BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001181
(1131 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VQM4|TYDP1_DROME Probable tyrosyl-DNA phosphodiesterase OS=Drosophila melanogaster
GN=gkt PE=2 SV=1
Length = 580
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 99/244 (40%), Gaps = 38/244 (15%)
Query: 827 GLWRLQEVLGQYRWPELQESDFSYGSSSIGSINAQFLAAFAAASGKKSLRFYDSEESDPE 886
G RL +L ++ P SSSIGS+ A + A+ SL+ ++S P
Sbjct: 360 GHARLASLLAKHAAPIDDRIPVVCQSSSIGSLGAN-VQAWIQQDFVNSLK----KDSTP- 413
Query: 887 WGCWSASQELRSPSIRIIFPTIERVRNACDGILPSKRVLCFSEKT-----WQRLRNVDIL 941
+ + P ++I+P+ V + DG+L L + + T W + D L
Sbjct: 414 -----VGKLRQMPPFKMIYPSYGNVAGSHDGML-GGGCLPYGKNTNDKQPWLK----DYL 463
Query: 942 HDAIPHPHDRVGHPMHVKVAWRRFQSRTDTSLGWVYCGSHNFSAAAWGRPIQTPSTIKPN 1001
R H+K ++ RF + D S+ W S N S AAWG S I+P
Sbjct: 464 QQWKSSDRFRSRAMPHIK-SYTRF-NLEDQSVYWFVLTSANLSKAAWGC-FNKNSNIQPC 520
Query: 1002 GSEKTKSSSSQRLHICNYELGIVFV--FPPTEKQSSTGNNTSNLDDIVLPFVVPAPKYRP 1059
L I NYE G++F+ F E GNN + LP+ VP Y P
Sbjct: 521 ------------LRIANYEAGVLFLPRFVTGEDTFPLGNNRDGVPAFPLPYDVPLTPYAP 568
Query: 1060 KDRP 1063
D+P
Sbjct: 569 DDKP 572
Score = 37.4 bits (85), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 14/118 (11%)
Query: 524 IACHHPKLFVLQRED-SIRVIVTSANLGAKQWNAVTNTVWWQDFPRRCAPDYLSLFVQTP 582
A H K+ L D S+RV++++ANL W+ T +W +P +L V
Sbjct: 244 FATSHTKMMFLGYSDGSMRVVISTANLYEDDWHNRTQGLW-------ISPKLPALPVD-- 294
Query: 583 VEEINQDSRSDFTAQLASFMASLVIDVPSQAH-WIVELTKYDFASAAGHLVASVPGIH 639
+ +S + F L ++ I SQ WI + DF++ + SVPG H
Sbjct: 295 ADTGAGESLTGFKQDLMLYLVEYKI---SQLQPWIARIRNSDFSAINVFFLGSVPGGH 349
>sp|Q9NUW8|TYDP1_HUMAN Tyrosyl-DNA phosphodiesterase 1 OS=Homo sapiens GN=TDP1 PE=1 SV=2
Length = 608
Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 12/115 (10%)
Query: 523 GIACHHPKLFVLQREDSIRVIVTSANLGAKQWNAVTNTVWWQDFPRRCAPDYLSLFVQTP 582
HH K+ +L E+ +RV++ ++NL W+ T +W +P Y + T
Sbjct: 258 AFGTHHTKMMLLLYEEGLRVVIHTSNLIHADWHQKTQGIW-------LSPLYPRIADGT- 309
Query: 583 VEEINQDSRSDFTAQLASFMASLVIDVPSQAHWIVELTKYDFASAAGHLVASVPG 637
+ +S + F A L S++ + + PS WI + K+D + +L+ S PG
Sbjct: 310 --HKSGESPTHFKADLISYL--MAYNAPSLKEWIDVIHKHDLSETNVYLIGSTPG 360
Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 73/172 (42%), Gaps = 30/172 (17%)
Query: 901 IRIIFPTIERVRNACDGILPSKRVLCFSEKTWQRLRNV-DILHDAIPHPHDRVGHPMHVK 959
+ +I+P++E VR + +G P+ L +S +T ++ + H R H+K
Sbjct: 437 LYLIYPSVENVRTSLEG-YPAGGSLPYSIQTAEKQNWLHSYFHKWSAETSGRSNAMPHIK 495
Query: 960 VAWRRFQSRTDTSLGWVYCGSHNFSAAAWGRPIQTPSTIKPNGSEKTKSSSSQRLHICNY 1019
R S + + W S N S AAWG ++ NG++ L I +Y
Sbjct: 496 TYMR--PSPDFSKIAWFLVTSANLSKAAWG-------ALEKNGTQ---------LMIRSY 537
Query: 1020 ELGIVFVFPPTE--------KQSSTGNNTSNLDDIVLPFVVPAPKYRPKDRP 1063
ELG++F+ P+ KQ + + +P+ +P Y KDRP
Sbjct: 538 ELGVLFL--PSAFGLDSFKVKQKFFAGSQEPMATFPVPYDLPPELYGSKDRP 587
>sp|Q4G056|TYDP1_RAT Tyrosyl-DNA phosphodiesterase 1 OS=Rattus norvegicus GN=Tdp1 PE=2
SV=1
Length = 609
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 54/115 (46%), Gaps = 12/115 (10%)
Query: 523 GIACHHPKLFVLQREDSIRVIVTSANLGAKQWNAVTNTVWWQDFPRRCAPDYLSLFVQTP 582
HH K+ +L E+ +RV++ ++NL + W+ T +W +P Y ++
Sbjct: 259 AFGTHHTKMMLLLYEEGLRVVIHTSNLIREDWHQKTQGIW-------LSPLYPRIYQGN- 310
Query: 583 VEEINQDSRSDFTAQLASFMASLVIDVPSQAHWIVELTKYDFASAAGHLVASVPG 637
+ +S + F A L S++ + + P WI + ++D + +L+ S PG
Sbjct: 311 --HTSGESSTHFKADLTSYL--MAYNAPPLQEWIDIIQEHDLSETNVYLIGSTPG 361
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 80/184 (43%), Gaps = 35/184 (19%)
Query: 894 QELRSPS-----IRIIFPTIERVRNACDGILPSKRVLCFSEKTWQRLRNVD-ILHDAIPH 947
+E R+P + +I+P++E VR + +G P+ L + +T ++ R + H
Sbjct: 426 EEGRTPGRSAVPLHLIYPSVENVRTSLEG-YPAGGSLPYGIQTAEKQRWLHPYFHKWSAE 484
Query: 948 PHDRVGHPMHVKVAWRRFQSRTDTSLGWVYCGSHNFSAAAWGRPIQTPSTIKPNGSEKTK 1007
R H+K R S + L W S N S AAWG ++ NG++
Sbjct: 485 TSGRSNAMPHIKTYMR--PSPDFSKLAWFLVTSANLSKAAWG-------ALEKNGAQ--- 532
Query: 1008 SSSSQRLHICNYELGIVFVFPPTE--------KQSSTGNNTSNLDDIVLPFVVPAPKYRP 1059
L I +YELG++F+ P+ KQ +++ + +P+ +P Y
Sbjct: 533 ------LMIRSYELGVLFL--PSAFGLDTFKVKQKFFSSSSEPMASFPVPYDLPPELYGS 584
Query: 1060 KDRP 1063
KDRP
Sbjct: 585 KDRP 588
>sp|Q8BJ37|TYDP1_MOUSE Tyrosyl-DNA phosphodiesterase 1 OS=Mus musculus GN=Tdp1 PE=2 SV=2
Length = 609
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 75/172 (43%), Gaps = 30/172 (17%)
Query: 901 IRIIFPTIERVRNACDGILPSKRVLCFSEKTWQRLRNV-DILHDAIPHPHDRVGHPMHVK 959
+ +I+P++E VR + +G P+ L +S +T ++ R + H R H+K
Sbjct: 438 LHLIYPSVENVRTSLEG-YPAGGSLPYSIQTAEKQRWLHSYFHKWSAETSGRSNAMPHIK 496
Query: 960 VAWRRFQSRTDTSLGWVYCGSHNFSAAAWGRPIQTPSTIKPNGSEKTKSSSSQRLHICNY 1019
R S + L W S N S AAWG ++ NG++ L I +Y
Sbjct: 497 TYMR--PSPDFSKLAWFLVTSANLSKAAWG-------ALEKNGTQ---------LMIRSY 538
Query: 1020 ELGIVFVFPPTE--------KQSSTGNNTSNLDDIVLPFVVPAPKYRPKDRP 1063
ELG++F+ P+ KQ ++ +P+ +P YR KDRP
Sbjct: 539 ELGVLFL--PSAFGLDTFKVKQKFFSSSCEPTASFPVPYDLPPELYRSKDRP 588
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 53/115 (46%), Gaps = 12/115 (10%)
Query: 523 GIACHHPKLFVLQREDSIRVIVTSANLGAKQWNAVTNTVWWQDFPRRCAPDYLSLFVQTP 582
HH K+ +L E+ +RV++ ++NL + W+ T +W +P Y + +
Sbjct: 259 AFGTHHTKMMLLLYEEGLRVVIHTSNLIREDWHQKTQGIW-------LSPLYPRIDQGS- 310
Query: 583 VEEINQDSRSDFTAQLASFMASLVIDVPSQAHWIVELTKYDFASAAGHLVASVPG 637
+S + F A L S++ + + P WI + ++D + +L+ S PG
Sbjct: 311 --HTAGESSTRFKADLTSYLTAY--NAPPLQEWIDIIQEHDLSETNVYLIGSTPG 361
>sp|Q5XVJ4|FAN1_ARATH Fanconi-associated nuclease 1 homolog OS=Arabidopsis thaliana
GN=At1g48360 PE=2 SV=2
Length = 891
Score = 40.8 bits (94), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 16/94 (17%)
Query: 684 TAADSNGTQIKKLAAFLGKSFSAHGMLKI-----LLRRNTNVPADANAVSVLVPNPDELS 738
T + NG I+ +G+ FS L+I LLR NV D NA+ V+
Sbjct: 152 TLDEDNGEAIETF--IVGRKFSDVQDLEIGGDIFLLRHPENVK-DRNAIKVI-------- 200
Query: 739 DGDCIQLGFMPRDIAKWVSPLWDIGFIRFSGFIS 772
GD LG++P+DI++ +SPL D ++F G I+
Sbjct: 201 SGDSEMLGYLPKDISQCLSPLIDDYDLKFEGTIT 234
>sp|B2UXS3|MURC_CLOBA UDP-N-acetylmuramate--L-alanine ligase OS=Clostridium botulinum
(strain Alaska E43 / Type E3) GN=murC PE=3 SV=1
Length = 460
Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 189 GFLILGIIFKEEVVLKRPRLVGTMASSGHSQGSVSSGTRSKRVFALRENDVSNPDSVFPK 248
G+ + G FKE +LK+ RL G GHS+ ++ A+ EN NP+ ++ K
Sbjct: 34 GYKVSGSDFKESEILKKLRLSGADIYIGHSEKNIKDVDLVVYTAAIPEN---NPELIYAK 90
Query: 249 LKRRDIFGRASFL 261
D+ RA FL
Sbjct: 91 ENNIDLMNRAEFL 103
>sp|Q9TXV7|TYDP1_CAEEL Probable tyrosyl-DNA phosphodiesterase OS=Caenorhabditis elegans
GN=F52C12.1 PE=3 SV=1
Length = 451
Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 19/118 (16%)
Query: 524 IACHHPKLFVLQREDS-IRVIVTSANLGAKQWNAVTNTVWWQDFPRRCAPDYLSLFVQTP 582
HH K+ +L+ ED VIV++ANL W T ++ +F + A +
Sbjct: 127 FGTHHTKMSILEDEDGRFHVIVSTANLVPDDWEFKTQQFYY-NFGVKIASGTVP------ 179
Query: 583 VEEINQDSRSDFTAQLASFMASLVIDVPSQAHWIVELTKYDFASAAGHLVASVPGIHS 640
RSDF L +++ + + W L K DF+ + L+ S PG H+
Sbjct: 180 --------RSDFQDDLLEYLSMYRNQLDT---WKQLLQKVDFSQISDRLIFSTPGYHT 226
>sp|Q12972|PP1R8_HUMAN Nuclear inhibitor of protein phosphatase 1 OS=Homo sapiens
GN=PPP1R8 PE=1 SV=2
Length = 351
Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 60 VDSLTLEPDRPYSIGRASINCDFTFDNRLVSRQHCQILFDSSERKIYVLD-----GTFL 113
++ L ++ + Y GR CDFT D++ SR H +++ ++++++D GTFL
Sbjct: 38 IEKLIIDEKKYYLFGRNPDLCDFTIDHQSCSRVHAALVYHKHLKRVFLIDLNSTHGTFL 96
>sp|Q28147|PP1R8_BOVIN Nuclear inhibitor of protein phosphatase 1 OS=Bos taurus GN=PPP1R8
PE=1 SV=1
Length = 351
Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 60 VDSLTLEPDRPYSIGRASINCDFTFDNRLVSRQHCQILFDSSERKIYVLD-----GTFL 113
++ L ++ + Y GR CDFT D++ SR H +++ ++++++D GTFL
Sbjct: 38 IEKLIIDEKKYYLFGRNPDLCDFTIDHQSCSRVHAALVYHKHLKRVFLIDLNSTHGTFL 96
>sp|Q8R3G1|PP1R8_MOUSE Nuclear inhibitor of protein phosphatase 1 OS=Mus musculus
GN=Ppp1r8 PE=1 SV=1
Length = 351
Score = 38.5 bits (88), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 60 VDSLTLEPDRPYSIGRASINCDFTFDNRLVSRQHCQILFDSSERKIYVLD-----GTFL 113
++ L ++ + Y GR CDFT D++ SR H +++ ++++++D GTFL
Sbjct: 38 IEKLIIDEKKYYLFGRNPDLCDFTIDHQSCSRVHAALVYHKHLKRVFLIDLNSTHGTFL 96
>sp|B2TI04|MURC_CLOBB UDP-N-acetylmuramate--L-alanine ligase OS=Clostridium botulinum
(strain Eklund 17B / Type B) GN=murC PE=3 SV=1
Length = 460
Score = 37.4 bits (85), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 9/101 (8%)
Query: 189 GFLILGIIFKEEVVLKRPRLVGTMASSGHSQGSVSSGTRSKRVFALRENDVSNPDSVFPK 248
G+ + G FKE +LK+ RL G GHS+ ++ A+ EN NP+ ++ K
Sbjct: 34 GYKVSGSDFKESEILKKLRLSGADIYIGHSEKNIKDVDLVVYTAAIPEN---NPELIYAK 90
Query: 249 LKRRDIFGRASFLLSQCRN------ILNSNDPVSCIQQIAN 283
++ RA FL S + I ++ +C ++N
Sbjct: 91 ENNIELMNRAEFLGSIMKGHKYNVAISGAHGKTTCTSMLSN 131
>sp|Q3URD3|SLMAP_MOUSE Sarcolemmal membrane-associated protein OS=Mus musculus GN=Slmap
PE=1 SV=2
Length = 845
Score = 37.0 bits (84), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 10/56 (17%)
Query: 68 DRPYSIGRASINC-----DFTFDNRLVSRQHCQILFDSSERKIYVLD-----GTFL 113
D P IGR+ C + TFD +++SR H + FD K Y+ D GTF+
Sbjct: 25 DEPIKIGRSVARCRPAQNNATFDCKVLSRNHALVWFDHKTSKFYLQDTKSSNGTFI 80
>sp|P0C219|SLMAP_RAT Sarcolemmal membrane-associated protein OS=Rattus norvegicus
GN=Slmap PE=2 SV=1
Length = 858
Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 10/56 (17%)
Query: 68 DRPYSIGRASINC-----DFTFDNRLVSRQHCQILFDSSERKIYVLD-----GTFL 113
D P IGR+ C + TFD +++SR H + FD K Y+ D GTF+
Sbjct: 25 DEPIKIGRSVARCRPAQNNATFDCKVLSRNHALVWFDHKTSKFYLQDTKSSNGTFI 80
>sp|Q6IUF8|L_MACHU RNA-directed RNA polymerase L OS=Machupo virus GN=L PE=3 SV=1
Length = 2209
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 78/168 (46%), Gaps = 17/168 (10%)
Query: 373 NKNATPGVKSKLLNSVDR---QNATHFGSMDKSKSLGSSCSPPGKKFYLNRLE-FMDLTS 428
++N T GVK L S+++ Q++ G + KS+GS C GK +L E + +
Sbjct: 1590 SRNFTKGVKKILAESINKSAFQSSVASGFIGFCKSMGSKCVRDGKGGFLYIKEVYSGINV 1649
Query: 429 LNYDVISL-PELLYPVESISRMFIATFTSDILW-FMSYCEIPSHLPVTIACHNTERCWST 486
++ +L P+++Y +S+++ ++ F+ ILW + S L +T AC E +ST
Sbjct: 1650 CICEICALKPKIIYCNDSLNK--VSQFSKPILWDYFS-------LVLTNACELGEWVFST 1700
Query: 487 SADKRTSVPYPNFPNLVLVFPPFPESV--AFGENCKKQGIACHHPKLF 532
+ + + N V P + G N Q I ++P LF
Sbjct: 1701 VKEPQKPLVLNNQNFFWAVKPKVVRQIEDQLGMNHVLQSIRRNYPVLF 1748
>sp|Q28623|SLMAP_RABIT Sarcolemmal membrane-associated protein OS=Oryctolagus cuniculus
GN=SLMAP PE=1 SV=2
Length = 771
Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 10/56 (17%)
Query: 68 DRPYSIGRASINC-----DFTFDNRLVSRQHCQILFDSSERKIYVLD-----GTFL 113
D P IGR+ C + TFD +++SR H + FD K Y+ D GTF+
Sbjct: 25 DEPIKIGRSVARCRPAQNNATFDCKVLSRNHALVWFDHKTGKFYLQDTKSSNGTFI 80
>sp|Q14BN4|SLMAP_HUMAN Sarcolemmal membrane-associated protein OS=Homo sapiens GN=SLMAP
PE=1 SV=1
Length = 828
Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 10/56 (17%)
Query: 68 DRPYSIGRASINC-----DFTFDNRLVSRQHCQILFDSSERKIYVLD-----GTFL 113
D P IGR+ C + TFD +++SR H + FD K Y+ D GTF+
Sbjct: 25 DEPIKIGRSVARCRPAQNNATFDCKVLSRNHALVWFDHKTGKFYLQDTKSSNGTFI 80
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 424,752,309
Number of Sequences: 539616
Number of extensions: 18310205
Number of successful extensions: 50726
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 50532
Number of HSP's gapped (non-prelim): 127
length of query: 1131
length of database: 191,569,459
effective HSP length: 128
effective length of query: 1003
effective length of database: 122,498,611
effective search space: 122866106833
effective search space used: 122866106833
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)