSESYYAVAETVIRDYIFVHLND 285
             ++  L E +   + T+   + +I +    QP I   +      + E+    +I     D
Sbjct: 358  ALRASLEESK--IVDTQEDAMDYIAKRGSAQPYIRENRLTYTKLMLESEFLPHISTLPQD 415

Query: 286  NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKK 345
               K   L +M+ KL          D+ D    + + + G L+    ++   ++    ++
Sbjct: 416  MPKKSFFLGYMVNKLLKAFLGRIDEDDRDYYGKKRLDMAGSLLATNFRQLFRNFTDTMRR 475

Query: 346  LIQDEIENNGKKFDFFNLANIKKVMEKNPSKQ--IGTSIETMLKTGRLATQTGLDLQQRA 403
            +++ EI++ GK+          +++ +N  KQ  I   + T L TG        D+Q + 
Sbjct: 476  ILKHEIDS-GKE----------QIVLQNSIKQDIITRGLRTALATGNWGRDKNGDVQ-KT 523

Query: 404  GYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLL 463
            G      RL F   +S  R ++   +  G +    R+L    WG +CP  TP+G  CGL+
Sbjct: 524  GVAQVLNRLTFASSLSHLRRLNTPIAKTG-KLAKPRQLHNTHWGMICPAETPEGAACGLV 582

Query: 464  NHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDG 523
             ++     V+                + ++ +L  +G +  L  + + G    + + ++G
Sbjct: 583  KNLALMTFVS-----------VGSQPSYLISILEDLG-VDRLDDMNQVGSGRQVRIFVNG 630

Query: 524  RVVGV--IPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKF 581
               G    P   I+ ++   R  ++     I  DL+   +            LF      
Sbjct: 631  NWFGTHANPDDLIKSMLKLRRTHQIPKEIAIVRDLQNKEIRFYTDSGRVQRPLFIVQNNN 690

Query: 582  VR-PVRNISLPSEESQN---------IELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATH 629
            ++   ++ISL  +   N         +E +   E+    + +   D            TH
Sbjct: 691  IKLKKKHISLLEKNEYNFDDTIKEGLVEFLDVEEEETAMIAMHLQDLKSKKENRVTTYTH 750

Query: 630  EEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQ 689
             EIHP+ +L V A++ P+ DHNQSPRN YQ  M KQ MG        R D   + L  PQ
Sbjct: 751  CEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYTSNHSIRMDTLAHVLYYPQ 810

Query: 690  TPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTET 749
             P+V T +       E P G+NAIVA+  YTGY+ ED++I N+SS+DRG+     ++T  
Sbjct: 811  KPLVCTKSMDFLHFKELPAGSNAIVAIACYTGYNQEDSIIFNQSSIDRGIFRSAFFRT-- 868

Query: 750  IDLSDDGNKVDRGQ-KLFRRNKDAK-SLHSVIDSDGLPYVGQMIHPGEPYCS---IYDKT 804
               S+   K +R +   F++    K   +  +D DGL      I+PG        I  KT
Sbjct: 869  --YSETQEKDERFEIPDFKKCSGRKHGTYDKLDIDGL------INPGNQVSGDDVIIGKT 920

Query: 805  TN-------SWRTNSRKGSESVF-------------------VDYVAVDMKNSKNLPQKA 838
            T        +   NS +G++ +F                   +D V + +       +  
Sbjct: 921  TAIKMNENMNGNANSSQGADPMFFVKSRRDVSTCLKHSETGKIDQVVLTVNEQGE--RFV 978

Query: 839  NIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTI 898
             I+ R  R P IGDKF+SRHGQKG     +   DMPF+   G+ PDLIINPHA PSRMTI
Sbjct: 979  KIKMRSERIPQIGDKFASRHGQKGTVGMTYRQEDMPFTR-EGIVPDLIINPHAIPSRMTI 1037

Query: 899  AMLLESVAAKGGSLHGKFMDATPFAN-SVKKTNGDTGTDESKSLVDELGEMLRTCGFNYH 957
              L+E + +K  SL G   DATPF    VK T            V+++ + L  CG+   
Sbjct: 1038 GHLIECLGSKVASLTGTEGDATPFQKVGVKDT------------VEQISKRLHECGYQLR 1085

Query: 958  GVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGG 1017
            G EV+Y+G  G ++   IF+GP YYQRL+HMV+DK   R  G    +TRQP +GR R GG
Sbjct: 1086 GNEVMYNGFNGKKMEVMIFLGPTYYQRLKHMVADKIHSRGRGPTQILTRQPTEGRSRDGG 1145

Query: 1018 IRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGG 1077
            +RFGEMERD +++HGAA  L +RL   SD++   +C +CG +               +G 
Sbjct: 1146 LRFGEMERDCMISHGAARFLKERLFDVSDFYRIHMCEVCGLIC--------------VGN 1191

Query: 1078 LPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
            L    + ++  C+ CQ +  +  V +PY  + L  EL AM I   L++
Sbjct: 1192 L----SEQRFECYNCQNTSKICQVNIPYACKLLMQELMAMQIAPRLKV 1235


>gi|281207896|gb|EFA82075.1| RNA polymerase III [Polysphondylium pallidum PN500]
          Length = 1139

 Score =  362 bits (929), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 323/1172 (27%), Positives = 510/1172 (43%), Gaps = 206/1172 (17%)

Query: 29   EGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGA 88
            E +S     CR   ++Y+  +  ++E  Y+     V R+    G+ P+ML++  C L   
Sbjct: 102  ESVSMTPQKCRLRDMTYSAPITVNLE--YVRGKQIVGRKNVVIGRIPIMLRSSNCVLTNK 159

Query: 89   DSQKLVSLKEEAAEMGGYFILNGLERVF---------RSVI-LPKQNYPMSMVRSSFRDR 138
              ++L +L E   + GGYFI+ G E+V          R +I    +  P S V SS  +R
Sbjct: 160  SHEQLANLGECPLDPGGYFIVRGNEKVILNHEQLSKNRIIIETDAKGVPCSTVTSSTHER 219

Query: 139  REGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--------LPVGIVL 190
                           K ++S+ +K                GK YL        +PV I L
Sbjct: 220  ---------------KSRTSIIMK---------------HGKLYLKHNTFAEDIPVVIFL 249

Query: 191  KALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSP-LVSERVKIILAEVQDLSLTTRLQCLQ 249
            K +    D E+                  VGS  +  + +   L E     + T+ Q L 
Sbjct: 250  KGMGVETDQEVVQ---------------LVGSEEIFLDAIASSLEECNKCKVHTQTQALD 294

Query: 250  HIGEHFQPVID--GLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLI----FMLQKLFSL 303
            ++G   + +    G+  +S    A+ ++   +  H+      F L +     M++++   
Sbjct: 295  YLGARIKSIRKPWGMSKKSKSEEAKDILAGVVLNHVPVRRYNFRLKVIYVALMIRRIIIA 354

Query: 304  VDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEI--ENNGKKFDFF 361
                S  D+ D   N+ + L G LI++  ++  + +L + KK     I   N    FDF 
Sbjct: 355  TKDRSTLDDKDYYGNKRLELSGQLISLLFEDLFKKFLAELKKATDQAILKPNRAMVFDFA 414

Query: 362  NLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFF 421
            ++  I+     N      +S +  LK  ++         +R+G T    RL+F+  +   
Sbjct: 415  SI--IRTETLTNGFVHAISSGQWNLKRFKM---------ERSGVTQVLSRLSFISALGMM 463

Query: 422  RAVHRGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRG 480
              +   + F   R  S  R L P  WG LC    P   P G               ++ G
Sbjct: 464  TRIQ--SQFEKTRKISGPRSLQPSQWGMLC----PSDTPEG---------------EACG 502

Query: 481  NIRDFSKM--------RTSILRVLIGVGMIPSLPKLVKS---GPPAVLSVLLDGRVVGVI 529
             +++F++M           +LR+   +G+   L  L+            V L+G+++G+ 
Sbjct: 503  LVKNFAQMTHVTTDEPEGPLLRLAYNLGVQDIL--LITGEELNSRTAFLVFLNGQIIGIH 560

Query: 530  PSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNIS 589
             S  +   V  LR+++   A  I +     ++ +    A+  + +     +  RP+  + 
Sbjct: 561  NSPTL--FVNTLRKMR--RAGRIRE-----FISICKNEAHKTVSIACDGGRLCRPMIIVE 611

Query: 590  --LPSEESQNIELIG----PFEQVFMEIRCPDGGDGGRRNAFPA----------THEEIH 633
               P  +  +IE +      F+    E            ++F A          TH EI 
Sbjct: 612  NGRPRVQQFHIEELKDGLRTFDDFIREGLIEYLDVNEENDSFLAWNESAVNKTTTHMEIE 671

Query: 634  PTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIV 693
            P  +L  V+ L PY  HNQSPRN YQC M KQ +G        R D  LY L  PQ P+ 
Sbjct: 672  PFTLLGCVSALIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLSRIDTLLYLLVYPQRPMC 731

Query: 694  RTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLS 753
            +T T       + P G NA VAV++Y+GYD+EDA+++NK+S+DRG     +++ +   + 
Sbjct: 732  QTRTLELVNYVKLPAGHNATVAVMSYSGYDIEDALVMNKASLDRGFGRCIVFKKQVSAVK 791

Query: 754  DDGNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIY---------- 801
               N+     ++   N +   +   +++D DG+   G++   G+   + Y          
Sbjct: 792  KYANQT--ADRIIPPNAETSRQPKFALLDEDGIAKPGELAQKGQILINKYSPINTVDIVA 849

Query: 802  --DKTTNSWRTNSR---KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSS 856
              DK  +S   +S    K     FVD V +   +   L  K  +  R TR P +GDKFSS
Sbjct: 850  NSDKIPDSGYKSSYTAYKYENPAFVDKVMLTTGDDDQLLIK--LLMRSTRRPELGDKFSS 907

Query: 857  RHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKF 916
            RHGQKGVC  +    DMPF+ + G+ PD+I+NPH FPSRMTI  ++E +A K G L G F
Sbjct: 908  RHGQKGVCGIIVKQEDMPFTDL-GICPDIIMNPHGFPSRMTIGKMIELLAGKAGVLRGGF 966

Query: 917  MDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIF 976
               T F        GD   D SK L+ +        GF+Y G + + SGV G  L C IF
Sbjct: 967  GYGTCFG-------GDKVEDISKVLISK--------GFSYGGKDYVTSGVTGEPLQCFIF 1011

Query: 977  IGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYL 1036
             GP++YQ+L+HMV DK   R+ G    +TRQP +GR RGGG+R GEMERD L+ +GA+ L
Sbjct: 1012 FGPIFYQKLKHMVMDKMHARARGPTVTLTRQPTEGRARGGGLRLGEMERDCLIGYGASAL 1071

Query: 1037 LHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSK 1096
            + +RL   SD      C  CG +    +                        C  C+++ 
Sbjct: 1072 IMERLMISSDRFTVYACKKCGFLGYEGW------------------------CQYCKSTL 1107

Query: 1097 GMETVAMPYVFRYLAAELAAMNIKITLQLGDG 1128
             + T+ +PY  + L  EL AMNI   L+L D 
Sbjct: 1108 QVSTLQIPYACKLLFQELQAMNIVPKLKLEDA 1139


>gi|325186944|emb|CCA21488.1| PREDICTED: hypothetical protein [Albugo laibachii Nc14]
          Length = 1234

 Score =  362 bits (929), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 334/1177 (28%), Positives = 510/1177 (43%), Gaps = 187/1177 (15%)

Query: 28   DEGLSEMFDH-CRQAKISYTGKLMADVEFQYLDAGS--PVVRERFN-----------FGQ 73
            D   S MF H  R   ++Y+  L  DV  Q   A +  P   E               G 
Sbjct: 138  DGSTSVMFPHEARLRNLTYSAPLYVDVVCQKFQANATGPTKIEEMEPYDQVETPKEFIGM 197

Query: 74   FPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRS 133
             P+ML+++ C L     ++L  L E   + GGYF++NG E+V  +      N+     +S
Sbjct: 198  VPIMLRSQYCVLTHKTDKELTELNECVYDQGGYFLINGSEKVLIAQERMSNNHVYCFRKS 257

Query: 134  SFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRL-GFWLQGK-EYL---LPVGI 188
                       ++ V   VR   S++ +++Y    G   + G  ++    Y+   +PV I
Sbjct: 258  GVSKYSWVCETRSHVEHGVRP-TSTMYVQMYQRSGGKSAISGNQIRAVIPYIRQDIPVVI 316

Query: 189  VLKALVDTNDLEIFNHLTCCYD-------EKYKKEKGAVGSPLVSERVKIILAEVQDLSL 241
            + +AL    D EI  H+  CYD       E++K        P + E   I   EV     
Sbjct: 317  IFRALGFVADREILEHI--CYDFTDVELMERFK--------PSLEEAFVIQEQEV----- 361

Query: 242  TTRLQCLQHIGEHFQPVIDGLQSESYYA--VAETVIRDYIFVHLNDNNDKFNLLIFMLQK 299
                  L  IG     +  G      YA  + +  +  ++ V  ++   K   L +++ K
Sbjct: 362  -----ALDFIGRRGSAINVGKADRIRYAQDILQKEMLPHVGVEDHNETKKAYFLGYVVHK 416

Query: 300  LFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFD 359
            L          D+ D   N+ + L G L+    +   +   +  K  +Q  ++N GK F+
Sbjct: 417  LLMCSLGRIGEDDRDHYGNKRLDLAGPLLGSLFRILFKKLTKDVKTYLQKCVDN-GKDFN 475

Query: 360  FFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFIS 419
               LA I+       S+ I   +   L TG    Q       +AG +    RL +   +S
Sbjct: 476  L-TLA-IR-------SRTITNGLRYSLATGNWGMQ---KTASKAGVSQVLNRLTYASSLS 523

Query: 420  FFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSR 479
              R ++      G +    R+L    WG +CP  TP+G+  GL+ ++     + S    +
Sbjct: 524  HLRRLNTPLGREG-KQAQPRQLHNTHWGMICPAETPEGQAVGLVKNLALMAYI-SVGSPQ 581

Query: 480  GNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVA 539
              I +F       L       +    P+++    P    + ++G  VGV    E  ++V 
Sbjct: 582  APILEF-------LEEWATENLEEIKPQII----PHSTKIFVNGNWVGV--HREPNELVR 628

Query: 540  HLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV----RNISLPSEES 595
             LR L+      +  D EV  +   +      L ++T   +  RP+     N  L  +E 
Sbjct: 629  TLRSLR----RCVDIDAEVSVIRDLMNRE---LRIYTDAGRVCRPLFIVEENQLLLQKEQ 681

Query: 596  ----QN----------------IELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIH 633
                QN                +ELI   E+    + +   D G G ++     TH EIH
Sbjct: 682  VVKLQNHKITNYRWHNLLTDGVVELIDTEEEEVCMIAMEPKDVGLGTQQ----YTHCEIH 737

Query: 634  PTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIV 693
            P+ +L + A++ P+ DHNQSPRN YQ  M KQ MG      + R D     L  PQ P+V
Sbjct: 738  PSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVYCSNFRARMDTMANVLNYPQKPLV 797

Query: 694  RTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGM-------C------ 740
             T         E P+G NAIV + +YTGY+ ED++I+N+S++DRG+       C      
Sbjct: 798  TTRAMEFLHFRELPSGINAIVGIASYTGYNQEDSLIMNQSAIDRGLFRSTFYRCYVDQER 857

Query: 741  ----HGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIH---- 792
                HG    T  +   ++  K  R   L  R+    S H  +D+DGL   G  +     
Sbjct: 858  NKSPHGGSAATALVSNCEEFEKPSRDNCLGLRHG---SYHK-LDADGLVAPGTRVSGNDI 913

Query: 793  --------PGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRH 844
                    P     S+  +      + S +  E+  +D  +V +  + +  +   +RFR+
Sbjct: 914  IIGKTSPLPVSEDSSLEQRHQKRDASTSLRSHENGIID--SVMLTTNADGFKFTKVRFRN 971

Query: 845  TRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLES 904
             R P IGDKF+SRHGQKG     +   DMPF+ + G+ PD+I+NPHA PSRMT+  L+E 
Sbjct: 972  IRIPQIGDKFASRHGQKGTIGMTYRQEDMPFT-LEGITPDIIVNPHAIPSRMTVGHLIEC 1030

Query: 905  VAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYS 964
            +  K  S  G   DATPF +   +   DT               L   G+  HG EVLYS
Sbjct: 1031 LLGKVSSQTGDEGDATPFTDVTVQAIADT---------------LHNLGYQRHGNEVLYS 1075

Query: 965  GVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEME 1024
            G  G  LT +IFIGP +YQRL+HMV DK   RS G +  +TRQP++GR R GG+R GEME
Sbjct: 1076 GHTGRPLTAQIFIGPTFYQRLKHMVDDKIHSRSRGPVTMLTRQPMEGRAREGGLRMGEME 1135

Query: 1025 RDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP 1084
            RD L++HG+A  L DRL   SD +   VC +CG +  A                      
Sbjct: 1136 RDCLISHGSANFLMDRLFANSDAYRVHVCDICGIIAIANL-------------------- 1175

Query: 1085 KKVT--CHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
            +K+T  C  C+    +  + +PY  + L  EL +M+I
Sbjct: 1176 RKMTFECRNCRNKTQISQLHIPYSCKLLFQELMSMSI 1212


>gi|320101550|ref|YP_004177142.1| DNA-directed RNA polymerase subunit B' ;DNA-directed RNA polymerase
            subunit B' [Desulfurococcus mucosus DSM 2162]
 gi|319753902|gb|ADV65660.1| DNA-directed RNA polymerase, subunit B' ;DNA-directed RNA polymerase,
            subunit B' [Desulfurococcus mucosus DSM 2162]
          Length = 1165

 Score =  362 bits (928), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 334/1230 (27%), Positives = 534/1230 (43%), Gaps = 210/1230 (17%)

Query: 15   LVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLM-----------------------A 51
            LVR H++S++  L E L  + +  R+ +I+   +++                        
Sbjct: 26   LVRQHLDSYERFLKELLPSILEEFREIRIAEKTRIVIEKYRVDEPKWTSIEGIEESKSPM 85

Query: 52   DVEFQYLDAGSPV------------VRER-FNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
            +   + L   +PV             RE+       PVMLK+    L     ++LV++ E
Sbjct: 86   ECRLRNLTYATPVYVTVRIEDESGYTREQELKLMDLPVMLKSSIDPLSKLTPEELVAMGE 145

Query: 99   EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
            +  + GGYFI+NG E+    VI+ +++   + +           T  A V    R  +S 
Sbjct: 146  DPRDPGGYFIINGSEK----VIVAQEDLASNNIIVDAMPEGSSVTHVAKVTSVARGRRSQ 201

Query: 159  VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIF----------NHLTCC 208
            + ++     +G     F  QG ++  P  +++ AL   ++ EI           NHL   
Sbjct: 202  LVIERRK--DGVFYASF--QGHKF--PAVMLMVALGLASEAEILYATSLKPEVHNHLLPS 255

Query: 209  YDE------KYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGL 262
              +      K +  +GA    +   + +     V+        + L  I   F   I G 
Sbjct: 256  IIQIQEVLPKLEIPEGASEEEVERLKEEYRRRVVE--------EALDFIASKF---IIGK 304

Query: 263  QSESYYAVAETVIRDYIFVHLNDN---NDKFNLLIF---MLQKLFSLVDHTSVSDNPDSL 316
              E     A+ ++ + +  H+  +     +    +F   M+ ++  L       D+ D  
Sbjct: 305  PREERILRAQRLLDERLLPHIGTDPSPETRLRKAVFIGQMISRIIELYLGYRSPDDKDHY 364

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
            +N+ + L G ++   L+  +  + R+ K+ ++ ++    K        ++K V +  PS 
Sbjct: 365  RNKRLKLAGDMLATLLRAAIMGFSREIKEGVEKQLAKTRK-------VDLKMVFK--PS- 414

Query: 377  QIGTSIETMLKTGRL--ATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLR 434
                     + T RL  A  TG     R G +   +R N L  +S  R V    +  G  
Sbjct: 415  ---------IITDRLLHAMATGNWPGGRTGVSQLLDRTNMLSTLSHLRRVVSPLA-RGQP 464

Query: 435  TTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILR 494
                R+L    WG +CP  TP+G   GL+ ++     V+   D +            I  
Sbjct: 465  HFEARELHGTQWGRMCPFETPEGANIGLVKNLALMTNVSVGVDDK-----------EIEL 513

Query: 495  VLIGVGMIP------------SLPKLVKSGPPAVLS----------VLLDGRVVGVIPS- 531
            +L  +G++P             +  +++    A +           V L+G++VG   + 
Sbjct: 514  LLYRIGVVPLVSINTGDKSYKGILDIIREDVSAAVELSEKYSGWSKVFLNGKLVGYHRNG 573

Query: 532  SEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPG------LYLFTSPPKFVRPV 585
             E+ + +  LRR    ++ V    +  GYV   +    PG      + +    PK  R  
Sbjct: 574  EELARAIRELRRKGKISSEVNVAHINSGYVDEVVVNTDPGRIRRPLIVVENGKPKLTR-- 631

Query: 586  RNISLPSE---------ESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTG 636
             ++ +  E         +   IE + P E+    I    G  G        TH EI    
Sbjct: 632  EHVKMLEEGRLGFEDLVKQGIIEYLDPDEEENAYIALEPGSVGAEH-----THMEIWIPA 686

Query: 637  MLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTN 696
            +L + A++ PY +HNQSPRNMYQ  MAKQ++G      + R D + + L  PQ P+V+T 
Sbjct: 687  ILGITASIIPYPEHNQSPRNMYQSAMAKQSLGLYAANFQRRMDTRGHFLHYPQKPLVQTR 746

Query: 697  TYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDD 755
                 G +E P G N +VAVL YTGY+MEDA+ILNKSSVDRG+     ++   T++    
Sbjct: 747  AMDVIGYNERPAGQNMVVAVLTYTGYNMEDALILNKSSVDRGLARSTFFRLYTTVEYKYP 806

Query: 756  GNKVD------------RGQKLFRR-NKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYD 802
            G   D            RGQK + +  +D         + G   +G++  P       Y+
Sbjct: 807  GGIQDEITIPSTNIRGYRGQKAYEKLEEDGIVAPETPVTGGDVLIGKISPPRFLSAQEYE 866

Query: 803  KTTNSWRTNSR---KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHG 859
              +   R ++    +  E   VD V + M +  N  +   +R R  R P +GDKF+SRHG
Sbjct: 867  VGSTLTRQDTSVVMRHEEKGVVDTVLITMDSEGN--KLIKVRVRDLRIPELGDKFASRHG 924

Query: 860  QKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDA 919
            QKGV   L P  DMPF+   G+ PDLIINPHAFPSRMT+A L+ES+A K  +L G+  DA
Sbjct: 925  QKGVVGLLVPQYDMPFTE-EGVVPDLIINPHAFPSRMTVAQLMESIAGKAAALEGRTFDA 983

Query: 920  TPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGP 979
            TPF                K+ ++EL  +++  G++  G E +Y G  G  L   +FIG 
Sbjct: 984  TPF---------------YKTPIEELQVIIKRHGYSPTGEEAMYDGRTGELLDAPVFIGV 1028

Query: 980  VYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHD 1039
            VYYQ+L HMVSDK   R+ G +  +TRQP +GR R GG+R+GEME D L+ HG+A LL +
Sbjct: 1029 VYYQKLHHMVSDKMHARARGPVQILTRQPTEGRSRAGGLRWGEMEVDCLVGHGSAMLLKE 1088

Query: 1040 RLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGME 1099
             +   SD  +  VC LCGS+                      R   K  C   +    ++
Sbjct: 1089 AMTDRSDSTIIYVCELCGSMGWYD------------------RNKGKYMCPVHKERGVLK 1130

Query: 1100 TVAMPYVFRYLAAELAAMNIKITLQLGDGA 1129
             V + Y F+ L  EL ++ I+  L  G+ A
Sbjct: 1131 PVEVSYAFKLLLQELMSLGIRPRLITGEVA 1160


>gi|409095097|ref|ZP_11215121.1| DNA-directed RNA polymerase subunit B [Thermococcus zilligii AN1]
          Length = 1120

 Score =  362 bits (928), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 327/1202 (27%), Positives = 512/1202 (42%), Gaps = 199/1202 (16%)

Query: 15   LVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRE------- 67
            LVR H++S++  +D GL E+ D     K         +V+F  +  G PV +E       
Sbjct: 27   LVRQHLDSYNAFVDYGLQEVIDEFGGVKPDIPN---LEVKFGKIRVGEPVFQEAQGQRRP 83

Query: 68   ---------------------------------RFNFGQFPVMLKTRRCHLQGADSQKLV 94
                                                 G+ P+MLK++ C L G    +LV
Sbjct: 84   LYPMDARIRNLTYSAPLFLELIPVVNGIEQEPVEARIGELPIMLKSKICRLHGLSDGELV 143

Query: 95   SLKEEAAEMGGYFILNGLERVFRSV-------ILPKQNYPMSMVRSSFRDRREGYTDKAV 147
             L E+  + GGYFI+NG ERV  S+        L +++     V +     R GY  +A+
Sbjct: 144  KLGEDPKDPGGYFIINGSERVIVSIEDLAPNRTLVERDERQERVIAKVFSYRHGY--RAL 201

Query: 148  VIRCVRKDQSSVTLKLYYLL-NGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLT 206
            +    RKD       LY  + N S  + F             V++AL   +D EI   ++
Sbjct: 202  ITVERRKDGI-----LYVTIPNVSKPVKFVY-----------VMRALGLLSDREIVEAVS 245

Query: 207  CCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLS-LTTRLQCLQHIGEHFQPVIDGLQSE 265
                            P + +   I+L  ++D S + T+   L +IG+   P   G   E
Sbjct: 246  --------------DDPRIQQ---ILLDNLEDASDIRTQEDALDYIGKLSLP---GQPKE 285

Query: 266  SYYAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEI 321
                 AE +I + +  H+     +   K   L  M  K+  L       D+ D   N+ +
Sbjct: 286  YRLRRAEHIIDNNLLPHMGVGPENRKAKAYYLGMMALKVLELSLGLRGEDDKDHYANKRL 345

Query: 322  LLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTS 381
             L G L+    +      ++  +  +    +  G+++ F N+     V        +   
Sbjct: 346  KLAGDLLKDLFRVAFGQLVKDMEYQMTKTYQRKGERYTFQNIQRF--VRNSIRPDVLSER 403

Query: 382  IETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKL 441
            IE  L TG            R G +   +R N++  +S  R V            + R L
Sbjct: 404  IEHALATGSWPGG-------RTGVSQLLDRTNYMSTLSHLRRVTSPLDREQPHFEA-RDL 455

Query: 442  LPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGM 501
                WG +CP  TP+G  CGL+ ++    ++ +            K+R  + ++ I    
Sbjct: 456  HGTHWGRICPTETPEGPNCGLVKNLALMAQITTGLPE-------EKVRVYLEKLGI---- 504

Query: 502  IPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSE--IEKVVAHLRRLKVS----AASVIPDD 555
               +P   +   P +  V L+G ++G +      +E++    R  ++S     A     D
Sbjct: 505  ---VPIEERRPAPGLYRVYLNGVLIGTVEKGRELVERIKTDRRAGRISDVINVALYEEGD 561

Query: 556  LEVGYVPLSLGGAY-PGLYLFTSPPKFVRP-VRNISLPSEESQNIELIGPFEQVFMEIRC 613
            +   Y+    G    P + +    PK  R  V  I   +    ++  +G  E +  E   
Sbjct: 562  VREIYINSDDGRVRRPLIIVENGKPKLTREHVEGIKNGTLAWSDLIRMGVIEYLDAE--- 618

Query: 614  PDGGDGGRRNAFPAT----------HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMA 663
                     NA+ AT          H E+ P  +L + A+L PY +HN +PRN Y   MA
Sbjct: 619  ------EEENAYVATWPWEVTGEHTHLELMPAAILGIPASLVPYPEHNAAPRNTYGAGMA 672

Query: 664  KQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYD 723
            KQ++G      + R D + + L  PQ P+V +      G +E P G N +VAVL+Y GY+
Sbjct: 673  KQSLGLGAANFRLRIDTRGHLLHYPQVPLVNSRIMKAVGFEERPAGQNFVVAVLSYHGYN 732

Query: 724  MEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVDRGQKLFRRNKD--AKSLHSVID 780
            MEDA+I+NK+S++RG+     ++T E  +    G + DR +K     K       +  +D
Sbjct: 733  MEDAVIINKASIERGLGRSTFFRTYEAEEKRYLGGQTDRFEKPDPTIKGYLGDRYYRNLD 792

Query: 781  SDGLPY-----------VGQMIHPG--EPYCSIYDKTTNSWRTNS--RKGSESVFVDYVA 825
             DG+ +           VG+   P   E    +        R  S   + SE   VD V 
Sbjct: 793  EDGIIFPESRVEGKDVLVGRTSPPRFLEEQGRLGGIALQERRETSVAARPSEEGIVDKVI 852

Query: 826  VDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDL 885
            +    + +  +   +  R  R P +GDKF+SRHGQKGV   + P  DMP++  +G+ PDL
Sbjct: 853  I--TETGDGTKLVKVTVRDLRIPELGDKFASRHGQKGVVGLIVPQEDMPWTE-SGIVPDL 909

Query: 886  IINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDEL 945
            I+NPH  PSRMT+  L+E++  K  SL G+ +D T F    ++                 
Sbjct: 910  IVNPHGIPSRMTVGQLIEAIGGKVASLKGRRVDGTAFIGEPEEKLRRELE---------- 959

Query: 946  GEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQIT 1005
                   GF ++G E+LY G+ G  L  EIF+G +YYQRL HMV+DK   RS G +  +T
Sbjct: 960  -----ELGFKHNGREILYDGITGRRLEAEIFVGVIYYQRLHHMVADKMHARSRGPVQVLT 1014

Query: 1006 RQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFI 1065
            +QP +GR R GG+RFGEMERD L+ HGAA LL +RL   SD     VC  CG +     +
Sbjct: 1015 KQPTEGRAREGGLRFGEMERDVLIGHGAAMLLIERLLEESDKTEVWVCENCGHIA----L 1070

Query: 1066 HPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
              ++R               +V C  C   + +  V + Y F+ L  EL AM I+ +L+L
Sbjct: 1071 EDKRR--------------DRVYCPVCGEEERISKVEISYAFKLLLDELKAMVIRPSLRL 1116

Query: 1126 GD 1127
             D
Sbjct: 1117 ED 1118


>gi|256081823|ref|XP_002577167.1| DNA-directed RNA polymerase III subunit [Schistosoma mansoni]
 gi|360043957|emb|CCD81503.1| putative dna-directed RNA polymerase III subunit [Schistosoma
            mansoni]
          Length = 1126

 Score =  361 bits (927), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 321/1149 (27%), Positives = 500/1149 (43%), Gaps = 175/1149 (15%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR   ++Y G+++ DV F  +     V ++    G+ P+MLK+  C L G    +L+ LK
Sbjct: 79   CRLRDLTYAGEILVDVTF--VRQNEVVSKKGVLIGRMPIMLKSSICVLNGKSPSELMRLK 136

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            E   + GGYFI+ G E+V   V++ +Q     ++     D + G            K ++
Sbjct: 137  ECPLDPGGYFIIGGTEKV---VLMQEQTSKNRLIIEE--DSKRGLVCSVTSSSAQTKSKT 191

Query: 158  SVTLK--LYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
            ++  K   +YL + S  +          +P+ I+ KA+  T+D E+   +          
Sbjct: 192  NIVTKDDKFYLSHNSFIVD---------VPIAILFKAMNITSDQELLQLI---------G 233

Query: 216  EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHF-QPVIDGLQSESYYAVAETV 274
             + +V +  V   +K+ L    + ++ T L     +     QP              +  
Sbjct: 234  TEESVWANFVPS-LKLCL----EYNIHTCLDACNWLHSRLRQPRYRTAFGADIILEIQRF 288

Query: 275  IRDYIFVHLNDNNDKFNLLIFMLQKL---FSLVDHTSVSDNP-DSLQNQEILLPGHLITI 330
            +RD I  H+      F    F L ++     L +   +  N  D   N+ I L G L+ +
Sbjct: 289  LRDIIITHVEMEKLNFAPRAFFLGQMVRYLILANEKRIPVNDRDFYGNKRIELAGSLLAL 348

Query: 331  YLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGR 390
              ++  + +  +   L   +I+   +   F    +IK  M      +  +S   ++K  R
Sbjct: 349  LFEDVFKTF-NEDLWLTVSKIDTKRRCTPFDISRHIKTWMITEQLNRAISSGNWIIKRFR 407

Query: 391  LATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPESWGFL 449
            +          R G T    RL+++  +         + F   R  S  R +    WG +
Sbjct: 408  M---------MRHGVTQVVSRLSYVAALGHM--TRMTSQFEKTRKVSGPRSIHASQWGLI 456

Query: 450  CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
            CP  TP+GE CGL+ ++   C V    D    I   S   T               P   
Sbjct: 457  CPSDTPEGEACGLVKNVALMCHVTVEVDDAHLIELISNYYT--------------FPLYQ 502

Query: 510  KSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAY 569
                     + ++G+ +G   +    K+   +R L+ S           G+V + +  AY
Sbjct: 503  MRYAKNEYVIYVNGKPIGF--TQHPGKLCVLIRGLRRSGRI-------HGFVSVYIKQAY 553

Query: 570  PGLYLFTSPPKFVRP------------------VRNISLPSEESQNIELIGPFE------ 605
              +++ +   +F RP                  +R+  L  ++     L+   +      
Sbjct: 554  QCVHVVSDGGRFCRPYIILCNGRPLVTESVLQDLRHNVLNWDDLLKKGLVEYLDVNELND 613

Query: 606  -QVFMEIRC-PDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMA 663
              V M+  C  DG         PAT        +L VVA L PY DHNQSPRN YQC M 
Sbjct: 614  CLVAMDESCLTDGNHYTHMEIDPAT--------ILGVVAGLIPYPDHNQSPRNTYQCAMG 665

Query: 664  KQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYD 723
            KQ +G      + R D     +  PQ P+V++ T      DE P G NA+VA+++Y+GYD
Sbjct: 666  KQAIGTVALNQQIRFDTLQCQMVYPQKPLVQSKTIQMMHFDELPAGQNAVVAIMSYSGYD 725

Query: 724  MEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR--GQKLFRRNKDAKSLHSVID 780
            +EDA+++N++S+DRG     +Y+   + L    N V DR  G  + R     +    V+ 
Sbjct: 726  VEDALVINQASIDRGFARACVYRRSGVHLKMHENAVYDRLMGPSIERETGVLRRGDEVLQ 785

Query: 781  SDGLPYVGQMIH----------PGEPYCSIYDKTTN-SWRTNS-------------RKGS 816
            +DG+ Y+G  ++          P     ++ D   + S   N+              KG 
Sbjct: 786  ADGVAYIGACVNDRQILINKEMPVVSSSAVLDNAGSLSLNVNTPENATEFKRCPVDYKGI 845

Query: 817  ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS 876
            E  +V+ V      S+       I  R TR P +GDKFSSRHGQKGV   +    D+PFS
Sbjct: 846  EPSYVEKVM--FSTSEGNQAVVKILLRQTRRPEVGDKFSSRHGQKGVVGLIVRQEDLPFS 903

Query: 877  GVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTD 936
               G+ PD+I+NPH FPSRMT+  LLE + +K G++ GK  D + F+       GD    
Sbjct: 904  -TNGLTPDIIMNPHGFPSRMTVGKLLEVLGSKAGAIEGKIRDGSAFS-------GDPAEV 955

Query: 937  ESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVR 996
             S+ L+D         G++Y G E+LYSGV G  L   I+ GPVYYQRL+HMV DK   R
Sbjct: 956  LSQVLIDH--------GYHYLGKEILYSGVTGAPLEAFIYFGPVYYQRLKHMVMDKVHAR 1007

Query: 997  STGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLC 1056
            S G +  +TRQP +GR R GG+R GEMERD  +A+G + LL +RL   SD + A VC  C
Sbjct: 1008 SRGPVTALTRQPTEGRSREGGLRVGEMERDCFIAYGTSQLLLERLLLSSDAYDACVCEKC 1067

Query: 1057 GSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAA 1116
            G + T+    P                     C  C++S+ + +V MPY  + L  EL  
Sbjct: 1068 GLLATS----PN-------------------WCQYCRSSRQVVSVRMPYACKLLFQELMC 1104

Query: 1117 MNIKITLQL 1125
            M I   L+L
Sbjct: 1105 MRILPRLRL 1113


>gi|254581920|ref|XP_002496945.1| ZYRO0D11770p [Zygosaccharomyces rouxii]
 gi|238939837|emb|CAR28012.1| ZYRO0D11770p [Zygosaccharomyces rouxii]
          Length = 1224

 Score =  361 bits (927), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 323/1134 (28%), Positives = 484/1134 (42%), Gaps = 173/1134 (15%)

Query: 71   FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSM 130
             G+ P+ML+++ C+L  A    L  LKE   +MGGYFI+NG E+V     L  Q      
Sbjct: 167  IGRLPIMLRSKNCYLSDATESDLYKLKECPFDMGGYFIINGSEKV-----LIAQERSAGN 221

Query: 131  VRSSFRDRREGYTDKAVVIRCVRKDQ----SSVTLKLYYLLNGSVR-LGFWLQGKEYLLP 185
            +   F+            IR   +      S++ +KL+     S R +   L   +  +P
Sbjct: 222  IVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLFAREGNSSRTIKATLPYIKQDIP 281

Query: 186  VGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAE---VQDLSLT 242
            + I+ +AL    D EI  H+  CYD         V    + E +K  + +   +QD    
Sbjct: 282  IVIIFRALGIIPDGEILEHI--CYD---------VNDWQMLEMLKPCVEDGFVIQD---- 326

Query: 243  TRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLND----NNDKFNLLIFMLQ 298
             R   L  IG     +  G++ E     A  +++     H+       + K   L +M+ 
Sbjct: 327  -RETALDFIGRRGTAL--GIKKEKRIQYARDILQKEFLPHITQLEGFESRKAFFLGYMIN 383

Query: 299  KLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKF 358
            +L          D+ D    + + L G L+    K       R   + +Q  +E   K F
Sbjct: 384  RLLLCALDRRDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTRDIFRYMQRTVE-EAKDF 442

Query: 359  DFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFI 418
                  N+K  +    +K I + ++  L TG    Q    +  RAG +    R  +   +
Sbjct: 443  ------NMKLAIN---AKTITSGLKYALATGNWGEQKKA-MSSRAGVSQVLNRYTYSSTL 492

Query: 419  SFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDS 478
            S  R  +      G +    R+L    WG +CP  TP+G+ CGL+ +++    ++   D 
Sbjct: 493  SHLRRTNTPIGRDG-KLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDP 551

Query: 479  RGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV--IPSSEIEK 536
                         I+  L   GM P L   +    P    V ++G   GV   P+  +E 
Sbjct: 552  -----------MPIITFLSEWGMEP-LEDYIPHQSPEATRVFVNGVWHGVHRNPARLMET 599

Query: 537  VVAHLRRLKVSAASVIPDDLEVGYVPL--SLGGAYPGLYLFTSPPKFVRPVRNI------ 588
            +    R+  ++    +  D+    + +    G  Y  L++        R    I      
Sbjct: 600  LRTLRRKGDINPEVSMVRDIREKELKIFTDAGRVYRPLFIVDDDETLNRKELRIRKGHIS 659

Query: 589  SLPSEESQNIELIGPF------------------------EQVFMEIRCPDGGDGGRRNA 624
             L + E Q+IE  G F                        E+  +    P+  +  + N 
Sbjct: 660  KLMATEYQDIE--GGFEDSEEYTWTSLLNDGLVEYIDAEEEETILISMQPEDLEPVQENT 717

Query: 625  F-----------PATHE-------EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQT 666
            F            ATH        E+HP+ +L V A++ P+ DHNQSPRN YQ  M KQ 
Sbjct: 718  FNEDDDDLARRIKATHHATTFTHCEVHPSMILGVAASIIPFPDHNQSPRNTYQAAMGKQA 777

Query: 667  MGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMED 726
            MG  +     R D     L  PQ P+  T         E P G NAIVA+  Y+GY+ ED
Sbjct: 778  MGVFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQED 837

Query: 727  AMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSV---IDSDG 783
            +MI+N+SS+DRG+     +++        G  +    +  +R    +  H     +D DG
Sbjct: 838  SMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDG 897

Query: 784  LPYVGQMIHPGEPYCSIYDKTT---------------NSWRTNSR--KGSESVFVDYVAV 826
            L   G  +  GE    I  KTT               +S R  S   + +E+  VD + +
Sbjct: 898  LIAPGVRV-SGEDI--IIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQILI 954

Query: 827  DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLI 886
               N   L +   +R R T+ P IGDKF+SRHGQKG     +   DMPF+   G+ PDLI
Sbjct: 955  -TTNQDGL-KFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYGREDMPFTA-EGIVPDLI 1011

Query: 887  INPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELG 946
            INPHA PSRMT+A L+E + +K  +L G   DA+PF +                 V+ + 
Sbjct: 1012 INPHAIPSRMTVAHLIECLLSKVAALSGNEGDASPFTDIT---------------VEGIS 1056

Query: 947  EMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITR 1006
            ++LR  G+   G EV+Y+G  G +L  +IF GP YYQRLRHMV DK   R+ G M  +TR
Sbjct: 1057 KLLREHGYQSRGFEVMYNGHTGKKLMSQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTR 1116

Query: 1007 QPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSV-LTATFI 1065
            QP++GR R GG+RFGEMERD ++AHGAA  L +RL   SD     +C +CG + + A   
Sbjct: 1117 QPVEGRSRDGGLRFGEMERDCMIAHGAAAFLKERLMEASDAFRVHICGICGLMSVVAKLN 1176

Query: 1066 HPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
            H Q                    C  C     +  + +PY  + L  EL AMNI
Sbjct: 1177 HNQ------------------FECRGCDNKIDIYQIHIPYAAKLLFQELMAMNI 1212


>gi|154342160|ref|XP_001567028.1| putative DNA-directed RNA polymerase II subunit 2 [Leishmania
            braziliensis MHOM/BR/75/M2904]
 gi|134064357|emb|CAM42447.1| putative DNA-directed RNA polymerase II subunit 2 [Leishmania
            braziliensis MHOM/BR/75/M2904]
          Length = 1185

 Score =  361 bits (926), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 319/1163 (27%), Positives = 512/1163 (44%), Gaps = 178/1163 (15%)

Query: 36   DHCRQAKISY--TGKLMADVEFQYLDAGSP--VVRERFNFGQFPVMLKTRRCHLQGADSQ 91
            + CR   ++Y    ++   VE  +  A +P          G+ P+MLK+ RC+L G D  
Sbjct: 127  NECRLRDMTYDAQAQVTLGVELYHPHADTPHDTFLRNVELGRIPIMLKSMRCNLSGKDED 186

Query: 92   KLVSLKEEAAEMGGYFILNGLERVF------------------------RSVILPKQNYP 127
            +L  L E   + GGYF++NG E+V                         +S++    N P
Sbjct: 187  ELPRLNECPHDQGGYFVINGTEKVLIAQERQAANHVYTFSRQKGLLCEVKSIVEGSLNKP 246

Query: 128  MSM-VRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPV 186
             ++ +   +R+R  G   ++++ R  + D+   T+ L+ L     R    +  KE L   
Sbjct: 247  RTLQIIMPYRNRGPGSGFESLMCRVAQMDE---TIPLFVLF----RAMDMVADKEIL--- 296

Query: 187  GIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQ 246
              V+  L DT  LE+                   GS          +++   L + TR +
Sbjct: 297  QTVVPDLKDTAMLELLR-----------------GS----------MSDASTLQIFTREE 329

Query: 247  CLQHIGEHF--QPVIDGLQSESYYAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQKL 300
             L +IG     Q  +  LQ E     AE+++   +  H+    + N  K   + +M+ KL
Sbjct: 330  ALGYIGRRLGKQDAMANLQRE-----AESLLMRDLLPHMGTDPSANRTKCLYMGYMVHKL 384

Query: 301  FSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDF 360
              +        + D L ++ I + G L+T+ L+  L    ++  K +QD   N    F F
Sbjct: 385  LLVALGRHEETDRDFLGHKRIDVAGTLLTVQLQTFLAQVRKEMIKTLQDHAANPRGVFSF 444

Query: 361  FNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISF 420
              + + + V +    + + T     LKTG + T          G      RL +   +S 
Sbjct: 445  GRVIHSRLVTD-GLRRCLATGNFGDLKTGNIKT----------GVAQTLNRLTYSSSLSN 493

Query: 421  FRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRG 480
             R +    + A  + T  R L    WG++CPV TP+G   GLL ++   C +     SRG
Sbjct: 494  LRRIQNPIA-ASSKATRPRNLHCTQWGYICPVETPEGGSIGLLKNVALMCLM-----SRG 547

Query: 481  NIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAH 540
               D +++  ++   + G   I     L  +    V  V ++G ++GV      E+++  
Sbjct: 548  T--DHAEVVQAVQARIDGFRTI----GLEDTADVRVARVFVNGTMIGV--DRNPERLLHD 599

Query: 541  LRRLKVSA-----ASVIPDDLEVGYVPLSLGG--AYPGLYLFTSPPKFVRPVRNISLPSE 593
            LR  + +       S++ D  +      S GG    P   +     K  +      L SE
Sbjct: 600  LRTRRRNGELSNEVSIVRDIRDREIRVFSDGGRCLRPLFVVENCHLKLRKSSMRDLLVSE 659

Query: 594  ES---QNIELIGPFEQVFMEIRCPDGGDGGRRNAFPA--------THEEIHPTGMLSVVA 642
            ++   ++I      ++ ++E+   +  D       P+        +H E+ P+ +L + A
Sbjct: 660  KAGGKKSISWNTVLKKGYVELIDCEEEDSLLVAMTPSEVEKNYYYSHCEMDPSMILGICA 719

Query: 643  NLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYG 702
            ++ PY +HNQSPRN YQ  M KQ MG        R D   + L  PQ P+VRT   T   
Sbjct: 720  SIIPYPNHNQSPRNTYQSAMGKQAMGIYASNFNMRMDTTAHVLFYPQKPLVRTKAMTYMH 779

Query: 703  IDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRG 762
             ++ P G NA+VA+  Y+GY+ ED++I+++S+V+RG      +++      ++  K D  
Sbjct: 780  SNDLPAGHNAVVAISCYSGYNQEDSIIMSRSAVERGFFRSAFWRS--FKAKEERQKRDAL 837

Query: 763  QKLFRRNKDA----KSLHSVIDSDGLPYVGQMIHPGE---------PYCSIYDKTTNSWR 809
            +     N++     ++ +S +D+DGL   G  +  G+         P   +   TT + +
Sbjct: 838  ETFENPNREVCRVKRADYSKLDTDGLIKPGMRVLGGDVVVGKTIPLPEADLDKLTTGNTK 897

Query: 810  TNSRKGS------ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGV 863
               R  S      E   V+ V + M +S      A ++ R  + P IGDKF SRHGQKG 
Sbjct: 898  ITKRDASITSRTTEKGVVEKVMLTMNSSDRF---AKVKIRTIKIPNIGDKFCSRHGQKGT 954

Query: 864  CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFA 923
                +   DMPF+   G+ PDLIINPHA PSRMT+A L+E++A K     G  + ATPF 
Sbjct: 955  NGIQFRQEDMPFNR-DGVVPDLIINPHAIPSRMTVAHLIETLAGKVACYKGGEVYATPFC 1013

Query: 924  NSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQ 983
            + V               VD+ G+ L   G   +G E LY+G  G  L   IF GP +YQ
Sbjct: 1014 SVV---------------VDDFGKALHALGSQRYGNECLYNGHTGLPLDHLIFFGPTFYQ 1058

Query: 984  RLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHT 1043
            RL+H+  DK   R  G +  + RQP +GR   GG+RFGEMERD +L++GA+  L +RL  
Sbjct: 1059 RLKHLSGDKIHARPRGPLQPLVRQPTEGRAHEGGLRFGEMERDCMLSYGASQWLRERLFR 1118

Query: 1044 CSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAM 1103
             SDY+   VC+ CG++  A                       +  C  C+    +  V M
Sbjct: 1119 VSDYYTVHVCNHCGTICVAD------------------TKLNRYQCKGCENDTRISQVLM 1160

Query: 1104 PYVFRYLAAELAAMNIKITLQLG 1126
            PY  + L  EL +M I   L  G
Sbjct: 1161 PYACKLLFQELMSMTILPRLGTG 1183


>gi|301101902|ref|XP_002900039.1| DNA-directed RNA polymerase II 135 kDa polypeptide [Phytophthora
            infestans T30-4]
 gi|262102614|gb|EEY60666.1| DNA-directed RNA polymerase II 135 kDa polypeptide [Phytophthora
            infestans T30-4]
          Length = 1202

 Score =  361 bits (926), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 328/1170 (28%), Positives = 509/1170 (43%), Gaps = 173/1170 (14%)

Query: 28   DEGLSEMFDH-CRQAKISYTGKLMADVEFQYLDAGS--PVVRERFN-----------FGQ 73
            D   S MF H  R   ++Y+  L  DV  Q   A S  P   E               G 
Sbjct: 110  DGSTSVMFPHEARLRNLTYSAPLYVDVVCQKYQAPSSGPANLEDMEPYDQVETPKEFIGM 169

Query: 74   FPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRS 133
             P+ML+++ C L     ++L  L E   + GGYFI+NG E+V  +      N+     ++
Sbjct: 170  VPIMLRSQYCVLTHKTDKELTELNECVYDQGGYFIINGSEKVLIAQERMSNNHVYCFRKN 229

Query: 134  SFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNG-SVRLGFWLQGK-EYL---LPVGI 188
            +          ++ V   VR   S++ +++Y    G S   G  ++    Y+   +PV I
Sbjct: 230  AASKYSWVCETRSHVEHGVRP-TSTMYVQMYQKGGGKSAITGNQIRAVIPYIRQDIPVVI 288

Query: 189  VLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCL 248
            + +AL    D EI  H+  CYD              + ER K  L E     +  +   L
Sbjct: 289  IFRALGFVADREILEHI--CYD---------FSDAELMERFKSSLEEA--FVIQEQEVAL 335

Query: 249  QHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHL--NDNND--KFNLLIFMLQKLFSLV 304
              IG     +   +        A+ +++  +  H+   D+N+  K   L +++ KL    
Sbjct: 336  DFIGRRGSAI--NVSKADRIRYAQDILQKEMLPHVGVEDHNETKKAYFLGYVVHKLLMCS 393

Query: 305  DHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLA 364
                  D+ D   N+ + L G L+    +   +   +  K  +Q  ++N GK F+   LA
Sbjct: 394  LGRIGEDDRDHYGNKRLDLAGPLLGGLFRILFKKLTKDVKSFLQKCVDN-GKDFNL-TLA 451

Query: 365  NIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAV 424
             I+       S+ I   +   L TG    Q       +AG +    RL +   +S  R +
Sbjct: 452  -IR-------SRTITNGLRYSLATGNWGMQKS---ASKAGVSQVLNRLTYASSLSHLRRL 500

Query: 425  HRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRD 484
            +      G +    R+L    WG +CP  TP+G+  GL+ ++     + S    +  I +
Sbjct: 501  NTPLGREG-KQAQPRQLHNTHWGMICPAETPEGQAVGLVKNLALMAYI-SVGSPQAPILE 558

Query: 485  FSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRL 544
            F       L       +    P+++    P    + ++G  VGV    E  +++  LR L
Sbjct: 559  F-------LEEWATENLEEIKPQII----PHSTKIFVNGNWVGV--HREPNELIRTLRSL 605

Query: 545  KVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV-------------RNISLP 591
            +      +  D EV  +   +      L ++T   +  RP+             + + L 
Sbjct: 606  R----RCVDIDAEVSVIRDLMNKE---LRIYTDAGRVCRPLFIVEDNQLLLQKEQVVKLQ 658

Query: 592  SEESQN-----------IELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGML 638
            + +  N           +ELI   E+    + +   D G G + +    TH EIHP+ +L
Sbjct: 659  NHKITNYRWHNLLTDGVVELIDTEEEEVCMIAMEPKDVGTGSQIH----THCEIHPSMIL 714

Query: 639  SVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTY 698
             + A++ P+ DHNQSPRN YQ  M KQ MG      + R D     L  PQ P+V T   
Sbjct: 715  GICASIIPFPDHNQSPRNTYQSAMGKQAMGIYCSNFRARMDTMANVLNYPQKPLVTTRAM 774

Query: 699  TKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGN- 757
                  E P+G NAIV + +YTGY+ ED++I+N+S++DRG      Y+   ID   + + 
Sbjct: 775  EYLHFRELPSGINAIVGIASYTGYNQEDSLIMNQSAIDRGFFRSTFYRC-YIDQERNKSP 833

Query: 758  -----------KVDRGQKLFRRN---KDAKSLHSVIDSDGLPYVGQMIH----------- 792
                         +  +K  R N       S H  +D+DGL   G  +            
Sbjct: 834  HGGPGGGAGGANCEEFEKPSRENCLGLRHGSYHK-LDNDGLVAPGTRVSGNDIIIGKTSP 892

Query: 793  -PGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIG 851
             P     S+  +      + + +  E+  +D  +V +  + +  +   +RFR+ R P IG
Sbjct: 893  LPQSEDSSLEQRHQKRDASTALRSHENGIID--SVMLTTNADGFKFTKVRFRNIRVPQIG 950

Query: 852  DKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGS 911
            DKF+SRHGQKG     +   DMPF+ V G+ PD+++NPHA PSRMT+  L+E +  K  S
Sbjct: 951  DKFASRHGQKGTIGMTYRQEDMPFT-VEGITPDIVVNPHAIPSRMTVGHLVECLLGKVSS 1009

Query: 912  LHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTEL 971
              G   DATPF +   +   DT               L   G+  HG EV+YSG  G  L
Sbjct: 1010 QTGDEGDATPFTDVTVQAIADT---------------LHNLGYQKHGNEVMYSGHTGRRL 1054

Query: 972  TCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAH 1031
            T +IFIGP +YQRL+HMV DK   RS G +  +TRQP++GR R GG+R GEMERD L++H
Sbjct: 1055 TAQIFIGPTFYQRLKHMVDDKIHSRSRGPVTMLTRQPMEGRAREGGLRMGEMERDCLISH 1114

Query: 1032 GAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVT--C 1089
            G+A  L DRL   SD +   VC +CG +  A                      +K+T  C
Sbjct: 1115 GSANFLMDRLFANSDAYRVHVCDICGIIAIANL--------------------RKMTFEC 1154

Query: 1090 HACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
              C+    +  V +PY  + L  EL AM+I
Sbjct: 1155 RTCRNKTQISQVHIPYSCKLLFQELMAMSI 1184


>gi|407461849|ref|YP_006773166.1| DNA-directed RNA polymerase subunit B [Candidatus Nitrosopumilus
            koreensis AR1]
 gi|407045471|gb|AFS80224.1| DNA-directed RNA polymerase subunit B [Candidatus Nitrosopumilus
            koreensis AR1]
          Length = 1115

 Score =  361 bits (926), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 332/1193 (27%), Positives = 515/1193 (43%), Gaps = 196/1193 (16%)

Query: 15   LVRHHIESFDYMLDEGLSEMFDHCRQAKI--------------------------SYTGK 48
            + R H+ SFD  L+ GL  + +   Q  I                          S T  
Sbjct: 21   VARQHLNSFDEFLERGLQSIINEVGQIDIENAEYPYKIQLGKVKLQQPRMMELDGSITHI 80

Query: 49   LMADVEFQYLDAGSPVVRE------------RF-NFGQFPVMLKTRRCHLQGADSQKLVS 95
              A+   + +   +PV+ E            RF + G  PVM K+  C L    +QKLV 
Sbjct: 81   TPAEARLRNVSYSAPVMMEASVVEDGKILESRFVHIGDVPVMAKSNACILHNFSTQKLVE 140

Query: 96   LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
              E+  + GGYFI+NG ERV   V L   +Y   +V       RE      V    V   
Sbjct: 141  HGEDPNDPGGYFIINGSERVI--VGLEDLSYNKIIVD------RETVGGNIVHKAKVYSS 192

Query: 156  QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
                  KL  ++     +   + G    +PV  +++AL   +D EI   ++   DE   +
Sbjct: 193  IVGYRAKLELVMKSDGLIVARIPGSPVDIPVVTLMRALGLESDREIAAAVSLV-DELQDE 251

Query: 216  EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
             +G+               +  D+   T    + +I +   P   G+  E     AET++
Sbjct: 252  LEGS-------------FEKAGDVP--TAKDAIVYISKRIAP---GMLEEFQIKRAETLL 293

Query: 276  RDYIFVHL----NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIY 331
               +  HL     +  +K   L     KL  L       D+ D   N+ I   G ++   
Sbjct: 294  DWGLLPHLGKHPENRKEKAQFLGEAACKLLELKLGWIKPDDKDHYGNKVIKFAGQMLADL 353

Query: 332  LKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRL 391
             +    + +R  K     ++E +G+K                    +  +I   + T +L
Sbjct: 354  FRTAFRNLVRDMKY----QLERSGQKRGI---------------NAVAAAIRPGIITDKL 394

Query: 392  --ATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT---SVRKLLPESW 446
              A  TG   + R G T   +R N+L  IS  R +    S    RT      R L    +
Sbjct: 395  NNAIATGNWGRGRVGVTQLLDRTNYLSTISHLRRIQSPLS----RTQPNFEARDLHATHF 450

Query: 447  GFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLP 506
            G +CP  TP+G  CGL+ ++  +  ++    S   +     + T        V    +  
Sbjct: 451  GRICPSETPEGSNCGLVKNLALSGIISVNVPSEEIVEKLYDLGT--------VHFFDAKE 502

Query: 507  KLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLG 566
             L K G      + +DG+++G     E  ++   LR L+ +  S I   + V +    + 
Sbjct: 503  DLKKDG----TRIFVDGKLIGYYKDGE--QLAESLRDLRRN--SKIHPHVGVSFHKSEIE 554

Query: 567  GAYPGLYLFTSPPKFVRPV---------------RNISLPSEESQNIELIGPFEQVFM-- 609
            G+   LY+  +  + +RP+                 IS       ++  +G  E +    
Sbjct: 555  GSTRRLYVNCNAGRVLRPLIIIKDNKPLLTADLLDKISKKLISWTDLLRMGVLEMIDANE 614

Query: 610  EIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGF 669
            E  C    D   ++    TH E+ P  +L   A++ PY +HNQSPRN Y+  MAKQ++GF
Sbjct: 615  EENCYVTLD--EKDTKKHTHLEVFPPAILGAGASIIPYPEHNQSPRNTYESAMAKQSLGF 672

Query: 670  SVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMI 729
            S   +      + + +  PQ PIV T      G+++ P G N +VAVL + GY++EDA++
Sbjct: 673  STPMMNTSTYVRQHFMLYPQVPIVNTKAMKLLGLEDRPAGQNCVVAVLPFDGYNIEDAIV 732

Query: 730  LNKSSVDRGMCHG---QIYQTET------------IDLSDD---GNKVDRGQKLFRRNKD 771
            L+K+SVDRG+      +IY  E             I  ++D   G K +R  +L   +  
Sbjct: 733  LSKASVDRGLGRTFFYRIYDAEAKQYPGGMRDAFEIPNAEDNIRGYKGERAYRLLEEDGV 792

Query: 772  AKSLHSVIDSDGLPYVGQMIHPG--EPYCSIYDKTTNSWRTNSRKG---SESVFVDYVAV 826
              +   V   D L  +G+   P   E Y     +++  +R ++  G   SE+  VD V +
Sbjct: 793  VAAEAPVKGGDIL--IGKTSPPRFMEEYREF--ESSGPYRRDTSIGVRPSETGVVDTVVM 848

Query: 827  DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLI 886
               N      K  IR R  R P IGDKF+SRHGQKG+   L    D+P++  +GM PD++
Sbjct: 849  TQSNEGGKMYK--IRARDMRIPEIGDKFASRHGQKGILGILAKAEDLPYTA-SGMSPDVL 905

Query: 887  INPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELG 946
            INPHAFPSRMT+ M++ES+  K  +L GK  D + F                   +DE+ 
Sbjct: 906  INPHAFPSRMTVGMMMESICGKSAALRGKRFDGSAFVGEK---------------MDEVR 950

Query: 947  EMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITR 1006
            E++   GF Y G E++Y G  G     E+FIG VYYQ+L HMV+DK   R+ G +  +T+
Sbjct: 951  EVMDAHGFEYSGKEIMYDGRTGKSFPVEVFIGVVYYQKLHHMVADKIHARARGQVQMLTK 1010

Query: 1007 QPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIH 1066
            QP +GR RGGG+RFGEMERD L+A+GA+ +L DRL   SD     VC  CG V      H
Sbjct: 1011 QPTEGRARGGGLRFGEMERDCLIAYGASMILKDRLLDESDKSDIFVCERCGLVA----YH 1066

Query: 1067 PQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
              K+              +K  C  C     + +V++ Y F+ L  E+ ++N+
Sbjct: 1067 DVKQ--------------RKYVCRVCGDKAKVSSVSVAYAFKLLLQEMQSLNV 1105


>gi|190407518|gb|EDV10785.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Saccharomyces
            cerevisiae RM11-1a]
          Length = 881

 Score =  360 bits (925), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 285/937 (30%), Positives = 431/937 (45%), Gaps = 120/937 (12%)

Query: 233  LAEVQDLSLTTRLQCLQHIGEHFQPV----IDGLQSESYYAVAETVIRDYIFVHLNDNND 288
            L E   L + T+ Q L++IG   + +    +  LQ E   A+A TVI  ++ V   D  +
Sbjct: 19   LEESSKLDIYTQQQALEYIGAKVKTMRRQKLTILQ-EGIEAIATTVIA-HLTVEALDFRE 76

Query: 289  KFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQ 348
            K   +  M +++   + +  + D+ D + N+ + L G LI++  ++  + +    K  I 
Sbjct: 77   KALYIAMMTRRVVMAMYNPKMIDDRDYVGNKRLELAGQLISLLFEDLFKKFNNDFKLSID 136

Query: 349  DEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQ 408
              ++   +  ++  L +I        S  I + +   + TG  + +      +RAG T  
Sbjct: 137  KVLKKPNRAMEYDALLSINV-----HSNNITSGLNRAISTGNWSLKRFK--MERAGVTHV 189

Query: 409  AERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMT 467
              RL+++  +     +   + F   R  S  R L P  +G LC   TP+GE CGL+ ++ 
Sbjct: 190  LSRLSYISALGMMTRI--SSQFEKSRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNLA 247

Query: 468  STCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAV-LSVLLDGRVV 526
                + +         D  +     L  ++GV  I     L+ S    +   V L+G ++
Sbjct: 248  LMTHITT---------DDEEEPIKKLCYVLGVEDI----TLIDSASLHLNYGVYLNGTLI 294

Query: 527  GVI--PSSEIEKVVAHLRRL-KVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVR 583
            G I  P+  + +   HLRR  KVS            ++ +        +++ T   +  R
Sbjct: 295  GSIRFPTKFVTQF-RHLRRTGKVSE-----------FISIYSNSHQMAVHIATDGGRICR 342

Query: 584  PVRNISLPSEESQNIELIGPFE-----QVFMEIRCPDGGDGGRRN----------AFPA- 627
            P+  +S      ++I L    +       F+++   +  D    N            P+ 
Sbjct: 343  PLIIVSDGQSRVKDIHLRKLLDGELDFDDFLKLGLVEYLDVNEENDSYIALYEKDIVPSM 402

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH EI P  +L  VA L PY  HNQSPRN YQC M KQ +G        R D  LY +  
Sbjct: 403  THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMTY 462

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
            PQ P+V+T T      D+ P G NA VAV++Y+GYD+EDA++LNKSS+DRG    +  + 
Sbjct: 463  PQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRRK 522

Query: 748  ETIDLSDDGNKVDR--GQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTT 805
             T  L    N      G      N D    H  +  DGL  VG  +  G+ Y +    T 
Sbjct: 523  TTTVLKRYANHTQDIIGGMRVDENGDPIWQHQSLGPDGLGEVGMKVQSGQIYINKSVPTN 582

Query: 806  NSWRTNSR---------------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPII 850
            ++   N                 +G E   +D V   M  S N      +  R  R P +
Sbjct: 583  SADAPNPNNVNVQTQYREAPVIYRGPEPSHIDQVM--MSVSDNDQALIKVLLRQNRRPEL 640

Query: 851  GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGG 910
            GDKFSSRHGQKGVC  +    DMPF+   G+ PD+I+NPH FPSRMT+  ++E ++ K G
Sbjct: 641  GDKFSSRHGQKGVCGIIVKQEDMPFND-QGIVPDIIMNPHGFPSRMTVGKMIELISGKAG 699

Query: 911  SLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTE 970
             L+G     T F        G    D SK LVD+        GFNY G ++LYSG+ G  
Sbjct: 700  VLNGTLEYGTCFG-------GSKLEDMSKILVDQ--------GFNYSGKDMLYSGITGEC 744

Query: 971  LTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLA 1030
            L   IF GP+YYQ+L+HMV DK   R+ G    +TRQP +GR R GG+R GEMERD ++A
Sbjct: 745  LQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIA 804

Query: 1031 HGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCH 1090
            +GA+ LL +RL   SD    DVC  CG +  + +                        C 
Sbjct: 805  YGASQLLLERLMISSDAFEVDVCDKCGLMGYSGW------------------------CT 840

Query: 1091 ACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
             C++++ +  + +PY  + L  EL +MNI   L+L D
Sbjct: 841  TCKSAENIIKMTIPYAAKLLFQELLSMNIAPRLRLED 877


>gi|84996571|ref|XP_953007.1| DNA-directed RNA polymerase II subunit [Theileria annulata strain
            Ankara]
 gi|65304003|emb|CAI76382.1| DNA-directed RNA polymerase II subunit, putative [Theileria annulata]
          Length = 1223

 Score =  360 bits (924), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 307/1157 (26%), Positives = 506/1157 (43%), Gaps = 150/1157 (12%)

Query: 39   RQAKISYTGKLMADVEFQY-------LDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQ 91
            R   ++Y  ++  D+E +        L      V  R    + P+M K+  C  +G + Q
Sbjct: 150  RLRNLTYASQVYIDIEQETYINEDGKLTQTDSTVYPRVPLCRMPMMHKSSYCWTRGLNDQ 209

Query: 92   KLVSLKEEAAEMGGYFILNGLERVFRS---------VILPKQNYPMSMVRS--SFRDRRE 140
             L  + E   + GGYF++NG ERV  +          +  K+N   S V    S  D  +
Sbjct: 210  DLSDIGECVFDQGGYFVVNGGERVLIAQERMANNFVYVFNKKNSKYSAVAQLRSQPDFIQ 269

Query: 141  GYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLE 200
            G T   ++I   +  ++ +   L Y+ +               +PV I+ +AL   +D +
Sbjct: 270  GVTSLTIMISNSQLTKNKMVAVLPYIRSD--------------IPVPILFRALGCISDRD 315

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLS-LTTRLQCLQHIGEHFQPVI 259
            I   +   + +              ++ + ++ + +++ S  T++ QCL  IG+   P +
Sbjct: 316  ILQRIVYDFSD--------------TQMLSLMRSSLEECSEYTSQEQCLDFIGKR-GPTV 360

Query: 260  DGLQSESYYAVAETVIRDY---IFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
              LQ E      ET+ R +   +   +   + K   L +M+ +L          D+ +  
Sbjct: 361  GALQEERLNFAKETLRRHFLPHVGTEVGSESKKCFYLGYMIHRLLLNQLGRINEDDREHF 420

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
              + + L G L+            +  ++ ++++I+ +G+ FD          + +    
Sbjct: 421  GKKRLDLAGSLMASSFGTLFRKLAKDVERFLKNQID-SGRSFDVAGAIKSCSQITQGLQY 479

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQ----------RAGYTVQAERLNFLRFISFFRAVHR 426
            Q+ T   + +   +        +            R G +    RL F  ++S  R ++ 
Sbjct: 480  QLLTGTHSKIIKIKFILLKKFTIWNWGRDKDGNVVRTGVSQVLNRLTFASYLSHLRRLNT 539

Query: 427  GASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFS 486
                 G +    R+L    WG +CP  TP+G+  GL+ ++   C ++             
Sbjct: 540  PLGREG-KMAKPRQLHNTHWGMICPAETPEGQAVGLVKNLALMCYIS-----------VG 587

Query: 487  KMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVI--PSSEIEKVVAHLRRL 544
             + ++IL  L+  GM  SL ++        + + L+G  VGV   P S +  ++   R+ 
Sbjct: 588  SLSSTILDFLLEFGM-DSLDEISPILIKDRVKIFLNGTWVGVFNQPDSLVNVLLELRRKG 646

Query: 545  KVSAASVIPDDLEVGYVPL--SLGGAYPGLYLFTS-----PPKFVRPVRNISLPSE---E 594
             +S+ + I  D+    + +    G +   LY+  +       +    + N  L      E
Sbjct: 647  NISSETSIVRDIMSNEIKIFTDSGRSMRPLYIVENNRLLITKRHANMIENNQLTWSGLME 706

Query: 595  SQNIELIG-PFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQS 653
            +  +E I    E++ M    PD            TH EIHP+ +L V A++ P+ D NQS
Sbjct: 707  TGVVEYIDCEEEEICMIAMFPDDLVNNNNYCNSYTHCEIHPSMILGVCASIIPFPDQNQS 766

Query: 654  PRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAI 713
            PRN YQ  M KQ MG        R D   + L  PQ P+V T +       E P G N+I
Sbjct: 767  PRNTYQSAMGKQAMGVYSTNYNLRMDTLSHVLYYPQKPLVCTRSMEFLRFRELPAGINSI 826

Query: 714  VAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV--------DRGQKL 765
            VA++ YTGY+ ED++I+N+SS+DRG+      +T + +    G+ V          G+ L
Sbjct: 827  VAIMCYTGYNQEDSLIMNQSSIDRGLFRSVFNRTYSSEEKYLGSTVIESFTKPTSTGKFL 886

Query: 766  FRRNKDAKSLHSVIDSDGLPYVGQ-------MIHPGEPYCSIYDKTTNSWRTNSR----- 813
              +  D    +S +D+DGL   G        +I    P  S  +    +   N R     
Sbjct: 887  NLKRGD----YSKLDNDGLIEPGSRVLGDDIIIGRSSPVESDPNNPQYTPEMNLRMDCSC 942

Query: 814  --KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDI 871
              + +E+  VD V + + N     +   ++ R  R P IGDKF+SRHGQKG     +   
Sbjct: 943  CLRPNENGVVDNVLLTVNNKG--CKFTKVKVRSIRVPQIGDKFASRHGQKGTIGMTFRME 1000

Query: 872  DMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNG 931
            D+PF+   G+ PD+I+NPHA PSRMTI  L+E +  K GSL G   DATPF         
Sbjct: 1001 DLPFT-CDGIVPDIIMNPHAVPSRMTIGHLIECLLGKVGSLVGMEGDATPF--------- 1050

Query: 932  DTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSD 991
                  SK  ++++   L  C ++ +G E  ++G  G  +  +IF+GP YYQRL+HMV D
Sbjct: 1051 ------SKMTLEQISNRLFKCRYSRYGNEAFHNGFTGNLMASKIFVGPTYYQRLKHMVED 1104

Query: 992  KFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVAD 1051
            K   R+ G +  +TRQP +GR R GG+RFGEMERD +++HGAA +L +RL   SD +   
Sbjct: 1105 KIHARARGPVTMLTRQPTEGRSREGGLRFGEMERDCMISHGAAKMLKERLFDQSDAYRVH 1164

Query: 1052 VCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLA 1111
            VC+ CG +  A   +                      C AC     +  V +PY  + L 
Sbjct: 1165 VCNFCGLLSVANLNN------------------SSFQCTACDNKTQISQVTIPYACKLLL 1206

Query: 1112 AELAAMNIKITLQLGDG 1128
             EL AM I   L L + 
Sbjct: 1207 QELMAMAIYPKLILTEA 1223


>gi|312381454|gb|EFR27200.1| hypothetical protein AND_06234 [Anopheles darlingi]
          Length = 1954

 Score =  360 bits (924), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 318/1106 (28%), Positives = 502/1106 (45%), Gaps = 158/1106 (14%)

Query: 34   MFDHCRQAKISYTGKLMADV-EFQYLDAGSPV--VRERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+ + + ++   PV    ++   G+ P+ML++  C L     
Sbjct: 109  MPNEARLRNLTYSAPLYVDITKTKIVEGQDPVETQHQKTFIGKIPIMLRSTYCLLSQLTD 168

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    ++   S +D +  Y  K  +  
Sbjct: 169  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKYAY--KTEIRS 223

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  +  G   +     G+  +         +P+ IV +AL    D +
Sbjct: 224  CLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRVIAILPYVKQEIPIMIVFRALGFVADRD 283

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAE---VQDLSLTTRLQCLQHIGEHFQP 257
            I  H+   +D+           P + E VK  L E   VQ+ ++      L  IG   + 
Sbjct: 284  ILEHIIYDFDD-----------PEMMEMVKPSLDEAFVVQEQNV-----ALNFIGA--RG 325

Query: 258  VIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNP 313
               G+  +     A+ +++  +  H+  ++     K   L +M+ +L          D+ 
Sbjct: 326  ARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDR 385

Query: 314  DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKN 373
            D   N+ + L G L+    +   ++ +++ +   Q  I+  GK F+   LA IK      
Sbjct: 386  DHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDR-GKDFNL-ELA-IK------ 436

Query: 374  PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
             +K I   +   L TG    Q     Q RAG +    RL F   +S  R V+      G 
Sbjct: 437  -TKIITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG- 493

Query: 434  RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
            +    R+L    WG +CP  TP+G   GL+ ++     ++                + IL
Sbjct: 494  KLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPIL 542

Query: 494  RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VS 547
              L    M  +L ++  S       + ++G  VG+    + E+++A LR+L+      VS
Sbjct: 543  EFLEEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVS 599

Query: 548  AASVIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------------RNISLPSE 593
              S+I D  D E+               ++T   +  RP+             +I +  +
Sbjct: 600  EVSMIRDIRDREI--------------RIYTDAGRICRPLLIVEGGSLLLRKHHIDMLKD 645

Query: 594  ESQN------------IELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGML 638
               N            +E I   E+   M    P      +  A+  T  H EIHP  +L
Sbjct: 646  RDYNNYGWQVLVASGVVEYIDTLEEETVMIAMTPYDLKQDKEYAYCTTYTHCEIHPAMIL 705

Query: 639  SVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTY 698
             V A++ P+ DHNQSPRN YQ  M KQ MG  +     R D   + L  P  P+V T + 
Sbjct: 706  GVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSM 765

Query: 699  TKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD-GN 757
                  E P G N+IVA+L YTGY+ ED++ILN S+V+RG      Y++     S   G+
Sbjct: 766  EYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKRIGD 825

Query: 758  KVDRGQKLFRRNKDA--KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKT 804
            + ++ +K  R+       +L+  +D DG+             +G+ I   E    + D T
Sbjct: 826  QEEQFEKPNRQTCQGMRNALYDKLDEDGIIAPGLRVSGDDVVIGKTITLPETDDDL-DGT 884

Query: 805  TNSWRTNSRKGS------ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRH 858
            T   R   R GS      E+  VD V + + NS+   +   IR R  R P IGDKF+SRH
Sbjct: 885  TK--RFTKRDGSTFLRNSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRH 940

Query: 859  GQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMD 918
            GQKG C   +   DMPF+   G+ PD+IINPHA PSRMTI  L+E +  K GS  G+  D
Sbjct: 941  GQKGTCGIQYRQEDMPFT-CEGITPDIIINPHAIPSRMTIGHLIECIQGKLGSNKGEIGD 999

Query: 919  ATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIG 978
            ATPF ++V               V ++   L+  G++  G EV+Y+G  G ++  ++F+G
Sbjct: 1000 ATPFNDAVN--------------VQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLG 1045

Query: 979  PVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLH 1038
            P YYQRL+HMV DK   R+ G +  + RQP++GR R GG+RFGEMERD  ++HGAA  L 
Sbjct: 1046 PTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLR 1105

Query: 1039 DRLHTCSDYHVADVCSLCGSVLTATF 1064
            +RL   SD +   VC+ CG +  A  
Sbjct: 1106 ERLFEVSDPYRIHVCNFCGLIAIANL 1131


>gi|126465702|ref|YP_001040811.1| DNA-directed RNA polymerase subunit B [Staphylothermus marinus F1]
 gi|126014525|gb|ABN69903.1| DNA-directed RNA polymerase, subunit B' / DNA-directed RNA
            polymerase, subunit B' [Staphylothermus marinus F1]
          Length = 1156

 Score =  360 bits (924), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 320/1167 (27%), Positives = 515/1167 (44%), Gaps = 180/1167 (15%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR    +Y   +   V  Q  D       +       PVMLK++   L    +++LV++ 
Sbjct: 88   CRLRNFTYAVPIYLKVALQ--DETGIYKEQEIKLMDLPVMLKSKIDPLSKMTAEELVAIG 145

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            E+  + GGYFI+NG E+V    ++ +++   + +   +       T  A VI   +  +S
Sbjct: 146  EDPKDPGGYFIINGSEKV----LVAQEDLASNNILVDYASEGSSATHIAKVISVAKGRRS 201

Query: 158  SVTLK------LYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDE 211
             + ++       Y  L+G            + +PV I++ AL   ++LEI   ++   D 
Sbjct: 202  QLVIERRKDGIFYANLHG------------HRIPVVILMTALGLASELEITYAVSLDPDL 249

Query: 212  KYKKEKGAVGSPLVSERVKI-----------ILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            +       + +  V  R++I           I  E +  ++ T    L +IG     +  
Sbjct: 250  QTYLLPSIMQAQSVFPRLEIPENASPEEQKRIEEEHRRKTIET---ALDYIGAR---IAI 303

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDN------NDKFNLLIFMLQKLFSLVDHTSVSDNPD 314
            G   E     A+  + +Y+  H+           K   +  M+ KL  L+      D+ D
Sbjct: 304  GRPREERIRRAQRALDEYLLPHIGTEPTPEVRRKKAYFIGQMVNKLIELIVDRRKPDDKD 363

Query: 315  SLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNP 374
              +N+ + L G L+   ++  L  +                       +  +K  +E++ 
Sbjct: 364  HYRNKRLKLAGDLLAQLVRHNLVTYF----------------------IREVKSSIERSY 401

Query: 375  SKQIGTSIETMLKTGRL------ATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGA 428
            SK     ++ ++K G L      A  TG     + G +   +R N +  +S  R V    
Sbjct: 402  SKYGRLDLKLVIKPGMLTDRILHAMATGNWPGGKTGVSQLLDRTNLMSTLSHLRRV---- 457

Query: 429  SFAGLRTT----SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVAS---------- 474
              + L+ T      R+L P  WG +CP  TP+G   GL+ ++     V+           
Sbjct: 458  -VSPLKRTQPHFEARELHPTQWGRMCPFETPEGANIGLVKNLALMAHVSVGVPEEHIEPI 516

Query: 475  YYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPS-SE 533
             Y   G +++  ++   I + +   G +   P            V L+GR++G  P   +
Sbjct: 517  LYRKLG-VKNLDEIIEEIKKAI--TGEVEEYPDYTSWS-----RVYLNGRLIGYHPDGKK 568

Query: 534  IEKVVAHLRR-----LKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNI 588
            + + + +LRR     ++V+ A +  + L   Y+    G     L +  +    ++P    
Sbjct: 569  LAQEIRNLRRRGKISVEVNVAHIRDEHLNEVYINTDAGRIRRPLLVVENGKLKLKPEHIA 628

Query: 589  SLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFP------ATHEEIHPTGMLSVVA 642
             L S E +  +L+   ++  +E    D  +       P       TH EI    ++ + A
Sbjct: 629  KLKSGEWKFSDLV---KRGIIEYLDADEEEEAYIALTPDQITPEHTHMEIWTPAIMGITA 685

Query: 643  NLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYG 702
            ++ PY++HNQSPRN Y+  MAKQ++G      + R D + + L  PQ P+V+T      G
Sbjct: 686  SIIPYAEHNQSPRNSYEAAMAKQSLGLYSANFQQRMDTRGHLLHYPQKPLVQTRAMEVNG 745

Query: 703  IDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVDR 761
             +E P G N +VAV+++TGY++EDA+I+NKSSVDRG+     ++   T++    G + DR
Sbjct: 746  YNERPAGQNMVVAVMSFTGYNIEDALIMNKSSVDRGLARSTFFRLYTTVEYRYPGGQEDR 805

Query: 762  ------GQKLFRRNKDAKSLHSVIDSDGL-----------PYVGQMIHP----GEPYCSI 800
                    + +R  K  + L    D DG+             +G++  P     + Y   
Sbjct: 806  IMIPPSNVRGYRGPKAYEKL----DEDGIVSPETPVKGGDVLIGKISPPRFMTAQEYTVG 861

Query: 801  YDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQ 860
               T       +R G + + VD V V      N  +   +R R  R P +GDKF+SRHGQ
Sbjct: 862  AGITRQDASVVTRHGEKGI-VDVVMVTTDIDGN--RLVKVRVRDLRIPELGDKFASRHGQ 918

Query: 861  KGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDAT 920
            KGV   L P  DMPF+   G+ PDLIINPHAFPSRMT+  L+ES+A K  +L G+F+DAT
Sbjct: 919  KGVIGLLVPQQDMPFTE-EGIVPDLIINPHAFPSRMTVGQLIESIAGKAAALEGRFVDAT 977

Query: 921  PFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPV 980
            PF                K  +D L   L+  G+   G E +Y G  G  L   IFIG V
Sbjct: 978  PF---------------HKEPIDNLMITLKRHGYPMSGYETMYDGRTGEILKTPIFIGIV 1022

Query: 981  YYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDR 1040
            YYQ+L HMV+DK   R+ G +  +TRQP +GR + GG+RFGEME D L+ HGA+ LL ++
Sbjct: 1023 YYQKLHHMVADKIHARARGPVQILTRQPTEGRAKEGGLRFGEMEVDCLVGHGASLLLKEQ 1082

Query: 1041 LHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMET 1100
            +   SD     VC LCG                 IG     R   K  C   +    ++ 
Sbjct: 1083 MLDKSDKTTIYVCELCG----------------HIGYYDRIRG--KYMCPIHKDKGKLKP 1124

Query: 1101 VAMPYVFRYLAAELAAMNIKITLQLGD 1127
            V + Y F+ L  EL +M I   L+L D
Sbjct: 1125 VEVSYAFKLLVQELMSMCIMPRLKLED 1151


>gi|399216338|emb|CCF73026.1| unnamed protein product [Babesia microti strain RI]
          Length = 1202

 Score =  360 bits (923), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 323/1154 (27%), Positives = 499/1154 (43%), Gaps = 151/1154 (13%)

Query: 39   RQAKISYTGKLMADVE---FQYLDA-GSPVVRERFNF-----GQFPVMLKTRRCHLQGAD 89
            R   ++Y+ ++  D++   + Y +A G   +++R ++     G+ P+MLK+  C  +   
Sbjct: 132  RLRNLTYSSQIYVDIDQEIYIYDEAKGQETLQDRTSYPRISLGKIPMMLKSMYCWTRNVS 191

Query: 90   SQKLVSLKEEAAEMGGYFILNGLERV----------FRSVILPKQNYPMSMVRSSFRDRR 139
               L  + E   + GGYFI+ G ERV          F  V   KQ    S V +  R + 
Sbjct: 192  EDDLADIGECPYDQGGYFIVGGGERVLIAQERMANNFIYVFKKKQPSKFSWV-AEIRSQM 250

Query: 140  EGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDL 199
            E Y+          K + +    +        +L   L      +PV I+ +AL    D 
Sbjct: 251  E-YSQGTSAFSIKMKAKQATANVIGNRFRSYDQLVATLPYIRTDIPVAILFRALGCVADK 309

Query: 200  EIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQD-LSLTTRLQCLQHIGEHFQPV 258
            +I   +   +D+K              + + ++   ++D L  TT+  CL  IG+    V
Sbjct: 310  DILQRIAYDFDDK--------------QMLNLMKPTLEDALDFTTQDACLDFIGKRGPTV 355

Query: 259  IDGLQSESYYAVAETVIRDYIFVH----LNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPD 314
              G   +     A+ ++R  +  H    L   + K   + +M+ +L          D+ D
Sbjct: 356  --GAPRDKRIQYAKDLLRKEVLPHVGTELGVESKKCYFIGYMVHRLLLAKLGRINQDDRD 413

Query: 315  SLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNP 374
                + + + G L+            +  K+++Q +I+  G+ FD               
Sbjct: 414  HFGKKRLDMAGPLMASSFGTLFRKMAKDAKRILQHQIDC-GRTFDVAGAIR--------S 464

Query: 375  SKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLR 434
            + QI   ++  L TG         +  R G +    RL F   +S  R ++      G +
Sbjct: 465  ASQITQGLQYQLLTGNWGKDRDGKVV-RTGVSQVLNRLTFASCLSHLRRLNTPLGREG-K 522

Query: 435  TTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILR 494
                R+L    WG +CP  TP+G+  GL+ ++   C ++                ++I  
Sbjct: 523  MAKPRQLHNTHWGMICPAETPEGQAVGLVKNLALMCSIS-----------VGGASSTICE 571

Query: 495  VLIGVGMIPSLPKLVKSGPPAVLS----VLLDGRVVGVIPSSE--IEKVVAHLRRLKVSA 548
            +L  +GM  SL ++    PP V+     V ++G  +G    ++  +  ++   RR  +S 
Sbjct: 572  LLTELGM-DSLDEV----PPEVIKDRVKVFINGTWIGCFDEADNLVNTLLHFRRRCDISH 626

Query: 549  ASVIPDDLEVGYVPL--SLGGAYPGLYLFTSPPKF------VRPVRNISLPSE------- 593
             + I  ++    V +    G A   L +     +       V  +R+ S  +E       
Sbjct: 627  ETSIIKEIVSKEVKIFTDAGRAMRPLLVVHDGNRLALKRSHVEKIRDGSYINECSSENTS 686

Query: 594  ------ESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPA-THEEIHPTGMLSVVANLTP 646
                  ES  +E I   E+    +           N     TH EIHP  +L V A++ P
Sbjct: 687  AWNWLVESGVVEYIDCEEEEMCMVSMFVQDLHSNSNYCSTYTHCEIHPCMILGVCASIIP 746

Query: 647  YSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEY 706
            + D NQSPRN YQ  M KQ MG        R D   + L  PQ P+V T         E 
Sbjct: 747  FPDQNQSPRNTYQSAMGKQAMGVYSSNFNLRMDTLSHLLYYPQKPLVCTRAMEFLRFREL 806

Query: 707  PTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGN----KVDRG 762
            P G NAIVA++ Y+GY+ ED++I+N+SS+DRG+      +T   +    G+    K +R 
Sbjct: 807  PAGINAIVAIMCYSGYNQEDSLIMNQSSIDRGLFRSVFNRTYVSEEKQQGSVTIEKFERP 866

Query: 763  QKLFRRNKDAKSLHSVIDSDGLPYVGQM----------IHPGEPYCSIYDKTTNSWRTNS 812
               F      +  +S +DSDGL   G            I P  P   +  K   S     
Sbjct: 867  NPQFVAGM-KRGDYSKLDSDGLVEPGSRVLGDDVIIGRISPTLPNQDVAPKRDCSL---C 922

Query: 813  RKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDID 872
             + SE+  V  V + + NSK   +   ++ R  R P IGDKF+SRHGQKG     +   D
Sbjct: 923  LRRSENGVVHSVLLSV-NSKG-SRFCKVKVRSVRIPQIGDKFASRHGQKGTIGITYRMED 980

Query: 873  MPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGD 932
            MPF+   G+ PD+I+NPHA PSRMTI  L+E +  K G++ G   DATPF          
Sbjct: 981  MPFT-CQGIVPDIIMNPHAVPSRMTIGHLVECLVGKVGAIGGLEGDATPF---------- 1029

Query: 933  TGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDK 992
                 S   V E+   L   G+  HG E LY+G  G  L  +IFIGP YYQRL+HMV DK
Sbjct: 1030 -----SSLTVKEIASKLHELGYERHGNEALYNGYTGRLLKSKIFIGPTYYQRLKHMVEDK 1084

Query: 993  FQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADV 1052
               R+ G +  +TRQP +GR R GG+RFGEMERD +++HGAA +L +RL   SD +   V
Sbjct: 1085 IHARARGPVTMLTRQPTEGRSRDGGLRFGEMERDCMISHGAAKVLKERLFDQSDAYRVHV 1144

Query: 1053 CSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAA 1112
            C +CG ++ A       R   E              C AC     +  V++PY  + L  
Sbjct: 1145 CDMCGLIVIADL----NRGSFE--------------CSACDNKTNISQVSIPYACKLLLQ 1186

Query: 1113 ELAAMNIKITLQLG 1126
            EL +M I   L LG
Sbjct: 1187 ELMSMAIYPKLTLG 1200


>gi|427798029|gb|JAA64466.1| Putative rna polymerase i second largest subunit, partial
            [Rhipicephalus pulchellus]
          Length = 1149

 Score =  360 bits (923), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 306/1085 (28%), Positives = 488/1085 (44%), Gaps = 116/1085 (10%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    L      V    ++   G+ P+ML++  C L     
Sbjct: 109  MPNEARLRNLTYSAPLYVDITKTVLKENEEAVETQHQKTFIGKIPIMLRSTYCLLNNLTD 168

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V     L  Q    +     F+ +   Y  KA    
Sbjct: 169  RDLSELNECPLDPGGYFIINGSEKV-----LIAQEKMATNTVYVFQMKDSKYAYKAECRS 223

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  L  G   +     G+  +         +P+ IV +AL    D +
Sbjct: 224  CLEHSSRPTSTLWVNMLARGGQGVRKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 283

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
            I  H+   +++           P + E VK  L E     +  +   L  IG   +    
Sbjct: 284  ILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGARP 328

Query: 261  GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G+  E     ++ +++  +  H+  ++     K   L +M+ +L          D+ D  
Sbjct: 329  GVTKEKRIKYSKEILQKEMLPHVGVSDFCETKKAYYLGYMVHRLLLAALGRRELDDRDHY 388

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +    + L K  ++   +  + GK F+   LA IK         
Sbjct: 389  GNKRLDLAGPLMAFLFRGLFRN-LTKEVRMYAQKFIDRGKDFNL-ELA-IKT------XX 439

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   +   L TG    Q     Q RAG +    RL +   +S  R V+      G +  
Sbjct: 440  XITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTYASTLSHLRRVNSPIGRDG-KLA 497

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG +CP  TP+G   GL+ ++     + SY              + IL  L
Sbjct: 498  KPRQLHNTLWGMICPAETPEGHAVGLVKNLA----LMSYIS-------VGSQPSPILEFL 546

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
                M  +L ++  S       + ++G  VG+    + ++++  LR+L+      VS  S
Sbjct: 547  EEWSM-ENLEEIAPSAIAEATKIFVNGCWVGI--HRDPDQLMNTLRKLRRQMDIIVSEVS 603

Query: 551  VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNI-SLPSEESQN-----------I 598
            ++ D  +      +  G      L     K +   R+I +L   E  N           +
Sbjct: 604  MVRDIRDREIRIYTDAGRICRPLLIVEDQKLLLKRRHIDNLKDREYNNYSWQDLVASGVV 663

Query: 599  ELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656
            E I   E+  V + +   D  D G       TH EIHP+ +L V A++ P+ DHNQSPRN
Sbjct: 664  EYIDTLEEETVMLSMTPDDLQDKGLAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRN 723

Query: 657  MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
             YQ  M KQ MG  +     R D   + L  P  P+  T +       E P G N+IVA+
Sbjct: 724  TYQSAMGKQAMGIYITNFHVRMDTLAHVLYYPHKPLTTTRSMEYLRFRELPAGINSIVAI 783

Query: 717  LAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVDRGQKLFRRNKDA--K 773
            ++YTGY+ ED++I+N S+VDRG      Y++ +  +    G++ ++ +K  R        
Sbjct: 784  MSYTGYNQEDSIIVNASAVDRGFFRSVFYRSYKDSECKRVGDQEEQFEKPTRETCQGMRN 843

Query: 774  SLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGSESV 819
            +++  +D DG+   G  +   +       ++ +   +   TN R          + SE+ 
Sbjct: 844  AIYDKLDDDGIIAPGTRVSGDDVIIGKTITLPENDDDLESTNRRFTKRDASTFLRNSETG 903

Query: 820  FVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVT 879
             VD V + + N++   +   IR R  R P IGDKF+SRHGQKG C   +   DMPF+   
Sbjct: 904  IVDQVMLTV-NAEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGITYRQEDMPFTA-E 960

Query: 880  GMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESK 939
            G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF +SV             
Sbjct: 961  GLTPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDSVN------------ 1008

Query: 940  SLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTG 999
              V ++  +L+  G++  G EV+++G  G ++  +IF+GP YYQRL+HMV DK   R+ G
Sbjct: 1009 --VQKISNLLQEYGYHLRGNEVMFNGHTGRKVNAQIFLGPTYYQRLKHMVDDKIHSRARG 1066

Query: 1000 TMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSV 1059
             +  + RQP++GR R GG+RFGEMERD  ++HGAA  L +RL   SD + A +C+LCG +
Sbjct: 1067 PVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRAHICNLCGLL 1126

Query: 1060 LTATF 1064
              A  
Sbjct: 1127 AIANL 1131


>gi|374633176|ref|ZP_09705543.1| DNA-directed RNA polymerase subunit B [Metallosphaera yellowstonensis
            MK1]
 gi|373524660|gb|EHP69537.1| DNA-directed RNA polymerase subunit B [Metallosphaera yellowstonensis
            MK1]
          Length = 1124

 Score =  360 bits (923), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 324/1203 (26%), Positives = 515/1203 (42%), Gaps = 195/1203 (16%)

Query: 13   RELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRE----- 67
            R LVR H++SF+  +   L E+ D   +      G     ++   +  G P VRE     
Sbjct: 18   RGLVRQHLDSFNDFVRNKLQEIIDEQGEITTEIPG---LKIKLGKIRVGKPRVREADKGD 74

Query: 68   -----------------------------------RFNFGQFPVMLKTRRCHLQGADSQK 92
                                                 + G  P+MLK+          +K
Sbjct: 75   REITPMEARLRNLTYSAPIYLTMIPIENNIEGEPIEVHIGDIPIMLKSSADPTSELSPEK 134

Query: 93   LVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCV 152
            LV + E+  + GGYFI+NG ERV    I+ +++   + V           T  A +I   
Sbjct: 135  LVEIGEDPKDPGGYFIINGSERV----IVTQEDLATNRVLVDVGKSGSNITHTAKIISST 190

Query: 153  RKDQSSVTLKLYYLLNGSVRLGF-WLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDE 211
               +  +T++   L + ++ + F  + G+   +P  I+++AL  + D ++        D 
Sbjct: 191  AGYRVPITIE--RLKDSTIHVSFPAMPGR---IPFVILMRALGISTDRDV--TYAVSLDP 243

Query: 212  KYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVA 271
            + + E              ++ +  Q  S+ T+   L  IG     V  G + E     A
Sbjct: 244  EIQNE--------------LLPSIEQASSIATKEDALDFIGNR---VAIGQKREMRIQKA 286

Query: 272  ETVIRDYIFVHL----NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
            E ++  Y   HL    +D   K   L F + KL  L       D+ D   N+ + L G L
Sbjct: 287  EQILDKYFLPHLGTSPSDRMAKAYYLAFAVSKLIELYLGRREPDDKDHYANKRLKLAGDL 346

Query: 328  ITIYLKEKLEDWLRKGKKLIQ--DEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
                 +   + ++   K L+   ++ +  G++     L     + E+             
Sbjct: 347  FASLFRVAFKAFV---KDLVYQLEKSKVRGRRLALNALVRPDIISERI------------ 391

Query: 386  LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFA-GLRTTSVRKLLPE 444
                R A  TG  +  R G +   +R N+L  +S  R V   +S A G      R L   
Sbjct: 392  ----RHALATGNWVGGRTGVSQLLDRTNWLSMLSHLRRVV--SSLARGQPNFEARDLHGT 445

Query: 445  SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP- 503
             WG +CP  TP+G   GL+ ++    +++   + R           ++ + L  +G+ P 
Sbjct: 446  QWGRMCPFETPEGPNSGLVKNIALLAQISVGINER-----------NVEKTLYNLGVTPV 494

Query: 504  -SLPKLVKSGP-----PAVLSVLLDGRVVGVIPS-SEIEKVVAHLRRL-----KVSAASV 551
              + + V++G           V+L+G++VG  P   E+ + +   RR      +V+ + +
Sbjct: 495  DEIIRKVEAGEDVSEYQGWSRVILNGKLVGYYPDGEELAQKIRDRRREGELSDEVNVSHM 554

Query: 552  IPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIG-PFEQVFME 610
            + +  +  Y+    G     L +  +    V          E+ +N++     F+ +  E
Sbjct: 555  VTESFDEVYINCDGGRVRRPLVVVRNGKPLV--------AKEDIENLKKGKITFDTLVRE 606

Query: 611  IRCPDGGDGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQC 660
             +          NA  A          TH EI    +L + A++ PY +HNQSPRN YQ 
Sbjct: 607  GKIEFLDAEEEENALIAMEPKDVTKDHTHLEIWAPAVLGITASIIPYPEHNQSPRNTYQS 666

Query: 661  QMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYT 720
             MAKQ +G      + R D + + L  PQ PIV+T      G  E P G NAI A+++YT
Sbjct: 667  AMAKQALGLYAANYQIRTDTRAHLLHYPQKPIVQTRALEAIGYTERPAGNNAIFALMSYT 726

Query: 721  GYDMEDAMILNKSSVDRGMCHGQIY-------------QTETIDLSDDGNKVDRGQKLFR 767
            GY+MEDA+I+NKSSVDRGM     +             Q + I L + G +  +G++ +R
Sbjct: 727  GYNMEDAVIMNKSSVDRGMFRSTFFRLYSAEEIKYPGGQEDQILLPEAGVRGYKGKEYYR 786

Query: 768  RNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR---KGSESVFVDYV 824
              +    +   ++  G   +   + P        + + +  + ++    +  E   VD V
Sbjct: 787  LLESNGIVSPEVEVKGGDVLIGKVSPPRFLQEFKELSPDQSKRDTSIITRHGERGTVDLV 846

Query: 825  AVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPD 884
             V   +  N  +   +R R  R P IGDKF++RHGQKGV   L P +DMP++ V G+ PD
Sbjct: 847  LVTETSDGN--KLVKVRVRDLRIPEIGDKFATRHGQKGVIGMLIPQVDMPYT-VRGLVPD 903

Query: 885  LIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDE 944
            +I+NPHA PSRMT+  ++E++A K  +  G  +DATPF N                 ++E
Sbjct: 904  IILNPHALPSRMTVGQIMEAIAGKYVAASGHPIDATPFYNLP---------------IEE 948

Query: 945  LGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQI 1004
            + + L   G+   G EV+Y G  G ++   I  G VYYQ+L HMV+DK   R  G +  +
Sbjct: 949  IQKKLSELGYLSDGTEVVYDGRTGEKIKSRILFGIVYYQKLHHMVADKMHGRGRGPVQIL 1008

Query: 1005 TRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATF 1064
            TRQP +GR R GG+RFGEMERD L+ +GAA L+ DRL   SD  V  VC  CG V     
Sbjct: 1009 TRQPTEGRAREGGLRFGEMERDCLIGYGAAMLIKDRLLDNSDRAVVYVCDQCGYVGWYD- 1067

Query: 1065 IHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQ 1124
                             RA  K  C        +  V + Y F+ L  EL +M I   L 
Sbjct: 1068 -----------------RAKNKYVCPIHGDKTTLSPVTISYAFKLLLQELMSMVIAPRLV 1110

Query: 1125 LGD 1127
            LGD
Sbjct: 1111 LGD 1113


>gi|408402778|ref|YP_006860761.1| DNA-directed RNA polymerase subunit B [Candidatus Nitrososphaera
            gargensis Ga9.2]
 gi|300521500|gb|ADK25961.1| RNA polymerase B [Candidatus Nitrososphaera gargensis]
 gi|408363374|gb|AFU57104.1| DNA-directed RNA polymerase subunit B [Candidatus Nitrososphaera
            gargensis Ga9.2]
          Length = 1116

 Score =  359 bits (922), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 324/1200 (27%), Positives = 524/1200 (43%), Gaps = 209/1200 (17%)

Query: 15   LVRHHIESFDYMLDEGLSEMFDHCRQAKI--------------------------SYTGK 48
            + R H+ S++  ++ GL  + D   + +I                          S T  
Sbjct: 21   VARQHLNSYNEFMERGLQSIIDEVGEIEIETAEYPYKIKLGKIKLQQPRIMELDGSITHV 80

Query: 49   LMADVEFQYLDAGSPVVRE------------RF-NFGQFPVMLKTRRCHLQGADSQKLVS 95
               +   + L   SPV+ E            RF + G  PVM+K+  C L      KL+ 
Sbjct: 81   APMEARLRNLTYASPVMLECSVVEDGKILESRFIHIGDMPVMVKSNTCILHNLPESKLIE 140

Query: 96   LKEEAAEMGGYFILNGLERV--------FRSVILPKQNYPMSMV-RSSFRDRREGYTDKA 146
              E+  + GGYFI+NG ERV        +  +I+  +    +++ ++       GY  K 
Sbjct: 141  FGEDPRDPGGYFIINGSERVIVGLEDLSYNKIIVDAEEATGTLLYKAKVYSSIVGYRAKL 200

Query: 147  VVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLT 206
             ++  +R D S VT                + G    +P+  +++AL   +D +I + ++
Sbjct: 201  ELV--MRPDGSIVT---------------KIPGSPVDIPLITLIRALGLESDKDIADSVS 243

Query: 207  CCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSES 266
                           +  + + ++    +  D++  T    + +I +   P   G+  E 
Sbjct: 244  L--------------NETIQDELEPSFEKAGDVN--TSRDAIVYISKRIAP---GMLEEF 284

Query: 267  YYAVAETVIRDYIFVHLNDNNDKFNLLIFML----QKLFSLVDHTSVSDNPDSLQNQEIL 322
                AET++   +  H+  N D  +     L     KL  L      +D+ D   N+ I 
Sbjct: 285  QIKRAETLLDWGLLPHIGKNPDNRHEKALFLGEAASKLIELKLGWIDADDKDHYGNKVIK 344

Query: 323  LPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSI 382
              G ++    +    + +R  K     ++E +G+K        I  V        +   +
Sbjct: 345  FAGQMLADLFRTAFRNLIRDMKY----QLERSGQK------RGINAVAAAVRPGIVSDKL 394

Query: 383  ETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLL 442
               + TG          + R G T   +R N++  IS  R +    S +       R L 
Sbjct: 395  NNAIATGNWG-------RGRVGVTQLLDRTNYMSTISHLRRIQSPLSRSQ-PNFEARDLH 446

Query: 443  PESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMI 502
               +G +CP  TP+G  CGL+ ++  +  ++       N++  S   T  L  L    + 
Sbjct: 447  ATHFGRICPAETPEGSNCGLVKNLALSAIISV------NVQ--SAEVTEKLYELGVQNVE 498

Query: 503  PSLPKLVKSGPPAVLSVLLDGRVVGVIPSSE-IEKVVAHLRRLKVSAASVIPDDLEVGYV 561
             +   L +SG      V +DGR++G +   E +   +  +RR    +  + P    VG  
Sbjct: 499  DAREDLRESG----TRVFVDGRLIGYVEKGEHLSDTLRSMRR----SGKIHP---HVGIY 547

Query: 562  PLSLGG--AYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFME--------- 610
              S     A   LY+  +  + +RP+  +        N E+I    + F+          
Sbjct: 548  LYSSQNENATKRLYISCNAGRVLRPLVVLRDGKPLVTN-EVIEKVSKKFLSWNDLLYMGV 606

Query: 611  IRCPDGGDGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQC 660
            I   D  +    N + A          TH EI P+ +L V A++ PY +HNQSPRN Y+ 
Sbjct: 607  IELVDANE--EENCYVAIDPKKLEPKHTHLEIFPSAILGVGASIIPYPEHNQSPRNTYES 664

Query: 661  QMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYT 720
             MAKQ++GFS   +      + + +  PQTP+V T      G+++ PTG NA+VAVL + 
Sbjct: 665  AMAKQSLGFSTPLMNASTYVRQHFMLYPQTPVVSTKAINLLGLEDRPTGQNAVVAVLPFE 724

Query: 721  GYDMEDAMILNKSSVDRGMCHG---QIYQTET------------IDLSDDGNKVDRGQKL 765
            GY++EDA++ NKSSVDRG+      +IY+ E             +   D   +  RG+K 
Sbjct: 725  GYNIEDAVVFNKSSVDRGLGRTFFYRIYEAEAKQYPGGMKDNFELPQPDANIRGYRGEKA 784

Query: 766  FR-RNKDAKSLHSVIDSDGLPYVGQMIHPG--EPYCSIYDKTTNSWRTNSRKG---SESV 819
            +R   +D   +H  + + G   +G+   P   E Y     +    +R ++  G   SE+ 
Sbjct: 785  YRLLEQDGAIMHEAVVNGGDILIGRTSPPRFMEEYKEF--EVKGPYRRDTSVGVRPSENG 842

Query: 820  FVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVT 879
             VD V V    S    +   IR R  R P IGDKF+SRHGQKGV   L    D+P++   
Sbjct: 843  VVDTVIV--TQSVEGGKMYKIRVRDMRIPEIGDKFASRHGQKGVVGMLVNQEDVPYTE-D 899

Query: 880  GMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESK 939
            G+ PD++INPHAFPSRMT+   +ES+  K  SL G+ +D + F        G+ G     
Sbjct: 900  GVVPDIMINPHAFPSRMTVGQFMESLGGKAASLRGRIVDGSAFL-------GEKG----- 947

Query: 940  SLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTG 999
               D++   +   GF Y G E +Y G  G +   +++IG VYYQ+L HMV+DK   R+ G
Sbjct: 948  ---DDIKTAMEQYGFKYTGKETMYDGRTGRKFPADVYIGVVYYQKLHHMVADKIHSRARG 1004

Query: 1000 TMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSV 1059
             +  +T+QP +GR RGGG+RFGEMERD L+A+GA+ +L DRL   SD    +VC  CG  
Sbjct: 1005 QVQMLTKQPTEGRARGGGLRFGEMERDCLIAYGASMMLKDRLLEESDKAEVNVCERCG-- 1062

Query: 1060 LTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
            L A +   Q+R I                C  C     + +V + Y F+ L  E+ ++N+
Sbjct: 1063 LLAYYDVKQRRYI----------------CRVCGEKAKISSVVIAYAFKLLLQEMMSLNV 1106


>gi|350539902|ref|NP_001234825.1| RNA polymerase II second largest subunit [Solanum lycopersicum]
 gi|68300807|gb|AAY89345.1| RNA polymerase II second largest subunit [Solanum lycopersicum]
          Length = 1205

 Score =  359 bits (922), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 322/1147 (28%), Positives = 500/1147 (43%), Gaps = 155/1147 (13%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPV--VRERFNF-----GQFPVMLKTRRCHLQGADS 90
             R   ++Y+  L  DV+ + +  G     V E   F     G+ P+ML++  C L     
Sbjct: 134  ARLRNLTYSSPLYVDVKKEVIKKGHDYEEVTENQEFTKVFIGKVPIMLRSSYCSLYNLSE 193

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V     L  Q    S     F+ R+         +R
Sbjct: 194  KDLTELGECPYDQGGYFIVNGSEKV-----LIAQEKMSSNHVYVFKKRQPNKYAYVAEVR 248

Query: 151  CVRKDQ----SSVTLKLYYLLNGSVRLGFWLQGK-EYL---LPVGIVLKALVDTNDLEIF 202
             + + Q    S + +++    N     G +++    Y+   +P+ +V +AL    D +I 
Sbjct: 249  SISEGQNKAPSGMFVRMLSRSNSKGAYGQYIRATLPYIRTEIPIIVVFRALGFVADKDIL 308

Query: 203  NHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGL 262
             H+  CYD              + E ++  L E     +  +   L +IG+    V  G 
Sbjct: 309  AHI--CYD---------FADTQMMELLRPSLEEA--FVIQNQQVALDYIGKRGSTV--GF 353

Query: 263  QSESYYAVAETVIRDYIFVHLND----NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQN 318
              E     A+ +++  +  H+         K     +++ +L   V      D+ D   N
Sbjct: 354  TREKRIKYAKEILQREMLPHVGTREYCETKKAYYFGYIIHRLLLCVLGRRPEDDRDHYAN 413

Query: 319  QEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQI 378
            + + L G L+    +       R  +  +Q  + + GK        N++  ++   +K I
Sbjct: 414  KRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCV-DGGKD------VNLQFAIK---AKTI 463

Query: 379  GTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSV 438
             + ++  L TG            RAG +    RL F   +S  R ++      G +    
Sbjct: 464  TSGLKYSLATGNWGQANAAG--TRAGVSQVLNRLTFASTLSHLRRLNSPIGREG-KLAKP 520

Query: 439  RKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIG 498
            R+L    WG +CP  TP+G+ CGL+ ++     + +   +   I +F +  ++     I 
Sbjct: 521  RQLHNSHWGMMCPAETPEGQACGLVKNLALMVYI-TVGSAANPILEFLEEWSTENFEEIS 579

Query: 499  VGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSE-IEKVVAHLRR-LKVSAASVIPDDL 556
              +IP   K           + ++G  VG+  + + + + +  LRR + V+    +  ++
Sbjct: 580  PAVIPQSTK-----------IFVNGCWVGIHRNPDLLVRTLRQLRRQVDVNTEVGVVRNI 628

Query: 557  EVGYVPLSLGGAYPGLYLFTSPPKFVRPVRN--ISLPSEESQN------------IELIG 602
             +  + L          LF    K +R  +N  I+L   ES              IE + 
Sbjct: 629  NLKELRLYTDYGRCSRPLFIVDKKRLRIKKNDIIALQMRESSEDSGWHDLVAKGFIEYVD 688

Query: 603  PFEQ----VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQSPRN 656
              E+    + M I            A+  T  H EIHP+ +L V A++ P+ DHNQSPRN
Sbjct: 689  TEEEETTMIAMTINDLTNSRVNPDEAYAETYTHCEIHPSLILGVCASIIPFPDHNQSPRN 748

Query: 657  MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
             YQ  M KQ MG  V   +FR D   Y L  PQ P+V T         + P G NAIVA+
Sbjct: 749  TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 808

Query: 717  LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETID-------LSDDGNKVDRGQKLFRRN 769
              Y+GY+ ED++I+N+SS+DRG+     +++   +       + +D  + DR   +  R+
Sbjct: 809  TCYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYRDEEKKMGTLVKEDFGRPDREHTMGMRH 868

Query: 770  KDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTT---------NSWR------TNSRK 814
             +   L    + DG    G  +   +    I  KTT          S R      + S +
Sbjct: 869  GNYDKL----EDDGFAPPGTRVSGDD---VIIGKTTPISQDEAQGQSARYTRKDHSTSLR 921

Query: 815  GSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMP 874
             SE+  VD V +   N+  L +   IR R  R P IGDKFSSRHGQKG     +   DMP
Sbjct: 922  HSETGIVDQVLL-TTNADGL-RFVKIRMRSVRIPQIGDKFSSRHGQKGTIGMTYTQEDMP 979

Query: 875  FSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTG 934
            +S   G+ PD+I+NPHA PSRMTI  L+E +  K  +  GK  DATPF +          
Sbjct: 980  WSA-EGITPDIIVNPHAIPSRMTIGQLVECIMGKVAAHIGKEGDATPFTDVT-------- 1030

Query: 935  TDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQ 994
                   VD +   L  CG+   G E +Y+G  G  L   IF+GP YYQRL+HMV DK  
Sbjct: 1031 -------VDSISRTLHNCGYQMRGFERMYNGHTGRVLPAMIFLGPTYYQRLKHMVDDKIH 1083

Query: 995  VRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCS 1054
             R  G +  +TRQP +GR R GG+RFGEMERD ++AHGAA+ L +RL   SD +   VC 
Sbjct: 1084 SRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCQ 1143

Query: 1055 LCGSVLTATFIHPQKRAIREIGGLPPARAPKKVT--CHACQTSKGMETVAMPYVFRYLAA 1112
             CG +  A                      KK++  C +C+       V +PY  + L  
Sbjct: 1144 QCGLMAIANL--------------------KKMSFECRSCRNKTDNVQVYIPYACKLLIQ 1183

Query: 1113 ELAAMNI 1119
            EL +M I
Sbjct: 1184 ELMSMAI 1190


>gi|297527625|ref|YP_003669649.1| DNA-directed RNA polymerase subunit B [Staphylothermus hellenicus DSM
            12710]
 gi|297256541|gb|ADI32750.1| DNA-directed RNA polymerase subunit B [Staphylothermus hellenicus DSM
            12710]
          Length = 1156

 Score =  359 bits (922), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 332/1226 (27%), Positives = 529/1226 (43%), Gaps = 213/1226 (17%)

Query: 15   LVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR-------- 66
            LVR H++S++  +D  L E+    ++ KIS + KL+      Y     P +R        
Sbjct: 26   LVRQHLDSYNRFIDHLLPEIISEHKEIKISGSRKLLIK---GYRIGNEPKIRTIEGFERT 82

Query: 67   --------------------------------ERFNFGQFPVMLKTRRCHLQGADSQKLV 94
                                            +       PVMLK++   L    +++L+
Sbjct: 83   VTPLECRLRNFTYAVPVYLRVALQDETGIYKEQEIKLMDLPVMLKSKIDPLSKMTAEELI 142

Query: 95   SLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRK 154
            ++ E+  + GGYFI+NG E+V    ++ +++   + +   +       T  A VI   + 
Sbjct: 143  AIGEDPKDPGGYFIINGSEKV----LVAQEDLASNNILIDYASEGSSATHIAKVISVAKG 198

Query: 155  DQSSVTLK------LYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
             +S + ++       Y  L+G            + +PV I++ AL   ++LEI + ++  
Sbjct: 199  RRSQLVIERRKDGIFYANLHG------------HRIPVVILMTALGLASELEITHAVSLD 246

Query: 209  YD-----------EKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQP 257
             D            +    K  +     SE  K I  E +  ++      L +IG     
Sbjct: 247  PDLQTYLLPSIMQAQSIFPKLEIPENASSEEQKRIEEEHRRKTIEI---ALDYIGAR--- 300

Query: 258  VIDGLQSESYYAVAETVIRDYIFVHLNDN------NDKFNLLIFMLQKLFSLVDHTSVSD 311
            +  G   E     A+  + +Y+  H+           K   +  M+ KL  L+      D
Sbjct: 301  IAIGRPREERIRRAQRALDEYLLPHIGTEPTPEVRRKKAYFIGQMVNKLIELIVGRRKPD 360

Query: 312  NPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVME 371
            + D  +N+ + L G L+   ++  L  +                       +  +K  +E
Sbjct: 361  DKDHYRNKRLKLAGDLLAQLIRHNLVTYF----------------------IREVKSSIE 398

Query: 372  KNPSKQIGTSIETMLKTGRL------ATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVH 425
            ++ SK     ++ ++K G L      A  TG     + G +   +R N +  +S  R V 
Sbjct: 399  RSYSKYGKLDLKLVIKPGMLTDRILHAMATGNWPGGKTGVSQLLDRTNLMSTLSHLRRV- 457

Query: 426  RGASFAGLRTT----SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGN 481
                 + L+ T      R+L P  WG +CP  TP+G   GL+ ++     V     S G 
Sbjct: 458  ----VSPLKRTQPHFEARELHPTQWGRMCPFETPEGANIGLVKNLALMAHV-----SVGV 508

Query: 482  IRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLS----------VLLDGRVVGVIPS 531
              +  +    IL   +GV  I  +   VK      L           V L+GR++G  P 
Sbjct: 509  PEEHIE---PILYEKLGVKSIEEIIGEVKKAVTGELEEYPDYTSWSRVYLNGRLIGYYPD 565

Query: 532  -SEIEKVVAHLRR-----LKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV 585
              ++ + + ++RR     ++V+ A +  + L   Y+    G     L +  +    ++P 
Sbjct: 566  GKKLAEEIRNMRRRGKISIEVNVAHIQDEHLNEVYINTDAGRIRRPLLVVENGKLKLKPE 625

Query: 586  RNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFP------ATHEEIHPTGMLS 639
                L S E +  +L+   ++  +E    D  +       P       TH EI    ++ 
Sbjct: 626  HIAKLKSGEWKFSDLV---KKGIIEYLDADEEEEAYIALTPDQITPEHTHMEIWTPAIMG 682

Query: 640  VVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYT 699
            + A++ PY++HNQSPRN Y+  MAKQ++G      + R D   + L  PQ P+V+T    
Sbjct: 683  ITASIIPYAEHNQSPRNSYEAAMAKQSLGLYSANFQRRMDTHGHLLHYPQKPLVQTRAME 742

Query: 700  KYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNK 758
              G +E P G N +VAV+++TGY++EDA+I+NKSSVDRG+     ++   T++    G +
Sbjct: 743  VNGYNERPAGQNMVVAVMSFTGYNIEDALIMNKSSVDRGLARSTFFRLYTTVEYRYPGGQ 802

Query: 759  VD------------RGQKLFRR-NKDAKSLHSVIDSDGLPYVGQMIHP----GEPYCSIY 801
             D            RG K + + ++D           G   +G++  P     + Y    
Sbjct: 803  EDKITIPPSNVRGYRGPKAYEKLDEDGIVSPETPVKGGDVLIGKISPPRFMTAQEYTVGA 862

Query: 802  DKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQK 861
              T       +R G + + VD V V      N   KA  R R  R P +GDKF+SRHGQK
Sbjct: 863  GITRQDASVVTRHGEKGI-VDLVMVTTDIDGNRLVKA--RVRDLRIPELGDKFASRHGQK 919

Query: 862  GVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATP 921
            GV   L P  DMPF+   G+ PDLIINPHAFPSRMT+  L+ES+A K  +L G+F+DATP
Sbjct: 920  GVIGLLVPQQDMPFTE-EGIVPDLIINPHAFPSRMTVGQLIESIAGKAAALEGRFVDATP 978

Query: 922  FANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVY 981
            F                K  ++ L   L+  G+   G E +Y G  G  L   IFIG VY
Sbjct: 979  F---------------HKEPIENLMITLKRHGYPMSGYETMYDGRTGEILKTPIFIGIVY 1023

Query: 982  YQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRL 1041
            YQ+L HMV+DK   R+ G +  +TRQP +GR + GG+RFGEME D L+ HGA+ LL +++
Sbjct: 1024 YQKLHHMVADKIHARARGPVQILTRQPTEGRAKEGGLRFGEMEVDCLVGHGASLLLKEQM 1083

Query: 1042 HTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETV 1101
               SD     VC LCG                 IG     R   K  C   +    ++ V
Sbjct: 1084 LDKSDKTTIYVCELCG----------------HIGYYDRIRG--KYVCPIHKDKGKLKPV 1125

Query: 1102 AMPYVFRYLAAELAAMNIKITLQLGD 1127
             + Y F+ L  EL +M I   L+L D
Sbjct: 1126 KVSYAFKLLVQELMSMCIMPRLKLED 1151


>gi|296809049|ref|XP_002844863.1| DNA-directed RNA polymerase III subunit RPC2 [Arthroderma otae CBS
            113480]
 gi|238844346|gb|EEQ34008.1| DNA-directed RNA polymerase III subunit RPC2 [Arthroderma otae CBS
            113480]
          Length = 1211

 Score =  359 bits (922), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 204/517 (39%), Positives = 280/517 (54%), Gaps = 59/517 (11%)

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH EI P  +L  VA L PY  HNQSPRN YQC M KQ +G        R D  LY +  
Sbjct: 729  THLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYAMVY 788

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
            PQ P+V+T T      D+ P G NA+VAV++Y+GYD+EDA++LNK SVDRG    Q+++ 
Sbjct: 789  PQKPMVKTRTIELTNYDKLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRK 848

Query: 748  ETIDLSDDGNKV-DRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN 806
             + +L    N   DR     R N  +   H ++D+DGL  VG+ + PGE Y  I  +T +
Sbjct: 849  YSANLKSYSNGTKDRLVGPTRENGVSIRKHGLLDNDGLAAVGEKVSPGEVY--INKETPD 906

Query: 807  SWRTNSRKGSES-------------VFVDYVAVD---MKNSKNLPQKANIRFRHTRNPII 850
            +  ++   GS++                DY  +D   +  ++   Q   ++ R TR P +
Sbjct: 907  NALSSGITGSDAGLPVKYNPTPQTYKLPDYSYIDKVMISTTEGESQLIKVQTRQTRRPEV 966

Query: 851  GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGG 910
            GDKFSSRHGQKGV   +    DMPF+  TG+ PD+I+NPH FPSRMT+  +LE VA K G
Sbjct: 967  GDKFSSRHGQKGVVGIIAEQADMPFTD-TGLVPDIIMNPHGFPSRMTVGKMLELVAGKAG 1025

Query: 911  SLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTE 970
             + G+F   TPF  S                V+E+  +L   GF+Y G + L SG+ G  
Sbjct: 1026 IISGQFGYGTPFGGSP---------------VEEMSAILVDHGFSYGGKDYLTSGITGEP 1070

Query: 971  LTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLA 1030
            LT  +F GP+YYQ+L+HMV DK   R+ G    +TRQP +GR R GG+R GEMERD L+A
Sbjct: 1071 LTYYVFTGPIYYQKLKHMVQDKMHSRARGPRATLTRQPTEGRSRDGGLRLGEMERDCLIA 1130

Query: 1031 HGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCH 1090
            +G + LL +RL   SD H  DVC  CG +  + +                        C 
Sbjct: 1131 YGTSQLLLERLMISSDRHEVDVCEGCGFMGYSGW------------------------CQ 1166

Query: 1091 ACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
             C+TS G+  + +PY  + L  EL +MN+   L+L D
Sbjct: 1167 RCKTSAGVVKMVIPYAAKLLVQELFSMNVVARLRLQD 1203



 Score = 91.7 bits (226), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 104/450 (23%), Positives = 192/450 (42%), Gaps = 62/450 (13%)

Query: 36  DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
           + CR   ++Y   ++ D  F+Y+     V R     G+ PVML++ +C L    ++++ +
Sbjct: 166 NECRLRDMTYAAPILVD--FEYVRGRQRVKRNGTAIGRMPVMLRSSKCVLSNKSAREMYT 223

Query: 96  LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
           L E   + GGYFI+NG E+    VIL ++    + V      ++E            RK 
Sbjct: 224 LHECPLDPGGYFIVNGTEK----VILVQEQLSKNRVIVETDSKKEIVQASVTSSSHERKS 279

Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
           +S + +K      G + L   +   +  +P+ I+LKA+   +D E+   L    D +Y+ 
Sbjct: 280 KSYIIMK-----KGRIYLRHNVLNDD--IPIVILLKAMGIQSDKEML-LLVAGVDLEYQ- 330

Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEH---------FQPVIDGLQSES 266
                      E   I   E   L + T+ Q L+++G           F P      +E+
Sbjct: 331 -----------EDFAINFEEAIKLGIFTQQQALEYLGARIKINRKASGFGPARRNYVAEA 379

Query: 267 YYAVAETVIRDYIFVHLNDNNDKFNLL--IFMLQKLFSLVDHTSVSDNPDSLQNQEILLP 324
             A++  +I     V + D N +   L   +M +++       S+ D+ D + N+ + L 
Sbjct: 380 IEAISSVIIS---HVQVQDMNFRPKALYVTYMARRVLMAKLDPSLVDDRDYVGNKRLELA 436

Query: 325 GHLITIYLKEKLEDWLRK---GKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTS 381
           G L+ +      ED  +K     K+  D++     + + F+   +  +   + ++ +  +
Sbjct: 437 GQLLALL----FEDLFKKFCFDIKMNIDKVLKKPVRTEAFDAYPVVAIHGNHITQGMNRA 492

Query: 382 IET---MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS- 437
           I T    LK  R+         +RAG T    RL+++  +     +   + F   R  S 
Sbjct: 493 IATGNWSLKRFRM---------ERAGVTHVLSRLSYIAALGMMTRI--SSQFEKTRKVSG 541

Query: 438 VRKLLPESWGFLCPVHTPDGEPCGLLNHMT 467
            R L P  +G LC   TP+GE CGL+ ++ 
Sbjct: 542 PRALQPSQFGMLCTSDTPEGEACGLVKNLA 571


>gi|146094444|ref|XP_001467277.1| putative DNA-directed RNA polymerase II subunit 2 [Leishmania
            infantum JPCM5]
 gi|398019887|ref|XP_003863107.1| DNA-directed RNA polymerase II subunit 2, putative [Leishmania
            donovani]
 gi|134071642|emb|CAM70332.1| putative DNA-directed RNA polymerase II subunit 2 [Leishmania
            infantum JPCM5]
 gi|322501339|emb|CBZ36417.1| DNA-directed RNA polymerase II subunit 2, putative [Leishmania
            donovani]
          Length = 1181

 Score =  359 bits (921), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 314/1143 (27%), Positives = 518/1143 (45%), Gaps = 138/1143 (12%)

Query: 36   DHCRQAKISY--TGKLMADVEFQYLDAGSP--VVRERFNFGQFPVMLKTRRCHLQGADSQ 91
            + CR   ++Y    ++   VE  +  A +P          G+ P+MLK+ RC+L G D  
Sbjct: 123  NECRLRDMTYDAQAQVTLGVELYHPHADTPHDTFLRNVELGRIPIMLKSMRCNLSGKDED 182

Query: 92   KLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC 151
            +L  L E   + GGYF++NG E+V    ++ ++    + V +  R +      K++V   
Sbjct: 183  ELPRLNECPHDQGGYFVINGTEKV----LIAQERQAANHVYTFSRQKGLLCEVKSIVEGS 238

Query: 152  VRKDQSSVTLKLYYLL---NGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
            + K ++   +  Y      +G   L   +   +  +P+ ++ +A+    D EI    T  
Sbjct: 239  LNKPRTLQIIMQYKNKGPGSGFENLMCRVAQMDETIPLFVLFRAMDMVADKEILQ--TVV 296

Query: 209  YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHF--QPVIDGLQSES 266
             D K            + E ++  +++   L + TR + L +IG     Q  +  LQ E 
Sbjct: 297  PDLK---------DTAMLELLRGSMSDASTLQIFTREEALGYIGRRLGKQDAMANLQRE- 346

Query: 267  YYAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEIL 322
                AE+++   +  H+    + N  K   + +M+ KL  +        + D L ++ I 
Sbjct: 347  ----AESLLMRDLLPHMGTDPSANRTKCLYMGYMVHKLLLVALGRHEETDRDFLGHKRID 402

Query: 323  LPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSI 382
            + G L+T+ L+  L    ++  K +QD   N    F F  + +  K++     + + T  
Sbjct: 403  VAGTLLTVQLQTFLAQVRKEMIKTLQDHAANPRGVFSFGRVIH-SKLITDGLRRCLATGN 461

Query: 383  ETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLL 442
               LKTG + T          G      RL +   +S  R +    + A  + T  R L 
Sbjct: 462  FGDLKTGNIKT----------GVAQTLNRLTYSSSLSNLRRIQNPIA-ASSKATRPRNLH 510

Query: 443  PESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMI 502
               WG++CPV TP+G   GLL ++   C +     SRG   D +++  ++   + G   I
Sbjct: 511  CTQWGYICPVETPEGGSIGLLKNVALMCLM-----SRGT--DHAEVVQAVQARIDGFRTI 563

Query: 503  PSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSA-----ASVIPD--D 555
                 L  +    V  V ++G ++GV      E+++  LR  + +       S++ D  D
Sbjct: 564  ----GLEDTADVRVARVFVNGTMIGV--DRNPERLLHDLRTRRRNGELSNEVSIVRDIRD 617

Query: 556  LEVGYVPLSLGGAYPGLYLFTSPPKFVRP--VRNISLPSEES---QNIELIGPFEQVFME 610
             E+  V    G     L++  +    +R   +RN+ L SE++   ++I      ++ ++E
Sbjct: 618  REI-RVFSDAGRCLRPLFVAENCHLKLRKSGMRNL-LVSEKAGGKKSISWNTALKKGYVE 675

Query: 611  -IRCPDGGD-------GGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQM 662
             I C +                +  +H E+ P+ +L + A++ PY +HNQSPRN YQ  M
Sbjct: 676  LIDCEEEDSLLIAMTPNEVEKNYYYSHCEMDPSMILGICASIIPYPNHNQSPRNTYQSAM 735

Query: 663  AKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGY 722
             KQ MG        R D   + L  PQ P+VRT   T    ++ P G NA+VA+  Y+GY
Sbjct: 736  GKQAMGIYASNFNMRMDTTAHVLFYPQKPLVRTKAMTYMHSNDLPAGHNAVVAISCYSGY 795

Query: 723  DMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKD----AKSLHSV 778
            + ED++I+++S+V+RG      +++      ++  K D  +     +++     ++ +S 
Sbjct: 796  NQEDSIIMSRSAVERGFFRSAFWRS--FKAKEERQKRDALETFENPDRELCRVKRADYSK 853

Query: 779  IDSDGLPYVGQMIHPGE---------PYCSIYDKTTNSWRTNSRKGS------ESVFVDY 823
            +D+DGL   G  +  G+         P   +   TT + +   R  S      E   VD 
Sbjct: 854  LDTDGLIKPGMRVLGGDVVVGKTIPLPEADLEKLTTGNTKITKRDASITSRTTEKGVVDK 913

Query: 824  VAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRP 883
            V + M N+    +   ++ R  + P IGDKF SRHGQKG     +   DMPF+   G+ P
Sbjct: 914  VMLTMNNNDRFTK---VKIRTIKIPNIGDKFCSRHGQKGTNGIQFRQEDMPFNR-DGIVP 969

Query: 884  DLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVD 943
            DLIINPHA PSRMT+A L+E++A K     G  + ATPF + V               VD
Sbjct: 970  DLIINPHAIPSRMTVAHLIETLAGKVACYKGGEVYATPFCSVV---------------VD 1014

Query: 944  ELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQ 1003
            + G+ L       +G E LY+G  G  L   IF GP +YQRL+H+  DK   R  G +  
Sbjct: 1015 DFGKALHALRSQRYGNECLYNGHTGLPLDHLIFFGPTFYQRLKHLSGDKIHARPRGPLQP 1074

Query: 1004 ITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTAT 1063
            + RQP +GR   GG+RFGEMERD +L++GA+  L +RL   SDY+   VC++CG++  A 
Sbjct: 1075 LVRQPTEGRAHEGGLRFGEMERDCMLSYGASQWLRERLFRVSDYYTVHVCNMCGTICVAD 1134

Query: 1064 FIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITL 1123
                                  +  C  C+    +  V MPY  + L  EL +M I   L
Sbjct: 1135 ------------------TKLNRYQCKGCENDTRISQVLMPYACKLLFQELMSMTILPRL 1176

Query: 1124 QLG 1126
              G
Sbjct: 1177 GTG 1179


>gi|308798899|ref|XP_003074229.1| DNA-directed RNA polymerase (ISS) [Ostreococcus tauri]
 gi|116000401|emb|CAL50081.1| DNA-directed RNA polymerase (ISS) [Ostreococcus tauri]
          Length = 999

 Score =  359 bits (921), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 317/1093 (29%), Positives = 480/1093 (43%), Gaps = 151/1093 (13%)

Query: 77   MLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRS---------VILPKQNYP 127
            ML++  C L G   ++L  L E   + GGYF++NG E+V  +          +  K+   
Sbjct: 1    MLRSDYCSLHGHTDKELTELGECPYDEGGYFVINGSEKVLIAQERMSTNHVYVFEKKQPS 60

Query: 128  MSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVG 187
              M ++  R + E  +  A    CV +   +V  K      G +R        +  +P+ 
Sbjct: 61   KFMWQAECRSQPERGSRGAS--SCVMRQMHAVGTKD---APGPIRCTLPYIRTD--IPIF 113

Query: 188  IVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQC 247
            +V +AL    D +I  H+  CYD     E   +  P + E   I   EV           
Sbjct: 114  VVFRALGFVADKDILEHI--CYDLA-DNEMMEMLRPSIEEAFVIQSQEV----------A 160

Query: 248  LQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNND----KFNLLIFMLQKLFSL 303
            L  IG+    V  G+  E     A+ +++  +  H+    D    K   L +M+ +L   
Sbjct: 161  LDFIGKRGSAV--GVSREKRIKYAKEILQKELLPHVGVREDCETKKAYFLGYMIHRLLLC 218

Query: 304  VDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNL 363
                   D+ D   N+ + L G L+    ++     L K  +L      ++GK+     L
Sbjct: 219  SLGRRPEDDRDHYGNKRLDLGGPLLAQLFRQLFRK-LTKDVRLYCQRCIDSGKEIQL-QL 276

Query: 364  ANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRA 423
            A IK       +K I   ++  L TG   +Q   D+  RAG +    RL++   +S  R 
Sbjct: 277  A-IK-------AKTITQGLKYSLATGNWGSQGAQDI--RAGVSQVLNRLSYSSTLSHLRR 326

Query: 424  VHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIR 483
            ++      G +    R+L    WG +CP  TP+G+  GL+ ++     V+    S     
Sbjct: 327  INSPIGREG-KLAKPRQLHNSLWGMICPAETPEGQAVGLVKNLALMALVSVGSPSE---- 381

Query: 484  DFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV--IPSSEIEKVVAHL 541
                    IL  L    M  +L ++  S       + L+G  VGV   P+  +  +    
Sbjct: 382  -------PILEFLDEWTM-ENLEEISPSLIAESTKIFLNGVWVGVHRDPADLVRTLRKLR 433

Query: 542  RRLKVSAASVIPDDLEVGYVPL--SLGGAYPGLYLFTSPPKFVRPVRNISLPSEE----- 594
            R+  V ++  +  D+ +  + L    G     L++     K     ++I L +E+     
Sbjct: 434  RQCDVDSSVSVVHDIRLKELRLYTDYGRCTRPLFIVDDDQKLRIKKQHIELLTEKDVTGY 493

Query: 595  SQNIELIGPF--------EQVFMEIRCPDGGDGGRRNA-------FPATHEEIHPTGMLS 639
            S N  +   F        E+  M     D     R++A          TH EIHP+ +L 
Sbjct: 494  SWNELVTSGFIEYVDTEEEETTMISMTIDDLAAARQSADRKTGVAIRYTHCEIHPSMILG 553

Query: 640  VVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYT 699
            + A++ P+ DHNQSPRN YQ  M KQ MG  V   + R D   Y L  PQ P+V T    
Sbjct: 554  ICASIIPFPDHNQSPRNTYQSAMGKQAMGMYVTNYQIRMDTLGYVLFYPQKPLVTTRAME 613

Query: 700  KYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGN-- 757
                 E P G NA+VA++ YTGY+ ED++++N+S++DRG+     Y++   +    G+  
Sbjct: 614  YLHFRELPAGCNAVVAIMCYTGYNQEDSVLMNQSAIDRGLFRSLYYRSFKDEEKKQGSLS 673

Query: 758  -----KVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNS 812
                 + DR   L  R+      +  +D DGL               IYD    S R + 
Sbjct: 674  REEFERPDRDTCLGMRH----GTYDKLDDDGL---------------IYDSAVLSKRFSK 714

Query: 813  R------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQ 866
            +      K +E+  +D V +   N + L +   +R R  R P +GDKFSSRHGQKG    
Sbjct: 715  KDCSTGMKHAETGIIDQVLL-TTNDQGL-RFVKLRVRSMRTPQVGDKFSSRHGQKGTVGM 772

Query: 867  LWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSV 926
             +   DMPF+   G+ PD+I+NPHA PSRMTI  L+E +  K  +  GK  DATPF    
Sbjct: 773  TYTQEDMPFT-CEGITPDIIVNPHAIPSRMTIGQLVECIMGKVAACMGKEGDATPF---- 827

Query: 927  KKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLR 986
                       +    +++  ML  CG+   G EV+Y+G  G  L  +IFIGP YYQRL+
Sbjct: 828  -----------TPVTAEDISTMLHKCGYQKRGNEVMYNGHTGRMLDAQIFIGPTYYQRLK 876

Query: 987  HMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSD 1046
            HMV DK   R  G +  +TRQP++GR R GG+RFGEMERD +++HGAA  L +RL   SD
Sbjct: 877  HMVDDKIHSRGRGPVQILTRQPMEGRSRDGGLRFGEMERDCIMSHGAASFLKERLMDQSD 936

Query: 1047 YHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYV 1106
             +   VC  CG +  A      K    E    P  R               +  V +PY 
Sbjct: 937  AYRIHVCQKCGLIAVANL----KNQTFECCKNPSERT-------------SVVQVMVPYA 979

Query: 1107 FRYLAAELAAMNI 1119
             + L  EL +M I
Sbjct: 980  CKLLFQELMSMAI 992


>gi|326479873|gb|EGE03883.1| DNA-directed RNA polymerase III subunit RPC2 [Trichophyton equinum
            CBS 127.97]
          Length = 1210

 Score =  359 bits (921), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 203/517 (39%), Positives = 281/517 (54%), Gaps = 59/517 (11%)

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH EI P  +L  VA L PY  HNQSPRN YQC M KQ +G        R D  LY +  
Sbjct: 728  THLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYAMVY 787

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
            PQ P+V+T T      D+ P G NA+VAV++Y+GYD+EDA++LNK SVDRG    Q+++ 
Sbjct: 788  PQKPMVKTRTIELTNYDKLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRK 847

Query: 748  ETIDLSDDGNKV-DRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN 806
             + +L    N   DR     R N  +   H ++D+DGL  VG+ + PGE Y  I  +T +
Sbjct: 848  YSANLKSHSNGTKDRLVGPTRENGVSIRKHGLLDNDGLAAVGEKVSPGEVY--INKETPD 905

Query: 807  SWRTNSRKGSES-------------VFVDYVAVD---MKNSKNLPQKANIRFRHTRNPII 850
            +  ++   GS++                DY  +D   +  ++   Q   ++ R TR P +
Sbjct: 906  NALSSGITGSDAGLPVKYNPTPQTYKLPDYSYIDKVMISTTEGESQLIKVQTRQTRRPEV 965

Query: 851  GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGG 910
            GDKFSSRHGQKGV   +    DMPF+  TG+ PD+I+NPH FPSRMT+  +LE VA K G
Sbjct: 966  GDKFSSRHGQKGVVGIIAEQADMPFTD-TGLVPDIIMNPHGFPSRMTVGKMLELVAGKAG 1024

Query: 911  SLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTE 970
             + G+F   TPF  S                V+E+  +L   GF+Y G + L SG+ G  
Sbjct: 1025 IISGQFGYGTPFGGSP---------------VEEMSAILVDHGFSYGGKDYLTSGITGEP 1069

Query: 971  LTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLA 1030
            LT  +F GP+YYQ+L+HMV DK   R+ G    +TRQP +GR R GG+R GEMERD L+A
Sbjct: 1070 LTYYVFTGPIYYQKLKHMVQDKMHSRARGPRATLTRQPTEGRSRDGGLRLGEMERDCLIA 1129

Query: 1031 HGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCH 1090
            +G + LL +RL   SD H  DVC  CG +  +++                        C 
Sbjct: 1130 YGTSQLLLERLMISSDRHEVDVCESCGFMGYSSW------------------------CQ 1165

Query: 1091 ACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
             C++S G+  + +PY  + L  EL +MN+   L+L D
Sbjct: 1166 RCKSSVGVVKMVIPYAAKLLVQELFSMNVVARLRLQD 1202



 Score = 91.7 bits (226), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 105/450 (23%), Positives = 192/450 (42%), Gaps = 62/450 (13%)

Query: 36  DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
           + CR   ++Y   ++ D  F+Y+     V R     G+ PVML++ +C L    ++++ +
Sbjct: 165 NECRLRDMTYAAPILVD--FEYVRGRQRVKRNGTAIGRMPVMLRSSKCVLSNKSAREMYT 222

Query: 96  LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
           L E   + GGYFI+NG E+    VIL ++    + V      ++E            RK 
Sbjct: 223 LHECPLDPGGYFIVNGTEK----VILVQEQLSKNRVIVETDPKKEIVQASVTSSSHERKS 278

Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
           +S + +K      G + L   +   +  +P+ I+LKA+   +D E+   L    D +Y+ 
Sbjct: 279 KSYIIMK-----KGRIYLRHNVLNDD--IPIVILLKAMGIQSDKEML-LLVAGVDMEYQ- 329

Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEH---------FQPVIDGLQSES 266
                      E   I   E   LS+ T+ Q L+++G           F P      +E+
Sbjct: 330 -----------EDFAINFEEAVKLSIYTQQQALEYLGARIKINRKASGFGPARRNYVAEA 378

Query: 267 YYAVAETVIRDYIFVHLNDNNDKFNLL--IFMLQKLFSLVDHTSVSDNPDSLQNQEILLP 324
             A++  +I     V + D N +   L    M +++       S+ D+ D + N+ + L 
Sbjct: 379 IEAISSVIIS---HVQVQDMNFRPKALYVTHMARRVLMAKLDPSLVDDRDYVGNKRLELA 435

Query: 325 GHLITIYLKEKLEDWLRK---GKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTS 381
           G L+ +      ED  +K     K+  D++     + + F+   +  +   + ++ +  +
Sbjct: 436 GQLLALL----FEDLFKKFCFDIKMNIDKVLKKPVRTEAFDAYPVVAIHGNHITQGMNRA 491

Query: 382 IET---MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS- 437
           I T    LK  R+         +RAG T    RL+++  +     +   + F   R  S 
Sbjct: 492 IATGNWSLKRFRM---------ERAGVTHVLSRLSYIAALGMMTRI--SSQFEKTRKVSG 540

Query: 438 VRKLLPESWGFLCPVHTPDGEPCGLLNHMT 467
            R L P  +G LC   TP+GE CGL+ ++ 
Sbjct: 541 PRALQPSQFGMLCTSDTPEGEACGLVKNLA 570


>gi|340344216|ref|ZP_08667348.1| DNA-directed RNA polymerase subunit beta [Candidatus Nitrosoarchaeum
            koreensis MY1]
 gi|339519357|gb|EGP93080.1| DNA-directed RNA polymerase subunit beta [Candidatus Nitrosoarchaeum
            koreensis MY1]
          Length = 1115

 Score =  359 bits (921), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 325/1193 (27%), Positives = 512/1193 (42%), Gaps = 196/1193 (16%)

Query: 15   LVRHHIESFDYMLDEGLSEMFDHCRQAKI--------------------------SYTGK 48
            + R H+ SFD  L+ GL  + +   Q +I                          S T  
Sbjct: 21   IARQHLNSFDEFLERGLQSIINEVGQIEIENAEYPYKIQLGKVKLQQPRMMELDGSITHI 80

Query: 49   LMADVEFQYLDAGSPVVRE------------RF-NFGQFPVMLKTRRCHLQGADSQKLVS 95
              A+   + +   +PV+ E            RF + G  PVM K+  C L    +QKLV 
Sbjct: 81   TPAEARLRNVSYSAPVMMEASVVEDGKILESRFVHIGDVPVMAKSNACILHNFSTQKLVE 140

Query: 96   LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
              E+  + GGYFI+NG ERV   V L   +Y   +V       RE      V    V   
Sbjct: 141  HGEDPNDPGGYFIINGSERVI--VGLEDLSYNKIIVD------RESVGGNTVFKAKVYSS 192

Query: 156  QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
                  KL  ++     +   + G    +PV  + +AL   +D EI   ++   DE   +
Sbjct: 193  IVGYRAKLELVMKNDGLIVARIPGSPVDIPVVTLTRALGLESDREIAAAVSLV-DEIQNE 251

Query: 216  EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
             +G+               +  D+   T    + +I +   P   G+  E     AET++
Sbjct: 252  LEGS-------------FEKAGDVP--TAKDAIVYISKRIAP---GMLEEFQIKRAETLL 293

Query: 276  RDYIFVHL----NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIY 331
               +  HL     +  +K   L     KL  L       D+ D   N+ I   G ++   
Sbjct: 294  DWGLLPHLGKHPENRKEKAQFLGEAACKLLELKLGWISPDDKDHYGNKVIKFAGQMLADL 353

Query: 332  LKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRL 391
             +    + +R  K     ++E +G+K                    +  +I   + T +L
Sbjct: 354  FRTAFRNLVRDMKY----QLERSGQKRGI---------------NAVAAAIRPGIITDKL 394

Query: 392  --ATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT---SVRKLLPESW 446
              A  TG   + R G T   +R N+L  IS  R +    S    RT      R L    +
Sbjct: 395  NNAIATGNWGRGRVGVTQLLDRTNYLSTISHLRRIQSPLS----RTQPNFEARDLHATHF 450

Query: 447  GFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLP 506
            G +CP  TP+G  CGL+ ++  +  ++    S   +     + T        +    +  
Sbjct: 451  GRICPSETPEGSNCGLVKNLALSGIISVNVPSEEIVEKLYDLGT--------IHFFDAKE 502

Query: 507  KLVKSGPPAVLSVLLDGRVVGVIPS-SEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
             + K G      + +DGR++G     +E+ + +  LRR      S I   + + +   ++
Sbjct: 503  DVKKDGA----RIFVDGRLIGYYKDGAELAESLRELRR-----NSKIHPHVGISFHQSAI 553

Query: 566  GGAYPGLYLFTSPPKFVRPV---------------RNISLPSEESQNIELIGPFEQVFM- 609
             G+   LY+  +  + +RP+                 IS       ++  +G  E +   
Sbjct: 554  EGSTKRLYVNCNAGRVLRPLIIIKDNKPLLTQDLLDKISKKLLSWTDLLRMGVLEMIDAN 613

Query: 610  -EIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMG 668
             E  C    D   +++   TH E+ P  +L   A++ PY +HNQSPRN Y+  MAKQ++G
Sbjct: 614  EEENCYITLD--EKDSKKHTHLEVFPPAILGAGASIIPYPEHNQSPRNTYESAMAKQSLG 671

Query: 669  FSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAM 728
            FS   +      + + +  PQTPIV T      G+++ P G N +VAVL + GY++EDA+
Sbjct: 672  FSTPMMNTSTYVRQHLMLYPQTPIVNTKAMKLLGLEDRPAGQNCVVAVLPFDGYNIEDAI 731

Query: 729  ILNKSSVDRGMCHG---QIYQTETIDLSD---DGNKVDRGQKLFRRNKDAKSLHSVIDSD 782
            +L++SSVDRG+      +IY  E         D  ++   +   R  K  K+ + +++ D
Sbjct: 732  VLSRSSVDRGLGRTFFFRIYDAEAKQYPGGMRDAFEIPNAEDNIRGYKGEKA-YRLLEED 790

Query: 783  GLPYVGQMIHPG-------------EPYCSIYDKTTNSWRTNSRKG---SESVFVDYVAV 826
            G+      +H G             E Y     +++  +R ++  G   SE+  VD V +
Sbjct: 791  GVVASESPVHGGDILIGKTSPPRFMEEYREF--ESSGPYRRDTSIGVRPSETGVVDTVVM 848

Query: 827  DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLI 886
               N      K  IR R  R P IGDKF+SRHGQKGV   L    D+P++   G+ PD++
Sbjct: 849  TQSNEGGKMYK--IRVRDMRIPEIGDKFASRHGQKGVLGILAKAEDLPYTA-DGISPDVL 905

Query: 887  INPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELG 946
            INPHAFPSRMT+ M +ES+  K  +L G   D + F                   +DE+ 
Sbjct: 906  INPHAFPSRMTVGMFMESICGKAAALRGSQFDGSAFVGEK---------------MDEVK 950

Query: 947  EMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITR 1006
             ++   GF Y G E +Y G  G     ++FIG VYYQ+L HMV+DK   R+ G +  +T+
Sbjct: 951  PVMDAAGFKYSGKETMYDGRTGKSFPVDVFIGVVYYQKLHHMVADKIHARARGQVQMLTK 1010

Query: 1007 QPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIH 1066
            QP +GR RGGG+RFGEMERD L+A+GA+ +L DRL   SD     VC  CG V      H
Sbjct: 1011 QPTEGRARGGGLRFGEMERDCLIAYGASMILKDRLLDESDKSDIFVCERCGLVA----YH 1066

Query: 1067 PQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
              K+              +K  C  C     + +V++ Y F+ L  E+ ++N+
Sbjct: 1067 DVKQ--------------RKYICRVCGDKAKVSSVSVAYAFKLLLQEMQSLNV 1105


>gi|302790720|ref|XP_002977127.1| hypothetical protein SELMODRAFT_443461 [Selaginella moellendorffii]
 gi|300155103|gb|EFJ21736.1| hypothetical protein SELMODRAFT_443461 [Selaginella moellendorffii]
          Length = 1386

 Score =  359 bits (921), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 311/1149 (27%), Positives = 506/1149 (44%), Gaps = 170/1149 (14%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQ-------FPVMLKTRRCHLQGAD 89
             CR   ++Y+  +  D+E+     G  ++  +   GQ        PVML++ RC L G  
Sbjct: 351  QCRLRDMTYSAPISVDIEYT---RGKDIITRKGKDGQGAQVIGRMPVMLRSSRCILTGKS 407

Query: 90   SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
              +L  L E   + GGYF++ G E+V   +++ +Q     ++  S  D     T      
Sbjct: 408  DAELAKLGECPLDPGGYFVVKGTEKV---ILIQEQLSKNRIIIDS--DSTGSVTASVTSS 462

Query: 150  RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
               RK ++++ +K   +    V+L  +       +P+ +V+KA+   +D EI   +    
Sbjct: 463  THERKSKTNIIIKHEKIY---VKLNVFSDD----VPIVVVMKAMGMESDQEIIQMVGT-- 513

Query: 210  DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
            D K+      + +P         + E   L + T  Q L+++G   +        ++   
Sbjct: 514  DPKF----AGILAP--------SMQECASLGVYTTHQALEYLGTKVRVNRQWGSKQTKSK 561

Query: 270  VAET------VIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILL 323
            V E       V   ++ VH  D   K   +  ML+++   +      D+ D + N+ + L
Sbjct: 562  VDEARDILLNVFLAHVAVHRYDFRPKCIYVALMLRRMLEAILDKECVDDRDYVGNKRLEL 621

Query: 324  PGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIE 383
             G L+ +      ED  ++    ++  ++    K +  +  ++ K ++ +    + + +E
Sbjct: 622  AGQLLALL----FEDLFKRSCSELKSNVDRTLSKMNRASQYDVSKSLKPD---MLTSGLE 674

Query: 384  TMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLP 443
              + +G    +       + G T    RL+++  +     V   + F   R         
Sbjct: 675  NAISSGNWTVKRF--RMDKKGVTQVVSRLSYIAALGHMTRV--ASQFEKSR--------- 721

Query: 444  ESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP 503
              WG LCP  TP+GE CGL  ++     + +  D    + D        L   +GV  I 
Sbjct: 722  -KWGMLCPCDTPEGEGCGLTKNLALMTHITT-DDEEAPLID--------LCTNLGVEDIN 771

Query: 504  SLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVG-YVP 562
             L         A L V+ +G ++G+      ++    +R+L+ +         ++G +V 
Sbjct: 772  LLSGEEFHSKNAFL-VMFNGTILGI--HRRPQQFATLMRKLRRAG--------KIGEFVS 820

Query: 563  LSLGGAYPGLYLFTSPPKFVRPV----RNISLPSEESQNIELIG--PFEQVFMEIRCPDG 616
            + +      +Y+ +   +  RPV      +S   E        G   F+    E      
Sbjct: 821  IFVNEKQRCIYIASDGGRVCRPVVIADHGVSRIKEHHMKELKDGFRTFDDFLREGLVEYL 880

Query: 617  GDGGRRNAFPATHE----------EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQT 666
                  NA  A +E          EI P  +L V A L PY  HNQSPRN YQC M KQ 
Sbjct: 881  DVNEENNALIALYEKEADSTTTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQA 940

Query: 667  MGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMED 726
            MG        R D  LY L  PQ P++ T +      D+   G NA VAV++Y+GYD+ED
Sbjct: 941  MGNIAYNQLQRIDTLLYLLVYPQRPLLTTKSIELVNYDKLGAGQNASVAVMSYSGYDIED 1000

Query: 727  AMILNKSSVDRGM----------CHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLH 776
            A+++NK+S+DRG           C  + Y+  T+D            ++    +   +  
Sbjct: 1001 AIVMNKASLDRGFGRCIVLKKFSCLVRKYENRTMD------------RIVAPRQHGHATS 1048

Query: 777  SVIDSDGLPYVGQMIHPGEPYCSIYD----KTT---------NSWRTNSR--KG--SESV 819
             ++D DG+  VG+ I+  + + +       KTT         +++R   +  KG   ES 
Sbjct: 1049 QLLDQDGIASVGERIYDKDIFVNKESPKDVKTTFLNPLALPDSAYRPTPQRYKGPLGESA 1108

Query: 820  FVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVT 879
             VD V +    S+ +  K  +  RHTR P +GDKFSSRHGQKGVC  +    D PF+   
Sbjct: 1109 IVDKVLLTTNESQQMVIKCQV--RHTRRPELGDKFSSRHGQKGVCGTIVEQQDFPFTE-R 1165

Query: 880  GMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESK 939
            G+ PDLI+NPH FPSRMT+  ++E +  K G   GK+   + F       + DT    S 
Sbjct: 1166 GVCPDLIMNPHGFPSRMTVGKMIELLGGKAGVQSGKYHYGSAFGEP--SGHADTVEAISA 1223

Query: 940  SLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTG 999
            +LV          GF+Y G +++YSG+ G  L   I++GP+YYQ+L+HMV DK   R+ G
Sbjct: 1224 TLVKH--------GFSYCGKDLIYSGITGCPLQAYIYMGPIYYQKLKHMVLDKMHARAQG 1275

Query: 1000 TMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSV 1059
                +TRQP +GR R GG+R GEMERD L+A+G++ L+ +RL   SD     VC+ CG  
Sbjct: 1276 PRVVLTRQPTEGRSREGGLRLGEMERDCLVAYGSSMLILERLMISSDQFQVQVCTNCG-- 1333

Query: 1060 LTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
            L   + H  K                   C  C+  + M  + +PY  + L  EL +MNI
Sbjct: 1334 LLGYYSHKLKMNF----------------CSYCKNGENMAAMKLPYACKLLFQELQSMNI 1377

Query: 1120 KITLQLGDG 1128
               LQL + 
Sbjct: 1378 VPRLQLAEA 1386


>gi|410932093|ref|XP_003979428.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like, partial
            [Takifugu rubripes]
          Length = 982

 Score =  359 bits (921), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 297/981 (30%), Positives = 445/981 (45%), Gaps = 125/981 (12%)

Query: 184  LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTT 243
            +P+ IV +AL   +D +I  H+   +D+           P + E VK  L E     +  
Sbjct: 75   VPIIIVFRALGFVSDRDILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQE 121

Query: 244  RLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQK 299
            +   L  IG   +    G+  E     A+ V++  +  H+  ++     K   L +M+ +
Sbjct: 122  QNVALNFIGS--RGAKPGVTKERRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHR 179

Query: 300  LFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFD 359
            L          D+ D   N+ + L G L+    +   ++ L++ +   Q  I + GK F+
Sbjct: 180  LLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQKFI-DRGKDFN 238

Query: 360  FFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFIS 419
               LA IK       ++ I   ++  L TG          Q RAG +    RL F   +S
Sbjct: 239  L-ELA-IK-------TRIISDGLKYSLATGNWGDVKKAH-QARAGVSQVLNRLTFASTLS 288

Query: 420  FFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSR 479
              R V+      G +    R+L    WG +CP  TP+G   GL+ ++         Y S 
Sbjct: 289  HLRRVNSPIGRDG-KLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMA-----YISV 342

Query: 480  GNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVA 539
            G+        + IL  L    M  +L ++  +       + ++G  VG+    + E+++ 
Sbjct: 343  GS------QPSPILEFLEEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMN 393

Query: 540  HLRRLK------VSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSE 593
             LR+L+      VS  S+I D  E      +  G      L     K +   R+I    E
Sbjct: 394  TLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKE 453

Query: 594  ESQN------------IELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLS 639
               N            +E I   E+  V + +   D  + G       TH EIHP+ +L 
Sbjct: 454  REYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILG 513

Query: 640  VVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYT 699
            V A++ P+ DHNQSPRN YQ  M KQ MG  +     R D   + L  PQ P+V T +  
Sbjct: 514  VCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSME 573

Query: 700  KYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV 759
                 E P G N+IVA+ +YTGY+ ED++I+N+S+VDRG      Y++     S  G   
Sbjct: 574  YLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKG--F 631

Query: 760  DRGQKLFRRNKDA-----KSLHSVIDSDGLPYVGQMIHPGEPY-----CSIYDKTTNSWR 809
            D+ +   +  ++       +++  +D DGL   G  +  GE        ++ D       
Sbjct: 632  DQEEIFEKPTRETCQGMRHAIYEKLDDDGLIAPGVRV-SGEDVIIGKTVTLPDNEDELES 690

Query: 810  TNSR----------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHG 859
            TN R          + SE+  VD V V +       +   IR R  R P IGDKF+SRHG
Sbjct: 691  TNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHG 748

Query: 860  QKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDA 919
            QKG C   +   DMPF+   G+ PD+IINPHA PSRMT+  L+E +  K  +  G+  DA
Sbjct: 749  QKGTCGIQYRQEDMPFT-CEGITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDA 807

Query: 920  TPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGP 979
            TPF ++V               V ++  +L   G++  G EVLY+G  G +LT +IFIGP
Sbjct: 808  TPFNDAVN--------------VQKVSNLLSEYGYHLRGNEVLYNGFTGRKLTSQIFIGP 853

Query: 980  VYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHD 1039
             YYQRL+HMV DK   R+ G +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +
Sbjct: 854  TYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLKE 913

Query: 1040 RLHTCSDYHVADVCSLCGSVLTA-TFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGM 1098
            RL   SD +   VC+LCG +  A T  H  +                   C  C+    +
Sbjct: 914  RLFEASDPYQVHVCNLCGLMAIANTRTHTYE-------------------CRGCRNKTQI 954

Query: 1099 ETVAMPYVFRYLAAELAAMNI 1119
              V MPY  + L  EL +M+I
Sbjct: 955  SLVRMPYACKLLFQELMSMSI 975


>gi|401426102|ref|XP_003877535.1| DNA-directed RNA polymerase II subunit 2,putative [Leishmania
            mexicana MHOM/GT/2001/U1103]
 gi|322493781|emb|CBZ29070.1| DNA-directed RNA polymerase II subunit 2,putative [Leishmania
            mexicana MHOM/GT/2001/U1103]
          Length = 1185

 Score =  358 bits (920), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 314/1160 (27%), Positives = 519/1160 (44%), Gaps = 137/1160 (11%)

Query: 18   HHIESFDYMLDEGLSEMF-DHCRQAKISY--TGKLMADVEFQYLDAGSP--VVRERFNFG 72
            H  +S  Y     L  +F + CR   ++Y    ++   VE  +  A +P          G
Sbjct: 110  HQTQS--YFAGGSLPPLFPNECRLRDMTYDAQAQVTLGVELYHPHADTPHDTFLRNVELG 167

Query: 73   QFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVR 132
            + P+MLK+ RC+L G D  +L  L E   + GGYF++NG E+V    ++ ++    + V 
Sbjct: 168  RIPIMLKSMRCNLSGKDEDELPRLNECPHDQGGYFVINGTEKV----LIAQERQAANHVY 223

Query: 133  SSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLL---NGSVRLGFWLQGKEYLLPVGIV 189
            +  R +      K++V   + K ++   +  Y      +G   L   +   +  +P+ ++
Sbjct: 224  TFSRQKGLLCEVKSIVEGSLNKPRTLQIIMQYKNKGPGSGFENLMCRVAQMDETIPLFVL 283

Query: 190  LKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQ 249
             +A+    D EI    T   D K            + E ++  +++   L + TR + L 
Sbjct: 284  FRAMDMVADKEILQ--TVVPDLK---------DTAMLELLRGSMSDASTLQIFTREEALG 332

Query: 250  HIGEHF--QPVIDGLQSESYYAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQKLFSL 303
            +IG     Q  +  LQ E     AE+++   +  H+    + N  K   + +M+ KL  +
Sbjct: 333  YIGRRLGKQDAMANLQRE-----AESLLMRDLLPHMGTDPSANRTKCLYMGYMVHKLLLV 387

Query: 304  VDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNL 363
                    + D L ++ I + G L+T+ L+  L    ++  K +QD   N    F F  +
Sbjct: 388  ALGRHEETDRDFLGHKRIDVAGTLLTVQLQTFLAQVRKEMIKTLQDHAANPRGVFSFGRV 447

Query: 364  ANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRA 423
             +  K++     + + T     LKTG + T          G      RL +   +S  R 
Sbjct: 448  IH-SKLITDGLRRCLATGNFGDLKTGNIKT----------GVAQTLNRLTYSSSLSNLRR 496

Query: 424  VHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIR 483
            +    + A  + T  R L    WG++CPV TP+G   GLL ++   C +     SRG   
Sbjct: 497  IQNPIA-ASSKATRPRNLHCTQWGYICPVETPEGGSIGLLKNVALMCLM-----SRGT-- 548

Query: 484  DFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRR 543
            D +++  ++   + G   I     L  +    V  V ++G ++GV      E+++  LR 
Sbjct: 549  DHAEVVQAVQARIDGFRTI----GLEDTADVRVARVFVNGTMIGV--DRNPERLLHDLRT 602

Query: 544  LKVSA-----ASVIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEES- 595
             + +       S++ D  D E+     +     P         K  +      L SE++ 
Sbjct: 603  RRRNGELSNEVSIVRDIRDREIRVFSDAGRCLRPLFVAENCHLKLRKSGMRDLLVSEKAG 662

Query: 596  --QNIELIGPFEQVFMEIRCPDGGDGGRRNAFPA--------THEEIHPTGMLSVVANLT 645
              ++I      ++ ++E+   +  D       P+        +H E+ P+ +L + A++ 
Sbjct: 663  GKKSISWSTALKKGYVELIDCEEEDSLLIAMTPSEVEKNYYYSHCEMDPSMILGICASII 722

Query: 646  PYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDE 705
            PY +HNQSPRN YQ  M KQ MG        R D   + L  PQ P+VRT   T    ++
Sbjct: 723  PYPNHNQSPRNTYQSAMGKQAMGIYASNFNMRMDTTAHVLFYPQKPLVRTKAMTYMHSND 782

Query: 706  YPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKL 765
             P G NA+VA+  Y+GY+ ED++I+++S+V+RG      +++      ++  K D  +  
Sbjct: 783  LPAGHNAVVAISCYSGYNQEDSIIMSRSAVERGFFRSAFWRS--FKAKEERQKRDALETF 840

Query: 766  FRRNKDA----KSLHSVIDSDGLPYVGQMIHPGE---------PYCSIYDKTTNSWRTNS 812
               +++     ++ +S +D+DGL   G  +  G+         P   +   TT + +   
Sbjct: 841  ENPDREVCRVKRADYSKLDTDGLIKPGMRVLGGDVVVGKTIPLPEADLEKLTTGNTKITK 900

Query: 813  R------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQ 866
            R      + +E   VD V + M N+    +   ++ R  + P IGDKF SRHGQKG    
Sbjct: 901  RDASITSRATEKGVVDKVMLTMNNNDRFTK---VKIRTIKIPNIGDKFCSRHGQKGTNGI 957

Query: 867  LWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSV 926
             +   DMPF+   G+ PDLIINPHA PSRMT+A L+E++A K     G  + ATPF + V
Sbjct: 958  QFRQEDMPFNR-DGIVPDLIINPHAIPSRMTVAHLIETLAGKVACYKGGEVYATPFCSVV 1016

Query: 927  KKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLR 986
                           VD+ G+ L       +G E LY+G  G  L   IF GP +YQRL+
Sbjct: 1017 ---------------VDDFGKALHALRSQRYGNECLYNGHTGLPLDHLIFFGPTFYQRLK 1061

Query: 987  HMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSD 1046
            H+  DK   R  G +  + RQP +GR   GG+RFGEMERD +L++GA+  L +RL   SD
Sbjct: 1062 HLSGDKIHARPRGPLQPLVRQPTEGRAHEGGLRFGEMERDCMLSYGASQWLRERLFRVSD 1121

Query: 1047 YHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYV 1106
            Y+   VC++CG++  A                       +  C  C+    +  V MPY 
Sbjct: 1122 YYTVHVCNMCGTICVAD------------------TKLNRYQCKGCENDTRISQVLMPYA 1163

Query: 1107 FRYLAAELAAMNIKITLQLG 1126
             + L  EL +M I   L  G
Sbjct: 1164 CKLLFQELMSMTILPRLGTG 1183


>gi|358337637|dbj|GAA55991.1| DNA-directed RNA polymerase II subunit RPB2 [Clonorchis sinensis]
          Length = 1921

 Score =  358 bits (920), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 309/1134 (27%), Positives = 488/1134 (43%), Gaps = 153/1134 (13%)

Query: 39   RQAKISYTGKLMADVEFQYL--DAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
            R   ++Y   L  DV  + +  D       E+   G+ P+ML++  C L     + L  L
Sbjct: 876  RLRNLTYAAPLYVDVMKKIIRDDGEEEKPLEKKFIGKIPIMLRSTYCLLSIMSDRDLAEL 935

Query: 97   KEEAAEMGGYFILNGLERVF-------RSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
             E   + GGYFI+NG E+V         + +L   + P S +  +   R      K   I
Sbjct: 936  NECPLDPGGYFIINGSEKVLIAQEKMATNTVLEHSSRPASTLWINMMARGGKDGSKRATI 995

Query: 150  RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
                  Q  V +  Y                +  +PV IV +AL    D +I  H+   +
Sbjct: 996  -----GQRIVAILPYI---------------KQEIPVLIVFRALGFVADRDILEHIIYDF 1035

Query: 210  DEKYKKE--KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESY 267
            D+   +E  K ++    V +  K+                L  IG   +    G+  E  
Sbjct: 1036 DDTEMREMIKPSLDDAFVIQEQKV---------------ALNFIGS--RGARPGVTKEKR 1078

Query: 268  YAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILL 323
               A+ +++     H+  ++     K   L +M+ +L          D+ D   N+ + L
Sbjct: 1079 IKYAKEILQKETLPHVGVSDFCETRKAYFLGYMVHRLLLAALKRRDVDDRDHYGNKRLDL 1138

Query: 324  PGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIE 383
             G L+    +    + L K  +L   +  + GK F      N++  +    S+ I   ++
Sbjct: 1139 AGPLLAFLFRGLFRN-LTKEIRLYAQKFIDKGKDF------NLELAIR---SQIITDGLK 1188

Query: 384  TMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLP 443
              L TG    Q   + Q R G +    RL F   +S  R ++      G +    R+L  
Sbjct: 1189 YSLATGNWGDQKKAN-QARPGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLARPRQLHN 1246

Query: 444  ESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP 503
              WG +CP  TP+G   GL+ ++     ++                + IL  L    M  
Sbjct: 1247 TLWGMICPAETPEGSAVGLVKNLALMAYIS-----------VGSQPSPILEFLEEWSM-E 1294

Query: 504  SLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAASVIPDDLE 557
            +L ++  S       + ++G  VG+  S +   ++  LR+L+      VS  S++ D  +
Sbjct: 1295 NLEEIAPSAIGKTCKIFVNGCWVGIHNSPD--HLMVTLRKLRRQVDVIVSEVSMVRDYRD 1352

Query: 558  VGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------IELIGPFE 605
                  +  G      +     K +    +I    +++ N            +E I   E
Sbjct: 1353 QEIRIYTDAGRICRPLVIVEKGKLLLKRSHIEFLKDKAYNRYSWQDLVLSGVVEYIDTLE 1412

Query: 606  Q-VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAK 664
            +   M    P             TH EIHP+ +L + A++ P+ DHNQSPRN YQ  M K
Sbjct: 1413 EETVMIAMGPAEMQAAVHYCKTHTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGK 1472

Query: 665  QTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDM 724
            Q MG  +     R D     L  PQ P+V T +       E P G NAIVA+  YTGY+ 
Sbjct: 1473 QAMGVYISNFHTRMDTLANVLYYPQKPLVATRSMEYLRFRELPAGINAIVAIATYTGYNQ 1532

Query: 725  EDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA-----KSLHSVI 779
            ED++ILN+S++ RG    + Y+T     +  G  +D+ +   + N         +++  +
Sbjct: 1533 EDSVILNESAIQRGFFRSEFYRTYKDQEARHG--MDQEEVFEKPNPQQCQGMRHAIYDKL 1590

Query: 780  DSDGLPYVGQMIHPGEPYCSIY-------DKTTNSWRTNSRKG-------SESVFVDYVA 825
            D DGL   G  +   +             D+     R  +++        SE   VD V 
Sbjct: 1591 DDDGLIAPGTRVSGDDVLIGKTITLPENEDEMEGGQRRYTKRDASVFMRRSEYGIVDQVM 1650

Query: 826  VDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDL 885
            +   N  N  +   +R R T+ P +GDKF+SRHGQKG C   +   DMPF+   G+ PD+
Sbjct: 1651 ITWNNEGN--KFCKVRVRTTKTPQVGDKFASRHGQKGTCGIRYRQEDMPFT-CEGITPDI 1707

Query: 886  IINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDEL 945
            IINPHA PSRMTI  L+E +  K  +  G+  DATPF ++V               V ++
Sbjct: 1708 IINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVN--------------VRKI 1753

Query: 946  GEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQIT 1005
              +L+  G+ + G E++Y+G  G +L  +IF+GP YYQRL+HMV DK   R+ G +  + 
Sbjct: 1754 SLLLQEYGYQHTGNEIMYNGFTGRKLNSQIFLGPTYYQRLKHMVDDKIHSRARGPVQILN 1813

Query: 1006 RQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFI 1065
            RQP++GR R GG+RFGEMERD  +AHGAA  L +RL   SD +   VC+LCG +  A   
Sbjct: 1814 RQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFFASDPYQVYVCNLCGLIAIA--- 1870

Query: 1066 HPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
            H +                K   C +C+ +  +  V +PY  + L  EL +M+I
Sbjct: 1871 HQRN---------------KTYECRSCKNTTQISLVKLPYACKLLFQELMSMSI 1909


>gi|392571043|gb|EIW64215.1| DNA-dependent RNA polymerase II second largest subunit [Trametes
            versicolor FP-101664 SS1]
          Length = 1231

 Score =  358 bits (919), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 311/1176 (26%), Positives = 511/1176 (43%), Gaps = 191/1176 (16%)

Query: 39   RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
            R+   S TG ++ + E       +P    +   G+ P+ML++  C L G +  +L  L E
Sbjct: 146  REDPDSATGDMVWETEHD----DNPEDTRKVWIGKVPIMLRSTFCILHGLEDDELYDLNE 201

Query: 99   EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
               + GGYFI+NG E+V    ++ ++    + V    + +    +  A +   V K   +
Sbjct: 202  CPYDSGGYFIINGSEKV----LIAQERMATNHVYVFAKAQPSPISFLAEIRSAVEKGGKT 257

Query: 159  VT---LKLYYLLNGSVRLGFWLQGK-EYL---LPVGIVLKALVDTNDLEIFNHLTCCYDE 211
            ++   +KLY+  +    LG  ++    Y+   +P+ +V +AL   +D +I  H+  CYD 
Sbjct: 258  ISQFQVKLYHR-SQERSLGNVMKATIPYIKVDIPIWVVFRALGVISDRDILEHI--CYDM 314

Query: 212  KYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVA 271
            +   +   +  P + E   I   E+           L +IG   +    GL  E     A
Sbjct: 315  Q-DNQMLEMLKPCIDEGFVIQDREI----------ALDYIGN--RGTTTGLNRERRLRYA 361

Query: 272  ETVIRDYIFVHLN----DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
            + +++  +  H++      + K     +M+ +L          D+ D    + + L G L
Sbjct: 362  QEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRDLDDRDHFGKKRLDLAGPL 421

Query: 328  ITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLK 387
            +    +       +   + +Q  +E + +    F L    K         I   ++  L 
Sbjct: 422  LANLFRMLFRKLTKDVYRYLQKCVETHKE----FQLGLAVK------HNTITNGLKYSLA 471

Query: 388  TGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWG 447
            TG    Q    +  +AG +    R  +   +S  R  +      G +    R+L    WG
Sbjct: 472  TGNWGDQKKT-MSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREG-KIAKPRQLHNTHWG 529

Query: 448  FLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPK 507
             +CP  TP+G+ CGL+ +++    ++              +   ++  L   G+  SL +
Sbjct: 530  MVCPAETPEGQACGLVKNLSLMSCIS-----------VGSLSAPVIEFLEEWGL-ESLEE 577

Query: 508  LVKSGPPAVLSVLLDGRVVGV--IPSSEIEKVVAHLRRLKVSA-ASVIPDDLEVGYVPLS 564
               S  P    V ++G  +GV   P++ ++ +    R+  +SA  SV+ D  E       
Sbjct: 578  NAHSSTPCT-KVFVNGVWMGVHRDPANLVKTIKKLRRKDDISAEVSVVRDIRE------- 629

Query: 565  LGGAYPGLYLFTSPPKFVRP---------------VRNISLPSEESQN------------ 597
                   L L+T   +  RP               + N++   EE +             
Sbjct: 630  -----RELRLYTDAGRVCRPLFIVENQQLLLQKKHIENLARGKEEPEKDATKFEYKWDNL 684

Query: 598  -----IELI-GPFEQVFMEIRCPDGGDGGR------------------------RNAFPA 627
                 IEL+    E+  M    P+  +  R                         NA   
Sbjct: 685  IKDGVIELLDAEEEETVMICMTPEDLENSRLQSAGIDPHENDGELDPSARLKAPTNAHTW 744

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH EIHP+ +L V A++ P+ DHNQSPRN YQ  M KQ MG  +     R D     L  
Sbjct: 745  THCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYY 804

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
            PQ P+  T +       E P G NA+VA+L Y+GY+ ED++I+N+SS+DRG+     Y++
Sbjct: 805  PQKPLATTRSMEYLKFRELPAGQNAVVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRS 864

Query: 748  ETIDLSDDGNKVDRGQKLFRRNKDAK-----SLHSVIDSDGLPYVGQ-------MIHPGE 795
              +DL +  + + + ++  +  +D+        +  ++ DGL   G        +I    
Sbjct: 865  -YMDL-EKKSGIQQLEEFEKPTRDSTLRMKHGTYDKLEDDGLIAPGTNVNGEDIIIGKTA 922

Query: 796  PYCSIYDKTTNSWRTNSR-------KGSESVFVDYVAVDMKNSKNLPQK-ANIRFRHTRN 847
            P     ++     RT+++       K +E   +D V +   N++   QK   IR R TR 
Sbjct: 923  PIPPDSEELGQRTRTHTKRDVSTPLKSTEQGIIDQVLI-TTNAEG--QKFVKIRVRSTRI 979

Query: 848  PIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAA 907
            P IGDKF+SRHGQKG     +   DMPF+   G+ PD+IINPHA PSRMTI  L+E + +
Sbjct: 980  PQIGDKFASRHGQKGTIGITYRQEDMPFTA-EGITPDIIINPHAIPSRMTIGHLVECLLS 1038

Query: 908  KGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVY 967
            K  +L G   DATPF +                 V+ + + LR  G+   G+E++Y G  
Sbjct: 1039 KVATLIGNEGDATPFTDLT---------------VESVSQFLRQKGYQSRGLEIMYHGHT 1083

Query: 968  GTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDS 1027
            G ++  ++++GP YYQRL+HMV DK   R+ G +  +TRQP++GR R GG+RFGEMERD 
Sbjct: 1084 GRKIQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDC 1143

Query: 1028 LLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKV 1087
            +++HG A  L +RL   SD +   VC +CG    A                      +  
Sbjct: 1144 MISHGVAAFLKERLFEASDAYRLHVCDICGLTAIANL------------------KKQTF 1185

Query: 1088 TCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITL 1123
             C AC+       + +PY  + L  EL +MNI   L
Sbjct: 1186 ECRACRNKTACSQIYIPYAAKLLFQELQSMNIAARL 1221


>gi|68475107|ref|XP_718439.1| hypothetical protein CaO19.10857 [Candida albicans SC5314]
 gi|68475648|ref|XP_718172.1| hypothetical protein CaO19.3349 [Candida albicans SC5314]
 gi|46439928|gb|EAK99240.1| hypothetical protein CaO19.3349 [Candida albicans SC5314]
 gi|46440204|gb|EAK99513.1| hypothetical protein CaO19.10857 [Candida albicans SC5314]
 gi|238879352|gb|EEQ42990.1| DNA-directed RNA polymerase II polypeptide 2 [Candida albicans WO-1]
          Length = 1234

 Score =  358 bits (919), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 326/1145 (28%), Positives = 495/1145 (43%), Gaps = 182/1145 (15%)

Query: 71   FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSM 130
             G+ P+ML+++ C L+     +   LKE   +MGGYF++NG E+V    ++ ++    ++
Sbjct: 161  LGKVPIMLRSKFCMLRDLAEHEFYELKECPYDMGGYFVINGSEKV----LIAQERSAANI 216

Query: 131  VRSSFRDRREGYTDKAVVIRCVRKDQ---SSVTLKLYYLLNGSVRLGFWLQGKEYL---L 184
            V+   +      +  A +   + K     SS+ +KLY      V          Y+   +
Sbjct: 217  VQVFKKAAPSPISHVAEIRSAIEKGSRLISSMQIKLYGRDEKGVSGRTIKATLPYIKEDI 276

Query: 185  PVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTR 244
            P+ IV +AL    D +I  H+  CYD     +   +  P V E   I   EV        
Sbjct: 277  PIVIVFRALGVVPDGDILEHI--CYDAN-DWQMLEMLKPCVEEGFVIQEREV-------- 325

Query: 245  LQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNND----KFNLLIFMLQKL 300
               L  IG      + G++ E     A+ +++  +  ++         K   L +M+ +L
Sbjct: 326  --ALDFIGRRG---VLGIRREKRIQYAKDILQKELLPNITQEEGFETRKAFFLGYMVNRL 380

Query: 301  FSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDF 360
                      D+ D    + + L G L+    +   +   +     +Q  +EN G     
Sbjct: 381  LLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIYNYMQRCVENGGD---- 436

Query: 361  FNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISF 420
            FN+    K      S+ I   +   L TG    Q    +  RAG +    R  +   +S 
Sbjct: 437  FNVTLAVK------SQTITDGLRYSLATGNWGEQRKA-MSSRAGVSQVLNRYTYSSTLSH 489

Query: 421  FRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGL---LNHMTSTCRVASYYD 477
             R  +      G +    R+L    WG +CP  TP+G+ CGL   L+ MT          
Sbjct: 490  LRRTNTPIGRDG-KIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTPSEP 548

Query: 478  SRGNIRDF--------------SKMRTSILRVLIGVGMIPS-----LPKLVKSG--PPAV 516
              G +RD+                 R  +  V +GV   P+     + +L +SG   P V
Sbjct: 549  ILGFLRDYGLEVLEDYVPSNAPDSTRVFVNGVWVGVHRDPAALVDFMRELRRSGDLSPEV 608

Query: 517  LSVLLDGR------------------VVGVIPSSE----IEKVVAHLRRL---------- 544
             S++ D R                  +V   P SE    ++    H+++L          
Sbjct: 609  -SIIRDIREKEFKIFTDAGRVYRPLFIVDDNPDSETKGELKITKEHVKQLLRSDELDEDD 667

Query: 545  ------KVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNI 598
                  + + +S++ D + V YV            +    P  V+  +N S+   E Q I
Sbjct: 668  EDYENSRYTWSSLVADGI-VEYV----DAEEEETIMIAMTPDDVKASKN-SVSESEQQKI 721

Query: 599  ELIGPFEQVFMEIRCPDGGDGGRR-------NAFPATHEEIHPTGMLSVVANLTPYSDHN 651
            +L    EQ           D G+R       N    TH EIHP+ +L V A++ P+ DHN
Sbjct: 722  QL---EEQEL---------DPGKRIKPTTSGNTHTYTHCEIHPSMILGVAASIIPFPDHN 769

Query: 652  QSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTN 711
            QSPRN YQ  M KQ MG  +     R D     L  PQ P+  T +       E P G N
Sbjct: 770  QSPRNTYQSAMGKQAMGVFLTNYSVRMDTMANILYYPQKPLGTTRSMEYLKFRELPAGQN 829

Query: 712  AIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKD 771
            AIVA+  Y+GY+ ED+MI+N+SS+DRG+     +++        G K     +   R+  
Sbjct: 830  AIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDIEKRQGMKALETFEKPTRSDT 889

Query: 772  AKSLHSV---IDSDGL--PYV---GQMIHPGEPYCSIYDKTTNSWRTNSR---------K 814
             +  H     +D DGL  P V   G+ I  G+      D      RT            +
Sbjct: 890  LRLKHGTYEKLDEDGLIAPGVRVSGEDIIIGKTTPIPADAEELGQRTQYHTKRDASTPLR 949

Query: 815  GSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMP 874
             +ES  VD V   +  + +  +   +R R T+ P IGDKF+SRHGQKG     +   DMP
Sbjct: 950  STESGIVDQVL--LTTNGDGSKFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRHEDMP 1007

Query: 875  FSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTG 934
            F+   G+ PDLIINPHA PSRMT+A L+E + +K  SL G   DA+PF +          
Sbjct: 1008 FTA-EGIVPDLIINPHAIPSRMTVAHLIECLLSKVSSLSGFEGDASPFTDVT-------- 1058

Query: 935  TDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQ 994
                    +++  +LR  G+   G EV+Y+G  G +L  ++F GP YYQRLRHMV DK  
Sbjct: 1059 -------TEQISTLLRDHGYQSRGFEVMYNGHTGKKLMAQVFFGPTYYQRLRHMVDDKIH 1111

Query: 995  VRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCS 1054
             R+ G +  +TRQP++GR R GG+RFGEMERD ++AHGAA  L +RL   SD     VC 
Sbjct: 1112 ARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCG 1171

Query: 1055 LCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAEL 1114
            +CG  L +   + +K                +  C +C+    +  + +PY  + L  EL
Sbjct: 1172 MCG--LMSVIANLKK---------------NQFECRSCKNKTNIYQIHIPYAAKLLFQEL 1214

Query: 1115 AAMNI 1119
             AMNI
Sbjct: 1215 MAMNI 1219


>gi|326468641|gb|EGD92650.1| DNA-directed RNA polymerase III [Trichophyton tonsurans CBS 112818]
          Length = 1210

 Score =  358 bits (919), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 203/517 (39%), Positives = 281/517 (54%), Gaps = 59/517 (11%)

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH EI P  +L  VA L PY  HNQSPRN YQC M KQ +G        R D  LY +  
Sbjct: 728  THLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYAMVY 787

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
            PQ P+V+T T      D+ P G NA+VAV++Y+GYD+EDA++LNK SVDRG    Q+++ 
Sbjct: 788  PQKPMVKTRTIELTNYDKLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRK 847

Query: 748  ETIDLSDDGNKV-DRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN 806
             + +L    N   DR     R N  +   H ++D+DGL  VG+ + PGE Y  I  +T +
Sbjct: 848  YSANLKSYSNGTKDRLVGPTRENGVSIRKHGLLDNDGLAAVGEKVSPGEVY--INKETPD 905

Query: 807  SWRTNSRKGSES-------------VFVDYVAVD---MKNSKNLPQKANIRFRHTRNPII 850
            +  ++   GS++                DY  +D   +  ++   Q   ++ R TR P +
Sbjct: 906  NALSSGITGSDAGLPVKYNPTPQTYKLPDYSYIDKVMISTTEGESQLIKVQTRQTRRPEV 965

Query: 851  GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGG 910
            GDKFSSRHGQKGV   +    DMPF+  TG+ PD+I+NPH FPSRMT+  +LE VA K G
Sbjct: 966  GDKFSSRHGQKGVVGIIAEQADMPFTD-TGLVPDIIMNPHGFPSRMTVGKMLELVAGKAG 1024

Query: 911  SLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTE 970
             + G+F   TPF  S                V+E+  +L   GF+Y G + L SG+ G  
Sbjct: 1025 IISGQFGYGTPFGGSP---------------VEEMSAILVDHGFSYGGKDYLTSGITGEP 1069

Query: 971  LTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLA 1030
            LT  +F GP+YYQ+L+HMV DK   R+ G    +TRQP +GR R GG+R GEMERD L+A
Sbjct: 1070 LTYYVFTGPIYYQKLKHMVQDKMHSRARGPRATLTRQPTEGRSRDGGLRLGEMERDCLIA 1129

Query: 1031 HGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCH 1090
            +G + LL +RL   SD H  DVC  CG +  +++                        C 
Sbjct: 1130 YGTSQLLLERLMISSDRHEVDVCESCGFMGYSSW------------------------CQ 1165

Query: 1091 ACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
             C++S G+  + +PY  + L  EL +MN+   L+L D
Sbjct: 1166 RCKSSVGVVKMVIPYAAKLLVQELFSMNVVARLRLQD 1202



 Score = 91.7 bits (226), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 107/450 (23%), Positives = 188/450 (41%), Gaps = 62/450 (13%)

Query: 36  DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
           + CR   ++Y   ++ D  F+Y+     V R     G+ PVML++ +C L    ++++ +
Sbjct: 165 NECRLRDMTYAAPILVD--FEYVRGRQRVKRNGTAIGRMPVMLRSSKCVLSNKSAREMYT 222

Query: 96  LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
           L E   + GGYFI+NG E+    VIL ++    + V      ++E            RK 
Sbjct: 223 LHECPLDPGGYFIVNGTEK----VILVQEQLSKNRVIVETDPKKEIVQASVTSSSHERKS 278

Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
           +S + +K      G + L   +   +  +P+ I+LKA+   +D E+   L    D +Y+ 
Sbjct: 279 KSYIIMK-----KGRIYLRHNVLNDD--IPIVILLKAMGIQSDKEML-LLVAGVDMEYQ- 329

Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEH---------FQPVIDGLQSES 266
                      E   I   E   LS+ T+ Q L+++G           F P      +E+
Sbjct: 330 -----------EDFAINFEEAVKLSIYTQQQALEYLGARIKINRKASGFGPARRNYVAEA 378

Query: 267 YYAVAETVIRDYIFVHLNDNNDKFNLL--IFMLQKLFSLVDHTSVSDNPDSLQNQEILLP 324
             A++  +I     V + D N +   L    M +++       S+ D+ D + N+ + L 
Sbjct: 379 IEAISSVIIS---HVQVQDMNFRPKALYVTHMARRVLMAKLDPSLVDDRDYVGNKRLELA 435

Query: 325 GHLITIYLKEKLEDWLRKGKKLIQDEIENNGKK------FDFFNLANIKKVMEKNPSKQI 378
           G L+ +      ED  +K    I+  I+   KK      FD + +  I           I
Sbjct: 436 GQLLALL----FEDLFKKFCFDIKMNIDKVLKKPVRTEAFDAYPVVAIH-------GNHI 484

Query: 379 GTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS- 437
              +   + TG  + +      +RAG T    RL+++  +     +   + F   R  S 
Sbjct: 485 TQGMNRAIATGNWSLKRF--RMERAGVTHVLSRLSYIAALGMMTRI--SSQFEKTRKVSG 540

Query: 438 VRKLLPESWGFLCPVHTPDGEPCGLLNHMT 467
            R L P  +G LC   TP+GE CGL+ ++ 
Sbjct: 541 PRALQPSQFGMLCTSDTPEGEACGLVKNLA 570


>gi|389594282|ref|XP_001685000.2| putative DNA-directed RNA polymerase II subunit 2 [Leishmania major
            strain Friedlin]
 gi|321399803|emb|CAJ08180.2| putative DNA-directed RNA polymerase II subunit 2 [Leishmania major
            strain Friedlin]
          Length = 1185

 Score =  358 bits (919), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 310/1141 (27%), Positives = 510/1141 (44%), Gaps = 134/1141 (11%)

Query: 36   DHCRQAKISY--TGKLMADVEFQYLDAGSP--VVRERFNFGQFPVMLKTRRCHLQGADSQ 91
            + CR   ++Y    ++   VE  +  A +P          G+ P+MLK+ RC+L G D  
Sbjct: 127  NECRLRDMTYDAQAQVTLGVELYHPHADTPHDTFLRNVELGRIPIMLKSMRCNLSGKDED 186

Query: 92   KLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC 151
            +L  L E   + GGYF++NG E+V    ++ ++    + V +  R +      K++V   
Sbjct: 187  ELPRLNECPHDQGGYFVINGTEKV----LIAQERQAANHVYTFSRQKGLLCEVKSIVEGS 242

Query: 152  VRKDQSSVTLKLYYLL---NGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
            + K ++   +  Y      +G   L   +   +  +P+ ++ +A+    D EI    T  
Sbjct: 243  LNKPRTLQIIMQYRNKGPGSGFENLMCRVAQMDETIPLFVLFRAMDMVADKEILQ--TVV 300

Query: 209  YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHF--QPVIDGLQSES 266
             D K            + E ++  +++   L + TR + L +IG     Q  +  LQ E 
Sbjct: 301  PDLK---------DTAMLELLRGSMSDASTLQIFTREEALGYIGRRLGKQDAMANLQRE- 350

Query: 267  YYAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEIL 322
                AE+++   +  H+    + N  K   + +M+ KL  +        + D L ++ I 
Sbjct: 351  ----AESLLMRDLLPHMGTDPSANRTKCLYMGYMVHKLLLVALGRHEETDRDFLGHKRID 406

Query: 323  LPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSI 382
            + G L+T+ L+  L    ++  K +QD   N    F F  + +  K++     + + T  
Sbjct: 407  VAGTLLTVQLQTFLAQVRKEMIKTLQDHAANPRGVFSFGRVIH-SKLITDGLRRCLATGN 465

Query: 383  ETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLL 442
               LKTG + T          G      RL +   +S  R +    + A  + T  R L 
Sbjct: 466  FGDLKTGNIKT----------GVAQTLNRLTYSSSLSNLRRIQNPIA-ASSKATRPRNLH 514

Query: 443  PESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMI 502
               WG++CPV TP+G   GLL ++   C +     SRG   D +++  ++   + G   I
Sbjct: 515  CTQWGYICPVETPEGGSIGLLKNVALMCLM-----SRGT--DHAEVVQAVQARIDGFRTI 567

Query: 503  PSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSA-----ASVIPD--D 555
                 L  +    V  V ++G ++GV      E+++  LR  + +       S++ D  D
Sbjct: 568  ----GLEDTADVRVARVFVNGTMIGV--DRNPERLLHDLRTRRRNGELSNEVSIVRDIRD 621

Query: 556  LEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEES---QNIELIGPFEQVFME-I 611
             E+     +     P         K  +      L SE++   ++I      ++ ++E I
Sbjct: 622  REIRVFSDAGRCLRPLFVAENCRLKLRKSGMRDLLVSEKAGGKKSISWKTALKKGYVELI 681

Query: 612  RCPDGGD-------GGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAK 664
             C +                +  +H E+ P+ +L + A++ PY +HNQSPRN YQ  M K
Sbjct: 682  DCEEEDSLLIAMTPNEVEKNYYYSHCEMDPSMILGICASIIPYPNHNQSPRNTYQSAMGK 741

Query: 665  QTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDM 724
            Q MG        R D   + L  PQ P+VRT   T    ++ P G NA+VA+  Y+GY+ 
Sbjct: 742  QAMGIYASNFNMRMDTTAHVLFYPQKPLVRTKAMTYMHSNDLPAGHNAVVAISCYSGYNQ 801

Query: 725  EDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKD----AKSLHSVID 780
            ED++I+++S+V+RG      +++      ++  K D  +     +++     ++ +S +D
Sbjct: 802  EDSIIMSRSAVERGFFRSAFWRS--FKAKEERQKRDALETFENPDRELCRVKRADYSKLD 859

Query: 781  SDGLPYVGQMIHPGE---------PYCSIYDKTTNSWRTNSRKGS------ESVFVDYVA 825
            +DGL   G  +  G+         P   +   TT + +   R  S      E   VD V 
Sbjct: 860  TDGLIKPGMRVLGGDVVVGKTIPLPEADLEKLTTGNTKITKRDASITSRTTEKGVVDKVM 919

Query: 826  VDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDL 885
            + M N+    +   ++ R  + P IGDKF SRHGQKG     +   DMPF+   G+ PDL
Sbjct: 920  LTMNNNDRFTK---VKIRTIKIPNIGDKFCSRHGQKGTNGIQFRQEDMPFNR-DGIVPDL 975

Query: 886  IINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDEL 945
            IINPHA PSRMT+A L+E++A K     G  + ATPF + V               VD+ 
Sbjct: 976  IINPHAIPSRMTVAHLIETLAGKVACYKGGEVYATPFCSVV---------------VDDF 1020

Query: 946  GEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQIT 1005
            G+ L       +G E LY+G  G  L   IF GP +YQRL+H+  DK   R  G +  + 
Sbjct: 1021 GKALHALRSQRYGNECLYNGHTGLPLDHLIFFGPTFYQRLKHLSGDKIHARPRGPLQPLV 1080

Query: 1006 RQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFI 1065
            RQP +GR   GG+RFGEMERD +L++GA+  L +RL   SDY+   VC++CG++  A   
Sbjct: 1081 RQPTEGRAHEGGLRFGEMERDCMLSYGASQWLRERLFRVSDYYTVHVCNMCGTICVAD-- 1138

Query: 1066 HPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
                                +  C  C+    +  V MPY  + L  EL +M I   L  
Sbjct: 1139 ----------------TKLNRYQCKGCENDTRISQVLMPYACKLLFQELMSMTILPRLGT 1182

Query: 1126 G 1126
            G
Sbjct: 1183 G 1183


>gi|315048479|ref|XP_003173614.1| DNA-directed RNA polymerase III subunit RPC2 [Arthroderma gypseum CBS
            118893]
 gi|311341581|gb|EFR00784.1| DNA-directed RNA polymerase III subunit RPC2 [Arthroderma gypseum CBS
            118893]
          Length = 1210

 Score =  358 bits (918), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 203/517 (39%), Positives = 280/517 (54%), Gaps = 59/517 (11%)

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH EI P  +L  VA L PY  HNQSPRN YQC M KQ +G        R D  LY +  
Sbjct: 728  THLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYAMVY 787

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
            PQ P+V+T T      D+ P G NA+VAV++Y+GYD+EDA++LNK SVDRG    Q+++ 
Sbjct: 788  PQKPMVKTRTIELTNYDKLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRK 847

Query: 748  ETIDLSDDGNKV-DRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN 806
             + +L    N   DR     R N  +   H ++D+DGL  VG+ + PGE Y  I  +T +
Sbjct: 848  YSANLKSYSNGTKDRLVGPTRENGVSIRKHGLLDNDGLAAVGEKVSPGEVY--INKETPD 905

Query: 807  SWRTNSRKGSES-------------VFVDYVAVD---MKNSKNLPQKANIRFRHTRNPII 850
            +  ++   GS++                DY  +D   +  ++   Q   ++ R TR P +
Sbjct: 906  NALSSGITGSDAGLPVKYNPTPQTYKLPDYSYIDKVMISTTEGESQLIKVQTRQTRRPEV 965

Query: 851  GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGG 910
            GDKFSSRHGQKGV   +    DMPF+  TG+ PD+I+NPH FPSRMT+  +LE VA K G
Sbjct: 966  GDKFSSRHGQKGVVGIIAEQADMPFTD-TGLVPDIIMNPHGFPSRMTVGKMLELVAGKAG 1024

Query: 911  SLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTE 970
             + G+F   TPF  S                V+E+  +L   GF+Y G + L SG+ G  
Sbjct: 1025 IVSGQFGYGTPFGGSP---------------VEEMSAILVNHGFSYGGKDYLTSGITGEP 1069

Query: 971  LTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLA 1030
            LT  +F GP+YYQ+L+HMV DK   R+ G    +TRQP +GR R GG+R GEMERD L+A
Sbjct: 1070 LTYYVFTGPIYYQKLKHMVQDKMHSRARGPRATLTRQPTEGRSRDGGLRLGEMERDCLIA 1129

Query: 1031 HGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCH 1090
            +G + LL +RL   SD H  DVC  CG +  + +                        C 
Sbjct: 1130 YGTSQLLLERLMISSDRHEVDVCESCGFMGYSGW------------------------CQ 1165

Query: 1091 ACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
             C++S G+  + +PY  + L  EL +MN+   L+L D
Sbjct: 1166 RCKSSAGVVKMVIPYAAKLLVQELFSMNVVARLRLQD 1202



 Score = 90.5 bits (223), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 102/447 (22%), Positives = 192/447 (42%), Gaps = 56/447 (12%)

Query: 36  DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
           + CR   ++Y   ++ D  F+Y+     V R     G+ PVML++ +C L    ++++ +
Sbjct: 165 NECRLRDMTYAAPILVD--FEYVRGRQRVKRNGTAIGRMPVMLRSSKCVLSNKSAREMYT 222

Query: 96  LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
           L E   + GGYFI+NG E+    VIL ++    + V      ++E            RK 
Sbjct: 223 LHECPLDPGGYFIVNGTEK----VILVQEQLSKNRVIVETDPKKEIVQASVTSSSHERKS 278

Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
           +S + +K      G + L   +   +  +P+ I+LKA+   +D E+   L    D +Y+ 
Sbjct: 279 KSYIIMK-----KGRIYLRHNVLNDD--IPIVILLKAMGIQSDKEML-LLVAGVDMEYQ- 329

Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEH---------FQPVIDGLQSES 266
                      E   I   E   L++ T+ Q L+++G           F P      +E+
Sbjct: 330 -----------EDFAINFEEAVKLNIYTQQQALEYLGARIKINRKASGFGPARRNYVAEA 378

Query: 267 YYAVAETVIRDYIFVHLNDNNDKFNLL--IFMLQKLFSLVDHTSVSDNPDSLQNQEILLP 324
             A++  +I     V + D N +   L    M +++       S+ D+ D + N+ + L 
Sbjct: 379 IEAISSVIIS---HVQVQDMNFRPKALYVTHMARRVLMAKLDPSLVDDRDYVGNKRLELA 435

Query: 325 GHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIET 384
           G L+ +  ++  + +    K  I D++     + + F+   +  +   + ++ +  +I T
Sbjct: 436 GQLLALLFEDLFKKFCFDIKMNI-DKVLKKPVRTEAFDAYPVVAIHGNHITQGMNRAIAT 494

Query: 385 ---MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRK 440
               LK  R+         +RAG T    RL+++  +     +   + F   R  S  R 
Sbjct: 495 GNWSLKRFRM---------ERAGVTHVLSRLSYIAALGMMTRI--SSQFEKTRKVSGPRA 543

Query: 441 LLPESWGFLCPVHTPDGEPCGLLNHMT 467
           L P  +G LC   TP+GE CGL+ ++ 
Sbjct: 544 LQPSQFGMLCTSDTPEGEACGLVKNLA 570


>gi|15920466|ref|NP_376135.1| DNA-directed RNA polymerase subunit B [Sulfolobus tokodaii str. 7]
 gi|15621249|dbj|BAB65244.1| DNA-directed RNA polymerase subunit B [Sulfolobus tokodaii str. 7]
          Length = 1126

 Score =  358 bits (918), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 333/1210 (27%), Positives = 520/1210 (42%), Gaps = 199/1210 (16%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMFDH------------CRQAKISYTGKLMADV--- 53
            F  LR LVR H++SF+  L   L ++ D              +  KI Y    + +    
Sbjct: 15   FFKLRGLVRQHLDSFNDFLRNKLQQIIDEQGEIITEIPGLKIKLGKIRYDRPGIRETDKG 74

Query: 54   ---EFQYLDA-----------------------GSPVVRERFNFGQFPVMLKTRRCHLQG 87
               E   L+A                       G P+       G  P+MLK+       
Sbjct: 75   PPKELTPLEARLRNLTYAVPLYLTMIPIENNIEGEPI---EVYIGDLPIMLKSIADPTSN 131

Query: 88   ADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAV 147
                +L+ + E+  + GGYFI+NG E+V    I+ +++   + V   +       T  A 
Sbjct: 132  MTYDELIKIGEDPKDPGGYFIVNGTEKV----IVAQEDLATNRVLVDYGKSGSNITHVAK 187

Query: 148  VIRCVRKDQSSVTLKLYYLLNGSVRLGFW-LQGKEYLLPVGIVLKALVDTNDLEIFNHLT 206
            +       +  V ++   L + S+++ F  + GK   +P  I+++AL  T D +I     
Sbjct: 188  ITSAAAGYRVQVVIE--RLKDSSIQVSFATVPGK---IPFVIMMRALGFTTDKDIV--YA 240

Query: 207  CCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSES 266
               D + + E              ++ +  Q  S+TT    L  IG     +  G + E+
Sbjct: 241  VSLDPEIQNE--------------LLPSLEQASSITTVEDALDFIGNR---IAIGQKREN 283

Query: 267  YYAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEIL 322
                AE +I  Y   H+     D   K   L   + KL  L       D+ D   N+ + 
Sbjct: 284  RIQRAEQIIDKYFLPHIGTSPEDRKKKGYYLAAAVNKLLELYLGRRQPDDKDHYANKRVR 343

Query: 323  LPGHLITIYLKEKLEDWLRKGKKLIQ--DEIENNGKKFDFFNLANIKKVMEKNPSKQIGT 380
            L G L T   +   + ++   K L+   ++ +  G++     L     + E+        
Sbjct: 344  LAGDLFTSLFRVAFKAFV---KDLVYQLEKAKVRGRRLSLTALVRADIITERV------- 393

Query: 381  SIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFA-GLRTTSVR 439
                     R A  TG  +  R G +   +R N+L  +S  R V   +S A G      R
Sbjct: 394  ---------RHALATGNWVGGRTGVSQLLDRTNWLSMLSHLRRVV--SSLARGQPNFEAR 442

Query: 440  KLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGV 499
             L    WG +CP  TP+G   GL+ ++    +V+   +            +SI +V+   
Sbjct: 443  DLHGTQWGRMCPFETPEGPNSGLVKNLALLAQVSVGINE-----------SSIEKVIYEQ 491

Query: 500  GMIPSLPKLVKSGPPAVLS-------VLLDGRVVGVIPS-SEIEKVVAHLRRLKVSAASV 551
            G+I     + +      ++       V L+GR++G  P   E+ + +  LRR     +  
Sbjct: 492  GVISQEELIDRLSAEEDINKYLNWSKVYLNGRLLGYYPDGKELAEKIRELRR-----SGK 546

Query: 552  IPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNIS--LPSEESQNIELIGPFEQVFM 609
            I D++ V ++          +++     +  RP+  +    P     +IE +   E  F 
Sbjct: 547  ISDEVNVAHIVTEYINE---VHINCDGGRVRRPLIIVKDGKPLVSEDDIEKLRKGEITFD 603

Query: 610  E------IRCPDGGDGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQS 653
            +      I   D  +    NA+ A          TH EI P  +L + A++ PY +HNQS
Sbjct: 604  DLVKQGKIEFLDAEE--EENAYIALNPQDLTKDHTHLEIWPPAILGITASIIPYPEHNQS 661

Query: 654  PRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAI 713
            PRN YQ  MAKQ +G      + R D + + L  PQ P+V T      G ++ P G NAI
Sbjct: 662  PRNTYQSAMAKQALGLYAANYQLRTDTRAHLLHYPQKPLVGTKILDIIGYNDRPAGNNAI 721

Query: 714  VAVLAYTGYDMEDAMILNKSSVDRGMCHG---QIYQTETIDL----------SDDGNKVD 760
            +AV++YTGY+MEDA+I+NKSSV+RGM      ++Y TE +             + G K  
Sbjct: 722  LAVMSYTGYNMEDAIIMNKSSVERGMYRSTFFRLYSTEELKYPGGQEDKIMKPEPGTKGY 781

Query: 761  RGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPG---EPYCSIYDKTTNSWRTNSRKGSE 817
            +G + +R  +D   +   ++  G   +   + P    + +  +  + +    +   +  E
Sbjct: 782  KGNEYYRLLEDNGIVSPEVEVKGGDVLIGKVSPPRFLQEFKELSPEQSKRDTSIVTRHGE 841

Query: 818  SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
               VD V V   +  N  +   +R R  R P IGDKF++RHGQKGV   L    DMP++ 
Sbjct: 842  MGIVDLVLVTESSEGN--KLVKVRVRDLRIPEIGDKFATRHGQKGVIGMLIDQADMPYT- 898

Query: 878  VTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDE 937
            V G+ PD+I+NPHA PSRMTI  ++E++A K  +L GK +DATPF  S            
Sbjct: 899  VKGVVPDIILNPHALPSRMTIGQIMEALAGKYVALTGKPVDATPFIES------------ 946

Query: 938  SKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRS 997
                ++E+ + +R  G    G EV+Y G  G +L   I  G VYYQ+L HMV+DK   R+
Sbjct: 947  --PPLEEIRKGIRESGLLPDGTEVVYDGRTGQKLKGRILFGIVYYQKLHHMVADKMHARA 1004

Query: 998  TGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCG 1057
             G +  +TRQP +GR R GG+RFGEMERD L+  G A L+ DRL   SD     VC  CG
Sbjct: 1005 RGPVQILTRQPTEGRAREGGLRFGEMERDCLIGFGTAMLIKDRLLDNSDKATIYVCDKCG 1064

Query: 1058 SVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAM 1117
             +                      RA  K  C     +  +  V + Y F+ L  EL +M
Sbjct: 1065 YIGWYD------------------RARNKYVCPIHGENANLYPVTVSYAFKLLLQELMSM 1106

Query: 1118 NIKITLQLGD 1127
             I   L LGD
Sbjct: 1107 VISPRLVLGD 1116


>gi|145592515|ref|YP_001154517.1| DNA-directed RNA polymerase subunit B [Pyrobaculum arsenaticum DSM
            13514]
 gi|145284283|gb|ABP51865.1| DNA-directed RNA polymerase, subunit B' / DNA-directed RNA
            polymerase, subunit B' [Pyrobaculum arsenaticum DSM
            13514]
          Length = 1127

 Score =  358 bits (918), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 260/776 (33%), Positives = 380/776 (48%), Gaps = 105/776 (13%)

Query: 390  RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT---SVRKLLPESW 446
            R A  TG  +  + G +   +R N+L  +S+ R V    S    RT      R L P  W
Sbjct: 416  RQALATGNWVGGKTGVSQILDRTNYLSTLSYLRRVVSSLS----RTQPHFEARDLHPTQW 471

Query: 447  GFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLP 506
            G LC V TP+G+  GL+ ++     + +  D      D  +M       L+  G++P L 
Sbjct: 472  GRLCAVETPEGQNVGLVKNLALLAEITTGVDEN----DVEQM-------LLQQGVVPIL- 519

Query: 507  KLVKSGPPAVLSVLLDGRVVGVIPS-SEIEKVVAHLRRLKVSAASVIPDDLEVGYVP--- 562
            K  + G      V L+GR++G+ P   E+ K V  LRR        I D++ + Y+    
Sbjct: 520  KAREEGVRGA-EVYLNGRLIGIHPEPEELVKTVRSLRR-----QGKISDEINIAYLNGVV 573

Query: 563  --LSLGGAY--PGLYLFTSPPKFVRPVRNISLPSEESQN-------IELIGPFEQVFMEI 611
               S GG    P L +     K  + +       E + +       +E +   E+    I
Sbjct: 574  YVNSDGGRIRRPLLVVEDGKLKLTKDIVERVKRGELTWDDLLKMGVVEYLDADEEENAHI 633

Query: 612  RCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSV 671
                 GD         TH EI P+ +L  +A++ P+ +HNQSPRN Y+  MAKQ++G   
Sbjct: 634  AVDPEGDLSN-----YTHVEIIPSSILGAIASIIPFLEHNQSPRNQYEAAMAKQSLGLPQ 688

Query: 672  QALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILN 731
                ++ D + + L  P+ PIV T      G  + P G NA+VA+L YTGY++EDA+ILN
Sbjct: 689  SNFLYKLDSRGHMLYYPERPIVTTRGLELVGYSKRPAGQNAVVALLTYTGYNIEDAVILN 748

Query: 732  KSSVDRGMCHGQIYQT-------------ETIDLSDDGNKVDRGQKLFRR-NKDAKSLHS 777
            K+SV+RGM     Y+T             + I++ D   K  RG + +   ++D  +   
Sbjct: 749  KASVERGMFRSVFYRTYETEEQRYPGGEEDKIEIPDSSVKGYRGPEAYSHLDEDGIAPPE 808

Query: 778  VIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNS----RKGSESVFVDYVAVDMKNSKN 833
            V  S     +G+   P   Y ++  +     R ++    R+G + + VD V V      N
Sbjct: 809  VYVSSSEVLIGKT-SPPRFYTTLETERILKERRDASVAVRRGEKGI-VDRVIVTESPEGN 866

Query: 834  LPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFP 893
              +   +R R  R P +GDKF+SRHGQKGV   L    DMPF+   G+ PD+I+NPHA P
Sbjct: 867  --KLVKVRLRELRIPELGDKFASRHGQKGVVGMLLRQEDMPFTE-EGIVPDIIVNPHALP 923

Query: 894  SRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCG 953
            SRMT+A LLES+A K G+  G  +DATPF           G  E     ++L ++L   G
Sbjct: 924  SRMTVAQLLESMAGKVGAATGNLVDATPFE----------GVKE-----EDLRKLLLKLG 968

Query: 954  FNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRK 1013
            + + G EV+YSG+ G +L  +IFIG VYYQ+L HMV+DK   R+ G +  +TRQP +GR 
Sbjct: 969  YKWDGKEVMYSGITGEKLVADIFIGIVYYQKLHHMVADKIHARARGPVQILTRQPTEGRS 1028

Query: 1014 RGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCG--SVLTATFIHPQKRA 1071
            R GG+R GEMERD L+AHGA+ LL++RL   SD +   VC LCG  + L A    P+   
Sbjct: 1029 REGGLRLGEMERDVLIAHGASALLYERLVESSDKYTMYVCELCGLPAYLDAKSNKPK--- 1085

Query: 1072 IREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
                             C     +     V +PY F+ L  EL A+ I   L+L +
Sbjct: 1086 -----------------CPIHGDTGQFAKVTVPYAFKLLLQELIALGIYPKLELSE 1124



 Score = 48.5 bits (114), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 1/62 (1%)

Query: 57  YLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVF 116
           Y+D   P   E F  G+ P+M+K++RC+L      +     E+  + GGYFI+NG ERV 
Sbjct: 117 YVD-DEPYATETFYIGELPIMVKSKRCNLTRLRPSEYPKRFEDPQDFGGYFIINGSERVI 175

Query: 117 RS 118
            S
Sbjct: 176 IS 177


>gi|323447819|gb|EGB03728.1| hypothetical protein AURANDRAFT_39265 [Aureococcus anophagefferens]
          Length = 1222

 Score =  357 bits (917), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 321/1191 (26%), Positives = 519/1191 (43%), Gaps = 198/1191 (16%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR    +Y+  +  DV  +Y      V  +R   G+ P+ML++ +C L      +L +LK
Sbjct: 93   CRLRDCTYSAPIFVDV--RYRRGPQIVTTKRVPIGRIPIMLRSSQCVLHNKSWSQLEALK 150

Query: 98   EEAAEMGGYFILNGLERVF---------RSVI-LPKQNYPMSMVRSSFRDRREGYTDKAV 147
            E   + GGYF++ G+E+V          R +I L  + +  + + SS  +R+        
Sbjct: 151  ECPHDPGGYFVVKGVEKVILMQEQLSKNRMIIELDAKGFVCATITSSTHERKS------- 203

Query: 148  VIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTC 207
              RC    + +      YL + ++       G +  +PV ++LKA+   +D EI   L  
Sbjct: 204  --RCSIVVKPTTHGHRVYLKHNTL-------GDD--IPVVVILKAMGMESDQEI-AELVS 251

Query: 208  CYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQP-----VIDGL 262
              D K       +    V+   +   A V+     T+ Q L+++G+  +       +DG 
Sbjct: 252  SADLK-------IADIFVNSMEEPCAAHVK-----TQKQALEYVGQAIRAKQKAQSVDGS 299

Query: 263  QSE-------------------SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSL 303
            +S+                   ++  ++   + DY FV       K   +  + +++ + 
Sbjct: 300  RSQYLPHSRRPVSIEDEAREVLAHVVLSHVPVEDYDFV------AKRTYIGHVTRRVLAA 353

Query: 304  VDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDW---LRKGKKLIQDEIENNGKKFDF 360
                S+ D+ D   N+ + L G L+++  ++  + +   L++   L+  + +N    FD 
Sbjct: 354  SLDNSLLDDKDYYGNKRLELAGQLLSLLFEDLFKRFNADLKRSADLVLQK-QNRTAVFDI 412

Query: 361  FNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQT-GLDLQQRAGYTVQAERLNFLRFIS 419
                 +K  + +  +  I       + TG    +   +D   RAG T    RL+++  I 
Sbjct: 413  -----VKSTVWR--TDTISQGFVHAISTGNWVLKRFKMD---RAGVTQVLSRLSYVSAIG 462

Query: 420  FFRAVHRGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDS 478
                V+  + F   R TS  R L    WG LCP  TP+GE CGL+ ++     V +  + 
Sbjct: 463  MMTRVN--SQFEKTRKTSGPRALQLSQWGMLCPADTPEGETCGLVKNLALLAHVTTDAEV 520

Query: 479  RGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVV 538
                R    +    L  L G  +         S P A L V L+G V+G        K+ 
Sbjct: 521  EKTKRSCFDLGVEQLGYLNGAEL--------NSHPGAYL-VFLNGLVIGA--CRRPHKLA 569

Query: 539  AHLRRLKVSAASVIPDDLEVG-YVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN 597
              LR ++ S          +G +V +     +  +Y+     +  RP+   +        
Sbjct: 570  RGLRCMRRSK--------RIGEFVSVYTHTVHRAIYVACDGGRVCRPLIIATHGHSRLTA 621

Query: 598  IELIGPFEQVFMEIRCPDGGDGG--------------------------------RRNAF 625
             +L   F + +         DG                                   N F
Sbjct: 622  AQLATAFAKTYPNSNSQSKNDGDPNRLQSHASTQSVGTLDHLTTVGIIEYVDVNEENNCF 681

Query: 626  PATHE----------EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALK 675
             A  E          EI P  +L +V+ L  +  HNQSPRN YQC M KQ MG       
Sbjct: 682  IALDERELTPRHTHVEIDPVTILGIVSGLVAFPHHNQSPRNTYQCAMGKQAMGSVATNQY 741

Query: 676  FRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSV 735
             R D  LY L  PQ P+V++        D  P G NA +AV++Y+GYD+EDA++LN++S+
Sbjct: 742  ERMDSLLYSLVYPQKPMVKSRVLDLVHFDALPGGCNATLAVMSYSGYDIEDAIVLNRASL 801

Query: 736  DRGMCHGQIYQTETIDLSDDGN-KVDRGQ-----KLFRRNKDAKSLHSVIDSDGLPYVGQ 789
            DRG     + +   + +    N   DR       +LF +    +  +S +D+DG+  VG+
Sbjct: 802  DRGFMRCLVIKRHQVSIRRYANGACDRTTGPPSIELFLQGYVFR--YSALDNDGICRVGE 859

Query: 790  MIHPG------EPYCSIYDKTT-------NSWRTNSRKGSESVFVDYVAVDMKNSKNLPQ 836
             +H        E      D+ T       +++     K      VD V +    +     
Sbjct: 860  KLHDQSIMINREMPVEDRDELTPALPGRVSAFVVLHYKSPAPSVVDRVLLTANETDQFLV 919

Query: 837  KANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRM 896
            K  +  R  R P +GDKF+SRHGQKGVC  +    DMPFS  TG+ PD+I+NPH FPSRM
Sbjct: 920  K--VMVRQCRRPEVGDKFASRHGQKGVCGAIVSQEDMPFSD-TGVCPDVIMNPHGFPSRM 976

Query: 897  TIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNY 956
            T+  ++E VA K G   G+    T F    K  + D  ++ S +L+          GF+Y
Sbjct: 977  TVGKIIELVAGKCGVCSGRQAYGTAFGE--KTGSADCASEASCTLLKH--------GFSY 1026

Query: 957  HGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGG 1016
             G ++LYSG+ G  L   +F+GPV+YQ+L+HMV DK   R+ G   Q+TRQP +GR R G
Sbjct: 1027 IGKDMLYSGISGEPLRVYVFMGPVFYQKLKHMVMDKMHARARGPRAQLTRQPTEGRSRDG 1086

Query: 1017 GIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIG 1076
            G+R GEMERD L+++GAA L+ +RL   SD     VC  CG +  +T  + ++       
Sbjct: 1087 GLRLGEMERDCLISYGAANLITERLMISSDQFDVHVCEGCGLLGYSTAQNTER------- 1139

Query: 1077 GLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
                  +     C  C++++ M  + +PY  + L  EL +MN+   L+L D
Sbjct: 1140 ----IDSTFTSWCQNCRSNEQMARICIPYACKLLFQELQSMNVTPRLKLED 1186


>gi|374327622|ref|YP_005085822.1| DNA-directed RNA polymerase subunit beta [Pyrobaculum sp. 1860]
 gi|356642891|gb|AET33570.1| DNA-directed RNA polymerase subunit beta [Pyrobaculum sp. 1860]
          Length = 1127

 Score =  357 bits (917), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 273/856 (31%), Positives = 420/856 (49%), Gaps = 124/856 (14%)

Query: 311  DNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVM 370
            D+ D + N+ + L G L+T   +   + +L++ K  ++       K +    + +I+ V+
Sbjct: 354  DDKDHVANKRVRLVGDLMTQLFRTVFKQFLQELKSQLE-------KYYARGRIPHIQTVV 406

Query: 371  EKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASF 430
              +           + +  R A  TG  +  + G +   +R N+L  +S+ R V    S 
Sbjct: 407  RPD----------IITERVRQALATGNWVGGKTGVSQILDRTNYLSTLSYLRRVVSSLS- 455

Query: 431  AGLRTT---SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSK 487
               RT      R L P  WG LC V TP+G+  GL+ ++     + +  D          
Sbjct: 456  ---RTQPHFEARDLHPTQWGRLCAVETPEGQNVGLVKNLALLAEITTGVDE--------- 503

Query: 488  MRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVS 547
                + ++L G+G++P L    +    A   V L+GR++GV P+ +  ++ A +R L+  
Sbjct: 504  --GEVEQMLYGMGVVPILK--ARDEGVAGAEVYLNGRLIGVHPNPD--ELAAAVRGLRRQ 557

Query: 548  AASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVR-----NISLPSEESQNIELIG 602
                I D++ +      L G    +Y+ +   +  RP+       + L  E  + ++   
Sbjct: 558  GK--ISDEINIAV----LNGV---VYVNSDGGRIRRPLLVVEDGKLKLTKEVVERVKRGD 608

Query: 603  PFEQVFMEIRCPDGGDGGRR-NAFPAT----------HEEIHPTGMLSVVANLTPYSDHN 651
                  ++    +  D     NA  AT          H EI P+ +L  VA++ PY +HN
Sbjct: 609  LTWDDLVKTGVVEYLDADEEENAHIATDPHVDLSNYTHVEIIPSSILGAVASIIPYLEHN 668

Query: 652  QSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTN 711
            QSPRN Y+  MAKQ++G     L ++ D + + L  P+ PIV T      G  + P G N
Sbjct: 669  QSPRNQYEAAMAKQSLGLPQSNLLYKLDSRGHMLYYPERPIVTTRGLELIGYSKRPAGQN 728

Query: 712  AIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-------------ETIDLSDDGNK 758
            A+VA+L YTGY++EDA+ILNK+SV+RGM     Y+T             + I++ D   K
Sbjct: 729  AVVALLTYTGYNIEDAVILNKASVERGMFRSVFYRTYETEEQKYPGGEEDRIEIPDSSVK 788

Query: 759  VDRGQKLFRR-NKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNS----R 813
              RG + +   ++D  +   V  S     +G+   P   Y ++  +     R ++    R
Sbjct: 789  GYRGPEAYSHLDEDGIAPPEVYVSSNEVLIGKT-SPPRFYTTLEAERILKERRDASVAVR 847

Query: 814  KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDM 873
            +G   + VD V V      N  +   +R R  R P +GDKF+SRHGQKGV   L    DM
Sbjct: 848  RGERGI-VDRVIVTESPEGN--KLVKVRLRELRIPELGDKFASRHGQKGVLGMLLRHEDM 904

Query: 874  PFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDT 933
            PF+   G+ PD+I+NPHA PSRMT+A LLES+A K G+  G  +DATPF   VK+     
Sbjct: 905  PFTE-DGIVPDIIVNPHALPSRMTVAQLLESMAGKVGASTGHLVDATPF-EGVKE----- 957

Query: 934  GTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKF 993
                     ++L ++L   G+ + G EV+YSG+ G  L  +IFIG VYYQ+L HMV+DK 
Sbjct: 958  ---------EDLRKLLLKLGYKWDGKEVMYSGITGERLVADIFIGVVYYQKLHHMVADKI 1008

Query: 994  QVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVC 1053
              R+ G +  +TRQP +GR R GG+R GEMERD L+AHGA+ LL++RL   SD +V  VC
Sbjct: 1009 HARARGPVQILTRQPTEGRAREGGLRLGEMERDVLIAHGASALLYERLVESSDKYVMYVC 1068

Query: 1054 SLCG--SVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLA 1111
             LCG  + L A    P              R P  +   A Q +K    V +PY F+ L 
Sbjct: 1069 ELCGLPAYLDAKSNKP--------------RCP--IHGDAGQFAK----VVVPYAFKLLL 1108

Query: 1112 AELAAMNIKITLQLGD 1127
             EL A+ I   ++L +
Sbjct: 1109 QELIALGIYPKIELSE 1124



 Score = 49.7 bits (117), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 1/62 (1%)

Query: 57  YLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVF 116
           Y+D   P   E F  G+ P+M+K++RC+L    + +     E+  + GGYFI+NG ERV 
Sbjct: 117 YVD-DEPYATETFYIGELPIMVKSKRCNLTRLRTGEYAKRFEDPQDFGGYFIINGSERVI 175

Query: 117 RS 118
            S
Sbjct: 176 IS 177


>gi|327300783|ref|XP_003235084.1| DNA-directed RNA polymerase III [Trichophyton rubrum CBS 118892]
 gi|326462436|gb|EGD87889.1| DNA-directed RNA polymerase III [Trichophyton rubrum CBS 118892]
          Length = 1210

 Score =  357 bits (917), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 203/517 (39%), Positives = 280/517 (54%), Gaps = 59/517 (11%)

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH EI P  +L  VA L PY  HNQSPRN YQC M KQ +G        R D  LY +  
Sbjct: 728  THLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYAMVY 787

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
            PQ P+V+T T      D+ P G NA+VAV++Y+GYD+EDA++LNK SVDRG    Q+++ 
Sbjct: 788  PQKPMVKTRTIELTNYDKLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRK 847

Query: 748  ETIDLSDDGNKV-DRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN 806
             + +L    N   DR     R N  +   H ++D+DGL  VG+ + PGE Y  I  +T +
Sbjct: 848  YSANLKSYSNGTKDRLVGPTRENGVSIRKHGLLDNDGLAAVGEKVSPGEVY--INKETPD 905

Query: 807  SWRTNSRKGSES-------------VFVDYVAVD---MKNSKNLPQKANIRFRHTRNPII 850
            +  ++   GS++                DY  +D   +  ++   Q   ++ R TR P +
Sbjct: 906  NALSSGITGSDAGLPVKYNPTPQTYKLPDYSYIDKVMISTTEGESQLIKVQTRQTRRPEV 965

Query: 851  GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGG 910
            GDKFSSRHGQKGV   +    DMPF+  TG+ PD+I+NPH FPSRMT+  +LE VA K G
Sbjct: 966  GDKFSSRHGQKGVVGIIAEQADMPFTD-TGLVPDIIMNPHGFPSRMTVGKMLELVAGKAG 1024

Query: 911  SLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTE 970
             + G+F   TPF  S                V+E+  +L   GF+Y G + L SG+ G  
Sbjct: 1025 IISGQFGYGTPFGGSP---------------VEEMSAILVDHGFSYGGKDYLTSGITGEP 1069

Query: 971  LTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLA 1030
            LT  +F GP+YYQ+L+HMV DK   R+ G    +TRQP +GR R GG+R GEMERD L+A
Sbjct: 1070 LTYYVFTGPIYYQKLKHMVQDKMHSRARGPRATLTRQPTEGRSRDGGLRLGEMERDCLIA 1129

Query: 1031 HGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCH 1090
            +G + LL +RL   SD H  DVC  CG +  + +                        C 
Sbjct: 1130 YGTSQLLLERLMISSDRHEVDVCESCGFMGYSGW------------------------CQ 1165

Query: 1091 ACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
             C++S G+  + +PY  + L  EL +MN+   L+L D
Sbjct: 1166 RCKSSVGVVKMVIPYAAKLLVQELFSMNVVARLRLQD 1202



 Score = 92.0 bits (227), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 105/450 (23%), Positives = 192/450 (42%), Gaps = 62/450 (13%)

Query: 36  DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
           + CR   ++Y   ++ D  F+Y+     V R     G+ PVML++ +C L    ++++ +
Sbjct: 165 NECRLRDMTYAAPILVD--FEYVRGRQRVKRNGTAIGRMPVMLRSSKCVLSNKSAREMYT 222

Query: 96  LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
           L E   + GGYFI+NG E+    VIL ++    + V      ++E            RK 
Sbjct: 223 LHECPLDPGGYFIVNGTEK----VILVQEQLSKNRVIVETDPKKEIVQASVTSSSHERKS 278

Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
           +S + +K      G + L   +   +  +P+ I+LKA+   +D E+   L    D +Y+ 
Sbjct: 279 KSYIIMK-----KGRIYLRHNVLNDD--IPIVILLKAMGIQSDKEML-LLVAGVDMEYQ- 329

Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEH---------FQPVIDGLQSES 266
                      E   I   E   LS+ T+ Q L+++G           F P      +E+
Sbjct: 330 -----------EDFAINFEEAVKLSIYTQQQALEYLGARIKINRKASGFGPARRNYVAEA 378

Query: 267 YYAVAETVIRDYIFVHLNDNNDKFNLL--IFMLQKLFSLVDHTSVSDNPDSLQNQEILLP 324
             A++  +I     V + D N +   L    M +++       S+ D+ D + N+ + L 
Sbjct: 379 IEAISSVIIS---HVQVQDMNFRPKALYVTHMARRVLMAKLDPSLVDDRDYVGNKRLELA 435

Query: 325 GHLITIYLKEKLEDWLRK---GKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTS 381
           G L+ +      ED  +K     K+  D++     + + F+   +  +   + ++ +  +
Sbjct: 436 GQLLALL----FEDLFKKFCFDIKMNIDKVLKKPVRTEAFDAYPVVAIHGNHITQGMNRA 491

Query: 382 IET---MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS- 437
           I T    LK  R+         +RAG T    RL+++  +     +   + F   R  S 
Sbjct: 492 IATGNWSLKRFRM---------ERAGVTHVLSRLSYIAALGMMTRI--SSQFEKTRKVSG 540

Query: 438 VRKLLPESWGFLCPVHTPDGEPCGLLNHMT 467
            R L P  +G LC   TP+GE CGL+ ++ 
Sbjct: 541 PRALQPSQFGMLCTSDTPEGEACGLVKNLA 570


>gi|68300802|gb|AAY89343.1| RNA polymerase II second largest subunit [Antirrhinum majus]
          Length = 1198

 Score =  357 bits (917), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 310/1145 (27%), Positives = 497/1145 (43%), Gaps = 136/1145 (11%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAG--SPVVRERFNF-----GQFPVMLKTRRCHLQGADS 90
             R   ++Y+  L  DV  + +  G     V E   F     G+ P+ML++  C L     
Sbjct: 123  ARLRNLTYSSPLYVDVTKRVVKKGFDCEEVTETQEFAKVFIGKVPIMLRSSYCSLYHLPE 182

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L+ L E   + GGYFI+NG E+    V++ ++    + V   F+ R+         +R
Sbjct: 183  KDLMDLGECPYDQGGYFIVNGSEK----VLIAQEKMSTNHV-YVFKKRQPNKYSYVAEVR 237

Query: 151  CVRKDQSSVTLKLYYLL---NGSVR--LGFWLQGK-EYL---LPVGIVLKALVDTNDLEI 201
             + + Q+     ++  +   +G+ R   G ++     Y+   +P+ I+ +AL    D +I
Sbjct: 238  SIAESQNKAPSGMFVRMLSRSGAKRGTSGQYIYATLPYIRTEVPIIIIFRALGFVADKDI 297

Query: 202  FNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDG 261
              H+  CYD    K         + E ++  L E     +  +   L +IG+    +  G
Sbjct: 298  LEHI--CYDFNDSK---------MMELLRPFLEEA--FVIQNQQVALDYIGKRGSTI--G 342

Query: 262  LQSESYYAVAETVIRDYIFVHLND----NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQ 317
            +  +     A  +++  +  H+         K     +++ +L          D+ D   
Sbjct: 343  VTRDKRIKYAREILQREMLPHVGTEEYCETKKAYYFGYIINRLLLCALGRRPEDDRDHYA 402

Query: 318  NQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQ 377
            N+ + L G L+    +       R  +  +Q  ++ NGK        N++  ++   +K 
Sbjct: 403  NKRLDLAGPLLAGLFRMLFRKLTRDVRSYVQKCVD-NGKD------VNLQFAIK---AKT 452

Query: 378  IGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS 437
            I + ++  + TG            RAG +    RL +   +S  R ++      G +   
Sbjct: 453  ITSGLKYSIATGNWGQANAAG--TRAGVSQVLNRLTYASTLSHLRRLNSPIGREG-KLAK 509

Query: 438  VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLI 497
             R+L    WG +CP  TP+G+ CGL+ ++     + +   +   I +F    ++     I
Sbjct: 510  PRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYI-TVGSAANPILEFLDEWSTENFEEI 568

Query: 498  GVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSE-IEKVVAHLRR-LKVSAASVIPDD 555
               +IP   K           + ++G  +G+  + E + + +  LRR + V+    I  D
Sbjct: 569  SPAVIPQATK-----------IFVNGNWIGIHRNPELLVRTLRQLRRQVDVNTEVGIIRD 617

Query: 556  LEVGYVPL--SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------IELI 601
            + +  + L    G     L++       ++    ++L   ES +            +E +
Sbjct: 618  IHLKELRLYTDYGRCSRPLFIVDKQRLVIKKKDILALQQRESADEYGWHDLVRNGSVEYV 677

Query: 602  GPFEQ----VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQSPR 655
               E+    + M I            A+  T  H EIHP+ +L V A++ P+ DHNQSPR
Sbjct: 678  DTEEEETTMISMTINDLINSRHNPDAAYSETYTHCEIHPSLVLGVCASIIPFPDHNQSPR 737

Query: 656  NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
            N YQ  M KQ MG  V   + R D   Y L  PQ P+V T         + P G NAIVA
Sbjct: 738  NTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA 797

Query: 716  VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSL 775
            +  Y+GY+ ED++I+N+SS+DRG      +++   +    G  V        R+      
Sbjct: 798  IACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGCPNRDNTMGMR 857

Query: 776  HSVID---SDGLPYVGQMIH----------PGEPYCSIYDKTTNSWRTNSRKGSESVFVD 822
            H   D    DG    G  +           P  P  +   + T    ++S + SES  VD
Sbjct: 858  HGSYDKLEDDGFAPPGTRVSGDDVIIGKTTPFTPDENQNIRFTRQDHSSSLRHSESGVVD 917

Query: 823  YVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMR 882
             V +   N+  L +   +R R  R P IGDKFSSRHGQKG     +   DMP+S + G+ 
Sbjct: 918  QVLL-TTNADGL-RFVKVRIRSVRIPQIGDKFSSRHGQKGTIGMTYTQDDMPWS-IEGIT 974

Query: 883  PDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLV 942
            PD+I+NPHA PSRMTI  L+E +  K  +  GK  DATPF +                 V
Sbjct: 975  PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT---------------V 1019

Query: 943  DELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMD 1002
            D + + L  CG+   G E +Y+G  G  LT  IF+GP YYQRL+HMV DK   R  G + 
Sbjct: 1020 DNISKALHKCGYQMRGFETMYNGHTGRPLTSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQ 1079

Query: 1003 QITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTA 1062
             +TRQP +GR R GG+RFGEMERD ++AHGAA+ L +RL   SD +   VC  CG +  A
Sbjct: 1080 ILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLMGIA 1139

Query: 1063 TFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKIT 1122
                                      C +C+    +  + +PY  + L  EL +M I   
Sbjct: 1140 NL------------------KKHSYECRSCKNKTDIVQIYIPYACKLLIQELMSMAIAPR 1181

Query: 1123 LQLGD 1127
            L   D
Sbjct: 1182 LLTND 1186


>gi|313227690|emb|CBY22838.1| unnamed protein product [Oikopleura dioica]
          Length = 1187

 Score =  357 bits (917), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 316/1157 (27%), Positives = 490/1157 (42%), Gaps = 166/1157 (14%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSP----VVRERFNFGQFPVMLKTRRCHLQGAD 89
            M +  R   ++Y   L  D+    + +  P       E+   GQ P+ML++  C L G  
Sbjct: 108  MPNEARLRNLTYCAPLYVDINRTTIRSDDPRPHEEKHEKIFIGQIPIMLRSEYCLLSGLS 167

Query: 90   SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
             + L  L E   + GGYF++NG E+V    ++ ++    + V   F  +   Y   A   
Sbjct: 168  DRDLTELNECPLDPGGYFVINGSEKV----VIAQEKMANNTV-YVFEKKDSKYELTAECR 222

Query: 150  RCVR---KDQSSVTLKLYYLLNGS--------VRLGFWLQGKEYLLPVGIVLKALVDTND 198
             C+    +  S++ + L     G+         R+   L   +   P+ IV +AL   +D
Sbjct: 223  SCLENSSRPTSTIWINLLARSGGTGVKKSAIGRRIAAILPYVKQDTPIIIVFRALGFVSD 282

Query: 199  LEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV 258
             +I  H+   +D+           P + E VK  + E     +      L  IG+  +  
Sbjct: 283  RDILEHIVYDFDD-----------PDMMEMVKPSIDEA--FVIQEEAVALDFIGK--RGA 327

Query: 259  IDGLQSESYYAVAETVIRDYIFVHLNDN----NDKFNLLIFMLQKLFSLVDHTSVSDNPD 314
              G+  E     A+ +++  +  H+  +      K   L +M+ ++          D+ D
Sbjct: 328  RPGVTREKRMKYAKEILQKELLPHVGISEYCETKKAYFLGYMVNRILQAGLGRRGEDDRD 387

Query: 315  SLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNP 374
               N+ + L G L+    +   +   +  +   Q EIE  GK  +   L  IK       
Sbjct: 388  HYGNKRMDLAGPLLAFLFRSLFKKLTKDARIAAQKEIEK-GKPMNV--LTAIK------- 437

Query: 375  SKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLR 434
            +K I   ++  L TG    Q     Q R G +    RL +   +S  R ++      G +
Sbjct: 438  TKIITDGLKYSLATGNWGDQQKAS-QCRPGVSQVLNRLTYASSLSHLRRLNSPVGRDG-K 495

Query: 435  TTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILR 494
                R+L    WG +CP  TP+G   GL+ ++     + SY              + IL 
Sbjct: 496  LAKPRQLHSTQWGMVCPAETPEGHAVGLVKNLA----LMSYIS-------VGSQPSPILE 544

Query: 495  VLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPD 554
             L    M  +L ++  +       + ++G  VG+    + E+++  LR+L+         
Sbjct: 545  FLEEWSM-ENLEEITPNSISDATKIFVNGCWVGI--HRDPEQLMGTLRKLRRQM------ 595

Query: 555  DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNIS-------------LPSEESQN---- 597
            D+ V  V +        + ++T   +  RP+  +              L   E  N    
Sbjct: 596  DIIVSEVSMVRDIRNREIRIYTDAGRICRPLLIVEDQRLLLKKDHLAMLKDPEYSNYSWT 655

Query: 598  -------IELIGPFEQ-VFMEIRCPDGGDGGRRNAF--PATHEEIHPTGMLSVVANLTPY 647
                   +E I   E+   M    PD        A+    TH EIHP  +L V A++ P+
Sbjct: 656  ELIKAGVVEYIDTLEEETIMCAMTPDEVKKTDEMAYCRSYTHCEIHPAMILGVCASIVPF 715

Query: 648  SDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYP 707
             DHNQSPRN YQ  M KQ +G  V   + R D        PQ P+  T +       E P
Sbjct: 716  PDHNQSPRNTYQSAMGKQAVGVFVTNFQIRMDTMGNICFYPQKPLCVTRSMEYLRFSELP 775

Query: 708  TGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIY--------QTETIDLSDDGNKV 759
             G N IVA+  YTGY+ ED++I+N +S+DRG  H  IY          + +D  +   K 
Sbjct: 776  AGINTIVALSCYTGYNQEDSLIMNMASLDRGF-HRSIYYRGYRDTENKKILDPEETFEKP 834

Query: 760  DRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGE-----------------PYCSIYD 802
            DR      R+    +++  ++ DGL   G  I   +                 P    Y 
Sbjct: 835  DRATTQGMRH----AMYDKLEDDGLIAPGTRISGDDVMIGKTIALQDGDDALDPTAKKYT 890

Query: 803  KTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKG 862
            K   S      K +E   +D V V +  +++  +   IR R  R P +GDKF+SRHGQKG
Sbjct: 891  KKDASLFA---KPTEKGIIDSVMVTI--NEDGYKFVKIRLRSVRIPEVGDKFASRHGQKG 945

Query: 863  VCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPF 922
                +    DM F+   GM+PDLI+NPHA PSRMTI  L E + +K G++ G+  DATPF
Sbjct: 946  TNGIMLRCEDMLFTP-DGMQPDLIVNPHAIPSRMTIGHLFECLTSKVGAIKGEIGDATPF 1004

Query: 923  ANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYY 982
              SV               V ++ ++L    +   G EVLYSG  G ++  ++F GP YY
Sbjct: 1005 NPSVT--------------VQKVSDILHEYEYQQRGNEVLYSGFTGRKMNTQVFFGPTYY 1050

Query: 983  QRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLH 1042
            QRL+HMV+DK   R+ G +  + RQP++GR R GG+RFGEMERD  +AHGA+  L +RL 
Sbjct: 1051 QRLKHMVNDKIHSRARGPVQLLNRQPMEGRSRDGGLRFGEMERDCQIAHGASQFLKERLF 1110

Query: 1043 TCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVA 1102
              SD +   VC+LCG +  A                          C +C     +  V 
Sbjct: 1111 EVSDPYRVHVCNLCGLICVANL------------------TSNSFECRSCSNKTNISQVR 1152

Query: 1103 MPYVFRYLAAELAAMNI 1119
            MPY  + L  EL +M I
Sbjct: 1153 MPYACKLLFQELMSMQI 1169


>gi|159471568|ref|XP_001693928.1| DNA-directed RNA polymerase III, subunit 2 [Chlamydomonas
            reinhardtii]
 gi|158277095|gb|EDP02864.1| DNA-directed RNA polymerase III, subunit 2 [Chlamydomonas
            reinhardtii]
          Length = 1161

 Score =  357 bits (917), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 342/1233 (27%), Positives = 517/1233 (41%), Gaps = 224/1233 (18%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMF--------------------------------- 35
            F  +R LV+ H++SF+Y+L+  L ++                                  
Sbjct: 38   FLKVRGLVKQHLDSFNYLLNSELRKIVAANEKVTCDTDPNFYLKYTNIYVGGPSVDEDMV 97

Query: 36   ------DHCRQAKISYTGKLMADVEFQYLDAGSPVVRER-------FNFGQFPVMLKTRR 82
                    CR    +Y+  +  D+E+     G  +V +R        + G+ P+ML+  R
Sbjct: 98   QVGTTPQQCRLRDATYSAPITVDIEYT---RGKEIVVKRGRGGVGAVSIGRMPLMLRCDR 154

Query: 83   CHLQGADSQKLVSLKEEAAEMGGYFILNGLERVF---------RSVI-LPKQNYPMSMVR 132
            C L   +  +L  L E   + GGYFI+ G E+V          R +I     N  M+ V 
Sbjct: 155  CVLYNKNEAQLAQLGECPLDPGGYFIVRGTEKVILIQEQLSKNRIIIDTDSHNEVMASVT 214

Query: 133  SSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKA 192
            SS  +R               K ++++                  +GK YL       K 
Sbjct: 215  SSTHER---------------KSKTNIVFS---------------KGKIYL-------KH 237

Query: 193  LVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIG 252
                +D+ IF  L     E  ++   AVG+  ++  +   + E + L + T++Q L ++G
Sbjct: 238  NAFQDDVNIFVVLKAMGCESDQEAVQAVGAAALAALLVPSVQEAKGLGVFTQMQALDYLG 297

Query: 253  EHFQ--PVIDG---LQSESYYAVAETVIRDYIFVHLNDNNDKFN-----LLIFMLQKLFS 302
               +  P   G    + +S    A  V+   +  H+     +F      + + + + L++
Sbjct: 298  GKLKASPKFGGGDQKRRKSKVDEARDVLAHVVLCHVPVPRYQFAQKIAYVAVMVRRMLYA 357

Query: 303  LVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFN 362
            ++D   + D  D   N+ + L G L+++ L E L   L    K   D + +   +   F+
Sbjct: 358  VLDPACIDDR-DYYGNKRLELAGGLLSL-LFEDLFKRLNSDIKRQADAVLSKANRATQFD 415

Query: 363  LANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFR 422
            +A   +      +  I   +E+ L +G    +      +R G T    RL+F+  +    
Sbjct: 416  VAKAIR------TDTITYGLESALSSGNWIIRRFR--MERKGVTQVLSRLSFIAAMGMM- 466

Query: 423  AVHRGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGN 481
                 + F   R  S  R L P  WG LCP  TP+GE CGL+ ++     V +  +    
Sbjct: 467  -TRMTSQFEKTRKVSGPRALHPSQWGMLCPADTPEGESCGLVKNLALMTHVTTDEEEGPL 525

Query: 482  IRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHL 541
            IR         L V++G   I ++      G    L V L+G +VGV       ++V   
Sbjct: 526  IR---------LLVMLGTEPITAIAPAEMHGHGGAL-VFLNGTLVGV--HRRPHRLVREA 573

Query: 542  RRLKVSA--ASVIPDDLE--VGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEE--- 594
            R L+ +      +   L+    Y+    G     L +  +    VR      L S E   
Sbjct: 574  RELRRAGHLGEFVHVHLQGDACYISCDGGRVCRPLIICDAGVPRVRQEHITKLRSGERCE 633

Query: 595  ------------------SQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTG 636
                               +N+ LI  +E+   ++                TH EI P  
Sbjct: 634  WGFPDFLARGLLEYLDVNEENVSLIALYEKDCNKL---------------TTHLEIEPFT 678

Query: 637  MLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTN 696
            ++ VV+ L P+  HNQSPRN YQC M KQ MG        R D  LY L  PQ P++ + 
Sbjct: 679  IMGVVSGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQMSRMDSLLYLLVYPQRPLLTSR 738

Query: 697  TYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDG 756
            T    G D+   G NA VAV++Y+GYD+EDA+++NK S+DRG     + +     L    
Sbjct: 739  TIELVGFDKLGAGQNASVAVMSYSGYDIEDAIVMNKYSLDRGFGRCIVLKKYGASLRKYA 798

Query: 757  NKV-DR--GQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSI------------- 800
            N+  DR          K       ++D DG+  VG  I PG+ Y ++             
Sbjct: 799  NRASDRIVAPLPLPGQKAVAPRFRLLDRDGIACVGDYILPGDVYINMQRPSNTRDPLPAA 858

Query: 801  ------YDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKF 854
                  Y  +  SW++      E   VD V +   +  +   K  I  RHTR P +GDKF
Sbjct: 859  NMPDAFYRPSPMSWKSTPAMAGERCIVDKVQITANDESHYSIKVLI--RHTRRPELGDKF 916

Query: 855  SSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHG 914
            SSRHGQKGV   +    D PFS   G+ PDLI+NPH FPSRMT+  ++E + +K     G
Sbjct: 917  SSRHGQKGVVGNIVRQEDFPFSE-RGVCPDLIMNPHGFPSRMTVGKMIELLGSKAAVSCG 975

Query: 915  KFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCE 974
            +F   T F         D   D S +LV          GF+Y G + L SG+ G  L   
Sbjct: 976  RFHYGTAFGEP--SNLADKVEDISATLVRH--------GFSYSGKDFLTSGITGEPLEAY 1025

Query: 975  IFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAA 1034
            IF+GPVYYQ+L+HMV DK   R+ G    +TRQP +GR R GG+R GEMERD L+A+GA+
Sbjct: 1026 IFMGPVYYQKLKHMVLDKMHARARGPRVVLTRQPTEGRSRDGGLRLGEMERDCLIAYGAS 1085

Query: 1035 YLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQT 1094
             LL +RL   SD        +C  +L     H      R     P  R           T
Sbjct: 1086 MLLLERLMISSDQFEVRA-RVCVGLLGWWDAH------RNCPVSPVDR-----------T 1127

Query: 1095 SKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
            S  M T+ +PY  + L  EL +MNI   L+L D
Sbjct: 1128 SDNMATIKIPYACKLLFQELQSMNIIPRLRLAD 1160


>gi|302832249|ref|XP_002947689.1| hypothetical protein VOLCADRAFT_103593 [Volvox carteri f.
            nagariensis]
 gi|300267037|gb|EFJ51222.1| hypothetical protein VOLCADRAFT_103593 [Volvox carteri f.
            nagariensis]
          Length = 1206

 Score =  357 bits (916), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 326/1162 (28%), Positives = 508/1162 (43%), Gaps = 151/1162 (12%)

Query: 38   CRQAKISYTGKLMADV-EFQYLDAGSPVVRER------FNFGQFPVMLKTRRCHL-QGAD 89
             R   ++Y   L  DV + +Y       V E+       + G+ P+MLK+ RC+L + A 
Sbjct: 114  ARLRNLTYCAPLYVDVTKTEYTRQADDTVEEKQETLSHVHLGKVPIMLKSERCNLHEAAT 173

Query: 90   SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
             Q+  +L E   + GGYF++NG E+V    ++ ++    + V    + +   YT  A + 
Sbjct: 174  EQEATNLGECPYDQGGYFVINGSEKV----LIAQERMANNHVYVFKKSQPSKYTFCAEIR 229

Query: 150  RCVR---KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---LPVGIVLKALVDTNDLEIFN 203
              V    +  SS+++ +      +   G       Y+    P+ I+ +AL   +D +I  
Sbjct: 230  SVVEGSTRSASSMSIMMLAKGKKAGAAGVIRAQIPYIRAEFPIFILFRALGFVSDRDILE 289

Query: 204  HLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQ 263
            H+    D            P + E ++  + E Q++   T+ + L ++G+  +  + G  
Sbjct: 290  HIVYDLD----------SDPAMLEALRASVEEAQEVQ--TQEEALNYLGK--RGTVTGAS 335

Query: 264  SESYYAVAETVIRDYIFVHLNDN----NDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQ 319
                   A  ++   +  HL         K   + +M+ +L  +       D+ D   N+
Sbjct: 336  KADRIQYARNLLIKELLPHLGTEEFMETRKGYFVGYMVHRLMLVALGRRPEDDRDHYANK 395

Query: 320  EILLPGHLITIYLK---EKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             + L G L+    +    KL   LR   + + D     GK+ +  +  N          K
Sbjct: 396  RLDLGGPLMAGLFRLLFRKLCKELRMHAQRMVDA----GKEINVLSAIN---------EK 442

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             I   ++  L TG    Q    +  RAG +    RL +   +S  R V+      G +  
Sbjct: 443  IITRGLKYSLATGNWGEQGKQGI--RAGVSQVLARLTYASTLSHLRRVNSPIGREG-KLA 499

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
              R+L    WG  CP  TP+G+  GL+ +M   C +     S   +    +  T      
Sbjct: 500  KPRQLHNSLWGMFCPAETPEGQAVGLVKNMALMCYITVGTPSLPVVAHLEEFNTE----- 554

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVI--PSSEIEKVVAHLRRLKVSA-ASVIP 553
                   +L ++  +   A   V ++G  +G+   P++ I+ + A  R++  S   S+I 
Sbjct: 555  -------ALDEVTPADIAAATKVFINGVWLGIQRDPTALIKNLRAMRRQVAFSTEVSIIY 607

Query: 554  DDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV----------------RNIS-LPSEESQ 596
            D            G    L +FT   +  RP+                R IS LP EE  
Sbjct: 608  D------------GPLKELRIFTDYGRTSRPLYIVEDNRLLVTKNHIRRLISPLPDEEEY 655

Query: 597  N---------IELIGPFEQ----VFMEIR-CPDGGDGGRRNAFPATHEEIHPTGMLSVVA 642
                      +E I   E+    + M I    +  + G       TH EIHP  +L V A
Sbjct: 656  AWPQLVQDGLVEYIDAEEEETTMIAMTIADLRNAREAGSATGTTYTHCEIHPAMILGVCA 715

Query: 643  NLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYG 702
            ++ P+ DHNQSPRN YQ  M KQ MG      + R D + + L  PQ P+V T       
Sbjct: 716  SIIPFPDHNQSPRNTYQSAMGKQAMGMYATNYQTRMDTQGFVLYYPQKPLVCTRAMDYLK 775

Query: 703  IDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRG 762
              E P G NAIVA++ Y+GY+ ED+++LN SS+DRG      Y+    +    G+     
Sbjct: 776  FRELPAGINAIVAIMCYSGYNQEDSLMLNGSSIDRGFHRSIFYRAYKEEEKKAGSLSREE 835

Query: 763  QKLFRRNKDAKSLHSV---IDSDGLPYVGQMIHPGEPYC----SIYDKTTNSWRTNSRK- 814
             +       AK  H     +D+DGL   G  +   +  C    ++ D  T + +  ++K 
Sbjct: 836  IEAPDPVVTAKMKHGTYDKLDADGLCPPGTRVSGEDIICGKTVTLPDDPTGAVQRFTKKD 895

Query: 815  ------GSESVFVDYVAVDMKNSKNLPQK-ANIRFRHTRNPIIGDKFSSRHGQKGVCSQL 867
                  G E+  +D V   M  + +  QK   IR R    P +GDKF+SRHGQKG C   
Sbjct: 896  ASLALRGHEAGVIDQV---MLTTNDEGQKFVKIRVRTICIPQVGDKFASRHGQKGTCGIT 952

Query: 868  WPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVK 927
            +   DMPFS   G+ PD+I+NPHA PSRMTI  L+E++ +K  +L G   DATPF     
Sbjct: 953  YTMEDMPFSA-EGIVPDIIVNPHAIPSRMTIGHLVEALMSKVAALMGSEGDATPF----- 1006

Query: 928  KTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRH 987
                      +K  VD + +ML   G+   G EV+Y+G  G +L  +IF+ P YYQRL+H
Sbjct: 1007 ----------TKVTVDNVSQMLHDLGYQRRGWEVMYNGHTGRQLRAQIFLNPTYYQRLKH 1056

Query: 988  MVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDY 1047
            MV  K   R  G +  +TRQP +GR R GG+RFGEMERD +++HGAA  L +RL   SD 
Sbjct: 1057 MVDFKIHSRGRGPVQVLTRQPAEGRARDGGLRFGEMERDCIISHGAAAFLKERLFDQSDA 1116

Query: 1048 HVADVCSLCGSVLTATFIHPQKRAI--REIGGLPPARAPKKVTCHACQTSKGM--ETVAM 1103
            +   VC   G +  A     Q  +   ++   +  A   +     A    K M  + V +
Sbjct: 1117 YRVHVCERSGLIAVANLKKQQFTSTIYKDGSNIYQASYRRNPRWAAGGGYKRMWNKDVYV 1176

Query: 1104 PYVFRYLAAELAAMNIKITLQL 1125
            PY  + L  EL AM I   +Q 
Sbjct: 1177 PYACKLLFQELMAMCIAPRMQF 1198


>gi|302505599|ref|XP_003014506.1| hypothetical protein ARB_07068 [Arthroderma benhamiae CBS 112371]
 gi|291178327|gb|EFE34117.1| hypothetical protein ARB_07068 [Arthroderma benhamiae CBS 112371]
          Length = 1196

 Score =  357 bits (916), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 203/517 (39%), Positives = 280/517 (54%), Gaps = 59/517 (11%)

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH EI P  +L  VA L PY  HNQSPRN YQC M KQ +G        R D  LY +  
Sbjct: 714  THLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYAMVY 773

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
            PQ P+V+T T      D+ P G NA+VAV++Y+GYD+EDA++LNK SVDRG    Q+++ 
Sbjct: 774  PQKPMVKTRTIELTNYDKLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRK 833

Query: 748  ETIDLSDDGNKV-DRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN 806
             + +L    N   DR     R N  +   H ++D+DGL  VG+ + PGE Y  I  +T +
Sbjct: 834  YSANLKSYSNGTKDRLVGPTRENGVSIRKHGLLDNDGLAAVGEKVSPGEVY--INKETPD 891

Query: 807  SWRTNSRKGSES-------------VFVDYVAVD---MKNSKNLPQKANIRFRHTRNPII 850
            +  ++   GS++                DY  +D   +  ++   Q   ++ R TR P +
Sbjct: 892  NALSSGITGSDAGLPVKYNPTPQTYKLPDYSYIDKVMISTTEGESQLIKVQTRQTRRPEV 951

Query: 851  GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGG 910
            GDKFSSRHGQKGV   +    DMPF+  TG+ PD+I+NPH FPSRMT+  +LE VA K G
Sbjct: 952  GDKFSSRHGQKGVVGIIAEQADMPFTD-TGLVPDIIMNPHGFPSRMTVGKMLELVAGKAG 1010

Query: 911  SLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTE 970
             + G+F   TPF  S                V+E+  +L   GF+Y G + L SG+ G  
Sbjct: 1011 IISGQFGYGTPFGGSP---------------VEEMSAILVDHGFSYGGKDYLTSGITGEP 1055

Query: 971  LTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLA 1030
            LT  +F GP+YYQ+L+HMV DK   R+ G    +TRQP +GR R GG+R GEMERD L+A
Sbjct: 1056 LTYYVFTGPIYYQKLKHMVQDKMHSRARGPRATLTRQPTEGRSRDGGLRLGEMERDCLIA 1115

Query: 1031 HGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCH 1090
            +G + LL +RL   SD H  DVC  CG +  + +                        C 
Sbjct: 1116 YGTSQLLLERLMISSDRHEVDVCESCGFMGYSGW------------------------CQ 1151

Query: 1091 ACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
             C++S G+  + +PY  + L  EL +MN+   L+L D
Sbjct: 1152 RCKSSVGVVKMVIPYAAKLLVQELFSMNVVARLRLQD 1188



 Score = 91.7 bits (226), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 105/450 (23%), Positives = 192/450 (42%), Gaps = 62/450 (13%)

Query: 36  DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
           + CR   ++Y   ++ D  F+Y+     V R     G+ PVML++ +C L    ++++ +
Sbjct: 151 NECRLRDMTYAAPILVD--FEYVRGRQRVKRNGTAIGRMPVMLRSSKCVLSNKSAREMYT 208

Query: 96  LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
           L E   + GGYFI+NG E+    VIL ++    + V      ++E            RK 
Sbjct: 209 LHECPLDPGGYFIVNGTEK----VILVQEQLSKNRVIVETDPKKEIVQASVTSSSHERKS 264

Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
           +S + +K      G + L   +   +  +P+ I+LKA+   +D E+   L    D +Y+ 
Sbjct: 265 KSYIIMK-----KGRIYLRHNVLNDD--IPIVILLKAMGIQSDKEML-LLVAGVDMEYQ- 315

Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEH---------FQPVIDGLQSES 266
                      E   I   E   LS+ T+ Q L+++G           F P      +E+
Sbjct: 316 -----------EDFAINFEEAVKLSIYTQQQALEYLGARIKINRKASGFGPARRNYVAEA 364

Query: 267 YYAVAETVIRDYIFVHLNDNNDKFNLL--IFMLQKLFSLVDHTSVSDNPDSLQNQEILLP 324
             A++  +I     V + D N +   L    M +++       S+ D+ D + N+ + L 
Sbjct: 365 IEAISSVIIS---HVQVQDMNFRPKALYVTHMARRVLMAKLDPSLVDDRDYVGNKRLELA 421

Query: 325 GHLITIYLKEKLEDWLRK---GKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTS 381
           G L+ +      ED  +K     K+  D++     + + F+   +  +   + ++ +  +
Sbjct: 422 GQLLALL----FEDLFKKFCFDIKMNIDKVLKKPVRTEAFDAYPVVAIHGNHITQGMNRA 477

Query: 382 IET---MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS- 437
           I T    LK  R+         +RAG T    RL+++  +     +   + F   R  S 
Sbjct: 478 IATGNWSLKRFRM---------ERAGVTHVLSRLSYIAALGMMTRI--SSQFEKTRKVSG 526

Query: 438 VRKLLPESWGFLCPVHTPDGEPCGLLNHMT 467
            R L P  +G LC   TP+GE CGL+ ++ 
Sbjct: 527 PRALQPSQFGMLCTSDTPEGEACGLVKNLA 556


>gi|302657001|ref|XP_003020234.1| hypothetical protein TRV_05698 [Trichophyton verrucosum HKI 0517]
 gi|291184045|gb|EFE39616.1| hypothetical protein TRV_05698 [Trichophyton verrucosum HKI 0517]
          Length = 1196

 Score =  357 bits (916), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 203/517 (39%), Positives = 280/517 (54%), Gaps = 59/517 (11%)

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH EI P  +L  VA L PY  HNQSPRN YQC M KQ +G        R D  LY +  
Sbjct: 714  THLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYAMVY 773

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
            PQ P+V+T T      D+ P G NA+VAV++Y+GYD+EDA++LNK SVDRG    Q+++ 
Sbjct: 774  PQKPMVKTRTIELTNYDKLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRK 833

Query: 748  ETIDLSDDGNKV-DRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN 806
             + +L    N   DR     R N  +   H ++D+DGL  VG+ + PGE Y  I  +T +
Sbjct: 834  YSANLKSYSNGTKDRLVGPTRENGVSIRKHGLLDNDGLAAVGEKVSPGEVY--INKETPD 891

Query: 807  SWRTNSRKGSES-------------VFVDYVAVD---MKNSKNLPQKANIRFRHTRNPII 850
            +  ++   GS++                DY  +D   +  ++   Q   ++ R TR P +
Sbjct: 892  NALSSGITGSDAGLPVKYNPTPQTYKLPDYSYIDKVMISTTEGESQLIKVQTRQTRRPEV 951

Query: 851  GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGG 910
            GDKFSSRHGQKGV   +    DMPF+  TG+ PD+I+NPH FPSRMT+  +LE VA K G
Sbjct: 952  GDKFSSRHGQKGVVGIIAEQADMPFTD-TGLVPDIIMNPHGFPSRMTVGKMLELVAGKAG 1010

Query: 911  SLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTE 970
             + G+F   TPF  S                V+E+  +L   GF+Y G + L SG+ G  
Sbjct: 1011 IISGQFGYGTPFGGSP---------------VEEMSAILVDHGFSYGGKDYLTSGITGEP 1055

Query: 971  LTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLA 1030
            LT  +F GP+YYQ+L+HMV DK   R+ G    +TRQP +GR R GG+R GEMERD L+A
Sbjct: 1056 LTYYVFTGPIYYQKLKHMVQDKMHSRARGPRATLTRQPTEGRSRDGGLRLGEMERDCLIA 1115

Query: 1031 HGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCH 1090
            +G + LL +RL   SD H  DVC  CG +  + +                        C 
Sbjct: 1116 YGTSQLLLERLMISSDRHEVDVCESCGFMGYSGW------------------------CQ 1151

Query: 1091 ACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
             C++S G+  + +PY  + L  EL +MN+   L+L D
Sbjct: 1152 RCKSSVGVVKMVIPYAAKLLVQELFSMNVVARLRLQD 1188



 Score = 91.7 bits (226), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 107/450 (23%), Positives = 188/450 (41%), Gaps = 62/450 (13%)

Query: 36  DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
           + CR   ++Y   ++ D  F+Y+     V R     G+ PVML++ +C L    ++++ +
Sbjct: 151 NECRLRDMTYAAPILVD--FEYVRGRQRVKRNGTAIGRMPVMLRSSKCVLSNKSAREMYT 208

Query: 96  LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
           L E   + GGYFI+NG E+    VIL ++    + V      ++E            RK 
Sbjct: 209 LHECPLDPGGYFIVNGTEK----VILVQEQLSKNRVIVETDPKKEIVQASVTSSSHERKS 264

Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
           +S + +K      G + L   +   +  +P+ I+LKA+   +D E+   L    D +Y+ 
Sbjct: 265 KSYIIMK-----KGRIYLRHNVLNDD--IPIVILLKAMGIQSDKEML-LLVAGVDMEYQ- 315

Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEH---------FQPVIDGLQSES 266
                      E   I   E   LS+ T+ Q L+++G           F P      +E+
Sbjct: 316 -----------EDFAINFEEAVKLSIYTQQQALEYLGARIKINRKASGFGPARRNYVAEA 364

Query: 267 YYAVAETVIRDYIFVHLNDNNDKFNLL--IFMLQKLFSLVDHTSVSDNPDSLQNQEILLP 324
             A++  +I     V + D N +   L    M +++       S+ D+ D + N+ + L 
Sbjct: 365 IEAISSVIIS---HVQVQDMNFRPKALYVTHMARRVLMAKLDPSLVDDRDYVGNKRLELA 421

Query: 325 GHLITIYLKEKLEDWLRKGKKLIQDEIENNGKK------FDFFNLANIKKVMEKNPSKQI 378
           G L+ +      ED  +K    I+  I+   KK      FD + +  I           I
Sbjct: 422 GQLLALL----FEDLFKKFCFDIKMNIDKVLKKPVRTEAFDAYPVVAIH-------GNHI 470

Query: 379 GTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS- 437
              +   + TG  + +      +RAG T    RL+++  +     +   + F   R  S 
Sbjct: 471 TQGMNRAIATGNWSLKRF--RMERAGVTHVLSRLSYIAALGMMTRI--SSQFEKTRKVSG 526

Query: 438 VRKLLPESWGFLCPVHTPDGEPCGLLNHMT 467
            R L P  +G LC   TP+GE CGL+ ++ 
Sbjct: 527 PRALQPSQFGMLCTSDTPEGEACGLVKNLA 556


>gi|240103983|ref|YP_002960292.1| DNA-directed RNA polymerase subunit B [Thermococcus gammatolerans
            EJ3]
 gi|239911537|gb|ACS34428.1| DNA-directed RNA polymerase subunit B (rpoB) [Thermococcus
            gammatolerans EJ3]
          Length = 1122

 Score =  357 bits (916), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 323/1209 (26%), Positives = 513/1209 (42%), Gaps = 213/1209 (17%)

Query: 15   LVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRE------- 67
            LVR H++S++  ++ GL E+ +     K         +V+F  +  G P+ +E       
Sbjct: 29   LVRQHLDSYNAFIEHGLQEVINEFGGVKPDIPN---FEVKFGKIRLGEPIFQEAQGQRRP 85

Query: 68   ---------------------------------RFNFGQFPVMLKTRRCHLQGADSQKLV 94
                                                 G+ P+MLK++ C L G   ++L+
Sbjct: 86   LYPMDARIRNLTYSAPLFLELIPVVNGIEQEPVEVRIGELPLMLKSKACRLYGLSDEELI 145

Query: 95   SLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRK 154
             L E+  + GGYFI+NG ERV  S+                        D A     V K
Sbjct: 146  ELGEDPKDPGGYFIINGSERVIVSI-----------------------EDLAPNKTLVEK 182

Query: 155  D--QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGI-----------VLKALVDTNDLEI 201
            D  Q  V  K++   +G   L      K+ +L V I           V++AL   +D EI
Sbjct: 183  DERQKKVVAKVFSYRHGYRALITVESRKDGILYVSIPNVPKPVKFVYVMRALGLLSDKEI 242

Query: 202  FNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLS-LTTRLQCLQHIGEHFQPVID 260
               ++                P + +   ++   ++D S + T+ + L  IG    P   
Sbjct: 243  VEAISE--------------DPRIQQ---VLFNNLEDASDIRTQEEALDFIGRLSLP--- 282

Query: 261  GLQSESYYAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
            G   E     AE +I + +  H+     +   K   L  M  K+  L       D+ D  
Sbjct: 283  GQPKEYRLRRAEHIIDNNLLPHMGVEPENRKAKAYYLGMMALKVLELSLGLRGEDDKDHY 342

Query: 317  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
             N+ + L G L+    +      ++  +  +    +  G+++ F N+     V       
Sbjct: 343  ANKRLKLAGDLLKDLFRVAFGQLVKDMQYQMTKTYQRKGERYTFENIQRF--VRNSVRPD 400

Query: 377  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
             +   IE  L TG            R G +   +R N++  +S  R V    S       
Sbjct: 401  VLSERIEHALATGSWPGG-------RTGVSQLLDRTNYISTLSHLRRVTSPLSREQPHFE 453

Query: 437  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
            + R L    WG +CP  TP+G  CGL+ ++    ++ +            +++  IL+  
Sbjct: 454  A-RDLHGTHWGRICPTETPEGPNCGLVKNLALMSQITTGIPE-------EEVKEYILK-- 503

Query: 497  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSE--IEKVVAHLRRLKVSAASVIPD 554
            +GV     +P   +   P +  V L+G ++G I   +  ++ + +  R  K+S       
Sbjct: 504  LGV-----VPIEERRPSPGLYRVYLNGVLIGTIEDGKALVQTIRSDRRAGKIS------- 551

Query: 555  DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNIS--LPSEESQNIELIGPFEQVFME-- 610
              +V  V L   G    +Y+ +   +  RP+  +    P    +++E I      + +  
Sbjct: 552  --DVINVALYEEGDVREIYINSDDGRVRRPLIIVENGRPKLTREHVEAIKNGTLTWSDLI 609

Query: 611  ----IRCPDGGDGGRRNAFPAT----------HEEIHPTGMLSVVANLTPYSDHNQSPRN 656
                I   D  +    NA+ AT          H E+ P  +L + A+L PY +HN +PRN
Sbjct: 610  RMGVIEYLDAEE--EENAYVATWPWEVTEEHTHLELMPAAILGIPASLVPYPEHNAAPRN 667

Query: 657  MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
             Y   MAKQ++G      + R D + + +  PQ P+V +      G +E P G N +VAV
Sbjct: 668  TYGAGMAKQSLGLGWANFRIRVDTRGHLMHYPQVPLVNSRIMKAVGFEERPAGQNFVVAV 727

Query: 717  LAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVDRGQKLFRRNKD--AK 773
            L+Y GY+MEDA+++NK+S++RG+     ++T E  +    G ++DR +K     K     
Sbjct: 728  LSYGGYNMEDAIVINKASIERGLARSTFFRTYEAEEKRYLGGQMDRFEKPDPTIKGYLGD 787

Query: 774  SLHSVIDSDGLPY-----------VGQMIHPG--EPYCSIYDKTTNSWRTNSR--KGSES 818
              +  +D DG+ +           VG+   P   E    +        R  S   + SE 
Sbjct: 788  RYYRNLDEDGIIFPESKVEGKDVLVGRTSPPRFLEEQSGLGGIALQERRETSVAVRPSEK 847

Query: 819  VFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGV 878
              VD V +    + +  +   +  R  R P +GDKF+SRHGQKGV   + P  DMP++  
Sbjct: 848  GIVDKVII--TETGDGTKLVKVTVRDLRIPELGDKFASRHGQKGVIGLIVPQEDMPWTE- 904

Query: 879  TGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDES 938
             G+ PDLI+NPH  PSRMT+  L+E++  K  SL G+ +D T F    ++          
Sbjct: 905  NGIVPDLIVNPHGIPSRMTVGQLIEAIGGKVASLKGRRVDGTAFIGEPEEKLRKELE--- 961

Query: 939  KSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRST 998
                          GF + G EV+Y G+ G  L  +IFIG +YYQRL HMV+DK   RS 
Sbjct: 962  ------------ELGFKHTGREVMYDGITGRRLEADIFIGVIYYQRLHHMVADKMHARSR 1009

Query: 999  GTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGS 1058
            G +  +T+QP +GR R GG+RFGEMERD L+ HGAA LL +RL   SD     VC  CG 
Sbjct: 1010 GPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGH 1069

Query: 1059 VLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMN 1118
            +     +  ++R               KV C  C   + +  V M Y F+ L  EL AM 
Sbjct: 1070 IA----LEDKRRG--------------KVYCPVCGEEERISKVEMSYAFKLLLDELKAMV 1111

Query: 1119 IKITLQLGD 1127
            I+ +L+L D
Sbjct: 1112 IRPSLKLKD 1120


>gi|145340678|ref|XP_001415447.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144575670|gb|ABO93739.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 1174

 Score =  357 bits (915), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 324/1155 (28%), Positives = 499/1155 (43%), Gaps = 157/1155 (13%)

Query: 39   RQAKISYTGKLMADVEFQYL----DAGSPVVRERFN---FGQFPVMLKTRRCHLQGADSQ 91
            R   ++Y+  L  D+  +      D  + V +E  N    G+ P+ML++  C L G   +
Sbjct: 110  RLRNLTYSAPLYVDMVKEVTTVQPDGETTVEKEILNKNFIGKVPIMLRSDYCSLHGHTDK 169

Query: 92   KLVSLKEEAAEMGGYFILNGLERVFRS---------VILPKQNYPMSMVRSSFRDRREGY 142
            +L  L E   + GGYF++NG E+V  +          +  K+     M ++  R + E  
Sbjct: 170  ELTELGECPYDEGGYFVINGSEKVLIAQERMSTNHVYVFEKKQPSKFMWQAECRSQPE-- 227

Query: 143  TDKAVVIRCVRKDQSSVTLKLYYL----LNGSVRLGFWLQGKEYLLPVGIVLKALVDTND 198
                   R  R   S V  +L+        G +R        +  +P+ +V +AL    D
Sbjct: 228  -------RGSRGASSCVMRQLHAPGTKDAPGPIRCTLPYIRTD--IPIFVVFRALGFVAD 278

Query: 199  LEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV 258
             +I  H+   YD     E   +  P + E   I   EV           L  IG+    V
Sbjct: 279  KDILEHIV--YDLA-DNEMMEMLRPSIEEAFVIQSQEV----------ALDFIGKRGSAV 325

Query: 259  IDGLQSESYYAVAETVIRDYIFVHLNDNND----KFNLLIFMLQKLFSLVDHTSVSDNPD 314
              G+  E     A+ +++  +  H+    D    K   L +M+ +L          D+ D
Sbjct: 326  --GVSREKRIKYAKEILQKELLPHVGVREDCETKKAYFLGYMIHRLLLCSLGRRPEDDRD 383

Query: 315  SLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNP 374
               N+ + L G L+    ++     L K  +L      ++GK+     LA IK       
Sbjct: 384  HYGNKRLDLGGPLLAQLFRQLFRK-LTKDVRLYCQRCIDSGKEIQL-QLA-IK------- 433

Query: 375  SKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLR 434
            +K I   ++  L TG   +Q   D+  RAG +    RL++   +S  R ++      G +
Sbjct: 434  AKTITQGLKYSLATGNWGSQGAADI--RAGVSQVLNRLSYSSTLSHLRRINSPIGREG-K 490

Query: 435  TTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILR 494
                R+L    WG +CP  TP+G+  GL+ ++     V+    S             IL 
Sbjct: 491  LAKPRQLHNSLWGMICPAETPEGQAVGLVKNLALMALVSVGSPSE-----------PILE 539

Query: 495  VLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV--IPSSEIEKVVAHLRRLKVSAASVI 552
             L    M  +L ++  S       + L+G  VGV   P+  +  +    R+  + ++  +
Sbjct: 540  FLDEWTM-ENLEEISPSLIAESTKIFLNGVWVGVHRNPADLVRTLRKLRRQCDIDSSVSV 598

Query: 553  PDDLEVGYVPL--SLGGAYPGLYLFTSPPKFVRPVRNISLPSEE------------SQNI 598
              D+ +  + L    G     L++     K     ++I L +E+            S  I
Sbjct: 599  VHDIRLKELRLYTDYGRCTRPLFIVEDDQKLKIKKQHIELLTEKDVTGYTWNELVTSGFI 658

Query: 599  ELIGPFEQVFMEIRCP-DGGDGGRRN-------AFPATHEEIHPTGMLSVVANLTPYSDH 650
            E +   E+    I    D    GR         A   TH EIHP+ +L + A++ P+ DH
Sbjct: 659  EYVDTEEEETTMISMTIDDLVAGRHAVEQNTGVAINYTHCEIHPSMILGICASIIPFPDH 718

Query: 651  NQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGT 710
            NQSPRN YQ  M KQ MG  V   + R D   Y +  PQ P+V T         E P G 
Sbjct: 719  NQSPRNTYQSAMGKQAMGMYVTNYQIRMDTLGYVMFYPQKPLVTTRAMEYLHFRELPAGC 778

Query: 711  NAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGN-------KVDRGQ 763
            NA+VA++ YTGY+ ED++++N+S++DRG+     Y++   +    G+       + DR  
Sbjct: 779  NAVVAIMCYTGYNQEDSVLMNQSAIDRGLFRSLYYRSFKDEEKKQGSLSREEFERPDRDT 838

Query: 764  KLFRRNKDAKSLHSVIDSDGLPYVGQMIH------------PGEPYCSIYDKTTNSWRTN 811
             L  R+      +  +D DGL   G  +             P +    +  + +    + 
Sbjct: 839  CLGMRH----GTYDKLDDDGLICPGTRVSGDDIIIGKTAPLPEDDTAVLSKRFSKKDCST 894

Query: 812  SRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDI 871
              K +E+  +D V +   N + L +   +R R  R P +GDKFSSRHGQKG     +   
Sbjct: 895  GMKHAETGIIDQVLL-TTNDQGL-RFVKLRVRSMRTPQVGDKFSSRHGQKGTVGMTYTQE 952

Query: 872  DMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNG 931
            DMPF+   G+ PD+I+NPHA PSRMTI  L+E +  K  +  GK  DATPF         
Sbjct: 953  DMPFT-CEGITPDIIVNPHAIPSRMTIGQLVECIMGKVAACMGKEGDATPF--------- 1002

Query: 932  DTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSD 991
                  +    +++  ML  CG+   G EV+Y+G  G  L  +IFIGP YYQRL+HMV D
Sbjct: 1003 ------TPVTAEDISSMLHKCGYQKRGNEVMYNGHTGRMLDAQIFIGPTYYQRLKHMVDD 1056

Query: 992  KFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVAD 1051
            K   R  G +  +TRQP++GR R GG+RFGEMERD +++HGAA  L +RL   SD +   
Sbjct: 1057 KIHSRGRGPVQILTRQPMEGRSRDGGLRFGEMERDCIMSHGAASFLKERLMDQSDAYRIH 1116

Query: 1052 VCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLA 1111
            VC  CG +  A      K    E    P  R               +  V +PY  + L 
Sbjct: 1117 VCQKCGLIAVANL----KNQTFECCKNPSERT-------------SVVQVMVPYACKLLF 1159

Query: 1112 AELAAMNIKITLQLG 1126
             EL +M I   L  G
Sbjct: 1160 QELMSMAIAPRLITG 1174


>gi|409051856|gb|EKM61332.1| hypothetical protein PHACADRAFT_247866 [Phanerochaete carnosa
            HHB-10118-sp]
          Length = 1237

 Score =  356 bits (914), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 318/1169 (27%), Positives = 512/1169 (43%), Gaps = 175/1169 (14%)

Query: 39   RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
            R+   S TG L+ + E       SP    +   G+ P+ML++  C L     ++L  L E
Sbjct: 150  REDPDSTTGDLVWEQEHD----ESPEDTRKVWIGKVPIMLRSTFCILNKLTQEELFDLNE 205

Query: 99   EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
               + GGYFI+NG E+V    ++ ++    + V    + +    +  A +   V K   +
Sbjct: 206  CPYDSGGYFIINGSEKV----LIAQERMATNHVYVFAKAQPSPISFLAEIRSAVEKGGKT 261

Query: 159  VT---LKLYYLLNGSVRLGFWLQGK-EYL---LPVGIVLKALVDTNDLEIFNHLTCCYD- 210
            ++   +KLY+  N    LG  ++    Y+   +P+ +V +AL   +D +I  H+  CYD 
Sbjct: 262  ISQFQVKLYHR-NQERSLGNVMKATIPYIKVDIPIWVVFRALGVISDRDILEHI--CYDM 318

Query: 211  ---EKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESY 267
               +  +  K  +    V +  +I L  + +   TT                 GL  E  
Sbjct: 319  QDAQMLEMLKPCIDDGFVIQDREIALDFIGNRGTTT-----------------GLNRERR 361

Query: 268  YAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
               A+ +++  +  H++    K     +M+ +L          D+ D    + + L G L
Sbjct: 362  LRYAQEILQKEMLPHIH----KAYFFGYMIHRLLLAALERRDLDDRDHFGKKRLDLAGPL 417

Query: 328  ITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLK 387
            +    +       R   + +Q  +E + +    FNL+   K         I   ++  L 
Sbjct: 418  LANLFRMLFRKLTRDVYRYLQKCVETHKE----FNLSLAVK------HNTITNGLKYSLA 467

Query: 388  TGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWG 447
            TG    Q    +  +AG +    R  +   +S  R  +      G +    R+L    WG
Sbjct: 468  TGNWGDQKK-SMSAKAGVSQVLNRYTYASTLSHLRRCNTPLGREG-KIAKPRQLHNTHWG 525

Query: 448  FLCPVHTPDGEPCGLLNHM---------TSTCRVASYYDSRG--NIRDFSKMRTSILRVL 496
             +CP  TP+G+ CGL+ ++         + +  V  + +  G  ++ + +   T   +V 
Sbjct: 526  MVCPAETPEGQACGLVKNLSLMACISVGSLSAPVIEFLEEWGLESLEENAHSTTPCTKVF 585

Query: 497  I-GVGM---------IPSLPKLVKSG--PPAVLSVLLD------------GRVVGVIPSS 532
            + GV M         + ++ KL +     P V SV+ D            GRV    P  
Sbjct: 586  VNGVWMGVHRDPANLVKTIKKLRRKDDISPEV-SVVRDIRERELRLYTDAGRVCR--PLF 642

Query: 533  EIEKVVAHLRRLKVS-AASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRN--IS 589
             +E     LR+  +   AS +P   + G   L   G Y        P ++   V++  I 
Sbjct: 643  IVENNQLTLRKKHIEWIASGVPQYDDAGSRLLKEDGTYDN-----QPYEWSNLVKDGVIE 697

Query: 590  LPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRN---------------AFPATHEEIHP 634
            L   E +   +I    +     R    G    R+               A   TH EIHP
Sbjct: 698  LLDAEEEETVMICMTPEDLENARLQQAGIDSHRDESEFDPSARLKNFSMAHLWTHCEIHP 757

Query: 635  TGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVR 694
            + +L V A++ P+ DHNQSPRN YQ  M KQ MG  +     R D     L  PQ P+  
Sbjct: 758  SMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLAT 817

Query: 695  TNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD 754
            T +       E P G NAIVA+L Y+GY+ ED++I+N+SS+DRG+     Y++  +DL +
Sbjct: 818  TRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRS-YMDL-E 875

Query: 755  DGNKVDRGQKLFRRNKDAK-----SLHSVIDSDGLPYVGQ-------MIHPGEPYCSIYD 802
              + V + ++  +  +D         +  ++ DGL   G        +I    P     +
Sbjct: 876  KKSGVQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGTGVNGEDIIIGKTAPIPPDSE 935

Query: 803  KTTNSWRTNSR-------KGSESVFVDYVAVDMKNSKNLPQK-ANIRFRHTRNPIIGDKF 854
            +     RT+++       K +ES  +D V +   N++   QK   IR R TR P IGDKF
Sbjct: 936  ELGQRTRTHTKRDVSTPLKSTESGIIDQVLI-TTNAEG--QKFVKIRVRSTRIPQIGDKF 992

Query: 855  SSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHG 914
            +SRHGQKG     +   DMPF+   G+ PD++INPHA PSRMTI  L+E + +K  ++ G
Sbjct: 993  ASRHGQKGTIGITYRQEDMPFTA-EGITPDIVINPHAIPSRMTIGHLVECLLSKVATIVG 1051

Query: 915  KFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCE 974
               DATPF +                 V+ + ++LR  G+   G+E++Y G  G +L  +
Sbjct: 1052 NEGDATPFTDLT---------------VESVSQILREQGYQSRGLEIMYHGHTGRKLQAQ 1096

Query: 975  IFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAA 1034
            ++ GP YYQRL+HMV DK   R+ G +  +TRQP++GR R GG+RFGEMERD +++HG A
Sbjct: 1097 VYFGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGVA 1156

Query: 1035 YLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQT 1094
              L +RL   SD +   VC +CG    A                      +   C +C+ 
Sbjct: 1157 AFLKERLFEASDAYRLHVCDICGLTAIANL------------------KKQTFECRSCKN 1198

Query: 1095 SKGMETVAMPYVFRYLAAELAAMNIKITL 1123
                  + +PY  + L  EL +MNI   L
Sbjct: 1199 KTACSQLYIPYAAKLLFQELQSMNIAARL 1227


>gi|70794968|gb|AAZ08458.1| RNA polymerase II second largest subunit [Rhododendron macrophyllum]
          Length = 1207

 Score =  356 bits (914), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 326/1160 (28%), Positives = 493/1160 (42%), Gaps = 166/1160 (14%)

Query: 39   RQAKISYTGKLMADVEFQYLDAGSPV--VRERFNF-----GQFPVMLKTRRCHLQGADSQ 91
            R   ++Y+  L  DV  + +  G     V E   F     G+ P+ML++  C L     +
Sbjct: 133  RLRNLTYSSPLYVDVTKRVVKKGHDCEEVTETQEFTKVFIGKVPIMLRSSYCSLYQTSEK 192

Query: 92   KLVSLKEEAAEMGGYFILNGLERVFRS-------------VILPKQNYPMSMVRSSFRDR 138
             L  L E   + GGYFI+NG E+V  +             +  P +   +S VRS    +
Sbjct: 193  DLTELGECPFDQGGYFIINGSEKVLIAQEKMSTNHVYVFKIRQPNKYAYVSEVRSMAESQ 252

Query: 139  REGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTND 198
                    + +R V    +       Y     +R        E  +P+ +V +AL    D
Sbjct: 253  NR--PPSGMFVRMVSSSSAKGGSSGQY-----IRATLPYIRTE--IPIVVVFRALGFVAD 303

Query: 199  LEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV 258
             +I  H+  CY+    K    +  P + E   I   +V           L +IG+    V
Sbjct: 304  KDILEHI--CYEFTDNKMMDLL-RPSLEEAFVIQNQQV----------ALDYIGKRGSTV 350

Query: 259  IDGLQSESYYAVAETVIRDYIFVHLND----NNDKFNLLIFMLQKLFSLVDHTSVSDNPD 314
              G+  E     A+ +++  +  H+         K     +++ +L          D+ D
Sbjct: 351  --GVTKEKRIRYAKEILQREMLPHVGTGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRD 408

Query: 315  SLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNP 374
               N+ + L G L+    +       R  +  +Q  + +NGK        N++  ++   
Sbjct: 409  HYANKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCV-DNGKD------VNLQFAIK--- 458

Query: 375  SKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLR 434
            +K I + ++  L TG            RAG +    RL +   +S  R ++      G +
Sbjct: 459  AKTITSGLKYSLATGNWGQANSAG--SRAGVSQVLNRLTYASTLSHLRRLNSPIGREG-K 515

Query: 435  TTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILR 494
                R+L    WG +CP  TP+G+ CGL+ ++     + +   +   I +F +  ++   
Sbjct: 516  LAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYI-TVGSAANPILEFLEEWSTENF 574

Query: 495  VLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEI-EKVVAHLRR-LKVSAASVI 552
              I   +IP   K           + ++G  VG+  + E+  + +  LRR + V+    +
Sbjct: 575  EEISPAVIPLATK-----------IFVNGCWVGIHRNPELLVRTLRQLRRQVDVNTEVGV 623

Query: 553  PDDLEVGYVPL--SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
              D+ +  + L    G     L++       ++    ++L   ES              I
Sbjct: 624  IRDIRLKELRLYTDCGRCSRPLFIVEKQKLQIKKKDILALQQRESPEEVGWHDLVAKGYI 683

Query: 599  ELIGPFEQ----VFMEIR-------CPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLT 645
            E +   E+    + M I        CPD       +A+  T  H EIHP+ +L V A++ 
Sbjct: 684  EYVDTEEEETTMISMTINDLTSARLCPD-------DAYSETYTHCEIHPSLILGVCASII 736

Query: 646  PYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDE 705
            P+ DHNQSPRN YQ  M KQ MG  V   + R D   Y L  PQ P+V T         +
Sbjct: 737  PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQ 796

Query: 706  YPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKL 765
             P G NAIVA+  Y+GY+ ED++I+N+SS+DRG      Y++   +    G  V      
Sbjct: 797  LPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSIFYRSYRDEEKKMGTLVKEDFGC 856

Query: 766  FRRNKDAKSLHSV---IDSDGLPYVGQMIHPGEPYCSIYDKTT---------NSWRTNSR 813
              R       H     +D DG    G  +  GE    I  KTT          + R   R
Sbjct: 857  PNRENTMGMRHGSYDKLDDDGFAPPGTRV-AGEDV--IIGKTTPIAPDDAQGQTARYTRR 913

Query: 814  ------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQL 867
                  + SES  VD V +   N+  L +   +R R  R P IGDKFSSRHGQKG     
Sbjct: 914  DHSTCLRHSESGMVDQVLL-TTNADGL-RFVKMRMRSIRIPQIGDKFSSRHGQKGTIGMA 971

Query: 868  WPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVK 927
            +   DMP++ + G+ PD+I+NPHA PSRMTI  L+E +  K  +  GK  DATPF +   
Sbjct: 972  YTQEDMPWT-IEGICPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT- 1029

Query: 928  KTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRH 987
                          VD + + L  CG+   G E +Y+G  G  LT  IF+GP YYQRL+H
Sbjct: 1030 --------------VDNISKALHKCGYQMRGFERMYNGHTGRPLTYTIFLGPTYYQRLKH 1075

Query: 988  MVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDY 1047
            MV DK   R  G +  +TRQP +GR R GG+RFGEMERD ++AHGAA+ L +RL   SD 
Sbjct: 1076 MVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDA 1135

Query: 1048 HVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVF 1107
            +   VC+LCG V  A                          C  C+    +  V +PY  
Sbjct: 1136 YRVHVCALCGIVAIANL------------------KKNSFECRHCKNKTDIVQVYIPYAC 1177

Query: 1108 RYLAAELAAMNIKITLQLGD 1127
            + L  EL AM I   L   D
Sbjct: 1178 KLLLQELMAMAIAPRLLTKD 1197


>gi|47156951|gb|AAT12334.1| DNA-directed RNA polymerase III subunit 2 130KDa subunit [Antonospora
            locustae]
          Length = 1014

 Score =  355 bits (911), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 314/1113 (28%), Positives = 497/1113 (44%), Gaps = 132/1113 (11%)

Query: 36   DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADS----- 90
            + CR   ++Y G +  D+E  Y      ++++    G+ P+ML++  CHL+         
Sbjct: 9    EECRLRDLTYCGNIYVDIE--YTKHRKVIIKKNVFIGKVPIMLRSMLCHLEEKRDDCETV 66

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            ++    +E   +MGGYFI+ G+ERV    IL ++    + + +   ++   +T       
Sbjct: 67   RETYGHRECPLDMGGYFIVKGVERV----ILIQEQLSKNRIIADIDNKGCKFTSVTSSTH 122

Query: 151  CVRKDQSSVTLK--LYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
              +K ++S+ LK  L YL N               +P  IVLKAL   +D EI       
Sbjct: 123  -DKKSKTSIILKKRLLYLKNNVFTDS---------VPAVIVLKALGMVSDCEI------- 165

Query: 209  YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYY 268
               ++  ++GA+      E ++  L       + T+LQ L  I +  +P     Q+ S  
Sbjct: 166  --AEFVGQEGAL-----LEMLEPSLEHALQTGVHTQLQALDFISKLTRP----RQNVSRI 214

Query: 269  AVAETVIRDYIFVHL-NDNND---KFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLP 324
              A T++ + +  ++ ND  D   K   +  M++ L     +    D+ D L N+   L 
Sbjct: 215  DEARTILYEVVLPNIPNDGIDMRRKAITVAIMIRVLLQAELNMISMDDIDFLGNKRFELA 274

Query: 325  GHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIET 384
            G+L++I  ++    +  + KK I   +  + +  D   L  +   ++ N    I  S   
Sbjct: 275  GNLLSILFEDTFLRFNSELKKSIDKVLSKSQRTQDLDALTFLN--LQVN---LISNSFVR 329

Query: 385  MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLP 443
             + TG    +      +RAG T    RL+++  I     +   + F   R  S  R L  
Sbjct: 330  AISTGNWTVRRFR--MERAGVTQVLSRLSYIAMIGSMAKIQ--SQFEKTRKISGPRSLHT 385

Query: 444  ESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP 503
             SWG LCP  TP+GE CGL+ ++     + +         D  +     L   +GV    
Sbjct: 386  SSWGMLCPADTPEGESCGLVKNLAILAEITT---------DVPQSDVEQLLFQLGVRDFR 436

Query: 504  SLPKLVKSGPPAVLSVLLDGRVVGVIPSSE--IEKVVAHLRRLKVSA-ASVIPDDLEVGY 560
            +   +      + L + L+G +VG+  ++   + K V   RR  VS   SV  +D +   
Sbjct: 437  TCSGIDFYSKHSYL-IFLNGTIVGICYNNNTLVRKFVEMRRRGVVSQFVSVYKNDEKRTI 495

Query: 561  VPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN-IELIGPFEQVFMEIRCPDGGDG 619
               + GG      +     + +    ++ L     +N  +L    +  F+++   +    
Sbjct: 496  SIATDGGRICRPLIIVENGRQMLEHEDLELLRRRYKNPDDLFKEGKVEFLDVNEENNTKI 555

Query: 620  GRRNA---FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKF 676
              R +      TH EI    +L  VA L PY  HNQSPRN YQC M KQ MGF       
Sbjct: 556  ALRESNICRSTTHLEICEYSILGCVAGLIPYPHHNQSPRNTYQCAMGKQAMGFVALNQYR 615

Query: 677  RADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVD 736
            R D  L  L  PQ P+V T        ++ P G N +VAV+AY GYD+EDA+I+NK ++D
Sbjct: 616  RFDTLLNLLVYPQKPLVSTKITDIVNFEKLPAGQNGMVAVMAYAGYDIEDALIINKGALD 675

Query: 737  RGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEP 796
            RG    ++Y++    L    N +         ++ + S H    SDG+   G+ +  G+ 
Sbjct: 676  RGFGRCEVYRSYKHSLKRYSNGMC--------DRISGSKH----SDGVRGPGERVFDGDF 723

Query: 797  YCSIYDKTTNS---WRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDK 853
            +      T ++   +     K      VD V V          K  +  R  R P +GDK
Sbjct: 724  FVYKESPTEDADFKFSGELYKNLSPSVVDKVIVARSGEDQFMVKTCL--RQVRQPEVGDK 781

Query: 854  FSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLH 913
            FSSRHGQKGV   + P+ D+PFS   G  PD+I+NPH FPSRMT+  ++E ++ K     
Sbjct: 782  FSSRHGQKGVIGLVVPETDLPFSE-DGQVPDIIMNPHGFPSRMTVGKIIELISGKAAVFT 840

Query: 914  GKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTC 973
            G+  DAT F                + + ++L  +L   G++Y G +   +G+ G     
Sbjct: 841  GRQSDATVF---------------REDITEDLSHILIKHGYSYCGKDTFTNGITGDVYEG 885

Query: 974  EIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGA 1033
             +F GPVYYQRL+HMV+DK   RS G    +TRQP +G+ R GG+R GEMERD L+ +GA
Sbjct: 886  YVFFGPVYYQRLKHMVADKMHARSRGPRAMLTRQPTEGKSREGGLRLGEMERDCLIGYGA 945

Query: 1034 AYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQ 1093
            + +L +RL   SD   A +C  CG ++                         K  C  C+
Sbjct: 946  SAILCERLMISSDVFRAYICHRCGIIVY------------------------KNMCTLCK 981

Query: 1094 TSKGMETVAMPYVFRYLAAELAAMNI--KITLQ 1124
                +  V MPY  + L  EL +MNI  +I LQ
Sbjct: 982  RGDPV-PVDMPYACKLLFQELMSMNILPRIKLQ 1013


>gi|443897388|dbj|GAC74729.1| RNA polymerase III, second largest subunit [Pseudozyma antarctica
            T-34]
          Length = 1158

 Score =  355 bits (911), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 319/1209 (26%), Positives = 510/1209 (42%), Gaps = 196/1209 (16%)

Query: 9    FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
            F  ++ LV+ HI+S++Y +D  L  +                                  
Sbjct: 56   FLQVKGLVKQHIDSYNYFVDHDLKNIIKANEKITSDIDPKFYLKYTDITVGEPRRYDGDA 115

Query: 37   --------HCRQAKISYTGKLMADVEFQYLDAGSPVVRER-FNFGQFPVMLKTRRCHLQG 87
                     CR   I+Y+  +  ++E+     GS ++R +    G+ PVML++ +C L  
Sbjct: 116  LQRPITPHECRLRDITYSAHIFVNIEYT---RGSKIIRRKNVAIGRIPVMLRSNKCVLAN 172

Query: 88   ADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAV 147
               ++L  + E   + GGYF++ G E+V   +++ +Q     ++  +  D ++G    +V
Sbjct: 173  KSEKELAKMSECPLDPGGYFVVKGTEKV---ILVQEQLSKNRIIVEA--DSKKGTVSASV 227

Query: 148  VIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTC 207
                  +   S      Y+L    R+          +P+ I  KA+    D EI   L  
Sbjct: 228  TSSTHERKSKS------YVLTKHGRIFLKHNSLHEDIPIAIAFKAMGIQADREIL-QLVA 280

Query: 208  CYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQ---- 263
             +D+ YK            E   I L E   L + TR Q L  IG   +     L     
Sbjct: 281  GHDDVYK------------ELFAINLEEAARLGVYTRKQALDFIGARAKASRKPLSMRRP 328

Query: 264  -SESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEIL 322
             +E    V  TVI  ++ V   +   K   +  M++++   +      D+ D + N+ + 
Sbjct: 329  LAEEALDVLATVIMAHVPVERLNFRPKAIYIACMVRRVLMAMQDEKKVDDRDYVGNKRLE 388

Query: 323  LPGHLITIYLKEKLEDWLRKGKKLIQDEI---ENNGKKFDFFNLANIKKVMEKNPSKQIG 379
            L G L+ + L E L        KL  D+I    N   +FD FN  +            I 
Sbjct: 389  LAGQLLAL-LFEDLFKKFNSDLKLNIDKILKKPNRTVEFDAFNQFHFN-------GDYIT 440

Query: 380  TSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-V 438
            +     + TG  + +      +RAG T    RL+++  +     +   + F   R  S  
Sbjct: 441  SGFVRAISTGNWSLKRFK--MERAGVTHVLSRLSYIAALGMMTRI--SSQFEKTRKVSGP 496

Query: 439  RKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIG 498
            R L P  WG LCP  TP+GE CGL+ ++  T  + +  +     R    +    + +L G
Sbjct: 497  RALQPSQWGMLCPSDTPEGEACGLVKNLALTTHITTDVEEEPIARVAFTLGVEDIHLLTG 556

Query: 499  VGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEV 558
              +            P    V L+G V+GV  +   ++ V   RRL+   A  I +    
Sbjct: 557  AELYR----------PDSFVVYLNGNVLGV--TRFPQRFVMQFRRLR--RAGRISE---- 598

Query: 559  GYVPLSLGGAYPGLYLFTSPPKFVRPVRNIS-------LPSEESQNIELIGPFEQVFMEI 611
             +V +     +  +Y+ +   +  RP+  +        +  +  + ++   P  Q  +  
Sbjct: 599  -FVSVYTNNHHQTVYIASDGGRICRPLIVVDAVTGQPRVTEDHIRQLKSGAPRHQTIIHN 657

Query: 612  RCPDGG---DGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNM-YQCQMAKQTM 667
               D        RR +   +  +  P   LS + +  P      SPR    QC MAKQ  
Sbjct: 658  SSRDRTIHHPRRRRWSHSLSSTQPKPKTCLSCLYHSPPLL---CSPRLFRQQCAMAKQAQ 714

Query: 668  GFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDA 727
            G        R D  LY +  PQ P+V+T T    G D+ P G NA+VAV++++GYD+EDA
Sbjct: 715  GSIGYNQLERIDTLLYLMVYPQEPMVKTRTIELVGYDKLPAGQNAMVAVMSFSGYDIEDA 774

Query: 728  MILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR------GQKLFRRNKDAKSLHSVID 780
            ++LNK+S+DRG    Q  +  +  +    N   DR       +   +R K     + +++
Sbjct: 775  LLLNKASLDRGFGRCQTMKKSSTVIRKYPNGTHDRLADAPVDEATGKRQKR----YDILE 830

Query: 781  SDGLPYVGQMIHPGEPYCS------IYDKTTNSWRTNSRKGSESV--------------- 819
            +DG+  VG+ +  G+ Y +        D ++ +    +   + SV               
Sbjct: 831  ADGIAGVGERVDQGDVYVNKQTPVNANDNSSTAIMIGASNAAASVAYKSAPLSYKPPVSG 890

Query: 820  FVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVT 879
            ++D V +   +S     KA +R   TR P +GDKFSSRHGQKGVC  +    DMPFS   
Sbjct: 891  YIDQVLITDTDSDQTLIKALVR--QTRRPELGDKFSSRHGQKGVCGLIVQQEDMPFSD-R 947

Query: 880  GMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESK 939
            G+ PD+I+NPH FPSRMT+  ++E ++ K G + G     T F  S              
Sbjct: 948  GINPDIIMNPHGFPSRMTVGKMIELLSGKAGVVTGTLQYGTAFGGS-------------- 993

Query: 940  SLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTG 999
              V+++  +L   G+NY   E L SG+ G  L   ++ GP+YYQRL+HMV DK   R+ G
Sbjct: 994  -QVEDMSRLLVENGYNYAAKETLTSGITGQPLEAYVYFGPIYYQRLKHMVQDKMHARARG 1052

Query: 1000 TMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSV 1059
                +TRQP +GR R GG+R GEMERD L+ +GA  LL +RL   SD      C  CG +
Sbjct: 1053 PRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGATQLLLERLMISSDAFTVHACQRCGLM 1112

Query: 1060 LTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
                F                        C  C +SK +  + +PY  + +  EL AM +
Sbjct: 1113 GYNGF------------------------CPYCSSSKHVVQLTIPYGTKLMLQELMAMQV 1148

Query: 1120 KITLQLGDG 1128
               L L D 
Sbjct: 1149 VPRLVLEDA 1157


>gi|224587859|gb|ACN58727.1| DNA-directed RNA polymerase III subunit RPC2 [Salmo salar]
          Length = 814

 Score =  355 bits (911), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 267/861 (31%), Positives = 403/861 (46%), Gaps = 128/861 (14%)

Query: 311  DNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVM 370
            D+ D   N+ + L G L+++  ++  + +  + KK I D+I    +   F    +I K M
Sbjct: 33   DDRDYYGNKRLELAGQLLSLLFEDLFKKFNSELKK-ISDQIIPKQRAAQF----DIVKHM 87

Query: 371  EKNPSKQIGTSIETMLKTGRLATQT-GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGAS 429
             ++   QI   +   + TG  + +   +D   R G T    RL+F+  +     +   + 
Sbjct: 88   RQD---QITNGMVNAISTGNWSLKRFKMD---RQGVTQVLSRLSFISALGMMTRI--SSQ 139

Query: 430  FAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKM 488
            F   R  S  R L P  WG LCP  TP+GE CGL+ ++     + +  +    ++    +
Sbjct: 140  FEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLAFNL 199

Query: 489  RTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSA 548
                + +L G  +            P+V  V L+G ++GVI   + +++V   R ++   
Sbjct: 200  GVEDVNLLCGEEL----------SYPSVFLVFLNGNILGVI--RDHQRLVYTFRLMR--R 245

Query: 549  ASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP--VRNISLPSEESQNIELIG---- 602
            A  I +     +V +S       +Y+ +   +  RP  +     P  ++++IE +     
Sbjct: 246  AGFINE-----FVSISTNLTDRCVYVSSDGGRLCRPYIIVKKGQPMVKNKHIEELTQGYR 300

Query: 603  PFEQVFMEIRCPDGGDGGRRNAFP-----------ATHEEIHPTGMLSVVANLTPYSDHN 651
             FE  F+     +  D    N               TH EI P  +L V A L PY  HN
Sbjct: 301  TFED-FLHESLVEYLDVNEENDCQIALYEHMINKDTTHLEIEPFTLLGVCAGLIPYPHHN 359

Query: 652  QSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTN 711
            QSPRN YQC M KQ MG      + R D  +Y L  PQ P+V+T T      ++ P G N
Sbjct: 360  QSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLGYPQKPMVKTRTIELIDFEKLPAGQN 419

Query: 712  AIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR--GQKLFRR 768
            A VAV++Y+GYD+EDA+ILNK+S+DRG     +Y+     L    N+  D+  G  L   
Sbjct: 420  ATVAVMSYSGYDIEDALILNKASLDRGFGRCLVYKNAKCTLRRYTNQTFDKVMGPMLDAA 479

Query: 769  NKDAKSLHSVIDSDGLPYVGQMI-----------------------HPGEPYCSIYDKTT 805
             +     HS++D+DG+   G+ +                        PG+P    Y    
Sbjct: 480  TRKPIWRHSILDADGICCPGEKVENKQVLVNKSMPTVTQTPLEGSAQPGQPQ---YRDVP 536

Query: 806  NSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCS 865
             S+     KGS   +++ V +          K  I  R TR P IGDKFSSRHGQKGVC 
Sbjct: 537  VSY-----KGSTDSYIEKVMISSNADDAFLIK--ILLRQTRRPEIGDKFSSRHGQKGVCG 589

Query: 866  QLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANS 925
             + P  DMPF   +G+ PD+I+NPH +PSRMT+  L+E +A K G + G+F   T F  S
Sbjct: 590  LIVPQEDMPFCD-SGICPDIIMNPHGYPSRMTVGKLIELLAGKAGVMDGRFHYGTAFGGS 648

Query: 926  VKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRL 985
                            V ++ E L   G+NY G + + SG+ G  +   I+ GPVYYQ+L
Sbjct: 649  K---------------VKDVCEDLIRYGYNYQGKDYVTSGITGEPIEAYIYFGPVYYQKL 693

Query: 986  RHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCS 1045
            +HMV DK   R+ G    +TRQP +GR R GG+R GEMERD L+ +GA+ LL +RL   S
Sbjct: 694  KHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISS 753

Query: 1046 DYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPY 1105
            D    DVC  CG +  + +                        CH C++S  + ++ +PY
Sbjct: 754  DAFEVDVCGQCGLLGYSGW------------------------CHYCKSSCHVSSLRIPY 789

Query: 1106 VFRYLAAELAAMNIKITLQLG 1126
              + L  EL +MNI   L+L 
Sbjct: 790  ACKLLFQELQSMNIIPRLKLA 810


>gi|358054058|dbj|GAA99857.1| hypothetical protein E5Q_06560 [Mixia osmundae IAM 14324]
          Length = 1327

 Score =  355 bits (910), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 315/1169 (26%), Positives = 507/1169 (43%), Gaps = 171/1169 (14%)

Query: 47   GKLMADVEFQYL----DAG-SPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAA 101
            G+L  + E +++    +AG   + + R   G+ P+M+K+R CHL   +   L +  E   
Sbjct: 206  GELDENGEIEWITEEDEAGMQQISQHREYLGKVPMMIKSRFCHLLKMEEDALFNADECPL 265

Query: 102  EMGGYFILNGLERVF--------RSVILPKQNYP-----MSMVRSSFRDRREGYTDKAVV 148
            + GGYFI+NG E+V          +V +  +  P     ++ +RS              V
Sbjct: 266  DKGGYFIINGSEKVLIAQERMAGNTVYVFGKAPPSPIAYLAEIRS--------------V 311

Query: 149  IRCVRKDQSSVTLKLYYLLN--------GSVRLGFWLQGKEYLLPVGIVLKALVDTNDLE 200
            +    +  SS+T+K+    N        GSV +   L      +P+ +V +AL    D +
Sbjct: 312  VESGSQTPSSLTVKMMRAGNPDKVGGATGSV-IRVTLPYIRADIPILVVFRALGIIPDKD 370

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAE---VQDLSLTTRLQCLQHIGEHFQP 257
            I  H+  CYD              + E +K  L E   VQD ++      L  IG   + 
Sbjct: 371  ILQHI--CYDPNDTD---------MYELLKPSLEEAFPVQDQNV-----ALDFIGR--RG 412

Query: 258  VIDGLQSESYYAVAETVIRDYIFVHLN----DNNDKFNLLIFMLQKLFSLVDHTSVSDNP 313
               GL  +     A  V++  +  H++     +  K     +M+ +L          D+ 
Sbjct: 413  TAAGLTRDKRIQYARDVLQKEVLPHVSTSAGSHQKKAYFFGYMIHRLLMAAMQRRDLDDR 472

Query: 314  DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKN 373
            D    + + L G L+    +   +  ++   + +Q  ++   K+F   N           
Sbjct: 473  DHFGKKRLDLAGPLVASLFRTLFKKMIKDVYRYLQKCVDTQ-KEFKMNNAIR-------- 523

Query: 374  PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
             +  I   ++  L TG    Q       RAG +    R  F   +S  R  +      G 
Sbjct: 524  -ASTITNGLKYSLATGNWGEQKKA-AAARAGVSQVLNRYTFASTLSHLRRTNTPIGRDG- 580

Query: 434  RTTSVRKLLPESWGFLCPVHTPDGEPCG------LLNHMTSTCRVASYYDSRGNIRDFSK 487
            +    R+L    WG +CP  TP+G+ CG      L++++T    +    D   +    S 
Sbjct: 581  KIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSYITVGTAIRPIIDFLQDWGSVSL 640

Query: 488  MRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVS 547
               + LR    V  +    + V   P  ++ VLL  R  G +      K V+ +R ++  
Sbjct: 641  EEVTDLRKGAKV-FVNGFWQGVHPNPDVLMKVLLRLRRTGTL-----NKSVSIVRDIRER 694

Query: 548  AASVIPDD-------LEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNIS-------LPSE 593
               +  D        L V    L L   +  L +      +     +++       L +E
Sbjct: 695  EIRIFADPGRVCRPLLIVQDQQLRLRRCHLDLLMRDPASDYAAGFDDMTNWGIVEFLDAE 754

Query: 594  ESQNIELIGPFEQVFMEIRCPDGGDGGR--------RNAFPA------THEEIHPTGMLS 639
            E +   +   +E +       D     +        R+A  A      TH EIHP  +L 
Sbjct: 755  EEEMAMICMTYEDLEAAYYAHDKDHAKQGVDPTARLRSAITASQAQRWTHCEIHPAMILG 814

Query: 640  VVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYT 699
            + A++ P+ DHNQSPRN YQ  M KQ MG  +   + R D     L  PQ P+  T +  
Sbjct: 815  ICASIIPFPDHNQSPRNTYQSAMGKQAMGVYLTNYQVRLDTMANILFYPQKPLATTRSMD 874

Query: 700  KYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGN-K 758
                 + P G NAIVA+L Y+GY+ ED++I+N+S++DRG+     Y+T        G  +
Sbjct: 875  YLHFRQLPAGQNAIVAILCYSGYNQEDSVIMNQSAIDRGLFRSFYYRTYMDTEKRQGALQ 934

Query: 759  VDRGQKLFRRN--KDAKSLHSVIDSDGLPYVGQMIHPGE-------PYCSIYDKTTNSWR 809
            ++  +K  R +  +  +  +  +  DG   VG+ +  G+       P     ++     +
Sbjct: 935  MESFEKPSRLDTLRLKRGTYDKLGDDGFVRVGEQVRGGDIIIGKTAPIAPDSEELGQRTK 994

Query: 810  TNSR-------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKG 862
             + +       K +E  ++D V +   N+  L + A +R R TR P  GDKF+SRHGQKG
Sbjct: 995  DHVKRDVSTPLKSTEEGYIDRVMI-TTNADGL-KFAKVRVRSTRIPQTGDKFASRHGQKG 1052

Query: 863  VCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPF 922
                 +   DMPF+   G+ PDLIINPHA PSRMTI  L+E + +K  +L G+  DATPF
Sbjct: 1053 TIGITYQQNDMPFTS-EGIVPDLIINPHAIPSRMTIGHLVECLLSKVSALTGQEGDATPF 1111

Query: 923  ANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYY 982
            ++                 VD +  +L+  GF   G+E++ +G  G +L  ++++GP YY
Sbjct: 1112 SDVT---------------VDSVSSVLKAQGFQDRGLEIMSNGHTGRKLAAQVYLGPTYY 1156

Query: 983  QRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLH 1042
            QRL+HMV DK   R+ G +  +TRQP++GR R GG+RFGEMERD ++AHG A  L +R+ 
Sbjct: 1157 QRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMIAHGVAGFLKERMF 1216

Query: 1043 TCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVA 1102
              SD     VC +CG    A  +                   +   C AC+    +  V 
Sbjct: 1217 EASDAFRIHVCDICGMTAIANLMK------------------QTFECRACKNKTAISQVL 1258

Query: 1103 MPYVFRYLAAELAAMNIKITLQLGDGATA 1131
            +PY  + L +EL AMNI   +    GA A
Sbjct: 1259 VPYSAKLLFSELQAMNIATRIVFTKGAGA 1287


>gi|344288485|ref|XP_003415980.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
            [Loxodonta africana]
          Length = 1010

 Score =  355 bits (910), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 289/980 (29%), Positives = 442/980 (45%), Gaps = 123/980 (12%)

Query: 184  LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTT 243
            +P+ IV +AL   +D +I  H+   +++           P + E VK  L E     +  
Sbjct: 103  VPIIIVFRALGFVSDRDILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQE 149

Query: 244  RLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQK 299
            +   L  IG   +    G+  E     A+ V++  +  H+  ++     K   L +M+ +
Sbjct: 150  QNVALNFIGS--RGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHR 207

Query: 300  LFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFD 359
            L          D+ D   N+ + L G L+    +   ++ L++ +   Q  I + GK F+
Sbjct: 208  LLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFI-DRGKDFN 266

Query: 360  FFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFIS 419
               LA IK       ++ I   ++  L TG    Q     Q RAG +    RL F   +S
Sbjct: 267  L-ELA-IK-------TRIISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLS 316

Query: 420  FFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSR 479
              R ++      G +    R+L    WG +CP  TP+G   GL+ ++     ++      
Sbjct: 317  HLRRLNSPIGRDG-KLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS------ 369

Query: 480  GNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVA 539
                      + IL  L    M  +L ++  +       + ++G  VG+    + E+++ 
Sbjct: 370  -----VGSQPSPILEFLEEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMN 421

Query: 540  HLRRLK------VSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSE 593
             LR+L+      VS  S+I D  E      +  G      L     K +   R+I    E
Sbjct: 422  TLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKE 481

Query: 594  ESQN------------IELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLS 639
               N            +E I   E+  V + +   D  +         TH EIHP+ +L 
Sbjct: 482  REYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILG 541

Query: 640  VVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYT 699
            V A++ P+ DHNQSPRN YQ  M KQ MG  +     R D   + L  PQ P+V T +  
Sbjct: 542  VCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSME 601

Query: 700  KYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV 759
                 E P G N+IVA+ +YTGY+ ED++I+N+S+VDRG      Y++     S  G   
Sbjct: 602  YLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKG--F 659

Query: 760  DRGQKLFRRNKDA-----KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRT 810
            D+ +   +  ++       +++  +D DGL   G  +   +       ++ +       T
Sbjct: 660  DQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELEST 719

Query: 811  NSR----------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQ 860
            N R          + SE+  VD V V +       +   IR R  R P IGDKF+SRHGQ
Sbjct: 720  NRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQ 777

Query: 861  KGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDAT 920
            KG C   +   DMPF+   G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DAT
Sbjct: 778  KGTCGIQYRQEDMPFT-CEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDAT 836

Query: 921  PFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPV 980
            PF ++V               V ++  +L   G++  G EVLY+G  G ++T +IFIGP 
Sbjct: 837  PFNDAVN--------------VQKISNLLSEYGYHLRGNEVLYNGFTGRKITSQIFIGPT 882

Query: 981  YYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDR 1040
            YYQRL+HMV DK   R+ G +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +R
Sbjct: 883  YYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRER 942

Query: 1041 LHTCSDYHVADVCSLCGSVLTA-TFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGME 1099
            L   SD +   VC+LCG +  A T  H  +                   C  C+    + 
Sbjct: 943  LFEASDPYQVHVCNLCGIMAIANTRTHTYE-------------------CRGCRNKTQIS 983

Query: 1100 TVAMPYVFRYLAAELAAMNI 1119
             V MPY  + L  EL +M+I
Sbjct: 984  LVRMPYACKLLFQELMSMSI 1003


>gi|393794931|ref|ZP_10378295.1| DNA-directed RNA polymerase subunit B [Candidatus Nitrosoarchaeum
            limnia BG20]
          Length = 1115

 Score =  355 bits (910), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 323/1202 (26%), Positives = 512/1202 (42%), Gaps = 214/1202 (17%)

Query: 15   LVRHHIESFDYMLDEGLSEMFDHCRQAKI--------------------------SYTGK 48
            + R H+ SFD  L+ GL  + +   Q +I                          S T  
Sbjct: 21   IARQHLNSFDEFLERGLQSIINEVGQIEIENAEYPYKIQLGKVKLQQPRMMELDGSITHI 80

Query: 49   LMADVEFQYLDAGSPVVRE------------RF-NFGQFPVMLKTRRCHLQGADSQKLVS 95
              A+   + +   +PV+ E            RF + G  PVM K+  C L    +QKL+ 
Sbjct: 81   TPAEARLRNVSYSAPVMMEASVVEDGKILESRFVHIGDVPVMAKSNACILHNFSTQKLIE 140

Query: 96   LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
              E+  + GGYFI+NG ERV   V L   +Y   +V       RE      V    V   
Sbjct: 141  HGEDPNDPGGYFIINGSERVI--VGLEDLSYNKIIVD------RESVGGNTVFKAKVYSS 192

Query: 156  QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
                  KL  ++     +   + G    +PV  + +AL   +D EI   ++   DE   +
Sbjct: 193  IVGYRAKLELVMKNDGLIVARIPGSPVDIPVVTLTRALGLESDREIAAAVSLV-DEIQNE 251

Query: 216  EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
             +G+               +  D+   T    + +I +   P   G+  E     AET++
Sbjct: 252  LEGS-------------FEKAGDVP--TAKDAIVYISKRIAP---GMLEEFQIKRAETLL 293

Query: 276  RDYIFVHL----NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIY 331
               +  HL     +  +K   L     KL  L       D+ D   N+ I   G ++   
Sbjct: 294  DWGLLPHLGKHPENRKEKAQFLGEAACKLLELKLGWISPDDKDHYGNKVIKFAGQMLADL 353

Query: 332  LKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRL 391
             +    + +R  K     ++E +G+K                    +  +I   + T +L
Sbjct: 354  FRTAFRNLVRDMKY----QLERSGQKRGI---------------NAVAAAIRPGIITDKL 394

Query: 392  --ATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT---SVRKLLPESW 446
              A  TG   + R G T   +R N+L  IS  R +    S    RT      R L    +
Sbjct: 395  NNAIATGNWGRGRVGVTQLLDRTNYLSTISHLRRIQSPLS----RTQPNFEARDLHATHF 450

Query: 447  GFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLP 506
            G +CP  TP+G  CGL+ ++  +  ++    S   +     + T        +    +  
Sbjct: 451  GRICPSETPEGSNCGLVKNLALSGIISVNVPSEEIVEKLYDLGT--------IHFFDAKE 502

Query: 507  KLVKSGPPAVLSVLLDGRVVGVIPS-SEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
             + K G      + +DGR++G     +++ + +  LRR      S I   + + +    +
Sbjct: 503  DVKKDGA----RIFVDGRLIGYYKDGAQLAESLRDLRR-----NSKIHPHVGISFHKSEI 553

Query: 566  GGAYPGLYLFTSPPKFVRPV---------------RNISLPSEESQNIELIGPFEQVFM- 609
             G+   LY+  +  + +RP+                 IS       ++  +G  E +   
Sbjct: 554  EGSTKRLYVNCNAGRVLRPLIIIKDNKPLLTQDLLDKISKKLLSWTDLLRMGVLEMIDAN 613

Query: 610  -EIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMG 668
             E  C    D   ++    TH E+ P  +L   A++ PY +HNQSPRN Y+  MAKQ++G
Sbjct: 614  EEENCYITLD--EKDTKKHTHLEVFPPAILGAGASIIPYPEHNQSPRNTYESAMAKQSLG 671

Query: 669  FSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAM 728
            FS   +      + + +  PQTPIV T      G+++ P G N +VAVL + GY++EDA+
Sbjct: 672  FSTPMMNTSTYVRQHLMLYPQTPIVNTKAMKLLGLEDRPAGQNCVVAVLPFDGYNIEDAI 731

Query: 729  ILNKSSVDRGMCHG---QIYQTET------------IDLSDDGNKVDRGQKLFRRNKDAK 773
            +L+++SVDRG+      +IY  E             I  ++D  +  +G+K +R      
Sbjct: 732  VLSRASVDRGLGRTFFFRIYDAEAKQYPGGMRDTFEIPNAEDNIRGYKGEKAYR------ 785

Query: 774  SLHSVIDSDGLPYVGQMIHPG-------------EPYCSIYDKTTNSWRTNSRKG---SE 817
                +++ DG+      +H G             E Y     +++  +R ++  G   SE
Sbjct: 786  ----LLEEDGVVASESPVHGGDILIGKTSPPRFMEEYREF--ESSGPYRRDTSIGVRPSE 839

Query: 818  SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
            +  VD V +   N      K  IR R  R P IGDKF+SRHGQKGV   L    D+P++ 
Sbjct: 840  TGVVDTVVMTQSNEGGKMYK--IRVRDMRIPEIGDKFASRHGQKGVLGILAKAEDLPYTA 897

Query: 878  VTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDE 937
              G+ PD++INPHAFPSRMT+ M +ES+  K  +L G   D + F               
Sbjct: 898  -DGISPDVLINPHAFPSRMTVGMFMESICGKAAALRGSQFDGSAFVGEK----------- 945

Query: 938  SKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRS 997
                ++E+  ++   GF Y G E +Y G  G     E+FIG VYYQ+L HMV+DK   R+
Sbjct: 946  ----MEEVKPVMDAAGFKYSGKETMYDGRTGKSFPVEVFIGVVYYQKLHHMVADKIHARA 1001

Query: 998  TGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCG 1057
             G +  +T+QP +GR RGGG+RFGEMERD L+A+GA+ +L DRL   SD     VC  CG
Sbjct: 1002 RGQVQMLTKQPTEGRARGGGLRFGEMERDCLIAYGASMILKDRLLDESDKSDIFVCERCG 1061

Query: 1058 SVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAM 1117
             V      H  K+              +K  C  C     + +V++ Y F+ L  E+ ++
Sbjct: 1062 LVA----YHDVKQ--------------RKYVCRVCGDKAKVSSVSVAYAFKLLLQEMQSL 1103

Query: 1118 NI 1119
            N+
Sbjct: 1104 NV 1105


>gi|329765755|ref|ZP_08257324.1| DNA-directed RNA polymerase subunit beta [Candidatus Nitrosoarchaeum
            limnia SFB1]
 gi|329137821|gb|EGG42088.1| DNA-directed RNA polymerase subunit beta [Candidatus Nitrosoarchaeum
            limnia SFB1]
          Length = 1115

 Score =  354 bits (909), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 323/1202 (26%), Positives = 512/1202 (42%), Gaps = 214/1202 (17%)

Query: 15   LVRHHIESFDYMLDEGLSEMFDHCRQAKI--------------------------SYTGK 48
            + R H+ SFD  L+ GL  + +   Q +I                          S T  
Sbjct: 21   IARQHLNSFDEFLERGLQSIINEVGQIEIENAEYPYKIQLGKVKLQQPRMMELDGSITHI 80

Query: 49   LMADVEFQYLDAGSPVVRE------------RF-NFGQFPVMLKTRRCHLQGADSQKLVS 95
              A+   + +   +PV+ E            RF + G  PVM K+  C L    +QKL+ 
Sbjct: 81   TPAEARLRNVSYSAPVMMEASVVEDGKILESRFVHIGDVPVMAKSNACILHNFSTQKLIE 140

Query: 96   LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
              E+  + GGYFI+NG ERV   V L   +Y   +V       RE      V    V   
Sbjct: 141  HGEDPNDPGGYFIINGSERVI--VGLEDLSYNKIIVD------RESVGGNTVFKAKVYSS 192

Query: 156  QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
                  KL  ++     +   + G    +PV  + +AL   +D EI   ++   DE   +
Sbjct: 193  IVGYRAKLELVMKNDGLIVARIPGSPVDIPVVTLTRALGLESDREIAAAVSLV-DEIQNE 251

Query: 216  EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
             +G+               +  D+   T    + +I +   P   G+  E     AET++
Sbjct: 252  LEGS-------------FEKAGDVP--TAKDAIVYISKRIAP---GMLEEFQIKRAETLL 293

Query: 276  RDYIFVHL----NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIY 331
               +  HL     +  +K   L     KL  L       D+ D   N+ I   G ++   
Sbjct: 294  DWGLLPHLGKHPENRKEKAQFLGEAACKLLELKLGWISPDDKDHYGNKVIKFAGQMLADL 353

Query: 332  LKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRL 391
             +    + +R  K     ++E +G+K                    +  +I   + T +L
Sbjct: 354  FRTAFRNLVRDMKY----QLERSGQKRGI---------------NAVSAAIRPGIITDKL 394

Query: 392  --ATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT---SVRKLLPESW 446
              A  TG   + R G T   +R N+L  IS  R +    S    RT      R L    +
Sbjct: 395  NNAIATGNWGRGRVGVTQLLDRTNYLSTISHLRRIQSPLS----RTQPNFEARDLHATHF 450

Query: 447  GFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLP 506
            G +CP  TP+G  CGL+ ++  +  ++    S   +     + T        +    +  
Sbjct: 451  GRICPSETPEGSNCGLVKNLALSGIISVNVPSEEIVEKLYDLGT--------IHFFDAKE 502

Query: 507  KLVKSGPPAVLSVLLDGRVVGVIPS-SEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
             + K G      + +DGR++G     +++ + +  LRR      S I   + + +    +
Sbjct: 503  DVKKDGA----RIFVDGRLIGYYKDGAQLAESLRDLRR-----NSKIHPHVGISFHKSEI 553

Query: 566  GGAYPGLYLFTSPPKFVRPV---------------RNISLPSEESQNIELIGPFEQVFM- 609
             G+   LY+  +  + +RP+                 IS       ++  +G  E +   
Sbjct: 554  EGSTKRLYVNCNAGRVLRPLIIIKDNKPLLTQDLLDKISKKLLSWTDLLRMGVLEMIDAN 613

Query: 610  -EIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMG 668
             E  C    D   ++    TH E+ P  +L   A++ PY +HNQSPRN Y+  MAKQ++G
Sbjct: 614  EEENCYITLD--EKDTKKHTHLEVFPPAILGAGASIIPYPEHNQSPRNTYESAMAKQSLG 671

Query: 669  FSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAM 728
            FS   +      + + +  PQTPIV T      G+++ P G N +VAVL + GY++EDA+
Sbjct: 672  FSTPMMNTSTYVRQHLMLYPQTPIVNTKAMKLLGLEDRPAGQNCVVAVLPFDGYNIEDAI 731

Query: 729  ILNKSSVDRGMCHG---QIYQTET------------IDLSDDGNKVDRGQKLFRRNKDAK 773
            +L+++SVDRG+      +IY  E             I  ++D  +  +G+K +R      
Sbjct: 732  VLSRASVDRGLGRTFFFRIYDAEAKQYPGGMRDTFEIPNAEDNIRGYKGEKAYR------ 785

Query: 774  SLHSVIDSDGLPYVGQMIHPG-------------EPYCSIYDKTTNSWRTNSRKG---SE 817
                +++ DG+      +H G             E Y     +++  +R ++  G   SE
Sbjct: 786  ----LLEEDGVVASESPVHGGDILIGKTSPPRFMEEYREF--ESSGPYRRDTSIGVRPSE 839

Query: 818  SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
            +  VD V +   N      K  IR R  R P IGDKF+SRHGQKGV   L    D+P++ 
Sbjct: 840  TGVVDTVVMTQSNEGGKMYK--IRVRDMRIPEIGDKFASRHGQKGVLGILAKAEDLPYTA 897

Query: 878  VTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDE 937
              G+ PD++INPHAFPSRMT+ M +ES+  K  +L G   D + F               
Sbjct: 898  -DGISPDVLINPHAFPSRMTVGMFMESICGKAAALRGSQFDGSAFVGEK----------- 945

Query: 938  SKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRS 997
                ++E+  ++   GF Y G E +Y G  G     E+FIG VYYQ+L HMV+DK   R+
Sbjct: 946  ----MEEVKPVMDAAGFKYSGKETMYDGRTGKSFPVEVFIGVVYYQKLHHMVADKIHARA 1001

Query: 998  TGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCG 1057
             G +  +T+QP +GR RGGG+RFGEMERD L+A+GA+ +L DRL   SD     VC  CG
Sbjct: 1002 RGQVQMLTKQPTEGRARGGGLRFGEMERDCLIAYGASMILKDRLLDESDKSDIFVCERCG 1061

Query: 1058 SVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAM 1117
             V      H  K+              +K  C  C     + +V++ Y F+ L  E+ ++
Sbjct: 1062 LVA----YHDVKQ--------------RKYVCRVCGDKAKVSSVSVAYAFKLLLQEMQSL 1103

Query: 1118 NI 1119
            N+
Sbjct: 1104 NV 1105


>gi|328859896|gb|EGG09004.1| hypothetical protein MELLADRAFT_47615 [Melampsora larici-populina
            98AG31]
          Length = 1257

 Score =  354 bits (909), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 305/1128 (27%), Positives = 490/1128 (43%), Gaps = 154/1128 (13%)

Query: 71   FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSM 130
             G+ P+ML++  C L   D + L  L E   + GGYF++NG E+V  +      N+    
Sbjct: 185  IGKVPIMLRSEFCILDKLDDRGLYDLNECPFDQGGYFVINGSEKVLIAQERMAANHVYVF 244

Query: 131  VRS-----SFRDRREGYTDKAVVIRCVRKDQSSVTLKLY-----YLLNGSVRLGFWLQGK 180
             ++     SF        +K        K  S++ +K++         G   +   L   
Sbjct: 245  AKAAPSPISFLSEIRSAVEKG------SKTVSTMQVKMFGGHKAEKAGGGATIKTTLPYI 298

Query: 181  EYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLS 240
               +P+ +V +AL    D +I +H+  CYD +   +   +  P + +   I   EV    
Sbjct: 299  RNDIPIVVVFRALGIIPDKDILDHI--CYD-RNDIDMFEMLKPCLEDSFPIQEQEV---- 351

Query: 241  LTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLN----DNNDKFNLLIFM 296
                   L  IG   +    GL  E     AE +++  +  H++        K     +M
Sbjct: 352  ------ALDFIGR--RGTATGLSREKRLKYAEEILQKEMLPHISMSEGQQGKKAYFFGYM 403

Query: 297  LQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGK 356
            + +L          D+ D    + + L G L+    +       +   + +Q  +E    
Sbjct: 404  VHRLLLAALERRDLDDRDHFGKKRLDLAGPLLAGLFRMLFRKLTKDVYRHLQKCVEMQKP 463

Query: 357  KFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLR 416
                FNL    K      S  I   ++  L TG    Q    +Q RAG +    R  F  
Sbjct: 464  ----FNLNTAVK------SNTITNGLKYSLATGNWGDQKKA-MQARAGVSQVLNRYTFAS 512

Query: 417  FISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHM---------T 467
             +S  R  +      G +    R+L    WG +CP  TP+G+ CGL+ ++         +
Sbjct: 513  TLSHLRRCNTPIGRDG-KIAKPRQLHNSHWGMVCPAETPEGQACGLVKNLALMSYISVGS 571

Query: 468  STCRVASYYDSRG--NIRDFSKMRTSILRVLI-----GVGMIP-----SLPKLVKSG--P 513
             +  +  + +  G  ++ +FS    +  +V +     GV   P     ++ +L + G   
Sbjct: 572  PSAPIVEFLEEWGMESLDEFSADMATGTKVFVNGVWQGVHRSPAELLDTIKRLRRCGDIE 631

Query: 514  PAV----------LSVLLDG----RVVGVIPSSEIEKVVAHLRRLKVSAAS-------VI 552
            P V          L V  DG    R + ++ + ++     H+  L     +       ++
Sbjct: 632  PEVSVVRDVRERELRVFTDGGRVCRPLFIVENQQLLLTKDHVEWLSNGYVTGTEDPNGIV 691

Query: 553  PDD--LEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFME 610
            P+D     G+  L   G     YL     + V     I +  E+ +         QV  E
Sbjct: 692  PEDEGQPFGWSQLVAKGIVE--YLDAEEEETVM----ICMTPEDLEQSREYQETGQVPKE 745

Query: 611  IRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMG 668
            +  P     G  + +  T  H EIHP  +L + A++ P+ DHNQSPRN YQ  M KQ MG
Sbjct: 746  VFDPAARLKGNTSMYSHTWTHCEIHPAMILGICASIIPFPDHNQSPRNTYQSAMGKQAMG 805

Query: 669  FSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAM 728
              +   + R D     L  PQ P+  T +       E P G NAIVA+L Y+GY+ ED++
Sbjct: 806  VYLTNFRMRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAIVAILCYSGYNQEDSV 865

Query: 729  ILNKSSVDRGMCHGQIYQTETIDLSDDGN-KVDRGQKLFRRN--KDAKSLHSVIDSDGLP 785
            I+N+SS+DRG+     Y++        G  +++  +K  R N  +     +  +D DG+ 
Sbjct: 866  IMNQSSIDRGLFRSFYYRSYMDQEKKAGALQMEEFEKPSRENTLRLKHGTYEKLDDDGII 925

Query: 786  YVGQ-------MIHPGEPYCSIYDKTTNSWRTNSR-------KGSESVFVDYVAVDMKNS 831
              G        +I    P     ++     +T+++       K +E+  +D V +   N 
Sbjct: 926  TPGTRVSGDDIIIGKTAPIPPDSEELGQRMKTHTKRDVSMPLKSTENGIIDQVLI-TTNQ 984

Query: 832  KNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHA 891
              L +   +R R TR P  GDKF+SRHGQKG    L+   DMPF+   G+ PD+IINPHA
Sbjct: 985  DGL-KFVKVRIRSTRIPETGDKFASRHGQKGTVGILYRQEDMPFTS-EGICPDIIINPHA 1042

Query: 892  FPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRT 951
             PSRMTI  L+E + +K  ++ G   DATPF               S+  V+ +  +L+ 
Sbjct: 1043 IPSRMTIGHLVECLLSKVSTITGNEGDATPF---------------SEVTVEAISSLLKD 1087

Query: 952  CGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKG 1011
             G+   G+E++Y+G  G +L  + ++GP YYQRL+HMV+DK   R+ G +  +TRQP++G
Sbjct: 1088 NGYQSRGLEIMYNGHTGRKLRAQCYLGPTYYQRLKHMVNDKIHSRARGPVQILTRQPVEG 1147

Query: 1012 RKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRA 1071
            R R GG+RFGEMERD +++HG A  L +R+   SD +   VC +CG V  A         
Sbjct: 1148 RSRDGGLRFGEMERDCMISHGIAGFLKERMFDVSDAYRVHVCDICGMVAIANL------- 1200

Query: 1072 IREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
                         +   C AC+    +  V +PY  + L  EL +MNI
Sbjct: 1201 -----------KKQSFECRACRNKTAISQVYIPYAAKLLFQELQSMNI 1237


>gi|2654279|emb|CAA47069.1| DNA-directed RNA polymerase [Euplotes octocarinatus]
          Length = 1194

 Score =  354 bits (909), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 290/1107 (26%), Positives = 486/1107 (43%), Gaps = 148/1107 (13%)

Query: 71   FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSM 130
             G+ PVM+++  C L G D  +   +KE   + GGYFI+NG E+V    I+  +    + 
Sbjct: 169  MGKVPVMVRSGFCSLNGIDESERWEMKECFHDQGGYFIINGGEKV----IVAHERMANNF 224

Query: 131  VRSSFRDRREGYTDKAVV---IRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---- 183
            V    + +   ++  A V   +    +  +  ++K+Y    G  R G    G +      
Sbjct: 225  VYVFHKKQPSKFSWVAEVRSQVDASNRPPNQFSIKMYS--KGQRRAGGSFSGGKIFGQTL 282

Query: 184  ----------LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIIL 233
                      +PV I+ +AL   +D EI + +  CYD        A+ + L         
Sbjct: 283  CASIPYINADIPVAILFRALNCISDKEILDRI--CYDSTDSHMMEAMRASLE-------- 332

Query: 234  AEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNND----K 289
               +     T+   L +IG   +    G+  E     A  +++ +   H++  +     K
Sbjct: 333  ---EGTPFLTQEDALSYIGS--RGTAGGVGREERIRHAREILKRHFLPHVSTKDSCESQK 387

Query: 290  FNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQD 349
               + +M  +L +        D+ D    + + + G L+ +  +     ++++  + ++ 
Sbjct: 388  SYFIGYMCHRLLNAHLGRIKEDDRDHYGKKRLDMAGSLLGMLFRNLFRRFVKEAGRYLKA 447

Query: 350  EIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQA 409
            + +         +  NI K  +K+    I   ++  L TG   T    ++  + G +   
Sbjct: 448  QADKG-------DSLNITKAFKKDI---ISDGLKYALATGNWGTNAAGEVS-KTGVSQVL 496

Query: 410  ERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTST 469
             RL F   +S  R ++     +G + T  R+L    WG +CP  TP+G+ CGL+ +++  
Sbjct: 497  NRLTFASTLSHLRRLNTPLQKSG-KLTKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLM 555

Query: 470  CRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVI 529
              V+                  +  +L   G   +L  +  S       V ++G  +G+ 
Sbjct: 556  AFVS-----------VGSAAERLREILENYG-TENLVSISPSDIHESTKVFVNGCWIGI- 602

Query: 530  PSSEIEKVVAHLRRLKVSAASVIPDDLE-VGYVP-------LSLGGAYPGLYLFTSPPKF 581
              +E E ++ +++ ++   A +IP ++  V  +P          G     L++       
Sbjct: 603  -HNESEDLINNIKLMR--RALLIPKEISIVRDIPNREVKFYTDHGRVQRPLFIVDDNRLI 659

Query: 582  VRPVRNISLPSEESQN------------IELIGPFEQVFMEIRCPDGGDGGRRNAFPATH 629
            ++    + L   E  +            +E +   E+    I    G    R      TH
Sbjct: 660  LKKTHVVRLQDHERSDSMNFDDTLKEGLVEFLDVEEEETSMIAMNVGDLENRNYCSTYTH 719

Query: 630  EEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQ 689
             EIHP+ +L V A++ P+ DHNQSPRN YQ  M KQ MG      + R D   + L  PQ
Sbjct: 720  CEIHPSMILGVCASIIPFPDHNQSPRNCYQSAMGKQAMGVYCSNYQIRMDTLAHVLYYPQ 779

Query: 690  TPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTET 749
             P+V   +     + E P G ++IVA+  YTGY+  D++I++++ +DRG C   ++    
Sbjct: 780  KPLVVARSLDFPHVKELPPGCDSIVAITCYTGYNQVDSVIMSQAPIDRG-CFRSVFYKNI 838

Query: 750  IDLSDDGNKVDR---GQKLFRRNKDAKSLHSVIDSDGLPY-----------VGQMIHPGE 795
             ++     ++ R      + RRN D    ++ +D DGL +           +G+   P  
Sbjct: 839  FEIPVRVERLLRYPDSTVVGRRNGD----YTKLDIDGLIFPGKNVLGDDIIIGKTALPRN 894

Query: 796  PYCSIYDKTTNSWR---TNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGD 852
             +    D  TN  +   + S + SE   +D  +V + +++       ++ R  R P IGD
Sbjct: 895  LFNDEMDDQTNLIKKDDSTSLRHSEKGIID--SVILTSNEEGDSFTKVKMRAIRIPQIGD 952

Query: 853  KFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSL 912
            KF+SRHGQKG     +   D+PF+   G+ PD+I+NPHA PSRMTI  L+E +A+K    
Sbjct: 953  KFASRHGQKGTVGMTYRQEDIPFTQ-EGIIPDIIVNPHAIPSRMTIGHLIECLASKVACF 1011

Query: 913  HGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELT 972
             G+  DATPF +                 V+ +   L   G+   G EV+Y G  G ++ 
Sbjct: 1012 KGEEGDATPFQDVT---------------VEHISNDLHRLGYQKRGNEVMYDGWTGRKMD 1056

Query: 973  CEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHG 1032
              IF+GP YYQRL+HMV DK   RS G +  +TRQP +GR R GG+RFGEMERD +++HG
Sbjct: 1057 TMIFLGPTYYQRLKHMVDDKIHSRSRGPLQILTRQPTEGRSRHGGLRFGEMERDCMVSHG 1116

Query: 1033 AAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHAC 1092
            AA  L +RL   SD +   VC +CG +  A                      +K  C  C
Sbjct: 1117 AARFLKERLFDVSDCYTVHVCRICGLICEANL------------------RQQKYLCRGC 1158

Query: 1093 QTSKGMETVAMPYVFRYLAAELAAMNI 1119
            Q S  +  V +PY  + L  EL AM I
Sbjct: 1159 QNSTNICQVGLPYACKLLFQELMAMQI 1185


>gi|119872217|ref|YP_930224.1| DNA-directed RNA polymerase subunit B [Pyrobaculum islandicum DSM
            4184]
 gi|119673625|gb|ABL87881.1| DNA-directed RNA polymerase, subunit B' [Pyrobaculum islandicum DSM
            4184]
          Length = 1127

 Score =  354 bits (908), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 268/855 (31%), Positives = 407/855 (47%), Gaps = 122/855 (14%)

Query: 311  DNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVM 370
            D+ D + N+ + L G L+T   +   + +L++ K  ++           ++    I    
Sbjct: 354  DDKDHVANKRVRLVGDLMTQLFRTVFKQFLQELKSQLEK----------YYARGRI---- 399

Query: 371  EKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASF 430
               P  Q     + + +  R A  TG  +  + G +   +R N++  +S+ R V    S 
Sbjct: 400  ---PHIQTIVRPDIITERVRQALATGNWVGGKTGVSQILDRTNYMSTLSYLRRVVSSLS- 455

Query: 431  AGLRTT---SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSK 487
               RT      R L P  WG LC V TP+G+  GL+ ++     + +  D          
Sbjct: 456  ---RTQPHFEARDLHPTQWGRLCAVETPEGQNVGLVKNLALLAEITTGVDE--------- 503

Query: 488  MRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPS-SEIEKVVAHLRRLKV 546
                + ++L  +G++P L K    G      V ++GR++G+ P+  E+ + V  LRR   
Sbjct: 504  --GEVEQLLYNLGVVPIL-KARDEGIRGA-EVYINGRLIGIHPNPDELARTVRSLRR--- 556

Query: 547  SAASVIPDDLEVGYVPLSL-----GGAYPGLYLFTSPPKF------VRPVRNISLPSEES 595
                 I D++ +  +  ++     GG      L     K       V  VR   L  ++ 
Sbjct: 557  --QGKISDEINIAVLNNAVYVNCDGGRIRRPLLVVENGKLKLTKEIVEKVRRGELTWDDL 614

Query: 596  QN---IELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQ 652
                 IE +   E+    I      D  +      TH EI P+ +L  VA++ PY +HNQ
Sbjct: 615  VKMGVIEYLDADEEENAYIATDPHDDLSK-----YTHVEIIPSAILGAVASIIPYLEHNQ 669

Query: 653  SPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNA 712
            SPRN Y+  MAKQ++G       ++ D + + L  P+ PIV T      G  + P G NA
Sbjct: 670  SPRNQYEAAMAKQSLGLPQSNFLYKLDSRGHMLYYPERPIVTTRGLELIGYSKKPAGQNA 729

Query: 713  IVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-------------ETIDLSDDGNKV 759
            +VA+L YTGY+MEDA+ILNK++V+RGM     Y+T             + I++ D   K 
Sbjct: 730  VVALLTYTGYNMEDAIILNKAAVERGMFRSVFYRTYETEEQKYPGGEEDKIEVPDSSVKG 789

Query: 760  DRGQKLFRR-NKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNS----RK 814
             RG + +   ++D  +   V  S     +G+   P   Y ++  +     R +S    R+
Sbjct: 790  YRGPEAYSHLDEDGIAPPEVYVSSNEVIIGKT-SPPRFYTTLETERILKERRDSSVAVRR 848

Query: 815  GSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMP 874
            G + + VD V +      N  +   +R R  R P +GDKF+SRHGQKGV   +    DMP
Sbjct: 849  GEKGI-VDRVIITESPEGN--RLVKVRLRELRIPELGDKFASRHGQKGVVGMILRHEDMP 905

Query: 875  FSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTG 934
            F+   G+ PD+I+NPHA PSRMT+  LLES+A K G+  G  +DATPF           G
Sbjct: 906  FTE-EGIVPDIIVNPHALPSRMTVGQLLESIAGKIGASLGALVDATPFE----------G 954

Query: 935  TDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQ 994
              E     +EL ++L   G+ + G EV+YSG+ G +L  +IFIG VYYQ+L HMV+DK  
Sbjct: 955  VKE-----EELRKLLMKLGYKWDGKEVMYSGITGEKLVADIFIGVVYYQKLHHMVADKIH 1009

Query: 995  VRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCS 1054
             R+ G +  +TRQP +GR R GG+R GEMERD L+AHGA+ LL++RL   SD +   VC 
Sbjct: 1010 ARARGPVQILTRQPTEGRSREGGLRLGEMERDVLIAHGASALLYERLVESSDKYTMYVCE 1069

Query: 1055 LCG--SVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAA 1112
            LCG  + L A    P+                    C     +     V +PY F+ L  
Sbjct: 1070 LCGLPAYLDARTNKPR--------------------CPIHGDTGQFAKVIVPYAFKLLLQ 1109

Query: 1113 ELAAMNIKITLQLGD 1127
            EL A+ I   L+L +
Sbjct: 1110 ELIALGIYPKLELSE 1124



 Score = 53.5 bits (127), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 1/62 (1%)

Query: 57  YLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVF 116
           Y+D   P V E F  G+ P+M+K++RC+L      + V   E+  + GGYFI+NG ERV 
Sbjct: 117 YVD-DEPYVTETFYIGELPIMVKSKRCNLTRLKPSEYVKKFEDPQDFGGYFIINGSERVI 175

Query: 117 RS 118
            S
Sbjct: 176 IS 177


>gi|396466479|ref|XP_003837699.1| hypothetical protein LEMA_P122340.1 [Leptosphaeria maculans JN3]
 gi|312214262|emb|CBX94255.1| hypothetical protein LEMA_P122340.1 [Leptosphaeria maculans JN3]
          Length = 941

 Score =  353 bits (905), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 201/460 (43%), Positives = 265/460 (57%), Gaps = 67/460 (14%)

Query: 711  NAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQ---KLFR 767
            NA+VAV++YTGYDM+DAMILNKS+ +RG  +G IY+T+  DL +   K   G+   K+F 
Sbjct: 502  NAVVAVISYTGYDMDDAMILNKSAHERGFGYGTIYKTKICDLEEGSRKNRSGRTITKMFG 561

Query: 768  RNKDA---KSLHSVIDSDGLPYVGQMIHPGEPYCSI----YDKTTNSWRTNSRKGS---- 816
               +          +D DG P +G M+  G+   +     YD   + +     + S    
Sbjct: 562  FAPEGFVKAESKETLDEDGFPRIGTMLRSGDVIAAWHTVSYDPAADDYINRDGQTSFFKY 621

Query: 817  ---ESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDID 872
               E  FV+ V +        P QK +I+ R  R P+IGDKFSSRHGQKGV SQ WP ID
Sbjct: 622  KEDELAFVEEVRIIGSEDGTQPCQKISIKLRVPRLPVIGDKFSSRHGQKGVASQKWPAID 681

Query: 873  MPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGD 932
            MPFS  +G++PD+IINPHAFPSRMTI M +ES+A K G+LHG   D+TPF          
Sbjct: 682  MPFSE-SGIQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPFR--------- 731

Query: 933  TGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDK 992
               DE  + VD  G  L   G+NY+G E +YSG+ G EL  +I+IG VYYQRLRHMV+DK
Sbjct: 732  --FDEQNTAVDFFGHQLMKAGYNYYGNEPMYSGITGQELAADIYIGVVYYQRLRHMVNDK 789

Query: 993  FQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADV 1052
            FQVR+TG ++  T QPIKGRK+GGGIR GEMERD+L+AHG A+LL DRL  CSDY  A +
Sbjct: 790  FQVRTTGPVNSTTGQPIKGRKKGGGIRVGEMERDALIAHGTAFLLQDRLMNCSDYTRATL 849

Query: 1053 CSLCGSVLT-----ATFIHPQKRAIREIGGLPPARAPKKVTCHAC--------------Q 1093
            C  CGS L+     A F   ++R  R++           V C  C               
Sbjct: 850  CRQCGSFLSTAPTVAEFSRKKERGGRDV----------VVRCRRCARPADGVQSKADVWM 899

Query: 1094 TSKGME--------TVAMPYVFRYLAAELAAMNIKITLQL 1125
              +GM          VA+P V +YL  ELA+M +++  ++
Sbjct: 900  DGQGMRFVGGDDVGVVAVPGVLKYLDVELASMGVRLKFEV 939


>gi|71028664|ref|XP_763975.1| DNA-directed RNA polymerase II subunit [Theileria parva strain
            Muguga]
 gi|68350929|gb|EAN31692.1| DNA-directed RNA polymerase II subunit, putative [Theileria parva]
          Length = 1190

 Score =  353 bits (905), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 309/1148 (26%), Positives = 498/1148 (43%), Gaps = 165/1148 (14%)

Query: 39   RQAKISYTGKLMADVEFQ-YLDAGSPVVRE------RFNFGQFPVMLKTRRCHLQGADSQ 91
            R   ++Y  ++  D+E + +++    +V+       R    + P+M K+  C  +G + +
Sbjct: 150  RLRNLTYASQVYIDIEQETFVNENGKLVQTDSTVYPRVPLCRMPMMHKSSYCWTRGLNDR 209

Query: 92   KLVSLKEEAAEMGGYFILNGLERVFRS---------VILPKQNYPMSMVRS--SFRDRRE 140
             L  + E   + GGYF++NG ERV  +          +  K+N   S V    S  D  +
Sbjct: 210  DLSDIGECVFDQGGYFVVNGGERVLIAQERMANNFVYVFNKKNSKYSAVAQLRSQPDFIQ 269

Query: 141  GYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLE 200
            G T   ++I   +  ++ +   L Y+ +               +PV I+ +AL   +D +
Sbjct: 270  GVTSLTIMISNSQLTKNKMVAVLPYIRSD--------------IPVPILFRALGCISDRD 315

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ--PV 258
            I   +                              V D S T  L  ++   E  +  P 
Sbjct: 316  ILQRI------------------------------VYDFSDTQMLSLMRASLEECKRGPT 345

Query: 259  IDGLQSESYYAVAETVIRDY---IFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
            +  L  E      ET+ R +   +   +   + K   L +M+ +L          D+ + 
Sbjct: 346  VGALHEERLNFAKETLRRHFLPHVGTEVGSESKKCFYLGYMIHRLLLNQLGRINEDDREH 405

Query: 316  LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPS 375
               + + L G L+            +  ++ ++++I++ G+ FD      IK        
Sbjct: 406  FGKKRLDLAGSLMASSFGTLFRKLAKDVERFLKNQIDS-GRSFDV--AGAIKSC------ 456

Query: 376  KQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
             QI   ++  L TG        ++  R G +    RL F  ++S  R ++      G + 
Sbjct: 457  SQITQGLQYQLLTGNWGRDKDGNVV-RTGVSQVLNRLTFASYLSHLRRLNTPLGREG-KM 514

Query: 436  TSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV 495
               R+L    WG +CP  TP+G+  GL+ ++   C ++              + ++IL  
Sbjct: 515  AKPRQLHNTHWGMICPAETPEGQAVGLVKNLALMCYIS-----------VGSLSSTILDF 563

Query: 496  LIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVI--PSSEIEKVVAHLRRLKVSAASVIP 553
            L+  GM  SL ++        + + L+G  VGV   P S +  ++   R+  +S+ + I 
Sbjct: 564  LLEFGM-DSLDEISPILIKDRVKIFLNGTWVGVFNQPDSLVNVLLELRRKGNISSETSIV 622

Query: 554  DDLEVGYVPL--SLGGAYPGLYLFTS-----PPKFVRPVRNISLPSE---ESQNIELIG- 602
             D+    + +    G +   LY+  +       K    + N  L      E+  +E I  
Sbjct: 623  RDIMSNEIKIFTDAGRSMRPLYIVENNRLLITKKHADMIENRQLTWSGLLETGVVEYIDC 682

Query: 603  PFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQM 662
              E++ M    PD            TH EIHP+ +L V A++ P+ D NQSPRN YQ  M
Sbjct: 683  EEEEICMIAMFPDDLVNNNNYCNSYTHCEIHPSMILGVCASIIPFPDQNQSPRNTYQSAM 742

Query: 663  AKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGY 722
             KQ MG        R D   + L  PQ P+V T +       E P G N+IVA++ YTGY
Sbjct: 743  GKQAMGVYSTNYNLRMDTLSHVLYYPQKPLVCTRSMEFLRFRELPAGINSIVAIMCYTGY 802

Query: 723  DMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV--------DRGQKLFRRNKDAKS 774
            + ED++I+N+SS+DRG+      +T + +    G+ V          G  L  +  D   
Sbjct: 803  NQEDSLIMNQSSIDRGLFRSVFNRTYSSEEKYLGSTVIESFTKPTASGNFLNLKRGD--- 859

Query: 775  LHSVIDSDGLPYVGQ-------MIHPGEPYCSIYDKTTNSWRTNSR-------KGSESVF 820
             +S +D+DGL   G        +I    P  +  +    +   N R       + +E+  
Sbjct: 860  -YSKLDNDGLVEPGSRVLGDDIIIGRSSPVEADPNNPQYTSEMNLRMDCSCCLRPNENGV 918

Query: 821  VDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTG 880
            VD V + + N     +   ++ R  R P IGDKF+SRHGQKG     +   D+PF+   G
Sbjct: 919  VDNVLLTVNNKG--CKFTKVKVRSIRVPQIGDKFASRHGQKGTIGMTFRMEDLPFT-CDG 975

Query: 881  MRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKS 940
            + PD+I+NPHA PSRMTI  L+E +  K GSL G   DATPF               SK 
Sbjct: 976  IVPDIIMNPHAVPSRMTIGHLIECLLGKVGSLVGMEGDATPF---------------SKM 1020

Query: 941  LVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGT 1000
             +D++   L  C ++ +G E  ++G  G  +  +IF+GP YYQRL+HMV DK   R+ G 
Sbjct: 1021 TLDQISNRLFKCRYSRYGNEAFHNGFTGNLMASKIFVGPTYYQRLKHMVEDKIHARARGP 1080

Query: 1001 MDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVL 1060
            +  +TRQP +GR R GG+RFGEMERD +++HGAA +L +RL   SD +   VC+ CG + 
Sbjct: 1081 VTMLTRQPTEGRSREGGLRFGEMERDCMISHGAAKMLKERLFDQSDAYRVHVCNFCGLLS 1140

Query: 1061 TATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIK 1120
             A   +                      C AC     +  V +PY  + L  EL AM I 
Sbjct: 1141 VANLNN------------------SSFQCTACDNKTQISQVTIPYACKLLLQELMAMAIY 1182

Query: 1121 ITLQLGDG 1128
              L L + 
Sbjct: 1183 PKLILTEA 1190


>gi|258571555|ref|XP_002544581.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Uncinocarpus
            reesii 1704]
 gi|237904851|gb|EEP79252.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Uncinocarpus
            reesii 1704]
          Length = 1202

 Score =  352 bits (903), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 201/517 (38%), Positives = 273/517 (52%), Gaps = 59/517 (11%)

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH EI P  +L  VA L PY  HNQSPRN YQC M KQ +G        R D  LY +  
Sbjct: 720  THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYTMVY 779

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
            PQ P+V+T T      D  P G +A VAV++Y+GYD+EDA++LNK+SVDRG    Q+++ 
Sbjct: 780  PQKPMVKTRTIELVKYDRLPAGQSATVAVMSYSGYDIEDALVLNKASVDRGFGRCQVFRK 839

Query: 748  ETIDLSDDGNKV-DRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCS--IYDKT 804
             + +L    N   DR     R N      H+++DSDGL  VG+ +  GE Y +    +  
Sbjct: 840  YSANLKSYSNGTKDRLLGPDRENGAPIRKHALLDSDGLAAVGEKVSSGEVYINKVTPENA 899

Query: 805  TNSWRTNSRKGS--------------ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPII 850
             +S  T S  G               +  ++D V +     +N  Q   ++ R TR P +
Sbjct: 900  LSSGITGSDAGGPIAYIPSPQTYKLPDPSYIDKVMISTTEGEN--QLLKVQTRQTRRPEV 957

Query: 851  GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGG 910
            GDKFSSRHGQKGV   +    DMPF+   G+ PD+I+NPH FPSRMT+  +LE V  K G
Sbjct: 958  GDKFSSRHGQKGVVGIIAEQADMPFTD-QGIVPDIIMNPHGFPSRMTVGKMLELVVGKAG 1016

Query: 911  SLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTE 970
             L G+F   TPF  S                V+E+  +L + GF+Y G + L SG+ G  
Sbjct: 1017 VLSGQFGYGTPFGGSP---------------VEEMSAILVSKGFSYGGKDYLTSGITGEP 1061

Query: 971  LTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLA 1030
            L   +F GP+YYQ+L+HMV DK   R+ G    +TRQP +GR R GG+R GEMERD L+A
Sbjct: 1062 LPAYVFTGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIA 1121

Query: 1031 HGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCH 1090
            +G + LL +RL   SD H  DVC  CG +    +                        C 
Sbjct: 1122 YGTSQLLLERLMISSDRHEVDVCENCGFMGYLGW------------------------CQ 1157

Query: 1091 ACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
             C+TS+G+  +A+PY  + L  EL +MN+    +L D
Sbjct: 1158 RCKTSRGVVKMAIPYAAKLLVQELFSMNVVARFKLAD 1194



 Score = 97.1 bits (240), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 109/447 (24%), Positives = 182/447 (40%), Gaps = 56/447 (12%)

Query: 36  DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
           + CR   ++Y   ++ D  F+Y+     V R     G+ PVML++ +C L      ++  
Sbjct: 157 NECRLRDMTYAAPILVD--FEYVRGRQRVKRNGTAIGRMPVMLRSSKCVLSKKSPGEMYQ 214

Query: 96  LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
           L E   + GGYFI+NG E+    VIL ++    + V      ++E            RK 
Sbjct: 215 LHECPLDPGGYFIVNGTEK----VILVQEQLSKNRVIVETDPKKEIVQASVTSSSNERKS 270

Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
           +S + LK        + L   +   +  +P+ I+LKA+   +D E+   L    D  Y+ 
Sbjct: 271 KSYIILK-----KDRIYLRHNVLSDD--VPIVIILKAMGIQSDKEML-LLVAGVDSVYQ- 321

Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHF----QPVIDGLQSESYYAVA 271
                      E   I   E   L + T+ Q L+++G H     +P   G    +Y   A
Sbjct: 322 -----------EDFAINFEESIKLGIYTQQQALEYLGSHIKIMRKPNSFGGVRRNYIQEA 370

Query: 272 ETVIRDYIFVHLNDNNDKFN----LLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
              I   I  H+   N  F      +  M +++       S+ D+ D + N+ + L G L
Sbjct: 371 VEAIASVIISHVQVENMNFRPKALYVAHMARRVLMAKHDPSLVDDRDYVGNKRLELAGQL 430

Query: 328 ITIYLKEKLEDWLRKGKKLIQDEIENNGKK------FDFFNLANIKKVMEKNPSKQIGTS 381
           + +      ED  +K    I+  I+   KK      FD F++  I           I   
Sbjct: 431 LALL----FEDLFKKFCFDIKMNIDKVLKKPVRTEAFDAFSVVAIH-------GNHITQG 479

Query: 382 IETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRK 440
           +   + TG  + +      +RAG T    RL+++  +     +   + F   R  S  R 
Sbjct: 480 MNRAISTGNWSLKRF--RMERAGVTHVLSRLSYISALGMMTRI--SSQFEKTRKVSGPRA 535

Query: 441 LLPESWGFLCPVHTPDGEPCGLLNHMT 467
           L P  +G LCP  TP+GE CGL+ ++ 
Sbjct: 536 LQPSQFGMLCPADTPEGEACGLVKNLA 562


>gi|426344421|ref|XP_004038768.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Gorilla
            gorilla gorilla]
          Length = 1097

 Score =  352 bits (903), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 269/890 (30%), Positives = 409/890 (45%), Gaps = 110/890 (12%)

Query: 270  VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
            + E +I D+      ++ +   ++I+M+ +L          D+ D   N+ + L G L+ 
Sbjct: 271  ILEHIIYDF------EDPEMMEMVIYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLA 324

Query: 330  IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
               +   ++ L++ +   Q  I + GK F+   LA IK       ++ I   ++  L TG
Sbjct: 325  FLFRGMFKNLLKEVRIYAQKFI-DRGKDFNL-ELA-IK-------TRIISDGLKYSLATG 374

Query: 390  RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
                Q     Q RAG +    RL F   +S  R ++      G +    R+L    WG +
Sbjct: 375  NWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLAKPRQLHNTLWGMV 432

Query: 450  CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
            CP  TP+G   GL+ ++     ++                + IL  L    M  +L ++ 
Sbjct: 433  CPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEFLEEWSM-ENLEEIS 480

Query: 510  KSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAASVIPDDLEVGYVPL 563
             +       + ++G  VG+    + E+++  LR+L+      VS  S+I D  E      
Sbjct: 481  PAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIY 538

Query: 564  SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------IELIGPFEQ--VFM 609
            +  G      L     K +   R+I    E   N            +E I   E+  V +
Sbjct: 539  TDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVML 598

Query: 610  EIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGF 669
             +   D  +         TH EIHP+ +L V A++ P+ DHNQSPRN YQ  M KQ MG 
Sbjct: 599  AMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGV 658

Query: 670  SVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMI 729
             +     R D   + L  PQ P+V T +       E P G N+IVA+ +YTGY+ ED++I
Sbjct: 659  YITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVI 718

Query: 730  LNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA-----KSLHSVIDSDGL 784
            +N+S+VDRG      Y++     S  G   D+ +   +  ++       +++  +D DGL
Sbjct: 719  MNRSAVDRGFFRSVFYRSYKEQESKKG--FDQEEVFEKPTRETCQGMRHAIYDKLDDDGL 776

Query: 785  PYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGSESVFVDYVAVDMKN 830
               G  +   +       ++ +       TN R          + SE+  VD V V +  
Sbjct: 777  IAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQ 836

Query: 831  SKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPH 890
                 +   IR R  R P IGDKF+SRHGQKG C   +   DMPF+   G+ PD+IINPH
Sbjct: 837  EGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT-CEGITPDIIINPH 893

Query: 891  AFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLR 950
            A PSRMTI  L+E +  K  +  G+  DATPF ++V               V ++  +L 
Sbjct: 894  AIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVN--------------VQKISNLLS 939

Query: 951  TCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIK 1010
              G++  G EVLY+G  G ++T +IFIGP YYQRL+HMV DK   R+ G +  + RQP++
Sbjct: 940  DYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPME 999

Query: 1011 GRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTA-TFIHPQK 1069
            GR R GG+RFGEMERD  +AHGAA  L +RL   SD +   VC+LCG +  A T  H  +
Sbjct: 1000 GRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYE 1059

Query: 1070 RAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
                               C  C+    +  V MPY  + L  EL +M+I
Sbjct: 1060 -------------------CRGCRNKTQISLVRMPYACKLLFQELMSMSI 1090



 Score = 47.0 bits (110), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 3/86 (3%)

Query: 34  MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
           M +  R   ++Y+  L  D+    +  G   ++   ++   G+ P+ML++  C L G   
Sbjct: 96  MPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 155

Query: 91  QKLVSLKEEAAEMGGYFILNGLERVF 116
           + L  L E   + GGYFI+NG E+V 
Sbjct: 156 RDLCELNECPLDPGGYFIINGSEKVL 181


>gi|344323318|gb|AEN14442.1| DNA-dependent RNA polymerase II second largest subunit [Lentinula
            edodes]
          Length = 1228

 Score =  352 bits (902), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 316/1166 (27%), Positives = 496/1166 (42%), Gaps = 195/1166 (16%)

Query: 51   ADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILN 110
             D+ ++  +   P    +   G+ P+ML++  C L+G   Q L  L E   + GGYFI+N
Sbjct: 155  GDMAWETENDDGPENSTKVWIGKVPIMLRSTFCILRGLADQDLYDLNECPYDSGGYFIIN 214

Query: 111  GLERVFRS----------VILPKQNYPMSM---VRSSFRDRREGYTDKAVVIRCVRKDQS 157
            G E+V  +          V    Q  P++    +RS+    + G T     ++   + Q 
Sbjct: 215  GSEKVLIAQERMATNHVYVFAKAQPSPINFLAEIRSAVE--KGGKTISQFQVKMFHRGQE 272

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
                 +       +++          +P+ +V + L   +D +I  H+  CYD +   + 
Sbjct: 273  RAMGNVMKATIPYIKVD---------IPIWVVFRGLGVISDRDILEHI--CYDMQ-DAQM 320

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
              +  P + E   I   EV           L  IG   +    GL  E     A+ +++ 
Sbjct: 321  LEMLKPCIDEGFVIQDREV----------ALDFIGN--RGTTTGLSREKRIRYAQEILQK 368

Query: 278  YIFVHLN----DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLK 333
             +  H++      + K     +M+ +L          D+ D    + + L G L+    +
Sbjct: 369  EMLPHVSMAEGSESKKAFFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGPLLANLFR 428

Query: 334  EKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLAT 393
                   +   + +Q  +E + +    FNLA   K       + I   ++  L TG    
Sbjct: 429  MLFRKLTKDVYRYMQKCVETHKE----FNLALAVK------HQTITNGLKYSLATGNWGD 478

Query: 394  QTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVH 453
            Q    +  +AG +    R  +   +S  R  +      G +    R+L    WG +CP  
Sbjct: 479  QKK-SMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREG-KIAKPRQLHNTHWGMVCPAE 536

Query: 454  TPDGEPCGLLNHMT--STCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKS 511
            TP+G+ CGL+ ++   S   V SY                ++  L   G+  SL +   S
Sbjct: 537  TPEGQACGLVKNLALMSCISVGSY-------------SAPVIEFLEEWGL-ESLEENAHS 582

Query: 512  GPPAVLSVLLDGRVVGV--IPSSEIEKVVAHLRRLKVS-AASVIPDDLEVGYVPLSLGGA 568
              P +  V ++G  +GV   P++ ++ +    R+  +S   SV+ D  E           
Sbjct: 583  STPTMTKVFVNGVWMGVHREPANLVKTIRKLRRKDDISPEVSVVRDIRE----------- 631

Query: 569  YPGLYLFTSPPKFVRP---VRNISLPSEES--------QN----------------IELI 601
               L L+T   +  RP   V N  L  ++         QN                +EL+
Sbjct: 632  -RELRLYTDAGRVCRPLFIVENQQLVLQKKHIKWLLNGQNDEGSEFKWEHLVKNGIVELL 690

Query: 602  GPFEQVFMEIRC----------------PDGGDG-----GRRNAFPATHEEIH----PTG 636
               E+  + I                  P   DG      R  A  + H   H    P+ 
Sbjct: 691  DAEEEETVMISMTPEDLENSRLQQQGIDPHENDGEFDPAARLKAGISAHTWTHCEIHPSM 750

Query: 637  MLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTN 696
            +L + A++ P+ DHNQSPRN YQ  M KQ MG  +     R D     L  PQ P+  T 
Sbjct: 751  ILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTR 810

Query: 697  TYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDG 756
            +       E P G NAIVA+L Y+GY+ ED++I+N+SS+DRG+    IY    +DL    
Sbjct: 811  SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRS-IYYRSYMDLEKKS 869

Query: 757  --NKVDRGQKLFRRN--KDAKSLHSVIDSDGLPYVGQ-------MIHPGEPYCSIYDKTT 805
               +++  +K  R N  +     +  ++ DGL   G        +I    P     ++  
Sbjct: 870  GVQQLEEFEKPTRDNTLRMKHGTYDKLEDDGLIAPGTGVRGEDIIIGKTAPIPPDSEELG 929

Query: 806  NSWRTNSR-------KGSESVFVDYVAVDMKNSKNLPQK-ANIRFRHTRNPIIGDKFSSR 857
               RT++R       K +ES  VD V +   NS+   QK   IR R TR P IGDKF+SR
Sbjct: 930  QRTRTHTRRDVSTPLKSTESGIVDQVLI-TTNSEG--QKFVKIRVRSTRIPQIGDKFASR 986

Query: 858  HGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFM 917
            HGQKG     +   DMPF+   G+ PD++INPHA PSRMTI  L+E + +K  +L G   
Sbjct: 987  HGQKGTIGITYRQEDMPFTA-EGIVPDIVINPHAIPSRMTIGHLVECLLSKVATLIGNEG 1045

Query: 918  DATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFI 977
            DATPF +                 V+ +   L+  G+   G+EV++ G  G +L  ++++
Sbjct: 1046 DATPFTDLT---------------VESVSMFLKQKGYQSRGLEVMFHGHTGRKLQAQVYL 1090

Query: 978  GPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLL 1037
            GP YYQRL+HMV DK   R+ G +  +TRQP++GR R GG+RFGEMERD +++HG A  L
Sbjct: 1091 GPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGIAGFL 1150

Query: 1038 HDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKG 1097
             +RL   SD +   VC +CG    A                      +   C AC+    
Sbjct: 1151 KERLFEASDAYRVHVCEICGLTAIANL------------------KKQSFECRACKNKTA 1192

Query: 1098 METVAMPYVFRYLAAELAAMNIKITL 1123
            +  + +PY  + L  EL +MNI   L
Sbjct: 1193 VSQLYIPYAAKLLFQELQSMNIAARL 1218


>gi|302698289|ref|XP_003038823.1| DNA-dependent RNA polymerase II second largest subunit [Schizophyllum
            commune H4-8]
 gi|300112520|gb|EFJ03921.1| DNA-dependent RNA polymerase II second largest subunit [Schizophyllum
            commune H4-8]
          Length = 1204

 Score =  351 bits (900), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 309/1152 (26%), Positives = 493/1152 (42%), Gaps = 185/1152 (16%)

Query: 59   DAGSPVVR----------ERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFI 108
            +AG P+ R          ++ + G+ P+ML++  C L     Q++  L E   + GGYFI
Sbjct: 133  EAGEPIWRTVKEDEGNAVQKVHIGKVPIMLRSAFCILNKLSDQEIYDLNECPYDSGGYFI 192

Query: 109  LNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVT---LKLYY 165
            +NG E+V    ++ ++    + V    + +       A +   V K   +++   +K+++
Sbjct: 193  INGSEKV----LIAQERMATNHVYVFAKAQPSPINFLAEIRSAVEKGGKTISQFQVKMFH 248

Query: 166  LLNGSVRLGFWLQGKEYL---LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGS 222
                            Y+   +P+ +V +AL   +D +I +H+  CY+            
Sbjct: 249  RTKERSMGNVIKATIPYIKVDIPIWVVFRALNVISDRDILDHI--CYEST---------D 297

Query: 223  PLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVH 282
            P + E +K  + +     +  R   L  IG   +    GL  E     A+ +++  +  H
Sbjct: 298  PQMLELLKPCIDD--GFVIQEREVALDFIGN--RGTTTGLNRERRVRYAQEILQKELLPH 353

Query: 283  LN----DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLED 338
            ++      + K     +M+ +L          D+ D    + + L G L+    +     
Sbjct: 354  VSMAEGSESKKAYFFGYMVHRLLLAALERRELDDRDHFGKKRLDLAGPLLAGLFRMLFRK 413

Query: 339  WLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLD 398
              +   + +Q  +E+N K F+  NLA IK          I   ++  L TG    Q    
Sbjct: 414  MTKDVYRYLQKCVESN-KDFNL-NLA-IKH-------HTISQGLKYSLATGNWGDQKKAG 463

Query: 399  LQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGE 458
               +AG +    R  +   +S  R  +      G +    R+L    WG +CP  TP+G+
Sbjct: 464  -AAKAGVSQVLNRYTYASTLSHLRRCNTPLGREG-KIAKPRQLHNTHWGMVCPAETPEGQ 521

Query: 459  PCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLS 518
             CGL+ ++ S     S       + DF +              + SL +  +S       
Sbjct: 522  ACGLVKNL-SLMACISVGSISAPVIDFLQEWN-----------LESLEENARSSEATFTK 569

Query: 519  VLLDGRVVGVIPSSEIEKVVAHLRRLK-----VSAASVIPDDLEVGYVPLSLGGAYPGLY 573
            V ++G  +GV    +  K+V  +RRL+         SV+ D  E              L 
Sbjct: 570  VFVNGVWMGV--HRDPAKLVETIRRLRRKDDISQEVSVVRDIRE------------KELR 615

Query: 574  LFTSPPKFVRP---VRNISLPSEESQN-----------------IELI-GPFEQVFMEIR 612
            ++T   +  RP   V N SL  E+                    IEL+    E+  M   
Sbjct: 616  VYTDAGRVCRPLFIVENQSLLLEKHHVHALTQGAKWDSLVKQGIIELLDAEEEETVMIAM 675

Query: 613  CPDGGDGGR--------------------------RNAFPATHEEIHPTGMLSVVANLTP 646
             P+  +  R                           N    TH EIHP+ +L + A++ P
Sbjct: 676  TPEDLENSRMTPEERAAQQAEEEVDMTATKVAHTMANTHTWTHCEIHPSMILGICASIIP 735

Query: 647  YSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEY 706
            + DHNQSPRN YQ  M KQ MG  +     R D     L  PQ P+  T +       E 
Sbjct: 736  FPDHNQSPRNTYQSAMGKQAMGIFLTNFILRMDTMANILYYPQKPLATTRSMEYLKFREL 795

Query: 707  PTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLF 766
            P G NAIVA+L Y+GY+ ED++I+N+SS+DRG+     Y+  T D+      +   ++  
Sbjct: 796  PAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRGYT-DMEKKSVGMMPTEEFE 854

Query: 767  RRNKD-----AKSLHSVIDSDGLPYVGQMIH----------PGEPYCS-IYDKTTNSWR- 809
            + ++D         +  ++ DGL   G  ++          P  P    +  +T N  R 
Sbjct: 855  KPSRDNTLRMKHGTYDKLEDDGLIAPGTGVNGEDIIIGKTAPIPPDSEELGQRTKNHTRR 914

Query: 810  --TNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQL 867
              +   K +ES  +D V   +  +++  +   +R R TR P IGDKF+SRHGQKG     
Sbjct: 915  DVSTPLKSTESGIIDQVL--LTTNEDGKKLIRVRVRSTRIPQIGDKFASRHGQKGTIGIT 972

Query: 868  WPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVK 927
            +   DMPF+   G+ PD++INPHA PSRMTI  L+E + +K  +L G   DATPF +   
Sbjct: 973  YRQEDMPFTA-QGIVPDIVINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLT- 1030

Query: 928  KTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRH 987
                          V+ + + L   GF   G+EV+Y G  G +L  ++++GP YYQRL+H
Sbjct: 1031 --------------VEAVSKSLAAKGFQQRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKH 1076

Query: 988  MVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDY 1047
            MV DK   R+ G +  +TRQP++GR R GG+RFGEMERD +++HG A  L +RL   SD 
Sbjct: 1077 MVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGIAGFLKERLFDASDA 1136

Query: 1048 HVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVF 1107
            +   VC +CG    A                      +   C AC+       + +PY  
Sbjct: 1137 YRLHVCDICGLTAIANL------------------KKQSFECRACKNKTACSQLYIPYAA 1178

Query: 1108 RYLAAELAAMNI 1119
            + L  EL AMNI
Sbjct: 1179 KLLFQELQAMNI 1190


>gi|388582011|gb|EIM22317.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Wallemia sebi CBS 633.66]
          Length = 1198

 Score =  350 bits (898), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 323/1201 (26%), Positives = 505/1201 (42%), Gaps = 209/1201 (17%)

Query: 28   DEGLSEMFDH-CRQAKISYTGKLMADVEFQYL------DAGSPVVRERFN---------- 70
            D  +S MF H  R   ++Y+  +  D++ + L      + G  +    F+          
Sbjct: 83   DGSVSPMFPHEARLRNLTYSAPIYIDMKKRVLVQVEDDETGDLIWVPEFDEEHDETTKVW 142

Query: 71   FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSM 130
             G+ P+MLK+  C+L   DS +L  L E   + GGYFI+NG E+    V++ ++    + 
Sbjct: 143  IGKVPIMLKSTFCNLNNVDSARLSELNECPFDQGGYFIINGSEK----VLIAQERLAANH 198

Query: 131  VRSSFRDRREGYTDKAVVIRCVR---KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---L 184
            V    +      + +A +   +    K  SS+ +K++    G+ +         Y+   +
Sbjct: 199  VYIFAKAEPSPVSYQAEIRSAMEKGGKTVSSMQIKMFRRPQGNAQADTMRATIPYIKNEI 258

Query: 185  PVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTR 244
            P+ IV +AL    D EI  H+   +D+    +   +  P + E        VQD ++   
Sbjct: 259  PIIIVFRALGIVPDREILEHICFDFDDSQMLD---LLKPCIEEAFV-----VQDQNV--- 307

Query: 245  LQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDN----NDKFNLLIFMLQKL 300
               L  IG   +    GL  +     A+ +++  +  H+  N      K     +M+ +L
Sbjct: 308  --ALDFIGR--RGTTTGLSKDKRIRYAKDILQKEMLPHVATNEGSETKKAYFFGYMIHRL 363

Query: 301  FSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDF 360
                      D+ D    + + L G L+    +       +   + +Q  +E + +    
Sbjct: 364  MLARLERRELDDRDHFGKKRLDLGGPLLASLFRMLFRKLTKDVYRYMQKCVETHKE---- 419

Query: 361  FNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISF 420
            FNL    K      +  I   ++  L TG    Q    +Q RAG +    R  F   +S 
Sbjct: 420  FNLNQAVK------ANTITNGLKYSLATGNWGDQKKF-MQARAGVSQVLNRYTFASTLSH 472

Query: 421  FRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRG 480
             R  +      G +    R+L    WG +CP  TP+G+ CGL+ ++     V++   S  
Sbjct: 473  LRRCNTPIGRDG-KIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMANVST-GSSSA 530

Query: 481  NIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPA-VLSVLLDGRVVGVIPSSEIEKVVA 539
             I+DF          L   GM     +L +  P +  + V ++G  +GV    +   +V 
Sbjct: 531  PIQDF----------LQEWGM----EELEEFNPRSNQVKVFVNGVWIGV--HRDPTNLVK 574

Query: 540  HLRRLKVSA-----ASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEE 594
             LR+L+         SV+ D  E              + +FT   +  RP   + L  EE
Sbjct: 575  TLRKLRREGDIQHEVSVVRDVRE------------KEIKVFTDAGRVCRP---LFLVDEE 619

Query: 595  SQNIE-------------------------------------LIGPFEQVFMEIRCPDGG 617
            +Q +E                                     L    E+  M    P+  
Sbjct: 620  TQQLEINKSHIAKIEAHTNGEDEDPDQPYNWAKLMSDGVMELLDAEEEETVMICMTPEEL 679

Query: 618  DGGRRNAFPATHEEIHPTGMLSVVANL----------------------TPYSDHNQSPR 655
            +  R+   P   EE  P   +   + L                       P+ DHNQSPR
Sbjct: 680  EHSRQGFIPQD-EEFDPAARIKSASTLDTHTWTHCEIHPSMILGICASIIPFPDHNQSPR 738

Query: 656  NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
            N YQ  M KQ MG  +   + R D     L  PQ P+  T +       E P G NAIVA
Sbjct: 739  NTYQAAMGKQAMGVHLTNFQQRMDTLSNILYYPQKPLATTRSMEYLKFRELPAGQNAIVA 798

Query: 716  VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNK-VDRGQKLFRRN--KDA 772
            +L Y+GY+ ED++I+N+S++DRG+     Y++        G   ++  +K  R    +  
Sbjct: 799  ILCYSGYNQEDSVIMNQSAIDRGLFRSIFYRSYMDTEKKVGTMLLEEFEKPTRETCLRMK 858

Query: 773  KSLHSVIDSDGL-----PYVGQMIHPGEPYCSIYDKTTNSWRTNSR---------KGSES 818
               +  I++DGL        G  I  G+      D      RT            K +E+
Sbjct: 859  HGTYDKIENDGLIAPGTAVTGDDIIIGKTAPIPPDSEELGQRTKLHTKRDVSTPLKSTEN 918

Query: 819  VFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGV 878
              VD V V   N+  L + + +R R TR P IGDKF+SRHGQKG     + + DMPF+  
Sbjct: 919  GIVDQVLV-TTNADGL-KFSKVRMRSTRIPQIGDKFASRHGQKGTIGITYRNEDMPFTS- 975

Query: 879  TGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDES 938
             G+ PDLIINPHA PSRMTI  L+E + +K  +L G   DATPF               +
Sbjct: 976  DGITPDLIINPHAIPSRMTIGHLVECLLSKVATLQGSEGDATPF---------------T 1020

Query: 939  KSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRST 998
            +  V+ +  +L   G+   G+EV+Y+G  G +L  +++IGP YYQRL+HMV DK   R+ 
Sbjct: 1021 EVTVESISSILHEKGYQKRGLEVMYNGHTGRKLQAQVYIGPTYYQRLKHMVDDKIHARAR 1080

Query: 999  GTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGS 1058
            G +  +TRQP++GR R GG+RFGEMERD ++AHG A  L +RL   SD +   VC LCG 
Sbjct: 1081 GPVQILTRQPVEGRSRDGGLRFGEMERDCMIAHGVAAFLKERLFDASDAYRLHVCDLCGM 1140

Query: 1059 VLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMN 1118
               A                      +   C AC+    +  + +PY  + L  EL +M 
Sbjct: 1141 TAIANL------------------KKQTFECRACRNKTDISQIHVPYAAKLLFQELQSMG 1182

Query: 1119 I 1119
            I
Sbjct: 1183 I 1183


>gi|239613518|gb|EEQ90505.1| DNA-directed RNA polymerase III polypeptide [Ajellomyces dermatitidis
            ER-3]
 gi|327357033|gb|EGE85890.1| DNA-directed RNA polymerase [Ajellomyces dermatitidis ATCC 18188]
          Length = 1228

 Score =  350 bits (898), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 201/517 (38%), Positives = 278/517 (53%), Gaps = 59/517 (11%)

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH EI P  +L  VA L PY  HNQSPRN YQC M KQ +G        R D  LY +  
Sbjct: 746  THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYTMVY 805

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
            PQ P+V+T T      D+ P G +A VAV++Y+GYD+EDA++LNKSSVDRG    Q+++ 
Sbjct: 806  PQKPMVKTRTIELIKYDKLPAGQSATVAVMSYSGYDIEDALVLNKSSVDRGFGRCQVFRK 865

Query: 748  ETIDLSDDGNKV-DRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCS--IYDKT 804
             + +L    N   D+ +   R N      H+++DSDGL  VG+ ++ GE Y +    +  
Sbjct: 866  YSTNLKSYSNGTKDKLKGPDRENGLPIRKHALLDSDGLAAVGEKVNQGEVYINKVTPENA 925

Query: 805  TNSWRTNSRKGS--------------ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPII 850
             +S  T S  G               +  ++D V +    ++N  Q   ++ R TR P +
Sbjct: 926  LSSGITGSDAGRPIAYIPSPQTYKLPDPSYIDKVMISATEAEN--QLIKVQTRQTRVPEV 983

Query: 851  GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGG 910
            GDKFSSRHGQKGV   +    DMPFS + G+ PD+I+NPH FPSRMT+  +LE +A K G
Sbjct: 984  GDKFSSRHGQKGVVGIIAEYADMPFSDL-GIVPDIIMNPHGFPSRMTVGKMLELIAGKAG 1042

Query: 911  SLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTE 970
             L G+F   T F  S                V+E+  +L   GF+Y G + L SG+ G  
Sbjct: 1043 ILSGQFGYGTAFGGSP---------------VEEMSAILVDHGFSYGGKDYLTSGITGEP 1087

Query: 971  LTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLA 1030
            L   +F+GP+YYQ+L+HMV DK   R+ G    +TRQP +GR R GG+R GEMERD L+A
Sbjct: 1088 LPAYVFMGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIA 1147

Query: 1031 HGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCH 1090
            +G + LL +RL   SD H  DVC  CG +    +                        C 
Sbjct: 1148 YGTSQLLLERLMISSDRHEVDVCESCGFMGYLGW------------------------CQ 1183

Query: 1091 ACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
             C+TS+G+  + +PY  + L  EL +MN+   L+L D
Sbjct: 1184 RCKTSRGVVKMVIPYAAKLLVQELFSMNVVARLKLAD 1220



 Score = 94.0 bits (232), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 110/480 (22%), Positives = 194/480 (40%), Gaps = 70/480 (14%)

Query: 17  RHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPV 76
           R   E  D   D   +   + CR   ++Y   ++ D  F+Y+     V R     G+ PV
Sbjct: 164 RRADEEQDSKFDVASTITPNECRLRDMTYAAPILVD--FEYVRGRQRVKRNGTAIGRMPV 221

Query: 77  MLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVF-------RSVILPKQNYPMS 129
           ML++ +C L      ++  L E   + GGYFI+NG E+V        ++ ++ + +    
Sbjct: 222 MLRSSKCVLSNKSEAEMQLLHECPLDPGGYFIVNGTEKVILVQEQLSKNRVIVETDLKKE 281

Query: 130 MVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIV 189
           +V++S          K+ +I  ++KD+  +    + +LN  V             P+ I+
Sbjct: 282 IVQASVTSSSNERKSKSYII--MKKDRIYMR---HNVLNEDV-------------PIVIL 323

Query: 190 LKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQ 249
           LKA+   +D E+   L    D  Y+            E   I   E   L + T+ Q L+
Sbjct: 324 LKAMGIQSDKEML-LLVAGIDSTYQ------------EDFSINFEEAVKLGIYTQHQALE 370

Query: 250 HIGEHF----QPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFN----LLIFMLQKLF 301
           +IG       +P   G+   ++   A   I   I  H+   N  F      +  M +++ 
Sbjct: 371 YIGSRIKINRKPNSFGITRRNHVQEAIEAISSVIISHVVVENLNFRPKALYVAHMARRVL 430

Query: 302 SLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKK---- 357
                 S+ D+ D + N+ + L G L+ +      ED  +K +  I+  I+   KK    
Sbjct: 431 MAKHDPSLVDDRDYVGNKRLELAGQLLALL----FEDLFKKFQFDIKMNIDKVLKKPVRT 486

Query: 358 --FDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFL 415
             FD + +  I           I   +   + TG  + +      +RAG T    RL+++
Sbjct: 487 EQFDAYGVVAIH-------GNHITQGMNRAISTGNWSLKRF--RMERAGVTHVLSRLSYI 537

Query: 416 RFISFFRAVHRGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVAS 474
             +     +   + F   R  S  R L P  +G LCP  TP+GE CGL+ ++     + +
Sbjct: 538 AALGMMTRI--SSQFEKTRKVSGPRALQPSQFGMLCPSDTPEGEACGLVKNLALMTHITT 595


>gi|261194511|ref|XP_002623660.1| DNA-directed RNA polymerase III polypeptide [Ajellomyces dermatitidis
            SLH14081]
 gi|239588198|gb|EEQ70841.1| DNA-directed RNA polymerase III polypeptide [Ajellomyces dermatitidis
            SLH14081]
          Length = 1204

 Score =  350 bits (898), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 201/517 (38%), Positives = 278/517 (53%), Gaps = 59/517 (11%)

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH EI P  +L  VA L PY  HNQSPRN YQC M KQ +G        R D  LY +  
Sbjct: 722  THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYTMVY 781

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
            PQ P+V+T T      D+ P G +A VAV++Y+GYD+EDA++LNKSSVDRG    Q+++ 
Sbjct: 782  PQKPMVKTRTIELIKYDKLPAGQSATVAVMSYSGYDIEDALVLNKSSVDRGFGRCQVFRK 841

Query: 748  ETIDLSDDGNKV-DRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIY--DKT 804
             + +L    N   D+ +   R N      H+++DSDGL  VG+ ++ GE Y +    +  
Sbjct: 842  YSTNLKSYSNGTKDKLKGPDRENGLPIRKHALLDSDGLAAVGEKVNQGEVYINKVTPENA 901

Query: 805  TNSWRTNSRKGS--------------ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPII 850
             +S  T S  G               +  ++D V +    ++N  Q   ++ R TR P +
Sbjct: 902  LSSGITGSDAGRPIAYIPSPQTYKLPDPSYIDKVMISATEAEN--QLIKVQTRQTRVPEV 959

Query: 851  GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGG 910
            GDKFSSRHGQKGV   +    DMPFS + G+ PD+I+NPH FPSRMT+  +LE +A K G
Sbjct: 960  GDKFSSRHGQKGVVGIIAEYADMPFSDL-GIVPDIIMNPHGFPSRMTVGKMLELIAGKAG 1018

Query: 911  SLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTE 970
             L G+F   T F  S                V+E+  +L   GF+Y G + L SG+ G  
Sbjct: 1019 ILSGQFGYGTAFGGSP---------------VEEMSAILVDHGFSYGGKDYLTSGITGEP 1063

Query: 971  LTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLA 1030
            L   +F+GP+YYQ+L+HMV DK   R+ G    +TRQP +GR R GG+R GEMERD L+A
Sbjct: 1064 LPAYVFMGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIA 1123

Query: 1031 HGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCH 1090
            +G + LL +RL   SD H  DVC  CG +    +                        C 
Sbjct: 1124 YGTSQLLLERLMISSDRHEVDVCESCGFMGYLGW------------------------CQ 1159

Query: 1091 ACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
             C+TS+G+  + +PY  + L  EL +MN+   L+L D
Sbjct: 1160 RCKTSRGVVKMVIPYAAKLLVQELFSMNVVARLKLAD 1196



 Score = 94.0 bits (232), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 110/480 (22%), Positives = 194/480 (40%), Gaps = 70/480 (14%)

Query: 17  RHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPV 76
           R   E  D   D   +   + CR   ++Y   ++ D  F+Y+     V R     G+ PV
Sbjct: 140 RRADEEQDSKFDVASTITPNECRLRDMTYAAPILVD--FEYVRGRQRVKRNGTAIGRMPV 197

Query: 77  MLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVF-------RSVILPKQNYPMS 129
           ML++ +C L      ++  L E   + GGYFI+NG E+V        ++ ++ + +    
Sbjct: 198 MLRSSKCVLSNKSEAEMQLLHECPLDPGGYFIVNGTEKVILVQEQLSKNRVIVETDLKKE 257

Query: 130 MVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIV 189
           +V++S          K+ +I  ++KD+  +    + +LN  V             P+ I+
Sbjct: 258 IVQASVTSSSNERKSKSYII--MKKDRIYMR---HNVLNEDV-------------PIVIL 299

Query: 190 LKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQ 249
           LKA+   +D E+   L    D  Y+            E   I   E   L + T+ Q L+
Sbjct: 300 LKAMGIQSDKEML-LLVAGIDSTYQ------------EDFSINFEEAVKLGIYTQHQALE 346

Query: 250 HIGEHF----QPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFN----LLIFMLQKLF 301
           +IG       +P   G+   ++   A   I   I  H+   N  F      +  M +++ 
Sbjct: 347 YIGSRIKINRKPNSFGITRRNHVQEAIEAISSVIISHVVVENLNFRPKALYVAHMARRVL 406

Query: 302 SLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKK---- 357
                 S+ D+ D + N+ + L G L+ +      ED  +K +  I+  I+   KK    
Sbjct: 407 MAKHDPSLVDDRDYVGNKRLELAGQLLALL----FEDLFKKFQFDIKMNIDKVLKKPVRT 462

Query: 358 --FDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFL 415
             FD + +  I           I   +   + TG  + +      +RAG T    RL+++
Sbjct: 463 EQFDAYGVVAIH-------GNHITQGMNRAISTGNWSLKRF--RMERAGVTHVLSRLSYI 513

Query: 416 RFISFFRAVHRGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVAS 474
             +     +   + F   R  S  R L P  +G LCP  TP+GE CGL+ ++     + +
Sbjct: 514 AALGMMTRI--SSQFEKTRKVSGPRALQPSQFGMLCPSDTPEGEACGLVKNLALMTHITT 571


>gi|409083783|gb|EKM84140.1| hypothetical protein AGABI1DRAFT_117576 [Agaricus bisporus var.
            burnettii JB137-S8]
          Length = 1220

 Score =  350 bits (897), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 312/1129 (27%), Positives = 495/1129 (43%), Gaps = 162/1129 (14%)

Query: 71   FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSM 130
             G+ P+ML++  C L+G   Q L  L E   + GGYFI+NG E+    V++ ++    + 
Sbjct: 168  IGKVPIMLRSTFCILRGLQDQDLYDLNECPYDSGGYFIINGSEK----VLIAQERMATNH 223

Query: 131  VRSSFRDRREGYTDKAVVIRCVRKDQSSVT---LKLYYLLNGSVRLGFWLQGK-EYL--- 183
            V    + +       A +   V K   +++   +K+++  N    LG  ++    Y+   
Sbjct: 224  VYVFAKAQPSPINFLAEIRSAVEKGGKTISQFQVKMFH-RNQERSLGNVMKATIPYIKVD 282

Query: 184  LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTT 243
            +P+ +V + L   +D +I  H+  CYD +   +   +  P + +   I   EV       
Sbjct: 283  IPIWVVFRGLGVISDRDILEHI--CYDMQ-DAQMLEMLKPCIDDGFVIQDREV------- 332

Query: 244  RLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLN----DNNDKFNLLIFMLQK 299
                L  IG   +    GL  E     A+ +++  +  H++      + K     +M+ +
Sbjct: 333  ---ALDFIGN--RGTTTGLSRERRIRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHR 387

Query: 300  LFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFD 359
            L          D+ D    + + L G L+    +       +   + +Q  +E + +   
Sbjct: 388  LLLAALERRELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKE--- 444

Query: 360  FFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFIS 419
             FNLA   K       + I   ++  L TG    Q    +  +AG +    R  +   +S
Sbjct: 445  -FNLALAVK------HQTITNGLKYSLATGNWGDQKK-SMSSKAGVSQVLNRYTYASTLS 496

Query: 420  FFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMT--STCRVASYYD 477
              R  +      G +    R+L    WG +CP  TP+G+ CGL+ ++   S   V SY  
Sbjct: 497  HLRRCNTPLGREG-KIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSY-- 553

Query: 478  SRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV--IPSSEIE 535
                          ++  L   G+  SL +   S  P    V ++G  +GV   P++ ++
Sbjct: 554  -----------SAPVIEFLEEWGL-ESLEENAHSTSPCT-KVFVNGVWMGVHRDPANLVK 600

Query: 536  KVVAHLRRLKVS-AASVIPDDLEVGY-VPLSLGGAYPGLYLFTSPPKFV--RPVRNISLP 591
             +    R+  +S   SV+ D  E    +    G     L++  +    +  R +R ++  
Sbjct: 601  TIKKLRRKDDISPEVSVVRDIREKELRIYTDAGRVCRPLFIVENQQLLLGKRHIRWLNSG 660

Query: 592  SEESQN------------IELIGPFEQVFMEIRC----------------PDGGDG---- 619
            S++  N            IEL+   E+  + I                  P   DG    
Sbjct: 661  SDDEGNEYKWEQLIKGGVIELLDAEEEETVMISMTPEDLENSRLQAAGVDPHANDGDFDP 720

Query: 620  -GRRNAFPATHEEIH----PTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQAL 674
              R  A    H   H    P+ +L + A++ P+ DHNQSPRN YQ  MAKQ MG  +   
Sbjct: 721  AARLKAGTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMAKQAMGIYLTNF 780

Query: 675  KFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSS 734
              R D     L  PQ P+  T +       E P G NAIVA+L Y+GY+ ED++I+N+SS
Sbjct: 781  LIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSS 840

Query: 735  VDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAK-----SLHSVIDSDGLPYVGQ 789
            +DRG+    IY    +DL +  + + + ++  +  +D         +  ++ DGL   G 
Sbjct: 841  IDRGLFRS-IYYRSYMDL-EKKSGIQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGT 898

Query: 790  -------MIHPGEPYCSIYDKTTNSWRTNSR-------KGSESVFVDYVAVDMKNSKNLP 835
                   +I    P     ++     RT++R       K +E   VD V +   NS+   
Sbjct: 899  GVRGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTEIGIVDQVLI-TTNSEG-- 955

Query: 836  QK-ANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPS 894
            QK   +R R TR P IGDKF+SRHGQKG     +   DMPF+   G+ PDLIINPHA PS
Sbjct: 956  QKFVKVRVRATRIPQIGDKFASRHGQKGTVGITYRQEDMPFTA-EGIVPDLIINPHAIPS 1014

Query: 895  RMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGF 954
            RMTI  L+E + +K  +L G   DATPF +                 V+ +   LR  G+
Sbjct: 1015 RMTIGHLVECLLSKVATLIGNEGDATPFTDLT---------------VESVSTFLRQKGY 1059

Query: 955  NYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKR 1014
               G+EV+Y G  G +L  +I++GP YYQRL+HMV DK   R+ G +  +TRQP++GR R
Sbjct: 1060 QSRGLEVMYHGHTGRKLQAQIYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSR 1119

Query: 1015 GGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIRE 1074
             GG+RFGEMERD +++HG A  L +RL   SD +   VC +CG    A            
Sbjct: 1120 DGGLRFGEMERDCMISHGIAGFLKERLFEASDAYRLHVCDICGLTAIANL---------- 1169

Query: 1075 IGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITL 1123
                      +   C +C+       + +PY  + L  EL +MNI   L
Sbjct: 1170 --------KKQTFECRSCKNKTACSQIYIPYAAKLLFQELQSMNIAARL 1210


>gi|342180758|emb|CCC90234.1| unnamed protein product [Trypanosoma congolense IL3000]
 gi|343476499|emb|CCD12414.1| unnamed protein product [Trypanosoma congolense IL3000]
          Length = 1186

 Score =  349 bits (896), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 318/1124 (28%), Positives = 490/1124 (43%), Gaps = 164/1124 (14%)

Query: 67   ERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNY 126
            +    G+ P+MLK+ RC+L   D ++L  L E   + GGYFI+NG E+V    ++ ++  
Sbjct: 163  QNMELGRIPIMLKSMRCNLLNKDEEELPRLNECPHDQGGYFIVNGTEKV----LIAQERQ 218

Query: 127  PMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLL---NGSVRLGFWLQGKEYL 183
              + V +  R +      K++V   + K ++   L  Y      +G   L   +   + L
Sbjct: 219  AANHVYAFTRPKGLLCEIKSIVEGSLNKPRTLQILMPYKKSGPGHGYENLLCRVAQMDEL 278

Query: 184  LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTT 243
            +P+ I+ +AL   +D EI    T   D K            + E ++  + +   L + T
Sbjct: 279  IPLFILFRALDMGSDKEILQ--TVVPDLK---------DAAMLEMLRGSMEDASTLQVFT 327

Query: 244  RLQCLQHIGEHF--QPVIDGLQSESYYAVAETVIRD---YIFVHLNDNNDKFNLLIFMLQ 298
            R + L  IG+    Q   D LQ E+     + ++RD   ++ V    +  K   + +M+ 
Sbjct: 328  RDEALWFIGKRLGKQDSRDNLQREA----QDLLMRDLLPHMGVDCAADRSKCLFIGYMVH 383

Query: 299  KLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKF 358
            +L  L        + D L ++ I + G L+T  L + L    R+  + + D   N     
Sbjct: 384  RLLLLALGRREDTDRDFLGHKRIDVAGSLLTFQLNQFLVQVRREMTRTVHDFSTNRSGVV 443

Query: 359  DFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFI 418
             F  + +         S+ I   +   L TG        ++  + G +    RL +   +
Sbjct: 444  SFGRILH---------SRLITDGMRRCLATGNFGDLKSGNI--KTGVSQTLNRLTYSSSL 492

Query: 419  SFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDS 478
            S  R +    S A  + T  R L    WG++CPV TP+G   GLL ++   C V+   D 
Sbjct: 493  SNLRRIQNPIS-ASSKATRPRNLHCTQWGYICPVETPEGGSIGLLKNLALMCLVSRGSDH 551

Query: 479  RGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV---------- 528
             G ++      T    +            L       V  V ++G ++GV          
Sbjct: 552  TGVVQVVQSRTTGFHSI-----------TLADLADVRVARVFVNGTLIGVHADPERLLRE 600

Query: 529  ----IPSSEIEKVVAHLRRLKVSAASVIPDD---------LEVGYVPLSLG--------G 567
                    E+   V+ +R ++     V  D          +E   V L  G         
Sbjct: 601  LRARRRGGELSNEVSVVRDIRDREIRVFSDGGRCLRPLFVVEKSRVKLQKGKIGELLEPS 660

Query: 568  AYPGLYLFTSPPKFVRP--VRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAF 625
            A PG     S  + ++   V  +    E+S  I + GP E                +N F
Sbjct: 661  AAPGGRREISWSRVMKKGYVELVDCEEEDSLLIAM-GPSEV--------------GKNYF 705

Query: 626  PATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHL 685
              +H E+ P+ +L + A++ PY +HNQSPRN YQ  M KQ MG        R D   + L
Sbjct: 706  -YSHCEMDPSMILGICASIIPYPNHNQSPRNTYQSAMGKQAMGVYASNFNMRMDTTAHVL 764

Query: 686  QTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIY 745
              PQ P+VRT   +    ++ P G NAIVA+  Y+GY+ ED++I+++S+V+RG      +
Sbjct: 765  FYPQKPLVRTKAMSYMRSNDLPAGHNAIVAIACYSGYNQEDSIIMSRSAVERGFFRSVFW 824

Query: 746  QTETIDLSDDGNKVDRGQKLFRRNKDAKSLH------SVIDSDGL-----PYVGQMIHPG 794
            ++          K   GQ++F    D K  H      + +D+DGL     P +G  I  G
Sbjct: 825  RS----YKASEEKKREGQEMFE-IPDRKVCHVKRADYTKLDTDGLIKPGMPVIGGDIIVG 879

Query: 795  E----PYCSIYDKTTNSWRTNSR------KGSESVFVDYVAVDMKNSKNLPQKANIRFRH 844
            +    P     D T  + R   R      + +E   VD V +  +N  N   K  +R R 
Sbjct: 880  KTIPIPESMREDTTLTNTRILKRDCSISSRTAEKGVVDRVML-TENKGNRFTK--VRIRT 936

Query: 845  TRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLES 904
             + P IGDKF SRHGQKG     +   D+PF+   G+ PDLIINPHA PSRMT+A L+E+
Sbjct: 937  IKIPNIGDKFCSRHGQKGTNGIQFRQEDLPFNN-DGISPDLIINPHAIPSRMTVAHLIET 995

Query: 905  VAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYS 964
            +A K     G  + ATPF + V               V++ G+ L     N +G E LY+
Sbjct: 996  LAGKVACFKGGEVYATPFCSVV---------------VEDFGKALTQLNLNRYGNERLYN 1040

Query: 965  GVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEME 1024
            G  G  L   IF GP YYQRL+H+ SDK   R  G +  + RQP +GR   GG+RFGEME
Sbjct: 1041 GHTGLPLDHLIFFGPTYYQRLKHLSSDKIHARPRGPLQPLVRQPTEGRAHEGGLRFGEME 1100

Query: 1025 RDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP 1084
            RD +L++GA+  L +RL   SDY+   VC++CG++  A                      
Sbjct: 1101 RDCMLSYGASQWLRERLFRVSDYYSVHVCNVCGTICAADTDQ------------------ 1142

Query: 1085 KKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGDG 1128
                C  C     +  V MPY  + L  EL  M++ I  +LG G
Sbjct: 1143 NVYKCQGCDNDSHIAQVLMPYACKLLFQEL--MSMAILPRLGTG 1184


>gi|353243888|emb|CCA75371.1| probable DNA-dependent RNA polymerase II RPB140 (RPB2)
            [Piriformospora indica DSM 11827]
          Length = 1223

 Score =  349 bits (895), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 315/1150 (27%), Positives = 492/1150 (42%), Gaps = 196/1150 (17%)

Query: 68   RFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRS--------- 118
            R    + P+ML++  C L      +   L E   + GGYFI++G E+V  +         
Sbjct: 165  RLPLAKIPIMLRSDICALYTIPDPEKYDLNECPDDPGGYFIISGQEKVLIAQERMAGNHV 224

Query: 119  -VILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVR----KDQSSVTLKLYY-----LLN 168
             V    Q  P+S +                 IR V     K  SS  +KL++        
Sbjct: 225  YVFAKGQPSPISFLAE---------------IRSVPERGGKLLSSFQVKLFHKGIEKQSG 269

Query: 169  GSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSER 228
            G++R        +  +P+ I+ +A+    D +I  H+  CYD  +  +   +  P + E 
Sbjct: 270  GAIRASVPYIKTD--VPIWILFRAMGVLADRDILEHI--CYD-GHDDQMLEMLKPCIDEG 324

Query: 229  VKIILAEVQDLSLTTRLQCLQHIGEHFQ-PVIDGLQSESYYAVAETVIRDYIFVHLN--D 285
              +   E+           L  IG     P I     E     A+ +I+  +  H++  +
Sbjct: 325  FVVQHREI----------ALDFIGRRGNTPTI---SRERRIRYAQEIIQKELLPHISMEE 371

Query: 286  NND--KFNLLIFMLQKLF-SLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRK 342
             N+  K   + +M+ +L  + +D   + D  D    + + L G L++   +      ++ 
Sbjct: 372  GNEARKAYFVGYMIHRLLLAALDRREIDDR-DHFGKKRLDLAGPLLSTLFRMLFRKVVKD 430

Query: 343  GKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQR 402
              + +Q  +E+ GK FD      +           I   ++  L TG    Q    +  +
Sbjct: 431  VYRYLQKCVES-GKAFDVGRAIKLGT---------ISNGLKYSLATGNWGDQQNA-MSSK 479

Query: 403  AGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGL 462
            AG +    R  +   +S  R  +      G +    R+L    WG +CP  TP+G+ CGL
Sbjct: 480  AGVSQVLNRYTYASTLSHLRRTNTPLGREG-KIAKPRQLHNTHWGMVCPAETPEGQACGL 538

Query: 463  LNHMT--STCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVL 520
            + +++  +   V SY    G   D   M               +L +  +S  P+   V 
Sbjct: 539  VKNLSLMACISVGSYSAPVGEFLDEWGME--------------ALEENAQSDRPST-KVF 583

Query: 521  LDGRVVGV-IPSSEIEKVVAHLRRLKV--SAASVIPDDLEVGY-VPLSLGGAYPGLYLFT 576
            L+G  +GV    +++   + HLRR +      SV+ D  E    +    G     L++  
Sbjct: 584  LNGVWMGVHREPTQLLNTLKHLRRTEAIHPEVSVVRDIREKELRIYTDSGRVCRPLFVVE 643

Query: 577  SPPKFVRPVRNISLPSEESQN-------------IELIGPFEQVFMEIRCPDGGDGGRRN 623
                 + P +   L  E+                +EL+   E+  + I C    D   R+
Sbjct: 644  KDKLLITPEQVARLRDEKDDPAGYRWDNLFKDGVVELLDAEEEETVMI-CMSPEDLDARS 702

Query: 624  AFPATHE----------------------EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQ 661
            +    H                       EIHP+ +L V A++ P+ DHNQSPRN YQ  
Sbjct: 703  SGQVYHTEDMYDPSSRVKTIIKAGSYSHCEIHPSMILGVCASIVPFPDHNQSPRNTYQSA 762

Query: 662  MAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTG 721
            M KQ MG S+     R D     L  PQ P+  T         + P G NAIVA+L Y+G
Sbjct: 763  MGKQAMGISLSNFLVRMDTMANILYYPQKPLATTRALEWLKFRDLPAGQNAIVAILCYSG 822

Query: 722  YDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV----------DRGQKLFRRNKD 771
            Y+ ED++I+N+SS+DRG+    IY    +D+     ++          D   ++   N D
Sbjct: 823  YNQEDSVIMNQSSIDRGLFRS-IYYRSYMDMEKTAGQITLEEFEKPSRDTTLRMKHGNYD 881

Query: 772  AKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR---------KGSESVFVD 822
                  +I + G+  +G+ I  G+      D      RT+           K +ES  +D
Sbjct: 882  KLDDDGLI-APGMNVIGEDIIIGKTAPLPPDSQELGQRTDRHTRRDVSTPLKSTESGIID 940

Query: 823  YV--AVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTG 880
            +V   VD + SK +     IR R TR P +GDKF+SRHGQKG    L+   DMPFS   G
Sbjct: 941  HVLITVDGEGSKFV----KIRVRSTRIPQVGDKFASRHGQKGTIGILYRQEDMPFSA-DG 995

Query: 881  MRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKS 940
            + PDLIINPHA PSRMTI  L+E + +K  +L+G+  DATPF +                
Sbjct: 996  IVPDLIINPHAIPSRMTIGHLVECLLSKVATLNGQEGDATPFTDLT-------------- 1041

Query: 941  LVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGT 1000
             V+++   LR  G+   G+EV+Y G  G +L  ++++GP YYQRL+HMV DK   R+ G 
Sbjct: 1042 -VEQVSHALRAAGYQSRGLEVMYHGHTGKKLQAQVYLGPTYYQRLKHMVEDKIHSRARGP 1100

Query: 1001 MDQITRQPIKGRKRGGGIRFGEME-------RDSLLAHGAAYLLHDRLHTCSDYHVADVC 1053
            +  +TRQP++GR R GG+RFGEME       RD +++HG A  L +RL   SD +   VC
Sbjct: 1101 VQILTRQPVEGRSRDGGLRFGEMEASQNSLIRDCMISHGIAAFLKERLFDASDAYRLHVC 1160

Query: 1054 SLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAE 1113
             +CG    A                      +   C +C+    +  + +PY  + L  E
Sbjct: 1161 DICGLTAIANL------------------KKQSFECRSCKNKTAVSQLYIPYAAKLLIQE 1202

Query: 1114 LAAMNIKITL 1123
            L AMNI   L
Sbjct: 1203 LQAMNIAARL 1212


>gi|452845424|gb|EME47357.1| hypothetical protein DOTSEDRAFT_125117 [Dothistroma septosporum
            NZE10]
          Length = 1147

 Score =  349 bits (895), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 206/513 (40%), Positives = 274/513 (53%), Gaps = 60/513 (11%)

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH EI P  +L  VA L PY  HNQSPRN YQC M KQ +G        R D  LY +  
Sbjct: 676  THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFTRIDTLLYLMVY 735

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
            PQ P+V+T T      D+ P G NA+VAV++Y+GYD+EDA++LNK+S DRG    Q+++ 
Sbjct: 736  PQAPMVKTRTIELVKYDKLPAGQNAVVAVMSYSGYDIEDALVLNKASCDRGFGRCQVFKK 795

Query: 748  ETIDLSDDGN-KVDR-GQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPY----CSIY 801
             ++ L   GN   DR G K      +  + H  I +DG+  VG  +   + Y    C + 
Sbjct: 796  VSMPLKAYGNGHTDRMGTK-----DNNNTRHRKIGTDGIVEVGVELENSDMYMLKECPVN 850

Query: 802  DKTTNSWRTN-------SRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKF 854
              T+ S R         S K  +  + D V V    + +   K  I+ R TR P IGDKF
Sbjct: 851  QATSVSQRDQKWSPMHMSYKLPDPCYADKVMVTANEANSTIIK--IQTRQTRRPEIGDKF 908

Query: 855  SSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHG 914
            SSRHGQKGV   L    DMPFS   G+ PD+I+NPH FPSRMT+  +LE V+ K G L G
Sbjct: 909  SSRHGQKGVVGLLAEQADMPFSD-QGVVPDIIMNPHGFPSRMTVGKMLELVSGKAGVLAG 967

Query: 915  KFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCE 974
            K    T F  S                V+++G  L   GF+Y G + L SG+ G  L   
Sbjct: 968  KHEYGTAFGGSK---------------VEDMGRTLVKHGFSYSGKDCLTSGITGESLPMY 1012

Query: 975  IFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAA 1034
            +F GP+YYQ+L+HMV DK   RSTG    +TRQP +GR R GG+R GEMERD L+A+GA+
Sbjct: 1013 VFFGPIYYQKLKHMVQDKMHSRSTGPRAILTRQPTEGRSRQGGLRLGEMERDCLIAYGAS 1072

Query: 1035 YLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQT 1094
             LL +RL   SD H  DVC +CG +    +                        C +C +
Sbjct: 1073 QLLLERLMISSDAHEVDVCQVCGMMGYNGW------------------------CQSCSS 1108

Query: 1095 SKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
            ++ +  + MPY  + L  EL +MN+K +LQL D
Sbjct: 1109 TRSVVRMTMPYAAKLLIQELMSMNVKASLQLAD 1141



 Score = 84.7 bits (208), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 102/464 (21%), Positives = 191/464 (41%), Gaps = 59/464 (12%)

Query: 36  DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
           + CR   ++Y+  +  D  + Y      V +     G+ P+ML++ RC L G     +  
Sbjct: 113 NECRLRDMTYSAPIYID--YVYPRQSGNVKKTNVQIGRMPMMLRSSRCVLSGRPESDMGM 170

Query: 96  LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
           L E A + GGYFI+ G E+V   +++ +Q     ++  SF         K ++   V   
Sbjct: 171 LNECAVDPGGYFIVRGQEKV---ILVQEQLSKNRIIVESF---------KGMIQASVTSH 218

Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYL--------LPVGIVLKALVDTNDLEIFNHLTC 207
            ++V  K Y +L          +G  YL        +PV I L+A+   +D EI   L  
Sbjct: 219 TANVKTKTYVVLK---------KGHLYLKHNSLTEDVPVAIALRAMGVQSDHEIL-LLAA 268

Query: 208 CYDEKYKKEKGAVGSPLVSERVKIILAEVQDLS-LTTRLQCLQH------IGEHFQPVID 260
             D +Y+ E       L    ++    + Q L  + TRL+  +        GE   P   
Sbjct: 269 GNDAQYQDE---FAPNLEMAALEGAFTQEQGLDYIATRLKPERFPVYASPTGEVKTPKQK 325

Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQE 320
            ++  +   +    + D  F        K   + FM +++   +    + D+ D + N+ 
Sbjct: 326 AMEKLAATIIPHVPVEDMNF------RPKALYIAFMTRRVLMAMIDPKLVDDRDYVGNKR 379

Query: 321 ILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGT 380
           + L G ++ +  ++  +D  R+    ++ +++ +    +F  L  I++        +I +
Sbjct: 380 LELAGQMLALLFEDLFKDCTRQIFINMEKQLKKSNPTAEFDPLRLIEQC-----DARITS 434

Query: 381 SIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VR 439
            +E  + TG    +       RAG T    RL+++  +     +   + F   R  S  R
Sbjct: 435 GMERAISTGNWTLKRF--RMDRAGVTHVLSRLSYISALGMMTRI--TSQFEKTRKVSGPR 490

Query: 440 KLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIR 483
            L P  +G LC   TP+GE CGL+ ++     + +  D  G +R
Sbjct: 491 ALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITT-ADEEGPVR 533


>gi|70906409|gb|AAZ14928.1| DNA-dependent RNA polymerase II second largest subunit [Coprinellus
            disseminatus]
          Length = 1241

 Score =  349 bits (895), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 315/1161 (27%), Positives = 489/1161 (42%), Gaps = 195/1161 (16%)

Query: 54   EFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLE 113
            E +  D G P   E+   G+ P+ML++  C L      +L  L E   + GGYFI+NG E
Sbjct: 175  ETEQEDTGEP---EKIWIGKVPIMLRSSFCILHQLRDNELYDLNECPYDSGGYFIINGSE 231

Query: 114  RVFRS----------VILPKQNYPMSM---VRSSFRDRREGYTDKAVVIRCVRKDQSSVT 160
            +V  +          V    Q  P++    +RS+    + G T     ++   ++Q    
Sbjct: 232  KVLIAQERMATNHVYVFAKAQPSPINFLAEIRSAVE--KGGKTISQFQVKMFHRNQERSM 289

Query: 161  LKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAV 220
              +       +++          +P+ +V +AL   +D +I  H+  CYD +   +   +
Sbjct: 290  GNVMKATIPYIKVD---------IPIWVVFRALGVISDRDILEHI--CYDMQ-DAQMLEM 337

Query: 221  GSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIF 280
              P + +   I   EV           L  IG   +    GL  E     A+ +++  + 
Sbjct: 338  LKPCIDDGFVIQDREV----------ALDFIGN--RGTTTGLSRERRIRYAQEILQKEML 385

Query: 281  VHLN----DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
             H++      + K     +M+ +L          D+ D    + + L G L+    +   
Sbjct: 386  PHISMAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGPLLAGLFRMLF 445

Query: 337  EDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
                +   + +Q  +E + +    FNL    K       + I   ++  L TG    Q  
Sbjct: 446  RKLTKDVYRYLQKCVETHKE----FNLTLAVK------QQTITNGLKYSLATGNWGDQKK 495

Query: 397  LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
              +  +AG +    R  +   +S  R  +      G +    R+L    WG +CP  TP+
Sbjct: 496  T-MSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREG-KIAKPRQLHNTHWGMVCPAETPE 553

Query: 457  GEPCGLL-NHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPA 515
            G+ CGL+ N    +C     Y +             ++  L   G+  SL +   S  P 
Sbjct: 554  GQACGLVKNLALMSCISVGSYSA------------PVIEFLEEWGL-ESLEENAHSSTPC 600

Query: 516  VLSVLLDGRVVGV--IPSSEIEKVVAHLRRLKVS-AASVIPDDLEVGYVPLSLGGAYPGL 572
               V ++G  +GV   P++ ++ +    R+  +S   SV+ D  E              L
Sbjct: 601  T-KVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRE------------REL 647

Query: 573  YLFTSPPKFVRP---VRNISLPSEE------------------------SQNIELI-GPF 604
             L+T   +  RP   V N  L  ++                        S  IEL+    
Sbjct: 648  RLYTDAGRVCRPLFIVENQQLLLQKKHIGWLNDGVDDQGEPYKWENLIKSGVIELLDAEE 707

Query: 605  EQVFMEIRCPDGGDGGRRNAF------------PA------------THEEIHPTGMLSV 640
            E+  M    P+  D  RR A             PA            TH EIHP+ +L +
Sbjct: 708  EETVMISMTPEDLDISRRQAEGEETPENDAEFDPAARLKAGTHAHTWTHCEIHPSMILGI 767

Query: 641  VANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTK 700
             A++ P+ DHNQSPRN YQ  M KQ MG  +     R D     L  PQ P+  T +   
Sbjct: 768  CASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEY 827

Query: 701  YGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGN--K 758
                E P G NAIVA+L Y+GY+ ED++I+N+SS+DRG+     Y++  +DL       +
Sbjct: 828  LKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRS-YMDLEKKSGALQ 886

Query: 759  VDRGQKLFRRN--KDAKSLHSVIDSDGLPYVGQ-------MIHPGEPYCSIYDKTTNSWR 809
            ++  +K  R    +     +  I+ DG    G        +I    P     ++     R
Sbjct: 887  LEEFEKPTRDTTLRMKHGTYDKIEDDGFIAPGTNVTGEDIIIGKTAPIPPDSEELGQRTR 946

Query: 810  TNSR-------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKG 862
             ++R       K +E+  VD V +         +   +R R TR P IGDKF+SRHGQKG
Sbjct: 947  AHTRRDVSTPLKSTENGIVDQVLITTNAEGQ--KFVKVRVRSTRIPQIGDKFASRHGQKG 1004

Query: 863  VCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPF 922
                 +   DMPF+   G+ PDLIINPHA PSRMTI  L+E + +K  +L G   DATPF
Sbjct: 1005 TIGITYRQEDMPFT-CEGIVPDLIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPF 1063

Query: 923  ANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYY 982
             +                 V+ +   LR  G+   G+EV+Y G  G +L  ++++GP YY
Sbjct: 1064 TDLT---------------VEAVSNFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYY 1108

Query: 983  QRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLH 1042
            QRL+HMV DK   R+ G +  +TRQP++GR R GG+RFGEMERD +++HG A  L +RL 
Sbjct: 1109 QRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGIAGFLKERLF 1168

Query: 1043 TCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVA 1102
              SD +   VC +CG    A                      +   C AC+       + 
Sbjct: 1169 EASDAYRLHVCDICGLTAIANL------------------KKQSFECRACKNKTACSQLY 1210

Query: 1103 MPYVFRYLAAELAAMNIKITL 1123
            +PY  + L  EL +MNI   L
Sbjct: 1211 IPYAAKLLFQELQSMNIAARL 1231


>gi|119182523|ref|XP_001242390.1| hypothetical protein CIMG_06286 [Coccidioides immitis RS]
 gi|392865284|gb|EAS31067.2| DNA-directed RNA polymerase III polypeptide [Coccidioides immitis RS]
          Length = 1233

 Score =  348 bits (894), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 200/517 (38%), Positives = 274/517 (52%), Gaps = 59/517 (11%)

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH EI P  +L  VA L PY  HNQSPRN YQC M KQ +G        R D  LY +  
Sbjct: 751  THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYTMVY 810

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
            PQ P+V+T T      D+ P G +A VAV++Y+GYD+EDA++LNK SVDRG    Q+++ 
Sbjct: 811  PQKPMVKTRTIELVKYDKLPAGQSATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRK 870

Query: 748  ETIDLSDDGNKV-DRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYC--SIYDKT 804
             + +L    N   DR     R++      H+++D+DGL  VG+ +  GE Y   +  +  
Sbjct: 871  YSANLKSYSNGTKDRLLGPDRQDGVPIRKHALLDNDGLAAVGEKVSSGEVYINKATPENA 930

Query: 805  TNSWRTNSRKGS--------------ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPII 850
             +S  T S  G               +  ++D V +     +N  Q   ++ R TR P +
Sbjct: 931  LSSGITGSDAGGPIAYIPSPQTYKLPDPSYIDKVMISTTEGEN--QLLKVQTRQTRRPEV 988

Query: 851  GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGG 910
            GDKFSSRHGQKGV   +    DMPF+   G+ PD+I+NPH FPSRMT+  +LE VA K G
Sbjct: 989  GDKFSSRHGQKGVVGIIAEQADMPFTD-QGIVPDIIMNPHGFPSRMTVGKMLELVAGKAG 1047

Query: 911  SLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTE 970
             L G+F   T F  S                V+E+  +L + GFNY G + L SG+ G  
Sbjct: 1048 ILSGQFGYGTAFGGSP---------------VEEMSAILISKGFNYGGKDYLTSGITGEA 1092

Query: 971  LTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLA 1030
            L   +F GP+YYQ+L+HMV DK   R+ G    +TRQP +GR R GG+R GEMERD L+A
Sbjct: 1093 LPAYVFTGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIA 1152

Query: 1031 HGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCH 1090
            +G + LL +RL   SD H  DVC  CG +    +                        C 
Sbjct: 1153 YGTSQLLLERLMISSDRHEVDVCENCGFMGYLGW------------------------CQ 1188

Query: 1091 ACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
             C+TS+G+  + +PY  + L  EL +MN+   L+L D
Sbjct: 1189 RCKTSRGVVKMVIPYAAKLLVQELFSMNVVARLKLAD 1225



 Score = 97.4 bits (241), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 115/458 (25%), Positives = 191/458 (41%), Gaps = 78/458 (17%)

Query: 36  DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
           + CR   ++Y   ++ D  F+Y+     V R     G+ PVML++ +C L     +++  
Sbjct: 188 NECRLRDMTYAAPILVD--FEYVRGRQRVKRNGTAIGRMPVMLRSSKCVLSKKSPREMYL 245

Query: 96  LKEEAAEMGGYFILNGLERVF--------RSVIL---PKQNYPMSMVRSSFRDRREGYTD 144
           L E   + GGYFI+NG E+V           VI+   PK+    + V SS  +R+     
Sbjct: 246 LHECPLDPGGYFIVNGTEKVILVQEQLSKNRVIVETDPKKEIVQASVTSSSNERKS---- 301

Query: 145 KAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNH 204
           K+ VI  ++KD+  + L+   L +               +PV I+LKA+   +D E+   
Sbjct: 302 KSYVI--LKKDR--IYLRHNVLSDD--------------IPVVILLKAMGIQSDKEML-L 342

Query: 205 LTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHF----QPVID 260
           L    D  Y+            E   I   E   L + T+ Q L+++G H     +P   
Sbjct: 343 LVAGVDSVYQ------------EDFAINFEESIKLGIYTQQQALEYLGSHIKITRKPNGF 390

Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNNDKFN----LLIFMLQKLFSLVDHTSVSDNPDSL 316
           G    +Y   A   I   I  H+   N  F      +  M +++      +S+ D+ D +
Sbjct: 391 GGGRRNYIQEAVEAIASVIISHVQVENMNFRPKALYVAHMARRVLMAKHDSSLVDDRDYV 450

Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKK------FDFFNLANIKKVM 370
            N+ + L G L+ +      ED  +K    I+  I+   KK      FD F++  I    
Sbjct: 451 GNKRLELAGQLLALL----FEDLFKKFCFDIKMNIDKVLKKPVRTEAFDAFSVVAIH--- 503

Query: 371 EKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASF 430
                  I   +   + TG  + +      +RAG T    RL+++  +     +   + F
Sbjct: 504 ----GNHITQGMNRAISTGNWSLKRF--RMERAGVTHVLSRLSYISALGMMTRI--SSQF 555

Query: 431 AGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMT 467
              R  S  R L P  +G LCP  TP+GE CGL+ ++ 
Sbjct: 556 EKTRKVSGPRALQPSQFGMLCPSDTPEGEACGLVKNLA 593


>gi|303319249|ref|XP_003069624.1| DNA-directed RNA polymerase III, putative [Coccidioides posadasii
            C735 delta SOWgp]
 gi|240109310|gb|EER27479.1| DNA-directed RNA polymerase III, putative [Coccidioides posadasii
            C735 delta SOWgp]
 gi|320040958|gb|EFW22891.1| DNA-directed RNA polymerase 3 subunit RPC2 [Coccidioides posadasii
            str. Silveira]
          Length = 1197

 Score =  348 bits (894), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 200/517 (38%), Positives = 274/517 (52%), Gaps = 59/517 (11%)

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH EI P  +L  VA L PY  HNQSPRN YQC M KQ +G        R D  LY +  
Sbjct: 715  THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYTMVY 774

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
            PQ P+V+T T      D+ P G +A VAV++Y+GYD+EDA++LNK SVDRG    Q+++ 
Sbjct: 775  PQKPMVKTRTIELVKYDKLPAGQSATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRK 834

Query: 748  ETIDLSDDGNKV-DRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYC--SIYDKT 804
             + +L    N   DR     R++      H+++D+DGL  VG+ +  GE Y   +  +  
Sbjct: 835  YSANLKSYSNGTKDRLLGPDRQDGVPIRKHALLDNDGLAAVGEKVSSGEVYINKATPENA 894

Query: 805  TNSWRTNSRKGS--------------ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPII 850
             +S  T S  G               +  ++D V +     +N  Q   ++ R TR P +
Sbjct: 895  LSSGITGSDAGGPIAYIPSPQTYKLPDPSYIDKVMISTTEGEN--QLLKVQTRQTRRPEV 952

Query: 851  GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGG 910
            GDKFSSRHGQKGV   +    DMPF+   G+ PD+I+NPH FPSRMT+  +LE VA K G
Sbjct: 953  GDKFSSRHGQKGVVGIIAEQADMPFTD-QGIVPDIIMNPHGFPSRMTVGKMLELVAGKAG 1011

Query: 911  SLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTE 970
             L G+F   T F  S                V+E+  +L + GFNY G + L SG+ G  
Sbjct: 1012 ILSGQFGYGTAFGGSP---------------VEEMSAILISKGFNYGGKDYLTSGITGEA 1056

Query: 971  LTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLA 1030
            L   +F GP+YYQ+L+HMV DK   R+ G    +TRQP +GR R GG+R GEMERD L+A
Sbjct: 1057 LPAYVFTGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIA 1116

Query: 1031 HGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCH 1090
            +G + LL +RL   SD H  DVC  CG +    +                        C 
Sbjct: 1117 YGTSQLLLERLMISSDRHEVDVCENCGFMGYLGW------------------------CQ 1152

Query: 1091 ACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
             C+TS+G+  + +PY  + L  EL +MN+   L+L D
Sbjct: 1153 RCKTSRGVVKMVIPYAAKLLVQELFSMNVVARLKLAD 1189



 Score = 97.1 bits (240), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 111/447 (24%), Positives = 184/447 (41%), Gaps = 56/447 (12%)

Query: 36  DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
           + CR   ++Y   ++ D  F+Y+     V R     G+ PVML++ +C L     +++  
Sbjct: 152 NECRLRDMTYAAPILVD--FEYVRGRQRVKRNGTAIGRMPVMLRSSKCVLSKKSPREMYL 209

Query: 96  LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
           L E   + GGYFI+NG E+    VIL ++    + V      ++E            RK 
Sbjct: 210 LHECPLDPGGYFIVNGTEK----VILVQEQLSKNRVIVETDPKKEIVQASVTSSSNERKS 265

Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
           +S V LK        + L   +   +  +PV I+LKA+   +D E+   L    D  Y+ 
Sbjct: 266 KSYVILK-----KDRIYLRHNVLSDD--IPVVILLKAMGIQSDKEML-LLVAGVDSVYQ- 316

Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHF----QPVIDGLQSESYYAVA 271
                      E   I   E   L + T+ Q L+++G H     +P   G    +Y   A
Sbjct: 317 -----------EDFAINFEESIKLGIYTQQQALEYLGSHIKITRKPNGFGGGRRNYIQEA 365

Query: 272 ETVIRDYIFVHLNDNNDKFN----LLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
              I   I  H+   N  F      +  M +++      +S+ D+ D + N+ + L G L
Sbjct: 366 VEAIASVIISHVQVENMNFRPKALYVAHMARRVLMAKHDSSLVDDRDYVGNKRLELAGQL 425

Query: 328 ITIYLKEKLEDWLRKGKKLIQDEIENNGKK------FDFFNLANIKKVMEKNPSKQIGTS 381
           + +      ED  +K    I+  I+   KK      FD F++  I           I   
Sbjct: 426 LALL----FEDLFKKFCFDIKMNIDKVLKKPVRTEAFDAFSVVAIH-------GNHITQG 474

Query: 382 IETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRK 440
           +   + TG  + +      +RAG T    RL+++  +     +   + F   R  S  R 
Sbjct: 475 MNRAISTGNWSLKRF--RMERAGVTHVLSRLSYISALGMMTRI--SSQFEKTRKVSGPRA 530

Query: 441 LLPESWGFLCPVHTPDGEPCGLLNHMT 467
           L P  +G LCP  TP+GE CGL+ ++ 
Sbjct: 531 LQPSQFGMLCPSDTPEGEACGLVKNLA 557


>gi|156937444|ref|YP_001435240.1| DNA-directed RNA polymerase subunit B [Ignicoccus hospitalis KIN4/I]
 gi|156566428|gb|ABU81833.1| DNA-directed RNA polymerase, subunit B' [Ignicoccus hospitalis
            KIN4/I]
          Length = 1132

 Score =  348 bits (893), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 325/1121 (28%), Positives = 491/1121 (43%), Gaps = 175/1121 (15%)

Query: 70   NFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMS 129
              G  PVM+++    L     ++LV   E+  + GGYFI++G E+V    I+ +++  ++
Sbjct: 119  EIGMMPVMVRSILDPLSKKSPEELVEAGEDPRDPGGYFIVDGSEKV----IVTQEDLALN 174

Query: 130  MVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFW-LQGKEYLLPVGI 188
             V       +   T  A V+      +  V ++     +G++   F  L GK   +P+ +
Sbjct: 175  KVLVDKGGPQSTVTHTAKVLSTTLGYRVQVIVERQK--DGTLHAIFPPLPGK---IPLVV 229

Query: 189  VLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCL 248
            +++AL   +D +I +     +D + ++E              ++ +  Q  S+ T    L
Sbjct: 230  LIRALGIESDKDITS--LVSFDPEVQQE--------------LLPSIEQAASVPTVDDAL 273

Query: 249  QHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQKLFSLV 304
              IG     +  G+  +     A+ V+ + +  HL     D   K   L  M +KL  + 
Sbjct: 274  DFIGAR---IAIGMPRDKRIERAKQVLDNNLLPHLGKRPEDRIKKAIFLAHMARKLLEVY 330

Query: 305  DHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLA 364
                  D+ D   N+ + L G ++    +  L   L      ++  +    ++     L 
Sbjct: 331  LEKREPDDKDHYANRRLKLAGDMLAALFRTHLRGLLNDVGYQLERSVLKGEERLKLRILI 390

Query: 365  NIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAV 424
                + +K                 R A  TG  +  R G +   +R N+L  +S  R V
Sbjct: 391  RSNYLTDKV----------------RQALATGNWVGNRTGVSQLLDRTNWLSTLSHLRRV 434

Query: 425  HRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVA---------SY 475
                +         R+L    WG +CP  TP+G   GL+ ++  +  ++           
Sbjct: 435  VSPLA-RNQPHYEARELHMTQWGRICPFETPEGPNIGLVKNLALSAHISVGVPEEEVEKV 493

Query: 476  YDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSS-EI 534
             D  G IR        +  VL  V     +P+   SG      V L+GR VG    + E+
Sbjct: 494  LDELGVIR--------VEEVLEKVKNDEPVPEEAISG----ARVFLNGRPVGYYKDAHEL 541

Query: 535  EKVVAHLRR-----LKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV---R 586
             + +  LRR      +VS      DD           G    +Y+ T P + +RPV    
Sbjct: 542  AQKIRQLRRQGKLHYEVSVGVYENDD-----------GTIKEVYINTDPGRVMRPVFVVE 590

Query: 587  NISLPSEESQNIELIGPFEQVFME------IRCPDGGDGGRRNAFPA----------THE 630
            N  L   + +++E +   E  F +      +   D  +    NA  A          TH 
Sbjct: 591  NGEL-KLKPEHVEKVKKGEWTFKDLLMRGIVELLDADE--EENALIAIEPEDITPKHTHM 647

Query: 631  EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQT 690
            EI    +  VVA+  PY +HNQSPRN YQ  MAKQ +G        R D + Y L  P+ 
Sbjct: 648  EIWVPAVFGVVASTIPYLEHNQSPRNSYQSAMAKQALGLYAANFMLRTDTRGYLLHYPEK 707

Query: 691  PIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG---QIYQT 747
            P+ +T      G ++ P G NA+ A+L+YTGY++EDA+I+N+SS+DRG       ++YQT
Sbjct: 708  PLAQTKHLEIIGYNKRPAGQNAVAAILSYTGYNIEDAIIMNQSSIDRGFMRATFMRLYQT 767

Query: 748  ETIDL----SDDGNKVDRGQKL--FRRNKDAKSLHSVIDSDGLP-----------YVGQM 790
            E         D   K    Q+L   R  K  + L    D DG+             +G+ 
Sbjct: 768  EEQKYPGGAEDKIEKPKPDQRLVGMREPKAYEKL----DEDGIVEPETYVVGGDVLIGKS 823

Query: 791  IHP--GEPY--CSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTR 846
              P   E Y    I +          R G E V VD V +  +N   + +   +R R  R
Sbjct: 824  SPPRFTEEYKEMGILETRRRDASVAVRHGEEGV-VDTVIL-TENIDGI-KMVKVRVRSLR 880

Query: 847  NPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVA 906
             P IGDKF+SRHGQKGV   + P  DMP+S   G+ PD+I+NPHAFPSRMT+  L+ES+A
Sbjct: 881  IPEIGDKFASRHGQKGVIGMVLPHYDMPYSEF-GLVPDIILNPHAFPSRMTLGQLIESIA 939

Query: 907  AKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGV 966
            AK  +  G+ +DATPF                K  +D L ++L   GF   G EV++ G 
Sbjct: 940  AKAAAFRGREVDATPF---------------YKEPLDNLRKILVERGFPPDGTEVMFDGR 984

Query: 967  YGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERD 1026
             G  +   +FIG V+YQRL HMVSDK   R+ G +  +TRQP +GR R GG+RFGEMERD
Sbjct: 985  TGEMIARPVFIGVVFYQRLYHMVSDKIHARARGPVQILTRQPTEGRTRKGGLRFGEMERD 1044

Query: 1027 SLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKK 1086
             L+AHGA+ LL +RL   SD     VC+ CG +                 G   A   K 
Sbjct: 1045 VLVAHGASQLLVERLLKSSDATKVWVCAKCGHI-----------------GWWDANKGKP 1087

Query: 1087 VTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
            V C        M  V + Y F+ L  E+ +M I   L+LGD
Sbjct: 1088 V-CPIHGERGEMYQVELSYAFKLLIQEILSMGIAARLRLGD 1127


>gi|452986015|gb|EME85771.1| hypothetical protein MYCFIDRAFT_40745, partial [Pseudocercospora
            fijiensis CIRAD86]
          Length = 1132

 Score =  348 bits (892), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 206/511 (40%), Positives = 271/511 (53%), Gaps = 56/511 (10%)

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH EI P  +L  VA L PY  HNQSPRN YQC M KQ +G        R D  LY +  
Sbjct: 661  THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFTRIDTLLYLMVY 720

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
            PQ P+V T T      D+ P G NA+VAV++Y+GYD+EDA++LNK+S DRG    QI++ 
Sbjct: 721  PQKPMVTTRTIELVKYDKLPAGQNAVVAVMSYSGYDIEDALVLNKASCDRGFGRCQIFKK 780

Query: 748  ETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPY---------C 798
             ++ L   GN      +L  R+  + + H  I  DGL  VG  +  G+ Y          
Sbjct: 781  ISMPLKAYGNGYT--DRLDDRDP-SNTRHRKIGKDGLVEVGSELENGDMYMLKASPINQS 837

Query: 799  SIYDKTTNSWRTN--SRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSS 856
                +    W     S K  +  + D V +    +     K  I+ R TR P IGDKFSS
Sbjct: 838  QAIPQKDQKWSPMHMSYKLPDPSYADKVMITANEANTTILK--IQTRQTRRPEIGDKFSS 895

Query: 857  RHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKF 916
            RHGQKGV   L    DMPFS  +G+ PD+I+NPH FPSRMT+  +LE V+ K G L GK 
Sbjct: 896  RHGQKGVVGLLAEQADMPFSD-SGVVPDIIMNPHGFPSRMTVGKMLELVSGKAGVLTGKQ 954

Query: 917  MDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIF 976
               TPF  S                V+++G +L   GF+Y G + L SG+ G  L   +F
Sbjct: 955  EYGTPFGGSK---------------VEDMGSILVKHGFSYSGKDHLTSGITGESLPFYVF 999

Query: 977  IGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYL 1036
             GP+YYQ+L+HMV DK   RSTG    +TRQP +GR R GG+R GEMERD L+A+GA+ L
Sbjct: 1000 FGPIYYQKLKHMVQDKMHSRSTGPRAILTRQPTEGRSRQGGLRLGEMERDCLIAYGASQL 1059

Query: 1037 LHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSK 1096
            L +RL   SD H  DVC  CG +    +                        C +C +S+
Sbjct: 1060 LLERLMISSDAHDVDVCQGCGMMGYNGW------------------------CQSCGSSR 1095

Query: 1097 GMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
            G+  + MPY  + L  EL +MN+K +LQL D
Sbjct: 1096 GVTKMTMPYAAKLLIQELMSMNVKASLQLAD 1126



 Score = 91.7 bits (226), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 102/453 (22%), Positives = 197/453 (43%), Gaps = 52/453 (11%)

Query: 36  DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
           + CR   ++Y   +  D  F Y      V +     G+ P+ML++ +C L+G    ++  
Sbjct: 102 NECRLRDMTYAAPIYLD--FIYPRQAGNVRKTNVLIGRLPMMLRSSKCVLKGRSESEMAC 159

Query: 96  LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
           L E A + GGYFI+ G E+V   +++ +Q     ++  SF         K V+   V   
Sbjct: 160 LNECAVDPGGYFIVRGQEKV---ILVQEQLSKNRVIVESF---------KGVIQASVTSH 207

Query: 156 QSSVTLKLYYLL-NGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYK 214
            ++V  K Y LL  G + L      ++  +PV ++L+A+   +D EI   L    D +Y+
Sbjct: 208 TANVKTKTYVLLKKGHIYLKHNSLSED--IPVAVMLRAMGVQSDHEIL-LLAAGNDAQYQ 264

Query: 215 KEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQS---------E 265
            E              + LA ++   + T+ Q L  I    +P  D   S         +
Sbjct: 265 DEFAP----------NLELAALE--GVFTQEQALDFIATRLKP--DRFASRRQERTPKQQ 310

Query: 266 SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPG 325
           +   +A T+I  ++ V   +   K   + FM +++   ++   + D+ D + N+ + L G
Sbjct: 311 ALEKLAGTII-PHVEVEGMNFRPKALYVAFMTRRVLMAMNDPKLVDDRDYVGNKRLELAG 369

Query: 326 HLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
            ++++  ++  +D +R+ K  +   ++      +F  L  ++++       +I + +E  
Sbjct: 370 QMLSLLFEDLFKDCVRQIKGNMDKILKKANPTQEFDPLRLVEQI-----ESRITSGMERA 424

Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPE 444
           + TG    +       RAG T    RL+++  +     +   + F   R  S  R L P 
Sbjct: 425 ISTGNWTLKRF--RMDRAGVTHVLSRLSYISALGMMTRIT--SQFEKTRKVSGPRALQPS 480

Query: 445 SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYD 477
            +G LC   TP+GE CGL+ ++     + +  D
Sbjct: 481 QFGMLCTSDTPEGEACGLVKNLALMTHITTADD 513


>gi|412992275|emb|CCO19988.1| DNA-directed RNA polymerase III subunit RPC2 [Bathycoccus prasinos]
          Length = 1251

 Score =  347 bits (891), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 266/892 (29%), Positives = 410/892 (45%), Gaps = 107/892 (11%)

Query: 274  VIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLK 333
            V+  ++ V   D   K   +  M++++     +    D+ D   N+ + L G L+ +  +
Sbjct: 412  VVLAHVPVEDYDFRGKSAYVCVMIRRILLANLNPEEVDDKDYYGNKRLELAGQLLALLFE 471

Query: 334  EKLE----DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
            +  +    D  R+   ++     N  ++FD      + K + ++    I   +E  + TG
Sbjct: 472  DCFKRLNADLKRQADAVLSKA--NRAQQFD------VVKCIRQD---TISNGLEHAISTG 520

Query: 390  RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPESWGF 448
                +      +R G T    RL+F+  I     +   + F   R  S  R L P  WG 
Sbjct: 521  NWTVKRFR--MERKGVTQVLSRLSFISAIGMMTRIT--SQFEKTRKVSGPRALQPSQWGM 576

Query: 449  LCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKL 508
            LCP  TP+GE CGL+ ++     V +  D    I+    +   +L  L G  +      L
Sbjct: 577  LCPSDTPEGESCGLVKNLALMTHVTTDSDEEPLIKLARALGCELLEHLAGEELHQKDSAL 636

Query: 509  VKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSA--ASVIPDDLEVGYVPLSLG 566
            V          LL+G ++G +  S+ ++     R+L+ S   +  +   +  G+V ++  
Sbjct: 637  V----------LLNGSILGSV--SQPKQFADKFRKLRRSGRISEFVSVHVTKGFVHIASD 684

Query: 567  GAYPGLYLFTSPPKFVRPVRNISLPSE----ESQNIELIGPFEQVFME------IRCPDG 616
            G            +  RP+  +   +     + ++++ +   E VF +      +   D 
Sbjct: 685  GG-----------RVCRPLIVVDETTGRLKMKQKHLDALKNKEWVFDDFLKRGYVEYLDV 733

Query: 617  GDGGRRNAFPATHE-----------EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQ 665
             +    +A+ A HE           EI P  +L V A + P+  HNQSPRN YQC M KQ
Sbjct: 734  NE--ENDAYIALHEKDLTADAHTHCEIEPFTLLGVCAGIIPFPHHNQSPRNTYQCAMGKQ 791

Query: 666  TMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDME 725
             MG        R D  +Y L + Q P+V T T      D    G NA++AVL+ TGYD+E
Sbjct: 792  AMGNLAFNQLNRMDTLMYTLCSAQKPLVTTKTIELIQYDRLGAGQNAVIAVLSNTGYDIE 851

Query: 726  DAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DRGQKLFRRNKDAKSLHSVIDSDGL 784
            DA+++N++S+DRG    Q+ +  +  +    N+  D+  K           + V+D DG 
Sbjct: 852  DAVVINRASLDRGFGRCQVSRKYSATMKKYANRTQDKVLKPSITQMKKMKNYRVLDDDGY 911

Query: 785  PYVGQMIHPGEPYCSIY------DKTTNSWRTNSR---------KGSE--SVFVDYVAVD 827
              VG  I   + Y + +      D  TN  +   R         +G E     VD V + 
Sbjct: 912  AQVGVRIRNKDIYINKHMPLNTRDPMTNPDQLPDREFRPAPQVYRGPEVDECVVDKVMLT 971

Query: 828  MKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLII 887
            + +      K  +R  HTR P +GDKFSSRHGQKGV   + P  D P +   G+ PDL++
Sbjct: 972  VTDENQFVVKTLVR--HTRRPEVGDKFSSRHGQKGVVGAILPQEDFPCTE-RGICPDLVM 1028

Query: 888  NPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGE 947
            NPH FPSRMT+  L+E +A K  S  G F DA+ FA++   +    GT      VDE+GE
Sbjct: 1029 NPHGFPSRMTVGKLIELLAGKAASEEGTFRDASAFASNDISSATAAGTTNKNESVDEIGE 1088

Query: 948  MLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQ 1007
             L   G+   G E L  G+ G  L   IF GPVYYQ+L+HMV DK   R+ G    +TRQ
Sbjct: 1089 ALLKAGYASDGKETLICGLTGEYLQARIFTGPVYYQKLKHMVLDKMHARARGPRVVLTRQ 1148

Query: 1008 PIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHP 1067
            P +GR R GG+R GEMERD L+ +GA+ L+ +RL   +D   A VC  CG +        
Sbjct: 1149 PTEGRARQGGLRLGEMERDCLIGYGASALVLERLMISADVFDAQVCVTCGLL-------- 1200

Query: 1068 QKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
               A R+       +A  +  CH+C     + T+ +PY  + L  EL +MNI
Sbjct: 1201 ---AYRD-------KASGRDCCHSCGIKAEVATLKVPYACKLLFQELQSMNI 1242



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 116/300 (38%), Gaps = 88/300 (29%)

Query: 9   FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
           F  +R LVR HIESFDY++DE + ++                                  
Sbjct: 59  FLKVRGLVRQHIESFDYLIDEEIKKIVSAKANNKVTCDSDPNFYLRYKNVSVGSPQTVDE 118

Query: 37  ----------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQ 86
                      CR   ++Y   +M DVE  Y      +       G+ P+ML++ RC L+
Sbjct: 119 RMVKQDITPQQCRLRDMTYAAPVMVDVE--YTKGKDIITTHDVCIGKIPLMLRSSRCCLR 176

Query: 87  GADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKA 146
                +L  L E   + GGYF++ G+E+V   +++ +Q   +S  R       +G    +
Sbjct: 177 NKGEDELARLGECPLDPGGYFVVKGVEKV---ILIQEQ---LSKNRVIIERDAKGLICAS 230

Query: 147 VVIRC-VRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--------LPVGIVLKALVDTN 197
           V      RK +++V  K                GK YL        +P+ I LKA+   +
Sbjct: 231 VTSSTHERKSKTNVVQK---------------GGKLYLKHNTFQEDIPIVIALKAMGLES 275

Query: 198 DLEIFNHLTCCYDEKYKKEKGAVGS-PLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ 256
           D E+              +K A GS PL    +   L E   L + T+ + L++ G+  +
Sbjct: 276 DQELM-------------QKAAGGSDPLCMSLLAPSLQECTALDVFTQSEALEYCGQRIR 322


>gi|240276965|gb|EER40475.1| DNA-directed RNA polymerase III [Ajellomyces capsulatus H143]
          Length = 1227

 Score =  347 bits (891), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 199/517 (38%), Positives = 277/517 (53%), Gaps = 59/517 (11%)

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH EI P  +L  VA L PY  HNQSPRN YQC M KQ +G        R D  LY +  
Sbjct: 745  THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGVIANNQFLRIDSLLYTMVY 804

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
            PQ P+V+T T      D+ P G +A VAV++Y+GYD+EDA++LNK SVDRG    Q+++ 
Sbjct: 805  PQKPMVKTRTIELIKYDKLPAGQSATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRK 864

Query: 748  ETIDLSDDGNKV-DRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCS--IYDKT 804
             + +L    N   D+ +   R N      H+++D+DGL  VG+ ++ GE Y +    +  
Sbjct: 865  YSTNLKSYSNGTKDKLKGPDRENGVPIRKHALLDNDGLAAVGEKVNYGEVYINKVTPENA 924

Query: 805  TNSWRTNSRKGS--------------ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPII 850
             +S  T S  G               +  ++D V +    ++N  Q   ++ R TR P +
Sbjct: 925  LSSGITGSDAGRPIAYIPSPQTYKLPDPSYIDKVMISATEAEN--QLIKVQTRQTRVPEV 982

Query: 851  GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGG 910
            GDKFSSRHGQKGV   +    DMPFS + G+ PD+I+NPH FPSRMT+  +LE +A K G
Sbjct: 983  GDKFSSRHGQKGVVGIIAEHADMPFSDL-GIVPDIIMNPHGFPSRMTVGKMLELIAGKAG 1041

Query: 911  SLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTE 970
             L G+F   T F  S                V+E+  +L   GF+Y G + L SG+ G  
Sbjct: 1042 ILSGQFGYGTAFGGSP---------------VEEMSAILVDHGFSYGGKDYLTSGITGEP 1086

Query: 971  LTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLA 1030
            L   +F+GP+YYQ+L+HMV DK   R+ G    +TRQP +GR R GG+R GEMERD L+A
Sbjct: 1087 LPAYVFMGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIA 1146

Query: 1031 HGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCH 1090
            +G + LL +RL   SD H  DVC  CG +    +                        C 
Sbjct: 1147 YGTSQLLLERLMISSDRHEVDVCENCGFMGYLGW------------------------CQ 1182

Query: 1091 ACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
             C+TS+G+  + +PY  + L  EL +MN+   L+L D
Sbjct: 1183 RCKTSRGVVKMVIPYAAKLLVQELFSMNVVARLKLAD 1219



 Score = 93.2 bits (230), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 107/454 (23%), Positives = 184/454 (40%), Gaps = 56/454 (12%)

Query: 36  DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
           + CR   ++Y   ++ D  F+Y+     V R     G+ PVML++ +C L      ++  
Sbjct: 182 NECRLRDMTYAAPILVD--FEYVRGRQRVKRNGTAIGRMPVMLRSSKCVLSNKSEAEMQL 239

Query: 96  LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
           L+E   + GGYFI+NG E+    VIL ++    + V      ++E            RK 
Sbjct: 240 LQECPLDPGGYFIVNGTEK----VILVQEQLSKNRVIVETDLKKEIVQASVTSSSNERKS 295

Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
           +S + LK         R+          +P+ I+LKA+   +D E+   L    D  ++ 
Sbjct: 296 KSYIILK-------KDRIYMRHNVLSEDVPIVILLKAMGIQSDKEML-LLVAGIDSTFQ- 346

Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHF----QPVIDGLQSESYYAVA 271
                      E   I   E   LS+ T+ Q L++IG       +P   G+   ++   A
Sbjct: 347 -----------EDFAINFEESVKLSIYTQHQALEYIGSRIKINRKPNSFGITRRNHVQEA 395

Query: 272 ETVIRDYIFVHLNDNNDKFN----LLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
              I   I  H+   N  F      +  M +++       S+ D+ D + N+ + L G L
Sbjct: 396 IEAISSVIISHVVVENLNFRPKALYVAHMARRVLMAKHDPSLVDDRDYVGNKRLELAGQL 455

Query: 328 ITIYLKEKLEDWLRKGKKLIQDEIENNGKK------FDFFNLANIKKVMEKNPSKQIGTS 381
           + +      ED  +K +  I+  I+   KK      FD + +  I           I   
Sbjct: 456 LALL----FEDLFKKFQFDIKMNIDKVLKKPVRTEQFDAYGVVAIH-------GNHITQG 504

Query: 382 IETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRK 440
           +   + TG  + +      +RAG T    RL+++  +     +   + F   R  S  R 
Sbjct: 505 MNRAISTGNWSLKRF--RMERAGVTHVLSRLSYIAALGMLTRI--SSQFEKTRKVSGPRA 560

Query: 441 LLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVAS 474
           L P  +G LCP  TP+GE CGL+ ++     + +
Sbjct: 561 LQPSQFGMLCPSDTPEGEACGLVKNLALMTHITT 594


>gi|406863176|gb|EKD16224.1| DNA-directed RNA polymerase III polypeptide [Marssonina brunnea f.
            sp. 'multigermtubi' MB_m1]
          Length = 1214

 Score =  347 bits (891), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 200/520 (38%), Positives = 283/520 (54%), Gaps = 62/520 (11%)

Query: 627  ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKF-RADQKLYHL 685
            +TH EI P  +L  VA L PY  HNQSPRN YQC M KQ +G S+   +F R D  LY +
Sbjct: 731  STHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIG-SIAYNQFSRIDTLLYLM 789

Query: 686  QTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIY 745
              PQ P+V+T T      D+ P G NA VAV++Y+GYD+EDA++LNKSS DRG    Q++
Sbjct: 790  VYPQQPMVKTRTIELIHYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSCDRGFGRCQVF 849

Query: 746  QTETIDLSDDGNK-VDR-GQKLFRRNKDAKSL--HSVIDSDGLPYVGQMIHPGEPYCSI- 800
            +   I L    N+  DR G ++      +K +  H ++ SDG+  VG+ I  GE +C+  
Sbjct: 850  RKNMISLKKYPNRSYDRIGDRVLDEKDPSKPIAKHRILTSDGIAAVGERIFSGEVFCNKE 909

Query: 801  -----------YDKTTNSWRTN--SRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRN 847
                        D  TN ++    S +  +  ++D V     +  +   K  ++ R TR 
Sbjct: 910  TPLNTISTGIGSDYGTNDYKPAPASYRAYDFAYIDKVMTTQNDRDDTIIK--VQTRQTRR 967

Query: 848  PIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAA 907
            P +GDKFSSRHGQKGV   +    DMPF+  +G+ PD+I+NPH FPSRMT+  +LE ++ 
Sbjct: 968  PELGDKFSSRHGQKGVVGIIVNQEDMPFAD-SGVCPDIIMNPHGFPSRMTVGKMLELLSG 1026

Query: 908  KGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVY 967
            K G L+G     T F  S                VD++G +L   GF+Y G + + SG+ 
Sbjct: 1027 KAGVLNGTLEYGTAFGGSN---------------VDDMGAILIKNGFSYSGKDFVTSGIT 1071

Query: 968  GTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDS 1027
            G  L   IF GP+YYQ+L+HMV DK   RS G    +TRQP +GR R GG+R GEMERD 
Sbjct: 1072 GEPLPAYIFFGPIYYQKLKHMVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEMERDC 1131

Query: 1028 LLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKV 1087
            L+A+GA+ LL +RL   SD H  D+C  CG +    +                       
Sbjct: 1132 LIAYGASQLLLERLMLSSDAHEVDICETCGLMGYQGW----------------------- 1168

Query: 1088 TCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
             C  C++++G+  + MPY  + L  E+ +MN+ + L+L D
Sbjct: 1169 -CQTCKSTRGVTKMTMPYAAKLLVQEMLSMNVLVRLKLAD 1207



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 106/453 (23%), Positives = 182/453 (40%), Gaps = 69/453 (15%)

Query: 36  DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
           + CR   ++Y   +   V  +Y+     + R     G+ P+ML++ +C L G D   +  
Sbjct: 168 NECRLRDLTYAAPIR--VNIKYIRGKQVIHRTDIAIGRLPIMLRSSKCRLSGGDDHDMAH 225

Query: 96  LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
           + E A + GGYFI+NG E+    VIL ++        S  R   E    K +V   V   
Sbjct: 226 MNECALDPGGYFIVNGTEK----VILVQEQL------SKNRVIVETDVKKGIVSASVTSS 275

Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
                 K Y LL    R+          +P+ I LKAL   +D E+   L    D  Y+ 
Sbjct: 276 THERKSKSYVLLKKE-RIVLQHNILNEAIPIVIALKALGIQSDHEML-LLVAGTDSTYQD 333

Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ---------------PVID 260
           +              +   E   + + ++ Q L+ IG   +                V D
Sbjct: 334 D------------FAVNFEECTKMGVFSQHQALEWIGTRVKMGSRKGTPGAPQRRNHVAD 381

Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQE 320
            L++ S      ++I  ++ VH  D   K   + FM++++        + D+ D + N+ 
Sbjct: 382 ALEALS------SIIITHVPVHGLDFRPKALYICFMVRRVLMANHDPKLVDDRDYVGNKR 435

Query: 321 ILLPGHLITIYLKEKLEDWLRKGKKLIQDEIE------NNGKKFDFFNLANIKKVMEKNP 374
           + L G L+++      ED  +K    ++  I+      N   +FD FN         ++ 
Sbjct: 436 LELAGQLLSLL----FEDLFKKFNSDLKMNIDKVLKKPNRTMQFDAFNHL-------QSH 484

Query: 375 SKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLR 434
              I   +   + TG  + +      +RAG T    RL+++  +     +   + F   R
Sbjct: 485 GNHITQGMNRAISTGNWSVKRF--KMERAGVTHVLSRLSYISALGMMTRI--SSQFEKTR 540

Query: 435 TTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHM 466
             S  R L P  +G LCP  TP+GE CGL+ ++
Sbjct: 541 KVSGPRALQPSQFGMLCPSDTPEGEACGLVKNL 573


>gi|325094900|gb|EGC48210.1| DNA-directed RNA polymerase III [Ajellomyces capsulatus H88]
          Length = 1227

 Score =  347 bits (891), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 199/517 (38%), Positives = 277/517 (53%), Gaps = 59/517 (11%)

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH EI P  +L  VA L PY  HNQSPRN YQC M KQ +G        R D  LY +  
Sbjct: 745  THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGVIANNQFLRIDSLLYTMVY 804

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
            PQ P+V+T T      D+ P G +A VAV++Y+GYD+EDA++LNK SVDRG    Q+++ 
Sbjct: 805  PQKPMVKTRTIELIKYDKLPAGQSATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRK 864

Query: 748  ETIDLSDDGNKV-DRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCS--IYDKT 804
             + +L    N   D+ +   R N      H+++D+DGL  VG+ ++ GE Y +    +  
Sbjct: 865  YSTNLKSYSNGTKDKLKGPDRENGVPIRKHALLDNDGLAAVGEKVNYGEVYINKVTPENA 924

Query: 805  TNSWRTNSRKGS--------------ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPII 850
             +S  T S  G               +  ++D V +    ++N  Q   ++ R TR P +
Sbjct: 925  LSSGITGSDAGRPIAYIPSPQTYKLPDPSYIDKVMISATEAEN--QLIKVQTRQTRVPEV 982

Query: 851  GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGG 910
            GDKFSSRHGQKGV   +    DMPFS + G+ PD+I+NPH FPSRMT+  +LE +A K G
Sbjct: 983  GDKFSSRHGQKGVVGIIAEHADMPFSDL-GIVPDIIMNPHGFPSRMTVGKMLELIAGKAG 1041

Query: 911  SLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTE 970
             L G+F   T F  S                V+E+  +L   GF+Y G + L SG+ G  
Sbjct: 1042 ILSGQFGYGTAFGGSP---------------VEEMSAILVDHGFSYGGKDYLTSGITGEP 1086

Query: 971  LTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLA 1030
            L   +F+GP+YYQ+L+HMV DK   R+ G    +TRQP +GR R GG+R GEMERD L+A
Sbjct: 1087 LPAYVFMGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIA 1146

Query: 1031 HGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCH 1090
            +G + LL +RL   SD H  DVC  CG +    +                        C 
Sbjct: 1147 YGTSQLLLERLMISSDRHEVDVCENCGFMGYLGW------------------------CQ 1182

Query: 1091 ACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
             C+TS+G+  + +PY  + L  EL +MN+   L+L D
Sbjct: 1183 RCKTSRGVVKMVIPYAAKLLVQELFSMNVVARLKLAD 1219



 Score = 92.0 bits (227), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 106/454 (23%), Positives = 183/454 (40%), Gaps = 56/454 (12%)

Query: 36  DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
           + CR   ++Y   ++ D  F+Y+     V R     G+ PVML++ +C L      ++  
Sbjct: 182 NECRLRDMTYAAPILVD--FEYVRGRQRVKRNGTAIGRMPVMLRSSKCVLSNKSEAEMQL 239

Query: 96  LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
           L+E   + GGYFI+NG E+    VIL ++    + V      ++E            RK 
Sbjct: 240 LQECPLDPGGYFIVNGTEK----VILVQEQLSKNRVIVETDLKKEIVQASVTSSSNERKS 295

Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
           +S + LK         R+          +P+ I+LKA+   +D E+   L    D  ++ 
Sbjct: 296 KSYIILK-------KDRIYMRHNVLSEDVPIVILLKAMGIQSDKEML-LLVAGIDSTFQ- 346

Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHF----QPVIDGLQSESYYAVA 271
                      E   I   E   L + T+ Q L++IG       +P   G+   ++   A
Sbjct: 347 -----------EDFAINFEESVKLGICTQHQALEYIGSRIKINRKPNSFGITRRNHVQEA 395

Query: 272 ETVIRDYIFVHLNDNNDKFN----LLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
              I   I  H+   N  F      +  M +++       S+ D+ D + N+ + L G L
Sbjct: 396 IEAISSVIISHVVVENLNFRPKALYVAHMARRVLMAKHDPSLVDDRDYVGNKRLELAGQL 455

Query: 328 ITIYLKEKLEDWLRKGKKLIQDEIENNGKK------FDFFNLANIKKVMEKNPSKQIGTS 381
           + +      ED  +K +  I+  I+   KK      FD + +  I           I   
Sbjct: 456 LALL----FEDLFKKFQFDIKMNIDKVLKKPVRTEQFDAYGVVAIH-------GNHITQG 504

Query: 382 IETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRK 440
           +   + TG  + +      +RAG T    RL+++  +     +   + F   R  S  R 
Sbjct: 505 MNRAISTGNWSLKRF--RMERAGVTHVLSRLSYIAALGMLTRI--SSQFEKTRKVSGPRA 560

Query: 441 LLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVAS 474
           L P  +G LCP  TP+GE CGL+ ++     + +
Sbjct: 561 LQPSQFGMLCPSDTPEGEACGLVKNLALMTHITT 594


>gi|344247350|gb|EGW03454.1| DNA-directed RNA polymerase II subunit RPB2 [Cricetulus griseus]
          Length = 807

 Score =  347 bits (891), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 263/849 (30%), Positives = 392/849 (46%), Gaps = 104/849 (12%)

Query: 311  DNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVM 370
            D+ D   N+ + L G L+    +   ++ L++ +   Q  I+  GK F+   LA IK   
Sbjct: 16   DDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDR-GKDFNL-ELA-IK--- 69

Query: 371  EKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASF 430
                ++ I   ++  L TG    Q     Q RAG +    RL F   +S  R ++     
Sbjct: 70   ----TRIISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGR 124

Query: 431  AGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRT 490
             G +    R+L    WG +CP  TP+G   GL+ ++     ++                +
Sbjct: 125  DG-KLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS-----------VGSQPS 172

Query: 491  SILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK----- 545
             IL  L    M  +L ++  +       + ++G  VG+    + E+++  LR+L+     
Sbjct: 173  PILEFLEEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDI 229

Query: 546  -VSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------- 597
             VS  S+I D  E      +  G      L     K +   R+I    E   N       
Sbjct: 230  IVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDL 289

Query: 598  -----IELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDH 650
                 +E I   E+  V + +   D  +         TH EIHP+ +L V A++ P+ DH
Sbjct: 290  VASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDH 349

Query: 651  NQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGT 710
            NQSPRN YQ  M KQ MG  +     R D   + L  PQ P+V T +       E P G 
Sbjct: 350  NQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGI 409

Query: 711  NAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNK 770
            N+IVA+ +YTGY+ ED++I+N+S+VDRG      Y++     S  G   D+ +   +  +
Sbjct: 410  NSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKG--FDQEEVFEKPTR 467

Query: 771  DA-----KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR-------- 813
            +       +++  +D DGL   G  +   +       ++ +       TN R        
Sbjct: 468  ETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCST 527

Query: 814  --KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDI 871
              + SE+  VD V V +       +   IR R  R P IGDKF+SRHGQKG C   +   
Sbjct: 528  FLRTSETGIVDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQE 585

Query: 872  DMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNG 931
            DMPF+   G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF ++V     
Sbjct: 586  DMPFT-CEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVN---- 640

Query: 932  DTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSD 991
                      V ++  +L   G++  G EVLY+G  G ++T +IFIGP YYQRL+HMV D
Sbjct: 641  ----------VQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDD 690

Query: 992  KFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVAD 1051
            K   R+ G +  + RQP++GR R GG+RFGEMERD  +AHGAA  L +RL   SD +   
Sbjct: 691  KIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVH 750

Query: 1052 VCSLCGSVLTA-TFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYL 1110
            VC+LCG +  A T  H  +                   C  C+    +  V MPY  + L
Sbjct: 751  VCNLCGIMAIANTRTHTYE-------------------CRGCRNKTQISLVRMPYACKLL 791

Query: 1111 AAELAAMNI 1119
              EL +M+I
Sbjct: 792  FQELMSMSI 800


>gi|6606093|gb|AAF19059.1|AF107787_1 DNA-dependent RNA polymerase II RPB140 [Candida albicans]
          Length = 1210

 Score =  347 bits (890), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 320/1136 (28%), Positives = 489/1136 (43%), Gaps = 182/1136 (16%)

Query: 71   FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSM 130
             G+ P+ML+++ C L+     +   LKE   +MGGYF++NG E+V    ++ ++    ++
Sbjct: 161  LGKVPIMLRSKFCMLRDLAEHEFYELKECPYDMGGYFVINGSEKV----LIAQERSAANI 216

Query: 131  VRSSFRDRREGYTDKAVVIRCVRKDQ---SSVTLKLYYLLNGSVRLGFWLQGKEYL---L 184
            V+   +      +  A +   + K     SS+ +KLY      V          Y+   +
Sbjct: 217  VQVFKKAAPSPISHVAEIRSAIEKGSRLISSMQIKLYGRDEKGVSGRTIKATLPYIKEDI 276

Query: 185  PVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTR 244
            P+ IV +AL    D +I  H+  CYD     +   +  P V E   I   EV        
Sbjct: 277  PIVIVFRALGVVPDGDILEHI--CYDAN-DWQMLEMLKPCVEEGFVIQEREV-------- 325

Query: 245  LQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNND----KFNLLIFMLQKL 300
               L  IG      + G++ E     A+ +++  +  ++         K   L +M+ +L
Sbjct: 326  --ALDFIGRRG---VLGIRREKRIQYAKDILQKELLPNITQEEGFETRKAFFLGYMVNRL 380

Query: 301  FSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDF 360
                      D+ D    + + L G L+    +   +   +     +Q  +EN G     
Sbjct: 381  LLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIYNYMQRCVENGGD---- 436

Query: 361  FNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISF 420
            FN+    K      S+ I   +   L TG    Q    +  RAG +    R  +   +S 
Sbjct: 437  FNVTLAVK------SQTITDGLRYSLATGNWGEQRKA-MSSRAGVSQVLNRYTYSSTLSH 489

Query: 421  FRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGL---LNHMTSTCRVASYYD 477
             R  +      G +    R+L    WG +CP  TP+G+ CGL   L+ MT          
Sbjct: 490  LRRTNTPIGRDG-KIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTPSEP 548

Query: 478  SRGNIRDF--------------SKMRTSILRVLIGVGMIPS-----LPKLVKSG--PPAV 516
              G +RD+                 R  +  V +GV   P+     + +L +SG   P V
Sbjct: 549  ILGFLRDYGLEVLEDYVPSNAPDSTRVFVNGVWVGVHRDPAALVDFMRELRRSGDLSPEV 608

Query: 517  LSVLLDGR------------------VVGVIPSSE----IEKVVAHLRRL---------- 544
             S++ D R                  +V   P SE    ++    H+++L          
Sbjct: 609  -SIIRDIREKEFKIFTDAGRVYRPLFIVDDNPDSETKGELKITKEHVKQLLRSDELDEDD 667

Query: 545  ------KVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNI 598
                  + + +S++ D + V YV            +    P  V+  +N S+   E Q I
Sbjct: 668  EDYENSRYTWSSLVADGI-VEYV----DAEEEETIMIAMTPDDVKASKN-SVSESEQQKI 721

Query: 599  ELIGPFEQVFMEIRCPDGGDGGRR-------NAFPATHEEIHPTGMLSVVANLTPYSDHN 651
            +L    EQ           D G+R       N    TH EIHP+ +L V A++ P+ DHN
Sbjct: 722  QL---EEQEL---------DPGKRIKPTTSGNTHTYTHCEIHPSMILGVAASIIPFPDHN 769

Query: 652  QSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTN 711
            QSPRN YQ  M KQ MG  +     R D     L  PQ P+  T +       E P G N
Sbjct: 770  QSPRNTYQSAMGKQAMGVFLTNYSVRMDTMANILYYPQKPLGTTRSMEYLKFRELPAGQN 829

Query: 712  AIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKD 771
            AIVA+  Y+GY+ ED+MI+N+SS+DRG+     +++        G K     +   R+  
Sbjct: 830  AIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDIEKRQGMKALETFEKPTRSDT 889

Query: 772  AKSLHSV---IDSDGL--PYV---GQMIHPGEPYCSIYDKTTNSWRTNSR---------K 814
             +  H     +D DGL  P V   G+ I  G+      D      RT            +
Sbjct: 890  LRLKHGTYEKLDEDGLIAPGVRVSGEDIIIGKTTPIPADAEELGQRTQYHTKRDASTPLR 949

Query: 815  GSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMP 874
             +ES  VD V   +  + +  +   +R R T+ P IGDKF+SRHGQKG     +   DMP
Sbjct: 950  STESGIVDQVL--LTTNGDGSKFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRHEDMP 1007

Query: 875  FSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTG 934
            F+   G+ PDLIINPHA PSRMT+A L+E + +K  SL G   DA+PF +          
Sbjct: 1008 FTA-EGIVPDLIINPHAIPSRMTVAHLIECLLSKVSSLSGFEGDASPFTDVT-------- 1058

Query: 935  TDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQ 994
                    +++  +LR  G+   G EV+Y+G  G +L  ++F GP YYQRLRHMV DK  
Sbjct: 1059 -------TEQISTLLRDHGYQSRGFEVMYNGHTGKKLMAQVFFGPTYYQRLRHMVDDKIH 1111

Query: 995  VRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCS 1054
             R+ G +  +TRQP++GR R GG+RFGEMERD ++AHGAA  L +RL   SD     VC 
Sbjct: 1112 ARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCG 1171

Query: 1055 LCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYL 1110
            +CG  L +   + +K                +  C +C+    +  + +PY  + L
Sbjct: 1172 MCG--LMSVIANLKK---------------NQFECRSCKNKTNIYQIHIPYAAKLL 1210


>gi|354544175|emb|CCE40898.1| hypothetical protein CPAR2_109360 [Candida parapsilosis]
          Length = 1228

 Score =  347 bits (890), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 315/1139 (27%), Positives = 492/1139 (43%), Gaps = 174/1139 (15%)

Query: 71   FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSM 130
             G+ P+M++++ C L+     ++  LKE   +MGGYF++NG E+    V++ ++    ++
Sbjct: 159  LGKVPIMVRSKFCMLRDLGEHEMYELKECPYDMGGYFVINGSEK----VLIAQERSAANI 214

Query: 131  VRSSFRDRREGYTDKAVVIRCVRKDQ---SSVTLKLYYLLNGSVRLGFWLQGKEYL---L 184
            V+   +      +  A +   + K     S++ +KLY     S           Y+   +
Sbjct: 215  VQVFKKAAPSPISHVAEIRSAIEKGSRLISAMQIKLYGRDEKSSSARTIKATLPYIKEDI 274

Query: 185  PVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTR 244
            P+ IV +AL    D +I  H+  CYD     +   +  P V E   I   EV        
Sbjct: 275  PIVIVFRALGVVPDGDILEHI--CYDAN-DWQMLEMLKPCVEEGFVIQEREV-------- 323

Query: 245  LQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNND----KFNLLIFMLQKL 300
               L  IG      + G++ E     A+ +++  +  ++         K   L +M+ +L
Sbjct: 324  --ALDFIGRRG---VLGIRREKRIQYAKDILQKELLPNITQEEGFETRKAFFLGYMVNRL 378

Query: 301  FSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDF 360
                      D+ D    + + L G L+    +   +   +     +Q  +EN+ +    
Sbjct: 379  LLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIYNYMQRCVENDKE---- 434

Query: 361  FNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISF 420
            FNL    K      S+ I   +   L TG    Q    +  RAG +    R  +   +S 
Sbjct: 435  FNLTLAVK------SQTITDGLRYSLATGNWGEQKKA-MSSRAGVSQVLNRYTYSSTLSH 487

Query: 421  FRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRG 480
             R  +      G +    R+L    WG +CP  TP+G+ CGL+ +++    ++       
Sbjct: 488  LRRTNTPIGRDG-KIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCIS------- 539

Query: 481  NIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAH 540
             +   S+  +S LR     G+ P L   V S  P    V ++G  VGV    E   +V +
Sbjct: 540  -VGTPSEPISSFLR---DWGLEP-LEDYVPSNSPDATRVFVNGVWVGV--HREPASLVDY 592

Query: 541  LRRLKVSA-----ASVIPDDLEVGY-VPLSLGGAYPGLYLFTSPP------------KFV 582
            +R L+ +       S+I D  E    +    G  Y  L++    P            + V
Sbjct: 593  MRDLRRNGDISPEVSIIRDIREKELKIFTDAGRVYRPLFIVDDNPDSETKGDLKLKKEHV 652

Query: 583  RPVRNISLPSEESQN------------IELI-GPFEQVFMEIRCPDGGDGGRRNAFPATH 629
              +   S   +E +             +E +    E+  M    PD  +  + N      
Sbjct: 653  NRLLESSYDGDEDEPSYTWSSLVREGIVEYVDAEEEETIMIAMTPDDLEASKSNLTETQQ 712

Query: 630  EE-------------IHPTG----------------MLSVVANLTPYSDHNQSPRNMYQC 660
            ++             I PTG                +L V A++ P+ DHNQSPRN YQ 
Sbjct: 713  QDLQMEEQELDPAKRIKPTGSSNTHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQS 772

Query: 661  QMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYT 720
             M KQ MG  +     R D     L  PQ P+  T         E P G NAIVA+  Y+
Sbjct: 773  AMGKQAMGVFLTNYAVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAIVAIACYS 832

Query: 721  GYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSL----- 775
            GY+ ED+MI+N+SS+DRG      +++  +DL  +  +  +  + F +   + +L     
Sbjct: 833  GYNQEDSMIMNQSSIDRGFFRSLFFRS-YMDL--EKRQGMKALETFEKPSRSDTLRLKHG 889

Query: 776  -HSVIDSDGL--PYV---GQMIHPGEPYCSIYDKTTNSWRTNSR---------KGSESVF 820
             +  +D DGL  P V   G+ I  G+      D      RT            + +ES  
Sbjct: 890  TYEKLDDDGLIAPGVRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGI 949

Query: 821  VDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTG 880
            VD V   +  + +  +   +R R T+ P IGDKF+SRHGQKG     +   DMPF+   G
Sbjct: 950  VDQVL--LTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRHEDMPFTA-EG 1006

Query: 881  MRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKS 940
            + PDLIINPHA PSRMT+A L+E + +K  SL G   DA+PF +                
Sbjct: 1007 IVPDLIINPHAIPSRMTVAHLIECLLSKVSSLSGLEGDASPFTDVT-------------- 1052

Query: 941  LVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGT 1000
              + + ++LR  G+   G EV+Y+G  G +L  ++F GP YYQRLRHMV DK   R+ G 
Sbjct: 1053 -AEAISKLLREHGYQSRGFEVMYNGHTGKKLMAQVFFGPTYYQRLRHMVDDKIHARARGP 1111

Query: 1001 MDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVL 1060
            +  +TRQP++GR R GG+RFGEMERD ++AHGAA  L +RL   SD     VC  CG + 
Sbjct: 1112 VQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGSCGLM- 1170

Query: 1061 TATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
              T I   K+               +  C +C+    +  + +PY  + L  EL AMNI
Sbjct: 1171 --TVIANLKK--------------NQFECRSCKNKTNIYQIHIPYAAKLLFQELMAMNI 1213


>gi|225554621|gb|EEH02917.1| DNA-directed RNA polymerase III polypeptide [Ajellomyces capsulatus
            G186AR]
          Length = 1227

 Score =  347 bits (890), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 199/517 (38%), Positives = 277/517 (53%), Gaps = 59/517 (11%)

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH EI P  +L  VA L PY  HNQSPRN YQC M KQ +G        R D  LY +  
Sbjct: 745  THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYTMVY 804

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
            PQ P+V+T T      D+ P G +A VAV++Y+GYD+EDA++LNK SVDRG    Q+++ 
Sbjct: 805  PQKPMVKTRTIELIKYDKLPAGQSATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRK 864

Query: 748  ETIDLSDDGNKV-DRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCS--IYDKT 804
             + +L    N   D+ +   R N      H+++D+DGL  VG+ ++ GE Y +    +  
Sbjct: 865  YSTNLKSYSNGTKDKLKGPDRENGVPIRKHALLDNDGLAAVGEKVNHGEVYINKVTPENA 924

Query: 805  TNSWRTNSRKGS--------------ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPII 850
             +S  T S  G               +  ++D V +    ++N  Q   ++ R TR P +
Sbjct: 925  LSSGITGSDAGRPIAYIPSPQTYKLPDPSYIDKVMISATEAEN--QLIKVQTRQTRVPEV 982

Query: 851  GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGG 910
            GDKFSSRHGQKGV   +    DMPFS + G+ PD+I+NPH FPSRMT+  +LE +A K G
Sbjct: 983  GDKFSSRHGQKGVVGIIAEHADMPFSDL-GIVPDIIMNPHGFPSRMTVGKMLELIAGKAG 1041

Query: 911  SLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTE 970
             L G+F   T F  S                V+E+  +L   GF+Y G + L SG+ G  
Sbjct: 1042 ILSGQFGYGTAFGGSP---------------VEEMSAILVDHGFSYGGKDYLTSGITGEP 1086

Query: 971  LTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLA 1030
            L   +F+GP+YYQ+L+HMV DK   R+ G    +TRQP +GR R GG+R GEMERD L+A
Sbjct: 1087 LPAYVFMGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIA 1146

Query: 1031 HGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCH 1090
            +G + LL +RL   SD H  DVC  CG +    +                        C 
Sbjct: 1147 YGTSQLLLERLMISSDRHEVDVCENCGFMGYLGW------------------------CQ 1182

Query: 1091 ACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
             C+TS+G+  + +PY  + L  EL +MN+   L+L D
Sbjct: 1183 RCKTSRGVVKMVIPYAAKLLVQELFSMNVVARLKLAD 1219



 Score = 91.3 bits (225), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 106/454 (23%), Positives = 183/454 (40%), Gaps = 56/454 (12%)

Query: 36  DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
           + CR   ++Y   ++ D  F+Y+     V R     G+ PVML++ +C L      ++  
Sbjct: 182 NECRLRDMTYAAPILVD--FEYVRGRQRVKRNGTAIGRMPVMLRSSKCVLSNKSEAEMQL 239

Query: 96  LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
           L+E   + GGYFI+NG E+    VIL ++    + V      ++E            RK 
Sbjct: 240 LQECPLDPGGYFIVNGTEK----VILVQEQLSKNRVIVETDLKKEIVQASVTSSSNERKS 295

Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
           +S + LK         R+          +P+ I+LKA+   +D E+   L    D  ++ 
Sbjct: 296 KSYIILK-------KDRIYMRHNVLSEDVPIVILLKAMGIQSDKEML-LLVAGIDSTFQ- 346

Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHF----QPVIDGLQSESYYAVA 271
                      E   I   E   L + T+ Q L++IG       +P   G+   ++   A
Sbjct: 347 -----------EDFAINFEESVKLGIYTQHQALEYIGSRIKINRKPNSFGITRRNHVQEA 395

Query: 272 ETVIRDYIFVHLNDNNDKFN----LLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
              I   I  H+   N  F      +  M +++       S+ D+ D + N+ + L G L
Sbjct: 396 IEAISSVIISHVVVENLNFRPKALYVAHMARRVLMAKHDPSLVDDRDYVGNKRLELAGQL 455

Query: 328 ITIYLKEKLEDWLRKGKKLIQDEIENNGKK------FDFFNLANIKKVMEKNPSKQIGTS 381
           + +      ED  +K +  I+  I+   KK      FD + +  I           I   
Sbjct: 456 LALL----FEDLFKKFQFDIKMNIDKVLKKPVRTEQFDAYGVVAIH-------GNHITQG 504

Query: 382 IETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRK 440
           +   + TG  + +      +RAG T    RL+++  +     +   + F   R  S  R 
Sbjct: 505 MNRAISTGNWSLKRF--RMERAGVTHVLSRLSYIAALGMMTRI--SSQFEKTRKVSGPRA 560

Query: 441 LLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVAS 474
           L P  +G LCP  TP+GE CGL+ ++     + +
Sbjct: 561 LQPSQFGMLCPSDTPEGEACGLVKNLALMTHITT 594


>gi|70606496|ref|YP_255366.1| DNA-directed RNA polymerase subunit B [Sulfolobus acidocaldarius DSM
            639]
 gi|449066708|ref|YP_007433790.1| DNA-directed RNA polymerase subunit B [Sulfolobus acidocaldarius N8]
 gi|449068982|ref|YP_007436063.1| DNA-directed RNA polymerase subunit B [Sulfolobus acidocaldarius
            Ron12/I]
 gi|73920765|sp|P11513.2|RPOB_SULAC RecName: Full=DNA-directed RNA polymerase subunit B
 gi|68567144|gb|AAY80073.1| DNA directed RNA polymerase subunit B [Sulfolobus acidocaldarius DSM
            639]
 gi|449035216|gb|AGE70642.1| DNA-directed RNA polymerase subunit B [Sulfolobus acidocaldarius N8]
 gi|449037490|gb|AGE72915.1| DNA-directed RNA polymerase subunit B [Sulfolobus acidocaldarius
            Ron12/I]
          Length = 1126

 Score =  347 bits (890), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 303/1119 (27%), Positives = 494/1119 (44%), Gaps = 161/1119 (14%)

Query: 61   GSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVI 120
            G P+       G  P+MLK+           KL+ + E+  + GGYFI+NG E+V    I
Sbjct: 107  GEPI---EIYIGDLPIMLKSVADPTSNLPIDKLIEIGEDPKDPGGYFIVNGSEKV----I 159

Query: 121  LPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFW-LQG 179
            + +++   + V   +       T  A V       +  V ++   L + ++++ F  + G
Sbjct: 160  IAQEDLATNRVLVDYGKSGSNITHVAKVTSSAAGYRVQVMIE--RLKDSTIQISFATVPG 217

Query: 180  KEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDL 239
            +   +P  I+++AL    D +I        D + + E              ++ +  Q  
Sbjct: 218  R---IPFAIIMRALGFVTDRDIV--YAVSLDPQIQNE--------------LLPSLEQAS 258

Query: 240  SLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHL----NDNNDKFNLLIF 295
            S+T+  + L  IG     V  G + E+    AE VI  Y   HL     D   K   L  
Sbjct: 259  SITSAEEALDFIGNR---VAIGQKRENRIQKAEQVIDKYFLPHLGTSPEDRKKKGYYLAS 315

Query: 296  MLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQ--DEIEN 353
             + K+  L       D+ D   N+ + L G L T   +   + ++   K L+   ++ + 
Sbjct: 316  AVNKILELYLGRREPDDKDHYANKRVRLAGDLFTSLFRVAFKAFV---KDLVYQLEKSKV 372

Query: 354  NGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLN 413
             G++     L     + E+                 R A  TG  +  R G +   +R N
Sbjct: 373  RGRRLSLTALVRADIITERI----------------RHALATGNWVGGRTGVSQLLDRTN 416

Query: 414  FLRFISFFRAVHRGASFA-GLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRV 472
            +L  +S  R V   +S A G      R L    WG +CP  TP+G   GL+ ++    +V
Sbjct: 417  WLSMLSHLRRVV--SSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNLALLAQV 474

Query: 473  ASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPP---------AVLSVLLDG 523
            +   +            + + RV   +G++ S+  +++             +   V L+G
Sbjct: 475  SVGINE-----------SVVERVAYELGVV-SVEDVIRRISEQNEDVEKYMSWSKVYLNG 522

Query: 524  RVVGVIPS-SEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFV 582
            R++G      E+ K +   RR        + D++ V Y+          +++     +  
Sbjct: 523  RLLGYYEDGKELAKKIRESRR-----QGKLSDEVNVAYIATDYLNE---VHINCDAGRVR 574

Query: 583  RP--VRNISLPSEESQNIELIGPFEQVFME------IRCPDGGDGGRRNAFPA------- 627
            RP  + N   P  ++++I+ +   E  F +      I   D  +    NA+ A       
Sbjct: 575  RPLIIVNNGTPLVDTEDIKKLKNGEITFDDLVKQGKIEFIDAEE--EENAYVALNPQDLT 632

Query: 628  ---THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
               TH EI P+ +L ++A++ PY +HNQSPRN YQ  MAKQ++G      + R D + + 
Sbjct: 633  PDHTHLEIWPSAILGIIASIIPYPEHNQSPRNTYQSAMAKQSLGLYASNYQIRTDTRAHL 692

Query: 685  LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG-- 742
            L  PQ P+V+T      G ++ P G NAI+A+++YTGY+MED++I+NKSS++RGM     
Sbjct: 693  LHYPQMPLVQTRMLGVIGYNDRPAGANAILAIMSYTGYNMEDSIIMNKSSIERGMYRSTF 752

Query: 743  -QIYQTETIDL----------SDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMI 791
             ++Y TE +             + G K  +G+  +R  +D   +   ++  G   +   +
Sbjct: 753  FRLYSTEEVKYPGGQEDKIVTPEAGVKGYKGKDYYRLLEDNGVVSPEVEVKGGDVLIGKV 812

Query: 792  HPGEPYCSIYDKTTNSWRTNSR---KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNP 848
             P        + +    + ++    +  E+  VD V +      N  +   +R R  R P
Sbjct: 813  SPPRFLQEFKELSPEQAKRDTSIVTRHGENGIVDLVLITETLEGN--KLVKVRVRDLRIP 870

Query: 849  IIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
             IGDKF++RHGQKGV   L   +DMP++   G+ PD+I+NPHA PSRMTI  ++E++  K
Sbjct: 871  EIGDKFATRHGQKGVVGILIDQVDMPYTA-KGIVPDIILNPHALPSRMTIGQIMEAIGGK 929

Query: 909  GGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYG 968
              +L GK +DATPF  + K              + E+ + +   G      EV+Y G  G
Sbjct: 930  YAALSGKPVDATPFLETPK--------------LQEMQKEILKLGHLPDSTEVVYDGRTG 975

Query: 969  TELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSL 1028
             +L   I  G VYYQ+L HMV+DK   R+ G +  +TRQP +GR R GG+RFGEMERD L
Sbjct: 976  QKLKSRILFGIVYYQKLHHMVADKMHARARGPVQILTRQPTEGRAREGGLRFGEMERDCL 1035

Query: 1029 LAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVT 1088
            +  G A L+ DRL   SD  V  +C  CG V                      R+  +  
Sbjct: 1036 IGFGTAMLIKDRLLDNSDKAVVYICDQCGYVGWYD------------------RSKNRYV 1077

Query: 1089 CHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
            C        +  V + Y F+ L  EL +M I   L LG+
Sbjct: 1078 CPVHGDKSVLHPVTVSYAFKLLIQELMSMVISPRLILGE 1116


>gi|343477106|emb|CCD11984.1| unnamed protein product [Trypanosoma congolense IL3000]
          Length = 1186

 Score =  347 bits (889), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 317/1124 (28%), Positives = 489/1124 (43%), Gaps = 164/1124 (14%)

Query: 67   ERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNY 126
            +    G+ P+MLK+ RC+L   D ++L  L E   + GGYFI+NG E+V    ++ ++  
Sbjct: 163  QNMELGRIPIMLKSMRCNLLNKDEEELPRLNECPHDQGGYFIVNGTEKV----LIAQERQ 218

Query: 127  PMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLL---NGSVRLGFWLQGKEYL 183
              + V +  R +      K++V   + K ++   L  Y      +G   L   +   + L
Sbjct: 219  AANHVYAFTRPKGLLCEIKSIVEGSLNKPRTLQILMPYKKSGPGHGYENLLCRVAQMDEL 278

Query: 184  LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTT 243
            +P+ I+ +AL   +D EI    T   D K            + E ++  + +   L + T
Sbjct: 279  IPLFILFRALDMGSDKEILQ--TVVPDLK---------DAAMLEMLRGSMEDASTLQVFT 327

Query: 244  RLQCLQHIGEHF--QPVIDGLQSESYYAVAETVIRD---YIFVHLNDNNDKFNLLIFMLQ 298
            R + L  IG+    Q   D LQ E+     + ++RD   ++ V    +  K   + +M+ 
Sbjct: 328  RDEALWFIGKRLGKQDSRDNLQREA----QDLLMRDLLPHMGVDCAADRSKCLFIGYMVH 383

Query: 299  KLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKF 358
            +L  L        + D L ++ I + G L+T  L + L    R+  + + D   N     
Sbjct: 384  RLLLLALGRREDTDRDFLGHKRIDVAGSLLTFQLNQFLVQVRREMTRTVHDFSTNRSGVV 443

Query: 359  DFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFI 418
             F  + +         S+ I   +   L TG        ++  + G +    RL +   +
Sbjct: 444  SFGRILH---------SRLITDGMRRCLATGNFGDLKSGNI--KTGVSQTLNRLTYSSSL 492

Query: 419  SFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDS 478
            S  R +    S A  + T  R L    WG++CPV TP+G   GLL ++   C V+   D 
Sbjct: 493  SNLRRIQNPIS-ASSKATRPRNLHCTQWGYICPVETPEGGSIGLLKNLALMCLVSRGSDH 551

Query: 479  RGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV---------- 528
             G ++      T    +            L       V  V ++G ++GV          
Sbjct: 552  TGVVQVVQSRTTGFHSI-----------TLADLADVRVARVFVNGTLIGVHADPERLLRE 600

Query: 529  ----IPSSEIEKVVAHLRRLKVSAASVIPDD---------LEVGYVPLSLG--------G 567
                    E+   V+ +R ++     V  D          +E   V L  G         
Sbjct: 601  LRARRRGGELSNEVSVVRDIRDREIRVFSDGGRCLRPLFVVEKSRVKLQKGKIGELLEPS 660

Query: 568  AYPGLYLFTSPPKFVRP--VRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAF 625
            A PG     S  + ++   V  +    E+S  I + GP E                +N F
Sbjct: 661  AAPGGRREISWSRVMKKGYVELVDCEEEDSLLIAM-GPSEV--------------GKNYF 705

Query: 626  PATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHL 685
              +H E+ P+ +L + A++ PY +HNQSPRN YQ  M KQ MG        R D   + L
Sbjct: 706  -YSHCEMDPSMILGICASIIPYPNHNQSPRNTYQSAMGKQAMGVYASNFNMRMDTTAHVL 764

Query: 686  QTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIY 745
              PQ P+VRT   +    ++ P G NAIVA+  Y+GY+ ED++I+++S+V+RG      +
Sbjct: 765  FYPQKPLVRTKAMSYMRSNDLPAGHNAIVAIACYSGYNQEDSIIMSRSAVERGFFRSVFW 824

Query: 746  QTETIDLSDDGNKVDRGQKLFRRNKDAKSLH------SVIDSDGL-----PYVGQMIHPG 794
            ++          K   GQ++F    D K  H      + +D+DGL     P +G  I  G
Sbjct: 825  RS----YKASEEKKREGQEMFE-IPDRKVCHVKRADYTKLDTDGLIKPGIPVIGGDIIVG 879

Query: 795  E----PYCSIYDKTTNSWRTNSR------KGSESVFVDYVAVDMKNSKNLPQKANIRFRH 844
            +    P     D T  + R   R      + +E   VD V +  +N  N   K  +R R 
Sbjct: 880  KTIPIPESMREDTTLTNTRILKRDCSISSRTAEKGVVDRVML-TENKGNRFTK--VRIRT 936

Query: 845  TRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLES 904
             + P IGDKF S HGQKG     +   D+PF+   G+ PDLIINPHA PSRMT+A L+E+
Sbjct: 937  IKIPNIGDKFCSPHGQKGTNGIQFRQEDLPFNN-DGISPDLIINPHAIPSRMTVAHLIET 995

Query: 905  VAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYS 964
            +A K     G  + ATPF + V               V++ G+ L     N +G E LY+
Sbjct: 996  LAGKVACFKGGEVYATPFCSVV---------------VEDFGKALTQLNLNRYGNERLYN 1040

Query: 965  GVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEME 1024
            G  G  L   IF GP YYQRL+H+ SDK   R  G +  + RQP +GR   GG+RFGEME
Sbjct: 1041 GHTGLPLDHLIFFGPTYYQRLKHLSSDKIHARPRGPLQPLVRQPTEGRAHEGGLRFGEME 1100

Query: 1025 RDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP 1084
            RD +L++GA+  L +RL   SDY+   VC++CG++  A                      
Sbjct: 1101 RDCMLSYGASQWLRERLFRVSDYYSVHVCNVCGTICAADTDQ------------------ 1142

Query: 1085 KKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGDG 1128
                C  C     +  V MPY  + L  EL  M++ I  +LG G
Sbjct: 1143 NVYKCQGCDNDSHIAQVLMPYACKLLFQEL--MSMAILPRLGTG 1184


>gi|393244464|gb|EJD51976.1| DNA-dependent RNA polymerase II second largest subunit [Auricularia
            delicata TFB-10046 SS5]
          Length = 1217

 Score =  346 bits (888), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 310/1163 (26%), Positives = 493/1163 (42%), Gaps = 191/1163 (16%)

Query: 51   ADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILN 110
             D ++Q  D       ++   G+ P+ML++  C L+    + L  L E   + GGYFI+N
Sbjct: 146  GDYDWQR-DPNESTTMQKIWIGKVPIMLRSSFCILKTLSDRDLYDLNECPYDQGGYFIIN 204

Query: 111  GLERVFRS----------VILPKQNYPMSM---VRSSFRDRREGYTDKAVVIRCVRKDQS 157
            G E+V  +          V    Q  P++    +RS+    + G T  +  ++   ++Q 
Sbjct: 205  GSEKVLIAQERMAANHVYVFAKAQPSPINFLAEIRSAVE--KGGKTISSFQVKMFHRNQE 262

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
              +         +++       ++  +P+ IV +AL   +D +I  H+  CYD       
Sbjct: 263  KTS-------GNTIKATIPYIKQD--IPIWIVFRALGVMSDRDILEHI--CYD------- 304

Query: 218  GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
              +    + E +K  + E     +  R Q L  IG   +    GL  E     A+ +++ 
Sbjct: 305  --MHDVTMLEMLKPCIDE--GFVIQEREQALSFIG--VRGTTTGLNKERRLRYAQEILQK 358

Query: 278  YIFVHLN----DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLK 333
             +  H++      + K   L +M+ +L          D+ D    + + L G L+    +
Sbjct: 359  EMLPHISMAEGSESKKAYFLGYMIHRLLLAALERRELDDRDHFGKKRLDLAGPLLASLFR 418

Query: 334  EKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLAT 393
                   +   + +Q  +E   +    FNL+   K      +  I   ++  L TG    
Sbjct: 419  MLFRKLTKDVYRYLQKCVEARKE----FNLSLAVK------ANTITNGLKYSLATGNWGD 468

Query: 394  QTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVH 453
            Q    +  +AG +    R  F   +S  R  +      G +    R+L    WG +CP  
Sbjct: 469  QKK-SMSAKAGVSQVLNRYTFASTLSHLRRTNTPLGREG-KIAKPRQLHNTHWGMVCPAE 526

Query: 454  TPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGP 513
            TP+G+ CGL+ ++     ++              +   ++  L   G+  SL +   SG 
Sbjct: 527  TPEGQACGLVKNLALMACIS-----------VGSLSAPVIEFLEEWGL-ESLEENAHSGV 574

Query: 514  PAVLSVLLDGRVVGV--IPSSEIEKVVAHLRRLKVS-AASVIPDDLEVGYVPLSLGGAYP 570
            P+   V ++G  +GV   P++ ++ +    R+  +S   SV+ D  E             
Sbjct: 575  PST-KVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRE------------K 621

Query: 571  GLYLFTSPPKFVRP---------------VRNISLPSEESQN------------IELI-G 602
             L L+T   +  RP               V  I    +ES              IEL+  
Sbjct: 622  ELRLYTDAGRVCRPLFIVEDQQLVIKKHHVEWIQNKEDESGAPYKWDNLIKTGVIELLDA 681

Query: 603  PFEQVFMEIRCPDGGDGGR---RNAFPATHE-EIHPTGMLSVVAN--------------- 643
              E+  M     D  +  R   R   P   + E  P   L  V N               
Sbjct: 682  EEEETVMICMTSDDLENSRLMSRGLAPRDADNEFDPAARLKSVVNAHTWTHCEIHPSMIL 741

Query: 644  -----LTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTY 698
                 + P+ DHNQSPRN YQ  M KQ MG  +   + R D     L  PQ P+  T + 
Sbjct: 742  GICASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFQVRQDTMANILYYPQKPLATTRSM 801

Query: 699  TKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNK 758
                  E P G NAIVA+L Y+GY+ ED++I+N+SS+DRG+    IY    +D+      
Sbjct: 802  EYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRS-IYYRSYMDVEKKSGM 860

Query: 759  VDRGQ-KLFRRNKDAKSLHSVIDS---DGLPYVGQ-------MIHPGEPYCSIYDKTTNS 807
            V   + +   R+   +  H   D    DGL   G        +I    P     ++    
Sbjct: 861  VALEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGTGVAGEDIIIGKTAPLPQDSEELGQR 920

Query: 808  WRTNSR-------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQ 860
             RT+ +       K +E+  VD V +    +++  +   IR R TR P IGDKF+SRHGQ
Sbjct: 921  TRTHQKRDVSTPLKSTENGIVDQVLI--TTNQDGQKFVKIRIRSTRVPQIGDKFASRHGQ 978

Query: 861  KGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDAT 920
            KG     +   DMPF+   G+ PD+IINPHA PSRMTI  L+E + +K  ++ G   DAT
Sbjct: 979  KGTIGITYRQEDMPFTA-EGVTPDIIINPHAIPSRMTIGHLVECLLSKVATMIGNEGDAT 1037

Query: 921  PFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPV 980
            PF +                 V+ + ++LR  G++  G+EV+Y G  G +L  ++++GP 
Sbjct: 1038 PFTDLT---------------VESVSQVLRQRGYHSRGLEVMYHGHTGRKLQAQVYLGPT 1082

Query: 981  YYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDR 1040
            YYQRL+HMV DK   R+ G +  +TRQP++GR R GG+RFGEMERD +++HG A  L +R
Sbjct: 1083 YYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGLAAFLKER 1142

Query: 1041 LHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMET 1100
            L   SD +   VC +CG    A                      +   C AC+    +  
Sbjct: 1143 LFDASDAYRLHVCDICGLTAIANL------------------KKQSFECRACKNKVAVSQ 1184

Query: 1101 VAMPYVFRYLAAELAAMNIKITL 1123
            + +PY  + L  EL +MNI   L
Sbjct: 1185 LYIPYAAKLLIQELQSMNIAARL 1207


>gi|295658889|ref|XP_002790004.1| DNA-directed RNA polymerase III subunit RPC2 [Paracoccidioides sp.
            'lutzii' Pb01]
 gi|226282087|gb|EEH37653.1| DNA-directed RNA polymerase III subunit RPC2 [Paracoccidioides sp.
            'lutzii' Pb01]
          Length = 1205

 Score =  346 bits (888), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 197/517 (38%), Positives = 276/517 (53%), Gaps = 59/517 (11%)

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH EI P  +L  VA L PY  HNQSPRN YQC M KQ +G        R D  LY +  
Sbjct: 723  THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYTMVY 782

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
            PQ P+V+T T      D  P G  A VAV++Y+GYD+EDA++LNK S+DRG    Q+++ 
Sbjct: 783  PQKPMVKTRTIELIKYDRLPAGQAATVAVMSYSGYDIEDALVLNKGSIDRGFGRCQVFRK 842

Query: 748  ETIDLSDDGNKV-DRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIY--DKT 804
             + +L    N   D+ +   R N      H+++D+DGL  VG+ ++ GE Y +    +  
Sbjct: 843  YSTNLKSYSNGTKDKLKGPDRENGLPVRKHALLDNDGLAAVGEKVNQGEVYINKVTPENA 902

Query: 805  TNSWRTNSRKGS--------------ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPII 850
             +S  T S  G               +  ++D V +    ++N  Q   ++ R TR P +
Sbjct: 903  LSSGITGSDAGRPITYIPSPQTYKLPDPSYIDKVMISSTEAEN--QLIKVQTRQTRRPEV 960

Query: 851  GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGG 910
            GDKFSSRHGQKGV   +    DMPFS + G+ PD+I+NPH FPSRMT+  +LE VA K G
Sbjct: 961  GDKFSSRHGQKGVVGIIAEQADMPFSDL-GIVPDIIMNPHGFPSRMTVGKMLELVAGKAG 1019

Query: 911  SLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTE 970
             L G+F   T F  S                V+E+  +L   GF+Y G + L SG+ G  
Sbjct: 1020 ILSGQFSYGTAFGGSP---------------VEEMSAILVKHGFSYGGKDCLTSGITGES 1064

Query: 971  LTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLA 1030
            L   +F+GP+YYQ+L+HMV DK   R+ G    +TRQP +GR R GG+R GEMERD L+A
Sbjct: 1065 LPAYVFMGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIA 1124

Query: 1031 HGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCH 1090
            +G + LL +RL   SD +  DVC  CG +  + +                        C 
Sbjct: 1125 YGTSQLLLERLMISSDQYEVDVCESCGFMGYSGW------------------------CQ 1160

Query: 1091 ACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
             C++S+G+  + +PY  + L  EL +MN+   L+L D
Sbjct: 1161 RCKSSRGVVKMIIPYAAKLLVQELFSMNVVARLKLAD 1197



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 111/453 (24%), Positives = 185/453 (40%), Gaps = 68/453 (15%)

Query: 36  DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
           + CR   ++Y   ++ D  F+Y+     V R     G+ PVML++ +C L      ++  
Sbjct: 160 NECRLRDMTYASPILVD--FEYVRGRQRVKRNGTAIGRMPVMLRSSKCVLSNKSEAEMQL 217

Query: 96  LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
           L+E   + GGYFI+NG E+    VIL ++    + V      ++E            RK 
Sbjct: 218 LQECPLDPGGYFIVNGTEK----VILVQEQLSKNRVIVETDLKKEIVQASVTSSSNERKS 273

Query: 156 QSSVTLK------LYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
           +S + LK       + +LN  V             P+ I+LKA+   +D E+   L    
Sbjct: 274 KSYIILKKERIYVRHNVLNEDV-------------PIVILLKAMGIQSDKEML-LLVAGI 319

Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHF----QPVIDGLQSE 265
           D  Y+            E   I   E   L + T+ Q L++IG       +P   G+   
Sbjct: 320 DSTYQ------------EDFAINFEEAVKLGIYTQHQALEYIGSRIKINRKPNNFGVIRR 367

Query: 266 SYYAVAETVIRDYIFVHLNDNNDKFN---LLIFMLQKLFSLVDHT-SVSDNPDSLQNQEI 321
           +Y   A   I   I  H+   N  F    L +  + +   +  H  S+ D+ D + N+ +
Sbjct: 368 NYVQEAIEAISSVIISHVVVENLNFRPKALYVAHMARRVLMAKHDPSLVDDRDYVGNKRL 427

Query: 322 LLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKK------FDFFNLANIKKVMEKNPS 375
            L G L+++      ED  +K +  I+  I+   KK      FD + +  I         
Sbjct: 428 ELAGQLLSLL----FEDLFKKFQFDIKMNIDKVLKKPVRTEQFDAYGVVAIH-------G 476

Query: 376 KQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
             I   +   + TG  + +      +RAG T    RL+++  +     +   + F   R 
Sbjct: 477 NHITQGMNRAISTGNWSLKRF--RMERAGVTHVLSRLSYIAALGMMTRI--SSQFEKTRK 532

Query: 436 TS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMT 467
            S  R L P  +G LCP  TP+GE CGL+ ++ 
Sbjct: 533 VSGPRALQPSQFGMLCPSDTPEGEACGLVKNLA 565


>gi|378727686|gb|EHY54145.1| DNA-directed RNA polymerase III subunit C2 [Exophiala dermatitidis
            NIH/UT8656]
          Length = 1225

 Score =  346 bits (888), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 207/522 (39%), Positives = 271/522 (51%), Gaps = 64/522 (12%)

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH EI P  +L  VA L PY  HNQSPRN YQC M KQ +GF       R D  LY +  
Sbjct: 736  THLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGFIANNQFLRIDTLLYLMVY 795

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
            PQ P+ +T T      D+ P G NA VAV++Y+GYD+EDA++LNK+SVDRG    Q+ + 
Sbjct: 796  PQKPLCKTRTIELVKYDKLPAGQNATVAVMSYSGYDIEDALVLNKASVDRGFGRCQVLRK 855

Query: 748  ETIDLSDDGNKV-DRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIY----- 801
              + L    N   D  +     N      H+++D DG+  VG  +  GE Y + Y     
Sbjct: 856  YPVSLKLYANGTKDTVEGPTMENGVPVKAHALLDEDGIASVGAKVSQGEVYVNKYVPENA 915

Query: 802  ------DKTTNSWRTNSRKGSESV------FVDYVAVDMKNSKNLPQKANIRFRHTRNPI 849
                  D  +NS  T+    ++        ++D V V    S N  Q   I+ R TR P 
Sbjct: 916  NSSGLSDTASNSLGTSLMPQAQKYRLPDPSYIDKVMVSEVESGN--QLIKIQTRQTRVPE 973

Query: 850  IGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKG 909
            +GDKFSSRHGQKGV   +   +DMPFS   G+ PD+I+NPH FPSRMT+  +LE VA K 
Sbjct: 974  VGDKFSSRHGQKGVVGIIAEQVDMPFSD-RGITPDIIMNPHGFPSRMTVGKMLELVAGKA 1032

Query: 910  GSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGT 969
            G L GKF   T F        G    D SK+L++         G++Y G + L SG+ G 
Sbjct: 1033 GILKGKFEYGTAFG-------GSKLADLSKALIE--------AGYSYDGKDYLTSGITGE 1077

Query: 970  ELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLL 1029
             L   +F+GP+YYQ+L+HMV DK   RS G    +TRQP +GR R GG+R GEMERD L+
Sbjct: 1078 PLPAYVFMGPIYYQKLKHMVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEMERDCLI 1137

Query: 1030 AHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTC 1089
            A+GA+ LL +RL   SD H  DVC  CG +    +                        C
Sbjct: 1138 AYGASQLLRERLMLSSDKHEVDVCESCGFMAFGRW------------------------C 1173

Query: 1090 HACQTS--KGMETVAM--PYVFRYLAAELAAMNIKITLQLGD 1127
              C T+   G   V M  PY F+ L  EL +MN+   L + D
Sbjct: 1174 QRCATAGESGSNVVRMTLPYAFKLLLNELGSMNVNTRLIVSD 1215



 Score = 97.4 bits (241), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 101/447 (22%), Positives = 187/447 (41%), Gaps = 56/447 (12%)

Query: 36  DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
           + CR   ++Y   ++ D+  +Y  +     R+    G+ P+ML++ RC L      ++ +
Sbjct: 173 NECRLRDMTYAAPILVDI--RYTKSKVAYRRKGMPIGRLPIMLRSSRCVLANKSEAEMCA 230

Query: 96  LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
           + E   + GGYFI+NG E+    VIL ++    + +      ++E  T         RK 
Sbjct: 231 MDECPLDPGGYFIVNGTEK----VILVQEQLSKNRIIVEADPKKELITASVTSSTHARKS 286

Query: 156 QSSVTLK---LYY---LLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
           +S + LK   LY    +LN  V             P+ ++LKA+  T+D+++   +    
Sbjct: 287 KSYIVLKKDMLYMRHNILNEDV-------------PICVLLKAMGVTSDMDMMAIV---- 329

Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHF----QPVIDGLQSE 265
                    A     + +   I   E   L + T+ Q L ++G       +P   G    
Sbjct: 330 ---------AGTDSTLQDDFAINFEETIKLGIHTQQQALDYLGARIKITRKPTPFGQSRR 380

Query: 266 SYYAVAETVIRDYIFVHLNDNNDKFN----LLIFMLQKLFSLVDHTSVSDNPDSLQNQEI 321
           +Y   A   + +    H+   N  F      +  M +++     + ++ D+ D + N+ +
Sbjct: 381 NYVQEALEAVSNVFIAHVPIENLNFRPKAIYVAHMARRVLMAKQNPALVDDRDYVGNKRL 440

Query: 322 LLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTS 381
            L G L+++      ED  +K    I+  ++   +K +   +A+   VM  + +  I   
Sbjct: 441 ELAGQLLSLL----FEDLFKKYNYDIKMNMDKVLRKPNRTEMADPCTVMMGH-ANHITQG 495

Query: 382 IETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRK 440
           +   + TG    +       RAG T    RL+F+  +     +   + F   R  S  R 
Sbjct: 496 MNRAIATGNWNLKRF--RMDRAGVTHLLSRLSFIASLGMMTRI--SSQFEKTRKVSGPRA 551

Query: 441 LLPESWGFLCPVHTPDGEPCGLLNHMT 467
           L P S+G LCP  TP+GE CGL+ ++ 
Sbjct: 552 LQPSSFGMLCPADTPEGEACGLVKNLA 578


>gi|261327712|emb|CBH10689.1| DNA-directed RNA polymerase II subunit 2,putative [Trypanosoma brucei
            gambiense DAL972]
          Length = 1189

 Score =  345 bits (886), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 312/1115 (27%), Positives = 492/1115 (44%), Gaps = 146/1115 (13%)

Query: 67   ERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNY 126
            +    G+ P+MLK+ RC+L   D ++L  L E   + GGYFI+NG E+V    ++ ++  
Sbjct: 166  QNMELGRIPIMLKSMRCNLLNKDEEELPRLNECPHDQGGYFIVNGTEKV----LIAQERQ 221

Query: 127  PMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLL---NGSVRLGFWLQGKEYL 183
              + V +  R +      K++V   + K ++   L  Y      +G   L   +   + L
Sbjct: 222  AANHVYAFTRPKGLLCEIKSIVEGSLNKPRTLQILMPYKKSGPGHGYENLLCRVAQMDEL 281

Query: 184  LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTT 243
            +P+ ++ +AL   +D EI    T   D K            + E ++  + +   L + T
Sbjct: 282  IPLFVLFRALDMGSDKEILQ--TVVPDLK---------DVAMLEMLRGSMEDASTLEIFT 330

Query: 244  RLQCLQHIGEHF--QPVIDGLQSESYYAVAETVIRD---YIFVHLNDNNDKFNLLIFMLQ 298
            R + L  IG+    Q   + LQ E+     + ++RD   ++ V    +  K   + +M+ 
Sbjct: 331  RDEALWFIGKRLGKQDSRENLQREA----QDLLMRDLLPHMGVDCAADRGKCLFIGYMVH 386

Query: 299  KLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKF 358
            +L  L        + D L ++ I + G L+T  L + L    R+  + + D   N G   
Sbjct: 387  RLLLLALGRREDTDRDFLGHKRIDVAGSLLTFQLNQFLVQVRREMAQTVHDYSTNRGGVV 446

Query: 359  DFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFI 418
             F  + +  +++     + + T     LK+G + T          G +    RL +   +
Sbjct: 447  SFGRILH-NRLITDGMRRCLATGNFGDLKSGNIKT----------GVSQTLNRLTYSSSL 495

Query: 419  SFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDS 478
            S  R +    S A  + T  R L    WG++CPV TP+G   GLL ++   C V+   D 
Sbjct: 496  SNLRRIQNPIS-ASSKATRPRNLHCTQWGYICPVETPEGGSIGLLKNLALMCLVSRGSDH 554

Query: 479  RGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV---------- 528
             G ++      T    +            L       V  V ++G ++GV          
Sbjct: 555  TGVVQAVQSRITGFHSI-----------ALSDLADVRVARVFVNGTLIGVHGDPERLLRD 603

Query: 529  ----IPSSEIEKVVAHLRRLKVSAASVIPDD---------LEVGYVPLSLGGAYPGLYLF 575
                    E+   V+ +R ++     V  D          +E   + L   G    +   
Sbjct: 604  LRARRRGGELSNEVSIVRDIRDREIRVFSDGGRCLRPLFVVEKSRIKLQKAG----IGEL 659

Query: 576  TSPPKFVRPVRNISLPSEESQN-IELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHP 634
              P   +   R IS      +  +ELI   E+  + I       G  +N F  +H E+ P
Sbjct: 660  LEPSTTLGGRREISWNKVMKKGYVELIDCEEEDSLLIAMVPSEVG--KNYF-YSHCEMDP 716

Query: 635  TGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVR 694
            + +L + A++ PY +HNQSPRN YQ  M KQ MG        R D   + L  PQ P+VR
Sbjct: 717  SMILGICASIIPYPNHNQSPRNTYQSAMGKQAMGIYASNFNMRMDTTAHVLFYPQKPLVR 776

Query: 695  TNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD 754
            T   +    ++ P G NAIVA+  Y+GY+ ED++I+++S+V+RG      +++       
Sbjct: 777  TKAMSYMRSNDLPAGHNAIVAIACYSGYNQEDSIIMSRSAVERGFFRSVFWRS----YKA 832

Query: 755  DGNKVDRGQKLFRRNKDAKSLH------SVIDSDGL-----PYVGQMIHPGEPYCSIYDK 803
               K   G+++F    D K  H      + +D+DGL     P +G  I  G+        
Sbjct: 833  SEEKKREGREMFE-IPDRKVCHVKRADYTKLDTDGLIKPGMPVIGGDIIVGKTIPVPKTL 891

Query: 804  TTNSWRTNSR----------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDK 853
            +  S  +++R          + +E   VD V +  +N  N   K  +R R  + P IGDK
Sbjct: 892  SEGSPVSDTRILKRDCSISSRAAEKGVVDRVML-TENKGNRFTK--VRIRTIKIPNIGDK 948

Query: 854  FSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLH 913
            F SRHGQKG     +   DMPF+   G+ PDLIINPHA PSRMT+A L+E++A K     
Sbjct: 949  FCSRHGQKGTNGIQFRQEDMPFNH-DGISPDLIINPHAIPSRMTVAHLIETLAGKVACYK 1007

Query: 914  GKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTC 973
            G  + ATPF + V               V++ G+ L     N +G E LY+G  G  L  
Sbjct: 1008 GGEVYATPFCSVV---------------VEDFGKALTQLKLNRYGNERLYNGHTGLPLDH 1052

Query: 974  EIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGA 1033
             IF GP YYQRL+H+ SDK   R  G +  + RQP +GR   GG+RFGEMERD +L++GA
Sbjct: 1053 LIFFGPTYYQRLKHLSSDKIHARPRGPLQPLVRQPTEGRAHEGGLRFGEMERDCMLSYGA 1112

Query: 1034 AYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQ 1093
            +  L +RL   SDY+   VC++CG++  A                          C  C 
Sbjct: 1113 SQWLRERLFRVSDYYSVHVCNMCGTICAADTDQ------------------NLYKCQGCD 1154

Query: 1094 TSKGMETVAMPYVFRYLAAELAAMNIKITLQLGDG 1128
                +  V MPY  + L  EL  M++ I  +LG G
Sbjct: 1155 NDSHISQVLMPYACKLLFQEL--MSMAILPRLGTG 1187


>gi|72388214|ref|XP_844531.1| DNA-directed RNA polymerase II subunit 2 [Trypanosoma brucei TREU927]
 gi|62359772|gb|AAX80202.1| DNA-directed RNA polymerase II subunit 2, putative [Trypanosoma
            brucei]
 gi|70801064|gb|AAZ10972.1| DNA-directed RNA polymerase II subunit 2, putative [Trypanosoma
            brucei brucei strain 927/4 GUTat10.1]
          Length = 1190

 Score =  345 bits (885), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 312/1115 (27%), Positives = 492/1115 (44%), Gaps = 146/1115 (13%)

Query: 67   ERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNY 126
            +    G+ P+MLK+ RC+L   D ++L  L E   + GGYFI+NG E+V    ++ ++  
Sbjct: 167  QNMELGRIPIMLKSMRCNLLNKDEEELPRLNECPHDQGGYFIVNGTEKV----LIAQERQ 222

Query: 127  PMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLL---NGSVRLGFWLQGKEYL 183
              + V +  R +      K++V   + K ++   L  Y      +G   L   +   + L
Sbjct: 223  AANHVYAFTRPKGLLCEIKSIVEGSLNKPRTLQILMPYKKSGPGHGYENLLCRVAQMDEL 282

Query: 184  LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTT 243
            +P+ ++ +AL   +D EI    T   D K            + E ++  + +   L + T
Sbjct: 283  IPLFVLFRALDMGSDKEILQ--TVVPDLK---------DVAMLEMLRGSMEDASTLEIFT 331

Query: 244  RLQCLQHIGEHF--QPVIDGLQSESYYAVAETVIRD---YIFVHLNDNNDKFNLLIFMLQ 298
            R + L  IG+    Q   + LQ E+     + ++RD   ++ V    +  K   + +M+ 
Sbjct: 332  RDEALWFIGKRLGKQDSRENLQREA----QDLLMRDLLPHMGVDCAADRGKCLFIGYMVH 387

Query: 299  KLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKF 358
            +L  L        + D L ++ I + G L+T  L + L    R+  + + D   N G   
Sbjct: 388  RLLLLALGRREDTDRDFLGHKRIDVAGSLLTFQLNQFLVQVRREMAQTVHDYSTNRGGVV 447

Query: 359  DFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFI 418
             F  + +  +++     + + T     LK+G + T          G +    RL +   +
Sbjct: 448  SFGRILH-NRLITDGMRRCLATGNFGDLKSGNIKT----------GVSQTLNRLTYSSSL 496

Query: 419  SFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDS 478
            S  R +    S A  + T  R L    WG++CPV TP+G   GLL ++   C V+   D 
Sbjct: 497  SNLRRIQNPIS-ASSKATRPRNLHCTQWGYICPVETPEGGSIGLLKNLALMCLVSRGSDH 555

Query: 479  RGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV---------- 528
             G ++      T    +            L       V  V ++G ++GV          
Sbjct: 556  TGVVQAVQSRITGFHSI-----------ALSDLADVRVARVFVNGTLIGVHGDPERLLRD 604

Query: 529  ----IPSSEIEKVVAHLRRLKVSAASVIPDD---------LEVGYVPLSLGGAYPGLYLF 575
                    E+   V+ +R ++     V  D          +E   + L   G    +   
Sbjct: 605  LRARRRGGELSNEVSIVRDIRDREIRVFSDGGRCLRPLFVVEKSRIKLQKAG----IGEL 660

Query: 576  TSPPKFVRPVRNISLPSEESQN-IELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHP 634
              P   +   R IS      +  +ELI   E+  + I       G  +N F  +H E+ P
Sbjct: 661  LEPSTTLGGRREISWNKVMKKGYVELIDCEEEDSLLIAMVPSEVG--KNYF-YSHCEMDP 717

Query: 635  TGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVR 694
            + +L + A++ PY +HNQSPRN YQ  M KQ MG        R D   + L  PQ P+VR
Sbjct: 718  SMILGICASIIPYPNHNQSPRNTYQSAMGKQAMGIYASNFNMRMDTTAHVLFYPQKPLVR 777

Query: 695  TNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD 754
            T   +    ++ P G NAIVA+  Y+GY+ ED++I+++S+V+RG      +++       
Sbjct: 778  TKAMSYMRSNDLPAGHNAIVAIACYSGYNQEDSIIMSRSAVERGFFRSVFWRS----YKA 833

Query: 755  DGNKVDRGQKLFRRNKDAKSLH------SVIDSDGL-----PYVGQMIHPGEPYCSIYDK 803
               K   G+++F    D K  H      + +D+DGL     P +G  I  G+        
Sbjct: 834  SEEKKREGREMFE-IPDRKVCHVKRADYTKLDTDGLIKPGMPVIGGDIIVGKTIPVPKTL 892

Query: 804  TTNSWRTNSR----------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDK 853
            +  S  +++R          + +E   VD V +  +N  N   K  +R R  + P IGDK
Sbjct: 893  SEESPVSDTRILKRDCSISSRAAEKGVVDRVML-TENKGNRFTK--VRIRTIKIPNIGDK 949

Query: 854  FSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLH 913
            F SRHGQKG     +   DMPF+   G+ PDLIINPHA PSRMT+A L+E++A K     
Sbjct: 950  FCSRHGQKGTNGIQFRQEDMPFNH-DGISPDLIINPHAIPSRMTVAHLIETLAGKVACYK 1008

Query: 914  GKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTC 973
            G  + ATPF + V               V++ G+ L     N +G E LY+G  G  L  
Sbjct: 1009 GGEVYATPFCSVV---------------VEDFGKALTQLKLNRYGNERLYNGHTGLPLDH 1053

Query: 974  EIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGA 1033
             IF GP YYQRL+H+ SDK   R  G +  + RQP +GR   GG+RFGEMERD +L++GA
Sbjct: 1054 LIFFGPTYYQRLKHLSSDKIHARPRGPLQPLVRQPTEGRAHEGGLRFGEMERDCMLSYGA 1113

Query: 1034 AYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQ 1093
            +  L +RL   SDY+   VC++CG++  A                          C  C 
Sbjct: 1114 SQWLRERLFRVSDYYSVHVCNMCGTICAADTDQ------------------NLYKCQGCD 1155

Query: 1094 TSKGMETVAMPYVFRYLAAELAAMNIKITLQLGDG 1128
                +  V MPY  + L  EL  M++ I  +LG G
Sbjct: 1156 NDSHISQVLMPYACKLLFQEL--MSMAILPRLGTG 1188


>gi|389860840|ref|YP_006363080.1| DNA-directed RNA polymerase subunit B' [Thermogladius cellulolyticus
            1633]
 gi|388525744|gb|AFK50942.1| DNA-directed RNA polymerase subunit B' [Thermogladius cellulolyticus
            1633]
          Length = 1151

 Score =  345 bits (885), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 316/1152 (27%), Positives = 519/1152 (45%), Gaps = 148/1152 (12%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
             CR   ++Y   + A V    +D       +       PVMLK+    L     ++L  +
Sbjct: 83   ECRLRNLTYAAPVTAKVAL--VDREGSHKEQDIKLMDLPVMLKSELDPLSKLSKEELKQV 140

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
             E+  + GGYFI+NG E+V    ++ +++   + +           T  A V+   +  +
Sbjct: 141  GEDPDDPGGYFIINGAEKV----LIAQEDLASNNIIVDISPEGSSTTHVAKVVSTAKGRR 196

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
            S + ++     +G     F  QG++  +P  I++ AL    + E+ N ++   D + +  
Sbjct: 197  SQLVIERRK--DGVFYANF--QGRK--IPAPILMIALGLATEYELMNAVSFDPDVQIQL- 249

Query: 217  KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID------------GLQS 264
                  P +SE V+ +L  ++     +  +  +   E+ + V++            G   
Sbjct: 250  -----LPSISE-VQSVLPRLEIPPGVSEEEIRRLEEEYRKKVVEEALDFIGARMAVGRPR 303

Query: 265  ESYYAVAETVIRDYIFVHLNDN---NDKFNLLIF---MLQKLFSLVDHTSVSDNPDSLQN 318
            E     AE  + +Y+  H+  +   + +    +F   M+ K+  +       D+ D  +N
Sbjct: 304  EERVRRAERALDEYLLPHIGTDPSPSTRLKKALFIGQMINKIIEVYLGRRQPDDKDHYRN 363

Query: 319  QEILLPGHLITIYLKEKLE-DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQ 377
            + + L G L+   L+  +   ++R+ K  I+       K +  +   ++K V++ N    
Sbjct: 364  KRLKLAGDLLATLLRHAIVVSFIREVKTSIE-------KTYSKYRKVDLKMVIKPN---- 412

Query: 378  IGTSIETMLKTGRL--ATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
                    + T R+  A  TG     R G +   +R N L  +S  R V    + A    
Sbjct: 413  --------IITDRISHAMATGNWPGGRTGVSQILDRTNMLSTLSHLRRVVSPLARAQPHF 464

Query: 436  TSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV 495
             + R+L   SWG +CP  TP+G   GL+ ++     ++  +D +   +   K+    L  
Sbjct: 465  EA-RELHFTSWGRMCPFETPEGANIGLVKNLALMAHISVGFDEKEVEQTLVKLGVKTLPQ 523

Query: 496  LIGVGMIPSLPKLVKSGPP--------AVLSVLLDGRVVGVIPSS-EIEKVVAHLRRL-- 544
            ++       L + +K G          +   V L+GR++G+ P   E+ + +  LRR   
Sbjct: 524  ILD-----ELKESIKRGEAYSGTAEYSSWSKVYLNGRLIGLYPDGGELARKIRELRRQGK 578

Query: 545  ---KVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTS-----PPKFVRPVRNISLPSEESQ 596
               +V+ A    + L   YV    G     L +  +      P+ ++ ++N +L  E+  
Sbjct: 579  ISSEVNVAYFRTEYLNEVYVNCDAGRIRRPLLVVENGELKLKPEHIKQLKNGNLKFEDLV 638

Query: 597  N---IELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQ 652
                IE + P E+    I   PD        +   TH EI    +L +VA++ PY +HNQ
Sbjct: 639  KRGVIEYLDPDEEENAYIALNPD------ELSIEHTHLEIWVPSILGIVASIIPYPEHNQ 692

Query: 653  SPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNA 712
            SPRN+Y+  M KQ++G      + R D + + L  PQ P+ +T      G +E P G N 
Sbjct: 693  SPRNIYEAAMGKQSLGLYAANFQRRMDSRGHFLHYPQKPLAQTKPLEVIGYNEKPAGQNM 752

Query: 713  IVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVDR---GQKLFRR 768
            +VAVL YTGY++EDA+I+NKSS++RG+     ++   T++    G + D+        R 
Sbjct: 753  VVAVLTYTGYNIEDAVIMNKSSIERGLGRSTFFRVYSTVEYKYPGGQEDKISVPPSDIRG 812

Query: 769  NKDAKSLHSVIDSDGLP-----YVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESV---- 819
             K  ++ +  +D DG+       VG  +  G+   S +  T     +   K   SV    
Sbjct: 813  YKGPRA-YEKLDEDGIVAPETYVVGGDVLIGKVSPSRFMITQELTGSEQVKQDTSVVMRH 871

Query: 820  ----FVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPF 875
                 VD V +   +  N  +   +R R  R P +GDKF+SRHGQKGV   + P  DMPF
Sbjct: 872  EEKGIVDVVMITTDSDGN--KLVKVRVRDLRIPELGDKFASRHGQKGVVGLIIPQYDMPF 929

Query: 876  SGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGT 935
            +   G+ PDLIINPHAFPSRMT+  L+ES+A K  +L G+ +D TPF             
Sbjct: 930  TE-DGITPDLIINPHAFPSRMTVGQLIESIAGKVAALEGRLVDGTPFFKE---------- 978

Query: 936  DESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQV 995
            D  K +V     +L+  G+   G E +Y G  G  +   +FIG VYYQ+L HMVSDK   
Sbjct: 979  DPEKLMV-----VLKRHGYPETGEEAMYDGRTGELMRAPVFIGIVYYQKLHHMVSDKIHA 1033

Query: 996  RSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSL 1055
            R+ G +  +TRQP +GR R GG+R+GEME D L+ HGAA LL + +   SD  V  VC L
Sbjct: 1034 RARGPVQILTRQPTEGRARAGGLRWGEMEVDCLVGHGAASLLKETMIDRSDKAVIYVCEL 1093

Query: 1056 CGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELA 1115
            CG +     I                    +  C   +    ++ V + Y F+ L  EL 
Sbjct: 1094 CGHIGYYDRIR------------------DRYVCPVHKEKGVLKPVEVSYSFKLLIQELM 1135

Query: 1116 AMNIKITLQLGD 1127
            +M I   L+L D
Sbjct: 1136 SMAIMPRLKLED 1147


>gi|395334467|gb|EJF66843.1| DNA-dependent RNA polymerase II second largest subunit [Dichomitus
            squalens LYAD-421 SS1]
          Length = 1222

 Score =  344 bits (883), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 308/1135 (27%), Positives = 494/1135 (43%), Gaps = 175/1135 (15%)

Query: 71   FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSM 130
             G+ P+ML++  C L     ++L  L E   + GGYFI+NG E+    V++ ++    + 
Sbjct: 171  IGKVPIMLRSTYCILHELGDKELFDLNECPYDSGGYFIINGSEK----VLIAQERMATNH 226

Query: 131  VRSSFRDRREGYTDKAVVIRCVRKDQSSVT---LKLYYLLNGSVRLGFWLQGK-EYL--- 183
            V    + +    +  A +   V K   +++   +KLY+  +    LG  ++    Y+   
Sbjct: 227  VYVFAKAQPSPISFLAEIRSAVEKGGKTISQFQVKLYH-RSQERSLGNVMKATIPYIKVD 285

Query: 184  LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTT 243
            +P+ +V +AL   +D +I  H+  CYD +   +   +  P + E   I   E+       
Sbjct: 286  IPIWVVFRALGVISDRDILEHI--CYDMQ-DNQMLEMLKPCIDEGFVIQDREI------- 335

Query: 244  RLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLN----DNNDKFNLLIFMLQK 299
                L +IG   +    GL  E     A+ +++  +  H++      + K     +M+ +
Sbjct: 336  ---ALDYIGN--RGTTTGLNRERRLRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHR 390

Query: 300  LFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFD 359
            L          D+ D    + + L G L+    +       +   + +Q  +E + K+F 
Sbjct: 391  LLLAALERRDLDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETH-KEF- 448

Query: 360  FFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFIS 419
                 NI   ++ N    I   ++  L TG    Q    +  +AG +    R  +   +S
Sbjct: 449  -----NISLAVKHN---TITNGLKYSLATGNWGDQKK-SMSSKAGVSQVLNRYTYASTLS 499

Query: 420  FFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSR 479
              R  +      G +    R+L    WG +CP  TP+G+ CGL+ +++    ++      
Sbjct: 500  HLRRCNTPLGREG-KIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCIS------ 552

Query: 480  GNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVA 539
                    +   ++  L   G+  SL +   +  P    V ++G  +GV    +  K+V+
Sbjct: 553  -----VGTLSAPVIEFLEEWGL-ESLEENAHASTPCT-KVFVNGVWMGV--HRDPVKLVS 603

Query: 540  HLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP---VRNISLPSEESQ 596
             LR+L+        DD+    V +        L L+T   +  RP   V N  L  ++  
Sbjct: 604  TLRKLRRK------DDINCE-VSVVRDIRERELRLYTDAGRVCRPLFIVENQQLLIQKKH 656

Query: 597  ------------------------NIELI-GPFEQVFMEIRCPDGGDGGRRNAF---PAT 628
                                     IEL+    E+  M    P+  +  R  A    P  
Sbjct: 657  IESLVRAKDDPTFNYNWDSLLKDGVIELLDAEEEETVMICMTPEDLENSRLQAAGIDPHA 716

Query: 629  HEEIHPTG--------------------MLSVVANLTPYSDHNQSPRNMYQCQMAKQTMG 668
             EE  P+                     +L V A++ P+ DHNQSPRN YQ  M KQ MG
Sbjct: 717  DEEEDPSARLKAPTSAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 776

Query: 669  FSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAM 728
              +     R D     L  PQ P+  T +       E P G NAIVA+L Y+GY+ ED++
Sbjct: 777  IFLTNFLIRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAIVAILCYSGYNQEDSV 836

Query: 729  ILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAK-----SLHSVIDSDG 783
            I+N+SS+DRG+    IY    +DL +  + V + ++  +  +D         +  ++ DG
Sbjct: 837  IMNQSSIDRGLFRS-IYYRSYMDL-EKKSGVQQLEEFEKPTRDTTLRMKHGTYDKLEDDG 894

Query: 784  LPYVGQ-------MIHPGEPYCSIYDKTTNSWRTNSR-------KGSESVFVDYVAVDMK 829
            L   G        +I    P     ++     RT+++       K +E   VD V +   
Sbjct: 895  LIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRTHTKRDVSTPLKSTEQGIVDQVLI-TT 953

Query: 830  NSKNLPQK-ANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIIN 888
            N++   QK   IR R TR P IGDKF+SRHGQKG     +   DMPF+   G+ PD+IIN
Sbjct: 954  NAEG--QKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTA-EGITPDIIIN 1010

Query: 889  PHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEM 948
            PHA PSRMTI  L+E + +K  +L G   DATPF +                 V+ + + 
Sbjct: 1011 PHAIPSRMTIGHLVECLLSKLATLIGNEGDATPFTDLT---------------VESVSQY 1055

Query: 949  LRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQP 1008
            LR  G+   G+EV+Y G  G +L  ++++GP YYQRL+HMV DK   R+ G +  +TRQP
Sbjct: 1056 LRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQP 1115

Query: 1009 IKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQ 1068
            ++GR R GG+RFGEMERD +++HG A  L +RL   SD +   VC +CG    A      
Sbjct: 1116 VEGRSRDGGLRFGEMERDCMISHGVAAFLKERLFEASDAYRLHVCDICGLTAIANL---- 1171

Query: 1069 KRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITL 1123
                            +   C AC+       + +PY  + L  EL +MNI   L
Sbjct: 1172 --------------KKQTFECRACKNKTACSQIYIPYAAKLLFQELQSMNIAARL 1212


>gi|348551951|ref|XP_003461792.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Cavia
            porcellus]
          Length = 1102

 Score =  344 bits (882), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 305/1136 (26%), Positives = 497/1136 (43%), Gaps = 186/1136 (16%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
             CR   ++Y+  +  D+E  Y      ++R     G+ P+ML++  C L G    +   L
Sbjct: 101  ECRLRDMTYSAPITVDIE--YTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKL 158

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC-VRKD 155
             E   + GGYFI+ G+E+V   +++ +Q   +S  R      R+G    +V      +K 
Sbjct: 159  NECPLDPGGYFIVKGVEKV---ILIQEQ---LSKNRIIVEADRKGAVGASVTSSTHEKKS 212

Query: 156  QSSVTLKLYYLLNGSVRLGFWLQGKEYL--------LPVGIVLKALVDTNDLEIFNHLTC 207
            ++S+ +K               QG+ YL        +P+ I+ KA+   +D EI   +  
Sbjct: 213  RTSMAVK---------------QGRFYLRHNTLSEDIPIAIIFKAMGVESDQEIVQMIG- 256

Query: 208  CYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHF--QPVIDGLQSE 265
                  ++   A G  L          E Q   + T++Q L++IG     Q +  G   +
Sbjct: 257  ----TEERVMAAFGPSL---------EECQKSQIFTQMQALKYIGNKVRRQRMWGGGPKK 303

Query: 266  SYYAVAETVIRDYIFVHLNDNNDKFN---LLIFMLQKLFSLVDHTSVSDNPDSLQNQEIL 322
            +    A  ++   I  H+      F    +   ++ +   L    +  D+ D   N+ + 
Sbjct: 304  TKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGDNKVDDRDYYGNKRLE 363

Query: 323  LPGHLITIYLKEKLEDWLRKGKKLIQDEI-ENNGKKFDFFNLANIKKVMEKNPSKQIGTS 381
            L G L+++  ++  + +  + KK+    I +    +FD         V++     QI   
Sbjct: 364  LAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFD---------VVKHMRQDQITNG 414

Query: 382  IETMLKTGRLATQT-GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VR 439
            +   + TG  + +   +D   R G T    RL+++  +     +   + F   R  S  R
Sbjct: 415  MVNAISTGNWSLKRFKMD---RQGVTQVLSRLSYISALGMMTRI--SSQFEKTRKVSGPR 469

Query: 440  KLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGV 499
             L P  WG LCP  TP+GE CGL+ ++     + +  +    ++  S +    +  L G 
Sbjct: 470  SLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNFLCGE 529

Query: 500  GMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVG 559
             +            P V  V L+G ++GVI   + +K+V   R ++   A  I +     
Sbjct: 530  EL----------SYPNVFLVFLNGNILGVI--RDHQKLVHTFRLMR--RAGYINE----- 570

Query: 560  YVPLSLGGAYPGLYLFTSPPKFVRP--VRNISLPSEESQNIELIGP----FEQVFMEIRC 613
            +V +S       +Y+ +   +  RP  +     P+  ++++E +      FE  F+    
Sbjct: 571  FVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFED-FLHESL 629

Query: 614  PDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQA 673
             +  D    N       E     MLS V     + + N+             T+G++ + 
Sbjct: 630  VEYLDVNEENDCNIALYEHTVNKMLSFV-----FPNINEG------------TIGYNQRN 672

Query: 674  LKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKS 733
               R D  +Y L  PQ P+V+T T      ++ P G NA VAV++Y+GYD+EDA++LNK+
Sbjct: 673  ---RIDTLMYLLAYPQKPMVKTKTIELIDFEKLPAGQNATVAVMSYSGYDIEDALVLNKA 729

Query: 734  SVDRGMCHGQIYQTETIDLSDDGNKV-DR--GQKLFRRNKDAKSLHSVIDSDGLPYVGQM 790
            S+DRG     +Y+     L    N+  D+  G  L    +     H ++D+DG+      
Sbjct: 730  SLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAATRKPIWRHEILDADGI------ 783

Query: 791  IHPGEPYCSIYDKTTNSWRTNSR---------------------KGSESVFVDYVAVDMK 829
              PGE   +       S  T ++                     KG+   +++ V +   
Sbjct: 784  CSPGEKVANKQVLVNKSMPTVTQIPLEGSGAAQQPQYKDVPITYKGATDSYIEKVMISSN 843

Query: 830  NSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINP 889
                   K  +  R TR P IGDKFSSRHGQKGVC  + P  DMPF   +G+ PD+I+NP
Sbjct: 844  AEDAFLIK--MLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCD-SGICPDIIMNP 900

Query: 890  HAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEML 949
            H FPSRMT+  L+E +A K G L G+F   T F  S                V ++ E L
Sbjct: 901  HGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSK---------------VKDVCEDL 945

Query: 950  RTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPI 1009
               G+NY G + + SG+ G  L   I+ GPVYYQ+L+HMV DK   R+ G    +TRQP 
Sbjct: 946  VRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPT 1005

Query: 1010 KGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQK 1069
            +GR R GG+R GEMERD L+ +GA+ LL +RL   SD    DVC  CG +  + +     
Sbjct: 1006 EGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLGYSGW----- 1060

Query: 1070 RAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
                               CH C++S  + ++ +PY  + L  EL +MNI   L+L
Sbjct: 1061 -------------------CHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLRL 1097


>gi|356509878|ref|XP_003523670.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Glycine
            max]
          Length = 1205

 Score =  344 bits (882), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 310/1108 (27%), Positives = 500/1108 (45%), Gaps = 160/1108 (14%)

Query: 71   FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVF---RSVILPK---Q 124
             G+ PVM+K+  C ++ A+        ++  + GGYFI+ G E+ F     + L +    
Sbjct: 200  IGRLPVMVKSDLCWMKDAEKD------DDEFDHGGYFIVKGAEKTFIAQEQLYLKRLWVM 253

Query: 125  NYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLL 184
            N P  M+    + +R       +VI+ V   +S        + NG + L  +    E  +
Sbjct: 254  NSPGWMIAYKSQMKR-----NRMVIKLVGNSRSE------EVENGDMCLTVYFLSVE--V 300

Query: 185  PVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVK-IILAEVQDLSLTT 243
            PV ++  AL  ++D EI + + C  D+                R++ I+ A V+D     
Sbjct: 301  PVWVLFFALGVSSDKEIVDLIGCGNDDV---------------RIQNILFASVRDADEKC 345

Query: 244  -RLQCLQHIGEHFQPVIDGLQ---SESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQK 299
               + +++  ++ +  +  +Q   SES     E     Y+F  ++  N K   L +M++ 
Sbjct: 346  GAFRRVRNAVQYLEKCVKSVQFPPSESMQECLEM----YVFPGISGLNRKARFLAYMVKG 401

Query: 300  LFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFD 359
            L          DN D  +N+ + L   L+   LK  +    ++  K +Q          D
Sbjct: 402  LLLAYTGRRKCDNRDDFRNKRLELASELLDRELKVHVAHARKRMAKALQR---------D 452

Query: 360  FFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFIS 419
             +   +++ +     +  I   ++    TG   +     +++ +G      R N L+ ++
Sbjct: 453  LYGDRDVRPIEHYLDASIITNGLQRAFSTGAW-SHPYKRMERISGVVANVGRTNPLQTMA 511

Query: 420  FFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSR 479
              R   +   + G +    R   P  WG +C + TPDGE CGL+ +++ T  V++     
Sbjct: 512  ELRRARQQVQYTG-KVGDARYPHPSHWGKVCFLTTPDGENCGLVKNLSVTGLVST----- 565

Query: 480  GNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVA 539
                D + +  SIL  L+  GM   L     +   ++  VLL+G  VGV P S     VA
Sbjct: 566  ----DVTDVTESILLKLVDCGM-QELVDDTSTHLGSMDKVLLNGDWVGVCPDSS--SFVA 618

Query: 540  HLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP---------VRNISL 590
             LR  +    + +P  +E+         +   + +++   + +RP         ++    
Sbjct: 619  ELRSRR--RRNELPHQVEI-----KRDQSQHEVRIYSDAGRILRPLLVVGNLLKIKGFKS 671

Query: 591  PSEESQN------IELIGPFEQVFMEIRCPDGG------DGGRRNAFPATHEEIHPTGML 638
                 Q+      IELIGP E+   E  C   G        G+R+    TH E+  + +L
Sbjct: 672  DRYSFQSLLDKGVIELIGPEEE---EDCCTAWGVEYLFGKEGKRSV-KYTHCELDMSFLL 727

Query: 639  SVVANLTPYSDHNQSPRNMYQCQM-AKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNT 697
             +  +L P+++H+ + R +YQ Q  + Q +GFS      R D   + L  PQ P+ RT T
Sbjct: 728  GLSCSLVPFANHDHARRVLYQSQKHSSQAIGFSTTNPNIRVDTLSHQLHYPQKPLFRTMT 787

Query: 698  YTKYGI-------------DEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMC---H 741
                G               E+  G NAIVAV  + GY+ ED++++N++S+ RGM    H
Sbjct: 788  SDCLGKPDHSLGQSKIPPKAEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLQRGMFRSEH 847

Query: 742  GQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSV--IDSDGLPYVGQMIHPGEPYCS 799
             + Y++E ID  +  +K  + + +    K    +  V  +D DG PYVG  +  G+    
Sbjct: 848  IRSYKSE-IDNKESSDKKRKPEDIVNFAKLQSKIGRVDSLDDDGFPYVGANLQSGD---I 903

Query: 800  IYDKTTNSWRTNS--RKGSESVFVDYVAVDMKNS-KNLPQKANIRFRHTRNPIIGDKFSS 856
            I  K   S   NS   K +E  +V  V +   +  KN    A +  R  R+P++GDKFSS
Sbjct: 904  IIGKCAESGADNSVKLKHTERGYVQKVVLSSNDEGKNF---AVVSLRQVRSPVLGDKFSS 960

Query: 857  RHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKF 916
             HGQKGV   L    + PF+   G+ PD++INPHAFPSR T   LLE+   KG +  G  
Sbjct: 961  MHGQKGVLGFLESQENFPFTR-QGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGIL 1019

Query: 917  MDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIF 976
              ATPF               S   VD + E L   GF+  G E +Y+G  G  +   IF
Sbjct: 1020 KQATPF---------------STPSVDAITEQLHRAGFSRWGNERVYNGRTGEMVRSLIF 1064

Query: 977  IGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYL 1036
            +GP +YQRL HM  DK + R+TG +  +TRQP+  RKR GGI+FGEMERD L+AHGA+  
Sbjct: 1065 MGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASAN 1124

Query: 1037 LHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSK 1096
            L++RL T SD     +CS C  V            +R + G    R P    C  C+++ 
Sbjct: 1125 LYERLFTLSDSSQIHICSKCKKVANVI--------LRPVSGGRKIRGP---YCRHCESAD 1173

Query: 1097 GMETVAMPYVFRYLAAELAAMNIKITLQ 1124
             +    +PY  + L  EL +M I +  +
Sbjct: 1174 DIVVAHVPYGAKLLCQELFSMGINLKFE 1201


>gi|347835281|emb|CCD49853.1| similar to DNA-directed rna polymerase III subunit [Botryotinia
            fuckeliana]
          Length = 1213

 Score =  344 bits (882), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 193/516 (37%), Positives = 278/516 (53%), Gaps = 58/516 (11%)

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH EI P  +L  VA L PY  HNQSPRN YQC M KQ +G        R D  LY +  
Sbjct: 730  THLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFSRIDTLLYLMVY 789

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
            PQ P+V+T T      D+ P G NA VAV++++GYD+EDA++LNK+S DRG    Q+++ 
Sbjct: 790  PQQPMVKTRTIELIKYDKLPAGQNATVAVMSFSGYDIEDALVLNKASCDRGFGRCQVFRK 849

Query: 748  ETIDLSDDGNKV-DR-GQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTT 805
             +  L    N+  DR   ++   N    + H ++ +DG+  VG+ I+ GE Y +    + 
Sbjct: 850  YSTQLKKYPNRSQDRIADRVIGENGKPIAKHRILGTDGIALVGERINAGEVYLNKESPSN 909

Query: 806  -------NSWRTNSRKGS-------ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIG 851
                   N +  N  K +       +  ++D V   +  ++N      ++ R TR P +G
Sbjct: 910  PNSTGMGNDFNLNDMKPAPMGYKLHDHAYIDKVM--LSQTENESGVLKVQTRQTRRPELG 967

Query: 852  DKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGS 911
            DKFSSRHGQKGV   +    DMPF+  +G+ PD+I+NPH FPSRMT+  +LE ++ K G 
Sbjct: 968  DKFSSRHGQKGVVGIIVNQEDMPFAD-SGVTPDIIMNPHGFPSRMTVGKMLELLSGKAGV 1026

Query: 912  LHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTEL 971
            ++G     T F  S                VD +G++L   GF+Y G + + SG+ G  L
Sbjct: 1027 INGSLEYGTCFGGSN---------------VDVMGQILIDNGFSYSGKDFVTSGITGESL 1071

Query: 972  TCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAH 1031
               +F GP+YYQ+L+HMV DK   RS G    +TRQP +GR R GG+R GEMERD L+A+
Sbjct: 1072 PAYVFFGPIYYQKLKHMVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAY 1131

Query: 1032 GAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHA 1091
            GA+ LL +RL   SD H  D+C  CG +  + +                        C  
Sbjct: 1132 GASQLLLERLMLSSDAHQVDICETCGLMGYSGW------------------------CQT 1167

Query: 1092 CQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
            C++SKG+ T+ MPY  + L  E+ +MN+ + L+L D
Sbjct: 1168 CKSSKGVSTMTMPYAAKLLVQEMLSMNVLVRLKLED 1203



 Score =  114 bits (286), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 110/460 (23%), Positives = 202/460 (43%), Gaps = 60/460 (13%)

Query: 36  DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
           + CR   ++Y   +  D+  +Y+   + V R+    G+ P+MLK+ +C L G + +++  
Sbjct: 165 NECRLRDMTYAAPIRVDI--KYMRGRTIVARKNIAIGRMPIMLKSSKCRLAGKNDRQMAH 222

Query: 96  LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC-VRK 154
           + E A + GGYF++NG E+V   +++ +Q     ++  +  D ++G    +V      RK
Sbjct: 223 MNECALDPGGYFVVNGTEKV---ILVQEQLSKNRVIIEA--DPKKGIVSASVTSSTHERK 277

Query: 155 DQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYK 214
            +S V LK         R+          LP+ IVLKA+   +D E+   L    DE+Y+
Sbjct: 278 SKSYVMLK-------KERISLQHNILTEALPIVIVLKAMGIQSDHELL-LLVAGSDERYQ 329

Query: 215 KEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ------PVIDGLQSESYY 268
            E              +   E   L + T+ Q L++IG   +          G +S SY 
Sbjct: 330 DE------------FSVNFEEATKLGVHTQHQALEYIGSRVKMGSRARAPGGGPRSRSYV 377

Query: 269 AVAETVIRDYIFVHLN----DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLP 324
             A   + + I  H+     D   K   + FM++++   + + ++ D+ D + N+ + L 
Sbjct: 378 NDALEALANIIITHVPVVGLDFRPKALYICFMVRRVLMAMVNPTLVDDRDYVGNKRLELA 437

Query: 325 GHLITIYLKEKLEDWLRKGKKLIQDEIE------NNGKKFDFFNLANIKKVMEKNPSKQI 378
           G L+++      ED  +K    ++  I+      N G +FD +N         ++    I
Sbjct: 438 GQLLSLL----FEDLFKKFNTDLKMNIDKVLKKPNRGMEFDAYNHM-------QSHGNYI 486

Query: 379 GTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS- 437
              +   + TG  + +      +RAG T    RL+++  +     +   + F   R  S 
Sbjct: 487 TIGMNRAISTGNWSLKRF--KMERAGVTHVLSRLSYISALGMMTRI--SSQFEKTRKVSG 542

Query: 438 VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYD 477
            R L P  +G LC   TP+GE CGL+ ++     + +Y D
Sbjct: 543 PRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTYDD 582


>gi|353234760|emb|CCA66782.1| probable DNA-directed RNA polymerase III, 130 KD subunit
            [Piriformospora indica DSM 11827]
          Length = 1118

 Score =  343 bits (881), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 320/1212 (26%), Positives = 526/1212 (43%), Gaps = 221/1212 (18%)

Query: 9    FEPLRELVRHHIESFDYMLDEGL-------------------------------SEMFD- 36
            F  ++ LV+ HI+SF+Y +D  L                               SE  D 
Sbjct: 37   FLKVKGLVKQHIDSFNYFVDYDLRAIMEANCKVTSDVDPRFHFLFTDIRVGTPVSEQADF 96

Query: 37   ----------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQ 86
                       CR    +Y+  LM D+E  Y+     + R+    G+ P+ML++ +C L 
Sbjct: 97   ANQRQPITPHQCRLRDATYSAPLMVDIE--YIRDNKRIQRKDVVIGRIPIMLRSNKCVLA 154

Query: 87   GADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKA 146
            GA+  +L  + E   + GGYF++ G E+V    IL ++        S  R   E  + K+
Sbjct: 155  GANESQLAVMNECPLDPGGYFVVKGTEKV----ILVQEQL------SKNRIIVEIDSAKS 204

Query: 147  VVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---LPVGIVLKALVDTNDLEIFN 203
            ++   V     S      Y+   ++R G  +         +P+ I LKAL   +D EI  
Sbjct: 205  IISASVTSSTHSGLKSKTYV---NMRKGLIVLKHNSFSEDIPIVIALKALGVQSDKEIL- 260

Query: 204  HLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLS--LTTRLQCLQHIGEHFQPVIDG 261
             L C  + +  +E     SP + E  +  +  +Q     L  R++ ++ +    +P    
Sbjct: 261  -LLCAGNTESYQE---AFSPNLEESSRAGVYTIQQAREWLGARVRSMRRMVGPRRP---- 312

Query: 262  LQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEI 321
               E        ++  ++ V   D + K   +  M +++    +   + D+ D + N+ +
Sbjct: 313  -NWEEGLECLVMIVLTHVPVVNMDLSAKAIYVATMTRRVLMAHEDPKLVDDRDYVGNKRL 371

Query: 322  LLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTS 381
             L G L+ +  ++  + ++ + KK   D++     +   F+  +   ++  NP  Q    
Sbjct: 372  ELAGQLLALLFEDLFKAYVSELKKAF-DKVLGKPARTSAFD-PHTTMLLHGNPITQ---G 426

Query: 382  IETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRK 440
                + TG  + +      +RAG T    RL+++  +     +   + F   R  S  R 
Sbjct: 427  FIRAISTGNWSLKRFR--MERAGVTHVLSRLSYISALGMMTRI--SSQFEKTRKVSGPRA 482

Query: 441  LLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVG 500
            L P  WG LCP  TP+GE CGL+ ++     + +  + +  ++  + +    +++  G  
Sbjct: 483  LQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVEEKPLVKIITLLGVEDIQLSTGSE 542

Query: 501  MIPSLPKLVKSGPPAVLSVLLDGRVVGV--IPSSEIEKVVAHLRRLKVSAASVIPDDLEV 558
            +          GP + + V L+G ++G+   PS    + VA  R+L+   A  I +    
Sbjct: 543  IY---------GPTSFV-VHLNGLIIGLTRFPS----RFVAQFRKLR--RAGRINE---- 582

Query: 559  GYVPLSLGGAYPGLYLFTSPPKFVRPVRNIS--LPSEESQNIELIG----PFEQVFME-- 610
             +V + +   +  + + +   +  RP+  +    P   +++I+++      FE    +  
Sbjct: 583  -FVGIYINHHHKTVNIASDGGRICRPLIIVERMQPKVTNEHIQMLKLGKLAFEDFLHQGL 641

Query: 611  ---IRCPDGGDGG----RRNAFPAT-HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQM 662
               +   +  D       ++  P+T H EI P  +L  VA L PY  HNQSPRN YQC M
Sbjct: 642  VEYVDVNEENDSHIALYEKDIEPSTTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAM 701

Query: 663  AKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGY 722
             KQ +G        R D  LY L  PQ P+V+T T    G D+ P G NA VA+++Y+GY
Sbjct: 702  GKQAIGAIAYNQLNRIDTLLYLLVYPQQPMVKTKTIELVGYDKLPAGQNATVAIMSYSGY 761

Query: 723  DMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGN----------KVDRGQKLFRRNKDA 772
            D+EDA+ILN++S++RG    Q+++  T  +    N          KV   +KL +R    
Sbjct: 762  DIEDALILNRASIERGYGRCQVFRKNTAIIRKYPNGTYDRLVAPSKVGTEEKLPKR---- 817

Query: 773  KSLHSVIDSDGLPYVGQMIHPGEPYC---SIYDKTTNSWRTN-----------SRKGSES 818
               + ++D DGL   G+ + P + Y    S  D  TNS   N           + K   +
Sbjct: 818  ---YEILDDDGLARPGERVDPDDVYVNKQSPKDTVTNSLTVNPAQVEYRPTPLTYKTKVA 874

Query: 819  VFVDYVAV-DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
             ++D V + D  N + L     +  R TR P +GDKFSSRHGQKGV   + P  DMPF+ 
Sbjct: 875  GYIDRVMITDTDNDQAL---VKVLIRQTRIPELGDKFSSRHGQKGVVGLIVPQEDMPFND 931

Query: 878  VTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDE 937
              G+ PD I+NPH FPSRMT+  ++E +A K G L G     T F  S            
Sbjct: 932  -QGICPDSIMNPHGFPSRMTVGKMIELLAGKAGVLRGTLEYGTAFGGSK----------- 979

Query: 938  SKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRS 997
                V+++ ++L   GF+Y G ++L SG+ G  L                          
Sbjct: 980  ----VEDMSKILIEHGFSYSGKDMLTSGITGEPL-------------------------E 1010

Query: 998  TGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCG 1057
             G    +TRQP +GR R GG+R GEMERD L+ +GA  LL +RL   SD      C  CG
Sbjct: 1011 AGPRAILTRQPTEGRSRDGGLRLGEMERDCLVGYGATQLLLERLMISSDQFQVHACQTCG 1070

Query: 1058 SVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAM 1117
             +    +                        C  C++SK M  + +PY  + L  EL +M
Sbjct: 1071 LMGYNGW------------------------CPYCKSSKKMAQLTIPYAAKLLFQELISM 1106

Query: 1118 NIKITLQLGDGA 1129
            N+   L + D A
Sbjct: 1107 NVVPRLIMDDAA 1118


>gi|156059482|ref|XP_001595664.1| hypothetical protein SS1G_03753 [Sclerotinia sclerotiorum 1980]
 gi|154701540|gb|EDO01279.1| hypothetical protein SS1G_03753 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1230

 Score =  343 bits (880), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 194/514 (37%), Positives = 277/514 (53%), Gaps = 54/514 (10%)

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH EI P  +L  VA L PY  HNQSPRN YQC M KQ +G        R D  LY +  
Sbjct: 747  THLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFSRIDTLLYLMVY 806

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
            PQ P+V+T T      D+ P G NA VAV++++GYD+EDA++LNK+S DRG    Q+++ 
Sbjct: 807  PQQPMVKTRTIELIKYDKLPAGQNATVAVMSFSGYDIEDALVLNKASCDRGFGRCQVFRK 866

Query: 748  ETIDLSDDGNKV-DR-GQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTT 805
             +  L    N+  DR   +    N    + H ++  DG+  VG+ I+ GE Y +    + 
Sbjct: 867  YSTQLKKYPNRSQDRIADRQVGENGKPIAKHRILGVDGIAMVGERINAGETYLNKESPSN 926

Query: 806  -------NSWRTNSRKGSESVFV--DYVAVD---MKNSKNLPQKANIRFRHTRNPIIGDK 853
                   N + +N  K +   +   DY  +D   +  ++N      ++ R TR P +GDK
Sbjct: 927  PNSSGMGNDYGSNDMKPAPMGYKLHDYAYIDKVMLSQTENESTVLKVQTRQTRRPELGDK 986

Query: 854  FSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLH 913
            FSSRHGQKGV   +    DMPF+  +G+ PD+I+NPH FPSRMT+  +LE ++ K G ++
Sbjct: 987  FSSRHGQKGVVGIIVNQEDMPFAD-SGVTPDIIMNPHGFPSRMTVGKMLELLSGKAGVVN 1045

Query: 914  GKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTC 973
            G     T F  S                VD +G++L   GF+Y G + + SG+ G  L  
Sbjct: 1046 GSLEYGTCFGGSN---------------VDVMGKILIDKGFSYSGKDFVTSGITGESLPA 1090

Query: 974  EIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGA 1033
             +F GP+YYQ+L+HMV DK   RS G    +TRQP +GR R GG+R GEMERD L+A+GA
Sbjct: 1091 YVFFGPIYYQKLKHMVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGA 1150

Query: 1034 AYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQ 1093
            + LL +RL   SD H  D+C  CG +  + +                        C  C+
Sbjct: 1151 SQLLLERLMLSSDAHEVDICETCGLMGYSGW------------------------CQTCK 1186

Query: 1094 TSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
            +SKG+ T+ MPY  + L  E+ +MN+ + L+L D
Sbjct: 1187 SSKGVSTMTMPYAAKLLVQEMLSMNVLVRLKLED 1220



 Score =  112 bits (280), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 108/467 (23%), Positives = 198/467 (42%), Gaps = 58/467 (12%)

Query: 36  DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
           + CR   ++Y   +  D+  +Y+   + V R+    G+ P+MLK+ +C L G + +++  
Sbjct: 166 NECRLRDMTYAAPIRVDI--KYMRGRTIVARKNIAIGRMPIMLKSSKCRLNGKNDRQMAH 223

Query: 96  LKEEAAEMGGYFILNGLERVF--------RSVILPKQNYPMSMVRSSFRDRREGYTDKAV 147
           + E A + GGYF++NG E+V           VI+     P   + S+   R +  +  +V
Sbjct: 224 MNECALDPGGYFVVNGTEKVILVQEQLSKNRVIIEAD--PKKGIVSASVTRSDCISRTSV 281

Query: 148 VIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTC 207
            +  +         K Y +L    R+       +  LP+ IVLKA+   +D E+   L  
Sbjct: 282 SLLTLNSSTHERKSKSYVMLKKE-RISLQHNILQEALPIVIVLKAMGIQSDHELL-LLVA 339

Query: 208 CYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ------PVIDG 261
             DE+Y+ E              +   E   L + T+ Q L++IG   +          G
Sbjct: 340 GSDERYQDE------------FSVNFEEATKLGVHTQHQALEYIGARVKMGSRARAPGGG 387

Query: 262 LQSESYYAVAETVIRDYIFVHLN----DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQ 317
            Q  +Y   A   + + I  H+     D   K   + FM++++   + +  + D+ D + 
Sbjct: 388 PQRRNYIGDALEALANIIITHVPVVGLDFRPKALYICFMVRRVLMAMVNPKLVDDRDYVG 447

Query: 318 NQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIE------NNGKKFDFFNLANIKKVME 371
           N+ + L G L+++      ED  +K    ++  I+      N G +FD +N         
Sbjct: 448 NKRLELAGQLLSLL----FEDLFKKFNTDLKMNIDKVLKKPNRGMEFDAYNHM------- 496

Query: 372 KNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFA 431
           ++    I   +   + TG  + +      +RAG T    RL+++  +     +   + F 
Sbjct: 497 QSHGNYITIGMNRAISTGNWSLKRF--KMERAGVTHVLSRLSYISALGMMTRI--SSQFE 552

Query: 432 GLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYD 477
             R  S  R L P  +G LC   TP+GE CGL+ ++     + +Y D
Sbjct: 553 KTRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTYDD 599


>gi|449300576|gb|EMC96588.1| hypothetical protein BAUCODRAFT_33950 [Baudoinia compniacensis UAMH
            10762]
          Length = 1214

 Score =  343 bits (880), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 204/512 (39%), Positives = 263/512 (51%), Gaps = 58/512 (11%)

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH EI P  +L  VA L PY  HNQSPRN YQC M KQ +G        R D  LY +  
Sbjct: 744  THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFTRIDTLLYLMVY 803

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
            PQ P+V T        D+ P G NAIVAV++Y+GYD+EDA++LNK+S DRG    Q+++ 
Sbjct: 804  PQKPMVSTRAIELVKYDKLPAGQNAIVAVMSYSGYDIEDALVLNKASCDRGFGRCQVFKK 863

Query: 748  ETIDLSDDGN-KVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN 806
              + L   GN   DR         DA   H  +  DG+   G  +  G+ Y         
Sbjct: 864  INVQLKTYGNGATDR----VTGRDDANPKHVKLGKDGIIEAGMQLAAGDTYMLKEKPLQQ 919

Query: 807  S---------WRTN--SRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFS 855
            S         W     S K  +  + D V V    S +   K  I+ R TR P +GDKFS
Sbjct: 920  SVSVAASAQIWAPEHMSYKLPDPCYADKVMVGTTESNHTIFK--IQTRQTRRPEVGDKFS 977

Query: 856  SRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGK 915
            SRHGQKGV   +    DMPFS  +G+ PD+I+NPH FPSRMT+  +LE VA K G L G 
Sbjct: 978  SRHGQKGVVGIIAEQADMPFSD-SGITPDIIMNPHGFPSRMTVGKMLELVAGKAGVLKGT 1036

Query: 916  FMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEI 975
                T F  S                V+E+G  L   GF+Y G + + SG+ G  L   +
Sbjct: 1037 QEYGTAFGGSK---------------VEEMGNELIRQGFSYSGKDCVTSGITGESLPAYV 1081

Query: 976  FIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAY 1035
            F GP+YYQ+L+HMV DK   RSTG    +TRQP +GR R GG+R GEMERD L+A+GA+ 
Sbjct: 1082 FFGPIYYQKLKHMVQDKMHARSTGPRAILTRQPTEGRSRAGGLRLGEMERDCLIAYGASQ 1141

Query: 1036 LLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTS 1095
            LL +RL   SD H  DVC  CG +    +                        C +C +S
Sbjct: 1142 LLLERLMLSSDAHEVDVCETCGMMGYNNW------------------------CTSCSSS 1177

Query: 1096 KGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
             G+  + MPY  + L  EL +MN+K +LQL D
Sbjct: 1178 VGVVKMTMPYAAKLLIQELLSMNVKASLQLED 1209



 Score = 87.8 bits (216), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 121/526 (23%), Positives = 207/526 (39%), Gaps = 99/526 (18%)

Query: 9   FEPLRELVRHHIESFDYMLDEGLSEMF--------------------------------- 35
           F  ++ LV+ HI+S++Y  D  L E+                                  
Sbjct: 113 FLRVKGLVKQHIDSYNYFTDVALQEIVRANRYIRSDAQKDRFIQFTGIRVGNPNRQDDRD 172

Query: 36  ----------DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN--FGQFPVMLKTRRC 83
                     + CR   ++Y   +  D    Y+ + S  +R + N   G+ P+ML++ +C
Sbjct: 173 RTNHESPVTPNECRLRDMTYAAPIFVD----YVWSSSTGLRRKTNKMIGRMPMMLRSSKC 228

Query: 84  HLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYT 143
            L G     +  L E + + GGYFI+ G E+    VIL ++           ++R    +
Sbjct: 229 VLSGRSEADMGMLNECSIDPGGYFIVRGQEK----VILVQEQLS--------KNRVIVES 276

Query: 144 DKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFN 203
            K ++   V    ++V  K Y LL   + +       E  +PV IVL+A+   +D EI  
Sbjct: 277 AKGIIQASVTSHTANVKTKTYVLLKKGLLVLKHNSLTED-IPVAIVLRAMGVQSDHEIL- 334

Query: 204 HLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ----PVI 259
            L    D  Y+ E                L +     + T+ Q L +I   F+    P  
Sbjct: 335 LLAAGNDATYQDEFAPN------------LEQAALEGVFTQEQALDYIASRFKPDRFPTF 382

Query: 260 DGLQSESYYAVAETVIRDYIFVHLNDNNDKFN----LLIFMLQKLFSLVDHTSVSDNPDS 315
            G  S+S    A   +   I  H+      F      + FM +++   +    + D+ D 
Sbjct: 383 AGKASKSPKQQALDKLAGTIIPHVEVEGLNFRPKALYIAFMTRRVLMAMHDPKLVDDRDY 442

Query: 316 LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEI---ENNGKKFDFFNLANIKKVMEK 372
           + N+ + L G ++ + L E L   + K  KL  D+I    N  ++FD   L ++ +    
Sbjct: 443 VGNKRLELAGQMLAL-LFEDLFKEVTKQIKLSMDKILKKHNPTQEFDPERLIDLSE---- 497

Query: 373 NPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAG 432
               +I T +E  + TG  A +       RAG T    RL+++  +     +   + F  
Sbjct: 498 ---SRITTGLERAISTGNWALKRF--RMDRAGVTHVLSRLSYISALGMMTRI--TSQFEK 550

Query: 433 LRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYD 477
            R  S  R L P  +G LC   TP+GE CGL+ ++     + +  D
Sbjct: 551 TRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTSDD 596


>gi|323449816|gb|EGB05701.1| hypothetical protein AURANDRAFT_38329 [Aureococcus anophagefferens]
          Length = 1233

 Score =  342 bits (878), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 324/1137 (28%), Positives = 495/1137 (43%), Gaps = 184/1137 (16%)

Query: 71   FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSM 130
             G  P+ML++R C L     ++L  L E   + GGYF++NG E+V    ++ ++    + 
Sbjct: 199  LGYVPIMLRSRFCVLADKSDKELCELGECIYDQGGYFVINGSEKV----VVAQERMSNNH 254

Query: 131  VRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKE--YLLP--- 185
            V   FR ++       V  R   +  +  T  +Y  +      G   QG +    LP   
Sbjct: 255  V-YCFRKKQPHKYSWVVECRSHVEHGARPTSTIYMQMYNKAGRG-QSQGNQIRVTLPYVR 312

Query: 186  ----VGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSL 241
                V +V +AL    D +I  H+   YD              + ER++  L E     +
Sbjct: 313  VDVPVIVVFRALGFVADRDILEHVV--YD---------FSDTEMMERLRPSLDEA--FVI 359

Query: 242  TTRLQCLQHIGEHFQPVIDGLQSESYYA--VAETVIRDYIFVHLNDNNDKFNLLIFMLQK 299
              +   L  IG        G      YA  + +  +  ++      +  K   + +++ K
Sbjct: 360  QNQTIALDFIGRRGSATNIGRSKRVQYAKELLQKEVLPHVGTEEQSDTKKAFFVGYIVHK 419

Query: 300  LFSLVDHTSVSDNPDSLQNQEILLPGHLI----TIYLKEKLEDWLRKGKKLIQDEIENNG 355
            L          D+ D    + + L G L+     +  ++  +D L   +K I D     G
Sbjct: 420  LLMCSLERIDEDDRDHYGKKRLDLAGPLLGGLFRMLFRKLTKDVLAYLQKCIDD-----G 474

Query: 356  KKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFL 415
            + F   NLA+  K      S+ +   +   L TG    +       RAG +    RL + 
Sbjct: 475  RDF---NLASAIK------SRVVTDGLRYSLATGNWGDRKD---ASRAGVSQVLNRLTYA 522

Query: 416  RFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASY 475
              +S  R ++      G +    R+L    WGF+CP  TP+G+  GL+ ++     V+  
Sbjct: 523  STLSHLRRLNTPLGREG-KQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLALMSYVS-- 579

Query: 476  YDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGP-----PAVLSVLLDGRVVGV-I 529
                         ++ IL  L       S+  L +  P     P    + ++G  VGV  
Sbjct: 580  ---------VGSPQSPILEFLEEW----SMENLEEISPQTIADPGTTKIFVNGSWVGVHR 626

Query: 530  PSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNIS 589
              S +E  +  LRR        I  D EV  V          L ++T   +  RP+    
Sbjct: 627  DPSTLESTLRSLRRQ-------IDIDPEVSVV---RDIKEKELRVYTDAGRVCRPL---- 672

Query: 590  LPSEESQNIELIGPFEQVFMEIRCPDG-------GDGG-----------------RRNAF 625
            L  E +  +  +   E  F E+R           GD G                    A 
Sbjct: 673  LIVEAASTVTRVRSQEATFQELRLRKSHVQKLVNGDLGWTQLLVKGLVELIDTEEEETAM 732

Query: 626  PA--------------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSV 671
             A              TH EIHP+ +L +  ++ P+ DHNQSPRN YQ  M KQ MG   
Sbjct: 733  IAMIPSDLNEPYSSTYTHCEIHPSMILGICGSIIPFPDHNQSPRNTYQSAMGKQAMGIYA 792

Query: 672  QALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILN 731
               + R D   + L  PQ P+  T         E P+G NAIVA++ YTGY+ ED++I+N
Sbjct: 793  SNFQQRMDTLSHVLHYPQKPLATTRAMEHLHFRELPSGVNAIVAIMCYTGYNQEDSLIMN 852

Query: 732  KSSVDRGMCHGQIYQTETIDLSDDG--NKVDRGQKLFRR-NKDAKSL-----HSVIDSDG 783
            ++++DRG+     Y+T +    + G  +  +  Q+ F R N+D  +      +  IDSDG
Sbjct: 853  QAAIDRGLFRSTFYRTYSDKEHNKGIWDSPEYLQETFERPNRDECTAMRHGSYEKIDSDG 912

Query: 784  LPYVGQMIHPGEPYCSIYDKTTNSWRTN---SRKG------------SESVFVDYVAVDM 828
            L   G  +   +    +  KT+ SW +     R G            +ES  VD V   +
Sbjct: 913  LVSPGVRVSGSD---ILVGKTSPSWHSGLKAERSGPSKRDSSTTMRPNESGLVDQVM--L 967

Query: 829  KNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIIN 888
              +++  +   +R R  R P IGDKF+SRHGQKG     +   DMP++   G+ PD+I+N
Sbjct: 968  STNQDGMKFTKVRTRTIRIPQIGDKFASRHGQKGTIGMTYAQEDMPWTR-DGVSPDIIVN 1026

Query: 889  PHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEM 948
            PHA PSRMTI  L+E + +K G+L GK  DATPF            TD S   VD++  +
Sbjct: 1027 PHAIPSRMTIGHLVECLQSKVGALTGKEGDATPF------------TDVS---VDQIAGV 1071

Query: 949  LRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQP 1008
            L   G++ HG EV+YSG  G  +  ++F+GP +YQRL+H+V DK   RS G +  +TRQP
Sbjct: 1072 LHELGYHRHGNEVMYSGHTGRIIHAKVFLGPTFYQRLKHLVDDKIHARSRGPVTMLTRQP 1131

Query: 1009 IKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQ 1068
            ++GR R GG+R GEMERD L++HG +  L DR+   SD +   VC+LCG +  A     +
Sbjct: 1132 MEGRARDGGLRMGEMERDCLISHGVSSFLRDRMFANSDPYSIHVCTLCGLIAHADL---R 1188

Query: 1069 KRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
            KRA              K   HA   +  +  V +PY  + L  EL AM I   +Q+
Sbjct: 1189 KRAF---------WCNNKDCQHA---NSSIVRVHIPYACKLLFQELMAMCIAPRIQV 1233


>gi|227828173|ref|YP_002829953.1| DNA-directed RNA polymerase subunit B [Sulfolobus islandicus M.14.25]
 gi|229585402|ref|YP_002843904.1| DNA-directed RNA polymerase subunit B [Sulfolobus islandicus M.16.27]
 gi|238620363|ref|YP_002915189.1| DNA-directed RNA polymerase subunit B [Sulfolobus islandicus M.16.4]
 gi|385773843|ref|YP_005646410.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus HVE10/4]
 gi|385776478|ref|YP_005649046.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus REY15A]
 gi|227459969|gb|ACP38655.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus M.14.25]
 gi|228020452|gb|ACP55859.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus M.16.27]
 gi|238381433|gb|ACR42521.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus M.16.4]
 gi|323475226|gb|ADX85832.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus REY15A]
 gi|323477958|gb|ADX83196.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus HVE10/4]
          Length = 1131

 Score =  342 bits (878), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 307/1108 (27%), Positives = 485/1108 (43%), Gaps = 149/1108 (13%)

Query: 67   ERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNY 126
            E    G  P+MLK+    +      KL+ + E+  + GGYFI+NG ERV    I+ +++ 
Sbjct: 115  EEVYIGDLPIMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVNGSERV----IVTQEDL 170

Query: 127  PMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGF-WLQGKEYLLP 185
              + V           T  A +I      +  VT++   L +G+  + F  + GK   +P
Sbjct: 171  APNRVLVDTGKTGSNITHTAKIISSTAGYRVPVTIE--RLKDGTFHVSFPAVPGK---IP 225

Query: 186  VGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRL 245
              I+++AL    D +I        D + + E      P + +   I  A V D       
Sbjct: 226  FVILMRALGILTDRDIV--YAVSLDPEIQNEL----FPSLEQASSI--ANVDD------- 270

Query: 246  QCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQKLF 301
              L  IG     V  G + E+    A+ +I  Y   HL    +D   K   L + + K+ 
Sbjct: 271  -ALDFIGSR---VAIGQKRENRIEKAQQIIDKYFLPHLGTSADDRRKKAYYLAYAISKVI 326

Query: 302  SLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFF 361
             L       D+ D   N+ + L G L     +   + +++     ++   +  G+K    
Sbjct: 327  ELYLGRREPDDKDHYANKRLRLAGDLFASLFRVAFKAFVKDLTYQLEKS-KVRGRKLALK 385

Query: 362  NLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFF 421
             L     V E+                 R A  TG  +  R G +   +R N+L  +S  
Sbjct: 386  ALVRPDIVTERI----------------RHALATGNWVGGRTGVSQLLDRTNWLSMLSHL 429

Query: 422  RAVHRGASFA-GLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRG 480
            R V   +S A G      R L    WG +CP  TP+G   GL+ ++    ++A   + R 
Sbjct: 430  RRVI--SSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNLALMAQIAVGINER- 486

Query: 481  NIRDFSKMRTSILRVLIGVGMIPS---LPKLVKSGPP-----AVLSVLLDGRVVGVI-PS 531
                       + + L  +G++P    + ++ + G           V+L+GR+VG     
Sbjct: 487  ----------IVEKTLYEMGVVPVEEVIRRVTEGGEDQNEYLKWSKVILNGRLVGYYRDG 536

Query: 532  SEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISL- 590
             E+ K +   RR        I D++ VG++          +++     +  RP+  +S  
Sbjct: 537  EELAKKIRERRR-----NGEISDEVNVGHIVTDFINE---VHVNCDSGRVRRPLIIVSNG 588

Query: 591  -PSEESQNIELIGP----FEQVFMEIRCPDGGDGGRRNAFPA----------THEEIHPT 635
             P    ++IE +      F+ +  + +          NA+ A          TH EI   
Sbjct: 589  NPLVTREDIEKLDSGSITFDDLVRQGKIEYLDAEEEENAYVALEPSDLTPEHTHLEIWSP 648

Query: 636  GMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRT 695
             +L + A++ PY +HNQSPRN YQ  MAKQ +G      + R D + + L  PQ P+V+T
Sbjct: 649  AILGITASIIPYPEHNQSPRNTYQSAMAKQALGLYAANYQLRTDTRAHLLHYPQRPLVQT 708

Query: 696  NTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG---QIYQTETID- 751
                  G    P G NAI+AV+++TGY+MED++I+N+SSV+RGM      ++Y TE +  
Sbjct: 709  RALDIIGYTNRPAGNNAILAVISFTGYNMEDSIIMNRSSVERGMYRSTFFRLYSTEEVKY 768

Query: 752  ---------LSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYD 802
                     + + G +  +G++ +R  +D   +   ++  G   +   + P        +
Sbjct: 769  PGGQEDKIVMPEPGVRGYKGKEYYRLLEDNGVVSPEVEVKGGDVLIGKVSPPRFLQEFKE 828

Query: 803  KTTNSWRTNSR---KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHG 859
             +    + ++    +  E   VD V +      N  +   +R R  R P IGDKF+SRHG
Sbjct: 829  LSPEQAKRDTSIVTRHGEMGIVDLVLITETAEGN--KLVKVRVRDLRIPSIGDKFASRHG 886

Query: 860  QKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDA 919
            QKGV   L P +DMP++ V G+ PD+I+NPHA PSRMT+  ++E +A K  +L G  +DA
Sbjct: 887  QKGVIGMLIPQVDMPYT-VKGVVPDVILNPHALPSRMTLGQIMEGIAGKYAALSGNIVDA 945

Query: 920  TPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGP 979
            TPF                K+ +++L   +   G+     EV Y G  G ++   I+ G 
Sbjct: 946  TPF---------------YKTPIEQLQNEILKYGYLPDATEVTYDGRTGQKIKSRIYFGV 990

Query: 980  VYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHD 1039
            VYYQ+L HMV+DK   R+ G +  +TRQP +GR R GG+RFGEMERD L+  G A LL D
Sbjct: 991  VYYQKLHHMVADKIHARARGPVQILTRQPTEGRAREGGLRFGEMERDCLIGFGTAMLLKD 1050

Query: 1040 RLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGME 1099
            RL   SD     VC  CG                 IG     +   K  C        + 
Sbjct: 1051 RLLDNSDRTTIYVCDQCGY----------------IGWY--DKNKNKYICPIHGDKSNLF 1092

Query: 1100 TVAMPYVFRYLAAELAAMNIKITLQLGD 1127
             V + Y F+ L  EL +M I   L L D
Sbjct: 1093 PVTVSYAFKLLIQELMSMIISPRLILED 1120


>gi|300123537|emb|CBK24809.2| unnamed protein product [Blastocystis hominis]
          Length = 1056

 Score =  342 bits (878), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 305/1069 (28%), Positives = 479/1069 (44%), Gaps = 125/1069 (11%)

Query: 38   CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
            CR+  ++Y+  + AD+ +     G  ++R++   GQ P+ML + +C L+     +L +++
Sbjct: 45   CRKRSLTYSAPIFADIIYTL---GDKIIRKKVRIGQIPIMLHSCKCVLRNKSPAELAAMQ 101

Query: 98   EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
            E   + GGYFI+ G E+V  S     +N  +  +            D   ++  V    +
Sbjct: 102  ECLYDPGGYFIVKGNEKVLLSGEQMSKNRVLCDI-----------NDDGTIVVNVTSSTA 150

Query: 158  SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
                + Y L           +GK YL       K  V T D+ I     C   E  ++  
Sbjct: 151  ERKSRCYVLEK---------KGKLYL-------KHNVFTKDIPICIAFRCMGIESDQEIM 194

Query: 218  GAVGS-PLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAE---- 272
              +G+ P         + E  +L + T+ Q L+ +G     +  G  S    A  E    
Sbjct: 195  ALIGNEPKYRTYFNQSIEEAHELGIFTQQQALKWVGS-LVSMRKGRWSRKRSAEEEGREV 253

Query: 273  --TVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLV-DHTSVSDNPDSLQNQEILLPGHLIT 329
              T I  ++ V   D   K   L +M ++    + DH+ +SD  D   N+ I   G L++
Sbjct: 254  FNTTILCHVPVVRYDFWPKCVYLAYMTRECLQCIFDHSLLSDK-DYYGNKRIETAGDLMS 312

Query: 330  IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
            +  ++  + +  K K+ +   ++   +     N  ++  VM++         +  +    
Sbjct: 313  LLFEDLFKMYNAKVKEFVNKSLQKTTR----VNAFDVVPVMQQFHDIITNGCVNAIKSGN 368

Query: 390  RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
             +  +  +D   R G      RL+++  I     + R       + +  R L P  +G +
Sbjct: 369  WVLKRFHID---RKGVAEPVTRLSYIAAIGHMTRI-RSHVEKAQKISGPRALQPSQFGMV 424

Query: 450  CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV-LIGVGMIPSLPKL 508
            CP  TP+GE CGL+  +T    +    D +        +R     + ++ VG+  +    
Sbjct: 425  CPSDTPEGEQCGLVKSLTILAYITIDQDEKA-------LRQVAYDLGVLDVGLFGAEELY 477

Query: 509  VKSGPPAVLSVLLDGRVVGV--IPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLG 566
             +   PA L V L+G ++GV   P + +  V    RR  + A   +  D     V LS  
Sbjct: 478  AR---PASL-VFLNGGLLGVHSQPQALVRGVRQLRRRGLLGAFVSVYYDRIRRCVHLSCD 533

Query: 567  GAYPGLYLFTSPPKFVRP---------VRNISLPSEE---SQNIELIGPFEQVFMEIRCP 614
            G      L     +  RP         +R  ++  +E   +  IE I   E+    I   
Sbjct: 534  GGRICRPLLVLNRETGRPFLTKAHTDGIRRGTITIQELVRAGVIEYIDVNEENSCLIAVT 593

Query: 615  DGGDGGRRNAFPA-THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQA 673
            D      ++  PA TH EI P  +L +VA+L PY DHNQSPRN YQC M KQ +G     
Sbjct: 594  D------KDITPAHTHMEIDPVSILGIVASLIPYPDHNQSPRNTYQCAMGKQAIGTVACN 647

Query: 674  LKFRAD-QKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNK 732
             + R D   L  +  P  P+VR+         + P G NA+VAV++Y+GYD+EDA++LN+
Sbjct: 648  QQQRVDVSPLNVMVYPMMPMVRSRVLDLLHFSQLPAGQNAMVAVMSYSGYDIEDAVVLNR 707

Query: 733  SSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSL-----------HSVIDS 781
            +S+DRG     I + +   L    N      K   R +D K++           +  + S
Sbjct: 708  ASIDRGYGRVVISKKQVFSLKKYPNGSSDLIKGPPRREDQKNIDDHTWNRLFEPYKALGS 767

Query: 782  DGLPYVGQMIHPGEPYCS--------IYDKTTNSWRTNSRKGSESV-FVDYVAVDMKNSK 832
            DG+   G  IHPG+   +         +    +  R    K  ES  +VD V +   +++
Sbjct: 768  DGIVESGVPIHPGDIMVNKHVPMDTGSFGADRDQLRAAPVKYKESGGYVDKVLITTTDNE 827

Query: 833  NLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAF 892
                K  +R    R P +GDKFSSRHGQKGV   +    ++PFS   G+ PD+I+NPH F
Sbjct: 828  YFVIKTMVR--DMRRPELGDKFSSRHGQKGVVGLITGQENLPFS-TAGIYPDMIMNPHGF 884

Query: 893  PSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTC 952
            PSRMT+  ++E +A K G   G+    T F           GTD     +++  E L   
Sbjct: 885  PSRMTVGKMMELLAGKAGLWDGERKFGTIFG----------GTD-----IEDCAEELIRH 929

Query: 953  GFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGR 1012
            GFNY G ++ YSG+ G  L   IF GPVYYQRL+HMV DK   R+ G    +T QP +GR
Sbjct: 930  GFNYSGKDLFYSGITGEPLRAYIFTGPVYYQRLKHMVKDKVFARAKGPRMALTHQPTQGR 989

Query: 1013 KRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSD-----YHVADVCSLC 1056
             R GG+R GEMERD L+AHG + LL +RL   SD      ++A   S+C
Sbjct: 990  SRDGGLRVGEMERDCLVAHGTSMLLIERLLLSSDPFLSGANIASRASMC 1038


>gi|46669|emb|CAA32924.1| RNA polymerase subunit B (AA 1-1126) [Sulfolobus acidocaldarius]
          Length = 1126

 Score =  342 bits (878), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 301/1119 (26%), Positives = 493/1119 (44%), Gaps = 161/1119 (14%)

Query: 61   GSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVI 120
            G P+       G  P+MLK+           KL+ + E+  + GGYFI+NG E++    I
Sbjct: 107  GEPI---EIYIGDLPIMLKSVADPTSNLPIDKLIEIGEDPKDPGGYFIVNGSEKM----I 159

Query: 121  LPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFW-LQG 179
            + +++   + V   +       T  A V       +  V ++   L + ++++ F  + G
Sbjct: 160  IAQEDLATNRVLVDYGKSGSNITHVAKVTSSAAGYRVQVMIE--RLKDSTIQISFATVPG 217

Query: 180  KEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDL 239
            +   +P  I+++AL    D +I        D + + E              ++ +  Q  
Sbjct: 218  R---IPFAIIMRALGFVTDRDIV--YAVSLDPQIQNE--------------LLPSLEQAS 258

Query: 240  SLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHL----NDNNDKFNLLIF 295
            S+T+  + L  IG     V  G + E+    AE VI  Y   HL     D   K   L  
Sbjct: 259  SITSAEEALDFIGNR---VAIGQKRENRIQKAEQVIDKYFLPHLGTSPEDRKKKGYYLAS 315

Query: 296  MLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQ--DEIEN 353
             + K+  L       D+ D   N+ + L G L T   +   + ++   K L+   ++ + 
Sbjct: 316  AVNKILELYLGRREPDDKDHYANKRVRLAGDLFTSLFRVAFKAFV---KDLVYQLEKSKV 372

Query: 354  NGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLN 413
             G++     L     + E+                 R A  TG  +  R G +   +R N
Sbjct: 373  RGRRLSLTALVRADIITERI----------------RHALATGNWVGGRTGVSQLLDRTN 416

Query: 414  FLRFISFFRAVHRGASFA-GLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRV 472
            +L  +S  R V   +S A G      R L    WG +CP  TP+G   GL+ ++    +V
Sbjct: 417  WLSMLSHLRRVV--SSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNLALLAQV 474

Query: 473  ASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPP---------AVLSVLLDG 523
            +   +            + + RV   +G++ S+  +++             +   V L+G
Sbjct: 475  SVGINE-----------SVVERVAYELGVV-SVEDVIRRISEQNEDVEKYMSWSKVYLNG 522

Query: 524  RVVGVIPS-SEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFV 582
            R++G      E+ K +   RR        + D++ V Y+          +++     +  
Sbjct: 523  RLLGYYEDGKELAKKIRESRR-----QGKLSDEVNVAYIATDYLNE---VHINCDAGRVR 574

Query: 583  RP--VRNISLPSEESQNIELIGPFEQVFME------IRCPDGGDGGRRNAFPA------- 627
            RP  + N   P  ++++I+ +   E  F +      I   D  +    NA+ A       
Sbjct: 575  RPLIIVNNGTPLVDTEDIKKLKNGEITFDDLVKQGKIEFIDAEE--EENAYVALNPQDLT 632

Query: 628  ---THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
               TH EI P+ +L ++A++ PY +HNQSPRN YQ  MAKQ++G      + R D + + 
Sbjct: 633  PDHTHLEIWPSAILGIIASIIPYPEHNQSPRNTYQSAMAKQSLGLYASNYQIRTDTRAHL 692

Query: 685  LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG-- 742
            L  PQ P+V+T      G ++ P G NAI+A+++YTGY+MED++I+NKSS++RGM     
Sbjct: 693  LHYPQMPLVQTRMLGVIGYNDRPAGANAILAIMSYTGYNMEDSIIMNKSSIERGMYRSTF 752

Query: 743  -QIYQTETIDL----------SDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMI 791
             ++Y TE +             + G K  +G+  +R  +D   +   ++  G   +   +
Sbjct: 753  FRLYSTEEVKYPGGQEDKIVTPEAGVKGYKGKDYYRLLEDNGVVSPEVEVKGGDVLIGKV 812

Query: 792  HPGEPYCSIYDKTTNSWRTNSR---KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNP 848
             P        + +    + ++    +  E+  VD V +      N  +   +R R  R P
Sbjct: 813  SPPRFLQEFKELSPEQAKRDTSIVTRHGENGIVDLVLITETLEGN--KLVKVRVRDLRIP 870

Query: 849  IIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
             IGDKF++RHGQKGV   L   +DMP++   G+ PD+I+NPHA PSRMTI  ++E++  K
Sbjct: 871  EIGDKFATRHGQKGVVGILIDQVDMPYTA-KGIVPDIILNPHALPSRMTIGQIMEAIGGK 929

Query: 909  GGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYG 968
              +L GK +DATPF  + K              + E+ + +   G      EV+Y G  G
Sbjct: 930  YAALSGKPVDATPFLETPK--------------LQEMQKEILKLGHLPDSTEVVYDGRTG 975

Query: 969  TELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSL 1028
             +L   I  G VYYQ+L HMV+DK   R+ G +  +TRQP +GR R GG+RFGEMERD L
Sbjct: 976  QKLKSRILFGIVYYQKLHHMVADKMHARARGPVQILTRQPTEGRAREGGLRFGEMERDCL 1035

Query: 1029 LAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVT 1088
            +  G A L+ DRL   S   V  +C  CG V                      R+  +  
Sbjct: 1036 IGFGTAMLIKDRLLDNSYKAVVYICDQCGYVGWYD------------------RSKNRYV 1077

Query: 1089 CHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
            C        +  V + Y F+ L  EL +M I   L LG+
Sbjct: 1078 CPVHGDKSVLHPVTVSYAFKLLIQELMSMVISPRLILGE 1116


>gi|356520824|ref|XP_003529060.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Glycine
            max]
          Length = 1152

 Score =  342 bits (877), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 198/520 (38%), Positives = 278/520 (53%), Gaps = 51/520 (9%)

Query: 627  ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQ 686
             TH EI P  +L V+A L PY  HNQSPRN YQC M KQ MG        R D  LY L 
Sbjct: 666  TTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLRRMDSLLYLLV 725

Query: 687  TPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQ 746
             PQ P++ T T    G D+   G NA VAV++Y+GYD+EDA+++NK+S+DRG     + +
Sbjct: 726  YPQRPLLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMK 785

Query: 747  TETIDLSDDGNKVDRGQKLFRRNK--DAKSLHSVIDSDGLPYVGQMIHPGEPYC------ 798
                 +    N  D   ++ R N+  D      ++D DG+   G+++ P + Y       
Sbjct: 786  KYNAIIQKHSN--DTSDRILRPNRTADTAGRMQILDDDGIAAPGEILRPYDIYINKQSPI 843

Query: 799  --------SIYDKTTNSWRTNSR--KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNP 848
                    S  +   +++R+N++  KG+    VD V +      N+  K  IR  HTR P
Sbjct: 844  DTRTPKTGSAANLPDSAYRSNAQSFKGNGGEVVDRVVLCSDKDNNMCIKFLIR--HTRRP 901

Query: 849  IIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
             +GDKFSSRHGQKGVC  + P  D PFS   G+ PDLI+NPH FPSRMT+  ++E +  K
Sbjct: 902  ELGDKFSSRHGQKGVCGTIVPQEDFPFSE-KGICPDLIMNPHGFPSRMTVGKMIELLGGK 960

Query: 909  GGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYG 968
             G   G+F   + F    +  + D         V+ + E L + GFNY G + +YSG+ G
Sbjct: 961  AGVSCGRFHYGSAFGE--RSGHADK--------VETISETLVSKGFNYSGKDFIYSGITG 1010

Query: 969  TELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSL 1028
              L   IF+GP+YYQ+L+HMV DK   R +G    +TRQP +GR R GG+R GEMERD L
Sbjct: 1011 CPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCL 1070

Query: 1029 LAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVT 1088
            +A+GA+ L+++RL   SD     VC+ CG  L   + H  K  I                
Sbjct: 1071 IAYGASMLIYERLMLSSDPFEVQVCTACG--LLGYYNHKLKTGI---------------- 1112

Query: 1089 CHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGDG 1128
            C +C+    + T+ +PY  + +  EL +MNI   L+L D 
Sbjct: 1113 CSSCKNGDNISTMKLPYACKLMIQELQSMNIVPRLKLADA 1152



 Score =  104 bits (259), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 115/519 (22%), Positives = 210/519 (40%), Gaps = 106/519 (20%)

Query: 8   DFEPLRELVRHHIESFDY--------------------------------------MLDE 29
           +F  +R LV+ H++SF+Y                                      M+DE
Sbjct: 52  EFLKVRGLVKQHLDSFNYFVRTDIKKIVRANDLIVASRYPHIYLRFLNVGIGKPSIMIDE 111

Query: 30  GLSEMFDH-CRQAKISYTGKLMADVEFQYLDAGSPVVRERFN--FGQFPVMLKTRRCHLQ 86
              ++    CR + ++Y   + ADVE+       P ++ +     G+ P+ML++  C L 
Sbjct: 112 VTEDLTPQTCRLSDLTYAAPICADVEYTLGSHDKPDIKRKLKVEIGRMPIMLRSCCCVLH 171

Query: 87  GADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKA 146
           G D  +L  L E   + GGYF++ G E+V   +++ +Q   +S  R      ++G    +
Sbjct: 172 GRDEAELAKLGECPLDPGGYFVIKGTEKV---ILIQEQ---LSKNRIIIDTDKKGNITAS 225

Query: 147 VVIRCVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEY--LLPVGIVLKALVDTNDLEIFN 203
           V     + K ++ V ++         +   WLQ  ++   +P+ +V+KA+   +D E+  
Sbjct: 226 VTSSTEKIKTKTVVVME---------KEKLWLQLNKFPKKVPLMVVMKAMGMESDQEVTQ 276

Query: 204 HLTCCYDEKYKKEKGAVG-SPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGL 262
                           VG  P  S  +   + E     + TR Q L+++        D L
Sbjct: 277 ---------------MVGRDPRYSFLLLPSIEECTKCKVYTREQALEYL--------DKL 313

Query: 263 QSESYYAVAETVIRDYIFVHLNDNNDKFN----LLIFMLQKLFSLVDHTSVSDNPDSLQN 318
           +  ++ A     +RD    ++  + D F      +  M++++   + +    D+ D + N
Sbjct: 314 EGAAFSA-----LRDVFLANVPVDQDNFRPKCIYVAVMMRRIMDAILNKDAMDDKDYVGN 368

Query: 319 QEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIE--NNGKKFDFFNLANIKKVMEKNPSK 376
           + + L G LI++  ++  +    + K L    +E  +  K FD   L    + +      
Sbjct: 369 KRLELSGQLISLLFEDLFKSMTTEVKNLTDKMLEKPDKAKNFDICTLLTRTRSI------ 422

Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
            I   +E  L TG    +      +R G T   +RL+F+  +     V     F   R  
Sbjct: 423 -ITLGLERTLSTGNFEIKRFR--MERKGMTQVLQRLSFIGALGHMTRV--SPQFEKSRKV 477

Query: 437 S-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVAS 474
           S  R L P  WG LCP  TP+GE CGL+ ++     V +
Sbjct: 478 SGPRALQPSQWGMLCPCDTPEGESCGLVKNLALMTHVTT 516


>gi|229579766|ref|YP_002838165.1| DNA-directed RNA polymerase subunit B [Sulfolobus islandicus
            Y.G.57.14]
 gi|229581565|ref|YP_002839964.1| DNA-directed RNA polymerase subunit B [Sulfolobus islandicus
            Y.N.15.51]
 gi|228010481|gb|ACP46243.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus Y.G.57.14]
 gi|228012281|gb|ACP48042.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus Y.N.15.51]
          Length = 1131

 Score =  342 bits (877), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 305/1108 (27%), Positives = 484/1108 (43%), Gaps = 149/1108 (13%)

Query: 67   ERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNY 126
            E    G  P+MLK+    +      KL+ + E+  + GGYFI+NG ERV    I+ +++ 
Sbjct: 115  EEVYIGDLPIMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVNGSERV----IVTQEDL 170

Query: 127  PMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGF-WLQGKEYLLP 185
              + V           T  A +I      +  VT++   L +G+  + F  + GK   +P
Sbjct: 171  APNRVLVDTGKTGSNITHTAKIISSTAGYRVPVTIE--RLKDGTFHVSFPAVPGK---IP 225

Query: 186  VGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRL 245
              I+++AL    D +I        D + + E      P + +   I  A V D       
Sbjct: 226  FVILMRALGILTDRDIV--YAVSLDPEIQNEL----FPSLEQASSI--ANVDD------- 270

Query: 246  QCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQKLF 301
              L  IG     V  G + E+    A+ +I  Y   HL    +D   K   L + + K+ 
Sbjct: 271  -ALDFIGSR---VAIGQKRENRIEKAQQIIDKYFLPHLGTSADDRRKKAYYLAYAISKVI 326

Query: 302  SLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFF 361
             L       D+ D   N+ + L G L     +   + +++     ++   +  G+K    
Sbjct: 327  ELYLGRREPDDKDHYANKRLRLAGDLFASLFRVAFKAFVKDLTYQLEKS-KVRGRKLALK 385

Query: 362  NLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFF 421
             L     V E+                 R A  TG  +  R G +   +R N+L  +S  
Sbjct: 386  ALVRPDIVTERI----------------RHALATGNWVGGRTGVSQLLDRTNWLSMLSHL 429

Query: 422  RAVHRGASFA-GLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRG 480
            R V   +S A G      R L    WG +CP  TP+G   GL+ ++    ++A   + R 
Sbjct: 430  RRVI--SSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNLALMAQIAVGINER- 486

Query: 481  NIRDFSKMRTSILRVLIGVGMIPS---LPKLVKSGPP-----AVLSVLLDGRVVGVI-PS 531
                       + + L  +G++P    + ++ + G           V+L+GR+VG     
Sbjct: 487  ----------IVEKTLYEMGVVPVEEVIRRVTEGGEDQNEYLKWSKVILNGRLVGYYRDG 536

Query: 532  SEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISL- 590
             E+ K +   RR        I D++ VG++          +++     +  RP+  +S  
Sbjct: 537  EELAKKIRERRR-----NGEISDEVNVGHIVTDFINE---VHVNCDSGRVRRPLIIVSNG 588

Query: 591  -PSEESQNIELIGP----FEQVFMEIRCPDGGDGGRRNAFPA----------THEEIHPT 635
             P    ++IE +      F+ +  + +          NA+ A          TH EI   
Sbjct: 589  NPLVTREDIEKLDSGSITFDDLVRQGKIEYLDAEEEENAYVALEPSDLTPEHTHLEIWSP 648

Query: 636  GMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRT 695
             +L + A++ PY +HNQSPRN YQ  MAKQ +G      + R D + + L  PQ P+V+T
Sbjct: 649  AILGITASIIPYPEHNQSPRNTYQSAMAKQALGLYAANYQLRTDTRAHLLHYPQRPLVQT 708

Query: 696  NTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG---QIYQTETID- 751
                  G    P G NAI+AV+++TGY+MED++I+N+SSV+RGM      ++Y TE +  
Sbjct: 709  RALDIIGYTNRPAGNNAILAVISFTGYNMEDSIIMNRSSVERGMYRSTFFRLYSTEEVKY 768

Query: 752  ---------LSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYD 802
                     + + G +  +G++ +R  +D   +   ++  G   +   + P        +
Sbjct: 769  PGGQEDKIVMPEPGVRGYKGKEYYRLLEDNGVVSPEVEVKGGDVLIGKVSPPRFLQEFKE 828

Query: 803  KTTNSWRTNSR---KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHG 859
             +    + ++    +  E   VD V +      N  +   +R R  R P IGDKF+SRHG
Sbjct: 829  LSPEQAKRDTSIVTRHGEMGIVDLVLITETAEGN--KLVKVRVRDLRVPSIGDKFASRHG 886

Query: 860  QKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDA 919
            QKGV   L P +DMP++ V G+ PD+I+NPHA PSRMT+  ++E +A K  +L G  +DA
Sbjct: 887  QKGVIGMLIPQVDMPYT-VKGVVPDVILNPHALPSRMTLGQIMEGIAGKYAALSGNIVDA 945

Query: 920  TPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGP 979
            TPF                K+ +++L   +   G+     EV Y G  G ++   I+ G 
Sbjct: 946  TPF---------------YKTPIEQLQNEILKYGYLPDATEVTYDGRSGQKIKSRIYFGV 990

Query: 980  VYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHD 1039
            VYYQ+L HMV+DK   R+ G +  +TRQP +GR R GG+RFGEMERD L+  G A LL D
Sbjct: 991  VYYQKLHHMVADKIHARARGPVQILTRQPTEGRAREGGLRFGEMERDCLIGFGTAMLLKD 1050

Query: 1040 RLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGME 1099
            RL   SD     VC  CG +                      +   K  C        + 
Sbjct: 1051 RLLDNSDRTTIYVCDQCGYIGWYD------------------KNKNKYICPIHGDKSNLF 1092

Query: 1100 TVAMPYVFRYLAAELAAMNIKITLQLGD 1127
             V + Y F+ L  EL +M I   L L D
Sbjct: 1093 PVTVSYAFKLLIQELMSMIISPRLILED 1120


>gi|449447799|ref|XP_004141655.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Cucumis
            sativus]
          Length = 1158

 Score =  342 bits (876), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 208/521 (39%), Positives = 279/521 (53%), Gaps = 54/521 (10%)

Query: 627  ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQ 686
             TH EI P  +L VVA L PY  HNQSPRN YQC M KQ MG        R D  LY L 
Sbjct: 673  TTHIEIEPFTILGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLRRMDTLLYLLV 732

Query: 687  TPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQ 746
             PQ P++ T T    G D+   G NA VAV++Y+GYD+EDA+++NKSS+DRG     +++
Sbjct: 733  YPQRPLLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVFK 792

Query: 747  T-ETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHP------------ 793
               +++   + N  DR  +   RN+D      ++D DGL   G++I P            
Sbjct: 793  KYSSVNQKYENNTADRIVRP-NRNEDFTGNMQILDDDGLAAPGEIIRPNDIYVNKQSPII 851

Query: 794  --GEPYCSIYDKTTNSWRTNSR--KGSES--VFVDYVAVDMKNSKNLPQKANIRFRHTRN 847
              G P   I D   N++R   +  KGSE     VD VA+    +  L  K  IR   TR 
Sbjct: 852  MKGSPLPGIPD---NAYRPCRQIFKGSEGEPTVVDRVALSTDKNDCLCIKFLIR--QTRR 906

Query: 848  PIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAA 907
            P +GDKFSSRHGQKGVC  +    D PFS   G+ PDLI+NPH FPSRMT+  ++E +  
Sbjct: 907  PELGDKFSSRHGQKGVCGTIVQQEDFPFSE-RGICPDLIMNPHGFPSRMTVGKMIELLGG 965

Query: 908  KGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVY 967
            K G   G+F   + F        G+      K  VD + E L   GF+Y+G + LYSG+ 
Sbjct: 966  KAGVSCGRFHYGSAF--------GEPSGHADK--VDAISETLIKRGFSYNGKDFLYSGIT 1015

Query: 968  GTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDS 1027
            G  L   IF+GP+YYQ+L+HMV DK   R +G    +TRQP +GR R GG+R GEMERD 
Sbjct: 1016 GCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDC 1075

Query: 1028 LLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKV 1087
            L+A+GA+ L+++RL   SD     VC +CG  L   + H  K  I               
Sbjct: 1076 LIAYGASMLIYERLMISSDPFEVQVCRVCG--LLGYYNHKLKTGI--------------- 1118

Query: 1088 TCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGDG 1128
             C +C+    + T+ +PY  + L  EL +MNI   L+L + 
Sbjct: 1119 -CSSCKNGDNISTMKLPYACKLLIQELQSMNIVPRLKLAEA 1158



 Score = 98.6 bits (244), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 118/519 (22%), Positives = 210/519 (40%), Gaps = 94/519 (18%)

Query: 8   DFEPLRELVRHHIESFDYMLD-------------------------------------EG 30
           +F  +R LV+ H++SF+Y ++                                       
Sbjct: 47  EFLKVRGLVKQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYLRFLDVRIGEPSVTVNA 106

Query: 31  LSEMFD--HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN--FGQFPVMLKTRRCHLQ 86
           +SE  +   CR + ++Y   ++ D+E+          RE+ +   G+ P+ML++R C L 
Sbjct: 107 VSETINPHMCRLSDLTYAAPILVDIEYIEESHAQKAPREKKDVVIGRMPIMLRSRCCVLH 166

Query: 87  GADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKA 146
           G D  +L  L E   + GGYFI+ G E+V   V++ +Q   +S  R      ++G  + A
Sbjct: 167 GKDEAELARLGECPLDPGGYFIIKGTEKV---VLIQEQ---LSKNRIIIDTDKKGNIN-A 219

Query: 147 VVIRCVRKDQSSVTLKL----YYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIF 202
            V       +S   +K+     YL     +L  +   K   +P+ +VLKA+   +  E+ 
Sbjct: 220 SVTSSTEATKSKTVIKMENEKIYL-----QLNIFTTPK---IPIMVVLKAMGMESIQEVV 271

Query: 203 NHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGL 262
             +    D +Y    GA+  P + E  K          + T+ Q L+++    +      
Sbjct: 272 QMVG--RDPRY----GALLLPSIEECAK--------EKIYTQEQALEYLETKVKKFQFAS 317

Query: 263 QSESYYAVAETVIRDYIF----VHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQN 318
                   A  ++RD       V+ N+ + K   +  M++++   +      D+ D + N
Sbjct: 318 APPEKEGRALGILRDVFLANVPVYKNNFHPKCIYVAVMMRRMMDAILSKDAMDDKDYVGN 377

Query: 319 QEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGK--KFDFFNLANIKKVMEKNPSK 376
           + + L G LI++  ++  +  + + KK I   +  + +  +FDF    N         S 
Sbjct: 378 KRLELSGQLISLLFEDLFKTMVSEVKKTIDKLLGKHSRSSRFDFSQHLN---------SN 428

Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
            I   +E  L TG    +       R G +    RL+F+  +     V     F   R  
Sbjct: 429 IISFGLERTLSTGNWDVKRF--RMHRKGMSQVLARLSFISTMGHVTRV--SPQFEKSRKV 484

Query: 437 S-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVAS 474
           S  R L P  WG LCP  TP+GE CGL+ ++     V +
Sbjct: 485 SGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTT 523


>gi|356518213|ref|XP_003527775.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Glycine
            max]
          Length = 1205

 Score =  342 bits (876), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 309/1112 (27%), Positives = 500/1112 (44%), Gaps = 165/1112 (14%)

Query: 71   FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVF---RSVILPK---Q 124
             G+ PVM+K+  C ++ A+ +      ++  + GGYFI+ G E+ F     + L +    
Sbjct: 197  IGRLPVMVKSDLCWMKEAEKE------DDEFDHGGYFIVKGAEKTFIAQEQLYLKRLWVM 250

Query: 125  NYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLL 184
            N P  M+    + +R       +VI+ V   +         + NG + L  +    E  +
Sbjct: 251  NSPGWMIAYKSQMKR-----NRMVIKLVGNSRGE------EVENGDMSLAVYFLSVE--V 297

Query: 185  PVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVK-IILAEVQDLSLTT 243
            PV ++  AL  ++D EI + + C  D+                R++ I+ A V+D     
Sbjct: 298  PVWVLFFALGVSSDKEIVDLIGCGNDDV---------------RIQNILFASVRDADEKC 342

Query: 244  -RLQCLQHIGEHFQPVIDGLQ---SESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQK 299
               +  +H  ++ +  +  +Q   SES     E     Y+F  ++  N K   L +M++ 
Sbjct: 343  GAFRRGRHAVQYLEKCVKSVQFPPSESMQECLEM----YVFPGISGLNRKARFLAYMVKG 398

Query: 300  LFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFD 359
            L          DN D  +N+ + L   L+   LK  +    ++  K +Q          D
Sbjct: 399  LLLAYTGRRKCDNRDDFRNKRLELASELLDRELKVHIAHARKRMAKALQR---------D 449

Query: 360  FFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFIS 419
             +   +++ +     +  I   ++    TG   +     +++ +G      R N L+ ++
Sbjct: 450  LYGDRDVRPIEHYLDASIITNGLQRAFSTGAW-SHPYKRMERISGVVANVGRTNPLQTMA 508

Query: 420  FFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSR 479
              R   +   + G +    R   P  WG +C + TPDGE CGL+ ++  T  V++     
Sbjct: 509  ELRRARQQVQYTG-KVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAVTGLVST----- 562

Query: 480  GNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLS---VLLDGRVVGVIPSSEIEK 536
                D S +   IL  L+  GM     +LV      + +   VLL+G  VGV P S    
Sbjct: 563  ----DVSAVSEYILPKLLDCGM----EELVDDTSTHLGNKDKVLLNGDWVGVCPDS--SS 612

Query: 537  VVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP---------VRN 587
             VA LR  +    + +P  +E+         +   + +++   + +RP         ++ 
Sbjct: 613  FVAELRSRR--RRNELPHQVEI-----KRDQSQHEVRIYSDAGRILRPLLVVGNLLKIKG 665

Query: 588  ISLPSEESQN------IELIGPFEQ----VFMEIRCPDGGDGGRRNAFPATHEEIHPTGM 637
                    Q+      IELIGP E+        +    G +G R   +  TH E+  + +
Sbjct: 666  FKSDCNSFQSLLDKGVIELIGPEEEEDCCTAWGVEYLFGKEGKRSVKY--THCELDMSFL 723

Query: 638  LSVVANLTPYSDHNQSPRNMYQCQM-AKQTMGFSVQALKFRADQKLYHLQTPQTPIVRT- 695
            L +  +L P+++H+ + R +YQ Q  + Q +GFS      R D   + L  PQ P+ RT 
Sbjct: 724  LGLSCSLVPFANHDHARRVLYQSQKHSSQAIGFSTTNPNIRVDTLSHQLHYPQKPLFRTM 783

Query: 696  ---------NTYTKYGIDEYP------TGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMC 740
                     N+  +  I + P       G NAIVAV  + GY+ ED++++N++S+ RGM 
Sbjct: 784  ASDCLGKPDNSLGQNKISKIPPKAEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLQRGMF 843

Query: 741  ---HGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSV--IDSDGLPYVGQMIHPGE 795
               H + Y++E ID  +  +K  + + +    K    +  V  +D DG PYVG  +  G+
Sbjct: 844  RSEHIRSYKSE-IDNKESSDKKRKPEDIVNFAKLQSKIGRVDSLDDDGFPYVGANLQSGD 902

Query: 796  PYCSIYDKTTNSWRTNS--RKGSESVFVDYVAVDMKNS-KNLPQKANIRFRHTRNPIIGD 852
                I  K   S   NS   K +E  +V  V +   +  KN    A +  R  R+P++GD
Sbjct: 903  ---IIIGKGAESGADNSVKLKHTERGYVQKVVLSSNDEGKNF---AVVSLRQVRSPVLGD 956

Query: 853  KFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSL 912
            KFSS HGQKGV   L    + PF+   G+ PD++INPHAFPSR T   LLE+   KG + 
Sbjct: 957  KFSSMHGQKGVLGFLESQENFPFT-RQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAC 1015

Query: 913  HGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELT 972
             G    ATPF               S   VD + E L   GF+  G E +Y+G  G  + 
Sbjct: 1016 GGILRQATPF---------------STPSVDAITEQLHRAGFSRWGNERVYNGRTGEMVR 1060

Query: 973  CEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHG 1032
              IF+GP +YQRL HM  DK + R+TG +  +TRQP+  RKR GGI+FGEMERD L+AHG
Sbjct: 1061 SLIFMGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHG 1120

Query: 1033 AAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHAC 1092
            A+  L++RL T SD     +CS C +V            +R + G    R P    C  C
Sbjct: 1121 ASANLYERLFTLSDSSQIHICSKCKNVANVI--------LRPVSGGRKIRGP---YCRHC 1169

Query: 1093 QTSKGMETVAMPYVFRYLAAELAAMNIKITLQ 1124
            +++  +    +PY  + L  EL +M I +  +
Sbjct: 1170 ESADDIVVAHVPYGAKLLCQELFSMGINLKFE 1201


>gi|284174418|ref|ZP_06388387.1| DNA-directed RNA polymerase subunit B [Sulfolobus solfataricus 98/2]
 gi|384433685|ref|YP_005643043.1| DNA-directed RNA polymerase subunit B [Sulfolobus solfataricus 98/2]
 gi|167744883|pdb|2PMZ|B Chain B, Archaeal Rna Polymerase From Sulfolobus Solfataricus
 gi|167744894|pdb|2PMZ|R Chain R, Archaeal Rna Polymerase From Sulfolobus Solfataricus
 gi|239782145|pdb|3HKZ|B Chain B, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
 gi|239782158|pdb|3HKZ|J Chain J, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
 gi|261601839|gb|ACX91442.1| DNA-directed RNA polymerase subunit B [Sulfolobus solfataricus 98/2]
          Length = 1124

 Score =  342 bits (876), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 305/1108 (27%), Positives = 485/1108 (43%), Gaps = 149/1108 (13%)

Query: 67   ERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNY 126
            E    G  P+MLK+    +      KL+ + E+  + GGYFI+NG ERV    I+ +++ 
Sbjct: 112  EEVYIGDLPIMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVNGSERV----IVTQEDL 167

Query: 127  PMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGF-WLQGKEYLLP 185
              + V           T  A +I      +  VT++   L +G+  + F  + GK   +P
Sbjct: 168  APNRVLVDTGKTGSNITHTAKIISSTAGYRVPVTIE--RLKDGTFHVSFPAVPGK---IP 222

Query: 186  VGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRL 245
              I+++AL    D +I        D + + E      P + +   I  A V D       
Sbjct: 223  FVILMRALGILTDRDIV--YAVSLDPEVQNEL----FPSLEQASSI--ANVDD------- 267

Query: 246  QCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQKLF 301
              L  IG     V  G + E+    A+ +I  Y   HL     D   K   L + + K+ 
Sbjct: 268  -ALDFIGSR---VAIGQKRENRIEKAQQIIDKYFLPHLGTSAEDRKKKAYYLAYAISKVI 323

Query: 302  SLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFF 361
             L       D+ D   N+ + L G L     +   + +++     ++   +  G+K    
Sbjct: 324  ELYLGRREPDDKDHYANKRLRLAGDLFASLFRVAFKAFVKDLTYQLEKS-KVRGRKLALK 382

Query: 362  NLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFF 421
             L     V E+                 R A  TG  +  R G +   +R N+L  +S  
Sbjct: 383  ALVRPDIVTERI----------------RHALATGNWVGGRTGVSQLLDRTNWLSMLSHL 426

Query: 422  RAVHRGASFA-GLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRG 480
            R V   +S A G      R L    WG +CP  TP+G   GL+ ++    ++A   + R 
Sbjct: 427  RRVI--SSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNLALMAQIAVGINER- 483

Query: 481  NIRDFSKMRTSILRVLIGVGMIPS---LPKLVKSGPP-----AVLSVLLDGRVVGVIPSS 532
                       + + L  +G++P    + ++ + G           V+L+GR++G     
Sbjct: 484  ----------IVEKTLYEMGVVPVEEVIRRVTEGGEDQNEYLKWSKVILNGRLIGYYQDG 533

Query: 533  -EIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISL- 590
             E+   +   RR        I D++ VG++          +++     +  RP+  +S  
Sbjct: 534  GELANKIRERRR-----KGEISDEVNVGHIVTDFINE---VHVNCDSGRVRRPLIIVSNG 585

Query: 591  -PSEESQNIELIGP----FEQVFMEIRCPDGGDGGRRNAFPA----------THEEIHPT 635
             P    ++IE +      F+ +  + +          NA+ A          TH EI   
Sbjct: 586  NPLVTIEDIEKLESGAITFDDLVRQGKIEYLDAEEEENAYVALEPNDLTPDHTHLEIWSP 645

Query: 636  GMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRT 695
             +L + A++ PY +HNQSPRN YQ  MAKQ +G      + R D + + L  PQ P+V+T
Sbjct: 646  AILGITASIIPYPEHNQSPRNTYQSAMAKQALGLYAANYQLRTDTRAHLLHYPQRPLVQT 705

Query: 696  NTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG---QIYQTETID- 751
                  G    P G NAI+AV+++TGY+MED++I+N+SSV+RGM      ++Y TE +  
Sbjct: 706  RALDIIGYTNRPAGNNAILAVMSFTGYNMEDSIIMNRSSVERGMYRSTFFRLYSTEEVKY 765

Query: 752  ---------LSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYD 802
                     + + G +  +G++ +R  +D   +   ++  G   +   + P        +
Sbjct: 766  PGGQEDKIVMPEAGVRGYKGKEYYRLLEDNGVVSPEVEVKGGDVLIGKVSPPRFLQEFKE 825

Query: 803  KTTNSWRTNSR---KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHG 859
             +    + ++    +  E   VD V +      N  +   +R R  R P IGDKF+SRHG
Sbjct: 826  LSPEQAKRDTSIVTRHGEMGIVDLVLITETAEGN--KLVKVRVRDLRIPTIGDKFASRHG 883

Query: 860  QKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDA 919
            QKGV   L P +DMP++ V G+ PD+I+NPHA PSRMT+  ++E +A K  +L G  +DA
Sbjct: 884  QKGVIGMLIPQVDMPYT-VKGVVPDIILNPHALPSRMTLGQIMEGIAGKYAALSGNIVDA 942

Query: 920  TPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGP 979
            TPF                K+ +++L   +   G+     EV+Y G  G ++   I+ G 
Sbjct: 943  TPF---------------YKTPIEQLQNEILRYGYLPDATEVVYDGRTGQKIKSRIYFGV 987

Query: 980  VYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHD 1039
            VYYQ+L HMV+DK   R+ G +  +TRQP +GR R GG+RFGEMERD L+  G A LL D
Sbjct: 988  VYYQKLHHMVADKLHARARGPVQILTRQPTEGRAREGGLRFGEMERDCLIGFGTAMLLKD 1047

Query: 1040 RLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGME 1099
            RL   SD  +  VC  CG                 IG     +   K  C        + 
Sbjct: 1048 RLLDNSDRTMIYVCDQCGY----------------IGWY--DKNKNKYVCPIHGDKSNLF 1089

Query: 1100 TVAMPYVFRYLAAELAAMNIKITLQLGD 1127
             V + Y F+ L  EL +M I   L L D
Sbjct: 1090 PVTVSYAFKLLIQELMSMIISPRLVLED 1117


>gi|237823479|pdb|2WAQ|B Chain B, The Complete Structure Of The Archaeal 13-Subunit Dna-
            Directed Rna Polymerase
 gi|237823491|pdb|2WB1|B Chain B, The Complete Structure Of The Archaeal 13-Subunit Dna-
            Directed Rna Polymerase
 gi|237823507|pdb|2WB1|R Chain R, The Complete Structure Of The Archaeal 13-Subunit Dna-
            Directed Rna Polymerase
 gi|323462789|pdb|2Y0S|B Chain B, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
            P21 Space Group
 gi|323462805|pdb|2Y0S|R Chain R, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
            P21 Space Group
 gi|400260743|pdb|4AYB|B Chain B, Rnap At 3.2ang
 gi|400260760|pdb|4B1O|B Chain B, Archaeal Rnap-Dna Binary Complex At 4.32ang
 gi|400260780|pdb|4B1P|R Chain R, Archaeal Rnap-Dna Binary Complex At 4.32ang
 gi|219814433|gb|ACL36490.1| RNA polymerase subunit 2 [Sulfolobus shibatae B12]
          Length = 1131

 Score =  342 bits (876), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 306/1108 (27%), Positives = 485/1108 (43%), Gaps = 149/1108 (13%)

Query: 67   ERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNY 126
            E    G  P+MLK+    +      KL+ + E+  + GGYFI+NG ERV    I+ +++ 
Sbjct: 115  EEVYIGDLPIMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVNGSERV----IVTQEDL 170

Query: 127  PMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGF-WLQGKEYLLP 185
              + V           T  A +I      +  VT++   L +G+  + F  + GK   +P
Sbjct: 171  APNRVLVDTGKTGSNITHTAKIISSTAGYRVPVTIE--RLKDGTFHVSFPAVPGK---IP 225

Query: 186  VGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRL 245
              I+++AL    D +I        D + + E      P + +   I  A V D       
Sbjct: 226  FVILMRALGILTDRDIV--YAVSLDPEIQNEL----FPSLEQASSI--ANVDD------- 270

Query: 246  QCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQKLF 301
              L  IG     V  G + E+    A+ +I  Y   HL    +D   K   L + + K+ 
Sbjct: 271  -ALDFIGSR---VAIGQKRENRIEKAQQIIDKYFLPHLGTSADDRRKKAYYLAYAISKVI 326

Query: 302  SLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFF 361
             L       D+ D   N+ + L G L     +   + +++     ++   +  G+K    
Sbjct: 327  ELYLGRREPDDKDHYANKRLRLAGDLFASLFRVAFKAFVKDLTYQLEKS-KVRGRKLALK 385

Query: 362  NLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFF 421
             L     V E+                 R A  TG  +  R G +   +R N+L  +S  
Sbjct: 386  ALVRPDIVTERI----------------RHALATGNWVGGRTGVSQLLDRTNWLSMLSHL 429

Query: 422  RAVHRGASFA-GLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRG 480
            R V   +S A G      R L    WG +CP  TP+G   GL+ ++    ++A   + + 
Sbjct: 430  RRVI--SSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNLALMAQIAVGINEK- 486

Query: 481  NIRDFSKMRTSILRVLIGVGMIPS---LPKLVKSGPP-----AVLSVLLDGRVVGVI-PS 531
                       + + L  +G++P    + ++ + G           V+L+GR+VG     
Sbjct: 487  ----------IVEKTLYEMGVVPVEEVIRRVTEGGEDQNEYLKWSKVILNGRLVGYYRDG 536

Query: 532  SEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISL- 590
             E+ K +   RR        I D++ VG++          +++     +  RP+  +S  
Sbjct: 537  EELAKKIRERRR-----KGEISDEVNVGHIVTDFINE---VHVNCDSGRVRRPLIIVSNG 588

Query: 591  -PSEESQNIELIGP----FEQVFMEIRCPDGGDGGRRNAFPA----------THEEIHPT 635
             P    ++IE +      F+ +  + +          NA+ A          TH EI   
Sbjct: 589  NPLVTREDIEKLDSGSITFDDLVRQGKIEYLDAEEEENAYVALEPSDLTPEHTHLEIWSP 648

Query: 636  GMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRT 695
             +L + A++ PY +HNQSPRN YQ  MAKQ +G      + R D + + L  PQ P+V+T
Sbjct: 649  AILGITASIIPYPEHNQSPRNTYQSAMAKQALGLYAANYQLRTDTRAHLLHYPQRPLVQT 708

Query: 696  NTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG---QIYQTETID- 751
                  G    P G NAI+AV+++TGY+MED++I+N+SSV+RGM      ++Y TE +  
Sbjct: 709  RALDIIGYTNRPAGNNAILAVISFTGYNMEDSIIMNRSSVERGMYRSTFFRLYSTEEVKY 768

Query: 752  ---------LSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYD 802
                     + + G +  +G++ +R  +D   +   ++  G   +   + P        +
Sbjct: 769  PGGQEDKIVMPEPGVRGYKGKEYYRLLEDNGVVSPEVEVKGGDVLIGKVSPPRFLQEFKE 828

Query: 803  KTTNSWRTNSR---KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHG 859
             +    + ++    +  E   VD V +      N  +   +R R  R P IGDKF+SRHG
Sbjct: 829  LSPEQAKRDTSIVTRHGEMGIVDLVLITETAEGN--KLVKVRVRDLRIPSIGDKFASRHG 886

Query: 860  QKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDA 919
            QKGV   L P +DMP++ V G+ PD+I+NPHA PSRMT+  ++E +A K  +L G  +DA
Sbjct: 887  QKGVIGMLIPQVDMPYT-VKGVVPDVILNPHALPSRMTLGQIMEGIAGKYAALSGNIVDA 945

Query: 920  TPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGP 979
            TPF                K+ +++L   +   G+     EV Y G  G ++   I+ G 
Sbjct: 946  TPF---------------YKTPIEQLQNEILKYGYLPDATEVTYDGRTGQKIKSRIYFGV 990

Query: 980  VYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHD 1039
            VYYQ+L HMV+DK   R+ G +  +TRQP +GR R GG+RFGEMERD L+  G A LL D
Sbjct: 991  VYYQKLHHMVADKIHARARGPVQILTRQPTEGRAREGGLRFGEMERDCLIGFGTAMLLKD 1050

Query: 1040 RLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGME 1099
            RL   SD     VC  CG                 IG     +   K  C        + 
Sbjct: 1051 RLLDNSDRTTIYVCDQCGY----------------IGWY--DKNKNKYVCPIHGDKSNLF 1092

Query: 1100 TVAMPYVFRYLAAELAAMNIKITLQLGD 1127
             V + Y F+ L  EL +M I   L L D
Sbjct: 1093 PVTVSYAFKLLIQELMSMIISPRLILED 1120


>gi|443917907|gb|ELU38513.1| DNA-directed RNA polymerase III subunit [Rhizoctonia solani AG-1 IA]
          Length = 1248

 Score =  342 bits (876), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 320/1218 (26%), Positives = 517/1218 (42%), Gaps = 217/1218 (17%)

Query: 12   LRELVRHHIESFDYMLDEGLSEM---------------------------------FD-- 36
            ++ LV+ HI+SF+Y +D  L+ +                                 FD  
Sbjct: 90   VKGLVKQHIDSFNYFVDVDLANILKANNKVLSDVDPKFWLKYTGIHVGMPTRNDDSFDKS 149

Query: 37   ----HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQK 92
                 CR    +Y   +  DV  QY      V R+    G+ P+ML++ +C L G     
Sbjct: 150  VTPHECRLRDTTYAATITVDV--QYTRGNVIVRRKGVPIGRLPIMLRSNKCVLAGQSEAS 207

Query: 93   LVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCV 152
            L  + E   + GGYFI+ G E+    VIL ++        S  R   E    K +V   V
Sbjct: 208  LARMTECPLDPGGYFIVKGTEK----VILVQEQL------SKNRIIVETDPVKGIVQASV 257

Query: 153  RKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEK 212
                     K Y L+  + R+          +PV I LKA+    D EI   L C    +
Sbjct: 258  TSSTHERKSKTYVLMKKN-RIYLRHNSINEDIPVCIALKAMGIQADKEIL--LLCAGTTE 314

Query: 213  YKKEKGAVGSPLVSERVKIILAEVQDLSLT---TRLQCLQHIGEHFQPVIDGLQS----- 264
              K   A                ++D +L    T  Q L++IG   +    G Q+     
Sbjct: 315  AHKSAFA--------------PNLEDCALAGVFTTQQALEYIGSRVKVTRRGFQAGPKRP 360

Query: 265  ---ESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEI 321
               E+  A+A T++  ++ V   D   K   +  M +++   +    + D+ D + N+ +
Sbjct: 361  VWEEAMEALA-TIVLAHVEVKGMDFKHKAIYIATMTRRVLMAMADEKLVDDRDYVGNKRL 419

Query: 322  LLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTS 381
             L G L+++  ++                     K F+    ++I KV++K        +
Sbjct: 420  ELAGQLLSLLFEDIF-------------------KTFNQNLKSSIDKVLKKPSRTSEFDA 460

Query: 382  IETMLKTGRLATQTGLDLQQRAGYTV---QAERLNFLRFISFFRAVHRGASFAGLRTTSV 438
             +++L    L T   +       +++   + ER      +S +  ++  + ++      +
Sbjct: 461  YQSLLYQSDLITSGFVRAISTGNWSLKRFKMERAGVTHVLSRYVKLNLASVYSSSSVPPL 520

Query: 439  ------RKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSI 492
                  R L P  WG LC   TP+GE CGL+ ++     + +  +              I
Sbjct: 521  DSVSGPRALQPSQWGMLCTSDTPEGEACGLVKNLALMTHITTDVEEE-----------PI 569

Query: 493  LRVLIGVGMIPSLPKLVKSGP----PAVLSVLLDGRVVGV--IPSSEIEKVVAHLRRLKV 546
             +++  +G+         +G     P    V ++G +VG+   P+    + VA+ R+L+ 
Sbjct: 570  KKIVYMLGVEDDTDITFSTGAEIYSPHTFVVNVNGSIVGLTRFPA----RFVANFRKLRR 625

Query: 547  SAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNI--SLPSEESQNIELIG-- 602
            S    I +     ++ + +   +  +++ +   +  RP+  +    P   +++I L+   
Sbjct: 626  SGR--ISE-----FISVYINHHHHTVHIASDGGRICRPMIIVENERPRVRTEHINLLKRG 678

Query: 603  --PFEQVFMEIRCPDGGDGGRRNAF----------PAT-HEEIHPTGMLSVVANLTPYSD 649
               F+  F++    +  D    N            P+T H EI P  +L  VA L PY  
Sbjct: 679  VVTFDD-FLKKGSIEYLDVNEENDSHIALYESSIEPSTTHLEIEPFTILGAVAGLIPYPH 737

Query: 650  HNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTG 709
            HNQSPRN YQC M KQ++G        R D  LY    PQ P+V+T T    G D  P G
Sbjct: 738  HNQSPRNTYQCAMGKQSIGAIAYNQLNRIDTLLYLSVYPQQPMVKTKTIELIGYDRLPAG 797

Query: 710  TNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRR- 768
             NA VAV++Y+GYD+EDA+ILNK          +++    +    D +  DR     R  
Sbjct: 798  QNATVAVMSYSGYDIEDALILNK-------LRSRLWTMPGVQEERDTHPFDRLADAPREA 850

Query: 769  NKDAKSLHSVIDSDGLPYVGQMIHPGEPYC------SIYDKTTN---------SWRTN-- 811
            +   +  + +I +DG+  VG+ + PG+ Y       +  D T N         S+R    
Sbjct: 851  DGSVQKRYDIIQADGIAGVGERVDPGDVYVNKQSPINANDNTFNTGEGASASISYRNTPM 910

Query: 812  SRKGSESVFVDYVAV-DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPD 870
            S K   + ++D V + D  N + L     +  R TR P +GDKFSSRHGQKGVC  +   
Sbjct: 911  SYKSPMAGYIDKVMLTDTDNDQTL---VKVLLRQTRRPELGDKFSSRHGQKGVCGLIVNQ 967

Query: 871  IDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANS---VK 927
             DMPF+   G+ PD I+NPH FPSRMT+  ++E +A K        +   P  N+   V 
Sbjct: 968  EDMPFND-QGINPDTIMNPHGFPSRMTVGKMIELLAGKVSGCMRFTISPMPHQNTKAGVL 1026

Query: 928  KTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQR--- 984
              +   GT    S V+++  +L   GF+Y G ++L SG+ G  + C ++ GP+YYQ    
Sbjct: 1027 SGSLQYGTAFGGSKVEDMSRILIDYGFSYAGKDMLTSGITGEPMECYVYFGPIYYQLRSN 1086

Query: 985  ---LRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRL 1041
               + HMV DK   R+ G    +TRQP +GR R GG+R GEMERD L+ +GA  LL +RL
Sbjct: 1087 RNFIEHMVMDKMHARAKGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGATQLLLERL 1146

Query: 1042 HTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETV 1101
               SD    + C  CG +    +                        C  C++SK +  +
Sbjct: 1147 MISSDAFEINACETCGLMGYNGW------------------------CPYCKSSKKVAKL 1182

Query: 1102 AMPYVFRYLAAELAAMNI 1119
             +PY  + L  EL  + I
Sbjct: 1183 TIPYAAKLLFQELTCVGI 1200


>gi|284998387|ref|YP_003420155.1| hypothetical protein [Sulfolobus islandicus L.D.8.5]
 gi|284446283|gb|ADB87785.1| conserved hypothetical protein [Sulfolobus islandicus L.D.8.5]
          Length = 1131

 Score =  341 bits (875), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 305/1108 (27%), Positives = 483/1108 (43%), Gaps = 149/1108 (13%)

Query: 67   ERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNY 126
            E    G  P+MLK+    +      KL+ + E+  + GGYFI+NG ERV    I+ +++ 
Sbjct: 115  EEVYIGDLPIMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVNGSERV----IVTQEDL 170

Query: 127  PMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGF-WLQGKEYLLP 185
              + V           T  A +I      +  VT++   L +G+  + F  + GK   +P
Sbjct: 171  APNRVLVDTGKTGSNITHTAKIISSTAGYRVPVTIE--RLKDGTFHVSFPAVPGK---IP 225

Query: 186  VGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRL 245
              I+++AL    D +I        D + + E      P + +   I  A V D       
Sbjct: 226  FVILMRALGILTDRDIV--YAVSLDPEIQNEL----FPSLEQASSI--ANVDD------- 270

Query: 246  QCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQKLF 301
              L  IG     V  G + E+    A+ +I  Y   HL    +D   K   L + + K+ 
Sbjct: 271  -ALDFIGSR---VAIGQKRENRIEKAQQIIDKYFLPHLGTSADDRRKKAYYLAYAISKVI 326

Query: 302  SLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFF 361
             L       D+ D   N+ + L G L     +   + +++     ++   +  G+K    
Sbjct: 327  ELYLGRREPDDKDHYANKRLRLAGDLFASLFRVAFKAFVKDLTYQLEKS-KVRGRKLALK 385

Query: 362  NLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFF 421
             L     V E+                 R A  TG  +  R G +   +R N+L  +S  
Sbjct: 386  ALVRPDIVTERI----------------RHALATGNWVGGRTGVSQLLDRTNWLSMLSHL 429

Query: 422  RAVHRGASFA-GLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRG 480
            R V   +S A G      R L    WG +CP  TP+G   GL+ ++    ++A   + R 
Sbjct: 430  RRVI--SSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNLALMAQIAVGINER- 486

Query: 481  NIRDFSKMRTSILRVLIGVGMIPS---LPKLVKSGPP-----AVLSVLLDGRVVGVI-PS 531
                       + + L  +G++P    + ++ + G           V+L+GR+VG     
Sbjct: 487  ----------IVEKTLYEMGVVPVEEVIRRVTEGGEDQNEYLKWSKVILNGRLVGYYRDG 536

Query: 532  SEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISL- 590
             E+ K +   RR        I D++ VG++          +++     +  RP+  +S  
Sbjct: 537  EELAKKIRERRR-----NGEISDEVNVGHIVTDFINE---VHVNCDSGRVRRPLIIVSNG 588

Query: 591  -PSEESQNIELIGPFEQVF--------MEIRCPDGGDGGRRNAFPA------THEEIHPT 635
             P    ++IE +      F        +E    +  + G     P+      TH EI   
Sbjct: 589  NPLVTREDIEKLDSGSITFDDLVRQGKIEYLDAEEEENGYVALEPSDLTPEHTHLEIWSP 648

Query: 636  GMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRT 695
             +L + A++ PY +HNQSPRN YQ  MAKQ +G      + R D + + L  PQ P+V+T
Sbjct: 649  AILGITASIIPYPEHNQSPRNTYQSAMAKQALGLYAANYQLRTDTRAHLLHYPQRPLVQT 708

Query: 696  NTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG---QIYQTETID- 751
                  G    P G NAI+AV+++TGY+MED++I+N+SSV+RGM      ++Y TE +  
Sbjct: 709  RALDIIGYTNRPAGNNAILAVISFTGYNMEDSIIMNRSSVERGMYRSTFFRLYSTEEVKY 768

Query: 752  ---------LSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYD 802
                     + + G +  +G++ +R  +D   +   ++  G   +   + P        +
Sbjct: 769  PGGQEDKIVMPEPGVRGYKGKEYYRLLEDNGVVSPEVEVKGGDVLIGKVSPPRFLQEFKE 828

Query: 803  KTTNSWRTNSR---KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHG 859
             +    + ++    +  E   VD V +      N  +   +R R  R P IGDKF+SRHG
Sbjct: 829  LSPEQAKRDTSIVTRHGEMGIVDLVLITETAEGN--KLVKVRVRDLRVPSIGDKFASRHG 886

Query: 860  QKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDA 919
            QKGV   L P +DMP++ V G+ PD+I+NPHA PSRMT+  ++E +A K  +L G  +DA
Sbjct: 887  QKGVIGMLIPQVDMPYT-VKGVVPDIILNPHALPSRMTLGQIMEGIAGKYAALSGNIVDA 945

Query: 920  TPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGP 979
            TPF                K+ +++L   +   G+     EV Y G  G ++   I+ G 
Sbjct: 946  TPF---------------YKTPIEQLQNEILKYGYLPDATEVTYDGRSGQKIKSRIYFGV 990

Query: 980  VYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHD 1039
            VYYQ+L HMV+DK   R+ G +  +TRQP +GR R GG+RFGEMERD L+  G A LL D
Sbjct: 991  VYYQKLHHMVADKIHARARGPVQILTRQPTEGRAREGGLRFGEMERDCLIGFGTAMLLKD 1050

Query: 1040 RLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGME 1099
            RL   SD     VC  CG +                      +   K  C        + 
Sbjct: 1051 RLLDNSDRTTIYVCDQCGYIGWYD------------------KNKNKYICPIHGDKSNLF 1092

Query: 1100 TVAMPYVFRYLAAELAAMNIKITLQLGD 1127
             V + Y F+ L  EL +M I   L L D
Sbjct: 1093 PVTVSYAFKLLIQELMSMIISPRLILED 1120


>gi|399950027|gb|AFP65683.1| second-largest subunit of RNA polymerase III [Chroomonas
            mesostigmatica CCMP1168]
          Length = 1096

 Score =  341 bits (875), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 299/1056 (28%), Positives = 467/1056 (44%), Gaps = 146/1056 (13%)

Query: 39   RQAKISYTGKLMADVEFQYLDAGSPVVRER------FNFGQFPVMLKTRRCHLQGADSQK 92
            R   ++Y   L  D+ F         + +R      FN G+ P+MLK+ +C L G + ++
Sbjct: 81   RIRDLTYCASLFIDISF--------TIEKRIKYCFDFNLGKIPIMLKSNKCALFGKNEEQ 132

Query: 93   LVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCV 152
            L+SLKE A + GGYFI+ G ER+    IL ++    + + S   D+R             
Sbjct: 133  LISLKECALDPGGYFIIKGNERI----ILIQEKIASNRI-SIETDKRGNVCAHVDFSNYG 187

Query: 153  RKDQSSVTLK---LYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
            +K+++++ +K   LY+      R  ++ +     +P+ I+  A+   N  +I + +   Y
Sbjct: 188  KKNRNTIVMKNKKLYF------RNNYFFED----IPLFIIFVAIGLDNQHDIIDLIGNRY 237

Query: 210  D------EKYKKEKGAVGSP----LVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV- 258
            +      ++  K +G   +      V +R  + + + +D S          I + F+ + 
Sbjct: 238  ENILQLSKQEAKHEGIASTNQAIRYVIQRFDLKIMKKKDTSTDYNTNHPSTIKKIFEAIV 297

Query: 259  ---IDGLQSESYYAVAETVIRDYIFVHLNDNN--DKFNLLIFMLQKLFSLVDHTSVSDNP 313
               I GL+S S                 ND N  +K  +L  M++++F  +D   + D+ 
Sbjct: 298  FRNILGLKSTS---------------EKNDKNSEEKIIILAMMVRRIFLSLDQPMIVDSK 342

Query: 314  DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIEN-NGKKFDFFNLANIKKVMEK 372
            D   N+   L G L+++      ED  RK  K  +   E    KK +  N     +++  
Sbjct: 343  DYYGNKRFELAGKLVSVLF----EDLFRKTNKEFERYFEMVQKKKKETLN----HEIVPG 394

Query: 373  NPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAG 432
              S  I T  E    TG    +      ++ G T    RL+F+  +S    ++   +   
Sbjct: 395  IRSDLITTGFEYAFSTGNWMVKPYQ--LEKNGITQLLSRLSFISTLSMLTKIN-SQNEKI 451

Query: 433  LRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSI 492
             +    R L    WG +CP  TP+GE CGL+  +     + +   S+  +    K+    
Sbjct: 452  RKVRGPRSLQTSQWGMVCPTETPEGESCGLVKDLAILAHITTAQKSKYLLEICFKLGAET 511

Query: 493  LRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVI 552
              V   +  I +    VK        + L+GR VG    S+    +   R L+ S     
Sbjct: 512  F-VFSKISSIKTSSDFVK--------IFLNGRYVGF--HSQPSTFLYAFRSLRRSG---- 556

Query: 553  PDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIE--LIGPFEQVFME 610
               +   Y+ +        + + +   +  RP   ++    +  N E  L+   E +FME
Sbjct: 557  ---MINKYISIYWDTFSSEIKILSDSGRICRPFMVVNSGKCKINNFEKSLLKK-EALFME 612

Query: 611  IRCPDG-----GDGGRRNAF----------PATHEEIHPTGMLSVVANLTPYSDHNQSPR 655
                 G         + NAF           ++H EI P  +L +  NL P+SDHNQSPR
Sbjct: 613  NLSRKGFVEFLDVNEQNNAFISHDLKSLKVRSSHLEITPEIILGICGNLIPFSDHNQSPR 672

Query: 656  NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
            N YQC M KQ +G        R D  L  L  PQ P+VRT T    G +   +G N  V 
Sbjct: 673  NTYQCAMGKQAIGSISYNQNQRCDTVLSILLYPQKPLVRTKTVYFSGNNRLTSGINTCVC 732

Query: 716  VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETI---DLSDDGNKVDRGQKLFRRNKDA 772
            +++++GYD+ED++I+N+SS +RG+    + +   I   D   +   +    K F  NK  
Sbjct: 733  IMSFSGYDIEDSIIMNRSSTERGLFRSFVMRKHKILVKDFLSEKKSLTTTNKKFLNNK-- 790

Query: 773  KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSK 832
                    SD +  VG +        S YD         S K      V+ + +    S 
Sbjct: 791  -------KSDNIQKVGDLF-SNVTSNSFYDLGQIILSQVSHKEISGEMVEKIII----SS 838

Query: 833  NLPQK--ANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPH 890
            N  +   A +  R  R P +GDKFSSRHGQKG+C  L    D+PFS   G+ PDLI+NPH
Sbjct: 839  NFRELFFAKLVIRQIRKPEVGDKFSSRHGQKGICGFLCFQKDIPFSN-DGVIPDLIMNPH 897

Query: 891  AFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLR 950
             FPSRMTI  + E +  K  +  G F D T F    KK                +   LR
Sbjct: 898  GFPSRMTIGKMFELLNGKNSAYSGNFKDGTAFIEPKKKA---------------VDRNLR 942

Query: 951  TCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIK 1010
              GFN  G +  +SG+ G  L  EIF GPV+YQ+L+HMV DK   R+ G    +T+QPI+
Sbjct: 943  KLGFNSKGNDFFFSGISGQLLKMEIFSGPVFYQKLKHMVKDKIHARTRGPRSPLTKQPIE 1002

Query: 1011 GRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSD 1046
            GR + GG RFGEMERD L+++GA+  + +RL   SD
Sbjct: 1003 GRSKEGGQRFGEMERDCLISYGASDSIIERLIFSSD 1038


>gi|327284651|ref|XP_003227050.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like, partial
           [Anolis carolinensis]
          Length = 662

 Score =  341 bits (875), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 189/510 (37%), Positives = 291/510 (57%), Gaps = 32/510 (6%)

Query: 38  CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
           CR  + +Y GKLM DV +        V+++  + G  P+M+K++ C+L G   ++L+   
Sbjct: 103 CRGRRSTYRGKLMVDVSWSVNGIPKGVIKQ--SLGHVPIMVKSKLCNLHGLSPKELIKHH 160

Query: 98  EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
           EE  EMGGYFI+NG+E+V R +I+P++N+P+++++  ++ R  GYT+  + +RCVR++ +
Sbjct: 161 EEQEEMGGYFIINGIEKVMRLIIMPRRNFPLAVIKPKWKSRGHGYTEYGISMRCVREEHT 220

Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
           +V + L+YL NG+V L F  Q + + LP+G VLK LV  +D +IF  L           K
Sbjct: 221 AVNMTLHYLENGTVMLNFIHQKELFFLPLGFVLKGLVGFSDFQIFQELI----------K 270

Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
           G          V  +L  V +    T+ Q L  +G+ F+  ++  +      V E +   
Sbjct: 271 GKEDDTFYKNCVSQMLRMVSEEGCMTQKQALVFLGQRFRVKMNLPEWYPSEQVGEFLFEQ 330

Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
            I +HL    +KF LL  M +KLF+L     + +NPDSL NQE+L  G L  ++LKEK+E
Sbjct: 331 CICIHLKSKAEKFYLLCLMTRKLFTLAKEGCMEENPDSLMNQEVLTSGQLYLMFLKEKME 390

Query: 338 DWLRKGKKLIQDEIENNGKKFDF-FNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
            WL+     I+  ++   +K +  FN   + K++       +   +E +L TG L ++TG
Sbjct: 391 FWLQS----IKITVDKKAQKSNITFNSEGMMKIL--GMGVDLTRMLEYLLATGNLRSRTG 444

Query: 397 LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
           L + Q +G +V A++LNF+R++S FR VHRGA F  +RTT+VRKLLPESWGFLCPVHTPD
Sbjct: 445 LGMLQTSGLSVMADKLNFVRYLSHFRCVHRGADFIKMRTTTVRKLLPESWGFLCPVHTPD 504

Query: 457 GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGP-PA 515
           GEPCGL+NH+T+ C + +           S   TS+  +L  +G+ P+    V + P   
Sbjct: 505 GEPCGLMNHLTAPCEIVTQ----------SLFTTSLPSLLCSLGVTPT--DGVPNQPYSE 552

Query: 516 VLSVLLDGRVVGVIPSSEIEKVVAHLRRLK 545
              V LDG +VG I       +V  LR  K
Sbjct: 553 CYPVTLDGSLVGWIEKDLAPGLVETLRHCK 582



 Score = 51.2 bits (121), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 43/80 (53%), Gaps = 9/80 (11%)

Query: 1044 CSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAM 1103
            CSD  VA VC  CGS+L+     P   +   I         ++  C  C  +  +ETVA+
Sbjct: 591  CSDRSVAHVCVQCGSLLSPLLKPPPVWSATRI---------RQHICTICNRNDTVETVAV 641

Query: 1104 PYVFRYLAAELAAMNIKITL 1123
            PYVFR   AELAA+NIK+ L
Sbjct: 642  PYVFRCFVAELAAINIKVKL 661


>gi|407852465|gb|EKG05946.1| DNA-directed RNA polymerase III subunit, putative [Trypanosoma cruzi]
          Length = 1186

 Score =  341 bits (874), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 308/1112 (27%), Positives = 497/1112 (44%), Gaps = 140/1112 (12%)

Query: 67   ERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNY 126
            +    G+ P+MLK+ RC+LQ  D  +L  L E   + GGYF+++G E+V    ++ ++  
Sbjct: 163  QNMELGRIPIMLKSMRCNLQNKDEDELPRLNECPHDQGGYFVISGTEKV----LIAQERQ 218

Query: 127  PMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLL---NGSVRLGFWLQGKEYL 183
              + V +  R +      K++V   + K ++   L  Y      +G   L   +   + L
Sbjct: 219  AANHVYAFSRQKGLLCEIKSIVEGSLNKPRTLQILMPYKKKGPGHGYENLLCRVAQMDEL 278

Query: 184  LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTT 243
            +P+ ++ +AL   +D EI    T   D K            + E ++  + +   L + T
Sbjct: 279  IPLFVLFRALDMGSDKEILQ--TVVPDLK---------DAAMLEMLRGSMEDASTLQIFT 327

Query: 244  RLQCLQHIGEHF--QPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLF 301
            R + L  IG+    Q   + LQ ++   +   ++  ++ V    +  K   + +M+ +L 
Sbjct: 328  RDEALWFIGKRLGKQDSRENLQRDAQGLLMRDLL-PHMGVDCAADRSKCLFIGYMVHRLL 386

Query: 302  SLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFF 361
             L        + D L ++ I + G L+T  L + L    ++  K + D   N G    F 
Sbjct: 387  LLALGRREDTDRDFLGHKRIDVAGALLTFQLNQFLVQVRKEMVKTVHDYSTNRGGVVSFG 446

Query: 362  NLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFF 421
             + +         S+ I   +   L TG        +++     T+   RL +   +S  
Sbjct: 447  RILH---------SRLITDGLRRCLATGNFGDMKSGNIKTGVAQTLN--RLTYSSSLSNL 495

Query: 422  RAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGN 481
            R +    S A  + T  R L    WG++CPV TP+G   GLL ++   C +     SRG+
Sbjct: 496  RRIQNPIS-ASSKATKPRNLHCTQWGYICPVETPEGGSIGLLKNLALMCLI-----SRGS 549

Query: 482  IRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV------------- 528
              D + +  ++   + G   I  LP L       V  V ++G ++GV             
Sbjct: 550  --DHTGVVQAVQARITGFHSI-DLPGLADV---RVARVFVNGTLIGVHRDPERLLRELRA 603

Query: 529  -IPSSEIEKVVAHLRRLKVSAASVIPDD---------LEVGYVPLSLGGAYPGLYLFTSP 578
                 E+   V+ +R ++     V  D          +E   + L       G+     P
Sbjct: 604  RRRGGELSNEVSIVRDIRDREIRVFSDGGRCLRPLFVVERSRIKLQ----KTGIGELLEP 659

Query: 579  PKFVRPVRNISLPSEESQN-IELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGM 637
             K +   R IS      +  +ELI   E+  + I          +N +  +H E+ P+ +
Sbjct: 660  SKTLGGKREISWNRIIKKGYVELIDCEEEDSLLIAMT--MTEVSKNYY-YSHCEMDPSMI 716

Query: 638  LSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNT 697
            L + A++ PY +HNQSPRN YQ  M KQ MG        R D   + L  PQ P+VRT  
Sbjct: 717  LGICASIIPYPNHNQSPRNTYQSAMGKQAMGIYASNFNMRMDTTAHVLFYPQKPLVRTKA 776

Query: 698  YTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT------ETID 751
             +    ++ P G NA+VA+  Y+GY+ ED++I+++S+V+RG      +++         D
Sbjct: 777  MSYMRSNDLPAGHNAVVAIACYSGYNQEDSIIMSRSAVERGFFRSAFWRSYKATEERKKD 836

Query: 752  LSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGL-----PYVGQMIHPGEPYCSIYDKTTN 806
            + +     DR  K+ R  +   + ++ +D+DGL     P +G  I  G+       K  N
Sbjct: 837  VRETFENPDR--KICRVKR---ADYTKLDADGLIKPGMPVIGGDILVGKTIPISEAKLEN 891

Query: 807  SWRTNSR----------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSS 856
            +   ++R          + SE   V+ V +  +NS N   K  ++ R  + P IGDKF S
Sbjct: 892  AALDDTRLLKRDCSIASRTSEKGVVERVML-TENSGNRFTK--VKIRTIKIPNIGDKFCS 948

Query: 857  RHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKF 916
            RHGQKG     +   DMPF+   G+ PDLIINPHA PSRMT+A L+E++A K     G  
Sbjct: 949  RHGQKGTNGIQFRQEDMPFNR-DGIVPDLIINPHAIPSRMTVAHLIETLAGKVACYKGSE 1007

Query: 917  MDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIF 976
            + ATPF + V               V++ G+ L    F  +G E LY+G  G+ L   IF
Sbjct: 1008 VYATPFCSVV---------------VEDFGKALHQLKFQRYGNECLYNGHTGSPLDHLIF 1052

Query: 977  IGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYL 1036
             GP YYQRL+H+  DK   R  G +  + RQP +GR   GG+RFGEMERD +L++GA+  
Sbjct: 1053 FGPTYYQRLKHLSGDKIHARPRGPLQPLVRQPTEGRAHEGGLRFGEMERDCMLSYGASQW 1112

Query: 1037 LHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSK 1096
            L +RL   SDY+   VC++CG++  A                          C  C    
Sbjct: 1113 LRERLFRVSDYYSVHVCNICGTICAAD------------------TEQNVYKCQGCDNDT 1154

Query: 1097 GMETVAMPYVFRYLAAELAAMNIKITLQLGDG 1128
             +    MPY  + L  EL  M++ I  +LG G
Sbjct: 1155 RISQTLMPYACKLLFQEL--MSMAILPRLGTG 1184


>gi|300122083|emb|CBK22657.2| unnamed protein product [Blastocystis hominis]
          Length = 1194

 Score =  341 bits (874), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 311/1137 (27%), Positives = 487/1137 (42%), Gaps = 169/1137 (14%)

Query: 74   FPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVF---------RSVILPKQ 124
             PVML++  C+L G D ++  S+ E   + GGYFI+NG E+           +  +  K+
Sbjct: 110  IPVMLRSEACNLYGLDDERRASIGECIYDQGGYFIINGSEKAIIAQERQTTNKVYVFEKK 169

Query: 125  NYPMSMVRSSFRDRREGYTDKA-VVIRCVRKDQSSVTLKLYYLLNGSVRLGFW--LQGKE 181
                    +  R   EG +  A  ++ C+    S   +K  Y +        W  L    
Sbjct: 170  QPSKYSWTAEIRSVPEGSSVPAQTLMLCMYAHSSKSQIKNKYCI--------WAKLPTLS 221

Query: 182  YLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSL 241
              +PV I+ +AL   ND  I  H+   +D+             + ER +  L E  +   
Sbjct: 222  DEIPVCILFRALGCENDRSIIQHICYNFDDVE-----------MMERFRPSLVEASECR- 269

Query: 242  TTRLQCLQHIGEHFQPVID--GLQSES-YYAVAETVIRDYIFVHLN------DNNDKFNL 292
             TR   L  I      +ID  G +  S     A  +++  +  H+N       N  K   
Sbjct: 270  -TREVALNFIATRHPKMIDENGTRPRSERVKFASRLLQKIMLPHINVDFGPNSNCKKAFY 328

Query: 293  LIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIE 352
            L +M+ KL +   + +  ++ D + N+ + L G +I       L  + ++ +  ++ ++ 
Sbjct: 329  LGYMVHKLLNCSLNRNEQEDRDHISNKRMDLAGPMIGRLFHGLLYRFTKELRSHMK-KVV 387

Query: 353  NNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERL 412
            N+ K   F N      +M    S  I   ++    TG    ++   +    G +    RL
Sbjct: 388  NSRKGSSFIN------IMTNAKSSIISDGLKYSFATGNWGDRS-RGMPTTTGVSQSLNRL 440

Query: 413  NFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRV 472
             +   +S  R +         + T  R L    WG +CP  TP+G+ CG++ ++   C  
Sbjct: 441  TYASSLSSLRRLKSPIDTTS-KVTKPRLLHSTQWGMMCPAETPEGQSCGIVKNLALMC-- 497

Query: 473  ASYYDSRGN------IRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVV 526
               Y S GN       RD+   +  I R+L   G +  L  +  S  P    V ++G  V
Sbjct: 498  ---YISVGNPVGAAGARDWQVEK--IYRLLENNG-VEELETIASSLIPKTTKVFVNGVWV 551

Query: 527  GVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVR 586
            G+    ++  ++ H        + V         +    G     LY+     + V+ +R
Sbjct: 552  GIHRDPKV--ILDHREDFDTDVSMVYDIQERELRITADAGRCCRPLYVVDPITQRVK-IR 608

Query: 587  NISLPSEESQN----------IELIGPFEQVFMEIRCPDGGD-------GGRRNAFPATH 629
               L + + +           IE +   E+ +    C  G D          R+    TH
Sbjct: 609  KYHLRNLQPETMFSDLVLNRLIEYVSAEEEEY----CMIGMDLKTMRACVENRSCTTYTH 664

Query: 630  EEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQ 689
             EIHP+ +L V A++ P+ DHNQSPRN YQ  M KQ MG  V   + R D   + L  PQ
Sbjct: 665  CEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYVSNYRQRMDTTAHVLSYPQ 724

Query: 690  TPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-- 747
             P+V T   T     E P G N +VA+  Y+GY+ ED++ILN+S+++RG+     Y+T  
Sbjct: 725  QPLVTTKAMTYLRFKELPAGCNCVVAICCYSGYNQEDSLILNQSAIERGLFRSIFYRTYQ 784

Query: 748  ------ETIDLSDDGNKVDRGQKLFRR--------NKDAKSLHSVIDSDGLPYVGQ---- 789
                  +T   S   +    G + F R         KD + L+  +D DGL   G     
Sbjct: 785  DTEVRRDTTTSSLSLSNPSMGNERFCRPLSEQCSMTKD-EGLYRNLDEDGLVKPGSRVTG 843

Query: 790  ---MIHPGEPYCSIYDKTTNSWRTNSR--KGSESVFVDYVAVDMKNSKNLPQKANIRFRH 844
               +I    P   +     ++ + NS   + +ES  VD V +   N K   +   ++ R 
Sbjct: 844  DSILIGKATPTGELNVHGRSNLKDNSTGLRHAESGIVDEVML-TTNEKGF-RFVKVKVRS 901

Query: 845  TRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLES 904
             R P IGDK SSRHGQKG     +   DMPF+   G+ PD+I+NPHA PSRMTI  L+E 
Sbjct: 902  VRVPQIGDKLSSRHGQKGTIGMTYRQEDMPFTE-NGIVPDIIMNPHAIPSRMTIGQLIEC 960

Query: 905  VAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYS 964
            +  K  +L  +  D T F++                 V+++   L   G+   G EVLY+
Sbjct: 961  LLGKVAALQAREGDGTAFSDVT---------------VEDISNKLHNEGYQKRGYEVLYN 1005

Query: 965  GVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQ------ITRQPIKGRKRGGGI 1018
            G  G  +   +F+GP +YQRL+H+V DK   R+ G   +       TRQP++GR R GG+
Sbjct: 1006 GHTGRRMEARVFMGPTFYQRLKHLVDDKIHARARGMNTKPGRILHPTRQPLEGRSRDGGL 1065

Query: 1019 RFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTA---TFIHPQKRAIREI 1075
            R GEMERD L+A+GA+ L+ +R    SD +V  +C  CG + T    T+I          
Sbjct: 1066 RMGEMERDVLIAYGASQLVRERFFYSSDAYVVTICDDCGLICTMIDNTYI---------- 1115

Query: 1076 GGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQ----LGDG 1128
                         C  C        V +PY  + L  EL +MNI   +     +GDG
Sbjct: 1116 -------------CKNCDNKTRFSKVEIPYACKLLFQELMSMNIAPRIHTGGIMGDG 1159


>gi|242808107|ref|XP_002485094.1| DNA-directed RNA polymerase III, beta subunit, putative [Talaromyces
            stipitatus ATCC 10500]
 gi|218715719|gb|EED15141.1| DNA-directed RNA polymerase III, beta subunit, putative [Talaromyces
            stipitatus ATCC 10500]
          Length = 1212

 Score =  341 bits (874), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 201/519 (38%), Positives = 275/519 (52%), Gaps = 62/519 (11%)

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH EI P  +L  VA L PY  HNQSPRN YQC M KQ +G        R D  LY +  
Sbjct: 729  THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSLLYLMVY 788

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
            PQ P+V+T T      D  P G NA VAV++Y+GYD+EDA++LNK SVDRG    Q+++ 
Sbjct: 789  PQKPMVKTRTIELIKYDHLPAGQNATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRK 848

Query: 748  ETIDLSDDGNKVD---RGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCS--IYD 802
               +L    N  +   RG ++   N      H+++DSDGL  VG+++  G+ Y +  +  
Sbjct: 849  YVANLKSYPNGSEDRLRGPEIGENNVPIAK-HALLDSDGLAAVGEVVSQGQVYINKEVPA 907

Query: 803  KTTNSWRTNSRKGS--------------ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNP 848
               ++  T S  G               +  ++D V V +   ++   K  ++ R TR P
Sbjct: 908  AAFSAGITGSDAGRPTDYNPAPMTYKLPDPSYIDKVMVSVTEGESKIYK--VQTRQTRRP 965

Query: 849  IIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
             +GDKFSSRHGQKGV   +    DMPF+   G+ PD+I+NPH FPSRMT+  LLE VA K
Sbjct: 966  EVGDKFSSRHGQKGVVGIIAEQADMPFTD-QGIVPDIIMNPHGFPSRMTVGKLLELVAGK 1024

Query: 909  GGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYG 968
             G L G+    T F  S                V+E+  +L   GF+Y G + L SG+ G
Sbjct: 1025 AGVLSGQHGYGTAFGGSP---------------VEEMSAILVDKGFSYGGKDYLTSGITG 1069

Query: 969  TELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSL 1028
              L   +F GP+YYQ+L+HMV DK   RSTG    +TRQP +GR R GG+R GEMERD L
Sbjct: 1070 DPLPFYVFTGPIYYQKLKHMVQDKMHSRSTGPRATLTRQPTEGRSRDGGLRLGEMERDCL 1129

Query: 1029 LAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVT 1088
            +A+G + LL +RL   SD H  D+C  CG      F+  Q                    
Sbjct: 1130 IAYGTSQLLLERLMLSSDKHEVDICEKCG------FMGYQN------------------W 1165

Query: 1089 CHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
            C  C++S+G+  + +PY  + L  EL +MN+   L+L D
Sbjct: 1166 CQRCRSSRGVVKMTIPYAAKLLIQELLSMNVTARLKLED 1204



 Score = 81.3 bits (199), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 109/452 (24%), Positives = 180/452 (39%), Gaps = 69/452 (15%)

Query: 36  DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
           + CR   ++Y   +  D  F Y      V + R   G+ P+ML++ +C L      +L  
Sbjct: 169 NECRLRDMTYAAPIFVD--FTYKRGKDNVTQRRVPIGRMPIMLRSSKCVLSNKKPNELHL 226

Query: 96  LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
           L E   + GGYFI+NG E+    VIL ++    + +      ++E            RK 
Sbjct: 227 LNECPLDPGGYFIVNGTEK----VILVQEQLSKNRIIVETDPKKEIVQASVTSSSNERKS 282

Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
           +S + LK         RL          +P+ IVLKA+   +D E+   L    D+ Y+ 
Sbjct: 283 KSYIILK-------KDRLYLRHNVLSEDVPLVIVLKAMGVHSDKEMM-LLVAGIDDVYQ- 333

Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ---PVIDGLQ----SESYY 268
                      E   I   E    ++ T+ Q L  IG   +     + G +     E+  
Sbjct: 334 -----------EDFAINFEEAIKQNVFTQQQALDWIGSKIKINRGKVGGYKKTHIEEAIE 382

Query: 269 AVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
           A++  VI  ++ V   D   K   +  M +++       S+ D+ D + N+ + L G L+
Sbjct: 383 AISSVVI-SHVEVTNMDFRPKAIYVANMARRVLMAKHDPSMVDDRDYVGNKRLELAGQLL 441

Query: 329 TIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKT 388
            +      ED                 KKF F    NI KV+ K   ++I  ++  +   
Sbjct: 442 ALL----FEDLF---------------KKFCFDIKMNITKVLGKR-RREIFDAMSVVALH 481

Query: 389 G--------RLATQTGLDLQ----QRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
           G        R  +     L+    +RAG T    RL+++  +     +   + F   R  
Sbjct: 482 GNHITHGMNRAISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRI--SSQFEKTRKV 539

Query: 437 S-VRKLLPESWGFLCPVHTPDGEPCGLLNHMT 467
           S  R L P  +G LCP  TP+GE CGL+ ++ 
Sbjct: 540 SGPRALQPSQFGMLCPSDTPEGEACGLVKNLA 571


>gi|387592536|gb|EIJ87560.1| RNA polymerase [Nematocida parisii ERTm3]
 gi|387595162|gb|EIJ92787.1| RNA polymerase [Nematocida parisii ERTm1]
          Length = 1089

 Score =  341 bits (874), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 309/1138 (27%), Positives = 486/1138 (42%), Gaps = 203/1138 (17%)

Query: 36   DHCRQAKISYTGKLMADVEFQYLDAGSPVVRER-FNFGQFPVMLKTRRCHLQ-------- 86
            + CR   ++Y+G ++ DVE+     G  ++  R    G+ P+ML +R    Q        
Sbjct: 93   EECRIRNMTYSGDIVVDVEYTR---GKDIISSRNVVVGKMPIMLGSRLSLRQKEFMENQV 149

Query: 87   GADSQKLVSL---------KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRD 137
            G D+  +  +          E   ++GGYFI  G+ERV   ++  +      ++ + FR 
Sbjct: 150  GIDTSNMQRITNPMYTRPKNECPYDIGGYFICKGVERVL--LMQEQLAKNRILIETDFRG 207

Query: 138  RREGYTDKAVVIRCV---RKDQSSVTLK--LYYLLNGSVRLGFWLQGKEYLLPVGIVLKA 192
                  D   V+      RK ++ V +K  L YL + S+            +P+ IV+K 
Sbjct: 208  ------DLCAVVTSSSLERKSKTKVVMKKKLLYLSHNSLTED---------IPLNIVMKG 252

Query: 193  LVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIG 252
            +  T DLEI                  +G P+ S      +A ++     T L+ L  IG
Sbjct: 253  MGVTTDLEI---------------DILIGQPVQS------IAHIR-----TELEALAWIG 286

Query: 253  EHFQPVIDGLQSESYYAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQKLFSLVDHTS 308
               +    G+        A  ++ D I  H+     D   K   L  M + L    +  +
Sbjct: 287  SRIKTRSGGIDE------ARLLLCDIILAHIPGTGTDMRRKAEYLSVMARMLIDTANGNT 340

Query: 309  --VSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEI--ENNGKKFDFFNLA 364
              + ++ D + N+ I L G ++++  ++ L+    + KK +   +      ++ D  +  
Sbjct: 341  DTLQNDKDFVGNKRIELTGQMLSLLFEDLLKRLNTEIKKALDRVLCKRARAQELDALHFL 400

Query: 365  NIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAV 424
             + + M       I T +   + TG  + +      +RAG T    RL+ L  I     V
Sbjct: 401  VMNRGM-------ITTGLLRAISTGSWSLKRFR--MERAGITQVLTRLSRLSAIGMCSRV 451

Query: 425  HRGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIR 483
               + F   R  S  R L    WG  CP  TP+GE CGL+  +     +         I 
Sbjct: 452  S--SQFEKTRKVSGPRALHCSQWGVFCPADTPEGEACGLVKSLAMLTEITPAESEESVIS 509

Query: 484  DFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRR 543
              S +    + V+       S   + KS         ++G ++G+   S+  ++   LR+
Sbjct: 510  ALSFLGIEDISVI-------STGDMEKSK-----KCWVNGVIIGI--CSDPARMACELRK 555

Query: 544  LKVSAASVIPDDLEVGYVPLSLG-GAYPGLYLFTSPPKFVRPVRNIS--LPSEESQNIEL 600
            ++ +           G +P ++G      L++ T   +  RP+  +    P     +I L
Sbjct: 556  VRRN-----------GSIPSTVGIWVNNDLFISTETGRLTRPLIIVEDGEPKLTQTHIRL 604

Query: 601  IGPFEQVFME------IRCPDGGDGGRRNAFPA----------THEEIHPTGMLSVVANL 644
            +    +   +      I C D  +   +N+  A          TH EI P  +L  VA +
Sbjct: 605  LKEGYKTVNDLLREGLIECIDQNEA--KNSLIAVWRTEITQDTTHLEIDPAAILGYVAGV 662

Query: 645  TPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGID 704
             PY  HNQSPRN YQC M KQ +G +    + R D   + +  PQ P+  T        +
Sbjct: 663  IPYPHHNQSPRNTYQCAMGKQGVGVTGVDQRRRMDGANFFMVNPQRPLAATRGMEIIKYN 722

Query: 705  EYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD-DGNKVDRGQ 763
            E P G N  +AV++ +GYD+EDA+ILNK+S+DRG+    +++T  + L    G   D   
Sbjct: 723  ELPAGQNLTIAVMSMSGYDIEDALILNKASIDRGIGRALLFKTHALSLRTYPGGAAD--- 779

Query: 764  KLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTT--NSWRTNSRKGSESVFV 821
                           I  DG+P  G  +  G    +  D+ T   S      +G +S  +
Sbjct: 780  --------------TIVGDGIPSPGMKVQEG---ITFIDRRTPMGSKAGAVYRGLDSASI 822

Query: 822  DYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGM 881
            D  A+ M+   +L     +   H R P IGDKFSSRHGQKGV   + P  DMPF+ + G+
Sbjct: 823  DKTAI-MRTGDDLITIKAVVKEH-RIPRIGDKFSSRHGQKGVVGLILPQEDMPFNEM-GI 879

Query: 882  RPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSL 941
             PDL++NPH FPSRMT+  +LE V  K              AN  KK      T      
Sbjct: 880  SPDLVMNPHGFPSRMTVGKILELVTGKS------------IANGSKKLTQYAATAFGGVK 927

Query: 942  VDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTM 1001
              ++   L + G++  G E L  G  G ++   IF GPV+YQRL+HMV+DK   R+ G  
Sbjct: 928  AQDIANELISLGYSETGKETLICGTSGEQIPVRIFFGPVFYQRLKHMVTDKMHARARGPR 987

Query: 1002 DQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLT 1061
              +TRQP +GR R GG R GEMERD L+ +GA+ +L +RL   SD  +A VCS C  +++
Sbjct: 988  AVLTRQPTEGRCRDGGFRLGEMERDCLIGYGASEILIERLVISSDKFMAHVCSGCKLIIS 1047

Query: 1062 ATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
             +                         C  C     M+ + MPY  + L  EL AM I
Sbjct: 1048 PS------------------------GCPGCGKGTEMQKIQMPYACKLLFQELMAMKI 1081


>gi|212537851|ref|XP_002149081.1| DNA-directed RNA polymerase III, beta subunit, putative [Talaromyces
            marneffei ATCC 18224]
 gi|210068823|gb|EEA22914.1| DNA-directed RNA polymerase III, beta subunit, putative [Talaromyces
            marneffei ATCC 18224]
          Length = 1212

 Score =  341 bits (874), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 200/519 (38%), Positives = 277/519 (53%), Gaps = 62/519 (11%)

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH EI P  +L  VA L PY  HNQSPRN YQC M KQ +G        R D  LY +  
Sbjct: 729  THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSLLYLMVY 788

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
            PQ P+V+T T      D+ P G NA VAV++Y+GYD+EDA++LNK SVDRG    Q+++ 
Sbjct: 789  PQKPMVKTRTIELIKYDQLPAGQNATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRK 848

Query: 748  ETIDLSDDGNKVD---RGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCS--IYD 802
               +L    N  +   RG +L        + H+++D+DGL  VG ++  G+ Y +  +  
Sbjct: 849  YVANLKSYPNGSEDRLRGPELDEEGAPI-TKHALLDTDGLAAVGAVVSQGQVYINKEVPA 907

Query: 803  KTTNSWRTNSRKGS--------------ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNP 848
               ++  T S  G               +  ++D V V +   ++   K  ++ R TR P
Sbjct: 908  AAFSAGITGSDVGRPPDYNPAPMTYKLPDPSYIDKVMVSVTEGESKIYK--VQTRQTRRP 965

Query: 849  IIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
             +GDKFSSRHGQKGV   +    DMPF+   G+ PD+I+NPH FPSRMT+  LLE VA K
Sbjct: 966  EVGDKFSSRHGQKGVVGIIAEQADMPFND-QGIVPDIIMNPHGFPSRMTVGKLLELVAGK 1024

Query: 909  GGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYG 968
             G L G+    T F  S                V+++  +L   GF+Y G + L SG+ G
Sbjct: 1025 AGVLSGQHGYGTAFGGSP---------------VEQMSAILVDKGFSYGGKDYLTSGITG 1069

Query: 969  TELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSL 1028
              L   +F+GP+YYQ+L+HMV DK   RSTG    +TRQP +GR R GG+R GEMERD L
Sbjct: 1070 EPLPFYVFMGPIYYQKLKHMVQDKMHSRSTGPRATLTRQPTEGRSRDGGLRLGEMERDCL 1129

Query: 1029 LAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVT 1088
            +A+G + LL +RL   SD H  D+C  CG      F+  Q                    
Sbjct: 1130 IAYGTSQLLLERLMLSSDKHEVDICEKCG------FMGYQN------------------W 1165

Query: 1089 CHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
            C  C++S+G+  + +PY  + L  EL +MN+   L+LGD
Sbjct: 1166 CQRCRSSRGVVKMTIPYAAKLLIQELLSMNVTARLKLGD 1204



 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 103/451 (22%), Positives = 182/451 (40%), Gaps = 53/451 (11%)

Query: 36  DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
           + CR   ++Y   +  D  F Y      V + R   G+ P+ML++ +C L      ++  
Sbjct: 169 NECRLRDMTYAAPIFVD--FTYKRGKDKVTQRRVPIGRMPIMLRSSKCVLSNKKPNEMHL 226

Query: 96  LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
           L E   + GGYFI+NG E+    VIL ++    + +      ++E            RK 
Sbjct: 227 LNECPLDPGGYFIVNGTEK----VILVQEQLSKNRIIVETDPKKEIVQASVTSSSNERKS 282

Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
           +S + LK         RL          +P+ IVLKA+   +D E+   L    D+ Y+ 
Sbjct: 283 KSYIILK-------KDRLYLKHNVLSEDVPLVIVLKAMGVHSDKEMM-LLVAGVDDVYQ- 333

Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ---PVIDGLQS---ESYYA 269
                      E   I   E    ++ T+ Q L  IG   +     I G +    E    
Sbjct: 334 -----------EDFAINFEEAIKQNVFTQQQALDWIGSKIKINRGKIGGYKKTHIEEAIE 382

Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
              +VI  ++ V   D   K   +  M +++      + + D+ D + N+ + L G L+ 
Sbjct: 383 AISSVIISHVEVTDMDFRPKAIYVANMARRVLMAKHDSDMVDDRDYVGNKRLELAGQLLA 442

Query: 330 IYLKEKLEDWLRKGKKLIQDEIEN--NGKKFDFFNLANIKKVMEKNPSKQIGTSIET--- 384
           +      ED  +K +  I+  I      ++ + F+  ++  +   + +  +  +I T   
Sbjct: 443 LL----FEDLFKKFQFDIKMNITKVLGKRRREIFDAMSVVTLHGNHITHGMNRAISTGNW 498

Query: 385 MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLP 443
            LK  R+         +RAG T    RL+++  +     +   + F   R  S  R L P
Sbjct: 499 SLKRFRM---------ERAGVTHVLSRLSYIAALGMMTRI--SSQFEKTRKVSGPRALQP 547

Query: 444 ESWGFLCPVHTPDGEPCGLLNHMTSTCRVAS 474
             +G LCP  TP+GE CGL+ ++     + +
Sbjct: 548 SQFGMLCPSDTPEGEACGLVKNLALMTHITT 578


>gi|344303893|gb|EGW34142.1| DNA-directed RNA polymerase [Spathaspora passalidarum NRRL Y-27907]
          Length = 1155

 Score =  340 bits (873), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 203/524 (38%), Positives = 274/524 (52%), Gaps = 61/524 (11%)

Query: 623  NAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKL 682
            N+ P TH EI P  +L  VA L PY  HNQSPRN YQC M KQ +G        R D  L
Sbjct: 672  NSVPTTHLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFRRIDTLL 731

Query: 683  YHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG 742
            Y +  PQ P+V+T T      D+ P G NA VAV++Y+GYD+EDA++LNK+S+DRG    
Sbjct: 732  YFMVYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKASIDRGFGRC 791

Query: 743  QIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSL--HSVIDSDGLPYVGQMIHPGEPYCSI 800
            Q+ +  TI L    N         R ++    +  H  +  DGL  VG  I  G+ Y + 
Sbjct: 792  QVVRKNTIQLKRYPNHTKDILSGMRVDEHGNPIFPHQALGPDGLGEVGARIENGQIYANK 851

Query: 801  YDKTT--------NSWRTNSR---------KGSESVFVDYVAVDMKNSKNLPQKANIRFR 843
            +  T          S  TN           KG E  +VD V   M  S N      +  R
Sbjct: 852  FVPTNAGESALGGASEPTNVESHRETPAYYKGPEPSYVDQVM--MSVSDNDQALIKVLLR 909

Query: 844  HTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLE 903
             TR P +GDKFSSRHGQKGVC  +    D+PF+ + G+ PD+I+NPH FPSRMT+  ++E
Sbjct: 910  QTRRPELGDKFSSRHGQKGVCGIIVQQEDLPFNDM-GISPDIIMNPHGFPSRMTVGKMIE 968

Query: 904  SVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLY 963
             ++ K G L+G     T F        G    D SK LVD+        GF+Y G ++LY
Sbjct: 969  LISGKAGVLNGTLEYGTCFG-------GSKLEDMSKILVDK--------GFSYSGKDMLY 1013

Query: 964  SGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEM 1023
            SG+ G  L   IF GP+YYQ+L+HMV DK   R+ G    +TRQP +GR R GG+R GEM
Sbjct: 1014 SGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEM 1073

Query: 1024 ERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARA 1083
            ERD ++A+GA+ LL +RL   SD    D+C+ CG +   ++                   
Sbjct: 1074 ERDCVIAYGASQLLLERLMISSDAFEVDICNKCGLMGYNSW------------------- 1114

Query: 1084 PKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
                 C  C++S+ +  + +P   + L  EL +MNI   L+LGD
Sbjct: 1115 -----CTTCKSSENIIKMTIPCAAKLLFQELLSMNIAPRLRLGD 1153



 Score =  105 bits (263), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 116/520 (22%), Positives = 214/520 (41%), Gaps = 98/520 (18%)

Query: 9   FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
           F  ++ LV+ H++SF+Y +D  L ++                                  
Sbjct: 48  FLKVKGLVKQHLDSFNYFVDTDLKKIIKANELVLSDVDPEFYLKYLDIRVGHRSKTPNDK 107

Query: 37  -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
                   CR   ++Y+  +  DVE  Y      +V      G+ P+ML++ +C L GAD
Sbjct: 108 LVLMPPHQCRLRDLTYSAPIFVDVE--YTRGRKIIVHTDLEIGRMPIMLRSNKCILDGAD 165

Query: 90  SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
              +    E   + GGYFI+NG E+V   +++ +Q     ++  +  D ++G    +V  
Sbjct: 166 DNTMARYDECPLDPGGYFIVNGTEKV---ILVQEQLSKNRIIVEA--DEKKGIVQASVTS 220

Query: 150 RC-VRKDQSSVTLK--LYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLT 206
               RK ++ V  K    YL + S+            +P+ I+LKA   T+DLEI   L 
Sbjct: 221 STHERKSKTYVITKNDKIYLKHNSISED---------IPIVIILKAAGITSDLEIL-QLV 270

Query: 207 CCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ-------PVI 259
           C  D  Y+            +   +   E   L + T+ Q L ++G+  +       P +
Sbjct: 271 CGSDPNYQ------------DLFVVNFEEAARLEVFTQQQALNYVGKRVKTIRRAGAPKL 318

Query: 260 DGLQSESYYAVAETVIRDYIFVHLNDNNDKFN----LLIFMLQKLFSLVDHTSVSDNPDS 315
             LQ E   A+A T+I      HL  ++ +F      +  M +++   + + ++ D+ D 
Sbjct: 319 SQLQ-EGIEAIATTII-----AHLTVSDLQFKEKALYIATMARRVIMTMHNPTMVDDRDY 372

Query: 316 LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPS 375
           + N+ + L G L+++  ++  + +    K  I   ++   +  +F  L +I        S
Sbjct: 373 VGNKRLELAGQLMSLLFEDLFKKFNSDFKANIDKVLKKPSRTSEFDALLSINI-----HS 427

Query: 376 KQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
             I   +   + TG  + +      +RAG T    RL+++  +     +   + F   R 
Sbjct: 428 NNITMGLNRAISTGNWSLKRF--KMERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRK 483

Query: 436 TS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVAS 474
            S  R L P  +G LC   TP+GE CGL+ ++     + +
Sbjct: 484 VSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITT 523


>gi|378754668|gb|EHY64698.1| RNA polymerase [Nematocida sp. 1 ERTm2]
          Length = 1088

 Score =  340 bits (872), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 316/1138 (27%), Positives = 490/1138 (43%), Gaps = 204/1138 (17%)

Query: 36   DHCRQAKISYTGKLMADVEFQYLDAGSPVVRER-FNFGQFPVMLKTR------------- 81
            + CR   ++Y+G ++ DVE+     G  ++  R    G+ P+ML +R             
Sbjct: 93   EECRIRNMTYSGDIVVDVEYTR---GKDIISSRNVVVGKMPIMLGSRLSLQQKDFMESNI 149

Query: 82   ---RCHLQGADSQKLVSLKEEAA-EMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRD 137
                 +L+  ++ K    K E   ++GGYFI  G+ERV   ++  +      ++ + FR 
Sbjct: 150  GVISSNLRQINNPKYTRPKNECPYDIGGYFICKGVERVL--LMQEQLAKNRILIENDFRG 207

Query: 138  RREGYTDKAVVIRCV---RKDQSSVTLK--LYYLLNGSVRLGFWLQGKEYLLPVGIVLKA 192
                  D   V+      RK ++ V +K  L YL + S+            +P+ IV+K 
Sbjct: 208  ------DLCAVVTSSSLERKSKTKVVMKKKLLYLAHNSLTED---------VPLNIVMKG 252

Query: 193  LVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIG 252
            +  T DLEI                  +G P  S            + + T L+ L  IG
Sbjct: 253  MGITTDLEI---------------DILIGQPTPS-----------IVHIRTELEALAWIG 286

Query: 253  EHFQPVIDGLQSESYYAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQKLFSLVDHT- 307
               +    G++       A   + D I  H+     D   K   L  M + L    D   
Sbjct: 287  SRIKTRAGGIEE------ARLFLCDIILAHIPGIGTDMRRKAEYLSVMARMLIDTADGNV 340

Query: 308  -SVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANI 366
             S+ ++ D + N+ I L G ++++  ++ L+    + KK +   +    +  +   L  +
Sbjct: 341  DSLQNDKDFVGNKRIELTGQMLSLLFEDLLKRLNTEIKKALDRVLCKRARAQEMDALHFL 400

Query: 367  KKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHR 426
              VM +     I T +   + TG  + +      +RAG T    RL+ L  I     V  
Sbjct: 401  --VMNRG---LITTGLLRAISTGSWSLKRFR--MERAGITQVLTRLSRLSAIGMCSRVS- 452

Query: 427  GASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDF 485
             + F   R  S  R L    WG  CP  TP+GE CGL+  +     +    D  G I   
Sbjct: 453  -SQFEKTRKVSGPRALHCSQWGVFCPADTPEGEACGLVKSLAMLTEITPNEDESGVISAL 511

Query: 486  SKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK 545
            S          +GV  I ++      G        ++G ++G    S+ E++   LR ++
Sbjct: 512  S---------FLGVEDISAISPGDLEGAS---KCWVNGVIIGT--CSDPERMARELRNVR 557

Query: 546  VSAASVIPDDLEVGYVPLSLG-GAYPGLYLFTSPPKFVRPVRNIS--LPSEESQNIELIG 602
             S           G +P ++G      LY+ T   +  RP+  +   LP     +I L+ 
Sbjct: 558  RS-----------GRIPSTVGVWVNKDLYISTETGRLTRPLIIVENCLPRLTRNHIRLLR 606

Query: 603  PFEQVFME------IRCPDGGDGGRRNAFPA----------THEEIHPTGMLSVVANLTP 646
               +   +      I   D  +   +N+  A          TH EI P  +L  VA + P
Sbjct: 607  EGYKTVNDLLNEGLIEYIDQNEA--KNSLIAVWSTEITDKTTHLEIDPAAILGYVAGVIP 664

Query: 647  YSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEY 706
            Y  HNQSPRN YQC M KQ +G +    + R D   + +  PQ P+  T        ++ 
Sbjct: 665  YPHHNQSPRNTYQCAMGKQGVGVTGVDQRRRMDGANFFMVNPQRPLAATRGMEIIKYNDL 724

Query: 707  PTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLF 766
            P G N  +AV++ +GYD+EDA++LNK+S+DRG+    +++T  + L              
Sbjct: 725  PAGQNLTIAVMSMSGYDIEDALVLNKASIDRGIGRALLFKTHALSL-------------- 770

Query: 767  RRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTT--NSWRTNSRKGSESVFVDYV 824
             R     S  +++  +G+P  G  +  G  +    D+ T   S      +G +   VD  
Sbjct: 771  -RTYPGGSADTIV-GEGIPPPGMKVQEGTTF---IDRRTPMGSKAGAVYRGLDGASVDKT 825

Query: 825  AVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPD 884
            A+ M+   +L     +   H R P IGDKFSSRHGQKGV   + P  DMPF+ + GM PD
Sbjct: 826  AI-MRTGDDLITIKTVLKEH-RIPRIGDKFSSRHGQKGVVGLILPQEDMPFNEL-GMSPD 882

Query: 885  LIINPHAFPSRMTIAMLLESVAAK---GGSLHGKFMDATPFANSVKKTNGDTGTDESKSL 941
            L++NPH FPSRMT+  +LE V  K    GS       AT F           G   ++S+
Sbjct: 883  LVMNPHGFPSRMTVGKILELVTGKCISNGSKKLTQYAATAF-----------GGVTAQSI 931

Query: 942  VDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTM 1001
             DEL  +    G++  G E L  G  G ++   IF GPV+YQRL+HMV+DK   R+ G  
Sbjct: 932  ADELVSL----GYSETGKETLVCGTSGEQIPVRIFFGPVFYQRLKHMVTDKMHARARGPR 987

Query: 1002 DQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLT 1061
              +TRQP +GR R GG R GEMERD L+ +GA+ +L +RL   SD  +A VCS C  +++
Sbjct: 988  AVLTRQPTEGRCRDGGFRLGEMERDCLIGYGASEILIERLVISSDKFMAHVCSECKLIIS 1047

Query: 1062 ATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
                                       C  C  +  ++ + MPY  + L  EL AM I
Sbjct: 1048 PN------------------------GCPGCSAAV-VQKIQMPYACKLLFQELIAMKI 1080


>gi|121703239|ref|XP_001269884.1| DNA-directed rna polymerase III subunit [Aspergillus clavatus NRRL 1]
 gi|119398027|gb|EAW08458.1| DNA-directed rna polymerase III subunit [Aspergillus clavatus NRRL 1]
          Length = 1246

 Score =  340 bits (872), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 198/519 (38%), Positives = 270/519 (52%), Gaps = 64/519 (12%)

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH EI P  +L  VA L PY  HNQSPRN YQC M KQ +G        R D  LY +  
Sbjct: 765  THLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVY 824

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
            PQ P+V++ T      D+ P G NA+VAV++Y+GYD+EDA++LNK SVDRG    Q+++ 
Sbjct: 825  PQKPMVKSRTIELTKYDQLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRK 884

Query: 748  ETIDLSDDGNKV-DRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN 806
               +L    N   DR       N      H++++SDGL  VG+ ++ GE Y    +K+T 
Sbjct: 885  YVTNLKSYSNGTKDRLNPPTYENGAPIRKHALLESDGLAAVGEQVNAGEVYI---NKSTP 941

Query: 807  SWRTNSRKGSES------------------VFVDYVAVDMKNSKNLPQKANIRFRHTRNP 848
                 S  GS++                   ++D V   ++ ++N  Q   +  R TR P
Sbjct: 942  DQSHMSGIGSDAGRPIQYTPTPMTYKLHDPAYIDKVMYSVQENEN--QLVKVLVRQTRRP 999

Query: 849  IIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
             +GDKFSSRHGQKGV   +    DMPF+ + G+ PD+I+NPH FPSRMT+  +LE VA K
Sbjct: 1000 EVGDKFSSRHGQKGVVGIIADQADMPFTDL-GINPDIIMNPHGFPSRMTVGKMLELVAGK 1058

Query: 909  GGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYG 968
             G L G     T F  +                V+E    L   GFNY G E L SG+ G
Sbjct: 1059 AGVLAGHHGYGTCFGGTP---------------VEETSRTLIAHGFNYGGKEYLTSGITG 1103

Query: 969  TELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSL 1028
              L   +F GP+YYQ+L+HMV DK   R+ G    +TRQP +GR R GG+R GEMERD L
Sbjct: 1104 EALPFYVFTGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCL 1163

Query: 1029 LAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVT 1088
            +A+G + LL +RL   SD H  DVC  CG +    +                        
Sbjct: 1164 IAYGTSQLLLERLMISSDRHEIDVCEQCGFMGYLNW------------------------ 1199

Query: 1089 CHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
            C  C++S+ +  + +PY  + L  EL +MN+   L+L D
Sbjct: 1200 CQRCKSSRSVVKMTIPYAAKLLIQELMSMNVTARLKLDD 1238



 Score = 94.0 bits (232), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 114/491 (23%), Positives = 207/491 (42%), Gaps = 75/491 (15%)

Query: 21  ESFDYMLDEGLSEMFDH-CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLK 79
           E  D  LD   S +  H CR    +Y   ++ D  F+Y+     V+R   + G+ P+ML+
Sbjct: 189 EPQDASLDAFPSSVSPHECRLRDTTYAAPILVD--FEYIRGRQRVIRRGVSIGRMPIMLR 246

Query: 80  TRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVF--------RSVIL---PKQNYPM 128
           + +C L      ++  L E   + GGYFI+NG E+V           +I+   PK+    
Sbjct: 247 SSKCVLANKTPSEMTVLNECPLDPGGYFIVNGTEKVILVQEQLSKNRIIVETDPKKEIVQ 306

Query: 129 SMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGI 188
           + V SS  +R+     K+ +I  ++KD+  V    + +LN  +             P+ I
Sbjct: 307 ASVTSSSNERKS----KSYII--LKKDKLYVK---HNVLNEDI-------------PIVI 344

Query: 189 VLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCL 248
           +L+A+    + E+   L    D  Y+ +              I   +   L + T+ Q L
Sbjct: 345 LLRAMGIHTEQEML-LLVAGVDSLYQDD------------FAINFEDSIKLGIYTQQQAL 391

Query: 249 QHIGEHFQPVIDGLQ---SESYYAVAETVIRDYIFVHLNDNNDKFN----LLIFMLQKLF 301
             IG   +  I+  Q     ++   A   I   I  H+   N  F      +  M +++ 
Sbjct: 392 DWIGARIK--INRKQMSYRRTHIQEAVEAIASVIISHIEVKNMNFRPKAVYVAHMARRVL 449

Query: 302 SLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFF 361
              +  S+ D+ D L N+ + L G L+ +  ++  + +    K  I D++ N   + + F
Sbjct: 450 MAKNDPSLVDDRDYLGNKRLELAGQLLALLFEDLFKKFCFDIKMNI-DKVLNKRNRAEAF 508

Query: 362 NLANIKKVMEKNPSKQIGTSIET---MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFI 418
           +  ++  +   + ++ +  +I T    LK  R+         +RAG T    RL+++  +
Sbjct: 509 DAWSVMSMHGNHITQGMNRAISTGNWSLKRFRM---------ERAGVTHVLSRLSYIAAL 559

Query: 419 SFFRAVHRGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYD 477
                +   + F   R  S  R L P  +G LCP  TP+GE CGL+ ++     + +  D
Sbjct: 560 GMMTRI--SSQFEKTRKVSGPRALQPSQFGMLCPADTPEGEACGLVKNLALMTHITT-ND 616

Query: 478 SRGNIRDFSKM 488
             G I++   M
Sbjct: 617 EEGPIKNLVFM 627


>gi|169844839|ref|XP_001829140.1| DNA-dependent RNA polymerase II second largest subunit [Coprinopsis
            cinerea okayama7#130]
 gi|116509880|gb|EAU92775.1| DNA-dependent RNA polymerase II second largest subunit [Coprinopsis
            cinerea okayama7#130]
          Length = 1222

 Score =  340 bits (872), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 305/1133 (26%), Positives = 481/1133 (42%), Gaps = 171/1133 (15%)

Query: 71   FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRS----------VI 120
             G+ P+ML++  C L     Q L  L E   + GGYFI+NG E+V  +          V 
Sbjct: 171  IGKVPIMLRSSFCILHELRDQDLYDLNECPYDSGGYFIINGSEKVLIAQERMATNHVYVF 230

Query: 121  LPKQNYPMSM---VRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWL 177
               Q  P++    +RS+    R G T     ++   ++Q      +       +++    
Sbjct: 231  AKAQPSPINFLAEIRSAVE--RGGKTISQFQVKMFHRNQERSLGNVMKATIPYIKVD--- 285

Query: 178  QGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQ 237
                  +P+ +V +AL   +D +I  H+  CYD +   +   +  P + +   I   EV 
Sbjct: 286  ------IPIWVVFRALGVISDRDILEHI--CYDMQ-DAQMLEMLKPCIDDGFVIQDREV- 335

Query: 238  DLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLN----DNNDKFNLL 293
                      L  IG   +    GL  +     A+ +++  +  H++      + K    
Sbjct: 336  ---------ALDFIGN--RGTTTGLPRDRRIRYAQEILQKEMLPHISMAEGSESKKAYFF 384

Query: 294  IFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIEN 353
             +M+ +L          D+ D    + + L G L+    +       +   + +Q  +E 
Sbjct: 385  GYMIHRLLLAALERRELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVET 444

Query: 354  NGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLN 413
            + +    FNL+   K       + I   ++  L TG    Q    +  +AG +    R  
Sbjct: 445  HKE----FNLSLAVK------HQTITNGLKYSLATGNWGDQKK-SMSSKAGVSQVLNRYT 493

Query: 414  FLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMT--STCR 471
            +   +S  R  +      G +    R+L    WG +CP  TP+G+ CGL+ ++   +   
Sbjct: 494  YASTLSHLRRCNTPLGREG-KIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACIS 552

Query: 472  VASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV--I 529
            V SY                ++  L   G+  SL +   S  P    V ++G  +GV   
Sbjct: 553  VGSY-------------SAPVIEFLEEWGL-ESLEENAHSTTPCT-KVFVNGVWMGVHRD 597

Query: 530  PSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSP-------PKFV 582
            P++ ++ +    R+  +S    +  D+    + L          LF           K V
Sbjct: 598  PANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLVLQKKHV 657

Query: 583  RPVRNIS--------------------LPSEESQNIELIGPFEQVFMEIRCPDGGD---- 618
            R + N                      L +EE + + +    E + +  R  +G +    
Sbjct: 658  RWLANSENDDGEEWKWENLIKSGIVELLDAEEEETVMICMTPEDLEVSRRQSEGMEIQDH 717

Query: 619  -----GGRRNAFPATHEEIH----PTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGF 669
                   R  A    H   H    P+ +L + A++ P+ DHNQSPRN YQ  M KQ MG 
Sbjct: 718  EDYDPAARLKAGTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGI 777

Query: 670  SVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMI 729
             +     R D     L  PQ P+  T +       E P G N+IVA+L Y+GY+ ED++I
Sbjct: 778  FLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNSIVAILCYSGYNQEDSVI 837

Query: 730  LNKSSVDRGMCHGQIYQTETIDLSDDG--NKVDRGQKLFRRN--KDAKSLHSVIDSDGLP 785
            +N+SS+DRG+    IY    +DL       +++  +K  R    +     +  I+ DGL 
Sbjct: 838  VNQSSIDRGLFRS-IYYRSYMDLEKKSGIQQLEEFEKPTRETTLRMKHGTYDKIEDDGLI 896

Query: 786  YVGQ-------MIHPGEPYCSIYDKTTNSWRTNSR-------KGSESVFVDYVAVDMKNS 831
              G        +I    P     ++     RT++R       K +E+  VD V +   NS
Sbjct: 897  APGTNVTGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLI-TTNS 955

Query: 832  KNLPQK-ANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPH 890
            +   QK   +R R TR P IGDKF+SRHGQKG     +   DMPF+   G+ PDLIINPH
Sbjct: 956  EG--QKFVKVRVRSTRIPQIGDKFASRHGQKGTIGIAYRQEDMPFTA-EGIVPDLIINPH 1012

Query: 891  AFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLR 950
            A PSRMTI  L+E + +K  +L G   DATPF +                 V+ +   LR
Sbjct: 1013 AIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLT---------------VEGVSTFLR 1057

Query: 951  TCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIK 1010
              G+   G+EV+Y G  G +L  ++++GP YYQRL+HMV DK   R+ G +  +TRQP++
Sbjct: 1058 QRGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVE 1117

Query: 1011 GRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKR 1070
            GR R GG+RFGEMERD +++HG A  L +RL   SD +   VC +CG    A        
Sbjct: 1118 GRSRDGGLRFGEMERDCMISHGIAGFLKERLFDASDAYRLHVCDICGLTAIANL------ 1171

Query: 1071 AIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITL 1123
                          +   C AC+       + +PY  + L  EL +MNI   L
Sbjct: 1172 ------------KKQSFECRACKNKTACSQLYIPYAAKLLFQELQSMNIAARL 1212


>gi|340053396|emb|CCC47686.1| putative DNA-directed RNA polymerase II subunit 2 [Trypanosoma vivax
            Y486]
          Length = 1186

 Score =  340 bits (872), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 313/1111 (28%), Positives = 490/1111 (44%), Gaps = 138/1111 (12%)

Query: 67   ERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNY 126
            +    G+ P+MLK+ RC+L   D  +L  L E   + GGYFI+NG E+V  +      N+
Sbjct: 163  QNMELGRIPIMLKSIRCNLLYKDEDELPRLNECPHDQGGYFIINGTEKVLVAQERQAANH 222

Query: 127  PMSMVR-----SSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKE 181
              +  R        +   EG  +K       R  Q  +  K     +G   L   +   +
Sbjct: 223  VYAFTRPKGLLCEIKSIVEGSLNKP------RTFQIIMPYKKTGPGHGYENLLCRVAQMD 276

Query: 182  YLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSL 241
             L+P+ ++ +AL   +D EI    T   D K            + E ++  + +   L +
Sbjct: 277  ELIPLFVLFRALDMGSDREILQ--TVVPDLK---------DAAMLEMLRGSMEDASTLQI 325

Query: 242  TTRLQCLQHIGEHF--QPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQK 299
             TR + L  IG+    Q   + LQ E+   +   ++  ++ V    +  K   + +M+ +
Sbjct: 326  FTRDEALWFIGKRLGRQDSRENLQREAQGLLMRDLL-PHMGVDCTADRGKCLFIGYMVHR 384

Query: 300  LFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFD 359
            L  L        + D L ++ I + G L+T  L   L    ++  K + D   + G    
Sbjct: 385  LLLLALGRREDTDRDFLGHKRIDVAGALLTFQLNHFLVQVRKEMSKTVHDYSTSRGGVVS 444

Query: 360  FFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFIS 419
            F  + +         S+ I   +   L TG        ++  + G +    RL +   +S
Sbjct: 445  FAKILH---------SRLITDGMRRCLATGNFGDLKSGNI--KTGVSQTLNRLTYSSSLS 493

Query: 420  FFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSR 479
              R +    S A  + T  R L    WG++CPV TP+G   GLL ++   C +     SR
Sbjct: 494  NLRRIQNPIS-ASSKATRPRNLHCTQWGYICPVETPEGGSIGLLKNLALMCLI-----SR 547

Query: 480  GNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV----------- 528
            G+  D + +  ++   + G   +     L       +  V ++G ++GV           
Sbjct: 548  GS--DHTSVAQTVQARITGFHSV----GLSDLADVRLARVFVNGTLIGVHRDPERLLREL 601

Query: 529  ---IPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL------SLGGAYPGLYLFTSPP 579
                   E+   V+ +R ++     V  D       PL      SL     G+     P 
Sbjct: 602  RARRRGGELSNEVSIVRDIRDREIRVFSDAGRC-IRPLFVVEKSSLKLRKAGMGELLEPS 660

Query: 580  KFVRPVRNISLPSEESQN-IELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGML 638
            +     R IS      +  +ELI   E+  + I       G  +N F  +H E+ P+ +L
Sbjct: 661  RAPGGQRQISWNRVMKRGYVELIDCEEEDSLLIAMAPSEVG--KNYF-YSHCEMDPSMIL 717

Query: 639  SVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTY 698
             + A++ PY +HNQSPRN YQ  M KQ MG        R D   + L  PQ P+VRT   
Sbjct: 718  GICASIIPYPNHNQSPRNTYQSAMGKQAMGIYASNFNMRMDTTAHILFYPQKPLVRTKAM 777

Query: 699  TKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNK 758
            +    ++ P G NA+VA+  Y+GY+ ED++I+++S+V+RG      +++     S++  K
Sbjct: 778  SYMRSNDLPAGHNAVVAIACYSGYNQEDSIIMSRSAVERGFFRSVFWRS--YKASEENKK 835

Query: 759  VDRGQKLFRRNKDAKSLH------SVIDSDGL-----PYVGQMIHPGE----PYCSIYDK 803
               G+++F    D K  H      S +D+DGL     P +G  I  G+    P     + 
Sbjct: 836  --EGKEVFEV-PDRKICHVKRADYSKLDTDGLIKPGMPVMGGDILVGKTVPIPESMRENA 892

Query: 804  TTNSWRTNSR------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSR 857
            TT + R   R      + +E   VD V +  +N  N   K  ++ R  + P IGDKF SR
Sbjct: 893  TTANTRIMKRDCSISSRTAEKGVVDKVML-TENKGNRFTK--VKVRTIKIPNIGDKFCSR 949

Query: 858  HGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFM 917
            HGQKG     +   DMPF+   G+ PDLIINPHA PSRMT+A L+E++A K     G  +
Sbjct: 950  HGQKGTNGIQFRQEDMPFNS-DGISPDLIINPHAIPSRMTVAHLIETLAGKVACYKGGEV 1008

Query: 918  DATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFI 977
             ATPF + V               V++ G+ L+    + +G E LY+G  G  L   IF 
Sbjct: 1009 YATPFCSVV---------------VEDFGKALQQLKCHRYGNECLYNGHTGLPLEHLIFF 1053

Query: 978  GPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLL 1037
            GP YYQRL+H+  DK   R  G +  + RQP +GR   GG+RFGEMERD +L++GA+  L
Sbjct: 1054 GPTYYQRLKHLSGDKIHARPRGPLQPLVRQPTEGRAHEGGLRFGEMERDCMLSYGASQWL 1113

Query: 1038 HDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKG 1097
             +RL   SDY+   VC++CG++  A                          C  C     
Sbjct: 1114 RERLFRVSDYYAVHVCNMCGTICAAD------------------TEQNVYNCQGCDNDAR 1155

Query: 1098 METVAMPYVFRYLAAELAAMNIKITLQLGDG 1128
            +  V MPY  + L  EL  M++ I  +LG G
Sbjct: 1156 ISHVLMPYACKLLFQEL--MSMAILPRLGTG 1184


>gi|227830880|ref|YP_002832660.1| DNA-directed RNA polymerase subunit B [Sulfolobus islandicus
            L.S.2.15]
 gi|227457328|gb|ACP36015.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus L.S.2.15]
          Length = 1131

 Score =  340 bits (871), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 304/1108 (27%), Positives = 483/1108 (43%), Gaps = 149/1108 (13%)

Query: 67   ERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNY 126
            E    G  P+MLK+    +      KL+ + E+  + GGYFI+NG ERV    I+ +++ 
Sbjct: 115  EEVYIGDLPIMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVNGSERV----IVTQEDL 170

Query: 127  PMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGF-WLQGKEYLLP 185
              + V           T  A +I      +  VT++   L +G+  + F  + GK   +P
Sbjct: 171  APNRVLVDTGKTGSNITHTAKIISSTAGYRVPVTIE--RLKDGTFHVSFPAVPGK---IP 225

Query: 186  VGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRL 245
              I+++AL    D +I        D + + E      P + +   I  A V D       
Sbjct: 226  FVILMRALGILTDRDIV--YAVSLDPEIQNEL----FPSLEQASSI--ANVDD------- 270

Query: 246  QCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQKLF 301
              L  IG     V  G + E+    A+ +I  Y   HL    +D   K   L + + K+ 
Sbjct: 271  -ALDFIGSR---VAIGQKRENRIEKAQQIIDKYFLPHLGTSADDRRKKAYYLAYAISKVI 326

Query: 302  SLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFF 361
             L       D+ D   N+ + L G L     +   + +++     ++   +  G+K    
Sbjct: 327  ELYLGRREPDDKDHYANKRLRLAGDLFASLFRVAFKAFVKDLTYQLEKS-KVRGRKLALK 385

Query: 362  NLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFF 421
             L     V E+                 R A  TG  +  R G +   +R N+L  +S  
Sbjct: 386  ALVRPDIVTERI----------------RHALATGNWVGGRTGVSQLLDRTNWLSMLSHL 429

Query: 422  RAVHRGASFA-GLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRG 480
            R V   +S A G      R L    WG +CP  TP+G   GL+ ++    ++A   + R 
Sbjct: 430  RRVI--SSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNLALMAQIAVGINER- 486

Query: 481  NIRDFSKMRTSILRVLIGVGMIPS---LPKLVKSGPP-----AVLSVLLDGRVVGVI-PS 531
                       + + L  +G++P    + ++ + G           V+L+GR+VG     
Sbjct: 487  ----------IVEKTLYEMGVVPVEEVIRRVTEGGEDQNEYLKWSKVILNGRLVGYYRDG 536

Query: 532  SEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISL- 590
             E+ K +   RR        I D++ VG++          +++     +  RP+  +S  
Sbjct: 537  EELAKKIRERRR-----NGEISDEVNVGHIVTDFINE---VHVNCDSGRVRRPLIIVSNG 588

Query: 591  -PSEESQNIELIGP----FEQVFMEIRCPDGGDGGRRNAFPA----------THEEIHPT 635
             P    ++IE +      F+ +  + +          NA+ A          TH EI   
Sbjct: 589  NPLVTREDIEKLDSGSITFDDLVRQGKIEYLDAEEEENAYVALEPSDLTPEHTHLEIWSP 648

Query: 636  GMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRT 695
             +L + A++ PY +HNQSPRN YQ  MAKQ +G      + R D + + L  PQ P+V+T
Sbjct: 649  AILGITASIIPYPEHNQSPRNTYQSAMAKQALGLYAANYQLRTDTRAHLLHYPQRPLVQT 708

Query: 696  NTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG---QIYQTETID- 751
                  G    P G NAI+AV+++TGY+MED++I+N+SSV+RGM      ++Y TE +  
Sbjct: 709  RALDIIGYTNRPAGNNAILAVISFTGYNMEDSIIMNRSSVERGMYRSTFFRLYSTEEVKY 768

Query: 752  ---------LSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYD 802
                     + + G +  +G++ +R  +D   +   ++  G   +   + P        +
Sbjct: 769  PGGQEDKIVMPEPGVRGYKGKEYYRLLEDNGVVSPEVEVKGGDVLIGKVSPPRFLQEFKE 828

Query: 803  KTTNSWRTNSR---KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHG 859
             +    + ++    +  E   VD V +      N  +   +R R  R P IGDKF+SRHG
Sbjct: 829  LSPEQAKRDTSIVTRHGEMGIVDLVLITETAEGN--KLVKVRVRDLRVPSIGDKFASRHG 886

Query: 860  QKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDA 919
            QKGV   L P +DMP++ V G+ PD+I+NPHA PSRMT+  ++E +A K  +L G  +DA
Sbjct: 887  QKGVIGMLIPQVDMPYT-VKGVVPDIILNPHALPSRMTLGQIMEGIAGKYAALSGNIVDA 945

Query: 920  TPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGP 979
            TP                 K+ +++L   +   G+     EV Y G  G ++   I+ G 
Sbjct: 946  TPI---------------YKTPIEQLQNEILKYGYLPDATEVTYDGRSGQKIKSRIYFGV 990

Query: 980  VYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHD 1039
            VYYQ+L HMV+DK   R+ G +  +TRQP +GR R GG+RFGEMERD L+  G A LL D
Sbjct: 991  VYYQKLHHMVADKIHARARGPVQILTRQPTEGRAREGGLRFGEMERDCLIGFGTAMLLKD 1050

Query: 1040 RLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGME 1099
            RL   SD     VC  CG +                      +   K  C        + 
Sbjct: 1051 RLLDNSDRTTIYVCDQCGYIGWYD------------------KNKNKYICPIHGDKSNLF 1092

Query: 1100 TVAMPYVFRYLAAELAAMNIKITLQLGD 1127
             V + Y F+ L  EL +M I   L L D
Sbjct: 1093 PVTVSYAFKLLIQELMSMIISPRLILED 1120


>gi|260945433|ref|XP_002617014.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Clavispora
            lusitaniae ATCC 42720]
 gi|238848868|gb|EEQ38332.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Clavispora
            lusitaniae ATCC 42720]
          Length = 1159

 Score =  340 bits (871), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 205/519 (39%), Positives = 272/519 (52%), Gaps = 61/519 (11%)

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH EI P  +L  VA L PY  HNQSPRN YQC M KQ +G        R D  LY +  
Sbjct: 681  THLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFRRIDTLLYFMVY 740

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
            PQ P+V++ T      D+ P G NA VAV++Y+GYD+EDA++LNKSS+DRG    Q+ + 
Sbjct: 741  PQQPMVKSKTIELIEYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCQVVRK 800

Query: 748  ETIDLSDDGNKVDRGQKLFR--RNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCS------ 799
             TI L    N         R   N D    H+ +  DGL  VG  I  G+ Y +      
Sbjct: 801  NTIVLKRYPNHTKDIVAGMRVDENGDPIFAHNALGPDGLGEVGMRIENGQVYANKQVPTN 860

Query: 800  -----IYDKTTNSWRTNSR------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNP 848
                 + D        + R      +G E  +VD V   M  S N      +  R TR P
Sbjct: 861  AGESVLGDHNQPQSAESHRETPAYYRGPEPSYVDQVM--MSVSDNDQALIKVLLRQTRRP 918

Query: 849  IIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
             +GDKFSSRHGQKGVC  +    DMPF+ + G+ PD+I+NPH FPSRMT+  ++E ++ K
Sbjct: 919  ELGDKFSSRHGQKGVCGIIVQHEDMPFNDM-GISPDIIMNPHGFPSRMTVGKMIELISGK 977

Query: 909  GGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYG 968
             G L+G     T F        G    D SK LVD+        GFNY G ++LYSG+ G
Sbjct: 978  AGVLNGTLEYGTCFG-------GSKLEDMSKILVDK--------GFNYSGKDMLYSGITG 1022

Query: 969  TELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSL 1028
              L   IF GP+YYQ+L+HMV DK   RS G    +TRQP +GR R GG+R GEMERD +
Sbjct: 1023 ECLQAYIFFGPIYYQKLKHMVLDKMHARSRGPRAVLTRQPTEGRSRDGGLRLGEMERDCV 1082

Query: 1029 LAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVT 1088
            +A+GA+ LL +RL   SD    DVC+ CG +  +++                        
Sbjct: 1083 IAYGASQLLLERLMISSDAFEVDVCNNCGLMGYSSW------------------------ 1118

Query: 1089 CHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
            C  C++S+ +  + +PY  + L  EL +MNI   L+LGD
Sbjct: 1119 CSTCKSSEHVIKMTIPYAAKLLFQELLSMNIAPRLKLGD 1157



 Score =  105 bits (263), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 117/520 (22%), Positives = 213/520 (40%), Gaps = 97/520 (18%)

Query: 9   FEPLRELVRHHIESFDYMLDEGLSEMF--------------------------------- 35
           F  ++ LV+ H++SF+Y +D  L ++                                  
Sbjct: 48  FLKVKGLVKQHLDSFNYFVDVDLKKIIRANELVLSDVDPQFYLKYLDIRVGHKSSSAPGT 107

Query: 36  -------DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGA 88
                    CR   ++Y+  +  DVE  Y      ++ +    G+ P+ML++ +C L G 
Sbjct: 108 KEVIMAPHECRLRDLTYSAPIYVDVE--YTRGRKIIMHKDLEIGRMPIMLRSNKCVLDGI 165

Query: 89  DSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVV 148
           D  ++   +E   + GGYFI+NG E+V   +++ +Q        S  R   E    KA+V
Sbjct: 166 DEHQMAVFEECPIDPGGYFIVNGTEKV---ILIQEQ-------LSKNRIIVEADEKKAIV 215

Query: 149 IRCVRKDQSSVTLKLY------YLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIF 202
                  Q+SVT   +      Y+++ + ++          +P+ +VLKA    +D+EI 
Sbjct: 216 -------QASVTSSTHERKSKTYVISKNEKIYLKHNSIAEDVPIVVVLKAAGIVSDMEIL 268

Query: 203 NHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ------ 256
             L C  + +Y+            +   I   E   L + T+ Q L +IG+  +      
Sbjct: 269 -QLVCGANSQYQ------------DLFAINFEEAAKLEIFTQQQALLYIGKRVKTVRRAG 315

Query: 257 -PVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
            P +  LQ E   A+A TVI       LN       + I M +K+   + + S+ D+ D 
Sbjct: 316 APKLSQLQ-EGIEAIATTVIAHLTVSDLNFREKALYIAI-MARKVLMTMHNPSMVDDRDY 373

Query: 316 LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPS 375
           + N+ + L G L+++  ++  + +    K  I   ++   +  +F  L +I        S
Sbjct: 374 VGNKRLELAGQLMSLLFEDLFKKFNTDFKANIDKILKKPSRTSEFDALLSINI-----HS 428

Query: 376 KQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
             I   +   + TG  + +      +RAG T    RL+++  +     +   + F   R 
Sbjct: 429 NNITMGMNRAISTGNWSLKRF--KMERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRK 484

Query: 436 TS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVAS 474
            S  R L P  +G LC   TP+GE CGL+ ++     + +
Sbjct: 485 VSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITT 524


>gi|391870940|gb|EIT80109.1| RNA polymerase III, second largest subunit [Aspergillus oryzae 3.042]
          Length = 1008

 Score =  340 bits (871), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 198/517 (38%), Positives = 272/517 (52%), Gaps = 59/517 (11%)

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH EI P  +L  VA L PY  HNQSPRN YQC M KQ +G        R D  LY +  
Sbjct: 526  THLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVY 585

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
            PQ P+V++ T      D+ P G NA+VAV++Y+GYD+EDA++LNK SVDRG    Q+++ 
Sbjct: 586  PQKPMVKSRTIELTKYDQLPAGHNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFKK 645

Query: 748  ETIDLSDDGNKVDRGQKLFRRNKDAK-SLHSVIDSDGLPYVGQMIHPGEPYC--SIYDKT 804
               +L    N           + DA    H++++SDGL  VG+ ++ GE Y   S  D++
Sbjct: 646  SVANLKSYSNGTKDILMPPEYDNDAPIRKHALLESDGLAAVGEQVNAGEVYINKSTPDQS 705

Query: 805  TNSWRTNSRKGS--------------ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPII 850
              S    S  G               +  ++D V V    ++N  Q   +  R TR P +
Sbjct: 706  LASGFPGSDMGRPVKYTPTPMTYKLHDPAYIDQVLVSTTENEN--QLIKVLTRQTRRPEV 763

Query: 851  GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGG 910
            GDKFSSRHGQKGV   +    DMPF+   G+ PD+I+NPH FPSRMT+  +LE VA K G
Sbjct: 764  GDKFSSRHGQKGVVGIIADQADMPFTD-QGINPDIIMNPHGFPSRMTVGKMLELVAGKAG 822

Query: 911  SLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTE 970
             L G+    T F  S                V+E+ ++L   GF+Y G + L SG+ G  
Sbjct: 823  VLAGQHGYGTCFGGSP---------------VEEMSQILIDKGFSYGGKDYLTSGITGEA 867

Query: 971  LTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLA 1030
            L   +F GP+YYQ+L+HMV DK   R+ G    +TRQP +GR R GG+R GEMERD L+A
Sbjct: 868  LPFYVFTGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIA 927

Query: 1031 HGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCH 1090
            +G + LL +RL   SD H  DVC  CG +    +                        C 
Sbjct: 928  YGTSQLLLERLMISSDRHEIDVCEQCGFMGYLNW------------------------CQ 963

Query: 1091 ACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
             C++S+ +  +A+PY  + L  EL +MN+   L+L D
Sbjct: 964  RCKSSRSVVKMAIPYAAKLLIQELMSMNVTARLKLED 1000



 Score = 79.0 bits (193), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 102/427 (23%), Positives = 178/427 (41%), Gaps = 57/427 (13%)

Query: 74  FPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRS 133
            PVML++ +C L      ++  L E   + GGYFI+NG E+    VIL ++    + +  
Sbjct: 1   MPVMLRSSKCVLSDKTPAEMTVLDECPLDPGGYFIVNGTEK----VILVQEQLSKNRIIV 56

Query: 134 SFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKAL 193
               ++E            RK +S + LK   L    V+     +     +P+ I+LKA+
Sbjct: 57  ETDPKKEIVQASVTSSSNERKSKSYIVLKKDKLY---VKHNVLSED----IPIVILLKAM 109

Query: 194 VDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGE 253
               D E+   L    D+ Y+            E   I   E   L + T+ Q L  IG 
Sbjct: 110 GIHTDKEML-LLVAGIDKVYQ------------EDFAINFEEAIKLGIYTQQQALDWIGS 156

Query: 254 HFQPVIDGLQS--------ESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVD 305
             + +  G Q+        E+  A+A  +I  +I V   +   K   +  M +++    +
Sbjct: 157 RIK-INRGKQNNYRRTHVQEAVEAIASVII-SHIEVKDMNFRPKAVYVAHMARRVLMAKN 214

Query: 306 HTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRK---GKKLIQDEIENNGKKFDFFN 362
             S+ D+ D L N+ + L G L+ +      ED  +K     K+  D++ N   + + F+
Sbjct: 215 DPSLVDDRDYLGNKRLELAGQLLALL----FEDLFKKFCFDIKMNVDKVLNKRNRAEAFD 270

Query: 363 LANIKKVMEKNPSKQIGTSIET---MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFIS 419
              +  +   + ++ +  +I T    LK  R+         +RAG T    RL+++  + 
Sbjct: 271 AWTVMSMHSNHITQGMNRAISTGNWSLKRFRM---------ERAGVTHVLSRLSYIAALG 321

Query: 420 FFRAVHRGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDS 478
               +   + F   R  S  R L P  +G LC   TP+GE CGL+ ++     + +  D 
Sbjct: 322 MMTRI--SSQFEKTRKVSGPRALQPSQFGMLCLADTPEGEACGLVKNLALMTHITT-NDE 378

Query: 479 RGNIRDF 485
            G IR+ 
Sbjct: 379 EGPIRNL 385


>gi|238483555|ref|XP_002373016.1| DNA-directed RNA polymerase III, beta subunit, putative [Aspergillus
            flavus NRRL3357]
 gi|220701066|gb|EED57404.1| DNA-directed RNA polymerase III, beta subunit, putative [Aspergillus
            flavus NRRL3357]
          Length = 1218

 Score =  340 bits (871), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 198/517 (38%), Positives = 272/517 (52%), Gaps = 59/517 (11%)

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH EI P  +L  VA L PY  HNQSPRN YQC M KQ +G        R D  LY +  
Sbjct: 736  THLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVY 795

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
            PQ P+V++ T      D+ P G NA+VAV++Y+GYD+EDA++LNK SVDRG    Q+++ 
Sbjct: 796  PQKPMVKSRTIELTKYDQLPAGHNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFKK 855

Query: 748  ETIDLSDDGNKVDRGQKLFRRNKDAK-SLHSVIDSDGLPYVGQMIHPGEPYC--SIYDKT 804
               +L    N           + DA    H++++SDGL  VG+ ++ GE Y   S  D++
Sbjct: 856  SVANLKSYSNGTKDILMPPEYDNDAPIRKHALLESDGLAAVGEQVNAGEVYINKSTPDQS 915

Query: 805  TNSWRTNSRKGS--------------ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPII 850
              S    S  G               +  ++D V V    ++N  Q   +  R TR P +
Sbjct: 916  LASGFPGSDMGRPVKYTPTPMTYKLHDPAYIDQVLVSTTENEN--QLIKVLTRQTRRPEV 973

Query: 851  GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGG 910
            GDKFSSRHGQKGV   +    DMPF+   G+ PD+I+NPH FPSRMT+  +LE VA K G
Sbjct: 974  GDKFSSRHGQKGVVGIIADQADMPFTD-QGINPDIIMNPHGFPSRMTVGKMLELVAGKAG 1032

Query: 911  SLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTE 970
             L G+    T F  S                V+E+ ++L   GF+Y G + L SG+ G  
Sbjct: 1033 VLAGQHGYGTCFGGSP---------------VEEMSQILIDKGFSYGGKDYLTSGITGEA 1077

Query: 971  LTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLA 1030
            L   +F GP+YYQ+L+HMV DK   R+ G    +TRQP +GR R GG+R GEMERD L+A
Sbjct: 1078 LPFYVFTGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIA 1137

Query: 1031 HGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCH 1090
            +G + LL +RL   SD H  DVC  CG +    +                        C 
Sbjct: 1138 YGTSQLLLERLMISSDRHEIDVCEQCGFMGYLNW------------------------CQ 1173

Query: 1091 ACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
             C++S+ +  +A+PY  + L  EL +MN+   L+L D
Sbjct: 1174 RCKSSRSVVKMAIPYAAKLLIQELMSMNVTARLKLED 1210



 Score = 90.5 bits (223), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 110/463 (23%), Positives = 193/463 (41%), Gaps = 59/463 (12%)

Query: 38  CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
           CR    +Y   +  D  F+Y+     V +   + G+ PVML++ +C L      ++  L 
Sbjct: 177 CRLRDTTYAAPIQVD--FEYIRGRQRVKKTGCSIGRMPVMLRSSKCVLSDKTPAEMTVLD 234

Query: 98  EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
           E   + GGYFI+NG E+    VIL ++    + +      ++E            RK +S
Sbjct: 235 ECPLDPGGYFIVNGTEK----VILVQEQLSKNRIIVETDPKKEIVQASVTSSSNERKSKS 290

Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            + LK   L    V+     +     +P+ I+LKA+    D E+   L    D+ Y+   
Sbjct: 291 YIVLKKDKLY---VKHNVLSED----IPIVILLKAMGIHTDKEML-LLVAGIDKVYQ--- 339

Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQS--------ESYYA 269
                    E   I   E   L + T+ Q L  IG   + +  G Q+        E+  A
Sbjct: 340 ---------EDFAINFEEAIKLGIYTQQQALDWIGSRIK-INRGKQNNYRRTHVQEAVEA 389

Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
           +A  +I  +I V   +   K   +  M +++    +  S+ D+ D L N+ + L G L+ 
Sbjct: 390 IASVII-SHIEVKDMNFRPKAVYVAHMARRVLMAKNDPSLVDDRDYLGNKRLELAGQLLA 448

Query: 330 IYLKEKLEDWLRK---GKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIET-- 384
           +      ED  +K     K+  D++ N   + + F+   +  +   + ++ +  +I T  
Sbjct: 449 LL----FEDLFKKFCFDIKMNVDKVLNKRNRAEAFDAWTVMSMHSNHITQGMNRAISTGN 504

Query: 385 -MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLL 442
             LK  R+         +RAG T    RL+++  +     +   + F   R  S  R L 
Sbjct: 505 WSLKRFRM---------ERAGVTHVLSRLSYIAALGMMTRI--SSQFEKTRKVSGPRALQ 553

Query: 443 PESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDF 485
           P  +G LC   TP+GE CGL+ ++     + +  D  G IR+ 
Sbjct: 554 PSQFGMLCLADTPEGEACGLVKNLALMTHITT-NDEEGPIRNL 595


>gi|317139935|ref|XP_001817863.2| DNA-directed RNA polymerase III subunit RET1 [Aspergillus oryzae
            RIB40]
          Length = 1218

 Score =  340 bits (871), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 198/517 (38%), Positives = 272/517 (52%), Gaps = 59/517 (11%)

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH EI P  +L  VA L PY  HNQSPRN YQC M KQ +G        R D  LY +  
Sbjct: 736  THLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVY 795

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
            PQ P+V++ T      D+ P G NA+VAV++Y+GYD+EDA++LNK SVDRG    Q+++ 
Sbjct: 796  PQKPMVKSRTIELTKYDQLPAGHNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFKK 855

Query: 748  ETIDLSDDGNKVDRGQKLFRRNKDAK-SLHSVIDSDGLPYVGQMIHPGEPYC--SIYDKT 804
               +L    N           + DA    H++++SDGL  VG+ ++ GE Y   S  D++
Sbjct: 856  SVANLKSYSNGTKDILMPPEYDNDAPIRKHALLESDGLAAVGEQVNAGEVYINKSTPDQS 915

Query: 805  TNSWRTNSRKGS--------------ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPII 850
              S    S  G               +  ++D V V    ++N  Q   +  R TR P +
Sbjct: 916  LASGFPGSDMGRPVKYTPTPMTYKLHDPAYIDQVLVSTTENEN--QLIKVLTRQTRRPEV 973

Query: 851  GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGG 910
            GDKFSSRHGQKGV   +    DMPF+   G+ PD+I+NPH FPSRMT+  +LE VA K G
Sbjct: 974  GDKFSSRHGQKGVVGIIADQADMPFTD-QGINPDIIMNPHGFPSRMTVGKMLELVAGKAG 1032

Query: 911  SLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTE 970
             L G+    T F  S                V+E+ ++L   GF+Y G + L SG+ G  
Sbjct: 1033 VLAGQHGYGTCFGGSP---------------VEEMSQILIDKGFSYGGKDYLTSGITGEA 1077

Query: 971  LTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLA 1030
            L   +F GP+YYQ+L+HMV DK   R+ G    +TRQP +GR R GG+R GEMERD L+A
Sbjct: 1078 LPFYVFTGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIA 1137

Query: 1031 HGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCH 1090
            +G + LL +RL   SD H  DVC  CG +    +                        C 
Sbjct: 1138 YGTSQLLLERLMISSDRHEIDVCEQCGFMGYLNW------------------------CQ 1173

Query: 1091 ACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
             C++S+ +  +A+PY  + L  EL +MN+   L+L D
Sbjct: 1174 RCKSSRSVVKMAIPYAAKLLIQELMSMNVTARLKLED 1210



 Score = 90.5 bits (223), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 110/463 (23%), Positives = 193/463 (41%), Gaps = 59/463 (12%)

Query: 38  CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
           CR    +Y   +  D  F+Y+     V +   + G+ PVML++ +C L      ++  L 
Sbjct: 177 CRLRDTTYAAPIQVD--FEYIRGRQRVKKTGCSIGRMPVMLRSSKCVLSDKTPAEMTVLD 234

Query: 98  EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
           E   + GGYFI+NG E+    VIL ++    + +      ++E            RK +S
Sbjct: 235 ECPLDPGGYFIVNGTEK----VILVQEQLSKNRIIVETDPKKEIVQASVTSSSNERKSKS 290

Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            + LK   L    V+     +     +P+ I+LKA+    D E+   L    D+ Y+   
Sbjct: 291 YIVLKKDKLY---VKHNVLSED----IPIVILLKAMGIHTDKEML-LLVAGIDKVYQ--- 339

Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQS--------ESYYA 269
                    E   I   E   L + T+ Q L  IG   + +  G Q+        E+  A
Sbjct: 340 ---------EDFAINFEEAIKLGIYTQQQALDWIGSRIK-INRGKQNNYRRTHVQEAVEA 389

Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
           +A  +I  +I V   +   K   +  M +++    +  S+ D+ D L N+ + L G L+ 
Sbjct: 390 IASVII-SHIEVKDMNFRPKAVYVAHMARRVLMAKNDPSLVDDRDYLGNKRLELAGQLLA 448

Query: 330 IYLKEKLEDWLRK---GKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIET-- 384
           +      ED  +K     K+  D++ N   + + F+   +  +   + ++ +  +I T  
Sbjct: 449 LL----FEDLFKKFCFDIKMNVDKVLNKRNRAEAFDAWTVMSMHSNHITQGMNRAISTGN 504

Query: 385 -MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLL 442
             LK  R+         +RAG T    RL+++  +     +   + F   R  S  R L 
Sbjct: 505 WSLKRFRM---------ERAGVTHVLSRLSYIAALGMMTRI--SSQFEKTRKVSGPRALQ 553

Query: 443 PESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDF 485
           P  +G LC   TP+GE CGL+ ++     + +  D  G IR+ 
Sbjct: 554 PSQFGMLCLADTPEGEACGLVKNLALMTHITT-NDEEGPIRNL 595


>gi|196011451|ref|XP_002115589.1| hypothetical protein TRIADDRAFT_59462 [Trichoplax adhaerens]
 gi|190581877|gb|EDV21952.1| hypothetical protein TRIADDRAFT_59462 [Trichoplax adhaerens]
          Length = 1016

 Score =  340 bits (871), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 270/858 (31%), Positives = 393/858 (45%), Gaps = 127/858 (14%)

Query: 308  SVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLA--- 364
            S+ D+ D   N+ + L G L+ +  ++  + +  + K + +  I          NL    
Sbjct: 241  SILDDKDYYGNKRLELAGQLLALLFEDLFKKFNSELKSIAEKNIPKQRAGPVNMNLRFLE 300

Query: 365  -NIKKVMEKNPSKQIGTSIETMLKTGRLATQT-GLDLQQRAGYTVQAERLNFLRFISFFR 422
             +I K M ++   QI       L TG  + +   +D   RAG T    RL++L  +    
Sbjct: 301  FDIVKYMRQD---QITNGFNLALTTGNWSIKRYKMD---RAGVTQVLSRLSYLSALGMMT 354

Query: 423  AVHRGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGN 481
             +   + F   R  S  R L P  WG LCP  TP+GE CGL+ ++     + +  D +  
Sbjct: 355  RI--SSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDSDDKII 412

Query: 482  IRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV------------- 528
            I     +    + +L G  +  SLP         +  V ++G V+G              
Sbjct: 413  INLLFNLGVEDINLLSGEEL--SLPH--------IYIVYVNGYVLGAARNYKKLIRTFRL 462

Query: 529  ----IPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL-GGAYPGLYLFTSPPKFVR 583
                I ++++++++  +        S+ P+      + ++L GG     Y+     K   
Sbjct: 463  LRRDIKTAQVKRILYLIANYINEFVSIYPNH-TYRQINIALDGGRVCRPYIIVKSEK--- 518

Query: 584  PVRNISLPSEESQNIELIGPFEQ--------VFMEIRCPDGGDGGRRNAFPATHEEIHPT 635
            P+  I    E SQ I     F +        V  E  C         N+   TH +I P 
Sbjct: 519  PLVTIKHIEELSQGIRSFDDFIRNGLIEYLDVNEENDCNIALYESDINS-KTTHLDIEPF 577

Query: 636  GMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRT 695
             +L V A L P+  HNQSPRN YQC M KQ +G      + R D  LY L  PQ P+V+T
Sbjct: 578  TILGVCAGLIPFPHHNQSPRNTYQCAMGKQAIGTIGYNQRNRIDTVLYQLVYPQVPLVKT 637

Query: 696  NTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRG-----MCHGQIYQTETI 750
             T      D+ P G NAI+AV++Y+GYD+EDA+ILNK+SVDRG          I++ + +
Sbjct: 638  KTIDLIEFDKLPAGQNAIIAVMSYSGYDIEDAVILNKASVDRGPQADAQTGKTIWKHKVL 697

Query: 751  D---LSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNS 807
            D   +   G KV+  Q L       KS+ SV  S  +   GQ +   E     Y     +
Sbjct: 698  DADGICMPGEKVESKQILIN-----KSIPSVT-STPIAGTGQKLLQPE-----YIDMPMT 746

Query: 808  WRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQL 867
            +R     G    +V+ V +   N +    K     R +R P IGDKFSSRHGQKGVC  +
Sbjct: 747  YR-----GPTDAYVENVMISSNNDEAFLIKT--LLRSSRRPEIGDKFSSRHGQKGVCGLI 799

Query: 868  WPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVK 927
                DMPF+       D I+NPH FPSRMT+  L+E +  K   L GKF   T F     
Sbjct: 800  VNQEDMPFT-------DQIMNPHGFPSRMTVGKLMEVIGGKASLLDGKFRYGTAF----- 847

Query: 928  KTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRH 987
              +GD   D  ++L+D          ++Y G + L SG+ G  L+  IF GPVYYQRL+H
Sbjct: 848  --DGDKLEDLCQTLIDY--------NYSYAGKDYLTSGITGEGLSAYIFFGPVYYQRLKH 897

Query: 988  MVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDY 1047
            MV DK   R+ G    +TRQP +GR R GG+R GEMERD L+A+G + LL +RL   SD 
Sbjct: 898  MVLDKMHARAKGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIAYGTSMLLVERLMISSDA 957

Query: 1048 HVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVF 1107
               DVC+ CG +  + +                        CH C +S  + ++ +PY  
Sbjct: 958  FEVDVCNNCGLLAYSKW------------------------CHYCHSSCHVSSLQIPYAC 993

Query: 1108 RYLAAELAAMNIKITLQL 1125
            + L  EL +MNI   L L
Sbjct: 994  KLLFQELQSMNIIPRLSL 1011



 Score = 53.1 bits (126), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 2/80 (2%)

Query: 37  HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
            CR   ++Y+  ++ D+E  Y      + R++   G+ PVML++  C L G    +L   
Sbjct: 106 ECRLRDLTYSAPIVVDIE--YTRGAQRIRRQKLPIGRVPVMLRSSICVLNGKSPVELAKY 163

Query: 97  KEEAAEMGGYFILNGLERVF 116
            E   + GGYFI+ G+E+V 
Sbjct: 164 NECPIDPGGYFIVKGVEKVI 183


>gi|83765718|dbj|BAE55861.1| unnamed protein product [Aspergillus oryzae RIB40]
          Length = 1180

 Score =  339 bits (870), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 198/517 (38%), Positives = 272/517 (52%), Gaps = 59/517 (11%)

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH EI P  +L  VA L PY  HNQSPRN YQC M KQ +G        R D  LY +  
Sbjct: 698  THLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVY 757

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
            PQ P+V++ T      D+ P G NA+VAV++Y+GYD+EDA++LNK SVDRG    Q+++ 
Sbjct: 758  PQKPMVKSRTIELTKYDQLPAGHNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFKK 817

Query: 748  ETIDLSDDGNKVDRGQKLFRRNKDAK-SLHSVIDSDGLPYVGQMIHPGEPYC--SIYDKT 804
               +L    N           + DA    H++++SDGL  VG+ ++ GE Y   S  D++
Sbjct: 818  SVANLKSYSNGTKDILMPPEYDNDAPIRKHALLESDGLAAVGEQVNAGEVYINKSTPDQS 877

Query: 805  TNSWRTNSRKGS--------------ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPII 850
              S    S  G               +  ++D V V    ++N  Q   +  R TR P +
Sbjct: 878  LASGFPGSDMGRPVKYTPTPMTYKLHDPAYIDQVLVSTTENEN--QLIKVLTRQTRRPEV 935

Query: 851  GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGG 910
            GDKFSSRHGQKGV   +    DMPF+   G+ PD+I+NPH FPSRMT+  +LE VA K G
Sbjct: 936  GDKFSSRHGQKGVVGIIADQADMPFTD-QGINPDIIMNPHGFPSRMTVGKMLELVAGKAG 994

Query: 911  SLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTE 970
             L G+    T F  S                V+E+ ++L   GF+Y G + L SG+ G  
Sbjct: 995  VLAGQHGYGTCFGGSP---------------VEEMSQILIDKGFSYGGKDYLTSGITGEA 1039

Query: 971  LTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLA 1030
            L   +F GP+YYQ+L+HMV DK   R+ G    +TRQP +GR R GG+R GEMERD L+A
Sbjct: 1040 LPFYVFTGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIA 1099

Query: 1031 HGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCH 1090
            +G + LL +RL   SD H  DVC  CG +    +                        C 
Sbjct: 1100 YGTSQLLLERLMISSDRHEIDVCEQCGFMGYLNW------------------------CQ 1135

Query: 1091 ACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
             C++S+ +  +A+PY  + L  EL +MN+   L+L D
Sbjct: 1136 RCKSSRSVVKMAIPYAAKLLIQELMSMNVTARLKLED 1172



 Score = 90.1 bits (222), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 110/463 (23%), Positives = 193/463 (41%), Gaps = 59/463 (12%)

Query: 38  CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
           CR    +Y   +  D  F+Y+     V +   + G+ PVML++ +C L      ++  L 
Sbjct: 139 CRLRDTTYAAPIQVD--FEYIRGRQRVKKTGCSIGRMPVMLRSSKCVLSDKTPAEMTVLD 196

Query: 98  EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
           E   + GGYFI+NG E+    VIL ++    + +      ++E            RK +S
Sbjct: 197 ECPLDPGGYFIVNGTEK----VILVQEQLSKNRIIVETDPKKEIVQASVTSSSNERKSKS 252

Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            + LK   L    V+     +     +P+ I+LKA+    D E+   L    D+ Y+   
Sbjct: 253 YIVLKKDKLY---VKHNVLSED----IPIVILLKAMGIHTDKEML-LLVAGIDKVYQ--- 301

Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQS--------ESYYA 269
                    E   I   E   L + T+ Q L  IG   + +  G Q+        E+  A
Sbjct: 302 ---------EDFAINFEEAIKLGIYTQQQALDWIGSRIK-INRGKQNNYRRTHVQEAVEA 351

Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
           +A  +I  +I V   +   K   +  M +++    +  S+ D+ D L N+ + L G L+ 
Sbjct: 352 IASVII-SHIEVKDMNFRPKAVYVAHMARRVLMAKNDPSLVDDRDYLGNKRLELAGQLLA 410

Query: 330 IYLKEKLEDWLRK---GKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIET-- 384
           +      ED  +K     K+  D++ N   + + F+   +  +   + ++ +  +I T  
Sbjct: 411 LL----FEDLFKKFCFDIKMNVDKVLNKRNRAEAFDAWTVMSMHSNHITQGMNRAISTGN 466

Query: 385 -MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLL 442
             LK  R+         +RAG T    RL+++  +     +   + F   R  S  R L 
Sbjct: 467 WSLKRFRM---------ERAGVTHVLSRLSYIAALGMMTRI--SSQFEKTRKVSGPRALQ 515

Query: 443 PESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDF 485
           P  +G LC   TP+GE CGL+ ++     + +  D  G IR+ 
Sbjct: 516 PSQFGMLCLADTPEGEACGLVKNLALMTHITT-NDEEGPIRNL 557


>gi|126132998|ref|XP_001383024.1| DNA-directed RNA polymerase III [Scheffersomyces stipitis CBS 6054]
 gi|126094849|gb|ABN64995.1| DNA-directed RNA polymerase III [Scheffersomyces stipitis CBS 6054]
          Length = 1155

 Score =  339 bits (870), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 201/521 (38%), Positives = 273/521 (52%), Gaps = 61/521 (11%)

Query: 626  PATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHL 685
            P TH EI P  +L  VA L PY  HNQSPRN YQC M KQ +G        R D  LY +
Sbjct: 675  PVTHLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFRRIDTLLYFM 734

Query: 686  QTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIY 745
              PQ P+V+T T      D+ P G NA VAV++Y+GYD+EDA++LNKSS+DRG    Q+ 
Sbjct: 735  VYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCQVV 794

Query: 746  QTETIDLSDDGNKVDRGQKLFRRNKDAKSL--HSVIDSDGLPYVGQMIHPGEPYCSIYDK 803
            +  TI L    N         R ++D + +  H  +  DGL  +G  +  G+ Y + +  
Sbjct: 795  RKNTIQLKRYPNHTKDIVSGMRVDEDGEPIFPHKALGPDGLGEIGARVENGQVYANKFVP 854

Query: 804  T---------------TNSWRTNSR--KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTR 846
            T                 S R  +   KG E  +VD V   M  S N      +  R TR
Sbjct: 855  TNAGESVLGHNEQMAGAESHREAAAYYKGPEPSYVDQVM--MSVSDNDQALIKVLLRQTR 912

Query: 847  NPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVA 906
             P +GDKFSSRHGQKGVC  +    D+PF+   G+ PD+I+NPH FPSRMT+  ++E ++
Sbjct: 913  RPELGDKFSSRHGQKGVCGIIVQQEDLPFND-DGISPDIIMNPHGFPSRMTVGKMIELIS 971

Query: 907  AKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGV 966
             K G L+G     T F        G    D SK LV++        GF+Y G ++LYSG+
Sbjct: 972  GKAGVLNGSLEYGTCFG-------GSKLEDMSKILVEK--------GFSYSGKDMLYSGI 1016

Query: 967  YGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERD 1026
             G  L   IF GP+YYQ+L+HMV DK   R+ G    +TRQP +GR R GG+R GEMERD
Sbjct: 1017 TGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERD 1076

Query: 1027 SLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKK 1086
             ++A+GA+ LL +RL   SD    DVC+ CG +   ++                      
Sbjct: 1077 CVIAYGASQLLLERLMISSDAFEVDVCNKCGLMGYNSW---------------------- 1114

Query: 1087 VTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
              C  C++ + +  + +PY  + L  EL +MNI   L+LGD
Sbjct: 1115 --CTTCKSFEHVIKMTIPYAAKLLFQELLSMNIAPRLKLGD 1153



 Score = 99.8 bits (247), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 113/517 (21%), Positives = 213/517 (41%), Gaps = 91/517 (17%)

Query: 9   FEPLRELVRHHIESFDYMLDEGLSEMF--------------------------------- 35
           F  ++ LV+ H++SF+Y +D  L ++                                  
Sbjct: 48  FLKVKGLVKQHLDSFNYFVDVDLKKIIRANELVLSDVDPEFYLKYLDIRVGHKSSSAPGT 107

Query: 36  -------DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGA 88
                    CR   ++Y+  +  DVE  Y      ++ +    G+ PVML++ +C L G 
Sbjct: 108 KEVILPPHECRLRDLTYSAPIYVDVE--YTRGRKIIMHKDLEIGRMPVMLRSNKCILDGI 165

Query: 89  DSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVV 148
           + +++    E   + GGYF++NG E+V   +++ +Q     ++  +  D ++G    +V 
Sbjct: 166 NDKQMAKFDECPLDPGGYFVVNGTEKV---ILVQEQLSKNRIIVEA--DEKKGIVQASVT 220

Query: 149 IRC-VRKDQSSVTLK--LYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHL 205
                RK ++ V  K    YL + S+            +P+ IVLKA   T+DLEI   L
Sbjct: 221 SSTHERKSKTYVITKNDKIYLKHNSISED---------IPIVIVLKAAGITSDLEIL-QL 270

Query: 206 TCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV------- 258
            C  D +Y+            +   +   E   L + T+ Q L ++G+  + +       
Sbjct: 271 VCGSDPQYQ------------DLFVVNFEEAAKLEVFTQQQALNYVGKRVKTIRRAGAAK 318

Query: 259 IDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQN 318
           +  LQ E   A+A TVI       L    +K   +  M +++   + +  + D+ D + N
Sbjct: 319 LSVLQ-EGIEAIATTVIAHITVADLQ-FREKALYIATMARRVVMTMHNPKMVDDRDYVGN 376

Query: 319 QEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQI 378
           + + L G L+++  ++  + +    K  I   ++   +  +F  L +I        S  I
Sbjct: 377 KRLELAGQLMSLLFEDLFKKFNSDFKANIDKILKKPSRTSEFDALLSINI-----HSNNI 431

Query: 379 GTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS- 437
              +   + TG  + +      +RAG T    RL+++  +     +   + F   R  S 
Sbjct: 432 TMGLNRAISTGNWSLKRF--KMERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRKVSG 487

Query: 438 VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVAS 474
            R L P  +G LC   TP+GE CGL+ ++     + +
Sbjct: 488 PRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITT 524


>gi|407926681|gb|EKG19645.1| DNA-directed RNA polymerase subunit 2 domain 6 [Macrophomina
            phaseolina MS6]
          Length = 1189

 Score =  339 bits (870), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 197/521 (37%), Positives = 276/521 (52%), Gaps = 63/521 (12%)

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH EI P  +L  VA L PY  HNQSPRN YQC M KQ +G        R D  LY +  
Sbjct: 704  THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFTRIDTLLYLMVY 763

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
            PQ P+V+T T      D+ P G NA VAV++Y+GYD+EDA+++NK+S DRG    Q+++ 
Sbjct: 764  PQQPMVKTRTIELIKYDKLPAGQNATVAVMSYSGYDIEDALVINKASCDRGFGRCQVFKK 823

Query: 748  ETIDLSDDGNKVDRGQKLFRRNKDAKSLH----SVIDSDGLPYVGQMIHPGEPYCSIY-- 801
             T  L    N          RN D   ++     V +SDG+  VG ++   + Y + +  
Sbjct: 824  ATTTLKSYANGSQDKITGPERNADGTPVNPRHKKVGESDGIAEVGMLLEKDDVYLNKFVP 883

Query: 802  -------------DKTTNSWRTN--SRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTR 846
                          K    +R    S K  +  +VD V +  +N  N P    I+ R TR
Sbjct: 884  VQTNPVGLEEQQRRKQPTEFRPTPMSYKLPDPAYVDKVLL-TENESNTP-VIKIQTRQTR 941

Query: 847  NPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVA 906
             P +GDKFSSRHGQKGV   +   IDMPF+   G+ PD+I+NPH FPSRMT+  +LE ++
Sbjct: 942  RPELGDKFSSRHGQKGVVGIIAEQIDMPFND-QGICPDIIMNPHGFPSRMTVGKMLELLS 1000

Query: 907  AKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGV 966
             K G ++G+    T F  S                 +++ ++L   GF+Y G ++L SG+
Sbjct: 1001 GKAGVMNGELQYGTCFGGSK---------------AEDMSQILLEAGFSYSGKDMLTSGI 1045

Query: 967  YGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERD 1026
             G  L   +F GP+YYQ+L+HMV DK   R+ G    +TRQP +GR R GG+R GEMERD
Sbjct: 1046 TGECLPAYVFFGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERD 1105

Query: 1027 SLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKK 1086
             L+A+GA+ LL +RL   SD H  DVC  CG +    +                      
Sbjct: 1106 CLIAYGASQLLLERLMLSSDAHECDVCERCGMMGYQGW---------------------- 1143

Query: 1087 VTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
              C +C++SKG+  + +PY  + L  EL +MN+K +L+LGD
Sbjct: 1144 --CQSCRSSKGVVRMTIPYAAKLLIQELLSMNVKASLKLGD 1182



 Score = 86.7 bits (213), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 107/513 (20%), Positives = 206/513 (40%), Gaps = 91/513 (17%)

Query: 9   FEPLRELVRHHIESFDYMLDEGLSEMF--------------------------------- 35
           F  ++ LV+ HI+SF+Y +D  L E+                                  
Sbjct: 71  FLKVKGLVKQHIDSFNYFVDVQLKEILRANQYVYSDVDDKFFWRYTDIRVLKPCRVEEEN 130

Query: 36  ----------DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHL 85
                     + CR   ++Y   ++ DVE  Y      V R+  + G+ P+ML++ +CHL
Sbjct: 131 VRGIQSTITPNECRLRDMTYAAPIVVDVE--YKKGNVKVKRKGIHIGRMPIMLRSNKCHL 188

Query: 86  QGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDK 145
            G    ++  L E + + GGYFI  G E+V   +++ +Q     ++  S +    G    
Sbjct: 189 WGKSESQMGQLGECSIDPGGYFITRGQEKV---ILVQEQLSKNRVIVESMK----GIIQA 241

Query: 146 AVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHL 205
           +V+   V +          Y+L     L          +PV I  KA+   ++ EI   L
Sbjct: 242 SVISFTVDRKSKG------YVLLKKGLLYLKHNCFTEDIPVVIAFKAMGIQSEHEIL-LL 294

Query: 206 TCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHF----QPVID- 260
               D  Y+ E         +E+         +  + T+ Q L+++G+      +P+ + 
Sbjct: 295 VAGDDSAYQDEFAVNFEACYNEK---------NERINTQHQALEYVGQRTRQLRKPIGNR 345

Query: 261 ---GLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQ 317
               LQ E+  A++  ++     V +N    K   + +M +++   +    + D+ D + 
Sbjct: 346 QARNLQQEAIDALSNMMMSHVPVVGMN-FRPKALYIAYMTRRVLMAIHDPKMVDDRDYVG 404

Query: 318 NQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIE--NNGKKFDFFNLANIKKVMEKNPS 375
           N+ + L G ++ +  ++  + +  + K  I   ++  N   +FD ++         +   
Sbjct: 405 NKRLELAGQMMALLFEDSFKSFNYQFKAAIDKILKKPNRAAEFDAYDHI-------QTHG 457

Query: 376 KQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
             I   +E  + TG  + +      +RAG T    RL+++  +     +   + F   R 
Sbjct: 458 WSITAGMERAIATGNWSLKRF--RMERAGITHVLSRLSYISALGMMTRI--TSQFEKTRK 513

Query: 436 TS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMT 467
            S  R L P  +G LC   TP+GE CGL+ ++ 
Sbjct: 514 VSGPRALQPSQFGMLCTSDTPEGEACGLVKNLA 546


>gi|145512048|ref|XP_001441946.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124409207|emb|CAK74549.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1214

 Score =  339 bits (869), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 307/1181 (25%), Positives = 516/1181 (43%), Gaps = 158/1181 (13%)

Query: 19   HIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRER-------FNF 71
            H++ F+    E +  M    R    S   K+  +V  Q  +     + E+         F
Sbjct: 109  HVDKFE----EEIFPMIARLRDLTYSRQLKIDLEVTMQQRNKRDGTIEEKSKQQFKGLPF 164

Query: 72   GQFPVMLKTRRCHLQ-GADSQKLVSLKEEAAE----MGGYFILNGLERVFRS-------- 118
             + P+M+++R C LQ      +L+ L+ +  E     GGYFIL G E+V  +        
Sbjct: 165  FKLPIMVRSRFCSLQKDPKDAELIQLRIQNGECGFDQGGYFILRGSEKVIVAQERIANNV 224

Query: 119  VILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQ 178
            V++ K         +  R + + +++  V    +R  Q++  ++       SV+     Q
Sbjct: 225  VLVFKSKIVNKPWVAEIRSQPDLFSNPNVFKVELRYIQNTPVIRC------SVKQFNSTQ 278

Query: 179  GKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIIL--AEV 236
            G    +P+  + +AL  ++D EI   +       Y  E   +G P++      +    E 
Sbjct: 279  G----IPLFTLFRALGISSDQEILERIV------YNLEDEFMG-PMLEMLYGSLQEGGEY 327

Query: 237  QDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHL----NDNNDKFNL 292
            +D  L     CL+ IG   +   +    E+    A+ +I   I  H+       + K   
Sbjct: 328  EDEEL-----CLRWIGNKIKKA-ENQDPETLIQEAKKLINKNILPHIGVSTESRDRKAYF 381

Query: 293  LIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIE 352
            L +++ +L +     +  D+ D    + + + G ++    K   E + +  KK ++  I 
Sbjct: 382  LGYIVHRLLNASLGKTDQDDRDHYGKKRLDMAGAMMMGVFKTSFEQFKQNSKKALEKYIN 441

Query: 353  NN----GKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLA-TQTGLDLQQRAGYTV 407
                  G++    N+     +      +QI   I+  L TG    ++ G  ++     T+
Sbjct: 442  GGRRGRGQQTKIENMRQPDDIKSFFDGEQISKDIDNALATGNWGRSKEGQVVKTGVAQTL 501

Query: 408  QAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMT 467
            + E  +    +S  R ++   +   ++ +  R+L    +GF+CP  TP+G+  G++ +++
Sbjct: 502  KRE-TSLFATLSHLRRMNAPIN-PQMKLSKPRQLHNTHFGFICPAETPEGQKIGIVKNLS 559

Query: 468  STCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGP------PAVLSVLL 521
                V++         D        L  LI V        ++  G       P +  VL+
Sbjct: 560  LMTTVSN---------DLQSKDKETLLKLIMVSQQNDFDFILLQGDFQAQDIPRMTKVLV 610

Query: 522  DGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKF 581
            DG  +G   +   E+ +   + L+ +  S IP ++ + +  ++       + ++T   + 
Sbjct: 611  DGNWIGF--TRNPEQFIHEFKNLRSAEESYIPIEVSINFDYVN-----KEIRIYTDAGRC 663

Query: 582  VRP---VRNISLPSEESQNIELIGPFEQVFMEIRCP-----------------DGGDGGR 621
            +RP   V+N  L   +   +  I  +E++ ++ +C                  D    G 
Sbjct: 664  MRPLFIVQNNKLKLMKGV-LNQINDWEEL-LKNKCVELLDVEEEEGSLIAMDIDIMMRGT 721

Query: 622  RNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQK 681
            +N    TH EIHP  M  V A++ P+++HNQ PRN  Q  M KQ MG +      R D  
Sbjct: 722  QNFKRYTHCEIHPCMMFGVCASVIPFANHNQGPRNTLQSAMGKQAMGLNSTNFNIRFDTL 781

Query: 682  LYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCH 741
            ++ L  PQ P+  +       ++E P G N + ++  +TGY+ ED++I+N+ ++DRG   
Sbjct: 782  VHILHYPQKPLASSRAVDFITVNEVPIGINCVTSIACFTGYNQEDSIIINQYAIDRGFFR 841

Query: 742  GQIYQT--ETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCS 799
               Y+T  E+ D   D     +  K    N   K L   +DSDG+   G  +   EP   
Sbjct: 842  SVFYRTYKESEDKDPDNFTETKITKPIGDNFAGK-LFIKLDSDGIVPPGTKVDEEEPIIG 900

Query: 800  ---IYDK---TTNSWRTNSRKGS------ESVFVDYVAVDMKNSKNLPQKANIRFRHTRN 847
               I D     T + + N+++ S      E   VD V +  +N K   +   ++ R  R 
Sbjct: 901  KELIIDNIMLNTANGQKNTKECSLLTRRAERGVVDSVLIS-ENQKGY-KLVKVKVRSLRI 958

Query: 848  PIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAA 907
            P IGDKF SRHGQKG C   +   D+P++ + G+ PDL INPH  PSRMTI  L+E +++
Sbjct: 959  PQIGDKFCSRHGQKGTCGMTYRQEDLPYT-LVGISPDLTINPHCIPSRMTIGHLIECLSS 1017

Query: 908  KGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVY 967
            K  S+ G+F DATPFA               + LV+++   L   G+   G EV+ +   
Sbjct: 1018 KLASIKGQFNDATPFA---------------QILVNDIANELHKVGWQKWGNEVMTNPYT 1062

Query: 968  GTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDS 1027
            G   +  IF+GP YYQRLRH+V DK   RS G +  ITRQP  GR R GG+RFGEMERD 
Sbjct: 1063 GNMFSIPIFVGPTYYQRLRHLVDDKMYARSRGPVTGITRQPTHGRSRKGGLRFGEMERDC 1122

Query: 1028 LLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKV 1087
            +++HG A  L +R +  SD     VCS CG    A                      ++ 
Sbjct: 1123 IISHGTAKFLKERTYDVSDAFRVHVCSKCGMFAVANL------------------ENQEF 1164

Query: 1088 TCHACQTSKGMET---VAMPYVFRYLAAELAAMNIKITLQL 1125
             C+ C+          V MPY  + L  EL +MNI   L+ 
Sbjct: 1165 YCNLCKNQNNQNKIYQVQMPYAAKTLIQELISMNIAPRLKF 1205


>gi|70990294|ref|XP_749996.1| DNA-directed RNA polymerase III, beta subunit [Aspergillus fumigatus
            Af293]
 gi|66847628|gb|EAL87958.1| DNA-directed RNA polymerase III, beta subunit, putative [Aspergillus
            fumigatus Af293]
 gi|159130477|gb|EDP55590.1| DNA-directed RNA polymerase III, beta subunit, putative [Aspergillus
            fumigatus A1163]
          Length = 1200

 Score =  338 bits (868), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 198/520 (38%), Positives = 275/520 (52%), Gaps = 66/520 (12%)

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH EI P  +L  VA L PY  HNQSPRN YQC M KQ +G        R D  LY +  
Sbjct: 719  THLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVY 778

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
            PQ P+V++ T      D+ P G NA+VAV++Y+GYD+EDA++LNK SVDRG    Q+++ 
Sbjct: 779  PQKPMVKSRTIELVKYDQLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRK 838

Query: 748  ETIDLSDDGNKV-DRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN 806
               +L    N   DR       N      H+++++DGL  VG+ ++ GE Y    +K+T 
Sbjct: 839  YVTNLKSYSNGTKDRLNPPTYENGAPIRKHALLEADGLAAVGEQVNAGEVYI---NKSTP 895

Query: 807  SWRTNSRKGSES------------------VFVDYVAVDMKNSKNLPQKANIRFRHTRNP 848
                 S  GS++                   ++D V   ++ ++N  Q   +  R TR P
Sbjct: 896  EQSNLSGIGSDAGRPVQYTPTPMTYKLHDPAYIDKVMYSVQENEN--QLVKVLVRQTRRP 953

Query: 849  IIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
             +GDKFSSRHGQKGV   +   +DMPF+  +G+ PD+I+NPH FPSRMT+  +LE VA K
Sbjct: 954  EVGDKFSSRHGQKGVVGIIADQVDMPFTD-SGINPDIIMNPHGFPSRMTVGKMLELVAGK 1012

Query: 909  GGSLHGKFMDATPFANSVKKTNGDTGTDE-SKSLVDELGEMLRTCGFNYHGVEVLYSGVY 967
             G L G     T F        G T  +E S+ L+D         GF+Y G + L SG+ 
Sbjct: 1013 AGVLAGHHGYGTCF--------GGTPVEEASRVLIDH--------GFSYGGKDYLTSGIT 1056

Query: 968  GTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDS 1027
            G  L   +F GP+YYQ+L+HMV DK   R+ G    +TRQP +GR R GG+R GEMERD 
Sbjct: 1057 GEALPFYVFTGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDC 1116

Query: 1028 LLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKV 1087
            L+A+G + LL +RL   SD H  DVC  CG +    +                       
Sbjct: 1117 LIAYGTSQLLLERLMISSDRHEIDVCEQCGFMGYLNW----------------------- 1153

Query: 1088 TCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
             C  C++S+ +  + +PY  + L  EL +MN+   L+L D
Sbjct: 1154 -CQRCKSSRSVVKMTIPYAAKLLIQELMSMNVTARLKLDD 1192



 Score = 93.2 bits (230), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 111/480 (23%), Positives = 200/480 (41%), Gaps = 53/480 (11%)

Query: 21  ESFDYMLDEGLSEMFDH-CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLK 79
           E  D   D   S++  H CR    +Y   ++  V F+Y+     V R+  + G+ P+ML+
Sbjct: 143 EPQDVTPDATPSDVSPHECRLRDTTYAAPIL--VNFEYIRGRQRVTRKGVSIGRMPIMLR 200

Query: 80  TRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRR 139
           + +C L      ++  L E   + GGYFI+NG E+    VIL ++    + +      ++
Sbjct: 201 SSKCVLANKTPSEMTVLNECPLDPGGYFIVNGTEK----VILVQEQLSKNRIIVETDPKK 256

Query: 140 EGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDL 199
           E            RK +S + LK   L    V+     +     +P+ I+L+A+    + 
Sbjct: 257 EIVQASVTSSSNERKSKSYIILKKDKLY---VKHNVLSED----IPIVILLRAMGIHTEQ 309

Query: 200 EIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVI 259
           E+   L    D  Y+ +              I   E   L + T+ Q L  IG   +  I
Sbjct: 310 EML-LLVAGVDSLYQDD------------FAINFEESIKLGIYTQQQALDWIGARIK--I 354

Query: 260 DGLQS---ESYYAVAETVIRDYIFVHLNDNNDKFN----LLIFMLQKLFSLVDHTSVSDN 312
           +  QS    ++   A   I   I  H+   N  F      +  M +++    +  S+ D+
Sbjct: 355 NRKQSSYRRTHIQEAVEAIASVIISHIEVKNMNFRPKAVYVAHMARRVLMAKNDPSLVDD 414

Query: 313 PDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEK 372
            D L N+ + L G L+ +  ++  + +    K  I D++ N   + + F+   +  +   
Sbjct: 415 RDYLGNKRLELAGQLLALLFEDLFKKFCFDIKMNI-DKVLNKRNRAEQFDAWTVMSMHSN 473

Query: 373 NPSKQIGTSIET---MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGAS 429
           + ++ +  +I T    LK  R+         +RAG T    RL+++  +     +   + 
Sbjct: 474 HITQGMNRAISTGNWSLKRFRM---------ERAGVTHVLSRLSYIAALGMMTRI--SSQ 522

Query: 430 FAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKM 488
           F   R  S  R L P  +G LCP  TP+GE CGL+ ++     + +  D  G I++   M
Sbjct: 523 FEKTRKVSGPRALQPSQFGMLCPADTPEGEACGLVKNLALMTHITT-NDEEGPIKNLVFM 581


>gi|358339203|dbj|GAA47313.1| DNA-directed RNA polymerase III subunit RPC2 [Clonorchis sinensis]
          Length = 1141

 Score =  338 bits (868), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 199/524 (37%), Positives = 274/524 (52%), Gaps = 64/524 (12%)

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH EI P  +L VVA L PY DHNQSPRN YQC M KQ +G      + R D   Y +  
Sbjct: 650  THMEIDPATILGVVAGLIPYPDHNQSPRNTYQCAMGKQAIGTVALNQQIRFDTLQYQMVY 709

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
            PQ P+V++ T      DE P G NAIVA+++Y+GYD+EDA+I+N++S+DRG     +Y+ 
Sbjct: 710  PQKPLVQSKTIQMMHFDELPAGQNAIVAIMSYSGYDVEDALIVNRASLDRGFARACVYRR 769

Query: 748  ETIDLSDDGNKV-DR--GQKLFRRNKDAKSLHSVIDSDGLPYVGQ-------MIHPGEPY 797
              + L    N V DR  G  + R     +    ++ +DG  +VG        +++   P 
Sbjct: 770  AGVHLKMHENAVYDRLMGPSVDRETGLPRRGDELLQADGTAFVGARASDRQILVNKEMPV 829

Query: 798  CSIYDKTTNSWRTNSRKGSESVF-------VDYVAVD--------MKNSKNLPQKANIRF 842
              +     N+ +     G+            DY  ++           S+       +  
Sbjct: 830  VKVNAAQDNAGQLGLHGGTHESMTEFRRCPADYKGIEPSYVEKVMFSTSEGNQAVVKVLL 889

Query: 843  RHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLL 902
            R TR P +GDKFSSRHGQKGV   +    DMPFS + G+ PD+I+NPH FPSRMT+  LL
Sbjct: 890  RQTRRPEVGDKFSSRHGQKGVVGLIVRQEDMPFS-MHGLVPDVIMNPHGFPSRMTVGKLL 948

Query: 903  ESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVL 962
            E + +K G++ G+  D + F+       GD+    S+ L++         G +Y G EVL
Sbjct: 949  ELLGSKAGAIEGRIRDGSAFS-------GDSAESLSRVLIEH--------GHHYLGKEVL 993

Query: 963  YSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGE 1022
            YSGV G  L   I+ GPVYYQRL+HMV DK   RS G +  +TRQP +GR R GG+R GE
Sbjct: 994  YSGVTGAPLEAYIYFGPVYYQRLKHMVMDKVHARSRGPVTALTRQPTEGRSREGGLRIGE 1053

Query: 1023 MERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPAR 1082
            MERD  +A+G + LL +RL T SD + A VC  CG + T+                    
Sbjct: 1054 MERDCFIAYGTSQLLVERLLTSSDVYDACVCEKCGLLATS-------------------- 1093

Query: 1083 APKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLG 1126
               +V C  C++S+ + TV MPY  + L  EL  M I   L LG
Sbjct: 1094 ---RVWCQYCRSSRQVVTVRMPYACKLLFQELMCMRILPRLSLG 1134



 Score = 94.0 bits (232), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 110/472 (23%), Positives = 196/472 (41%), Gaps = 67/472 (14%)

Query: 38  CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
           CR   ++Y G+++ DV F  +     V +     G+ PVMLK+  C L G    +L+ LK
Sbjct: 86  CRLRDLTYAGEILVDVTF--MRQNEIVSKRGVLIGRMPVMLKSSVCILNGKTPSELMRLK 143

Query: 98  EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
           E   + GGYFI+ G E+V   +++ +Q     ++     D + G            K ++
Sbjct: 144 ECPLDPGGYFIIGGTEKV---ILMQEQMSKNRLIVEE--DSKRGLVCSVTSSSAQTKSKT 198

Query: 158 SVTLK--LYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
           ++ +K   ++L + S  +          +PV I+ KA+  T+D EI +         Y  
Sbjct: 199 NIIMKDDKFFLAHNSFTVD---------VPVAILFKAMGITSDQEILH---------YIG 240

Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHI-----GEHFQPVIDG--------- 261
            + ++ +  V       L +  + S+ TRL   + +        F+P +           
Sbjct: 241 TEESIWANFVPS-----LKQCLESSVHTRLDACRWLQSRLQQRRFRPGLTSGKPTRPDCP 295

Query: 262 LQSESYYAVAETVIRDYIFVHLNDNNDKFNL---LIFMLQKLFSLV---DHTSVSDNPDS 315
           +  E      +  IRD I  H+    +KFN     +F+ Q +  L+   +H    D+ D 
Sbjct: 296 VSEEDVVLDMQRFIRDIIITHV--EMEKFNFAPRALFLGQMVRYLILANEHQIPPDDRDF 353

Query: 316 LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPS 375
             N+ I L G L+ +  ++  + +  +   L   +I+   +   F    +IK  M     
Sbjct: 354 YGNKRIELAGSLLALLFEDVFKTF-NEDMWLTVSKIDTKRRCTPFDISRHIKTWMITEQL 412

Query: 376 KQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
            +  +S   ++K  R+          R G T    RL+++  +     +   ++F   R 
Sbjct: 413 NRAISSGNWIIKRFRM---------MRHGVTQIVSRLSYVAALGHMTRM--TSTFEKTRK 461

Query: 436 TS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFS 486
            S  R +    WGF+CP  TP+GE CGL+ ++   C V    D    IR  S
Sbjct: 462 VSGPRSIHASQWGFVCPSDTPEGEACGLVKNVALMCHVTVEMDDTELIRLLS 513


>gi|353239819|emb|CCA71715.1| probable RPA135-DNA-directed RNA polymerase I, 135 KD subunit,
            partial [Piriformospora indica DSM 11827]
          Length = 410

 Score =  338 bits (868), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 178/397 (44%), Positives = 239/397 (60%), Gaps = 56/397 (14%)

Query: 773  KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSK 832
            + +   ID+DGLP VG  ++PG+P  +  D TT   R    KG E+ ++D V +   ++ 
Sbjct: 25   EEIRKTIDTDGLPSVGVKVNPGDPIAAYEDDTTGRTRIIKYKGDETGYIDTVRLIGGDAG 84

Query: 833  NLP-QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHA 891
            +   QK ++  R TR+P+IGDKFSSRHGQKGVCSQ WP +DMPFS  +G++PD+IINPHA
Sbjct: 85   DTELQKIHVTIRITRSPVIGDKFSSRHGQKGVCSQKWPSVDMPFS-ESGIQPDVIINPHA 143

Query: 892  FPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRT 951
            FPSRMTI M +ES+A K G++HG   DATPF  S           E  + +D  G+ L  
Sbjct: 144  FPSRMTIGMFVESMAGKAGAMHGLAQDATPFQFS-----------EDDTAIDYFGKQLLA 192

Query: 952  CGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKG 1011
             G+NY+G E +YSG+ G E   +I++G VYYQRLRHMV DK+QVR+TG +D +TRQP+KG
Sbjct: 193  AGYNYYGNEPMYSGITGEEFAADIYLGVVYYQRLRHMVLDKYQVRTTGPVDPVTRQPVKG 252

Query: 1012 RKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATF------- 1064
            RKR GGIRFGEMERD+L+AHG ++LL DRL  CSDY  A VC  CGS+++  +       
Sbjct: 253  RKRAGGIRFGEMERDALIAHGTSFLLQDRLMNCSDYSTAWVCRTCGSLISLGYEDVSVGG 312

Query: 1065 ----------IHPQKRAIREIGGLPPARAPKKVTCHA----------------------- 1091
                        P     R    L  + A +  T  A                       
Sbjct: 313  ELIGSSSHFPTGPSGEYCRVCRALEESEAERARTSLAEGRSDTDPRVRTDLRVSLSSSNL 372

Query: 1092 --CQTSKG-METVAMPYVFRYLAAELAAMNIKITLQL 1125
               Q S+G M+ +A+PYVFRYL AELA+M I ++L++
Sbjct: 373  LSQQGSRGDMDVIAIPYVFRYLCAELASMGIAVSLEV 409


>gi|361131372|gb|EHL03070.1| putative DNA-directed RNA polymerase III subunit RPC2 [Glarea
            lozoyensis 74030]
          Length = 1184

 Score =  338 bits (867), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 192/518 (37%), Positives = 277/518 (53%), Gaps = 60/518 (11%)

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH EI P  +L  VA L PY  HNQSPRN YQC M KQ +G        R D  LY +  
Sbjct: 703  THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFSRIDTLLYLMVY 762

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
            PQ P+V++ T      D+ P G NA VAV++++GYD+EDA++LNK+S DRG    Q+++ 
Sbjct: 763  PQQPMVKSRTIELIKYDKLPAGQNATVAVMSFSGYDIEDALVLNKASCDRGFGRCQVFRK 822

Query: 748  ETIDLSDDGNKV-DR-GQKLFRRNKDAK--SLHSVIDSDGLPYVGQMIHPGEPYCSI--- 800
                     N+  DR G K       +K    H+++ SDG+  VG+ ++ GE Y +    
Sbjct: 823  YATQFRKYPNRTQDRIGDKQMDERDPSKPSKKHAILGSDGMALVGEQVNSGETYLNKEVP 882

Query: 801  ---------YDKTTNSWRTN--SRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPI 849
                      D  TN  +    + +  +  ++D + +    ++ +  K  ++ R TR P 
Sbjct: 883  INTGGNGIGSDVGTNEHKPAPMTYRLPDPSYIDKIMISQTENETMVIK--VQTRQTRRPE 940

Query: 850  IGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKG 909
            +GDKFSSRHGQKGV   +    DMPF+  +G+ PD+I+NPH FPSRMT+  +LE ++ K 
Sbjct: 941  LGDKFSSRHGQKGVVGIIVNQEDMPFAD-SGVTPDIIMNPHGFPSRMTVGKMLELLSGKA 999

Query: 910  GSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGT 969
            G L+G     T F  S                VD++G++L   GF+Y G + + SG+ G 
Sbjct: 1000 GVLNGSLEYGTAFGGSN---------------VDDMGDILIKNGFSYSGKDFVTSGITGE 1044

Query: 970  ELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLL 1029
             L   IF GP+YYQ+L+HMV DK   RS G    +TRQP +GR R GG+R GEMERD L+
Sbjct: 1045 SLPAYIFFGPIYYQKLKHMVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEMERDCLI 1104

Query: 1030 AHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTC 1089
            A+GA+ LL +RL   SD H  D+C +CG +    +                        C
Sbjct: 1105 AYGASQLLLERLMLSSDAHEVDICEVCGMMGFQGW------------------------C 1140

Query: 1090 HACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
              C+++ G+  + MPY  + L  EL +MN+ + L+L D
Sbjct: 1141 QTCKSTAGVTRMTMPYAAKLLVQELLSMNVLVRLRLED 1178



 Score =  114 bits (286), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 118/475 (24%), Positives = 208/475 (43%), Gaps = 60/475 (12%)

Query: 21  ESFDYMLDEGLSEMF-DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLK 79
           E  DY   + L+E+  + CR   ++Y   +   V F+Y        R     G+ P+MLK
Sbjct: 121 ERLDYGDRKALNEITPNECRLRDMTYAAPIR--VTFRYTKGKQMTRRSHIPIGRMPIMLK 178

Query: 80  TRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRR 139
           +  C L G + +++  + E A + GGYFI+NG E+V   +++ +Q     ++  +  D +
Sbjct: 179 SATCRLAGKNDRQMAQMNECALDPGGYFIVNGTEKV---ILVQEQLSKNRVIVEA--DPK 233

Query: 140 EGYTDKAVVIRC-VRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--LPVGIVLKALVDT 196
           +G T  +V      RK +S VT+K         +   WLQ       +P+ IVLKA+   
Sbjct: 234 KGITSASVTSSTHERKSKSYVTMK---------KDRIWLQHNILTEPVPIVIVLKAMGIQ 284

Query: 197 NDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHF- 255
           +D E+   L    DE Y+ E              ++  E     + ++ Q L+++G    
Sbjct: 285 SDHEMM-FLVAGEDEDYQDE------------FAVMFEEAAKAGVFSQQQALEYLGARVK 331

Query: 256 ---QPVIDGLQ------SESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDH 306
              +P + G         ++  A+A  +I     V L D   K   + FM++++   V  
Sbjct: 332 MGSKPRVGGAPPRRNHIQDALEALANIIITHVPVVGL-DFRPKALYICFMVRRVLMAVKD 390

Query: 307 TSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEI---ENNGKKFDFFNL 363
             + D+ D + N+ + L G L+++ L E L        K+  D++   +N   +FD FN 
Sbjct: 391 PKLVDDRDYVGNKRLELAGQLLSL-LFEDLFKKFNTDLKMNIDKVLSKKNRTSEFDAFNH 449

Query: 364 ANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRA 423
                   ++    I   +   + TG  + +      +RAG T    RL+++  +     
Sbjct: 450 M-------QSHGNYITLGMNRAISTGNWSVKRF--KMERAGVTHVLSRLSYISALGMMTR 500

Query: 424 VHRGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYD 477
           +   + F   R  S  R L P  +G LCP  TP+GE CGL+ ++     + +Y D
Sbjct: 501 I--SSQFEKTRKVSGPRALQPSQFGMLCPSDTPEGEACGLVKNLALMTHITTYDD 553


>gi|320581721|gb|EFW95940.1| DNA-directed RNA polymerase III [Ogataea parapolymorpha DL-1]
          Length = 1138

 Score =  338 bits (866), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 203/520 (39%), Positives = 270/520 (51%), Gaps = 63/520 (12%)

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH EI P  +L  VA L PY  HNQSPRN YQC M KQ +G        R D  LY +  
Sbjct: 660  THLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFRRIDTLLYLMCY 719

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
            PQ P+V+T T      D+ P G NA VAV++Y+GYD+EDA++LNK+S+DRG    Q+ + 
Sbjct: 720  PQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKASIDRGFGRCQVLRK 779

Query: 748  ETIDLSDDGNKVDRGQKLFRRNKDAKSL--HSVIDSDGLPYVGQMIHPGEPYCSIYDKTT 805
             T  L    N         R  +D K +  H  +  DGL  VG  +  G+ Y    +K  
Sbjct: 780  TTAVLKRYPNHSKDILAGMRVKEDGKPIFQHEALGPDGLAEVGVEVQSGQTYI---NKCV 836

Query: 806  NSWRTNSRKGSESVF----------VDYVA--------VDMKNSKNLPQKANIRFRHTRN 847
             +  T S  G +             V+Y A        V M  S N      +  R TR 
Sbjct: 837  PTNATESVVGGQPTINQQQQHRETPVNYRAPVSSVVDQVMMSVSDNDQALIKVLLRQTRR 896

Query: 848  PIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAA 907
            P +GDKFSSRHGQKGVC  +    DMPF+   G+ PD+I+NPH FPSRMT+  +LE V+ 
Sbjct: 897  PELGDKFSSRHGQKGVCGIIVQQEDMPFND-DGISPDIIMNPHGFPSRMTVGKMLELVSG 955

Query: 908  KGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVY 967
            K G L G     T F        G    D S+ L+D+        GFNY G ++LYSG+ 
Sbjct: 956  KAGVLDGSLQYGTCFG-------GSKLEDMSQILIDK--------GFNYSGKDMLYSGIT 1000

Query: 968  GTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDS 1027
            G  L   IF GP+YYQ+L+HMV DK   R+ G    +TRQP +GR R GG+R GEMERD 
Sbjct: 1001 GEALQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDC 1060

Query: 1028 LLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKV 1087
            ++A+GA+ LL +RL   SD    DVC+ CG +   ++                       
Sbjct: 1061 VIAYGASQLLLERLMLSSDAFDVDVCNSCGLMGYNSW----------------------- 1097

Query: 1088 TCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
             C +C+TS+G+  + +PY  + L  EL +MNI   L++ D
Sbjct: 1098 -CPSCKTSEGVVKMTIPYAAKLLFQELISMNIAPRLKMAD 1136



 Score =  101 bits (252), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 117/513 (22%), Positives = 206/513 (40%), Gaps = 97/513 (18%)

Query: 9   FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
           F  ++ LV+ H++SF++ +D  L ++                                  
Sbjct: 33  FLQVKGLVKQHLDSFNFFVDTDLKKIIQANEKVLSDVDPEFYLKYLDIRVGYKSGGNPNE 92

Query: 37  --------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGA 88
                    CR   ++Y+  +  DVE  Y      ++      G+ P+ML++ +C L G 
Sbjct: 93  TEVLLPPHECRLRDLTYSAPIYVDVE--YTRGRKIIIHRDLEIGRMPIMLRSNKCILNGK 150

Query: 89  DSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVV 148
           +  ++  L E   + GGYFI+NG E+    VIL ++    + +     +++         
Sbjct: 151 NEAQMAYLNECPLDPGGYFIVNGTEK----VILVQEQLSKNRIIVEADEKKNIVQASVTS 206

Query: 149 IRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
               RK ++ V  K     N  + L      +E  +P+ IVLKA    +DLEI   L C 
Sbjct: 207 STHERKSKTYVVTK-----NDKIYLKHNSISEE--IPIVIVLKAAGLVSDLEIL-QLVCG 258

Query: 209 YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ-------PVIDG 261
            D  Y+            +   +   E   L + ++ + L++IG   +       P +  
Sbjct: 259 NDSVYQ------------DLFAVNFEEAAKLGIYSQKEALEYIGRKVKTIRRLNAPKLSI 306

Query: 262 LQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEI 321
           LQ E   A+A TVI  +I V   D  +K   +  M +++   + +  + D+ D + N+ +
Sbjct: 307 LQ-EGIEAIATTVIA-HITVENLDFKEKALYIAIMTRRVIMAMHNPKLVDDRDYVGNKRL 364

Query: 322 LLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKK------FDFFNLANIKKVMEKNPS 375
            L G L+++      ED  +K     +  ++   KK      FD     NI        S
Sbjct: 365 ELAGQLMSLL----FEDLFKKFNNDFKANLDKILKKPSRVSEFDALLHINIH-------S 413

Query: 376 KQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
             I T +   + TG  + +      +RAG T    RL+++  +     +   + F   R 
Sbjct: 414 SNITTGLNRAISTGNWSLKRF--KMERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRK 469

Query: 436 TS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMT 467
            S  R L P  +G LC   TP+GE CGL+ ++ 
Sbjct: 470 VSGPRALQPSQFGMLCTSDTPEGEACGLVKNLA 502


>gi|357289763|gb|AET73076.1| RNA polymerase II 140 kDa subunit [Phaeocystis globosa virus 12T]
 gi|357292563|gb|AET73899.1| RNA polymerase II 140 kDa subunit [Phaeocystis globosa virus 14T]
          Length = 1202

 Score =  338 bits (866), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 320/1223 (26%), Positives = 522/1223 (42%), Gaps = 191/1223 (15%)

Query: 12   LRELVRHHIESFDYMLDEGLSE---MFD-------------------------------- 36
            L++L+RH IES++Y+++  L +   MF+                                
Sbjct: 49   LKQLIRHQIESYNYLVNTQLEQTIAMFNPIRICSEHDWEKEYNLHRLVAHVTLENFNIHR 108

Query: 37   ----------------HCRQAKISYTGKLMADVEFQYLDAGSP---------VVRERFNF 71
                              R    +Y G +  D+  +Y                V +  + 
Sbjct: 109  PQVYENNGATKIMFPQEARLRNFTYAGAMTVDLNIKYTVRNGENYKNTQTYNKVLKNIHI 168

Query: 72   GQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMV 131
            G+ P+ML++  C L            E   + GGYFI+NG E+   +     +N  ++  
Sbjct: 169  GKLPIMLRSDICVLSQYKHLNTDQTGECKMDPGGYFIINGSEKTCLAQERAAEN-QIACF 227

Query: 132  RSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGF----WLQGKEYL--LP 185
              S  + +  +  +   ++C+      ++ K   L   +   GF    +LQ       +P
Sbjct: 228  NISKNNTKWTWNAE---MKCI-PHWKCISPKQINLYRSTKDNGFGNSIYLQIPRLKNPIP 283

Query: 186  VGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK--GAVGSPLVSERVKIILAEVQDLSLTT 243
            + I+ +A    +D ++   +    D+K  +    G  GS +V     +   +  +  ++ 
Sbjct: 284  LFIIFRAFNIISDKDVCEKVILDIDDKKHRRMLYGLQGS-IVDANTCLTYEDALNYIISN 342

Query: 244  RLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSL 303
             +    ++ +       G + +  +A+   VI + IF H      K  +L +M  KL   
Sbjct: 343  VIYTPLNVDKE-----TGYKRKHDFALE--VINNDIFPHCRTTAQKVYMLGYMTNKLLQT 395

Query: 304  VDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKF--DFF 361
                    + DS  N+ + L G LI    +  L   ++  +K +  EI +   K   D+ 
Sbjct: 396  SFGWMEPTDRDSYLNKRVDLTGSLINNLFRNYLNKLVKDMQKQVVREINSGSWKSNEDYE 455

Query: 362  NLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFF 421
            N+ N   + +   S  I   I+  L TG    +       + G      RL ++  IS  
Sbjct: 456  NIINSTNIYKIIKSVTIENGIKRALATGDFGIKQIN--SNKVGVAQVLNRLTYISSISHL 513

Query: 422  RAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGN 481
            R V+     +G +    R+L   SWGFLCP  TP+G   G++ +++    V         
Sbjct: 514  RRVNTPIDKSG-KLVPPRRLHNSSWGFLCPAETPEGASVGIVKNLSYMTHVTI------- 565

Query: 482  IRDFSKMRTSILR--VLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVA 539
                    T+IL   ++  V  I +L    KS    V  V ++G  VG+  + E  ++  
Sbjct: 566  -----PTNTTILYDYIMPMVTDIETLGDNAKSLHDKV-KVFINGVWVGI--TEEPLELFK 617

Query: 540  HLRRLKVSA-----ASVIPDD--LEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPS 592
            +++  K         SVI D   LE+     +     P L +  +   + + + +     
Sbjct: 618  NIKEKKYKGIINIYTSVIFDCKLLEIKVCNDAGRLTRPVLKVENNAVLYTKELFHKVRAG 677

Query: 593  EESQN------------IELIGPFEQ----VFMEIRCPDGGDGGRRNAFPATHEEIHPTG 636
            E + N            IE I   EQ    + ME       D   +  +  +H EIHP+ 
Sbjct: 678  ELNWNDLLYSGKIPQSAIEYIDSNEQNNTMIAMEPDQLTATDS--KYVYHYSHCEIHPST 735

Query: 637  MLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTN 696
            +  VVA+  P+ ++NQSPRN YQ  M KQ +G  V     R D+  Y L  P  P+V T 
Sbjct: 736  IFGVVASCIPFPENNQSPRNTYQSAMGKQALGMYVTNYDNRMDKTAYVLSYPMRPLVDTR 795

Query: 697  TYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETI-DLSDD 755
                  ++  P+G   IVA+++++GY+ ED+++ NK S+DRG+    IY TE   D    
Sbjct: 796  LMDIIKLNTIPSGEQVIVAIMSHSGYNQEDSVLFNKGSIDRGLFLATIYHTEKDEDKKLY 855

Query: 756  GNKVDRGQKLFRRNKDAK-SLHSVIDSDGLPYVGQMIH----------PGEPYCSIYDKT 804
            GN+  R +    + K+ K + +  I+S GL     ++           P +   + Y KT
Sbjct: 856  GNEEMRCKPDKTKTKNMKFANYDKINSQGLVPENTLVEDRDIIIAKVLPIKENKNDYTKT 915

Query: 805  TN-SWRTNSRKGSESVFVDYVAVDMKNSKNLPQK-------ANIRFRHTRNPIIGDKFSS 856
               +  ++  +  E  F+D         KN  +          +R R  R P+IGDKFSS
Sbjct: 916  IKYTDESHVHRTGEETFID---------KNYSESNGDGYNFCKVRLRSVRRPVIGDKFSS 966

Query: 857  RHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKF 916
            RHGQKG    +  + DMPF+   G++PD+IINPHA PSRMTIA L E++  K     G +
Sbjct: 967  RHGQKGTIGNIIEEKDMPFTA-DGLKPDIIINPHAIPSRMTIAQLKETLLGKVLIQMGLY 1025

Query: 917  MDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIF 976
             D T F               SK  + ++   L+  G+  +G EV+Y+ + G ++   IF
Sbjct: 1026 GDGTSF---------------SKFKIGDIASELQKLGYESNGNEVMYNALTGEQMPSSIF 1070

Query: 977  IGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYL 1036
            IGP +YQRL+HMV+DK   RS G M  +TRQP +GR R GG+RFGEMERD +++HGA+  
Sbjct: 1071 IGPAFYQRLKHMVNDKQHSRSIGPMVNLTRQPAEGRARDGGLRFGEMERDCMISHGASRF 1130

Query: 1037 LHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSK 1096
               RL+  SD +   VC+ CG  L A++   Q+  I                C+ C+   
Sbjct: 1131 TKGRLYDASDAYSVHVCNKCG--LIASYNKAQQIHI----------------CNTCENRT 1172

Query: 1097 GMETVAMPYVFRYLAAELAAMNI 1119
                V +PY  + +  EL  MNI
Sbjct: 1173 DFRYVEIPYSCKLMFQELYTMNI 1195


>gi|426201159|gb|EKV51082.1| hypothetical protein AGABI2DRAFT_113824 [Agaricus bisporus var.
            bisporus H97]
          Length = 1183

 Score =  337 bits (865), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 301/1070 (28%), Positives = 477/1070 (44%), Gaps = 144/1070 (13%)

Query: 71   FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSM 130
             G+ P+ML++  C L+G   Q L  L E   + GGYFI+NG E+    V++ ++    + 
Sbjct: 174  IGKVPIMLRSTFCILRGLQDQDLYDLNECPYDSGGYFIINGSEK----VLIAQERMATNH 229

Query: 131  VRSSFRDRREGYTDKAVVIRCVRKDQSSVT---LKLYYLLNGSVRLGFWLQGK-EYL--- 183
            V    + +       A +   V K   +++   +K+++  N    LG  ++    Y+   
Sbjct: 230  VYVFAKAQPSPINFLAEIRSAVEKGGKTISQFQVKMFH-RNQERSLGNVMKATIPYIKVD 288

Query: 184  LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTT 243
            +P+ +V + L   +D +I  H+  CYD +   +   +  P + +   I   EV       
Sbjct: 289  IPIWVVFRGLGVISDRDILEHI--CYDMQ-DAQMLEMLKPCIDDGFVIQDREV------- 338

Query: 244  RLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLN----DNNDKFNLLIFMLQK 299
                L  IG   +    GL  E     A+ +++  +  H++      + K     +M+ +
Sbjct: 339  ---ALDFIGN--RGTTTGLSRERRIRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHR 393

Query: 300  LFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFD 359
            L          D+ D    + + L G L+    +       +   + +Q  +E + +   
Sbjct: 394  LLLAALERRELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKE--- 450

Query: 360  FFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFIS 419
             FNLA   K       + I   ++  L TG    Q    +  +AG +    R  +   +S
Sbjct: 451  -FNLALAVK------HQTITNGLKYSLATGNWGDQKK-SMSSKAGVSQVLNRYTYASTLS 502

Query: 420  FFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMT--STCRVASYYD 477
              R  +      G +    R+L    WG +CP  TP+G+ CGL+ ++   S   V SY  
Sbjct: 503  HLRRCNTPLGREG-KIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSY-- 559

Query: 478  SRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV--IPSSEIE 535
                          ++  L   G+  SL +   S  P    V ++G  +GV   P++ ++
Sbjct: 560  -----------SAPVIEFLEEWGL-ESLEENAHSTSPCT-KVFVNGVWMGVHRDPANLVK 606

Query: 536  KVVAHLRRLKVS-AASVIPDDLEVGY-VPLSLGGAYPGLYLFTSPPKFV--RPVRNISLP 591
             +    R+  +S   SV+ D  E    +    G     L++  +    +  R +R ++  
Sbjct: 607  TIKKLRRKDDISPEVSVVRDIREKELRIYTDAGRVCRPLFIVENQQLLLGKRHIRWLNSG 666

Query: 592  SEESQN------------IELIGPFEQVFMEIRC----------------PDGGDG---- 619
            S++  N            IEL+   E+  + I                  P   DG    
Sbjct: 667  SDDEGNEYKWEQLIKGGVIELLDAEEEETVMISMTPEDLENSRLQAAGVDPHANDGDFDP 726

Query: 620  -GRRNAFPATHEEIH----PTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQAL 674
              R  A    H   H    P+ +L + A++ P+ DHNQSPRN YQ  MAKQ MG  +   
Sbjct: 727  AARLKAGTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMAKQAMGIYLTNF 786

Query: 675  KFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSS 734
              R D     L  PQ P+  T +       E P G NAIVA+L Y+GY+ ED++I+N+SS
Sbjct: 787  LIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSS 846

Query: 735  VDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAK-----SLHSVIDSDGLPYVGQ 789
            +DRG+    IY    +DL +  + + + ++  +  +D         +  ++ DGL   G 
Sbjct: 847  IDRGLFRS-IYYRSYMDL-EKKSGIQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGT 904

Query: 790  -------MIHPGEPYCSIYDKTTNSWRTNSR-------KGSESVFVDYVAVDMKNSKNLP 835
                   +I    P     ++     RT++R       K +E   VD V +   NS+   
Sbjct: 905  GVRGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTEIGIVDQVLI-TTNSEG-- 961

Query: 836  QK-ANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPS 894
            QK   +R R TR P IGDKF+SRHGQKG     +   DMPF+   G+ PDLIINPHA PS
Sbjct: 962  QKFVKVRVRATRIPQIGDKFASRHGQKGTVGITYRQEDMPFTA-EGIVPDLIINPHAIPS 1020

Query: 895  RMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGF 954
            RMTI  L+E + +K  +L G   DATPF +                 V+ +   LR  G+
Sbjct: 1021 RMTIGHLVECLLSKVATLIGNEGDATPFTDLT---------------VESVSTFLRQKGY 1065

Query: 955  NYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKR 1014
               G+EV+Y G  G +L  +I++GP YYQRL+HMV DK   R+ G +  +TRQP++GR R
Sbjct: 1066 QSRGLEVMYHGHTGRKLQAQIYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSR 1125

Query: 1015 GGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATF 1064
             GG+RFGEMERD +++HG A  L +RL   SD +   VC +CG    A  
Sbjct: 1126 DGGLRFGEMERDCMISHGIAGFLKERLFEASDAYRLHVCDICGLTAIANL 1175


>gi|339906100|ref|YP_004732897.1| hypothetical protein WIV_gp114 [Wiseana iridescent virus]
 gi|308051971|gb|ADO00458.1| hypothetical protein [Wiseana iridescent virus]
          Length = 1127

 Score =  337 bits (864), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 320/1207 (26%), Positives = 529/1207 (43%), Gaps = 195/1207 (16%)

Query: 8    DFEPLRELVRHHIESFDYMLDEGLSEMFDH------------------------------ 37
            DF     LV+H I++F++   +GL  + ++                              
Sbjct: 27   DFFKTNGLVKHQIDTFNWFTSKGLKNIINNEPSIKYESNKYDNYTLKFSNICVEPPTIID 86

Query: 38   ------------CRQAKISYTGKLMADV--EFQYLDAGSPVVRERFN--FGQFPVMLKTR 81
                         R   +SYTG +  D+    +  +   P + E++     + P+ML + 
Sbjct: 87   NDRTIRPLYPQEARNKDLSYTGNVCVDIIETIESNEGKPPQINEQYRVPIAKIPIMLLSD 146

Query: 82   RCHLQGADSQKLVSLK-EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRRE 140
             CHL+    Q+  SL     A+ GGYFI+NG ERV  S +    N P+  V+S+      
Sbjct: 147  TCHLRQFTPQENESLNGHSEADQGGYFIINGKERVLISQVRKAYNKPLCFVKST------ 200

Query: 141  GYTDKAVVIRCVRKD-------QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKAL 193
              + K  V+ C  +         +SV +K+   +   + +   L+GK   +PVGI+ K+L
Sbjct: 201  --SQKEDVLICEMRSMCDETFHSTSVQVKM---IKNKIVVSLKLKGKVVDIPVGIIFKSL 255

Query: 194  VDTNDLEIFNHLTCCYD--EKYKKEKGAVGSPLVSERVKIILAEVQDLS--LTTRLQCLQ 249
                D + F+HL   +D  +KY +    + +    E      A   D S   +     L 
Sbjct: 256  GFHPDTQ-FHHL---FDLPKKYNRYLETIKNNCFEEFSTTEGAASSDESNDESDSEDDLV 311

Query: 250  HIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDK---FNLLIFMLQK-LFSLVD 305
             +  +     D     +   + +++  D +F HL   + K    +LLI M++K L +L+ 
Sbjct: 312  KVFRNVSVTADKEGILTMEDIQKSLDMD-LFPHLGITSTKKQRIDLLILMVKKYLLTLMG 370

Query: 306  HTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLAN 365
               V DN D   ++ +   G L   Y   +L    +K +K    +I+N  +K D  N   
Sbjct: 371  DLPV-DNRDDYNHKRVETAGELY--YFLFRL--LYKKFQKTCVAQIKN--RKPDISNFLR 423

Query: 366  IKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVH 425
                     +  I T I     +G    Q    ++      V   +++ L   S  R V 
Sbjct: 424  ---------TSGITTGILYSFSSGYWGVQRNAYIRTGVSQVVNP-KVSLLANYSSLRRVV 473

Query: 426  RGASFAG--LRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIR 483
               S  G   +T+ +R++ P S   +CPV TP+G+  G + +M+  C V +   +   + 
Sbjct: 474  IPESKDGKEAKTSEIRQIHPSSSFLICPVETPEGKGVGTVLNMSIFCSVTTGISTCEIMD 533

Query: 484  DFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEI--EKVVAHL 541
                 +  IL             K  K      L++L++G      P S++     + +L
Sbjct: 534  SIDHFQDLIL------------CKCRKPNKSNCLTILINGS-----PFSKLGHANTINNL 576

Query: 542  RRLKVSAASVIPDD-LEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNIS---------LP 591
              +   + S++ +  L++             + +F+ P + +RPV +++         +P
Sbjct: 577  NFMGDKSISIVVNKHLKI-------------IEIFSDPGRLIRPVFDLNKIIKKSGELIP 623

Query: 592  S----EESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPY 647
            S     E+Q I+ +    +V       +  D            E+HP GM  +VA + P+
Sbjct: 624  SFNWFLENQLIKYVD-INEVITNCVAIEPLDIVENPKSKYNLMELHPIGMFGIVAGIIPF 682

Query: 648  SDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYP 707
            SD  QS RN +   M KQ +GF V     + +   + L  PQ P+V T+     G++EYP
Sbjct: 683  SDRTQSARNCFYTSMVKQAIGF-VPCHNLKTETVSHTLNYPQKPLVTTDIAEFNGLNEYP 741

Query: 708  TGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFR 767
             G NAIVA+  YTGY+ ED++ILNK+S++RG+     Y T T + + +G   +R      
Sbjct: 742  NGINAIVAIACYTGYNQEDSVILNKASIERGLFGTTTYNTFTAEETKNGIVEERIDIPID 801

Query: 768  RNKDAKSLHSVIDSDGLPYVGQMIHPGEPYC---SIYDKTTNSWRTNS----RKGSESVF 820
              K   + + ++   G+  + Q +  G+      +I +K       ++    ++G E  +
Sbjct: 802  SVKVRDNNYGLLSDSGIVRLRQQVKKGDVLIGRITIKNKNEQEKVVDNSIVVQQGEEG-Y 860

Query: 821  VDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTG 880
            VD +  ++ +     +K  I     R P IGDKF S   QKG C  ++   DMPF+  +G
Sbjct: 861  VDRITDNIVDG---CRKVKIVIGQLRIPEIGDKFCSGMAQKGTCGMIYAQEDMPFTQ-SG 916

Query: 881  MRPDLIINPHAFPSRMTIAMLLESVAAKG--GSLHGKFMDATPFANSVKKTNGDTGTDES 938
            M PD+IINP+  PSRMTI  ++ +V  K    +   KF    PF             + S
Sbjct: 917  MTPDIIINPNCIPSRMTINQIIATVMGKLYLTNPQSKFKQGNPFM------------ENS 964

Query: 939  KSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRST 998
             ++++EL + L   GF+  G E +Y G  G  +  +IFIGP YY RL+HMV DK   RS 
Sbjct: 965  STILNELCDELTKHGFDSTGGETMYCGFTGRRIKSKIFIGPTYYHRLKHMVKDKMHARSH 1024

Query: 999  GTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGS 1058
            G +  + RQP  GR +GGG+RFGEME+D +L HGA   L++R+  CSD    DVC+ CG 
Sbjct: 1025 GQVTTLHRQPNCGRSQGGGLRFGEMEKDCILVHGATQFLNERMFLCSDPFQIDVCTNCGM 1084

Query: 1059 VLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMN 1118
            + +    H +                    C+ C  S  ++   +PY  + L  EL  M 
Sbjct: 1085 ISST---HHK--------------------CNVC-GSFNIKKCNIPYSCKNLFQELNGMG 1120

Query: 1119 IKITLQL 1125
            IKI ++L
Sbjct: 1121 IKIKIEL 1127


>gi|354546082|emb|CCE42811.1| hypothetical protein CPAR2_204540 [Candida parapsilosis]
          Length = 1149

 Score =  337 bits (864), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 199/526 (37%), Positives = 275/526 (52%), Gaps = 58/526 (11%)

Query: 618  DGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFR 677
            D G       TH EI P  +L  VA L PY  HNQSPRN YQC M KQ +G        R
Sbjct: 664  DIGENPNATVTHLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFRR 723

Query: 678  ADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDR 737
             D  LY +  PQ P+V+T T      D+ P G NA VAV++Y+GYD+EDA++LNKSS+DR
Sbjct: 724  IDTLLYFMVYPQQPMVKTKTIELINYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSLDR 783

Query: 738  GMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSL--HSVIDSDGLPYVGQMIHPGE 795
            G    Q+ +  T+ L    N         R +++ + +  H  +  DGL  VG  I  G+
Sbjct: 784  GFGRCQVVRKNTVQLKKYPNHTKDILSGMRVDENDEPIFPHRALGPDGLGEVGSRIENGQ 843

Query: 796  PYCSIYDKTTNSWRT--------NSR------KGSESVFVDYVAVDMKNSKNLPQKANIR 841
             Y +    T +   +        N R      KG E  +VD V   M  S N      + 
Sbjct: 844  VYANKCVPTNSGDSSLGQPQQVENHREAPLFYKGPEPSYVDQVM--MSVSDNDQALIKVL 901

Query: 842  FRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAML 901
             R TR P +GDKFSSRHGQKGVC  +    D+PF+   G+ PD+I+NPH FPSRMT+  +
Sbjct: 902  LRQTRRPELGDKFSSRHGQKGVCGIIVQQEDLPFND-DGISPDIIMNPHGFPSRMTVGKM 960

Query: 902  LESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEV 961
            +E ++ K G L+G     T F  S                ++E+ ++L   GF+Y G ++
Sbjct: 961  IELISGKAGVLNGSLEYGTCFGGSK---------------LEEMSKILVEKGFSYSGKDM 1005

Query: 962  LYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFG 1021
            LYSG+ G  L   IF GP+YYQ+L+HMV DK   R+ G    +TRQP +GR R GG+R G
Sbjct: 1006 LYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLG 1065

Query: 1022 EMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPA 1081
            EMERD ++A+GA+ LL +RL   SD    DVC+ CG +   ++                 
Sbjct: 1066 EMERDCVIAYGASQLLLERLMISSDAFEVDVCNKCGLMGYNSW----------------- 1108

Query: 1082 RAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
                   C  C++++ +  + +PY  + L  EL +MNI   L+LGD
Sbjct: 1109 -------CTTCKSAENIIKMTIPYAAKLLFQELLSMNIAPRLRLGD 1147



 Score =  103 bits (257), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 115/511 (22%), Positives = 212/511 (41%), Gaps = 93/511 (18%)

Query: 9   FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
           F  ++ LV+ H++SF+Y +D  L ++                                  
Sbjct: 43  FLKIKGLVKQHLDSFNYFVDVDLKKILKANSLVLSDVDPDFYVKYIDIRVGHKSTSPPGT 102

Query: 37  --------HCRQAKISYTGKLMADVEFQYLDAGSPVVRE-RFNFGQFPVMLKTRRCHLQG 87
                    CR   ++Y+  +  DVE+     G  ++R      G+ P+ML++ +C L G
Sbjct: 103 KEVILPPHECRLRDLTYSAPIYVDVEYT---RGRKIIRHYDLEIGRMPIMLRSNKCMLDG 159

Query: 88  ADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAV 147
            D + +  + E   + GGYFI+NG E+V   +++ +Q     ++  +  D ++G    +V
Sbjct: 160 MDDKMMAQVDECPLDPGGYFIVNGTEKV---ILVQEQLSKNRIIVEA--DEKKGIVQASV 214

Query: 148 VIRC-VRKDQSSVTLK--LYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNH 204
                 RK ++ V  K    YL + S+            +P+ IVLKA   T+DLEI   
Sbjct: 215 TSSTHERKSKTYVITKNDKIYLKHNSISED---------IPIVIVLKAAGVTSDLEIL-Q 264

Query: 205 LTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ-------P 257
           L C  +  Y+            +   +   E   L + T+ Q L ++G+  +       P
Sbjct: 265 LVCGSNSNYQ------------DLFVVNFEEAAKLEVFTQQQALLYLGKRVKTIRRAGAP 312

Query: 258 VIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQ 317
            +  LQ E   A+A T+I     V L    +K   +  M +++   + +  + D+ D + 
Sbjct: 313 KLSQLQ-EGIEAIATTIIAHLTVVDLQ-FREKALYMAVMARRVIMAMHNPKMVDDRDYVG 370

Query: 318 NQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQ 377
           N+ + L G L+++  ++  + +    K  I   ++   +  +F  L +I        S  
Sbjct: 371 NKRLELAGQLMSLLFEDLFKKFNSDFKANIDKILKKPSRTSEFDALLSINI-----HSNN 425

Query: 378 IGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS 437
           I   +   + TG  + +      +RAG T    RL+++  +     +   + F   R  S
Sbjct: 426 ITMGLNRAISTGNWSLKRF--KMERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRKVS 481

Query: 438 -VRKLLPESWGFLCPVHTPDGEPCGLLNHMT 467
             R L P  +G LC   TP+GE CGL+ ++ 
Sbjct: 482 GPRALQPSQFGMLCTADTPEGEACGLVKNLA 512


>gi|297791275|ref|XP_002863522.1| hypothetical protein ARALYDRAFT_917015 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297309357|gb|EFH39781.1| hypothetical protein ARALYDRAFT_917015 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1165

 Score =  337 bits (864), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 202/517 (39%), Positives = 281/517 (54%), Gaps = 51/517 (9%)

Query: 627  ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQ 686
             TH EI P  +L VVA L PY  HNQSPRN YQC M KQ MG        R D  LY L 
Sbjct: 679  TTHIEIEPFTILGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLNRMDTLLYLLV 738

Query: 687  TPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQ 746
             PQ P++ T T    G D+   G NA VAV++ +GYD+EDA+++NKSS+DRG     + +
Sbjct: 739  YPQRPLLTTRTIELVGYDKLGAGQNATVAVMSNSGYDIEDAIVMNKSSLDRGFGRCIVMK 798

Query: 747  --TETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGE-------PY 797
                T    ++G  VDR     R   DA+ +  ++D DG+   G++I P +       P 
Sbjct: 799  KIVATCQKYENGT-VDRILMPQRTGPDAEKMQ-ILDDDGIASPGEIIRPNDVYIYKQIPV 856

Query: 798  CSIYDKTTNSWRTNSRKGSESVF---------VDYVAVDMKNSKNLPQKANIRFRHTRNP 848
            C+  DK T+    +  + +   F         VD VA+    S +L  K  IR  HTR P
Sbjct: 857  CTTRDKITSPLSDSQYRPAREFFKGPEGETQVVDRVALCSDKSGSLCIKYIIR--HTRRP 914

Query: 849  IIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
             +GDKFSSRHGQKGVC  +    D PFS + G+ PDLI+NPH FPSRMT+  ++E + +K
Sbjct: 915  ELGDKFSSRHGQKGVCGTIIQQEDFPFSEL-GICPDLIMNPHGFPSRMTVGKMIELLGSK 973

Query: 909  GGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYG 968
             G   G+F   + F    +  + D     SK+LVD+        GF+Y G ++LYSG+ G
Sbjct: 974  AGVSCGRFHYGSAFGE--RSGHADKVETISKTLVDK--------GFSYSGKDLLYSGLSG 1023

Query: 969  TELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSL 1028
              L   IF+GP+YYQ+L+HMV DK   R +G    +TRQP +G+ + GG+R GEMERD L
Sbjct: 1024 EPLEAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMMTRQPTEGKSKNGGLRVGEMERDCL 1083

Query: 1029 LAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVT 1088
            +A+GA+ L+++RL   SD     VC  CG  L   + +  K+A+                
Sbjct: 1084 IAYGASMLIYERLMISSDPFEVQVCRACG--LLGYYNYKLKKAV---------------- 1125

Query: 1089 CHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
            C  C+    + T+ +PY  + L  EL +MN+   L+L
Sbjct: 1126 CSTCKNGDNIATMKLPYACKLLFQELQSMNVVPRLKL 1162



 Score =  107 bits (268), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 117/520 (22%), Positives = 212/520 (40%), Gaps = 94/520 (18%)

Query: 8   DFEPLRELVRHHIESFDYMLDEGL------------------------------------ 31
           +F  +R LV+ H++SF+Y ++ G+                                    
Sbjct: 38  EFLKVRGLVKQHLDSFNYFINVGIKKIVHANCRIASVTDPSIYLRFKNVRVGEPSIMNIN 97

Query: 32  --SEMFDH-CRQAKISYTGKLMADVEFQYLDAGSPV--VRERFNFGQFPVMLKTRRCHLQ 86
              E+  H CR A ++Y   +  ++E+ +   G     V+  F  G+ P+ML++ RC L 
Sbjct: 98  ISEEINPHMCRLADMTYAAPIYVNIEYVHGSHGKKATSVKNDFIIGRMPIMLRSCRCVLH 157

Query: 87  GADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKA 146
           G D ++L  L E   + GGYF++ G E+V   +++ +Q   +S  R      ++G  + +
Sbjct: 158 GKDEEELARLGECPLDPGGYFVIKGTEKV---LLIQEQ---LSKNRIIIDSDKKGNINAS 211

Query: 147 VVIRC-VRKDQSSVTL---KLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIF 202
           V     + K ++ + +   K+Y  L+  V+           +P+ IVLKA+   +D EI 
Sbjct: 212 VTSSTEMTKSKTVIQMEKEKIYLFLHQFVK----------KIPIVIVLKAMGMESDQEIV 261

Query: 203 NHLTCCYDEKYKKEKGAVG-SPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDG 261
                            VG  P  S  +   + E     + T+ Q L ++    +    G
Sbjct: 262 Q---------------MVGRDPRFSASLLPSIEECVSEGVNTQKQALDYLEAKVKKTSYG 306

Query: 262 LQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIF----MLQKLFSLVDHTSVSDNPDSLQ 317
              E     A  ++RD    H+   ++ F    F    ML+++   + +    D+ D + 
Sbjct: 307 PPPEK-DGRALYILRDLFLAHVPVRDNNFRQKCFYVGVMLRRMIEAMLNKDSMDDKDYVG 365

Query: 318 NQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIE--NNGKKFDFFNLANIKKVMEKNPS 375
           N+ + L G L+++  ++  +  L +  K +   +   +   +FDF      + +   +  
Sbjct: 366 NKRLELSGQLMSLLFEDLFKTMLSEAIKKVDAILSKPSRASRFDFS-----QYLTTGDSQ 420

Query: 376 KQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
             I   +E  L TG    +       R G T    RL+F+  + F   +     F   R 
Sbjct: 421 NTISVGLERTLSTGNFDIKRF--RMHRKGMTQVLTRLSFIGSLGFITKI--SPQFEKSRK 476

Query: 436 TS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVAS 474
            S  R L P  WG LCP  TP+GE CGL+ ++     V +
Sbjct: 477 VSGPRSLQPSQWGMLCPCDTPEGESCGLVKNLALMTHVTT 516


>gi|115396768|ref|XP_001214023.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Aspergillus
            terreus NIH2624]
 gi|114193592|gb|EAU35292.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Aspergillus
            terreus NIH2624]
          Length = 1219

 Score =  337 bits (864), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 197/520 (37%), Positives = 273/520 (52%), Gaps = 65/520 (12%)

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH EI P  +L  VA L PY  HNQSPRN YQC M KQ +G        R D  LY +  
Sbjct: 737  THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVY 796

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
            PQ P+V++ T      D+ P G NAIVAV++Y+GYD+EDA++LNK SVDRG    Q+++ 
Sbjct: 797  PQKPMVKSRTIELTKYDQLPAGQNAIVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRK 856

Query: 748  ETIDLSDDGNKV-DRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTT- 805
               +L    N   D        N      H++++SDGL  VG+ ++ GE Y    +K+T 
Sbjct: 857  YVTNLKSYSNGTKDMLTPPSYENDAPIRKHALLESDGLAAVGEQVNAGEVYI---NKSTP 913

Query: 806  ---NSWRTN---------------SRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRN 847
               NS+                  + K  +  ++D V + +  ++N  Q   +  R TR 
Sbjct: 914  DQANSFGIGGPDPNRPINYMPTPMTYKLPDPAYIDQVLLSVTENEN--QLVKVLTRQTRR 971

Query: 848  PIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAA 907
            P +GDKFSSRHGQKGV   +    DMPF+   G+ PD+I+NPH FPSRMT+  +LE VA 
Sbjct: 972  PEVGDKFSSRHGQKGVVGIIADQADMPFTD-QGINPDIIMNPHGFPSRMTVGKMLELVAG 1030

Query: 908  KGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVY 967
            K G L G+    T F  S                V+E+ ++L   GF+Y G + L SG+ 
Sbjct: 1031 KAGVLSGQHGYGTCFGGSP---------------VEEMSQILIDKGFSYGGKDYLTSGIT 1075

Query: 968  GTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDS 1027
            G  L   +F GP+YYQ+L+HMV DK   R+ G    +TRQP +GR R GG+R GEMERD 
Sbjct: 1076 GEALPFYVFTGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDC 1135

Query: 1028 LLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKV 1087
            L+A+G + LL +RL   SD H  DVC  CG +    +                       
Sbjct: 1136 LIAYGTSQLLLERLMISSDRHEIDVCEKCGFMGYLNW----------------------- 1172

Query: 1088 TCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
             C  C++S+ +  + +PY  + L  EL +MN+   L+L D
Sbjct: 1173 -CQRCKSSRSVVKMVIPYAAKLLIQELMSMNVTARLKLED 1211



 Score = 97.4 bits (241), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 112/474 (23%), Positives = 199/474 (41%), Gaps = 80/474 (16%)

Query: 37  HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
            CR    +Y   +  D  F Y+     V +  +  G+ PVML++ +C L      ++  L
Sbjct: 178 ECRLRDTTYAAPIQVD--FDYVRGRQRVRKRGYAIGRMPVMLRSSKCVLANKSPAEMTVL 235

Query: 97  KEEAAEMGGYFILNGLERVF--------RSVIL---PKQNYPMSMVRSSFRDRREGYTDK 145
            E   + GGYFI+NG E+V           +I+   PK+    + V SS  +R+     K
Sbjct: 236 NECPLDPGGYFIVNGTEKVILVQEQLSKNRIIVETDPKKEIVQASVTSSSNERKS----K 291

Query: 146 AVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHL 205
           + ++  ++KD+  V    + +LN  +             P+ I+LKA+    D E+   L
Sbjct: 292 SYIV--LKKDKLYVK---HNVLNEDI-------------PIVILLKAMGINTDKEML-LL 332

Query: 206 TCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQS- 264
               D+ Y+            E   I   E  +L + T+ Q L  IG   +  I+  Q+ 
Sbjct: 333 VAGVDKVYQ------------EDFAINFEEAINLGIYTQQQALDWIGARIK--INRKQAS 378

Query: 265 --ESYYAVAETVIRDYIFVHLNDNNDKFN----LLIFMLQKLFSLVDHTSVSDNPDSLQN 318
              ++   A   I   I  H+   N  F      +  M +++    +  ++ D+ D L N
Sbjct: 379 YRRTHVQEAIEAIASVIISHIEVKNMNFRPKAIYVAHMARRVLMAKNDPTLVDDRDYLGN 438

Query: 319 QEILLPGHLITIYLKEKLEDWLRK---GKKLIQDEIENNGKKFDFFNLANIKKVMEKNPS 375
           + + L G L+ +      ED  +K     K+  D++ N   + + F+  ++  +   + +
Sbjct: 439 KRLELAGQLLALL----FEDLFKKFCFDIKMNVDKVLNKRNRAEAFDAWSVMSMHTNHIT 494

Query: 376 KQIGTSIET---MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAG 432
           + +  +I T    LK  R+         +RAG T    RL+++  +     +   + F  
Sbjct: 495 QGMNRAISTGNWSLKRFRM---------ERAGVTHVLSRLSYIAALGMMTRI--SSQFEK 543

Query: 433 LRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDF 485
            R  S  R L P  +G LCP  TP+GE CGL+ ++     + +  D  G IR+ 
Sbjct: 544 TRKVSGPRALQPSQFGMLCPADTPEGEACGLVKNLALMTHITT-NDEEGPIRNL 596


>gi|119497281|ref|XP_001265400.1| DNA-directed rna polymerase III subunit [Neosartorya fischeri NRRL
            181]
 gi|119413562|gb|EAW23503.1| DNA-directed rna polymerase III subunit [Neosartorya fischeri NRRL
            181]
          Length = 1200

 Score =  337 bits (863), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 198/520 (38%), Positives = 273/520 (52%), Gaps = 66/520 (12%)

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH EI P  +L  VA L PY  HNQSPRN YQC M KQ +G        R D  LY +  
Sbjct: 719  THLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVY 778

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
            PQ P+V++ T      D+ P G NA+VAV++Y+GYD+EDA++LNK SVDRG    Q+++ 
Sbjct: 779  PQKPMVKSRTIELVKYDQLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRK 838

Query: 748  ETIDLSDDGNKV-DRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN 806
               +L    N   DR       N      H+++++DGL  VG+ ++ GE Y    +K+T 
Sbjct: 839  YVTNLKSYSNGTKDRLNPPTYENGAPIRKHALLEADGLAAVGEQVNAGEVYI---NKSTP 895

Query: 807  SWRTNSRKGSES------------------VFVDYVAVDMKNSKNLPQKANIRFRHTRNP 848
                 S  GS++                   ++D V   ++ ++N  Q   +  R TR P
Sbjct: 896  EQSNLSGIGSDAGRPVQYTPTPMTYKLHDPAYIDKVMYSVQENEN--QLVKVLVRQTRRP 953

Query: 849  IIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
             +GDKFSSRHGQKGV   +    DMPF+   G+ PD+I+NPH FPSRMT+  +LE VA K
Sbjct: 954  EVGDKFSSRHGQKGVVGIIADQADMPFTD-AGINPDIIMNPHGFPSRMTVGKMLELVAGK 1012

Query: 909  GGSLHGKFMDATPFANSVKKTNGDTGTDE-SKSLVDELGEMLRTCGFNYHGVEVLYSGVY 967
             G L G     T F        G T  +E S+ L+D         GF+Y G + L SG+ 
Sbjct: 1013 AGVLAGHHGYGTCF--------GGTPVEEASRILIDH--------GFSYGGKDYLTSGIT 1056

Query: 968  GTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDS 1027
            G  L   +F GP+YYQ+L+HMV DK   R+ G    +TRQP +GR R GG+R GEMERD 
Sbjct: 1057 GEALPFYVFTGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDC 1116

Query: 1028 LLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKV 1087
            L+A+G + LL +RL   SD H  DVC  CG +    +                       
Sbjct: 1117 LIAYGTSQLLLERLMISSDRHEIDVCEQCGFMGYLNW----------------------- 1153

Query: 1088 TCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
             C  C++S+ +  + +PY  + L  EL +MN+   L+L D
Sbjct: 1154 -CQRCKSSRSVVKMTIPYAAKLLIQELMSMNVTARLKLDD 1192



 Score = 93.6 bits (231), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 116/491 (23%), Positives = 208/491 (42%), Gaps = 75/491 (15%)

Query: 21  ESFDYMLDEGLSEMFDH-CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLK 79
           E  D   D   S++  H CR    +Y   ++  V F+Y+     V R+  + G+ P+ML+
Sbjct: 143 EPQDVTPDATPSDVSPHECRLRDTTYAAPIL--VNFEYIRGRQRVTRKGVSIGRMPIMLR 200

Query: 80  TRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVF--------RSVIL---PKQNYPM 128
           + +C L      ++  L E   + GGYFI+NG E+V           +I+   PK+    
Sbjct: 201 SSKCVLANKTPSEMTVLNECPLDPGGYFIVNGTEKVILVQEQLSKNRIIVETDPKKEIVQ 260

Query: 129 SMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGI 188
           + V SS  +R+     K+ +I  ++KD      KLY   N        +  ++  +P+ I
Sbjct: 261 ASVTSSSNERKS----KSYII--LKKD------KLYVKHN--------VLSED--IPIVI 298

Query: 189 VLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCL 248
           +L+A+    + E+   L    D  Y+ +              I   E   L + T+ Q L
Sbjct: 299 LLRAMGIHTEQEML-LLVAGVDSLYQDD------------FAINFEESIKLGIYTQQQAL 345

Query: 249 QHIGEHFQPVIDGLQS---ESYYAVAETVIRDYIFVHLNDNNDKFN----LLIFMLQKLF 301
             IG   +  I+  QS    ++   A   I   I  H+   N  F      +  M +++ 
Sbjct: 346 DWIGARIK--INRKQSSYRRTHIQEAVEAIASVIISHIEVKNMNFRPKAVYVAHMARRVL 403

Query: 302 SLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFF 361
              +  S+ D+ D L N+ + L G L+ +  ++  + +    K  I D++ N   + + F
Sbjct: 404 MAKNDPSLVDDRDYLGNKRLELAGQLLALLFEDLFKKFCFDIKMNI-DKVLNKRNRAEQF 462

Query: 362 NLANIKKVMEKNPSKQIGTSIET---MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFI 418
           +   +  +   + ++ +  +I T    LK  R+         +RAG T    RL+++  +
Sbjct: 463 DAWTVMSMHSNHITQGMNRAISTGNWSLKRFRM---------ERAGVTHVLSRLSYIAAL 513

Query: 419 SFFRAVHRGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYD 477
                +   + F   R  S  R L P  +G LCP  TP+GE CGL+ ++     + +  D
Sbjct: 514 GMMTRI--SSQFEKTRKVSGPRALQPSQFGMLCPADTPEGEACGLVKNLALMTHITT-ND 570

Query: 478 SRGNIRDFSKM 488
             G I++   M
Sbjct: 571 EEGPIKNLVFM 581


>gi|67516079|ref|XP_657925.1| hypothetical protein AN0321.2 [Aspergillus nidulans FGSC A4]
 gi|40746571|gb|EAA65727.1| hypothetical protein AN0321.2 [Aspergillus nidulans FGSC A4]
          Length = 1656

 Score =  336 bits (862), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 193/518 (37%), Positives = 273/518 (52%), Gaps = 61/518 (11%)

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH EI P  +L  VA L PY  HNQSPRN YQC M KQ +G        R D  LY +  
Sbjct: 1174 THMEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVY 1233

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
            PQ P+V++ T      D+ P G NA VAV++Y+GYD+EDA++LNK SVDRG    Q+++ 
Sbjct: 1234 PQKPMVKSRTIELTKYDQLPAGQNATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRK 1293

Query: 748  ETIDLSD--DGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYC--SIYDK 803
               ++    +G K       +  +   +  H++++SDGL  VG+ ++ GE Y   S  D+
Sbjct: 1294 YVTNMKSYSNGTKDILSPPTYENDAPIRK-HALLESDGLAAVGEQVNAGEVYINKSTPDQ 1352

Query: 804  TTNSWRTNSRKGS--------------ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPI 849
            + +S    S  G               +  ++D V +    ++N  Q   +  R TR P 
Sbjct: 1353 SMSSGMPGSDAGRPISYNPTPMTYKLPDPAYIDKVMISATENEN--QIIKVLTRQTRRPE 1410

Query: 850  IGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKG 909
            +GDKFSSRHGQKGV   +    DMPF+   G+ PD+I+NPH FPSRMT+  +LE VA K 
Sbjct: 1411 VGDKFSSRHGQKGVTGIIVDQADMPFTD-QGINPDIIMNPHGFPSRMTVGKMLELVAGKA 1469

Query: 910  GSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGT 969
            G L G+    T F               S + V+++ + L   GF+Y G + L SG+ G 
Sbjct: 1470 GVLSGQHGYGTCF---------------SGTPVEQMTQTLIDKGFSYGGKDYLTSGITGE 1514

Query: 970  ELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLL 1029
             L   +F GP+YYQ+L+HMV DK   R+ G    +TRQP +GR R GG+R GEMERD L+
Sbjct: 1515 ALPFYVFTGPIYYQKLKHMVQDKMHSRARGPRATLTRQPTEGRSRDGGLRLGEMERDCLI 1574

Query: 1030 AHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTC 1089
            A+G + LL +RL   SD H  DVC  CG +    +                        C
Sbjct: 1575 AYGTSQLLLERLMISSDRHEVDVCEQCGFMGYLNW------------------------C 1610

Query: 1090 HACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
              C++S+ +  + +PY  + L  EL +MN+   L+L D
Sbjct: 1611 QRCKSSRSVVKMVIPYAAKLLIQELMSMNVTARLKLED 1648



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 105/461 (22%), Positives = 192/461 (41%), Gaps = 54/461 (11%)

Query: 37   HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
             CR    +Y   +  D  F+Y+     V R+  + G+ PVML++ +C L      ++  L
Sbjct: 615  ECRLRDTTYAAPIQVD--FEYIRGRQRVRRKGVSIGRMPVMLRSSKCVLGNKTPAQMTVL 672

Query: 97   KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
             E   + GGYFI+NG E+    VIL ++    + +      ++E            RK +
Sbjct: 673  NECPLDPGGYFIVNGTEK----VILVQEQLSKNRIIVETDPKKEIVQASVTSSSNERKSK 728

Query: 157  SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
            S + LK         RL          +P+ I+LKA+    D E+   L    D+ Y+  
Sbjct: 729  SYIILK-------KDRLYVKHNVLSEDIPIVILLKAMGIHTDKEMM-LLVAGVDKVYQ-- 778

Query: 217  KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQ--------SESYY 268
                      E   I   E   + + T+ Q L  IG   +  I+  Q         E+  
Sbjct: 779  ----------EDFAINFEEAIKVGVFTQQQALDWIGSRIK--INRKQMSYRRTHVQEAVE 826

Query: 269  AVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
            A+A  +I  +I V   +   K   +  M +++    +  ++ D+ D L N+ + L G L+
Sbjct: 827  AIASVII-SHIEVKDMNFRPKAIYVANMARRVLMAKNDAALVDDRDYLGNKRLELAGQLL 885

Query: 329  TIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIET---M 385
             +  ++  + +    K  I D++ N   + + F+  ++  +   + ++ +  +I T    
Sbjct: 886  ALLFEDLFKKFCFDIKMNI-DKVLNKRNRVEAFDAWSVIGMHSNHITQGMNRAISTGNWS 944

Query: 386  LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPE 444
            LK  R+         +RAG T    RL+++  +     +   + F   R  S  R L P 
Sbjct: 945  LKRFRM---------ERAGVTHVLSRLSYIAALGMMTRI--SSQFEKTRKVSGPRALQPS 993

Query: 445  SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDF 485
             +G +C   TP+GE CGL+ ++     + +  D  G I++ 
Sbjct: 994  QFGMICLADTPEGEACGLVKNLALMTHITT-NDEEGPIKNL 1033


>gi|259489446|tpe|CBF89725.1| TPA: DNA-directed RNA polymerase III, beta subunit, putative
            (AFU_orthologue; AFUA_1G02460) [Aspergillus nidulans FGSC
            A4]
          Length = 1225

 Score =  336 bits (862), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 193/518 (37%), Positives = 273/518 (52%), Gaps = 61/518 (11%)

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH EI P  +L  VA L PY  HNQSPRN YQC M KQ +G        R D  LY +  
Sbjct: 743  THMEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVY 802

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
            PQ P+V++ T      D+ P G NA VAV++Y+GYD+EDA++LNK SVDRG    Q+++ 
Sbjct: 803  PQKPMVKSRTIELTKYDQLPAGQNATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRK 862

Query: 748  ETIDLSD--DGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYC--SIYDK 803
               ++    +G K       +  +   +  H++++SDGL  VG+ ++ GE Y   S  D+
Sbjct: 863  YVTNMKSYSNGTKDILSPPTYENDAPIRK-HALLESDGLAAVGEQVNAGEVYINKSTPDQ 921

Query: 804  TTNSWRTNSRKGS--------------ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPI 849
            + +S    S  G               +  ++D V +    ++N  Q   +  R TR P 
Sbjct: 922  SMSSGMPGSDAGRPISYNPTPMTYKLPDPAYIDKVMISATENEN--QIIKVLTRQTRRPE 979

Query: 850  IGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKG 909
            +GDKFSSRHGQKGV   +    DMPF+   G+ PD+I+NPH FPSRMT+  +LE VA K 
Sbjct: 980  VGDKFSSRHGQKGVTGIIVDQADMPFTD-QGINPDIIMNPHGFPSRMTVGKMLELVAGKA 1038

Query: 910  GSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGT 969
            G L G+    T F               S + V+++ + L   GF+Y G + L SG+ G 
Sbjct: 1039 GVLSGQHGYGTCF---------------SGTPVEQMTQTLIDKGFSYGGKDYLTSGITGE 1083

Query: 970  ELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLL 1029
             L   +F GP+YYQ+L+HMV DK   R+ G    +TRQP +GR R GG+R GEMERD L+
Sbjct: 1084 ALPFYVFTGPIYYQKLKHMVQDKMHSRARGPRATLTRQPTEGRSRDGGLRLGEMERDCLI 1143

Query: 1030 AHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTC 1089
            A+G + LL +RL   SD H  DVC  CG +    +                        C
Sbjct: 1144 AYGTSQLLLERLMISSDRHEVDVCEQCGFMGYLNW------------------------C 1179

Query: 1090 HACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
              C++S+ +  + +PY  + L  EL +MN+   L+L D
Sbjct: 1180 QRCKSSRSVVKMVIPYAAKLLIQELMSMNVTARLKLED 1217



 Score = 86.3 bits (212), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 107/464 (23%), Positives = 192/464 (41%), Gaps = 60/464 (12%)

Query: 37  HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
            CR    +Y   +  D  F+Y+     V R+  + G+ PVML++ +C L      ++  L
Sbjct: 184 ECRLRDTTYAAPIQVD--FEYIRGRQRVRRKGVSIGRMPVMLRSSKCVLGNKTPAQMTVL 241

Query: 97  KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
            E   + GGYFI+NG E+    VIL ++    + +      ++E            RK +
Sbjct: 242 NECPLDPGGYFIVNGTEK----VILVQEQLSKNRIIVETDPKKEIVQASVTSSSNERKSK 297

Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
           S + LK         RL          +P+ I+LKA+    D E+   L    D+ Y+  
Sbjct: 298 SYIILK-------KDRLYVKHNVLSEDIPIVILLKAMGIHTDKEMM-LLVAGVDKVYQ-- 347

Query: 217 KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQ--------SESYY 268
                     E   I   E   + + T+ Q L  IG   +  I+  Q         E+  
Sbjct: 348 ----------EDFAINFEEAIKVGVFTQQQALDWIGSRIK--INRKQMSYRRTHVQEAVE 395

Query: 269 AVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
           A+A  +I  +I V   +   K   +  M +++    +  ++ D+ D L N+ + L G L+
Sbjct: 396 AIASVII-SHIEVKDMNFRPKAIYVANMARRVLMAKNDAALVDDRDYLGNKRLELAGQLL 454

Query: 329 TIYLKEKLEDWLRK---GKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIET- 384
            +      ED  +K     K+  D++ N   + + F+  ++  +   + ++ +  +I T 
Sbjct: 455 ALL----FEDLFKKFCFDIKMNIDKVLNKRNRVEAFDAWSVIGMHSNHITQGMNRAISTG 510

Query: 385 --MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKL 441
              LK  R+         +RAG T    RL+++  +     +   + F   R  S  R L
Sbjct: 511 NWSLKRFRM---------ERAGVTHVLSRLSYIAALGMMTRI--SSQFEKTRKVSGPRAL 559

Query: 442 LPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDF 485
            P  +G +C   TP+GE CGL+ ++     + +  D  G I++ 
Sbjct: 560 QPSQFGMICLADTPEGEACGLVKNLALMTHITT-NDEEGPIKNL 602


>gi|425771289|gb|EKV09736.1| DNA-directed RNA polymerase [Penicillium digitatum Pd1]
 gi|425776820|gb|EKV15021.1| DNA-directed RNA polymerase [Penicillium digitatum PHI26]
          Length = 1208

 Score =  336 bits (862), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 196/517 (37%), Positives = 270/517 (52%), Gaps = 60/517 (11%)

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH EI P  +L  VA L PY  HNQSPRN YQC M KQ +G        R D  LY +  
Sbjct: 727  THLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFQRIDSILYLMVY 786

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
            PQ P+V++ T      D+ P G NA VAV++Y+GYD+EDA++LNK SVDRG    Q+++ 
Sbjct: 787  PQKPMVKSRTIELTKYDQLPAGQNATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRK 846

Query: 748  ETIDLSD--DGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCS-IYDKT 804
                L    +G K       F      +  H++++SDGL  VG+M++ GE Y + +  + 
Sbjct: 847  YVTTLKSYPNGAKDSLKGPTFENGVPIRK-HALLESDGLAAVGEMVNNGESYINKVTPRV 905

Query: 805  TNSWR--------------TNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPII 850
             NS                + + K  +  ++D V V     +   Q   +  R TR P +
Sbjct: 906  QNSMGFTGSGMGGGDVIEASMNYKLPDPSYIDKVLVSATEGET--QLIKVLTRQTRRPEV 963

Query: 851  GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGG 910
            GDKFSSRHGQKGV   +    DMPFS   G+ PD+I+NPH FPSRMT+  +LE VA K G
Sbjct: 964  GDKFSSRHGQKGVVGIIADQADMPFSD-QGINPDIIMNPHGFPSRMTVGKMLELVAGKAG 1022

Query: 911  SLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTE 970
             L G+    T F  S                V+E+ ++L   GF+Y G + L SG+ G  
Sbjct: 1023 VLSGQHGYGTCFGGSP---------------VEEMSQILIDKGFSYGGKDYLTSGITGEA 1067

Query: 971  LTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLA 1030
            L   +F GP+YYQ+L+HMV DK   R+ G    +TRQP +GR R GG+R GEMERD L+A
Sbjct: 1068 LPFYVFTGPIYYQKLKHMVQDKMHSRAKGPTATLTRQPTEGRSRNGGLRLGEMERDCLIA 1127

Query: 1031 HGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCH 1090
            +G + LL +RL   SD H  DVC  CG +    +                        C 
Sbjct: 1128 YGTSQLLLERLMISSDRHEVDVCEQCGFMGYLNW------------------------CP 1163

Query: 1091 ACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
             C++S+ +  + +PY  + L  EL +MN+   L+L D
Sbjct: 1164 GCKSSRSVVKMVIPYAAKLLIQELMSMNVTARLKLDD 1200



 Score = 90.9 bits (224), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 104/464 (22%), Positives = 193/464 (41%), Gaps = 60/464 (12%)

Query: 37  HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
            CR    +Y   ++ D  F+Y+     V+R     G+ P+ML++ +C L      ++  L
Sbjct: 168 ECRLRDTTYAAPILVD--FEYVRGRQRVIRRAVPIGRIPIMLRSSKCVLSNKTPAQMSVL 225

Query: 97  KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
            E   + GGYF++NG E+    VIL ++    + +      ++E            RK +
Sbjct: 226 NECPLDPGGYFVVNGTEK----VILVQEQLSKNRIIVETDPKKEIVQASVTSSSNERKSK 281

Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
           S       Y+++   RL          +P+ I+LKA+    D E+   +T          
Sbjct: 282 S-------YIVSKKGRLYVKHNVLNEDIPIVILLKAMGIHTDKEMMQMVTG--------- 325

Query: 217 KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQS--------ESYY 268
                  L  +   I   E  ++ + T+ Q L+ IG   +  I+  Q+        E+  
Sbjct: 326 ----DDSLYQDDFAINFEEAINVDVYTQQQALEWIGCRIK--INRKQAAYRKTHVQEAVE 379

Query: 269 AVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
           A+A  +I  +I V   +   K   +  M +++       ++ D+ D L N+ + L G ++
Sbjct: 380 AIASVII-SHIEVKDMNFRPKAIYVAHMARRVLMAKSDPALVDDRDYLGNKRLELAGQML 438

Query: 329 TIYLKEKLEDWLRK---GKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIET- 384
            +      ED  +K     K+  D++ N   + + F+   I  +   + ++ +  +I T 
Sbjct: 439 ALL----FEDLFKKFCFDIKMNIDKVLNKRNRAEQFDAWTIVTMHGNHITQGMNRAISTG 494

Query: 385 --MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKL 441
              LK  R+         +RAG T    RL+++  +     +   + F   R  S  R L
Sbjct: 495 NWSLKRFRM---------ERAGVTHVLSRLSYIAALGMMTRI--SSQFEKTRKVSGPRAL 543

Query: 442 LPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDF 485
            P  +G LCP  TP+GE CGL+ ++     + +  D  G +R+ 
Sbjct: 544 QPSQFGMLCPADTPEGEACGLVKNLALMTHITT-NDEEGPVRNL 586


>gi|294660111|ref|XP_002777730.1| DEHA2G23232p [Debaryomyces hansenii CBS767]
 gi|199434470|emb|CAR66041.1| DEHA2G23232p [Debaryomyces hansenii CBS767]
          Length = 1165

 Score =  335 bits (860), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 198/523 (37%), Positives = 276/523 (52%), Gaps = 65/523 (12%)

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH EI P  +L  VA L PY  HNQSPRN YQC M KQ +G        R D  LY +  
Sbjct: 683  THMEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGVIGYNQFRRIDTLLYLMVY 742

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
            PQ P+V+T T      D+ P G NA+VAV++Y+GYD+EDA++LNKSS+DRG    Q+ + 
Sbjct: 743  PQQPMVKTKTIELIDYDKLPAGQNAVVAVMSYSGYDIEDALVLNKSSIDRGFGRCQVLRK 802

Query: 748  ETIDLSDDGNKVDRGQKLFRRNKDAKSL--HSVIDSDGLPYVGQMIHPGEPYCS------ 799
             TI L    N         R +++ + +  H+ +  DGL  VG  +  G+ Y +      
Sbjct: 803  NTITLKRYPNHTKDLVSGMRVDENGEPIFPHAALGPDGLGEVGMKVENGQVYVNKCVPNN 862

Query: 800  -------IYDKTTNSWRTNSR--------KGSESVFVDYVAVDMKNSKNLPQKANIRFRH 844
                     D+  N  +T           K  E  +VD V   M  S N      +  R 
Sbjct: 863  AGESVLGSNDQQHNQQQTAESHREVPAFYKAPEPAYVDQVM--MSVSDNDQALIKVLLRQ 920

Query: 845  TRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLES 904
            TR P +GDKFSSRHGQKGVC  +    D+PF+   G+ PD+I+NPH FPSRMT+  ++E 
Sbjct: 921  TRRPELGDKFSSRHGQKGVCGIIVQQEDLPFND-DGISPDIIMNPHGFPSRMTVGKMIEL 979

Query: 905  VAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYS 964
            ++ K G L+G     T F        G    + S++LVD+        GF+Y G ++LYS
Sbjct: 980  ISGKAGVLNGSLEYGTCFG-------GSKLEEMSRTLVDK--------GFSYSGKDMLYS 1024

Query: 965  GVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEME 1024
            G+ G  L   IF GP+YYQ+L+HMV DK   R+ G    +TRQP +GR R GG+R GEME
Sbjct: 1025 GITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEME 1084

Query: 1025 RDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP 1084
            RD ++A+GA+ LL +RL   SD    D+C+ CG +   ++                    
Sbjct: 1085 RDCVIAYGASQLLLERLMLSSDAFEVDICNQCGLMGYNSW-------------------- 1124

Query: 1085 KKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
                C +C++S+ +  + +PY  + L  EL +MNI   L+LGD
Sbjct: 1125 ----CTSCKSSEYIIKMTIPYAAKLLFQELLSMNIAPRLKLGD 1163



 Score =  104 bits (260), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 114/525 (21%), Positives = 213/525 (40%), Gaps = 107/525 (20%)

Query: 9   FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
           F  ++ LV+ H++SF+Y +D  L ++                                  
Sbjct: 51  FLKVKGLVKQHLDSFNYFVDVDLKKIIKANELVLSDVDPEFYLKYLDIRIGHKSTSPPGT 110

Query: 37  --------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGA 88
                    CR   ++Y+  +  DVE  Y      ++ +    G+ P+ML++ +C L G 
Sbjct: 111 KEVILPPHECRLRDLTYSAPIYVDVE--YTRGRKIIMHKDLEIGRMPIMLRSNKCILDGI 168

Query: 89  DSQKLVSLKEEAAEMGGYFILNGLERVF-------RSVILPKQNYPMSMVRSSFRDRREG 141
           D Q++    E   + GGYFI+NG E+V        ++ I+ + +   ++V++S       
Sbjct: 169 DEQQMARFDECPLDPGGYFIVNGTEKVILVQEQLSKNRIIVEADEKKNIVQASVTSSTHE 228

Query: 142 YTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEI 201
              K  VI   + D         YL + S+            +P+ I+LKA   T+DLEI
Sbjct: 229 RKSKTYVI--TKNDN-------IYLKHNSISED---------IPIVIILKAAGITSDLEI 270

Query: 202 FNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ----- 256
              L C  D +Y+            +   +   E   L + T+ Q L ++G+  +     
Sbjct: 271 L-QLVCGQDPQYQ------------DLFVVNFEEAAKLEIFTQQQALNYVGKRVKTIRRA 317

Query: 257 --PVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFN----LLIFMLQKLFSLVDHTSVS 310
             P +  +Q E   A+A T+I      HL  ++ +F      +  M +++   + +  + 
Sbjct: 318 GAPKLSQMQ-EGIEAIATTII-----AHLTVSDLQFREKALYIAAMARRVLMTMHNPKMV 371

Query: 311 DNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVM 370
           D+ D + N+ + L G L+++  ++  + +    K  I   ++   +  +F  L +I    
Sbjct: 372 DDRDYVGNKRLELAGQLMSLLFEDLFKKFNSDFKANIDKILKKPSRASEFDALLSINI-- 429

Query: 371 EKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASF 430
               S  I   +   + TG  + +      +RAG T    RL+++  +     +   + F
Sbjct: 430 ---HSNNITMGLNRAISTGNWSLKRF--KMERAGVTHVLSRLSYISALGMMTRI--SSQF 482

Query: 431 AGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVAS 474
              R  S  R L P  +G LC   TP+GE CGL+ ++     + S
Sbjct: 483 EKSRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITS 527


>gi|145525932|ref|XP_001448777.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124416343|emb|CAK81380.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1203

 Score =  335 bits (860), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 310/1174 (26%), Positives = 521/1174 (44%), Gaps = 155/1174 (13%)

Query: 19   HIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRER-------FNF 71
            HI+ F+    E +  M    R    S   K+  +V  Q  +     + E+         F
Sbjct: 109  HIDKFE----EEIFPMIARLRDLTYSRQLKIDLEVTMQQRNKRDGSIEEKSKQTFKGLPF 164

Query: 72   GQFPVMLKTRRCHL-----QGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNY 126
             + P+M+++R C L          Q+ +   E   + GGYFIL G E+V     +  Q  
Sbjct: 165  FKLPIMVRSRFCSLPKDPKDPEQIQQRIQSGECGFDQGGYFILRGSEKV-----IVAQER 219

Query: 127  PMSMVRSSFRDRREGYTDKAVV--IRC---VRKDQSSVTLKLYYLLNGSV-RLGFWLQGK 180
              + V   F+ +     +K  V  IR    +  + ++  ++L Y+ N  V R        
Sbjct: 220  IANNVVLVFKSK---IVNKPWVAEIRSQPDLWSNPNNFKVELRYIQNTPVIRCSVKQFNS 276

Query: 181  EYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIIL--AEVQD 238
               +P+  + +AL  ++D EI   +       Y  E   +G P++      +    E +D
Sbjct: 277  TQGIPLFTLFRALGISSDQEILERIV------YNLEDEQMG-PMLEMLYGSLQEGGEYED 329

Query: 239  LSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHL---NDNNDKFNLLI- 294
              L     CL+ IG   +   +    E+    A+ +I   I  H+   +++ D+    I 
Sbjct: 330  EEL-----CLRWIGNKIKKA-ENQDPETLIQEAKKLINKNILPHIGVSSESRDRKAYFIG 383

Query: 295  FMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENN 354
            +++ +L +     +  D+ D    + + + G ++    K   E + +  KK ++  I  N
Sbjct: 384  YIVHRLLNASLGKTDQDDRDHYGKKRLDMAGAMMMGVFKTSFESFKQNAKKALEKYI--N 441

Query: 355  GKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLA-TQTGLDLQQRAGYTVQAERLN 413
            G+     N+     +      +QI   I+  L TG    ++ G  ++     T++ E  +
Sbjct: 442  GE-----NMRQPDDIKSFFDGEQISKDIDNALATGNWGRSKEGQVVKTGVAQTLKRE-TS 495

Query: 414  FLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGL---LNHMTSTC 470
                +S  R ++   +   ++ +  R+L    +GF+CP  TP+G+  G+   L+ MT+  
Sbjct: 496  LFATLSHLRRMNAPIN-PQMKLSKPRQLHNTHFGFICPAETPEGQKIGIVKNLSLMTAVS 554

Query: 471  RVASYYDSRGNIRDFSKMRTSIL--RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV 528
                  D    ++    ++  +   ++L G      +PK+ K        VL+DG  +G 
Sbjct: 555  NDLQQKDKETLLKLIMVLKQDVFDFQLLQGDFQAQDIPKMTK--------VLVDGNWIGF 606

Query: 529  IPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP---V 585
              +   E+ +   + L+ +  S IP ++ + +  ++       + ++T   + +RP   V
Sbjct: 607  --TRNPEQFIQEFKNLRSAEESFIPIEVSINFDYVN-----KEIRIYTDAGRCMRPLFIV 659

Query: 586  RNISLPSEESQNIELIGPFEQVFMEIRCPDGGDG-----------------GRRNAFPAT 628
            ++  L  +++Q +     +EQ+ ++ +C +  D                  G +N    T
Sbjct: 660  QDNKLKLKKNQ-LNSFTDWEQL-LQNKCVELLDVEEEEGSLIAMDLNIMTRGTQNFKRYT 717

Query: 629  HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTP 688
            H EIHP  M  V A++ P+++HNQ PRN  Q  M KQ MG +      R D  ++ L  P
Sbjct: 718  HCEIHPCMMFGVCASVIPFANHNQGPRNTLQSAMGKQAMGLNSTNFNIRFDTLVHILHYP 777

Query: 689  QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT- 747
            Q P+  +       ++E P G N + ++  +TGY+ ED++I+N+ ++DRG      Y+T 
Sbjct: 778  QKPLASSKAVDFITVNEVPIGINCVTSIACFTGYNQEDSIIINQYAIDRGFFRSVFYRTY 837

Query: 748  -ETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCS---IYDK 803
             E+ D   D     +  K    N   K L   +DSDG+   G  +   EP      I D 
Sbjct: 838  KESEDKDPDNFTETKITKPLGDNYAGK-LFIKLDSDGIVPPGTKVDEEEPIIGKELIIDN 896

Query: 804  ---TTNSWRTNSRKGS------ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKF 854
                T + + N+++ S      E   VD V +  +N K   +   ++ R  R P IGDKF
Sbjct: 897  IMLNTANGQKNTKECSLLTRRAERGVVDSVLIS-ENQKGY-KLVKVKVRSLRIPQIGDKF 954

Query: 855  SSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHG 914
             SRHGQKG C   +   D+PF+ + G+ PDL INPH  PSRMTI  L+E +++K  S+ G
Sbjct: 955  CSRHGQKGTCGMTYRQEDLPFT-LVGISPDLTINPHCIPSRMTIGHLIECLSSKLASIKG 1013

Query: 915  KFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCE 974
            +F DATPFA               +  V+++   L   G+   G EV+ +   G      
Sbjct: 1014 QFNDATPFA---------------QISVNDIANKLHEVGWQKWGNEVMTNPYSGNMFQIP 1058

Query: 975  IFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAA 1034
            IF+GP YYQRLRH+V DK   RS G +  ITRQP  GR R GG+RFGEMERD +++HG A
Sbjct: 1059 IFVGPTYYQRLRHLVDDKMYARSRGPVTGITRQPTHGRSRKGGLRFGEMERDCIISHGTA 1118

Query: 1035 YLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQT 1094
              L +R +  SD     VCS CG    A   +                  ++  C+ C+ 
Sbjct: 1119 KFLKERTYDVSDAFRVHVCSKCGLFAVANLEN------------------QEFYCNICKN 1160

Query: 1095 SKGME---TVAMPYVFRYLAAELAAMNIKITLQL 1125
            +        V MPY  + L  EL +MNI   L+ 
Sbjct: 1161 TNQQNQIYQVLMPYAAKTLIQELISMNIAPRLKF 1194


>gi|154277042|ref|XP_001539366.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Ajellomyces
            capsulatus NAm1]
 gi|150414439|gb|EDN09804.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Ajellomyces
            capsulatus NAm1]
          Length = 1186

 Score =  335 bits (859), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 192/501 (38%), Positives = 269/501 (53%), Gaps = 59/501 (11%)

Query: 644  LTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGI 703
            L PY  HNQSPRN YQC M KQ +G        R D  LY +  PQ P+V+T T      
Sbjct: 720  LIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYTMVYPQKPMVKTRTIELIKY 779

Query: 704  DEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DRG 762
            D+ P G +A VAV++Y+GYD+EDA++LNK SVDRG    Q+++  + +L    N   D+ 
Sbjct: 780  DKLPAGQSATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYSTNLKSYSNGTKDKL 839

Query: 763  QKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIY--DKTTNSWRTNSRKGS---- 816
            +   R N      H+++D+DGL  VG+ ++ GE Y +    +   +S  T S  G     
Sbjct: 840  KGPDRENGVPIRKHALLDNDGLAAVGEKVNHGEVYINKVTPENALSSGITGSDAGRPIAY 899

Query: 817  ----------ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQ 866
                      +  ++D V +    ++N  Q   ++ R TR P +GDKFSSRHGQKGV   
Sbjct: 900  IPSPQTYKLPDPSYIDKVMISATEAEN--QLIKVQTRQTRVPEVGDKFSSRHGQKGVVGI 957

Query: 867  LWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSV 926
            +    DMPFS + G+ PD+I+NPH FPSRMT+  +LE +A K G L G+F   T F  S 
Sbjct: 958  IAEHADMPFSDL-GIVPDIIMNPHGFPSRMTVGKMLELIAGKAGILSGQFGYGTAFGGSP 1016

Query: 927  KKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLR 986
                           V+E+  +L   GF+Y G + L SG+ G  L   +F+GP+YYQ+L+
Sbjct: 1017 ---------------VEEMSAILVDHGFSYGGKDYLTSGITGEPLPAYVFMGPIYYQKLK 1061

Query: 987  HMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSD 1046
            HMV DK   R+ G    +TRQP +GR R GG+R GEMERD L+A+G + LL +RL   SD
Sbjct: 1062 HMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLLLERLMISSD 1121

Query: 1047 YHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYV 1106
             H  DVC  CG +    +                        C  C+TS+G+  +A+PY 
Sbjct: 1122 RHEVDVCENCGFMGYLGW------------------------CQRCKTSRGVVKMAIPYA 1157

Query: 1107 FRYLAAELAAMNIKITLQLGD 1127
             + L  EL +MN+   L+L D
Sbjct: 1158 AKLLVQELFSMNVVARLKLAD 1178



 Score = 90.1 bits (222), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 112/466 (24%), Positives = 186/466 (39%), Gaps = 56/466 (12%)

Query: 17  RHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPV 76
           R   E  D   D   +   + CR   ++Y   ++ D  F+Y+     V R     G+ PV
Sbjct: 131 RRADEEQDSKFDLASTITPNECRLRDMTYAAPILVD--FEYVRGRQRVKRNGTAIGRMPV 188

Query: 77  MLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFR 136
           ML++ +C L      ++  L+E   + GGYFI+NG E+    VIL ++        S  R
Sbjct: 189 MLRSSKCVLSNKSEAEMQLLQECPLDPGGYFIVNGTEK----VILVQEQL------SKNR 238

Query: 137 DRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDT 196
              E    K +V   V    +    K Y +L    R+          +P+ I+LKA+   
Sbjct: 239 VIVETDLKKDIVQASVTSSSNERKSKSYIILKKD-RIYMRHNVLSEDVPIVILLKAMGIQ 297

Query: 197 NDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHF- 255
           +D E+   L    D  ++            E   I   E   L + T+ Q L++IG    
Sbjct: 298 SDKEML-LLVAGIDSTFQ------------EDFAINFEESVKLGIYTQHQALEYIGSRIK 344

Query: 256 ---QPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFN----LLIFMLQKLFSLVDHTS 308
              +P   G+   ++   A   I   I  H+   N  F      +  M +++       S
Sbjct: 345 INRKPNSFGITRRNHVQEAIEAISSVIISHVVVENLNFRPKALYVAHMARRVLMAKHDPS 404

Query: 309 VSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKK------FDFFN 362
           + D+ D + N+ + L G L+ +      ED  +K +  I+  I+   KK      FD + 
Sbjct: 405 LVDDRDYVGNKRLELAGQLLALL----FEDLFKKFQFDIKMNIDKVLKKPVRTEQFDAYG 460

Query: 363 LANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFR 422
           +  I           I   +   + TG  + +      +RAG T    RL+++  +    
Sbjct: 461 VVAIH-------GNHITQGMNRAISTGNWSLKRF--RMERAGVTHVLSRLSYIAALGMMT 511

Query: 423 AVHRGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMT 467
            +   + F   R  S  R L P  +G LCP  TP+GE CGL+ ++ 
Sbjct: 512 RI--SSQFEKTRKVSGPRALQPSQFGMLCPSDTPEGEACGLVKNLA 555


>gi|330934625|ref|XP_003304626.1| hypothetical protein PTT_17275 [Pyrenophora teres f. teres 0-1]
 gi|311318641|gb|EFQ87258.1| hypothetical protein PTT_17275 [Pyrenophora teres f. teres 0-1]
          Length = 1214

 Score =  335 bits (859), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 197/508 (38%), Positives = 261/508 (51%), Gaps = 51/508 (10%)

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH EI P  +L  VA L PY  HNQSPRN YQC M KQ +G        R D  LY +  
Sbjct: 744  THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYLMVY 803

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
            PQ P+V+T T      D+ P G NA VAV++Y+GYD+EDA+ILNK+S DRG    Q+ + 
Sbjct: 804  PQQPMVKTRTIELTKYDKLPAGQNATVAVMSYSGYDIEDALILNKASCDRGFGRCQVMKK 863

Query: 748  ETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYC------SIY 801
                L    N           + D KS H  I  DG+  VG  I  G+ Y          
Sbjct: 864  HVTQLKTYANGTSDRINAGALDTDNKS-HQAIGKDGIAQVGARIEAGDAYLLKSIPLDTA 922

Query: 802  DKTTNSWRTNSRK--GSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHG 859
               TN+++    K    +  ++D   V    +     K  + FR TR P +GDKFSSRHG
Sbjct: 923  GPATNTYKDKPEKYKNPDFSYIDKACVTENEAGVTLIK--LLFRQTRRPELGDKFSSRHG 980

Query: 860  QKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDA 919
            QKG    +    DMPF+   G+ PD+I+NPH FPSRMT+  ++E ++ K G L+G     
Sbjct: 981  QKGTTGLIVQQEDMPFND-QGICPDIIMNPHGFPSRMTVGKMMELLSGKAGVLNGTLEYG 1039

Query: 920  TPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGP 979
            T F        G T  D SK LVD+        GF+Y G + L SG+ G       F GP
Sbjct: 1040 TAFG-------GSTVEDMSKILVDK--------GFSYTGKDYLTSGITGEAHQFYTFFGP 1084

Query: 980  VYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHD 1039
            +YYQ+L+HMV DK   R+ G    +TRQP +GR R GG+R GEMERD L+A+GA+ LL +
Sbjct: 1085 IYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRARDGGLRLGEMERDCLIAYGASQLLLE 1144

Query: 1040 RLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGME 1099
            RL   SD H  DVC  CG +  + +                        C  C++ K + 
Sbjct: 1145 RLMLSSDAHTVDVCEKCGQMGYSGY------------------------CKLCESEKAVR 1180

Query: 1100 TVAMPYVFRYLAAELAAMNIKITLQLGD 1127
             + MPY  + L  EL +MN+K+T+ L D
Sbjct: 1181 KITMPYAAKLLIQELGSMNVKVTIGLED 1208



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 96/462 (20%), Positives = 188/462 (40%), Gaps = 69/462 (14%)

Query: 36  DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
           + CR   ++Y   ++ D+   Y    + V R     G+ P+MLK+ +C L     +++  
Sbjct: 184 NECRLRDMTYAAPIVVDI--IYTRGNAKVKRTGIKIGRMPIMLKSNKCVLADKSDREMAV 241

Query: 96  LKEEAAEMGGYFILNGLERVF---------RSVILPKQNYPMSMVRSSFRDRREGYTDKA 146
           + E   + GGYFI  G E+V          R ++   +    + V SS  +RR     K 
Sbjct: 242 MDECPLDPGGYFITRGQEKVILVQEQLNKNRVIVESAKGIMQASVTSSTHERRT----KT 297

Query: 147 VVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLT 206
            VI+            L YL + ++            +P+  V+KAL   +D EI   + 
Sbjct: 298 YVIQ---------KKGLMYLRHNTL---------SEEIPIVFVMKALGVASDKEILV-MI 338

Query: 207 CCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGL---Q 263
              D  Y+            E++             T+ + L++IG   + V   L   +
Sbjct: 339 AGEDSAYQDNFSTNFEACAKEKI------------FTQERALEYIGHRVRLVKKPLGTSR 386

Query: 264 SESYYAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQ 319
           + +Y+  A   + + +  H+     +   K   +  M +++   + +  + D+ D + N+
Sbjct: 387 NRNYHLEAIECLSNVVLPHVPVEGTNYRPKALYVALMARRVLMAMQNPKLVDDRDYVGNK 446

Query: 320 EILLPGHLITIYLKEKLEDWLRKGKKLIQDEIEN--NGKKFDFFNLANIKKVMEKNPSKQ 377
            + L G ++++  ++  + +    K  I   ++     ++FD F+  ++ K         
Sbjct: 447 RLELSGQMLSLLFEDHFKRFNHDFKLSIDKVLKKPIRAQEFDAFSHFSVHK-------NH 499

Query: 378 IGTSIETMLKTGRLATQT-GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
           I   +E  + TG  + +   +D   RAG T    RL+++  +     +   + F   R  
Sbjct: 500 ITMGVERAIATGNWSLKRFKMD---RAGVTHVLSRLSYIAALGMMTRI--SSQFEKTRKV 554

Query: 437 S-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYD 477
           S  R L P  +G LC   TP+GE CGL+ ++     + +  D
Sbjct: 555 SGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTEDD 596


>gi|68300857|gb|AAY89365.1| RNA polymerase IV second largest subunit precursor [Chlamydomonas
            reinhardtii]
          Length = 1607

 Score =  335 bits (858), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 295/1056 (27%), Positives = 466/1056 (44%), Gaps = 138/1056 (13%)

Query: 38   CRQAKISYTGKLMADV-EFQYLDAGSPVVRER-----FNFGQFPVMLKTRRCHLQGADS- 90
             R   ++Y   L  DV + +Y   G   V E+      + G+ P+MLK+ RC+L  A + 
Sbjct: 105  ARLRNLTYCAPLYVDVTKTEYTRVGENEVEEKTDLSHVHLGKVPIMLKSERCNLHEASTE 164

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            Q+  +L E   + GGYF++NG E+V    ++ ++    + V    + +   YT  A +  
Sbjct: 165  QEATNLGECPYDQGGYFVINGSEKV----LIAQERMANNHVYVFKKSQPSKYTFCAEIRS 220

Query: 151  CVR---KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---LPVGIVLKALVDTNDLEIFNH 204
             V    +  SS+++ +      +   G       Y+    P+ I+ +AL   +D +I  H
Sbjct: 221  VVEGSTRSASSMSIMMLAKGKKAGAAGVIRAQIPYIRAEFPIFILFRALGFVSDRDILEH 280

Query: 205  LTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQS 264
            +    D            P + E ++  + E Q++   T+ + L ++G+  +  + G   
Sbjct: 281  IVYDLD----------ADPAMLEALRSSVEEAQEVQ--TQEEALNYLGK--RGTVTGASK 326

Query: 265  ESYYAVAETVIRDYIFVHLNDN----NDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQE 320
                  A  ++   +  HL         K   + +M+ +L  +       D+ D   N+ 
Sbjct: 327  ADRIQYARNLLIKELLPHLGTEEFMETRKGYFVGYMVHRLMLVALGRRPEDDRDHYANKR 386

Query: 321  ILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGT 380
            + L G L+    +      L K  ++    + + GK+ +  +  N          K I  
Sbjct: 387  LDLGGPLMAGLFRLLFRK-LCKELRMQAQRMVDAGKEINVISAIN---------DKVITR 436

Query: 381  SIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRK 440
             ++  L TG    Q    +  RAG +    RL +   +S  R V+      G +    R+
Sbjct: 437  GLKYSLATGNWGEQGKQGI--RAGVSQVLARLTYASTLSHLRRVNSPIGREG-KLAKPRQ 493

Query: 441  LLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVG 500
            L    WG  CP  TP+G+  GL+ +M   C +     S   +    +  T          
Sbjct: 494  LHNSLWGIFCPAETPEGQAVGLVKNMALMCYITVGTPSLPVVAHLEEFNTE--------- 544

Query: 501  MIPSLPKLVKSGPPAVLSVLLDGRVVGVI--PSSEIEKVVAHLRRLKVSAASVIPDDLEV 558
               +L ++  +   A   V ++G  +G+   P++ I+ + A  R++  S    I  D   
Sbjct: 545  ---ALDEVTPADIAASTKVFINGVWLGIQRDPTALIKNLRAMRRQVAFSTEVAIIYD--- 598

Query: 559  GYVPLSLGGAYPGLYLFTSPPKFVRPV----------------RNIS-LPSEESQN---- 597
                    G    L +FT   +  RP+                R IS LP E+       
Sbjct: 599  --------GPLKELRIFTDYGRASRPLYICEDNRLLVSKHHIRRLISPLPDEDEYAWPQL 650

Query: 598  -----IELIGPFEQ----VFMEIR-CPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPY 647
                 +E I   E+    + M I    +  + G       TH EIHP  +L V A++ P+
Sbjct: 651  VQDGLVEYIDAEEEETTMIAMTIADLRNAREAGAATGTTYTHCEIHPAMILGVCASIIPF 710

Query: 648  SDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYP 707
             DHNQSPRN YQ  M KQ MG      + R D + + L  PQ P+V T         E P
Sbjct: 711  PDHNQSPRNTYQSAMGKQAMGMYATNYQTRMDTQGFVLYYPQKPLVCTRAMDYLMFRELP 770

Query: 708  TGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFR 767
             G NAIVA++ Y+GY+ ED+++LN SS+DRG     +Y+    +    G+      +   
Sbjct: 771  AGINAIVAIMCYSGYNQEDSLMLNGSSIDRGFHRSILYRAYKEEEKKAGSMAREEIEAPD 830

Query: 768  RNKDAKSLHSV---IDSDGLPYVGQMIHPGEPYC----SIYDKTTNSWRTNSRK------ 814
             +  +K  H     +D+DGL   G  +   +  C    ++ D  T + +  ++K      
Sbjct: 831  PSVTSKMKHGTYDKLDADGLCPPGTRVSGEDIICGKTVTLPDDPTGAVQRFTKKDASLAL 890

Query: 815  -GSESVFVDYVAVDMKNSKNLPQK-ANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDID 872
             G E+  +D V   M  + +  QK   IR R    P +GDKF+SRHGQKG C   +   D
Sbjct: 891  RGHEAGVIDQV---MLTTNDEGQKFVKIRVRTICIPQVGDKFASRHGQKGTCGITYTMED 947

Query: 873  MPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGD 932
            MPF+   G+ PD+I+NPHA PSRMTI  L+E++ +K  SL G   DATPF          
Sbjct: 948  MPFTA-EGIVPDIIVNPHAIPSRMTIGHLVEALMSKVASLMGSEGDATPF---------- 996

Query: 933  TGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDK 992
                 +K  VD + +ML   G+   G EV+YSG  G +L  +IF+ P YYQRL+HMV  K
Sbjct: 997  -----TKVTVDNVSQMLHDLGYQRRGWEVMYSGHTGRQLRAQIFLNPTYYQRLKHMVDFK 1051

Query: 993  FQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSL 1028
               R  G +  +TRQP +GR R GG+RFGEMERD L
Sbjct: 1052 IHSRGRGPVQVLTRQPAEGRARDGGLRFGEMERDCL 1087


>gi|241958746|ref|XP_002422092.1| DNA-directed RNA polymerase III subunit, putative [Candida
            dubliniensis CD36]
 gi|223645437|emb|CAX40093.1| DNA-directed RNA polymerase III subunit, putative [Candida
            dubliniensis CD36]
          Length = 1157

 Score =  335 bits (858), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 199/519 (38%), Positives = 272/519 (52%), Gaps = 61/519 (11%)

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH EI P  +L  VA L PY  HNQSPRN YQC M KQ +G        R D  LY +  
Sbjct: 679  THLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFRRIDTLLYFMVY 738

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
            PQ P+V+T T      D+ P G NA VAV++Y+GYD+EDA++LNK+S+DRG    Q+ + 
Sbjct: 739  PQQPMVKTKTIELIEYDKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCQVVRK 798

Query: 748  ETIDLSDDGNKVDRGQKLFRRNKDAKSL--HSVIDSDGLPYVGQMIHPGEPYCSI----- 800
             T+ L    N         R +++ K +  H  +  DGL  VG  I  G+ + +      
Sbjct: 799  NTVQLKKYPNHTQDILAGMRVDENNKPIFPHQALGPDGLGEVGSRIFNGQVFANKCVPTN 858

Query: 801  ----------YDKTTNSWRTNSR--KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNP 848
                        +T  S R      KG E  ++D V   M  S N      +  R TR P
Sbjct: 859  SGDSTLGAQQEQRTAESHREAPAFYKGPEPSYIDQVM--MSVSDNDQALIKVLLRQTRRP 916

Query: 849  IIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
             +GDKFSSRHGQKGVC  +    D+PF+  +G+ PD+I+NPH FPSRMT+  ++E ++ K
Sbjct: 917  ELGDKFSSRHGQKGVCGIIVQQEDLPFND-SGISPDIIMNPHGFPSRMTVGKMIELISGK 975

Query: 909  GGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYG 968
             G L+G     T F        G    D SK LV++        GF+Y G ++LYSG+ G
Sbjct: 976  AGVLNGSLEYGTCFG-------GSKLEDMSKILVEK--------GFSYSGKDMLYSGITG 1020

Query: 969  TELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSL 1028
              L   IF GP+YYQ+L+HMV DK   R+ G    +TRQP +GR R GG+R GEMERD +
Sbjct: 1021 ECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCV 1080

Query: 1029 LAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVT 1088
            +A+GA+ LL +RL   SD    DVC+ CG +    +                        
Sbjct: 1081 IAYGASQLLLERLMISSDAFEVDVCNKCGLMGYNNW------------------------ 1116

Query: 1089 CHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
            C  C++S+ +  + +PY  + L  EL +MNI   L+LGD
Sbjct: 1117 CTTCKSSENVIKMTIPYAAKLLFQELLSMNIAPRLRLGD 1155



 Score = 98.6 bits (244), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 104/446 (23%), Positives = 195/446 (43%), Gaps = 61/446 (13%)

Query: 38  CRQAKISYTGKLMADVEFQYLDAGSPVVRER-FNFGQFPVMLKTRRCHLQGADSQKLVSL 96
           CR   ++Y+  +  DVE+     G  ++R      G+ PVML++ +C L+G     +  +
Sbjct: 117 CRLRDLTYSAPIYVDVEYT---RGRKIIRHNDLEIGRMPVMLRSNKCMLEGMSEATMAQV 173

Query: 97  KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC-VRKD 155
           +E   + GGYF++NG E+V   +++ +Q     ++  +  D ++G    +V      RK 
Sbjct: 174 EECPLDPGGYFVVNGTEKV---ILVQEQLSKNRIIVEA--DEKKGIVQASVTSSTHERKS 228

Query: 156 QSSVTLK--LYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKY 213
           ++ V  K    YL + S+            +P+ I+LKA    +DLEI   L C  D  Y
Sbjct: 229 KTYVITKNDKIYLKHNSISED---------IPIVIILKAAGIVSDLEIL-QLVCGSDPNY 278

Query: 214 KKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ-------PVIDGLQSES 266
           +            +   +   E   L + T+ Q L ++G+  +       P +  LQ E 
Sbjct: 279 Q------------DLFVVNFEEAARLEVFTQQQALYYVGKRVKTIRRAGAPKLSQLQ-EG 325

Query: 267 YYAVAETVIRDYIFVHLNDNNDKFN----LLIFMLQKLFSLVDHTSVSDNPDSLQNQEIL 322
             A+A T+I      HL  ++ +F      +  M +++   + +  + D+ D + N+ + 
Sbjct: 326 IEAIATTII-----AHLTVSDLQFKEKALYIATMARRVVMAMHNPKMVDDRDYVGNKRLE 380

Query: 323 LPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSI 382
           L G L+++  ++  + +    K  I   ++   +  +F  L +I        S  I   +
Sbjct: 381 LAGQLMSLLFEDLFKKFNSDFKANIDKVLKKPSRTSEFDALLSINI-----HSNNITMGL 435

Query: 383 ETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKL 441
              + TG  + +      +RAG T    RL+++  +     +   + F   R  S  R L
Sbjct: 436 NRAISTGNWSLKRF--KMERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRKVSGPRAL 491

Query: 442 LPESWGFLCPVHTPDGEPCGLLNHMT 467
            P  +G LC   TP+GE CGL+ ++ 
Sbjct: 492 QPSQFGMLCTADTPEGEACGLVKNLA 517


>gi|219116262|ref|XP_002178926.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217409693|gb|EEC49624.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 1212

 Score =  334 bits (857), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 312/1177 (26%), Positives = 493/1177 (41%), Gaps = 180/1177 (15%)

Query: 28   DEGLSEMFDH-CRQAKISYTGKLMADVEF-QYL------------DAGSPVVRERFN--- 70
            D  ++ MF H  R   ++Y+  L  DV+  QY             D G PV  E      
Sbjct: 117  DGTITNMFPHEARLRNMTYSAPLYVDVDLNQYQVGREVNVNDPSEDLGEPVATEHAKKEF 176

Query: 71   FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSM 130
             G  P+ML++  C L   D   L  L E   + GGYF++NG E+V    I+ ++    + 
Sbjct: 177  LGYVPIMLRSLFCVLSDKDDADLSDLGECVYDQGGYFVINGSEKV----IIAQERLSNNH 232

Query: 131  VRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLL-----NGSVRLGFWLQGKEYL-- 183
            V  +F+ ++       +  R   ++ +     LY  +      G++          Y+  
Sbjct: 233  V-YAFKKKQPSKFSWVIETRSQVENSTRPVSTLYIQMYHKGGRGAIEGNQIRSTLPYIRT 291

Query: 184  -LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLT 242
             +PV I+ +AL    D +I  H+       Y    G +         +  + + QD++L 
Sbjct: 292  DIPVVIIFRALGYVADRDIIEHVV------YDLTDGEMMDLFRPSLEEAFVIQRQDVAL- 344

Query: 243  TRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDN----NDKFNLLIFMLQ 298
                    IG   +     +  E     A+ +++  +  H+         K   + + + 
Sbjct: 345  ------DFIGR--RGSARDVTKEDRMRYAQAILQKEVLPHVGTEEHCETKKGFFIGYAVH 396

Query: 299  KLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLK---EKLEDWLRKGKKLIQDEIENNG 355
            KL       +  D+ D    + + L G L+    +    KL   +RK  +   DE    G
Sbjct: 397  KLLMCRLGRAEEDDRDHFGKKRLDLAGPLLGGLFRVLFRKLTKDVRKHLQRCLDE----G 452

Query: 356  KKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFL 415
            K F      NI   ++ N    I   ++  L TG    +    +  +AG +    RL + 
Sbjct: 453  KHF------NIGAAIKSN---HITDGLKYSLATGNWGDK---GMATKAGVSQVLNRLTYA 500

Query: 416  RFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASY 475
              +S  R  +   +  G +    R+L    WG +CP  TP+G+  GL+ ++     + + 
Sbjct: 501  SSLSHLRRCNTPLARTG-KQAKPRQLHNTHWGMVCPAETPEGQAVGLVKNLALMAYITTG 559

Query: 476  YDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSE-I 534
                  +    +  T  L  +        LP ++    P    + ++G  VG+    + +
Sbjct: 560  TAQVPVLEFLEEFSTENLTDI--------LPSVI--AEPNTCKIFVNGNWVGIHRDPKAL 609

Query: 535  EKVVAHLRRL-KVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV-----RNI 588
            E+    LRR+  + A   I  D+           A   + ++T   +  RP+     + +
Sbjct: 610  EETFRSLRRMVDIDAEVSIVRDI-----------ADKEVRIYTDAGRICRPLFVVQEQKL 658

Query: 589  SLPSEESQNIELIGPFEQ-------------------------VFMEIRCPDGGDGGRRN 623
            ++       ++ + P E+                         V ME   P+  D     
Sbjct: 659  AIKKHHIMQLQGMDPNEKKLTWTDLLMEGLVEYIDTEEEETTMVAME---PNDLDSDDSY 715

Query: 624  AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
            +   TH EIHP+ +L V A++ P+ DHNQSPRN YQ  M KQ MG      + R D   +
Sbjct: 716  SSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQVRMDTMAH 775

Query: 684  HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
             L  PQ P+  T         E P+G N IV +L YTGY+ ED++ILN+S++DRG+    
Sbjct: 776  VLHYPQKPLCTTRAMEFLHFRELPSGVNCIVGILVYTGYNQEDSLILNQSAIDRGLFRSS 835

Query: 744  IYQT--ETIDLSDDGNKVDRGQKLFRR-NKDAK-----SLHSVIDSDGLPYVGQMIH--- 792
             Y+   +    S  G       +LF + + D+        +  +D DGL   G  +    
Sbjct: 836  YYRCYIDQEKASTVGTIGSLTSELFEKPSMDSTRGMKHGEYGKLDDDGLVAPGTRVSGDD 895

Query: 793  -------PGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHT 845
                   P +    +  + +    + S K +E   VD V +    +K   +   +R R+ 
Sbjct: 896  VLIGKTAPIDATAGMPSRYSKRDCSTSMKANEHGIVDNVLI--STTKEGYRFTKVRIRNV 953

Query: 846  RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
            R P IGDKF+SRHGQKG     +   DMPF+ V G+ PD+I+NPHA PSRMTIA L+E +
Sbjct: 954  RTPQIGDKFASRHGQKGTIGMTYRQEDMPFT-VEGIVPDIIVNPHAIPSRMTIAQLIECL 1012

Query: 906  AAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSG 965
              K     G   DATPF +                 V+++   L   G+  HG E LY G
Sbjct: 1013 LGKVVVFQGCEGDATPFTDVT---------------VEDISTRLHAMGYQRHGNEALYQG 1057

Query: 966  VYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMER 1025
              G  L   +FIGP +YQRL+H+V DK   R+ G +  +TRQP++GR R GG+R GEMER
Sbjct: 1058 HTGRPLNARVFIGPTFYQRLKHLVDDKVHSRARGPVAMLTRQPLEGRSRDGGLRMGEMER 1117

Query: 1026 DSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPK 1085
            D L+ HG A  + DR    SD +   +C  CG    A      K+   E       R+P 
Sbjct: 1118 DCLITHGCANFMRDRFFVNSDQYRIHICERCGLTAQANL----KKMTYE------CRSPM 1167

Query: 1086 KV--TCHACQTSKGMETVAMPYVFRYLAAELAAMNIK 1120
             V      CQ       V +PY  + L  EL +M I+
Sbjct: 1168 CVGRPTQICQ-------VEIPYAAKLLLQELNSMCIQ 1197


>gi|308161806|gb|EFO64240.1| DNA-directed RNA polymerase subunit B' [Giardia lamblia P15]
          Length = 1239

 Score =  334 bits (857), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 266/872 (30%), Positives = 407/872 (46%), Gaps = 129/872 (14%)

Query: 311  DNPDSLQNQEILLPGHLITIYLKEKLEDWL----RKGKKLIQDEIENNGKKFDFFNLANI 366
            D+ D + N++I   G L+ +   +  +  L    RK   +++ +  N G     +++ ++
Sbjct: 440  DSKDFVGNKKIETAGDLLELIFDDAFKTLLAHMVRKVDNILRSD-RNRGTDLTNYDIVSL 498

Query: 367  KKVMEKNPSKQIGTSIETMLKTGRLATQ-TGLDLQQRAGYTVQAERLNFLRFISFFRAVH 425
                    S  I  +  T + TG    +  G+D   R G +   + L+ L +IS    V 
Sbjct: 499  VD------SSIITRAFNTAISTGNWKIEKIGVD---RVGVS---QVLSRLSYISALGQVT 546

Query: 426  RGASF--AGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIR 483
            R +S     ++++  R L     G  CP  TP+GE  G++ +++   R++         +
Sbjct: 547  RLSSTFDKAMKSSGPRMLNFSQMGIFCPSDTPEGESVGIVKNLSIMARIS---------K 597

Query: 484  DFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVA 539
            D S    S L + IGV  + S      SG    L     V L+G + GVI    ++  + 
Sbjct: 598  DESTDSISKLLMSIGVEDLAS----CWSGDTFSLGYGYMVFLNGTIKGVIAKDMLKGFII 653

Query: 540  HLRRLKVSAASVIPDDLEVGYVP----LSLGGAYPGLYLFTSPPKFVRP---VRNISLPS 592
             LR  +             GY+           +  +Y+     +  RP   V N  L  
Sbjct: 654  TLRTFR-----------RKGYISYLTSFHFNDEHQAVYINCDSGRACRPLLIVENGKLML 702

Query: 593  EESQNIELIGPFEQVFME------IRCPDGGDGGRRNAFPA----------THEEIHPTG 636
              + +IEL+   ++ F++      +   D  +   +NA+ A          TH EI    
Sbjct: 703  TRN-DIELLMDNQKCFVDLIYEGKVEYLDVNEA--KNAYIAMDTKDLTPQHTHCEIESYT 759

Query: 637  MLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTN 696
            +L  V  L PY  HNQSPRN YQC M KQ  G        R +  ++ L  PQ P+  T 
Sbjct: 760  LLGYVVGLIPYPHHNQSPRNCYQCSMGKQASGAIAFNQLERFETAMFLLDYPQRPLTSTK 819

Query: 697  TYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDG 756
                 G +  P G NA V V++Y+ +D+EDA+ILN++++DRG     IY++ + +L+  G
Sbjct: 820  ILKLTGYERLPAGQNATVCVMSYSSFDIEDALILNRNAIDRGFGRCSIYRSISTELNSIG 879

Query: 757  NKVDRGQK--LFRRNKDAKSLHS---VIDSDGLPYVGQMIHPGEPYCSIYDKTTN----- 806
            +K   G K  L    KD    +     I+ DGL  VG  +  G+   +     TN     
Sbjct: 880  SKSVDGIKDILLGPPKDHLKQYEGYHAIEDDGLCAVGAHLKTGDIVINKGRHITNIPGLS 939

Query: 807  ---SWRTNSRKGSESV--------FVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFS 855
                   +  K  ES+        ++D V V      N+  K  +  R  R P +GDKFS
Sbjct: 940  DGTEATVSLIKSPESLKSPLETTTYIDKVLVTTNGDGNMLIK--VLTREPRRPEVGDKFS 997

Query: 856  SRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGK 915
            SRHGQKGVC  + P  D+PF+   G+ PDLI+NPH +PSRMT+A LLE ++ K G   G+
Sbjct: 998  SRHGQKGVCGLIVPQSDLPFTS-QGIVPDLIMNPHGYPSRMTVAKLLELLSNKSGCFRGE 1056

Query: 916  FMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEI 975
              D T F          T TDE+   + EL + LR  GF+Y G +VLYSG+ G  +   I
Sbjct: 1057 QTDGTCFR---------TKTDET--FLAELYDSLRVAGFSYSGKDVLYSGLTGDVIPVYI 1105

Query: 976  FIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAY 1035
            F GP+YYQ+L+HMV DK   R TG +  +TRQP +GR+  GG+R GEMERD  +++GA+ 
Sbjct: 1106 FNGPIYYQKLKHMVKDKIHSRGTGPITMLTRQPTEGRRVHGGLRMGEMERDCAISYGASA 1165

Query: 1036 LLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTS 1095
            LL +R    SD  +A VC  CG      F + +  A+                C  CQ+ 
Sbjct: 1166 LLLERFMLSSDDFLAYVCETCG-----LFSYEKNGALW---------------CPTCQSG 1205

Query: 1096 KGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
            K +  + +PY  + +  EL +M + + +QL D
Sbjct: 1206 KDVVKIRIPYAAKLMIQELISMGVLVRMQLED 1237



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 73/170 (42%), Gaps = 17/170 (10%)

Query: 37  HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
            CRQ  ++Y   +  DV  +  +  S    +    G  P+ML++ RC L     ++   L
Sbjct: 102 ECRQRNMTYAAPITIDVRCKASNKSSVQYYKDICIGYIPIMLRSNRCILTNKSRKQQAFL 161

Query: 97  KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
           +E   + GGYFI+ G E   +S++L +Q   M+M R       +G  +  V      +  
Sbjct: 162 QECPDDPGGYFIVRGAE---KSILLAEQ---MTMNRIVVGRNADGNVEVTVASNTTERKS 215

Query: 157 SSVTL---KLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFN 203
               L   K +YL++            +  +P+  V KA+   ND+ + +
Sbjct: 216 RCAVLYKNKKFYLIHNKF--------NKKPIPIVTVFKAMGFVNDVTVLS 257


>gi|357138000|ref|XP_003570586.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Brachypodium
            distachyon]
          Length = 1158

 Score =  334 bits (857), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 209/521 (40%), Positives = 274/521 (52%), Gaps = 52/521 (9%)

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH EI P  +L VVA L PY  HNQSPRN YQC M KQ MG       FRAD  LY L  
Sbjct: 670  THIEIEPMTILGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLFRADSLLYLLVY 729

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGM--CHGQIY 745
             Q P++ T T    G D+   G NA VAV++Y+GYD+EDA+++NKSS+DRG   C     
Sbjct: 730  AQRPLLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIAMKK 789

Query: 746  QTETIDLSDDGNKVDRGQKLFRRNKDA---KSLHSVIDSDGLPYVGQMIH---------- 792
             T T +   +G   DR  K  +R+KD    K     +D DG    GQ+I           
Sbjct: 790  YTVTTEKYANGTISDRIAKP-QRDKDGALIKQNMRALDEDGFVAPGQIIRNHDIYVNKQT 848

Query: 793  ----PGEPYCSIYDKT-TNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRN 847
                P  P  ++ D+   +S         E+  VD V +    +  L  K  IR  HTR 
Sbjct: 849  PKAIPKTPGTTLTDRDYKDSPAVYKGVDGETTVVDRVMLCSDTNDKLTIKCIIR--HTRR 906

Query: 848  PIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAA 907
            P +GDKFSSRHGQKGVC  +    D PFS   G+ PDLI+NPH FPSRMTI  ++E +  
Sbjct: 907  PEVGDKFSSRHGQKGVCGTIVQQEDFPFSE-RGICPDLIMNPHGFPSRMTIGKMIELLGG 965

Query: 908  KGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVY 967
            K G   G+F   + F  S    N D   D S +LV          GF+Y+G + LYSG+ 
Sbjct: 966  KAGVSCGRFHYGSAFGES--SGNADHVDDISHTLVKH--------GFSYNGKDFLYSGIL 1015

Query: 968  GTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDS 1027
            G  L   IF+GP+YYQ+L+HMV DK   R++G    +TRQP +GR R GG+R GEMERD 
Sbjct: 1016 GHPLEAYIFMGPIYYQKLKHMVLDKMHARASGPRVLLTRQPTEGRSRDGGLRLGEMERDC 1075

Query: 1028 LLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKV 1087
            L+A+GA+ L+ +RL   SD +   VC  CG  L   + +  K +                
Sbjct: 1076 LIAYGASMLIFERLLLSSDPYQVQVCRKCG--LLGYYNYKLKTSF--------------- 1118

Query: 1088 TCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGDG 1128
             C  C+  + M  + MPY  + L  EL +MN+   L+L +G
Sbjct: 1119 -CSMCKNGENMAKMRMPYACKLLFQELQSMNVVPRLKLTEG 1158



 Score = 99.4 bits (246), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 112/515 (21%), Positives = 204/515 (39%), Gaps = 94/515 (18%)

Query: 9   FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
           F  +R LV+ HI+SF+Y + +G+  +                                  
Sbjct: 45  FLKVRGLVKEHIDSFNYFITKGIKNIVQANNRIEARSDPSIYLRYKDIRVGEPSVQVDFR 104

Query: 37  -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNF--GQFPVMLKTRRCHLQG 87
                   CR    +Y+  ++ D+E  Y    + VV  + NF  G  P+ML++  C L G
Sbjct: 105 VETITPHFCRLTDRTYSAPVIVDIE--YTVGKTHVVHRKPNFIIGYMPIMLRSYACVLNG 162

Query: 88  ADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAV 147
            D  +L    E   + GGYF++ G E+V   +++ +Q     ++  +   +R        
Sbjct: 163 KDEAELARYGECPLDPGGYFVVKGNEKV---ILIQEQLSKNRIIIDTDNKKR-------- 211

Query: 148 VIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--LPVGIVLKALVDTNDLEIFNHL 205
           VI  V      V  K   +++   +   +LQ  ++   +P+ +V+KA+   +D EI    
Sbjct: 212 VIASVTSSTHEVKSKTVIVMD---KEKIYLQLNQFTKPIPIIVVMKAMGIQSDQEIVQ-- 266

Query: 206 TCCYDEKYKKEKGAVG-SPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQS 264
                         VG  P   + + + + E     + T+ Q LQ++ +       G   
Sbjct: 267 -------------MVGRDPRYGDLLYLSIQECASERIYTQQQALQYMDDKVMFPGPGNVK 313

Query: 265 ESYYAVAETVIRDYIFVHLNDNNDKFN----LLIFMLQKLFSLVDHTSVSDNPDSLQNQE 320
           E     ++T++RD    H+   N  F         ML+++   + ++   D+ D + N+ 
Sbjct: 314 EGR---SKTLLRDVFVAHVPVENGNFREKCIYTAVMLRRMLDAILNSDTFDDKDYVGNKR 370

Query: 321 ILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGT 380
           + L G L+++      ED  +       D +  N        L   + +M+++    I T
Sbjct: 371 LELSGQLVSLLF----EDLFKTMNSFAVDRMNKNSDMARSSPLDFSQLIMQQD---LITT 423

Query: 381 SIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VR 439
            +E  + TG    +       R G +    RL+++  + +   +     F   R TS  R
Sbjct: 424 GLERAISTGNWDIKRFK--MHRKGVSQVLSRLSYMASLGYMTRI--TPQFEKTRKTSGPR 479

Query: 440 KLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVAS 474
            L P  WG LCP  TP+GE CGL  ++     V +
Sbjct: 480 ALQPSQWGMLCPCDTPEGEACGLTKNLALLTHVTT 514


>gi|159119582|ref|XP_001710009.1| DNA-directed RNA polymerase subunit B' [Giardia lamblia ATCC 50803]
 gi|157438127|gb|EDO82335.1| DNA-directed RNA polymerase subunit B [Giardia lamblia ATCC 50803]
          Length = 1238

 Score =  334 bits (857), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 272/872 (31%), Positives = 410/872 (47%), Gaps = 129/872 (14%)

Query: 311  DNPDSLQNQEILLPGHLITIYLKEKLEDWL----RKGKKLIQDEIENNGKKFDFFNLANI 366
            D+ D + N++I   G L+ +   +  +  L    RK   +++ +  N G      +L N 
Sbjct: 439  DSKDFVGNKKIETAGDLLELIFDDAFKTLLAHMVRKVDSVLRSD-RNRGT-----DLTNY 492

Query: 367  KKVMEKNPSKQIGTSIETMLKTGRLATQ-TGLDLQQRAGYTVQAERLNFLRFISFFRAVH 425
              V   +PS  I  +  + + TG    +  G+D   R G +   + L+ L +IS    V 
Sbjct: 493  DIVSLVDPSI-ITRAFNSAISTGNWKIEKIGVD---RVGVS---QILSRLSYISALGQVT 545

Query: 426  RGASF--AGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIR 483
            R +S     ++++  R L     G  CP  TP+GE  G++ +++   R++         +
Sbjct: 546  RLSSTFDKAMKSSGPRMLNFSQMGIFCPSDTPEGESVGIVKNLSIMARIS---------K 596

Query: 484  DFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVA 539
            D S    S L + IGV  + S      SG    L     V L+G + GVI    ++  + 
Sbjct: 597  DESTDSISKLLMSIGVEDLAS----CWSGDTFSLGYGYMVFLNGTIKGVIAKDMLKGFII 652

Query: 540  HLRRLKVSAASVIPDDLEVGYVP----LSLGGAYPGLYLFTSPPKFVRP---VRNISLPS 592
             LR  +             GY+           +  +Y+     +  RP   V N  L  
Sbjct: 653  TLRTFR-----------RRGYISYLTSFHFNDEHQAVYINCDSGRACRPLLIVENGKLML 701

Query: 593  EESQNIELIGPFEQVFME------IRCPDGGDGGRRNAFPA----------THEEIHPTG 636
              S +IEL+   ++ F++      +   D  +   +NA+ A          TH EI    
Sbjct: 702  TRS-DIELLVDNQKCFVDLIYEGKVEYLDVNEA--KNAYIAMDTKDLTPQHTHCEIESYT 758

Query: 637  MLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTN 696
            +L  V  L PY  HNQSPRN YQC M KQ  G        R +  ++ L  PQ P+  T 
Sbjct: 759  LLGYVVGLIPYPHHNQSPRNCYQCSMGKQASGAIAFNQLERFETAMFLLDYPQQPLTSTK 818

Query: 697  TYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDG 756
                 G +  P G NA V V++Y+ +D+EDA+ILN++++DRG     IY++ + +L+  G
Sbjct: 819  ILKLTGYERLPAGQNATVCVMSYSSFDIEDALILNRNAIDRGFGRCSIYRSVSTELNSIG 878

Query: 757  NKVDRGQK--LFRRNKDAKSLHS---VIDSDGLPYVGQ-------MIHPGEPYCSIYDKT 804
            +K   G K  L    KD    +     I+ DGL  VG        +I+ G    +I   +
Sbjct: 879  SKSVDGIKDILLGPPKDHLKQYEGYHAIEDDGLCAVGAHLKTGDIVINKGRHITNIPGLS 938

Query: 805  TNSWRTNSR-KGSESV--------FVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFS 855
              +  T S  K  ES+        +VD V V      N+  K  +  R  R P +GDKFS
Sbjct: 939  DGTEATASLIKAPESLKSPLETITYVDKVLVTTNGDGNMLIK--VLTREPRRPEVGDKFS 996

Query: 856  SRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGK 915
            SRHGQKGVC  + P  D+PF+   G+ PDLI+NPH +PSRMT+A LLE ++ K G   G+
Sbjct: 997  SRHGQKGVCGLIVPQSDLPFTS-QGIVPDLIMNPHGYPSRMTVAKLLELLSNKSGCFRGE 1055

Query: 916  FMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEI 975
              D T F          T TDE+   + EL + LR  GF+Y G +VLYSG+ G  +   I
Sbjct: 1056 QTDGTCFR---------TKTDET--FLAELYDSLRVAGFSYSGKDVLYSGLTGDVIPVYI 1104

Query: 976  FIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAY 1035
            F GP+YYQ+L+HMV DK   R TG +  +TRQP +GR+  GG+R GEMERD  +++GA+ 
Sbjct: 1105 FNGPIYYQKLKHMVKDKIHSRGTGPITMLTRQPTEGRRVHGGLRMGEMERDCAISYGASA 1164

Query: 1036 LLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTS 1095
            LL +R    SD  +A VC  CG          +K  +              + C  CQ+ 
Sbjct: 1165 LLLERFMLSSDDFLAYVCETCG------LFSYEKNGV--------------LWCPTCQSG 1204

Query: 1096 KGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
            K +  + +PY  + +  EL +M + + +QL D
Sbjct: 1205 KDVVKIRIPYAAKLMIQELISMGVLVRMQLED 1236



 Score = 53.9 bits (128), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 73/170 (42%), Gaps = 17/170 (10%)

Query: 37  HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
            CRQ  ++Y   +  DV  +  +  S    +    G  P+ML++ RC L     ++   L
Sbjct: 102 ECRQRNMTYAAPITIDVRCKASNKSSVQYYKEICIGYIPIMLRSNRCILTNKSRKQQAFL 161

Query: 97  KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
           +E   + GGYFI+ G E   +S++L +Q   M+M R       +G  +  V      +  
Sbjct: 162 QECPDDPGGYFIVRGAE---KSILLAEQ---MTMNRIVLGRNADGNVEVTVASNTTERKS 215

Query: 157 SSVTL---KLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFN 203
               L   K +YL++            +  +P+  V KA+   ND+ + +
Sbjct: 216 RCAVLYKNKKFYLIHNKF--------NKKPIPIVTVFKAMGFVNDVTVLS 257


>gi|255950612|ref|XP_002566073.1| Pc22g21780 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211593090|emb|CAP99466.1| Pc22g21780 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1208

 Score =  334 bits (856), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 195/517 (37%), Positives = 269/517 (52%), Gaps = 60/517 (11%)

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH EI P  +L  VA L PY  HNQSPRN YQC M KQ +G        R D  LY +  
Sbjct: 727  THLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFQRIDSILYLMVY 786

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
            PQ P+V++ T      D+ P G NA VAV++Y+GYD+EDA++LNK SVDRG    Q+++ 
Sbjct: 787  PQKPMVKSRTIELTKYDQLPAGQNATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRK 846

Query: 748  ETIDLSD--DGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCS-IYDKT 804
                L    +G K       F      +  H++++SDGL  VG+M++ GE Y + +  + 
Sbjct: 847  YVTTLKSYPNGAKDSLRAPTFENGAPIRK-HALLESDGLAAVGEMVNNGETYINKVTPRV 905

Query: 805  TNSWRTN--------------SRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPII 850
             NS   +              + K  +  ++D V V     +   Q   +  R TR P +
Sbjct: 906  QNSLGFSGPDIGGGDVLEAPMNYKLPDPSYIDKVLVSATEGET--QLIKVLTRQTRRPEV 963

Query: 851  GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGG 910
            GDKFSSRHGQKGV   +    DMPFS   G+ PD+I+NPH FPSRMT+  +LE VA K G
Sbjct: 964  GDKFSSRHGQKGVVGIIADQADMPFSD-QGINPDIIMNPHGFPSRMTVGKMLELVAGKAG 1022

Query: 911  SLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTE 970
             L G+    T F  S                V E+ ++L   GF+Y G + L SG+ G  
Sbjct: 1023 VLSGQHGYGTCFGGSP---------------VQEMSQILIDKGFSYGGKDYLTSGITGEP 1067

Query: 971  LTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLA 1030
            L   +F GP+YYQ+L+HMV DK   R+ G    +TRQP +GR R GG+R GEMERD L+A
Sbjct: 1068 LPFYVFTGPIYYQKLKHMVQDKMHSRAKGPTATLTRQPTEGRSRNGGLRLGEMERDCLIA 1127

Query: 1031 HGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCH 1090
            +G + LL +RL   SD H  D+C  CG +    +                        C 
Sbjct: 1128 YGTSQLLLERLMISSDRHEVDICEKCGFMGYLNW------------------------CP 1163

Query: 1091 ACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
             C++S+ +  + +PY  + L  EL +MN+   L+L D
Sbjct: 1164 GCKSSRSVVKMVIPYAAKLLIQELMSMNVTARLKLDD 1200



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 101/461 (21%), Positives = 192/461 (41%), Gaps = 54/461 (11%)

Query: 37  HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
            CR    +Y   ++ D  F+Y+     V+R     G+ P+ML++ +C L      ++  L
Sbjct: 168 ECRLRDTTYAAPILVD--FEYVRGRQRVIRRAVPIGRIPMMLRSSKCVLSNKTPAQMSVL 225

Query: 97  KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
            E   + GGYF++NG E+    VIL ++    + +      +++            RK +
Sbjct: 226 NECPLDPGGYFVVNGTEK----VILVQEQLSKNRIIVETDPKKDIVQASVTSSSNERKSK 281

Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
           S       Y+++   RL          +P+ I+LKA+    D E+   +T          
Sbjct: 282 S-------YIVSKKGRLYVKHNVLNEDIPIVILLKAMGIHTDKEMMQMVTG--------- 325

Query: 217 KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQS--------ESYY 268
                  L  +   I   E  ++ + T+ Q L  IG   +  I+  Q+        E+  
Sbjct: 326 ----DDALYQDDFAINFEEAINVDVYTQQQALDWIGCRIK--INRKQAAYRKTHVQEAVE 379

Query: 269 AVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
           A+A  +I  +I V   +   K   +  M +++       ++ D+ D L N+ + L G ++
Sbjct: 380 AIASVII-SHIEVKDMNFRPKAIYVAHMARRVLMAKSDPALVDDRDYLGNKRLELAGQML 438

Query: 329 TIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIET---M 385
            +  ++  + +    K  I D++ N   + + F+   I  +   + ++ +  +I T    
Sbjct: 439 ALLFEDLFKKFCFDIKMNI-DKVLNKRNRAEQFDAWTIVTMHGNHITQGMNRAISTGNWS 497

Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPE 444
           LK  R+         +RAG T    RL+++  +     +   + F   R  S  R L P 
Sbjct: 498 LKRFRM---------ERAGVTHVLSRLSYIAALGMMTRI--SSQFEKTRKVSGPRALQPS 546

Query: 445 SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDF 485
            +G LCP  TP+GE CGL+ ++     + +  D  G +R+ 
Sbjct: 547 QFGMLCPADTPEGEACGLVKNLALMTHITT-NDEEGPVRNL 586


>gi|241813048|ref|XP_002416483.1| DNA-directed RNA polymerase II, putative [Ixodes scapularis]
 gi|215510947|gb|EEC20400.1| DNA-directed RNA polymerase II, putative [Ixodes scapularis]
          Length = 1142

 Score =  334 bits (856), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 304/1143 (26%), Positives = 492/1143 (43%), Gaps = 173/1143 (15%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   V    ++   G+ P+ML++  C L     
Sbjct: 109  MPNEARLRNLTYSAPLYVDITKTVIKEGEEPVETQHQKTFIGKIPIMLRSTYCLLNSLTD 168

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V     L  Q    +     F+ +   +  KA    
Sbjct: 169  RDLSELNECPLDPGGYFIINGSEKV-----LIAQEKMATNTVYVFQMKDSKFVFKAECRS 223

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL +  L  G   +     G+  +         +P+ IV +AL    D +
Sbjct: 224  CLEHSSRPTSTLWVNMLARGGQGVRKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 283

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAE---VQDLSLTTRLQCLQHIGEHFQP 257
            I  H+   +++           P + E VK  L E   +Q+ ++   L  +   G H   
Sbjct: 284  ILEHIIYDFED-----------PEMMEMVKPSLDEAFVIQEQNVA--LNFIGARGAH--- 327

Query: 258  VIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNP 313
               G+  E     +  +++  +  H+  ++     K   L +M+ +L          D+ 
Sbjct: 328  --PGVTKERRIKYSREILQKEMLPHVGVSDFCETKKAYYLGYMVHRLLLAALGRRELDDR 385

Query: 314  DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKN 373
            D   N+ + L G L+    +    + L K  ++   +  + GK F+   LA IK      
Sbjct: 386  DHYGNKRLDLAGPLMAFLFRGLFRN-LTKEVRMYAQKFIDRGKDFNL-ELA-IK------ 436

Query: 374  PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
             ++ I   +   L TG    Q     Q RAG +    RL +   +S  R V+      G 
Sbjct: 437  -TRIITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTYASTLSHLRRVNSPIGRDG- 493

Query: 434  RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
            +    R+L    WG +CP  TP+G   GL+ ++     + SY              + IL
Sbjct: 494  KLAKPRQLHNTLWGMICPAETPEGHAVGLVKNLA----LMSYIS-------VGSQPSPIL 542

Query: 494  RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VS 547
              L    M  +L ++  S       + ++G  VG+    + ++++  LR+L+      VS
Sbjct: 543  EFLEEWSM-ENLEEIAPSAIAEATKIFVNGCWVGI--HRDPDQLMNTLRKLRRQMDIIVS 599

Query: 548  AASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNI-SLPSEESQN--------- 597
              S++ D  +      +  G      L     K +   R+I SL   E  N         
Sbjct: 600  EVSMVRDIRDREIRIYTDAGRICRPLLIVEDQKLLLKRRHIDSLKEREYNNYSWQDLVAS 659

Query: 598  --IELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQS 653
              +E I   E+  V + +   D  D G       TH EIHP+ +L V A++ P+ DHNQS
Sbjct: 660  GVVEYIDTLEEETVMLSMTPDDLQDKGFAYCSTYTHCEIHPSMILGVCASIIPFPDHNQS 719

Query: 654  PRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAI 713
            PRN YQ  M KQ MG  +     R D   + L  P  P+  T +       E P G N+I
Sbjct: 720  PRNTYQSAMGKQAMGIYITNFHVRMDTLAHVLYYPHKPLTTTRSMEYLRFRELPAGINSI 779

Query: 714  VAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVDRGQKLFRRNKDA 772
            VA+++YTGY+ ED++I+N S+VDRG      Y++ +  +    G++ ++ +K  R     
Sbjct: 780  VAIMSYTGYNQEDSIIVNASAVDRGFFRSVFYRSYKDSECKRVGDQEEQFEKPTRETCQG 839

Query: 773  --KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGS 816
               +++  +D DG+   G  +   +       ++ +   +   TN R          + S
Sbjct: 840  MRNAIYDKLDDDGIIAPGTRVSGDDVIIGKTITLPENDDDLESTNRRFTKRDASTFLRNS 899

Query: 817  ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS 876
            E+  VD V + + N++   +   IR R  R P IGDKF+SRHGQKG C   +   DMPF+
Sbjct: 900  ETGIVDQVMLTV-NAEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGITYRQEDMPFT 957

Query: 877  GVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTD 936
               G+ PD+IINPHA PSRMT                                       
Sbjct: 958  A-DGLTPDIIINPHAIPSRMT--------------------------------------- 977

Query: 937  ESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVR 996
                   ++  +L+  G++  G EV+Y+G  G ++  +IF+GP YYQRL+HMV DK   R
Sbjct: 978  -------KISNLLQEYGYHLRGNEVMYNGHTGRKVNAQIFLGPTYYQRLKHMVDDKIHSR 1030

Query: 997  STGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLC 1056
            + G +  + RQP++GR R GG+RFGEMERD  ++HGAA  L +RL   SD + A +C+LC
Sbjct: 1031 ARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRAHICNLC 1090

Query: 1057 GSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAA 1116
            G +  A   +                      C  C+    +  + +PY  + L  EL +
Sbjct: 1091 GLLAIANLRN------------------NTFECKGCRNKTQISQIRLPYACKLLFQELMS 1132

Query: 1117 MNI 1119
            M+I
Sbjct: 1133 MSI 1135


>gi|68490742|ref|XP_710813.1| hypothetical protein CaO19.13269 [Candida albicans SC5314]
 gi|68490765|ref|XP_710802.1| hypothetical protein CaO19.5847 [Candida albicans SC5314]
 gi|46432047|gb|EAK91554.1| hypothetical protein CaO19.5847 [Candida albicans SC5314]
 gi|46432059|gb|EAK91565.1| hypothetical protein CaO19.13269 [Candida albicans SC5314]
 gi|238879996|gb|EEQ43634.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Candida albicans
            WO-1]
          Length = 1157

 Score =  333 bits (855), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 197/519 (37%), Positives = 273/519 (52%), Gaps = 61/519 (11%)

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH EI P  +L  VA L PY  HNQSPRN YQC M KQ +G        R D  LY +  
Sbjct: 679  THLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFRRIDTLLYFMVY 738

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
            PQ P+V+T T      D+ P G NA VAV++Y+GYD+EDA++LNK+S+DRG    Q+ + 
Sbjct: 739  PQQPMVKTKTIELIEYDKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCQVVRK 798

Query: 748  ETIDLSDDGNKVDRGQKLFRRNKDAKSL--HSVIDSDGLPYVGQMIHPGEPYCSIY---- 801
             T+ L    N         R +++ K +  H  +  DGL  VG  I  G+ + +      
Sbjct: 799  NTVQLKKYPNHTQDILAGMRVDENNKPIFQHQALGPDGLGEVGSRIFNGQVFANKCVPTN 858

Query: 802  --DKTTNSWRTNSR-----------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNP 848
              D T  + +               KG E  ++D V   M  S N      +  R TR P
Sbjct: 859  SGDSTLGAQQEQRAAESHREAPAFYKGPEPSYIDQVM--MSVSDNDQALIKVLLRQTRRP 916

Query: 849  IIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
             +GDKFSSRHGQKGVC  +    D+PF+  +G+ PD+I+NPH FPSRMT+  ++E ++ K
Sbjct: 917  ELGDKFSSRHGQKGVCGIIVQQEDLPFND-SGISPDIIMNPHGFPSRMTVGKMIELISGK 975

Query: 909  GGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYG 968
             G L+G     T F        G    D SK L+++        GF+Y G ++LYSG+ G
Sbjct: 976  AGVLNGSLEYGTCFG-------GSKLEDMSKILIEK--------GFSYSGKDMLYSGITG 1020

Query: 969  TELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSL 1028
              L   IF GP+YYQ+L+HMV DK   R+ G    +TRQP +GR R GG+R GEMERD +
Sbjct: 1021 ECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCV 1080

Query: 1029 LAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVT 1088
            +A+GA+ LL +RL   SD    DVC+ CG +   ++                        
Sbjct: 1081 IAYGASQLLLERLMISSDAFEVDVCNKCGLMGYNSW------------------------ 1116

Query: 1089 CHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
            C  C++S+ +  + +PY  + L  EL +MNI   L+LGD
Sbjct: 1117 CTTCKSSENVIKMTIPYAAKLLFQELLSMNIAPRLRLGD 1155



 Score = 99.4 bits (246), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 104/446 (23%), Positives = 195/446 (43%), Gaps = 61/446 (13%)

Query: 38  CRQAKISYTGKLMADVEFQYLDAGSPVVRER-FNFGQFPVMLKTRRCHLQGADSQKLVSL 96
           CR   ++Y+  +  DVE+     G  ++R      G+ PVML++ +C L+G     +  +
Sbjct: 117 CRLRDLTYSAPIYVDVEYT---RGRKIIRHNDLEIGRMPVMLRSNKCMLEGMSEATMAQV 173

Query: 97  KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC-VRKD 155
           +E   + GGYF++NG E+V   +++ +Q     ++  +  D ++G    +V      RK 
Sbjct: 174 EECPLDPGGYFVVNGTEKV---ILVQEQLSKNRIIVEA--DEKKGIVQASVTSSTHERKS 228

Query: 156 QSSVTLK--LYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKY 213
           ++ V  K    YL + S+            +P+ I+LKA    +DLEI   L C  D  Y
Sbjct: 229 KTYVITKNDKIYLKHNSISED---------IPIVIILKAAGIVSDLEIL-QLVCGSDSNY 278

Query: 214 KKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ-------PVIDGLQSES 266
           +            +   +   E   L + T+ Q L ++G+  +       P +  LQ E 
Sbjct: 279 Q------------DLFVVNFEEAARLEVFTQQQALYYVGKRVKTIRRAGAPKLSQLQ-EG 325

Query: 267 YYAVAETVIRDYIFVHLNDNNDKFN----LLIFMLQKLFSLVDHTSVSDNPDSLQNQEIL 322
             A+A T+I      HL  ++ +F      +  M +++   + +  + D+ D + N+ + 
Sbjct: 326 IEAIATTII-----AHLTVSDLQFREKALYIATMARRVVMAMHNPKMVDDRDYVGNKRLE 380

Query: 323 LPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSI 382
           L G L+++  ++  + +    K  I   ++   +  +F  L +I        S  I   +
Sbjct: 381 LAGQLMSLLFEDLFKKFNSDFKANIDKVLKKPSRTSEFDALLSINI-----HSNNITMGL 435

Query: 383 ETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKL 441
              + TG  + +      +RAG T    RL+++  +     +   + F   R  S  R L
Sbjct: 436 NRAISTGNWSLKRF--KMERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRKVSGPRAL 491

Query: 442 LPESWGFLCPVHTPDGEPCGLLNHMT 467
            P  +G LC   TP+GE CGL+ ++ 
Sbjct: 492 QPSQFGMLCTADTPEGEACGLVKNLA 517


>gi|344229872|gb|EGV61757.1| beta and beta-prime subunits of DNA dependent RNA-polymerase [Candida
            tenuis ATCC 10573]
          Length = 1165

 Score =  333 bits (855), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 199/520 (38%), Positives = 273/520 (52%), Gaps = 62/520 (11%)

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH E+ P  +L  VA L PY  HNQSPRN YQC M KQ +G        R D  LY +  
Sbjct: 686  THLEVEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQFRRIDTLLYLMVY 745

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
            PQ P+V+T T      D+ P G NA VAV++Y+GYD+EDA++LNK+SVDRG    Q+ + 
Sbjct: 746  PQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKASVDRGFGRCQVLRK 805

Query: 748  ETIDLSDDGNKVDRGQKLFRRNKDAKSL--HSVIDSDGLPYVGQMIHPGEPYCS------ 799
             TI L    N         R +++ + +  HS +  DGL  VG  +  G+ Y +      
Sbjct: 806  NTITLKRYPNHTKDILSGMRVDENNEPIPPHSSLGPDGLGEVGMKLENGQVYVNKCVPTN 865

Query: 800  IYDKTTNSWRTNSR------------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRN 847
              +   N    N +            KG E  +VD V   M  S N      +  R TR 
Sbjct: 866  AGETVLNGPGANEQPAESHRETPAYYKGPEPSYVDQVM--MSVSDNDQALIKVLLRQTRR 923

Query: 848  PIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAA 907
            P +GDKFSSRHGQKGVC  +    D+PF+   G+ PD+I+NPH FPSRMT+  ++E ++ 
Sbjct: 924  PELGDKFSSRHGQKGVCGIIVQQEDLPFND-DGISPDIIMNPHGFPSRMTVGKMIELISG 982

Query: 908  KGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVY 967
            K G L+G     T F           G+D     + ++ E+L   GFNY G ++LYSG+ 
Sbjct: 983  KAGVLNGTLEYGTCFG----------GSD-----LQDMSEILVQNGFNYSGKDMLYSGIT 1027

Query: 968  GTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDS 1027
            G  L   IF GP+YYQ+L+HMV DK   R+ G    +TRQP +GR R GG+R GEMERD 
Sbjct: 1028 GECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDC 1087

Query: 1028 LLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKV 1087
            ++A+GA+ LL +RL   SD    DVC+ CG +    +                       
Sbjct: 1088 VIAYGASQLLLERLMLSSDAFEVDVCNKCGLMGHNNW----------------------- 1124

Query: 1088 TCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
             C +C +S+ +  + +PY  + L  EL +MNI   L+LGD
Sbjct: 1125 -CTSCNSSEHVIKMTIPYAAKLLFQELISMNIAPRLRLGD 1163



 Score =  107 bits (266), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 108/441 (24%), Positives = 194/441 (43%), Gaps = 51/441 (11%)

Query: 38  CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
           CR   ++Y+  +  DVE  Y      +V      G+ P+ML++ +C L G D +K+    
Sbjct: 123 CRLRDLTYSAPIYVDVE--YTRGRKIIVHRDLEIGRMPIMLRSNKCLLDGIDDKKMAKYD 180

Query: 98  EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC-VRKDQ 156
           E   + GGYFI+NG E+V   +++ +Q     ++  +  D ++G    +V      RK +
Sbjct: 181 ECPLDPGGYFIVNGTEKV---ILVQEQLSKNRIIVEA--DEKKGIVQASVTSSTHERKSK 235

Query: 157 SSVTLK--LYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYK 214
           + V  K    YL + S+            +P+ I+LKA   T+DLEI   L C  D  Y+
Sbjct: 236 TYVITKNDKIYLKHNSISED---------VPIVIILKAAGITSDLEIL-QLVCGNDPNYQ 285

Query: 215 KEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ-------PVIDGLQSESY 267
                       +   I   E   L + T+ Q L ++G+  +       P +  LQ E  
Sbjct: 286 ------------DLFAINFEEAAKLEIFTQQQALHYVGKRVKTIRRAGAPKLSQLQ-EGI 332

Query: 268 YAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
            A+A T+I  +I V      +K   +  M +++   +++  + D+ D + N+ + L G L
Sbjct: 333 EAIATTIIA-HITVSDLQFREKALYIAMMTRRVLMTMENPKMVDDRDYVGNKRLELAGQL 391

Query: 328 ITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLK 387
           +++  ++  + +    K  I   ++   +  +F  L +I        S  I   +   + 
Sbjct: 392 MSLLFEDLFKKFNSDFKANIDKILKKPSRASEFDALLSINI-----HSNNITMGMNRAIS 446

Query: 388 TGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPESW 446
           TG  + +      +RAG T    RL+++  +     +   + F   R  S  R L P  +
Sbjct: 447 TGNWSLKRF--KMERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRKVSGPRALQPSQF 502

Query: 447 GFLCPVHTPDGEPCGLLNHMT 467
           G LC   TP+GE CGL+ ++ 
Sbjct: 503 GMLCTSDTPEGEACGLVKNLA 523


>gi|358060336|dbj|GAA93741.1| hypothetical protein E5Q_00387 [Mixia osmundae IAM 14324]
          Length = 1152

 Score =  333 bits (855), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 201/516 (38%), Positives = 272/516 (52%), Gaps = 60/516 (11%)

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH EI P  +L  VA L P+  HNQSPRN YQC M KQ +G        R D  LY +  
Sbjct: 679  THLEIEPFTLLGAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQLARIDTLLYLMVY 738

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
            PQ P+V T T      D+ P G NA+VAV++++GYD+EDA+ILN++SVDRG    Q+++ 
Sbjct: 739  PQRPLVTTKTIELVKYDQLPAGQNAMVAVMSFSGYDIEDALILNRASVDRGFGRCQVFRK 798

Query: 748  ETIDLSDDGNKV-DRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYC---SIYDK 803
             +  +    N   DR       + D    + V D+DGLP VG  +  G+ Y    +  + 
Sbjct: 799  YSTYIKQYPNNTHDRLADPPPPDSDRHRKYKV-DADGLPAVGDRVKEGDIYVNKQTPSNA 857

Query: 804  TTNS---------WR--TNSRKGSESVFVDYVAV-DMKNSKNLPQKANIRFRHTRNPIIG 851
            T NS         WR    + + + +  +D V + DM+N   L     I  R TR P +G
Sbjct: 858  TDNSSTASSMPSHWRDAVMTYRANMNGHIDKVMLSDMENGTQL---VKILMRQTRRPELG 914

Query: 852  DKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGS 911
            DKFSSRHGQKGVC  + P  DMPF+   G+ PD+I+NPH FPSRMT+  +LE ++ K G 
Sbjct: 915  DKFSSRHGQKGVCGLIVPQEDMPFTD-QGICPDIIMNPHGFPSRMTVGKMLELLSGKAGI 973

Query: 912  LHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTEL 971
            L GKF   T F        G    D S++L+          G++Y G + L SG+ G  L
Sbjct: 974  LGGKFEYGTAFG-------GSKAEDMSRALIQ--------AGYSYAGKDYLTSGITGQAL 1018

Query: 972  TCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAH 1031
               +F GP++YQ+L+HMV DK   RS G    +TRQP +GR R GG+R GEMERD L+AH
Sbjct: 1019 ESYVFFGPIFYQKLKHMVIDKMHARSRGPRATLTRQPTEGRSRDGGLRLGEMERDCLIAH 1078

Query: 1032 GAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHA 1091
            GA++LL +RL   SD    DVC  CG +    +                        C  
Sbjct: 1079 GASHLLLERLMLSSDAFEVDVCQSCGFMGYNGW------------------------CAH 1114

Query: 1092 CQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
            C++   +  + +PY  + L  EL AMNI   L L D
Sbjct: 1115 CKSGDKVVKLMLPYASKLLFQELLAMNIAPRLVLED 1150



 Score = 96.7 bits (239), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 106/447 (23%), Positives = 190/447 (42%), Gaps = 54/447 (12%)

Query: 37  HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
            CR   ++Y   +  DV   Y      VV ++   G+ PVML++ +C L   D +++ SL
Sbjct: 113 ECRLRDMTYAAPIYVDV--IYAKGSRNVVSKKQLIGRIPVMLRSNKCVLWDKDPEQMQSL 170

Query: 97  KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
            E   + GGYF++ G E+V   ++  + +    +V +  R   +G           RK +
Sbjct: 171 TECPLDPGGYFVVKGTEKVI--LVQEQLSKNRVLVENDGRGPSKGIIASVTSSTLERKSK 228

Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
           +       Y+   S ++          +P+ I LKAL    D EI   L  C        
Sbjct: 229 T-------YVAEKSKKIVLRHNSLHEDVPIVIALKALGIVGDHEIM--LLVCGT------ 273

Query: 217 KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHF---QPVIDGLQSESYYAVAET 273
                SP + ER  I   +   L + TR Q L+++G      + V  G  +     VAE 
Sbjct: 274 -----SPELRERFAINFEDSTRLGIYTRTQALEYVGHRVKLSKRVAPGGNNFVRRPVAEE 328

Query: 274 VIR---DYIFVHLNDNNDKFN----LLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGH 326
            +      +  H+   N  F      +  M++++ + +   +++D+ D + N+ + L G 
Sbjct: 329 ALELLATLVLAHVPVENLNFRPKAIYMALMIRRVLAAMLDPTMTDDRDYVGNKRLELAGQ 388

Query: 327 LITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETML 386
           L+++  ++  + + R  K  +   ++   +  +F  L    KV+    S Q G+  +  +
Sbjct: 389 LLSLLFEDLFKLFNRDFKTNVDKMLKKPSRTNEFDGL----KVL----SMQTGSITDGFV 440

Query: 387 KTGRLATQTG-LDLQ----QRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRK 440
           +    A  TG   L+    +RAG T    RL+++  +     +   + F   R  S  R 
Sbjct: 441 R----AIATGNWSLKRFRMERAGITHVLSRLSYISALGMMTRIT--SQFEKTRKVSGPRA 494

Query: 441 LLPESWGFLCPVHTPDGEPCGLLNHMT 467
           L    WG LCP  TP+GE CGL+ ++ 
Sbjct: 495 LQASQWGMLCPSDTPEGEACGLVKNLA 521


>gi|403161549|ref|XP_003321874.2| DNA-directed RNA polymerase II subunit RPB2 [Puccinia graminis f. sp.
            tritici CRL 75-36-700-3]
 gi|375171826|gb|EFP77455.2| DNA-directed RNA polymerase II subunit RPB2 [Puccinia graminis f. sp.
            tritici CRL 75-36-700-3]
          Length = 1131

 Score =  333 bits (853), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 296/1128 (26%), Positives = 484/1128 (42%), Gaps = 163/1128 (14%)

Query: 71   FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSM 130
             G+ P+ML++  C L   +   L  L E   + GGYF++NG E+V  +      N+    
Sbjct: 68   IGKVPIMLRSEFCILDKLEDPGLYELNECPFDQGGYFVINGSEKVLIAQERMAANHVYVF 127

Query: 131  VRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLY-----YLLNGSVRLGFWLQGKEYLLP 185
             ++             + +    K  SS+ +K+Y         G   +   L      +P
Sbjct: 128  AKAG-----------PLAVEKGSKTVSSMQVKMYGGHKAEKAGGGATIKTTLPYIRNDIP 176

Query: 186  VGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRL 245
            + +V +AL    D +I  H+  CYD +       +  P + +   I   EV         
Sbjct: 177  IVVVFRALGIIPDKDILEHI--CYD-RNDTAMFEMLKPCLEDSFPIQEQEV--------- 224

Query: 246  QCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLN----DNNDKFNLLIFMLQKLF 301
              L  IG   +    GL  E     AE +++  +  H++        K     +M+ +L 
Sbjct: 225  -ALDFIGR--RGTATGLSREKRLKYAEEILQKEMLPHISMSEGQQGKKAYFFGYMIHRLL 281

Query: 302  SLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFF 361
                     D+ D    + + L G L+    +          +KL +D   +  K  +  
Sbjct: 282  LAALDRRDLDDRDHFGKKRLDLAGPLLAGLFRMLF-------RKLTKDVYRHLQKCVEMQ 334

Query: 362  NLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFF 421
               N+   ++ N    I   ++  L TG    Q    +Q RAG +    R  F   +S  
Sbjct: 335  KPFNLNAAVKSN---TITNGLKYSLATGNWGDQKKA-MQARAGVSQVLNRYTFASTLSHL 390

Query: 422  RAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHM---------TSTCRV 472
            R  +      G +    R+L    WG +CP  TP+G+ CGL+ ++         + +  +
Sbjct: 391  RRCNTPIGRDG-KIAKPRQLHNSHWGMVCPAETPEGQACGLVKNLALMSYISVGSPSAPI 449

Query: 473  ASYYDSRG--NIRDFSKMRTSILRVLI-----GVGMIP-----SLPKLVKSG--PPAV-- 516
              + +  G  ++ +FS   ++  +V +     GV   P     ++ +L + G   P V  
Sbjct: 450  VEFLEEWGMESLDEFSSDMSNGTKVFVNGVWQGVHRAPAELLDTIKRLRRCGDIEPEVSV 509

Query: 517  --------LSVLLDG----RVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS 564
                    L V  DG    R + ++ + ++     H+  L  +      +D + G     
Sbjct: 510  MRDVRERELRVFTDGGRVCRPLFIVENQQLLLKKEHIEWLS-NGCETAEEDQDAGEEAAD 568

Query: 565  LGGAYPGLYLFTSPPKFVRPVRNIS--LPSEESQNIELIGPFEQVFMEIRCPDGGDGGRR 622
             G  +    L           R I   L +EE + + +    E++       + G   + 
Sbjct: 569  DGVPFGWSQLV---------ARGIVEYLDAEEEETVMICMTPEELEQSREYQETGQVPKE 619

Query: 623  NAFPA----------THEEIH----PTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMG 668
            N  PA          +H   H    P  +L + A++ P+ DHNQSPRN YQ  M KQ MG
Sbjct: 620  NYDPAARLKGNTSMYSHTWTHCEIHPAMILGICASIIPFPDHNQSPRNTYQSAMGKQAMG 679

Query: 669  FSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAM 728
              +   + R D     L  PQ P+  T +       E P G NAIVA+L Y+GY+ ED++
Sbjct: 680  VYLTNFRTRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAIVAILCYSGYNQEDSV 739

Query: 729  ILNKSSVDRGMCHGQIYQTETIDLSDDGN-KVDRGQKLFRRN--KDAKSLHSVIDSDGLP 785
            I+N+SS+DRG+     Y++        G  +++  +K  R +  +     +  +D DG+ 
Sbjct: 740  IMNQSSIDRGLFRSFYYRSYMDQEKRAGALQMEEFEKPTRDSTLRLKHGTYDKLDDDGII 799

Query: 786  YVGQ-------MIHPGEPYCSIYDKTTNSWRTNSR-------KGSESVFVDYVAVDMKNS 831
              G        +I    P     ++     +T+++       K +E+  +D V V   N 
Sbjct: 800  TPGTRVSGDDIIIGKTAPIPKDSEELGQRMKTHTKRDVSMPLKSTENGIIDQVLV-TTNQ 858

Query: 832  KNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHA 891
              L +   +R R TR P  GDKF+SRHGQKG    L+   DMPF+   G+ PD+IINPHA
Sbjct: 859  DGL-KFVKVRIRSTRIPETGDKFASRHGQKGTVGILYRQEDMPFTS-EGVCPDIIINPHA 916

Query: 892  FPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRT 951
             PSRMTI  L+E + +K  ++ G   DATPF               S+  V+ +  +L+ 
Sbjct: 917  IPSRMTIGHLVECLLSKVSTITGNEGDATPF---------------SEVTVEAISALLKD 961

Query: 952  CGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKG 1011
             G+   G+E++++G  G +L  + ++GP YYQRL+HMV+DK   R+ G +  +TRQP++G
Sbjct: 962  KGYQSRGLEIMFNGHTGKKLRAQCYLGPTYYQRLKHMVNDKIHSRARGPVQILTRQPVEG 1021

Query: 1012 RKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRA 1071
            R R GG+RFGEMERD +++HG A  L +R+   SD +   VC  CG V  A         
Sbjct: 1022 RSRDGGLRFGEMERDCMISHGIAGFLKERMFDVSDAYRVHVCDFCGMVAIANL------- 1074

Query: 1072 IREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
                         +   C +C+    +  V +PY  + L  EL +MNI
Sbjct: 1075 -----------KKQSFECRSCRNKTAISQVYIPYAAKLLFQELQSMNI 1111


>gi|146414794|ref|XP_001483367.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Meyerozyma
            guilliermondii ATCC 6260]
          Length = 1156

 Score =  332 bits (852), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 193/521 (37%), Positives = 273/521 (52%), Gaps = 63/521 (12%)

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH EI P  +L  VA L PY  HNQSPRN YQC M KQ +G        R D  LY +  
Sbjct: 676  THLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFRRIDTLLYLMVY 735

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
            PQ P+V+T T      D+ P G NA VAV++Y+GYD+EDA++LNK+S+DRG    Q+ + 
Sbjct: 736  PQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKASIDRGFGRCQVLRK 795

Query: 748  ETIDLSDDGNKVDRGQKLFRRNKDAKSL--HSVIDSDGLPYVGQMIHPGEPY---CSIYD 802
             T++L    N         R ++  + +  H+ +  DGL  VG  +  G+ Y   C   +
Sbjct: 796  NTVNLKRYPNHTKDVVSGMRVDEQGEPIFPHASLGPDGLGEVGMKVENGQVYVNKCVPTN 855

Query: 803  KTTNSWRTNS----------------RKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTR 846
             + +    N                  +G E  ++D V   M  S N      +  R TR
Sbjct: 856  ASESVLGANEPHHQQNVESHRETPAYYRGPEPSYIDQVM--MSVSDNDQTLIKVLLRQTR 913

Query: 847  NPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVA 906
             P +GDKFSSRHGQKGVC  +    D+PF+   G+ PD+I+NPH FPSRMT+  ++E ++
Sbjct: 914  RPELGDKFSSRHGQKGVCGIIVQQEDLPFND-DGIVPDIIMNPHGFPSRMTVGKMIELIS 972

Query: 907  AKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGV 966
             K G L+G     T F  S                ++++ E+L   GFNY G ++LYSG+
Sbjct: 973  GKAGVLNGSLEYGTCFGGSK---------------LEDMSEILVKNGFNYSGKDMLYSGI 1017

Query: 967  YGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERD 1026
             G  L   IF GP+YYQ+L+HMV DK   R+ G    +TRQP +GR R GG+R GEMERD
Sbjct: 1018 TGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERD 1077

Query: 1027 SLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKK 1086
             ++A+GA+ LL +RL   SD    DVC+ CG +   ++                      
Sbjct: 1078 CVIAYGASQLLLERLMLSSDAFEVDVCNNCGLMGYNSW---------------------- 1115

Query: 1087 VTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
              C +C++S+ +  + +PY  + L  EL +MNI   L+L D
Sbjct: 1116 --CTSCKSSENVIKMTIPYAAKLLFQELLSMNIAPRLKLDD 1154



 Score =  104 bits (260), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 105/446 (23%), Positives = 198/446 (44%), Gaps = 47/446 (10%)

Query: 38  CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
           CR   ++Y+  +  DVE  Y      ++ +    G+ P+MLK+ +C L G +  ++  L 
Sbjct: 115 CRLRDLTYSAPIYVDVE--YTRGRKIIMHKDLEIGRMPIMLKSNKCILDGINDHQMAKLD 172

Query: 98  EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC-VRKDQ 156
           E   + GGYFI+NG E+V   +++ +Q     ++  +  D ++G    +V      RK +
Sbjct: 173 ECPIDPGGYFIVNGTEKV---ILIQEQLSKNRIIVEA--DEKKGIVQASVTSSTHERKSK 227

Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
           + V  K     N  + L     G++  +P+ I+LKA   T+DLEI   L C  + +Y+  
Sbjct: 228 TYVITK-----NEKIYLKHNSIGED--VPIVIILKAAGITSDLEIL-QLVCGSNPQYQ-- 277

Query: 217 KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ-------PVIDGLQSESYYA 269
                     +   +   E   L + T+ Q L ++G+  +       P +  LQ E   A
Sbjct: 278 ----------DLFAVNFEEAARLEVFTQQQALNYVGKRVKTVRRAGAPKLSQLQ-EGIEA 326

Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
           +A T+I  +I V      +K   +  M +++   + +  + D+ D + N+ + L G L++
Sbjct: 327 IATTIIA-HITVDDLQFREKALYIAMMARRVLMTMHNPKMVDDRDYVGNKRLELAGQLMS 385

Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
           +  ++  + +    K  I   ++   +  +F  L +I        S  I   +   + TG
Sbjct: 386 LLFEDLFKKFNSDFKANIDKILKKPSRALEFDALLSINI-----HSNNITMGMNRAISTG 440

Query: 390 RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPESWGF 448
             + +      +RAG T    RL+++  +     +   + F   R  S  R L P  +G 
Sbjct: 441 NWSLKRF--KMERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRKVSGPRALQPSQFGM 496

Query: 449 LCPVHTPDGEPCGLLNHMTSTCRVAS 474
           LC   TP+GE CGL+ ++     + +
Sbjct: 497 LCTSDTPEGEACGLVKNLALMTHITT 522


>gi|109287887|ref|YP_654581.1| hypothetical protein MIV009R [Invertebrate iridescent virus 3]
 gi|123868018|sp|Q197F1.1|RPB2_IIV3 RecName: Full=Probable DNA-directed RNA polymerase II subunit RPB2
            homolog
 gi|106073510|gb|ABF82039.1| hypothetical protein MIV009R [Aedes taeniorhynchus iridescent virus]
          Length = 1140

 Score =  332 bits (852), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 325/1229 (26%), Positives = 515/1229 (41%), Gaps = 216/1229 (17%)

Query: 4    KKSADFEPLRELVRHHIESFDYMLDEGLSEMFDH-------------------------- 37
            K  AD+     LV+H IE+F++ + +GL  + ++                          
Sbjct: 21   KIVADYFKTNGLVKHQIETFNHFISKGLKTIINNESSIKYQSHDNYSLKFTNIYVEYPSI 80

Query: 38   --------------CRQAKISYTGKLMADV--EFQYLDAGSPVVRERFN--FGQFPVMLK 79
                           R   +SYTG +  +V    +  +   P + E++     + P+ML 
Sbjct: 81   IDDDRTIRDLYPQEARNKDLSYTGNVCVNVIEMVENKEGKPPQISEQYRVPIAKIPIMLG 140

Query: 80   TRRCHLQGADSQKLVSLKEEA------AEMGGYFILNGLERVFRSVILPKQNYPMSMVRS 133
            +  CHL      K   L+ E       A+ GGYFI+NG ERV  S +    N P+  V+S
Sbjct: 141  SDVCHLS-----KYTPLENEQINGHSQADQGGYFIINGKERVLISQVRKAYNKPVCFVKS 195

Query: 134  SFRDRREGYTDKAVVIRCVRKD-------QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPV 186
            +        + K  V+ C  +         +SV +K+   +   + +   L+ K   +PV
Sbjct: 196  T--------SQKEDVLICEMRSMCEETFHSTSVQVKM---IKNKIMVSLKLKRKLIDIPV 244

Query: 187  GIVLKALVDTNDL------EIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQD-- 238
            GIV K L    D        +FN        +Y+K   A+ +  + E    I     D  
Sbjct: 245  GIVFKCLGYNPDQMGSKFRSLFN-----LPPEYEKYIDAIKNDCLEEFAYGIAVSAADGD 299

Query: 239  -------LSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDY-------IFVHL- 283
                             +HI + F+ +   +  +   A     I D        +F HL 
Sbjct: 300  NSDSGGESGGEEEADQEEHIVKVFRNMSTSVDKDGGMAATGITIEDVQKSLDMDLFPHLG 359

Query: 284  --NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLR 341
              +    + +LL FM++K    +      DN D   ++ +   G L +   +       +
Sbjct: 360  ITSTRKQRVDLLAFMVKKYLLTLTRKIPVDNRDDYNHKRVETAGELYSFLFRL----LYK 415

Query: 342  KGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQ 401
            K +K    +I N  +K D  N            +  I T I     +G    Q    ++ 
Sbjct: 416  KFQKTCITQIRN--RKPDISNFLR---------TSGITTGILYSFSSGYWGVQRNTYIRT 464

Query: 402  RAGYTVQAERLNFLRFISFFRAVHRGASFAG--LRTTSVRKLLPESWGFLCPVHTPDGEP 459
                 V   +++ L   S  R V    S  G   +T+ +R++ P S   +CPV TP+G+ 
Sbjct: 465  GVSQVVNP-KVSLLANYSSLRRVVIPESKDGKEAKTSEIRQIHPSSSFLVCPVETPEGKG 523

Query: 460  CGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSV 519
             G + +M   C+V +   +             I+  +   G+       +K  P   L +
Sbjct: 524  VGTVLNMAVFCQVTTGIST-----------CEIMDQIDSFGVDLKCHCTIKD-PNNCLLL 571

Query: 520  LLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPP 579
            L++G   G    +    V+  L  L  +  S++        V  +LG     + +F+   
Sbjct: 572  LINGSPYG----NGHANVIHRLNFLNDTNISIV--------VNRALGV----IEIFSDAG 615

Query: 580  KFVRPVRNIS---------LPS----EESQNIELIGPFE----QVFMEIRCPDGGDGGRR 622
            +F+RP+ ++          +PS     ++Q I  I   E     + +E+R        R 
Sbjct: 616  RFIRPIFDLDKICNFEGEIVPSFKWFLDNQLIRYIDINEAAANSIAIELRDLSTNPNTRY 675

Query: 623  NAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKL 682
            N       E+ P GM  +VA + P+ D  QS RN +   M KQ +GF V     + +   
Sbjct: 676  NLM-----ELDPCGMFGIVAGIIPFPDRTQSARNCFYSSMVKQAIGF-VPCHNLKTETVS 729

Query: 683  YHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG 742
            + L  PQ P+V T+      ++EYP G NAIVA+  YTGY+ ED++ILNKSS+DRG+   
Sbjct: 730  HTLNYPQKPLVTTSFAEYNQLNEYPNGINAIVAIACYTGYNQEDSIILNKSSIDRGLFGT 789

Query: 743  QIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPY-CSIY 801
              Y T T     +G   +R +      K     + ++  DG+  + Q +  G+   C + 
Sbjct: 790  ITYNTFTAQEKKNGIIEERIEIPSNAIKIRDCNYGLVGPDGIVRLRQRVKKGDVLICKVT 849

Query: 802  DKTTNSWRTNSRKGSESVFVD-----YVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSS 856
             K  N    + +    SV V      YV   + N  +  +   +     R P IGDKF S
Sbjct: 850  IKNKNQ---DEKLVDSSVIVQHGEEGYVDRIVDNVIDGCRIVKVVIGQMRTPEIGDKFCS 906

Query: 857  RHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKF 916
               QKG C  ++P  DMPF+  +GM PD+IINP+  PSRMTI  ++ +V        GK 
Sbjct: 907  GMAQKGTCGMIFPQEDMPFTA-SGMTPDIIINPNCIPSRMTINQIISTVM-------GKL 958

Query: 917  MDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIF 976
                P   + +  NG++  + S +++ EL   L+  GF+  G EV+YSG  G  +   IF
Sbjct: 959  YTVNP---NPRFRNGNSFQENSNTILKELCHHLKLNGFDPSGSEVMYSGFTGERIQSTIF 1015

Query: 977  IGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYL 1036
            +GP YY RL+HMV DK   RS G +  + RQP  GR +GGG+RFGEME+D +L HGA   
Sbjct: 1016 MGPTYYHRLKHMVKDKMHARSHGQVTTLHRQPNCGRSQGGGLRFGEMEKDCILVHGATQF 1075

Query: 1037 LHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSK 1096
            L++R+   SD    DVC  CG + + +                     KK  CH C  S 
Sbjct: 1076 LNERMFLNSDPFQIDVCKDCGMMSSTS---------------------KK--CHHC-GSI 1111

Query: 1097 GMETVAMPYVFRYLAAELAAMNIKITLQL 1125
             ++   +PY  + L  EL  M IK  + L
Sbjct: 1112 NVKRCNIPYSCKNLLQELNGMGIKTKIDL 1140


>gi|323449030|gb|EGB04921.1| hypothetical protein AURANDRAFT_38738 [Aureococcus anophagefferens]
          Length = 1147

 Score =  332 bits (851), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 298/1060 (28%), Positives = 464/1060 (43%), Gaps = 153/1060 (14%)

Query: 71   FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSM 130
             G  P+ML++R C L     ++L  L E   + GGYF++NG E+V    ++ ++    + 
Sbjct: 102  LGYVPIMLRSRFCVLADKSDKELCELGECIYDQGGYFVINGSEKV----VVAQERMSNNH 157

Query: 131  VRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKE------YL- 183
            V   FR ++       V  R   +  +  T  +Y  +      G   QG +      Y+ 
Sbjct: 158  V-YCFRKKQPHKYSWVVECRSHVEHGARPTSTIYMQMYNKAGRG-QSQGNQIRMTLPYIR 215

Query: 184  --LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSL 241
              +PV IV +AL    D +I  H+   + +    E+     P + E   ++  +   L  
Sbjct: 216  VDVPVIIVFRALGFVADRDILEHVVYDFSDTEMMEQL---RPSLDEAF-VVQNQTIALDF 271

Query: 242  TTRLQCLQHIG--EHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQK 299
              R     +IG  +  Q   + LQ E         +  ++      +  K   + +++ K
Sbjct: 272  IGRRGSATNIGRSKRVQYAKELLQKE---------VLPHVGTEEQSDTKKAFFVGYIVHK 322

Query: 300  LFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFD 359
            L          D+ D    + + L G L+    +          +KL +D +    K  D
Sbjct: 323  LLMCSLERIDEDDRDHYGKKRLDLAGPLLGGLFRMLF-------RKLTKDVLAYLQKCID 375

Query: 360  F---FNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLR 416
                FNLA+  K      S+ I   +   L TG    +       RAG +    RL +  
Sbjct: 376  EGRDFNLASAIK------SRVITDGLRYSLATGNWGDRKD---ASRAGVSQVLNRLTYAS 426

Query: 417  FISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYY 476
             +S  R ++      G +    R+L    WGF+CP  TP+G+  GL+ ++     V+   
Sbjct: 427  TLSHLRRLNTPLGREG-KQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLALMSYVS--- 482

Query: 477  DSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGP-----PAVLSVLLDGRVVGV-IP 530
                        ++ IL  L       S+  L +  P     P    + ++G  VGV   
Sbjct: 483  --------VGSPQSPILEFLEEW----SMENLEEISPQTIADPGTTKIFVNGSWVGVHRD 530

Query: 531  SSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISL 590
             S +E  +  LRR        I  D EV  V          L ++T   +  RP+  IS 
Sbjct: 531  PSTLESTLRSLRRQ-------IDIDPEVSVV---RDIKEKELRIYTDAGRVCRPLLIISK 580

Query: 591  PSEESQN------------------------IELIG-PFEQVFMEIRCPDGGDGGRRNAF 625
             S +                           +EL+    E+  M    P   D     + 
Sbjct: 581  FSRQELRLRKSHIQKLVNGELGWTQLLVKGLVELVDTEEEETTMIAMVP--SDLNETYSS 638

Query: 626  PATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHL 685
              TH EIHP+ +L +  ++ P+ DHNQSPRN YQ  M KQ MG      + R D   + L
Sbjct: 639  TYTHCEIHPSMILGICGSIIPFPDHNQSPRNTYQSAMGKQAMGIYASNFQQRMDTLSHVL 698

Query: 686  QTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIY 745
              PQ P+  T         E P+G NAIVA++ YTGY+ ED++I+N++++DRG+     Y
Sbjct: 699  HYPQKPLATTRAMEHLHFRELPSGVNAIVAIMCYTGYNQEDSLIMNQAAIDRGLFRSTFY 758

Query: 746  QTETIDLSDDGNKVDRGQKLFRRNKDAKSL-----HSVIDSDGLPYVGQMIH-------- 792
            +T     S  G      +   R  +D  +      +  +D DGL   G  +         
Sbjct: 759  RTYVDQESIRGLGEAFHETFERPTRDQCTAMRHGSYDKVDCDGLVAPGLRVSGADILIGK 818

Query: 793  --PGEP--------YCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRF 842
              P  P        +C    + +++    + + +ES  VD V +   N + + +   +R 
Sbjct: 819  TAPTTPLGMDGNLNHCQFTKQDSST----AMRPNESGLVDQVMLS-TNQEGM-KFTKVRT 872

Query: 843  RHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLL 902
            R  R P IGDKF+SRHGQKG     +   DMP++   G+ PD+++NPHA PSRMTI  L+
Sbjct: 873  RTIRIPQIGDKFASRHGQKGTIGMTYSQEDMPWTR-DGVSPDIVVNPHAIPSRMTIGHLV 931

Query: 903  ESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVL 962
            E + +K G+L GK  DATPF            TD S   VD++  +L   G++ HG EV+
Sbjct: 932  ECLQSKVGALTGKEGDATPF------------TDVS---VDQIAGVLHELGYHRHGNEVM 976

Query: 963  YSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGE 1022
            YSG  G  +  ++F+GP +YQRL+H+V DK   RS G +  +TRQP++GR R GG+R GE
Sbjct: 977  YSGHTGRMIHAKVFLGPTFYQRLKHLVDDKIHARSRGPVTMLTRQPMEGRARDGGLRMGE 1036

Query: 1023 MERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTA 1062
            MERD L++HG +  L DR+   SD +   VC+ CG +  A
Sbjct: 1037 MERDCLVSHGVSSFLRDRMFANSDPYAVHVCTSCGMIAHA 1076


>gi|224003383|ref|XP_002291363.1| DNA directed RNA polymerase II, second largest subunit [Thalassiosira
            pseudonana CCMP1335]
 gi|220973139|gb|EED91470.1| DNA directed RNA polymerase II, second largest subunit [Thalassiosira
            pseudonana CCMP1335]
          Length = 1196

 Score =  332 bits (851), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 312/1175 (26%), Positives = 491/1175 (41%), Gaps = 176/1175 (14%)

Query: 28   DEGLSEMFDH-CRQAKISYTGKLMADVEFQYL-------------DAGSPV----VRERF 69
            D  ++ MF H  R   ++Y   L  DV                  D G PV     R+ F
Sbjct: 99   DGTVTNMFPHEARLRNLTYAAPLYVDVTMNEYRVGNDVNVGDPAEDMGEPVSTEEARKEF 158

Query: 70   NFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMS 129
              G  P+ML++  C L   D  +L  L E   + GGYF++NG E+V    I+ ++    +
Sbjct: 159  -LGYVPIMLRSLFCVLSDKDDAQLADLGECIYDQGGYFVINGSEKV----IVAQERMSNN 213

Query: 130  MVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLL-----NGSVRLGFWLQGKEYL- 183
             V  +F+ ++       +  R   ++ +  T  LY  +      G++          Y+ 
Sbjct: 214  HV-YAFKKKQPSKFSWVIETRSQVENSTRPTSTLYIQMYQKGGKGAIEGNQIRSTLPYIR 272

Query: 184  --LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSL 241
              +PV I+ +AL    D +I  H+   YD     E   +  P + E   I   EV     
Sbjct: 273  TDIPVVIIFRALGYVADRDIIEHVV--YDLT-DGEMMDLFRPSLEEAFVIQKQEV----- 324

Query: 242  TTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDN----NDKFNLLIFML 297
                  L  IG   +     +  +     A  +++  +  H+         K   L + +
Sbjct: 325  -----ALDFIGR--RGSARDVTKDDRIRYAAGILQKEVLPHVGTEEHCETKKGFFLGYAV 377

Query: 298  QKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLK---EKLEDWLRKGKKLIQDEIENN 354
             KL       +  D+ D    + + L G L+    +    KL   +RK  +   DE    
Sbjct: 378  HKLLMCKLGRADEDDRDHFGKKRLDLAGPLLGGLFRVLFRKLTKDVRKHLQRCLDE---- 433

Query: 355  GKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNF 414
            GK F      NI   ++ N    I   ++  L TG    +       +AG +    RL +
Sbjct: 434  GKHF------NIGAAIKSN---HISDGLKYSLATGNWGDKGN---TSKAGVSQVLNRLTY 481

Query: 415  LRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVAS 474
               +S  R  +   +  G +    R+L    WG +CP  TP+G+  GL+ +M     + +
Sbjct: 482  ASSLSHLRRSNTPLARTG-KQAKPRQLHNSHWGMVCPAETPEGQAVGLVKNMALMAYITT 540

Query: 475  YYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEI 534
                   +    +  T  L  +        LP ++    P    + ++G  VG+    + 
Sbjct: 541  GTSQVPVMEFLEEFSTENLTDI--------LPSVI--AEPNTCKIFVNGNWVGI--HRDP 588

Query: 535  EKVVAHLRRLKVSAASVIPDDLEVGYV---PLSLGGAYPGLYLFTSPPKFVRPV-----R 586
            +++V   R L+     +I  D EV  V   P S       + ++T   +  RP+     +
Sbjct: 589  KQLVHTFRSLR----RMIDIDAEVSIVRDIPES------EVRIYTDAGRICRPLFIVTDQ 638

Query: 587  NISLPSEESQNIELIGP----------------------FEQVFMEIRCPDGGDG--GRR 622
             +++       ++ + P                       E+  M    P   D   G  
Sbjct: 639  ELAIKKHHISQLQGVSPDQKKLTWTDLLMEGLVEYVDTEEEETTMIAMEPKDLDMTVGEP 698

Query: 623  NAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKL 682
             +   TH EIHP+ +L + A++ P+ DHNQSPRN YQ  M KQ MG      + R D   
Sbjct: 699  YSTTYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQVRMDTMA 758

Query: 683  YHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG 742
            + L  PQ P+  T         E P+G N +VA++ YTGY+ ED++I+N+S++DRG+   
Sbjct: 759  HVLHYPQKPLCTTRAMEFLHFRELPSGVNVVVAIMIYTGYNQEDSLIMNQSAIDRGLFRS 818

Query: 743  QIYQ--TETIDLSDDGNKVDRGQKLFRRN--KDAKSL----HSVIDSDGLPYVGQMIH-- 792
              Y+   +    S  G+      + F R    + K +    +  +D DGL   G  +   
Sbjct: 819  SYYRCYNDQEKSSSVGSVGALNSEFFERPAFDNCKGMKTGDYGKLDDDGLVSPGTRVSGD 878

Query: 793  --------PGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRH 844
                    P +   +   + T    + S K +E+  VD V +    +K   +   +R R+
Sbjct: 879  DVLIGKTAPMDAIANTPSRYTKRDCSTSMKANENGIVDNVLI--STTKEGYRFTKVRIRN 936

Query: 845  TRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLES 904
             R P +GDKF+SRHGQKG     +   DMPF+   G+ PD+I+NPHA PSRMTIA L+E 
Sbjct: 937  VRIPQVGDKFASRHGQKGTIGMTYRQEDMPFT-CEGIVPDIIVNPHAIPSRMTIAQLIEC 995

Query: 905  VAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYS 964
            +  K     G   DATPF +                 VD++ + L   G+  HG E +Y 
Sbjct: 996  ILGKVAVFQGCEGDATPFTDV---------------HVDDISKRLHAMGYQRHGNEAMYQ 1040

Query: 965  GVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEME 1024
            G  G  L   +FIGP +YQRL+H+V DK   R+ G +  +TRQP++GR R GG+R GEME
Sbjct: 1041 GHTGRPLNARVFIGPTFYQRLKHLVDDKVHSRARGPVAMLTRQPLEGRARDGGLRMGEME 1100

Query: 1025 RDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP 1084
            RD L+ HG A  + DR    SD +   +C  CG    +      K+   E         P
Sbjct: 1101 RDCLITHGCANFIRDRFFCNSDQYRIHICERCGLTAQSNL----KKMTYECRTPTCVGLP 1156

Query: 1085 KKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
             K+    CQ       V +PY  + L  EL +M I
Sbjct: 1157 YKI----CQ-------VEIPYACKLLFQELQSMCI 1180


>gi|253741841|gb|EES98701.1| DNA-directed RNA polymerase subunit B' [Giardia intestinalis ATCC
            50581]
          Length = 1239

 Score =  332 bits (851), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 272/877 (31%), Positives = 414/877 (47%), Gaps = 139/877 (15%)

Query: 311  DNPDSLQNQEILLPGHLITIYLKEKLEDWL----RKGKKLIQDEIENNGKKFDFFNLANI 366
            D+ D + N++I   G L+ +   +  +  L    RK   +++ + +N G      +L N 
Sbjct: 440  DSKDFVGNKKIETAGDLLELIFDDAFKTLLAHMARKVDVILRSD-KNRGT-----DLTNY 493

Query: 367  KKVMEKNPSKQIGTSIETMLKTGRLATQ-TGLDLQQRAGYTVQAERLNFLRFISFFRAVH 425
              V   +PS  I  +  + + TG    +  G+D   R G +   + L+ L +IS    V 
Sbjct: 494  DVVSLVDPSI-ITRAFNSAISTGNWKIERIGVD---RVGVS---QVLSRLSYISTLGQVT 546

Query: 426  RGASF--AGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIR 483
            R +S     ++++  R L     G  CP  TP+GE  G++ +++   R++         +
Sbjct: 547  RLSSTFDKAMKSSGPRMLNFSQMGIFCPSDTPEGESVGIVKNLSIMARIS---------K 597

Query: 484  DFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVA 539
            D +    S L + IGV  + S      SG    L     V L+G + GVI    ++  + 
Sbjct: 598  DENADSISKLLMSIGVEDLAS----CWSGDTFSLGYGYMVFLNGTIKGVIAKDMLKGFII 653

Query: 540  HLRRLKVSAASVIPDDLEVGYVP----LSLGGAYPGLYLFTSPPKFVRP---VRNISLPS 592
             LR  +             GY+           +  +Y+     +  RP   V N  L  
Sbjct: 654  TLRTFR-----------RKGYISYLTSFHFNDEHQAVYINCDSGRACRPLLIVENGKL-K 701

Query: 593  EESQNIELIGPFEQVFME------IRCPDGGDGGRRNAFPA----------THEEIHPTG 636
                +IEL+   ++ F++      +   D  +   +NA+ A          TH EI    
Sbjct: 702  LTLNDIELLVNNQKCFVDFIYEGKVEYLDVNEA--KNAYIAMDTKDLTPQHTHCEIESYT 759

Query: 637  MLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKF----RADQKLYHLQTPQTPI 692
            +L  V  L PY  HNQSPRN YQC M KQ  G    A+ F    R +  ++ L  PQ P+
Sbjct: 760  LLGYVVGLIPYPHHNQSPRNCYQCSMGKQASG----AIAFNQFERFETAMFLLDYPQRPL 815

Query: 693  VRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDL 752
              T      G +  P G NA V V++Y+ +D+EDA+ILN+S++DRG     IY++ + +L
Sbjct: 816  TSTKILKLTGYERLPAGQNATVCVMSYSSFDIEDALILNRSAIDRGFGRCSIYRSVSAEL 875

Query: 753  SDDGNKVDRGQK--LFRRNKDA----KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN 806
            +  G+K   G K  L    KD     +S H+V D DGL  VG  +  G+   +     TN
Sbjct: 876  NSTGSKSVDGTKDVLLGPPKDHLKQYESYHAVED-DGLCAVGAHLKTGDIVINKGRHVTN 934

Query: 807  -SWRTNSRKGSESV---------------FVDYVAVDMKNSKNLPQKANIRFRHTRNPII 850
                ++  + +E++               ++D V V   N  NL  K  +  R  R P +
Sbjct: 935  IPGLSDGPEAAETLIKSPESLKSPLETITYIDKVLVTTNNDGNLLIK--VLTREPRRPEV 992

Query: 851  GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGG 910
            GDKFSSRHGQKGVC  +    D+PF+   G+ PDLI+NPH +PSRMT+A LLE ++ K  
Sbjct: 993  GDKFSSRHGQKGVCGLIVSQSDLPFTS-QGIVPDLIMNPHGYPSRMTVAKLLELLSNKSS 1051

Query: 911  SLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTE 970
               G+  D T F          T TDE    + EL + LR  GF+Y G +VLYSG+ G  
Sbjct: 1052 CFRGEQTDGTCFR---------TKTDEE--FIAELYDSLRAAGFSYSGKDVLYSGLTGDV 1100

Query: 971  LTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLA 1030
            +   IF GP+YYQ+L+HMV DK   R TG +  +TRQP +GR+  GG+R GEMERD  ++
Sbjct: 1101 IPVYIFNGPIYYQKLKHMVKDKIHSRGTGPITMLTRQPTEGRRVHGGLRMGEMERDCAIS 1160

Query: 1031 HGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCH 1090
            +GA+ LL +R    SD  +A VC  CG      F + +  A+                C 
Sbjct: 1161 YGASALLLERFMLSSDEFLAYVCEACG-----LFSYERNGALW---------------CP 1200

Query: 1091 ACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
             CQ+ K +  + +PY  + +  EL +M + + +QL D
Sbjct: 1201 TCQSGKDVVKIRIPYAAKLMIQELISMGVLVRMQLED 1237



 Score = 49.7 bits (117), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 38/170 (22%), Positives = 72/170 (42%), Gaps = 17/170 (10%)

Query: 37  HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
            CRQ  ++Y   +  DV  +  +  S    +    G  P+ML++ RC L     ++    
Sbjct: 102 ECRQRNMTYAAPITIDVRCRASNKSSVQYYKDICIGYIPIMLRSNRCILANKSRKQQAFF 161

Query: 97  KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
           +E   + GGYFI+ G E   +S++L +Q   ++M R       +G  +  V      +  
Sbjct: 162 QECPDDPGGYFIVRGAE---KSILLAEQ---ITMNRIVLGRNTDGNIEVTVASNTTERKS 215

Query: 157 SSVTL---KLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFN 203
               L   K +YL++            +  +P+  + KA+   ND+ + +
Sbjct: 216 RCAVLYKNKKFYLIHNKF--------NKKPIPIVTIFKAMGFVNDVTVLS 257


>gi|242074526|ref|XP_002447199.1| hypothetical protein SORBIDRAFT_06g030300 [Sorghum bicolor]
 gi|241938382|gb|EES11527.1| hypothetical protein SORBIDRAFT_06g030300 [Sorghum bicolor]
          Length = 1239

 Score =  332 bits (850), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 312/1165 (26%), Positives = 508/1165 (43%), Gaps = 204/1165 (17%)

Query: 37   HCRQAKISYTGKLMADVEFQYLD--------AGSPVVRERFNF---------GQFPVMLK 79
            H R   ++Y  +L  +V  Q            G+    ++ NF         G  PVM+K
Sbjct: 188  HARLQNMTYASRLKVEVTIQVYSLEKSDKSKTGNEGFVQKRNFMNETHWIFIGLLPVMVK 247

Query: 80   TRRCHLQGADSQKLVSLKEEAA--EMGGYFILNGLERVF--------RSVILPKQNYPMS 129
            +  C L         SLKE     + GGYF++ G+E+VF        + + +  + + M 
Sbjct: 248  SNLCLLH--------SLKESECLFDAGGYFLVKGMEKVFIAQEQRCLKRLWVSDRPFWMI 299

Query: 130  MVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGS--VRLGFWLQGKEYLLPVG 187
                  + RR       + I+ V   +S          +GS  + + F        +PV 
Sbjct: 300  SFMHEIKRRR-------IYIKLVESTRSED-------FSGSKVISISFLYA----TMPVW 341

Query: 188  IVLKALVDTNDLEIFN--HLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRL 245
            ++  AL  ++D E F+   +  C                V   +   + E  +L    R 
Sbjct: 342  LLFFALGISSDKEAFDVIDMQDC-------------DASVINTISATIKESDELCKGFRK 388

Query: 246  QCLQHIGEHFQPVIDGLQSESYYAVAETV---IRDYIFVHLNDNNDKFNLLIFMLQKLFS 302
                   +  +  +D L   S +  AE+    +  ++F  +N N +K   L +M++ L  
Sbjct: 389  S------DKARQYVDELVKSSRFPPAESFDDYVARFLFPDINGNRNKAFFLGYMVKCLLM 442

Query: 303  LVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFN 362
                    DN D  +N+ + LPG L+   L+ +L    R+  K IQ ++ N+ +  D   
Sbjct: 443  AFTGKRKCDNKDDFRNKRLDLPGELLGRELRAQLRLLERRMVKAIQRDLNNDRELQDL-- 500

Query: 363  LANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRA----GYTVQAERLNFLRFI 418
                         + I  SI T       +T +     +RA    G      R N L+ +
Sbjct: 501  ------------ERYIDASIVTNGLNRAFSTGSWCHPYKRAERCSGIVATLRRTNPLQMM 548

Query: 419  SFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDS 478
            S  R   +  ++AG +    R   P  WG LC + TPDGE CGL+ ++  T  V+S    
Sbjct: 549  SDLRKTRQRVAYAG-KAGDARYPNPSYWGKLCFLSTPDGENCGLVKNLAVTAIVSS---- 603

Query: 479  RGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVV 538
                    ++   ++   I  GM   L  +       +  + L+G  VG    S     V
Sbjct: 604  --------RVGQPLIESFISCGM-SKLNDIPTEHIQRMDKIFLNGNWVGSCKDSA--SFV 652

Query: 539  AHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------------- 585
              LR ++ S  S+I   +E+          +  + +F+   + +RP+             
Sbjct: 653  FRLRCMRRS--SMIDPQVEI-----KRDKHHKEVRVFSDAGRILRPLLVVENLNKIRKPK 705

Query: 586  -RNISLPSEESQNI-ELIGPFEQVFMEIRCPDGGDGGRRNAFPA-------THEEIHPTG 636
             R+ S      Q I E IG  E+   +I+C      G R+ F +       TH E+ P+ 
Sbjct: 706  GRSFSFQELMQQEIIEFIGVEEE--EDIQCA----WGIRHLFESEGAISSYTHCELDPSF 759

Query: 637  MLSVVANLTPYSDHNQSPRNMYQCQM-AKQTMGFSVQALKFRADQKLYHLQTPQTPIVRT 695
            ++ +   + P+++HN + R +YQ +  ++Q +G+S      R D   + L  PQ P+ +T
Sbjct: 760  LMGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNPHIRVDTLSHQLYYPQRPLFKT 819

Query: 696  --------NTYTKYGID------EYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMC- 740
                    + YT +G        EY  G NAIVAV  + G++ ED++++N++S++RGM  
Sbjct: 820  VIADCLGRSDYTAFGRKDDYTRPEYFNGQNAIVAVNVHQGFNQEDSLVMNRASLERGMFR 879

Query: 741  --HGQIYQTETIDLSDDGNKVDRGQKL-FRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPY 797
              H + Y+T+ ++  D   ++   +K+ F + +  +     +D DGLPY+G  +   +  
Sbjct: 880  TEHLRSYKTD-VENKDGTKRLKLKEKIDFGKTESKRGRVDNLDDDGLPYIGASLQTND-- 936

Query: 798  CSIYDKTTNSWRTNS--RKGSESVFVDYVAVDMKNS-KNLPQKANIRFRHTRNPIIGDKF 854
              +  K + S   +S   K +E   V  V +   +  KN    A +  R  R P +GDKF
Sbjct: 937  -IVIGKVSESGEDHSIKLKHTEKGMVQKVLLSANDEGKNF---AVVTLRQVRTPCLGDKF 992

Query: 855  SSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHG 914
            SS HGQKGV   L    + PF+   G+ PD++INPHAFP+R T   LLE+   KG +  G
Sbjct: 993  SSMHGQKGVVGFLESQENFPFTH-EGIVPDIVINPHAFPTRQTPGQLLEAALGKGIACKG 1051

Query: 915  KFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCE 974
                ATPF  +                VD + E L   G++  G E + +G  G  +   
Sbjct: 1052 TMRYATPFTTAS---------------VDVIAEQLHKAGYSRWGAENVLNGRTGERMQSL 1096

Query: 975  IFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAA 1034
            +F+GP +YQRL HM  DK + R+TG +  +TRQP+  RKR GG++FGEMERD LLAHG+A
Sbjct: 1097 VFMGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGSA 1156

Query: 1035 YLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQT 1094
              LH+RL   SD+    +C  C  V            +R + G    R P    C  C++
Sbjct: 1157 ANLHERLFMLSDFSQMHICQTCERVANVV--------MRSVPGGKKIRGP---YCGFCKS 1205

Query: 1095 SKGMETVAMPYVFRYLAAELAAMNI 1119
            S+ +  + +PY  + L  EL +M I
Sbjct: 1206 SENIVRINVPYGAKLLYQELFSMGI 1230


>gi|390337473|ref|XP_003724570.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB2-like [Strongylocentrotus purpuratus]
          Length = 1142

 Score =  332 bits (850), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 303/1146 (26%), Positives = 495/1146 (43%), Gaps = 181/1146 (15%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGS---PVVRERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G      + ++   G+ P+ML++  C L G   
Sbjct: 109  MPNEARLRNLTYSAPLYVDITKTVIKDGEDPQETIHQKTFIGKIPIMLRSTYCLLNGLTD 168

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    S+   + +D +  +T  A    
Sbjct: 169  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMSTNSVYVFAKKDSKYAFT--AECRS 223

Query: 151  CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
            C+    + + TL ++ +  G         G+  +         +P+ +V +AL    D +
Sbjct: 224  CLEHSSRPTSTLWVHMMAKGGQGARKSAIGQRMISVLPYIRQEVPIMVVFRALGFVADRD 283

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAE---VQDLSLTTRLQCLQHIGEHFQP 257
            I  H+   +D+           P + E VK  L E   +Q+ S+      L  IG   + 
Sbjct: 284  ILEHIIYDFDD-----------PEMMEMVKPSLDEAFVIQEQSVA-----LNFIGA--RG 325

Query: 258  VIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNP 313
               G+  E     A  +++  +  H+  ++     K   L + + +L          D+ 
Sbjct: 326  ARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYCVHRLLLASIGRREVDDR 385

Query: 314  DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKN 373
            D   N+ + L G L+    +   ++ L++ +   Q  I + GK F+   LA IK      
Sbjct: 386  DHYGNKRLDLAGPLLAFLFRALFKNLLKEVRMYAQKFI-DKGKDFNM-ELA-IK------ 436

Query: 374  PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
             ++ I   ++  L TG    Q     Q RAG                             
Sbjct: 437  -TRIITDGLKYSLATGNWGDQKKAH-QARAG----------------------------- 465

Query: 434  RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
              + VR +L     F+   H   G   GL+ ++         Y S G+        + IL
Sbjct: 466  -VSQVRHIL---HSFIVYYHK--GHAVGLVKNLALMA-----YISVGS------QPSPIL 508

Query: 494  RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VS 547
              L    M  +L ++  S       + ++G  VG+    + E+++  L++L+      VS
Sbjct: 509  EFLEEWSM-ENLEEIAPSAINEATKIFVNGCWVGI--HRDPEQLMNTLKKLRRQMDIIVS 565

Query: 548  AASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN---------- 597
              S++ D  E      +  G      L     K +   R++S+  E   N          
Sbjct: 566  EVSMVRDIREREIRIFTDAGRICRPLLIVENQKLLLKKRHVSMLKEREYNNYSWQDLVAS 625

Query: 598  --IELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQS 653
              +E I   E+  V + +   D  + G       TH EIHP+ +L V A++ P+ DHNQS
Sbjct: 626  GVVEYIDTMEEETVMLAMTPDDLQEKGMGYCSTYTHCEIHPSMILGVCASIIPFPDHNQS 685

Query: 654  PRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAI 713
            PRN YQ  M KQ MG  +     R D   + L  PQ P+  T +       E P G N++
Sbjct: 686  PRNTYQSAMGKQAMGVYITNYHVRMDTLAHVLYYPQKPLTTTRSMEYLRFRELPAGINSV 745

Query: 714  VAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA- 772
            VA+ +YTGY+ ED++ILN S++DRG      Y++       +   VD+ +   + +++  
Sbjct: 746  VAIASYTGYNQEDSVILNASAIDRGFFRSVFYRSYK---DAESKAVDKDEMFEKPSRETC 802

Query: 773  ----KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTT---------NSWRTNSR------ 813
                 +++  ++ DG+   G  +     +    +             S R   R      
Sbjct: 803  QGMRNAVYDKLEEDGIIPPGSRVSGNRDFXICVNXYVXRPFKALEGTSRRFTKRDCSTFM 862

Query: 814  KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDM 873
            + +E+  +D V V +  +++  +   I+ R  R P IGDKF+SRHGQKG C   +   DM
Sbjct: 863  RSTETGIIDQVMVSI--NQDGYKFCKIKVRSVRTPQIGDKFASRHGQKGTCGIKYRVEDM 920

Query: 874  PFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDT 933
            PF+   G+ PD+IINPHA PSRMTI  L+E +  K  S  G+  DATPF +SV       
Sbjct: 921  PFT-CEGITPDIIINPHAIPSRMTIGHLIECLQGKVSSSKGEIGDATPFNDSVN------ 973

Query: 934  GTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKF 993
                    V ++  +L   G++  G EVL+ G  G ++  ++F+GP YYQRL+HMV DK 
Sbjct: 974  --------VQKISNLLHEYGYHQRGNEVLFCGFTGRKIGTQVFLGPTYYQRLKHMVDDKI 1025

Query: 994  QVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVC 1053
              R+ G +  + RQP++GR R GG+RFGEMERD  ++HGAA  L +RL   SD +   VC
Sbjct: 1026 HSRARGPVQILNRQPMEGRSRDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHVC 1085

Query: 1054 SLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAE 1113
            + CG +  A   +                      C  C+    +  V +PY  + L  E
Sbjct: 1086 NFCGLIAIANLRN------------------NTFECRGCKNKTQISQVRLPYACKLLFQE 1127

Query: 1114 LAAMNI 1119
            L +M I
Sbjct: 1128 LMSMCI 1133


>gi|429965159|gb|ELA47156.1| hypothetical protein VCUG_01345 [Vavraia culicis 'floridensis']
          Length = 1098

 Score =  331 bits (849), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 201/490 (41%), Positives = 263/490 (53%), Gaps = 83/490 (16%)

Query: 637  MLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTN 696
              S VA+  P+SD+NQSPRNMYQCQMAKQ M +   A + R D K Y L   Q P++ T 
Sbjct: 691  FFSYVASTIPFSDYNQSPRNMYQCQMAKQAMAYPTFAYERRTDSKFYVLNNMQRPLIGT- 749

Query: 697  TYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDG 756
                        GTN  +AVL+YT YDMEDAM++NK +++RG+  G +Y T+ ++ +D  
Sbjct: 750  ------FLSALLGTNVYIAVLSYTSYDMEDAMVINKGAIERGLFDGYVYITKVVERTDGV 803

Query: 757  NKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGS 816
               D G+ L     D   L+ V D + + Y G+        C+         R +  + +
Sbjct: 804  VLPDVGELLM----DGSVLY-VKDGESVKYTGE--------CA---------RVHRVRVT 841

Query: 817  ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS 876
            +++                  A I  R  R+P IGDKF SRHGQKGV S  +  +D+PF+
Sbjct: 842  DTL------------------AIITLRVRRSPQIGDKFCSRHGQKGVLSYRYRAVDLPFN 883

Query: 877  GVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTD 936
               GM PDLIINPHAFPSRMT+ M++E +A     + G+     PF     K  G   T 
Sbjct: 884  E-HGMVPDLIINPHAFPSRMTVGMMMEMLAGTVAVVKGERYACPPF-----KEYGRAHTH 937

Query: 937  ESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVR 996
            E         E L+  G NY+G E LYSGV G  L   +F G  YYQRLRHMVSDK+QVR
Sbjct: 938  EY------FCEQLQALGLNYYGNETLYSGVTGQPLQARVFTGMCYYQRLRHMVSDKWQVR 991

Query: 997  STGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLC 1056
            S G +   TRQPIKGRK+GGG+RFGEMERD+L+AHG AYLL DRL  CSD    + C  C
Sbjct: 992  SVGPVQAQTRQPIKGRKKGGGVRFGEMERDALIAHGCAYLLSDRLMECSDKTAFEYCEQC 1051

Query: 1057 GSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAA 1116
             + L A                       +  C  C   K ++ V +PYVF+YL  EL  
Sbjct: 1052 KTFLFAR--------------------NGECLC-GC---KRVKVVYLPYVFKYLCTELLG 1087

Query: 1117 MNIKITLQLG 1126
            MNI + + +G
Sbjct: 1088 MNIFVEVDVG 1097



 Score =  178 bits (451), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 154/471 (32%), Positives = 235/471 (49%), Gaps = 78/471 (16%)

Query: 26  MLDEGLSEMF-DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCH 84
           + D+ ++++  + C +   SY G++   V   +++ G     E  + G FPVM+ +R CH
Sbjct: 45  LADDTITKLLPNDCVEGMRSYRGRMHVKV---HVNDGIRGWDELKSAGYFPVMVGSRLCH 101

Query: 85  LQGADSQKLVSLKEEAAE-----MGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRR 139
            +  + ++L S  ++  +      GGYF+++G E+V R +I+PK+N+P  + R SFR + 
Sbjct: 102 NE-INEEQLTSYYDDVGDGLGEARGGYFVIDGFEKVVRFLIVPKRNFPFLIQRESFRAKN 160

Query: 140 EGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDL 199
             +T KAV  R V  +   V L  + + + +V + F L+ +EY +PV +VLKAL D  D 
Sbjct: 161 AMFTAKAVEYRSVYCEVGHV-LYFHLMTDENVMMRFTLKRREYSVPVILVLKALKDVTDR 219

Query: 200 EIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVI 259
           +I + L            G  G        + IL    D  +TT     + +G  F  + 
Sbjct: 220 QILDLL------------GVEG--------RFIL----DTGVTT-ANAQKMLGAKFASL- 253

Query: 260 DGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQ 319
            G+            + D I  HL   +DKF+LLI +L++L          D+ D+L +Q
Sbjct: 254 -GIN-----------VLDAILPHLRTYSDKFDLLILILRRLRD-----EEYDDMDALSSQ 296

Query: 320 EILLPGHLITIYLKEKLEDWLR---------KGKKLIQDEIENNGKKFDFFNLAN----- 365
           E+     L +  L++KLE+ L          +G    + + + +GK  D    AN     
Sbjct: 297 ELFGVRQLFSGLLRDKLEEGLEVLRYVLTESEGTNEGRSKKKESGKMRDELAKANNTPND 356

Query: 366 ----IKKVMEKNPSKQ-----IGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLR 416
                K V+  N   +     +    E  L TG L  +T  DL Q  G  V AER+N  R
Sbjct: 357 SGSGSKVVLTANDVLKKLRFNVAKRAEHFLATGNLILRTN-DLLQTTGLAVLAERINTYR 415

Query: 417 FISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMT 467
           FIS F +V+RGA FA L+TTSVR L PES+GFLCPVHTPDG PCGL+ HM 
Sbjct: 416 FISHFESVNRGAFFAMLKTTSVRALRPESFGFLCPVHTPDGAPCGLIVHMA 466


>gi|453088008|gb|EMF16049.1| DNA-directed RNA polymerase III subunit RPC2 [Mycosphaerella
            populorum SO2202]
          Length = 1204

 Score =  330 bits (845), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 200/511 (39%), Positives = 267/511 (52%), Gaps = 56/511 (10%)

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH EI P  +L  VA L PY  HNQSPRN YQC M KQ +G        R D  LY +  
Sbjct: 733  THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFTRIDTLLYLMVY 792

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
            PQ P+V T T      D+ P G NA+VAV++Y+GYD+EDA++LNK+S DRG    Q+++ 
Sbjct: 793  PQKPMVTTRTIELVKYDKLPAGQNAVVAVMSYSGYDIEDALVLNKASCDRGFGRCQVFKK 852

Query: 748  ETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPY---------C 798
             ++ L    N      +L  R+ +  + H  I  DGL  VG  +  G+ Y          
Sbjct: 853  VSMPLKSYQNGYT--DRLADRDPN-NARHRKIGKDGLVEVGSELDNGDTYMLKEAPINQV 909

Query: 799  SIYDKTTNSWRTN--SRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSS 856
                 +   W     S K  +  + D V +   +  +   K  I+ R TR P IGDKFSS
Sbjct: 910  QTIPNSQQRWSPAHMSYKTPDPCYADKVVITANDRNDTILK--IQTRQTRRPEIGDKFSS 967

Query: 857  RHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKF 916
            RHGQKGV   L    DMPFS   G+ PD+I+NPH FPSRMT+  +LE V+ K G L GK 
Sbjct: 968  RHGQKGVVGLLAEQADMPFSD-QGVVPDIIMNPHGFPSRMTVGKMLELVSGKAGVLAGKQ 1026

Query: 917  MDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIF 976
               T F  S                V+++G +L   GF+Y G + L SG+ G  L   +F
Sbjct: 1027 EYGTAFGGSK---------------VEDMGAVLIKHGFSYSGKDCLTSGITGESLPFYVF 1071

Query: 977  IGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYL 1036
             GP+YYQ+L+HMV DK   R+TG    +TRQP +GR R GG+R GEMERD L+A+GA+ L
Sbjct: 1072 FGPIYYQKLKHMVQDKMHARATGPRAILTRQPTEGRSRQGGLRLGEMERDCLIAYGASQL 1131

Query: 1037 LHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSK 1096
            L +RL   SD H  DVC  CG +    +                          +C +S+
Sbjct: 1132 LLERLMISSDAHDVDVCQTCGMMGYNNWC------------------------QSCSSSR 1167

Query: 1097 GMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
             +  + MPY  + L  EL +MN+K +LQL D
Sbjct: 1168 SVVRMTMPYAAKLLIQELMSMNVKASLQLAD 1198



 Score = 91.7 bits (226), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 96/452 (21%), Positives = 202/452 (44%), Gaps = 38/452 (8%)

Query: 36  DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
           + CR   ++Y+  +  D  F Y      V +     G+ P+ML++ +C L G    ++  
Sbjct: 173 NECRLRDMTYSAPIYVD--FVYPRQSGNVRKTDVLIGRVPMMLRSSKCVLHGRSESEMSF 230

Query: 96  LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
           L E A + GGYFI+ G E+V   +++ +Q     ++  SF         K V+   V   
Sbjct: 231 LNECAVDPGGYFIVRGQEKV---ILVQEQLSKNRVIVESF---------KGVIQASVTSH 278

Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYL--LPVGIVLKALVDTNDLEIFNHLTCCYDEKY 213
            +++  K Y L+    +   +L+    +  +PV I+++A+   +D EI   L    D +Y
Sbjct: 279 TANIKTKTYVLVK---KGHLYLKHNSLVEDVPVAIIMRAMGVQSDHEIL-LLAAGNDAQY 334

Query: 214 KKEKGAVGSPLVSERVKIILAEVQDLS-LTTRLQCLQHIGEHFQPVIDGLQSESYYAVAE 272
           + E       L    ++ +  + Q L  +  RL+  + I +H +      + ++   +A 
Sbjct: 335 QDE---FAPNLELAALEGVFTQEQALDFIAARLKPDRFINKHKE--FKTPKQQALEKLAG 389

Query: 273 TVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYL 332
           T+I  ++ V   +   K   +  M +++   ++   + D+ D + N+ + L G ++++  
Sbjct: 390 TII-PHVEVEGLNFRPKALYIAHMTRRVLMAINDPKLVDDRDYVGNKRLELAGQMLSLLF 448

Query: 333 KEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLA 392
           ++  +D +R+ +  +   ++ +    +F  +  ++++       +I + +E  + TG   
Sbjct: 449 EDLFKDSIRQIQMTMDKMLQKHNPTSEFDPVRIVEQI-----ESRITSGMERAISTGNWT 503

Query: 393 TQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPESWGFLCP 451
            +       RAG T    RL+++  +     +   + F   R  S  R L P  +G LC 
Sbjct: 504 LKRF--RMDRAGVTHVLSRLSYISALGMMTRI--SSQFEKTRKVSGPRALQPSQFGMLCT 559

Query: 452 VHTPDGEPCGLLNHMTSTCRVASYYDSRGNIR 483
             TP+GE CGL+ ++     + +  D  G +R
Sbjct: 560 SDTPEGEACGLVKNLALMTHITT-ADDEGPVR 590


>gi|225678942|gb|EEH17226.1| DNA-directed RNA polymerase III subunit RPC2 [Paracoccidioides
            brasiliensis Pb03]
          Length = 1232

 Score =  330 bits (845), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 185/465 (39%), Positives = 257/465 (55%), Gaps = 35/465 (7%)

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH EI P  +L  VA L PY  HNQSPRN YQC M KQ +G        R D  LY +  
Sbjct: 765  THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYTMVY 824

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
            PQ P+V+T T      D  P G  A VAV++Y+GYD+EDA++LNK S+DRG    Q+++ 
Sbjct: 825  PQKPMVKTRTIELIKYDRLPAGQAATVAVMSYSGYDIEDALVLNKGSIDRGFGRCQVFRK 884

Query: 748  ETIDLSDDGNKV-DRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIY--DKT 804
             + +L    N   D+ +   R N      H+++D+DGL  VG+ ++ GE Y +    +  
Sbjct: 885  YSTNLKSYSNGTKDKLKGPDRENGLPVRKHALLDNDGLAAVGEKVNHGEVYINKVTPENA 944

Query: 805  TNSWRTNSRKGS--------------ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPII 850
             +S  T S  G               +  ++D V +    ++N  Q   ++ R TR P +
Sbjct: 945  LSSGITGSDAGRPITYIPSPQTYKLPDPSYIDKVMISSTEAEN--QLIKVQTRQTRRPEV 1002

Query: 851  GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGG 910
            GDKFSSRHGQKGV   +    DMPFS + G+ PD+I+NPH FPSRMT+  +LE VA K G
Sbjct: 1003 GDKFSSRHGQKGVVGIIAEQADMPFSDL-GIVPDIIMNPHGFPSRMTVGKMLELVAGKAG 1061

Query: 911  SLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTE 970
             L G+F   T F  S                V+E+  +L   GF+Y G + L SG+ G  
Sbjct: 1062 ILSGQFSYGTAFGGSP---------------VEEMSAVLVKHGFSYGGKDCLTSGITGES 1106

Query: 971  LTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLA 1030
            L   +F+GP+YYQ+L+HMV DK   R+ G    +TRQP +GR R GG+R GEMERD L+A
Sbjct: 1107 LPAYVFMGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIA 1166

Query: 1031 HGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREI 1075
            +G + LL +RL   SD +  DVC  CG +  + +    K  ++E+
Sbjct: 1167 YGTSQLLLERLMISSDQYEVDVCESCGFMGYSGWCQRSKLLVQEL 1211



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 110/447 (24%), Positives = 185/447 (41%), Gaps = 56/447 (12%)

Query: 36  DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
           + CR   ++Y   ++ D  F+Y+     V R     G+ PVML++ +C L      ++  
Sbjct: 202 NECRLRDMTYASPILVD--FEYVRGRQRVKRNGTAIGRMPVMLRSSKCVLSNKSEAEMQL 259

Query: 96  LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
           L+E   + GGYFI+NG E+    VIL ++    + V      ++E            RK 
Sbjct: 260 LQECPLDPGGYFIVNGTEK----VILVQEQLSKNRVIVETDLKKEIVQASVTSSSNERKS 315

Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
           +S + LK   +    VR     +     +P+ I+LKA+   +D E+   L    D  Y+ 
Sbjct: 316 KSYIILKKERIY---VRHNVLNED----VPIVILLKAMGIQSDKEML-LLVAGIDSTYQ- 366

Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHF----QPVIDGLQSESYYAVA 271
                      E   I   E   L + T+ Q L++IG       +P   G+   +Y   A
Sbjct: 367 -----------EDFAINFEEAVKLGIYTQHQALEYIGSRIKINRKPNNFGVIRRNYVQEA 415

Query: 272 ETVIRDYIFVHLNDNNDKFN---LLIFMLQKLFSLVDHT-SVSDNPDSLQNQEILLPGHL 327
              I   I  H+   N  F    L +  + +   +  H  S+ D+ D + N+ + L G L
Sbjct: 416 IEAISSVIISHVVVENLNFRPKALYVAHMARRVLMAKHDPSLVDDRDYVGNKRLELAGQL 475

Query: 328 ITIYLKEKLEDWLRKGKKLIQDEIENNGKK------FDFFNLANIKKVMEKNPSKQIGTS 381
           +++      ED  +K +  I+  I+   KK      FD + +  I           I   
Sbjct: 476 LSLL----FEDLFKKFQFDIKMNIDKVLKKPVRTEQFDAYGVVAIH-------GNHITQG 524

Query: 382 IETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRK 440
           +   + TG  + +      +RAG T    RL+++  +     +   + F   R  S  R 
Sbjct: 525 MNRAISTGNWSLKRF--RMERAGVTHVLSRLSYIAALGMMTRI--SSQFEKTRKVSGPRA 580

Query: 441 LLPESWGFLCPVHTPDGEPCGLLNHMT 467
           L P  +G LCP  TP+GE CGL+ ++ 
Sbjct: 581 LQPSQFGMLCPSDTPEGEACGLVKNLA 607


>gi|358396944|gb|EHK46319.1| hypothetical protein TRIATDRAFT_132468 [Trichoderma atroviride IMI
            206040]
          Length = 1157

 Score =  329 bits (843), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 195/526 (37%), Positives = 272/526 (51%), Gaps = 71/526 (13%)

Query: 627  ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQ 686
             TH EI P  +L  VA L P+  HNQSPRN YQC M KQ +G        R D  LY L 
Sbjct: 672  TTHLEIEPFTLLGAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAHNQFNRIDTLLYTLV 731

Query: 687  TPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQ 746
             PQ P+V T T      D+ P G NA V V++Y+GYD+EDA++LNK+S+DRG    Q+++
Sbjct: 732  YPQRPMVITKTIQLIHYDKLPAGQNATVVVMSYSGYDIEDALVLNKASIDRGFGRCQVFR 791

Query: 747  TETIDLS-----------DDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGE 795
              T +L            D  N+V+ G  + RR K     H  +D+DGL  VGQ IH GE
Sbjct: 792  KYTTELQKYPNGRRERVGDPVNEVENG--VMRRIKK----HEALDADGLAIVGQRIHSGE 845

Query: 796  PYCSI------------YDKTTNSWRTN--SRKGSESVFVDYVAVDMKNSKNLPQKANIR 841
                              D+  + +R    S + ++  ++D V +          K  ++
Sbjct: 846  AMVKKETPLDMTTTGIGLDRGPSEYRDTAVSYRIADPAYIDKVMISQTEKDTTVIK--VQ 903

Query: 842  FRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAML 901
             R TR P +GDKFSSRHGQKGV   +    DMPF+  +G+ PD+I+NPH FPSRMT+  L
Sbjct: 904  TRQTRRPELGDKFSSRHGQKGVVGIIVDQEDMPFAD-SGLCPDIIMNPHGFPSRMTVGKL 962

Query: 902  LESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEV 961
            LE +  K   +HG+      F ++ +              V ++ E+L   GF++ G + 
Sbjct: 963  LECLTGKASIVHGR--KDYGFGDAFR-----------SHPVQQVSEVLVDNGFSWEGKDY 1009

Query: 962  LYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFG 1021
              SG+ G  L   IF GP+YYQRL+HMV DK   R+ G    +TRQP +GR R GG+R G
Sbjct: 1010 FTSGITGEPLEAYIFNGPIYYQRLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLG 1069

Query: 1022 EMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPA 1081
            EMERD L+A+GA+ LL +RL   SD  + D+C  CG      +                 
Sbjct: 1070 EMERDCLIAYGASQLLLERLMLSSDGTMIDICQQCGLFGYKGY----------------- 1112

Query: 1082 RAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
                   C  C++++ +  + MPY  + L  EL +MN+ + LQL D
Sbjct: 1113 -------CSTCKSTRDVTKMQMPYAAKLLVQELISMNVGVRLQLED 1151



 Score =  106 bits (264), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 103/453 (22%), Positives = 192/453 (42%), Gaps = 57/453 (12%)

Query: 38  CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
           CR   ++Y   +  D+   Y+     +VR+    G+ PVMLK+ +C L GA++ ++  + 
Sbjct: 109 CRLRDMTYAAPIFVDI--AYIRDKQKIVRKNVPLGRMPVMLKSCKCRLSGANNSEMEKMN 166

Query: 98  EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
           E   + GGYFI+NG E+    VIL ++    + V     ++    +         RK ++
Sbjct: 167 ECPLDPGGYFIVNGTEK----VILIQEQLSKNRVIVEADEKNNVISASVTSSTHERKSKT 222

Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            VTLK   ++   +     ++G    +P+ I+LKAL   +D EI   L    D +Y+ E 
Sbjct: 223 YVTLKKDKIV---LTHNILVEG----IPIVIILKALGGLSDYEIM-QLVAGSDGRYQDE- 273

Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ---------------PVIDGL 262
                        +   E     + T+ Q L++IG   +                V +GL
Sbjct: 274 -----------FLVNFDEAAKAGIFTQHQALEYIGSRVKMGSRRGQFGAQARRNNVEEGL 322

Query: 263 QSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEIL 322
            + +   +A   I    F        K   +  M +++        + D+ D + N+ + 
Sbjct: 323 DALANLIIAHVPIEGLDFY------PKAIYVAMMTRRVLMASQDNKLVDDRDFVGNKRLE 376

Query: 323 LPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSI 382
           L G L+++  ++  + ++ + K  I   ++ N +      +      M  N +  IG  I
Sbjct: 377 LAGQLLSLLFEDLFKRFMGEVKMSIDKFLKKNNRAVPLDAVH-----MISNHANSIGLGI 431

Query: 383 ETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKL 441
              +++G  + +   ++  RAG T    RL+++  +     +   + F   R  S  R L
Sbjct: 432 NRAIQSGNWSVKR-FNM-NRAGVTHVLSRLSYISALGMMTRI--SSQFEKTRKVSGPRAL 487

Query: 442 LPESWGFLCPVHTPDGEPCGLLNHMTSTCRVAS 474
            P  WG LCP  TP+GE CGL+ ++     + +
Sbjct: 488 QPSQWGMLCPSDTPEGEACGLVKNLALMTHITT 520


>gi|150401219|ref|YP_001324985.1| DNA-directed RNA polymerase subunit B' [Methanococcus aeolicus
            Nankai-3]
 gi|150013922|gb|ABR56373.1| RNA polymerase Rpb2 domain 6 [Methanococcus aeolicus Nankai-3]
          Length = 611

 Score =  329 bits (843), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 194/521 (37%), Positives = 278/521 (53%), Gaps = 55/521 (10%)

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH EI P  +L + A + PY +HN +PR      M KQ++G  +  +K R D K + L  
Sbjct: 123  THLEIDPLSILGIGAGVAPYPEHNSAPRITMAAAMGKQSLGMPLANMKLRMDTKAHLLHY 182

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
            PQ PIVRT      G D  P G N +VAV++Y GY+MEDA I+NK+S++RG+     +++
Sbjct: 183  PQVPIVRTKHQEILGFDRRPAGQNFVVAVMSYEGYNMEDAFIINKASIERGLARSSFFRS 242

Query: 748  -ETIDLSDDGNKVDRGQ--KLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCS----- 799
             E  +    G +VDR +  +   R   A+  +  +  DG+  V   +  G+         
Sbjct: 243  YEGFEKRHPGGQVDRFEIPEQGVRGYRAEEAYRNLGDDGIVEVESEVKSGDVIIGKTSPP 302

Query: 800  -IYDKTTNSWRTNSRKGSESVFVDYV------AVDMKNSKNLPQKANIRFRHTRNPIIGD 852
               ++   S R+ S++   S+ + +       AV +  +K   + A IR R  R P +GD
Sbjct: 303  RFLEEQDISLRSKSQRRDTSITIRHGEGGIVDAVILSETKEGNRLAKIRVRDLRIPELGD 362

Query: 853  KFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSL 912
            KF+SRHGQKGV   + P  DMPF+   G+ PDLIINPHA PSRMTI  +LE +  K GS+
Sbjct: 363  KFASRHGQKGVLGLIVPQEDMPFT-ENGVVPDLIINPHAIPSRMTIGQVLEMIGGKVGSM 421

Query: 913  HGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELT 972
            + K +D T F+       GD           EL   +  CG+ ++G EV++ G  G +L 
Sbjct: 422  NCKRIDGTIFS-------GDPEW--------ELRSSMEKCGYKHNGKEVMFDGKTGKKLE 466

Query: 973  CEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHG 1032
            CEIF+G  YYQ+L H+V+ K   RS G +  +TRQP +GR R GG+RFGEMERD L+ HG
Sbjct: 467  CEIFVGIAYYQKLHHLVAGKMHARSRGPIQVLTRQPTEGRAREGGLRFGEMERDVLIGHG 526

Query: 1033 AAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHAC 1092
             A LL +RL   SD +   +CS CG V     I+  KR ++               C AC
Sbjct: 527  TALLLKERLFDESDPYECHICSNCGEVA----IYDHKRGMKR--------------CQAC 568

Query: 1093 ------QTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
                  Q ++ + +V +PY F+ L  EL +M I   L+L D
Sbjct: 569  GETEDVQNNRKIPSVRLPYAFKLLLDELRSMGINPKLELKD 609


>gi|260826766|ref|XP_002608336.1| hypothetical protein BRAFLDRAFT_126222 [Branchiostoma floridae]
 gi|229293687|gb|EEN64346.1| hypothetical protein BRAFLDRAFT_126222 [Branchiostoma floridae]
          Length = 1104

 Score =  329 bits (843), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 288/1051 (27%), Positives = 472/1051 (44%), Gaps = 127/1051 (12%)

Query: 34   MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
            M +  R   ++Y+  L  D+    +  G   +    ++   G+ P+ML++  C L G   
Sbjct: 111  MPNEARLRNLTYSAPLYVDITKTIVKDGEERIETQHQKTFIGKIPIMLRSTYCLLSGLTD 170

Query: 91   QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
            + L  L E   + GGYFI+NG E+V   +I  ++    S+   + +D +  +T +  +  
Sbjct: 171  RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNSVYVFAKKDSKYAFTGE--IRS 225

Query: 151  CVR-KDQSSVTLKLYYLLNGSV---------RLGFWLQGKEYLLPVGIVLKALVDTNDLE 200
            C+    + + TL ++ L  G           R+   L      +P+ IV +AL   +D +
Sbjct: 226  CLEHSSRPTSTLWVHMLARGGTGQRKSAIGQRIVAVLPYIRQEIPIIIVFRALGFVSDRD 285

Query: 201  IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEH-FQPVI 259
            I  H+   +D+           P + E +K  L E     +  +   L  IG    +P  
Sbjct: 286  ILEHIIYDFDD-----------PEMMEMLKPSLDEA--FVIQEQNVALNFIGARGAKP-- 330

Query: 260  DGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
             G+  +     A  +++  +  H+  ++     K   L +++ +L          D+ D 
Sbjct: 331  -GVTKDKRIKYAREILQKEMLPHVGISDYCETKKAYFLGYIVHRLLLAALGRRELDDRDH 389

Query: 316  LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPS 375
              N+ + L G L+  YL   L   L K  ++   +  + GK F+   LA IK       +
Sbjct: 390  YGNKRLDLAGPLLA-YLFRGLFKNLTKEVRIYAQKFIDRGKDFNL-ELA-IK-------T 439

Query: 376  KQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
            + I   ++  L TG    Q     Q RAG +    RL F   +S  R ++      G + 
Sbjct: 440  RIITDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KL 497

Query: 436  TSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV 495
               R+L    WG +CP  TP+G+  GL+ ++     ++  +D   N +    ++   L  
Sbjct: 498  AKPRQLHNSLWGMICPAETPEGQAVGLVKNLALMAYISMVHD---NGQAVGLVKNLALMA 554

Query: 496  LIGVGMIPS----------LPKLVKSGPPAVLS---VLLDGRVVGVIPSSEIEKVVAHLR 542
             I VG  PS          +  L +  P A+ +   + ++G  VGV    + E+++  L+
Sbjct: 555  YISVGSQPSPILEFLEEWSMENLEEVAPSAIANATKIFVNGCWVGV--HRDPEQLMNTLK 612

Query: 543  RLK------VSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQ 596
            +L+      VS  S++ D  E      +  G      L     K +    ++ +  E   
Sbjct: 613  KLRRQMDIIVSEVSMVRDIREREIRIFTDAGRICRPLLIVEKQKLLLKKHHVDMLKEREY 672

Query: 597  N------------IELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVA 642
            N            +E I   E+  V + +   D  D G       TH EIHP+ +L V A
Sbjct: 673  NNYSWQDLVAGGVVEYIDTLEEETVMLAMTPDDLQDKGVAYCSTYTHCEIHPSMILGVCA 732

Query: 643  NLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYG 702
            ++ P+ DHNQSPRN YQ  M KQ MG  +     R D   + L  PQ P+V T +     
Sbjct: 733  SIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLR 792

Query: 703  IDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRG 762
              E P G NAIVA+ +YTGY+ ED++I+N S++DRG+     Y++     S  G  +D+ 
Sbjct: 793  FRELPAGINAIVAIASYTGYNQEDSVIMNASAIDRGLFRSVFYRSYKESESKKG--LDQE 850

Query: 763  QKLFRRNKDA-----KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTN 806
            +   +  +D       +++  +D DG+             +G+ +   E    +   T  
Sbjct: 851  EIFEKPTRDEVTGMRNAIYDKLDDDGIIAPGVRVSGEDVIIGKTVTLPENEDELESTTKR 910

Query: 807  SWRTNSR---KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGV 863
              + +S    + SE+  VD V V +       +   +R R  R P IGDKF+SRHGQKG 
Sbjct: 911  FTKRDSSTFLRSSETGIVDQVMVSINQEGY--KFCKVRVRSVRIPQIGDKFASRHGQKGT 968

Query: 864  CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFA 923
            C   +   DMPF+   G+ PD+IINPHA PSRMTI  L+E +  K  +  G+  DATPF 
Sbjct: 969  CGITYRQEDMPFTA-EGISPDIIINPHAVPSRMTIGHLIECLQGKVSANKGEIGDATPFN 1027

Query: 924  NSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQ 983
            ++V               V ++  +L   G++  G EV+Y+G  G +L+ ++FIGP YYQ
Sbjct: 1028 DAVN--------------VQKISNLLHEYGYHLRGNEVVYNGFTGRKLSTQLFIGPTYYQ 1073

Query: 984  RLRHMVSDKFQVRSTGTMDQITRQPIKGRKR 1014
            RL+HMV DK   R+ G +  + RQP++GR R
Sbjct: 1074 RLKHMVDDKIHSRARGPVQNLNRQPMEGRSR 1104


>gi|242041665|ref|XP_002468227.1| hypothetical protein SORBIDRAFT_01g042100 [Sorghum bicolor]
 gi|241922081|gb|EER95225.1| hypothetical protein SORBIDRAFT_01g042100 [Sorghum bicolor]
          Length = 1228

 Score =  328 bits (842), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 314/1165 (26%), Positives = 512/1165 (43%), Gaps = 204/1165 (17%)

Query: 37   HCRQAKISYTGKLMADVEFQYLD--------AGSPVVRERFNF---------GQFPVMLK 79
            H R   ++Y  +L+ +V  Q            G+    ++ +F         G  PVM+K
Sbjct: 177  HARLQNMTYASRLIVEVNIQVYSLEKSDKSKTGNDGFVQKRDFMNETHWIFIGLLPVMVK 236

Query: 80   TRRCHLQGADSQKLVSLKEEAA--EMGGYFILNGLERVF---------RSVILPKQNYPM 128
            +  C L         SLKE     + GGYF++ G+E+VF         R  I+ +  + +
Sbjct: 237  SNLCLLH--------SLKESECLFDAGGYFLVKGMEKVFIAQELRCLKRLWIIDRPCWMI 288

Query: 129  SMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGS--VRLGFWLQGKEYLLPV 186
            S + S  + RR       + I+ V   +S          +GS  + + F        +PV
Sbjct: 289  SFM-SEMKRRR-------IYIKLVESTRSED-------FSGSKIISISFLYA----TMPV 329

Query: 187  GIVLKALVDTNDLEIFN--HLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTR 244
             ++  AL  ++D E F+   +  C                V   +   + E  +L    R
Sbjct: 330  WLLFFALGISSDKEAFDVIDMQDC-------------DASVINTISATIKESDELCEGFR 376

Query: 245  LQCLQHIGEHFQPVIDGLQSESYYAVAETV---IRDYIFVHLNDNNDKFNLLIFMLQKLF 301
                    +  +  +D L   S +  AE+    I  ++F  ++ N +K   L +M++ L 
Sbjct: 377  KS------DKARQYVDELVKSSRFPPAESFDDYIARFLFPDISGNRNKALFLGYMVKCLL 430

Query: 302  SLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFF 361
                     DN D  +N+ + LPG L+   L+  L    ++  K IQ ++ ++ +  D  
Sbjct: 431  MAFTGKRKCDNKDDFRNKRLDLPGELLGRELRAHLRLAEKRMVKAIQRDLNSDRELQDL- 489

Query: 362  NLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRA----GYTVQAERLNFLRF 417
                          + I  SI T   +   +T +     +RA    G      R N L+ 
Sbjct: 490  -------------ERYIDASIVTNGLSRAFSTGSWCHPYKRAERCSGIVATLRRTNPLQM 536

Query: 418  ISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYD 477
            +S  R   +  ++AG +    R   P  WG LC + TPDGE CGL+ ++  T  V+S   
Sbjct: 537  MSDLRKTRQRVAYAG-KAGDARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTAIVSS--- 592

Query: 478  SRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKV 537
                     ++   ++   I  GM   L  +       +  + L+G  VG    S     
Sbjct: 593  ---------RVVQPLIESFISCGM-SKLNDIPTEHIQRMDKIFLNGNWVGSCKDSA--SF 640

Query: 538  VAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------RNISLP 591
            V  LR ++ S  S+I   +E+          +  + +F+   + +RP+      + I  P
Sbjct: 641  VFRLRCMRRS--SLIDPQVEI-----KRDKHHKEVRVFSDAGRILRPLLVVENLKKIRKP 693

Query: 592  SEES---------QNIELIGPFEQVFMEIRCPDGGDGGRRNAFPA-------THEEIHPT 635
               S         + IE IG  E+   +I+C      G R+ F +       TH E+ P+
Sbjct: 694  KGRSFSFQELMQQEIIEFIGVEEE--EDIQCA----WGIRHLFESEGAISSYTHCELDPS 747

Query: 636  GMLSVVANLTPYSDHNQSPRNMYQCQM-AKQTMGFSVQALKFRADQKLYHLQTPQTPIVR 694
             +L +   + P+++HN + R +YQ +  ++Q +G+S      R D   + L  PQ P+ +
Sbjct: 748  FLLGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNPHIRVDTLSHQLYYPQRPLFK 807

Query: 695  T--------NTYTKYGID------EYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMC 740
            T        + YT +G        EY  G NAIVAV  + G++ ED++++N++S++RGM 
Sbjct: 808  TVIADCLGRSDYTTFGRKDDFMRPEYFNGQNAIVAVNVHQGFNQEDSLVMNRASLERGMF 867

Query: 741  HGQIYQTETIDLSD-DGNK-VDRGQKL-FRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPY 797
              +  ++   D+ + DG K +   +K+ F + +  +     +D DGLPY+G  +   +  
Sbjct: 868  RTEHLRSYKADVENKDGTKRLKLKEKIDFGKTESKRGRVDNLDDDGLPYIGASLQTNDI- 926

Query: 798  CSIYDKTTNSWRTNS--RKGSESVFVDYVAVDMKNS-KNLPQKANIRFRHTRNPIIGDKF 854
              +  K + S   +S   K +E   V  V +   +  KN    A +  R  R P +GDKF
Sbjct: 927  --VIGKVSESGEDHSIKLKHTEKGMVQKVLLSANDEGKNF---AVVTLRQVRTPCLGDKF 981

Query: 855  SSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHG 914
            SS HGQKGV   L    + PF+   G+ PD++INPHAFP+R T   LLE+   KG +  G
Sbjct: 982  SSMHGQKGVVGFLESQENFPFTH-KGIVPDIVINPHAFPTRQTPGQLLEAALGKGIACKG 1040

Query: 915  KFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCE 974
                ATPF  +                VD + E L   G++  G E + +G  G  +   
Sbjct: 1041 TMRYATPFTTAS---------------VDVIAEQLHRAGYSRWGTENVLNGRTGERMQSL 1085

Query: 975  IFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAA 1034
            IF+GP +YQRL HM  DK + R+TG +  +TRQP+  RKR GG++FGEMERD LLAHG+A
Sbjct: 1086 IFMGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGSA 1145

Query: 1035 YLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQT 1094
              LH+RL   SD+    +C  C  V            +R + G    R P    C  C++
Sbjct: 1146 ANLHERLFMLSDFSQMHICQTCERVANVV--------MRSVSGGKKIRGP---YCGFCKS 1194

Query: 1095 SKGMETVAMPYVFRYLAAELAAMNI 1119
            S+ +  + +PY  + L  EL +M I
Sbjct: 1195 SENIVRINVPYGAKLLYQELFSMGI 1219


>gi|449523027|ref|XP_004168526.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc2-like, partial
            [Cucumis sativus]
          Length = 750

 Score =  328 bits (841), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 200/500 (40%), Positives = 271/500 (54%), Gaps = 48/500 (9%)

Query: 627  ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQ 686
             TH EI P  +L VVA L PY  HNQSPRN YQC M KQ MG        R D  LY L 
Sbjct: 281  TTHIEIEPFTILGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLRRMDTLLYLLV 340

Query: 687  TPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQ 746
             PQ P++ T T    G D+   G NA VAV++Y+GYD+EDA+++NKSS+DRG     +++
Sbjct: 341  YPQRPLLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVFK 400

Query: 747  T-ETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCS----IY 801
               +++   + N  DR  +   RN+D      ++D DGL   G++I P + Y +    I 
Sbjct: 401  KYSSVNQKYENNTADRIVRP-NRNEDFTGNMQILDDDGLAAPGEIIRPNDIYVNKQSPII 459

Query: 802  DKTT-------NSWRTNSR--KGSES--VFVDYVAVDMKNSKNLPQKANIRFRHTRNPII 850
             K +       N++R   +  KGSE     VD VA+    +  L  K  IR   TR P +
Sbjct: 460  TKGSPLPGIPDNAYRPCRQIFKGSEGEPTVVDRVALSTDKNDCLCIKFLIR--QTRRPEL 517

Query: 851  GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGG 910
            GDKFSSRHGQKGVC  +    D PFS   G+ PDLI+NPH FPSRMT+  ++E +  K G
Sbjct: 518  GDKFSSRHGQKGVCGTIVQQEDFPFS-ERGICPDLIMNPHGFPSRMTVGKMIELLGGKAG 576

Query: 911  SLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTE 970
               G+F   + F        G+      K  VD + E L   GF+Y+G + LYSG+ G  
Sbjct: 577  VSCGRFHYGSAF--------GEPSGHADK--VDAISETLIKRGFSYNGKDFLYSGITGCP 626

Query: 971  LTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLA 1030
            L   IF+GP+YYQ+L+HMV DK   R +G    +TRQP +GR R GG+R GEMERD L+A
Sbjct: 627  LQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIA 686

Query: 1031 HGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCH 1090
            +GA+ L+++RL   SD     VC +CG  L   + H  K  I                C 
Sbjct: 687  YGASMLIYERLMISSDPFEVQVCRVCG--LLGYYNHKLKTGI----------------CS 728

Query: 1091 ACQTSKGMETVAMPYVFRYL 1110
            +C+    + T+ +PY  + L
Sbjct: 729  SCKIGDNISTMKLPYACKLL 748



 Score = 43.9 bits (102), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 33/68 (48%), Gaps = 2/68 (2%)

Query: 409 AERLNFLRFISFFRAVHR-GASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHM 466
           ++ L  L FIS    V R    F   R  S  R L P  WG LCP  TP+GE CGL+ ++
Sbjct: 64  SQVLARLSFISTMGHVTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNL 123

Query: 467 TSTCRVAS 474
                V +
Sbjct: 124 ALMTHVTT 131


>gi|320166143|gb|EFW43042.1| DNA-directed RNA polymerase II subunit RPB2 [Capsaspora owczarzaki
            ATCC 30864]
          Length = 1729

 Score =  328 bits (841), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 294/1090 (26%), Positives = 488/1090 (44%), Gaps = 151/1090 (13%)

Query: 36   DHCRQAKISYTGKLMADVE---FQYLDAG---SPVVR--ERFNFGQFPVMLKTRRCHLQG 87
            +  R   ++Y  +L  +++   F+Y + G    P V+  ++   GQ P+ML+++ C L  
Sbjct: 123  NEARLRNLTYACRLYVNLKREMFRYDENGVEEPPEVKILDKVYLGQIPMMLRSKNCALFN 182

Query: 88   ADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAV 147
                +L  + E   + GGYF++NG E+V    ++ ++    + V    R     Y+  A 
Sbjct: 183  KKDYELEKMNECPYDQGGYFVINGSEKV----LIAQERMANNNVYVFHRKPPAKYSYVAE 238

Query: 148  VIRCVRK-DQSSVTLKLYYLLNGSV-------RLGFWLQGKEYLLPVGIVLKALVDTNDL 199
            +   +    + + TL    L  G         R+   L   +  +P+ +V +AL   +D 
Sbjct: 239  IRSALETGHRPANTLYTKMLTRGQSKGESAGNRIQCTLPYIKTDIPIVVVFRALGFVSDR 298

Query: 200  EIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVI 259
            ++ +H+   Y ++            + E ++  L E   L +  +   L  IG+  + ++
Sbjct: 299  DVLDHVIYDYQDQE-----------MMEMLRFSLEEA--LPIQEQPVALDFIGK--RGLV 343

Query: 260  DGLQSESYYAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
             G   E+    A+ +++  +  H+    +    K     +++ +L          D+ D 
Sbjct: 344  QGATRENRIRYAKEILQKELLPHVGVTDHSETKKAYFFGYIVHRLLQAALGRRELDDRDH 403

Query: 316  LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPS 375
              N+   L G L+    +      ++  K  +Q +++   K+ +F  LA  K       +
Sbjct: 404  YGNKRCDLAGALVGGLFRLLFRKLIKDVKASLQKDVD---KRHEFNLLAAFK-------A 453

Query: 376  KQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
            K I   +   L TG          + RAG +    RL +   +S  R ++      G + 
Sbjct: 454  KIISDGLRYSLATGNWGDAKKAH-ESRAGVSQVLNRLTYASTLSHLRRLNSPIGREG-KL 511

Query: 436  TSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV 495
               R+L    WG +CP  TP+G+ CGL+ ++     ++    +   I    +  T     
Sbjct: 512  AKPRQLQNTQWGVMCPAETPEGQACGLVKNLALMAYISVGSPALHIIEFLEEWATE---- 567

Query: 496  LIGVGMIPSLPKLVKSGPPAVLS---VLLDGRVVGV-IPSSEIEKVVAHLR-RLKVSAA- 549
                        L ++ P ++L    + ++G  VG+   ++E+ + +A LR R  +S   
Sbjct: 568  -----------NLEETTPQSILQSTKIFVNGCWVGIHAQANELVRTLAQLRQRTDISPEI 616

Query: 550  SVIPDDLEVGYVPLSLGG-AYPGLYLFTSPPKFVR-----PVRNISLPSEESQNI----- 598
            S++PD  E      S  G A   L++       +R      ++  +      ++I     
Sbjct: 617  SIVPDIRERELRIYSDAGRAMRPLFVVEDERLSIRREHIDALKQAAQADRAGEHIDNPMR 676

Query: 599  --ELIGP---------FEQVFMEIRCPDGGDGGRRNAFPA-----THEEIHPTGMLSVVA 642
              ELI            E+  M    P+  D  RR    A     TH EI+P  +L V A
Sbjct: 677  WPELITTGVIEYIDTQEEETRMIAMHPEDLDYARREGRGAYCSTHTHCEINPAMILGVCA 736

Query: 643  NLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYG 702
            ++ P+ DHNQSPRN YQ  M KQ MG  +   + R D   + L  PQ P+  T +     
Sbjct: 737  SIIPFPDHNQSPRNCYQSAMGKQAMGVYISNFQVRLDTMSHTLYYPQKPLTTTRSMEYLH 796

Query: 703  IDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRG 762
             D  P G NAIVA+  Y+GY+ ED++++N+S++DRG+     Y++   ++   G  +D G
Sbjct: 797  FDSLPAGMNAIVAISVYSGYNQEDSVVMNQSAIDRGLFRSLFYRSYKDEVKPAG--LDVG 854

Query: 763  QKLFRRNKDA------KSLHSVIDSDGLPYVGQMIHPGEPY-----CSIYDKTTNSWRTN 811
             + F +           S +  +D+DGL   G  +  G+ +       I D+     +T 
Sbjct: 855  DEEFEKPSLEIVAGMRHSSYDKLDADGLVAPGTRV-SGDDFIIGKTTPIPDEKNELAQTM 913

Query: 812  SR----------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQK 861
             R          + +E+  VD V + +    +  +   +R R  R P IGDKF+SRHGQK
Sbjct: 914  KRYRKRDASTALRSTENGIVDTVMLSVNEDGH--RFVKVRVRGIRIPQIGDKFASRHGQK 971

Query: 862  GVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATP 921
            G C   +   DMP++   G+ PD+IINPHA PSRMTI  L+E +  K  +L GK  DATP
Sbjct: 972  GTCGITYRQEDMPYNA-EGITPDIIINPHAIPSRMTIGHLIECLQGKVAALTGKIGDATP 1030

Query: 922  FANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYH--GVEVLYSGVYGTELTCEIFIGP 979
            F   V            KS+ D L E      F YH  G EVL++G  G ++  +++ GP
Sbjct: 1031 FNTDVT----------VKSIADLLKE------FRYHPYGNEVLFNGHTGKKMNTQVYFGP 1074

Query: 980  VYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSL-------LAHG 1032
             YYQRL+HMV DK   R  G +  +TRQP++GR R GG+RFGEMERD L       LA G
Sbjct: 1075 TYYQRLKHMVDDKIHSRQRGPLTNLTRQPVEGRARDGGLRFGEMERDCLHGDARVTLATG 1134

Query: 1033 AAYLLHDRLH 1042
             +  + D +H
Sbjct: 1135 VSMRIRDLVH 1144



 Score = 46.6 bits (109), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 18/94 (19%)

Query: 1026 DSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPK 1085
            + ++AHGAA  L +RL   SD+    VC +CG +  A                       
Sbjct: 1639 NCMIAHGAAQFLRERLFEQSDFSRVHVCDICGLIAIANL------------------KKN 1680

Query: 1086 KVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
            +  C AC+    +  + +PY  + L  EL +M+I
Sbjct: 1681 EFECRACRNKTQISQIFLPYAAKLLFQELMSMSI 1714


>gi|336121473|ref|YP_004576248.1| DNA-directed RNA polymerase subunit B [Methanothermococcus
            okinawensis IH1]
 gi|334855994|gb|AEH06470.1| DNA-directed RNA polymerase subunit B [Methanothermococcus
            okinawensis IH1]
          Length = 611

 Score =  328 bits (840), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 197/517 (38%), Positives = 277/517 (53%), Gaps = 43/517 (8%)

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH EI P  +L + A + PY +HN +PR      M KQ++G  +  LK R D K + L  
Sbjct: 123  THLEIDPMSILGIGAGVAPYPEHNSAPRITMAAAMGKQSLGIPMSNLKLRMDTKGHLLHY 182

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
            PQ PIVRT      G D+ P G N +VAV++Y GY+MEDA I NK+S++RG+     +++
Sbjct: 183  PQVPIVRTKHQEILGFDKRPAGQNFVVAVMSYEGYNMEDAFIFNKASIERGLGRSSFFRS 242

Query: 748  -ETIDLSDDGNKVDRGQ--KLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCS----- 799
             E  +    G ++DR +  +   R   A+  +  +  DG+  V   +  G+         
Sbjct: 243  YEGFEKRYPGGQLDRFEVPEQGVRGYRAEEAYRNLGDDGIVEVESEVKSGDVIIGKTSPP 302

Query: 800  -IYDKTTNSWRTNSRKGSESVFVDYV------AVDMKNSKNLPQKANIRFRHTRNPIIGD 852
               ++   S RT S++   SV V +       +V +  +K   + A IR R  R P +GD
Sbjct: 303  RFLEEQDISLRTKSQRRDTSVTVRHGEGGIVDSVILSETKEGNRLAKIRVRDVRIPELGD 362

Query: 853  KFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSL 912
            KF+SRHGQKGV   + P  DMPF+   G+ PDLIINPHA PSRMTI  +LE +  K G+L
Sbjct: 363  KFASRHGQKGVIGLIVPQEDMPFT-ENGVFPDLIINPHAIPSRMTIGQVLEMIGGKVGAL 421

Query: 913  HGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELT 972
              + +D T F+       G+   D        L E L   GF +HG EV+Y G  G +L 
Sbjct: 422  ECRRVDGTIFS-------GEKEWD--------LRETLEKYGFKHHGKEVMYDGKTGKKLE 466

Query: 973  CEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHG 1032
            CEIF+G  YYQ+L H+V+ K   RS G +  +TRQP +GR R GG+RFGEMERD L+ HG
Sbjct: 467  CEIFVGIAYYQKLHHLVAGKIHARSRGPIQVLTRQPTEGRAREGGLRFGEMERDVLIGHG 526

Query: 1033 AAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHAC 1092
            AA LL +RL   SD +   +CS CG +     I+  KR I+          P        
Sbjct: 527  AALLLKERLFDESDPYECYICSKCGEIA----IYDHKRGIK--------YCPVCGETEDI 574

Query: 1093 QTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGDGA 1129
            Q+++ +  V +PY F+ L  EL +M I   ++L D A
Sbjct: 575  QSNRKIPPVNLPYAFKLLLDELRSMGINPKMELKDRA 611


>gi|408388464|gb|EKJ68148.1| hypothetical protein FPSE_11615 [Fusarium pseudograminearum CS3096]
          Length = 1157

 Score =  328 bits (840), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 192/524 (36%), Positives = 269/524 (51%), Gaps = 67/524 (12%)

Query: 627  ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQ 686
             TH EI P  +L  VA L P+  HNQSPRN YQC M KQ +G        R D  LY L 
Sbjct: 672  TTHLEIEPFTVLGAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLV 731

Query: 687  TPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQ 746
             PQ P+V + T    G D+ P G NA V V++Y+GYD+EDA++LNK+SVDRG    Q+++
Sbjct: 732  YPQRPMVISKTIQLIGYDKLPAGQNATVVVMSYSGYDIEDALVLNKASVDRGFGRCQVFR 791

Query: 747  TETIDLSD--DGNKVDRGQKLFR---RNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSI- 800
              T +L    +G +   G        +NK   + H  +D DGL  VG  +H GE      
Sbjct: 792  KYTTELQKYPNGRRERIGDPEMEGEGKNKRRITKHEALDDDGLAIVGYKVHSGEAMVKKE 851

Query: 801  -----------YDKTTNSWRTN--SRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRN 847
                        D+    +R +  S + ++  ++D V +          K  ++ R TR 
Sbjct: 852  TPLDQTSTGIGLDRGPGEFRDSSVSYRIADPAYIDKVMISQTEKDTTVIK--VQTRQTRR 909

Query: 848  PIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAA 907
            P +GDKFSSRHGQKGV   +    D+PFS  +G+ PD+I+NPH FPSRMT+  LLE +  
Sbjct: 910  PELGDKFSSRHGQKGVVGIIVEQEDLPFSD-SGLSPDIIMNPHGFPSRMTVGKLLECLTG 968

Query: 908  KGGSLHGK----FMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLY 963
            K   +HG+    F DA                      ++E+ ++L   GF++ G +   
Sbjct: 969  KASIIHGRPDYGFGDAF-----------------RSHPLEEMSQVLVDHGFSWEGKDYFT 1011

Query: 964  SGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEM 1023
            SG+ G  L   +F GP+YYQRL+HMV DK   RS G    +TRQP +GR R GG+R GEM
Sbjct: 1012 SGITGEPLEAYVFNGPIYYQRLKHMVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEM 1071

Query: 1024 ERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARA 1083
            ERD L+A+GA+ LL +RL   SD    D+C  CG      +                   
Sbjct: 1072 ERDCLIAYGASQLLLERLMISSDGTEIDICQQCGLFGYKGY------------------- 1112

Query: 1084 PKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
                 CH C++++ +  + MPY  + L  EL +MN+ + LQ+ D
Sbjct: 1113 -----CHTCKSTREVTKMTMPYAAKLLVQELISMNVGVRLQMDD 1151



 Score =  105 bits (263), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 104/452 (23%), Positives = 191/452 (42%), Gaps = 49/452 (10%)

Query: 38  CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
           CR   ++Y   +  D+  QY+     +VR+    G+ PVMLK+  C L GA++ K+  + 
Sbjct: 109 CRLRDMTYAAPISVDI--QYIRDKQRIVRKNVPLGRMPVMLKSSICRLGGANNTKMEEMN 166

Query: 98  EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
           E   + GGYFI+ G E+    VIL ++    + +     ++    +         RK ++
Sbjct: 167 ECPLDPGGYFIIGGTEK----VILIQEQLSKNRIIVEADEKNNIISASVTSSTHERKSKT 222

Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
            VTLK   +L   +     ++G    +P+ I+LKAL   +D+EI   L    D +Y+ E 
Sbjct: 223 YVTLKKDRIL---LTHNVLVEG----IPIVIILKALGGLSDMEIM-QLVAGSDGRYQDE- 273

Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEH---------FQPVIDGLQSESYY 268
                        +   E   + + T+ Q L++IG           F P +     E   
Sbjct: 274 -----------FLVNFDEATKVGVFTQHQALEYIGTRVKMAPRRGIFGPQVRRNHVEEGL 322

Query: 269 AVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
                ++  ++ +   D   K   +  M +++     +  + D+ D + N+ + L G L+
Sbjct: 323 DALANLVIAHVPIEGLDFYPKAIYVAMMTRRVLIAAHNPKLVDDRDFVGNKRLELAGQLL 382

Query: 329 TIYLKEKLEDWLRKGKKLIQDEIENNGKK--FDFFNLANIKKVMEKNPSKQIGTSIETML 386
           ++  ++  + +    +  I   ++ N +    D  N       M  N +  IG  I   +
Sbjct: 383 SLLFEDLFKQFTTNVRMSIDKFLKKNNRAVPLDAVN-------MISNHANNIGYGINRAI 435

Query: 387 KTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPES 445
           +TG    +   ++  RAG T    RL+++  +     +   + F   R  S  R L P  
Sbjct: 436 QTGNWNVKR-FNM-NRAGVTHVLSRLSYIAALGMMTRI--SSQFEKTRKVSGPRALQPSQ 491

Query: 446 WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYD 477
           WG LC   TP+GE CGL+ ++     + +  D
Sbjct: 492 WGMLCTSDTPEGEACGLVKNLALMTHITTNVD 523


>gi|67810558|gb|AAY81998.1| RNA polymerase II second largest subunit [Spirogyra sp. UWCC FW670]
          Length = 670

 Score =  327 bits (839), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 192/509 (37%), Positives = 263/509 (51%), Gaps = 55/509 (10%)

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH EIHP+ +L V A++ P+ DHNQSPRN YQ  M KQ MG  V   + R D   Y L  
Sbjct: 185  THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYILYY 244

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
            PQ P+V T         E P G NAIVA+  Y+GY+ ED++I+N+SS+DRG      Y++
Sbjct: 245  PQKPLVTTRAMEHLHFRELPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFHRSIFYRS 304

Query: 748  ETIDLSDDGNKVDRGQKLFRRNKDAKS-----LHSVIDSDGLPYVGQMIH---------- 792
               +    G      ++  + N+D  S      +  +DSDG+   G  +           
Sbjct: 305  YRDEEKKQGTLTK--EEFEKPNRDITSGMRHGSYDKLDSDGIAPPGTRVAGEDVIIGKTM 362

Query: 793  --PGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPII 850
              P +   +   + T   ++ + + SES  +D V + + N     +   IR R  R P I
Sbjct: 363  PLPQDDSGTQAQRFTKRDQSTTLRHSESGMIDQVILTINNDGF--RFVKIRVRSIRIPQI 420

Query: 851  GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGG 910
            GDKF+SRHGQKG     +   DMPFS   G+ PDL++NPHA PSRMTI  L+E +  K  
Sbjct: 421  GDKFASRHGQKGTIGMTYTQEDMPFSQ-EGISPDLVVNPHAIPSRMTIGHLIECLMGKVA 479

Query: 911  SLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTE 970
            +L GK  DATPF +                 VD +   L +CG+   G EV+Y+G  G +
Sbjct: 480  ALMGKEGDATPFTDVT---------------VDSISRALHSCGYQMRGFEVMYNGHTGRK 524

Query: 971  LTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLA 1030
            L   IF+GP YYQRL+HMV DK   R  G +  +TRQP +GR R GG+RFGEMERD ++A
Sbjct: 525  LQAHIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 584

Query: 1031 HGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCH 1090
            HGAA+ L +RL   SD +   VC  CG +  A      K++  E              C 
Sbjct: 585  HGAAHFLKERLFDQSDAYRVHVCEHCGLIANANL----KKSFFE--------------CR 626

Query: 1091 ACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
             C+    +  V +PY  + L  EL +M I
Sbjct: 627  GCKNKTDIVQVHIPYACKLLFQELMSMAI 655


>gi|320592188|gb|EFX04627.1| DNA-dependent RNA polymerase 2 rpb140 [Grosmannia clavigera kw1407]
          Length = 1266

 Score =  327 bits (839), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 196/509 (38%), Positives = 268/509 (52%), Gaps = 52/509 (10%)

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH EIHP+ +L + A++ P+ DHNQSPRN YQ  M KQ MGF +     R D     L  
Sbjct: 779  THCEIHPSMLLGICASIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYPRRMDTMANVLYY 838

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
            PQ P+  T +       E P G NAIVA+L Y+GY+ ED++I+N+SS+DRG+     ++ 
Sbjct: 839  PQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLFFRA 898

Query: 748  ETIDLSDDG-NKVDRGQKLFRRN--KDAKSLHSVIDSDGL--PYV---GQMIHPGEPYCS 799
             T      G N V+  +K FR +  +     +  +D DG+  P V   G+ I  G+    
Sbjct: 899  YTDSEKRVGINFVETFEKPFRSDTLRLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTSPI 958

Query: 800  IYDKTTNSWRTNSR---------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPII 850
              D      RT +          + +ES  +D V V   N  NL +   +R R T+ P I
Sbjct: 959  NPDHQEMGQRTQAHVKRDASTPLRSTESGIIDQVVV-TTNQDNL-RYVKVRVRTTKIPQI 1016

Query: 851  GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGG 910
            GDKF+SRHGQKG     +   DMPF+   G+ PD+IINPHA PSRMTIA L+E + +K  
Sbjct: 1017 GDKFASRHGQKGTIGVTYRSEDMPFT-TEGILPDIIINPHAIPSRMTIAHLIECLLSKVA 1075

Query: 911  SLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTE 970
            +L G   DATPF +                 VD +  +LR  G+   G E++Y G  G +
Sbjct: 1076 TLKGMEGDATPFTDVT---------------VDSVSGLLREHGYQSRGFEIMYHGHTGRK 1120

Query: 971  LTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLA 1030
            L  ++F GP YYQRLRHMV DK   R+ G +  +TRQP++GR R GG+RFGEMERD ++A
Sbjct: 1121 LRAQVFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIA 1180

Query: 1031 HGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCH 1090
            HGAA  L +RL   SD +   +C +CG +     +  Q                    C 
Sbjct: 1181 HGAAAFLKERLFEVSDAYRVHICEICGLMTPIANLTKQ-----------------SFECR 1223

Query: 1091 ACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
             C+    +  V +PY  + L  ELAAMNI
Sbjct: 1224 PCKNKTRIAQVQIPYAAKLLFQELAAMNI 1252



 Score = 84.7 bits (208), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 98/419 (23%), Positives = 169/419 (40%), Gaps = 50/419 (11%)

Query: 71  FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSM 130
            G+ P+M+K++ CHL   D   L  L E   + GGYFI+NG E+V     L  Q    + 
Sbjct: 194 MGRLPIMVKSKICHLAYEDEDGLFLLNECPYDQGGYFIINGSEKV-----LIAQERSAAN 248

Query: 131 VRSSFRDRREGYTDKAVVIRCVRKDQSSV--TLKLYYLLNGSVRLGFWLQGKE----YL- 183
           +   F+  +         IR   +  S +  +L +  +  G    G + Q       Y+ 
Sbjct: 249 IVQVFKKAQPSKFSYTAEIRSALEKGSRLISSLSIMLVAKGDTGRGSFGQTVHTTLPYIK 308

Query: 184 --LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSL 241
             LP+ +V +AL   +D +I NH+  CYD +   +   +  P + E   I   EV     
Sbjct: 309 SELPIAVVFRALGVVSDEDILNHI--CYD-RNDSQMLEMLRPCIEEAFCIQDREV----- 360

Query: 242 TTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNND----KFNLLIFML 297
                 L  IG+  Q    G+  +     A  +++  +  H++ +      K   L +M+
Sbjct: 361 -----ALDFIGKRGQNS-HGISRKDRVRAARDILQKEMLPHISQSEGCETRKAFFLGYMV 414

Query: 298 QKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIE---NN 354
            KL          D+ D    + + L G L    L +     +RK  + + + ++   + 
Sbjct: 415 HKLLQCALGRRDVDDRDHFGKKRLDLAGSL----LAKLFRGIIRKMYQELMNHLKRCVDT 470

Query: 355 GKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNF 414
           GK FD      I+        + +   ++  L TG    Q    +   AG +    R  F
Sbjct: 471 GKHFDL--RVGIRH-------QTLTNGLKYSLATGNWGDQKKA-MSSTAGVSQVLNRYTF 520

Query: 415 LRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVA 473
              +S  R  +      G +    R+L    WG +CP  TP+G+ CGL+ +++  C V+
Sbjct: 521 SSTLSHLRRTNTPIGRDG-KLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVS 578


>gi|66356143|gb|AAY45706.1| RNA polymerase IV second largest subunit [Zea mays]
          Length = 1170

 Score =  327 bits (839), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 309/1171 (26%), Positives = 511/1171 (43%), Gaps = 206/1171 (17%)

Query: 37   HCRQAKISYTGKLMADVEFQYLD--------AGSPVVRERFNF---------GQFPVMLK 79
            H R   ++Y  +L+ +V  Q            G+    ++ NF         G  PVM+K
Sbjct: 119  HARLQNMTYASRLIVEVTIQVYSLEKSDKSKTGNDGFVQKRNFMNETHWIFIGLLPVMVK 178

Query: 80   TRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVF---------RSVILPKQNYPMSM 130
            +  C L   +  + +       + GGYF++ G+E+VF         R  I  +  + +S 
Sbjct: 179  SNLCLLHSLNESECL------FDAGGYFLVKGMEKVFIAQEQRCLRRLWISDRPCWTISF 232

Query: 131  VRSSFRDRREGYTDKAVVIRCVRKDQSS-------VTLKLYYLLNGSVRLGFWLQGKEYL 183
            + S  + RR       + I+ V   +S        +T+   Y                  
Sbjct: 233  M-SEIKRRR-------IYIKLVESTRSEDFSESKIITISFLYAT---------------- 268

Query: 184  LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTT 243
            +PV +   AL  ++D E+F+ +         ++  A     +S  +K      +D   + 
Sbjct: 269  MPVWLXXFALGISSDKEVFDMIXM-------QDCDASVINTISATIKESDKLCEDFRKSD 321

Query: 244  RLQCLQHIGEHFQPVIDGLQSESYYAVAETV---IRDYIFVHLNDNNDKFNLLIFMLQKL 300
            + +            +D L   S +  AE+    I  ++F  ++ N +K   L +M++ L
Sbjct: 322  KAR----------QYVDELVKSSRFPPAESFDDYIARFLFPDISGNRNKALFLGYMVKCL 371

Query: 301  FSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDF 360
                      DN D  +N+ + LPG L+   L+ +L    ++  K IQ ++ ++ +  D 
Sbjct: 372  LMAFTGKRKCDNKDDFRNKRLDLPGELLGRELRAQLRLAEKRMVKAIQRDLNSDRELQDL 431

Query: 361  FNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRA----GYTVQAERLNFLR 416
                           + I  SI T       +T +     +RA    G      R N L+
Sbjct: 432  --------------ERYIDASIVTNGLNRAFSTGSWCHPYKRAERCSGIVATLRRTNPLQ 477

Query: 417  FISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYY 476
             +S  R   +  ++AG +    R   P  WG LC + TPDGE CGL+ ++  T  V+S  
Sbjct: 478  MMSDLRKTRQRVAYAG-KAGDARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTAIVSS-- 534

Query: 477  DSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEK 536
                      ++   ++   I  GM   L  +       +  + L+G  VG   +S    
Sbjct: 535  ----------RVMQPLIESFISCGM-SKLNDIPTEHIQRMDKIFLNGNWVGSCENSA--S 581

Query: 537  VVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV----------- 585
             V  LR ++ S  S+I   +E+          +  + +FT   + +RP+           
Sbjct: 582  FVFRLRCMRRS--SLIDPQVEI-----KRDKHHNEVRVFTDAGRILRPLLVVENLNKIRK 634

Query: 586  ---RNISLPSEESQNI-ELIGPFEQVFMEIRCPDGGDGGRRNAFPA-------THEEIHP 634
               R+ S      Q I E IG  E+   +I+C      G R+ F +       TH E+ P
Sbjct: 635  PKGRSFSFHELMQQEIIEFIGVEEE--EDIQCA----WGIRHLFESEGAISSYTHCELDP 688

Query: 635  TGMLSVVANLTPYSDHNQSPRNMYQCQM-AKQTMGFSVQALKFRADQKLYHLQTPQTPIV 693
            + +L +   + P+++HN + R +YQ +  ++Q +G+S      R D   + L  PQ P+ 
Sbjct: 689  SFLLGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNPHIRVDTLSHQLYYPQRPLF 748

Query: 694  RT--------NTYTKYGID------EYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGM 739
            +T        + Y  +G        EY  G NAIVAV  + G++ ED++++N++S++RGM
Sbjct: 749  KTVIADCLGRSDYASFGRKNDFARPEYFNGQNAIVAVNVHQGFNQEDSLVMNRASLERGM 808

Query: 740  CHGQIYQTETIDLSD-DGNK-VDRGQKL-FRRNKDAKSLHSVIDSDGLPYVGQMIHPGEP 796
               +  ++   D+ + DG K +   +K+ F + +  +     +D DGLPYVG  +   + 
Sbjct: 809  FRTEHLRSYKADVENKDGTKRLKLKEKIDFGKTESKRGRXDNLDDDGLPYVGASLQTNDI 868

Query: 797  YCSIYDKTTNSWRTNS--RKGSESVFVDYVAVDMKNS-KNLPQKANIRFRHTRNPIIGDK 853
               +  K + S   +S   K +E   V  V +   +  KN    A +  R  R P +GDK
Sbjct: 869  ---VIGKVSESGEDHSIKLKHTEKGMVQKVLLSANDEGKNF---AVVTLRQVRTPCLGDK 922

Query: 854  FSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLH 913
            FSS HGQKGV   L    + PF+   G+ PD++INPHAFP+R T   LLE+   KG +  
Sbjct: 923  FSSMHGQKGVVGFLESQENFPFTH-EGIVPDIVINPHAFPTRQTPGQLLEAALGKGIACK 981

Query: 914  GKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTC 973
            G    ATPF  +                VD + E L   G++  G E + +G  G  +  
Sbjct: 982  GTMRYATPFTTAS---------------VDVIAEQLHRAGYSRWGSENVLNGRTGERVQS 1026

Query: 974  EIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGA 1033
             +F+GP +YQRL HM  DK + R+TG +  +TRQP+  RKR GG++FGEMERD LLAHG+
Sbjct: 1027 LVFMGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGS 1086

Query: 1034 AYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQ 1093
            A  LH+RL   SD+    +C  C  V            +R + G    R P    C  C+
Sbjct: 1087 AANLHERLFLLSDFSQMHICQTCERVANVV--------MRSVPGGKKIRGP---YCGFCK 1135

Query: 1094 TSKGMETVAMPYVFRYLAAELAAMNIKITLQ 1124
            +S+ +  + +PY  + L  EL +M I +  +
Sbjct: 1136 SSENIVRINVPYGAKLLYQELFSMGICLKFE 1166


>gi|298566250|ref|NP_001177299.1| required to maintain repression7 [Zea mays]
 gi|283443696|gb|ADB19857.1| required to maintain repression 7/RNA polymerase D second largest
            subunit [Zea mays]
 gi|297185477|gb|ADI24118.1| RPD2/E2a [Zea mays]
 gi|414585188|tpg|DAA35759.1| TPA: putative DNA-directed RNA polymerase subunit family protein [Zea
            mays]
          Length = 1229

 Score =  327 bits (839), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 309/1171 (26%), Positives = 512/1171 (43%), Gaps = 206/1171 (17%)

Query: 37   HCRQAKISYTGKLMADVEFQYLD--------AGSPVVRERFNF---------GQFPVMLK 79
            H R   ++Y  +L+ +V  Q            G+    ++ NF         G  PVM+K
Sbjct: 178  HARLQNMTYASRLIVEVTIQVYSLEKSDKSKTGNDGFVQKRNFMNETHWIFIGLLPVMVK 237

Query: 80   TRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVF---------RSVILPKQNYPMSM 130
            +  C L   +  + +       + GGYF++ G+E+VF         R  I  +  + +S 
Sbjct: 238  SNLCLLHSLNESECL------FDAGGYFLVKGMEKVFIAQEQRCLRRLWISDRPCWTISF 291

Query: 131  VRSSFRDRREGYTDKAVVIRCVRKDQSS-------VTLKLYYLLNGSVRLGFWLQGKEYL 183
            + S  + RR       + I+ V   +S        +T+   Y                  
Sbjct: 292  M-SEIKRRR-------IYIKLVESTRSEDFSESKIITISFLYAT---------------- 327

Query: 184  LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTT 243
            +PV ++  AL  ++D E+F+ +         ++  A     +S  +K      +D   + 
Sbjct: 328  MPVWLLFFALGISSDKEVFDMIDM-------QDCDASVINTISATIKESDKLCEDFRKSD 380

Query: 244  RLQCLQHIGEHFQPVIDGLQSESYYAVAETV---IRDYIFVHLNDNNDKFNLLIFMLQKL 300
            + +            +D L   S +  AE+    I  ++F  ++ N +K   L +M++ L
Sbjct: 381  KAR----------QYVDELVKSSRFPPAESFDDYIARFLFPDISGNRNKALFLGYMVKCL 430

Query: 301  FSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDF 360
                      DN D  +N+ + LPG L+   L+ +L    ++  K IQ ++ ++ +  D 
Sbjct: 431  LMAFTGKRKCDNKDDFRNKRLDLPGELLGRELRAQLRLAEKRMVKAIQRDLNSDRELQDL 490

Query: 361  FNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRA----GYTVQAERLNFLR 416
                           + I  SI T       +T +     +RA    G      R N L+
Sbjct: 491  --------------ERYIDASIVTNGLNRAFSTGSWCHPYKRAERCSGIVATLRRTNPLQ 536

Query: 417  FISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYY 476
             +S  R   +  ++AG +    R   P  WG LC + TPDGE CGL+ ++  T  V+S  
Sbjct: 537  MMSDLRKTRQRVAYAG-KAGDARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTAIVSS-- 593

Query: 477  DSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEK 536
                      ++   ++   I  GM   L  +       +  + L+G  VG   +S    
Sbjct: 594  ----------RVMQPLIESFISCGM-SKLNDIPTEHIQRMDKIFLNGNWVGSCENSA--S 640

Query: 537  VVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV----------- 585
             V  LR ++ S  S+I   +E+          +  + +FT   + +RP+           
Sbjct: 641  FVFRLRCMRRS--SLIDPQVEI-----KRDKHHNEVRVFTDAGRILRPLLVVENLNKIRK 693

Query: 586  ---RNISLPSEESQNI-ELIGPFEQVFMEIRCPDGGDGGRRNAFPA-------THEEIHP 634
               R+ S      Q I E IG  E+   +I+C      G R+ F +       TH E+ P
Sbjct: 694  PKGRSFSFHELMQQEIIEFIGVEEE--EDIQCA----WGIRHLFESEGAISSYTHCELDP 747

Query: 635  TGMLSVVANLTPYSDHNQSPRNMYQCQM-AKQTMGFSVQALKFRADQKLYHLQTPQTPIV 693
            + +L +   + P+++HN + R +YQ +  ++Q +G+S      R D   + L  PQ P+ 
Sbjct: 748  SFLLGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNPHIRVDTLSHQLYYPQRPLF 807

Query: 694  RT--------NTYTKYGID------EYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGM 739
            +T        + Y  +G        EY  G NAIVAV  + G++ ED++++N++S++RGM
Sbjct: 808  KTVIADCLGRSDYASFGRKNDFARPEYFNGQNAIVAVNVHQGFNQEDSLVMNRASLERGM 867

Query: 740  CHGQIYQTETIDLSD-DGNK-VDRGQKL-FRRNKDAKSLHSVIDSDGLPYVGQMIHPGEP 796
               +  ++   D+ + DG K +   +K+ F + +  +     +D DGLPYVG  +   + 
Sbjct: 868  FRTEHLRSYKADVENKDGTKRLKLKEKIDFGKTESKRGRVDNLDDDGLPYVGASLQTNDI 927

Query: 797  YCSIYDKTTNSWRTNS--RKGSESVFVDYVAVDMKNS-KNLPQKANIRFRHTRNPIIGDK 853
               +  K + S   +S   K +E   V  V +   +  KN    A +  R  R P +GDK
Sbjct: 928  ---VIGKVSESGEDHSIKLKHTEKGMVQKVLLSANDEGKNF---AVVTLRQVRTPCLGDK 981

Query: 854  FSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLH 913
            FSS HGQKGV   L    + PF+   G+ PD++INPHAFP+R T   LLE+   KG +  
Sbjct: 982  FSSMHGQKGVVGFLESQENFPFTH-EGIVPDIVINPHAFPTRQTPGQLLEAALGKGIACK 1040

Query: 914  GKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTC 973
            G    ATPF  +                VD + E L   G++  G E + +G  G  +  
Sbjct: 1041 GTMRYATPFTTAS---------------VDVIAEQLHRAGYSRWGSENVLNGRTGERVQS 1085

Query: 974  EIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGA 1033
             +F+GP +YQRL HM  DK + R+TG +  +TRQP+  RKR GG++FGEMERD LLAHG+
Sbjct: 1086 LVFMGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGS 1145

Query: 1034 AYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQ 1093
            A  LH+RL   SD+    +C  C  V            +R + G    R P    C  C+
Sbjct: 1146 AANLHERLFLLSDFSQMHICQTCERVANVV--------MRSVPGGKKIRGP---YCGFCK 1194

Query: 1094 TSKGMETVAMPYVFRYLAAELAAMNIKITLQ 1124
            +S+ +  + +PY  + L  EL +M I +  +
Sbjct: 1195 SSENIVRINVPYGAKLLYQELFSMGICLKFE 1225


>gi|29788820|gb|AAP03366.1| putative RNA polymerase III [Oryza sativa Japonica Group]
          Length = 1174

 Score =  327 bits (839), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 206/522 (39%), Positives = 275/522 (52%), Gaps = 55/522 (10%)

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH EI P  +L VVA L PY  HNQSPRN YQC M KQ MG       FRAD  LY L  
Sbjct: 687  THIEIEPLTILGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLFRADSLLYLLVY 746

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
             Q P++ T T    G D+   G NA VAV++Y+GYD+EDA+++NKSS+DRG       + 
Sbjct: 747  AQRPLLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIAMKK 806

Query: 748  ETIDLSD-DGNKVDRGQKLFRRNKDAKSLHS---VIDSDGLPYVGQMIHPGEPYCSIYDK 803
             T+     +G   DR  K  +R+KD   L      +D DG    G +I   + Y  +  +
Sbjct: 807  YTVTKEKYEGGYSDRIVKP-QRDKDGALLKQNMRALDEDGFAAPGLIIRNHDIY--VNKQ 863

Query: 804  TTNSWRTNS---------------RKG--SESVFVDYVAVDMKNSKNLPQKANIRFRHTR 846
            T  + + +S                KG   E+  VD V +     + L  K  I  RHTR
Sbjct: 864  TPRNTKRDSGAHLTDRDYKDSPAVYKGVDGETTVVDRVMLCSDTDEKLIIKCII--RHTR 921

Query: 847  NPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVA 906
             P +GDKFSSRHGQKGVC  +    D PFS   G+ PDLI+NPH FPSRMTI  ++E + 
Sbjct: 922  RPEVGDKFSSRHGQKGVCGTIVQQEDFPFSE-RGICPDLIMNPHGFPSRMTIGKMIELLG 980

Query: 907  AKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGV 966
             K G   G+F   + F       N D   D S++LV          GF+Y+G ++LYSG+
Sbjct: 981  GKAGVSCGQFHYGSAFGEP--SGNADKVEDISRTLVKH--------GFSYNGKDLLYSGI 1030

Query: 967  YGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERD 1026
             G      +F+GP+YYQ+L+HMV DK   R++G    +TRQP +GR R GG+R GEMERD
Sbjct: 1031 LGHPCQAYVFMGPIYYQKLKHMVLDKMHARASGPRVLLTRQPTEGRSRDGGLRLGEMERD 1090

Query: 1027 SLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKK 1086
             L+A+GA+ L+ +RL   SD +   VC  CG  L   + H  K +               
Sbjct: 1091 CLIAYGASMLIFERLLISSDPYQVQVCRKCG--LLGYYNHKLKASY-------------- 1134

Query: 1087 VTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGDG 1128
              C  C+  + M  + MPY  + L  EL AMN+   L+L +G
Sbjct: 1135 --CSMCKNGENMAKMRMPYACKLLFQELQAMNVVPRLKLTEG 1174



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 109/521 (20%), Positives = 201/521 (38%), Gaps = 107/521 (20%)

Query: 9   FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
           F  +R LV+ HI+SF+Y + +G+  +                                  
Sbjct: 63  FLKVRGLVKEHIDSFNYFITKGIRNIVKANNRIEARNNPSIFLRYNSVRVGVPSVQVQYI 122

Query: 37  -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
                   CR    +Y+  ++AD+E+          +  F  G  P+ML++  C L G D
Sbjct: 123 AEKITPHFCRLTDRTYSAPVLADIEYTVGKQYELKRKPNFIIGYLPIMLRSHACVLNGKD 182

Query: 90  SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
             +L    E   + GGYFI+ G E+V   +++ +Q     ++  +          K  VI
Sbjct: 183 EAELARYGECPLDPGGYFIVKGTEKV---ILIQEQLSKNRIIIDT--------DSKGRVI 231

Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--LPVGIVLKALVDTNDLEIFNHLTC 207
             V      +  K    +    +   +LQ  ++   +P+ +V+KA+   +D E+   +  
Sbjct: 232 ASVTSSTHEIKSKTVIFME---KEKIYLQLNQFTKPIPIIVVMKAMGMESDQEVAQMVG- 287

Query: 208 CYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESY 267
             D +Y    G +  P + E             + T+ Q LQ++ +       G Q E  
Sbjct: 288 -RDPRY----GDLLYPSIQE--------CAFERIYTQKQALQYMDDKVMYPGAGNQKEGR 334

Query: 268 YAVAETVIRDYIFVHLNDNNDKFN----LLIFMLQKLFSLVDHTSVSDNPDSLQNQEILL 323
              +++++RD    H+   +  F         ML+++   + +    D+ D + N+ + L
Sbjct: 335 ---SKSILRDVFVAHVPVESGNFRPKCIYTAVMLRRMMDAILNADTFDDKDYVGNKRLEL 391

Query: 324 PGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSI- 382
            G LI++  ++  +                N    +  N     K  EK  S  +  S+ 
Sbjct: 392 SGQLISLLFEDLFKTM--------------NSNAVELMN-----KTSEKIHSSPLDLSLH 432

Query: 383 --ETMLKTG--RLATQTGLDLQQ----RAGYTVQAERLNFLRFISFFRAVHRGASFAGLR 434
             E ++  G  R  +    D+++    R G +    RL+++  + +   +     F   R
Sbjct: 433 IKENIITHGLERAISTGNWDIKRFRMHRKGVSQVLSRLSYMASLGYMTRI--TPQFEKTR 490

Query: 435 TTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVAS 474
            TS  R L P  WG LCP  TP+GE CGL  ++     V +
Sbjct: 491 KTSGPRALQPSQWGMLCPCDTPEGEACGLTKNLALLTHVTT 531


>gi|449455519|ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cucumis
            sativus]
          Length = 1197

 Score =  327 bits (839), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 307/1139 (26%), Positives = 498/1139 (43%), Gaps = 165/1139 (14%)

Query: 45   YTGKLMADVEF-----QYLDA----GSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
            YT KL++  +F     QY+D     G+   R+ F  G+ PVM+ +  C ++  D QK   
Sbjct: 161  YTQKLVSSDKFKTGKDQYVDKEPVEGASDNRDVF-IGRLPVMVNSDLCWMK--DGQK--- 214

Query: 96   LKEEAAEMGGYFILNGLERVF---------RSVILPKQNYPMSMVRSSFRDRREGYTDKA 146
             ++   + GGYF++ G E++F         R  I   Q + ++      R+R        
Sbjct: 215  -RDCEFDRGGYFLIKGAEKIFIAQEQICLRRLWISNVQGWTVAYRSEVKRNR-------- 265

Query: 147  VVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLT 206
            ++IR V   +S        +LN      ++L  +   +PV I+  AL  ++D EI + + 
Sbjct: 266  LIIRLVENSKSEDLKSKEKVLNV-----YFLSTE---VPVWILFFALGVSSDKEIVDLID 317

Query: 207  CCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSES 266
               D+           P V   + I+ A V+++    + +  +  G+     +D    ++
Sbjct: 318  YGRDD-----------PTV---LNILFASVREVDNDDKWKDFRR-GKRALTFLDNEIRKT 362

Query: 267  YYAVA---ETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILL 323
             +  A   E  +  Y+F  L  +  K + L +M++ L          DN D  +N+   L
Sbjct: 363  SFPPADKIEDCLNLYLFASLKGSKQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKRFEL 422

Query: 324  PGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIE 383
               L+   LK  +    R+ +K +Q          D +    +  +     +  I   + 
Sbjct: 423  AAELLERELKVHIAHARRRMEKALQR---------DLYGDRQVHPIEHYLDASIITNGLS 473

Query: 384  TMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLP 443
                TG  A      +++ +G      R N L+ ++  R   +  ++ G +    R   P
Sbjct: 474  RAFSTGAWA-HAFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTG-KVGDARYPHP 531

Query: 444  ESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP 503
              WG +C + TPDGE CGL+ +++ T  V+               + SI   L   GM  
Sbjct: 532  SHWGRVCFLSTPDGENCGLIKNLSGTGLVSL------------NTKKSITPTLFRCGM-E 578

Query: 504  SLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL 563
            +L     +       + LDG  VGV   S     V ++RR +     +         V +
Sbjct: 579  NLVDNTSTSFCGKYRIFLDGEWVGVCEDSL--SFVTNVRRKRRRNPFL-------HQVEV 629

Query: 564  SLGGAYPGLYLFTSPPKFVRP---VRNIS-LPSEESQN-----------IELIGPFEQ-- 606
                    + +F+   + +RP   V N++ +   + +N           IELIG  E+  
Sbjct: 630  KRDEQLKEVRIFSDAGRILRPLLVVENLNRIDKSKGENYTFQSLLDKGIIELIGTEEEED 689

Query: 607  --VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQM-A 663
              V   I+     +G  +     +H E+  + +L +   L P+++H+ + R ++Q Q  +
Sbjct: 690  CRVAWSIKHLMEDEGTTK----YSHCELDMSFLLGLSCGLVPFANHDHARRALFQSQKHS 745

Query: 664  KQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGID-------------EYPTGT 710
             Q +GFS     FR D   + L  PQ P+ RT T    G               E+  G 
Sbjct: 746  NQAIGFSPTNSNFRVDTLSHQLHYPQRPLFRTMTADCLGTPGYLSSHAGILPKPEFYNGQ 805

Query: 711  NAIVAVLAYTGYDMEDAMILNKSSVDRGMC---HGQIYQTETIDLSDDGNKVDRGQKLFR 767
            NAIVAV  + GY+ ED++++N++S++RGM    H + Y+ E +D  +   K  +      
Sbjct: 806  NAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAE-VDNKESSEKRRKSDDAIN 864

Query: 768  RNKDAKSLHSV--IDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVA 825
              K    +  V  +D DG PY+G  +  G+       ++        +   + +    V 
Sbjct: 865  FGKTQSKIGRVDSLDDDGFPYIGANLQSGDIVIGRCAESGADHSIKLKHTEKGMVQKVVL 924

Query: 826  VDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDL 885
                + KN    A +  R  R+P +GDKFSS HGQKGV   L    + PF+ + G+ PD+
Sbjct: 925  SSNDDGKNY---AVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFT-IQGIVPDI 980

Query: 886  IINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDEL 945
            +INPHAFPSR T   LLE+   KG +  G    ATPF               S   VD +
Sbjct: 981  VINPHAFPSRQTPGQLLEAALGKGIAAGGSLKYATPF---------------STPSVDAI 1025

Query: 946  GEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQIT 1005
             + L   GF+  G E +Y+G  G  +   IF+GP +YQRL HM  DK + R+TG +  +T
Sbjct: 1026 TDQLHRAGFSRWGSERVYNGRTGEMMRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLT 1085

Query: 1006 RQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFI 1065
            RQP+  RKR GGI+FGEMERD L+AHGA+  LH+RL T SD     VC  C +V  A+ I
Sbjct: 1086 RQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCQKCKNV--ASVI 1143

Query: 1066 HPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQ 1124
                   R + G    R P    C  C++   +  V +PY  + L  EL +M I +  +
Sbjct: 1144 Q------RSVAGGRKMRGP---YCRVCESFDDIVRVNVPYGAKLLCQELFSMGINLKFE 1193


>gi|115453445|ref|NP_001050323.1| Os03g0403100 [Oryza sativa Japonica Group]
 gi|108708688|gb|ABF96483.1| DNA-directed RNA polymerase III 130 kDa polypeptide, putative,
            expressed [Oryza sativa Japonica Group]
 gi|113548794|dbj|BAF12237.1| Os03g0403100 [Oryza sativa Japonica Group]
          Length = 1155

 Score =  327 bits (839), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 206/522 (39%), Positives = 275/522 (52%), Gaps = 55/522 (10%)

Query: 628  THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
            TH EI P  +L VVA L PY  HNQSPRN YQC M KQ MG       FRAD  LY L  
Sbjct: 668  THIEIEPLTILGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLFRADSLLYLLVY 727

Query: 688  PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
             Q P++ T T    G D+   G NA VAV++Y+GYD+EDA+++NKSS+DRG       + 
Sbjct: 728  AQRPLLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIAMKK 787

Query: 748  ETIDLSD-DGNKVDRGQKLFRRNKDAKSLHS---VIDSDGLPYVGQMIHPGEPYCSIYDK 803
             T+     +G   DR  K  +R+KD   L      +D DG    G +I   + Y  +  +
Sbjct: 788  YTVTKEKYEGGYSDRIVKP-QRDKDGALLKQNMRALDEDGFAAPGLIIRNHDIY--VNKQ 844

Query: 804  TTNSWRTNS---------------RKG--SESVFVDYVAVDMKNSKNLPQKANIRFRHTR 846
            T  + + +S                KG   E+  VD V +     + L  K  I  RHTR
Sbjct: 845  TPRNTKRDSGAHLTDRDYKDSPAVYKGVDGETTVVDRVMLCSDTDEKLIIKCII--RHTR 902

Query: 847  NPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVA 906
             P +GDKFSSRHGQKGVC  +    D PFS   G+ PDLI+NPH FPSRMTI  ++E + 
Sbjct: 903  RPEVGDKFSSRHGQKGVCGTIVQQEDFPFSE-RGICPDLIMNPHGFPSRMTIGKMIELLG 961

Query: 907  AKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGV 966
             K G   G+F   + F       N D   D S++LV          GF+Y+G ++LYSG+
Sbjct: 962  GKAGVSCGQFHYGSAFGEP--SGNADKVEDISRTLVKH--------GFSYNGKDLLYSGI 1011

Query: 967  YGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERD 1026
             G      +F+GP+YYQ+L+HMV DK   R++G    +TRQP +GR R GG+R GEMERD
Sbjct: 1012 LGHPCQAYVFMGPIYYQKLKHMVLDKMHARASGPRVLLTRQPTEGRSRDGGLRLGEMERD 1071

Query: 1027 SLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKK 1086
             L+A+GA+ L+ +RL   SD +   VC  CG  L   + H  K +               
Sbjct: 1072 CLIAYGASMLIFERLLISSDPYQVQVCRKCG--LLGYYNHKLKASY-------------- 1115

Query: 1087 VTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGDG 1128
              C  C+  + M  + MPY  + L  EL AMN+   L+L +G
Sbjct: 1116 --CSMCKNGENMAKMRMPYACKLLFQELQAMNVVPRLKLTEG 1155



 Score = 89.0 bits (219), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 109/521 (20%), Positives = 201/521 (38%), Gaps = 107/521 (20%)

Query: 9   FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
           F  +R LV+ HI+SF+Y + +G+  +                                  
Sbjct: 44  FLKVRGLVKEHIDSFNYFITKGIRNIVKANNRIEARNNPSIFLRYNSVRVGVPSVQVQYI 103

Query: 37  -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
                   CR    +Y+  ++AD+E+          +  F  G  P+ML++  C L G D
Sbjct: 104 AEKITPHFCRLTDRTYSAPVLADIEYTVGKQYELKRKPNFIIGYLPIMLRSHACVLNGKD 163

Query: 90  SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
             +L    E   + GGYFI+ G E+V   +++ +Q     ++  +          K  VI
Sbjct: 164 EAELARYGECPLDPGGYFIVKGTEKV---ILIQEQLSKNRIIIDT--------DSKGRVI 212

Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--LPVGIVLKALVDTNDLEIFNHLTC 207
             V      +  K    +    +   +LQ  ++   +P+ +V+KA+   +D E+   +  
Sbjct: 213 ASVTSSTHEIKSKTVIFME---KEKIYLQLNQFTKPIPIIVVMKAMGMESDQEVAQMVG- 268

Query: 208 CYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESY 267
             D +Y    G +  P + E             + T+ Q LQ++ +       G Q E  
Sbjct: 269 -RDPRY----GDLLYPSIQE--------CAFERIYTQKQALQYMDDKVMYPGAGNQKEGR 315

Query: 268 YAVAETVIRDYIFVHLNDNNDKFN----LLIFMLQKLFSLVDHTSVSDNPDSLQNQEILL 323
              +++++RD    H+   +  F         ML+++   + +    D+ D + N+ + L
Sbjct: 316 ---SKSILRDVFVAHVPVESGNFRPKCIYTAVMLRRMMDAILNADTFDDKDYVGNKRLEL 372

Query: 324 PGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSI- 382
            G LI++  ++  +                N    +  N     K  EK  S  +  S+ 
Sbjct: 373 SGQLISLLFEDLFKTM--------------NSNAVELMN-----KTSEKIHSSPLDLSLH 413

Query: 383 --ETMLKTG--RLATQTGLDLQQ----RAGYTVQAERLNFLRFISFFRAVHRGASFAGLR 434
             E ++  G  R  +    D+++    R G +    RL+++  + +   +     F   R
Sbjct: 414 IKENIITHGLERAISTGNWDIKRFRMHRKGVSQVLSRLSYMASLGYMTRI--TPQFEKTR 471

Query: 435 TTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVAS 474
            TS  R L P  WG LCP  TP+GE CGL  ++     V +
Sbjct: 472 KTSGPRALQPSQWGMLCPCDTPEGEACGLTKNLALLTHVTT 512


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.321    0.137    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,789,435,652
Number of Sequences: 23463169
Number of extensions: 771065073
Number of successful extensions: 1700299
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 13018
Number of HSP's successfully gapped in prelim test: 2418
Number of HSP's that attempted gapping in prelim test: 1632042
Number of HSP's gapped (non-prelim): 42097
length of query: 1131
length of database: 8,064,228,071
effective HSP length: 154
effective length of query: 977
effective length of database: 8,745,867,341
effective search space: 8544712392157
effective search space used: 8544712392157
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 83 (36.6 bits)