BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001179
(1131 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9P7X8|RPA2_SCHPO Probable DNA-directed RNA polymerase I subunit RPA2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpa2 PE=3 SV=2
Length = 1174
Score = 916 bits (2368), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 495/1144 (43%), Positives = 697/1144 (60%), Gaps = 132/1144 (11%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
R+ +Y +L+ ++F + G P E G P+M+++ RCHL+G +L++ K
Sbjct: 106 ARERLTTYKSRLV--LKFSWSVNGGPRQSEMREVGMIPIMVRSNRCHLEGLSPAELIAHK 163
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE+ EMGGYFI+NG+E++ R +ILPK+N+P +++R SF +R Y+ + IRCVR DQS
Sbjct: 164 EESEEMGGYFIVNGIEKLIRMLILPKRNHPTAIIRPSFANRGTSYSQYGLSIRCVRPDQS 223
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
S+T L+YL NG F + EYL+P ++LKAL++T+D EIF +
Sbjct: 224 SLTNTLHYLNNGVTMFRFHWRKNEYLIPSMMILKALLETSDKEIFEGIV----------G 273
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
+G+ +++RV+++L + L ++ + LQ++G F+ V+ + + V +++
Sbjct: 274 KDLGNTFLTDRVELMLRAYKSYGLYSQTETLQYLGSKFRVVLGVAEDLTDVEVGRFLLQK 333
Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
+ VHL + DKF LL+FM++KL++LV +DNPDS Q+QEILL G L LKEK+E
Sbjct: 334 VVLVHLREAKDKFRLLLFMIRKLYALVAGECCADNPDSPQHQEILLGGFLYGQILKEKIE 393
Query: 338 DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
DWL + I ++ + DF + + +V K + IGT ++ L TG L + TGL
Sbjct: 394 DWLNSIRAQINLDVRRSAPGVDFSDRKYLTRVFSK-INNDIGTKLQYFLSTGNLVSNTGL 452
Query: 398 DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDG 457
DLQQ GYTV AE+LNF RF+S FR VHRGA FA L+TT+VRKLLPE+WGF+CPVHTPDG
Sbjct: 453 DLQQATGYTVVAEKLNFYRFLSHFRMVHRGAFFAELKTTTVRKLLPEAWGFMCPVHTPDG 512
Query: 458 EPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVL 517
PCGLLNH+ C + ++ V IPSL + PP+V+
Sbjct: 513 SPCGLLNHLARKCEIVTHPSD--------------------VSQIPSLLLSLGVDPPSVV 552
Query: 518 S-------VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAA-----------SVIPDDLEVG 559
V LDG++VG + V LR +K+ A + +P DLE+G
Sbjct: 553 GHESGWGCVQLDGKIVGWCTYKLAKHVADVLRLMKIEYAVKLRNGTATEPAKVPLDLEIG 612
Query: 560 YVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDG 619
YVP S G YPGLYLF++P + VRPV++IS + ++++GPFEQV+M+I C
Sbjct: 613 YVPPSHNGQYPGLYLFSNPARMVRPVKHIS-----TGELDMLGPFEQVYMDIAC------ 661
Query: 620 GRRNAFP-------ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQ 672
FP +TH E PT +LS+VAN+TP+SD NQSPRNMYQCQM KQTMG
Sbjct: 662 -----FPKEIVPKVSTHVEYSPTNVLSIVANMTPFSDFNQSPRNMYQCQMGKQTMGTPGT 716
Query: 673 ALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNK 732
AL++R D KLY LQT QTP+VR + YG+D YP GTNA+VAV++YTGYDMEDAMILNK
Sbjct: 717 ALRYRTDNKLYRLQTGQTPVVRPKLHNTYGLDHYPNGTNAVVAVISYTGYDMEDAMILNK 776
Query: 733 SSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRR------NKDAKSLHSVIDSDGLPY 786
S+ +RG +G +Y+ E+ DLS K RG+ + + + +D+DGLP+
Sbjct: 777 SAHERGFGYGTVYKGESFDLS---QKRRRGEPVVHHFGFAPGSTPRREWLQKLDADGLPF 833
Query: 787 VGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAV---DMKNSKNLPQKANIRFR 843
+G + G+P + YD++T + G+E FVD V + D+ +S+ Q+ +++ R
Sbjct: 834 IGIKLEDGDPIVAYYDESTGQNFIETYHGTEPGFVDEVRLLGNDVGDSEC--QQIHVKLR 891
Query: 844 HTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLE 903
TR+PIIGDKFSSRHGQKG+CSQ WP +DMPF+ +GM+PD+IINPHAFPSRMTI M +E
Sbjct: 892 ITRSPIIGDKFSSRHGQKGICSQKWPTVDMPFT-ESGMQPDIIINPHAFPSRMTIGMFIE 950
Query: 904 SVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLY 963
S+A K G+ HG D+TPF S E ++ D GE L G+NYHG E +Y
Sbjct: 951 SLAGKAGACHGLAQDSTPFIYS-----------EQQTAADYFGEQLVKAGYNYHGNEPMY 999
Query: 964 SGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEM 1023
SG+ G E+ +I+IG VYYQRLRHMVSDKFQVR+TG + +TRQP+KGRKR GGIRFGEM
Sbjct: 1000 SGITGQEMKADIYIGVVYYQRLRHMVSDKFQVRTTGPIHNLTRQPVKGRKRAGGIRFGEM 1059
Query: 1024 ERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARA 1083
ERD+++ HG ++L+ DRL CSDY + VC CGS+++ + + G+ A
Sbjct: 1060 ERDAVIGHGTSFLMQDRLMNCSDYAQSWVCRDCGSIISIM-------STISMNGVGSA-- 1110
Query: 1084 PKKVTCHAC-QTSKGMET---------------------VAMPYVFRYLAAELAAMNIKI 1121
+V C +C + + G+E +A+P VF YL AEL AMNIK+
Sbjct: 1111 -SEVRCRSCAKPALGLEDTSDIWQDGSGKKFVGGTNTTLIALPSVFNYLTAELTAMNIKM 1169
Query: 1122 TLQL 1125
L++
Sbjct: 1170 MLEV 1173
>sp|Q75DS1|RPA2_ASHGO DNA-directed RNA polymerase I subunit RPA2 OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=RPA2 PE=3 SV=2
Length = 1196
Score = 896 bits (2316), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/1123 (44%), Positives = 691/1123 (61%), Gaps = 92/1123 (8%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
R+ +Y GKL+ + + D G E + G PVML++ RCHL Q+LV K
Sbjct: 120 ARKRLTTYRGKLLLKLNWSVND-GEETFSEVRDCGPLPVMLQSNRCHLHKMSPQELVEHK 178
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R Y+ V IRCVR DQ+
Sbjct: 179 EESDELGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFANRGTSYSHYGVQIRCVRPDQT 238
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
S T L+YL +G V F + EYL+PV ++LKAL D +D EIF+ +
Sbjct: 239 SQTNVLHYLNDGQVTFRFSWRKNEYLVPVVLILKALTDASDREIFDGIV----------- 287
Query: 218 GA-VGSPLVSERVKIILAEVQDL--SLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETV 274
GA + +++R++++L + L R Q LQ++G+ F+ V+ S Y V + +
Sbjct: 288 GADTSNSFLTDRLELLLRGFKKRFPQLLNRRQVLQYLGDKFRVVLQASPDMSDYLVGQEL 347
Query: 275 IRDYIFVHLND-NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLK 333
+R + VHL D N DK N+L+FM++KL+SLV DNPD+ Q+QE+LL G L + +K
Sbjct: 348 LRRIVLVHLGDENTDKSNMLMFMIRKLYSLVAGECCPDNPDATQHQEVLLGGFLYGMIVK 407
Query: 334 EKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLAT 393
EK+E++L+ K IQ ++ N G DF + + +V+ + ++ IG+ ++ L TG L +
Sbjct: 408 EKIEEYLQNIKLQIQADV-NRGMPVDFKDRKYMTRVLTR-INENIGSKLQYFLSTGNLVS 465
Query: 394 QTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVH 453
Q+GLDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPVH
Sbjct: 466 QSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVH 525
Query: 454 TPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGP 513
TPDG PCGLLNH C++++ D SK+ T +L +G+ P+ V +
Sbjct: 526 TPDGSPCGLLNHFAHKCKIST------TQSDVSKIPT----LLYSLGVSPA--AHVTAAG 573
Query: 514 PAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV-IPDDLEVGYVPLSLGGAYPGL 572
P++ V LDG++VG + V LR KV + +P DLE+GYVP S G YPGL
Sbjct: 574 PSLCCVQLDGKIVGWCSHEQGRIVADTLRYWKVEGKTDGLPLDLEIGYVPASKRGQYPGL 633
Query: 573 YLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEI 632
YLF + +RPVR + L ++ ++GPFEQV+M+I + + N TH E
Sbjct: 634 YLFGGHSRMMRPVRYLPLDKQD-----IVGPFEQVYMDIAVTP--EEIQNNVH--THVEF 684
Query: 633 HPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPI 692
PT +LS++ANLTP+SD NQSPRNMYQCQM KQTMG AL R+D KLY LQ+ QTPI
Sbjct: 685 SPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQSGQTPI 744
Query: 693 VRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDL 752
V+ N Y YG+D +P GTNA+VAV++YTGYDM+DAMI+NKS+ +RG +G +Y+TE IDL
Sbjct: 745 VKANLYDDYGMDNFPNGTNAVVAVISYTGYDMDDAMIINKSADERGFSYGTVYKTEKIDL 804
Query: 753 SDDGNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRT 810
S + D + F D K +D DGLP +G + G+P C+ +D T N +
Sbjct: 805 SLSRGRGDPVTQHFGFGTDEWPKEWLEKLDEDGLPIIGSYVEEGDPICAYFDDTLNKTKI 864
Query: 811 NSRKGSESVFVDYVAV--DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLW 868
+ SE +++ V + D N Q I++R R P IGDKFSSRHGQKGVCS+ W
Sbjct: 865 KTYHSSEPAYIEEVTLIGDESNKFQELQYITIKYRIRRVPQIGDKFSSRHGQKGVCSRKW 924
Query: 869 PDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKK 928
P +DMPFS TG++PD+IINPHAFPSRMTI M +ES+A K G+LHG DATP+ S
Sbjct: 925 PTVDMPFSE-TGIQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDATPWTFS--- 980
Query: 929 TNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHM 988
E + D G+ L G+NYHG E +YSG G EL +I+IG VYYQRLRHM
Sbjct: 981 --------EEDTPADYFGDQLLKAGYNYHGNEPMYSGATGEELRADIYIGVVYYQRLRHM 1032
Query: 989 VSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYH 1048
V+DKFQVRSTG ++ +T QP+KGRKR GGIR GEMERD+L+ HG ++LL DRL SDY
Sbjct: 1033 VNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIGHGTSFLLQDRLLNSSDYT 1092
Query: 1049 VADVCSLCGSVLTATFIHPQKRAIREIGGLPPAR----------APKKVT---------- 1088
+ VC CGS+LT + ++ +IG + R A K +T
Sbjct: 1093 QSAVCRECGSILTT------QSSVPKIGSMVTIRCRRCAISFDEAKKIITQQDSEDSIFI 1146
Query: 1089 --CHACQTSKGME--------TVAMPYVFRYLAAELAAMNIKI 1121
H + +G + TVA+P+V +YL +ELAAM I++
Sbjct: 1147 DDSHIWEDGQGNKFVGGGNTTTVAIPFVLKYLDSELAAMGIRL 1189
>sp|Q9H9Y6|RPA2_HUMAN DNA-directed RNA polymerase I subunit RPA2 OS=Homo sapiens GN=POLR1B
PE=1 SV=2
Length = 1135
Score = 894 bits (2310), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 496/1161 (42%), Positives = 675/1161 (58%), Gaps = 108/1161 (9%)
Query: 12 LRELVRHHIESFDYMLDEGLS--------------------EMFD--------------- 36
L+EL R H+ESF+Y + EGL + D
Sbjct: 35 LQELTRAHVESFNYAVHEGLGLAVQAIPPFEFAFKDERISFTILDAVISPPTVPKGTICK 94
Query: 37 -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
CR + +Y GKL AD+ + ++++ G P+M+K++ C+L+
Sbjct: 95 EANVYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQFL--GYVPIMVKSKLCNLRNLP 152
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
Q L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R ++ R GYT V +
Sbjct: 153 PQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSM 212
Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
CVR++ S+V + L+YL NG+V L F + + + LP+G LKALV +D +IF L
Sbjct: 213 HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
KE + VS+ ++I++ E +T+ Q L ++GE F+ ++
Sbjct: 270 ---KGKEDDSFLRNSVSQMLRIVMEE----GCSTQKQVLNYLGECFRVKLNVPDWYPNEQ 322
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
AE + I +HL N +KF +L M +KLF+L + DNPDSL NQE+L PG L
Sbjct: 323 AAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFL 382
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
++LKEKLE WL K + + + NL I + + E + TG
Sbjct: 383 MFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMRIFTM-----GIDLTKPFEYLFATG 437
Query: 390 RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
L ++TGL L Q +G V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGFL
Sbjct: 438 NLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFL 497
Query: 450 CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
CPVHTPDGEPCGL+NH+T+ C V + + +I L +GV I P
Sbjct: 498 CPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASI--------PALLCNLGVTPIDGAPHRS 549
Query: 510 KSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS-LGGA 568
S VLLDG +VG + + LR KV IP +EV +P++
Sbjct: 550 YS---ECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEVVLIPMTGKPSL 606
Query: 569 YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPAT 628
YPGL+LFT+P + VRPV+N++L EE LIG EQ+FM + + A T
Sbjct: 607 YPGLFLFTTPCRLVRPVQNLALGKEE-----LIGTMEQIFMNVAIFED----EVFAGVTT 657
Query: 629 HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTP 688
H+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQTMGF + + R+D KLY LQTP
Sbjct: 658 HQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTP 717
Query: 689 QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
Q+P+VR + Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG HG +Y++E
Sbjct: 718 QSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSE 777
Query: 749 TIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSW 808
IDLS+ + D + D + L +D DGLP++G + G+PY S + T
Sbjct: 778 FIDLSEKIKQGDSSLVFGIKPGDPRVLQK-LDDDGLPFIGAKLQYGDPYYSYLNLNTGES 836
Query: 809 RTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQL 867
K E+ VD + V ++ + K I R RNP IGDKF+SRHGQKG+ S+L
Sbjct: 837 FVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRL 896
Query: 868 WPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVK 927
WP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K +LHG DATPF S
Sbjct: 897 WPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFS-- 953
Query: 928 KTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRH 987
E S ++ GEML+ G+N++G E LYSG+ G EL +IFIG VYYQRLRH
Sbjct: 954 ---------EENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRH 1004
Query: 988 MVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDY 1047
MVSDKFQVR+TG D++T QPI GR GGIRFGEMERD+LLAHG ++LLHDRL CSD
Sbjct: 1005 MVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDR 1064
Query: 1048 HVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP---KKVTCHACQTSKGMETVAMP 1104
VA VC CGS+L+ P PP+ + +K C C S ++TV++P
Sbjct: 1065 SVAHVCVKCGSLLSPLLEKP-----------PPSWSAMRNRKYNCTLCSRSDTIDTVSVP 1113
Query: 1105 YVFRYLAAELAAMNIKITLQL 1125
YVFRY AELAAMNIK+ L +
Sbjct: 1114 YVFRYFVAELAAMNIKVKLDV 1134
>sp|P70700|RPA2_MOUSE DNA-directed RNA polymerase I subunit RPA2 OS=Mus musculus GN=Polr1b
PE=2 SV=2
Length = 1135
Score = 893 bits (2307), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/1168 (42%), Positives = 683/1168 (58%), Gaps = 122/1168 (10%)
Query: 12 LRELVRHHIESFDYMLDEGLSEMFD----------------------------------- 36
L++L R H++SF+Y EGLS
Sbjct: 35 LQDLTRAHVDSFNYAALEGLSHAVQAIPPFEFAFKDERISLTIVDAVISPPSVPKGTICK 94
Query: 37 -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
CR K +Y G+L AD+ + ++++ G P+M+K++ C+L
Sbjct: 95 DLNVYPAECRGRKSTYRGRLTADISWAVNGVPKGIIKQFL--GYVPIMVKSKLCNLYNLP 152
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
+ L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++MVR ++ R GYT V +
Sbjct: 153 PRVLIEHHEEAEEMGGYFIINGIEKVIRMLIVPRRNFPIAMVRPKWKSRGLGYTQFGVSM 212
Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
RCVR++ S+V + L+Y+ NG+V L F + + + LP+G LKALV +D +IF L
Sbjct: 213 RCVREEHSAVNMNLHYVENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
KE+ + VS+ ++I++ E ++ Q L ++GE F+ +
Sbjct: 270 ---KGKEEDSFFRNSVSQMLRIVIEE----GCHSQKQVLNYLGECFRVKLSLPDWYPNVE 322
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
AE ++ I +HL N DKF LL M +KLF+L + DNPDSL NQE+L PG L
Sbjct: 323 AAEFLLNQCICIHLQSNTDKFYLLCLMTRKLFALARGECMDDNPDSLVNQEVLSPGQLFL 382
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
++LKEK+E+WL K ++ + + NL I + ++ E +L TG
Sbjct: 383 MFLKEKMENWLVSIKIVLDKRAQKANVSINNENLMKIFSM-----GTELTRPFEYLLATG 437
Query: 390 RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
L ++TGL Q +G V A++LNFLR++S FR VHRGA+FA +RTT+VR+LLPESWGFL
Sbjct: 438 NLRSKTGLGFLQDSGLCVVADKLNFLRYLSHFRCVHRGAAFAKMRTTTVRRLLPESWGFL 497
Query: 450 CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
CPVHTPDG PCGLLNH+T+ C V + + SI +L G+G+ P V
Sbjct: 498 CPVHTPDGAPCGLLNHLTAVCEVVTKF----------VYTASIPALLCGLGVTP-----V 542
Query: 510 KSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS- 564
+ P S VLLDG +VG + +V LRR KV IP +EV +P++
Sbjct: 543 DTAPCRPYSDCYPVLLDGVMVGWVDKDLAPEVADTLRRFKVLREKRIPPWMEVALIPMTG 602
Query: 565 LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRN 623
YPGL+LFT+P + VRPV+N+ L EE LIG EQ+FM + D GG
Sbjct: 603 KPSLYPGLFLFTTPCRLVRPVQNLELGREE-----LIGTMEQLFMNVAIFEDEVFGGI-- 655
Query: 624 AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
+TH+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQTMGF + + R+D KLY
Sbjct: 656 ---STHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQNRSDNKLY 712
Query: 684 HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
LQTPQ+P+VR Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG HG
Sbjct: 713 RLQTPQSPLVRPCMYDFYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGS 772
Query: 744 IYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDK 803
+Y++E IDLS+ + + + D + + +D DGLP++G + G+PY S +
Sbjct: 773 VYKSEFIDLSEKFKQGEDNLVFGVKPGDPRVMQK-LDDDGLPFIGAKLEYGDPYYSYLNL 831
Query: 804 TTNSWRTNSRKGSESVFVDYVAV---DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQ 860
T K E+ VD + V DM + K + I R RNP IGDKF+SRHGQ
Sbjct: 832 NTGEGFVVYYKSKENCVVDNIKVCSNDMGSGKF--KCICITVRIPRNPTIGDKFASRHGQ 889
Query: 861 KGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDAT 920
KG+ S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K +LHG DAT
Sbjct: 890 KGILSRLWPAEDMPFTE-SGMMPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDAT 948
Query: 921 PFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPV 980
PF S E S ++ GEML+ G+N++G E LYSG+ G EL +IFIG V
Sbjct: 949 PFIFS-----------EENSALEYFGEMLKAAGYNFYGTERLYSGISGMELEADIFIGVV 997
Query: 981 YYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDR 1040
YYQRLRHMVSDKFQVR+TG D++T QP+ GR GGIRFGEMERD+LLAHG ++LLHDR
Sbjct: 998 YYQRLRHMVSDKFQVRTTGARDKVTNQPLGGRNVQGGIRFGEMERDALLAHGTSFLLHDR 1057
Query: 1041 LHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP---KKVTCHACQTSKG 1097
L CSD VA +C CGS+L+ P PP+ + +K C C S
Sbjct: 1058 LFNCSDRSVAHMCVECGSLLSPLLEKP-----------PPSWSAMRNRKYNCTVCGRSDT 1106
Query: 1098 METVAMPYVFRYLAAELAAMNIKITLQL 1125
++TV++PYVFRY AELAAMNIK+ L +
Sbjct: 1107 IDTVSVPYVFRYFVAELAAMNIKVKLDV 1134
>sp|Q54BM1|RPA2_DICDI DNA-directed RNA polymerase I subunit rpa2 OS=Dictyostelium
discoideum GN=polr1b PE=3 SV=1
Length = 1130
Score = 889 bits (2297), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 494/1180 (41%), Positives = 693/1180 (58%), Gaps = 117/1180 (9%)
Query: 10 EPLRELVRHHIESFDYMLDEGLSEM--------FDH------------------------ 37
E L+ L++ HI+SFD+ D G+ + F+H
Sbjct: 3 EELKSLIQPHIDSFDFFTDHGIDLVLKDSEPLYFEHNSTQYKIRFTDLKLSRPTRNIVEK 62
Query: 38 --------CRQAKISYTGKLMADV------EFQYLDAGSPVVRER--------FNFGQFP 75
R+ +Y + E +D G+ V + + G+ P
Sbjct: 63 EIKLYPNESRETGTTYNAPFKGAIGLYEVNEMDEMDDGTEVDYNKQEPTHTFEVDLGRLP 122
Query: 76 VMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSF 135
+M+K+R CHL G +KL+ +EE E GGYFI+NG E+V R +++ K N+P+++ R ++
Sbjct: 123 IMVKSRYCHLNGMSPEKLIESREEELEQGGYFIVNGNEKVVRMLVMTKANHPVALHRKAW 182
Query: 136 RDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVD 195
+R GYT + IRCVR D+SS+T L+Y+ +G L F + +E+ LP ++LKAL D
Sbjct: 183 TNRGPGYTKNGITIRCVRPDRSSITNNLHYINDGQTTLRFLYRRQEFFLPATLLLKALKD 242
Query: 196 TNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHF 255
T + EI+ ++ +G + +++RV++ L E + ++ T+ + L +IG F
Sbjct: 243 TTEKEIYENIV----------QGDNENTFLTDRVELSLREQKINNINTQEEVLDYIGSRF 292
Query: 256 QPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
+ S S + I ++FVHL + NDK+NLLI M+QKL+++V +DN DS
Sbjct: 293 RARTQFPPSFSNIKIGRWFINQFVFVHLPNYNDKYNLLILMIQKLYAMVGGKCGTDNIDS 352
Query: 316 LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPS 375
QE+LL GH+ + LKEKL ++L K + E+ K D A +KKV++KN
Sbjct: 353 PAFQEVLLAGHIYGMILKEKLTEYLESTKSFVLKSFEDKKKSGDKLPDA-LKKVLDKN-- 409
Query: 376 KQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
+I L TG L + +G+DLQQ +G+ V A++LNFLRFIS FR++HRGA FA ++T
Sbjct: 410 FKIADRFSYFLATGNLRSSSGIDLQQTSGFCVIADKLNFLRFISHFRSIHRGAFFATMKT 469
Query: 436 TSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV 495
T++RKL+PESWGF CPVHTPDG PCGLLNH++S C V ++ K +T +
Sbjct: 470 TAIRKLMPESWGFFCPVHTPDGAPCGLLNHLSSNCLVTVDAAQDPTVQ---KAQTLLPSF 526
Query: 496 LIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK-VSAASVIPD 554
L GM+P +V L++ LDGRV+G I E++V LR L+ + IP
Sbjct: 527 LAAHGMLPI--DMVSVYQHQYLTITLDGRVLGKIEPKAGEEMVKMLRYLRSMGNEPSIPK 584
Query: 555 DLEVGYVPLS--LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIR 612
+E+ Y P + G Y G+ LFT+ +F+RPV N++ QN ELIGP EQ++MEI
Sbjct: 585 TMEISYAPPTNVENGQYSGISLFTTGARFMRPVVNLT----SGQN-ELIGPQEQLYMEIA 639
Query: 613 C-PDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSV 671
P G TH E PT M S++ANLTP+SD+NQSPRNMYQCQMAKQTMG +
Sbjct: 640 VVPHEVIKGV-----TTHIETSPTAMFSLLANLTPFSDYNQSPRNMYQCQMAKQTMGTPL 694
Query: 672 QALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILN 731
+ FR D KLY +Q Q PIV T K+ ++YP G NA++AV++ TGYDMEDAMI+N
Sbjct: 695 HSYPFRTDNKLYKVQNVQKPIVHTKNQFKFRCNDYPHGCNAVIAVISNTGYDMEDAMIIN 754
Query: 732 KSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLF-RRNKDAKSLHSVIDSDGLPYVGQM 790
KS+ +RG HG +Y+ E IDL ++ ++ + F R N L ID+DGLP+VG++
Sbjct: 755 KSAYERGFGHGSVYKNEYIDLDQGLSRFEQKKTFFGRPNTVVDELDKFIDTDGLPFVGRL 814
Query: 791 IHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDM--KNSKNLPQKAN---IRFRHT 845
I PGEPY + + T KG E +++ V + + P K N ++ R
Sbjct: 815 IKPGEPYYTYIRPSDGRQVTKDYKGKEEAYIEDVRIIFGPNGATRDPSKINNICVKLRFN 874
Query: 846 RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
RNP+IGDKFSSRHGQKGV SQLWP+I+MPF+ +GM+PD+IINP+AFPSRMTI ML+E +
Sbjct: 875 RNPVIGDKFSSRHGQKGVLSQLWPEINMPFTE-SGMKPDVIINPNAFPSRMTIGMLVEIL 933
Query: 906 AAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSG 965
A K G++HGKF DAT F DE+ + +D GE L GFN G E +YSG
Sbjct: 934 AGKAGAIHGKFQDATAFQ-----------FDENNTAIDFFGEQLAKAGFNRFGNEQMYSG 982
Query: 966 VYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMER 1025
G E CEIF G YYQRLRHMV DK+QVR+ G ++ +TRQPIKGRK GGGIRFGEMER
Sbjct: 983 TTGKEFECEIFFGVCYYQRLRHMVKDKYQVRALGKVNALTRQPIKGRKVGGGIRFGEMER 1042
Query: 1026 DSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPK 1085
DSLLAHGA++ L+DRL SD+ VC LCGS LT I+ +K +
Sbjct: 1043 DSLLAHGASFCLNDRLMKSSDFAKIKVCKLCGSTLT---IYSKKDYSNQTVS-------- 1091
Query: 1086 KVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
C +C++S + T+++PYVF YL AELAA+NI + LQ+
Sbjct: 1092 --ECKSCKSSDSIATISIPYVFTYLVAELAAVNITMKLQV 1129
>sp|Q5REE8|RPA2_PONAB DNA-directed RNA polymerase I subunit RPA2 OS=Pongo abelii GN=POLR1B
PE=2 SV=1
Length = 1136
Score = 887 bits (2293), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 497/1162 (42%), Positives = 672/1162 (57%), Gaps = 109/1162 (9%)
Query: 12 LRELVRHHIESFDYMLDEGLS--------------------EMFD--------------- 36
L+EL R H+ESF+Y + EGL + D
Sbjct: 35 LQELTRAHVESFNYAVHEGLGLAVQAIPPFEFAFKDERISFTILDAVISPPTVPKGTICK 94
Query: 37 -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
CR + +Y GKL AD+ + ++++ G P+M+K++ C+L
Sbjct: 95 EVSVYPAECRGRRCTYRGKLTADISWAVNGISKGIIKQFL--GYVPIMVKSKLCNLYNLP 152
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
Q L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++MVR ++ R GYT V +
Sbjct: 153 PQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMVRPKWKTRGPGYTHYGVSM 212
Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
CVR++ S+V + L+YL NG+V L F + + + LP+G LKALV +D +IF L
Sbjct: 213 HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
KE + VS+ ++I++ E +T+ Q L ++GE F+ ++
Sbjct: 270 ---KGKEDDSFLRNSVSQMLRIVMEE----GCSTQKQVLNYLGECFRVKLNVPDWYPNEQ 322
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
AE + I +HL N +KF +L M +KLF+L + DNPDSL NQE+L PG L
Sbjct: 323 AAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFL 382
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
++LKEKLE WL K + + + NL I + + E + TG
Sbjct: 383 MFLKEKLEGWLVSIKIAFDKKAQKTNVSMNTDNLMRIFTM-----GIDLTKPFEYLFATG 437
Query: 390 RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
L ++TGL L Q +G V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGFL
Sbjct: 438 NLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFL 497
Query: 450 CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
CPVHTPDGEPCGL+NH+T+ C V + + +I L +GV I P
Sbjct: 498 CPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASI--------PALLCNLGVTPIDGAPHRS 549
Query: 510 KSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS-LGGA 568
S VLLDG +VG + + LR KV IP EV +P++
Sbjct: 550 YS---ECYPVLLDGVMVGWVDKELAPGIADSLRHFKVLREKRIPPWTEVVLIPMTGKPSL 606
Query: 569 YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPAT 628
YPGL+LFT+P + VRPV+N+ L EE LIG EQ+FM + + A T
Sbjct: 607 YPGLFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQIFMNVAIFED----EVFAGVTT 657
Query: 629 HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTP 688
H+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQTMGF + + R+D KLY LQTP
Sbjct: 658 HQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTP 717
Query: 689 QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
Q+P+VR + Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG HG +Y++E
Sbjct: 718 QSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSE 777
Query: 749 TIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSW 808
IDLS+ + D + D + L +D DGLP++G + G+PY S + T
Sbjct: 778 FIDLSEKIKQGDSSLVFGMKPGDPRILQK-LDDDGLPFIGAKLQYGDPYYSYLNLNTGES 836
Query: 809 RTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQL 867
K E+ VD + V ++ + K I R RNP IGDKF+SRHGQKG+ S+L
Sbjct: 837 FVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRL 896
Query: 868 WPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVK 927
WP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K +LHG DATPF S
Sbjct: 897 WPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFS-- 953
Query: 928 KTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRH 987
E S ++ GEML+ G+N++G E LYSG+ G EL +IFIG VYYQRLRH
Sbjct: 954 ---------EENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRH 1004
Query: 988 MVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAA-YLLHDRLHTCSD 1046
MVSDKFQVR+TG D++T QPI GR GGIRFGEMERD+LLAHG + +LLHDRL CSD
Sbjct: 1005 MVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFFLLHDRLFNCSD 1064
Query: 1047 YHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP---KKVTCHACQTSKGMETVAM 1103
VA VC CGS+L+ P PP+ + +K C C S ++TV++
Sbjct: 1065 RSVAHVCVKCGSLLSPLLEKP-----------PPSWSAMRNRKYNCTLCNRSDTIDTVSV 1113
Query: 1104 PYVFRYLAAELAAMNIKITLQL 1125
PYVFRY AELAAMNIK+ L +
Sbjct: 1114 PYVFRYFVAELAAMNIKVKLDV 1135
>sp|O74633|RPA2_NEUCR DNA-directed RNA polymerase I subunit RPA2 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 /
FGSC 987) GN=acr-2 PE=1 SV=2
Length = 1234
Score = 878 bits (2268), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 494/1151 (42%), Positives = 686/1151 (59%), Gaps = 121/1151 (10%)
Query: 37 HCRQAKISYTGKLMADVEFQYLDAGSP--VVRERFNFGQFPVMLKTRRCHLQGADSQKLV 94
CR+ +SY GKL A E++ ++ G P VRE GQ P+M+K+ +CHLQ +LV
Sbjct: 120 ECRERHVSYRGKLSATFEYR-INDGEPHEFVRE---LGQMPIMVKSNKCHLQNNSPAQLV 175
Query: 95 SLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRK 154
+ KEE+ E+GGYFI+NG+E++ R +++ ++N+P+++VR SF++R YT +++R VR
Sbjct: 176 ARKEESEELGGYFIVNGIEKLIRMLLVNRRNFPLAIVRPSFQNRGASYTPYGIIMRSVRP 235
Query: 155 DQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYK 214
D++S T L+YL +G+V F + EYL+PV +++KALV+TND EIF L K
Sbjct: 236 DETSQTNVLHYLSDGNVTFRFSWRKNEYLIPVMMIMKALVETNDREIFEGLVGPPQSK-- 293
Query: 215 KEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETV 274
V + +++RV+++L + L ++ Q ++G+ F+ V+ + S Y V
Sbjct: 294 ----GVANTFLTDRVELLLRTYKKYGLYSKTQTRAYLGQKFRVVLGVPDTMSDYEVGTEF 349
Query: 275 IRDYIFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
+R + VHL + DKFN+L+FM +KL++LV DNPD++QNQEILL G L
Sbjct: 350 LRKIVLVHLGSQDVTEQQDADKFNMLLFMCRKLYALVAGDCAVDNPDAVQNQEILLGGFL 409
Query: 328 ITIYLKEKLEDWLRKG-KKLIQDEIENNGK---KFDFFNLANIKKVMEKNPSKQIGTSIE 383
+KE+LE+ L + ++D + N + D F L + + + ++ IG S+E
Sbjct: 410 YGQIIKERLEELLTVSFRASLRDYLRRNPTVSFQSDTF-LKDFPIAIFRRANENIGQSLE 468
Query: 384 TMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLP 443
L TG L + +GLDLQQ +G+TV AE+LNFLRFIS FR VHRG+ FA L+TT+VRKLLP
Sbjct: 469 YFLSTGNLVSPSGLDLQQVSGFTVVAEKLNFLRFISHFRMVHRGSFFAQLKTTTVRKLLP 528
Query: 444 ESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP 503
ESWGFLCPVHTPDG PCGLLNH+ C++ + S ++I R+ +G++
Sbjct: 529 ESWGFLCPVHTPDGSPCGLLNHLAHKCKIMTE----------SVDASTISRLAFELGVV- 577
Query: 504 SLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL 563
+ + + V+LDGR+VG E + + LR KV+ + +P LE+GYVP
Sbjct: 578 ---NISSAATSESVVVMLDGRIVGWCTPEECKSIAETLRYWKVNGENGVPLQLEIGYVPP 634
Query: 564 SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRN 623
S GG+YPGLY+ + P + VRPV+ + L E+ +GP EQ +M I C + +
Sbjct: 635 SNGGSYPGLYMSSQPARMVRPVKYLPLQKED-----FVGPQEQPYMSIACTE------QE 683
Query: 624 AFP--ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQK 681
P +TH E PT +LS++AN+TP+SD NQSPRNMYQCQM KQTMG AL R D K
Sbjct: 684 VIPGDSTHVEFDPTNILSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPATALAHRTDNK 743
Query: 682 LYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCH 741
+Y LQT QTP+VR + YG D +P G NA+VAV++YTGYDM+DAMILNKS+ +RG H
Sbjct: 744 MYRLQTGQTPVVRAPLHNTYGFDNFPNGMNAVVAVISYTGYDMDDAMILNKSAHERGFGH 803
Query: 742 GQIYQTETIDLSDDGNKVDRGQ--KLFRRNKDA---KSLHSVIDSDGLPYVGQMIHPGEP 796
G IY+T+ + L DD K+F ++ +S ++D+DGLP VG+++ G+
Sbjct: 804 GSIYKTKKVSLKDDSRTRSAKSIVKMFGFAPNSTIRESTRDMLDNDGLPRVGRLLREGDV 863
Query: 797 YCSIY-------------DKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRF 842
C+ + D T+ R K SE FV+ V V ++ P Q +I+
Sbjct: 864 ICAWHTVSADYNGQLVNRDGVTHYERY---KDSEDAFVEEVRVIGADNGTEPLQTVSIKL 920
Query: 843 RHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLL 902
R R+P+IGDKFSSRHGQKGV SQ WP DMPFS TG++PD+IINPHAFPSRMTI M +
Sbjct: 921 RIPRSPVIGDKFSSRHGQKGVLSQKWPATDMPFSE-TGIQPDVIINPHAFPSRMTIGMFV 979
Query: 903 ESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVL 962
ES+A K G+LHG D+TPF DE + D G L G+NYHG E L
Sbjct: 980 ESLAGKAGALHGLAQDSTPFK-----------FDEQNTAGDYFGHQLMKAGYNYHGNEPL 1028
Query: 963 YSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGE 1022
YSG+ G E +I+IG VYYQRLRHMV+DK+QVR+TG + T QPIKGRK+GGGIR GE
Sbjct: 1029 YSGITGEEFQADIYIGVVYYQRLRHMVNDKYQVRTTGPVVPTTGQPIKGRKKGGGIRVGE 1088
Query: 1023 MERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPAR 1082
MERD+LLAHG ++LL DRL CSDY + +C CGS F+ Q IG +
Sbjct: 1089 MERDALLAHGTSFLLQDRLLNCSDYSKSWMCRQCGS-----FLSTQPTVSPFIG---KRK 1140
Query: 1083 APKKVTCHAC--------------------------QTSKGMET--VAMPYVFRYLAAEL 1114
A V C C Q G T VA+P +YL EL
Sbjct: 1141 AVSTVRCRNCAVRLDDMEDVDLMQIDGEIWEDGSGTQWIGGENTTIVAVPGALKYLDVEL 1200
Query: 1115 AAMNIKITLQL 1125
AAM IK+ ++
Sbjct: 1201 AAMGIKLKYKV 1211
>sp|P22138|RPA2_YEAST DNA-directed RNA polymerase I subunit RPA135 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPA135 PE=1
SV=1
Length = 1203
Score = 875 bits (2262), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 485/1116 (43%), Positives = 684/1116 (61%), Gaps = 79/1116 (7%)
Query: 39 RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
RQ SY GKL+ +++ ++ G + E + G PVML++ RCHL +LV KE
Sbjct: 127 RQRLTSYRGKLLLKLKWS-VNNGEENLFEVRDCGGLPVMLQSNRCHLNKMSPYELVQHKE 185
Query: 99 EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
E+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R Y+ + IR VR DQ+S
Sbjct: 186 ESDEIGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFANRGASYSHYGIQIRSVRPDQTS 245
Query: 159 VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKG 218
T L+YL +G V F + EYL+PV ++LKAL T+D EIF+ +
Sbjct: 246 QTNVLHYLNDGQVTFRFSWRKNEYLVPVVMILKALCHTSDREIFDGII----------GN 295
Query: 219 AVGSPLVSERVKIILAEVQDL--SLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
V +++R++++L + L R Q LQ++G+ F+ V +S V + V+
Sbjct: 296 DVKDSFLTDRLELLLRGFKKRYPHLQNRTQVLQYLGDKFRVVFQASPDQSDLEVGQEVLD 355
Query: 277 DYIFVHL--NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKE 334
+ VHL + + DKF +L+FM++KL+SLV DNPD+ Q+QE+LL G L + LKE
Sbjct: 356 RIVLVHLGKDGSQDKFRMLLFMIRKLYSLVAGECSPDNPDATQHQEVLLGGFLYGMILKE 415
Query: 335 KLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQ 394
K++++L+ ++ +I N G +F + + +V+ + ++ IG+ ++ L TG L +Q
Sbjct: 416 KIDEYLQNIIAQVRMDI-NRGMAINFKDKRYMSRVLMR-VNENIGSKMQYFLSTGNLVSQ 473
Query: 395 TGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHT 454
+GLDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPVHT
Sbjct: 474 SGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHT 533
Query: 455 PDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPP 514
PDG PCGLLNH CR+++ D S+ I +L +G+ P+ P
Sbjct: 534 PDGSPCGLLNHFAHKCRISTQQS------DVSR----IPSILYSLGVAPASHTFAAG--P 581
Query: 515 AVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV-IPDDLEVGYVPLSLGGAYPGLY 573
++ V +DG+++G + + + + LR KV + +P DLE+GYVP S G YPGLY
Sbjct: 582 SLCCVQIDGKIIGWVSHEQGKIIADTLRYWKVEGKTPGLPIDLEIGYVPPSTRGQYPGLY 641
Query: 574 LFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIH 633
LF + +RPVR + L E+ ++GPFEQV+M I + N TH E
Sbjct: 642 LFGGHSRMLRPVRYLPLDKED-----IVGPFEQVYMNIAVTP--QEIQNNVH--THVEFT 692
Query: 634 PTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIV 693
PT +LS++ANLTP+SD NQSPRNMYQCQM KQTMG AL R+D KLY LQT QTPIV
Sbjct: 693 PTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQTGQTPIV 752
Query: 694 RTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLS 753
+ N Y YG+D +P G NA+VAV++YTGYDM+DAMI+NKS+ +RG +G +Y+TE +DL+
Sbjct: 753 KANLYDDYGMDNFPNGFNAVVAVISYTGYDMDDAMIINKSADERGFGYGTMYKTEKVDLA 812
Query: 754 DDGNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTN 811
+ N+ D + F D K +D DGLPY+G + G+P C+ +D T N +
Sbjct: 813 LNRNRGDPITQHFGFGNDEWPKEWLEKLDEDGLPYIGTYVEEGDPICAYFDDTLNKTKIK 872
Query: 812 SRKGSESVFVDYVAV--DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWP 869
+ SE +++ V + D N Q +I++R R P IGDKFSSRHGQKGVCS+ WP
Sbjct: 873 TYHSSEPAYIEEVNLIGDESNKFQELQTVSIKYRIRRTPQIGDKFSSRHGQKGVCSRKWP 932
Query: 870 DIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKT 929
IDMPFS TG++PD+IINPHAFPSRMTI M +ES+A K G+LHG D+TP+
Sbjct: 933 TIDMPFSE-TGIQPDIIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPWI------ 985
Query: 930 NGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMV 989
+E + D GE L G+NYHG E +YSG G EL +I++G VYYQRLRHMV
Sbjct: 986 -----FNEDDTPADYFGEQLAKAGYNYHGNEPMYSGATGEELRADIYVGVVYYQRLRHMV 1040
Query: 990 SDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHV 1049
+DKFQVRSTG ++ +T QP+KGRKR GGIR GEMERD+L+ HG ++LL DRL SDY
Sbjct: 1041 NDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIGHGTSFLLQDRLLNSSDYTQ 1100
Query: 1050 ADVCSLCGSVLTATFIHPQKRAIREIGG-------------LPPARAPKKVTCHACQTSK 1096
A VC CGS+LT P+ +I + L + +K+ Q +
Sbjct: 1101 ASVCRECGSILTTQQSVPRIGSISTVCCRRCSMRFEDAKKLLTKSEDGEKIFIDDSQIWE 1160
Query: 1097 ---------GME--TVAMPYVFRYLAAELAAMNIKI 1121
G E TVA+P+V +YL +EL+AM I++
Sbjct: 1161 DGQGNKFVGGNETTTVAIPFVLKYLDSELSAMGIRL 1196
>sp|O54888|RPA2_RAT DNA-directed RNA polymerase I subunit RPA2 OS=Rattus norvegicus
GN=Polr1b PE=1 SV=1
Length = 1135
Score = 832 bits (2148), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/1183 (40%), Positives = 653/1183 (55%), Gaps = 152/1183 (12%)
Query: 12 LRELVRHHIESFDYMLDEGLSEMFD----------------------------------- 36
L++L R H++SF+Y + EGLS
Sbjct: 35 LQDLTRAHVDSFNYAVLEGLSHAVQAIPPFEFAFKDERISLTIVDAAISPPAVPKGTICK 94
Query: 37 -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
CR + +Y GKL AD+ + ++++ G P+M+K++ C+L
Sbjct: 95 ELNIYPAECRGRRSTYRGKLTADISWAVNGVPKGIIKQFL--GXVPIMVKSKLCNLYNLP 152
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
Q L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R ++ R GYT V I
Sbjct: 153 PQVLIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKSRGLGYTQFGVSI 212
Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
CVR++ S+V + L+Y+ NG+V L F + + + LP+G LKALV +D +IF L
Sbjct: 213 HCVREEHSAVNMNLHYVENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
KE+ + VS+ ++I++ E T+ Q L ++GE F+ +
Sbjct: 270 ---KGKEEDSFFKNSVSQMLRIVMEE----GCHTQKQVLDYLGERFRVKLSLPDWYPNAE 322
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
AE + I +HL N DKF LL M +KLF+L + DNPDSL NQE+L PG L
Sbjct: 323 AAEFLFNQCICIHLKSNTDKFYLLCLMTRKLFALARGECMEDNPDSLVNQEVLTPGQLFL 382
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
++LKEK+E+WL K + + + NL I + ++ E +L TG
Sbjct: 383 MFLKEKMENWLLSIKIALDKRAQKTNVSINNENLMKIFSM-----GTELTRPFEYLLATG 437
Query: 390 RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
L ++TGL Q +G V A++LNF+R++S FR VHRGA FA +RTT+VRKLLPESWGFL
Sbjct: 438 NLRSKTGLGFMQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRKLLPESWGFL 497
Query: 450 CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
CPVHTPDG PCGLLNH+T+ C V + + SI +L G+G+ P V
Sbjct: 498 CPVHTPDGAPCGLLNHLTAVCEVVTKF----------VYTASIPALLCGLGVTP-----V 542
Query: 510 KSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
+ P S VLLDG +VG + +V LRR KV SL
Sbjct: 543 DAAPCRPYSDCYPVLLDGVMVGWVDKELAPEVADTLRRFKVLRERRCS----------SL 592
Query: 566 GGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRR--- 622
G P + + P + SL + E+ C + G G RR
Sbjct: 593 DGGGPDSHDRKAKPVPRAVPLHHSLQAGEA-----------------CAEPGAGQRRARW 635
Query: 623 NAFPATHEEIH----------------PTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQT 666
N A HE H P+ V+AN P+SDHNQSPRNMYQCQM KQT
Sbjct: 636 NYGAALHEHCHLRGRGFWWSFHTPGALPSQPAEVIANFIPFSDHNQSPRNMYQCQMGKQT 695
Query: 667 MGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMED 726
MGF + + R+D KLY LQTPQ+P+VR Y Y +D YP GTNAIVAV++YTGYDMED
Sbjct: 696 MGFPLLTYQDRSDNKLYRLQTPQSPLVRPCMYDHYDMDNYPIGTNAIVAVISYTGYDMED 755
Query: 727 AMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPY 786
AMI+NK+S +RG HG +Y++E IDLS+ + D + D + + +D+DGLP+
Sbjct: 756 AMIVNKASWERGFAHGSVYKSEFIDLSEKFKQGDDSLVFGVKPGDPRVMQK-LDNDGLPF 814
Query: 787 VGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHT 845
+G + G+PY + T K E+ VD + V ++ + K + R
Sbjct: 815 IGAKLEFGDPYYGYLNLNTGEGFVVYYKSKENCVVDNIKVCSNDTGSGKFKCVCVTVRVP 874
Query: 846 RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
RNP IGDKF+SRHGQKG+ S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+
Sbjct: 875 RNPTIGDKFASRHGQKGILSRLWPAEDMPFTE-SGMMPDILFNPHGFPSRMTIGMLIESM 933
Query: 906 AAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSG 965
A K +LHG DATPF S E S ++ GEML+ G+N++G E LYSG
Sbjct: 934 AGKSAALHGLCHDATPFIFS-----------EENSALEYFGEMLKAAGYNFYGTERLYSG 982
Query: 966 VYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMER 1025
+ G EL +IFIG VYYQRLRHMVSDKFQVR+TG D++T QPI GR GGIRFGEMER
Sbjct: 983 ISGMELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFGEMER 1042
Query: 1026 DSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAP- 1084
D+LLAHG ++LLHDRL CSD VA VC CGS+L+ P PP+ +
Sbjct: 1043 DALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKP-----------PPSWSAM 1091
Query: 1085 --KKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
+K C C S ++TV++PYVFRY AELAAMNIK+ L +
Sbjct: 1092 RNRKYNCTVCGRSDSIDTVSVPYVFRYFVAELAAMNIKVKLDV 1134
>sp|P28365|RPA2_EUPOC DNA-directed RNA polymerase I subunit RPA2 OS=Euplotes octocarinatus
GN=RPA2 PE=3 SV=2
Length = 1166
Score = 804 bits (2077), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 473/1195 (39%), Positives = 664/1195 (55%), Gaps = 126/1195 (10%)
Query: 13 RELVRHHIESFDYMLDEGLSEMFDH----------------------------------- 37
+ + RHHI+SFD+ + L+ +H
Sbjct: 17 KNIARHHIDSFDFAMSTCLNRACEHMLPFDYIVPEESASCGFKKLTLWYDSFELGQPSLG 76
Query: 38 -------------CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCH 84
CRQ K++YT L A + F+ D V + G P M + + C+
Sbjct: 77 EIDYDSHILYPSECRQRKMTYTIPLFATI-FKKFD-DEMVDNFKVKLGDIPTMGRKKFCN 134
Query: 85 LQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTD 144
L+G ++L E+ E GGYFI+NG E+V R +I+PK+N+P++ RS F +R + +TD
Sbjct: 135 LKGLTKKELAKRGEDMLEFGGYFIVNGNEKVIRMLIVPKRNFPIAFKRSKFLERGKDFTD 194
Query: 145 KAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNH 204
V +RCVR D ++ T+ L YL +GSV L Q +E+L+P+ ++LKAL + D +I+
Sbjct: 195 YGVQMRCVRDDFTAQTITLTYLSDGSVSLRLIYQKQEFLIPIILILKALKNCTDRQIYER 254
Query: 205 LTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQS 264
+ KG +S+RV+ ILA +DL++ Q IG F+ V+ G+ S
Sbjct: 255 IV----------KGNFNQRQISDRVEAILAVGKDLNIYDSDQSKALIGSRFRIVLAGITS 304
Query: 265 E-SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILL 323
E S + + +I +H + KF+ LI M+ KL++ V + DN DS+ Q++LL
Sbjct: 305 ETSDIDAGDLFLSKHICIHTDSYEAKFDTLILMIDKLYASVANEVELDNLDSVAMQDVLL 364
Query: 324 PGHLITIYLKEKLEDWLRKG-KKLIQDEIENNGKKFDFFNLANIKKVMEKNPS-KQIGTS 381
GHL L EKL D L + + E++ + FD ++ + N IG
Sbjct: 365 GGHLYLQILSEKLFDCLHINLRARLNKELKRHN--FDPMKFRDVLTNQKINCGIGLIGKR 422
Query: 382 IETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKL 441
+E L TG L ++T LDL Q +G+ + ++LN +RF+S FR++HRG FA +TTSVRKL
Sbjct: 423 MENFLATGNLISRTNLDLMQTSGFCIIGDKLNNIRFLSHFRSIHRGQYFAEQKTTSVRKL 482
Query: 442 LPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGM 501
LPESWGF+CPVHTPDG PCGLLNH++ +C + + +I F +L +GM
Sbjct: 483 LPESWGFICPVHTPDGAPCGLLNHISMSCVPIGSEEKQIDIDKFRN-------ILGELGM 535
Query: 502 IPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAAS---VIPDDLEV 558
L + V+ DG +G + E V LR LK + + IP LE+
Sbjct: 536 NSISSDLCLNYHTGYYPVIFDGIHLGYVEKDIGESFVEGLRYLKCTQSQPDYAIPRTLEI 595
Query: 559 GYVPLS---LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPD 615
++P S +PG++L ++P +F RPV+N+ IE I P EQ+ + I C D
Sbjct: 596 AFIPFSGYSRNLQWPGIFLASTPARFTRPVKNLHYNC-----IEWISPLEQMNLSIACTD 650
Query: 616 GGDGGRRNAFP-ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQAL 674
+ P TH+E+ P +LS+VA++ ++++NQSPRNMYQCQMAKQTMG
Sbjct: 651 ------EDITPETTHQELDPINILSIVASVGVFAEYNQSPRNMYQCQMAKQTMGTPYHNH 704
Query: 675 KFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSS 734
+FR D K+Y L P PIV+T T + I+EYP+GTNA+VAV++YTGYD+EDAMI+NKSS
Sbjct: 705 QFRTDNKIYRLLFPHRPIVKTRTQVDFDIEEYPSGTNAVVAVISYTGYDLEDAMIINKSS 764
Query: 735 VDRGMCHGQIYQTETIDLSDDGNKVDRGQK-----LFRRNKDAKSLHSV----IDSDGLP 785
+RG HG +Y++ T DL++ ++ RG K F N K + ID DGLP
Sbjct: 765 YERGFGHGVVYKSYTHDLNESNSQSTRGIKSSVRYKFLNNVSQKDKSKIKLENIDPDGLP 824
Query: 786 YVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAV---DMKNSKNLPQKANIRF 842
+G + G+P I+D + + K SE ++ V V D KN NL IR+
Sbjct: 825 KIGSQLTKGKPELCIFDTLKRGAKLSKFKDSEKARIETVRVCGNDDKNPDNLSIGYTIRY 884
Query: 843 RHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLL 902
+R P+IGDKFSSRHGQKGV S LWP +DMPF+ G+ PDLIINPHAFPSRMT+ ML+
Sbjct: 885 --SRIPVIGDKFSSRHGQKGVLSVLWPQVDMPFTE-NGITPDLIINPHAFPSRMTMGMLI 941
Query: 903 ESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVL 962
+S+AAK GSL G+F F + +V G+ L GFNYHG E++
Sbjct: 942 QSMAAKSGSLRGEFKTVETFQRY-----------DDNDIVGHFGKELLDKGFNYHGNELM 990
Query: 963 YSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGE 1022
YSG++GT L +IFIG VYYQRLRHMVSDK Q R TG +D +T QP+KGRK+GGGIRFGE
Sbjct: 991 YSGIFGTPLKADIFIGVVYYQRLRHMVSDKSQARGTGPIDILTHQPVKGRKKGGGIRFGE 1050
Query: 1023 MERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVL----------TATFIHPQKRAI 1072
MERDSLLAHGAAY L+DRL SDY VC CGS+L T TFI P
Sbjct: 1051 MERDSLLAHGAAYCLNDRLFRSSDYSEGFVCQNCGSILSCYVNRAIMKTQTFIPPSLDES 1110
Query: 1073 REIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
+ +KV C C+ + + VA+P+V R+LA ELA+M IK+ + D
Sbjct: 1111 NKDTEDKEIHMNEKVICKVCKKNSNCKKVALPFVLRFLANELASMGIKLKFTVND 1165
>sp|P20028|RPA2_DROME DNA-directed RNA polymerase I subunit RPA2 OS=Drosophila melanogaster
GN=RpI135 PE=2 SV=2
Length = 1129
Score = 778 bits (2009), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/1098 (39%), Positives = 649/1098 (59%), Gaps = 81/1098 (7%)
Query: 39 RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
RQ +SY+G M V + G + G+ P+ML+++ C+L A +++V E
Sbjct: 103 RQLHVSYSG--MCSVRLGWSVNGVQKTPINMDLGEVPIMLRSKACNLGQATPEEMVKHGE 160
Query: 99 EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
+E GG F++ G E++ R +I+ ++N+P+ + RSS++DR + ++D ++++ VR+D+SS
Sbjct: 161 HDSEWGGIFVIRGNEKIVRMLIMTRRNHPICVKRSSWKDRGQNFSDLGMLVQTVREDESS 220
Query: 159 VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKG 218
++ ++YL NG+ + F + +PV ++LK L+D D EI+N L + Y+ ++
Sbjct: 221 LSNVVHYLNNGTAKFMFSHVKRLSYVPVCLILKCLMDYTDEEIYNRLV----QGYESDQY 276
Query: 219 AVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ---PVIDGLQSESYYAVAETVI 275
V V+ +L EVQ+ ++ T QC IG F+ P + Q + V + ++
Sbjct: 277 YVSC------VQAMLREVQNENVYTHAQCKSFIGNLFRARFPEVPEWQPDD--DVTDFIL 328
Query: 276 RDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEK 335
R+ + +HL+ DKF L++FM+QKLF +N DS QE+LLPGHL YL E+
Sbjct: 329 RERVMIHLDTYEDKFQLIVFMIQKLFQCAQGKYKVENVDSAMMQEVLLPGHLYQKYLSER 388
Query: 336 LEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQT 395
+E W+ + ++ +Q ++ + A + + M + + +G +IE+ L TG +A++T
Sbjct: 389 VESWVSQVRRCLQKKLTSPDA---LVTSAVMTQCMRQ--AGGVGRAIESFLATGNIASRT 443
Query: 396 GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTP 455
GL L Q +G + AE +N +R++S FRA+HRG+ F +RTT R+LLP++WGF+CPVHTP
Sbjct: 444 GLGLMQNSGLVIMAENINRMRYMSHFRAIHRGSYFTTMRTTEARQLLPDAWGFICPVHTP 503
Query: 456 DGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPA 515
DG PCGLLNH+T TC ++ +R K+ +I + LI +GM+P + +
Sbjct: 504 DGTPCGLLNHLTLTCEIS--------MRPDPKLVKAIPKHLIDMGMMPLSNR--RYLGEK 553
Query: 516 VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLF 575
+ V LDG+ +G I SE EK+V LR K+ +P +E+G++P G +PGLY+
Sbjct: 554 LYVVFLDGKHLGHIHQSEAEKIVDELRYGKIFGT--LPQMMEIGFIPFKKNGQFPGLYIA 611
Query: 576 TSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFP--ATHEEIH 633
T P + +RPV N+ + +E IG EQ++MEI + +P TH E+
Sbjct: 612 TGPARMMRPVWNLKW-----KRVEYIGTLEQLYMEIAI------DAKEMYPDFTTHLELA 660
Query: 634 PTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIV 693
T +S +ANL P D+NQSPRNMYQCQM KQTMG +A KLY LQTP TP+
Sbjct: 661 KTHFMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQTPGTPLF 720
Query: 694 RTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLS 753
R Y +D++ GTNAIVAV++YTGYDMEDAMI+NK++ +RG +G IY+T+ + L
Sbjct: 721 RPVHYDNIQLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAYERGFAYGSIYKTKFLTL- 779
Query: 754 DDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR 813
D+ F R+ L +D+DGLP+ G + G P +D +++
Sbjct: 780 ------DKKSSYFARHPHMPELIKHLDTDGLPHPGSKLSYGSPLYCYFDGEVATYKVVKM 833
Query: 814 KGSESVFVDYVAVDMKNSKNL-PQK-ANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDI 871
E V+ ++ S +L P+K I R R IGDKF+SR GQKG+CSQ +P
Sbjct: 834 DEKEDCIVE--SIRQLGSFDLSPKKMVAITLRVPRPATIGDKFASRAGQKGICSQKYPAE 891
Query: 872 DMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNG 931
D+PF+ +G+ PD++ NPH FPSRMTIAM++E++A KG ++HG DATPF S
Sbjct: 892 DLPFTE-SGLIPDIVFNPHGFPSRMTIAMMIETMAGKGAAIHGNVYDATPFRFS------ 944
Query: 932 DTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSD 991
E + +D G+ML G+NY+G E LYSGV G E+T +IF G V+YQRLRHMV D
Sbjct: 945 -----EENTAIDYFGKMLEAGGYNYYGTERLYSGVDGREMTADIFFGVVHYQRLRHMVFD 999
Query: 992 KFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVAD 1051
K+QVRSTG ++ T QPIKGRKRGGG+RFGEMERD+L++HGAA+LL DRL SD
Sbjct: 1000 KWQVRSTGAVEARTHQPIKGRKRGGGVRFGEMERDALISHGAAFLLQDRLFHNSDKTHTL 1059
Query: 1052 VCSLCGSVLTATFIHPQKRAIR--EIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRY 1109
VC CGS+L P +R ++ E GGL + + TC C + + + +P+ F+Y
Sbjct: 1060 VCHKCGSILA-----PLQRIVKRNETGGL----SSQPDTCRLCGDNSSVSMIEIPFSFKY 1110
Query: 1110 LAAELAAMNIKITLQLGD 1127
L EL+++NI +L +
Sbjct: 1111 LVTELSSVNINARFKLNE 1128
>sp|P22276|RPC2_YEAST DNA-directed RNA polymerase III subunit RPC2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RET1 PE=1 SV=2
Length = 1149
Score = 417 bits (1072), Expect = e-115, Method: Compositional matrix adjust.
Identities = 346/1200 (28%), Positives = 539/1200 (44%), Gaps = 186/1200 (15%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
F ++ LV+ H++SF+Y +D L ++
Sbjct: 51 FLKVKGLVKQHLDSFNYFVDTDLKKIIKANQLILSDVDPEFYLKYVDIRVGKKSSSSTKD 110
Query: 37 ------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADS 90
CR ++Y+ + D+E Y + ++ + G+ P+ML++ +C L AD
Sbjct: 111 YLTPPHECRLRDMTYSAPIYVDIE--YTRGRNIIMHKDVEIGRMPIMLRSNKCILYDADE 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
K+ L E + GGYFI+NG E+V +++ +Q ++ + D ++G +V
Sbjct: 169 SKMAKLNECPLDPGGYFIVNGTEKV---ILVQEQLSKNRIIVEA--DEKKGIVQASVTSS 223
Query: 151 C-VRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
RK ++ V K NG + L +E +P+ IVLKA +DLEI L C
Sbjct: 224 THERKSKTYVITK-----NGKIYLKHNSIAEE--IPIAIVLKACGILSDLEIM-QLVCGN 275
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV----IDGLQSE 265
D Y+ + + L E L + T+ Q L++IG + + + LQ E
Sbjct: 276 DSSYQ------------DIFAVNLEESSKLDIYTQQQALEYIGAKVKTMRRQKLTILQ-E 322
Query: 266 SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPG 325
A+A TVI ++ V D +K + M +++ + + + D+ D + N+ + L G
Sbjct: 323 GIEAIATTVIA-HLTVEALDFREKALYIAMMTRRVVMAMYNPKMIDDRDYVGNKRLELAG 381
Query: 326 HLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
LI++ ++ + + K I ++ + ++ L +I S I + +
Sbjct: 382 QLISLLFEDLFKKFNNDFKLSIDKVLKKPNRAMEYDALLSINV-----HSNNITSGLNRA 436
Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPE 444
+ TG + + +RAG T RL+++ + + + F R S R L P
Sbjct: 437 ISTGNWSLKRFK--MERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRKVSGPRALQPS 492
Query: 445 SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
+G LC TP+GE CGL+ ++ + + D + L ++GV I
Sbjct: 493 QFGMLCTADTPEGEACGLVKNLALMTHITT---------DDEEEPIKKLCYVLGVEDI-- 541
Query: 505 LPKLVKSGPPAV-LSVLLDGRVVGVI--PSSEIEKVVAHLRRL-KVSAASVIPDDLEVGY 560
L+ S + V L+G ++G I P+ + + HLRR KVS +
Sbjct: 542 --TLIDSASLHLNYGVYLNGTLIGSIRFPTKFVTQF-RHLRRTGKVSE-----------F 587
Query: 561 VPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFE-----QVFMEIRCPD 615
+ + +++ T + RP+ +S ++I L + F+++ +
Sbjct: 588 ISIYSNSHQMAVHIATDGGRICRPLIIVSDGQSRVKDIHLRKLLDGELDFDDFLKLGLVE 647
Query: 616 GGDGGRRN----------AFPA-THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAK 664
D N P+ TH EI P +L VA L PY HNQSPRN YQC M K
Sbjct: 648 YLDVNEENDSYIALYEKDIVPSMTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGK 707
Query: 665 QTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDM 724
Q +G R D LY + PQ P+V+T T D+ P G NA VAV++Y+GYD+
Sbjct: 708 QAIGAIAYNQFKRIDTLLYLMTYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDI 767
Query: 725 EDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDR--GQKLFRRNKDAKSLHSVIDSD 782
EDA++LNKSS+DRG + + T L N G N D H + D
Sbjct: 768 EDALVLNKSSIDRGFGRCETRRKTTTVLKRYANHTQDIIGGMRVDENGDPIWQHQSLGPD 827
Query: 783 GLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR---------------KGSESVFVDYVAVD 827
GL VG + G+ Y + T ++ N +G E +D V
Sbjct: 828 GLGEVGMKVQSGQIYINKSVPTNSADAPNPNNVNVQTQYREAPVIYRGPEPSHIDQVM-- 885
Query: 828 MKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLII 887
M S N + R R P +GDKFSSRHGQKGVC + DMPF+ G+ PD+I+
Sbjct: 886 MSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVKQEDMPFND-QGIVPDIIM 944
Query: 888 NPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGE 947
NPH FPSRMT+ ++E ++ K G L+G T F G D SK LVD+
Sbjct: 945 NPHGFPSRMTVGKMIELISGKAGVLNGTLEYGTCFG-------GSKLEDMSKILVDQ--- 994
Query: 948 MLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQ 1007
GFNY G ++LYSG+ G L IF GP+YYQ+L+HMV DK R+ G +TRQ
Sbjct: 995 -----GFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQ 1049
Query: 1008 PIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHP 1067
P +GR R GG+R GEMERD ++A+GA+ LL +RL SD DVC CG + + +
Sbjct: 1050 PTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCDKCGLMGYSGW--- 1106
Query: 1068 QKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
C C++++ + + +PY + L EL +MNI L+L D
Sbjct: 1107 ---------------------CTTCKSAENIIKMTIPYAAKLLFQELLSMNIAPRLRLED 1145
>sp|Q10233|RPC2_SCHPO DNA-directed RNA polymerase III subunit RPC2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpc2 PE=2 SV=1
Length = 1165
Score = 400 bits (1029), Expect = e-110, Method: Compositional matrix adjust.
Identities = 339/1142 (29%), Positives = 521/1142 (45%), Gaps = 156/1142 (13%)
Query: 37 HCRQAKISYTGKLMADVEFQYLDAGSPVVRER-FNFGQFPVMLKTRRCHLQGADSQKLVS 95
CR ++Y + D+E+ G VVR R G+ PVML++ +C L G + ++ +
Sbjct: 125 ECRLRDLTYGANIYVDIEYT---RGKQVVRRRNVPIGRMPVMLRSNKCVLSGKNEMEMAA 181
Query: 96 LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
L E + GGYFI+ G E+V IL ++ + + ++ + RK
Sbjct: 182 LNECPLDPGGYFIVKGTEKV----ILVQEQLSKNRIIVEAEPKKGLWQASVTSSTHERKS 237
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
++ V K NG + L + +P+ +VLKA+ +D EIF L + Y+
Sbjct: 238 KTYVITK-----NGKLYLKHNSVADD--IPIVVVLKAMGLQSDQEIF-ELVAGAEASYQD 289
Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ-PVIDGLQSESYYAVAETV 274
+ +P + E K L++ T Q L++IG + G + A V
Sbjct: 290 ----LFAPSIEECAK--------LNIYTAQQALEYIGARVKVNRRAGANRLPPHEEALEV 337
Query: 275 IRDYIFVHLNDNNDKFN-----LLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
+ + H+N N +F + I + L ++VD V D D + N+ + L G L+
Sbjct: 338 LAAVVLAHINVFNLEFRPKAVYIGIMARRVLMAMVDPLQVDDR-DYVGNKRLELAGQLLA 396
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKK------FDFFNLANIKKVMEKNPSKQIGTSIE 383
+ ED +K ++ I+ KK FD +N + S I +
Sbjct: 397 LLF----EDLFKKFNSDLKLNIDKVLKKPHRTQEFDAYNQLTVH-------SDHITQGMV 445
Query: 384 TMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLL 442
L TG + + +RAG T RL+++ + + + F R S R L
Sbjct: 446 RALSTGNWSLKRFK--MERAGVTHVLSRLSYISALGMMTRIT--SQFEKTRKVSGPRSLQ 501
Query: 443 PESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMI 502
+G LC TP+GE CGL+ ++ + + + I+ + V+ G
Sbjct: 502 ASQFGMLCTSDTPEGEACGLVKNLALMTHITTDEEEEPIIKLAYAFGIEDIHVISG---- 557
Query: 503 PSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVP 562
+L G V L+G ++G+ S VA R+L+ S + P ++
Sbjct: 558 ---RELHSHG---TYLVYLNGAILGI--SRYPSLFVASFRKLRRSG-KISP------FIG 602
Query: 563 LSLGGAYPGLYLFTSPPKFVRP---VRNISLPSEESQNIELIGP----FEQVFME----- 610
+ + +++ T + RP V+N LP ES++I L+ FE +
Sbjct: 603 IFINTHQRAVFISTDGGRICRPLIIVQN-GLPKVESKHIRLLKEGKWGFEDFLKQGLVEY 661
Query: 611 IRCPDGGDG----GRRNAFP-ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQ 665
+ + D R+ P TH EI P +L VA L PY HNQSPRN YQC M KQ
Sbjct: 662 VDVNEENDSLISVYERDITPDTTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQ 721
Query: 666 TMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDME 725
+G R D LY + PQ P+V+T T G D+ P G NA VA+++Y+GYD+E
Sbjct: 722 AIGAIAYNQLQRIDTLLYLMVYPQQPMVKTKTIELIGYDKLPAGQNATVAIMSYSGYDIE 781
Query: 726 DAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSL---HSVIDSD 782
DA++LNKSS+DRG Q++ ++ + N +R+ + + H V++ D
Sbjct: 782 DALVLNKSSIDRGFGRCQVFHKHSVIVRKYPNGTHDRIGDPQRDPETGEVVWKHGVVEDD 841
Query: 783 GLPYVGQMIHPGEPYC-----------SIYDKTTNSWRTNSR------KGSESVFVDYVA 825
GL VG + PG+ Y SI T + + + K E ++D V
Sbjct: 842 GLAGVGCRVQPGQIYVNKQTPTNALDNSITLGHTQTVESGYKATPMTYKAPEPGYIDKVM 901
Query: 826 VDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDL 885
+ +S K + R TR P +GDKFSSRHGQKGVC + DMPF+ G+ PD+
Sbjct: 902 LTTTDSDQTLIK--VLMRQTRRPELGDKFSSRHGQKGVCGVIVQQEDMPFND-QGICPDI 958
Query: 886 IINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDEL 945
I+NPH FPSRMT+ ++E ++ K G L G T F G D S+ LV+
Sbjct: 959 IMNPHGFPSRMTVGKMIELLSGKVGVLRGTLEYGTCFG-------GTKVEDASRILVEH- 1010
Query: 946 GEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQIT 1005
G+NY G ++L SG+ G L IF+GP+YYQ+L+HMV DK R+ G +T
Sbjct: 1011 -------GYNYSGKDMLTSGITGETLEAYIFMGPIYYQKLKHMVMDKMHARARGPRAVLT 1063
Query: 1006 RQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFI 1065
RQP +GR R GG+R GEMERD L+A+GA+ LL +RL SD DVC CG +
Sbjct: 1064 RQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLMISSDACDVDVCGQCGLL------ 1117
Query: 1066 HPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
K C++CQ+++ + + +PY + L EL +MNI L L
Sbjct: 1118 ------------------GYKGWCNSCQSTREVVKMTIPYAAKLLFQELLSMNIVPRLAL 1159
Query: 1126 GD 1127
D
Sbjct: 1160 ED 1161
>sp|P25167|RPC2_DROME DNA-directed RNA polymerase III subunit RPC2 OS=Drosophila
melanogaster GN=RpIII128 PE=2 SV=2
Length = 1137
Score = 400 bits (1028), Expect = e-110, Method: Compositional matrix adjust.
Identities = 332/1141 (29%), Positives = 511/1141 (44%), Gaps = 181/1141 (15%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR +Y+ + D+E Y + R G+ P+ML+ C L G +L L
Sbjct: 110 CRLRDTTYSAPITVDIE--YTRGTQRIKRNNLLIGRMPLMLRCSNCALTGKSEFELSKLN 167
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC----VR 153
E + GGYF++ G E+V +++ +Q M+ F V++C
Sbjct: 168 ECPLDPGGYFVVRGQEKV---ILIQEQLSWNKMLTEDFNG----------VVQCQVTSST 214
Query: 154 KDQSSVTLKL-----YYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
++ S TL L YYL + S+ +P+ ++ KAL +D EI + +
Sbjct: 215 HEKKSRTLVLSKHGKYYLKHNSMTDD---------IPIVVIFKALGVVSDQEIQSLIGI- 264
Query: 209 YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIG-----EHFQPVIDGLQ 263
D K + GA L + +L + T+ + L+++G + FQ
Sbjct: 265 -DSKSQNRFGAS------------LIDAYNLKVFTQQRALEYMGSKLVVKRFQSATTKTP 311
Query: 264 SESYYAVAETVIRDYIFVHLNDNNDKFNLLI------FMLQKLFSLVDHTSVSDNPDSLQ 317
SE + T I ++ V D FNL + M++++ + ++ D+ D
Sbjct: 312 SEEARELLLTTILAHVPV------DNFNLQMKAIYVSMMVRRVMAAELDKTLFDDRDYYG 365
Query: 318 NQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIEN-NGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+++ ++ + + K + I +FD V++ +
Sbjct: 366 NKRLELAGSLLSMMFEDLFKRMNWELKTIADKNIPKVKAAQFD---------VVKHMRAA 416
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
QI +E+ + +G + +RAG T RL+++ + V+ + F R
Sbjct: 417 QITAGLESAISSGNWTIKRFK--MERAGVTQVLSRLSYISALGMMTRVN--SQFEKTRKV 472
Query: 437 S-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV 495
S R L P WG LCP TP+GE CGL+ ++ + + + R I+
Sbjct: 473 SGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVEERP---------VMIVAF 523
Query: 496 LIGVGMIPSLPKLVKSGP---PAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVI 552
GV I + V P P V V ++G V+G+ + + +V +LR ++
Sbjct: 524 NAGVEDI----REVSGNPINNPNVFLVFINGNVLGLTLNHK--HLVRNLRYMRRKG---- 573
Query: 553 PDDLEVG-YVPLSLGGAYPGLYLFTSPPKFVRP---VRNISLPSEESQNIEL---IGPFE 605
+G YV + +Y+ T + RP V N ++ EL I F+
Sbjct: 574 ----RMGSYVSVHTSYTQRCIYIHTDGGRLCRPYVIVENRRPLVKQHHLDELNRGIRKFD 629
Query: 606 QVFMEIRCPDGGDGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPR 655
++ ++F A TH EI P +L V A L PY HNQSPR
Sbjct: 630 DFLLDGLIEYLDVNEENDSFIAWNEDQIEDRTTHLEIEPFTLLGVCAGLVPYPHHNQSPR 689
Query: 656 NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
N YQC M KQ MG K R D +Y+L P P+V++ T D+ P G NA VA
Sbjct: 690 NTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPHAPMVKSKTIELTNFDKLPAGQNATVA 749
Query: 716 VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DRGQKLFRRNKDAKS 774
V++Y+GYD+EDA+ILNK+S+DRG +Y+ + N+ DR + K
Sbjct: 750 VMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDRIMGPMKDALTNKV 809
Query: 775 L--HSVIDSDGLPYVGQ-------MIHPGEPYCSIYD-------KTTNSWRTNSRKGSES 818
+ H V+D+DG+ G+ MI+ P + + + + S KG E
Sbjct: 810 IFKHDVLDTDGIVAPGEQVQNKQIMINKEMPAVTSMNPLQGQSAQVPYTAVPISYKGPEP 869
Query: 819 VFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGV 878
+++ V V ++ K I R TR P IGDKFSSRHGQKGV + DMPF+
Sbjct: 870 SYIERVMVSANAEEDFLIK--ILLRQTRIPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDF 927
Query: 879 TGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDES 938
G+ PD+I+NPH FPSRMT+ LE + K G L GKF T F S
Sbjct: 928 -GICPDMIMNPHGFPSRMTVGKTLELLGGKAGLLEGKFHYGTAFGGSK------------ 974
Query: 939 KSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRST 998
V+++ L GFNY G + YSG+ GT L I+ GPVYYQ+L+HMV DK R+
Sbjct: 975 ---VEDIQAELERHGFNYVGKDFFYSGITGTPLEAYIYSGPVYYQKLKHMVQDKMHARAR 1031
Query: 999 GTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGS 1058
G +TRQP +GR R GG+R GEMERD L+++GA+ L+ +RL SD DVC CG
Sbjct: 1032 GPKAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMISSDAFEVDVCRTCGR 1091
Query: 1059 VLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMN 1118
+ ++ CH CQ+S + ++MPY + L EL +MN
Sbjct: 1092 MAYCSW------------------------CHFCQSSANVSKISMPYACKLLFQELTSMN 1127
Query: 1119 I 1119
+
Sbjct: 1128 V 1128
>sp|Q9NW08|RPC2_HUMAN DNA-directed RNA polymerase III subunit RPC2 OS=Homo sapiens
GN=POLR3B PE=1 SV=2
Length = 1133
Score = 393 bits (1010), Expect = e-108, Method: Compositional matrix adjust.
Identities = 326/1139 (28%), Positives = 511/1139 (44%), Gaps = 161/1139 (14%)
Query: 37 HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
CR ++Y+ + D+E Y ++R G+ P+ML++ C L G + L
Sbjct: 101 ECRLRDMTYSAPITVDIE--YTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKL 158
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
E + GGYFI+ G+E+V +++ +Q +S R R+G +V
Sbjct: 159 NECPLDPGGYFIVKGVEKV---ILIQEQ---LSKNRIIVEADRKGAVGASV--------- 203
Query: 157 SSVTLKLYYLLNGSVRLG-FWLQGKEYL--LPVGIVLKALVDTNDLEIFNHLTCCYDEKY 213
+S T + N +V+ G F+L+ +P+ I+ KA+ +D EI +
Sbjct: 204 TSSTHEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQEIVQMIGT------ 257
Query: 214 KKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHF--QPVIDGLQSESYYAVA 271
++ A P L E Q + T++Q L++IG Q + G ++ A
Sbjct: 258 EEHVMAAFGP--------SLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEA 309
Query: 272 ETVIRDYIFVHLNDNNDKFN---LLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
++ I H+ F + ++ + L + D+ D N+ + L G L+
Sbjct: 310 RELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGDNKVDDRDYYGNKRLELAGQLL 369
Query: 329 TIYLKEKLEDWLRKGKKLIQDEI-ENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLK 387
++ ++ + + + KK+ I + +FD V++ QI + +
Sbjct: 370 SLLFEDLFKKFNSEMKKIADQVIPKQRAAQFD---------VVKHMRQDQITNGMVNAIS 420
Query: 388 TGRLATQT-GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPES 445
TG + + +D R G T RL+++ + + + F R S R L P
Sbjct: 421 TGNWSLKRFKMD---RQGVTQVLSRLSYISALGMMTRI--SSQFEKTRKVSGPRSLQPSQ 475
Query: 446 WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
WG LCP TP+GE CGL+ ++ + + + ++ S + + +L G +
Sbjct: 476 WGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEEL---- 531
Query: 506 PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
P V V L+G ++GVI + +K+V R ++ A I + +V +S
Sbjct: 532 ------SYPNVFLVFLNGNILGVI--RDHKKLVNTFRLMR--RAGYINE-----FVSIST 576
Query: 566 GGAYPGLYLFTSPPKFVRP--VRNISLPSEESQNIELIGP----FEQVFME--IRCPDGG 617
+Y+ + + RP + P+ ++++E + FE E + D
Sbjct: 577 NLTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVN 636
Query: 618 DGGRRNAF--------PATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGF 669
+ N TH EI P +L V A L PY HNQSPRN YQC M KQ MG
Sbjct: 637 EENDCNIALYEHTINKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGT 696
Query: 670 SVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMI 729
+ R D +Y L PQ P+V+T T ++ P G NA VAV++Y+GYD+EDA++
Sbjct: 697 IGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALV 756
Query: 730 LNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR--GQKLFRRNKDAKSLHSVIDSDG--- 783
LNK+S+DRG +Y+ L N+ D+ G L + H ++D+DG
Sbjct: 757 LNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAATRKPIWRHEILDADGICS 816
Query: 784 ---------------LPYVGQMIHPGE--PYCSIYDKTTNSWRTNSRKGSESVFVDYVAV 826
+P V Q+ G P Y +++ + E V + A
Sbjct: 817 PGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAE 876
Query: 827 DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLI 886
D K L R TR P IGDKFSSRHGQKGVC + P DMPF +G+ PD+I
Sbjct: 877 DAFLIKML-------LRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCD-SGICPDII 928
Query: 887 INPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELG 946
+NPH FPSRMT+ L+E +A K G L G+F T F S V ++
Sbjct: 929 MNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSK---------------VKDVC 973
Query: 947 EMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITR 1006
E L G+NY G + + SG+ G L I+ GPVYYQ+L+HMV DK R+ G +TR
Sbjct: 974 EDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTR 1033
Query: 1007 QPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIH 1066
QP +GR R GG+R GEMERD L+ +GA+ LL +RL SD DVC CG + + +
Sbjct: 1034 QPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLGYSGW-- 1091
Query: 1067 PQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
CH C++S + ++ +PY + L EL +MNI L+L
Sbjct: 1092 ----------------------CHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLKL 1128
>sp|P59470|RPC2_MOUSE DNA-directed RNA polymerase III subunit RPC2 OS=Mus musculus
GN=Polr3b PE=2 SV=2
Length = 1133
Score = 393 bits (1010), Expect = e-108, Method: Compositional matrix adjust.
Identities = 326/1140 (28%), Positives = 511/1140 (44%), Gaps = 161/1140 (14%)
Query: 37 HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
CR ++Y+ + D+E Y ++R G+ P+ML++ C L G + L
Sbjct: 101 ECRLRDMTYSAPITVDIE--YTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKL 158
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
E + GGYFI+ G+E+V +++ +Q +S R R+G +V
Sbjct: 159 NECPLDPGGYFIVKGVEKV---ILIQEQ---LSKNRIIVEADRKGAVGASV--------- 203
Query: 157 SSVTLKLYYLLNGSVRLG-FWLQGKEYL--LPVGIVLKALVDTNDLEIFNHLTCCYDEKY 213
+S T + N +V+ G F+L+ +P+ I+ KA+ +D EI +
Sbjct: 204 TSSTHEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQEIVQMIGT------ 257
Query: 214 KKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHF--QPVIDGLQSESYYAVA 271
++ A P L E Q + T++Q L++IG Q + G ++ A
Sbjct: 258 EEHVMAAFGP--------SLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEA 309
Query: 272 ETVIRDYIFVHLNDNNDKFN---LLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
++ I H+ F + ++ + L + D+ D N+ + L G L+
Sbjct: 310 RELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGDNKVDDRDYYGNKRLELAGQLL 369
Query: 329 TIYLKEKLEDWLRKGKKLIQDEI-ENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLK 387
++ ++ + + + KK+ I + +FD V++ QI + +
Sbjct: 370 SLLFEDLFKKFNSEMKKIADQVIPKQRAAQFD---------VVKHMRQDQITNGMVNAIS 420
Query: 388 TGRLATQT-GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPES 445
TG + + +D R G T RL+++ + + + F R S R L P
Sbjct: 421 TGNWSLKRFKMD---RQGVTQVLSRLSYISALGMMTRI--SSQFEKTRKVSGPRSLQPSQ 475
Query: 446 WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
WG LCP TP+GE CGL+ ++ + + + I+ + + +L G +
Sbjct: 476 WGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLAGNLGVEDVNLLCGEEL---- 531
Query: 506 PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
P V V L+G ++GVI + +K+V+ R ++ A I + +V +S
Sbjct: 532 ------SYPNVFLVFLNGNILGVI--RDHKKLVSTFRLMR--RAGYINE-----FVSIST 576
Query: 566 GGAYPGLYLFTSPPKFVRP--VRNISLPSEESQNIELIGP----FEQVFME--IRCPDGG 617
+Y+ + + RP + P+ ++++E + FE E + D
Sbjct: 577 NLTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVN 636
Query: 618 DGGRRNAF--------PATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGF 669
+ N TH EI P +L V A L PY HNQSPRN YQC M KQ MG
Sbjct: 637 EENDCNIALYEHTINKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGT 696
Query: 670 SVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMI 729
+ R D +Y L PQ P+V+T T ++ P G NA VAV++Y+GYD+EDA++
Sbjct: 697 IGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIDFEKLPAGQNATVAVMSYSGYDIEDALV 756
Query: 730 LNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR--GQKLFRRNKDAKSLHSVIDSDG--- 783
LNK+S+DRG +Y+ L N+ D+ G L + H ++D+DG
Sbjct: 757 LNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAATRKPIWRHEILDADGICS 816
Query: 784 ---------------LPYVGQMIHPGE--PYCSIYDKTTNSWRTNSRKGSESVFVDYVAV 826
+P V Q+ G P Y +++ + E V + A
Sbjct: 817 PGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAE 876
Query: 827 DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLI 886
D K L R TR P IGDKFSSRHGQKGVC + P DMPF +G+ PD+I
Sbjct: 877 DAFLIKML-------LRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCD-SGICPDII 928
Query: 887 INPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELG 946
+NPH FPSRMT+ L+E +A K G L G+F T F S V ++
Sbjct: 929 MNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSK---------------VKDVC 973
Query: 947 EMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITR 1006
E L G+NY G + + SG+ G L I+ GPVYYQ+L+HMV DK R+ G +TR
Sbjct: 974 EDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTR 1033
Query: 1007 QPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIH 1066
QP +GR R GG+R GEMERD L+ +GA+ LL +RL SD DVC CG + + +
Sbjct: 1034 QPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLGYSGW-- 1091
Query: 1067 PQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLG 1126
CH C++S + ++ +PY + L EL +MNI L+L
Sbjct: 1092 ----------------------CHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLKLA 1129
>sp|Q8SR75|RPB2_ENCCU DNA-directed RNA polymerase II subunit RPB2 OS=Encephalitozoon
cuniculi (strain GB-M1) GN=RPB2 PE=3 SV=1
Length = 1141
Score = 384 bits (985), Expect = e-105, Method: Compositional matrix adjust.
Identities = 324/1140 (28%), Positives = 513/1140 (45%), Gaps = 155/1140 (13%)
Query: 36 DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN---FGQFPVMLKTRRCHLQGADSQK 92
+ R ++Y L DV + L V + +++ FG PVML++ C L G +
Sbjct: 93 NEARIRDLTYASPLFIDVTKETLSELGVVDKHKYSRVPFGSLPVMLRSSYCVLYGLGDKD 152
Query: 93 LVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCV 152
L+ L E + GGYFI+NG E+V I+ ++ + V + + YT A IR V
Sbjct: 153 LIDLGECPYDQGGYFIVNGSEKV----IVAQERMASNTVYVFKKAQPATYTHYAE-IRSV 207
Query: 153 ----RKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
++ S++++KL G +R+ L ++ +P+ ++ +AL +D EI +H+
Sbjct: 208 PEKSSRNPSTLSMKLCRS-PGVIRVSLPLVKQD--VPLFVLYRALGFLSDKEIIDHILYE 264
Query: 209 YDE------KYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGL 262
DE K E+G V VQD ++ L +IG+ P+ G
Sbjct: 265 DDEEMFELLKESIEEGTV---------------VQDQNVA-----LDYIGKRSAPI--GT 302
Query: 263 QSESYYAVAETVIRDYIFVHLNDN----NDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQN 318
E +A+ ++ + H+ K + +++Q+L + D+ D
Sbjct: 303 PQEKRIVMAKDLLAKEVLPHIGTQEFCETKKAYFIGYIVQRLLLVALGRRNPDDRDHYGK 362
Query: 319 QEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQI 378
+ + L G L+ + + + +Q IEN + FN+A K + I
Sbjct: 363 KRMDLSGPLLASLFRTLFKKLCVDTTRHMQKCIENGRE----FNIALGLK------ASII 412
Query: 379 GTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSV 438
L TG Q +Q RAG R NF+ +S R V+ G + +
Sbjct: 413 TQGFRYALATGNWGDQAKA-MQTRAGVAQVLNRYNFVSTLSHLRRVNTPIEKEG-KLAAP 470
Query: 439 RKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIG 498
R+L WG +CP TP+G+ CGL+ +++ + S S G + +F L
Sbjct: 471 RQLHNTHWGMVCPAETPEGQACGLVKNLSLMAYI-SVGSSSGPLVEF----------LEE 519
Query: 499 VGMIPSLPKLVKSGPPAVLSVLLDGRVVGV--IPSSEIEKVVAHLRRLKVSAASVIPDDL 556
G + SL ++ S A + ++G VG+ P I+ + R L++ I D+
Sbjct: 520 CG-VESLEEISTSQLDAATKIFVNGVWVGIHSDPVGLIKSLKLLRRSLEMDKEVSIVRDI 578
Query: 557 EVGYVPLSLGGAYPGL-YLFTSPPKFV---RPVRNISLPSEESQNIELIGPFEQVFMEIR 612
+ + P L K V +R + + N+ G E F+++
Sbjct: 579 REKEIRVQSDAGRPCRPLLVVKDNKLVITAEDIRKLKRGEIKWDNLVTSGFIE--FLDVE 636
Query: 613 -------------CPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQ 659
D + TH EIHP +L + A+ P+ DHNQSPRN YQ
Sbjct: 637 EEEMSMIAMNTKILADESRNSSDVSVSYTHCEIHPALILGICASTIPFPDHNQSPRNTYQ 696
Query: 660 CQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAY 719
M KQ MG R D L PQ P+V T + E P+G NA+VA+ Y
Sbjct: 697 SAMGKQAMGIYATNFLLRMDTLSNILFYPQKPLVTTKSMEYLRFKELPSGQNALVAIACY 756
Query: 720 TGYDMEDAMILNKSSVDRGMCHGQIYQTETID-------LSDDGNKVDRGQKLFRRNKDA 772
+GY+ ED++I+N+S++DRG+ Y+T T ++++ K RG L +N +
Sbjct: 757 SGYNQEDSIIMNQSAIDRGLFRSFFYRTYTDQESMSRPGVNEEFCKPSRGAVLRMKNLN- 815
Query: 773 KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSR--KGSESV 819
++ +D DGL +G++ +P S + ++ +S + +E+
Sbjct: 816 ---YNKLDDDGLISPGTRVTGDDVLIGKITPILDPERSTKEAPVYVYKDSSTAMRRTETG 872
Query: 820 FVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVT 879
VD V V K+ + ++ R R P +GDKF+SRH QKG DMPF+
Sbjct: 873 IVDTVIVTNKDGYKF---SKVKVRSGRIPQMGDKFASRHAQKGTIGITLRQEDMPFTS-E 928
Query: 880 GMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESK 939
G+ PD+IINPHA PSRMTI L+E + K ++ G+ DATPF S
Sbjct: 929 GIVPDIIINPHAIPSRMTIGHLIECLLGKVSAMSGEEGDATPF---------------SG 973
Query: 940 SLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTG 999
VD + L++ GF G+EV+Y+G+ G +L ++F GP YYQRL+HMV DK R+ G
Sbjct: 974 VTVDGISSRLKSYGFQQRGLEVMYNGMTGRKLRAQMFFGPTYYQRLKHMVDDKIHARARG 1033
Query: 1000 TMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSV 1059
+ +TRQP++GR R GG+RFGEMERD +++HGA+ L +RL SD + VC CG
Sbjct: 1034 PLQILTRQPVEGRSRDGGLRFGEMERDCIISHGASAFLKERLMDVSDAYSCYVCDFCG-- 1091
Query: 1060 LTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
+ +GG K C C + + V +PY F+ L EL MNI
Sbjct: 1092 ------------LLAMGG------SKVNECKGCNNTTNVSMVEIPYAFKLLIQELMGMNI 1133
>sp|P30876|RPB2_HUMAN DNA-directed RNA polymerase II subunit RPB2 OS=Homo sapiens GN=POLR2B
PE=1 SV=1
Length = 1174
Score = 379 bits (974), Expect = e-104, Method: Compositional matrix adjust.
Identities = 324/1143 (28%), Positives = 511/1143 (44%), Gaps = 141/1143 (12%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G ++ ++ G+ P+ML++ C L G
Sbjct: 109 MPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ + +D + YT +
Sbjct: 169 RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGECR--S 223
Query: 151 CVRKD-QSSVTLKLYYLLNGSV---------RLGFWLQGKEYLLPVGIVLKALVDTNDLE 200
C+ + + T+ + L G R+ L + +P+ IV +AL +D +
Sbjct: 224 CLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRD 283
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +++ P + E VK L E + + L IG +
Sbjct: 284 ILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAKP 328
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A+ V++ + H+ ++ K L +M+ +L D+ D
Sbjct: 329 GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ L++ + Q I + GK F+ LA IK ++
Sbjct: 389 GNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFI-DRGKDFNL-ELA-IK-------TR 438
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I ++ L TG Q Q RAG + RL F +S R ++ G +
Sbjct: 439 IISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLA 496
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ ++ + IL L
Sbjct: 497 KPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ + + ++G VG+ + E+++ LR+L+ VS S
Sbjct: 546 EEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEVS 602
Query: 551 VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
+I D E + G L K + R+I E N +
Sbjct: 603 MIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVV 662
Query: 599 ELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656
E I E+ V + + D + TH EIHP+ +L V A++ P+ DHNQSPRN
Sbjct: 663 EYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRN 722
Query: 657 MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
YQ M KQ MG + R D + L PQ P+V T + E P G N+IVA+
Sbjct: 723 TYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAI 782
Query: 717 LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA---- 772
+YTGY+ ED++I+N+S+VDRG Y++ S G D+ + + ++
Sbjct: 783 ASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKG--FDQEEVFEKPTRETCQGM 840
Query: 773 -KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGSE 817
+++ +D DGL G + + ++ + TN R + SE
Sbjct: 841 RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSE 900
Query: 818 SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
+ VD V V + + IR R R P IGDKF+SRHGQKG C + DMPF+
Sbjct: 901 TGIVDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT- 957
Query: 878 VTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDE 937
G+ PD+IINPHA PSRMTI L+E + K + G+ DATPF ++V
Sbjct: 958 CEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVN---------- 1007
Query: 938 SKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRS 997
V ++ +L G++ G EVLY+G G ++T +IFIGP YYQRL+HMV DK R+
Sbjct: 1008 ----VQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRA 1063
Query: 998 TGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCG 1057
G + + RQP++GR R GG+RFGEMERD +AHGAA L +RL SD + VC+LCG
Sbjct: 1064 RGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCG 1123
Query: 1058 SVLTA-TFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAA 1116
+ A T H + C C+ + V MPY + L EL +
Sbjct: 1124 IMAIANTRTHTYE-------------------CRGCRNKTQISLVRMPYACKLLFQELMS 1164
Query: 1117 MNI 1119
M+I
Sbjct: 1165 MSI 1167
>sp|Q8CFI7|RPB2_MOUSE DNA-directed RNA polymerase II subunit RPB2 OS=Mus musculus GN=Polr2b
PE=2 SV=2
Length = 1174
Score = 379 bits (974), Expect = e-104, Method: Compositional matrix adjust.
Identities = 324/1143 (28%), Positives = 511/1143 (44%), Gaps = 141/1143 (12%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G ++ ++ G+ P+ML++ C L G
Sbjct: 109 MPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ + +D + YT +
Sbjct: 169 RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGECR--S 223
Query: 151 CVRKD-QSSVTLKLYYLLNGSV---------RLGFWLQGKEYLLPVGIVLKALVDTNDLE 200
C+ + + T+ + L G R+ L + +P+ IV +AL +D +
Sbjct: 224 CLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRD 283
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +++ P + E VK L E + + L IG +
Sbjct: 284 ILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAKP 328
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A+ V++ + H+ ++ K L +M+ +L D+ D
Sbjct: 329 GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ L++ + Q I + GK F+ LA IK ++
Sbjct: 389 GNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFI-DRGKDFNL-ELA-IK-------TR 438
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I ++ L TG Q Q RAG + RL F +S R ++ G +
Sbjct: 439 IISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLA 496
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ ++ + IL L
Sbjct: 497 KPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ + + ++G VG+ + E+++ LR+L+ VS S
Sbjct: 546 EEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEVS 602
Query: 551 VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
+I D E + G L K + R+I E N +
Sbjct: 603 MIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVV 662
Query: 599 ELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656
E I E+ V + + D + TH EIHP+ +L V A++ P+ DHNQSPRN
Sbjct: 663 EYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRN 722
Query: 657 MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
YQ M KQ MG + R D + L PQ P+V T + E P G N+IVA+
Sbjct: 723 TYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAI 782
Query: 717 LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA---- 772
+YTGY+ ED++I+N+S+VDRG Y++ S G D+ + + ++
Sbjct: 783 ASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKG--FDQEEVFEKPTRETCQGM 840
Query: 773 -KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGSE 817
+++ +D DGL G + + ++ + TN R + SE
Sbjct: 841 RHAIYEKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSE 900
Query: 818 SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
+ VD V V + + IR R R P IGDKF+SRHGQKG C + DMPF+
Sbjct: 901 TGIVDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT- 957
Query: 878 VTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDE 937
G+ PD+IINPHA PSRMTI L+E + K + G+ DATPF ++V
Sbjct: 958 CEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVN---------- 1007
Query: 938 SKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRS 997
V ++ +L G++ G EVLY+G G ++T +IFIGP YYQRL+HMV DK R+
Sbjct: 1008 ----VQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRA 1063
Query: 998 TGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCG 1057
G + + RQP++GR R GG+RFGEMERD +AHGAA L +RL SD + VC+LCG
Sbjct: 1064 RGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCG 1123
Query: 1058 SVLTA-TFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAA 1116
+ A T H + C C+ + V MPY + L EL +
Sbjct: 1124 IMAIANTRTHTYE-------------------CRGCRNKTQISLVRMPYACKLLFQELMS 1164
Query: 1117 MNI 1119
M+I
Sbjct: 1165 MSI 1167
>sp|Q10578|RPB2_CAEEL DNA-directed RNA polymerase II subunit RPB2 OS=Caenorhabditis elegans
GN=rpb-2 PE=2 SV=2
Length = 1193
Score = 370 bits (949), Expect = e-101, Method: Compositional matrix adjust.
Identities = 321/1146 (28%), Positives = 503/1146 (43%), Gaps = 148/1146 (12%)
Query: 34 MFDHCRQAKISYTGKLMADVE--FQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQ 91
M + R ++Y L D+ D+ + V ++ G+ PVML++ C L +
Sbjct: 116 MPNEARLRNLTYASPLYVDITKVVTRDDSATEKVYDKVFVGKVPVMLRSSYCMLSNMTDR 175
Query: 92 KLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC 151
L L E + GGYF++NG E+V +I ++ ++ S +D + Y K C
Sbjct: 176 DLTELNECPLDPGGYFVINGSEKV---LIAQEKMATNTVYVFSMKDGK--YAFKTECRSC 230
Query: 152 VRKD-QSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLEI 201
+ + + T+ + L G G+ + +P+ IV +AL +D +I
Sbjct: 231 LENSSRPTSTMWVNMLARGGGGGKKTAMGQRIIGILPYIKQEIPIMIVFRALGFVSDRDI 290
Query: 202 FNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEH-FQPVID 260
H+ YD P + E VK L E + + L IG +P
Sbjct: 291 LGHII--YD---------FNDPEMMEMVKPSLDEA--FVIQEQNVALNFIGARGAKP--- 334
Query: 261 GLQSESYYAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A +++ + H+ + K + +M+ +L D+ D +
Sbjct: 335 GVTREQRIKYAREILQKELLPHVGVSEHCETKKAFFIGYMVHRLLLAALGRRELDDRDHI 394
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + + L++ + Q I N D F L K +
Sbjct: 395 GNKRLDLAGPLLAFLFRSLFRNLLKEMRMTAQKYINKN----DDFALDVCVK------TS 444
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I + L TG Q Q RAG + RL + +S R + G +
Sbjct: 445 TITRGLTYSLATGNWGDQKKAH-QSRAGVSQVLNRLTYTATLSHLRRANSPIGREG-KLA 502
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G+ GL+ ++ Y S G++ + IL L
Sbjct: 503 KPRQLHNTQWGMVCPAETPEGQAVGLVKNLALMA-----YISVGSLPE------PILEFL 551
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ S + ++G VG+ E ++++ L++L+ VS S
Sbjct: 552 EEWSM-ENLEEVSPSAIADATKIFVNGAWVGI--HREPDQLMTTLKKLRRQMDIIVSEVS 608
Query: 551 VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------- 597
++ D + + G L K R+I E +
Sbjct: 609 MVRDIRDREIRIYTDAGRVCRPLLIVENQKLALKKRHIDQLKEAADEANKYTWSDLVGGG 668
Query: 598 -IELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSP 654
+ELI E+ + + D GG + TH EIHP +L V A++ P+ DHNQSP
Sbjct: 669 VVELIDSMEEETSMIAMMPEDLRSGGYCDTH--THCEIHPAMILGVCASIIPFPDHNQSP 726
Query: 655 RNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIV 714
RN YQ M KQ MG R D + L PQ P+V T + +E P G NAIV
Sbjct: 727 RNTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFNELPAGINAIV 786
Query: 715 AVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAK- 773
A+L+Y+GY+ ED++I+N S++DRG+ Y++ ++ N + ++L + K
Sbjct: 787 AILSYSGYNQEDSVIMNNSAIDRGLFRSVFYRSYR---DNEANLDNANEELIEKPTREKC 843
Query: 774 -----SLHSVIDSDGLPYVGQMIHPGEPYC-------SIYDKTTNSWRTNSRK------- 814
SL+ +D DG+ G + + I D S + ++
Sbjct: 844 SGMRHSLYDKLDEDGIISPGMRVSGDDVIIGKTVALPDIDDDLDASGKKYPKRDASTFLR 903
Query: 815 GSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMP 874
SE+ VD V + + + N + IR R R P IGDKF+SRHGQKG ++ DMP
Sbjct: 904 SSETGIVDQVMLSLNSDGN--KFVKIRMRSVRLPQIGDKFASRHGQKGTMGIMYRQEDMP 961
Query: 875 FSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTG 934
F+ G+ PD+IINPHA PSRMTI L+E + K + G+ DATPF ++V
Sbjct: 962 FTA-EGLTPDIIINPHAVPSRMTIGHLIECLQGKLSANKGEIGDATPFNDTVN------- 1013
Query: 935 TDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQ 994
V ++ +L G++ G EV+Y+G G +LT +IF GP YYQRL+HMV DK
Sbjct: 1014 -------VQKISGLLCEYGYHLRGNEVMYNGHTGKKLTTQIFFGPTYYQRLKHMVDDKIH 1066
Query: 995 VRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSD-YHVADVC 1053
R+ G + + RQP++GR R GG+RFGEMERD ++HGA L +RL SD YHV VC
Sbjct: 1067 SRARGPIQMMNRQPMEGRARDGGLRFGEMERDCQISHGATQFLRERLFEVSDPYHVY-VC 1125
Query: 1054 SLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAE 1113
+ CG ++ A C AC+ + V +PY + L E
Sbjct: 1126 NNCGLIVVANL------------------RTNSFECKACRNKTQVSAVRIPYACKLLFQE 1167
Query: 1114 LAAMNI 1119
L +M+I
Sbjct: 1168 LMSMSI 1173
>sp|P08266|RPB2_DROME DNA-directed RNA polymerase II subunit RPB2 OS=Drosophila
melanogaster GN=RpII140 PE=2 SV=2
Length = 1176
Score = 367 bits (942), Expect = e-100, Method: Compositional matrix adjust.
Identities = 322/1151 (27%), Positives = 509/1151 (44%), Gaps = 156/1151 (13%)
Query: 34 MFDHCRQAKISYTGKLMADV-EFQYLDAGSPV--VRERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + + ++ PV ++ G+ P+ML++ C L
Sbjct: 110 MPNEARLRNLTYSAPLYVDITKTKNVEGLDPVETQHQKTFIGKIPIMLRSTYCLLSQLTD 169
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + Y K +
Sbjct: 170 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGK--YAFKTEIRS 224
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + + GS + G+ + +P+ IV +AL D +
Sbjct: 225 CLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 284
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAE---VQDLSLTTRLQCLQHIGEHFQP 257
I H+ +D+ P + E VK L E VQ+ ++ L IG +
Sbjct: 285 ILEHIIYDFDD-----------PEMMEMVKPSLDEAFVVQEQNVA-----LNFIGA--RG 326
Query: 258 VIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNP 313
G+ + A+ +++ + H+ ++ K L +M+ +L D+
Sbjct: 327 ARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDR 386
Query: 314 DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKN 373
D N+ + L G L+ + ++ +++ + Q I+ GK F N++ ++ N
Sbjct: 387 DHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDR-GKDF------NLELAIKTN 439
Query: 374 PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
I + L TG Q Q RAG + RL F +S R V+ G
Sbjct: 440 I---ITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG- 494
Query: 434 RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
+ R+L WG LCP TP+G GL+ ++ ++ + IL
Sbjct: 495 KLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPIL 543
Query: 494 RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VS 547
L M +L ++ S + ++G VG+ + E+++A LR+L+ VS
Sbjct: 544 EFLEEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVS 600
Query: 548 AASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN---------- 597
S+I D + + G L + ++ + E N
Sbjct: 601 EVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKTHVEMLKERDYNNYSWQVLVAS 660
Query: 598 --IELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQ 652
+E I E+ M P + A+ T H EIHP +L V A++ P+ DHNQ
Sbjct: 661 GVVEYIDTLEEETVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQ 720
Query: 653 SPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNA 712
SPRN YQ M KQ MG + R D + L P P+V T + E P G N+
Sbjct: 721 SPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINS 780
Query: 713 IVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-------ETIDLSDDGNKVDRGQKL 765
IVA+L YTGY+ ED++ILN S+V+RG Y++ D ++ K RG
Sbjct: 781 IVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSENKRVGDQEENFEKPHRGTCQ 840
Query: 766 FRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT-----------TNSWRTNSR- 813
RN L D DG+ G + + + KT +N+ R + R
Sbjct: 841 GMRNAHYDKL----DDDGIIAPGIRVSGDD---VVIGKTITLPENDDELDSNTKRFSKRD 893
Query: 814 -----KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLW 868
+ SE+ VD V + + NS+ + IR R R P IGDKF+SRHGQKG C +
Sbjct: 894 ASTFLRNSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQY 951
Query: 869 PDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKK 928
DM F+ G+ PD+IINPHA PSRMTI L+E + K GS G+ DATPF ++V
Sbjct: 952 RQEDMAFT-CEGLAPDIIINPHAIPSRMTIGHLIECLQGKLGSNKGEIGDATPFNDAVN- 1009
Query: 929 TNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHM 988
V ++ L+ G++ G EV+Y+G G ++ ++F+GP YYQRL+HM
Sbjct: 1010 -------------VQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHM 1056
Query: 989 VSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYH 1048
V DK R+ G + + RQP++GR R GG+RFGEMERD ++HGAA L +RL SD +
Sbjct: 1057 VDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPY 1116
Query: 1049 VADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFR 1108
+C+ CG + A + C C+ + V +PY +
Sbjct: 1117 RVHICNFCGLIAIANLRN------------------NTFECKGCKNKTQISQVRLPYAAK 1158
Query: 1109 YLAAELAAMNI 1119
L EL +MNI
Sbjct: 1159 LLFQELMSMNI 1169
>sp|P31814|RPOB_THECE DNA-directed RNA polymerase subunit B OS=Thermococcus celer GN=rpoB
PE=3 SV=1
Length = 1122
Score = 363 bits (932), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 328/1211 (27%), Positives = 521/1211 (43%), Gaps = 217/1211 (17%)
Query: 15 LVRHHIESFDYMLDEGLSEMFDHCRQAK-------ISYTGKLMADVEFQY---------- 57
LVR H++S++ +D G+ E+ D K + + + + EFQ
Sbjct: 29 LVRQHLDSYNAFIDHGMQEVIDEFGGVKPDIPDFEVKFGKVRLGEPEFQEAQGQRKPLYP 88
Query: 58 LDA-------GSPVVRE-------------RFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
+DA +P+ E G+ P+MLK++ C L G ++L+ L
Sbjct: 89 MDARIRNLTYSAPIYLELIPVVNGVSQEAVEVRIGELPIMLKSKACRLYGLSDEELIKLG 148
Query: 98 EEAAEMGGYFILNGLERVFRSV-------ILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
E+ + GGYFI+NG ERV S+ L +++ + + + R GY +A++
Sbjct: 149 EDPKDPGGYFIVNGSERVIVSIEDLAPNKTLVERDERQNRIIAKCFSYRHGY--RALITV 206
Query: 151 CVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIV--LKALVDTNDLEIFNHLTCC 208
RKD LY L R PV V ++AL +D EI ++
Sbjct: 207 ERRKDGI-----LYVKLPNVPR------------PVKFVYVMRALGLLSDREIVEAVS-- 247
Query: 209 YDEKYKKEKGAVGSPLVSERVKIILAEVQDLS-LTTRLQCLQHIGEHFQPVIDGLQSESY 267
P + ++ ++D S +TT+ + L +IG+ P G E
Sbjct: 248 ------------DDPRIQH---VLFDNLEDASDVTTQEEALDYIGKLSLP---GQPKEYR 289
Query: 268 YAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILL 323
A+ +I + + H+ D K L M ++ L D+ D N+ + L
Sbjct: 290 LRRAQNIIDNNLLPHMGVEEKDRKAKAYYLGMMALRVLELSLGLRGEDDKDHYANKRLKL 349
Query: 324 PGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIE 383
G L+ + ++ + + + G+++ F N+ V + IE
Sbjct: 350 AGDLLMDLFRVAFGQLVKDMQYQMTKTYQRKGERYTFENIQRF--VRNSIRPDVLSERIE 407
Query: 384 TMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLP 443
L TG R G + +R N++ +S R V S + R L
Sbjct: 408 HALATGSWPGG-------RTGVSQLLDRTNYISTLSHLRRVTSPLSREQPHFEA-RDLHG 459
Query: 444 ESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP 503
WG +CP TP+G CGL+ ++ ++ + +R++ L +G++P
Sbjct: 460 THWGRICPTETPEGPNCGLVKNLALMSQITTGVPEE-EVREY----------LERLGVVP 508
Query: 504 SLPKLVKSGP-PAVLSVLLDGRVVGVIPSSE--IEKVVAHLRRLKVS----AASVIPDDL 556
+ + P P + + L+G +VG + E + ++ R K+S A +D+
Sbjct: 509 ----IEERRPNPDLWRLYLNGVLVGTVEDGEGFVNRIRTDRRSGKISDIINVALYQDEDV 564
Query: 557 EVGYVPLSLGGAY-PGLYLFTSPPKFVRP-VRNISLPSEESQNIELIGPFEQVFMEIRCP 614
+ YV G P + + PK R V I S ++ +G E + E
Sbjct: 565 KEIYVNSDDGRVRRPLIIVENGRPKLTREHVEAIKNGSLTWSDLVKMGVIEYLDAE---- 620
Query: 615 DGGDGGRRNAFPAT----------HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAK 664
NA AT H E+ P +L + A+L PY +HN PRN Y MAK
Sbjct: 621 -----EEENALVATWPWEVTEEHTHLELMPAAILGIPASLVPYPEHNARPRNTYGAGMAK 675
Query: 665 QTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDM 724
Q++G + R D + + + PQ P+V + G +E P G N +VAVL+Y GY+M
Sbjct: 676 QSLGLGWANFRIRVDTRGHLMHYPQVPLVNSRIMKAVGFEERPAGQNFVVAVLSYAGYNM 735
Query: 725 EDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVDR------------GQKLFRRNKD 771
EDA+I+NK+S++RG+ ++T E + G + DR G++ +R
Sbjct: 736 EDAIIMNKASIERGLARSTFFRTYEAEEKRYLGGQTDRFEIPDPTIQGYLGERYYRH--- 792
Query: 772 AKSLHSVIDSDGLPY-----------VGQMIHPG--EPYCSIYDKTTNSWRTNSR--KGS 816
+D DG+ + VG+ P E + R S + S
Sbjct: 793 -------LDEDGIIFPESKVNGKDVLVGRTSPPRFLEEQSGLGGIILQERRETSLTVRPS 845
Query: 817 ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS 876
E+ VD V + + + + + R R P GDKF+SRHGQKGV + P DMP++
Sbjct: 846 ETGVVDKVII--TETGDGTKLVKVTTRDLRIPEFGDKFASRHGQKGVIGLIVPQEDMPWT 903
Query: 877 GVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTD 936
+G+ PDLI+NPH PSRMT+ L+E++ K SL G+ +D T F ++
Sbjct: 904 E-SGIVPDLIVNPHGIPSRMTVGQLIEAIGGKVASLKGRRVDGTAFIGEPEEKLRKELE- 961
Query: 937 ESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVR 996
GF + G EV+Y G+ G L ++F+G +YYQRL HMV+DK R
Sbjct: 962 --------------ELGFKHSGREVMYDGITGRRLEADVFVGVIYYQRLHHMVADKMHAR 1007
Query: 997 STGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLC 1056
S G + +T+QP +GR R GG+RFGEMERD L+ HGAA LL +RL SD VC C
Sbjct: 1008 SRGPVQVLTKQPTEGRAREGGLRFGEMERDVLIGHGAAMLLIERLLEESDKTEVWVCENC 1067
Query: 1057 GSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAA 1116
G + + ++R KV C C + + V M Y F+ L EL A
Sbjct: 1068 GHIA----LEDKRRG--------------KVYCPVCGEEERISKVEMSYAFKLLLDELKA 1109
Query: 1117 MNIKITLQLGD 1127
M I+ +L+L D
Sbjct: 1110 MGIRPSLKLVD 1120
>sp|P11513|RPOB_SULAC DNA-directed RNA polymerase subunit B OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rpoB PE=3 SV=2
Length = 1126
Score = 347 bits (890), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 303/1119 (27%), Positives = 494/1119 (44%), Gaps = 161/1119 (14%)
Query: 61 GSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVI 120
G P+ G P+MLK+ KL+ + E+ + GGYFI+NG E+V I
Sbjct: 107 GEPI---EIYIGDLPIMLKSVADPTSNLPIDKLIEIGEDPKDPGGYFIVNGSEKV----I 159
Query: 121 LPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFW-LQG 179
+ +++ + V + T A V + V ++ L + ++++ F + G
Sbjct: 160 IAQEDLATNRVLVDYGKSGSNITHVAKVTSSAAGYRVQVMIE--RLKDSTIQISFATVPG 217
Query: 180 KEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDL 239
+ +P I+++AL D +I D + + E ++ + Q
Sbjct: 218 R---IPFAIIMRALGFVTDRDIV--YAVSLDPQIQNE--------------LLPSLEQAS 258
Query: 240 SLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHL----NDNNDKFNLLIF 295
S+T+ + L IG V G + E+ AE VI Y HL D K L
Sbjct: 259 SITSAEEALDFIGNR---VAIGQKRENRIQKAEQVIDKYFLPHLGTSPEDRKKKGYYLAS 315
Query: 296 MLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQ--DEIEN 353
+ K+ L D+ D N+ + L G L T + + ++ K L+ ++ +
Sbjct: 316 AVNKILELYLGRREPDDKDHYANKRVRLAGDLFTSLFRVAFKAFV---KDLVYQLEKSKV 372
Query: 354 NGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLN 413
G++ L + E+ R A TG + R G + +R N
Sbjct: 373 RGRRLSLTALVRADIITERI----------------RHALATGNWVGGRTGVSQLLDRTN 416
Query: 414 FLRFISFFRAVHRGASFA-GLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRV 472
+L +S R V +S A G R L WG +CP TP+G GL+ ++ +V
Sbjct: 417 WLSMLSHLRRVV--SSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNLALLAQV 474
Query: 473 ASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPP---------AVLSVLLDG 523
+ + + + RV +G++ S+ +++ + V L+G
Sbjct: 475 SVGINE-----------SVVERVAYELGVV-SVEDVIRRISEQNEDVEKYMSWSKVYLNG 522
Query: 524 RVVGVIPS-SEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFV 582
R++G E+ K + RR + D++ V Y+ +++ +
Sbjct: 523 RLLGYYEDGKELAKKIRESRR-----QGKLSDEVNVAYIATDYLNE---VHINCDAGRVR 574
Query: 583 RP--VRNISLPSEESQNIELIGPFEQVFME------IRCPDGGDGGRRNAFPA------- 627
RP + N P ++++I+ + E F + I D + NA+ A
Sbjct: 575 RPLIIVNNGTPLVDTEDIKKLKNGEITFDDLVKQGKIEFIDAEE--EENAYVALNPQDLT 632
Query: 628 ---THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
TH EI P+ +L ++A++ PY +HNQSPRN YQ MAKQ++G + R D + +
Sbjct: 633 PDHTHLEIWPSAILGIIASIIPYPEHNQSPRNTYQSAMAKQSLGLYASNYQIRTDTRAHL 692
Query: 685 LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG-- 742
L PQ P+V+T G ++ P G NAI+A+++YTGY+MED++I+NKSS++RGM
Sbjct: 693 LHYPQMPLVQTRMLGVIGYNDRPAGANAILAIMSYTGYNMEDSIIMNKSSIERGMYRSTF 752
Query: 743 -QIYQTETIDL----------SDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMI 791
++Y TE + + G K +G+ +R +D + ++ G + +
Sbjct: 753 FRLYSTEEVKYPGGQEDKIVTPEAGVKGYKGKDYYRLLEDNGVVSPEVEVKGGDVLIGKV 812
Query: 792 HPGEPYCSIYDKTTNSWRTNSR---KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNP 848
P + + + ++ + E+ VD V + N + +R R R P
Sbjct: 813 SPPRFLQEFKELSPEQAKRDTSIVTRHGENGIVDLVLITETLEGN--KLVKVRVRDLRIP 870
Query: 849 IIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
IGDKF++RHGQKGV L +DMP++ G+ PD+I+NPHA PSRMTI ++E++ K
Sbjct: 871 EIGDKFATRHGQKGVVGILIDQVDMPYTA-KGIVPDIILNPHALPSRMTIGQIMEAIGGK 929
Query: 909 GGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYG 968
+L GK +DATPF + K + E+ + + G EV+Y G G
Sbjct: 930 YAALSGKPVDATPFLETPK--------------LQEMQKEILKLGHLPDSTEVVYDGRTG 975
Query: 969 TELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSL 1028
+L I G VYYQ+L HMV+DK R+ G + +TRQP +GR R GG+RFGEMERD L
Sbjct: 976 QKLKSRILFGIVYYQKLHHMVADKMHARARGPVQILTRQPTEGRAREGGLRFGEMERDCL 1035
Query: 1029 LAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVT 1088
+ G A L+ DRL SD V +C CG V R+ +
Sbjct: 1036 IGFGTAMLIKDRLLDNSDKAVVYICDQCGYVGWYD------------------RSKNRYV 1077
Query: 1089 CHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
C + V + Y F+ L EL +M I L LG+
Sbjct: 1078 CPVHGDKSVLHPVTVSYAFKLLIQELMSMVISPRLILGE 1116
>sp|Q197F1|RPB2_IIV3 Probable DNA-directed RNA polymerase II subunit RPB2 homolog
OS=Invertebrate iridescent virus 3 GN=IIV3-009R PE=3 SV=1
Length = 1140
Score = 332 bits (852), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 325/1229 (26%), Positives = 515/1229 (41%), Gaps = 216/1229 (17%)
Query: 4 KKSADFEPLRELVRHHIESFDYMLDEGLSEMFDH-------------------------- 37
K AD+ LV+H IE+F++ + +GL + ++
Sbjct: 21 KIVADYFKTNGLVKHQIETFNHFISKGLKTIINNESSIKYQSHDNYSLKFTNIYVEYPSI 80
Query: 38 --------------CRQAKISYTGKLMADV--EFQYLDAGSPVVRERFN--FGQFPVMLK 79
R +SYTG + +V + + P + E++ + P+ML
Sbjct: 81 IDDDRTIRDLYPQEARNKDLSYTGNVCVNVIEMVENKEGKPPQISEQYRVPIAKIPIMLG 140
Query: 80 TRRCHLQGADSQKLVSLKEEA------AEMGGYFILNGLERVFRSVILPKQNYPMSMVRS 133
+ CHL K L+ E A+ GGYFI+NG ERV S + N P+ V+S
Sbjct: 141 SDVCHLS-----KYTPLENEQINGHSQADQGGYFIINGKERVLISQVRKAYNKPVCFVKS 195
Query: 134 SFRDRREGYTDKAVVIRCVRKD-------QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPV 186
+ + K V+ C + +SV +K+ + + + L+ K +PV
Sbjct: 196 T--------SQKEDVLICEMRSMCEETFHSTSVQVKM---IKNKIMVSLKLKRKLIDIPV 244
Query: 187 GIVLKALVDTNDL------EIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQD-- 238
GIV K L D +FN +Y+K A+ + + E I D
Sbjct: 245 GIVFKCLGYNPDQMGSKFRSLFN-----LPPEYEKYIDAIKNDCLEEFAYGIAVSAADGD 299
Query: 239 -------LSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDY-------IFVHL- 283
+HI + F+ + + + A I D +F HL
Sbjct: 300 NSDSGGESGGEEEADQEEHIVKVFRNMSTSVDKDGGMAATGITIEDVQKSLDMDLFPHLG 359
Query: 284 --NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLR 341
+ + +LL FM++K + DN D ++ + G L + + +
Sbjct: 360 ITSTRKQRVDLLAFMVKKYLLTLTRKIPVDNRDDYNHKRVETAGELYSFLFRL----LYK 415
Query: 342 KGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQ 401
K +K +I N +K D N + I T I +G Q ++
Sbjct: 416 KFQKTCITQIRN--RKPDISNFLR---------TSGITTGILYSFSSGYWGVQRNTYIRT 464
Query: 402 RAGYTVQAERLNFLRFISFFRAVHRGASFAG--LRTTSVRKLLPESWGFLCPVHTPDGEP 459
V +++ L S R V S G +T+ +R++ P S +CPV TP+G+
Sbjct: 465 GVSQVVNP-KVSLLANYSSLRRVVIPESKDGKEAKTSEIRQIHPSSSFLVCPVETPEGKG 523
Query: 460 CGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSV 519
G + +M C+V + + I+ + G+ +K P L +
Sbjct: 524 VGTVLNMAVFCQVTTGIST-----------CEIMDQIDSFGVDLKCHCTIKD-PNNCLLL 571
Query: 520 LLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPP 579
L++G G + V+ L L + S++ V +LG + +F+
Sbjct: 572 LINGSPYG----NGHANVIHRLNFLNDTNISIV--------VNRALGV----IEIFSDAG 615
Query: 580 KFVRPVRNIS---------LPS----EESQNIELIGPFE----QVFMEIRCPDGGDGGRR 622
+F+RP+ ++ +PS ++Q I I E + +E+R R
Sbjct: 616 RFIRPIFDLDKICNFEGEIVPSFKWFLDNQLIRYIDINEAAANSIAIELRDLSTNPNTRY 675
Query: 623 NAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKL 682
N E+ P GM +VA + P+ D QS RN + M KQ +GF V + +
Sbjct: 676 NLM-----ELDPCGMFGIVAGIIPFPDRTQSARNCFYSSMVKQAIGF-VPCHNLKTETVS 729
Query: 683 YHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG 742
+ L PQ P+V T+ ++EYP G NAIVA+ YTGY+ ED++ILNKSS+DRG+
Sbjct: 730 HTLNYPQKPLVTTSFAEYNQLNEYPNGINAIVAIACYTGYNQEDSIILNKSSIDRGLFGT 789
Query: 743 QIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPY-CSIY 801
Y T T +G +R + K + ++ DG+ + Q + G+ C +
Sbjct: 790 ITYNTFTAQEKKNGIIEERIEIPSNAIKIRDCNYGLVGPDGIVRLRQRVKKGDVLICKVT 849
Query: 802 DKTTNSWRTNSRKGSESVFVD-----YVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSS 856
K N + + SV V YV + N + + + R P IGDKF S
Sbjct: 850 IKNKNQ---DEKLVDSSVIVQHGEEGYVDRIVDNVIDGCRIVKVVIGQMRTPEIGDKFCS 906
Query: 857 RHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKF 916
QKG C ++P DMPF+ +GM PD+IINP+ PSRMTI ++ +V GK
Sbjct: 907 GMAQKGTCGMIFPQEDMPFTA-SGMTPDIIINPNCIPSRMTINQIISTVM-------GKL 958
Query: 917 MDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIF 976
P + + NG++ + S +++ EL L+ GF+ G EV+YSG G + IF
Sbjct: 959 YTVNP---NPRFRNGNSFQENSNTILKELCHHLKLNGFDPSGSEVMYSGFTGERIQSTIF 1015
Query: 977 IGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYL 1036
+GP YY RL+HMV DK RS G + + RQP GR +GGG+RFGEME+D +L HGA
Sbjct: 1016 MGPTYYHRLKHMVKDKMHARSHGQVTTLHRQPNCGRSQGGGLRFGEMEKDCILVHGATQF 1075
Query: 1037 LHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSK 1096
L++R+ SD DVC CG + + + KK CH C S
Sbjct: 1076 LNERMFLNSDPFQIDVCKDCGMMSSTS---------------------KK--CHHC-GSI 1111
Query: 1097 GMETVAMPYVFRYLAAELAAMNIKITLQL 1125
++ +PY + L EL M IK + L
Sbjct: 1112 NVKRCNIPYSCKNLLQELNGMGIKTKIDL 1140
>sp|Q54IZ9|RPC2_DICDI DNA-directed RNA polymerase III subunit rpc2 OS=Dictyostelium
discoideum GN=polr3b PE=3 SV=1
Length = 1608
Score = 323 bits (828), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 196/518 (37%), Positives = 271/518 (52%), Gaps = 61/518 (11%)
Query: 627 ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQ 686
TH EI P ML VA L PY HNQSPRN YQC M KQ +G R D LY L
Sbjct: 1134 TTHLEIEPFTMLGCVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLTRIDTLLYLLV 1193
Query: 687 TPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQ 746
Q P+ +T T + P G NA VAV++Y+GYD+EDA+++NK+S+DRG + +
Sbjct: 1194 HTQRPLCQTRTIDLLNWYKLPAGHNATVAVMSYSGYDIEDALVMNKASLDRGFGRCIVLK 1253
Query: 747 TETIDLSDDGNKVDRGQKLF--RRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIY--- 801
+ + GN D ++F N + + ++DSDG+ G++ G+ + Y
Sbjct: 1254 KQVTSIKKHGN--DTSDRIFPPTPNDLRQPKYGLLDSDGIAKPGELAQKGQILVNKYSPL 1311
Query: 802 ---DKTTN-------SWRTN--SRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPI 849
D T N +++++ K F+D V + + + L K + R TR P
Sbjct: 1312 NTIDATPNPELIPDSAYKSSYMGYKYDNPAFIDKVLLTSGDDEQLLIK--MLMRSTRRPE 1369
Query: 850 IGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKG 909
+GDKFSSRHGQKGVC + DMPFS + G+ PD+I+NPH FPSRMTI ++E +A K
Sbjct: 1370 LGDKFSSRHGQKGVCGIIVKQEDMPFSDL-GICPDIIMNPHGFPSRMTIGKMIELLAGKA 1428
Query: 910 GSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGT 969
G L GKF T F GD + SK L+ + GF+Y G + + SGV G
Sbjct: 1429 GVLSGKFGFGTCFG-------GDRVENISKVLISK--------GFSYGGKDYVTSGVTGE 1473
Query: 970 ELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLL 1029
L C IF GP++YQ+L+HMV DK R+ G +TRQP +GR RGGG+R GEMERD L+
Sbjct: 1474 PLACFIFFGPIFYQKLKHMVMDKMHARARGPTVTLTRQPTEGRARGGGLRLGEMERDCLI 1533
Query: 1030 AHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTC 1089
+GA+ L+ +RL SD C CG + + C
Sbjct: 1534 GYGASALIMERLMISSDRFTVYACKNCGFLGYEGY------------------------C 1569
Query: 1090 HACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
C++S + T+ +PY + L EL AMNI L+L D
Sbjct: 1570 QYCKSSVDISTIQIPYACKLLFQELQAMNIVPRLKLVD 1607
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 103/444 (23%), Positives = 177/444 (39%), Gaps = 73/444 (16%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR ++Y+ + ++E Y + + + G P+ML++ C L +++ +L
Sbjct: 115 CRLRDMTYSAPIFVNIE--YTRNKQIISKRDVHIGNIPIMLRSSNCVLSKKTPEQMAALG 172
Query: 98 EEAAEMGGYFILNGLERVF---------RSVI-LPKQNYPMSMVRSSFRDRREGYTDKAV 147
E + GGYFI+ G E+V R +I + + P + V SS +
Sbjct: 173 ECPMDPGGYFIVRGQEKVILNHEQLSKNRIIIEMDSKGLPSASVTSSTHE---------- 222
Query: 148 VIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTC 207
RK ++ VTLK N + L G++ +PV IVLK + D E+
Sbjct: 223 -----RKSRTGVTLK-----NEKLYLKHNTFGED--IPVAIVLKGMGVETDQEM------ 264
Query: 208 CYDEKYKKEKGAVGSPLVS-ERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID--GLQ- 263
VGS V + L E Q + T Q L ++G + G+Q
Sbjct: 265 ---------AQLVGSDDVFLNAITPSLEECQKCGVHTAAQALDYLGSRIKVFRRPYGVQN 315
Query: 264 ----SESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQ 319
SE + V+ +++ V + K L M++++ S D+ D N+
Sbjct: 316 KKTKSEEARDILAGVVLNHVPVRRYNFRLKVIYLSLMIRRIIMASKDKSCLDDKDYYGNK 375
Query: 320 EILLPGHLITIYLKEKLEDWLRKGKKLIQDEI--ENNGKKFDFFNLANIKKVMEKNPSKQ 377
I L G LI++ ++ + + + KK + I N + D L + N
Sbjct: 376 RIELSGQLISLLFEDCFKKFQSELKKSVDQAIAKANRAENLDLPKLIRTDTIT--NGFTH 433
Query: 378 IGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS 437
+S + LK R+ +R+G + RL+++ + + + F R +
Sbjct: 434 AISSGQWNLKRFRM---------ERSGVSQVLSRLSYISCMGMMTRIQ--SQFEKTRKVA 482
Query: 438 -VRKLLPESWGFLCPVHTPDGEPC 460
R L P WG LCP TP+GE C
Sbjct: 483 GPRSLQPSQWGMLCPSDTPEGEAC 506
>sp|P38420|RPB2_ARATH DNA-directed RNA polymerase II subunit RPB2 OS=Arabidopsis thaliana
GN=RPB135 PE=2 SV=2
Length = 1188
Score = 322 bits (826), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 196/514 (38%), Positives = 262/514 (50%), Gaps = 65/514 (12%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EIHP+ +L V A++ P+ DHNQSPRN YQ M KQ MG V +FR D Y L
Sbjct: 702 THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYY 761
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+V T + P G NAIVA+ Y+GY+ ED++I+N+SS+DRG +++
Sbjct: 762 PQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRS 821
Query: 748 ETID-------LSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSI 800
+ + +D + DRG + R+ L D DGL G + GE I
Sbjct: 822 YRDEEKKMGTLVKEDFGRPDRGSTMGMRHGSYDKL----DDDGLAPPGTRV-SGEDV--I 874
Query: 801 YDKTT---------NSWRTNSR------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHT 845
KTT S R R + SE+ VD V + N+ L + +R R
Sbjct: 875 IGKTTPISQDEAQGQSSRYTRRDHSISLRHSETGMVDQVLL-TTNADGL-RFVKVRVRSV 932
Query: 846 RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
R P IGDKFSSRHGQKG + DMP++ + G+ PD+I+NPHA PSRMTI L+E +
Sbjct: 933 RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT-IEGVTPDIIVNPHAIPSRMTIGQLIECI 991
Query: 906 AAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSG 965
K + GK DATPF + VD + + L CG+ G E +Y+G
Sbjct: 992 MGKVAAHMGKEGDATPFTDVT---------------VDNISKALHKCGYQMRGFERMYNG 1036
Query: 966 VYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMER 1025
G LT IF+GP YYQRL+HMV DK R G + +TRQP +GR R GG+RFGEMER
Sbjct: 1037 HTGRPLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMER 1096
Query: 1026 DSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPK 1085
D ++AHGAA+ L +RL SD + VC +CG + A
Sbjct: 1097 DCMIAHGAAHFLKERLFDQSDAYRVHVCEVCGLIAIANL------------------KKN 1138
Query: 1086 KVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
C C+ + V +PY + L EL +M I
Sbjct: 1139 SFECRGCKNKTDIVQVYIPYACKLLFQELMSMAI 1172
Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 99/453 (21%), Positives = 184/453 (40%), Gaps = 59/453 (13%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAG--SPVVRERFNF-----GQFPVMLKTRRCHLQGADS 90
R ++Y+ L DV + + G V E +F G+ P+ML++ C L
Sbjct: 115 ARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLFQNSE 174
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+ V++ ++ + V F+ R+ +R
Sbjct: 175 KDLTELGECPYDQGGYFIINGSEK----VLIAQEKMSTNHV-YVFKKRQPNKYAYVGEVR 229
Query: 151 CVRKDQSS--VTLKLYYLLNGSVRLGFWLQGKEYL----------LPVGIVLKALVDTND 198
+ ++Q+ T+ + L S + G +Y+ +P+ IV +AL D
Sbjct: 230 SMAENQNRPPSTMFVRMLARASAKGG---SSGQYIRCTLPYIRTEIPIIIVFRALGFVAD 286
Query: 199 LEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV 258
+I H+ CYD + E ++ L E + +L L +IG+ V
Sbjct: 287 KDILEHI--CYD---------FADTQMMELLRPSLEEA--FVIQNQLVALDYIGKRGATV 333
Query: 259 IDGLQSESYYAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPD 314
G+ E A +++ + H+ + K +++ +L D+ D
Sbjct: 334 --GVTKEKRIKYARDILQKEMLPHVGIGEHCETKKAYYFGYIIHRLLLCALGRRPEDDRD 391
Query: 315 SLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNP 374
N+ + L G L+ + R + +Q + +NGK+ N++ ++
Sbjct: 392 HYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCV-DNGKE------VNLQFAIK--- 441
Query: 375 SKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLR 434
+K I + ++ L TG RAG + RL + +S R ++ G +
Sbjct: 442 AKTITSGLKYSLATGNWGQANAAG--TRAGVSQVLNRLTYASTLSHLRRLNSPIGREG-K 498
Query: 435 TTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMT 467
R+L WG +CP TP+G+ CGL+ ++
Sbjct: 499 LAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 531
>sp|Q02061|RPB2_SCHPO DNA-directed RNA polymerase II subunit RPB2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpb2 PE=1 SV=2
Length = 1210
Score = 321 bits (822), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 191/509 (37%), Positives = 263/509 (51%), Gaps = 53/509 (10%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EIHP +L ++A++ P+ DHNQSPRN YQ M KQ MG + + R D L
Sbjct: 728 THCEIHPAMILGILASIIPFPDHNQSPRNTYQSAMGKQAMGVYLTNYQVRMDTMANILYY 787
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+ T + E P G NAIVA+L Y+GY+ ED++I+N++S+DRG+ Y+T
Sbjct: 788 PQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSIIMNQASIDRGLFRSIFYRT 847
Query: 748 ETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDS---DGL-----PYVGQMIHPGEPYCS 799
T G V + R+ + H D DGL G+ I G+
Sbjct: 848 YTDQEKKIGMTVMEEFERPVRSTTLRMKHGTYDKLEDDGLIAPGTRVSGEDIIIGKTAPI 907
Query: 800 IYDKTTNSWRTNSR---------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPII 850
D RT + +ES VD V V N + L + +R R TR P I
Sbjct: 908 PLDHEELGQRTQLHAKRDVSTPLRSTESGIVDQVMV-TTNQEGL-KFVKVRMRSTRIPQI 965
Query: 851 GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGG 910
GDKF+SRHGQKG + DMPFS G+ PD+IINPHA PSRMT+A L+E +K
Sbjct: 966 GDKFASRHGQKGTIGMTYRHEDMPFSA-QGIVPDIIINPHAIPSRMTVAHLVECQLSKVS 1024
Query: 911 SLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTE 970
+L G DATPF + V+ + ++LR+ GF G EV+Y G G +
Sbjct: 1025 ALSGFEGDATPFTDVT---------------VEAVSKLLRSHGFQSRGFEVMYHGHTGRK 1069
Query: 971 LTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLA 1030
L ++F+GP YYQRL+H+V DK R+ G + +TRQP++GR R GG+RFGEMERD ++
Sbjct: 1070 LVAQVFLGPTYYQRLKHLVDDKIHARARGPVQILTRQPVEGRSRDGGLRFGEMERDCQIS 1129
Query: 1031 HGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCH 1090
HG + +L +RL CSD + VC +CG + A++ C
Sbjct: 1130 HGCSSVLRERLFDCSDAYRVIVCDICGLIAIASY------------------KKDSYECR 1171
Query: 1091 ACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
+CQ V +PY + L EL +MNI
Sbjct: 1172 SCQNRTRFSQVYLPYAAKLLFQELMSMNI 1200
Score = 80.1 bits (196), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 119/527 (22%), Positives = 202/527 (38%), Gaps = 67/527 (12%)
Query: 71 FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSM 130
G+ P+ML++ C L G +L L E + GGYFI+NG E+V I+ ++ ++
Sbjct: 152 IGKIPIMLRSTFCILNGVSDSELYDLNECPYDQGGYFIINGSEKV----IIAQERSAANI 207
Query: 131 VRSSFRDRREGYTDKAVVIRCVRKDQSSV--TLKLYYLLNGSVRLGFWLQGK-EYL---L 184
V+ F+ IR + S + ++++ + + G ++ Y+ +
Sbjct: 208 VQV-FKKAAPSPIAYVAEIRSALERGSRLISSMQIKLMARNTENSGQTIRATLPYIRSDI 266
Query: 185 PVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTR 244
P+ IV +AL D +I H+ CYD + + P + E I QD +
Sbjct: 267 PIVIVFRALGVVPDRDILEHI--CYDPN-DFQMLEMMKPCIEEAFVI-----QDKDI--- 315
Query: 245 LQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLND----NNDKFNLLIFMLQKL 300
L +IG+ G+ E A +++ + H+ K L +M+ ++
Sbjct: 316 --ALDYIGKRGSTT--GVTREKRLRYAHDILQKELLPHITTMEGFETRKAFFLGYMIHRM 371
Query: 301 FSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDF 360
D+ D + + L G L+ + R K +Q +E N +
Sbjct: 372 LLCALERREPDDRDHFGKKRLDLAGPLLASLFRMLFRKMTRDVYKYMQKCVETNRE---- 427
Query: 361 FNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISF 420
FNL K S I + L TG Q + R G + R F +S
Sbjct: 428 FNLTLAVK------SNIITNGLRYSLATGNWGDQKR-SMVNRVGVSQVLNRYTFASTLSH 480
Query: 421 FRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRG 480
R + G + R+L WG +CP TP+G+ CGL+ +++ V+ S
Sbjct: 481 LRRTNTPIGRDG-KLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYVSVGSPS-- 537
Query: 481 NIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV--IPSSEIEKVV 538
I+ L G+ +L S P V ++G +GV P+ E +
Sbjct: 538 ---------APIIEFLEEWGL-ETLEDYNPSASPNATKVFVNGVWLGVHRDPAHLTETLR 587
Query: 539 AHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV 585
+ RRL +SA I D+ L LFT + RP+
Sbjct: 588 SLRRRLDISAEVSIVRDIR-----------EKELRLFTDAGRICRPL 623
>sp|O27124|RPOB1_METTH DNA-directed RNA polymerase subunit B' OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rpoB1 PE=3 SV=1
Length = 603
Score = 321 bits (822), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 195/521 (37%), Positives = 270/521 (51%), Gaps = 58/521 (11%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EI P+ ML + A + P+++HN SPRN + M KQ +G R D + + L
Sbjct: 122 THLEIDPSTMLGICAGIIPFANHNSSPRNTMEAGMTKQALGLYASNYDLRTDTRAHLLHH 181
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ PIV+T G DE P+G N +VAV++Y GY+MEDA+ILNK+S++RG+ +++
Sbjct: 182 PQVPIVKTRIIDVTGYDERPSGQNFVVAVMSYEGYNMEDALILNKASLERGLARSSFFRS 241
Query: 748 -ETIDLSDDGNKVDR------GQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCS- 799
E + G + DR G + +R D + L D DG+ + G+
Sbjct: 242 YEAAERRYPGGQEDRFEIPEKGVRGYRSESDYRHL----DEDGIINPEAEVSSGDVLIGK 297
Query: 800 -----IYDKTTNSWRTNSRKGSESVFVDY------VAVDMKNSKNLPQKANIRFRHTRNP 848
++ R+ SV V + AV + + + A IR R R P
Sbjct: 298 TSPPRFLEEIDEFGTVAERRRETSVTVRHGEKGIVDAVLLTETVEGSRLAKIRVREQRQP 357
Query: 849 IIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+GDKF+SRHGQKGV + DMPF+ G+ PDLI+NPHA PSRM++ +LE +A K
Sbjct: 358 ELGDKFASRHGQKGVVGLIVSQEDMPFTE-DGIVPDLIVNPHAIPSRMSVGQVLEMLAGK 416
Query: 909 GGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYG 968
+ G+ +D TPF TG DE D++ E LR GF GVE LY+G+ G
Sbjct: 417 AACMEGRRVDGTPF----------TGEDE-----DDIKEALRANGFETAGVESLYNGITG 461
Query: 969 TELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSL 1028
+ EIFIG YYQ+L HM +DK RS G + +TRQP +GR R GG+RFGEMERD L
Sbjct: 462 ERIEAEIFIGVAYYQKLHHMTTDKVYARSRGPVQVLTRQPTEGRAREGGLRFGEMERDCL 521
Query: 1029 LAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVT 1088
+AHGAA L +RL SD + A VC+ CG + I +K
Sbjct: 522 IAHGAALALKERLLDESDKYEALVCADCGMIAVYDKIRDKK------------------Y 563
Query: 1089 CHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGDGA 1129
C C+ S+ V + Y F+ L EL ++ I L L D A
Sbjct: 564 CPICEDSESF-PVEVSYAFKLLLDELKSLCIFPKLILEDKA 603
>sp|Q42877|RPB2_SOLLC DNA-directed RNA polymerase II subunit RPB2 OS=Solanum lycopersicum
GN=RPB2 PE=2 SV=1
Length = 1191
Score = 320 bits (821), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 194/514 (37%), Positives = 259/514 (50%), Gaps = 65/514 (12%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EIHP+ +L V A++ P+ DHNQSPRN YQ M KQ MG V +FR D Y L
Sbjct: 701 THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYY 760
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+V T + P G NAIVA+ Y+GY+ ED++I+N+SS+DRG +++
Sbjct: 761 PQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRS 820
Query: 748 ETID-------LSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSI 800
+ + +D + DR + R+ L D DGL G + GE I
Sbjct: 821 YRDEEKKMGTLVKEDFGRPDRASTMGMRHGSYDKL----DDDGLAPPGTRV-SGEDV--I 873
Query: 801 YDKTT---------------NSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHT 845
KTT + S + SE+ VD V + N+ L + +R R
Sbjct: 874 IGKTTPISQDDAQGQASRYTRKDHSTSLRHSETGMVDQVLL-TTNADGL-RFVKVRVRSV 931
Query: 846 RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
R P IGDKFSSRHGQKG + DMP++ V G+ PD+I+NPHA PSRMTI L+E +
Sbjct: 932 RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT-VEGITPDIIVNPHAIPSRMTIGQLIECI 990
Query: 906 AAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSG 965
K + GK DATPF + VD + + L CG+ G E +Y+G
Sbjct: 991 MGKVAAHMGKEGDATPFTDVT---------------VDNISKALHKCGYQMRGFETMYNG 1035
Query: 966 VYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMER 1025
G L+ IF+GP YYQRL+HMV DK R G + +TRQP +GR R GG+RFGEMER
Sbjct: 1036 HTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMER 1095
Query: 1026 DSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPK 1085
D ++AHGAA+ L +RL SD + VC CG + A
Sbjct: 1096 DCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANL------------------KKN 1137
Query: 1086 KVTCHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
C C+ + V +PY + L EL AM I
Sbjct: 1138 SFECRGCKNKTDIVQVHIPYACKLLFQELMAMAI 1171
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 98/452 (21%), Positives = 180/452 (39%), Gaps = 59/452 (13%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAG--SPVVRERFNF-----GQFPVMLKTRRCHLQGADS 90
R ++Y+ L DV + + G V E +F G+ P+ML++ C L
Sbjct: 114 ARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSE 173
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V ++ ++ + V F+ R+ +R
Sbjct: 174 KDLTELGECPLDQGGYFIINGSEKV----LIAQEKMSTNHV-YVFKKRQPNKYAFVAEVR 228
Query: 151 CVRKDQSS--VTLKLYYLLNGSVRLGFWLQGKEYL----------LPVGIVLKALVDTND 198
+ Q+ T+ + L S + G +Y+ +P+ IV +AL D
Sbjct: 229 SMADTQNRPPSTMFVRMLSRTSAKGG---SSGQYIRATLPYIRTEIPIIIVFRALGFVAD 285
Query: 199 LEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV 258
+I H+ CYD + E ++ L E + + L +IG+ V
Sbjct: 286 KDILEHI--CYD---------FNDTQMMELLRPSLEEA--FVIQNQQVALDYIGKRGATV 332
Query: 259 IDGLQSESYYAVAETVIRDYIFVHLND----NNDKFNLLIFMLQKLFSLVDHTSVSDNPD 314
G+ E A+ +++ + H+ K +++ +L D+ D
Sbjct: 333 --GVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRD 390
Query: 315 SLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNP 374
N+ + L G L+ + R + +Q + +NGK N++ ++
Sbjct: 391 HYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCV-DNGKD------VNLQFAIK--- 440
Query: 375 SKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLR 434
+K I + ++ L TG RAG + RL + +S R ++ G +
Sbjct: 441 AKTITSGLKYSLATGNWGQANAAGT--RAGVSQVLNRLTYASTLSHLRRLNSPIGREG-K 497
Query: 435 TTSVRKLLPESWGFLCPVHTPDGEPCGLLNHM 466
R+L WG +CP TP+G+ CGL+ ++
Sbjct: 498 LAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 529
>sp|Q6FLD5|RPB2_CANGA DNA-directed RNA polymerase II subunit RPB2 OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL
Y-65) GN=RPB2 PE=3 SV=1
Length = 1223
Score = 318 bits (815), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 193/510 (37%), Positives = 262/510 (51%), Gaps = 54/510 (10%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EIHP+ +L V A++ P+ DHNQSPRN YQ M KQ MG + FR D L
Sbjct: 738 THCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNFRMDTMANILYY 797
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+ T E P G NAIVA+ Y+GY+ ED+MI+N+SS+DRG+ +++
Sbjct: 798 PQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRS 857
Query: 748 ETIDLSDDGNKVDRGQKLFRRNKDAKSLHSV---IDSDGL--PYV---GQMIHPGEPYCS 799
G + + +R + H +D DGL P V G+ I G+
Sbjct: 858 YMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDEDGLIAPGVRVSGEDIIIGKTTPI 917
Query: 800 IYDKTTNSWRT---------NSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPII 850
D+ RT + +E+ VD V + N L + +R R T+ P I
Sbjct: 918 APDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLI-TTNQDGL-KFVKVRVRTTKVPQI 975
Query: 851 GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGG 910
GDKF+SRHGQKG + DMPF+ G+ PDLIINPHA PSRMT+A L+E + +K
Sbjct: 976 GDKFASRHGQKGTIGITYRREDMPFTA-EGIVPDLIINPHAIPSRMTVAHLIECLLSKVA 1034
Query: 911 SLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTE 970
+L G DA+PF + V+ + ++LR G+ G EV+Y+G G +
Sbjct: 1035 ALSGNEGDASPFTDIT---------------VEGISKLLREHGYQSRGFEVMYNGHTGKK 1079
Query: 971 LTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLA 1030
L +IF GP YYQRLRHMV DK R+ G M +TRQP++GR R GG+RFGEMERD ++A
Sbjct: 1080 LMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIA 1139
Query: 1031 HGAAYLLHDRLHTCSDYHVADVCSLCGSV-LTATFIHPQKRAIREIGGLPPARAPKKVTC 1089
HGAA L +RL SD +C +CG + + A H Q C
Sbjct: 1140 HGAAAFLKERLMEASDAFRVHICGICGLMSVIAKLNHNQ------------------FEC 1181
Query: 1090 HACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
C + + +PY + L EL AMNI
Sbjct: 1182 KGCDNKIDIYQIHIPYAAKLLFQELMAMNI 1211
Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 98/409 (23%), Positives = 166/409 (40%), Gaps = 47/409 (11%)
Query: 71 FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSM 130
G+ P+ML+++ C+L A L LKE +MGGYFI+NG E+V L Q
Sbjct: 165 IGRLPIMLRSKNCYLSDATESDLYKLKECPFDMGGYFIINGSEKV-----LIAQERSAGN 219
Query: 131 VRSSFRDRREGYTDKAVVIRCVRKDQ----SSVTLKLYYLLNGSVR-LGFWLQGKEYLLP 185
+ F+ IR + S++ +KLY + S R + L + +P
Sbjct: 220 IVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGRESSSARTIKATLPYIKQDIP 279
Query: 186 VGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAE---VQDLSLT 242
+ I+ +AL D EI H+ CYD V + E +K + + +QD
Sbjct: 280 IVIIFRALGIIPDGEILEHI--CYD---------VNDWQMLEMLKPCVEDGFVIQD---- 324
Query: 243 TRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLND----NNDKFNLLIFMLQ 298
R L IG + G++ E A+ +++ H+ + K L +M+
Sbjct: 325 -RETALDFIGRRGTAL--GIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMIN 381
Query: 299 KLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKF 358
+L D+ D + + L G L+ K +KL +D +
Sbjct: 382 RLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLF-------RKLTKDIFRYMQRTV 434
Query: 359 DFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFI 418
+ N N+K + +K I + ++ L TG Q + RAG + R + +
Sbjct: 435 EEANDFNMKLAIN---AKTITSGLKYALATGNWGEQKKA-MSSRAGVSQVLNRYTYSSTL 490
Query: 419 SFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMT 467
S R + G + R+L WG +CP TP+G+ CGL+ +++
Sbjct: 491 SHLRRTNTPIGRDG-KLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLS 538
>sp|P09845|RPOB1_METTW DNA-directed RNA polymerase subunit B' OS=Methanothermobacter
thermoautotrophicus (strain Winter) GN=rpoB1 PE=3 SV=2
Length = 604
Score = 317 bits (813), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 196/522 (37%), Positives = 278/522 (53%), Gaps = 59/522 (11%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EI P+ ML + A + P+++HN SPRN + M KQ +G R D + + L
Sbjct: 122 THLEIDPSTMLGICAGIIPFANHNSSPRNTMEAGMTKQALGLYASNYNLRTDTRAHLLHH 181
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ PIV+T G DE P+G N +VAV++Y GY+MEDA+ILNK+S++RG+ +++
Sbjct: 182 PQVPIVKTRIIDVTGYDERPSGQNFVVAVMSYEGYNMEDALILNKASLERGLARSSFFRS 241
Query: 748 -ETIDLSDDGNKVDR------GQKLFRRNKDAKSLHS--VID-----SDGLPYVGQMIHP 793
E + G + DR G + +R +D + L +I+ S G +G+ P
Sbjct: 242 YEATERRYPGGQEDRFEIPEKGVRGYRSERDYRHLDEDGIINPETEVSSGDVLIGKTSPP 301
Query: 794 G-----EPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNP 848
+ + ++ ++ + T R G E + VD AV + + + A IR R R P
Sbjct: 302 RFLEEIDEFGTVAERRRETSVT-VRHGEEGI-VD--AVLLTETVEGSRLAKIRVREQRQP 357
Query: 849 -IIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAA 907
IGDKF+SRHGQKGV + DMPF+ G+ PDLI+NPHA PSRM++ +LE +A
Sbjct: 358 EFIGDKFASRHGQKGVVGLIVSQEDMPFTE-DGVVPDLIVNPHAIPSRMSVGQVLEMLAG 416
Query: 908 KGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVY 967
K + G+ +D TPF TG +E +L E L+ GF GVE LY+G+
Sbjct: 417 KAACMEGRRVDGTPF----------TGEEEK-----DLKEALKANGFESAGVETLYNGIT 461
Query: 968 GTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDS 1027
G + EIFIG YYQ+L HM +D+ RS G + +TRQP +GR R GG+RFGEMERD
Sbjct: 462 GERIEAEIFIGVAYYQKLHHMTTDRIYARSRGPVQVLTRQPTEGRAREGGLRFGEMERDC 521
Query: 1028 LLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKV 1087
L+AHGAA L +RL SD + A VC+ CG + I +K
Sbjct: 522 LIAHGAALALKERLLDESDKYEALVCAECGMIAIYDKIRDKK------------------ 563
Query: 1088 TCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGDGA 1129
C C+ S+ V + Y F+ L EL ++ I L L D A
Sbjct: 564 YCPICEDSESF-PVEISYAFKLLLDELKSLCIFPKLVLEDKA 604
>sp|O28392|RPOB1_ARCFU DNA-directed RNA polymerase subunit B' OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=rpoB1 PE=4 SV=1
Length = 604
Score = 317 bits (813), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 198/523 (37%), Positives = 278/523 (53%), Gaps = 61/523 (11%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH E+ P+ ++ + PY++HN SPRN M KQ++G L +R D + + +Q
Sbjct: 122 THLELDPSLIVGICTGSIPYAEHNASPRNTMGAAMIKQSLGIPYSNLAWRTDTRGHLMQH 181
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ PIV T+T + DE P G N +VAVL+Y GY++EDA+I+NK SV+RG+ Y+T
Sbjct: 182 PQVPIVTTDTQVEIKFDERPAGQNFVVAVLSYEGYNIEDALIMNKGSVERGLGRSFFYRT 241
Query: 748 -ETIDLSDDGNKVDR----GQKL--FRRNKDAKSLHSVIDSDGLPYVGQMIHPGE----- 795
E+ ++ G + D+ G + FR ++ +D DGL + + P +
Sbjct: 242 YESEEMRYPGGQEDKFEIPGADISGFR----GAEAYAHLDEDGLIFPETEVGPDDVLIGR 297
Query: 796 --PYCSIYDKTTNSWRTNSRK-------GSESVFVDYVAVDMKNSKNLPQKANIRFRHTR 846
P + + T R+ +E VD AV + S+ + A +R R R
Sbjct: 298 TSPPRFLEEPTELGISPQKRRETSVTMRSNEKGVVD--AVFLMQSEGGSKLAKVRVRDLR 355
Query: 847 NPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVA 906
P +GDKF+SRHGQKGV L P+ DMPF+ +G+ PDLIINPHA PSRMT+ +LE +
Sbjct: 356 IPELGDKFASRHGQKGVVGLLVPEEDMPFT-ESGIVPDLIINPHAIPSRMTVGHVLEMIG 414
Query: 907 AKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGV 966
K GSL G+ +D + F +G++ D L L+ GF++ G EV+Y G+
Sbjct: 415 GKVGSLEGRRVDGSLF-------HGESEED--------LRATLKKYGFSHTGKEVMYDGI 459
Query: 967 YGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERD 1026
G +IF+G +YYQ+L HMVS K RS G + +TRQP +GR R GG+RFGEMERD
Sbjct: 460 TGRRYLVDIFVGVIYYQKLYHMVSSKIHARSRGPVQVLTRQPTEGRARKGGLRFGEMERD 519
Query: 1027 SLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKK 1086
L+ HGAA LL DRL SD VC CG V AT+ + + A
Sbjct: 520 VLIGHGAALLLKDRLLEESDKVEVWVCGNCGHV--ATYDYRRNTAY-------------- 563
Query: 1087 VTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGDGA 1129
CH C + V M Y F+ L EL +M I + LGD A
Sbjct: 564 --CHICDDESNIHKVEMSYAFKLLLDELKSMMIAPRIILGDKA 604
>sp|Q753Q4|RPB2_ASHGO DNA-directed RNA polymerase II subunit RPB2 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=RPB2 PE=3 SV=1
Length = 1222
Score = 315 bits (807), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 192/510 (37%), Positives = 259/510 (50%), Gaps = 54/510 (10%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EIHP+ +L V A++ P+ DHNQSPRN YQ M KQ MG + R D L
Sbjct: 737 THCEIHPSMILGVAASVIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYY 796
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+ T E P G NAIVA+ Y+GY+ ED+MI+N+SS+D G+ +++
Sbjct: 797 PQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDSGLFRSLFFRS 856
Query: 748 ETIDLSDDGNKVDRGQKLFRRNKDAKSLHSV---IDSDGLPYVGQMIH----------PG 794
G + + R + H +D DGL G + P
Sbjct: 857 YMDQEKRIGMSITESFEKPHRTNTLRMKHGTYEKLDDDGLIAPGVRVSGDDIIIGKTTPI 916
Query: 795 EPYCSIYDKTT--NSWRTNSR--KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPII 850
P + T +S R S + +E+ VD V + N + L + +R R T+ P I
Sbjct: 917 PPDAEELGQRTAFHSKRDASTPLRSTENGIVDQVLI-TTNQEGL-KFVKVRVRTTKVPQI 974
Query: 851 GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGG 910
GDKF+SRHGQKG + DMPF+ G+ PDLIINPHA PSRMT+A L+E + +K
Sbjct: 975 GDKFASRHGQKGTIGITYRREDMPFTA-EGVVPDLIINPHAIPSRMTVAHLIECLLSKVA 1033
Query: 911 SLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTE 970
+L G DA+PF + VD + ++LR G+ G EV+Y+G G +
Sbjct: 1034 ALSGNEGDASPFTDIT---------------VDGISKLLREHGYQSRGFEVMYNGHTGKK 1078
Query: 971 LTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLA 1030
L +IF GP YYQRLRHMV DK R+ G M +TRQP++GR R GG+RFGEMERD ++A
Sbjct: 1079 LMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIA 1138
Query: 1031 HGAAYLLHDRLHTCSDYHVADVCSLCG-SVLTATFIHPQKRAIREIGGLPPARAPKKVTC 1089
HGAA L +RL SD +C +CG + A H Q C
Sbjct: 1139 HGAAAFLKERLMEASDAFRVHICGICGLMTVVAKLKHNQ------------------FEC 1180
Query: 1090 HACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
C+ + V +PY + L EL AMNI
Sbjct: 1181 RGCKNKIDIYQVHIPYAAKLLFQELMAMNI 1210
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 100/426 (23%), Positives = 170/426 (39%), Gaps = 42/426 (9%)
Query: 52 DVEFQYLDAGSPVVRE-RFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILN 110
D++++ + S E + G+ P+ML+++ C L L LKE +MGGYFI+N
Sbjct: 142 DLKYEIIQEESEDTEEGKIFIGRVPIMLRSKYCLLDDLSESDLYRLKECPFDMGGYFIIN 201
Query: 111 GLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ----SSVTLKLYYL 166
G E+V L Q + F+ IR + S++ +KLY
Sbjct: 202 GSEKV-----LIAQERSAGNIVQVFKKSAPSPISHIAEIRSALEKGSRFISTLQVKLYGR 256
Query: 167 LNGSVR-LGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLV 225
+ R + L + +P+ I+ +AL D EI H+ CYD+ + + P V
Sbjct: 257 EGSTSRTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHI--CYDQN-DWQMLEMLKPCV 313
Query: 226 SERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLND 285
E I QD R L IG + G++ E A+ +++ H+
Sbjct: 314 EEGFVI-----QD-----RETALDFIGRRGTAL--GIKKEKRIQYAKDILQKEFLPHITQ 361
Query: 286 ----NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLR 341
+ K L +M+ +L D+ D + + L G L+ K R
Sbjct: 362 LEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTR 421
Query: 342 KGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQ 401
+ +Q +E K F N+K ++ + I ++ L TG Q +
Sbjct: 422 DILRFMQRSVE-EAKDF------NLKLAVK---ATTITAGLKYALATGNWGEQKKA-MSS 470
Query: 402 RAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCG 461
RAG + R + +S R + G + R+L WG +CP TP+G+ CG
Sbjct: 471 RAGVSQVLNRYTYSSTLSHLRRTNTPIGRDG-KLAKPRQLHNTHWGLVCPAETPEGQACG 529
Query: 462 LLNHMT 467
L+ +++
Sbjct: 530 LVKNLS 535
>sp|P08518|RPB2_YEAST DNA-directed RNA polymerase II subunit RPB2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPB2 PE=1 SV=2
Length = 1224
Score = 315 bits (807), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 195/513 (38%), Positives = 261/513 (50%), Gaps = 60/513 (11%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EIHP+ +L V A++ P+ DHNQSPRN YQ M KQ MG + R D L
Sbjct: 739 THCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYY 798
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+ T E P G NAIVA+ Y+GY+ ED+MI+N+SS+DRG+ +++
Sbjct: 799 PQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRS 858
Query: 748 ETIDLSDDGNKVDRGQKLFRRNKDAKSLHSV---IDSDGLPYVGQMIHPGEPYCSIYDKT 804
G + + +R + H +D DGL G + GE I KT
Sbjct: 859 YMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRV-SGEDV--IIGKT 915
Query: 805 T---------------NSWRTNSR--KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRN 847
T +S R S + +E+ VD V V N L + +R R T+
Sbjct: 916 TPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLV-TTNQDGL-KFVKVRVRTTKI 973
Query: 848 PIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAA 907
P IGDKF+SRHGQKG + DMPF+ G+ PDLIINPHA PSRMT+A L+E + +
Sbjct: 974 PQIGDKFASRHGQKGTIGITYRREDMPFTA-EGIVPDLIINPHAIPSRMTVAHLIECLLS 1032
Query: 908 KGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVY 967
K +L G DA+PF + V+ + ++LR G+ G EV+Y+G
Sbjct: 1033 KVAALSGNEGDASPFTDIT---------------VEGISKLLREHGYQSRGFEVMYNGHT 1077
Query: 968 GTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDS 1027
G +L +IF GP YYQRLRHMV DK R+ G M +TRQP++GR R GG+RFGEMERD
Sbjct: 1078 GKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDC 1137
Query: 1028 LLAHGAAYLLHDRLHTCSDYHVADVCSLCG-SVLTATFIHPQKRAIREIGGLPPARAPKK 1086
++AHGAA L +RL SD +C +CG + A H Q
Sbjct: 1138 MIAHGAASFLKERLMEASDAFRVHICGICGLMTVIAKLNHNQ------------------ 1179
Query: 1087 VTCHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
C C + + +PY + L EL AMNI
Sbjct: 1180 FECKGCDNKIDIYQIHIPYAAKLLFQELMAMNI 1212
Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 98/409 (23%), Positives = 167/409 (40%), Gaps = 47/409 (11%)
Query: 71 FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSM 130
G+ P+ML+++ C+L A L LKE +MGGYFI+NG E+V L Q
Sbjct: 167 IGRLPIMLRSKNCYLSEATESDLYKLKECPFDMGGYFIINGSEKV-----LIAQERSAGN 221
Query: 131 VRSSFRDRREGYTDKAVVIRCVRKDQ----SSVTLKLYYLLNGSVR-LGFWLQGKEYLLP 185
+ F+ IR + S++ +KLY S R + L + +P
Sbjct: 222 IVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGREGSSARTIKATLPYIKQDIP 281
Query: 186 VGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAE---VQDLSLT 242
+ I+ +AL D EI H+ CYD V + E +K + + +QD
Sbjct: 282 IVIIFRALGIIPDGEILEHI--CYD---------VNDWQMLEMLKPCVEDGFVIQD---- 326
Query: 243 TRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLND----NNDKFNLLIFMLQ 298
R L IG + G++ E A+ +++ H+ + K L +M+
Sbjct: 327 -RETALDFIGRRGTAL--GIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMIN 383
Query: 299 KLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKF 358
+L D+ D + + L G L+ K + + + +Q +E +
Sbjct: 384 RLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDIFRYMQRTVE---EAH 440
Query: 359 DFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFI 418
DF N+K + +K I + ++ L TG Q + RAG + R + +
Sbjct: 441 DF----NMKLAIN---AKTITSGLKYALATGNWGEQKKA-MSSRAGVSQVLNRYTYSSTL 492
Query: 419 SFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMT 467
S R + G + R+L WG +CP TP+G+ CGL+ +++
Sbjct: 493 SHLRRTNTPIGRDG-KLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLS 540
>sp|A5DHT2|RPB2_PICGU DNA-directed RNA polymerase II subunit RPB2 OS=Meyerozyma
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 /
JCM 1539 / NBRC 10279 / NRRL Y-324) GN=RPB2 PE=3 SV=3
Length = 1236
Score = 312 bits (799), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 193/511 (37%), Positives = 267/511 (52%), Gaps = 58/511 (11%)
Query: 629 HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTP 688
H EIHP+ +L V A++ P+ DHNQSPRN YQ M KQ MG + R D L P
Sbjct: 749 HCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYSVRMDTMANILYYP 808
Query: 689 QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
Q P+ T E P G NAIVA+ Y+GY+ ED+MI+N+SS+DRG+ ++T
Sbjct: 809 QKPLATTRAMEHLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRT- 867
Query: 749 TIDLSDDGNKVDRGQKLFRRNKDAKSL------HSVIDSDGL--PYV---GQMIHPGEPY 797
+DL + + + + F + + +L + +D DGL P + G+ I G+
Sbjct: 868 YMDL--EKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDGLIAPGIRVSGEDIIIGKTT 925
Query: 798 CSIYDKTTNSWRTNSR---------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNP 848
D RT + +ES VD V + + + + +R R T+ P
Sbjct: 926 PIPPDTEELGQRTQYHTKRDASTPLRSTESGIVDQVL--LTTNGDGAKFVKVRMRTTKVP 983
Query: 849 IIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
IGDKF+SRHGQKG + DMPF+ G+ PDLIINPHA PSRMT+A L+E + +K
Sbjct: 984 QIGDKFASRHGQKGTVGVTYRHEDMPFTS-QGIVPDLIINPHAIPSRMTVAHLIECLLSK 1042
Query: 909 GGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYG 968
SL G DA+PF TD + V +L LR G+ G EV+Y G G
Sbjct: 1043 VSSLSGLEGDASPF------------TDVTAEAVSKL---LREHGYQSRGFEVMYHGHTG 1087
Query: 969 TELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSL 1028
+L ++F GP YYQRLRHMV DK R+ G + +TRQP++GR R GG+RFGEMERD +
Sbjct: 1088 KKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCM 1147
Query: 1029 LAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVT 1088
+AHGAA L +RL SD VC +CG L + + +K +
Sbjct: 1148 IAHGAAGFLKERLMEASDAFRVHVCGVCG--LMSVIANLKK---------------NQFE 1190
Query: 1089 CHACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
C +C+ + + +PY + L EL AMNI
Sbjct: 1191 CRSCKNKTNIYQIHIPYAAKLLFQELMAMNI 1221
Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 121/525 (23%), Positives = 201/525 (38%), Gaps = 60/525 (11%)
Query: 71 FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSM 130
G+ P+ML+++ C L+ + LKE +MGGYF++NG E+V L Q +
Sbjct: 160 LGKVPIMLRSKFCMLRDLGEHEFYELKECPYDMGGYFVINGSEKV-----LIAQERSAAN 214
Query: 131 VRSSFRDRREGYTDKAVVIRCVRKDQ----SSVTLKLYYLLNGSVRLGFWLQGKEYL--- 183
+ F+ IR + SS+ +KLY S Y+
Sbjct: 215 IVQVFKKAAPSPISHVAEIRSALERGSRLISSMQIKLYGREEKSTSNRTIKATLPYIKED 274
Query: 184 LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTT 243
+P+ IV +AL D +I H+ CYD + + P V E I EV L
Sbjct: 275 IPIVIVFRALGIVPDGDILEHI--CYDAN-DWQMLEMLKPCVEEGFVIQEREVA-LDFIG 330
Query: 244 RLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNND----KFNLLIFMLQK 299
R L G++ E A+ +++ + ++ + K L +M+ +
Sbjct: 331 RRGAL------------GIKREKRIQYAKDILQKELLPNITQDEGFETRKAFFLGYMVNR 378
Query: 300 LFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFD 359
L D+ D + + L G L+ + + + +Q +EN+
Sbjct: 379 LLLCALERKEPDDRDHFGKKRLDLAGPLLASLFRILFKKLTKDIYNYMQRCVEND----K 434
Query: 360 FFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFIS 419
FNL K S+ I + L TG Q + RAG + R + +S
Sbjct: 435 VFNLTLAVK------SQTITDGLRYSLATGNWGEQKKA-MSSRAGVSQVLNRYTYSSTLS 487
Query: 420 FFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSR 479
R + G + R+L WG +CP TP+G+ CGL+ +++ ++ S
Sbjct: 488 HLRRTNTPIGRDG-KIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTPSE 546
Query: 480 GNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV--IPSSEIEKV 537
IL L GM P L V S P V ++G VG P+ ++ +
Sbjct: 547 -----------PILYFLEEWGMEP-LEDYVPSNSPDSTRVFVNGVWVGTHREPAHLVDTM 594
Query: 538 VAHLRRLKVS-AASVIPDDLEVGY-VPLSLGGAYPGLYLFTSPPK 580
+ RR +S S+I D E + + G Y L++ P+
Sbjct: 595 RSLRRRGDISPEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDDPE 639
>sp|Q54J75|RPB2_DICDI DNA-directed RNA polymerase II subunit rpb2 OS=Dictyostelium
discoideum GN=polr2b PE=3 SV=1
Length = 1170
Score = 308 bits (789), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 181/509 (35%), Positives = 255/509 (50%), Gaps = 53/509 (10%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EIHP+ +L + ++ P+ DHNQSPRN YQ M KQ MG + + R D + L
Sbjct: 690 THCEIHPSMILGICCSIIPFPDHNQSPRNTYQAAMGKQAMGVYITNYQLRMDTMAHVLFY 749
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+V T + E P G N VA+ Y+GY+ ED++ILN+S++DRG+ Y+
Sbjct: 750 PQKPLVTTRSMEYLHFRELPAGQNVCVAIACYSGYNQEDSVILNQSAIDRGLFRSMFYRA 809
Query: 748 ETIDLSDDGNKVDRGQKLFRRNKDAKSLHSV---IDSDGLPYVGQ-------MIHPGEPY 797
+ + ++ + R+ A H ID DGL G +I P
Sbjct: 810 YKDEQKKQTSLMEEVFEKPERDTCAGMRHGSYEKIDDDGLVAPGVRVAGDDIIIGKTTPL 869
Query: 798 CSIYDKTTNSWRTNSRK-------GSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPII 850
D R ++++ SE+ VD V + S + +R R R P I
Sbjct: 870 PPSDDDLGPKTRRHTKRDSSTALRSSETGIVDQVI--LTTSGEGFKFCKVRVRSMRVPQI 927
Query: 851 GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGG 910
GDKFSSRHGQKG C + D+PF+ V G+ PD+I+NPHA PSRMTI L+E + K
Sbjct: 928 GDKFSSRHGQKGTCGMAYRQEDLPFT-VEGIVPDIIVNPHAIPSRMTIGQLIECLLGKVS 986
Query: 911 SLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTE 970
+ G DATPF + V+ + + L G+ G EV+Y+G G
Sbjct: 987 ASTGDEGDATPFTDVT---------------VEAISQALHKIGYQMTGHEVMYNGHTGRR 1031
Query: 971 LTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLA 1030
+ +IFIGP YYQRL+HMV DK RS G + +TRQP++GR R GG+RFGEMERD +++
Sbjct: 1032 MDAQIFIGPTYYQRLKHMVDDKIHSRSRGPVQILTRQPVEGRSRDGGLRFGEMERDCMIS 1091
Query: 1031 HGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCH 1090
HGAA L +RL SD + +C +CG + A C
Sbjct: 1092 HGAAQFLKERLFDQSDSYRVHICDICGLIAIANL------------------KKNSFECR 1133
Query: 1091 ACQTSKGMETVAMPYVFRYLAAELAAMNI 1119
C+ + + MPY + L EL +M+I
Sbjct: 1134 RCKNKTQISQIRMPYAAKLLFQELMSMSI 1162
Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 97/415 (23%), Positives = 180/415 (43%), Gaps = 51/415 (12%)
Query: 65 VRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQ 124
V +R G+ P+ML+++ C L AD + L ++ E + + GGYFI+NG E+ V++ ++
Sbjct: 147 VLKRIFIGKVPIMLRSQYCMLNEADDRDLTTMGECSFDQGGYFIINGSEK----VLIAQE 202
Query: 125 NYPMSMVRSSFRDRREGYTDKAVVIRCVR---KDQSSVTLKLYYLLN-GSVRLGFWLQGK 180
+ V + Y+ A + C + S++ LK+ + N G V + +
Sbjct: 203 KMNNNHVYVFKKSPPSKYSYVAEIRSCQETGSRPTSTMYLKMLHNTNKGPVGIKATVPYI 262
Query: 181 EYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEV---- 236
+ +PV IV +AL D +I H+ CYD K + + P + E I EV
Sbjct: 263 KQDVPVIIVFRALGFVADKDILEHI--CYDFK-DAQMMDLMRPSLEESFVIQSQEVALDY 319
Query: 237 ---QDLSLTTRLQCLQHIGEHFQ-PVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNL 292
+ ++ TR Q ++ E Q ++ + +Y + YI L
Sbjct: 320 LGKRGSTMGTREQRIKFAREVLQKEMLPHVSVAEFYETKKAFYFGYI---------THRL 370
Query: 293 LIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIE 352
L+ L++ D+ D N+ + L G L+ ++ + + + +Q I+
Sbjct: 371 LLASLER--------RPLDDRDHFANKRLDLAGPLLGTLFRQLFKKLTKDVRLYLQRCID 422
Query: 353 NNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRL-ATQTGLDLQQRAGYTVQAER 411
K +F + +K SK I + ++ L TG ++++G ++G R
Sbjct: 423 ---KDKEFIASSAVK-------SKTITSGLKYSLATGNWGSSKSG---GTKSGVAQVLNR 469
Query: 412 LNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHM 466
L F +S R ++ G + R+L WG +CP TP+G+ CGL+ ++
Sbjct: 470 LTFASTLSHLRRLNTPIGREG-KLAKPRQLHNTHWGIVCPSETPEGQACGLVKNL 523
>sp|P41557|RPOB1_METVS DNA-directed RNA polymerase subunit B' OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=rpoB1 PE=3 SV=2
Length = 611
Score = 305 bits (780), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 193/532 (36%), Positives = 274/532 (51%), Gaps = 67/532 (12%)
Query: 625 FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
F TH EI P +L + A + PY +HN +PR M KQ++G + +K+R D + +
Sbjct: 120 FENTHVEIDPLVILGIGAGVAPYPEHNSAPRITMAAAMGKQSLGIPMANIKWRMDTRGHL 179
Query: 685 LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI 744
L PQ P+VRT G D+ P G N +VAV++Y GY+MEDA ++NK+S++RG+
Sbjct: 180 LHYPQVPLVRTKHQEILGFDKRPAGQNFVVAVMSYEGYNMEDAFVINKASLERGLGRSTF 239
Query: 745 YQT-ETIDLSDDGNKVDRGQKLFR--RNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIY 801
+++ E+ + G ++D+ + + R A+ + + DGL + + G+ I
Sbjct: 240 FRSYESFEKRYPGGQLDKFEVPEKGVRGYRAEEAYRNLGDDGLIDLESEVRSGD---VIL 296
Query: 802 DKT--------------TNSWRTNS----RKGSESVFVDYVAVDMKNSKNLPQKANIRFR 843
KT T S R ++ R G E V VD V + +K + +R R
Sbjct: 297 GKTSPPRFLEEQEITLQTKSQRRDTSVTIRHGEEGV-VDLVI--LSETKEGNRLGKVRVR 353
Query: 844 HTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLE 903
R P GDKF+SRHGQKGV + P D+PF+ G+ PDLIINPHA PSRMTI +LE
Sbjct: 354 DLRVPEFGDKFASRHGQKGVIGLVVPQEDLPFT-EDGVIPDLIINPHAIPSRMTIGQVLE 412
Query: 904 SVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLY 963
+ K GSL + +D T F+ + L L GF + G E +Y
Sbjct: 413 MIGGKVGSLECRRVDGTIFSGEGEWA---------------LRHALENYGFTHSGKETMY 457
Query: 964 SGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEM 1023
G G +L CEIF+G YYQ+L H+V+ K RS G + +TRQP +GR R GG+RFGEM
Sbjct: 458 DGKTGRKLECEIFVGVAYYQKLHHLVAGKIHARSRGPIQVLTRQPTEGRAREGGLRFGEM 517
Query: 1024 ERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARA 1083
ERD L+AHGAA LL +RL SD H VC+ CG + I KR ++
Sbjct: 518 ERDVLVAHGAALLLKERLLDESDPHEDYVCAKCGEIA----IFDYKRGMK---------- 563
Query: 1084 PKKVTCHAC------QTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGDGA 1129
C C Q ++ + V + Y F+ L EL +M I L+L D A
Sbjct: 564 ----FCPVCGESEDIQDNRKIPPVKIAYAFKLLLDELKSMGIDPKLKLKDRA 611
>sp|Q9LV32|RPD2B_ARATH DNA-directed RNA polymerase D subunit 2b OS=Arabidopsis thaliana
GN=NRPD2b PE=2 SV=1
Length = 1119
Score = 303 bits (776), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 301/1193 (25%), Positives = 516/1193 (43%), Gaps = 173/1193 (14%)
Query: 1 MARKKSADFEPLRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMA--DVEFQYL 58
+K + F L+ H + S+++ ++ GL +F+ + + ++ D +++Y
Sbjct: 25 FCKKAATSFFEEFGLISHQLNSYNFFIEHGLQNVFESFGDILVEPSFDVIKKKDGDWRYA 84
Query: 59 DAGSPVV--RERFNFGQ--------------------FPVMLKTRRCHL--QGADSQKLV 94
+V ++F GQ PVM+K+ C +G ++ K
Sbjct: 85 TVFKKIVIKHDKFKTGQDEYVEKEILDVKKQDILIGSIPVMVKSVLCKTSEKGKENCKKG 144
Query: 95 SLKEEAAEMGGYFILNGLERVF--------RSVILPKQNYPMSMVRSSFRDR---REGYT 143
+ A + GGYF++ G E+VF + + + + +S + R+R R
Sbjct: 145 NC---AFDQGGYFVIKGAEKVFIAQEQMCTKRLWISNSPWTVSFRSETKRNRFIVRLSEN 201
Query: 144 DKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFN 203
+KA + + K L +Y+L +PV ++ AL ++D E +
Sbjct: 202 EKAEDYKIMEK-----VLTVYFLSTE--------------IPVWLLFFALGVSSDKEAMD 242
Query: 204 HLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDL-SLTTRLQCLQHIGEHFQPVIDGL 262
+ + + ++ + L+ A + + ++ +C G + ++
Sbjct: 243 LIA------FDGDDASITNSLI--------ASIHEADAVCEAFRC----GNNALTYVEHQ 284
Query: 263 QSESYYAVAETV---IRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQ 319
+ + AE+V +R Y+F L K L +M++ L S +N DS +N+
Sbjct: 285 IKSTKFPPAESVDDCLRLYLFPCLQGLKKKARFLGYMVKCLLSAYAGKRKCENRDSFRNK 344
Query: 320 EILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIG 379
I L G L+ ++ L RK + +Q ++ +G ++K + + I
Sbjct: 345 RIELAGELLEREIRVHLAHARRKMTRAMQKQLSGDG---------DLKPIEHYLDASVIT 395
Query: 380 TSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVR 439
+ TG + +++ +G R N L+ + R + + G + R
Sbjct: 396 NGLNRAFSTGAW-SHPFRKMERVSGVVANLGRANPLQTLIDLRRTRQQVLYTG-KVGDAR 453
Query: 440 KLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGV 499
P WG +C + TPDGE CGL+ +M+ V++ + S++ +L
Sbjct: 454 HPHPSHWGRVCFLSTPDGENCGLVKNMSLLGLVST------------QGLESVVEMLFTC 501
Query: 500 GMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVG 559
GM L + VLL+G VG+ SE V L+ + S +P ++E+
Sbjct: 502 GM-EELMNDTSTPLCGKHKVLLNGDWVGLCADSE--SFVGELKSRR--RQSELPLEMEI- 555
Query: 560 YVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDG 619
+ +FT + +RP+ + + Q+ PF+ + + G
Sbjct: 556 ----KRDKDDNEVRIFTDAGRLLRPLLVVENLHKLKQDKPTQYPFKHLLDQGILELIGIE 611
Query: 620 GRRNAFPA-------------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQM-AKQ 665
+ A TH E+ + +L V + P+++H+ R +YQ Q +Q
Sbjct: 612 EEEDCTTAWGIKQLLKEPKNYTHCELDLSFLLGVSCAIVPFANHDHGKRVLYQSQKHCQQ 671
Query: 666 TMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDME 725
+GFS R D L PQ P+ +T + G NAIVAV + GY+ E
Sbjct: 672 AIGFSSTNPNIRCDTLSQQLFYPQKPLFKTLASECLEKEVLFNGQNAIVAVNVHLGYNQE 731
Query: 726 DAMILNKSSVDRGMCHGQIYQTETIDL-SDDGNKVDRGQKLFRRNKDAKSLHSV--IDSD 782
D++++NK+S++RGM + ++ ++ + D K + +L + K + V ++ D
Sbjct: 732 DSIVMNKASLERGMFRSEQIRSYKAEVDTKDSEKRKKMDELVQFGKTYSKIGKVDSLEDD 791
Query: 783 GLPYVGQMIHPGEPYCSIYDKTTNSWRTNS--RKGSESVFVDYVAVDMKNS-KNLPQKAN 839
G P++G + G+ + + T S +S K +E V V + + KN A
Sbjct: 792 GFPFIGANMSTGDI---VIGRCTESGADHSIKLKHTERGIVQKVVLSSNDEGKNF---AA 845
Query: 840 IRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIA 899
+ R R+P +GDKFSS HGQKGV L + PF+ + G+ PD++INPHAFPSR T
Sbjct: 846 VSLRQVRSPCLGDKFSSMHGQKGVLGYLEEQQNFPFT-IQGIVPDIVINPHAFPSRQTPG 904
Query: 900 MLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTG---------TDESKSLVDELGEMLR 950
LLE+ +KG A ++K G + T S V E+ E L
Sbjct: 905 QLLEAALSKG------------IACPIQKKEGSSAAYTKLTRHATPFSTPGVTEITEQLH 952
Query: 951 TCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIK 1010
GF+ G E +Y+G G + IF+GP +YQRL HM +K + R+TG + +TRQP+
Sbjct: 953 RAGFSRWGNERVYNGRSGEMMRSLIFMGPTFYQRLVHMSENKVKFRNTGPVHPLTRQPVA 1012
Query: 1011 GRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKR 1070
RKR GGIRFGEMERD L+AHGA+ LH+RL T SD +C C + A I
Sbjct: 1013 DRKRFGGIRFGEMERDCLIAHGASANLHERLFTLSDSSQMHICRKCKTY--ANVIERTPS 1070
Query: 1071 AIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITL 1123
+ R+I R P C C +S + V +PY + L EL +M I +
Sbjct: 1071 SGRKI------RGP---YCRVCASSDHVVRVYVPYGAKLLCQELFSMGITLNF 1114
>sp|P0CX03|RPOB1_HALSA DNA-directed RNA polymerase subunit B' OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=rpoB1 PE=3
SV=1
Length = 608
Score = 303 bits (776), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 184/519 (35%), Positives = 266/519 (51%), Gaps = 60/519 (11%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EI P + + A + PY +HN SPR M KQ++G + R D + + L
Sbjct: 125 THLEIDPQLIFGIGAGMIPYPEHNASPRITMGAGMMKQSLGLPAANYRIRPDTRQHLLHY 184
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ +V T T + G D+ P G N +VAV++Y G+++EDA+++NK SV+R + ++T
Sbjct: 185 PQKAMVNTQTTEQIGYDDRPAGQNFVVAVMSYEGFNIEDALVMNKGSVERALSRSHFFRT 244
Query: 748 -ETIDLSDDGNKVDR----GQKLFRRNKDAKSLHSVIDSDGLP-----------YVGQMI 791
E + G + DR G + R + ++ +D DGL +G+
Sbjct: 245 YEGEERRYPGGQEDRFEIPGDDV--RGARGEDAYTHLDDDGLVNPETKVDDSSVLLGKTS 302
Query: 792 HP-----GEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTR 846
P E + + R G + V VD V + ++ + A + R R
Sbjct: 303 PPRFLEEPEDMGGLSPQKRRETSVTMRSGEDGV-VDTVT--LMEGEDGSKLAKVSVRDER 359
Query: 847 NPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVA 906
P +GDKF+SRHGQKGV L P DMPF+ G+ PDL++NPHA PSRMT+ +LE +
Sbjct: 360 IPELGDKFASRHGQKGVVGHLAPQEDMPFT-QEGVVPDLVLNPHALPSRMTVGHVLEMLG 418
Query: 907 AKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGV 966
K GSL G+ +D TPF TG E DE+ L GF G EV+YSGV
Sbjct: 419 GKAGSLDGRSVDGTPF----------TGEGE-----DEIRGTLEDRGFKSSGKEVMYSGV 463
Query: 967 YGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERD 1026
G ++ EIF+G ++Y +L HMVS+K RS G + +TRQP +GR R GG+R GEMERD
Sbjct: 464 SGEKIEAEIFVGTIFYHKLYHMVSNKLHARSKGPVQVLTRQPTEGRAREGGLRVGEMERD 523
Query: 1027 SLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKK 1086
+++ HGAA +L +RL SD VC CG +TA + Q+R
Sbjct: 524 TVIGHGAAMVLKERLLDSSDREEIHVCGNCG--MTAVENYEQRR---------------- 565
Query: 1087 VTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
V C C+ + ++ M Y F+ L E+ A+ I L+L
Sbjct: 566 VYCPNCEEETDVHSIEMSYAFKLLLDEMKALGIAPRLEL 604
>sp|B0R8D5|RPOB1_HALS3 DNA-directed RNA polymerase subunit B' OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=rpoB1 PE=1 SV=1
Length = 608
Score = 303 bits (776), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 184/519 (35%), Positives = 266/519 (51%), Gaps = 60/519 (11%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EI P + + A + PY +HN SPR M KQ++G + R D + + L
Sbjct: 125 THLEIDPQLIFGIGAGMIPYPEHNASPRITMGAGMMKQSLGLPAANYRIRPDTRQHLLHY 184
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ +V T T + G D+ P G N +VAV++Y G+++EDA+++NK SV+R + ++T
Sbjct: 185 PQKAMVNTQTTEQIGYDDRPAGQNFVVAVMSYEGFNIEDALVMNKGSVERALSRSHFFRT 244
Query: 748 -ETIDLSDDGNKVDR----GQKLFRRNKDAKSLHSVIDSDGLP-----------YVGQMI 791
E + G + DR G + R + ++ +D DGL +G+
Sbjct: 245 YEGEERRYPGGQEDRFEIPGDDV--RGARGEDAYTHLDDDGLVNPETKVDDSSVLLGKTS 302
Query: 792 HP-----GEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTR 846
P E + + R G + V VD V + ++ + A + R R
Sbjct: 303 PPRFLEEPEDMGGLSPQKRRETSVTMRSGEDGV-VDTVT--LMEGEDGSKLAKVSVRDER 359
Query: 847 NPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVA 906
P +GDKF+SRHGQKGV L P DMPF+ G+ PDL++NPHA PSRMT+ +LE +
Sbjct: 360 IPELGDKFASRHGQKGVVGHLAPQEDMPFT-QEGVVPDLVLNPHALPSRMTVGHVLEMLG 418
Query: 907 AKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGV 966
K GSL G+ +D TPF TG E DE+ L GF G EV+YSGV
Sbjct: 419 GKAGSLDGRSVDGTPF----------TGEGE-----DEIRGTLEDRGFKSSGKEVMYSGV 463
Query: 967 YGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERD 1026
G ++ EIF+G ++Y +L HMVS+K RS G + +TRQP +GR R GG+R GEMERD
Sbjct: 464 SGEKIEAEIFVGTIFYHKLYHMVSNKLHARSKGPVQVLTRQPTEGRAREGGLRVGEMERD 523
Query: 1027 SLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKK 1086
+++ HGAA +L +RL SD VC CG +TA + Q+R
Sbjct: 524 TVIGHGAAMVLKERLLDSSDREEIHVCGNCG--MTAVENYEQRR---------------- 565
Query: 1087 VTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQL 1125
V C C+ + ++ M Y F+ L E+ A+ I L+L
Sbjct: 566 VYCPNCEEETDVHSIEMSYAFKLLLDEMKALGIAPRLEL 604
>sp|Q60181|RPOB1_METJA DNA-directed RNA polymerase subunit B' OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rpoB1 PE=3 SV=1
Length = 636
Score = 303 bits (775), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 184/521 (35%), Positives = 271/521 (52%), Gaps = 55/521 (10%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EI P +L + A + PY +HN +PR M KQ++G + +K+R D + ++L
Sbjct: 127 THLEIDPLTILGIGAGVAPYPEHNSAPRITMAAAMGKQSLGIPMSNIKWRLDTRGHYLHY 186
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ PIVRT G D+ P G N +VA+++Y GY+MEDA++ NKS++DRG+ ++T
Sbjct: 187 PQVPIVRTKHQEILGFDKRPAGQNFVVAIMSYEGYNMEDAIVFNKSAIDRGLGRSTFFRT 246
Query: 748 -ETIDLSDDGNKVDRGQKLFR--RNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT 804
+ + G ++DR + + R ++ + ++ DG+ V + G+ I KT
Sbjct: 247 YDACERRYPGGQMDRFEIPDKGVRGYRSEECYRYLEEDGIVAVESHVKGGD---VIVGKT 303
Query: 805 T--------------NSWRTNS----RKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTR 846
+ R +S R G E + + K L ++ R R
Sbjct: 304 SPPRFLEEHEITIQVKPQRRDSSVVVRHGEEGYIDKVILTETKEGNRL---VKVKVRDLR 360
Query: 847 NPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVA 906
P +GDKF+SRHGQKGV P D+PF+ +G+ PD+IINPHA PSRMT+ LLE +
Sbjct: 361 IPELGDKFASRHGQKGVMGLTVPQEDLPFTE-SGIVPDIIINPHAIPSRMTVGQLLEMLG 419
Query: 907 AKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGV 966
K G+L G+ +D T F+ G+ D K+L GF +HG EV+Y G
Sbjct: 420 GKVGALEGRRIDGTIFS-------GEKEWDLRKAL--------EALGFKHHGKEVMYDGK 464
Query: 967 YGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERD 1026
G + EI+IG YYQ+L H+V+ K RS G + +TRQP +GR R GG+RFGEMERD
Sbjct: 465 TGKKFEVEIYIGIAYYQKLHHLVAGKIHARSRGPVQVLTRQPTEGRAREGGLRFGEMERD 524
Query: 1027 SLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKK 1086
L+ HGAA LL +RL SD + +CS CG + KR ++ P
Sbjct: 525 VLIGHGAAMLLKERLMDESDPYDICICSKCGDFAILDY----KRGLK--------YCPIC 572
Query: 1087 VTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
+SK + V +PY F+ L EL +M I +++ D
Sbjct: 573 GEIENLYSSKKIPFVRIPYAFKLLLDELKSMCILPRIKVRD 613
>sp|Q03587|RPOB_THEAC DNA-directed RNA polymerase subunit B OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=rpoB PE=3 SV=1
Length = 1195
Score = 293 bits (749), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 184/526 (34%), Positives = 270/526 (51%), Gaps = 70/526 (13%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EI P +L VVA++ PY +HN SPR MAKQ++GF+ ++ R D + + L
Sbjct: 712 THLEIDPAMILGVVASIIPYPEHNSSPRITIASAMAKQSLGFAQSNVRIRPDTRGHLLHY 771
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+VRT D P G N +VAVL+Y GY+++DA+++NK++++RG+ ++T
Sbjct: 772 PQVPLVRTRVMDYIHYDRRPAGQNFVVAVLSYEGYNIQDALVINKAAIERGLGRSTFFRT 831
Query: 748 ETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPG----EPYCSIYD- 802
S + + GQ+ +K H +I + Y + G E Y D
Sbjct: 832 ----YSAEERRYPGGQE----DKFEIPTHDIIGARAEEYYKNLDDSGIIFPEAYVEGSDV 883
Query: 803 ---KTT--------------NSWRTNS--RKGSESVFVDYVAVDMKNSKNLPQKANIRFR 843
KT+ R +S + +ES +VD V + + S + + I+ R
Sbjct: 884 LIGKTSPPRFLEEGEERLGPQRRRESSVTMRPNESGYVDNVFLTVSESNS--RVVKIKVR 941
Query: 844 HTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLE 903
R P +GDKF+SRHGQKGV + P DMPF+ G+ PDLI NPH+ PSRMT+ +LE
Sbjct: 942 SERIPELGDKFASRHGQKGVVGLVVPQEDMPFTE-DGIIPDLIFNPHSIPSRMTVGHILE 1000
Query: 904 SVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLY 963
+ K S G+F+D T F+ +K+ L + L GF EV+Y
Sbjct: 1001 MIGGKIASRTGRFIDGTIFSGEPEKS---------------LRDALVKYGFRKSSTEVMY 1045
Query: 964 SGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEM 1023
G+ G +IF+G +YYQ+L HMV+ KF RS G + +TRQP +GR R GG+RFGEM
Sbjct: 1046 DGITGRRFKADIFVGVIYYQKLHHMVAGKFHARSRGPVQILTRQPTEGRSRQGGLRFGEM 1105
Query: 1024 ERDSLLAHGAAYLLHDRLHTCSDYHVADVCS--LCGSVLTATFIHPQKRAIREIGGLPPA 1081
ERD+L+AHGAA ++ DRL SD V VC CG + AI +
Sbjct: 1106 ERDTLIAHGAAMVIKDRLLDQSDGTVLYVCGNPSCGHI-----------AIYD------- 1147
Query: 1082 RAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127
R + C C + + + Y F+ + EL ++ + + L LGD
Sbjct: 1148 RRKGTLRCPVCGNTGNIYPIETSYAFKLMRDELISLGVVMRLMLGD 1193
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 100/509 (19%), Positives = 191/509 (37%), Gaps = 115/509 (22%)
Query: 58 LDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD----------------SQKLVSLKEEAA 101
++ GS +++ G PVM++++ C L + +KL + E+
Sbjct: 129 IEKGSEIIK----VGDLPVMVRSKICTLSEENLDQYIEKNNGPIGLSRREKLQYVGEDPD 184
Query: 102 EMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTL 161
+ GGYFI+ G ERV S+ ++ + + + DR E + + V ++
Sbjct: 185 DPGGYFIIGGSERVIVSL----EDLAPNKIMVEWEDRYESKVEVSKVFS--QRGGFRALT 238
Query: 162 KLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVG 221
+ +G++ + + +P+ I++KAL D+++ + +
Sbjct: 239 SMEKGTDGTINVS--IPSVAGTVPLVILMKALGLERDVDVHDAIAS-------------- 282
Query: 222 SPLVSERVKIILAEVQDLS---------LTTRLQCLQHIGEHFQPVIDGLQSESYYAVAE 272
V E II + ++D + T + ++ + F G E
Sbjct: 283 ---VPEMEPIIYSNIEDSKNPKVLPPNGVNTTEDAISYLEKRFAA---GQAKEFRDKKIS 336
Query: 273 TVIRDYIFVHLNDN-NDKFNLLIF---MLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
++ + HL D+ +D+ I+ M + L L D+ D L N+ I L G L+
Sbjct: 337 QMLDHSLLPHLGDSPSDRIRKAIYLGRMARSLLELSLGIRKEDDKDHLANKRIKLAGDLM 396
Query: 329 TIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKT 388
+ + ++ ++K +EK +++ G I ++
Sbjct: 397 DELFRSAFQSVMK-----------------------DLKYQLEKTYNRKRGIKIRPAVRQ 433
Query: 389 GRL------ATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT----SV 438
L A TG + R G + +R++ L IS R + + L T
Sbjct: 434 DLLTQRVLHAMSTGNWIGGRTGVSQLLDRVSNLSTISHLRRI-----ISPLTRTQPHFEA 488
Query: 439 RKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIG 498
R L P WG +CP TP+G+ CGL+ + V D S++ +L G
Sbjct: 489 RDLHPTQWGRICPNETPEGQNCGLVKNAALLINVTQGIDP-----------DSVMEILKG 537
Query: 499 VGMIPSLPKLVKSGPPAVLSVLLDGRVVG 527
+ + L + K G V L+G +G
Sbjct: 538 MDVREVLEESPKKG-----RVYLNGDFIG 561
>sp|Q9LK40|RPD2A_ARATH DNA-directed RNA polymerase D subunit 2a OS=Arabidopsis thaliana
GN=NRPD2a PE=1 SV=1
Length = 1172
Score = 293 bits (749), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 293/1109 (26%), Positives = 490/1109 (44%), Gaps = 138/1109 (12%)
Query: 53 VEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAA-EMGGYFILNG 111
VE + LD V ++ G PVM+K+ C + ++ K K + A + GGYF++ G
Sbjct: 159 VEKKILD----VKKQDILIGSIPVMVKSILC--KTSEKGKENCKKGDCAFDQGGYFVIKG 212
Query: 112 LERVF--------RSVILPKQNYPMSMVRSSFRDR---REGYTDKAVVIRCVRKDQSSVT 160
E+VF + + + + +S + R+R R +KA + R+++
Sbjct: 213 AEKVFIAQEQMCTKRLWISNSPWTVSFRSENKRNRFIVRLSENEKAEDYK--RREK---V 267
Query: 161 LKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAV 220
L +Y+L +PV ++ AL ++D E + + + + ++
Sbjct: 268 LTVYFLSTE--------------IPVWLLFFALGVSSDKEAMDLIA------FDGDDASI 307
Query: 221 GSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETV---IRD 277
+ L++ I +A+ ++ +C G + ++ + + AE+V +
Sbjct: 308 TNSLIAS---IHVAD----AVCEAFRC----GNNALTYVEQQIKSTKFPPAESVDECLHL 356
Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
Y+F L K L +M++ L + +N DS +N+ I L G L+ ++ L
Sbjct: 357 YLFPGLQSLKKKARFLGYMVKCLLNSYAGKRKCENRDSFRNKRIELAGELLEREIRVHLA 416
Query: 338 DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
RK + +Q + +G ++K + + I + TG +
Sbjct: 417 HARRKMTRAMQKHLSGDG---------DLKPIEHYLDASVITNGLSRAFSTGAW-SHPFR 466
Query: 398 DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDG 457
+++ +G R N L+ + R + + G + R P WG +C + TPDG
Sbjct: 467 KMERVSGVVANLGRANPLQTLIDLRRTRQQVLYTG-KVGDARYPHPSHWGRVCFLSTPDG 525
Query: 458 EPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVL 517
E CGL+ +M+ V++ + S++ L GM +L+ +
Sbjct: 526 ENCGLVKNMSLLGLVST------------QSLESVVEKLFACGM----EELMDDTCTPLF 569
Query: 518 ---SVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYL 574
VLL+G VG+ SE VA L+ + S +P ++E+ + +
Sbjct: 570 GKHKVLLNGDWVGLCADSE--SFVAELKSRR--RQSELPREMEI-----KRDKDDNEVRI 620
Query: 575 FTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPA------- 627
FT + +RP+ + + Q PF+ + G + A
Sbjct: 621 FTDAGRLLRPLLVVENLQKLKQEKPSQYPFDHLLDHGILELIGIEEEEDCNTAWGIKQLL 680
Query: 628 ------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQM-AKQTMGFSVQALKFRADQ 680
TH E+ + +L V + P+++H+ R +YQ Q +Q +GFS R D
Sbjct: 681 KEPKIYTHCELDLSFLLGVSCAVVPFANHDHGRRVLYQSQKHCQQAIGFSSTNPNIRCDT 740
Query: 681 KLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMC 740
L PQ P+ +T + G NAIVAV + GY+ ED++++NK+S++RGM
Sbjct: 741 LSQQLFYPQKPLFKTLASECLKKEVLFNGQNAIVAVNVHLGYNQEDSIVMNKASLERGMF 800
Query: 741 HGQIYQTETIDL-SDDGNKVDRGQKLFRRNKDAKSLHSV--IDSDGLPYVGQMIHPGEPY 797
+ ++ ++ + D K + +L + K + V ++ DG P++G + G+
Sbjct: 801 RSEQIRSYKAEVDAKDSEKRKKMDELVQFGKTHSKIGKVDSLEDDGFPFIGANMSTGD-- 858
Query: 798 CSIYDKTTNSWRTNS--RKGSESVFVDYVAVDMKNS-KNLPQKANIRFRHTRNPIIGDKF 854
+ + T S +S K +E V V + + KN A + R R+P +GDKF
Sbjct: 859 -IVIGRCTESGADHSIKLKHTERGIVQKVVLSSNDEGKNF---AAVSLRQVRSPCLGDKF 914
Query: 855 SSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHG 914
SS HGQKGV L + PF+ + G+ PD++INPHAFPSR T LLE+ +KG +
Sbjct: 915 SSMHGQKGVLGYLEEQQNFPFT-IQGIVPDIVINPHAFPSRQTPGQLLEAALSKG--IAC 971
Query: 915 KFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCE 974
A K T T S V E+ E L GF+ G E +Y+G G +
Sbjct: 972 PIQKEGSSAAYTKLTR--HATPFSTPGVTEITEQLHRAGFSRWGNERVYNGRSGEMMRSM 1029
Query: 975 IFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAA 1034
IF+GP +YQRL HM DK + R+TG + +TRQP+ RKR GGI+FGEMERD L+AHGA+
Sbjct: 1030 IFMGPTFYQRLVHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAS 1089
Query: 1035 YLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQT 1094
LH+RL T SD +C C + A I + R+I R P C C +
Sbjct: 1090 ANLHERLFTLSDSSQMHICRKCKTY--ANVIERTPSSGRKI------RGP---YCRVCVS 1138
Query: 1095 SKGMETVAMPYVFRYLAAELAAMNIKITL 1123
S + V +PY + L EL +M I +
Sbjct: 1139 SDHVVRVYVPYGAKLLCQELFSMGITLNF 1167
>sp|Q7T6X7|RPO2_MIMIV DNA-directed RNA polymerase subunit 2 OS=Acanthamoeba polyphaga
mimivirus GN=RPO2 PE=1 SV=2
Length = 1196
Score = 290 bits (743), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 320/1213 (26%), Positives = 509/1213 (41%), Gaps = 243/1213 (20%)
Query: 28 DEGLSEMFDHCRQAKISYTGKLMADVEFQYLDA-------------GSPVVRERFNFGQF 74
+E L D R+ +ISY+ K A V Q+ D GSP + +
Sbjct: 91 EENLLYPLDAIRK-QISYSAKYTATVT-QWQDIVDIDTKKTETRIIGSP--EKDVPIAKI 146
Query: 75 PVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSV--ILPK--------- 123
P+M+ ++ C+L ++ K + GGYFI+NG E+V SV ++P+
Sbjct: 147 PIMVLSKYCNLTLRPD---IAGKHCKYDAGGYFIVNGSEKVVLSVESMIPRKPVVFTQRD 203
Query: 124 QNYPMSMVR------SSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWL 177
QN + VR S F + +T K K +S+ L + + S+
Sbjct: 204 QNSLLYYVRVQSIPASQFVGNPQLFTVKM-------KRDNSIILSIPHFKEVSIFTFIRA 256
Query: 178 QGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVS--ERVKIILAE 235
G E IV L + ++ N L+ C + + +P V+ E ++I+ +
Sbjct: 257 LGIE--TDEDIVDSILDVKKEKDLLNLLSICMN--------SSNTPSVTKEEALEIMANQ 306
Query: 236 VQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLN--------DNN 287
++ T P + Q Y + ++ ++ H+ D
Sbjct: 307 IKSTKTFTDTN----------PEVKAEQRRRYL---DKIMTQFVLPHITSGTGDPEIDKI 353
Query: 288 DKFNLLIFMLQKLFSL-------VDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWL 340
K + + +M+ KL V+ D+ DS+ N+ I L G L+ K+ + L
Sbjct: 354 YKAHYICYMIHKLLKCYLRGAREVEEYRGCDDRDSMVNKRIDLTGRLLGGLFKQFYDKML 413
Query: 341 RKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQ 400
K+ + K D NI ++ N +Q + L TG +Q+
Sbjct: 414 NDCNKIFR------TKNIDDKKPPNIIPHIKPNSIEQ---GLRQALSTGNFGSQS----- 459
Query: 401 QRAGYTVQAERLNFLRFISFFRAVHRGASFAG-LRTTSVRKLLPESWGFLCPVHTPDGEP 459
R G + R+N L +S+ R V A ++ TS R L +G +CP+ +P+G+P
Sbjct: 460 -RKGLSQMLNRMNHLHSLSYMRRVITPTVDASTMKMTSPRHLHNTQYGSMCPLESPEGKP 518
Query: 460 -CGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLS 518
GL+ +M + +S+ I + S L +G I +L K +
Sbjct: 519 KTGLVKNMAMMEGITINMNSQIPIIE------SYL-----IGKITTLESANKKRLHQYVK 567
Query: 519 VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVG-YVPLSLGGAYPGLYLFTS 577
V L+G +GV + I K+ LR ++ E+ V L L +++T
Sbjct: 568 VFLNGNWLGV--TRNIIKIHNDLRAMRFRG--------ELSRMVGLVLNYKTAEFHIYTD 617
Query: 578 PPKFVRPVRNIS------------------------------LPSEESQNIELIGPFEQV 607
+ +RP ++ + EE QNI ++ F Q
Sbjct: 618 GGRLIRPYLTVTDNKLNFKPEMLDEVNSWEEFLAKFPEVIEYVDKEEEQNI-MLAVFPQY 676
Query: 608 FME---------IRCPDGGDG-GRRNAFPA------THEEIHPTGMLSVVANLTPYSDHN 651
+ I D + R N + TH EIHP +L ++++ P+ DHN
Sbjct: 677 IQDANRIMSKKPINSRDQLNKINRTNRYDDNVYVRYTHCEIHPCMILGLISSNIPFPDHN 736
Query: 652 QSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTN 711
QSPR ++Q A+Q MG + + R D Y L PQ P+V + G +P G N
Sbjct: 737 QSPRGIFQYNQARQAMGLYISDYRERTDIS-YILYHPQIPLVTSRASKYTGTHIFPAGEN 795
Query: 712 AIVAVLAYTGY-DMEDAMILNKSSVDRGMCHGQIYQT-------------ETIDLSDDGN 757
+IVA+ +YTG + ED++++N S++ +G Q + +I + D N
Sbjct: 796 SIVAIASYTGLMNQEDSLVINDSAIQKGYMRAQALKKYMEIIKKNPASSQTSIFMKPDRN 855
Query: 758 KVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYD-KTTNSWRTNSRKGS 816
KVD +DA + + +G V +I G+ + + K T K +
Sbjct: 856 KVDNL-------RDAN--YDKLSEEGYAKVETVIRDGDVVIGVVNPKPTAREDEKQYKDA 906
Query: 817 ESVF-------VDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWP 869
S++ VD V ++ N K +R R R P +GDKFSSR GQKG
Sbjct: 907 SSIYKSLIPGAVDKVITEVNNDGYPIIK--MRIRSERIPNVGDKFSSRAGQKGTIGYKAH 964
Query: 870 DIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKT 929
DM FS +G+ PD+IINP+ P RMTI L+E + K ++ G + DATPF
Sbjct: 965 RADMLFSK-SGLIPDIIINPNCMPKRMTIGQLIECLLGKLCAVKGVYGDATPF------- 1016
Query: 930 NGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMV 989
T D ++ + + L G+ G E +Y+G+ G +L +IFIGP YYQRL+ MV
Sbjct: 1017 ---TSVD-----LNAINDELVAAGYEEWGNETMYNGMNGKKLPVKIFIGPTYYQRLKQMV 1068
Query: 990 SDKFQVRSTGTMDQITRQPIKGRKRGGGIRFG-EMERDSLLAHGAAYLLHDRLHTCSDYH 1048
DK R+ G +TRQ +GR R GG+R G EMERD+L AHG A L ++ SD +
Sbjct: 1069 GDKAHSRARGPTQLLTRQAPEGRSRDGGLRIGFEMERDALCAHGVAQFLKEKTVDNSDIY 1128
Query: 1049 VADVCSLCGSVLTATFIH--PQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYV 1106
VC CG F H P+K K TC C+ + + + +PY
Sbjct: 1129 TCHVCDSCGQ-----FAHKVPEK---------------KYYTCTGCRNTTSISKIVIPYA 1168
Query: 1107 FRYLAAELAAMNI 1119
F+ L ELA++NI
Sbjct: 1169 FKLLLQELASINI 1181
>sp|Q91F97|RPB2_IIV6 Probable DNA-directed RNA polymerase II subunit RPB2 homolog
OS=Invertebrate iridescent virus 6 GN=IIV6-428L PE=3 SV=1
Length = 1193
Score = 266 bits (679), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 226/814 (27%), Positives = 374/814 (45%), Gaps = 108/814 (13%)
Query: 361 FNLANIKKVMEKNPSKQIGTSIETMLKTG-RLATQTGLDLQQRAGYT------VQAERLN 413
F +NI ++ ++N + S + TG + TG Q+ Y + +++
Sbjct: 442 FIKSNINQLEKRNRVEMDVISKNAFITTGLHFSFSTGNWGVQKNNYIRTGVAQIPQNKVS 501
Query: 414 FLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVA 473
F F S+ R G + T +R++ P S F CP TP+G+ G+ + + V
Sbjct: 502 FGAFFSYLRRFVIPMGKEG-KNTKIRQIHPSSIFFACPSETPEGQFVGITLNFSMLAEV- 559
Query: 474 SYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVL-LDGRVVGVIPSS 532
S S I++ + + + + + + L K LS++ ++G + G+ +S
Sbjct: 560 SIRTSSVVIKEIIEASHQAFKHVHEISLEENKQFLSK------LSIIFVNGGICGL--TS 611
Query: 533 EIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPS 592
+ +++++ +R LK+ + D+ ++P +++ + +F+RPV N L S
Sbjct: 612 KPQQLLSDVRDLKLKHC--LKYDVSAVFIP-----ELKEVHISSDAGRFIRPVLN--LQS 662
Query: 593 EESQNIELIGPFEQVFMEIRCPDGGDGGRRNAF-----------------PATHE--EIH 633
++ + F+ C + G ++A+ P ++ EIH
Sbjct: 663 IKTNGNVMWNSFQN------CLENGHVVYKDAYEIEQSQIAINLQDLSRYPTVYDSMEIH 716
Query: 634 PTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIV 693
+ ML V+A P+++H QSPR YQ MAKQ +G ++ + ++D + Q P+V
Sbjct: 717 ASCMLGVMAAQIPFAEHTQSPRLCYQSSMAKQAIG-NIPSHHVKSDNTTRVMDYVQRPLV 775
Query: 694 RTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLS 753
T +++P G NA+VAV YTG++ ED++ILNK+S+DRGM H Y+T ++
Sbjct: 776 TTQIAEMNRFNDFPNGLNAMVAVAIYTGFNQEDSIILNKASIDRGMFHVVTYKTIIVEER 835
Query: 754 DDG--NKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQM----------IHPGEPYCSIY 801
G K+ RR + L D+ PY G + + G+ I
Sbjct: 836 KIGVNEKICMPVASVRRMNNYSLLE---DNPESPYFGVVKVKSFVKRNDVLVGKVITKIS 892
Query: 802 DKTTNSWRTNSR--KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHG 859
T +S SE VD + ++ SK I + P IGDKF S
Sbjct: 893 KDGTRQETDHSTIVSISEEGKVDRI---IRTSKKGILMFKIVIAQQKRPEIGDKFCSAMA 949
Query: 860 QKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGK-FMD 918
QKG + ++DMPF G PD+IINPH PSRMTI ++ S+ K + F D
Sbjct: 950 QKGTVGMILEEVDMPFME-DGSIPDMIINPHCLPSRMTINQIMASIMGKTCCAKNETFGD 1008
Query: 919 ATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIG 978
A+PF ++++ + D+ +L EL E CG+NY+G E + G G +L EIF G
Sbjct: 1009 ASPF----QESSLEKPQDKIHALCKELEE----CGYNYNGTETMMCGWNGKKLRAEIFFG 1060
Query: 979 PVYYQRLRHMVSDKFQVRSTGTMDQ--ITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYL 1036
PVYY RL HMVSDK R++ + ITRQP+ GR GG+R GEME+D +L HG +
Sbjct: 1061 PVYYHRLTHMVSDKIFSRASTNQKRHAITRQPLNGRANEGGLRIGEMEKDCMLVHGISKF 1120
Query: 1037 LHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSK 1096
LH+++ SD + ++C C S + ++ G C C
Sbjct: 1121 LHEKMFDQSDKFIINLCVPCKSYF---------KVVKTQNGF---------FCSGCN--- 1159
Query: 1097 GMETVAM--PYVFRYLAAELAAMNIKITLQLGDG 1128
G++ V P+ + EL AM K+ ++ +
Sbjct: 1160 GIDIVKFNCPFAAKLFFQELTAMGQKLEFKVKNA 1193
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 39 RQAKISYTGKLMADV-EFQYLDAGSPVVRE--RFNFGQFPVMLKTRRCHLQGADSQKLVS 95
RQ I+Y + DV E+ D +V + R + P+ML++ C+L Q+ +
Sbjct: 123 RQKMITYDSFVFVDVLEYVLRDEEEILVNKHLRVQIAKIPIMLRSSTCNLYNCTPQERIE 182
Query: 96 LKEEAAEMGGYFILNGLERVF 116
L E + GGYFI+NG ERV
Sbjct: 183 LGEGIEDPGGYFIINGNERVL 203
>sp|Q6GZR3|RPB2_FRG3G Putative DNA-directed RNA polymerase II subunit RPB2 homolog OS=Frog
virus 3 (isolate Goorha) GN=FV3-062L PE=3 SV=1
Length = 1221
Score = 263 bits (673), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 327/1266 (25%), Positives = 496/1266 (39%), Gaps = 280/1266 (22%)
Query: 6 SADFEPLRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQY-------- 57
SA+ P VRHHIESFD ML M R+ +S G + +Y
Sbjct: 89 SANMHP-SNFVRHHIESFDDMLWNEFPAMV--AREKPVSVKGYRVKFGTVRYEPPCPDGK 145
Query: 58 ------------LDA----------------GSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
DA G V R + PVM+ + C +
Sbjct: 146 PWEKLTPAMARRTDATYHSAAVCDLTVTDPKGLETVYPRLELCKIPVMVGSAVCWTRTEG 205
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYP---------MSMVRSSFRDRRE 140
S E ++ GGYFI+ G ERV I P + P + RS R+ R+
Sbjct: 206 SPLP---GECPSDPGGYFIIKGKERVVVPHIRPAYDQPCVYKNGDGWLCEFRSVNRETRQ 262
Query: 141 GYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLE 200
V+++ + + L Y+ K+Y+ PVG+V KAL T
Sbjct: 263 -----TVLVQAKTDCRRKLEFSLPYI-------------KQYV-PVGLVFKALGKTAREA 303
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
+ C +GS L E + V S+ L QH PV D
Sbjct: 304 V---AMC-----------GLGSFLGDE---VSCRTVHHQSMAALLM-EQHASAPEDPVAD 345
Query: 261 -----------------GLQSESYYAVAET----------------VIRDYIFVHLNDNN 287
G + Y A V+ IF+H
Sbjct: 346 LAKHVPDGRSVYSKQAEGAKQAKYADRASVEEDRNAKGSKEDYVRHVLAGEIFLH---GG 402
Query: 288 DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLI 347
D L +M++++ + D L N+ + G LI L L K+ +
Sbjct: 403 DAAEHLGWMVKRMADAASGIGTCTDRDDLANKRVDATGPLIAFLLDGLL-------KQYV 455
Query: 348 QDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQT-GLDLQQRAGYT 406
+ +++ G + + ++ M + S+ TG + G R G +
Sbjct: 456 KLFVKSAGCQKNLCPYTVLQNSM------VMTNSLHMCFATGNWTVKRLGPPSYVRVGVS 509
Query: 407 VQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHM 466
N+ +S R + SF G + +R+L +GFLCP TP+GE G++ +M
Sbjct: 510 QVLSNNNYGARVSHLRRIMHAVSFRG-KNIRMRQLHSSHYGFLCPYETPEGEKVGIVLNM 568
Query: 467 TSTCRVASYYDSRGNIRDFSKMRTSILRVLIGV-GMIPSLP-KLVKSGPPAVLSVLLDGR 524
A + ++ ++ + +R+ G+ G P +L SG SV +DG
Sbjct: 569 AEG---AGF-----SLETPREVVLATVRLGKGLPGFFEGAPARLAWSGAAGSASVDVDGV 620
Query: 525 VVGVIPSSEIEKVVAHLR--RLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFV 582
+ GV V +R RL + SV+ +E L G + L P+ +
Sbjct: 621 LCGVTGDP-----VGFVREARLCLPGVSVVWKKVEREIHLLGCQGRFVRRVL---DPEGI 672
Query: 583 RPVRNISLPSEESQNIEL-----------IGPFEQVFM---EIRCPDGGDGGRRNAFPAT 628
R S P+ E ++IE+ + V++ E+ GDG + PA+
Sbjct: 673 RGSGYDSPPAPEERDIEMDPAPSSSPSDSLPCPPGVYVCAQELSVCSLGDGEYADP-PAS 731
Query: 629 HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTP 688
EI M SV+ P+ DH QSPRN YQ M KQ +GF R D L+ L P
Sbjct: 732 --EILTDAMSSVI----PFYDHTQSPRNAYQSNMGKQAIGFPAVNCSDRYDATLHRLDYP 785
Query: 689 QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
Q +V + + + G DE G +VA++ G++ ED+++LN SS+DRG+ Y+T
Sbjct: 786 QKSLVDSRSVKRLGFDEMAHGALPVVAIMTAGGFNQEDSVVLNASSLDRGLFSCVTYRTV 845
Query: 749 TID----------------------------LSDDG-----------NKVDRGQKLFRR- 768
+ L DDG +V+ +K +R
Sbjct: 846 SCADKRRTKYDSEVVCLPDWGLRNREWDYDLLGDDGVIDPSCAGALARRVEGKRKAAKRP 905
Query: 769 --NKDAKSLHSVIDSDGLP----YVGQMIHPGEPYCSIYDKTTNSWRTN---SRKGSESV 819
+ + D+ +P VG++ H P N R + + K SE
Sbjct: 906 AGQRTGGGPAGLCDALWIPAGTVLVGKVSHSLGP-------GGNPMRRDVSLTVKQSEEG 958
Query: 820 FVDYVAVDM-KNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGV 878
++D V VD+ + K L +R R R+P +GDKF+S QKG C + DMPF
Sbjct: 959 YLDRVTVDVDSDGKKL---VKVRLRTPRHPEMGDKFASFTAQKGTCGAVLTQEDMPFDK- 1014
Query: 879 TGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDES 938
G+ PDLIINPHAFPSRMT+ LL+ GK DAT F E
Sbjct: 1015 DGVVPDLIINPHAFPSRMTVNYLLQMCFGTAACKLGKTYDATAF--------------ER 1060
Query: 939 KSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRST 998
+ +V ++ E + G + VL+SG G L +IF+ P YQRL+HMVS K R+
Sbjct: 1061 EDVVRDIAEAAKEAGIDCWD-SVLHSGSTGRRLPTKIFMAPCPYQRLKHMVSGKMHSRTH 1119
Query: 999 GTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGS 1058
G D +TRQP+ GR R GGI+ GEME+ ++HGA+ L + ++ SD + VC CG
Sbjct: 1120 GPTDALTRQPVAGRSREGGIKIGEMEQWCKISHGASESLKESVYDMSDKYEVPVCKECGR 1179
Query: 1059 VLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMN 1118
+ + F + C C + M V +PY + L EL ++
Sbjct: 1180 I-SDHFEY----------------------CRMCDATD-MSLVKLPYTTKILFQELRSIG 1215
Query: 1119 IKITLQ 1124
I I +
Sbjct: 1216 ISIAFK 1221
>sp|P0C8K5|RPB2_ASFWA DNA-directed RNA polymerase subunit 2 OS=African swine fever virus
(isolate Warthog/Namibia/Wart80/1980) GN=War-063 PE=3
SV=1
Length = 1242
Score = 209 bits (531), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 139/448 (31%), Positives = 215/448 (47%), Gaps = 31/448 (6%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH ++ P +L + A ++PY++ Q R Y+ +QT G+ + +R D +
Sbjct: 770 THVDV-PQAILGLAALVSPYANCTQPARVTYETNQGRQTGGWYCFSWPYRVDMNRFFQFY 828
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
+ P+V+T + Y I P G N IVA + Y GY+ ED++I+++S +DRG G Y+
Sbjct: 829 NEMPLVKTIAHN-YVI---PNGLNTIVAYMIYGGYNQEDSVIVSQSFIDRGGFAGTFYRE 884
Query: 748 ETIDLSDDGNKVDRGQKLFRRN-KDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN 806
E ++L D + L +N K + ++D G VG ++ G+ K
Sbjct: 885 EKVELESDIESFGKPDPLITKNLKPGANYEKLVD--GFVPVGTVVKKGDIIIGKVAKIRG 942
Query: 807 SWRTNSRKGSESVFVDYVAVDMKNSKNLPQKAN------IRFRHTRNPIIGDKFSSRHGQ 860
++ SV + + ++ P N +R R+ RN IGDK SSR G
Sbjct: 943 EKDELNKYIDRSVMYGFDEPAVVDAVMRPHGPNDEIFGLMRLRYERNLNIGDKMSSRSGN 1002
Query: 861 KGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDAT 920
KG+ + P DMPF+ G++PDLI+NPH+ PSRMT ++E+ +L G D T
Sbjct: 1003 KGIAALALPTSDMPFTE-DGLQPDLIVNPHSHPSRMTNGQMIETTVGLANALQGVVTDGT 1061
Query: 921 PFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPV 980
F V L E L G ++G + +++G G IFIGP
Sbjct: 1062 AFL---------------PINVQLLSERLAQEGLRFNGCQKMFNGQTGEYFDAAIFIGPT 1106
Query: 981 YYQRLRHMV-SDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHD 1039
Y+QRL+ V D++ V S G D +T QP+ G++ GG+R GEME L A GA + +
Sbjct: 1107 YHQRLQKFVLDDRYAVASYGPTDALTGQPLDGKRSHGGLRLGEMEHWVLTAQGAMQTIIE 1166
Query: 1040 RLHTCSDYHVADVCSLCGSVLTATFIHP 1067
+ H SD ++ VC CG HP
Sbjct: 1167 KSHDDSDGCISYVCRNCGEPAIYNASHP 1194
Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 92/478 (19%), Positives = 172/478 (35%), Gaps = 52/478 (10%)
Query: 36 DHCRQAKISYTG--KLMADVEF--QYLDAGSPVVRER---FNFGQFPVMLKTRRCHLQGA 88
+ R +SY+G L A+V Y + V R F FP+M + RCH
Sbjct: 115 NKARLCGLSYSGPVNLAAEVILTAHYSNGRQEVKRASIPPFQVSTFPIMRGSNRCHTHHL 174
Query: 89 DSQKLVSLKEEAAEMGGYFILNGLERV------FRSVILPKQNYPM-----SMVRSSFRD 137
+ E+ E GGYFI G E V R L + M ++R F
Sbjct: 175 SKTAKKEIGEDPNEPGGYFIARGGEWVVDLLENIRFNTLHIHYHTMQQGNNEIIRGEFIS 234
Query: 138 RREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLP--VGIVLKALVD 195
+ G + + I ++T+++ +R+ ++L + + + I+ + + D
Sbjct: 235 QPGGAFENSSQIIIRYMTTGAITIEINSTKFSKLRIPWYLIFRMFGMTGDDSIIEQVVFD 294
Query: 196 TNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSE--RVKIILAEVQDLS--------LTTRL 245
+ N EK + P+ E R KII + +S +
Sbjct: 295 LESNSLVNTFMIEILEKSIHVLDPIFQPVQHELNREKIIQFLSEKVSKFVSNPSAYKSDE 354
Query: 246 QCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVD 305
+Q++ E ++D + A+T +R F+ L + ++ ++ +F D
Sbjct: 355 NAVQYLNERQLTILDKILLPHMGQTADTRVRKLRFLGL-----LIHKILLVIMNVFPPTD 409
Query: 306 HTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLAN 365
S + + L I+ + + K+L++ F+ N
Sbjct: 410 RDSYRTK--RVHGSGVSLAKAFKAIFNTSVIAPIINGFKELLKQ------TAFEELTQRN 461
Query: 366 IKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGY----TVQAERLNFLRFISFF 421
I + SK + + ++ ++ + ++QR T ER N L IS
Sbjct: 462 IIEAFSAALSKNTASDLNRSMEQSIISGNKTIMVRQRPIVNRVSTQSLERKNLLNTISAL 521
Query: 422 RAVH----RGASFAGLRTTSVRKLLPESWGFLCPVHTPD-GEPCGLLNHMTSTCRVAS 474
R V+ AS R +R++ G++C + D GE G+ + T V +
Sbjct: 522 RTVNTHNTTNASKQTERADMMRRVHASYPGYICVAQSADTGEKVGMSKQLAITANVCT 579
>sp|P0C8K4|RPB2_ASFP4 DNA-directed RNA polymerase subunit 2 OS=African swine fever virus
(isolate Tick/South Africa/Pretoriuskop Pr4/1996)
GN=Pret-065 PE=3 SV=1
Length = 1242
Score = 209 bits (531), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 139/448 (31%), Positives = 215/448 (47%), Gaps = 31/448 (6%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH ++ P +L + A ++PY++ Q R Y+ +QT G+ + +R D +
Sbjct: 770 THVDV-PQAILGLAALVSPYANCTQPARVTYETNQGRQTGGWYCFSWPYRVDMNRFFQFY 828
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
+ P+V+T + Y I P G N IVA + Y GY+ ED++I+++S +DRG G Y+
Sbjct: 829 NEMPLVKTIAHN-YVI---PNGLNTIVAYMIYGGYNQEDSVIVSQSFIDRGGFAGTFYRE 884
Query: 748 ETIDLSDDGNKVDRGQKLFRRN-KDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN 806
E ++L D + L +N K + ++D G VG ++ G+ K
Sbjct: 885 EKVELESDIESFGKPDPLITKNLKPGANYEKLVD--GFVPVGTVVKKGDIIIGKVAKIRG 942
Query: 807 SWRTNSRKGSESVFVDYVAVDMKNSKNLPQKAN------IRFRHTRNPIIGDKFSSRHGQ 860
++ SV + + ++ P N +R R+ RN IGDK SSR G
Sbjct: 943 EKDELNKYIDRSVMYGFDEPAVVDAVMRPHGPNDEIFGLMRLRYERNLNIGDKMSSRSGN 1002
Query: 861 KGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDAT 920
KG+ + P DMPF+ G++PDLI+NPH+ PSRMT ++E+ +L G D T
Sbjct: 1003 KGIAALALPTSDMPFTE-DGLQPDLIVNPHSHPSRMTNGQMIETTVGLANALQGVVTDGT 1061
Query: 921 PFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPV 980
F V L E L G ++G + +++G G IFIGP
Sbjct: 1062 AFL---------------PINVQLLSERLAQEGLRFNGCQKMFNGQTGEYFDAAIFIGPT 1106
Query: 981 YYQRLRHMV-SDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHD 1039
Y+QRL+ V D++ V S G D +T QP+ G++ GG+R GEME L A GA + +
Sbjct: 1107 YHQRLQKFVLDDRYAVASYGPTDALTGQPLDGKRSHGGLRLGEMEHWVLTAQGAMQTIIE 1166
Query: 1040 RLHTCSDYHVADVCSLCGSVLTATFIHP 1067
+ H SD ++ VC CG HP
Sbjct: 1167 KSHDDSDGCISYVCRNCGEPAIYNASHP 1194
Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 92/478 (19%), Positives = 172/478 (35%), Gaps = 52/478 (10%)
Query: 36 DHCRQAKISYTG--KLMADVEF--QYLDAGSPVVRER---FNFGQFPVMLKTRRCHLQGA 88
+ R +SY+G L A+V Y + V R F FP+M + RCH
Sbjct: 115 NKARLCGLSYSGPVNLAAEVILTAHYSNGRQEVKRASIPPFQVSTFPIMRGSNRCHTHHL 174
Query: 89 DSQKLVSLKEEAAEMGGYFILNGLERV------FRSVILPKQNYPM-----SMVRSSFRD 137
+ E+ E GGYFI G E V R L + M ++R F
Sbjct: 175 SKTAKKEIGEDPNEPGGYFIARGGEWVVDLLENIRFNTLHIHYHTMQQGNNEIIRGEFIS 234
Query: 138 RREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLP--VGIVLKALVD 195
+ G + + I ++T+++ +R+ ++L + + + I+ + + D
Sbjct: 235 QPGGAFENSSQIIIRYMTTGAITIEINSTKFSKLRIPWYLIFRMFGMTGDDSIIEQVVFD 294
Query: 196 TNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSE--RVKIILAEVQDLS--------LTTRL 245
+ N EK + P+ E R KII + +S +
Sbjct: 295 LESNSLVNTFMIEILEKSIHVLDPIFQPVQHELNREKIIQFLSEKVSKFVSNPSAYKSDE 354
Query: 246 QCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVD 305
+Q++ E ++D + A+T +R F+ L + ++ ++ +F D
Sbjct: 355 NAVQYLNERQLTILDKILLPHMGQTADTRVRKLRFLGL-----LIHKILLVIMNVFPPTD 409
Query: 306 HTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLAN 365
S + + L I+ + + K+L++ F+ N
Sbjct: 410 RDSYRTK--RVHGSGVSLAKAFKAIFNTSVIAPIINGFKELLKQ------TAFEELTQRN 461
Query: 366 IKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGY----TVQAERLNFLRFISFF 421
I + SK + + ++ ++ + ++QR T ER N L IS
Sbjct: 462 IIEAFSAALSKNTASDLNRSMEQSIISGNKTIMVRQRPIVNRVSTQSLERKNLLNTISAL 521
Query: 422 RAVH----RGASFAGLRTTSVRKLLPESWGFLCPVHTPD-GEPCGLLNHMTSTCRVAS 474
R V+ AS R +R++ G++C + D GE G+ + T V +
Sbjct: 522 RTVNTHNTTNASKQTERADMMRRVHASYPGYICVAQSADTGEKVGMSKQLAITANVCT 579
>sp|P0C8K3|RPB2_ASFM2 DNA-directed RNA polymerase subunit 2 OS=African swine fever virus
(isolate Tick/Malawi/Lil 20-1/1983) GN=Mal-061 PE=3 SV=1
Length = 1242
Score = 208 bits (529), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 138/448 (30%), Positives = 215/448 (47%), Gaps = 31/448 (6%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH ++ P +L + A ++PY++ Q R Y+ +QT G+ + +R D +
Sbjct: 770 THVDV-PQAILGLAALVSPYANCTQPARVTYETNQGRQTGGWYCFSWPYRVDMNRFFQFY 828
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
+ P+V+T + Y I P G N IVA + Y GY+ ED++I+++S +DRG G Y+
Sbjct: 829 NEMPLVKTIAHN-YVI---PNGLNTIVAYMIYGGYNQEDSVIVSQSFIDRGGFAGTFYRE 884
Query: 748 ETIDLSDDGNKVDRGQKLFRRN-KDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN 806
E ++L D + L +N K + ++D G VG ++ G+ K
Sbjct: 885 EKVELESDIESFGKPDPLITKNLKPGANYEKLVD--GFVPVGTVVKKGDIIIGKVAKIRG 942
Query: 807 SWRTNSRKGSESVFVDYVAVDMKNSKNLPQKAN------IRFRHTRNPIIGDKFSSRHGQ 860
++ SV + + ++ P N +R R+ RN IGDK SSR G
Sbjct: 943 EKDELNKYIDRSVMYGFDEPAVVDAVMRPHGPNDEIFGLMRLRYERNLNIGDKMSSRSGN 1002
Query: 861 KGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDAT 920
KG+ + P DMPF+ G++PDLI+NPH+ PSRMT ++E+ +L G D T
Sbjct: 1003 KGIAALALPTSDMPFTE-DGLQPDLIVNPHSHPSRMTNGQMIETTVGLANALQGVVTDGT 1061
Query: 921 PFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPV 980
F V L E L G ++G + +++G G IFIGP
Sbjct: 1062 AFL---------------PINVQLLSERLAQEGLRFNGCQKMFNGQTGEYFDAAIFIGPT 1106
Query: 981 YYQRLRHMV-SDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHD 1039
Y+QRL+ V D++ V S G D +T QP+ G++ GG+R GEME L A GA + +
Sbjct: 1107 YHQRLQKFVLDDRYAVASYGPTDALTGQPLDGKRSHGGLRLGEMEHWVLTAQGAMQTIIE 1166
Query: 1040 RLHTCSDYHVADVCSLCGSVLTATFIHP 1067
+ H SD ++ +C CG HP
Sbjct: 1167 KSHDDSDGCISYICRNCGEPAIYNASHP 1194
Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Query: 36 DHCRQAKISYTG--KLMADVEF--QYLDAGSPVVRER---FNFGQFPVMLKTRRCHLQGA 88
+ R +SY+G L A+V Y + V R F FP+M + RCH
Sbjct: 115 NKARLCGLSYSGPVNLAAEVILTAHYSNGRQEVKRASIPPFQVSTFPIMRGSNRCHTYHL 174
Query: 89 DSQKLVSLKEEAAEMGGYFILNGLERV 115
+ E+ E GGYFI G E V
Sbjct: 175 SKTAKKEIGEDPNEPGGYFIARGGEWV 201
>sp|P0C8K2|RPB2_ASFK5 DNA-directed RNA polymerase subunit 2 OS=African swine fever virus
(isolate Pig/Kenya/KEN-50/1950) GN=Ken-065 PE=3 SV=1
Length = 1242
Score = 208 bits (529), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 138/448 (30%), Positives = 215/448 (47%), Gaps = 31/448 (6%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH ++ P +L + A ++PY++ Q R Y+ +QT G+ + +R D +
Sbjct: 770 THVDV-PQSILGLAALVSPYANCTQPARVTYETNQGRQTGGWYCFSWPYRVDMNRFFQFY 828
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
+ P+V+T + Y I P G N IVA + Y GY+ ED++I+++S +DRG G Y+
Sbjct: 829 NEMPLVKTIAHN-YVI---PNGLNTIVAYMIYGGYNQEDSVIVSQSFIDRGGFAGTFYRE 884
Query: 748 ETIDLSDDGNKVDRGQKLFRRN-KDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN 806
E ++L D + L +N K + ++D G VG ++ G+ K
Sbjct: 885 EKVELESDIESFGKPDPLITKNLKPGANYEKLVD--GFVPVGTVVKKGDIIIGKVAKIRG 942
Query: 807 SWRTNSRKGSESVFVDYVAVDMKNSKNLPQKAN------IRFRHTRNPIIGDKFSSRHGQ 860
++ SV + + ++ P N +R R+ RN IGDK SSR G
Sbjct: 943 EKDELNKYIDRSVMYGFDEPAVVDAVMRPHGPNDEIFGLMRLRYERNLNIGDKMSSRSGN 1002
Query: 861 KGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDAT 920
KG+ + P DMPF+ G++PDLI+NPH+ PSRMT ++E+ +L G D T
Sbjct: 1003 KGIAALALPTSDMPFTE-DGLQPDLIVNPHSHPSRMTNGQMIETTVGLANALQGVVTDGT 1061
Query: 921 PFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIGPV 980
F V L E L G ++G + +++G G IFIGP
Sbjct: 1062 AFL---------------PINVQLLSERLAQEGLRFNGCQKMFNGQTGEYFDAAIFIGPT 1106
Query: 981 YYQRLRHMV-SDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHD 1039
Y+QRL+ V D++ V S G D +T QP+ G++ GG+R GEME L A GA + +
Sbjct: 1107 YHQRLQKFVLDDRYAVASYGPTDALTGQPLDGKRSHGGLRLGEMEHWVLTAQGAMQTIIE 1166
Query: 1040 RLHTCSDYHVADVCSLCGSVLTATFIHP 1067
+ H SD ++ +C CG HP
Sbjct: 1167 KSHDDSDGCISYICRNCGEPAIYNASHP 1194
Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 7/87 (8%)
Query: 36 DHCRQAKISYTG--KLMADVEF--QYLDAGSPVVRER---FNFGQFPVMLKTRRCHLQGA 88
+ R + +SY+G KL A+V Y + V R F FP+M + RCH
Sbjct: 115 NKARLSGLSYSGPVKLAAEVILTAHYSNGRQEVKRASIPPFQVSTFPIMRGSNRCHTHDL 174
Query: 89 DSQKLVSLKEEAAEMGGYFILNGLERV 115
+ E+ E GGYFI G E V
Sbjct: 175 SKTAKKEIGEDPNEPGGYFIARGGEWV 201
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 425,648,724
Number of Sequences: 539616
Number of extensions: 18685515
Number of successful extensions: 46233
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 39927
Number of HSP's gapped (non-prelim): 4348
length of query: 1131
length of database: 191,569,459
effective HSP length: 128
effective length of query: 1003
effective length of database: 122,498,611
effective search space: 122866106833
effective search space used: 122866106833
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)