Query 001179
Match_columns 1131
No_of_seqs 209 out of 1894
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 15:06:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001179.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001179hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h0g_B DNA-directed RNA polyme 100.0 4E-272 2E-276 2540.7 40.0 1027 8-1128 23-1209(1210)
2 1twf_B DNA-directed RNA polyme 100.0 8E-267 3E-271 2522.5 77.4 1027 8-1129 36-1222(1224)
3 4ayb_B DNA-directed RNA polyme 100.0 4E-244 1E-248 2329.6 74.6 1013 8-1129 19-1122(1131)
4 2a6h_C DNA-directed RNA polyme 100.0 1E-214 4E-219 2000.2 46.1 890 7-1128 10-1106(1119)
5 3lu0_C DNA-directed RNA polyme 100.0 2E-197 8E-202 1819.0 34.4 913 9-1124 21-1340(1342)
6 3mlq_A DNA-directed RNA polyme 99.9 4.2E-23 1.4E-27 214.0 6.3 88 14-126 2-131 (188)
7 3qqc_A DNA-directed RNA polyme 99.1 2.4E-11 8.1E-16 141.9 5.7 64 1047-1128 2-65 (436)
8 3lti_A DNA-directed RNA polyme 98.8 4.7E-08 1.6E-12 107.5 14.3 163 138-311 21-296 (296)
9 3tbi_B DNA-directed RNA polyme 98.6 6.8E-08 2.3E-12 101.6 7.5 85 744-830 3-108 (228)
10 3mlq_A DNA-directed RNA polyme 91.1 0.22 7.4E-06 51.7 5.5 65 316-392 121-185 (188)
11 1gh9_A 8.3 kDa protein (gene M 39.5 7.6 0.00026 33.8 0.6 48 1048-1115 2-55 (71)
12 1yuz_A Nigerythrin; rubrythrin 28.4 24 0.00082 36.7 2.3 15 1046-1060 167-181 (202)
No 1
>3h0g_B DNA-directed RNA polymerase II subunit RPB2; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.4e-272 Score=2540.73 Aligned_cols=1027 Identities=29% Similarity=0.464 Sum_probs=912.7
Q ss_pred ccccchhhHHHHHHHHHHHHHHhHHHHH---------------------------------------------------H
Q 001179 8 DFEPLRELVRHHIESFDYMLDEGLSEMF---------------------------------------------------D 36 (1131)
Q Consensus 8 ~~~~~~~Lv~~hi~SFn~Fi~~gl~~ii---------------------------------------------------~ 36 (1131)
+|+..++||+|||||||+|+++||++|+ +
T Consensus 23 aff~~~gLV~qHIdSFN~FI~~~Lq~IV~~~~~I~~~~~~~~~~~~~~~~~~~~l~f~~i~v~kP~~~e~d~~~~~l~P~ 102 (1210)
T 3h0g_B 23 SFFEETSLARQQLFSFDEFVQNTMQEIVDDDSTLTLDQYAQHTGAQGDVTRRYEINFGQIYLSRPTMTEADGSTTTMFPQ 102 (1210)
T ss_dssp HHHHHTCTTCSSSSSSSSSTTTTHHHHSSTTCCCC-------------------CEEEEEECCCCCCBCTTSCBCCCCTT
T ss_pred HHhcccchHHHHHHHHHHHHHHhHHHHHhccCcEEecCccCcccccccCCceEEEEEEEEEEcCCceecCCCcccccCHH
Confidence 4567899999999999999999999876 8
Q ss_pred HHHHcCCeeeEEEEEEEEEEEecCC----------C-----ceEEEEEeecccceeeccCcccCCCCChHHHHhhccccc
Q 001179 37 HCRQAKISYTGKLMADVEFQYLDAG----------S-----PVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAA 101 (1131)
Q Consensus 37 ecR~r~~TYsa~l~v~v~~~~~~~~----------~-----~~~~~~v~iG~iPIMvkS~~C~L~~ls~~el~~~gE~~~ 101 (1131)
|||+|++||+|||+|+|+++++... . .....++.||+|||||||++|||++++++||+++||||+
T Consensus 103 EcRlR~lTYsapl~Vdi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IG~iPIMlrS~~C~L~g~s~~eL~~~gEcp~ 182 (1210)
T 3h0g_B 103 EARLRNLTYSSPLYVDMRKKVMVAADSNVPIGEEEWLVEEEDEEPSKVFIGKIPIMLRSTFCILNGVSDSELYDLNECPY 182 (1210)
T ss_dssp TTTTTCCCCEEEEEEEEEC---------------------CCSSCCCEEEEEEECCSSSTTSSSSSCCHHHHHHTTCCTT
T ss_pred HHHhcCCccceeEEEEEEEEEcCccccccccccccccccccccccceEEEecCCEEeCCCcccCCCCCHHHHHhcCCCCC
Confidence 9999999999999999999876211 0 112357999999999999999999999999999999999
Q ss_pred cCCcEEEEcCceeEEEEEEeccCCceEEEEeccccCCCcceeeEEEEEeeeecCCCce--EEEEEEEe------CCeEEE
Q 001179 102 EMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSV--TLKLYYLL------NGSVRL 173 (1131)
Q Consensus 102 D~GGYFIING~EKVIr~qi~~~~N~~~~~~r~s~~~r~~~~t~~~i~iRs~~~~~~s~--~~~l~~~~------~g~~~l 173 (1131)
||||||||||+||||++|+..++|+|+++ +++++.|+.|++.+||+++++++. ++.+++.. ++.+.+
T Consensus 183 D~GGYFIING~EKVII~qerla~N~~iv~-----~~~~~~~~~~~a~irS~~~~~~~~~s~~~v~~~~~~~~~~~~~i~~ 257 (1210)
T 3h0g_B 183 DQGGYFIINGSEKVIIAQERSAANIVQVF-----KKAAPSPIAYVAEIRSALERGSRLISSMQIKLMARNTENSGQTIRA 257 (1210)
T ss_dssp CCCCCBCGGGSCBCCCBCBCCCCSCCCCC-----CCCCSSSCCCCCCCCCCCCSSSCCCCCCCCCCCCCCTTSCSCCCCC
T ss_pred CCCCEEEEeCEEEEEEechhhccceEEEE-----eecCCCCceEEEEEEEEecCCccceeEEEEEEEeccccCCCceEEE
Confidence 99999999999999988888888999875 445667889999999999986533 33344443 567777
Q ss_pred EEEEecccccccHhhHHHhccCCCHHHHHHhhccccchhhhcccCCCCChhHHHHHHHHHHHHHhccccCHHHHHHHHhh
Q 001179 174 GFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGE 253 (1131)
Q Consensus 174 ~~~~~k~~~~IPi~ilLkALg~~sD~eI~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~~~~~i~t~~~AL~yIG~ 253 (1131)
+|++.+. +||+++||||||.+||+||++.|+. +.+++.+.+.+..++++.. .++||++||+|||+
T Consensus 258 ~~~~~~~--~IPi~ivlkALg~~sD~EI~~~I~~-----------~~~d~~~~~~l~~slee~~--~i~tq~~aL~yIG~ 322 (1210)
T 3h0g_B 258 TLPYIRS--DIPIVIVFRALGVVPDRDILEHICY-----------DPNDFQMLEMMKPCIEEAF--VIQDKDIALDYIGK 322 (1210)
T ss_dssp CCTTSCS--CCCSHHHHTTTTCCSTTHHHHHHCC-----------SSCCHHHHHTHHHHHHTTS--SCCSSHHHHHTTCC
T ss_pred EEecccc--CCcHHHHHHHcCCCCHHHHHHHHhC-----------CCCcHHHHHHHHHHHHHhh--hcCCHHHHHHHHHH
Confidence 8877664 6999999999999999999999982 1235556677777777653 58999999999999
Q ss_pred cccccccCCCCccHHHHHHHHHHhhhcccCCCc----hhhHHHHHHHHHHHHhhcCCCCCCCCcccccccEeccchhhHH
Q 001179 254 HFQPVIDGLQSESYYAVAETVIRDYIFVHLNDN----NDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329 (1131)
Q Consensus 254 ~~r~~~~~~~~~~~~e~g~~~L~~~ll~Hl~~~----~~K~~~L~~MvrkLl~l~~G~~~~DD~D~l~NkRv~l~G~Ll~ 329 (1131)
+|+.. ..++.+++++|+++|+++|||||+.. .+||+||++|+||||+++.|++.+||+|||+||||+|+|+||+
T Consensus 323 r~~~~--~~~~~~~~~~a~~iL~~~lLpHl~~~~~~~~~Ka~fL~~MvrkLl~~~~G~~~~Dd~D~~~nkrl~l~G~Ll~ 400 (1210)
T 3h0g_B 323 RGSTT--GVTREKRLRYAHDILQKELLPHITTMEGFETRKAFFLGYMIHRMLLCALERREPDDRDHFGKKRLDLAGPLLA 400 (1210)
T ss_dssp CSSSC--CCCHHHHHHHHHHHHTTTSSCSSCCSSSCCSSHHHHHHHHHHHHHHHHTTSSCCCCTTCSSSCCBCCHHHHHH
T ss_pred hcccc--CCCchhHHHHHHHHHHhhEEeCcCCCccchhHHHHHHHHHHHHHHHHhCCCCCCCCCccccCeEEecHHHHHH
Confidence 99853 13556789999999999999999964 4899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHhcCCCcchHHHHHHHhcccCcccccccccccccceEEEc
Q 001179 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQA 409 (1131)
Q Consensus 330 ~lf~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~It~~i~~~~sTGnw~~~~~~~~~q~~Gvsqvl 409 (1131)
.+||+.|+++++++++.+++.+.+ ++.+++. .+++ ++.||++|++|||||||+++.+ +++|++||||||
T Consensus 401 ~lfr~~~~~~~~~i~~~l~k~~~~-~~~~~~~------~~i~---~~~It~~l~~~laTGNW~~~kk-~~~~~sGvsqvl 469 (1210)
T 3h0g_B 401 SLFRMLFRKMTRDVYKYMQKCVET-NREFNLT------LAVK---SNIITNGLRYSLATGNWGDQKR-SMVNRVGVSQVL 469 (1210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT-CCSCCCT------TSSC---STTTSHHHHHHHSSSCSSTTSS-CCSCCCCSCCBC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-CCccCHH------Hhcc---hhhhHHHHHHHhhcCCcccccc-cccCcCCEEEEc
Confidence 999999999999999999998877 5444432 2342 3589999999999999998766 578999999999
Q ss_pred cccchHHHhhhccccccCCccccccccccccccCCcccccccCCCCCCccccccccccceEEEeeccCCCCcccccchhh
Q 001179 410 ERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMR 489 (1131)
Q Consensus 410 eRln~~~~lSh~Rrv~rg~~~~~~K~t~~R~Lhps~wGfICPveTPEG~~CGLvk~LA~~a~It~~~~~~~~~~~~~~~~ 489 (1131)
+|+||+|+|||||||+ +++++++|+++||+||||||||+||+|||||++||||||||++|+||++.+.+
T Consensus 470 ~R~n~~s~lShlRrv~-~p~~~~~K~~~~R~Lhpt~WG~iCP~eTPEG~~cGLvknLal~~~Isvg~~~~---------- 538 (1210)
T 3h0g_B 470 NRYTFASTLSHLRRTN-TPIGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYVSVGSPSA---------- 538 (1210)
T ss_dssp CCSSHHHHHHHTTBBC-CSCCSSCCSSSSSSCCGGGTTTCCCSCCCSSSSTTTSCBCCSSCCBCCCCCSS----------
T ss_pred ccCCHHHHHHHHHhcc-CchhhccccccccccChhhheeeccccCCCCCcccccccccceeeeECCCCcH----------
Confidence 9999999999999997 57899999999999999999999999999999999999999999999987776
Q ss_pred hHHHHHHHhcCceecCcccccCCCCCceEEEECCEEEeeecCchHHHHHHHHHHHHhhcCCCCCCCceEEEEeCCCCCCC
Q 001179 490 TSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAY 569 (1131)
Q Consensus 490 ~~i~~~L~~lG~~~~~~~~~~~~~~~~~~V~lnG~~iG~~~~~~~~~~~~~lr~~r~~~~~~i~~~~ei~~v~~~~~~~~ 569 (1131)
+|.++|.++||+++. +......++.++|||||+|||++ .++.+|++.||.+||++ .|+..++|+. +...
T Consensus 539 -pI~~~l~~~gme~le-~~~~~~~~~~tkVfvNG~wVGvh--~dp~~Lv~~lR~lRR~g--~Is~eVSIvr-----dir~ 607 (1210)
T 3h0g_B 539 -PIIEFLEEWGLETLE-DYNPSASPNATKVFVNGVWLGVH--RDPAHLTETLRSLRRRL--DISAEVSIVR-----DIRE 607 (1210)
T ss_dssp -HHHHHHHSSSCCCCS-CCCSSSSSSSCCCCSTTCCCCCC--SCHHHHHHHHHHHHTTT--SSCTTCCCCC-----CTTT
T ss_pred -HHHHHHHHhCCcchh-hcCcccCCCceEEEECCEEEEEe--CCHHHHHHHHHHHhhcC--CCCCceEEEe-----cCCC
Confidence 799999999999873 34444456789999999999996 46799999999999998 6887777753 2346
Q ss_pred CeEEEEcCCCcceeeEEEecCC-------CC-------------------------------CCcceeeecccceeeeee
Q 001179 570 PGLYLFTSPPKFVRPVRNISLP-------SE-------------------------------ESQNIELIGPFEQVFMEI 611 (1131)
Q Consensus 570 ~~i~i~td~GRl~RPv~~~~~~-------~~-------------------------------~~g~iE~i~~~Eq~~~~I 611 (1131)
++++||||+||+||||++|+++ +. ..|.|||||++||++++|
T Consensus 608 rE~~IfTDaGRv~RPLfvVen~~~~~~~g~L~l~k~hi~~L~~~~~~~~~~~~~~~~w~~Lv~~GvIEylDaeEEet~mI 687 (1210)
T 3h0g_B 608 KELRLFTDAGRICRPLFIVDNNPNSERRGELCIRKEHIQQLIEDKDRYDIDPEQRFGWTALVSSGLIEYLDAEEEETVMI 687 (1210)
T ss_dssp CCCCCCCSSCCBCCEEEECCCSSCSSSSCCCSSCHHHHHHHHHHHTCCCSCTTCCCSSTTTTTTTSEEECCTTTGGGCCE
T ss_pred CeEEEecCCCcccceEEEEccCCcccccccccccHHHHHHHhcccccccccccccCCHHHHHhCCCEEEecHhhhhceeE
Confidence 8999999999999999999864 10 258999999999999999
Q ss_pred ecCCCCCCC------------------------CCCCCceeEEeecCCCcccceeccccCCCCCCCcccccccccccccc
Q 001179 612 RCPDGGDGG------------------------RRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTM 667 (1131)
Q Consensus 612 a~~~~~~~~------------------------~~~~~~~th~EI~P~~ilsv~AslIPF~~HNqspRn~yqc~M~KQAi 667 (1131)
|++++|+.. ......||||||||++|||||||+|||||||||||||||||||||||
T Consensus 688 amtpeDL~~~r~~~~g~~~~~~~d~~~r~k~~~~~~~~~~THcEIhPsmILGIcASiIPFpdHNQSPRNtYQ~aMgKQam 767 (1210)
T 3h0g_B 688 AMSPEDLEASRQMQAGYEVKEELDPAQRVKPAPNPHVHAWTHCEIHPAMILGILASIIPFPDHNQSPRNTYQSAMGKQAM 767 (1210)
T ss_dssp ESCHHHHHHHHHHTTCCCCCCSSCCSSCCCCCSCCSCCSCSEECSCGGGSSCSSSTTSSSSTTSCSHHHHHHHHHHTTCC
T ss_pred EecHHHhhhhhhhhccccccccccchhhccccCCCcccccccccccchhhhhheeecccCccccccchhhhhhhhhcccc
Confidence 999988732 00124589999999999999999999999999999999999999999
Q ss_pred ccccceEEEecccceeeecCCCcceeecCcccccCcccCCCCcceEEEEEeccCCCCCceEEeeccccccCceeeeEEEE
Q 001179 668 GFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747 (1131)
Q Consensus 668 G~~~~n~~~R~D~~~y~L~ypQ~PLV~t~~~~~~~~~~~~~G~N~iVAv~~y~Gyn~EDaiiink~s~~rG~~~~~~y~~ 747 (1131)
|++++|+..|+||++|+|+|||+|||+|+.++.++++++|+|+||+||||||+||||||||||||+|+||||||+.+|++
T Consensus 768 G~~~~n~~~R~Dt~~~~L~yPQkPlv~T~~~e~~~~~elp~G~NaiVAvmsy~GYn~EDAiIink~sv~rg~~~s~~~~~ 847 (1210)
T 3h0g_B 768 GVYLTNYQVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSIIMNQASIDRGLFRSIFYRT 847 (1210)
T ss_dssp SCCCTTTTTSCCSSEEEESSCBCCSSBCTTSTTTTCTTSCSCCEECBEECCCSSSSCSSCEEEEHHHHTTTTTCEEEEEE
T ss_pred cccccccccccCccccEeecCcCccccchhHHHhCCCcccCccceEEEEeccCCCChhhheeeehhheecCceEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecccCCCccccccccccCCCC------hhhhcccCCCCCcccCcEEcCCCCeeEEeecCC--------------Cc
Q 001179 748 ETIDLSDDGNKVDRGQKLFRRNKDA------KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTT--------------NS 807 (1131)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~f~~~~~~------~~~~~~Ld~dGi~~~G~~v~~gdil~~~~~~~~--------------~~ 807 (1131)
|.+++... .....+.|..|+.. ...+++||+||||.+|+.|++|||||||.+|.. .+
T Consensus 848 y~~~~~~~---~~~~~~~~~~p~~~~~~~~~~~~~~~LD~dGi~~~G~~v~~gDiligK~~p~~~~~~~~~~~~~~~~~r 924 (1210)
T 3h0g_B 848 YTDQEKKI---GMTVMEEFERPVRSTTLRMKHGTYDKLEDDGLIAPGTRVSGEDIIIGKTAPIPLDHEELGQRTQLHAKR 924 (1210)
T ss_dssp EEECCCCC---SSSCCCCCCCCCTTSCCSCCSCCGGGCCTTSSCCTTCCCCTTCCCCCCCCCC-----------CCCCCC
T ss_pred EEEEeeec---CCCceeEEcCCCcchhcccchhhHhhcCCCCCcCCCCEecCCCEEEEEecCCCCCchhhcccccccccc
Confidence 98764322 12234567777543 235789999999999999999999999987642 24
Q ss_pred EEeeecCCCcceEEEEEEEeccCCCCCCeEEEEEEeeecCCCCCcccccccCCcceeeeeecCCCCCccCCCCCcccEEe
Q 001179 808 WRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLII 887 (1131)
Q Consensus 808 ~~~~~~~~~e~g~Vd~v~~~~~~~~~~~~~~~i~~r~~R~p~iGDKf~sRHGqKGvvs~i~~~~dmPf~~~~G~~pDiIi 887 (1131)
+.+++++++|.|+||+|.++.+++ +.+.|+|++|+.|+|++|||||||||||||||+|||+|||||+ +||++|||||
T Consensus 925 d~s~~~~~~e~g~Vd~V~~~~~~~--g~~~vkv~~~~~R~~~~GDK~a~RhGqKGvi~~i~~~edmPf~-~~G~~pDii~ 1001 (1210)
T 3h0g_B 925 DVSTPLRSTESGIVDQVMVTTNQE--GLKFVKVRMRSTRIPQIGDKFASRHGQKGTIGMTYRHEDMPFS-AQGIVPDIII 1001 (1210)
T ss_dssp CCCCCCCTTCCCCCCEEEEEECSS--SSEEEEEEECCCBCCCTTCEEECTTCCCEEEEEEECTTTSCCB-TTTBCCSEEC
T ss_pred eeeEEecCCCCeEEEEEEEEEecC--CCeEEEEEEEEecCCCchhhhhcccCCCceeeEEeccccCCcC-CCCCCCeEEE
Confidence 568899999999999999998865 4689999999999999999999999999999999999999999 9999999999
Q ss_pred CCCCCCCccchhHhHHHHHhhhccccCceeccccccccccccCCCCCCCCchhhHHHHHHHHHHCCCCCCCcEEEeeCCC
Q 001179 888 NPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVY 967 (1131)
Q Consensus 888 NPh~~PSRMtiGql~E~~~gk~~~~~g~~~d~tpf~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~e~~y~g~t 967 (1131)
||||||||||||||+|+++||||++.|.+.|+|||++. .++++++.|.++||+++|+|.||||+|
T Consensus 1002 NP~~~PSRMtigq~~E~~~g~~~~~~g~~~~~tpF~~~---------------~~~~~~~~l~~~g~~~~G~~~l~~g~t 1066 (1210)
T 3h0g_B 1002 NPHAIPSRMTVAHLVECQLSKVSALSGFEGDATPFTDV---------------TVEAVSKLLRSHGFQSRGFEVMYHGHT 1066 (1210)
T ss_dssp CGGGSTTSCCHHHHHHHHHHHHSSSSCCCCBCCSSCSC---------------CHHHHHHHHHTTTSCTTSCBCCBCSSS
T ss_pred CCCcCCCCccchhhhHhHHHHHHHhcCCceeeccCCCC---------------cHHHHHHHHHHcCcCCCCCEEEEcCCC
Confidence 99999999999999999999999999999999999876 588999999999999999999999999
Q ss_pred CcEeeeeeeeeceeEEeeccccccceeeeecccccceeecccCcccccCceeeeehhhhHHhhhchHHHHHHhhccCCCc
Q 001179 968 GTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDY 1047 (1131)
Q Consensus 968 G~~~~~~if~G~~yy~rL~Hmv~DK~~~R~~Gp~~~lTrQP~~Gr~~~GG~R~GEMErd~l~a~Gas~~l~erl~~~SD~ 1047 (1131)
|++|+++||+|++|||||+|||+||+|||++|||+.|||||++||+|+|||||||||||||+|||||++|+|||+.+||.
T Consensus 1067 g~~~~~~i~~G~~yy~kL~Hmv~dK~h~r~~gp~~~~t~QP~~gr~~~GG~r~GEME~~~l~a~Gaa~~l~e~l~~~SD~ 1146 (1210)
T 3h0g_B 1067 GRKLVAQVFLGPTYYQRLKHLVDDKIHARARGPVQILTRQPVEGRSRDGGLRFGEMERDCQISHGCSSVLRERLFDCSDA 1146 (1210)
T ss_dssp CCBCSSCBEECCEECEECSCCSTTTCEECSSCCBCSSSCSBCCSSTTCCCCCCCHHHHHHHHHHTBHHHHHHHHHTTTTC
T ss_pred CCCccccEEEEehHhhcchhhcccCcEEeccCCCchhccCCcccccccCCeeeehhhhhhhhhccHHHHHHHHhhcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeccccccccccccccccccccccccCCCCCCCCCCCeeeccCcCCCCcceecchHhHHHHHHHHHhCCceeEEEecc
Q 001179 1048 HVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127 (1131)
Q Consensus 1048 ~~~~vC~~Cg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~~~~~~v~iPy~~klL~~EL~sm~I~~~l~~~~ 1127 (1131)
+.++||..||+++..+ .+.+.++|+.|+++.++.++.||||||||+|||+||||.+||.+++
T Consensus 1147 ~~~~vC~~cg~~~~~~------------------~~~~~~~c~~c~~~~~i~~~~~p~~~k~l~~El~~~~i~~rl~~~~ 1208 (1210)
T 3h0g_B 1147 YRVIVCDICGLIAIAS------------------YKKDSYECRSCQNRTRFSQVYLPYAAKLLFQELMSMNIAPRLFTKN 1208 (1210)
T ss_dssp CEEEEESSSCCBCCCC------------------SSSCCCCCTTTCCSSCEEEEECCHHHHHHHHHHHTTTCCEECCCST
T ss_pred ceeEeecCCCCeeeec------------------ccCCceEcCccCCCCccceecCCHHHHHHHHHHHhCCCceEEEecC
Confidence 9999999999998654 2344579999999999999999999999999999999999999987
Q ss_pred C
Q 001179 1128 G 1128 (1131)
Q Consensus 1128 ~ 1128 (1131)
+
T Consensus 1209 ~ 1209 (1210)
T 3h0g_B 1209 H 1209 (1210)
T ss_dssp T
T ss_pred C
Confidence 5
No 2
>1twf_B DNA-directed RNA polymerase II 140 kDa polypeptid; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.1 PDB: 1i3q_B 1i6h_B 1k83_B* 1nik_B 1nt9_B 1pqv_B 1r5u_B 1r9s_B* 1r9t_B* 1sfo_B* 1twa_B* 1twc_B* 1i50_B* 1twg_B* 1twh_B* 1wcm_B 1y1v_B 1y1w_B 1y1y_B 1y77_B* ...
Probab=100.00 E-value=8.3e-267 Score=2522.49 Aligned_cols=1027 Identities=30% Similarity=0.472 Sum_probs=882.0
Q ss_pred ccccchhhHHHHHHHHHHHHHHhHHHHH---------------------------------------------------H
Q 001179 8 DFEPLRELVRHHIESFDYMLDEGLSEMF---------------------------------------------------D 36 (1131)
Q Consensus 8 ~~~~~~~Lv~~hi~SFn~Fi~~gl~~ii---------------------------------------------------~ 36 (1131)
++..+++|++|||||||+|+++||++++ +
T Consensus 36 ~~~~~~~Lv~~qidSFn~Fi~~gL~~iv~~~~~I~~~~~~~~~~~~~~~~~~~~l~f~~i~l~~P~~~e~~~~~~~l~P~ 115 (1224)
T 1twf_B 36 AFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLILEQLAQHTTESDNISRKYEISFGKIYVTKPMVNESDGVTHALYPQ 115 (1224)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTHHHHHHHTTCBCC------------------CCEECCCEEEEEEECCSSSCCEECCHH
T ss_pred HHHcCccHHHHHHHHHHHHHHHhHHHHHHhcCceeecCcccccccccccceEEEEEEEEEEEeCCceeccCCccccCCHH
Confidence 3557999999999999999999998877 5
Q ss_pred HHHHcCCeeeEEEEEEEEEEE-ecCCC------------c--eE--EEEEeecccceeeccCcccCCCCChHHHHhhccc
Q 001179 37 HCRQAKISYTGKLMADVEFQY-LDAGS------------P--VV--RERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEE 99 (1131)
Q Consensus 37 ecR~r~~TYsa~l~v~v~~~~-~~~~~------------~--~~--~~~v~iG~iPIMvkS~~C~L~~ls~~el~~~gE~ 99 (1131)
|||+|++||+|||+|+|++.+ +..+. + ++ +++|+||+|||||||++|||++++++||+++|||
T Consensus 116 EcRlR~lTYsapl~v~v~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~iG~iPIMlrS~~C~L~~~s~~el~~~gEc 195 (1224)
T 1twf_B 116 EARLRNLTYSSGLFVDVKKRTYEAIDVPGRELKYELIAEESEDDSESGKVFIGRLPIMLRSKNCYLSEATESDLYKLKEC 195 (1224)
T ss_dssp HHHHTTCCCEEEEECCEECCCCC-------------------------CCEEEEEECCTTSTTSGGGTCCHHHHHHTTCC
T ss_pred HHhhcCCccceeEEEEEEEEEEeCCcccccccccccccccccccccceeeEeCCCCeEeccCcccCCCCCHHHHHhhccC
Confidence 699999999999999995432 21111 1 22 4469999999999999999999999999999999
Q ss_pred cccCCcEEEEcCceeEEEEEEeccCCceEEEEeccccCCCcceeeEEEEEeeeecC--CCceEEEEEEEe-----CCeEE
Q 001179 100 AAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD--QSSVTLKLYYLL-----NGSVR 172 (1131)
Q Consensus 100 ~~D~GGYFIING~EKVIr~qi~~~~N~~~~~~r~s~~~r~~~~t~~~i~iRs~~~~--~~s~~~~l~~~~-----~g~~~ 172 (1131)
|+|+||||||||+||||++|+++++|+|+++. ++++.++.|.+.+||+.++ .++.|+.+++++ +|.+|
T Consensus 196 p~D~GGYFIING~ERVIv~Qe~~s~N~i~~~~-----~~~~~~~~~~~~irsv~~~~~~~~~~~~l~~~~~~~~~~~~i~ 270 (1224)
T 1twf_B 196 PFDMGGYFIINGSEKVLIAQERSAGNIVQVFK-----KAAPSPISHVAEIRSALEKGSRFISTLQVKLYGREGSSARTIK 270 (1224)
T ss_dssp TTCCCCSEEETTEEEEECEEEEECSSCCEEEE-----CCTTSSEEEEEEEECCCSSSCCCCCEEEEEEESCSSCSSCCEE
T ss_pred ccCCCCEEEEeCcEEEEEEeeeccCCeEEEEe-----ccCCCcceEEEEEEEEeccCCcceeEEEEEEeccccCCCCEEE
Confidence 99999999999999999999999999998863 3456678899999998876 567899999998 89999
Q ss_pred EEEEEecccccccHhhHHHhccCCCHHHHHHhhccccchhhhcccCCCCChhHHHHHHHHHHHHHhccccCHHHHHHHHh
Q 001179 173 LGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIG 252 (1131)
Q Consensus 173 l~~~~~k~~~~IPi~ilLkALg~~sD~eI~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~~~~~i~t~~~AL~yIG 252 (1131)
++|+..+. +||+++||||||.+||+||++.|+ ++ .+++.+.+.+..+|++.. .++|+++||.|||
T Consensus 271 vr~~~~k~--~IPi~illkALG~~sD~eI~~~i~--~~---------~~d~~~~~~l~~~l~e~~--~~~t~~~AL~yIg 335 (1224)
T 1twf_B 271 ATLPYIKQ--DIPIVIIFRALGIIPDGEILEHIC--YD---------VNDWQMLEMLKPCVEDGF--VIQDRETALDFIG 335 (1224)
T ss_dssp EECTTCSS--CEEHHHHHHHTTCCSHHHHHHHHC--CC---------TTCHHHHHHHHHHHHHTT--TCCSHHHHHHHHH
T ss_pred EEEecccc--cccHHHHHHHhcCCCHHHHHHHhc--cc---------CCcHHHHHHHHHHHHHhh--hcCCHHHHHHHHH
Confidence 99987654 599999999999999999999997 21 235666677777777653 5789999999999
Q ss_pred hc-ccccccCCCCccHHHHHHHHHHhhhcccCCCc----hhhHHHHHHHHHHHHhhcCCCCCCCCcccccccEeccchhh
Q 001179 253 EH-FQPVIDGLQSESYYAVAETVIRDYIFVHLNDN----NDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327 (1131)
Q Consensus 253 ~~-~r~~~~~~~~~~~~e~g~~~L~~~ll~Hl~~~----~~K~~~L~~MvrkLl~l~~G~~~~DD~D~l~NkRv~l~G~L 327 (1131)
++ ++.. .++.++.+.|+++|+++|||||+.. ..|++||++|++|||.++.|.+.+||+|||+||||+++|+|
T Consensus 336 ~r~~~~g---~~~~~~~~~a~~iL~~~~l~Hvg~~~~~~~~K~~~L~~mi~kLl~~~~g~~~~DD~DhlgnkRv~l~G~L 412 (1224)
T 1twf_B 336 RRGTALG---IKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPL 412 (1224)
T ss_dssp HTTSCTT---SCHHHHHHHHHHHHHHTSSTTTCCSSSCHHHHHHHHHHHHHHHHHHHTTSSCCCCTTCGGGEEEECHHHH
T ss_pred HhhccCC---CCCccHHHHHHHHHHhhcccccCCCccccccHHHHHHHHHHHHHHHhcCCCCCCCCccccccEEehhhHH
Confidence 99 6542 2356788999999999999999974 68999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHhcCCCcchHHHHHHHhcccCcccccccccccccceEE
Q 001179 328 ITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTV 407 (1131)
Q Consensus 328 l~~lf~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~It~~i~~~~sTGnw~~~~~~~~~q~~Gvsq 407 (1131)
|+.|||+.|+++++.+++.+++.+.+ ++.++ ++.++ ++++||++|++|||||||+++. .++++++||||
T Consensus 413 l~~lfr~~~~r~~~~i~~~l~~~~~~-~~~~~------~~~~i---~~~~It~~lk~~~aTGNw~~~k-~~~~~~sGvSQ 481 (1224)
T 1twf_B 413 LAQLFKTLFKKLTKDIFRYMQRTVEE-AHDFN------MKLAI---NAKTITSGLKYALATGNWGEQK-KAMSSRAGVSQ 481 (1224)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCC---------------CCC---CTHHHHHHHHHHHHHCCCC----------CCCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc-ccccc------hhhhh---cccchhhcchhheeeccccccc-cccccccceeE
Confidence 99999999999999999888776543 22222 22334 3458999999999999999876 57899999999
Q ss_pred EccccchHHHhhhccccccCCccccccccccccccCCcccccccCCCCCCccccccccccceEEEeeccCCCCcccccch
Q 001179 408 QAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSK 487 (1131)
Q Consensus 408 vleRln~~~~lSh~Rrv~rg~~~~~~K~t~~R~Lhps~wGfICPveTPEG~~CGLvk~LA~~a~It~~~~~~~~~~~~~~ 487 (1131)
+|+|+||+|+||||||+|+ ++++++|+++||+|||||||||||+|||||++||||||||+||+||++.+.+
T Consensus 482 vldr~n~ls~LSH~RRi~~-~~~r~~k~~~~R~LHpshwG~iCPiETPEG~~cGLVknLAl~a~Is~g~~~~-------- 552 (1224)
T 1twf_B 482 VLNRYTYSSTLSHLRRTNT-PIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPM-------- 552 (1224)
T ss_dssp ECCCSSHHHHHHHHTEEEC-CC------CCTTSCCGGGTTTBCSSCCCSGGGBTTEEEBCTTCEECCCCCCH--------
T ss_pred eecccchhhhhhhhhcccc-cccccccccccccccCccceeecCCCCCCCcccchhhhHHhhCcccCCCCHH--------
Confidence 9999999999999999998 5789999999999999999999999999999999999999999999876554
Q ss_pred hhhHHHHHHHhcCceecCcccccCCCCCceEEEECCEEEeeecCchHHHHHHHHHHHHhhcCCCCCCCceEEEEeCCCCC
Q 001179 488 MRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGG 567 (1131)
Q Consensus 488 ~~~~i~~~L~~lG~~~~~~~~~~~~~~~~~~V~lnG~~iG~~~~~~~~~~~~~lr~~r~~~~~~i~~~~ei~~v~~~~~~ 567 (1131)
+|.++|.++||+++. +......++.++|||||+|||++. ++..+++.||.+||.+ .|+..+||++..
T Consensus 553 ---pi~~~l~~~G~~~l~-e~~~~~~~~~~kVfvnG~~vG~~~--~p~~lv~~lr~lRR~g--~i~~evsiv~d~----- 619 (1224)
T 1twf_B 553 ---PIITFLSEWGMEPLE-DYVPHQSPDATRVFVNGVWHGVHR--NPARLMETLRTLRRKG--DINPEVSMIRDI----- 619 (1224)
T ss_dssp ---HHHHHHHHTTCEEGG-GCCGGGCTTCEEEEETTEEEEEES--CHHHHHHHHHHHHHHT--SSCTTCEEEEET-----
T ss_pred ---HHHHHHHHcCCccee-ecccccCCCceEEEECCEEEEEeC--CHHHHHHHHHHHHhcc--CCCCeEEEEEec-----
Confidence 799999999999863 222223356799999999999974 6799999999999998 788888888764
Q ss_pred CCCeEEEEcCCCcceeeEEEecCCC-------------------------------C---------CCcceeeeccccee
Q 001179 568 AYPGLYLFTSPPKFVRPVRNISLPS-------------------------------E---------ESQNIELIGPFEQV 607 (1131)
Q Consensus 568 ~~~~i~i~td~GRl~RPv~~~~~~~-------------------------------~---------~~g~iE~i~~~Eq~ 607 (1131)
..++++||||+||++|||++|+++. + ..|.|||||++||+
T Consensus 620 r~~ei~I~TD~GRv~RPl~vV~~~~~~~~~~l~l~k~hi~~L~~~~~~~~~~~~~~~~~~~w~~Lv~~G~iEyldaeEEe 699 (1224)
T 1twf_B 620 REKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHIAKLMATEYQDIEGGFEDVEEYTWSSLLNEGLVEYIDAEEEE 699 (1224)
T ss_dssp TTTEEEEECCSCCEEEEEEEEECCCTTSSCEESCCHHHHHHHHHHHHCC---------CCCHHHHHHTTSEEEEEHHHHT
T ss_pred ccCeEEEeccCceeeeeEEEecCCCccccccceecHHHHHHhhhccccccccccccccccchhHhccCCcEEEcChhhhc
Confidence 3579999999999999999998761 0 14689999999999
Q ss_pred eeeeecCCCCCCCCC-------------------CCCceeEEeecCCCcccceeccccCCCCCCCccccccccccccccc
Q 001179 608 FMEIRCPDGGDGGRR-------------------NAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMG 668 (1131)
Q Consensus 608 ~~~Ia~~~~~~~~~~-------------------~~~~~th~EI~P~~ilsv~AslIPF~~HNqspRn~yqc~M~KQAiG 668 (1131)
+++||++++++.... ....+|||||||++||||+||+||||||||||||||||||||||||
T Consensus 700 ~~~Ia~~~~dl~~~~~~~~~~~~~~~~~R~~~~~~~~~~Th~EI~Ps~ILgV~ASlIPF~dHNqSpRn~yqs~M~kQA~g 779 (1224)
T 1twf_B 700 SILIAMQPEDLEPAEANEENDLDVDPAKRIRVSHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMG 779 (1224)
T ss_dssp TCCEESSGGGGCC---------CCCTTSCCCCCCCCSCCCEECSCGGGGSCTTGGGSSSGGGSCHHHHHHHHHHGGGBCB
T ss_pred CcEEeccccccCcccccccccccccccccccCCcCchhhcccccCCccccceeecccCCccccccchhhhcccccccccc
Confidence 999999998886520 0125899999999999999999999999999999999999999999
Q ss_pred cccceEEEecccceeeecCCCcceeecCcccccCcccCCCCcceEEEEEeccCCCCCceEEeeccccccCceeeeEEEEE
Q 001179 669 FSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748 (1131)
Q Consensus 669 ~~~~n~~~R~D~~~y~L~ypQ~PLV~t~~~~~~~~~~~~~G~N~iVAv~~y~Gyn~EDaiiink~s~~rG~~~~~~y~~~ 748 (1131)
++.+|+..|.|++.|.|+|||+|||+|+.++.++++|+|+|+||+||||||+||||||||||||+|+|||+||+.+|++|
T Consensus 780 ~~~~n~~~r~dt~~~~l~ypQkPlV~t~~~~~~~~~elp~G~N~iVAvm~y~GYN~EDAiIin~~sv~rg~~~s~~~~~y 859 (1224)
T 1twf_B 780 VFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSY 859 (1224)
T ss_dssp CSCTTTTTCCCSEEEEESSCBCCSEECTTHHHHTTTTSCCCEEEEEEECBSSSTTTTTEEEEEHHHHHTTTTCEEEEEEE
T ss_pred cccceeeeecccccceeecCcCCeEEcccccccccccCCCCeeEEEEEecccCcccchhhhhhhhHHhcCCeeEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccCCCccccccccccCCC------ChhhhcccCCCCCcccCcEEcCCCCeeEEeecCC--------------CcE
Q 001179 749 TIDLSDDGNKVDRGQKLFRRNKD------AKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTT--------------NSW 808 (1131)
Q Consensus 749 ~~~~~~~~~~~~~~~~~f~~~~~------~~~~~~~Ld~dGi~~~G~~v~~gdil~~~~~~~~--------------~~~ 808 (1131)
.++....+ .+..+.|..|+. ....+++||+||||++|+.|++|||||||++|+. .++
T Consensus 860 ~~~~~~~~---~~~~e~~~~P~~~~~~~~~~~~~~~LD~dGiv~~G~~V~~gDilvgK~~p~~~~~~~~~~~~~~~~~rd 936 (1224)
T 1twf_B 860 MDQEKKYG---MSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVIIGKTTPISPDEEELGQRTAYHSKRD 936 (1224)
T ss_dssp EECCCCSC---TTCCCEESCCCCSSSCBCCSSCGGGCCTTSBCCTTCEECTTCEEECEECCCC-------------CCBB
T ss_pred EEEeeeCC---CCceeEecCCChhhccCccHHHHhhcccCCccCCccEecCCCEEEEEecCCCccccccccccccCccce
Confidence 88653321 122345666643 2355799999999999999999999999998843 346
Q ss_pred EeeecCCCcceEEEEEEEeccCCCCCCeEEEEEEeeecCCCCCcccccccCCcceeeeeecCCCCCccCCCCCcccEEeC
Q 001179 809 RTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIIN 888 (1131)
Q Consensus 809 ~~~~~~~~e~g~Vd~v~~~~~~~~~~~~~~~i~~r~~R~p~iGDKf~sRHGqKGvvs~i~~~~dmPf~~~~G~~pDiIiN 888 (1131)
.|++++++|.|+||+|.++.+++| .+.|+|++|+.|+|+||||||||||||||||+|||+|||||+ +||++||||||
T Consensus 937 ~s~~~~~~e~g~Vd~V~~~~~~~g--~~~vkV~ir~~R~p~iGDKfasRHGqKGvis~i~p~eDMPf~-~dG~~pDiIiN 1013 (1224)
T 1twf_B 937 ASTPLRSTENGIVDQVLVTTNQDG--LKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYRREDMPFT-AEGIVPDLIIN 1013 (1224)
T ss_dssp CCEECCTTCCEEEEEEEEEECSSS--CEEEEEEEEEEECCCTTCEEECTTSCEEEEEEEECTTTSCEE-TTSCCCSEEEC
T ss_pred eEEEeeCCCCeEEEEEEEEecCCC--CEEEEEEEEecCCCCchhhhhhhccCcceeeeecccccCCcC-CCCCCccEEeC
Confidence 789999999999999999988654 689999999999999999999999999999999999999999 99999999999
Q ss_pred CCCCCCccchhHhHHHHHhhhccccCceeccccccccccccCCCCCCCCchhhHHHHHHHHHHCCCCCCCcEEEeeCCCC
Q 001179 889 PHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYG 968 (1131)
Q Consensus 889 Ph~~PSRMtiGql~E~~~gk~~~~~g~~~d~tpf~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~e~~y~g~tG 968 (1131)
|||||||||||||+|+++||||++.|.+.|+|||++. .++++++.|.++||+++|+|.||||+||
T Consensus 1014 Phg~PSRMtiGqllE~~lgka~~~~G~~~datpF~~~---------------~~~~i~~~L~~~g~~~~G~e~ly~G~TG 1078 (1224)
T 1twf_B 1014 PHAIPSRMTVAHLIECLLSKVAALSGNEGDASPFTDI---------------TVEGISKLLREHGYQSRGFEVMYNGHTG 1078 (1224)
T ss_dssp GGGSTTTTCHHHHHHHHHHHHHHHHCSCEECCSSSSC---------------CHHHHHHHHHTTTSCTTSEECEECTTTC
T ss_pred CCcCccccccchhHHHHhhHHHHhcCceeecCCCCCc---------------cHHHHHHHHHHcCCCCCCCEEeecCCCC
Confidence 9999999999999999999999999999999999876 5899999999999999999999999999
Q ss_pred cEeeeeeeeeceeEEeeccccccceeeeecccccceeecccCcccccCceeeeehhhhHHhhhchHHHHHHhhccCCCcc
Q 001179 969 TELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYH 1048 (1131)
Q Consensus 969 ~~~~~~if~G~~yy~rL~Hmv~DK~~~R~~Gp~~~lTrQP~~Gr~~~GG~R~GEMErd~l~a~Gas~~l~erl~~~SD~~ 1048 (1131)
++|+++||+||+|||||+|||+||+||||||||+.|||||++||+|+|||||||||||||+|||||++|||||+.+||++
T Consensus 1079 ~~~~~~i~vG~~YyqkL~HmV~DKihaRs~GP~~~lT~QP~~Gr~r~GG~RfGEMErd~L~a~Gaa~~L~ErL~~~SD~~ 1158 (1224)
T 1twf_B 1079 KKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAASFLKERLMEASDAF 1158 (1224)
T ss_dssp CBCSSCEEEEEEEEEEBSSCGGGTCEEECCCC----------------CCCCCHHHHHHHHHHTCHHHHHHHHCCSSCCC
T ss_pred CCccceEEEehhHhhcchhhcccCceEEeeCCCcccccCCCcccccCCceecchhhhhhHHhccHHHHHHHHHhcCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceecccccccc-ccccccccccccccccCCCCCCCCCCCeeeccCcCCCCcceecchHhHHHHHHHHHhCCceeEEEecc
Q 001179 1049 VADVCSLCGSV-LTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGD 1127 (1131)
Q Consensus 1049 ~~~vC~~Cg~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~~~~~~v~iPy~~klL~~EL~sm~I~~~l~~~~ 1127 (1131)
.++||..||++ ++.. ..++.++|+.|+++.++.++.||||||||+|||+||||+++|.+++
T Consensus 1159 ~~~vC~~cG~~~~~~~------------------~~~~~~~c~~c~~~~~i~~~~iPysfklL~~EL~sm~i~~~l~~~~ 1220 (1224)
T 1twf_B 1159 RVHICGICGLMTVIAK------------------LNHNQFECKGCDNKIDIYQIHIPYAAKLLFQELMAMNITPRLYTDR 1220 (1224)
T ss_dssp EEEEESSSCSSCCEEE------------------TTTTEEEBTTTTBSSSEEEEECCHHHHHHHHHHHHTTBCCEEESCS
T ss_pred eeEeeccCCCeeeecc------------------cccCceECCcCCCCCccccccCCHhHHHHHHHHHHCCCeeEEEecc
Confidence 99999999999 5433 2334678999998899999999999999999999999999999988
Q ss_pred CC
Q 001179 1128 GA 1129 (1131)
Q Consensus 1128 ~~ 1129 (1131)
.+
T Consensus 1221 ~~ 1222 (1224)
T 1twf_B 1221 SR 1222 (1224)
T ss_dssp SC
T ss_pred cc
Confidence 76
No 3
>4ayb_B DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_B 2y0s_B 2waq_B 4b1o_B 4b1p_R 2pmz_B 3hkz_B
Probab=100.00 E-value=3.8e-244 Score=2329.60 Aligned_cols=1013 Identities=28% Similarity=0.452 Sum_probs=889.2
Q ss_pred ccccchhhHHHHHHHHHHHHHHhHHHHH---------------------------------------HHHHHcCCeeeEE
Q 001179 8 DFEPLRELVRHHIESFDYMLDEGLSEMF---------------------------------------DHCRQAKISYTGK 48 (1131)
Q Consensus 8 ~~~~~~~Lv~~hi~SFn~Fi~~gl~~ii---------------------------------------~ecR~r~~TYsa~ 48 (1131)
+|.+.++||+|||||||||+++||++|+ +|||+|++||+||
T Consensus 19 ~~f~~~gLV~~qidSfn~Fl~~gL~~i~~~~~pI~~~~~~~~l~f~~~~l~~P~~~e~d~~~~~l~P~EcR~r~~TYsap 98 (1131)
T 4ayb_B 19 AYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEIPTEIPGLKVRLGKIRIGKPRVRESDRGEREISPMEARLRNLTYAAP 98 (1131)
T ss_dssp HHHHHSCSSCHHHHHHHHHHHTTTHHHHHHHCSCCCSSTTCEEEEEEEEECCSEEEETTTEEEECCHHHHHHHTCCCEEE
T ss_pred HHhCCCCCcHHHHHHHHHHHHhCHHHHHHhcCCeeecCCCEEEEEEEEEEeCCeeecCCCCcCccCHHHHHhcCCCccce
Confidence 4556789999999999999999999999 7999999999999
Q ss_pred EEEEEEEEEecCCCceEEEEEeecccceeeccCcccCCCCChHHHHhhccccccCCcEEEEcCceeEEEEEEeccCCceE
Q 001179 49 LMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPM 128 (1131)
Q Consensus 49 l~v~v~~~~~~~~~~~~~~~v~iG~iPIMvkS~~C~L~~ls~~el~~~gE~~~D~GGYFIING~EKVIr~qi~~~~N~~~ 128 (1131)
|+|++.+..+ +.++++++|++|+|||||+|++|||++++++||+++||||+|+||||||||+||||++|+.+++|.++
T Consensus 99 l~v~v~~~~~--~~~~~~~~v~lG~iPiM~~S~~C~L~~~s~~el~~~gEc~~D~GGyFIING~ERVIv~Q~~~spn~~~ 176 (1131)
T 4ayb_B 99 LWLTMIPVEN--NIEAEPEEVYIGDLPIMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVNGSERVIVTQEDLAPNRVL 176 (1131)
T ss_dssp EEEEEEEEET--TEECCCEEEEEEEEECCTTSTTSGGGGCCHHHHHHHTCCTTCCCCCEEETTEEEEECEEEEECCSSCE
T ss_pred EEEEEEEEEC--CcEEEEEEEEEEECCEEeCCCcccCCCCCHHHHHhcCCCcCCCCcEEEeCCEEEEEEEeeccCCCeEE
Confidence 9999998876 55667789999999999999999999999999999999999999999999999999999999999988
Q ss_pred EEEeccccCCCcceeeEEEEEeeeecCCCceEEEEEEEeCCeEEEEEEEecccccccHhhHHHhccCCCHHHHHHhhccc
Q 001179 129 SMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208 (1131)
Q Consensus 129 ~~~r~s~~~r~~~~t~~~i~iRs~~~~~~s~~~~l~~~~~g~~~l~~~~~k~~~~IPi~ilLkALg~~sD~eI~~~I~~~ 208 (1131)
.... +++..++-.+..+++...+ +..+.++++++|.++++|...+ .+||+++||||||+.||+||++.+..
T Consensus 177 ~~~~----~~~~~~~~~a~ii~~~~~~--~~~~~i~~~~~~~~~v~~~~~~--~~iPi~illrALG~~sD~eI~~~i~~- 247 (1131)
T 4ayb_B 177 VDTG----KTGSNITHTAKIISSTAGY--RVPVTIERLKDGTFHVSFPAVP--GKIPFVILMRALGILTDRDIVYAVSL- 247 (1131)
T ss_dssp EEEC----CTTCSEEEEEECEEECSSC--EEECCEEEETTTCCEECCSSSC--CCEEHHHHHHHHTCCSHHHHHHHHCS-
T ss_pred EEec----cCCCcEEEEEEEEECCCCc--eeeEEEEEeCCCEEEEEEcCcC--ceeeHHHHHHHhCCcchhhHHHHhcc-
Confidence 7543 2233344333334433222 3346789999999888876544 36999999999999999999999972
Q ss_pred cchhhhcccCCCCChhHHHHHHHHHHHHHhccccCHHHHHHHHhhcccccccCCCCccHHHHHHHHHHhhhcccCCC---
Q 001179 209 YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLND--- 285 (1131)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~lL~~~~~~~i~t~~~AL~yIG~~~r~~~~~~~~~~~~e~g~~~L~~~ll~Hl~~--- 285 (1131)
++ .+.+.+...+++ ...+.|+++||.|||++++.. .+..+..+.|+++|++++|||++.
T Consensus 248 -~~------------~~~~~l~~~~~~--~~~i~~~~~al~~i~~r~~~~---~~~~~~~~~a~~il~~~~l~hl~~~~~ 309 (1131)
T 4ayb_B 248 -DP------------EIQNELFPSLEQ--ASSIANVDDALDFIGSRVAIG---QKRENRIEKAQQIIDKYFLPHLGTSAD 309 (1131)
T ss_dssp -CH------------HHHTTTHHHHHH--HTTTCCSSHHHHHHHHHHHCS---SCHHHHHHHHHHHHHTTSSTTSCSSTT
T ss_pred -cH------------HHHHHHHHHHHH--hcccccHHHHHHHHhhhhhcC---CCCchhHHHHHHHHHHhhccccccccc
Confidence 11 111112222222 357899999999999998743 334567889999999999999984
Q ss_pred -chhhHHHHHHHHHHHHhhcCCCCCCCCcccccccEeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccchhH
Q 001179 286 -NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLA 364 (1131)
Q Consensus 286 -~~~K~~~L~~MvrkLl~l~~G~~~~DD~D~l~NkRv~l~G~Ll~~lf~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 364 (1131)
...|+.+|++|++||+.+..|.+.+||+|||+||||+++|+||+++||..|.++.+.++..+.+...+ .+.++
T Consensus 310 ~~~~K~~~L~~mi~~Ll~l~~g~~~~DD~Dhl~NkRvr~vGeLl~~~fr~~l~r~~r~ir~~~~~~~~~-~~~~~----- 383 (1131)
T 4ayb_B 310 DRRKKAYYLAYAISKVIELYLGRREPDDKDHYANKRLRLAGDLFASLFRVAFKAFVKDLTYQLEKSKVR-GRKLA----- 383 (1131)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTSSCCCCTTSGGGEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT-CSCCC-----
T ss_pred chhHHHHHHHHHHHHHHHHHcCCCCCCCCcchhcceecchhHHHHHHHHHHHHHHHHHhhhhcccchhc-ccccc-----
Confidence 35799999999999999999999999999999999999999999999999999888888777765433 22222
Q ss_pred HHHHHHhcCCCcchHHHHHHHhcccCcccccccccccccceEEEccccchHHHhhhccccccCCccccccccccccccCC
Q 001179 365 NIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPE 444 (1131)
Q Consensus 365 ~~~~~i~~~~~~~It~~i~~~~sTGnw~~~~~~~~~q~~GvsqvleRln~~~~lSh~Rrv~rg~~~~~~K~t~~R~Lhps 444 (1131)
++.++ +++.||++|++||+||||.. +++||||+++|+||+|+|||+||+|+| +++++|+++||+||||
T Consensus 384 -~~~li---~~~~it~~i~~~~aTGn~~~-------~~sglSQ~mdq~NpLs~lsH~RRlsag-l~rera~~evRdlHpS 451 (1131)
T 4ayb_B 384 -LKALV---RPDIVTERIRHALATGNWVG-------GRTGVSQLLDRTNWLSMLSHLRRVISS-LARGQPNFEARDLHGT 451 (1131)
T ss_dssp -HHHHC---CTHHHHHHHHHHHHTTBCSS-------SCBCCEEECCCSSHHHHHHHHTEEEEC-SCSSSCCHHHHSCCGG
T ss_pred -hhhhc---CCchhhhhhHHHHhhccccc-------CCCceEEEeccCCHHHHHHhhhhhcCC-cccccccccccccCHh
Confidence 34455 35689999999999999953 689999999999999999999999985 7899999999999999
Q ss_pred cccccccCCCCCCccccccccccceEEEeeccCCCCcccccchhhhHHHHHHHhcCceecCccc---c-----cCCCCCc
Q 001179 445 SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKL---V-----KSGPPAV 516 (1131)
Q Consensus 445 ~wGfICPveTPEG~~CGLvk~LA~~a~It~~~~~~~~~~~~~~~~~~i~~~L~~lG~~~~~~~~---~-----~~~~~~~ 516 (1131)
|||||||+|||||+|||||||||++|+|+.+.+.. ++.+++.++|+.+..... . .......
T Consensus 452 hyGriCPIETPEG~niGLI~sLA~~a~I~~g~~e~-----------~i~~~l~~~g~~~~e~~~~~~~~~~~~~~~~~~~ 520 (1131)
T 4ayb_B 452 QWGRMCPFETPEGPNSGLVKNLALMAQIAVGINEK-----------IVEKTLYEMGVVPVEEVIRRVTEGGEDQNEYLKW 520 (1131)
T ss_dssp GTTTBCSSCCCSSTTBTTEEEBBSSCEECCCCCHH-----------HHHHHHHHTTCEEHHHHHHTTTTC-----CCCCC
T ss_pred hccccccccCCCCccccccccceeeEEEecCCCCc-----------ceeeehhhcCceeeeeeehhhcccccccchhhhh
Confidence 99999999999999999999999999998654443 688889999998752100 0 0011234
Q ss_pred eEEEECCEEEeeecCchHHHHHHHHHHHHhhcCCCCCCCceEEEEeCCCCCCCCeEEEEcCCCcceeeEEEecCCCC---
Q 001179 517 LSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSE--- 593 (1131)
Q Consensus 517 ~~V~lnG~~iG~~~~~~~~~~~~~lr~~r~~~~~~i~~~~ei~~v~~~~~~~~~~i~i~td~GRl~RPv~~~~~~~~--- 593 (1131)
.+||+||+|+|++. ++..++..+|.+|+.+ .++..++|++... ...+++++++|+||++|||..++.+.+
T Consensus 521 ~~v~lng~~vg~~~--~~~~~~~~~~~~~~~~--~i~~~vsi~~~~~---~~~~~~~i~~d~~r~~rpv~~~~~~~p~v~ 593 (1131)
T 4ayb_B 521 SKVILNGRLVGYYR--DGEELAKKIRERRRKG--EISDEVNVGHIVT---DFINEVHVNCDSGRVRRPLIIVSNGNPLVT 593 (1131)
T ss_dssp CEEEETTEEEEECS--CHHHHHHHHHHHHHHT--SSCTTCEEEEECT---TTCCEEEEECCTTCEEEEEEEBSSSSBSCC
T ss_pred cceeecCceEEEec--cchhhhhhhhhhhccC--ccCceEEEeeccc---cccceeeeecCCcccccceEEeeccccccc
Confidence 68999999999985 5688999999999988 6777788877653 235789999999999999999877643
Q ss_pred ------------------CCcceeeecccceeeeeeecCCCCCCCCCCCCceeEEeecCCCcccceeccccCCCCCCCcc
Q 001179 594 ------------------ESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPR 655 (1131)
Q Consensus 594 ------------------~~g~iE~i~~~Eq~~~~Ia~~~~~~~~~~~~~~~th~EI~P~~ilsv~AslIPF~~HNqspR 655 (1131)
..|.|||+|++||++++||+.++++... +||+||+|+.++|++|++|||++||||||
T Consensus 594 ~~~~~~~~~g~~~~~~~~~~g~veyvd~~e~~~~~ia~~~~~~~~~-----~th~ei~p~~il~v~a~lipf~~~NqspR 668 (1131)
T 4ayb_B 594 REDIEKLDSGSITFDDLVRQGKIEYLDAEEEENAYVALEPSDLTPE-----HTHLEIWSPAILGITASIIPYPEHNQSPR 668 (1131)
T ss_dssp HHHHHHHHTTTCCHHHHHHTTSEEEEEHHHHTTCCEESSGGGCCTT-----CSEECSCGGGGSBTTGGGCSSGGGSCHHH
T ss_pred HHHHHHHhcCChhHHHHhhCCceeeeeccccceeEEEeeccccccc-----ccceeeccccccccccceecccccCccch
Confidence 2588999999999999999999988765 89999999999999999999999999999
Q ss_pred ccccccccccccccccceEEEecccceeeecCCCcceeecCcccccCcccCCCCcceEEEEEeccCCCCCceEEeecccc
Q 001179 656 NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSV 735 (1131)
Q Consensus 656 n~yqc~M~KQAiG~~~~n~~~R~D~~~y~L~ypQ~PLV~t~~~~~~~~~~~~~G~N~iVAv~~y~Gyn~EDaiiink~s~ 735 (1131)
|+|||||+|||||++.+|+..|.|++.|+|+|||+|||+|+.++.++++++|+|+|++||||||+||||||||||||+++
T Consensus 669 n~yq~~m~KQa~G~~~~~~~~r~D~~~~~l~ypQ~PlV~t~~~~~~~~~e~p~G~N~lVA~m~w~GYN~EDAIIine~~v 748 (1131)
T 4ayb_B 669 NTYQSAMAKQALGLYAANYQLRTDTRAHLLHYPQRPLVQTRALDIIGYTNRPAGNNAILAVISFTGYNMEDSIIMNRSSV 748 (1131)
T ss_dssp HHHHHHHGGGBCSCCCGGGGTCCCSEEEEESSCCCCSSBCHHHHHHTCTTSCCSEEEEEEECCCSSCCCTTCEEEEHHHH
T ss_pred heeccccccccCCceeecceeeeccccceeecCCccccccchhhhhccCCCCCceeEEEEEEccCCccHHHhhhhhcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCceeeeEEEEEEEEecccCCCccccccccc--cCCC----ChhhhcccCCCCCcccCcEEcCCCCeeEEeecCC----
Q 001179 736 DRGMCHGQIYQTETIDLSDDGNKVDRGQKLFR--RNKD----AKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTT---- 805 (1131)
Q Consensus 736 ~rG~~~~~~y~~~~~~~~~~~~~~~~~~~~f~--~~~~----~~~~~~~Ld~dGi~~~G~~v~~gdil~~~~~~~~---- 805 (1131)
+||+|+|+||++|+++..+.+...+ +.+. .|+. .+..+++||+||||++|+.|++||||+||++|+.
T Consensus 749 ~rg~ftSihi~~y~~e~r~~~~g~~---e~it~~~p~v~~~~~~~~~~~LDe~Gii~iGa~V~~gDilvGKvtP~~~~~~ 825 (1131)
T 4ayb_B 749 ERGMYRSTFFRLYSTEEVKYPGGQE---DKIVMPEPGVRGYKGKEYYRLLEDNGVVSPEVEVKGGDVLIGKVSPPRFLQE 825 (1131)
T ss_dssp TTTTTCEEEEEEEEEECCCCTTSCC---CCCCCCCSSCSSCCCGGGGTTCCTTSBCCTTCEECTTCEEECCCCCCC----
T ss_pred hcccceeeEEEEEEEEEEecCCCCc---eEEecCCccccccchHHHhhcCCccccccCCcEecCCCEEEEEecCCcchhh
Confidence 9999999999999988766553321 2233 3443 4566889999999999999999999999988742
Q ss_pred ---------CcEEeeecCCCcceEEEEEEEeccCCCCCCeEEEEEEeeecCCCCCcccccccCCcceeeeeecCCCCCcc
Q 001179 806 ---------NSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS 876 (1131)
Q Consensus 806 ---------~~~~~~~~~~~e~g~Vd~v~~~~~~~~~~~~~~~i~~r~~R~p~iGDKf~sRHGqKGvvs~i~~~~dmPf~ 876 (1131)
.++.+++++++|.|+||+|.++.+++ +.+.|+|++|+.|+|+||||||||||||||||+|||+|||||+
T Consensus 826 ~~~~~~~~~~~d~sl~~~~g~~g~Vd~v~~~~~~~--~~~~vkV~i~~~R~~~vGDK~agRHGnKGvvs~i~p~eDMPf~ 903 (1131)
T 4ayb_B 826 FKELSPEQAKRDTSIVTRHGEMGIVDLVLITETAE--GNKLVKVRVRDLRIPSIGDKFASRHGQKGVIGMLIPQVDMPYT 903 (1131)
T ss_dssp -------CCCCCCCEECCTTCCEEEEEEEEEECSS--SCEEEEEEEEEEECCCTTCEEEETTSCEEEEEEEECTTTSEEE
T ss_pred hhhcCcceeeeeeeEEccCCCceEEEEEEEeeccC--CceEEEEEEeccccCcccccccccccccceeeeecccccCCcC
Confidence 24668999999999999999998765 4689999999999999999999999999999999999999999
Q ss_pred CCCCCcccEEeCCCCCCCccchhHhHHHHHhhhccccCceeccccccccccccCCCCCCCCchhhHHHHHHHHHHCCCCC
Q 001179 877 GVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNY 956 (1131)
Q Consensus 877 ~~~G~~pDiIiNPh~~PSRMtiGql~E~~~gk~~~~~g~~~d~tpf~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ 956 (1131)
+||++|||||||||||||||||||+|+++||||++.|.+.|+|||.+. +++++++.|.++||++
T Consensus 904 -~dG~~~DiilNP~gvPSRMniGqilE~~~gk~~~~~g~~~~atpf~~~---------------~~e~~~~~l~~~g~~~ 967 (1131)
T 4ayb_B 904 -VKGVVPDVILNPHALPSRMTLGQIMEGIAGKYAALSGNIVDATPFYKT---------------PIEQLQNEILKYGYLP 967 (1131)
T ss_dssp -TTSCCCSEECCTTSSTTTTCHHHHHHHHHHHHHHHHCCCCBCCTTSSC---------------CTHHHHHHHHHTTSCT
T ss_pred -CCCCCccEEECCCCCcccCcHHHHHHHHHHHHHHhCCCceecCccCCC---------------cHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999999999999876 5789999999999999
Q ss_pred CCcEEEeeCCCCcEeeeeeeeeceeEEeeccccccceeeeecccccceeecccCcccccCceeeeehhhhHHhhhchHHH
Q 001179 957 HGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYL 1036 (1131)
Q Consensus 957 ~G~e~~y~g~tG~~~~~~if~G~~yy~rL~Hmv~DK~~~R~~Gp~~~lTrQP~~Gr~~~GG~R~GEMErd~l~a~Gas~~ 1036 (1131)
+|+|.||||+||++|+++||||++|||||+|||+||+||||||||++|||||++||||+|||||||||||||+|||||++
T Consensus 968 ~g~~~lydG~TGe~~~~~i~vG~~Yy~kL~HmV~DKihaRs~GP~s~~TqQPl~Gra~~GG~RfGEME~~aL~a~Gaa~~ 1047 (1131)
T 4ayb_B 968 DATEVTYDGRTGQKIKSRIYFGVVYYQKLHHMVADKIHARARGPVQILTRQPTEGRAREGGLRFGEMERDCLIGFGTAML 1047 (1131)
T ss_dssp TSEECEEETTTCCBCSSCEEEEEEEEEEBSCCHHHHCEEESSCCBCTTTCCBCSSGGGTCCCEECHHHHHHHHHHTCHHH
T ss_pred CCCEEEeCCCCCCEecCcEEEEhhhhhccchhhccCCEeeccCCCCCcccCCCCCcccCCCcceeHHHHHHHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCCccceeccccccccccccccccccccccccCCCCCCCCCCCeeeccCcCCCCcceecchHhHHHHHHHHHh
Q 001179 1037 LHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAA 1116 (1131)
Q Consensus 1037 l~erl~~~SD~~~~~vC~~Cg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~~~~~~v~iPy~~klL~~EL~s 1116 (1131)
|||||+.+||++.++||..||+++.+. ...+.++|+.|+++.++.++.||||||||+|||+|
T Consensus 1048 LqE~L~~~SD~~~~~vc~~cG~~~~~~------------------~~~~~~~c~~~~~~~~i~~~~iP~sfk~L~~EL~s 1109 (1131)
T 4ayb_B 1048 LKDRLLDNSDRTTIYVCDQCGYIGWYD------------------KNKNKYVCPIHGDKSNLFPVTVSYAFKLLIQELMS 1109 (1131)
T ss_dssp HHHHTTTTTCEEEEEECSSSCCBCEEE------------------TTTTEEECSSCSSSSCCEEEEEEHHHHHHHHHHHT
T ss_pred HHHHhhccCCccceeeccCCCceEEEe------------------ccCCceeCCccCCCCCccccCCCHHHHHHHHHHHH
Confidence 999999999999999999999998765 23346789999998999999999999999999999
Q ss_pred CCceeEEEeccCC
Q 001179 1117 MNIKITLQLGDGA 1129 (1131)
Q Consensus 1117 m~I~~~l~~~~~~ 1129 (1131)
|||+++|.+++.+
T Consensus 1110 m~i~~~l~~~d~~ 1122 (1131)
T 4ayb_B 1110 MIISPRLILEDRV 1122 (1131)
T ss_dssp TTCEEEEEEEESS
T ss_pred CCcceEEEecccc
Confidence 9999999998765
No 4
>2a6h_C DNA-directed RNA polymerase beta chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.1 PDB: 1smy_C* 1zyr_C* 1iw7_C* 2a69_C* 2a6e_C 2a68_C* 2be5_C* 2cw0_C 2o5i_C 2o5j_C* 2ppb_C* 3aoh_C* 3aoi_C* 3dxj_C* 3eql_C* 1ynj_C* 1ynn_C* 2gho_C 1hqm_C 1l9u_C ...
Probab=100.00 E-value=1.2e-214 Score=2000.23 Aligned_cols=890 Identities=22% Similarity=0.306 Sum_probs=734.5
Q ss_pred CccccchhhHHHHHHHHHHHH----------HHhHHHHH--------------------------------HHHHHcCCe
Q 001179 7 ADFEPLRELVRHHIESFDYML----------DEGLSEMF--------------------------------DHCRQAKIS 44 (1131)
Q Consensus 7 ~~~~~~~~Lv~~hi~SFn~Fi----------~~gl~~ii--------------------------------~ecR~r~~T 44 (1131)
..+..+++|+++|++|||||+ ++||++++ +|||+|++|
T Consensus 10 ~~~~~~p~Lv~~QidSFn~Fl~~~~~~~~~~~~GL~~i~~~~~pI~~~~~~~~~~~l~f~~~~l~~P~~~p~Ecr~r~lT 89 (1119)
T 2a6h_C 10 REVIPLPPLTEIQVESYRRALQADVPPEKRENVGIQAAFRETFPIEEEDKGKGGLVLDFLEYRLGEPPFPQDECREKDLT 89 (1119)
T ss_dssp CCCSCCCCTTHHHHHHHHHHSCTTSCTTSSCCCHHHHHHHHHCSEEECCSSSCCEEEEECCCCBCCCSSCHHHHHHTTCC
T ss_pred cccccCcCHHHHHHHHHHHHHccCCccccchhhhHHHHHHhcCCEeccCCCCCeEEEEEEEEEEcCCCCCHHHHHhcCCc
Confidence 456789999999999999999 99999998 999999999
Q ss_pred eeEEEEEEEEEEEecCCCceEEEEEeecccceeeccCcccCCCCChHHHHhhccccccCCcEEEEcCceeEEEEEEeccC
Q 001179 45 YTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQ 124 (1131)
Q Consensus 45 Ysa~l~v~v~~~~~~~~~~~~~~~v~iG~iPIMvkS~~C~L~~ls~~el~~~gE~~~D~GGYFIING~EKVIr~qi~~~~ 124 (1131)
|+|||+|+++++.+ +++++++++|++|+||||+. ||||||||+||||++|+++++
T Consensus 90 YsapL~V~v~l~~~-~~~~ik~~~V~iG~iPiMt~------------------------gGyFIING~ERVIVsQ~~rsp 144 (1119)
T 2a6h_C 90 YQAPLYARLQLIHK-DTGLIKEDEVFLGHIPLMTE------------------------DGSFIINGADRVIVSQIHRSP 144 (1119)
T ss_dssp CEEEBCCCEEECCS-SSCCEECCCCCCCEEECCCT------------------------TSCCCSSSSCEEECEEEEECS
T ss_pred ccceEEEEEEEEEC-CCceeeeeEEEecCCCeECC------------------------CcEEEEeCeEEEEEEEEecCC
Confidence 99999999999764 23556667899999999995 999999999999999999999
Q ss_pred CceEEEEeccccCCC-cceeeEEEEEeeeecCCCceEEEEEEEeCCeEEEEEEEecccccccHhhHHHhccCCCHHHHHH
Q 001179 125 NYPMSMVRSSFRDRR-EGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFN 203 (1131)
Q Consensus 125 N~~~~~~r~s~~~r~-~~~t~~~i~iRs~~~~~~s~~~~l~~~~~g~~~l~~~~~k~~~~IPi~ilLkALg~~sD~eI~~ 203 (1131)
|.++. ..+.+++ ..|+..+++.||+ |+.+.+++++.+|+++.. .+||+++||||||+ ||+||++
T Consensus 145 gv~~~---~~~~~~g~~~ysa~ii~~rgs-------~l~~~~d~~~~i~vri~r----~kIPi~ilLrALG~-sD~eIl~ 209 (1119)
T 2a6h_C 145 GVYFT---PDPARPGRYIASIIPLPKRGP-------WIDLEVEPNGVVSMKVNK----RKFPLVLLLRVLGY-DQETLAR 209 (1119)
T ss_dssp CEEEE---CCSSCSSCCEEEECCCSSSSC-------CEEEEEETTTEEEEESSS----SEECHHHHHHHHTC-CHHHHHH
T ss_pred cEEEE---eeccCCCceEEEEEEEeccCc-------eEEEEEcCCCEEEEEEeC----cceeHHHHHHHHCC-CHHHHHH
Confidence 95543 3433333 5688777777664 777777889999998654 48999999999999 9999999
Q ss_pred hhccccchhhhcccCCCCChhHHHHHHHHHHHHHhc--cccCHHHHHHHHhhcccccccCCCCccHHHHHHHHHHhhh--
Q 001179 204 HLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDL--SLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYI-- 279 (1131)
Q Consensus 204 ~I~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~~~~--~i~t~~~AL~yIG~~~r~~~~~~~~~~~~e~g~~~L~~~l-- 279 (1131)
.|+. ++.+.+ .| .+. .+.|+++||.||+++++.. .....+.|+.+|.+.|
T Consensus 210 ~~~~--------------~~~~~~----tl---~~d~~~~~~~~eAl~~i~~~lr~g-----~~~~~e~a~~~l~~~ff~ 263 (1119)
T 2a6h_C 210 ELGA--------------YGELVQ----GL---MDESVFAMRPEEALIRLFTLLRPG-----DPPKRDKAVAYVYGLIAD 263 (1119)
T ss_dssp HHHS--------------SCTTHH----HH---SSCHHHHTCHHHHHHHHHHHSSSC-----CCSCCSSHHHHHTSSSSS
T ss_pred HHcc--------------CHHHHH----HH---HhhhcccCCHHHHHHHHHHHhcCC-----CCCcHHHHHHHHHHhhCC
Confidence 9972 111111 11 112 2567888999999888642 2223345666666666
Q ss_pred -----cccCCCc--h--------------hh-----HHHHHHHHHHHHhhcCCCC--CCCCcccccccEeccchhhHHHH
Q 001179 280 -----FVHLNDN--N--------------DK-----FNLLIFMLQKLFSLVDHTS--VSDNPDSLQNQEILLPGHLITIY 331 (1131)
Q Consensus 280 -----l~Hl~~~--~--------------~K-----~~~L~~MvrkLl~l~~G~~--~~DD~D~l~NkRv~l~G~Ll~~l 331 (1131)
|+|+|.. + .+ ..+|++|+++|+.+..|.+ .+||+|||+||||+++|+||+.+
T Consensus 264 ~~rydl~~vGr~~ln~kl~l~~~~~~~~~~~~~~l~~~di~~mi~~Ll~l~~G~~~~~~DD~DhlgNkRv~~~GeLl~~~ 343 (1119)
T 2a6h_C 264 PRRYDLGEAGRYKAEEKLGIRLSGRTLARFEDGEFKDEVFLPTLRYLFALTAGVPGHEVDDIDHLGNRRIRTVGELMTDQ 343 (1119)
T ss_dssp SCCSCTTTSSHHHHHTTSCSCCSTTTTCCCSSSCCCCTTHHHHHHHHHHHHTSCSSCCCCCTTSTTTEEEECHHHHHHHH
T ss_pred cccccchhcchhhhhhhhccCCccccccccccccccHHHHHHHHHHHHHhhcCCCCCCCcCcchhhceEehhhhHHHHHH
Confidence 4555421 0 11 1347899999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHhcCCCcchHHHHHHHhcccCcccccccccccccceEEEccc
Q 001179 332 LKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAER 411 (1131)
Q Consensus 332 f~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~It~~i~~~~sTGnw~~~~~~~~~q~~GvsqvleR 411 (1131)
|+..|+++.+.+++.+++. . .+.+. ++.++ ++++||++|++||+|||| ||+|+|
T Consensus 344 fr~~l~r~~~~i~~~~~~~--~-~~~~~------~~~~i---~~~~It~~lk~ff~tg~l--------------SQ~Ldq 397 (1119)
T 2a6h_C 344 FRVGLARLARGVRERMLMG--S-EDSLT------PAKLV---NSRPLEAAIREFFSRSQL--------------SQFKDE 397 (1119)
T ss_dssp HHHHHHHHHHHHHHHHHHS--C-SSCCS------STTTC---CSHHHHHHHHHHHHTCSS--------------EEECCC
T ss_pred HHHHHHHHHHHHHHHhhhh--c-ccccc------hHHhh---ccchhHHHHHHHhhccCc--------------cccccc
Confidence 9998777776666666432 1 11222 12233 345899999999999864 678999
Q ss_pred cchHHHhhhccccc---cCCccccccccccccccCCcccccccCCCCCCccccccccccceEEEeeccCCCCcccccchh
Q 001179 412 LNFLRFISFFRAVH---RGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKM 488 (1131)
Q Consensus 412 ln~~~~lSh~Rrv~---rg~~~~~~K~t~~R~Lhps~wGfICPveTPEG~~CGLvk~LA~~a~It~~~~~~~~~~~~~~~ 488 (1131)
+||+|+|||+||++ ||++++++|+++||+|||||||||||+|||||+|||||||||++|+|+
T Consensus 398 ~N~ls~LsH~RRisslgpggl~re~k~~~vRdlHpShwGriCPiETPEG~ncGLVknLAl~a~I~--------------- 462 (1119)
T 2a6h_C 398 TNPLSSLRHKRRISALGPGGLTRERAGFDVRDVHRTHYGRICPVETPEGANIGLITSLAAYARVD--------------- 462 (1119)
T ss_dssp SSTHHHHHHHHEEESSSSSSSCCSSCCHHHHSCCGGGTTTBCSSCSCSSSSCSSEEEBCSSCEEC---------------
T ss_pred cchHhhhhhhheecccCCCccccccccCcccccCHhhCcccCCCcCCCCCcccchhhhhhheeec---------------
Confidence 99999999999995 788999999999999999999999999999999999999999999998
Q ss_pred hhHHHHHHHhcCceecCcccccCCCCCceEEEECCEEEeeecCchHHHHHHHHHHHHhhcCCCCCCCceEEEEeCCCCCC
Q 001179 489 RTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGA 568 (1131)
Q Consensus 489 ~~~i~~~L~~lG~~~~~~~~~~~~~~~~~~V~lnG~~iG~~~~~~~~~~~~~lr~~r~~~~~~i~~~~ei~~v~~~~~~~ 568 (1131)
++|+.+. + +.+++||+|.+.+..-.+ ..... . .+..
T Consensus 463 ---------~~G~~e~-p----------~~~V~nG~v~~~i~yl~a---------~ee~~-------~---~i~~----- 498 (1119)
T 2a6h_C 463 ---------ELGFIRT-P----------YRRVVGGVVTDEVVYMTA---------TEEDR-------Y---TIAQ----- 498 (1119)
T ss_dssp ---------SSSCEEE-E----------EEEEETTEEEEEEEEECH---------HHHHH-------S---CEEC-----
T ss_pred ---------ccCcccC-C----------cEEEECCEEeeeeEEeCh---------hcccc-------e---EEec-----
Confidence 3566542 1 444469998654421111 00000 0 1111
Q ss_pred CCeEEEEcCCCcceeeEEEecCCCCCCcceeeecccceeeeeeecCCCCCCCCCCCCceeEEeecCCCcccceeccccCC
Q 001179 569 YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYS 648 (1131)
Q Consensus 569 ~~~i~i~td~GRl~RPv~~~~~~~~~~g~iE~i~~~Eq~~~~Ia~~~~~~~~~~~~~~~th~EI~P~~ilsv~AslIPF~ 648 (1131)
..+.+ |.||++||++.++.. .|+ +.+.+++ +|||||+|++|||++||+|||+
T Consensus 499 -~~~~l--~~gr~~r~~i~~r~~------~e~----------~~~~~~~---------~~~~ei~P~~ilsv~aslIPF~ 550 (1119)
T 2a6h_C 499 -ANTPL--EGNRIAAERVVARRK------GEP----------VIVSPEE---------VEFMDVSPKQVFSVNTNLIPFL 550 (1119)
T ss_dssp -TTSCB--SSSBBCCSSEEEESS------SSE----------EEECTTT---------CCEEECCTTTTSCHHHHTCTTG
T ss_pred -Cceee--cCCccccCceeEEec------cce----------eeechhH---------eEEEEeccccccccccccCCCc
Confidence 11222 459999999988754 122 1233322 7999999999999999999999
Q ss_pred CCCCCcccccccccccccccccc-----------------------------------ceEEEecc---cceeee-----
Q 001179 649 DHNQSPRNMYQCQMAKQTMGFSV-----------------------------------QALKFRAD---QKLYHL----- 685 (1131)
Q Consensus 649 ~HNqspRn~yqc~M~KQAiG~~~-----------------------------------~n~~~R~D---~~~y~L----- 685 (1131)
||||||||||||||+|||||+.. +++..|.| ++.|.|
T Consensus 551 ehn~s~R~lmgsnM~kQAv~l~~~~~p~vgTg~e~~~a~ds~~~~~a~~~G~v~~vd~~~i~ir~~~~~~~~y~L~~~~r 630 (1119)
T 2a6h_C 551 EHDDANRALMGSNMQTQAVPLIRAQAPVVMTGLEERVVRDSLAALYAEEDGEVAKVDGNRIVVRYEDGRLVEYPLRRFYR 630 (1119)
T ss_dssp GGBCHHHHHHHHHHHTTBCCBSSCCCCSEECSCHHHHHHHTTCSEECSSSEEEEEECSSBEEEEETTTEEECCBCCCSEE
T ss_pred ccCCCcccccccccccccccccccCCCeeeccccceeeeccCceeEeccCCEEEEecCceEEEEccCCcceeEEeecccc
Confidence 99999999999999999998754 35667774 467877
Q ss_pred -----cCCCcceeecCccc----------ccCcccCCCCcceEEEEEeccCCCCCceEEeeccccccCceeeeEEEEEEE
Q 001179 686 -----QTPQTPIVRTNTYT----------KYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETI 750 (1131)
Q Consensus 686 -----~ypQ~PLV~t~~~~----------~~~~~~~~~G~N~iVAv~~y~Gyn~EDaiiink~s~~rG~~~~~~y~~~~~ 750 (1131)
.|||+|||+++.+. ...++|+|+|+|++||||||+||||||||||||++++||+|+|.+++.|++
T Consensus 631 snq~t~~~QkPiV~~g~~v~~g~~ladg~~~~~gel~lG~N~lVA~m~~~GYN~EDAiiine~~v~rg~~tSihi~~~e~ 710 (1119)
T 2a6h_C 631 SNQGTALDQRPRVVVGQRVRKGDLLADGPASENGFLALGQNVLVAIMPFDGYNFEDAIVISEELLKRDFYTSIHIERYEI 710 (1119)
T ss_dssp CTTSCEECCEECCCSSCCBCTTCEEEECTTBSSSSBCCSEEEEEECSCCSSTTSSSEEEEETHHHHTTCSEEEEEEEEEE
T ss_pred ccccccccccceEeeCceeeccceeccccccCCCcccCceeEEEEEecccCCcchhhhhhhhhHHhcCCceEEEEEEEEe
Confidence 68999999999752 245799999999999999999999999999999999999999999999998
Q ss_pred EecccCCCccccccccccCCCChhhhcccCCCCCcccCcEEcCCCCeeEEeecCC---------------------CcEE
Q 001179 751 DLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTT---------------------NSWR 809 (1131)
Q Consensus 751 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~Ld~dGi~~~G~~v~~gdil~~~~~~~~---------------------~~~~ 809 (1131)
+..+.+...+.++. ..|+.....+++||+||||++|+.|++||||+||++|+. .++.
T Consensus 711 ~~r~~~~g~eeit~--~ip~~~~~~~~~LD~dGiv~iG~~V~~gDiLvgK~tP~~~~~~~~ee~ll~aifg~k~~~~rd~ 788 (1119)
T 2a6h_C 711 EARDTKLGPERITR--DIPHLSEAALRDLDEEGVVRIGAEVKPGDILVGRTSFKGESEPTPEERLLRSIFGEKARDVKDT 788 (1119)
T ss_dssp EEECCTTCCCBCCS--CCSSSCSGGGSSCCSSSBCCTTCBCCTTSEEECCEEESSSSSCCHHHHHHHHHHHSCCCCEEEC
T ss_pred eeeecCCCceeeec--cCCCcchhhhhccCCCcccCCCCEECCCCEEEEEecCCccccCChhhhhhhhhhccccccccee
Confidence 87665433222221 256666677899999999999999999999999988652 2466
Q ss_pred eeecCCCcceEEEEEEEeccCC-CCC-----CeEEEEEEeeecCCCCCcccccccCCcceeeeeecCCCCCccCCCCCcc
Q 001179 810 TNSRKGSESVFVDYVAVDMKNS-KNL-----PQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRP 883 (1131)
Q Consensus 810 ~~~~~~~e~g~Vd~v~~~~~~~-~~~-----~~~~~i~~r~~R~p~iGDKf~sRHGqKGvvs~i~~~~dmPf~~~~G~~p 883 (1131)
|++++++|.|+|++|.++.+++ |+. .+.|+|++|+.|+|+||||||||||||||||+|||+|||||+ +||++|
T Consensus 789 Sl~~~~~e~G~V~~V~~~~~~~~g~~l~~~~~~~vkV~i~~~R~~~vGDKfasRHGqKGVis~i~p~eDMPf~-~dG~~p 867 (1119)
T 2a6h_C 789 SLRVPPGEGGIVVRTVRLRRGDPGVELKPGVREVVRVYVAQKRKLQVGDKLANRHGNKGVVAKILPVEDMPHL-PDGTPV 867 (1119)
T ss_dssp CEECCSSCCCEEEEEEEECSSCSSCCCCTTEEEEEEEEEEEEEECCTTCEEECTTSCEEEEEEEECTTTSCBC-SSSCBC
T ss_pred eEEccCCccEEEEEEEEEccCCCCcccCCCcceEEEEEEcccCCcccCchhhhccCCCceEEeeeccCCCccc-cCCCCc
Confidence 9999999999999999998765 532 278999999999999999999999999999999999999999 999999
Q ss_pred cEEeCCCCCCCccchhHhHHHHHhhhccccCceecccc-ccccccccCCCCCCCCchhhHHHHHHHHHHC----------
Q 001179 884 DLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATP-FANSVKKTNGDTGTDESKSLVDELGEMLRTC---------- 952 (1131)
Q Consensus 884 DiIiNPh~~PSRMtiGql~E~~~gk~~~~~g~~~d~tp-f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---------- 952 (1131)
||||||||||||||||||+|+++||||++.|..+ +|| |++. .++++.+.|.++
T Consensus 868 DiIlNPhgvPSRMtiGqllE~~lG~a~~~~g~~~-atp~F~~~---------------~~~~i~~~L~~~~~~~~~~~~~ 931 (1119)
T 2a6h_C 868 DVILNPLGVPSRMNLGQILETHLGLAGYFLGQRY-ISPIFDGA---------------KEPEIKELLAQAFEVYFGKRKG 931 (1119)
T ss_dssp SEECCSTTTTTTTBTHHHHHHHHHHHHHHTTEEE-ECCTTTSC---------------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEeCCCcCccccchhhhhHHHhhhHHhhcCCce-EecccCCC---------------CHHHHHHHHHHhhhhccccccc
Confidence 9999999999999999999999999999999988 999 8765 467788888887
Q ss_pred -------------------CC--------------CCCCcEEEeeCCCCcEeeeeeeeeceeEEeeccccccceeeeecc
Q 001179 953 -------------------GF--------------NYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTG 999 (1131)
Q Consensus 953 -------------------g~--------------~~~G~e~~y~g~tG~~~~~~if~G~~yy~rL~Hmv~DK~~~R~~G 999 (1131)
|| +++|++.||||+||++|+++||+|++|||||+|||+||+||||+|
T Consensus 932 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~Gk~~lydG~TGe~~~~~I~vG~~Yy~kL~HmVdDKihaRs~G 1011 (1119)
T 2a6h_C 932 EGFGVDKREVEVLRRAEKLGLVTPGKTPEEQLKELFLQGKVVLYDGRTGEPIEGPIVVGQMFIMKLYHMVEDKMHARSTG 1011 (1119)
T ss_dssp HTCCCBHHHHHHHHHHHTTTSSCTTSCHHHHHHHHHHTTEECCBCSSSCCBCSSCEEEEEEEEEEBCCCTTTSCEEESSC
T ss_pred cccccchhhhhhhhhhhcCCcccccccchhhhcccCCCCceEeecCCCCCCccceEEEEhHHhhcchhhcccCcEEeecc
Confidence 99 999999999999999999999999999999999999999999999
Q ss_pred cccceeecccCcccccCceeeeehhhhHHhhhchHHHHHHhhccCCCccceeccccccccccccccccccccccccCCCC
Q 001179 1000 TMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLP 1079 (1131)
Q Consensus 1000 p~~~lTrQP~~Gr~~~GG~R~GEMErd~l~a~Gas~~l~erl~~~SD~~~~~vC~~Cg~~~~~~~~~~~~~~~~~~~~~~ 1079 (1131)
||+.|||||++||+|+|||||||||||||+|||||++|||||+.+||++.+++
T Consensus 1012 P~s~lTqQP~~Gra~~GGqRfGEME~~aL~a~GAa~~L~E~L~~kSD~~~gr~--------------------------- 1064 (1119)
T 2a6h_C 1012 PYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLQEMLTLKSDDIEGRN--------------------------- 1064 (1119)
T ss_dssp CBCSSSCSBCCCSSSCCCEEECHHHHHHHHHTTCSHHHHHHHTTTTTCHHHHH---------------------------
T ss_pred ccceeecCCCcccccCCCeeeehhehhhhhhccHHHHHHHHhccCCccccccc---------------------------
Confidence 99999999999999999999999999999999999999999999999975443
Q ss_pred CCCCCCCeeeccCcCCCCcceecchHhHHHHHHHHHhCCceeEEEeccC
Q 001179 1080 PARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGDG 1128 (1131)
Q Consensus 1080 ~~~~~~~~~C~~c~~~~~~~~v~iPy~~klL~~EL~sm~I~~~l~~~~~ 1128 (1131)
+.+|..|+ +.++.++.||||||||+|||+||||++++.+++.
T Consensus 1065 ------~~~~~~~~-~~~i~~~~iP~sfk~L~~EL~sl~i~~~l~~~~~ 1106 (1119)
T 2a6h_C 1065 ------AAYEAIIK-GEDVPEPSVPESFRVLVKELQALALDVQTLDEKD 1106 (1119)
T ss_dssp ------HHHHHHHT-TCCCCCCCCCHHHHHHHHHHHHSSCEECCBCSSS
T ss_pred ------ceEEEeec-CCccCccCCCHHHHHHHHHHHhCCCceEEEecCC
Confidence 13577774 7889999999999999999999999999988754
No 5
>3lu0_C DNA-directed RNA polymerase subunit beta; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_C*
Probab=100.00 E-value=2.5e-197 Score=1818.96 Aligned_cols=913 Identities=22% Similarity=0.312 Sum_probs=739.1
Q ss_pred cccchhhHHHHHHHHHHHHH------HhHHHHH-----------------------------HHHHHcCCeeeEEEEEEE
Q 001179 9 FEPLRELVRHHIESFDYMLD------EGLSEMF-----------------------------DHCRQAKISYTGKLMADV 53 (1131)
Q Consensus 9 ~~~~~~Lv~~hi~SFn~Fi~------~gl~~ii-----------------------------~ecR~r~~TYsa~l~v~v 53 (1131)
...+|+|+++|++||++|++ +||++++ .||++|++||+|||+|++
T Consensus 21 ~~~~P~Ll~iQ~~Sf~~Fl~~~~r~~~GL~evf~~~fPI~d~~~~~~Lef~~y~l~~Pk~~~~Ec~~r~lTYsapL~v~~ 100 (1342)
T 3lu0_C 21 VLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKL 100 (1342)
T ss_dssp SSCCCCGGGTTHHHHHHHSCSSSCSCSTTHHHHTTTSSCEETTTTEECCEEEECCCCCSCCSSTTTSSCCCCCCCCBEEE
T ss_pred CCCCCCHHHHHHHHHHHHHcCCccccchHHHHHHhcCCEECCCCCEEEEEeeEEeCCCCCCHHHHHhcCCCcccceEEEE
Confidence 44699999999999999997 8999999 999999999999999999
Q ss_pred EEEEecC------CCceEEEEEeecccceeeccCcccCCCCChHHHHhhccccccCCcEEEEcCceeEEEEEEeccCCce
Q 001179 54 EFQYLDA------GSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYP 127 (1131)
Q Consensus 54 ~~~~~~~------~~~~~~~~v~iG~iPIMvkS~~C~L~~ls~~el~~~gE~~~D~GGYFIING~EKVIr~qi~~~~N~~ 127 (1131)
+++..+. .+++++++|++|+||+|+. +|||||||+||||++|++++|+..
T Consensus 101 rL~~~~~d~~~~~~~eikeq~Vy~GdiPLMT~------------------------~GtFIING~ERVIVsQl~RSPGVy 156 (1342)
T 3lu0_C 101 RLVIYEREAPEGTVKDIKEQEVYMGEIPLMTD------------------------NGTFVINGTERVIVSQLHRSPGVF 156 (1342)
T ss_dssp CCEECCCSSCCCCCCCCCBCCCBCCCCCCCCS------------------------SSCEESSSSEEECCEEEECCSSCC
T ss_pred EEEEeccccccccccceEEEEEEEecCceECC------------------------CcEEEEcCceEEEEEeecccCcee
Confidence 9986521 2456688999999999998 999999999999999999999954
Q ss_pred EEEEecccc-CCCcceeeEEEEEeeeecCCCceEEEEEEEeCCeEEEEEEEecccccccHhhHHHhccCCCHHHHHHhhc
Q 001179 128 MSMVRSSFR-DRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLT 206 (1131)
Q Consensus 128 ~~~~r~s~~-~r~~~~t~~~i~iRs~~~~~~s~~~~l~~~~~g~~~l~~~~~k~~~~IPi~ilLkALg~~sD~eI~~~I~ 206 (1131)
|...+.+.+ +.+..|++..|+.|+. |+.++++.++.+|++|..+| +||+++||||||+ +++||++.+.
T Consensus 157 f~~~~~k~~~~gk~lysa~IIP~RGs-------Wlefe~D~kd~l~vrIdr~r---Kipvt~lLrALG~-~~~~Il~~f~ 225 (1342)
T 3lu0_C 157 FDSDKGKTHSSGKVLYNARIIPYRGS-------WLDFEFDPKDNLFVRIDRRR---KLPATIILRALNY-TTEQILDLFF 225 (1342)
T ss_dssp CCSCCSCSSSCCCSCCEEEECCSSSC-------CEEEEEETTTEEEEEESSCS---CEETTHHHHTTTC-CHHHHHTTTS
T ss_pred EeccccccCCCCceEEEEEEecCCCc-------cEEEEEcCCCeEEEEecCCC---ceeeehhHhHhCC-CHHHHHHHhc
Confidence 432222222 3446799999998875 99999999999999998765 7999999999998 6789998885
Q ss_pred cc--cc------------hhhh------ccc--C----------------------------------------C-----
Q 001179 207 CC--YD------------EKYK------KEK--G----------------------------------------A----- 219 (1131)
Q Consensus 207 ~~--~~------------~~~~------~~~--~----------------------------------------~----- 219 (1131)
.. +. +... +.. + +
T Consensus 226 ~~~~~~~~~~~~~~~~~~e~~~g~~~~~di~~~g~vi~~~g~~it~~~~~~l~~~g~~~i~v~~~~l~g~~la~divd~~ 305 (1342)
T 3lu0_C 226 EKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDES 305 (1342)
T ss_dssp CEEEECEETTEEEECCCGGGGTTEECCSCEEETTEEEECSSSEECSHHHHHHHHTTCCCEECCSHHHHTSEECSCEECTT
T ss_pred ccceEEeccCceeeecchhhhcccccccchhccccceecccccccHHHHHHHHhccCcccccCHHHhhcchhhheeeecC
Confidence 21 00 0000 000 0 0
Q ss_pred -------CCChhHHHHHHHHHH----------------------HHHhccccCHHHHHHHHhhcccccccCCCCccHHHH
Q 001179 220 -------VGSPLVSERVKIILA----------------------EVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAV 270 (1131)
Q Consensus 220 -------~~~~~~~~~~~~lL~----------------------~~~~~~i~t~~~AL~yIG~~~r~~~~~~~~~~~~e~ 270 (1131)
.++..-.+.+..+.+ .+..+.+.|+++||.+|++++|+. .....+.
T Consensus 306 tge~~~~~~~~i~~~~l~~l~~~~i~~~~~l~~~~~~~~~~i~~tl~~d~~~~~~eAl~~iyr~lrpg-----ep~t~e~ 380 (1342)
T 3lu0_C 306 TGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPG-----EPPTREA 380 (1342)
T ss_dssp TCCEEECSSCBCCTTHHHHHHHHTCSCEEEECCCSSSSCCSGGGTTTTCCCCSSHHHHHHHHHHHSCS-----SCCCTTH
T ss_pred CCeEEecCCcccCHHHHHHHHHcCCcEEEEEecccccccHHHHHHHhhccCCCHHHHHHHHHHhcCCC-----CCCCHHH
Confidence 000000011222211 112234678999999999999843 2223455
Q ss_pred HHHHHHhhhc-------ccCCC---------------chhhHHHHHHHHHHHHhhcCCCCCCCCcccccccEeccchhhH
Q 001179 271 AETVIRDYIF-------VHLND---------------NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328 (1131)
Q Consensus 271 g~~~L~~~ll-------~Hl~~---------------~~~K~~~L~~MvrkLl~l~~G~~~~DD~D~l~NkRv~l~G~Ll 328 (1131)
|+.+|++.|| +|+|. ...+..+|+.++++|+.+..|....||+|||+||||+++|+||
T Consensus 381 a~~l~~~lFf~~~rYdL~~VGR~k~N~kL~l~~~~~~~~Lt~~DIi~~i~~Li~l~~g~~~~DDiDHLgNrRvr~vGeLl 460 (1342)
T 3lu0_C 381 AESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMA 460 (1342)
T ss_dssp HHHHHHHHHSCTTTCCCTTTHHHHHHTTTTCSCCCCCSSCCTTHHHHHHHHHHHHHHTSSCCCCSSSTTTSEEECHHHHH
T ss_pred HHHHHHHhhcCcccccchhhhhHHHhhhcCCCcCccccEecHHHHHHHHHHHHHHhhCCCCCcchhhhhcchhchHHHHH
Confidence 5556555554 44441 1245667999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHhcCCCcchHHHHHHHhcccCcccccccccccccceEEE
Q 001179 329 TIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQ 408 (1131)
Q Consensus 329 ~~lf~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~It~~i~~~~sTGnw~~~~~~~~~q~~Gvsqv 408 (1131)
+.+|+..|.++.+.++..+... . ...+. ++.++ +++++|+++++||+ ++|+||+
T Consensus 461 ~~qfr~~l~r~~r~i~~~~~~~--~-~~~~~------~~~li---n~~~i~~~~k~ffg--------------~s~lSQ~ 514 (1342)
T 3lu0_C 461 ENQFRVGLVRVERAVKERLSLG--D-LDTLM------PQDMI---NAKPISAAVKEFFG--------------SSQLSQF 514 (1342)
T ss_dssp HHTHHHHHHHHHHHHTTHHHHC--C-SSCCS------STTTC---CSSTTHHHHTTTTT--------------TCSSCEE
T ss_pred HHHHHHHHHHHHHHHHHHHhhc--c-cccCC------HHHHh---ccchHHHHHHHHhC--------------cccccee
Confidence 9999997666666555555431 1 11111 22344 45689999999874 3799999
Q ss_pred ccccchHHHhhhccccc---cCCccccccccccccccCCcccccccCCCCCCccccccccccceEEEeeccCCCCccccc
Q 001179 409 AERLNFLRFISFFRAVH---RGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDF 485 (1131)
Q Consensus 409 leRln~~~~lSh~Rrv~---rg~~~~~~K~t~~R~Lhps~wGfICPveTPEG~~CGLvk~LA~~a~It~~~~~~~~~~~~ 485 (1131)
++|.|+++.|||+||++ +|++.++++.++||+|||||||+|||+|||||+|||||+|||++|+|+
T Consensus 515 lDqtNpLseltHkRRlsalGPGGLsr~~a~fevRdvH~thyGRiCPiETPEG~niGLI~sLA~~a~in------------ 582 (1342)
T 3lu0_C 515 MVQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTN------------ 582 (1342)
T ss_dssp CCCSSHHHHHHHHSBEESCCSTTSCCSSCCTTTSSCCTTCSSSSCTTCCCSSSCSSSCCBCCSSCCBC------------
T ss_pred ecCCCHHHHHhhhhcccccCCCCccccccCceecccCcccccccccccCCCCCceeeecchhheEEec------------
Confidence 99999999999999999 788999999999999999999999999999999999999999999997
Q ss_pred chhhhHHHHHHHhcCceecCcccccCCCCCceEEEECCEEEeeecCchHHHHHHHHHHHHhhcCCCCCCCceEEEEeCCC
Q 001179 486 SKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565 (1131)
Q Consensus 486 ~~~~~~i~~~L~~lG~~~~~~~~~~~~~~~~~~V~lnG~~iG~~~~~~~~~~~~~lr~~r~~~~~~i~~~~ei~~v~~~~ 565 (1131)
++|++.+ | |.++.||++-..+. ++ ....|-.|+-+..
T Consensus 583 ------------~~Gfiet-P----------yr~V~~g~v~~~i~------------yL--------sA~eE~~~~IAqa 619 (1342)
T 3lu0_C 583 ------------EYGFLET-P----------YRKVTDGVVTDEIH------------YL--------SAIEEGNYVIAQA 619 (1342)
T ss_dssp ------------SSSCBCE-E----------EEEEETTEEEEEEE------------EE--------CTTTGGGSCBCCS
T ss_pred ------------cCCcccC-C----------cEEEECCEEcCcee------------eC--------ChHHhcCceEEec
Confidence 5788754 2 77889998743321 11 1112211222222
Q ss_pred CCCCCeEEEEcCCCcceeeEEEecCCCCCCcceeeecccceeeeeeecCCCCCCCCCCCCceeEEeecCCCcccceeccc
Q 001179 566 GGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLT 645 (1131)
Q Consensus 566 ~~~~~~i~i~td~GRl~RPv~~~~~~~~~~g~iE~i~~~Eq~~~~Ia~~~~~~~~~~~~~~~th~EI~P~~ilsv~AslI 645 (1131)
+. -.++.|++.++++.++.. |. +..++ +++ ++||||+|.+|+||+||||
T Consensus 620 n~------~l~~~g~~~~~~v~~R~~----~e----------~~~~~--~~~---------v~~~dvsP~qivSvaaslI 668 (1342)
T 3lu0_C 620 NS------NLDEEGHFVEDLVTCRSK----GE----------SSLFS--RDQ---------VDYMDVSTQQVVSVGASLI 668 (1342)
T ss_dssp SS------CCSSSSCCSCSSEEEECS----SC----------EEEEC--TTT---------CCEEESCTTTTSCHHHHSC
T ss_pred Cc------ccCCCCcccCCeEEEEec----Cc----------eEEeC--hHH---------CeeEecCHHHhcchhhccC
Confidence 11 136789999999887643 12 22222 222 7999999999999999999
Q ss_pred cCCCCCCCccccccccccccccccc-----------------------------------cceEEEeccc----------
Q 001179 646 PYSDHNQSPRNMYQCQMAKQTMGFS-----------------------------------VQALKFRADQ---------- 680 (1131)
Q Consensus 646 PF~~HNqspRn~yqc~M~KQAiG~~-----------------------------------~~n~~~R~D~---------- 680 (1131)
||++||||||++|||||+||||++. +.++..|.|.
T Consensus 669 PFLEhdDAnRaLMGsNMQRQAVPLl~~e~p~VgTG~E~~~a~dsg~~i~a~~~G~v~~vda~~I~Ir~~~~~~~~~~~~~ 748 (1342)
T 3lu0_C 669 PFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGI 748 (1342)
T ss_dssp TTSTTBCHHHHHHHHHTTTTBCCCSSCCCCSSBCSCHHHHHHHTTTSCBCSSCBEECCCCSSBCCEEECSSSSSSSCCEE
T ss_pred CCcccCCccccchhhhccccccccccCCCCeEecccchheeecCCceEEecCCCEEEEecCCeEEEEeCCCccccccCcc
Confidence 9999999999999999999999875 5677778774
Q ss_pred ceeee----------cCCCcceeecCccccc----------CcccCCCCcceEEEEEeccCCCCCceEEeeccccccCce
Q 001179 681 KLYHL----------QTPQTPIVRTNTYTKY----------GIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMC 740 (1131)
Q Consensus 681 ~~y~L----------~ypQ~PLV~t~~~~~~----------~~~~~~~G~N~iVAv~~y~Gyn~EDaiiink~s~~rG~~ 740 (1131)
..|.| .|+|+|+|+++..... ..+|+|+|+|++||+|||.|||+|||||||++++++++|
T Consensus 749 ~~y~L~kf~RSNq~Tc~~QrPiV~~G~~V~~GdilADG~st~~GElaLG~N~lVAfMpW~GYNfEDAIlISErlV~eD~f 828 (1342)
T 3lu0_C 749 DIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRF 828 (1342)
T ss_dssp ECCBCCCSCBCSSSCBCCCCBCCCSSCCBCTTCBCBCCSSCSSSSCCCSEECCEECCCCSSTTSSSEEEECTHHHHTTTS
T ss_pred eEEEecccccccccccccccceeecCCEEecCcEecccccccCCeeecccccEEEEecccCcccccchhhhhhhhhcCCc
Confidence 34554 4799999999976443 469999999999999999999999999999999999999
Q ss_pred eeeEEEEEEEEecccCCCccccccccccCCCChhhhcccCCCCCcccCcEEcCCCCeeEEeecCC---------------
Q 001179 741 HGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTT--------------- 805 (1131)
Q Consensus 741 ~~~~y~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~Ld~dGi~~~G~~v~~gdil~~~~~~~~--------------- 805 (1131)
+|.|...|.++..+.+.+.+.++. .+|+.++..+++||++|||++|+.|++|||||||++|+.
T Consensus 829 TSIHIee~e~~aRdtklG~EeiTr--dIPnv~e~al~~LDe~GIv~iGa~V~~GDILVGKvtPkge~~~tpEekLLraIF 906 (1342)
T 3lu0_C 829 TTIHIQELACVSRDTKLGPEEITA--DIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIF 906 (1342)
T ss_dssp CEEEEEEEEEECCEETTEECCCCS--CCSSCCHHHHHSBCSSSCBCTTCCCCTTCEEECCCCBCCTTTCCHHHHHGGGTS
T ss_pred eeEEEEEEeeeeeecCCCCceecc--cCCCCChHHHhcCCCCCCeecCcEECCCCEEEeccCCCCCCcCChHHHHHHHHh
Confidence 999999999998877755444432 368888889999999999999999999999999988763
Q ss_pred ------CcEEeeecCCCcceEEEEEEEeccC-------------------------------------------------
Q 001179 806 ------NSWRTNSRKGSESVFVDYVAVDMKN------------------------------------------------- 830 (1131)
Q Consensus 806 ------~~~~~~~~~~~e~g~Vd~v~~~~~~------------------------------------------------- 830 (1131)
.++.|+++++++.|+|..|.++..+
T Consensus 907 Geka~~vkDtSL~vp~g~~G~Vidv~~f~r~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~g~t~ 986 (1342)
T 3lu0_C 907 GEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEA 986 (1342)
T ss_dssp CSSSSSBCCCCEECCTTCCCEEEECCCCCCGGGCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCH
T ss_pred cCcccccccCcEecCCCCcEEEEEEEEEecccccchhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCCCH
Confidence 2466999999999999999888642
Q ss_pred ---------------------------------------------------CC-----CCCeEEEEEEeeecCCCCCccc
Q 001179 831 ---------------------------------------------------SK-----NLPQKANIRFRHTRNPIIGDKF 854 (1131)
Q Consensus 831 ---------------------------------------------------~~-----~~~~~~~i~~r~~R~p~iGDKf 854 (1131)
.| ...+.|+|++|+.|+|++||||
T Consensus 987 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~gd~l~~gv~k~VkV~ia~kRk~qvGDK~ 1066 (1342)
T 3lu0_C 987 EKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKM 1066 (1342)
T ss_dssp HHHTTSCGGGTTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSSSSCEEEEEEEEEECCCTTCEE
T ss_pred HHHhhCCHHHhhccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccCcCCceEEEEEEEEeccCCCCCCc
Confidence 01 1247899999999999999999
Q ss_pred ccccCCcceeeeeecCCCCCccCCCCCcccEEeCCCCCCCccchhHhHHHHHhhhccccCceec----------------
Q 001179 855 SSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMD---------------- 918 (1131)
Q Consensus 855 ~sRHGqKGvvs~i~~~~dmPf~~~~G~~pDiIiNPh~~PSRMtiGql~E~~~gk~~~~~g~~~d---------------- 918 (1131)
|||||||||||+|||+|||||+ +||++||||+||||||||||||||+|+++||||+..|..++
T Consensus 1067 AgRHGnKGVis~I~p~EDMPf~-~dG~~pDIIlNP~gvPSRMnIGqilE~~lG~aa~~~G~~i~~~~~~~~~~~~~r~~~ 1145 (1342)
T 3lu0_C 1067 AGRHGNKGVISKINPIEDMPYD-ENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFI 1145 (1342)
T ss_dssp ECSSSCCEEECCCCCTTTSCEE-TTEEECSEECCGGGTTSSCBTHHHHHHHHHHGGGTSSTHHHHTTTHHHHCTTTHHHH
T ss_pred ccccCCCceEEEEecccCCCCC-CCCCCCcEEeCCCCCCCccchhhhhHHhhhHHHHhcCchHHHHHHhhhhhHHHHHHH
Confidence 9999999999999999999999 99999999999999999999999999999999999886432
Q ss_pred -------------------------------------cccccccccccCCCCCCCCchhhHHHHHHHHHHCCCCCCCcEE
Q 001179 919 -------------------------------------ATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEV 961 (1131)
Q Consensus 919 -------------------------------------~tpf~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~e~ 961 (1131)
+||+... ...+++.+.|.++||+++|++.
T Consensus 1146 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~aTPvFdg--------------a~~~~i~~~L~~aG~~~~Gk~~ 1211 (1342)
T 3lu0_C 1146 QRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDG--------------AKEAEIKELLKLGDLPTSGQIR 1211 (1342)
T ss_dssp HHHTTTTCCCSSSCCTTTSCHHHHHHTTTTTSSCTTCBCCSSSS--------------CCHHHHHHHTSSSSSCSSSCBC
T ss_pred HHHhhcccccchhhhhcccchHHHHHHhhhhccCCcccCCCCCC--------------CCHHHHHHHHHHcCCCCCCCEE
Confidence 4442221 1478999999999999999999
Q ss_pred EeeCCCCcEeeeeeeeeceeEEeeccccccceeeeecccccceeecccCcccccCceeeeehhhhHHhhhchHHHHHHhh
Q 001179 962 LYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRL 1041 (1131)
Q Consensus 962 ~y~g~tG~~~~~~if~G~~yy~rL~Hmv~DK~~~R~~Gp~~~lTrQP~~Gr~~~GG~R~GEMErd~l~a~Gas~~l~erl 1041 (1131)
||||+||++|+++||+|++|||||+|||+||+||||+|||+++||||++||+|+|||||||||||||+|||||++|||||
T Consensus 1212 LydGrTGe~f~~~V~vG~~YylKL~HmVdDKiHaRs~GPysllTqQPl~Gkaq~GGqRfGEMEvwaL~a~GAa~~LqE~L 1291 (1342)
T 3lu0_C 1212 LYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEML 1291 (1342)
T ss_dssp CBCSSSCSBCSSCBCEECCEEEEBCCCGGGSCCCBSSCCBCSSSCCBCCCSSSCCCCCCCHHHHHHHHHSSCSHHHHHHT
T ss_pred EEcCCCCCCcccceeeeehhHhhhhhccccceEEeccCCCcccccCCCCccccCCCeeeehHHHHHHHhccHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccceeccccccccccccccccccccccccCCCCCCCCCCCeeeccCcCCCCcceecchHhHHHHHHHHHhCCcee
Q 001179 1042 HTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKI 1121 (1131)
Q Consensus 1042 ~~~SD~~~~~vC~~Cg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~~~~~~v~iPy~~klL~~EL~sm~I~~ 1121 (1131)
+.+||++ |..|. .+|..| ++.++..+.||||||+|++||+||||++
T Consensus 1292 t~kSDdv----~gr~~-----------------------------~y~~i~-~g~~~~~~~iPesfkvL~~EL~sl~l~v 1337 (1342)
T 3lu0_C 1292 TVKSDDV----NGRTK-----------------------------MYKNIV-DGNHQMEPGMPESFNVLLKEIRSLGINI 1337 (1342)
T ss_dssp TTSSSCH----HHHHH-----------------------------HHHHHT-TTSCCCCCCCCHHHHHHHHHHHTSSCCE
T ss_pred hcCCCcc----ccchh-----------------------------hhhhhc-CCCCCCcCCCCHHHHHHHHHHHhCCCCe
Confidence 9999975 32222 245555 4788999999999999999999999999
Q ss_pred EEE
Q 001179 1122 TLQ 1124 (1131)
Q Consensus 1122 ~l~ 1124 (1131)
++.
T Consensus 1338 ~l~ 1340 (1342)
T 3lu0_C 1338 ELE 1340 (1342)
T ss_dssp ECC
T ss_pred Eec
Confidence 874
No 6
>3mlq_A DNA-directed RNA polymerase subunit beta; tudor, transferase-transcription complex; 2.91A {Thermus aquaticus}
Probab=99.87 E-value=4.2e-23 Score=214.00 Aligned_cols=88 Identities=26% Similarity=0.470 Sum_probs=80.5
Q ss_pred hhHHHHHHHHHHHH----------HHhHHHHH--------------------------------HHHHHcCCeeeEEEEE
Q 001179 14 ELVRHHIESFDYML----------DEGLSEMF--------------------------------DHCRQAKISYTGKLMA 51 (1131)
Q Consensus 14 ~Lv~~hi~SFn~Fi----------~~gl~~ii--------------------------------~ecR~r~~TYsa~l~v 51 (1131)
+|+++|++|||||+ ++||++++ +|||+|++||+|||+|
T Consensus 2 ~Lv~~Q~~SF~~Flq~~~~~~~r~~~GL~ei~~~~~pI~~~~~~~~~~~L~f~~~~l~~P~~~p~Ecr~r~lTYsapl~v 81 (188)
T 3mlq_A 2 PLTEIQVESYKKALQADVPPEKRENVGIQAAFKETFPIEEGDKGKGGLVLDFLEYRIGDPPFSQDECREKDLTYQAPLYA 81 (188)
T ss_dssp CCHHHHHHHHHHHHCTTSCGGGCCSCHHHHHHHHHCCEEECCSSSCCEEEEEEEEEECCCSSCHHHHHHTTCCCEEEEEE
T ss_pred CHHHHHHHHHHHHHhCCcccccchhhcHHHHHHhcCCeeeccCCCCeEEEEEEEEEecCCCCCHHHHHhcCCCcceeEEE
Confidence 68999999999999 89999998 9999999999999999
Q ss_pred EEEEEEecCCCceEEEEEeecccceeeccCcccCCCCChHHHHhhccccccCCcEEEEcCceeEEEEEEeccCCc
Q 001179 52 DVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNY 126 (1131)
Q Consensus 52 ~v~~~~~~~~~~~~~~~v~iG~iPIMvkS~~C~L~~ls~~el~~~gE~~~D~GGYFIING~EKVIr~qi~~~~N~ 126 (1131)
+++++.. +++++++++|++|+||||+. ||||||||+||||++|+++..|.
T Consensus 82 ~v~l~~~-~~~~i~~~~v~iG~iPlMt~------------------------gGyFIING~ERVIVsQe~r~~ge 131 (188)
T 3mlq_A 82 RLQLIHK-DTGLIKEDEVFLGHLPLMTE------------------------DGSFIINGADRVIVSQGGRTVGE 131 (188)
T ss_dssp EEEEEET-TTCCEEEEEEEEEEEECCCT------------------------TSCEEETTEEEECCCCSSSCHHH
T ss_pred EEEEEEC-CCceEEEEEEEEcccCEECC------------------------CCEEEECCEEEEEEEeecccCCe
Confidence 9999764 34567788999999999994 99999999999999999888764
No 7
>3qqc_A DNA-directed RNA polymerase subunit B, DNA-direct polymerase subunit A', DNA-directed...; transcription, fusion protein, chimera protein, multiprotein; 3.30A {Pyrococcus furiosus}
Probab=99.13 E-value=2.4e-11 Score=141.87 Aligned_cols=64 Identities=31% Similarity=0.604 Sum_probs=56.3
Q ss_pred ccceeccccccccccccccccccccccccCCCCCCCCCCCeeeccCcCCCCcceecchHhHHHHHHHHHhCCceeEEEec
Q 001179 1047 YHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLG 1126 (1131)
Q Consensus 1047 ~~~~~vC~~Cg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~~~~~~v~iPy~~klL~~EL~sm~I~~~l~~~ 1126 (1131)
+++++||..||++++++ .++..++|+.|+++.++..|.||||||||+|||+||||.++|.++
T Consensus 2 k~~~~VC~~CG~~~~~~------------------~~~~~~~C~~C~~~~~i~~v~iPYa~KlL~qEL~smnI~~rl~~~ 63 (436)
T 3qqc_A 2 KTEVWVCENCGHIALED------------------KRRRRVYCPVCGEEERISKVEMSYAFKLLLDELKAMVIRPKLNLS 63 (436)
T ss_dssp CEEEEEETTTCCBCEEE------------------TTTTEEECTTTCCSSSEEEEEECHHHHHHHHHHHHTTBCCEEEEE
T ss_pred ceEEEEeCCCCceeeec------------------cccCccCCCCCCCCCeEEEEEcChHHHHHHHHHHhCCeeceeecc
Confidence 46789999999998864 234458999999999999999999999999999999999999998
Q ss_pred cC
Q 001179 1127 DG 1128 (1131)
Q Consensus 1127 ~~ 1128 (1131)
+.
T Consensus 64 d~ 65 (436)
T 3qqc_A 64 EG 65 (436)
T ss_dssp C-
T ss_pred cc
Confidence 64
No 8
>3lti_A DNA-directed RNA polymerase subunit beta; BBM2, nucleotidyltransferase, transcription, transferase; HET: MLY MSE; 1.60A {Escherichia coli} PDB: 3e7h_A
Probab=98.77 E-value=4.7e-08 Score=107.49 Aligned_cols=163 Identities=13% Similarity=0.078 Sum_probs=112.9
Q ss_pred CCcceeeEEEEEeeeecCCCceEEEEEEEeCCeEEEEEEEecccccccHhhHHHhccCCCHHHHHHhhccccc----h--
Q 001179 138 RREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYD----E-- 211 (1131)
Q Consensus 138 r~~~~t~~~i~iRs~~~~~~s~~~~l~~~~~g~~~l~~~~~k~~~~IPi~ilLkALg~~sD~eI~~~I~~~~~----~-- 211 (1131)
.+..|+...++.||. |+.+.++.++.+|+++..+| ++|+++||||||+ +++||++.+..... .
T Consensus 21 g~~~y~~~iIP~RGs-------Wlefe~d~~d~~~vrIdr~r---K~p~t~lLrAlG~-~~edIL~~Fy~~~~~~i~~~~ 89 (296)
T 3lti_A 21 GKVLYNARIIPYRGS-------WLDFEFDPKDNLFVRIDRRR---KLPATIILRALNY-TTEQILDLFFEKVIFEIRDNK 89 (296)
T ss_dssp --CCEEEEEECSBSC-------CEEEEECTTSCEEEEETTCC---CEETHHHHHHTTC-CHHHHHHHHCCEEEEEEETTE
T ss_pred CcEEEEEEEecCCCc-------eEEEEEcCCCeEEEEEcCcc---cchHHHHHHHcCC-ChHHHHHhcccceEEEEcCCc
Confidence 346799999999986 99999999999999998766 7999999999999 78899998842100 0
Q ss_pred --------hhhc------c------------------------------------------cCC------------CCCh
Q 001179 212 --------KYKK------E------------------------------------------KGA------------VGSP 223 (1131)
Q Consensus 212 --------~~~~------~------------------------------------------~~~------------~~~~ 223 (1131)
.... + ..+ .++.
T Consensus 90 ~~~~~~~~~~~g~~~~~di~~~g~v~~~~gk~it~r~~~~~~~~g~~~i~v~~~~l~g~~la~divd~~tGEvl~~a~~~ 169 (296)
T 3lti_A 90 LQMELVPERLRGETASFDIEANGXVYVEXGRRITARHIRQLEKDDVKLIEVPVEYIAGXVVAXDYIDESTGELICAANME 169 (296)
T ss_dssp EEEECCGGGGTTCBCSSCEEETTEEEECTTCBCCHHHHHHHHHTTCCEEECCHHHHHTSBBCSCEECTTTCCEEECTTCB
T ss_pred eEeecChhHhcCceeeeeeccCCceeeecccchhHHHHHHHHHcCCceeecCHHHhccceeccceecccccceeeccccc
Confidence 0000 0 000 0000
Q ss_pred hHHHHHH----------------------HHHHHHHhccccCHHHHHHHHhhcccccc---------------cCCCCcc
Q 001179 224 LVSERVK----------------------IILAEVQDLSLTTRLQCLQHIGEHFQPVI---------------DGLQSES 266 (1131)
Q Consensus 224 ~~~~~~~----------------------~lL~~~~~~~i~t~~~AL~yIG~~~r~~~---------------~~~~~~~ 266 (1131)
.-.+.++ .+...+.++...|+++|+..|++++|+.- +.|.+++
T Consensus 170 it~~~l~~l~~~gi~~i~~l~~~~~~~~~~i~~tL~~D~~~s~~eAl~eIYr~lRpgep~t~e~a~~l~~~lFF~~~RYD 249 (296)
T 3lti_A 170 LSLDLLAXLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYD 249 (296)
T ss_dssp CCHHHHHHHHHTTCCEEEEECCCSSSSCCHHHHHHHHCCCCSHHHHHHHHHHHHSTTSCCCHHHHHHHHHHHHSCTTTCB
T ss_pred cCHHHHHHHHhcCcceEEEEEeccccchHHHHHHHHhcCCCCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhhcCcCeec
Confidence 0011111 13344556678899999999999988531 2467888
Q ss_pred HHHHHHHHHHhhhcccCCCc--hhhHHHHHHHHHHHHhhcCCCCCCC
Q 001179 267 YYAVAETVIRDYIFVHLNDN--NDKFNLLIFMLQKLFSLVDHTSVSD 311 (1131)
Q Consensus 267 ~~e~g~~~L~~~ll~Hl~~~--~~K~~~L~~MvrkLl~l~~G~~~~D 311 (1131)
..++||..||+.|-..++.. ......++..+++|+.+.+|....|
T Consensus 250 Lg~VGR~KlNkKL~l~~~~~~~~Lt~eDIl~~ikyLI~L~~g~~~vD 296 (296)
T 3lti_A 250 LSAVGRMXFNRSLLREEIEGSGILSXDDIIDVMXXLIDIRNGXGEVD 296 (296)
T ss_dssp CHHHHHHHHHHHTTCSCSCCCSSCCHHHHHHHHHHHHHHHHTSSCCC
T ss_pred hhhhchhHhhhhhCcCCCCCccEecHHHHHHHHHHHHHhhcCCCCCC
Confidence 88999999998886666532 2334569999999999999987765
No 9
>3tbi_B DNA-directed RNA polymerase subunit beta; transcription accessory protein, transcription; 3.00A {Escherichia coli}
Probab=98.57 E-value=6.8e-08 Score=101.55 Aligned_cols=85 Identities=14% Similarity=0.015 Sum_probs=66.6
Q ss_pred EEEEEEEEecccCCCccccccccccCCCChhhhcccCCCCCcccCcEEcCCCCeeEEeecCC------------------
Q 001179 744 IYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTT------------------ 805 (1131)
Q Consensus 744 ~y~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~Ld~dGi~~~G~~v~~gdil~~~~~~~~------------------ 805 (1131)
|...|.++..+.+.+.+.++. ..|+.+...+++||+|||+++|+.|++||||+||++|+.
T Consensus 3 HIeeyei~~r~tk~G~EeIT~--dIPnv~e~~l~~LDe~GIV~iGs~V~~GDILVGKvTPk~~~~~tpEekLL~aIfg~k 80 (228)
T 3tbi_B 3 HIQELACVSRDTKLGPEEITA--DIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEK 80 (228)
T ss_dssp EEEEEEEEEEEETTEECEESS--CCSSCCHHHHHTBCTTSBBCTTCCCBTTCEEECEEEECCGGGCCHHHHHHHHHHCTT
T ss_pred cEEEEEEEEEEcCCCCeEEec--CCCCccHHHHhcCCCCCCeecCCEECCCCEEEeccCCCCCCCCChHHHHHHHHhCCc
Confidence 445566666555533332221 357888888999999999999999999999999988764
Q ss_pred ---CcEEeeecCCCcceEEEEEEEeccC
Q 001179 806 ---NSWRTNSRKGSESVFVDYVAVDMKN 830 (1131)
Q Consensus 806 ---~~~~~~~~~~~e~g~Vd~v~~~~~~ 830 (1131)
.++.|++.+.++.|+|+.|.++..+
T Consensus 81 ~~~vkDtSL~vp~G~~G~VidV~if~r~ 108 (228)
T 3tbi_B 81 ASDVKDSSLRVPNGVSGTVIDVQVFTRD 108 (228)
T ss_dssp SSCEEECCEECCSSCBEEEEEEEEEEBT
T ss_pred cccceeCcEecCCCCcEEEEEEEEEecC
Confidence 1467999999999999999999764
No 10
>3mlq_A DNA-directed RNA polymerase subunit beta; tudor, transferase-transcription complex; 2.91A {Thermus aquaticus}
Probab=91.15 E-value=0.22 Score=51.70 Aligned_cols=65 Identities=12% Similarity=0.148 Sum_probs=50.5
Q ss_pred ccccEeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHhcCCCcchHHHHHHHhcccCcc
Q 001179 316 LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLA 392 (1131)
Q Consensus 316 l~NkRv~l~G~Ll~~lf~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~It~~i~~~~sTGnw~ 392 (1131)
+-+|+.+++|+||+..++. .|.++++.+++++.. .. ++ ...++.++ +.++++..|+.||+|++++
T Consensus 121 IVsQe~r~~gell~~q~r~----gl~r~ek~~~e~~~~-~~---~~-~~~~~~l~---n~kp~~~~ik~ff~ss~Ls 185 (188)
T 3mlq_A 121 IVSQGGRTVGELMADQFRV----GLARLARGVRERMVM-GS---PD-TLTPAKLV---NSRPLEAALREFFSRSQLS 185 (188)
T ss_dssp CCCCSSSCHHHHHHHHHHH----HHHHHHHHHHHHHHH-SC---GG-GCCHHHHC---CCHHHHHHHHHHHHTCEEC
T ss_pred EEEeecccCCeeeEEehhh----HHHHHHHHHHhhhcc-cc---cc-ccCcccch---hhHHHHHHHHHhhcccccc
Confidence 4689999999999888876 677888899888876 22 11 22466677 3569999999999998874
No 11
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=39.53 E-value=7.6 Score=33.76 Aligned_cols=48 Identities=19% Similarity=0.305 Sum_probs=28.3
Q ss_pred cceeccccccccccccccccccccccccCCCCCCCCCCCeeeccCcCCCCcce------ecchHhHHHHHHHHH
Q 001179 1048 HVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGMET------VAMPYVFRYLAAELA 1115 (1131)
Q Consensus 1048 ~~~~vC~~Cg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~~~~~~------v~iPy~~klL~~EL~ 1115 (1131)
|.+..|+ ||.+.... ...++..|+ |+..-++.+ ++-.-...-+...|+
T Consensus 2 Y~vv~C~-C~~~~~~~------------------~~~kT~~C~-CG~~~~~~k~rif~~~~d~~eA~e~~~~lq 55 (71)
T 1gh9_A 2 YIIFRCD-CGRALYSR------------------EGAKTRKCV-CGRTVNVKDRRIFGRADDFEEASELVRKLQ 55 (71)
T ss_dssp EEEEEET-TSCCEEEE------------------TTCSEEEET-TTEEEECCSSSCBSCCSSHHHHHHHHHHHS
T ss_pred eEEEECC-CCCEEEEc------------------CCCcEEECC-CCCeeeeceEEEEEecCCHHHHHHHHHHHH
Confidence 4577899 99887654 233456898 986544433 333444444444443
No 12
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=28.41 E-value=24 Score=36.74 Aligned_cols=15 Identities=27% Similarity=0.724 Sum_probs=12.3
Q ss_pred Cccceeccccccccc
Q 001179 1046 DYHVADVCSLCGSVL 1060 (1131)
Q Consensus 1046 D~~~~~vC~~Cg~~~ 1060 (1131)
|....|+|..||-+.
T Consensus 167 ~~~~~~~C~~CG~i~ 181 (202)
T 1yuz_A 167 DDDKFHLCPICGYIH 181 (202)
T ss_dssp CSCCEEECSSSCCEE
T ss_pred CCCcEEEECCCCCEE
Confidence 666899999999663
Done!