Your job contains 1 sequence.
>001181
MNDSDSFFNKTNNNKRSGENYLPSSISSPRGKSIIVSKTAVVRLQILHLPLVSTATGSPV
DSLTLEPDRPYSIGRASINCDFTFDNRLVSRQHCQILFDSSERKIYVLDGTFLLPAFSSV
VNEFRKKRDKSLEDEEEDEGFSRVMVSLNGVFVNGIRLKSGIVRELNAGDEVLFVCRDES
LCRLQTRIGFLILGIIFKEEVVLKRPRLVGTMASSGHSQGSVSSGTRSKRVFALRENDVS
NPDSVFPKLKRRDIFGRASFLLSQCRNILNSNDPVSCIQQIANSDMGIMSTYGCFSTKFP
GRSSIDGELKVKKIERISQQERKPCDESIYVGQPGSITFEDERVVDLEAEGDPVDPCVHN
DHLHHKDSVGISNKNATPGVKSKLLNSVDRQNATHFGSMDKSKSLGSSCSPPGKKFYLNR
LEFMDLTSLNYDVISLPELLYPVESISRMFIATFTSDILWFMSYCEIPSHLPVTIACHNT
ERCWSTSADKRTSVPYPNFPNLVLVFPPFPESVAFGENCKKQGIACHHPKLFVLQREDSI
RVIVTSANLGAKQWNAVTNTVWWQDFPRRCAPDYLSLFVQTPVEEINQDSRSDFTAQLAS
FMASLVIDVPSQAHWIVELTKYDFASAAGHLVASVPGIHSYRNPNLSESTYSKPVDHGAI
WSSDGKFLGSVETSVVGLSHLFRTAADSNGTQIKKLAAFLGKSFSAHGMLKILLRRNTNV
PADANAVSVLVPNPDELSDGDCIQLGFMPRDIAKWVSPLWDIGFIRFSGFISRDEVLAAA
LEGISKKVQLILHVSQGPKFSDISKMMQIEHVVALSSLIASIQRCRGLWRLQEVLGQYRW
PELQESDFSYGSSSIGSINAQFLAAFAAASGKKSLRFYDSEESDPEWGCWSASQELRSPS
IRIIFPTIERVRNACDGILPSKRVLCFSEKTWQRLRNVDILHDAIPHPHDRVGHPMHVKV
AWRRFQSRTDTSLGWVYCGSHNFSAAAWGRPIQTPSTIKPNGSEKTKSSSSQRLHICNYE
LGIVFVFPPTEKQSSTGNNTSNLDDIVLPFVVPAPKYRPKDRPATAQAMREALTELYEQQ
RSIIVEPAEEMMEIPDEEEELEATDYVGEEKEEEKAYADKLWSEVDSSQSS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 001181
(1131 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2183319 - symbol:AT5G07400 species:3702 "Arabi... 2160 9.5e-224 1
RGD|1309618 - symbol:Tdp1 "tyrosyl-DNA phosphodiesterase ... 112 2.5e-08 2
MGI|MGI:1920036 - symbol:Tdp1 "tyrosyl-DNA phosphodiester... 111 2.6e-08 2
TAIR|locus:2150931 - symbol:TDP1 "tyrosyl-DNA phosphodies... 113 2.9e-08 4
UNIPROTKB|F1NSQ5 - symbol:TDP1 "Uncharacterized protein" ... 113 3.9e-08 2
UNIPROTKB|Q9NUW8 - symbol:TDP1 "Tyrosyl-DNA phosphodieste... 113 8.2e-08 2
FB|FBgn0260817 - symbol:gkt "glaikit" species:7227 "Droso... 125 1.0e-07 2
ZFIN|ZDB-GENE-090909-1 - symbol:tdp1 "tyrosyl-DNA phospho... 111 1.3e-07 3
UNIPROTKB|G4N013 - symbol:MGG_06176 "Uncharacterized prot... 135 1.3e-07 2
UNIPROTKB|F1MST1 - symbol:TDP1 "Uncharacterized protein" ... 111 7.1e-07 2
UNIPROTKB|Q86TV8 - symbol:TDP1 "Full-length cDNA clone CS... 98 8.4e-07 2
UNIPROTKB|E7EPD8 - symbol:TDP1 "Tyrosyl-DNA phosphodieste... 113 1.3e-06 2
UNIPROTKB|E2REL5 - symbol:TDP1 "Uncharacterized protein" ... 102 1.5e-06 2
UNIPROTKB|G3V2F4 - symbol:TDP1 "Tyrosyl-DNA phosphodieste... 113 2.0e-06 2
UNIPROTKB|F1SDA7 - symbol:LOC100625067 "Uncharacterized p... 108 1.9e-05 2
DICTYBASE|DDB_G0273869 - symbol:DDB_G0273869 "Tyrosyl-DNA... 76 0.00075 5
DICTYBASE|DDB_G0273125 - symbol:DDB_G0273125 "Tyrosyl-DNA... 76 0.00075 5
>TAIR|locus:2183319 [details] [associations]
symbol:AT5G07400 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0008081 "phosphoric diester hydrolase activity" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] InterPro:IPR000253 InterPro:IPR008984
InterPro:IPR010347 InterPro:IPR014905 Pfam:PF00498 Pfam:PF06087
Pfam:PF08797 PROSITE:PS50006 SMART:SM00240 SMART:SM00910
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0008270
GO:GO:0006281 GO:GO:0003676 Gene3D:2.60.200.20 SUPFAM:SSF49879
GO:GO:0008081 GO:GO:0016818 PANTHER:PTHR12415 EMBL:BT006446
EMBL:AK227680 IPI:IPI00526172 RefSeq:NP_196357.2 UniGene:At.32724
ProteinModelPortal:Q84MA4 PaxDb:Q84MA4 PRIDE:Q84MA4
EnsemblPlants:AT5G07400.1 GeneID:830631 KEGG:ath:AT5G07400
TAIR:At5g07400 eggNOG:NOG319591 HOGENOM:HOG000083778
InParanoid:Q84MA4 OMA:ITSANLV PhylomeDB:Q84MA4
ProtClustDB:CLSN2681035 Genevestigator:Q84MA4 Uniprot:Q84MA4
Length = 1084
Score = 2160 (765.4 bits), Expect = 9.5e-224, P = 9.5e-224
Identities = 464/920 (50%), Positives = 593/920 (64%)
Query: 227 RSKRVFALRENDVSNPDSVFPKLKRRDIFGRASFLLSQCRNILNSNDPVSCIQQIANSDM 286
RSKRVFA EN++++P S F K + R + L+S CR+IL S+DP+SC++ S
Sbjct: 189 RSKRVFAPMENEINSPVSGFYPPKAVGVVERVNSLVSYCRHILKSDDPLSCLRLSIISHS 248
Query: 287 GIMSTYGCFSTKFPGRSSIDGELK-VKKIERISQQERKPCDESIYVGQPGSITFEDER-- 343
G C S F + I + + VK E + + +P S D R
Sbjct: 249 GKECLSCCTSKMFRSKVGIVADDRGVKSAEINHDMGHGLSGLRLSIERPNSNLHVDRRLG 308
Query: 344 VVDLEAEGDPVDPCVHNDHLHHKDSVGISNKNATPGVKSKLLNSVDRQNATHFGSMDKSK 403
V DL +E + N+ IS+K T L ++ N ++K K
Sbjct: 309 VSDLISE-------IENEFAA---CTFISDKTRT-----MLPFDGEKVNTPDITCINKEK 353
Query: 404 SLGSSCSPPGKKFYLNRLEFMDLTSLNYD-VISLPELLYPVESISRMFIATFTSDILWFM 462
S SS PGK FYLNRL++++ +S V+SLPELL+PVESI ++F+ATFTSDILWF+
Sbjct: 354 SYQSSLQAPGKNFYLNRLQYIEQSSTGCQRVVSLPELLHPVESIQQIFLATFTSDILWFL 413
Query: 463 SYCEIPSHLPVTIACHNTERCWSTSADKRTSVPYXXXXXXXXXXXXXXESVAFGENCKKQ 522
+ C+ P HLPVTIACHN ERCWS++ D RT+VP E +AFG++ +
Sbjct: 414 TCCDTPRHLPVTIACHNAERCWSSNPDARTAVPLPNYPNVTMVYPPFPEEIAFGKDRTNR 473
Query: 523 GIACHHPKLFVLQREDSIRVIVTSANLGAKQWNAVTNTVWWQDFPRRCAPDYLSLFVQTP 582
GIACHHPKLF+LQR+DSIRVI+TSANL A+QWN VTNTVWWQDFPRR PD LSLF
Sbjct: 474 GIACHHPKLFILQRKDSIRVIITSANLVARQWNDVTNTVWWQDFPRRADPDLLSLFGHCQ 533
Query: 583 VEEINQDSRSDFTAQLASFMASLVIDVPSQAHWIVELTKYDFASAAGHLVASVPGIHSYR 642
E N + DF AQLA F ASL+ DVPSQAHWI+E TKY+F +AGHLVASVPGIHSY+
Sbjct: 534 -RETNHGLKPDFCAQLAGFAASLLTDVPSQAHWILEFTKYNFEHSAGHLVASVPGIHSYK 592
Query: 643 NPNLSESTYSKPVDHGAIWSSDGKFLGSVETSVVGLSHLFRTAADSNGTQIKKLAAFLGK 702
L+ES S I+S + FLGSVE SVVGLS+LFR+A DS G Q+K+LA+++ +
Sbjct: 593 PSYLTESGCSN-----TIFSEE--FLGSVEASVVGLSYLFRSANDSTGAQLKRLASYIRR 645
Query: 703 SF-SAHGMLKILLRRNTNVPADANAVSVLVPNPDELSDGDCIQLGFMPRDIAKWVSPLWD 761
+ ++ GML+++LRRNTNVPAD NAV VLVPNPD+ S D +QLGF+PR IAKWVSPLWD
Sbjct: 646 TRENSLGMLELVLRRNTNVPADPNAVRVLVPNPDDDSRDDFVQLGFLPRSIAKWVSPLWD 705
Query: 762 IGFIRFSGFISRDEVLAAALEGISKKVQLILHVSQGPKFSDISKMMQIEHVVALSSLIAS 821
IGF +F G++ RDEVL AA ++KVQL+LHV QG SD+SK++Q HVVAL SLIAS
Sbjct: 706 IGFFKFVGYVYRDEVLGAASCRSNEKVQLVLHVLQGVSISDMSKLIQPYHVVALCSLIAS 765
Query: 822 IQRCRGLWRLQEVLGQYRWPELQESDFXXXXXXXX-XXNXXXXXXXXXXSGKKSLRFYDS 880
+QRC G+WRLQEVLG+Y+WPE QESDF +GKK+L+ +DS
Sbjct: 766 LQRCTGIWRLQEVLGRYKWPESQESDFVYSASSIGGSATTGFQADFSSAAGKKALQHFDS 825
Query: 881 EESDPEWGCWSASQELRSPSIRIIFPTIERVRNACDGILPSKRVLCFSEKTWQRLRNVDI 940
+ESDPEWGCWS +E +PSI+IIFPTIERV+N G+L S+R+LCFSEKTWQ+ R+ ++
Sbjct: 826 QESDPEWGCWSNREEREAPSIKIIFPTIERVKNGHHGVLSSRRLLCFSEKTWQKWRHSNV 885
Query: 941 LHDAIPHPHDRVGHPMHVKVAWRRFQSRT---DTSLGWVYCGSHNFSAAAWGRPIQTPST 997
LHDA+P+P DRVGHPMH+KVA R F S +S GWVY GSHNFSAAAWG QT S
Sbjct: 886 LHDAVPNPQDRVGHPMHIKVARRLFTSTRGSRSSSFGWVYSGSHNFSAAAWG---QTISR 942
Query: 998 IKPNGSEKTKSS--SSQRLHICNYELGIVFVFPPTEKQSSTGNNTSNLDDIVLPFVVPAP 1055
N +++ ++ + ++L +CNYELGIVFVFPP +++ + S +DDIVLPFVVPAP
Sbjct: 943 SSRNNQDQSNNAIRAVKKLRVCNYELGIVFVFPPPHEETDSCEG-SKIDDIVLPFVVPAP 1001
Query: 1056 KYRPKDRPATAQAMREALTELYEQQRSIIVXXXXXXXXXXXXXXXXXXT---DYVGXXXX 1112
KY D+PAT AMREA E E S ++V
Sbjct: 1002 KYGWSDKPATGLAMREAFAEFREGSTSFCGESEVEEEVEEEEEEEADAEGRGEFVAEEEK 1061
Query: 1113 XXX-AYADKLWSEVDSSQSS 1131
AYA+ LWS+V+SS SS
Sbjct: 1062 QEEEAYAEALWSQVESSSSS 1081
Score = 429 (156.1 bits), Expect = 1.8e-36, P = 1.8e-36
Identities = 112/317 (35%), Positives = 170/317 (53%)
Query: 41 VVRLQILHLPLVSTATGSPVDSLTLEPDRPYSIGRASIN--CDFTFDNRLVSRQHCQILF 98
V+R+ + PL+S ++G P++ ++ DRPY+IGR+S + CDF D+ +SR+HCQILF
Sbjct: 10 VIRIHNIGTPLISGSSGLPLELFHIQSDRPYTIGRSSSDGFCDFVIDHSSISRKHCQILF 69
Query: 99 DSSERKIYVLDGTFLLPA--FSSVVNEFRKKRDKSLEDEEEDEGFSRVMVSLNGVFVNGI 156
DS K+Y+ DG LP+ FS V +EFR++ L E D G + SLNGV+VN +
Sbjct: 70 DSQSHKLYIFDGVIHLPSGSFSQVYDEFRRR----LVGVE-DLGNLKFRASLNGVYVNRV 124
Query: 157 RLKSGIVRELNAGDEVLFVCRDESLCRLQTRIGFLILGIIFKEEVVLKRPRLVGTMAXXX 216
R++ V+E++ DEVLF C E LC R+GF++ I+F+ R + +++
Sbjct: 125 RVRKSKVQEVSIDDEVLFFCGKEGLCCKDGRVGFVVQEIVFEG-----RDASIVSVSSGH 179
Query: 217 XXXXXXXXXTRSKRVFALRENDVSNPDSVFPKLKRRDIFGRASFLLSQCRNILNSNDPVS 276
RSKRVFA EN++++P S F K + R + L+S CR+IL S+DP+S
Sbjct: 180 SRGTFSSGK-RSKRVFAPMENEINSPVSGFYPPKAVGVVERVNSLVSYCRHILKSDDPLS 238
Query: 277 CIQQIANSDMGIMSTYGCFSTKFPGRSSIDGELK-VKKIERISQQERKPCDESIYVGQPG 335
C++ S G C S F + I + + VK E + + +P
Sbjct: 239 CLRLSIISHSGKECLSCCTSKMFRSKVGIVADDRGVKSAEINHDMGHGLSGLRLSIERPN 298
Query: 336 SITFEDER--VVDLEAE 350
S D R V DL +E
Sbjct: 299 SNLHVDRRLGVSDLISE 315
>RGD|1309618 [details] [associations]
symbol:Tdp1 "tyrosyl-DNA phosphodiesterase 1" species:10116
"Rattus norvegicus" [GO:0000012 "single strand break repair"
evidence=IEA;ISO] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003690 "double-stranded DNA binding" evidence=IEA;ISO]
[GO:0003697 "single-stranded DNA binding" evidence=IEA;ISO]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=IEA;ISO]
[GO:0006281 "DNA repair" evidence=ISO] [GO:0006302 "double-strand
break repair" evidence=IEA;ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0017005 "3'-tyrosyl-DNA phosphodiesterase
activity" evidence=ISO;ISS] InterPro:IPR010347 Pfam:PF06087
RGD:1309618 GO:GO:0005634 GO:GO:0005737 GO:GO:0003690 GO:GO:0003697
GO:GO:0004527 GO:GO:0006302 GO:GO:0090305 GO:GO:0000012
GO:GO:0017005 eggNOG:NOG274417 GeneTree:ENSGT00390000002211
KO:K10862 PANTHER:PTHR12415 OMA:WGHLRLR CTD:55775
HOGENOM:HOG000067775 HOVERGEN:HBG061242 OrthoDB:EOG4NP736
EMBL:BC098739 IPI:IPI00367735 RefSeq:NP_001026827.1
UniGene:Rn.12661 ProteinModelPortal:Q4G056 SMR:Q4G056 STRING:Q4G056
PhosphoSite:Q4G056 PRIDE:Q4G056 Ensembl:ENSRNOT00000005167
GeneID:314380 KEGG:rno:314380 UCSC:RGD:1309618 InParanoid:Q4G056
NextBio:667547 Genevestigator:Q4G056 Uniprot:Q4G056
Length = 609
Score = 112 (44.5 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 27/111 (24%), Positives = 54/111 (48%)
Query: 527 HHPKLFVLQREDSIRVIVTSANLGAKQWNAVTNTVWWQDFPRRCAPDYLSLFVQTPVEEI 586
HH K+ +L E+ +RV++ ++NL + W+ T +W +P Y ++
Sbjct: 263 HHTKMMLLLYEEGLRVVIHTSNLIREDWHQKTQGIW-------LSPLYPRIYQGN---HT 312
Query: 587 NQDSRSDFTAQLASFMASLVIDVPSQAHWIVELTKYDFASAAGHLVASVPG 637
+ +S + F A L S++ + + P WI + ++D + +L+ S PG
Sbjct: 313 SGESSTHFKADLTSYL--MAYNAPPLQEWIDIIQEHDLSETNVYLIGSTPG 361
Score = 104 (41.7 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 44/170 (25%), Positives = 74/170 (43%)
Query: 901 IRIIFPTIERVRNACDGILPSKRVLCFSEKTWQRLRNVD-ILHDAIPHPHDRVGHPMHVK 959
+ +I+P++E VR + +G P+ L + +T ++ R + H R H+K
Sbjct: 438 LHLIYPSVENVRTSLEGY-PAGGSLPYGIQTAEKQRWLHPYFHKWSAETSGRSNAMPHIK 496
Query: 960 VAWRRFQSRTDTSLGWVYCGSHNFSAAAWGRPIQTPSTIKPNGSEKTKSSSSQRLHICNY 1019
R S + L W S N S AAWG ++ NG++ L I +Y
Sbjct: 497 TYMR--PSPDFSKLAWFLVTSANLSKAAWG-------ALEKNGAQ---------LMIRSY 538
Query: 1020 ELGIVFV---FPPTE---KQSSTGNNTSNLDDIVLPFVVPAPKYRPKDRP 1063
ELG++F+ F KQ +++ + +P+ +P Y KDRP
Sbjct: 539 ELGVLFLPSAFGLDTFKVKQKFFSSSSEPMASFPVPYDLPPELYGSKDRP 588
>MGI|MGI:1920036 [details] [associations]
symbol:Tdp1 "tyrosyl-DNA phosphodiesterase 1" species:10090
"Mus musculus" [GO:0000012 "single strand break repair"
evidence=ISO;IMP] [GO:0003690 "double-stranded DNA binding"
evidence=ISO] [GO:0003697 "single-stranded DNA binding"
evidence=ISO] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISO;IDA]
[GO:0006281 "DNA repair" evidence=ISO;IMP] [GO:0006302
"double-strand break repair" evidence=ISO] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0008081 "phosphoric diester
hydrolase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0017005 "3'-tyrosyl-DNA phosphodiesterase
activity" evidence=ISO] InterPro:IPR010347 Pfam:PF06087
MGI:MGI:1920036 GO:GO:0005634 GO:GO:0004527 GO:GO:0090305
GO:GO:0000012 GO:GO:0017005 eggNOG:NOG274417 PANTHER:PTHR12415
HOGENOM:HOG000067775 HOVERGEN:HBG061242 EMBL:AK033868 EMBL:BC019804
IPI:IPI00222253 UniGene:Mm.312323 UniGene:Mm.487464
UniGene:Mm.488658 ProteinModelPortal:Q8BJ37 SMR:Q8BJ37
IntAct:Q8BJ37 STRING:Q8BJ37 PhosphoSite:Q8BJ37 PaxDb:Q8BJ37
PRIDE:Q8BJ37 InParanoid:Q8BJ37 CleanEx:MM_TDP1
Genevestigator:Q8BJ37 GermOnline:ENSMUSG00000021177 Uniprot:Q8BJ37
Length = 609
Score = 111 (44.1 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 46/170 (27%), Positives = 74/170 (43%)
Query: 901 IRIIFPTIERVRNACDGILPSKRVLCFSEKTWQRLRNV-DILHDAIPHPHDRVGHPMHVK 959
+ +I+P++E VR + +G P+ L +S +T ++ R + H R H+K
Sbjct: 438 LHLIYPSVENVRTSLEGY-PAGGSLPYSIQTAEKQRWLHSYFHKWSAETSGRSNAMPHIK 496
Query: 960 VAWRRFQSRTDTSLGWVYCGSHNFSAAAWGRPIQTPSTIKPNGSEKTKSSSSQRLHICNY 1019
R S + L W S N S AAWG ++ NG++ L I +Y
Sbjct: 497 TYMR--PSPDFSKLAWFLVTSANLSKAAWG-------ALEKNGTQ---------LMIRSY 538
Query: 1020 ELGIVFV---FPPTE---KQSSTGNNTSNLDDIVLPFVVPAPKYRPKDRP 1063
ELG++F+ F KQ ++ +P+ +P YR KDRP
Sbjct: 539 ELGVLFLPSAFGLDTFKVKQKFFSSSCEPTASFPVPYDLPPELYRSKDRP 588
Score = 105 (42.0 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 31/112 (27%), Positives = 54/112 (48%)
Query: 527 HHPKLFVLQREDSIRVIVTSANLGAKQWNAVTNTVWWQD-FPRRCAPDYLSLFVQTPVEE 585
HH K+ +L E+ +RV++ ++NL + W+ T +W +PR D S T E
Sbjct: 263 HHTKMMLLLYEEGLRVVIHTSNLIREDWHQKTQGIWLSPLYPRI---DQGS---HTAGE- 315
Query: 586 INQDSRSDFTAQLASFMASLVIDVPSQAHWIVELTKYDFASAAGHLVASVPG 637
S + F A L S++ + + P WI + ++D + +L+ S PG
Sbjct: 316 ----SSTRFKADLTSYLTAY--NAPPLQEWIDIIQEHDLSETNVYLIGSTPG 361
>TAIR|locus:2150931 [details] [associations]
symbol:TDP1 "tyrosyl-DNA phosphodiesterase 1"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0008081
"phosphoric diester hydrolase activity" evidence=IEA] [GO:0017005
"3'-tyrosyl-DNA phosphodiesterase activity" evidence=IDA]
[GO:0009616 "virus induced gene silencing" evidence=RCA]
[GO:0010050 "vegetative phase change" evidence=RCA]
InterPro:IPR000253 InterPro:IPR008984 InterPro:IPR010347
Pfam:PF06087 GO:GO:0005634 EMBL:CP002688 GO:GO:0006281
Gene3D:2.60.200.20 SUPFAM:SSF49879 GO:GO:0017005 eggNOG:NOG274417
KO:K10862 PANTHER:PTHR12415 HSSP:Q9NUW8 EMBL:AY150498 EMBL:FJ858738
IPI:IPI00525009 RefSeq:NP_197021.2 UniGene:At.27105
ProteinModelPortal:Q8H1D9 IntAct:Q8H1D9 PaxDb:Q8H1D9 PRIDE:Q8H1D9
EnsemblPlants:AT5G15170.1 GeneID:831369 KEGG:ath:AT5G15170
TAIR:At5g15170 InParanoid:Q8H1D9 OMA:CRAMPHI PhylomeDB:Q8H1D9
ProtClustDB:CLSN2690163 Genevestigator:Q8H1D9 Uniprot:Q8H1D9
Length = 605
Score = 113 (44.8 bits), Expect = 2.9e-08, Sum P(4) = 2.9e-08
Identities = 37/122 (30%), Positives = 55/122 (45%)
Query: 527 HHPKLFVLQREDSIRVIVTSANLGAKQWNAVTNTVWWQDFPRRCA---PDYLSLFVQTPV 583
HH K L +RV+V +ANL WN + +W QDFP + P F +
Sbjct: 235 HHSKAIFLVYPRGVRVVVHTANLIHVDWNNKSQGLWMQDFPWKDDDKDPPKGCGFEGDLI 294
Query: 584 EEINQDSRSDFTAQLASFMASLVIDVPSQAHWIVELTKYDFASAAGHLVASVPGIHSYRN 643
+ +N +FTA L ++ I+ K+D++ A L+ASVPG H+ N
Sbjct: 295 DYLNVLKWPEFTANLPG-RGNVKINAAF-------FKKFDYSDATVRLIASVPGYHTGFN 346
Query: 644 PN 645
N
Sbjct: 347 LN 348
Score = 85 (35.0 bits), Expect = 2.9e-08, Sum P(4) = 2.9e-08
Identities = 47/152 (30%), Positives = 65/152 (42%)
Query: 903 IIFPTIERVRNACDGI-----LPS--KRV-LCFSEKTWQRLRNVDILHDAIPHPHDRVGH 954
II+PT+E VR + +G +PS K V F +K W R + D H G
Sbjct: 413 IIWPTVEDVRCSLEGYAAGNAIPSPLKNVEKPFLKKYWARWK-AD---------HSARGR 462
Query: 955 PM-HVKVAWRRFQSRTDTSLGWVYCGSHNFSAAAWGRPIQTPSTIKPNGSEKTKSSSSQR 1013
M H+K F D + W S N S AAWG ++ N S+
Sbjct: 463 AMPHIKT----FTRYNDQKIAWFLLTSSNLSKAAWG-------ALQKNNSQ--------- 502
Query: 1014 LHICNYELGIVFVFPPTEKQ----SSTGNNTS 1041
L I +YELG++F+ P + Q S T +N S
Sbjct: 503 LMIRSYELGVLFLPSPIKTQGCVFSCTESNPS 534
Score = 54 (24.1 bits), Expect = 2.9e-08, Sum P(4) = 2.9e-08
Identities = 25/71 (35%), Positives = 35/71 (49%)
Query: 63 LTLEPDRPYSIGRASINCDFTFDNRLVSRQHCQILFDSSERKIYVLDGTFLLPAFSSVVN 122
+TL + P IGR +++ D RL SR+H I+ +S +DGT + SS
Sbjct: 25 ITLS-EGPNIIGRGNVSI---VDKRL-SRKHITIIVSTSGSASLSVDGTNPVVIRSSGDG 79
Query: 123 EFRKKRDKSLE 133
E RKK S E
Sbjct: 80 E-RKKVKPSEE 89
Score = 49 (22.3 bits), Expect = 2.9e-08, Sum P(4) = 2.9e-08
Identities = 18/82 (21%), Positives = 36/82 (43%)
Query: 400 DKSKSLGSSCSPPGKKFYLN-RLEFMDLTS--LNYDVISLPELLYPVESISRMFIATFTS 456
D +++ C PP +K RL +D N +S+ +++ + ++ +
Sbjct: 125 DDVEAIRRFC-PPNEKLPSTFRLLSVDALPDWANTSCVSINDVIEG--DVVAAILSNYMV 181
Query: 457 DILWFMSYCEIPSHLPVTIACH 478
DI W MS C +++P + H
Sbjct: 182 DIDWLMSACPKLANIPQVMVIH 203
>UNIPROTKB|F1NSQ5 [details] [associations]
symbol:TDP1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000012 "single strand break repair" evidence=IEA]
[GO:0003690 "double-stranded DNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0017005
"3'-tyrosyl-DNA phosphodiesterase activity" evidence=IEA]
InterPro:IPR010347 Pfam:PF06087 GO:GO:0005634 GO:GO:0005737
GO:GO:0003690 GO:GO:0003697 GO:GO:0006302 GO:GO:0000012
GO:GO:0017005 GeneTree:ENSGT00390000002211 PANTHER:PTHR12415
OMA:WGHLRLR EMBL:AADN02003623 IPI:IPI00587496
Ensembl:ENSGALT00000017359 Uniprot:F1NSQ5
Length = 602
Score = 113 (44.8 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 31/128 (24%), Positives = 61/128 (47%)
Query: 511 ESVAFGENCKKQGIACHHPKLFVLQREDSIRVIVTSANLGAKQWNAVTNTVWWQD-FPRR 569
E+++F + HH K+ +L E+ +RV++ ++NL A+ W+ T +W +PR
Sbjct: 237 ENISFCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIAEDWHQKTQGIWLSPLYPR- 295
Query: 570 CAPDYLSLFVQTPVEEINQDSRSDFTAQLASFMASLVIDVPSQAHWIVELTKYDFASAAG 629
P S + +S ++F + L S++ + P WI + ++D +
Sbjct: 296 -LPQGSS--------DSAGESETNFKSDLISYL--MAYSSPVLKEWIDLIREHDLSETRV 344
Query: 630 HLVASVPG 637
+L+ S PG
Sbjct: 345 YLLGSTPG 352
Score = 101 (40.6 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 49/173 (28%), Positives = 74/173 (42%)
Query: 901 IRIIFPTIERVRNACDGILPSKRVLCFSEKTWQR-LRNVDILHDAIPHPHDRVGHPM-HV 958
I +++PT+ VR + +G P+ L +S +T Q+ L H R H M H+
Sbjct: 429 IHLVYPTVSNVRQSLEGY-PAGGSLPYSIQTAQKQLWLHSYFHKWSAEVSGR-SHAMPHI 486
Query: 959 KVAWRRFQSRTDTSLGWVYCGSHNFSAAAWGRPIQTPSTIKPNGSEKTKSSSSQRLHICN 1018
K R S + W S N S AAWG ++ NG++ L I +
Sbjct: 487 KTYMR--PSHDFQKIAWFLVTSANLSKAAWG-------ALEKNGTQ---------LMIRS 528
Query: 1019 YELGIVFV---FPPTEKQSST-GNNTSNLDDIV----LPFVVPAPKYRPKDRP 1063
YELG++F+ F + GN S D +PF +P +Y KD+P
Sbjct: 529 YELGVLFLPSAFGLDKGYFHVKGNMLSEGKDSATSFPVPFDLPPERYGSKDQP 581
>UNIPROTKB|Q9NUW8 [details] [associations]
symbol:TDP1 "Tyrosyl-DNA phosphodiesterase 1" species:9606
"Homo sapiens" [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0008219 "cell death" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0017005
"3'-tyrosyl-DNA phosphodiesterase activity" evidence=IDA]
[GO:0006281 "DNA repair" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0000012 "single strand break repair"
evidence=IDA;IMP] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] Reactome:REACT_216 InterPro:IPR010347 Pfam:PF06087
UniProt:Q9NUW8 GO:GO:0005634 GO:GO:0005737 GO:GO:0008219
GO:GO:0003690 GO:GO:0003697 GO:GO:0004527 GO:GO:0006302
GO:GO:0090305 GO:GO:0000012 GO:GO:0017005 eggNOG:NOG274417
KO:K10862 PANTHER:PTHR12415 OMA:WGHLRLR EMBL:AK001952 EMBL:DQ367843
EMBL:AL137128 EMBL:BC015474 EMBL:AF182002 EMBL:AF182003
IPI:IPI00655885 RefSeq:NP_001008744.1 RefSeq:NP_060789.2
UniGene:Hs.209945 PDB:1JY1 PDB:1MU7 PDB:1MU9 PDB:1NOP PDB:1QZQ
PDB:1RFF PDB:1RFI PDB:1RG1 PDB:1RG2 PDB:1RGT PDB:1RGU PDB:1RH0
PDBsum:1JY1 PDBsum:1MU7 PDBsum:1MU9 PDBsum:1NOP PDBsum:1QZQ
PDBsum:1RFF PDBsum:1RFI PDBsum:1RG1 PDBsum:1RG2 PDBsum:1RGT
PDBsum:1RGU PDBsum:1RH0 ProteinModelPortal:Q9NUW8 SMR:Q9NUW8
IntAct:Q9NUW8 MINT:MINT-3074488 STRING:Q9NUW8 PhosphoSite:Q9NUW8
DMDM:37999797 PaxDb:Q9NUW8 PRIDE:Q9NUW8 Ensembl:ENST00000335725
Ensembl:ENST00000393454 GeneID:55775 KEGG:hsa:55775 UCSC:uc001xxy.3
CTD:55775 GeneCards:GC14P090422 HGNC:HGNC:18884 MIM:607198
MIM:607250 neXtProt:NX_Q9NUW8 Orphanet:94124 PharmGKB:PA421
HOGENOM:HOG000067775 HOVERGEN:HBG061242 InParanoid:Q9NUW8
OrthoDB:EOG4NP736 PhylomeDB:Q9NUW8 SABIO-RK:Q9NUW8 BindingDB:Q9NUW8
ChEMBL:CHEMBL1075138 EvolutionaryTrace:Q9NUW8 GenomeRNAi:55775
NextBio:60841 ArrayExpress:Q9NUW8 Bgee:Q9NUW8 CleanEx:HS_TDP1
Genevestigator:Q9NUW8 GermOnline:ENSG00000042088
Length = 608
Score = 113 (44.8 bits), Expect = 8.2e-08, Sum P(2) = 8.2e-08
Identities = 30/112 (26%), Positives = 53/112 (47%)
Query: 527 HHPKLFVLQREDSIRVIVTSANLGAKQWNAVTNTVWWQD-FPRRCAPDYLSLFVQTPVEE 585
HH K+ +L E+ +RV++ ++NL W+ T +W +PR + S
Sbjct: 262 HHTKMMLLLYEEGLRVVIHTSNLIHADWHQKTQGIWLSPLYPRIADGTHKS--------- 312
Query: 586 INQDSRSDFTAQLASFMASLVIDVPSQAHWIVELTKYDFASAAGHLVASVPG 637
+S + F A L S++ + + PS WI + K+D + +L+ S PG
Sbjct: 313 --GESPTHFKADLISYL--MAYNAPSLKEWIDVIHKHDLSETNVYLIGSTPG 360
Score = 98 (39.6 bits), Expect = 8.2e-08, Sum P(2) = 8.2e-08
Identities = 44/173 (25%), Positives = 73/173 (42%)
Query: 898 SPSIRIIFPTIERVRNACDGILPSKRVLCFSEKTWQRLRNV-DILHDAIPHPHDRVGHPM 956
S + +I+P++E VR + +G P+ L +S +T ++ + H R
Sbjct: 434 SVPLYLIYPSVENVRTSLEGY-PAGGSLPYSIQTAEKQNWLHSYFHKWSAETSGRSNAMP 492
Query: 957 HVKVAWRRFQSRTDTSLGWVYCGSHNFSAAAWGRPIQTPSTIKPNGSEKTKSSSSQRLHI 1016
H+K R S + + W S N S AAWG ++ NG++ L I
Sbjct: 493 HIKTYMR--PSPDFSKIAWFLVTSANLSKAAWG-------ALEKNGTQ---------LMI 534
Query: 1017 CNYELGIVFV---FPPTE---KQSSTGNNTSNLDDIVLPFVVPAPKYRPKDRP 1063
+YELG++F+ F KQ + + +P+ +P Y KDRP
Sbjct: 535 RSYELGVLFLPSAFGLDSFKVKQKFFAGSQEPMATFPVPYDLPPELYGSKDRP 587
>FB|FBgn0260817 [details] [associations]
symbol:gkt "glaikit" species:7227 "Drosophila melanogaster"
[GO:0008081 "phosphoric diester hydrolase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0045197 "establishment or maintenance of
epithelial cell apical/basal polarity" evidence=IMP] [GO:0007417
"central nervous system development" evidence=IMP]
InterPro:IPR010347 Pfam:PF06087 GO:GO:0005634 GO:GO:0005737
EMBL:AE014134 GO:GO:0006281 GO:GO:0007417 GO:GO:0004527
GO:GO:0090305 InterPro:IPR019406 Pfam:PF10283 GO:GO:0017005
GO:GO:0045197 eggNOG:NOG274417 GeneTree:ENSGT00390000002211
KO:K10862 PANTHER:PTHR12415 EMBL:AJ277122 EMBL:AY051884
EMBL:AY060810 RefSeq:NP_523465.2 UniGene:Dm.3843
ProteinModelPortal:Q9VQM4 SMR:Q9VQM4 MINT:MINT-1647814
STRING:Q9VQM4 PaxDb:Q9VQM4 PRIDE:Q9VQM4 EnsemblMetazoa:FBtr0077574
GeneID:33530 KEGG:dme:Dmel_CG8825 CTD:33530 FlyBase:FBgn0260817
InParanoid:Q9VQM4 OMA:WGHLRLR OrthoDB:EOG4HMGRD PhylomeDB:Q9VQM4
GenomeRNAi:33530 NextBio:784060 Bgee:Q9VQM4 GermOnline:CG8825
Uniprot:Q9VQM4
Length = 580
Score = 125 (49.1 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 51/173 (29%), Positives = 73/173 (42%)
Query: 895 ELRS-PSIRIIFPTIERVRNACDGILPSKRVLCFSEKTWQRLRNV-DILHDAIPHPHDRV 952
+LR P ++I+P+ V + DG+L L + + T + + D L R
Sbjct: 416 KLRQMPPFKMIYPSYGNVAGSHDGMLGGG-CLPYGKNTNDKQPWLKDYLQQWKSSDRFRS 474
Query: 953 GHPMHVKVAWRRFQSRTDTSLGWVYCGSHNFSAAAWGRPIQTPSTIKPNGSEKTKSSSSQ 1012
H+K ++ RF D S+ W S N S AAWG S I+P
Sbjct: 475 RAMPHIK-SYTRFNLE-DQSVYWFVLTSANLSKAAWGC-FNKNSNIQPC----------- 520
Query: 1013 RLHICNYELGIVFV--FPPTEKQSSTGNNTSNLDDIVLPFVVPAPKYRPKDRP 1063
L I NYE G++F+ F E GNN + LP+ VP Y P D+P
Sbjct: 521 -LRIANYEAGVLFLPRFVTGEDTFPLGNNRDGVPAFPLPYDVPLTPYAPDDKP 572
Score = 84 (34.6 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 34/117 (29%), Positives = 51/117 (43%)
Query: 525 ACHHPKLFVLQRED-SIRVIVTSANLGAKQWNAVTNTVWWQDFPRRCAPDYLSLFVQTPV 583
A H K+ L D S+RV++++ANL W+ T +W P+ A L + T
Sbjct: 245 ATSHTKMMFLGYSDGSMRVVISTANLYEDDWHNRTQGLWIS--PKLPA---LPVDADTGA 299
Query: 584 EEINQDSRSDFTAQLASFMASLVIDVPSQAH-WIVELTKYDFASAAGHLVASVPGIH 639
E S + F L ++ I SQ WI + DF++ + SVPG H
Sbjct: 300 GE----SLTGFKQDLMLYLVEYKI---SQLQPWIARIRNSDFSAINVFFLGSVPGGH 349
>ZFIN|ZDB-GENE-090909-1 [details] [associations]
symbol:tdp1 "tyrosyl-DNA phosphodiesterase 1"
species:7955 "Danio rerio" [GO:0008081 "phosphoric diester
hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
InterPro:IPR010347 Pfam:PF06087 ZFIN:ZDB-GENE-090909-1
GO:GO:0005634 GO:GO:0006281 GO:GO:0008081
GeneTree:ENSGT00390000002211 KO:K10862 PANTHER:PTHR12415 CTD:55775
EMBL:BX005004 EMBL:BX927236 IPI:IPI00900849 RefSeq:XP_700174.2
UniGene:Dr.76799 Ensembl:ENSDART00000108712
Ensembl:ENSDART00000150149 GeneID:571485 KEGG:dre:571485
NextBio:20890577 Uniprot:E7FEK0
Length = 615
Score = 111 (44.1 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 60/271 (22%), Positives = 110/271 (40%)
Query: 415 KFYLNRLEFMDLTSLNYDVISLPELLYPVESISRMFIA-TFTSDILWFMS-YCEIPSHLP 472
+FYLN++ + N + + E+L P+ + + + DI W + Y + P
Sbjct: 172 RFYLNKVTGIP-KKYNTGALHIKEILSPMFGTLKESVQFNYCFDIPWMVEQYPPEFRNKP 230
Query: 473 VTIACHNTERCWSTSADKRTSVPYXXXXXXXXXXXXXXESVAFGENCKKQGIACHHPKLF 532
V + H +R S + + PY +AFG HH K+
Sbjct: 231 VVLV-HGEKR-ESKACLIEQAKPYPHISFCQAKL-----DIAFGT---------HHTKMM 274
Query: 533 VLQREDSIRVIVTSANLGAKQWNAVTNTVWWQDFPRRCAPDYLSLFVQTPVEEINQDSRS 592
+L E+ RVI+ ++NL W T +W +P Y L +P +S +
Sbjct: 275 LLWYEEGFRVIILTSNLIRADWYQKTQGMWM-------SPLYPRLPQGSPGTA--GESLT 325
Query: 593 DFTAQLASFMASLVIDVPSQAHWIVELTKYDFASAAGHLVASVPGIHSYRNPNLSE---- 648
F L ++ + P A+WI + ++D + +L+ S PG Y+ P + +
Sbjct: 326 GFKRDLLEYLEAY--RAPELANWIERIKQHDLSETRVYLIGSTPG--RYQGPAMEKWGHL 381
Query: 649 ------STYSKPVDHGAIWSSDGKF--LGSV 671
S +++P+ + W G+F +GS+
Sbjct: 382 RLRKLLSEHTQPMQNEERWHVLGQFSSIGSM 412
Score = 103 (41.3 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 50/182 (27%), Positives = 79/182 (43%)
Query: 892 ASQELRSPSIR--IIFPTIERVRNACDGILPSKRVLCFSEKTWQR-LRNVDILHDAIPHP 948
A + L SP + +I+P++E VR + +G P+ L +S +T Q+ L H
Sbjct: 434 AGKSLASPETQMLLIYPSVENVRTSLEGY-PAGGSLPYSIQTAQKQLWLHSYFHGWHADV 492
Query: 949 HDRVGHPMHVKVAWRRFQSRTDTSLGWVYCGSHNFSAAAWGRPIQTPSTIKPNGSEKTKS 1008
R H+K R S T L W S N S AAWG ++ N ++
Sbjct: 493 TGRSNAMPHIKTYMRI--SPDFTQLAWFLVTSANLSKAAWG-------ALEKNNTQ---- 539
Query: 1009 SSSQRLHICNYELGIVFV---FP----PTEKQSSTGNNTSNLDDIVLPFVVPAPKYRPKD 1061
+ + +YELG++++ F P EK ++S +PF +P +Y KD
Sbjct: 540 -----IMVRSYELGVLYLPSAFNMSTFPVEKNVFPACSSSI--GFPVPFDLPPQRYSSKD 592
Query: 1062 RP 1063
RP
Sbjct: 593 RP 594
Score = 40 (19.1 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 18/73 (24%), Positives = 28/73 (38%)
Query: 340 EDERVVDLEAEGDPVDPCVHNDHLHHKDSVGISNKNATPGVKSKLL-NSVDRQNATHFGS 398
EDE ++ + D V P V D + K P + K NSV +A GS
Sbjct: 16 EDEDIIPPTPQKDSVKPIVKPDSQSKPEETPTFLKQE-PRLSPKRNENSVKTASAPSMGS 74
Query: 399 MDKSKSLGSSCSP 411
+ + + +P
Sbjct: 75 EARKSAHVNQANP 87
>UNIPROTKB|G4N013 [details] [associations]
symbol:MGG_06176 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR010347
Pfam:PF06087 GO:GO:0005634 EMBL:CM001233 GO:GO:0006281
GO:GO:0008081 KO:K10862 PANTHER:PTHR12415 RefSeq:XP_003712058.1
EnsemblFungi:MGG_06176T0 GeneID:2684314 KEGG:mgr:MGG_06176
Uniprot:G4N013
Length = 555
Score = 135 (52.6 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 38/126 (30%), Positives = 61/126 (48%)
Query: 527 HHPKLFVLQR-EDSIRVIVTSANLGAKQWNAVTNTVWWQDFPRRCAPDYLSLFVQTPVEE 585
HH K+ VL R +D+ +VI+ +AN+ K W +TN +W PR + E
Sbjct: 183 HHSKMLVLLRHDDTAQVIIHTANMIPKDWTNMTNGIWLS--PRLPLLQGQDPADASQYEN 240
Query: 586 INQDSRSDFTAQLASFMASLVIDVPSQAHWIVELTKYDFASAAGHLVASVPGIHSYRNPN 645
+ + + F L +++ + + L KYDF+S G L+ASVPG H + +
Sbjct: 241 LAEGTGYKFKIDLLNYLRAYDDKRVVCRDLVTNLEKYDFSSIRGTLIASVPGRHDFTD-- 298
Query: 646 LSESTY 651
LS S +
Sbjct: 299 LSTSAW 304
Score = 72 (30.4 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 29/104 (27%), Positives = 44/104 (42%)
Query: 899 PSIRIIFPTIERVRNACDGILPSKRV---LCFSEKTWQRLRNVDIL-HDAIPHPHDR-VG 953
P +IIFPT + +R + DG + + S++ Q + +L H A PH + +G
Sbjct: 362 PQFKIIFPTADEIRRSLDGYGSGGSIHTKIQSSQQAKQLIYQKPLLCHWANDSPHGQDLG 421
Query: 954 HPMHVKVAWR-RFQSRTDT-------SLGWVYCGSHNFSAAAWG 989
+ + A R R T S+ W S N S AWG
Sbjct: 422 QNIPILDAGRNRAAPHIKTYIRYGANSIDWALLSSANLSKQAWG 465
>UNIPROTKB|F1MST1 [details] [associations]
symbol:TDP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017005 "3'-tyrosyl-DNA phosphodiesterase activity"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=IEA] [GO:0000012 "single strand break repair"
evidence=IEA] InterPro:IPR010347 Pfam:PF06087 GO:GO:0005634
GO:GO:0005737 GO:GO:0003690 GO:GO:0003697 GO:GO:0006302
GO:GO:0000012 GO:GO:0017005 GeneTree:ENSGT00390000002211 KO:K10862
PANTHER:PTHR12415 OMA:WGHLRLR CTD:55775 EMBL:DAAA02030029
IPI:IPI00717294 RefSeq:NP_001180084.1 UniGene:Bt.26165
Ensembl:ENSBTAT00000017463 GeneID:517053 KEGG:bta:517053
NextBio:20872364 Uniprot:F1MST1
Length = 612
Score = 111 (44.1 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
Identities = 29/111 (26%), Positives = 56/111 (50%)
Query: 527 HHPKLFVLQREDSIRVIVTSANLGAKQWNAVTNTVWWQDFPRRCAPDYLSLFVQTPVEEI 586
HH K+ +L E+ +RV++ ++NL + W+ T +W +P Y + T
Sbjct: 266 HHTKMMLLLYEEGLRVVIHTSNLIREDWHQKTQGIW-------LSPLYPRIVHGT---HG 315
Query: 587 NQDSRSDFTAQLASFMASLVIDVPSQAHWIVELTKYDFASAAGHLVASVPG 637
+ +S ++F A L S++A+ + WI + ++D + +L+AS PG
Sbjct: 316 SGESATNFKADLISYLAAY--NAAPLKEWIDTIQEHDLSETNVYLIASTPG 364
Score = 91 (37.1 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
Identities = 47/181 (25%), Positives = 77/181 (42%)
Query: 893 SQELRSPS-IRIIFPTIERVRNACDGILPSKRVLCFSEKTWQRLRNV-DILHDAIPHPHD 950
S+ L S + + +I+P++E VR + +G P+ L +S +T ++ + H
Sbjct: 431 SRTLGSAAPLHLIYPSVENVRTSLEGY-PAGGSLPYSIQTAEKQNWLHSYFHKWSADTSG 489
Query: 951 RVGHPMHVKVAWRRFQSRTDTSLGWVYCGSHNFSAAAWGRPIQTPSTIKPNGSEKTKSSS 1010
R H+K R S + + W S N S AAWG EK S
Sbjct: 490 RSNAMPHIKTYLR--PSPDFSQIAWFLVTSANLSKAAWG------------ALEK----S 531
Query: 1011 SQRLHICNYELGIVFV--------FPPTEKQSSTGNNTSNLDDIVLPFVVPAPKYRPKDR 1062
+L I +YELG++F+ F +K S G++ +P+ +P Y +DR
Sbjct: 532 GTQLMIRSYELGVLFLPSAFGLDSFKVKQKFFS-GSSQEPTASFPVPYDLPPEVYGDRDR 590
Query: 1063 P 1063
P
Sbjct: 591 P 591
>UNIPROTKB|Q86TV8 [details] [associations]
symbol:TDP1 "Full-length cDNA clone CS0DI031YK16 of
Placenta of Homo sapiens (human)" species:9606 "Homo sapiens"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0008081 "phosphoric diester hydrolase activity"
evidence=IEA] InterPro:IPR010347 Pfam:PF06087 GO:GO:0005634
GO:GO:0006281 GO:GO:0008081 PANTHER:PTHR12415 EMBL:AL137128
UniGene:Hs.209945 HGNC:HGNC:18884 EMBL:BX161451 IPI:IPI00384157
HSSP:Q9NUW8 SMR:Q86TV8 STRING:Q86TV8 Ensembl:ENST00000357382
UCSC:uc001xya.3 HOGENOM:HOG000147157 HOVERGEN:HBG067466
Uniprot:Q86TV8
Length = 369
Score = 98 (39.6 bits), Expect = 8.4e-07, Sum P(2) = 8.4e-07
Identities = 28/109 (25%), Positives = 51/109 (46%)
Query: 530 KLFVLQREDSIRVIVTSANLGAKQWNAVTNTVWWQD-FPRRCAPDYLSLFVQTPVEEINQ 588
K+ +L E+ +RV++ ++NL W+ T +W +PR + S
Sbjct: 26 KMMLLLYEEGLRVVIHTSNLIHADWHQKTQGIWLSPLYPRIADGTHKS-----------G 74
Query: 589 DSRSDFTAQLASFMASLVIDVPSQAHWIVELTKYDFASAAGHLVASVPG 637
+S + F A L S++ + + PS WI + K+D + +L+ S PG
Sbjct: 75 ESPTHFKADLISYL--MAYNAPSLKEWIDVIHKHDLSETNVYLIGSTPG 121
Score = 98 (39.6 bits), Expect = 8.4e-07, Sum P(2) = 8.4e-07
Identities = 44/173 (25%), Positives = 73/173 (42%)
Query: 898 SPSIRIIFPTIERVRNACDGILPSKRVLCFSEKTWQRLRNV-DILHDAIPHPHDRVGHPM 956
S + +I+P++E VR + +G P+ L +S +T ++ + H R
Sbjct: 195 SVPLYLIYPSVENVRTSLEGY-PAGGSLPYSIQTAEKQNWLHSYFHKWSAETSGRSNAMP 253
Query: 957 HVKVAWRRFQSRTDTSLGWVYCGSHNFSAAAWGRPIQTPSTIKPNGSEKTKSSSSQRLHI 1016
H+K R S + + W S N S AAWG ++ NG++ L I
Sbjct: 254 HIKTYMR--PSPDFSKIAWFLVTSANLSKAAWG-------ALEKNGTQ---------LMI 295
Query: 1017 CNYELGIVFV---FPPTE---KQSSTGNNTSNLDDIVLPFVVPAPKYRPKDRP 1063
+YELG++F+ F KQ + + +P+ +P Y KDRP
Sbjct: 296 RSYELGVLFLPSAFGLDSFKVKQKFFAGSQEPMATFPVPYDLPPELYGSKDRP 348
>UNIPROTKB|E7EPD8 [details] [associations]
symbol:TDP1 "Tyrosyl-DNA phosphodiesterase 1" species:9606
"Homo sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0008081 "phosphoric diester hydrolase
activity" evidence=IEA] InterPro:IPR010347 Pfam:PF06087
GO:GO:0005634 GO:GO:0006281 GO:GO:0008081 PANTHER:PTHR12415
EMBL:AL137128 HGNC:HGNC:18884 IPI:IPI00872094
ProteinModelPortal:E7EPD8 SMR:E7EPD8 Ensembl:ENST00000393452
UCSC:uc010atn.3 ArrayExpress:E7EPD8 Bgee:E7EPD8 Uniprot:E7EPD8
Length = 589
Score = 113 (44.8 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 30/112 (26%), Positives = 53/112 (47%)
Query: 527 HHPKLFVLQREDSIRVIVTSANLGAKQWNAVTNTVWWQD-FPRRCAPDYLSLFVQTPVEE 585
HH K+ +L E+ +RV++ ++NL W+ T +W +PR + S
Sbjct: 262 HHTKMMLLLYEEGLRVVIHTSNLIHADWHQKTQGIWLSPLYPRIADGTHKS--------- 312
Query: 586 INQDSRSDFTAQLASFMASLVIDVPSQAHWIVELTKYDFASAAGHLVASVPG 637
+S + F A L S++ + + PS WI + K+D + +L+ S PG
Sbjct: 313 --GESPTHFKADLISYL--MAYNAPSLKEWIDVIHKHDLSETNVYLIGSTPG 360
Score = 86 (35.3 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 36/139 (25%), Positives = 62/139 (44%)
Query: 898 SPSIRIIFPTIERVRNACDGILPSKRVLCFSEKTWQRLRNV-DILHDAIPHPHDRVGHPM 956
S + +I+P++E VR + +G P+ L +S +T ++ + H R
Sbjct: 434 SVPLYLIYPSVENVRTSLEGY-PAGGSLPYSIQTAEKQNWLHSYFHKWSAETSGRSNAMP 492
Query: 957 HVKVAWRRFQSRTDTSLGWVYCGSHNFSAAAWGRPIQTPSTIKPNGSEKTKSSSSQRLHI 1016
H+K R S + + W S N S AAWG ++ NG++ L I
Sbjct: 493 HIKTYMR--PSPDFSKIAWFLVTSANLSKAAWG-------ALEKNGTQ---------LMI 534
Query: 1017 CNYELGIVFV---FPPTEK 1032
+YELG++F+ F P ++
Sbjct: 535 RSYELGVLFLPSAFAPAKR 553
>UNIPROTKB|E2REL5 [details] [associations]
symbol:TDP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017005 "3'-tyrosyl-DNA phosphodiesterase
activity" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=IEA] [GO:0000012 "single strand break repair"
evidence=IEA] InterPro:IPR010347 Pfam:PF06087 GO:GO:0005634
GO:GO:0005737 GO:GO:0003690 GO:GO:0003697 GO:GO:0006302
GO:GO:0000012 GO:GO:0017005 GeneTree:ENSGT00390000002211 KO:K10862
PANTHER:PTHR12415 OMA:WGHLRLR CTD:55775 EMBL:AAEX03005923
RefSeq:XP_547950.2 Ensembl:ENSCAFT00000027726 GeneID:490828
KEGG:cfa:490828 Uniprot:E2REL5
Length = 609
Score = 102 (41.0 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 27/112 (24%), Positives = 51/112 (45%)
Query: 527 HHPKLFVLQREDSIRVIVTSANLGAKQWNAVTNTVWWQD-FPRRCAPDYLSLFVQTPVEE 585
HH K+ +L E+ +RV++ ++NL W+ T +W +PR + S
Sbjct: 263 HHTKMMLLLYEEGLRVVIHTSNLIHADWHQKTQGIWLSPLYPRMAQATHRS--------- 313
Query: 586 INQDSRSDFTAQLASFMASLVIDVPSQAHWIVELTKYDFASAAGHLVASVPG 637
+S + F A L S++ + + WI + ++D + +L+ S PG
Sbjct: 314 --GESATHFKADLISYL--MAYNAAPLKEWIDTIHEHDLSETNVYLIGSTPG 361
Score = 97 (39.2 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 45/171 (26%), Positives = 73/171 (42%)
Query: 901 IRIIFPTIERVRNACDGILPSKRVLCFSEKTWQRLRNV-DILHDAIPHPHDRVGHPMHVK 959
+ +I+P++E VR + +G P+ L +S +T ++ + H + R H+K
Sbjct: 438 LHLIYPSVENVRTSLEGY-PAGGSLPYSIQTAEKQNWLHSYFHKWMADTSGRSNAMPHIK 496
Query: 960 VAWRRFQSRTDTS-LGWVYCGSHNFSAAAWGRPIQTPSTIKPNGSEKTKSSSSQRLHICN 1018
R S D S + W S N S AAWG ++ NG++ L I +
Sbjct: 497 TYMR---SSPDFSQIAWFLVTSANLSKAAWG-------ALEKNGAQ---------LMIRS 537
Query: 1019 YELGIVFV---FPPTE---KQSSTGNNTSNLDDIVLPFVVPAPKYRPKDRP 1063
YELG++F+ F KQ + +P+ +P Y KDRP
Sbjct: 538 YELGVLFLPSAFGLDSFKVKQKFFSGSKEPAAAFPVPYDLPPELYGNKDRP 588
>UNIPROTKB|G3V2F4 [details] [associations]
symbol:TDP1 "Tyrosyl-DNA phosphodiesterase 1" species:9606
"Homo sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0008081 "phosphoric diester hydrolase
activity" evidence=IEA] InterPro:IPR010347 Pfam:PF06087
GO:GO:0005634 GO:GO:0006281 GO:GO:0008081 PANTHER:PTHR12415
EMBL:AL137128 HGNC:HGNC:18884 ProteinModelPortal:G3V2F4 SMR:G3V2F4
Ensembl:ENST00000555880 ArrayExpress:G3V2F4 Bgee:G3V2F4
Uniprot:G3V2F4
Length = 578
Score = 113 (44.8 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 30/112 (26%), Positives = 53/112 (47%)
Query: 527 HHPKLFVLQREDSIRVIVTSANLGAKQWNAVTNTVWWQD-FPRRCAPDYLSLFVQTPVEE 585
HH K+ +L E+ +RV++ ++NL W+ T +W +PR + S
Sbjct: 262 HHTKMMLLLYEEGLRVVIHTSNLIHADWHQKTQGIWLSPLYPRIADGTHKS--------- 312
Query: 586 INQDSRSDFTAQLASFMASLVIDVPSQAHWIVELTKYDFASAAGHLVASVPG 637
+S + F A L S++ + + PS WI + K+D + +L+ S PG
Sbjct: 313 --GESPTHFKADLISYL--MAYNAPSLKEWIDVIHKHDLSETNVYLIGSTPG 360
Score = 84 (34.6 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 34/130 (26%), Positives = 58/130 (44%)
Query: 898 SPSIRIIFPTIERVRNACDGILPSKRVLCFSEKTWQRLRNV-DILHDAIPHPHDRVGHPM 956
S + +I+P++E VR + +G P+ L +S +T ++ + H R
Sbjct: 434 SVPLYLIYPSVENVRTSLEGY-PAGGSLPYSIQTAEKQNWLHSYFHKWSAETSGRSNAMP 492
Query: 957 HVKVAWRRFQSRTDTSLGWVYCGSHNFSAAAWGRPIQTPSTIKPNGSEKTKSSSSQRLHI 1016
H+K R S + + W S N S AAWG ++ NG++ L I
Sbjct: 493 HIKTYMR--PSPDFSKIAWFLVTSANLSKAAWG-------ALEKNGTQ---------LMI 534
Query: 1017 CNYELGIVFV 1026
+YELG++F+
Sbjct: 535 RSYELGVLFL 544
>UNIPROTKB|F1SDA7 [details] [associations]
symbol:LOC100625067 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0008081 "phosphoric diester hydrolase activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR010347 Pfam:PF06087
GO:GO:0005634 GO:GO:0006281 GO:GO:0008081
GeneTree:ENSGT00390000002211 PANTHER:PTHR12415 OMA:WGHLRLR
EMBL:CU633760 Ensembl:ENSSSCT00000002701 Uniprot:F1SDA7
Length = 607
Score = 108 (43.1 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 27/111 (24%), Positives = 54/111 (48%)
Query: 527 HHPKLFVLQREDSIRVIVTSANLGAKQWNAVTNTVWWQDFPRRCAPDYLSLFVQTPVEEI 586
HH K+ +L E+ +RV++ ++NL W+ T +W +P Y + P
Sbjct: 261 HHTKMMLLLYEEGLRVVIHTSNLIHADWHQKTQGIW-------LSPLYQRI---VPGSHR 310
Query: 587 NQDSRSDFTAQLASFMASLVIDVPSQAHWIVELTKYDFASAAGHLVASVPG 637
+ +S + F A L S++++ + + WI + ++D + +L+ S PG
Sbjct: 311 SGESATHFKADLISYLSAY--NAAALKEWIDTIQEHDLSETNVYLIGSTPG 359
Score = 80 (33.2 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 40/175 (22%), Positives = 67/175 (38%)
Query: 894 QELRSPS----IRIIFPTIERVRNACDGILPSKRVLCFSEKTWQRLRNV-DILHDAIPHP 948
+E R+P + +I+P++E VR + +G + L +S +T ++ + H
Sbjct: 424 KESRTPGGAVPLHLIYPSVENVRTSLEGYPEAGGSLPYSIQTAEKQTWLHSYFHKWSAAT 483
Query: 949 HDRVGHPMHVKVAWRRFQSRTDTSLGWVYCGSHNFSAAAWGRPIQTPSTIKPNGSEKTKS 1008
R H+K R S + + W S N S AAWG ++ NGS+
Sbjct: 484 SGRSNAMPHIKTYMR--PSPDFSQIAWFLVTSANLSKAAWG-------ALEKNGSQLMIR 534
Query: 1009 SSSQRLHICNYELGIVFVFPPTEKQSSTGNNTSNLDDIVLPFVVPAPKYRPKDRP 1063
S + G+ KQ + +P+ +P Y KDRP
Sbjct: 535 SYELGVLFLPAAFGLDSF---RVKQKFFSGSQEPTASFPVPYDLPPELYGSKDRP 586
>DICTYBASE|DDB_G0273869 [details] [associations]
symbol:DDB_G0273869 "Tyrosyl-DNA phosphodiesterase 1"
species:44689 "Dictyostelium discoideum" [GO:0008081 "phosphoric
diester hydrolase activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR010347 Pfam:PF06087 dictyBase:DDB_G0273869
dictyBase:DDB_G0273125 GO:GO:0005634 GO:GO:0006281
EMBL:AAFI02000011 EMBL:AAFI02000009 GO:GO:0008081
RefSeq:XP_644551.1 RefSeq:XP_644700.1 ProteinModelPortal:Q556S0
EnsemblProtists:DDB0168041 EnsemblProtists:DDB0217348
GeneID:8618799 GeneID:8619177 KEGG:ddi:DDB_G0273125
KEGG:ddi:DDB_G0273869 InParanoid:Q556S0 OMA:QTIWFQD
ProtClustDB:CLSZ2431202 Uniprot:Q556S0
Length = 734
Score = 76 (31.8 bits), Expect = 0.00075, Sum P(5) = 0.00075
Identities = 12/15 (80%), Positives = 13/15 (86%)
Query: 975 WVYCGSHNFSAAAWG 989
WVY GSHNFS +AWG
Sbjct: 658 WVYTGSHNFSLSAWG 672
Score = 74 (31.1 bits), Expect = 0.00075, Sum P(5) = 0.00075
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 527 HHPKLFVLQREDSIRVIVTSANLGAKQWNAVTNTVWWQDFPRR 569
+H KL + D +RV++ S+N ++ T+W+QDF ++
Sbjct: 301 YHSKLMIFTFVDLVRVVIPSSNPTKFDYSGWGQTIWFQDFLKK 343
Score = 56 (24.8 bits), Expect = 0.00075, Sum P(5) = 0.00075
Identities = 15/56 (26%), Positives = 29/56 (51%)
Query: 1010 SSQRLHICNYELGIVFVFPPTEKQSSTGNNTSNLDDIV--LPFVVPAPKYRPKDRP 1063
+ ++ I N+E+G++ + P + N L D V +PF +P+ Y+P + P
Sbjct: 677 NESQVSISNFEIGVLLLNP------NPSLNDFTLPDWVRNIPFNIPSNFYKPNEVP 726
Score = 53 (23.7 bits), Expect = 0.00075, Sum P(5) = 0.00075
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 619 LTKYDFASAAGHLVASVPGIHSYRNPN 645
L +D+++ A L+ S+PGI+ N
Sbjct: 423 LDDFDYSNCAVKLITSIPGIYKLEKSN 449
Score = 41 (19.5 bits), Expect = 0.00075, Sum P(5) = 0.00075
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 2 NDSDSFFNKTNNNKRSGEN 20
N+ ++ FN NNN + N
Sbjct: 137 NNFNNNFNNNNNNNNNNNN 155
Score = 40 (19.1 bits), Expect = 0.00092, Sum P(5) = 0.00092
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 2 NDSDSFFNKTNNNKRSGEN 20
N++++ N NNNK + N
Sbjct: 156 NNNNNNNNNNNNNKNNNSN 174
Score = 40 (19.1 bits), Expect = 0.00092, Sum P(5) = 0.00092
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 2 NDSDSFFNKTNNNKRSGEN 20
N +++F N NNN + N
Sbjct: 138 NFNNNFNNNNNNNNNNNNN 156
>DICTYBASE|DDB_G0273125 [details] [associations]
symbol:DDB_G0273125 "Tyrosyl-DNA phosphodiesterase 1"
species:44689 "Dictyostelium discoideum" [GO:0008081 "phosphoric
diester hydrolase activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR010347 Pfam:PF06087 dictyBase:DDB_G0273869
dictyBase:DDB_G0273125 GO:GO:0005634 GO:GO:0006281
EMBL:AAFI02000011 EMBL:AAFI02000009 GO:GO:0008081
RefSeq:XP_644551.1 RefSeq:XP_644700.1 ProteinModelPortal:Q556S0
EnsemblProtists:DDB0168041 EnsemblProtists:DDB0217348
GeneID:8618799 GeneID:8619177 KEGG:ddi:DDB_G0273125
KEGG:ddi:DDB_G0273869 InParanoid:Q556S0 OMA:QTIWFQD
ProtClustDB:CLSZ2431202 Uniprot:Q556S0
Length = 734
Score = 76 (31.8 bits), Expect = 0.00075, Sum P(5) = 0.00075
Identities = 12/15 (80%), Positives = 13/15 (86%)
Query: 975 WVYCGSHNFSAAAWG 989
WVY GSHNFS +AWG
Sbjct: 658 WVYTGSHNFSLSAWG 672
Score = 74 (31.1 bits), Expect = 0.00075, Sum P(5) = 0.00075
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 527 HHPKLFVLQREDSIRVIVTSANLGAKQWNAVTNTVWWQDFPRR 569
+H KL + D +RV++ S+N ++ T+W+QDF ++
Sbjct: 301 YHSKLMIFTFVDLVRVVIPSSNPTKFDYSGWGQTIWFQDFLKK 343
Score = 56 (24.8 bits), Expect = 0.00075, Sum P(5) = 0.00075
Identities = 15/56 (26%), Positives = 29/56 (51%)
Query: 1010 SSQRLHICNYELGIVFVFPPTEKQSSTGNNTSNLDDIV--LPFVVPAPKYRPKDRP 1063
+ ++ I N+E+G++ + P + N L D V +PF +P+ Y+P + P
Sbjct: 677 NESQVSISNFEIGVLLLNP------NPSLNDFTLPDWVRNIPFNIPSNFYKPNEVP 726
Score = 53 (23.7 bits), Expect = 0.00075, Sum P(5) = 0.00075
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 619 LTKYDFASAAGHLVASVPGIHSYRNPN 645
L +D+++ A L+ S+PGI+ N
Sbjct: 423 LDDFDYSNCAVKLITSIPGIYKLEKSN 449
Score = 41 (19.5 bits), Expect = 0.00075, Sum P(5) = 0.00075
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 2 NDSDSFFNKTNNNKRSGEN 20
N+ ++ FN NNN + N
Sbjct: 137 NNFNNNFNNNNNNNNNNNN 155
Score = 40 (19.1 bits), Expect = 0.00092, Sum P(5) = 0.00092
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 2 NDSDSFFNKTNNNKRSGEN 20
N++++ N NNNK + N
Sbjct: 156 NNNNNNNNNNNNNKNNNSN 174
Score = 40 (19.1 bits), Expect = 0.00092, Sum P(5) = 0.00092
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 2 NDSDSFFNKTNNNKRSGEN 20
N +++F N NNN + N
Sbjct: 138 NFNNNFNNNNNNNNNNNNN 156
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.134 0.403 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1131 1060 0.00084 123 3 11 22 0.39 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 17
No. of states in DFA: 636 (68 KB)
Total size of DFA: 512 KB (2236 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 87.30u 0.10s 87.40t Elapsed: 00:00:04
Total cpu time: 87.31u 0.10s 87.41t Elapsed: 00:00:04
Start: Fri May 10 18:12:47 2013 End: Fri May 10 18:12:51 2013