RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 001179
(1131 letters)
>d1twfb_ e.29.1.1 (B:) RBP2 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 1207
Score = 624 bits (1609), Expect = 0.0
Identities = 307/1247 (24%), Positives = 481/1247 (38%), Gaps = 201/1247 (16%)
Query: 15 LVRHHIESFDYMLDEGLSEMFD-------------------------------------- 36
LV ++SF+ +D L ++
Sbjct: 26 LVSQQLDSFNQFVDYTLQDIICEDSTLILEQLAQHTTESDNISRKYEISFGKIYVTKPMV 85
Query: 37 -------------HCRQAKISYTGKLMADVEFQYLDA-----------------GSPVVR 66
R ++Y+ L DV+ + +A
Sbjct: 86 NESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTYEAIDVPGRELKYELIAEESEDDSES 145
Query: 67 ERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNY 126
+ G+ P+ML+++ C+L A L LKE +MGGYFI+NG E+V + N
Sbjct: 146 GKVFIGRLPIMLRSKNCYLSEATESDLYKLKECPFDMGGYFIINGSEKVLIAQERSAGNI 205
Query: 127 PMSMVRSSFRDRREGYTDKAVVIRCVRKDQS----SVTLKLYYLLNGSVR-LGFWLQGKE 181
F+ IR + S ++ +KLY S R + L +
Sbjct: 206 VQV-----FKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGREGSSARTIKATLPYIK 260
Query: 182 YLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSL 241
+P+ I+ +AL D EI H CYD + + +
Sbjct: 261 QDIPIVIIFRALGIIPDGEILEH--ICYDVNDWQML-----------EMLKPCVEDGFVI 307
Query: 242 TTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHL----NDNNDKFNLLIFML 297
R L IG + G++ E A+ +++ H+ + K L +M+
Sbjct: 308 QDRETALDFIGRRGTAL--GIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMI 365
Query: 298 QKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKK 357
+L D+ D + + L G L+ K + + D +
Sbjct: 366 NRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFKKLTK-------DIFRYMQRT 418
Query: 358 FDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRF 417
+ + N+K + +K I + ++ L TG Q + RAG + R +
Sbjct: 419 VEEAHDFNMKLAI---NAKTITSGLKYALATGNWGEQKK-AMSSRAGVSQVLNRYTYSST 474
Query: 418 ISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYD 477
+S R + G + R+L WG +CP TP+G+ CGL+ +++ + S
Sbjct: 475 LSHLRRTNTPIGRDG-KLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCI-SVGT 532
Query: 478 SRGNIRDFSKMR----------------TSILRVLIGVGMIPSLPKLVKSGPPAVLSVLL 521
I F T + + G+ + +L+++ +
Sbjct: 533 DPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDI 592
Query: 522 DGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPP-- 579
+ V + E E + ++ DD +G+ L + + + T
Sbjct: 593 NPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHIAKLMATEYQDI 652
Query: 580 --KFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-------------------PDGGD 618
F +E I E+ + I P
Sbjct: 653 EGGFEDVEEYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPAEANEENDLDVDPAKRI 712
Query: 619 GGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRA 678
+A TH EIHP+ +L V A++ P+ DHNQSPRN YQ M KQ MG + R
Sbjct: 713 RVSHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRM 772
Query: 679 DQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRG 738
D L PQ P+ T E P G NAIVA+ Y+GY+ ED+MI+N+SS+DRG
Sbjct: 773 DTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRG 832
Query: 739 MCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSV---IDSDGLPYVGQMIHPGE 795
+ +++ G + + +R + H +D DGL G + +
Sbjct: 833 LFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGED 892
Query: 796 PYCSIYDKTT------------NSWRTNSR--KGSESVFVDYVAVDMKNSKNLPQKANIR 841
+ +S R S + +E+ VD V + +++ + +R
Sbjct: 893 VIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVL--VTTNQDGLKFVKVR 950
Query: 842 FRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAML 901
R T+ P IGDKF+SRHGQKG + DMPF+ G+ PDLIINPHA PSRMT+A L
Sbjct: 951 VRTTKIPQIGDKFASRHGQKGTIGITYRREDMPFTA-EGIVPDLIINPHAIPSRMTVAHL 1009
Query: 902 LESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEV 961
+E + +K +L G DA+PF + V+ + ++LR G+ G EV
Sbjct: 1010 IECLLSKVAALSGNEGDASPFTDIT---------------VEGISKLLREHGYQSRGFEV 1054
Query: 962 LYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFG 1021
+Y+G G +L +IF GP YYQRLRHMV DK R+ G M +TRQP++GR R GG+RFG
Sbjct: 1055 MYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFG 1114
Query: 1022 EMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPA 1081
EMERD ++AHGAA L +RL SD +C +CG L
Sbjct: 1115 EMERDCMIAHGAASFLKERLMEASDAFRVHICGICG--LMTVIAKLNH------------ 1160
Query: 1082 RAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGDG 1128
+ C C + + +PY + L EL AMNI L
Sbjct: 1161 ---NQFECKGCDNKIDIYQIHIPYAAKLLFQELMAMNITPRLYTDRS 1204
>d1smyc_ e.29.1.1 (C:) RNA-polymerase beta {Thermus thermophilus
[TaxId: 274]}
Length = 1119
Score = 449 bits (1157), Expect = e-140
Identities = 227/1249 (18%), Positives = 384/1249 (30%), Gaps = 264/1249 (21%)
Query: 1 MARK---KSADFEPLRELVRHHIESFDYML----------DEGLSEMFDH---------- 37
M K + + PL L +ES+ L + G+ F
Sbjct: 1 MEIKRFGRIREVIPLPPLTEIQVESYRRALQADVPPEKRENVGIQAAFRETFPIEEEDKG 60
Query: 38 ----------------------CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFP 75
CR+ ++Y L A ++ + D G E F G P
Sbjct: 61 KGGLVLDFLEYRLGEPPFPQDECREKDLTYQAPLYARLQLIHKDTGLIKEDEVF-LGHIP 119
Query: 76 VMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSS- 134
+M + G FI+NG +RV S + RS
Sbjct: 120 LMTED------------------------GSFIINGADRVIVS----------QIHRSPG 145
Query: 135 --FRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKA 192
F I + K + L NG V ++ + P+ ++L+
Sbjct: 146 VYFTPDPARPGRYIASIIPLPKRGPW--IDLEVEPNGVV----SMKVNKRKFPLVLLLRV 199
Query: 193 LVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIG 252
L + + L + +V + E + + ++ R + + ++
Sbjct: 200 LGYDQE-TLARELGAYGELVQGLMDESVFAMRPEEALIRLFTLLRPGDPPKRDKAVAYVY 258
Query: 253 EHFQPVIDGLQSESYYAVAETVIRDYI----FVHLNDNNDKFNLLIFMLQKLFSLVDHT- 307
E+ AE + + D K + + L+ LF+L
Sbjct: 259 GLIADPRRYDLGEAGRYKAEEKLGIRLSGRTLARFEDGEFKDEVFLPTLRYLFALTAGVP 318
Query: 308 -SVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANI 366
D+ D L N+ I G L+T + L R ++ + E++ N
Sbjct: 319 GHEVDDIDHLGNRRIRTVGELMTDQFRVGLARLARGVRERMLMGSEDSLTPAKLVN---- 374
Query: 367 KKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHR 426
S+ + +I Q + + + L+ LR A+
Sbjct: 375 --------SRPLEAAIREFFSRS-----------QLSQFKDETNPLSSLRHKRRISALGP 415
Query: 427 GASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFS 486
G VR + +G +CPV TP+G GL+ + + RV D G IR
Sbjct: 416 GGLTRERAGFDVRDVHRTHYGRICPVETPEGANIGLITSLAAYARV----DELGFIR--- 468
Query: 487 KMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAH----LR 542
T RV+ GV ++ + R ++ +E +
Sbjct: 469 ---TPYRRVVGGVVT----------DEVVYMTATEEDRYTIAQANTPLEGNRIAAERVVA 515
Query: 543 RLKVSAASVIPDDLEVGYV-PLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELI 601
R K V P+++E V P + L F R + ++ ++Q + LI
Sbjct: 516 RRKGEPVIVSPEEVEFMDVSPKQVFSVNTNLIPFLEHDDANRALMGSNM---QTQAVPLI 572
Query: 602 GPFEQVFMEIRCPDGGDGG-----RRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656
V M + + + L Y N
Sbjct: 573 RAQAPVVMTGLEERVVRDSLAALYAEEDGEVAKVDGNRIVVRYEDGRLVEYPLRRFYRSN 632
Query: 657 MYQC--QMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIV 714
Q + +G V+ AD G N +V
Sbjct: 633 QGTALDQRPRVVVGQRVRKGDLLADGPASENG------------------FLALGQNVLV 674
Query: 715 AVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKS 774
A++ + GY+ EDA+++++ + R + I+ D +R + +A
Sbjct: 675 AIMPFDGYNFEDAIVISEELLKRDFYTSIHIERYEIEARDTKLGPERITRDIPHLSEAA- 733
Query: 775 LHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNS---------------------R 813
+D +G+ +G + PG+ S T
Sbjct: 734 -LRDLDEEGVVRIGAEVKPGDILVGRTSFKGESEPTPEERLLRSIFGEKARDVKDTSLRV 792
Query: 814 KGSESVFVDYVAVDMKN------SKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQL 867
E V + + + + R +GDK ++RHG KGV +++
Sbjct: 793 PPGEGGIVVRTVRLRRGDPGVELKPGVREVVRVYVAQKRKLQVGDKLANRHGNKGVVAKI 852
Query: 868 WPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANS-- 925
P DMP G D+I+NP PSRM + +LE+ G G+ + F +
Sbjct: 853 LPVEDMPHL-PDGTPVDVILNPLGVPSRMNLGQILETHLGLAGYFLGQRYISPIFDGAKE 911
Query: 926 ---------------VKKTNGDTGTDESKSLVDELGEMLRTC-----------GFNYHGV 959
K+ G D+ + V E L G
Sbjct: 912 PEIKELLAQAFEVYFGKRKGEGFGVDKREVEVLRRAEKLGLVTPGKTPEEQLKELFLQGK 971
Query: 960 EVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIR 1019
VLY G G + I +G ++ +L HMV DK RSTG IT+QP+ G+ + GG R
Sbjct: 972 VVLYDGRTGEPIEGPIVVGQMFIMKLYHMVEDKMHARSTGPYSLITQQPLGGKAQFGGQR 1031
Query: 1020 FGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLP 1079
FGEME +L A+GAA+ L + L SD
Sbjct: 1032 FGEMEVWALEAYGAAHTLQEMLTLKSDDIEGRNA-------------------------- 1065
Query: 1080 PARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGDG 1128
A + + ++P FR L EL A+ + +
Sbjct: 1066 --------AYEAIIKGEDVPEPSVPESFRVLVKELQALALDVQTLDEKD 1106
>d2b5ea2 c.47.1.2 (A:142-239) Protein disulfide isomerase, PDI
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 98
Score = 35.7 bits (82), Expect = 0.004
Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 17/84 (20%)
Query: 258 VIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQ 317
ID + ++Y++A DY FV + +D F L I++ P +
Sbjct: 27 KIDADFNATFYSMANKHFNDYDFVSAENADDDFKLSIYL----------------PSA-M 69
Query: 318 NQEILLPGHLITIYLKEKLEDWLR 341
++ ++ G I + E WL+
Sbjct: 70 DEPVVYNGKKADIADADVFEKWLQ 93
>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 124
Score = 28.2 bits (63), Expect = 2.4
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 125 NYPMSMVRSSFRDRREGYTDKAVVI--RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEY 182
NY +++S+ + V I ++ +S LYYL G +LG + K Y
Sbjct: 40 NYAWGLIKSTDVN----DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRY 95
Query: 183 L 183
+
Sbjct: 96 V 96
>d1cb8a1 a.102.3.2 (A:26-335) Chondroitinase AC {Pedobacter heparinus
(Flavobacterium heparinum) [TaxId: 984]}
Length = 310
Score = 28.7 bits (64), Expect = 4.5
Identities = 13/101 (12%), Positives = 23/101 (22%), Gaps = 22/101 (21%)
Query: 954 FNYHGVEVLYSGVYGTELTCEIF------------IGPVYYQRLRHMVSDKFQ-VRSTGT 1000
+ HG L YG + + D +
Sbjct: 197 YLQHG-PQLQISSYGAVFITGVLKLANYVRDTPYALSTEKLAIFSKYYRDSYLKAIRGSY 255
Query: 1001 MD------QITRQPIKGRKRGGGIRFGEMERDSLLAHGAAY 1035
MD ++R I +K + + L H +
Sbjct: 256 MDFNVEGRGVSRPDILNKKAEKKRL--LVAKMIDLKHTEEW 294
>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 142
Score = 27.2 bits (59), Expect = 6.6
Identities = 20/103 (19%), Positives = 40/103 (38%)
Query: 438 VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLI 497
K++ E+ + V +G GLL+ + R + MR I +V
Sbjct: 25 AVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKPIPKVKS 84
Query: 498 GVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAH 540
+ L ++G V GRVVG++ +++ + ++
Sbjct: 85 DYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSR 127
>d1llaa3 b.1.18.3 (A:380-628) Arthropod hemocyanin, C-terminal domain
{Horseshoe crab (Limulus polyphemus) [TaxId: 6850]}
Length = 249
Score = 27.9 bits (62), Expect = 6.9
Identities = 14/63 (22%), Positives = 21/63 (33%), Gaps = 11/63 (17%)
Query: 954 FNYHGVEVLYSGVYGTELTCEIFIGPVY----------YQRLRHMVSDKFQVRSTGTMDQ 1003
F+Y V V + T IF+ P Y R + DKF+ +
Sbjct: 62 FSYA-VNVQNNSASDKHATVRIFLAPKYDELGNEIKADELRRTAIELDKFKTDLHPGKNT 120
Query: 1004 ITR 1006
+ R
Sbjct: 121 VVR 123
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.407
Gapped
Lambda K H
0.267 0.0663 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 4,245,952
Number of extensions: 205676
Number of successful extensions: 543
Number of sequences better than 10.0: 1
Number of HSP's gapped: 526
Number of HSP's successfully gapped: 12
Length of query: 1131
Length of database: 2,407,596
Length adjustment: 95
Effective length of query: 1036
Effective length of database: 1,103,246
Effective search space: 1142962856
Effective search space used: 1142962856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.3 bits)