Query 001181
Match_columns 1131
No_of_seqs 217 out of 336
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 15:11:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001181.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001181hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jy1_A TDP1, tyrosyl-DNA phosp 100.0 3.3E-95 1.1E-99 833.1 19.7 433 398-1071 4-451 (464)
2 1q32_A TDP1P;, tyrosyl-DNA pho 100.0 7E-84 2.4E-88 748.8 15.1 415 411-1071 77-542 (544)
3 3sq7_A Tyrosyl-DNA phosphodies 100.0 1.3E-80 4.4E-85 711.0 14.7 415 413-1066 2-461 (470)
4 4h87_A Kanadaptin; FHA domain 99.5 1.6E-14 5.3E-19 141.0 7.2 83 56-174 28-119 (130)
5 1dmz_A Protein (protein kinase 99.5 5.5E-14 1.9E-18 141.0 9.2 84 61-181 18-115 (158)
6 3els_A PRE-mRNA leakage protei 99.4 1.5E-13 5.2E-18 138.3 8.1 94 59-193 46-156 (158)
7 1qu5_A Protein kinase SPK1; FH 99.4 1.4E-13 4.7E-18 141.4 7.6 84 61-181 42-139 (182)
8 1lgp_A Cell cycle checkpoint p 99.4 3E-13 1E-17 128.1 6.9 94 61-195 17-111 (116)
9 2jpe_A Nuclear inhibitor of pr 99.4 1.8E-13 6.1E-18 134.2 4.8 81 59-174 45-125 (140)
10 1gxc_A CHK2, CDS1, serine/thre 99.3 1.3E-12 4.6E-17 129.5 8.5 87 62-194 42-140 (149)
11 1uht_A Expressed protein; FHA 99.3 9E-13 3.1E-17 125.3 6.9 77 61-174 25-101 (118)
12 3elv_A PRE-mRNA leakage protei 99.3 8.6E-13 2.9E-17 138.0 6.8 83 59-176 93-191 (205)
13 3gqs_A Adenylate cyclase-like 99.3 2.9E-12 9.9E-17 119.9 8.3 76 61-174 17-92 (106)
14 2jqj_A DNA damage response pro 99.3 2.6E-12 8.9E-17 127.5 8.0 77 60-174 29-111 (151)
15 1g6g_A Protein kinase RAD53; b 99.3 3.8E-12 1.3E-16 122.9 8.7 91 60-193 15-118 (127)
16 2pie_A E3 ubiquitin-protein li 99.3 3.5E-12 1.2E-16 124.9 8.4 94 60-195 19-117 (138)
17 1mzk_A Kinase associated prote 99.3 4.4E-12 1.5E-16 124.3 6.4 78 61-174 20-109 (139)
18 2csw_A Ubiquitin ligase protei 99.3 6.8E-12 2.3E-16 123.9 7.8 84 57-177 24-111 (145)
19 3hx1_A SLR1951 protein; P74513 99.2 7.7E-12 2.6E-16 122.0 6.0 79 61-174 23-104 (131)
20 1g3g_A Protien kinase SPK1; FH 99.2 1.8E-11 6.2E-16 123.4 8.7 81 70-193 65-146 (164)
21 3va4_A Mediator of DNA damage 99.2 1.2E-11 4.2E-16 121.0 5.2 77 61-174 38-116 (132)
22 3po8_A RV0020C protein, putati 99.1 4.5E-11 1.5E-15 110.6 7.3 72 61-174 16-87 (100)
23 3kt9_A Aprataxin; FHA domain, 99.1 5E-11 1.7E-15 112.7 7.2 80 60-178 14-93 (102)
24 2xt9_B Putative signal transdu 99.1 7.3E-11 2.5E-15 112.0 8.0 71 62-174 25-95 (115)
25 1r21_A Antigen KI-67; beta san 99.1 6.3E-11 2.2E-15 114.3 5.7 73 61-174 26-98 (128)
26 3oun_A Putative uncharacterize 99.1 1.6E-10 5.6E-15 116.5 7.1 72 61-174 78-149 (157)
27 2brf_A Bifunctional polynucleo 99.0 1.9E-10 6.5E-15 110.1 7.0 80 60-178 19-99 (110)
28 2kb3_A Oxoglutarate dehydrogen 99.0 1.9E-10 6.6E-15 113.9 6.3 71 62-174 60-130 (143)
29 2kfu_A RV1827 PThr 22; FHA dom 99.0 2.3E-10 7.9E-15 115.7 6.3 70 63-174 70-139 (162)
30 1yj5_C 5' polynucleotide kinas 99.0 3.7E-10 1.3E-14 112.2 6.5 81 60-179 19-100 (143)
31 1wln_A Afadin; beta sandwich, 99.0 3.5E-10 1.2E-14 108.2 5.0 72 63-174 31-103 (120)
32 1ujx_A Polynucleotide kinase 3 99.0 2.3E-10 8E-15 110.8 3.6 82 60-180 26-108 (119)
33 4ejq_A Kinesin-like protein KI 98.9 1.3E-09 4.5E-14 109.0 8.5 76 62-174 54-133 (154)
34 2ff4_A Probable regulatory pro 98.9 9.9E-10 3.4E-14 123.0 8.2 83 48-174 289-371 (388)
35 3fm8_A Kinesin-like protein KI 98.8 3.7E-09 1.3E-13 102.8 7.8 65 70-174 49-113 (124)
36 3uv0_A Mutator 2, isoform B; F 98.8 4E-09 1.4E-13 99.5 6.0 69 60-171 12-81 (102)
37 3i6u_A CDS1, serine/threonine- 98.7 1.3E-08 4.3E-13 113.7 6.1 77 62-176 22-110 (419)
38 3huf_A DNA repair and telomere 98.5 5.7E-08 2E-12 107.3 6.0 95 61-197 14-120 (325)
39 4a0e_A YSCD, type III secretio 98.3 4.1E-07 1.4E-11 88.8 6.0 66 68-174 23-88 (123)
40 2l1i_A HLTF protein; hiran dom 98.0 4.6E-07 1.6E-11 88.2 -2.3 101 663-797 6-106 (122)
41 4egx_A Kinesin-like protein KI 97.9 1.4E-05 4.9E-10 82.3 8.2 70 67-174 89-163 (184)
42 1wv3_A Similar to DNA segregat 96.5 0.0028 9.4E-08 67.6 6.4 63 68-174 91-159 (238)
43 3k2y_A Uncharacterized protein 94.1 0.0077 2.6E-07 57.8 -0.4 79 668-770 6-84 (109)
44 3hsi_A Phosphatidylserine synt 69.6 2.9 9.9E-05 48.4 4.0 44 951-1029 358-401 (458)
45 4ggj_A Mitochondrial cardiolip 63.8 3.9 0.00013 41.8 3.2 28 953-988 120-147 (196)
46 1byr_A Protein (endonuclease); 61.1 8 0.00027 36.8 4.7 36 526-564 92-128 (155)
47 2k9x_A Tburm1, uncharacterized 59.7 3 0.0001 39.9 1.4 26 151-176 70-97 (110)
48 1byr_A Protein (endonuclease); 59.6 4.1 0.00014 38.8 2.3 26 954-987 91-116 (155)
49 2qjl_A URM1, ubiquitin-related 55.6 5.8 0.0002 36.5 2.5 27 151-177 67-95 (99)
50 1wgk_A Riken cDNA 2900073H19 p 55.5 3.1 0.00011 39.9 0.7 28 151-178 76-105 (114)
51 3dwg_C 9.5 kDa culture filtrat 52.9 6.9 0.00024 35.3 2.5 27 151-177 61-89 (93)
52 2cu3_A Unknown function protei 52.1 8.2 0.00028 32.8 2.7 27 151-177 32-60 (64)
53 2g1e_A Hypothetical protein TA 50.5 6.2 0.00021 35.0 1.8 27 151-177 58-86 (90)
54 2q5w_D Molybdopterin convertin 49.1 11 0.00036 32.6 3.0 25 151-177 49-73 (77)
55 2l52_A Methanosarcina acetivor 45.7 5.7 0.0002 36.7 0.8 31 147-177 63-95 (99)
56 1v0w_A Phospholipase D; hydrol 45.5 10 0.00036 43.8 3.1 30 525-557 164-193 (506)
57 3rpf_C Molybdopterin convertin 44.6 10 0.00034 33.1 2.1 29 143-177 42-70 (74)
58 3po0_A Small archaeal modifier 42.2 11 0.00039 33.5 2.2 27 144-177 59-85 (89)
59 1tyg_B YJBS; alpha beta barrel 41.4 13 0.00045 34.2 2.5 27 151-177 55-83 (87)
60 4ggj_A Mitochondrial cardiolip 39.2 21 0.00072 36.4 3.9 37 525-564 121-158 (196)
61 1ryj_A Unknown; beta/alpha pro 37.5 19 0.00066 31.1 2.8 25 151-177 42-66 (70)
62 1f0z_A THis protein; ubiquitin 37.3 9.1 0.00031 32.7 0.7 27 151-177 34-62 (66)
63 1vjk_A Molybdopterin convertin 36.8 12 0.00042 34.2 1.5 25 151-177 70-94 (98)
64 1fm0_D Molybdopterin convertin 36.3 17 0.00058 31.6 2.3 25 151-177 53-77 (81)
65 4gel_A Mitochondrial cardiolip 32.6 25 0.00084 35.7 3.1 15 973-987 164-178 (220)
66 1rws_A Hypothetical protein PF 31.3 11 0.00039 33.1 0.3 25 151-177 49-73 (77)
67 1v8c_A MOAD related protein; r 28.6 27 0.00091 35.5 2.5 28 151-178 55-84 (168)
68 2kl0_A Putative thiamin biosyn 28.6 20 0.0007 31.6 1.5 27 151-177 33-61 (73)
69 2hj1_A Hypothetical protein; s 27.9 16 0.00054 34.3 0.7 27 148-176 58-84 (97)
70 1v0w_A Phospholipase D; hydrol 26.7 41 0.0014 38.8 4.0 35 525-564 437-471 (506)
71 2k5p_A THis protein, thiamine- 25.0 28 0.00095 31.2 1.7 27 151-177 37-65 (78)
72 2k6p_A Uncharacterized protein 23.7 40 0.0014 30.2 2.5 30 146-177 23-52 (92)
73 3hvz_A Uncharacterized protein 22.8 54 0.0019 29.4 3.1 27 150-178 43-69 (78)
74 3hsi_A Phosphatidylserine synt 22.2 61 0.0021 37.5 4.2 37 525-564 361-398 (458)
75 2ca6_A RAN GTPase-activating p 21.2 28 0.00097 37.6 1.2 10 1068-1077 324-333 (386)
No 1
>1jy1_A TDP1, tyrosyl-DNA phosphodiesterase; PLD superfamily, hydrolase; 1.69A {Homo sapiens} SCOP: d.136.1.3 d.136.1.3 PDB: 1rff_A* 1mu9_A 1nop_A 1mu7_A* 1rfi_A* 1rg1_A* 1rg2_A* 1rgt_A* 1rgu_A* 1rh0_A* 1qzq_A
Probab=100.00 E-value=3.3e-95 Score=833.09 Aligned_cols=433 Identities=22% Similarity=0.378 Sum_probs=336.7
Q ss_pred CCcccCccCCCCCCCCCceEEEEecccCCCCCCCCccccccccCC-chhHHHHHHhhcccCHHHHhhhcC-CCCCccEEE
Q 001181 398 SMDKSKSLGSSCSPPGKKFYLNRLEFMDLTSLNYDVISLPELLYP-VESISRMFIATFTSDILWFMSYCE-IPSHLPVTI 475 (1131)
Q Consensus 398 ~~~~~kt~~~~~~~~gspFyLnrI~~l~~~~nn~~tISL~DLL~p-~g~L~~allfnFm~DidWLLs~f~-~~r~vpVtI 475 (1131)
.+..++||...|...+.+||||+|++++... |.++|+|+|||++ .|+|++||+||||+|++|||++|+ ..+++||+|
T Consensus 4 ~~~~~~~~~~~~~~~p~~~~l~~i~~~~~~~-n~~~itl~diL~~~~g~l~~a~~~nf~~D~~WLl~~~~~~~~~~~v~i 82 (464)
T 1jy1_A 4 PGEGQDIWDMLDKGNPFQFYLTRVSGVKPKY-NSGALHIKDILSPLFGTLVSSAQFNYCFDVDWLVKQYPPEFRKKPILL 82 (464)
T ss_dssp TTTTCCGGGTSCTTCSSCEEEBCCTTSCGGG-GTTCBCHHHHTSGGGCCEEEEEEECSCBCHHHHHHHSCGGGTTSCEEE
T ss_pred cccccchhhhhcccCCceEEEEeecCCCccc-CCCceeHHHHhCCccccHHHHHhHHhHHhHHHHHhhCcccccCCcEEE
Confidence 4667899999999999999999999999554 5789999999995 368999999999999999999998 357889999
Q ss_pred EecCCccccccCcCCcCCCCCCCCCCeEEEcCCCCccccccccccCCCccccccceEEeeeCCceEEEEeCCCCChhhhc
Q 001181 476 ACHNTERCWSTSADKRTSVPYPNFPNLVLVFPPFPESVAFGENCKKQGIACHHPKLFVLQREDSIRVIVTSANLGAKQWN 555 (1131)
Q Consensus 476 v~h~~e~~ws~~~~~rl~~~~~~~pNV~li~PpMPe~IpFG~dr~~~g~GcHHSKMMLL~Y~D~LRVVI~TANLi~~DW~ 555 (1131)
|.+..... ..++..++..+|||++|+|||| ++|| |||||||||+|+|+||||||||||+++||+
T Consensus 83 v~g~~~~~-----~~~l~~~~~~~~nv~~~~p~mp--~~fG---------thHsKmmiL~y~~glRVVI~TANL~~~DW~ 146 (464)
T 1jy1_A 83 VHGDKREA-----KAHLHAQAKPYENISLCQAKLD--IAFG---------THHTKMMLLLYEEGLRVVIHTSNLIHADWH 146 (464)
T ss_dssp EECCCHHH-----HHHHHHHHTTCTTEEEEECCCC--STTC---------CBCCCEEEEEESSCEEEEEECCCBSGGGGT
T ss_pred EeCCCccc-----chhhHHhhccCCCeEEEeCCCC--Cccc---------ccchhhheeecCCceEEEEeCCCCChhHhc
Confidence 86643221 1223334567999999999999 4677 999999999999999999999999999999
Q ss_pred ccccEEEEec-CCCCCCCCccccccCCCcccccCCCCCcHHHHHHHHHHHhcCCCCchhHHHHhhccccccccceEEEEe
Q 001181 556 AVTNTVWWQD-FPRRCAPDYLSLFVQTPVEEINQDSRSDFTAQLASFMASLVIDVPSQAHWIVELTKYDFASAAGHLVAS 634 (1131)
Q Consensus 556 ~~TQ~VWiqD-FPrl~~~d~s~~~~~~s~gE~~~~s~sdFk~dL~~YL~Sy~~~~Psl~~wI~~L~kyDFS~akV~LVaS 634 (1131)
++||+||+|| ||+++.... ...+++++|+++|++||++|+. |.++.|++.|++||||.++|+||+|
T Consensus 147 ~~tQ~vW~sd~lP~~~~~~~-----------~~~~~~~~Fk~dL~~yL~ay~~--~~~~~~i~~L~~~DFS~~~v~LVaS 213 (464)
T 1jy1_A 147 QKTQGIWLSPLYPRIADGTH-----------KSGESPTHFKANLISYLTAYNA--PSLKEWIDVIHKHDLSETNVYLIGS 213 (464)
T ss_dssp SSBCEEEECCCBCBCCTTCC-----------CCCCCTTCHHHHHHHHHHTTCC--GGGHHHHHHHHTBCCTTCCSEEEEE
T ss_pred cccceEEecccCcCCCcccc-----------ccCCCCCchHHHHHHHHHHhCC--chhHHHHHHHHhcCCcccCcEEEEe
Confidence 9999999999 798875321 1135778999999999999974 5678999999999999999999999
Q ss_pred cCCcccCCCCCCccCCCCCCCCCCcccccCCccccceeeeeeccccccccccCCchhHHHHHHHHhccccccchhhhhhh
Q 001181 635 VPGIHSYRNPNLSESTYSKPVDHGAIWSSDGKFLGSVETSVVGLSHLFRTAADSNGTQIKKLAAFLGKSFSAHGMLKILL 714 (1131)
Q Consensus 635 VPG~H~g~~~~~~es~~~~~~~~~~~~~~~~~~~g~~~~s~~G~sH~f~~~~D~ng~~Lk~la~~l~~~~~~~g~~~~~l 714 (1131)
|||+|.+.+.. .| | |. +|++ + |
T Consensus 214 vPG~h~~~~~~----~~-------------------------G--~~----------~L~~---~--------------L 235 (464)
T 1jy1_A 214 TPGRFQGSQKD----NW-------------------------G--HF----------RLKK---L--------------L 235 (464)
T ss_dssp CSEEEEGGGGG----GS-------------------------H--HH----------HHHH---H--------------H
T ss_pred CCcCCcCCcch----hh-------------------------h--HH----------HHHH---H--------------H
Confidence 99999975321 23 4 43 4433 2 3
Q ss_pred hcCCCCCCCccccccccCCCCCCCCCcccccCCCccccccccCCcccccccccccccchHHHHHHHhhccchheeeeecc
Q 001181 715 RRNTNVPADANAVSVLVPNPDELSDGDCIQLGFMPRDIAKWVSPLWDIGFIRFSGFISRDEVLAAALEGISKKVQLILHV 794 (1131)
Q Consensus 715 ~rn~~ip~d~nav~~~v~~~d~~s~~~~~~~gf~~~~~a~~~s~l~d~g~~~~~g~~~p~~~l~~a~g~~~~k~ql~l~v 794 (1131)
+++...
T Consensus 236 ~~~~~~-------------------------------------------------------------------------- 241 (464)
T 1jy1_A 236 KDHASS-------------------------------------------------------------------------- 241 (464)
T ss_dssp HHHC----------------------------------------------------------------------------
T ss_pred HHhccC--------------------------------------------------------------------------
Confidence 332100
Q ss_pred cCCCCcchhhhhHHHHHHHhhhhhHHHHHhhcCchhhhhhhcccCCCCCcccceEEeeccccccc---HHHHHH-HHHhc
Q 001181 795 SQGPKFSDISKMMQIEHVVALSSLIASIQRCRGLWRLQEVLGQYRWPELQESDFSYGSSSIGSIN---AQFLAA-FAAAS 870 (1131)
Q Consensus 795 ~~g~~~~~~~~~~~~~~~~~~csl~~s~~r~~GL~rlq~vl~~~~wp~~~e~DiVyQ~SSIGSL~---~~wL~~-F~aa~ 870 (1131)
.|.....+|+||+||||||+ .+||++ |+.++
T Consensus 242 ---------------------------------------------~~~~~~~~i~~Q~SSIGslg~~~~~Wl~~~f~~sl 276 (464)
T 1jy1_A 242 ---------------------------------------------MPNAESWPVVGQFSSVGSLGADESKWLCSEFKESM 276 (464)
T ss_dssp ------------------------------------------------CCSCCEEEECSCBCCCCSSTTTTTTTTHHHHH
T ss_pred ---------------------------------------------CCccCCCcEEEEeecccccCcchhHHHHHHHHHHh
Confidence 01113456999999999996 589964 87443
Q ss_pred CCCccccccCCCCCCcccccccccccCCCCeEEEcCCHHHHhhcCCCCCCCceeeeeccccccccC-ccccccccccCCC
Q 001181 871 GKKSLRFYDSEESDPEWGCWSASQELRSPSIRIIFPTIERVRNACDGILPSKRVLCFSEKTWQRLR-NVDILHDAIPHPH 949 (1131)
Q Consensus 871 G~~~~~~~~s~~s~pe~~~~t~~~e~~~p~~rIIFPT~e~Vr~S~~G~~gGgsi~Cf~~k~W~~~~-pr~ifhD~~~~~s 949 (1131)
...+. ++ ...+...++++|||||+++||+|.+|+.+||+ +|++.++|++.. ++.+||+|.+..+
T Consensus 277 ~~~~~------~~--------~~~~~~~~~~~iifPT~e~Vr~S~~G~~~ggs-i~~~~~~~~~~~~l~~~l~~w~~~~~ 341 (464)
T 1jy1_A 277 LTLGK------ES--------KTPGKSSVPLYLIYPSVENVRTSLEGYPAGGS-LPYSIQTAEKQNWLHSYFHKWSAETS 341 (464)
T ss_dssp TCCC-----------------------CCCEEEECCBHHHHHTSSSCGGGGGG-SCCCHHHHTTCGGGGGGEECCCCGGG
T ss_pred hhhcc------cc--------cccccCCCceEEEcCCHHHHHhcccccCCcce-eeccchhhhhhhhhHHHHHHhccCcc
Confidence 32110 00 11223468999999999999999999998875 466777887663 7899999998889
Q ss_pred CCCCCCcceEEEEeeecCCCCCceeEEEEcccccchhhcCCCccCCCCCCCCCCCccCCCCCCceeEeeeeeeEEEeCCC
Q 001181 950 DRVGHPMHVKVAWRRFQSRTDTSLGWVYCGSHNFSAAAWGRPIQTPSTIKPNGSEKTKSSSSQRLHICNYELGIVFVFPP 1029 (1131)
Q Consensus 950 ~R~galPHiKty~Rrf~s~~~~~igWvYVGSANLSkAAWG~l~knr~~~Ks~~~~~~~ss~~~qL~IrNYELGVLfp~P~ 1029 (1131)
+|.++|||||||+| +. ++...++|+||||||||+||||+++++ +++|+|||||||||| +|+
T Consensus 342 ~R~~a~pHiKty~r-~~-~~~~~~~W~lltSaNLSkaAWG~~~k~----------------~~~l~I~nyElGVl~-~P~ 402 (464)
T 1jy1_A 342 GRSNAMPHIKTYMR-PS-PDFSKIAWFLVTSANLSKAAWGALEKN----------------GTQLMIRSYELGVLF-LPS 402 (464)
T ss_dssp TCTTSCBCCEEEEE-EC-TTSSEEEEEEEESCCBSHHHHCEEETT----------------TTEEEECSBEEEEEE-CGG
T ss_pred CCCCcCCceeeEEe-cC-CCCCeecEEEEccccCCHHHhCccccC----------------CCceeEeeeeeeEEE-ecc
Confidence 99999999999998 43 344589999999999999999999864 479999999999999 554
Q ss_pred CCCCC-------CCCCCCCCCCceeeecccCCCCCCCCCCCcchhHhHH
Q 001181 1030 TEKQS-------STGNNTSNLDDIVLPFVVPAPKYRPKDRPATAQAMRE 1071 (1131)
Q Consensus 1030 ~~~~~-------~~~~~~~~~~~~pvPfdlP~~~Y~~~D~PW~~~a~~e 1071 (1131)
..... ++.........+||||++|+++|+++|+||++++.|+
T Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~vPy~lP~~~Y~~~D~Pw~~~~~~~ 451 (464)
T 1jy1_A 403 ALGLDSFKVKQKFFAGSQEPMATFPVPYDLPPELYGSKDRPWIWNIPYV 451 (464)
T ss_dssp GGTCSCEEEC-----------CEECCSSCSSCCBCCTTCCBCCTTSCBC
T ss_pred cccccccccCccccccccCcccceeecCCCCCcCCCCCCCCeeCCCCCC
Confidence 31110 1111122345799999999999999999999987654
No 2
>1q32_A TDP1P;, tyrosyl-DNA phosphodiesterase; DNA repair, replication, transcription, hydrolase, replication,transcription, hydrolase; 2.03A {Saccharomyces cerevisiae} SCOP: d.136.1.3 d.136.1.3
Probab=100.00 E-value=7e-84 Score=748.82 Aligned_cols=415 Identities=17% Similarity=0.204 Sum_probs=292.2
Q ss_pred CCCCceEEEEecccCCCC---CCCCccccccccCCchhHHHHHHhhcccCHHHHhhhcCCCCCccEEEEecCCccccccC
Q 001181 411 PPGKKFYLNRLEFMDLTS---LNYDVISLPELLYPVESISRMFIATFTSDILWFMSYCEIPSHLPVTIACHNTERCWSTS 487 (1131)
Q Consensus 411 ~~gspFyLnrI~~l~~~~---nn~~tISL~DLL~p~g~L~~allfnFm~DidWLLs~f~~~r~vpVtIv~h~~e~~ws~~ 487 (1131)
..++||+|++++.++... .|.++|+|+|||++. +|++||+||||+|++|||++|+.. .+||+||.+. |+.+
T Consensus 77 ~~~spf~L~~~~~~~~~~~~~~n~~~isl~dlL~~~-~l~~a~~~nF~~Di~WLl~~~~~~-~~~v~iv~g~----~~~~ 150 (544)
T 1q32_A 77 AKGAVFKLMKSDFYEREDFMGEVEDMITLKDIFGTE-TLKRSILFSFQYELDFLLRQFHQN-VENITIVGQK----GTIM 150 (544)
T ss_dssp --CCEEEEECCTTTTCCC-------EECHHHHHCCT-TEEEEEEECSCEEHHHHHTTSCTT-CCEEEEEEET----TCEE
T ss_pred CCCCCeEEEEecccCcccccCCCCCceeHHHHcCCc-hHHHHHHHHHHHhHHHHHhhCccc-CCcEEEEecC----CcCC
Confidence 578999999999998753 467999999999973 799999999999999999999832 2299998653 2222
Q ss_pred cCCcCCC--C-CCCCCCeEEEcCCCCccccccccccCCCccccccceEEeeeCCc-eEEEEeCCCCChhhhcccccEEEE
Q 001181 488 ADKRTSV--P-YPNFPNLVLVFPPFPESVAFGENCKKQGIACHHPKLFVLQREDS-IRVIVTSANLGAKQWNAVTNTVWW 563 (1131)
Q Consensus 488 ~~~rl~~--~-~~~~pNV~li~PpMPe~IpFG~dr~~~g~GcHHSKMMLL~Y~D~-LRVVI~TANLi~~DW~~~TQ~VWi 563 (1131)
++.+..+ . ...+|||++|+|+|| + || |||||||||+|+|+ ||||||||||+++||+++||+||+
T Consensus 151 ~~~r~~~~~~~~~~~~nv~l~~p~mp--~-fG---------thHSKmmlL~y~dg~lRVVI~TANLi~~DW~~~tQ~vW~ 218 (544)
T 1q32_A 151 PIEARAMDATLAVILKKVKLIEITMP--P-FA---------SHHTKLIINFYDNGECKIFLPSNNFTSMETNLPQQVCWC 218 (544)
T ss_dssp CCCGGGCCHHHHHHHTTEEEEEECCC--T-TC---------CBCCCEEEEEESTTEEEEEEESSCBSHHHHHSSBCEEEE
T ss_pred chhhhhhhHHhhccCCCeEEEeCCCC--C-CC---------CCCceeEEEEecCCCEEEEEeCCCCChHHhccccceEEE
Confidence 2222221 1 123789999999999 3 77 99999999999986 999999999999999999999999
Q ss_pred ecCCCCCCCCccccccCCCcccccCCCCCcHHHHHHHHHHHhcCCCCchhHH-HHhhcccccccc-ceEEEEecCCcccC
Q 001181 564 QDFPRRCAPDYLSLFVQTPVEEINQDSRSDFTAQLASFMASLVIDVPSQAHW-IVELTKYDFASA-AGHLVASVPGIHSY 641 (1131)
Q Consensus 564 qDFPrl~~~d~s~~~~~~s~gE~~~~s~sdFk~dL~~YL~Sy~~~~Psl~~w-I~~L~kyDFS~a-kV~LVaSVPG~H~g 641 (1131)
||| ++... .+.+++|+.+|++||++|+. |.+..| ++.|++||||.+ +|+||+||||+|.+
T Consensus 219 sp~--lp~~s--------------~g~~~~Fk~dL~~yL~ay~~--~~l~~~ii~~l~~~DFS~~~~v~lV~SvPG~h~~ 280 (544)
T 1q32_A 219 SPL--LKIGK--------------EGLPVPFKRSLIEYLNSYHL--KDIDELITKSVEEVNFAPLSELEFVYSTPSKFQS 280 (544)
T ss_dssp CCC--EEECC--------------CSSCCHHHHHHHHHHHTTCC--HHHHHHTHHHHHTEECGGGTTCEEEEECCCTTSC
T ss_pred CCc--ccccC--------------CCCCCchHHHHHHHHHHcCC--cccchHHHHHHHhcCcccCCceEEEEecCCccCC
Confidence 964 33210 13468999999999999975 567889 999999999999 99999999999975
Q ss_pred CCCCCccCCCCCCCCCCcccccCCccccceeeeeeccccccccccCCchhHHHHHHHHhccccccchhhhhhhhcCCCCC
Q 001181 642 RNPNLSESTYSKPVDHGAIWSSDGKFLGSVETSVVGLSHLFRTAADSNGTQIKKLAAFLGKSFSAHGMLKILLRRNTNVP 721 (1131)
Q Consensus 642 ~~~~~~es~~~~~~~~~~~~~~~~~~~g~~~~s~~G~sH~f~~~~D~ng~~Lk~la~~l~~~~~~~g~~~~~l~rn~~ip 721 (1131)
. | |+ +|+++ |+++.
T Consensus 281 ~----------------------------------G--~~----------~L~~~-----------------L~~~~--- 294 (544)
T 1q32_A 281 S----------------------------------G--LL----------SFYNK-----------------LEKLS--- 294 (544)
T ss_dssp C----------------------------------H--HH----------HHHHH-----------------HHHTC---
T ss_pred c----------------------------------c--HH----------HHHHH-----------------HHHhh---
Confidence 1 5 65 55552 33321
Q ss_pred CCccccccccCCCCCCCCCcccccCCCccccccccCCcccccccccccccchHHHHHHHhhccchheeeeecccCCCCcc
Q 001181 722 ADANAVSVLVPNPDELSDGDCIQLGFMPRDIAKWVSPLWDIGFIRFSGFISRDEVLAAALEGISKKVQLILHVSQGPKFS 801 (1131)
Q Consensus 722 ~d~nav~~~v~~~d~~s~~~~~~~gf~~~~~a~~~s~l~d~g~~~~~g~~~p~~~l~~a~g~~~~k~ql~l~v~~g~~~~ 801 (1131)
+|
T Consensus 295 ~~------------------------------------------------------------------------------ 296 (544)
T 1q32_A 295 AG------------------------------------------------------------------------------ 296 (544)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred hhhhhHHHHHHHhhhhhHHHHHhhcCchhhhhhhcccCCCCCcccceEEeeccccc-cc-HHHHHHHHH----h-cCCCc
Q 001181 802 DISKMMQIEHVVALSSLIASIQRCRGLWRLQEVLGQYRWPELQESDFSYGSSSIGS-IN-AQFLAAFAA----A-SGKKS 874 (1131)
Q Consensus 802 ~~~~~~~~~~~~~~csl~~s~~r~~GL~rlq~vl~~~~wp~~~e~DiVyQ~SSIGS-L~-~~wL~~F~a----a-~G~~~ 874 (1131)
+ . ....+.+||||+||||| ++ ++||..|.. + .|-
T Consensus 297 --------------------------~----------~-~~~~~~~iv~Q~SSIGs~l~~~~Wl~~f~~~l~~~~~g~-- 337 (544)
T 1q32_A 297 --------------------------T----------S-ASDTAKHYLCQTSSIGTSLSRARDENLWTHLMIPLFTGI-- 337 (544)
T ss_dssp -----------------------------------------CCEEEEEEECSBBCCCSCSSSCCCHHHHTHHHHHHTS--
T ss_pred --------------------------C----------C-CCCCCCcEEEEecccccccCcchhHHHHHHHHhhhhccc--
Confidence 0 0 00113579999999998 76 688866642 1 221
Q ss_pred cccccCCCCCCcccc-cccc-------cccCCCCeEEEcCCHHHHhhcCCCCCCCceeee-ec-----cccccccCcccc
Q 001181 875 LRFYDSEESDPEWGC-WSAS-------QELRSPSIRIIFPTIERVRNACDGILPSKRVLC-FS-----EKTWQRLRNVDI 940 (1131)
Q Consensus 875 ~~~~~s~~s~pe~~~-~t~~-------~e~~~p~~rIIFPT~e~Vr~S~~G~~gGgsi~C-f~-----~k~W~~~~pr~i 940 (1131)
..... ++.+...+ .... .+...++++|||||+++||+|.+|+.+||+|+| ++ +++|.+ .+
T Consensus 338 -~~~~~-~~~~~~~k~~~~~~~~l~~~~~~~~~~~~IIfPT~e~Vr~S~~G~~~Ggsi~~~~~~~~~~~~~~l~----~~ 411 (544)
T 1q32_A 338 -MSPPA-KDTAGRKKAEILPTNSLINEYSQRKIKPYIIFPTEQEFVTSPLKWSSSGWFHFQYLQKKSYYEMLRN----KF 411 (544)
T ss_dssp -CCCC------------CCCHHHHHHHHHHHTEEEEEECCBSGGGTTSTTGGGGGGGCBCCCGGGHHHHHHHHH----TS
T ss_pred -cccCc-ccccccccccccccchhcccccccCCCceEEcCCHHHHhhcccccCccceEEeccchhhhhhhHHHh----hh
Confidence 10000 00000000 0000 001257899999999999999999999987765 22 224553 35
Q ss_pred cccccc----CCCCCCCCCcceEEEEeeec------C--CCCCceeEEEEcccccchhhcCCCccCCCCCCCCCCCccCC
Q 001181 941 LHDAIP----HPHDRVGHPMHVKVAWRRFQ------S--RTDTSLGWVYCGSHNFSAAAWGRPIQTPSTIKPNGSEKTKS 1008 (1131)
Q Consensus 941 fhD~~~----~~s~R~galPHiKty~Rrf~------s--~~~~~igWvYVGSANLSkAAWG~l~knr~~~Ks~~~~~~~s 1008 (1131)
++.|.. ..++|.++|||||||+|... + ++...++|+||||||||+||||++++
T Consensus 412 ~~~w~~~~~~~~s~R~~a~PHiKty~r~~~~~~~~~~~~~~~~~i~W~lltSaNLSkaAWG~~~k--------------- 476 (544)
T 1q32_A 412 KVFYKQDPAMVTRRRGTTPAHSKFYMHCATNSAGPCDASQVFKELEWCLYTSANLSQTAWGTVSR--------------- 476 (544)
T ss_dssp CCEEECCTTTSCTTTTTCCBCCEEEEEEEECC-------CTTSEESEEEEESCCBSHHHHCCSSS---------------
T ss_pred hhhccCCCccccCCCCCccCceEEEEeeccccccccccCCCccceeEEEEccccCCHHHhhhhhc---------------
Confidence 555554 56799999999999998531 1 33458999999999999999999752
Q ss_pred CCCCceeEeeeeeeEEEeCC---CC--CCCCCCCC----CCCCCCceeeecccCCCCCCCCCCCcchhHhHH
Q 001181 1009 SSSQRLHICNYELGIVFVFP---PT--EKQSSTGN----NTSNLDDIVLPFVVPAPKYRPKDRPATAQAMRE 1071 (1131)
Q Consensus 1009 s~~~qL~IrNYELGVLfp~P---~~--~~~~~~~~----~~~~~~~~pvPfdlP~~~Y~~~D~PW~~~a~~e 1071 (1131)
+|+|||||||||.. .. .+.+++.. +......+||||++|+++|+++|+||+.+..|+
T Consensus 477 ------~irnyElGVL~P~~~~~~~~~~~~p~~~~d~~~~~~~~~~~~vPydlP~~~Y~~~D~Pw~~~~~~~ 542 (544)
T 1q32_A 477 ------KPRNYEAGVLYHSRRLANTRKVTCRTFTRDRRGCAGNPTHVAVPFTLPVIPYDLAEDECFCLARHE 542 (544)
T ss_dssp ------CCSSBEEEEEEEGGGC---CCEEEEEGGGC-------CCSEEESSCSSCEECCTTTCCBCCC----
T ss_pred ------cccceEeEEEecccccccccceecccccccCcccccCcccccccCCCCcccCCCCCCCcccccccc
Confidence 59999999999632 11 23333321 112235799999999999999999999987765
No 3
>3sq7_A Tyrosyl-DNA phosphodiesterase 1; DNA binding, nuclear, hydrolase; 2.00A {Saccharomyces cerevisiae} PDB: 3sq5_A 3sq8_A* 3sq3_A
Probab=100.00 E-value=1.3e-80 Score=711.03 Aligned_cols=415 Identities=17% Similarity=0.204 Sum_probs=291.8
Q ss_pred CCceEEEEecccCCC---CCCCCccccccccCCchhHHHHHHhhcccCHHHHhhhcCCCCCccEEEEecCCccccccCcC
Q 001181 413 GKKFYLNRLEFMDLT---SLNYDVISLPELLYPVESISRMFIATFTSDILWFMSYCEIPSHLPVTIACHNTERCWSTSAD 489 (1131)
Q Consensus 413 gspFyLnrI~~l~~~---~nn~~tISL~DLL~p~g~L~~allfnFm~DidWLLs~f~~~r~vpVtIv~h~~e~~ws~~~~ 489 (1131)
|.+|+|+++++|+.+ ..|.++|+|+|||++. +|++||+||||+|++|||++|+.. .+|++|+++ ++.|+....
T Consensus 2 ~~~fkL~~~~~y~~~~~~~~n~d~ItL~DlL~~~-~L~~avlfnF~~Di~WLl~~~~~~-~~~v~iv~~--~g~~~~~~~ 77 (470)
T 3sq7_A 2 GAVFKLMKSDFYEREDFMGEVEDMITLKDIFGTE-TLKRSILFSFQYELDFLLRQFHQN-VENITIVGQ--KGTIMPIEA 77 (470)
T ss_dssp CCEEEEECCTTTSCCC-------EECHHHHHCCT-TEEEEEEECSCEEHHHHHTTSCTT-CCEEEEEEE--TTSEECCCG
T ss_pred CCceEEEeecCcCccccccCCCCceeHHHhcCCc-hHHHHHhhhhhhcHHHHHhhCccc-cCceEEEEe--CCcccccch
Confidence 458999999999965 3468999999999975 799999999999999999999953 358888753 233332111
Q ss_pred CcCC-CCCCCCCCeEEEcCCCCccccccccccCCCccccccceEEeeeCC-ceEEEEeCCCCChhhhcccccEEEEecCC
Q 001181 490 KRTS-VPYPNFPNLVLVFPPFPESVAFGENCKKQGIACHHPKLFVLQRED-SIRVIVTSANLGAKQWNAVTNTVWWQDFP 567 (1131)
Q Consensus 490 ~rl~-~~~~~~pNV~li~PpMPe~IpFG~dr~~~g~GcHHSKMMLL~Y~D-~LRVVI~TANLi~~DW~~~TQ~VWiqDFP 567 (1131)
.++. .....+||+++|.|+|| ||| |||||||||+|+| +||||||||||+++||+..||++| |||
T Consensus 78 ~~~~~~~~~~~~nv~~i~~~mP---~fG---------thHsKmmlL~y~dg~~RVvI~TANl~~~Dw~~~tq~~W--~~P 143 (470)
T 3sq7_A 78 RAMDATLAVILKKVKLIEITMP---PFA---------SHHTKLIINFYDNGECKIFLPSNNFTSMETNLPQQVCW--CSP 143 (470)
T ss_dssp GGCCHHHHHHHTTEEEEEECCC---TTC---------CBCCCEEEEEETTSEEEEEEESSCBSHHHHHSSBCEEE--ECC
T ss_pred hhhhHHHHhhcCCceEEecCCC---CcC---------CccceeEEEEecCCCEEEEEecCCCChhhhcccceEEE--Ecc
Confidence 1110 01234689999999999 587 9999999999976 599999999999999999999999 569
Q ss_pred CCCCCCccccccCCCcccccCCCCCcHHHHHHHHHHHhcCCCCch-hHHHHhhccccccccc-eEEEEecCCcccCCCCC
Q 001181 568 RRCAPDYLSLFVQTPVEEINQDSRSDFTAQLASFMASLVIDVPSQ-AHWIVELTKYDFASAA-GHLVASVPGIHSYRNPN 645 (1131)
Q Consensus 568 rl~~~d~s~~~~~~s~gE~~~~s~sdFk~dL~~YL~Sy~~~~Psl-~~wI~~L~kyDFS~ak-V~LVaSVPG~H~g~~~~ 645 (1131)
+++.++ ...+++|+++|++||++|+. |.+ +.|++.|++||||.++ |+||+||||+|.
T Consensus 144 ~l~~~~--------------~~~~s~Fk~dL~~yL~~y~~--~~l~~~~i~~l~~~DFS~~~~v~lV~SvPG~~~----- 202 (470)
T 3sq7_A 144 LLKIGK--------------EGLPVPFKRSLIEYLNSYHL--KDIDELITKSVEEVNFAPLSELEFVYSTPSKFQ----- 202 (470)
T ss_dssp CEEECC--------------CCSCCHHHHHHHHHHHTTCC--HHHHHHTHHHHHTEECGGGTTCEEEEECCCTTS-----
T ss_pred CCcCCC--------------CCCCCccHHHHHHHHHHhCC--chhHHHHHHHHHhCCCCCCCcEEEEEecCCCCc-----
Confidence 987321 12346999999999999975 445 7999999999999995 999999999984
Q ss_pred CccCCCCCCCCCCcccccCCccccceeeeeeccccccccccCCchhHHHHHHHHhccccccchhhhhhhhcCCCCCCCcc
Q 001181 646 LSESTYSKPVDHGAIWSSDGKFLGSVETSVVGLSHLFRTAADSNGTQIKKLAAFLGKSFSAHGMLKILLRRNTNVPADAN 725 (1131)
Q Consensus 646 ~~es~~~~~~~~~~~~~~~~~~~g~~~~s~~G~sH~f~~~~D~ng~~Lk~la~~l~~~~~~~g~~~~~l~rn~~ip~d~n 725 (1131)
.| | |+ +|+++ |+++...+
T Consensus 203 ----~~-------------------------G--~~----------~L~~~-----------------L~~~~~~~---- 220 (470)
T 3sq7_A 203 ----SS-------------------------G--LL----------SFYNK-----------------LEKLSAGT---- 220 (470)
T ss_dssp ----CC-------------------------H--HH----------HHHHH-----------------HHHHTTTC----
T ss_pred ----cc-------------------------h--HH----------HHHHH-----------------HHHhccCC----
Confidence 12 5 65 55552 23321000
Q ss_pred ccccccCCCCCCCCCcccccCCCccccccccCCcccccccccccccchHHHHHHHhhccchheeeeecccCCCCcchhhh
Q 001181 726 AVSVLVPNPDELSDGDCIQLGFMPRDIAKWVSPLWDIGFIRFSGFISRDEVLAAALEGISKKVQLILHVSQGPKFSDISK 805 (1131)
Q Consensus 726 av~~~v~~~d~~s~~~~~~~gf~~~~~a~~~s~l~d~g~~~~~g~~~p~~~l~~a~g~~~~k~ql~l~v~~g~~~~~~~~ 805 (1131)
T Consensus 221 -------------------------------------------------------------------------------- 220 (470)
T 3sq7_A 221 -------------------------------------------------------------------------------- 220 (470)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHhhhhhHHHHHhhcCchhhhhhhcccCCCCCcccceEEeeccccc-ccH----HHHHH-HH-HhcCCCcc-cc
Q 001181 806 MMQIEHVVALSSLIASIQRCRGLWRLQEVLGQYRWPELQESDFSYGSSSIGS-INA----QFLAA-FA-AASGKKSL-RF 877 (1131)
Q Consensus 806 ~~~~~~~~~~csl~~s~~r~~GL~rlq~vl~~~~wp~~~e~DiVyQ~SSIGS-L~~----~wL~~-F~-aa~G~~~~-~~ 877 (1131)
-+......|+||+||||+ |+. +|+.. |. ++.|.... ..
T Consensus 221 ----------------------------------~~~~~~~~iv~Q~SSIGs~l~~~~~~~~f~~~l~~~lsg~~~~~~~ 266 (470)
T 3sq7_A 221 ----------------------------------SASDTAKHYLCQTSSIGTSLSRARDENLWTHLMIPLFTGIMSPPAK 266 (470)
T ss_dssp ----------------------------------CCCSSCEEEEEECSBBCCCSCSSSCCCHHHHTHHHHHHTSCCCC--
T ss_pred ----------------------------------CcccCCCcEEEEeCCcccCCCCccchhHHHHHHHHHhhcccCcccc
Confidence 011123459999999998 974 56765 54 45553111 00
Q ss_pred ccCCCC---CCcccccccccccCCCCeEEEcCCHHHHhhcCCCCCCCceeeee-c---cc-cccccCccccccccccC--
Q 001181 878 YDSEES---DPEWGCWSASQELRSPSIRIIFPTIERVRNACDGILPSKRVLCF-S---EK-TWQRLRNVDILHDAIPH-- 947 (1131)
Q Consensus 878 ~~s~~s---~pe~~~~t~~~e~~~p~~rIIFPT~e~Vr~S~~G~~gGgsi~Cf-~---~k-~W~~~~pr~ifhD~~~~-- 947 (1131)
....++ .|.........+...++++|||||+|+||+|.+||.+||+|.+- + ++ .|.. ++..+||+|.+.
T Consensus 267 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~iIfPTveeVr~S~~Gy~aGgsip~~~~~~~~q~~~l~-~~~~~~~kw~~~~~ 345 (470)
T 3sq7_A 267 DTAGRKKAEILPTNSLINEYSQRKIKPYIIFPTEQEFVTSPLKWSSSGWFHFQYLQKKSYYEMLR-NKFKVFYKQDPAMV 345 (470)
T ss_dssp ---------CCCHHHHHHHHHHTTEEEEEECCBTGGGTTSTTGGGGGGGCBCCCGGGHHHHHHHH-HTSCCEEECCTTTS
T ss_pred ccccccccccCCccchhhhhccCCCCeEEEcCCHHHHhcCccccccCceeeecccchHHHHHHHh-cccceEecccCcCC
Confidence 000000 00000000000123567999999999999999999999977553 1 11 3331 134789999864
Q ss_pred CCCCCCCCcceEEEEeeecCC---------CCCceeEEEEcccccchhhcCCCccCCCCCCCCCCCccCCCCCCceeEee
Q 001181 948 PHDRVGHPMHVKVAWRRFQSR---------TDTSLGWVYCGSHNFSAAAWGRPIQTPSTIKPNGSEKTKSSSSQRLHICN 1018 (1131)
Q Consensus 948 ~s~R~galPHiKty~Rrf~s~---------~~~~igWvYVGSANLSkAAWG~l~knr~~~Ks~~~~~~~ss~~~qL~IrN 1018 (1131)
+.+|.++|||||||+|. ... +.+.++|+|+|||||||||||++++ +|||
T Consensus 346 ~~~R~~a~PHiKtY~r~-s~~~~~~~~~~~~~~~i~W~LlTSaNLSkaAWG~l~k---------------------~irs 403 (470)
T 3sq7_A 346 TRRRGTTPANSKFYMHC-ATNSAGPCDASQVFKELEWCLYTSANLSQTAWGTVSR---------------------KPRN 403 (470)
T ss_dssp CTTTTTCCBCCEEEEEE-EC--------CCTTSEESEEEEESCCBSHHHHCCSSS---------------------CCSS
T ss_pred CCCCCCcCCceEEEEEe-cccccccccccCCCceeeEEEEecccCCHHHhhhhcc---------------------CCcc
Confidence 45799999999999984 432 2358999999999999999999963 4899
Q ss_pred eeeeEEEeCCCC---C--C-CCCCCC----CCCCCCceeeecccCCCCCCCC-CCCcch
Q 001181 1019 YELGIVFVFPPT---E--K-QSSTGN----NTSNLDDIVLPFVVPAPKYRPK-DRPATA 1066 (1131)
Q Consensus 1019 YELGVLfp~P~~---~--~-~~~~~~----~~~~~~~~pvPfdlP~~~Y~~~-D~PW~~ 1066 (1131)
||||||| +|+. . + .+++.. .......++|||++|++||+++ |+|||-
T Consensus 404 YElGVL~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPf~lP~~~Y~~~~D~p~~~ 461 (470)
T 3sq7_A 404 YEAGVLY-HSRRLANTRKVTCRTFTRDRRGCAGNPTHVAVPFTLPVIPYDLAEDECFCL 461 (470)
T ss_dssp BEEEEEE-EGGGSSSSCCEEEEEGGGC-------CCSEEESSCSSCEECCTTTCCBCCC
T ss_pred eeeeEEE-ccccccccceeeccccccccccccCCCceeeecCCCCCccCCCCCCcceee
Confidence 9999999 6542 1 0 112211 1113457999999999999999 999984
No 4
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=99.50 E-value=1.6e-14 Score=140.97 Aligned_cols=83 Identities=27% Similarity=0.422 Sum_probs=70.7
Q ss_pred CCCcceeeeeecCCceeecCCCcccceEEccccccccceeEeee---------ccceeEEEEcCcccccccchhhHHHhh
Q 001181 56 TGSPVDSLTLEPDRPYSIGRASINCDFTFDNRLVSRQHCQILFD---------SSERKIYVLDGTFLLPAFSSVVNEFRK 126 (1131)
Q Consensus 56 ~~~~~~~~~l~~d~~~~igr~~~~~d~~~~~~~vs~~hcqi~~d---------~~~~k~~i~d~~~~~~~~~~~~~~~~~ 126 (1131)
.|..+..+.|.....|+|||+. .||+++++..||++||.|.|. .....+||.|
T Consensus 28 ~g~~~~~~~L~~~~~~~IGR~~-~~di~l~~~~VSr~HA~I~~r~~~~~~~~~~~~~~~~l~D----------------- 89 (130)
T 4h87_A 28 GGTILGTRSLKGTSYCLFGRLS-GCDVCLEHPSVSRYHAVLQHRASGPDGECDSNGPGFYLYD----------------- 89 (130)
T ss_dssp TTEEEEEEECTTCSEEEEESST-TSSEECCCTTSCSSCEEEEEBCCCCCC------CCEEEEE-----------------
T ss_pred CCeeeeeEEeCCCceEEEcCCc-CCCEEeCCCCcchhcEEEEEecccCccceeccCCcceEee-----------------
Confidence 3556788888877789999998 899999999999999999874 3445677887
Q ss_pred hcccccccccccccceeeeeeccceEeeceEecccceEeecCCCeEEE
Q 001181 127 KRDKSLEDEEEDEGFSRVMVSLNGVFVNGIRLKSGIVRELNAGDEVLF 174 (1131)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~s~ng~fvng~r~~kg~~~el~~gd~v~~ 174 (1131)
+ -|+|||||||.||.++..++|+.||+|.|
T Consensus 90 --------------l----~StNGT~vNg~ri~~~~~~~L~~GD~I~~ 119 (130)
T 4h87_A 90 --------------L----GSTHGTFLNKTRIPPRTYCRVHVGHVVRF 119 (130)
T ss_dssp --------------C----SCSSCEEETTEECCTTCCEECCTTCEEEE
T ss_pred --------------C----CCCCceEECCEECCCCceeECCCCCEEEE
Confidence 1 39999999999999999999999999988
No 5
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A*
Probab=99.48 E-value=5.5e-14 Score=141.00 Aligned_cols=84 Identities=25% Similarity=0.485 Sum_probs=73.4
Q ss_pred eeeeeecCC-ceeecCCCcccceEEccccccccceeEeeeccc-------------eeEEEEcCcccccccchhhHHHhh
Q 001181 61 DSLTLEPDR-PYSIGRASINCDFTFDNRLVSRQHCQILFDSSE-------------RKIYVLDGTFLLPAFSSVVNEFRK 126 (1131)
Q Consensus 61 ~~~~l~~d~-~~~igr~~~~~d~~~~~~~vs~~hcqi~~d~~~-------------~k~~i~d~~~~~~~~~~~~~~~~~ 126 (1131)
..+.|.++. ||+|||+. .||+++++..||++||+|.++... -.+||.|
T Consensus 18 ~~i~L~~~~~~~~IGR~~-~~di~l~d~~VSr~Ha~I~~~~~~~g~~~~~~~~~~~~~~~l~D----------------- 79 (158)
T 1dmz_A 18 ESLEIQQGVNPFFIGRSE-DCNCKIEDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCH----------------- 79 (158)
T ss_dssp CCEEETTSCSCEEEESST-TSSEECCCTTSCSSSEEEEEEECCCCCCCSSCSCSSCEEEEEEE-----------------
T ss_pred eEEEEcCCCceEEECCCC-CCCEEeCCCCcChHHeEEEEecCccccccccccccccccEEEEE-----------------
Confidence 567788776 99999998 899999999999999999998621 5678888
Q ss_pred hcccccccccccccceeeeeeccceEeeceEecccceEeecCCCeEEEEecCCcc
Q 001181 127 KRDKSLEDEEEDEGFSRVMVSLNGVFVNGIRLKSGIVRELNAGDEVLFVCRDESL 181 (1131)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~s~ng~fvng~r~~kg~~~el~~gd~v~~~~~~~~~ 181 (1131)
.|+|||||||.||.+|..++|+.||+|.|++...|.
T Consensus 80 -------------------lStNGT~VNg~ri~~~~~~~L~~GD~I~l~~d~~G~ 115 (158)
T 1dmz_A 80 -------------------TGTNVSYLNNNRMIQGTKFLLQDGDEIKIIWDKNNK 115 (158)
T ss_dssp -------------------CSTTCCEETTEECCSSEEEECCSSCCEESCCCTTTT
T ss_pred -------------------CCcCCeEECCEEcCCCceEEcCCCCEEEEeecCCCC
Confidence 699999999999999999999999999998765544
No 6
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae}
Probab=99.43 E-value=1.5e-13 Score=138.27 Aligned_cols=94 Identities=26% Similarity=0.410 Sum_probs=79.3
Q ss_pred cceeeeeecCCceeecCCC--------------cccceEEccccccccceeEeeeccc--eeEEEEcCcccccccchhhH
Q 001181 59 PVDSLTLEPDRPYSIGRAS--------------INCDFTFDNRLVSRQHCQILFDSSE--RKIYVLDGTFLLPAFSSVVN 122 (1131)
Q Consensus 59 ~~~~~~l~~d~~~~igr~~--------------~~~d~~~~~~~vs~~hcqi~~d~~~--~k~~i~d~~~~~~~~~~~~~ 122 (1131)
+++.++|...+.|+|||.+ ..||++|++..||++||+|.++... .++||.|
T Consensus 46 ~~~~~~L~~~~~~~IGR~~~~~~~~~~~~~n~~~~~Di~l~~~~VSr~HA~I~~~~~~~~~~~~l~D------------- 112 (158)
T 3els_A 46 PWKRYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRNVRGILKCYVMD------------- 112 (158)
T ss_dssp CSEEEECSSCSEEEEEECCCC---------CCCCCCSEEECCTTSCSSCEEEEEEEETTEEEEEEEE-------------
T ss_pred cceEEEecCCCceEeccccccccccccccccccccCCEEcCCCCCCcccEEEEEEccCCeeEEEEEe-------------
Confidence 7899999999999999995 4699999999999999999998764 3588999
Q ss_pred HHhhhcccccccccccccceeeee-eccceEeeceEecccceEeecCCCeEEEEecCCcccccCceeeEEEE
Q 001181 123 EFRKKRDKSLEDEEEDEGFSRVMV-SLNGVFVNGIRLKSGIVRELNAGDEVLFVCRDESLCRLQTRIGFLIL 193 (1131)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~-s~ng~fvng~r~~kg~~~el~~gd~v~~~~~~~~~~~~~~~~~f~~~ 193 (1131)
. |+|||||||.||.++..++|+.||+|.|-.. ..+...+|+|.
T Consensus 113 -----------------------l~StNGT~VNg~ri~~~~~~~L~~GD~I~~G~s-----~~~~~~elvF~ 156 (158)
T 3els_A 113 -----------------------LDSSNGTCLNNVVIPGARYIELRSGDVLTLSEF-----EEDNDYELIFM 156 (158)
T ss_dssp -----------------------CSCSSCCEETTEECCTTCCEECCTTEEEESSSC-----GGGCCEEEEEE
T ss_pred -----------------------CCCCCccEECCEEcCCCceEEcCCCCEEEECCC-----CCCCCEEEEEE
Confidence 4 9999999999999999999999999998332 22234666653
No 7
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=99.42 E-value=1.4e-13 Score=141.39 Aligned_cols=84 Identities=25% Similarity=0.485 Sum_probs=73.0
Q ss_pred eeeeeecCC-ceeecCCCcccceEEccccccccceeEeeeccc-------------eeEEEEcCcccccccchhhHHHhh
Q 001181 61 DSLTLEPDR-PYSIGRASINCDFTFDNRLVSRQHCQILFDSSE-------------RKIYVLDGTFLLPAFSSVVNEFRK 126 (1131)
Q Consensus 61 ~~~~l~~d~-~~~igr~~~~~d~~~~~~~vs~~hcqi~~d~~~-------------~k~~i~d~~~~~~~~~~~~~~~~~ 126 (1131)
..+.|..+. +|+|||+. .||+++++..||++||+|.++... -.+||.|
T Consensus 42 ~~i~L~~~~~~~~IGR~~-~~di~l~d~~VSr~HA~I~~~~~~~g~~~~e~~~~~~~~~~l~D----------------- 103 (182)
T 1qu5_A 42 ESLEIQQGVNPFFIGRSE-DCNCKIEDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCH----------------- 103 (182)
T ss_dssp SCCCBTTCCSSEEESSST-TSSSCCCCTTSCSSCEEEEEECCCCCSSCCSSCCCSCCEEEECC-----------------
T ss_pred eEEEEcCCCceEEECCCC-CCCEEECCCCcChHHeEEEEecCccccccccccccccceEEEEE-----------------
Confidence 467788775 89999998 899999999999999999998621 4677777
Q ss_pred hcccccccccccccceeeeeeccceEeeceEecccceEeecCCCeEEEEecCCcc
Q 001181 127 KRDKSLEDEEEDEGFSRVMVSLNGVFVNGIRLKSGIVRELNAGDEVLFVCRDESL 181 (1131)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~s~ng~fvng~r~~kg~~~el~~gd~v~~~~~~~~~ 181 (1131)
.|+|||||||.||.+|..++|+.||+|.|++..+|.
T Consensus 104 -------------------lStNGT~VNg~ri~~~~~~~L~~GD~I~l~~d~~G~ 139 (182)
T 1qu5_A 104 -------------------TGTNVSYLNNNRMIQGTKFLLQDGDEIKIIWDKNNK 139 (182)
T ss_dssp -------------------CSSSCCEETTEECCSSEEEECCTTBCCEEEEEGGGT
T ss_pred -------------------CCcCCeEECCEEcCCCcceEcCCCCEEEEEEcCCCC
Confidence 599999999999999999999999999998755444
No 8
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A
Probab=99.39 E-value=3e-13 Score=128.13 Aligned_cols=94 Identities=27% Similarity=0.556 Sum_probs=78.1
Q ss_pred eeeeeecCCceeecCCCcccceEEccc-cccccceeEeeeccceeEEEEcCcccccccchhhHHHhhhcccccccccccc
Q 001181 61 DSLTLEPDRPYSIGRASINCDFTFDNR-LVSRQHCQILFDSSERKIYVLDGTFLLPAFSSVVNEFRKKRDKSLEDEEEDE 139 (1131)
Q Consensus 61 ~~~~l~~d~~~~igr~~~~~d~~~~~~-~vs~~hcqi~~d~~~~k~~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (1131)
..+.|. ..+++|||+. .||++|++. .||++||+|.+|+..-.+||.|
T Consensus 17 ~~~~l~-~~~~~iGR~~-~~di~l~~~~~vSr~Ha~i~~~~~~~~~~l~D------------------------------ 64 (116)
T 1lgp_A 17 PHVLLR-KREWTIGRRR-GCDLSFPSNKLVSGDHCRIVVDEKSGQVTLED------------------------------ 64 (116)
T ss_dssp CCEEEC-SSEEEEESST-TSSEECTTCTTSCTTCEEEEECTTTCCEEEEE------------------------------
T ss_pred cEEEEC-CCCEEECCCC-CCCEEeCCCCCCChhHeEEEEECCCCeEEEEE------------------------------
Confidence 455554 5689999999 899999875 9999999999987677899999
Q ss_pred cceeeeeeccceEeeceEecccceEeecCCCeEEEEecCCcccccCceeeEEEEEE
Q 001181 140 GFSRVMVSLNGVFVNGIRLKSGIVRELNAGDEVLFVCRDESLCRLQTRIGFLILGI 195 (1131)
Q Consensus 140 ~~~~~~~s~ng~fvng~r~~kg~~~el~~gd~v~~~~~~~~~~~~~~~~~f~~~~i 195 (1131)
-|+|||||||.+|.+|..++|..||+|.|-.... .....+.|+|+.+
T Consensus 65 ------~S~NGt~vng~~l~~~~~~~L~~GD~i~~G~~~~---~~~~~~~f~f~~~ 111 (116)
T 1lgp_A 65 ------TSTSGTVINKLKVVKKQTCPLQTGDVIYLVYRKN---EPEHNVAYLYESL 111 (116)
T ss_dssp ------CSSSCCCCCCCCCCCSSCCCCCTTCEEEEECCSS---CGGGCEEEECCCS
T ss_pred ------CCcCCcEECCEEcCCCCcEECCCCCEEEEeccCC---CCCceEEEEEEcc
Confidence 5899999999999999999999999999976432 2223788888653
No 9
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus}
Probab=99.38 E-value=1.8e-13 Score=134.19 Aligned_cols=81 Identities=26% Similarity=0.532 Sum_probs=73.1
Q ss_pred cceeeeeecCCceeecCCCcccceEEccccccccceeEeeeccceeEEEEcCcccccccchhhHHHhhhccccccccccc
Q 001181 59 PVDSLTLEPDRPYSIGRASINCDFTFDNRLVSRQHCQILFDSSERKIYVLDGTFLLPAFSSVVNEFRKKRDKSLEDEEED 138 (1131)
Q Consensus 59 ~~~~~~l~~d~~~~igr~~~~~d~~~~~~~vs~~hcqi~~d~~~~k~~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (1131)
....+.|..+++|+|||+...||+++++..||++||+|.++.....+||.|-
T Consensus 45 ~g~~~~l~~~~~~~IGR~~~~~di~l~d~~VSr~Ha~i~~~~~~~~~~l~Dl---------------------------- 96 (140)
T 2jpe_A 45 LIEKLIIDEKKYYLFGRNPDLCDFTIDHQSCSRVHAALVYHKHLKRVFLIDL---------------------------- 96 (140)
T ss_dssp EEEEECCSSCSBCCBSSCTTTSSSCCCCSSSCTTSBEEEEBSSSCCEEEECC----------------------------
T ss_pred cceEEEeCCCCeEEecCCCccCCEEeCCCCcChhheEEEEECCCCcEEEEEC----------------------------
Confidence 4567888888899999999559999999999999999999987678999990
Q ss_pred ccceeeeeeccceEeeceEecccceEeecCCCeEEE
Q 001181 139 EGFSRVMVSLNGVFVNGIRLKSGIVRELNAGDEVLF 174 (1131)
Q Consensus 139 ~~~~~~~~s~ng~fvng~r~~kg~~~el~~gd~v~~ 174 (1131)
-|+|||||||.||.++..++|..||+|.|
T Consensus 97 -------~S~NGT~vNg~~l~~~~~~~L~~gd~i~~ 125 (140)
T 2jpe_A 97 -------NSTHGTFLGHIRLEPHKPQQIPIDSTVSF 125 (140)
T ss_dssp -------SCSSCEESSSCEECSSSCCEECTTCCBBC
T ss_pred -------CCCCCeEECCEECCCCccEECCCCCEEEE
Confidence 38999999999999999999999999877
No 10
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=99.34 E-value=1.3e-12 Score=129.51 Aligned_cols=87 Identities=29% Similarity=0.466 Sum_probs=73.5
Q ss_pred eeeeecCCceeecCCCcccceEEcccc---------ccccceeEeeecc---ceeEEEEcCcccccccchhhHHHhhhcc
Q 001181 62 SLTLEPDRPYSIGRASINCDFTFDNRL---------VSRQHCQILFDSS---ERKIYVLDGTFLLPAFSSVVNEFRKKRD 129 (1131)
Q Consensus 62 ~~~l~~d~~~~igr~~~~~d~~~~~~~---------vs~~hcqi~~d~~---~~k~~i~d~~~~~~~~~~~~~~~~~~~~ 129 (1131)
.+.|. ...++|||+. .||++|++.. ||++||.|.++.. ...+||.|
T Consensus 42 ~i~L~-~~~~~IGR~~-~~di~l~d~~~~~~~~~~~VSr~Ha~I~~~~~~~~~~~~~i~D-------------------- 99 (149)
T 1gxc_A 42 NLECV-NDNYWFGRDK-SCEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIED-------------------- 99 (149)
T ss_dssp CEEEC-SSEEEEESST-TCSEECCCGGGGGSSGGGGSCTTCEEEEEEECTTSSEEEEEEE--------------------
T ss_pred eEEEC-CCCEEecCCC-CCCEEECCccccccccCCcCchhheEEEEECCCCceeEEEEEE--------------------
Confidence 36665 4589999998 8999999995 9999999999876 34789999
Q ss_pred cccccccccccceeeeeeccceEeeceEecccceEeecCCCeEEEEecCCcccccCceeeEEEEE
Q 001181 130 KSLEDEEEDEGFSRVMVSLNGVFVNGIRLKSGIVRELNAGDEVLFVCRDESLCRLQTRIGFLILG 194 (1131)
Q Consensus 130 ~~~~~~~~~~~~~~~~~s~ng~fvng~r~~kg~~~el~~gd~v~~~~~~~~~~~~~~~~~f~~~~ 194 (1131)
.|+|||||||.||.+|..+.|..||+|.|-.. ..+-|+|+.
T Consensus 100 ----------------~StNGT~VNg~~i~~~~~~~L~~GD~I~lG~~--------~~~~f~f~d 140 (149)
T 1gxc_A 100 ----------------HSGNGTFVNTELVGKGKRRPLNNNSEIALSLS--------RNKVFVFFD 140 (149)
T ss_dssp ----------------CCSSCEEETTEECCTTCEEECCTTEEEEESST--------TCEEEEEEE
T ss_pred ----------------CCCCCeEECCEECCCCCeEECCCCCEEEECCC--------CCeEEEEEE
Confidence 69999999999999999999999999998542 246777754
No 11
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=99.34 E-value=9e-13 Score=125.33 Aligned_cols=77 Identities=25% Similarity=0.363 Sum_probs=68.7
Q ss_pred eeeeeecCCceeecCCCcccceEEccccccccceeEeeeccceeEEEEcCcccccccchhhHHHhhhccccccccccccc
Q 001181 61 DSLTLEPDRPYSIGRASINCDFTFDNRLVSRQHCQILFDSSERKIYVLDGTFLLPAFSSVVNEFRKKRDKSLEDEEEDEG 140 (1131)
Q Consensus 61 ~~~~l~~d~~~~igr~~~~~d~~~~~~~vs~~hcqi~~d~~~~k~~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (1131)
..+.|.+..+++|||+...||+++++..||++||+|.++.. ++||.|
T Consensus 25 ~~~~l~~~~~~~iGR~~~~~di~l~d~~vSr~Ha~i~~~~~--~~~l~D------------------------------- 71 (118)
T 1uht_A 25 DALDYKPGSTIRVGRIVRGNEIAIKDAGISTKHLRIESDSG--NWVIQD------------------------------- 71 (118)
T ss_dssp CBCCBCTTCCEEEESSSTTCSEECCSSSSCTTCEEEEECSS--SEEEEC-------------------------------
T ss_pred cEEEECCCCEEEEcCCCCCCCEEeCCCCCchHHeEEEEECC--EEEEEE-------------------------------
Confidence 35677777899999996699999999999999999999875 688888
Q ss_pred ceeeeeeccceEeeceEecccceEeecCCCeEEE
Q 001181 141 FSRVMVSLNGVFVNGIRLKSGIVRELNAGDEVLF 174 (1131)
Q Consensus 141 ~~~~~~s~ng~fvng~r~~kg~~~el~~gd~v~~ 174 (1131)
+ -|+|||||||.||.++..++|+.||+|.|
T Consensus 72 l----~S~nGT~vng~~l~~~~~~~L~~gd~i~l 101 (118)
T 1uht_A 72 L----GSSNGTLLNSNALDPETSVNLGDGDVIKL 101 (118)
T ss_dssp C----CCSSCCEESSSBCCTTCEEECCTTEEEEE
T ss_pred C----CCCCCeEECCEECCCCCeEEcCCCCEEEE
Confidence 1 38999999999999999999999999987
No 12
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A
Probab=99.33 E-value=8.6e-13 Score=138.03 Aligned_cols=83 Identities=29% Similarity=0.417 Sum_probs=74.0
Q ss_pred cceeeeeecCCceeecCCC--------------cccceEEccccccccceeEeeeccc--eeEEEEcCcccccccchhhH
Q 001181 59 PVDSLTLEPDRPYSIGRAS--------------INCDFTFDNRLVSRQHCQILFDSSE--RKIYVLDGTFLLPAFSSVVN 122 (1131)
Q Consensus 59 ~~~~~~l~~d~~~~igr~~--------------~~~d~~~~~~~vs~~hcqi~~d~~~--~k~~i~d~~~~~~~~~~~~~ 122 (1131)
+++.++|.....|+|||.. ..||+++++..||++||+|.++... .++||.|-
T Consensus 93 ~i~~~~L~~~s~y~IGR~~~~~~~~~~~~~~e~~~cDIvL~dp~VSR~HA~I~~~~~~~~~~~~l~DL------------ 160 (205)
T 3elv_A 93 PWKRYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRNVRGILKCYVMDL------------ 160 (205)
T ss_dssp CSEEEECSSCSEEEEEECCCC---------CCCCCCSEEECCTTSCTTCEEEEEEEETTEEEEEEEEC------------
T ss_pred cceEEEecCCCceeecccccccccccccccccCccceEEeCCCCCCcccEEEEEecCCCceeEEEEeC------------
Confidence 7899999988899999994 4699999999999999999997643 46899991
Q ss_pred HHhhhcccccccccccccceeeeeeccceEeeceEecccceEeecCCCeEEEEe
Q 001181 123 EFRKKRDKSLEDEEEDEGFSRVMVSLNGVFVNGIRLKSGIVRELNAGDEVLFVC 176 (1131)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~s~ng~fvng~r~~kg~~~el~~gd~v~~~~ 176 (1131)
-|+|||||||.||.++..++|..||+|.|-.
T Consensus 161 -----------------------gStNGTfVNG~rI~~~~~~~L~~GD~I~fG~ 191 (205)
T 3elv_A 161 -----------------------DSSNGTCLNNVVIPGARYIELRSGDVLTLSE 191 (205)
T ss_dssp -----------------------SCSSCCEETTEECCBTSCEECCTTCEEESSS
T ss_pred -----------------------CCCCCCeECCEECCCCceeECCCCCEEEECC
Confidence 4999999999999999999999999998854
No 13
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=99.31 E-value=2.9e-12 Score=119.89 Aligned_cols=76 Identities=25% Similarity=0.470 Sum_probs=66.5
Q ss_pred eeeeeecCCceeecCCCcccceEEccccccccceeEeeeccceeEEEEcCcccccccchhhHHHhhhccccccccccccc
Q 001181 61 DSLTLEPDRPYSIGRASINCDFTFDNRLVSRQHCQILFDSSERKIYVLDGTFLLPAFSSVVNEFRKKRDKSLEDEEEDEG 140 (1131)
Q Consensus 61 ~~~~l~~d~~~~igr~~~~~d~~~~~~~vs~~hcqi~~d~~~~k~~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (1131)
..+.|.++++|+|||+...||+++++..||++||+|.+++.. ++||.|
T Consensus 17 ~~~~l~~~~~~~iGR~~~~~di~l~d~~vSr~Ha~i~~~~~~-~~~l~D------------------------------- 64 (106)
T 3gqs_A 17 AEFHLDSGKTYIVGSDPQVADIVLSDMSISRQHAKIIIGNDN-SVLIED------------------------------- 64 (106)
T ss_dssp CEEEECTTCEEEEESCTTTCSEECCCTTSCSSCEEEEECTTS-CEEEEE-------------------------------
T ss_pred EEEEECCCCEEEEeECCCcCCEEeCCCCcchhhcEEEECCCC-cEEEEE-------------------------------
Confidence 567888889999999987899999999999999999998532 388888
Q ss_pred ceeeeeeccceEeeceEecccceEeecCCCeEEE
Q 001181 141 FSRVMVSLNGVFVNGIRLKSGIVRELNAGDEVLF 174 (1131)
Q Consensus 141 ~~~~~~s~ng~fvng~r~~kg~~~el~~gd~v~~ 174 (1131)
+ -|+|||||||.+|.+ .++|..||+|.|
T Consensus 65 l----~S~nGt~vng~~i~~--~~~L~~Gd~i~~ 92 (106)
T 3gqs_A 65 L----GSKNGVIVEGRKIEH--QSTLSANQVVAL 92 (106)
T ss_dssp C----SCSSCCEETTEECSS--EEECCTTCCEEE
T ss_pred C----cCCCCeEECCEECCC--CeECCCCCEEEE
Confidence 0 389999999999998 569999999976
No 14
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=99.30 E-value=2.6e-12 Score=127.55 Aligned_cols=77 Identities=29% Similarity=0.456 Sum_probs=68.4
Q ss_pred ceeeeeecCCceeecCCCcccceEEccccccccceeEeeec------cceeEEEEcCcccccccchhhHHHhhhcccccc
Q 001181 60 VDSLTLEPDRPYSIGRASINCDFTFDNRLVSRQHCQILFDS------SERKIYVLDGTFLLPAFSSVVNEFRKKRDKSLE 133 (1131)
Q Consensus 60 ~~~~~l~~d~~~~igr~~~~~d~~~~~~~vs~~hcqi~~d~------~~~k~~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 133 (1131)
-..+.|.....++|||+. .||+++++..||++||+|.++. ....+||.|
T Consensus 29 g~~~~l~~~~~~~IGR~~-~~di~l~d~~VSr~Ha~I~~~~~~~~~~~~~~~~l~D------------------------ 83 (151)
T 2jqj_A 29 EQKVEITNRNVTTIGRSR-SCDVILSEPDISTFHAEFHLLQMDVDNFQRNLINVID------------------------ 83 (151)
T ss_dssp EEEEEEECCSCEEEESST-TSSEECCCTTCCTTSEEEEEEEEEETTEEEEEEEEEE------------------------
T ss_pred ceEEEEcCCCeEEeCCCC-CCCEEECCCCCccccCEEEEecccCCcCcCCEEEEEE------------------------
Confidence 346677777899999998 8999999999999999999942 556788888
Q ss_pred cccccccceeeeeeccceEeeceEecccceEeecCCCeEEE
Q 001181 134 DEEEDEGFSRVMVSLNGVFVNGIRLKSGIVRELNAGDEVLF 174 (1131)
Q Consensus 134 ~~~~~~~~~~~~~s~ng~fvng~r~~kg~~~el~~gd~v~~ 174 (1131)
.|+|||||||.+|.+| .++|..||+|.|
T Consensus 84 ------------lS~NGT~VNg~~i~~~-~~~L~~GD~I~l 111 (151)
T 2jqj_A 84 ------------KSRNGTFINGNRLVKK-DYILKNGDRIVF 111 (151)
T ss_dssp ------------CCSSCEEETTEECCSS-CEEECSSEEEEE
T ss_pred ------------CCCCCeEECCEEcCCC-ceECCCCCEEEE
Confidence 5999999999999999 999999999987
No 15
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=99.30 E-value=3.8e-12 Score=122.88 Aligned_cols=91 Identities=25% Similarity=0.487 Sum_probs=75.2
Q ss_pred ceeeeeecC------------CceeecCCCcccceEEccc-cccccceeEeeeccceeEEEEcCcccccccchhhHHHhh
Q 001181 60 VDSLTLEPD------------RPYSIGRASINCDFTFDNR-LVSRQHCQILFDSSERKIYVLDGTFLLPAFSSVVNEFRK 126 (1131)
Q Consensus 60 ~~~~~l~~d------------~~~~igr~~~~~d~~~~~~-~vs~~hcqi~~d~~~~k~~i~d~~~~~~~~~~~~~~~~~ 126 (1131)
.+.+.|..| .+++|||+. .||+++++. .||++||+|.+|. .-.+||.|
T Consensus 15 ~p~~~l~~~~~~i~~~~~~~~~~~~IGR~~-~~di~l~~~~~vSr~Ha~i~~~~-~g~~~l~D----------------- 75 (127)
T 1g6g_A 15 IPIRDLSADISQVLKEKRSIKKVWTFGRNP-ACDYHLGNISRLSNKHFQILLGE-DGNLLLND----------------- 75 (127)
T ss_dssp SCCEEEEECHHHHHHCCSSCCEEEEEESST-TSSEECCSCTTSCSSCEEEEECT-TSCEEEEE-----------------
T ss_pred CCceEeeccccceeeeeecCCCCEEECCCC-CCCEEeCCCCCCChhHeEEEECC-CCcEEEEE-----------------
Confidence 556677666 289999999 699999997 6999999999973 24688888
Q ss_pred hcccccccccccccceeeeeeccceEeeceEecccceEeecCCCeEEEEecCCcccccCceeeEEEE
Q 001181 127 KRDKSLEDEEEDEGFSRVMVSLNGVFVNGIRLKSGIVRELNAGDEVLFVCRDESLCRLQTRIGFLIL 193 (1131)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~s~ng~fvng~r~~kg~~~el~~gd~v~~~~~~~~~~~~~~~~~f~~~ 193 (1131)
.|+|||||||.+|.+|..++|..||+|.|-... ....|.|+|+
T Consensus 76 -------------------lS~NGT~vNg~~l~~~~~~~L~~Gd~I~lG~~~-----~~~~i~f~~~ 118 (127)
T 1g6g_A 76 -------------------ISTNGTWLNGQKVEKNSNQLLSQGDEITVGVGV-----ESDILSLVIF 118 (127)
T ss_dssp -------------------CCSSCCEETTEECCTTCCEECCTTCEEEECTTS-----GGGCEEEEEE
T ss_pred -------------------CCcCCeEECCEEcCCCCeEEcCCCCEEEECCCc-----cCceEEEEEE
Confidence 599999999999999999999999999884432 2447788874
No 16
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=99.30 E-value=3.5e-12 Score=124.91 Aligned_cols=94 Identities=23% Similarity=0.356 Sum_probs=76.9
Q ss_pred ceeeeeecCCceeecCCCcccceEEcccc----ccccceeEeeeccceeEEEEcCcccccccchhhHHHhhhcccccccc
Q 001181 60 VDSLTLEPDRPYSIGRASINCDFTFDNRL----VSRQHCQILFDSSERKIYVLDGTFLLPAFSSVVNEFRKKRDKSLEDE 135 (1131)
Q Consensus 60 ~~~~~l~~d~~~~igr~~~~~d~~~~~~~----vs~~hcqi~~d~~~~k~~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (1131)
...+.|.+..+++|||+. .||+++++.. ||++||+|.++.. -++||.|
T Consensus 19 ~~~~~l~~~~~~~IGR~~-~~di~l~~~~~~~~VSr~Ha~i~~~~~-g~~~l~D-------------------------- 70 (138)
T 2pie_A 19 AGWLLLEDGCEVTVGRGF-GVTYQLVSKICPLMISRNHCVLKQNPE-GQWTIMD-------------------------- 70 (138)
T ss_dssp SCBEEECTTCCEEEESSS-SSSEECCCSSCTTSSCSSCEEEEECTT-SCEEEEE--------------------------
T ss_pred CCEEEecCCCeEEECCCC-CCCEEeCCCCcCCCCChhHeEEEEcCC-CcEEEEE--------------------------
Confidence 346788888899999999 8999999998 9999999999632 3688888
Q ss_pred cccccceeeee-eccceEeeceEecccceEeecCCCeEEEEecCCcccccCceeeEEEEEE
Q 001181 136 EEDEGFSRVMV-SLNGVFVNGIRLKSGIVRELNAGDEVLFVCRDESLCRLQTRIGFLILGI 195 (1131)
Q Consensus 136 ~~~~~~~~~~~-s~ng~fvng~r~~kg~~~el~~gd~v~~~~~~~~~~~~~~~~~f~~~~i 195 (1131)
. |+|||||||.||.+|..++|..||+|.|-.+-++ +..+.|.++.+
T Consensus 71 ----------l~S~NGT~vNg~~l~~~~~~~L~~GD~I~lG~~~~~----~~~~~f~~~~~ 117 (138)
T 2pie_A 71 ----------NKSLNGVWLNRARLEPLRVYSIHQGDYIQLGVPLEN----KENAEYEYEVT 117 (138)
T ss_dssp ----------CSCSSCEEETTEECCTTCCEECCTTCEEEESCCCTT----CSSCSEEEEEE
T ss_pred ----------CCCCCCeEECCEEcCCCCcEECCCCCEEEECCCCCC----CceEEEEEEec
Confidence 4 8999999999999999999999999998653221 23456666543
No 17
>1mzk_A Kinase associated protein phosphatase; beta sandwich, hydrolase; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=99.25 E-value=4.4e-12 Score=124.32 Aligned_cols=78 Identities=29% Similarity=0.422 Sum_probs=69.1
Q ss_pred eeeeeecC----CceeecCCCcccceEEccccccccceeEeeeccceeEEEEcCcccccccchhhHHHhhhccccccccc
Q 001181 61 DSLTLEPD----RPYSIGRASINCDFTFDNRLVSRQHCQILFDSSERKIYVLDGTFLLPAFSSVVNEFRKKRDKSLEDEE 136 (1131)
Q Consensus 61 ~~~~l~~d----~~~~igr~~~~~d~~~~~~~vs~~hcqi~~d~~~~k~~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (1131)
..+.|..+ .+++|||+. .||+++++..||++||+|.++.....+||.|
T Consensus 20 ~~~~l~~~~~~~~~~~IGR~~-~~di~l~d~~VSr~Ha~i~~~~~~~~~~l~D--------------------------- 71 (139)
T 1mzk_A 20 LQHAVNSTSSSKLPVKLGRVS-PSDLALKDSEVSGKHAQITWNSTKFKWELVD--------------------------- 71 (139)
T ss_dssp CEEEECTTCSTTCSEEEESSS-SCSEECCCTTSSSEEEEEEEETTTTEEEEEE---------------------------
T ss_pred eEEEecCCCCccceEEeeCCC-CCCEEeCCCCCChHHcEEEEECCCCEEEEEE---------------------------
Confidence 35677776 389999998 6999999999999999999999777899999
Q ss_pred ccccceeeeeeccceEeeceEecc--------cceEeecCCCeEEE
Q 001181 137 EDEGFSRVMVSLNGVFVNGIRLKS--------GIVRELNAGDEVLF 174 (1131)
Q Consensus 137 ~~~~~~~~~~s~ng~fvng~r~~k--------g~~~el~~gd~v~~ 174 (1131)
+ -|+|||||||.+|.+ |..+.|+.||+|.|
T Consensus 72 ----l----gS~NGT~vNg~~i~~~~~~~~~~~~~~~L~~GD~I~i 109 (139)
T 1mzk_A 72 ----M----GSLNGTLVNSHSISHPDLGSRKWGNPVELASDDIITL 109 (139)
T ss_dssp ----T----TCSSCCEETTEESSCCCTTTCCCCCCEECCTTEEEEC
T ss_pred ----C----CCCCCEEECCEECcCcccccccCCceEECCCCCEEEE
Confidence 0 389999999999995 88999999999987
No 18
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2
Probab=99.25 E-value=6.8e-12 Score=123.91 Aligned_cols=84 Identities=26% Similarity=0.428 Sum_probs=71.8
Q ss_pred CCcceeeeeecCCceeecCCCcccceEEcccc----ccccceeEeeeccceeEEEEcCcccccccchhhHHHhhhccccc
Q 001181 57 GSPVDSLTLEPDRPYSIGRASINCDFTFDNRL----VSRQHCQILFDSSERKIYVLDGTFLLPAFSSVVNEFRKKRDKSL 132 (1131)
Q Consensus 57 ~~~~~~~~l~~d~~~~igr~~~~~d~~~~~~~----vs~~hcqi~~d~~~~k~~i~d~~~~~~~~~~~~~~~~~~~~~~~ 132 (1131)
|..-..+.|....+++|||.. .||+++++.. ||++||+|.++.. -++||.|
T Consensus 24 G~~~~~~~l~~~~~~~IGR~~-~~di~l~~~~~~~~VSr~Ha~i~~~~~-g~~~l~D----------------------- 78 (145)
T 2csw_A 24 GMSAGWLLLEDGCEVTVGRGF-GVTYQLVSKICPLMISRNHCVLKQNPE-GQWTIMD----------------------- 78 (145)
T ss_dssp TCSCCBEECCTTCCEEEESST-TSSEECCCSSCGGGSCTTCEEEEECTT-SCEEEEB-----------------------
T ss_pred CCCCCeEEeCCCCcEEECCCC-CCCEEECCCCcCCCCChhHeEEEEcCC-CeEEEEE-----------------------
Confidence 333456777777899999999 8999999998 9999999999643 3588888
Q ss_pred ccccccccceeeeeeccceEeeceEecccceEeecCCCeEEEEec
Q 001181 133 EDEEEDEGFSRVMVSLNGVFVNGIRLKSGIVRELNAGDEVLFVCR 177 (1131)
Q Consensus 133 ~~~~~~~~~~~~~~s~ng~fvng~r~~kg~~~el~~gd~v~~~~~ 177 (1131)
+ -|+|||||||.||.++..++|+.||+|.|-.+
T Consensus 79 --------l----~S~NGT~vNg~~i~~~~~~~L~~GD~I~iG~~ 111 (145)
T 2csw_A 79 --------N----KSLNGVWLNRARLEPLRVYSIHQGDYIQLGVP 111 (145)
T ss_dssp --------S----SCSSCEEESSCBCCBTCCEECCSSCCEEESCC
T ss_pred --------C----CCCCCeEECCEECCCCccEECCCCCEEEECCC
Confidence 1 38999999999999999999999999999664
No 19
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=99.22 E-value=7.7e-12 Score=121.96 Aligned_cols=79 Identities=30% Similarity=0.617 Sum_probs=61.8
Q ss_pred eeeeeecCCceeecCCCcccceEEccccccccceeEeeeccc---eeEEEEcCcccccccchhhHHHhhhcccccccccc
Q 001181 61 DSLTLEPDRPYSIGRASINCDFTFDNRLVSRQHCQILFDSSE---RKIYVLDGTFLLPAFSSVVNEFRKKRDKSLEDEEE 137 (1131)
Q Consensus 61 ~~~~l~~d~~~~igr~~~~~d~~~~~~~vs~~hcqi~~d~~~---~k~~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (1131)
..+.|.. ..|+|||+. .||++|++..||++||+|.++... ..++|.|. +
T Consensus 23 ~~~~l~~-~~~~IGR~~-~~di~l~d~~VSr~Ha~I~~~~~~~g~~~~~l~Dl-----------------------~--- 74 (131)
T 3hx1_A 23 REVLLTE-TFYTIGRSP-RADIRIKSQFVSRIHAVLVRKSSDDVQAAYRIIDG-----------------------D--- 74 (131)
T ss_dssp EEEEECS-SEEEEESST-TSSEECCCSSSCTTCEEEEEC------CCEEEEES-----------------------C---
T ss_pred EEEEECC-CCEEECCCC-CCCEEECCCCcChhheEEEEEccCCCceEEEEEEC-----------------------C---
Confidence 3455544 469999998 699999999999999999998543 25888881 0
Q ss_pred cccceeeeeeccceEeeceEecccceEeecCCCeEEE
Q 001181 138 DEGFSRVMVSLNGVFVNGIRLKSGIVRELNAGDEVLF 174 (1131)
Q Consensus 138 ~~~~~~~~~s~ng~fvng~r~~kg~~~el~~gd~v~~ 174 (1131)
.++. -|+|||||||.||.+ ++|+.||+|.|
T Consensus 75 ~~~~----~S~NGT~vNg~~i~~---~~L~~GD~I~i 104 (131)
T 3hx1_A 75 EDGQ----SSVNGLMINGKKVQE---HIIQTGDEIVM 104 (131)
T ss_dssp TTSC----CCSSCEEETTEEESE---EECCTTCEEEC
T ss_pred CCCC----CCCCceEECCEEeEe---EECCCCCEEEE
Confidence 1122 389999999999997 89999999976
No 20
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Probab=99.21 E-value=1.8e-11 Score=123.36 Aligned_cols=81 Identities=26% Similarity=0.505 Sum_probs=68.2
Q ss_pred ceeecCCCcccceEEccc-cccccceeEeeeccceeEEEEcCcccccccchhhHHHhhhcccccccccccccceeeeeec
Q 001181 70 PYSIGRASINCDFTFDNR-LVSRQHCQILFDSSERKIYVLDGTFLLPAFSSVVNEFRKKRDKSLEDEEEDEGFSRVMVSL 148 (1131)
Q Consensus 70 ~~~igr~~~~~d~~~~~~-~vs~~hcqi~~d~~~~k~~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 148 (1131)
+|+|||+. .||+++++. .||++||.|.++. .-.+||.| .|+
T Consensus 65 ~~~IGR~~-~~di~l~d~~~vSr~Ha~I~~~~-~g~~~l~D------------------------------------lS~ 106 (164)
T 1g3g_A 65 VWTFGRNP-ACDYHLGNISRLSNKHFQILLGE-DGNLLLND------------------------------------IST 106 (164)
T ss_dssp EEEEESSS-SSSEECCCCTTTTSSCEEEEECS-TTCEEEEE------------------------------------CCS
T ss_pred cEEECCCC-CCCEEeCCcCCcChhHEEEEECC-CCCEEEEE------------------------------------CCC
Confidence 89999998 599999997 7999999999973 24688888 599
Q ss_pred cceEeeceEecccceEeecCCCeEEEEecCCcccccCceeeEEEE
Q 001181 149 NGVFVNGIRLKSGIVRELNAGDEVLFVCRDESLCRLQTRIGFLIL 193 (1131)
Q Consensus 149 ng~fvng~r~~kg~~~el~~gd~v~~~~~~~~~~~~~~~~~f~~~ 193 (1131)
|||||||.+|.+|..++|..||+|.|-... ....+.|+|.
T Consensus 107 NGT~vNg~~i~~~~~~~L~~GD~I~iG~~~-----~~~~~~f~~~ 146 (164)
T 1g3g_A 107 NGTWLNGQKVEKNSNQLLSQGDEITVGVGV-----ESDILSLVIF 146 (164)
T ss_dssp SCEEETTEEECTTEEEECCTTCEEEESCSS-----TTSCEEEEEE
T ss_pred CCeEECCEEcCCCCceEcCCCCEEEECCCC-----CCCcEEEEEE
Confidence 999999999999999999999999885543 1235677763
No 21
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B
Probab=99.18 E-value=1.2e-11 Score=121.00 Aligned_cols=77 Identities=23% Similarity=0.357 Sum_probs=66.4
Q ss_pred eeeeeecCCceeecCCCcccceEEccccccccceeEeeeccceeEEEEcCcccccccchhhHHHhhhccccccccccccc
Q 001181 61 DSLTLEPDRPYSIGRASINCDFTFDNRLVSRQHCQILFDSSERKIYVLDGTFLLPAFSSVVNEFRKKRDKSLEDEEEDEG 140 (1131)
Q Consensus 61 ~~~~l~~d~~~~igr~~~~~d~~~~~~~vs~~hcqi~~d~~~~k~~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (1131)
..+.|..+ .++|||+. .||+++++..||++||+|.+++...+++|.|
T Consensus 38 ~~~~L~~~-~~~IGR~~-~~di~l~d~~VSr~HA~i~~~~~~~~~~l~D------------------------------- 84 (132)
T 3va4_A 38 RDFPLYLG-KNVVGRSP-DCSVALPFPSISKQHAVIEISAWNKAPILQD------------------------------- 84 (132)
T ss_dssp EEEEECSE-EEEEESST-TSSEECCCTTSCTTCEEEEECSTTSCCEEEE-------------------------------
T ss_pred eEEEECCC-CEEEccCC-CCCEEeCCCCcChhHEEEEEEcCCCEEEEEE-------------------------------
Confidence 44555533 69999998 7999999999999999999997666788888
Q ss_pred ceeeeeeccceEeeceE--ecccceEeecCCCeEEE
Q 001181 141 FSRVMVSLNGVFVNGIR--LKSGIVRELNAGDEVLF 174 (1131)
Q Consensus 141 ~~~~~~s~ng~fvng~r--~~kg~~~el~~gd~v~~ 174 (1131)
+ -|+|||||||.+ |.++..++|+.||+|.|
T Consensus 85 l----~S~NGT~vNg~~i~l~~~~~~~L~~GD~I~l 116 (132)
T 3va4_A 85 C----GSLNGTQIVKPPRVLPPGVSHRLRDQELILF 116 (132)
T ss_dssp C----SCSSCEEETTTTEEECTTCCEECCTTCEEEE
T ss_pred C----CCCCCeEECCEEcccCCCCEEECCCCCEEEE
Confidence 1 489999999998 78999999999999987
No 22
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=99.15 E-value=4.5e-11 Score=110.61 Aligned_cols=72 Identities=28% Similarity=0.423 Sum_probs=60.9
Q ss_pred eeeeeecCCceeecCCCcccceEEccccccccceeEeeeccceeEEEEcCcccccccchhhHHHhhhccccccccccccc
Q 001181 61 DSLTLEPDRPYSIGRASINCDFTFDNRLVSRQHCQILFDSSERKIYVLDGTFLLPAFSSVVNEFRKKRDKSLEDEEEDEG 140 (1131)
Q Consensus 61 ~~~~l~~d~~~~igr~~~~~d~~~~~~~vs~~hcqi~~d~~~~k~~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (1131)
..+.|..+ .++|||+. .||+++++..||++||+|.++.. +++|.|
T Consensus 16 ~~~~l~~~-~~~IGR~~-~~di~l~d~~vSr~Ha~i~~~~~--~~~l~D------------------------------- 60 (100)
T 3po8_A 16 RTYQLREG-SNIIGRGQ-DAQFRLPDTGVSRRHLEIRWDGQ--VALLAD------------------------------- 60 (100)
T ss_dssp CEEECCSE-EEEEESST-TCSEECCCTTSCSSCEEEEECSS--CEEEEE-------------------------------
T ss_pred cEEEECCC-CEEEeCCC-CCCEECCCCCcChhhCEEEEeCC--EEEEEE-------------------------------
Confidence 34555443 59999988 89999999999999999999865 578888
Q ss_pred ceeeeeeccceEeeceEecccceEeecCCCeEEE
Q 001181 141 FSRVMVSLNGVFVNGIRLKSGIVRELNAGDEVLF 174 (1131)
Q Consensus 141 ~~~~~~s~ng~fvng~r~~kg~~~el~~gd~v~~ 174 (1131)
+ -|+|||||||.++. .++|+.||++.|
T Consensus 61 l----~S~nGt~vng~~i~---~~~L~~gd~i~i 87 (100)
T 3po8_A 61 L----NSTNGTTVNNAPVQ---EWQLADGDVIRL 87 (100)
T ss_dssp C----SCSSCCEETTEECS---EEECCTTCEEEE
T ss_pred C----CCCCCEEECCEECc---eEECCCCCEEEE
Confidence 0 38999999999997 589999999976
No 23
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0
Probab=99.14 E-value=5e-11 Score=112.74 Aligned_cols=80 Identities=18% Similarity=0.231 Sum_probs=73.5
Q ss_pred ceeeeeecCCceeecCCCcccceEEccccccccceeEeeeccceeEEEEcCcccccccchhhHHHhhhcccccccccccc
Q 001181 60 VDSLTLEPDRPYSIGRASINCDFTFDNRLVSRQHCQILFDSSERKIYVLDGTFLLPAFSSVVNEFRKKRDKSLEDEEEDE 139 (1131)
Q Consensus 60 ~~~~~l~~d~~~~igr~~~~~d~~~~~~~vs~~hcqi~~d~~~~k~~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (1131)
.+.|+|.+..+.+|||++ +..|.|.|+|++||+|..|.....|+|.+
T Consensus 14 ~~~I~L~~g~~v~iGR~p---~t~I~DkrcSR~h~~L~~~~~~g~v~vk~------------------------------ 60 (102)
T 3kt9_A 14 HQRIRLPHLEAVVIGRGP---ETKITDKKCSRQQVQLKAECNKGYVKVKQ------------------------------ 60 (102)
T ss_dssp TCEEECCBTCEEEECSST---TTCCCCTTSCSSCEEEEEETTTTEEEEEE------------------------------
T ss_pred CCcEEcCCCCcEEeccCC---ccccccCcccCcceEEEEecCCCEEEEEE------------------------------
Confidence 356888888999999999 66788999999999999999999999999
Q ss_pred cceeeeeeccceEeeceEecccceEeecCCCeEEEEecC
Q 001181 140 GFSRVMVSLNGVFVNGIRLKSGIVRELNAGDEVLFVCRD 178 (1131)
Q Consensus 140 ~~~~~~~s~ng~fvng~r~~kg~~~el~~gd~v~~~~~~ 178 (1131)
..+|++||||++++||...+|+.||.+.|+-+.
T Consensus 61 ------lg~Np~~vng~~l~k~~~~~L~~GD~l~Ll~~~ 93 (102)
T 3kt9_A 61 ------VGVNPTSIDSVVIGKDQEVKLQPGQVLHMVNEL 93 (102)
T ss_dssp ------CSSSCCEETTEECCBTCEEEECTTCCEEEETTE
T ss_pred ------CcCCCCeECCEEcCCCCeEEeCCCCEEEEccCC
Confidence 789999999999999999999999999998754
No 24
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=99.13 E-value=7.3e-11 Score=112.04 Aligned_cols=71 Identities=32% Similarity=0.481 Sum_probs=61.3
Q ss_pred eeeeecCCceeecCCCcccceEEccccccccceeEeeeccceeEEEEcCcccccccchhhHHHhhhcccccccccccccc
Q 001181 62 SLTLEPDRPYSIGRASINCDFTFDNRLVSRQHCQILFDSSERKIYVLDGTFLLPAFSSVVNEFRKKRDKSLEDEEEDEGF 141 (1131)
Q Consensus 62 ~~~l~~d~~~~igr~~~~~d~~~~~~~vs~~hcqi~~d~~~~k~~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (1131)
.+.|.. .+++|||+. .||.++++..||++||+|.++. -++||.| +
T Consensus 25 ~~~l~~-~~~~IGR~~-~~di~l~d~~vSr~Ha~i~~~~--~~~~l~D-------------------------------l 69 (115)
T 2xt9_B 25 RFLLDQ-PTTSAGRHP-DSDIFLDDVTVSRRHAEFRLEG--GEFQVVD-------------------------------V 69 (115)
T ss_dssp EEEECS-SEEEEESST-TSSEECCSTTSCSSCEEEEEET--TEEEEEE-------------------------------C
T ss_pred EEEECC-CCEEECCCC-CCCEEeCCcccChhheEEEEEC--CEEEEEE-------------------------------C
Confidence 455553 489999998 7999999999999999999985 4788888 0
Q ss_pred eeeeeeccceEeeceEecccceEeecCCCeEEE
Q 001181 142 SRVMVSLNGVFVNGIRLKSGIVRELNAGDEVLF 174 (1131)
Q Consensus 142 ~~~~~s~ng~fvng~r~~kg~~~el~~gd~v~~ 174 (1131)
-|+|||||||.+|. .++|+.||+|.|
T Consensus 70 ----~S~nGt~vng~~i~---~~~L~~gd~i~i 95 (115)
T 2xt9_B 70 ----GSLNGTYVNREPVD---SAVLANGDEVQI 95 (115)
T ss_dssp ----SCSSCEEETTEECS---EEEECTTCEEEE
T ss_pred ----CCCCCeEECCEEcc---eEECCCCCEEEE
Confidence 38999999999998 589999999987
No 25
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*
Probab=99.09 E-value=6.3e-11 Score=114.28 Aligned_cols=73 Identities=27% Similarity=0.449 Sum_probs=62.1
Q ss_pred eeeeeecCCceeecCCCcccceEEccccccccceeEeeeccceeEEEEcCcccccccchhhHHHhhhccccccccccccc
Q 001181 61 DSLTLEPDRPYSIGRASINCDFTFDNRLVSRQHCQILFDSSERKIYVLDGTFLLPAFSSVVNEFRKKRDKSLEDEEEDEG 140 (1131)
Q Consensus 61 ~~~~l~~d~~~~igr~~~~~d~~~~~~~vs~~hcqi~~d~~~~k~~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (1131)
..+.|.. .+++|||+. .||+++++..||++||+|.++. -.+||.|
T Consensus 26 ~~~~l~~-~~~~IGR~~-~~di~l~d~~VSr~Ha~i~~~~--~~~~l~D------------------------------- 70 (128)
T 1r21_A 26 PHFPLSL-STCLFGRGI-ECDIRIQLPVVSKQHCKIEIHE--QEAILHN------------------------------- 70 (128)
T ss_dssp EEEECCS-SEEEEESST-TSSEECCCTTSCTTCEEEEECS--SCEEECC-------------------------------
T ss_pred eEEEECC-CCEEECCCC-CCCEEECCCCCChhHEEEEEEC--CEEEEEE-------------------------------
Confidence 3455543 589999998 6999999999999999999986 4688888
Q ss_pred ceeeeeeccceEeeceEecccceEeecCCCeEEE
Q 001181 141 FSRVMVSLNGVFVNGIRLKSGIVRELNAGDEVLF 174 (1131)
Q Consensus 141 ~~~~~~s~ng~fvng~r~~kg~~~el~~gd~v~~ 174 (1131)
+ -|+|||||||.+|.+ .++|+.||+|.|
T Consensus 71 l----~S~nGt~vNg~~i~~--~~~L~~Gd~i~i 98 (128)
T 1r21_A 71 F----SSTNPTQVNGSVIDE--PVRLKHGDVITI 98 (128)
T ss_dssp C----CSSSCCEETTEECSS--CEECCTTEEEEC
T ss_pred C----CCCCCEEECCEECCC--cEEcCCCCEEEE
Confidence 1 389999999999984 689999999987
No 26
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis}
Probab=99.05 E-value=1.6e-10 Score=116.53 Aligned_cols=72 Identities=28% Similarity=0.423 Sum_probs=60.9
Q ss_pred eeeeeecCCceeecCCCcccceEEccccccccceeEeeeccceeEEEEcCcccccccchhhHHHhhhccccccccccccc
Q 001181 61 DSLTLEPDRPYSIGRASINCDFTFDNRLVSRQHCQILFDSSERKIYVLDGTFLLPAFSSVVNEFRKKRDKSLEDEEEDEG 140 (1131)
Q Consensus 61 ~~~~l~~d~~~~igr~~~~~d~~~~~~~vs~~hcqi~~d~~~~k~~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (1131)
..+.|..+ .++|||+. .||++|++..||++||+|.++.. +++|.|
T Consensus 78 ~~~~L~~~-~~~IGR~~-~~dI~L~d~~VSr~HA~I~~~~~--~~~l~D------------------------------- 122 (157)
T 3oun_A 78 RTYQLREG-SNIIGRGQ-DAQFRLPDTGVSRRHLEIRWDGQ--VALLAD------------------------------- 122 (157)
T ss_dssp CEEECCSE-EEEEESST-TCSEECCCTTSCTTCEEEEECSS--CEEEEE-------------------------------
T ss_pred eEEEECCC-cEEEEeCC-CCCEEeCCCCcChhHEEEEEECC--EEEEEE-------------------------------
Confidence 34455443 59999988 89999999999999999999865 588888
Q ss_pred ceeeeeeccceEeeceEecccceEeecCCCeEEE
Q 001181 141 FSRVMVSLNGVFVNGIRLKSGIVRELNAGDEVLF 174 (1131)
Q Consensus 141 ~~~~~~s~ng~fvng~r~~kg~~~el~~gd~v~~ 174 (1131)
+ -|+|||||||.||. .++|..||+|.|
T Consensus 123 l----gStNGT~VNG~~i~---~~~L~~GD~I~l 149 (157)
T 3oun_A 123 L----NSTNGTTVNNAPVQ---EWQLADGDVIRL 149 (157)
T ss_dssp C----SCSSCCEETTEECS---EEECCTTCEEEE
T ss_pred C----CCCCCeEECCEECc---eEECCCCCEEEE
Confidence 1 38999999999997 589999999976
No 27
>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A*
Probab=99.05 E-value=1.9e-10 Score=110.14 Aligned_cols=80 Identities=23% Similarity=0.334 Sum_probs=72.8
Q ss_pred ceeeeeecC-CceeecCCCcccceEEccccccccceeEeeeccceeEEEEcCcccccccchhhHHHhhhccccccccccc
Q 001181 60 VDSLTLEPD-RPYSIGRASINCDFTFDNRLVSRQHCQILFDSSERKIYVLDGTFLLPAFSSVVNEFRKKRDKSLEDEEED 138 (1131)
Q Consensus 60 ~~~~~l~~d-~~~~igr~~~~~d~~~~~~~vs~~hcqi~~d~~~~k~~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (1131)
.+.|+|.+| .+.+|||++ +..|.|.|+|+|||+|-.|..+..|.+.+
T Consensus 19 ~~~I~Lp~~~g~~viGR~p---~t~I~DkrcSR~hv~L~ad~~~~~v~vk~----------------------------- 66 (110)
T 2brf_A 19 APPIFLPSDGQALVLGRGP---LTQVTDRKCSRTQVELVADPETRTVAVKQ----------------------------- 66 (110)
T ss_dssp SCCEECCSTTCCEEECSBT---TTTBCCTTSCSSCEEEEEETTTTEEEEEE-----------------------------
T ss_pred CCcEEeccCCCCEEEcCCC---CcccccccceeeeEEEEEecCCCEEEEEE-----------------------------
Confidence 348999877 599999999 77899999999999999999999999999
Q ss_pred ccceeeeeeccceEeeceEecccceEeecCCCeEEEEecC
Q 001181 139 EGFSRVMVSLNGVFVNGIRLKSGIVRELNAGDEVLFVCRD 178 (1131)
Q Consensus 139 ~~~~~~~~s~ng~fvng~r~~kg~~~el~~gd~v~~~~~~ 178 (1131)
+.+|++|+||++++||..++|+.||.+.|+-+.
T Consensus 67 -------lG~Np~~vng~~l~k~~~~~L~~GD~leLl~g~ 99 (110)
T 2brf_A 67 -------LGVNPSTTGTQELKPGLEGSLGVGDTLYLVNGL 99 (110)
T ss_dssp -------CSSSCCEEC-CBCCTTCEEEEETTCEEEEETTE
T ss_pred -------cccCCcEECCEEcCCCCEEEecCCCEEEEccCC
Confidence 789999999999999999999999999998653
No 28
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Probab=99.03 E-value=1.9e-10 Score=113.92 Aligned_cols=71 Identities=28% Similarity=0.464 Sum_probs=60.2
Q ss_pred eeeeecCCceeecCCCcccceEEccccccccceeEeeeccceeEEEEcCcccccccchhhHHHhhhcccccccccccccc
Q 001181 62 SLTLEPDRPYSIGRASINCDFTFDNRLVSRQHCQILFDSSERKIYVLDGTFLLPAFSSVVNEFRKKRDKSLEDEEEDEGF 141 (1131)
Q Consensus 62 ~~~l~~d~~~~igr~~~~~d~~~~~~~vs~~hcqi~~d~~~~k~~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (1131)
.+.|. ...++|||+. .||.++++..||++||+|.++. .+++|.| +
T Consensus 60 ~~~L~-~~~~~IGR~~-~~di~l~d~~VSr~Ha~I~~~~--~~~~l~D-------------------------------l 104 (143)
T 2kb3_A 60 RFLLD-QPTTTAGRHP-ESDIFLDDVTVSRRHAEFRINE--GEFEVVD-------------------------------V 104 (143)
T ss_dssp EEEEC-SSEEEESSCT-TCSBCCCCSSCCSSSEEEEEET--TEEEEEE-------------------------------S
T ss_pred EEEeC-CCCeeccCCC-CCCEEeCCCCcChhhEEEEEEC--CEEEEEE-------------------------------C
Confidence 34443 3489999998 7999999999999999999964 4788888 0
Q ss_pred eeeeeeccceEeeceEecccceEeecCCCeEEE
Q 001181 142 SRVMVSLNGVFVNGIRLKSGIVRELNAGDEVLF 174 (1131)
Q Consensus 142 ~~~~~s~ng~fvng~r~~kg~~~el~~gd~v~~ 174 (1131)
-|+|||||||.+|. .+.|+.||+|.|
T Consensus 105 ----gS~NGT~VNg~~i~---~~~L~~GD~I~i 130 (143)
T 2kb3_A 105 ----GSLNGTYVNREPRN---AQVMQTGDEIQI 130 (143)
T ss_dssp ----CCSSCCEETTEECS---EEECCTTEEEEE
T ss_pred ----CCcCCeEECCEEcc---eEECCCCCEEEE
Confidence 38999999999998 579999999986
No 29
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A
Probab=99.01 E-value=2.3e-10 Score=115.75 Aligned_cols=70 Identities=33% Similarity=0.477 Sum_probs=60.2
Q ss_pred eeeecCCceeecCCCcccceEEccccccccceeEeeeccceeEEEEcCcccccccchhhHHHhhhcccccccccccccce
Q 001181 63 LTLEPDRPYSIGRASINCDFTFDNRLVSRQHCQILFDSSERKIYVLDGTFLLPAFSSVVNEFRKKRDKSLEDEEEDEGFS 142 (1131)
Q Consensus 63 ~~l~~d~~~~igr~~~~~d~~~~~~~vs~~hcqi~~d~~~~k~~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (1131)
+.|. ...++|||.. .||+++++..||++||+|.++. .++||.|-
T Consensus 70 ~~L~-~~~~~IGR~~-~~di~l~d~~VSr~HA~I~~~~--~~~~l~Dl-------------------------------- 113 (162)
T 2kfu_A 70 FLLD-QAITSAGRHP-DSDIFLDDVTVSRRHAEFRLEN--NEFNVVDV-------------------------------- 113 (162)
T ss_dssp EETT-SSEEEEESCS-SSSEESTTTSSSSCSEEEEEET--TEEEEECC--------------------------------
T ss_pred EEEC-CCCEEECCCC-CCCEEECCCCcChhhEEEEEEC--CEEEEEEC--------------------------------
Confidence 3443 3589999998 7999999999999999999975 47888881
Q ss_pred eeeeeccceEeeceEecccceEeecCCCeEEE
Q 001181 143 RVMVSLNGVFVNGIRLKSGIVRELNAGDEVLF 174 (1131)
Q Consensus 143 ~~~~s~ng~fvng~r~~kg~~~el~~gd~v~~ 174 (1131)
-|+|||||||.+|. .++|+.||+|.|
T Consensus 114 ---gS~NGT~VNg~~i~---~~~L~~GD~I~i 139 (162)
T 2kfu_A 114 ---GSLNGTYVNREPVD---SAVLANGDEVQI 139 (162)
T ss_dssp ---CCSSCEEETTBCCS---EEECCSSCEEEE
T ss_pred ---CCCCCeEECCEEcc---eEECCCCCEEEE
Confidence 38999999999998 489999999987
No 30
>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domai; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2
Probab=98.99 E-value=3.7e-10 Score=112.17 Aligned_cols=81 Identities=23% Similarity=0.316 Sum_probs=74.5
Q ss_pred ceeeeeecC-CceeecCCCcccceEEccccccccceeEeeeccceeEEEEcCcccccccchhhHHHhhhccccccccccc
Q 001181 60 VDSLTLEPD-RPYSIGRASINCDFTFDNRLVSRQHCQILFDSSERKIYVLDGTFLLPAFSSVVNEFRKKRDKSLEDEEED 138 (1131)
Q Consensus 60 ~~~~~l~~d-~~~~igr~~~~~d~~~~~~~vs~~hcqi~~d~~~~k~~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (1131)
.+.|+|..| .+.+|||+. +..|.|.|+|+|||+|-+|..+..|.|.+
T Consensus 19 ~~~I~Lp~~~g~vvIGRgP---et~ItDkRcSR~qv~L~ad~~~g~V~Vk~----------------------------- 66 (143)
T 1yj5_C 19 PPPIFLPSDGQALVLGRGP---LTQVTDRKCSRNQVELIADPESRTVAVKQ----------------------------- 66 (143)
T ss_dssp CCCEECCTTTCEEEECSBT---TTTBCCSSSCSSCEEEEEETTTTEEEEEE-----------------------------
T ss_pred CCcEEeccCCCCEEEcCCC---ccccccccccceeEEEEEecCCCeEEEEE-----------------------------
Confidence 348999867 599999999 88899999999999999999999999998
Q ss_pred ccceeeeeeccceEeeceEecccceEeecCCCeEEEEecCC
Q 001181 139 EGFSRVMVSLNGVFVNGIRLKSGIVRELNAGDEVLFVCRDE 179 (1131)
Q Consensus 139 ~~~~~~~~s~ng~fvng~r~~kg~~~el~~gd~v~~~~~~~ 179 (1131)
+.+|++||||++|.||..++|+.||.+.|+-|..
T Consensus 67 -------lG~NP~~vng~~L~k~~~~~L~~GD~LeLl~g~y 100 (143)
T 1yj5_C 67 -------LGVNPSTVGVHELKPGLSGSLSLGDVLYLVNGLY 100 (143)
T ss_dssp -------CSSSCCEETTEECCTTCEEEECTTCEEESSSSCS
T ss_pred -------cccCCcEECCEEecCCCEEEecCCCEEEEecCCc
Confidence 7889999999999999999999999999987654
No 31
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=98.96 E-value=3.5e-10 Score=108.22 Aligned_cols=72 Identities=15% Similarity=0.203 Sum_probs=59.3
Q ss_pred eeeecCCceeecCC-CcccceEEccccccccceeEeeeccceeEEEEcCcccccccchhhHHHhhhcccccccccccccc
Q 001181 63 LTLEPDRPYSIGRA-SINCDFTFDNRLVSRQHCQILFDSSERKIYVLDGTFLLPAFSSVVNEFRKKRDKSLEDEEEDEGF 141 (1131)
Q Consensus 63 ~~l~~d~~~~igr~-~~~~d~~~~~~~vs~~hcqi~~d~~~~k~~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (1131)
+.|.+. .++|||. ...||+++++..||++||+|.++.. .++|.|-
T Consensus 31 ~~L~~~-~~~IGr~r~~~~di~l~~~~vSr~Ha~i~~~~~--~~~l~dl------------------------------- 76 (120)
T 1wln_A 31 YRLQLS-VTEVGTEKFDDNSIQLFGPGIQPHHCDLTNMDG--VVTVTPR------------------------------- 76 (120)
T ss_dssp EECCSE-EEECSSSCCSTTCCCCCCTTCCSSCEEEEESSS--CEEEEES-------------------------------
T ss_pred EEECCC-CEEECCCCCCCCcEEECCCCCchhheEEEEcCC--EEEEEEC-------------------------------
Confidence 444433 5899985 3799999999999999999999743 6888881
Q ss_pred eeeeeeccceEeeceEecccceEeecCCCeEEE
Q 001181 142 SRVMVSLNGVFVNGIRLKSGIVRELNAGDEVLF 174 (1131)
Q Consensus 142 ~~~~~s~ng~fvng~r~~kg~~~el~~gd~v~~ 174 (1131)
-|+|||||||.||. ..++|+.||+|.|
T Consensus 77 ----~S~ngt~vNg~~i~--~~~~L~~GD~I~i 103 (120)
T 1wln_A 77 ----SMDAETYVDGQRIS--ETTMLQSGMRLQF 103 (120)
T ss_dssp ----CSSSCEEETSCBCS--SCEEECTTCEEEE
T ss_pred ----CCCCCEEECCEEcC--CCEECCCCCEEEE
Confidence 37999999999998 4689999999976
No 32
>1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif; NMR {Mus musculus} SCOP: b.26.1.2
Probab=98.95 E-value=2.3e-10 Score=110.81 Aligned_cols=82 Identities=23% Similarity=0.315 Sum_probs=74.4
Q ss_pred ceeeeeecC-CceeecCCCcccceEEccccccccceeEeeeccceeEEEEcCcccccccchhhHHHhhhccccccccccc
Q 001181 60 VDSLTLEPD-RPYSIGRASINCDFTFDNRLVSRQHCQILFDSSERKIYVLDGTFLLPAFSSVVNEFRKKRDKSLEDEEED 138 (1131)
Q Consensus 60 ~~~~~l~~d-~~~~igr~~~~~d~~~~~~~vs~~hcqi~~d~~~~k~~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (1131)
.+.|+|..| .+.+|||++ +..|.|.|+|||||+|-+|..+..|.|.+
T Consensus 26 ~~~I~Lp~~~g~~viGRgp---~t~I~DkrcSR~qv~L~ad~~~~~v~vk~----------------------------- 73 (119)
T 1ujx_A 26 PPPIFLPSDGQALVLGRGP---LTQVTDRKCSRNQVELIADPESRTVAVKQ----------------------------- 73 (119)
T ss_dssp CCCCCCCTTSCCEEESBBT---TTTBCCTTSCTTSEEEEEETTTTEEEEEE-----------------------------
T ss_pred CCcEEeccCCCCEEEcCCC---CcccccccccceeEEEEEecCCCEEEEEE-----------------------------
Confidence 347888867 599999999 88899999999999999999999999998
Q ss_pred ccceeeeeeccceEeeceEecccceEeecCCCeEEEEecCCc
Q 001181 139 EGFSRVMVSLNGVFVNGIRLKSGIVRELNAGDEVLFVCRDES 180 (1131)
Q Consensus 139 ~~~~~~~~s~ng~fvng~r~~kg~~~el~~gd~v~~~~~~~~ 180 (1131)
+.+|++||||++++|+..++|+.||.+.|+-+...
T Consensus 74 -------lG~NP~~vng~~l~k~~~~~L~~GD~l~Ll~g~y~ 108 (119)
T 1ujx_A 74 -------LGVNPSTVGVQELKPGLSGSLSLGDVLYLVNGLYP 108 (119)
T ss_dssp -------CSSSCCBSSSSBCCTTCEEEEETTCCCBCBTTBSC
T ss_pred -------cccCCcEECCEEecCCCEEEecCCCEEEEecCCeE
Confidence 78899999999999999999999999999876543
No 33
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=98.94 E-value=1.3e-09 Score=109.02 Aligned_cols=76 Identities=20% Similarity=0.349 Sum_probs=62.2
Q ss_pred eeeeecCCceeecCCC--cccceEEccccccccceeEeeeccc--eeEEEEcCcccccccchhhHHHhhhcccccccccc
Q 001181 62 SLTLEPDRPYSIGRAS--INCDFTFDNRLVSRQHCQILFDSSE--RKIYVLDGTFLLPAFSSVVNEFRKKRDKSLEDEEE 137 (1131)
Q Consensus 62 ~~~l~~d~~~~igr~~--~~~d~~~~~~~vs~~hcqi~~d~~~--~k~~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (1131)
+++.-....++|||+. ..||+++++..||++||.|.++... ..++++|-
T Consensus 54 lvy~L~~g~t~IGR~~~~~~~DI~L~~~~Vs~~H~~i~~~~~~~~~~~~~~d~--------------------------- 106 (154)
T 4ejq_A 54 LLYYIKDGITRVGREDGERRQDIVLSGHFIKEEHCVFRSDSRGGSEAVVTLEP--------------------------- 106 (154)
T ss_dssp EEEECCSEEEEEECSSCSSCCSEECCCTTCCSEEEEEEEECTTSSSCEEEEEE---------------------------
T ss_pred EEEEeCCCCEEEcCCCCCCCCCEEECCCCcccccEEEEEecCCCceeEEEEec---------------------------
Confidence 3444455589999986 5899999999999999999998753 35666661
Q ss_pred cccceeeeeeccceEeeceEecccceEeecCCCeEEE
Q 001181 138 DEGFSRVMVSLNGVFVNGIRLKSGIVRELNAGDEVLF 174 (1131)
Q Consensus 138 ~~~~~~~~~s~ng~fvng~r~~kg~~~el~~gd~v~~ 174 (1131)
.|.|||||||.+|. ..++|+.||+|.|
T Consensus 107 --------~S~ngt~VNG~~i~--~~~~L~~GD~I~~ 133 (154)
T 4ejq_A 107 --------CEGADTYVNGKKVT--EPSILRSGNRIIM 133 (154)
T ss_dssp --------CTTCCEEETTEECC--SCEECCTTCEEEE
T ss_pred --------CCCCceEECCEEcC--CceECCCCCEEEE
Confidence 58999999999995 3679999999987
No 34
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=98.93 E-value=9.9e-10 Score=123.04 Aligned_cols=83 Identities=30% Similarity=0.372 Sum_probs=67.2
Q ss_pred CccccccCCCCcceeeeeecCCceeecCCCcccceEEccccccccceeEeeeccceeEEEEcCcccccccchhhHHHhhh
Q 001181 48 HLPLVSTATGSPVDSLTLEPDRPYSIGRASINCDFTFDNRLVSRQHCQILFDSSERKIYVLDGTFLLPAFSSVVNEFRKK 127 (1131)
Q Consensus 48 ~~~~~~~~~~~~~~~~~l~~d~~~~igr~~~~~d~~~~~~~vs~~hcqi~~d~~~~k~~i~d~~~~~~~~~~~~~~~~~~ 127 (1131)
+..|+...+|. .+.|.. .+++|||+. .||+++++..||++||+|.++.. ++||.|-
T Consensus 289 ~~~l~~~~~g~---~~~l~~-~~~~iGR~~-~~di~l~~~~vSr~Ha~i~~~~~--~~~l~Dl----------------- 344 (388)
T 2ff4_A 289 VAYLHDIASGR---GYPLQA-AATRIGRLH-DNDIVLDSANVSRHHAVIVDTGT--NYVINDL----------------- 344 (388)
T ss_dssp CCEEEETTTCC---EEECCS-SEEEEESST-TSSEECCCTTSCTTCEEEEECSS--CEEEEEC-----------------
T ss_pred eEEEEECCCCc---EEEECC-CCEEEecCC-CCeEEECCCccChhHeEEEEECC--EEEEEEC-----------------
Confidence 34455555664 444554 389999998 79999999999999999999764 5888881
Q ss_pred cccccccccccccceeeeeeccceEeeceEecccceEeecCCCeEEE
Q 001181 128 RDKSLEDEEEDEGFSRVMVSLNGVFVNGIRLKSGIVRELNAGDEVLF 174 (1131)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~s~ng~fvng~r~~kg~~~el~~gd~v~~ 174 (1131)
-|+|||||||.+|. ..+.|+.||+|.|
T Consensus 345 ------------------~S~nGt~vng~~i~--~~~~L~~gd~i~~ 371 (388)
T 2ff4_A 345 ------------------RSSNGVHVQHERIR--SAVTLNDGDHIRI 371 (388)
T ss_dssp ------------------SCSSCCEETTEECS--SEEEECTTCEEEE
T ss_pred ------------------CCCCCeEECCEECC--CceECCCCCEEEE
Confidence 48999999999995 5789999999987
No 35
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=98.85 E-value=3.7e-09 Score=102.84 Aligned_cols=65 Identities=26% Similarity=0.368 Sum_probs=56.1
Q ss_pred ceeecCCCcccceEEccccccccceeEeeeccceeEEEEcCcccccccchhhHHHhhhcccccccccccccceeeeeecc
Q 001181 70 PYSIGRASINCDFTFDNRLVSRQHCQILFDSSERKIYVLDGTFLLPAFSSVVNEFRKKRDKSLEDEEEDEGFSRVMVSLN 149 (1131)
Q Consensus 70 ~~~igr~~~~~d~~~~~~~vs~~hcqi~~d~~~~k~~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n 149 (1131)
..+|||+. .||.++++..||++||.|..+. .-.++|.| .+.|
T Consensus 49 ~t~IGR~~-~~DI~L~~~~Vs~~Ha~I~~~~-~g~~~l~d------------------------------------l~~n 90 (124)
T 3fm8_A 49 HTLIGSAN-SQDIQLCGMGILPEHCIIDITS-EGQVMLTP------------------------------------QKNT 90 (124)
T ss_dssp EEEEESST-TCSEECCSTTCCSSCEEEEECT-TSCEEEEE------------------------------------CTTC
T ss_pred CeEECCCC-CCCEEECCCCeecceEEEEECC-CCeEEEEE------------------------------------CCCC
Confidence 37999998 7999999999999999999853 23578888 5689
Q ss_pred ceEeeceEecccceEeecCCCeEEE
Q 001181 150 GVFVNGIRLKSGIVRELNAGDEVLF 174 (1131)
Q Consensus 150 g~fvng~r~~kg~~~el~~gd~v~~ 174 (1131)
||||||.+|. ..++|+.||+|.|
T Consensus 91 gt~VNG~~V~--~~~~L~~GD~I~l 113 (124)
T 3fm8_A 91 RTFVNGSSVS--SPIQLHHGDRILW 113 (124)
T ss_dssp CEEETTEECC--SCEEECTTCEEEE
T ss_pred CEEECCEEcC--CcEECCCCCEEEE
Confidence 9999999997 4689999999986
No 36
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster}
Probab=98.80 E-value=4e-09 Score=99.45 Aligned_cols=69 Identities=19% Similarity=0.341 Sum_probs=57.4
Q ss_pred ceeeeeecCCceeecCCCcccceEEccccccccceeEeeeccceeEEEEcCcccccccchhhHHHhhhcccccccccccc
Q 001181 60 VDSLTLEPDRPYSIGRASINCDFTFDNRLVSRQHCQILFDSSERKIYVLDGTFLLPAFSSVVNEFRKKRDKSLEDEEEDE 139 (1131)
Q Consensus 60 ~~~~~l~~d~~~~igr~~~~~d~~~~~~~vs~~hcqi~~d~~~~k~~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (1131)
.+++.|+||+.|+|||.+ .|++.+++..||+.|+.|-.+.. .+|+
T Consensus 12 ~p~v~l~~~~~~rIGR~~-~~~l~LddpsVs~~HAti~~~~~--G~~~-------------------------------- 56 (102)
T 3uv0_A 12 LPAILLKADTIYRIGRQK-GLEISIADESMELAHATACILRR--GVVR-------------------------------- 56 (102)
T ss_dssp SCCEECCTTCCEEEESST-TSTEECCCTTSCTTCEEEEEEET--TEEE--------------------------------
T ss_pred cccEEeecCcEEEEcCCC-CCcEEECCcccccceEEEEecCC--ceEE--------------------------------
Confidence 357899999999999997 99999999999999999865543 2333
Q ss_pred cceeeeeeccc-eEeeceEecccceEeecCCCe
Q 001181 140 GFSRVMVSLNG-VFVNGIRLKSGIVRELNAGDE 171 (1131)
Q Consensus 140 ~~~~~~~s~ng-~fvng~r~~kg~~~el~~gd~ 171 (1131)
+ -|+|| |||||.|+ ..+.|..||.
T Consensus 57 ----l-~S~nGtVFVNGqrv---~~~~I~~gDt 81 (102)
T 3uv0_A 57 ----L-AALVGKIFVNDQEE---TVVDIGMENA 81 (102)
T ss_dssp ----E-EESSSCEEETTEEE---SEEEECGGGC
T ss_pred ----E-EeccCcEEECCEEe---eeEEccCCcc
Confidence 2 39999 79999999 5777888886
No 37
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=98.68 E-value=1.3e-08 Score=113.72 Aligned_cols=77 Identities=31% Similarity=0.498 Sum_probs=63.5
Q ss_pred eeeeecCCceeecCCCcccceEEcccc---------ccccceeEeeecc---ceeEEEEcCcccccccchhhHHHhhhcc
Q 001181 62 SLTLEPDRPYSIGRASINCDFTFDNRL---------VSRQHCQILFDSS---ERKIYVLDGTFLLPAFSSVVNEFRKKRD 129 (1131)
Q Consensus 62 ~~~l~~d~~~~igr~~~~~d~~~~~~~---------vs~~hcqi~~d~~---~~k~~i~d~~~~~~~~~~~~~~~~~~~~ 129 (1131)
.+.|. +..|+|||++ .||+++++.. ||++||+|..+.. ...+||.|
T Consensus 22 ~~~l~-~~~~~iGR~~-~~~~~~~~~~~~~~~~~~~vS~~H~~i~~~~~~~~~~~~~i~D-------------------- 79 (419)
T 3i6u_A 22 NLECV-NDNYWFGRDK-SCEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIED-------------------- 79 (419)
T ss_dssp CEEEC-SSEEEEESST-TSSEETTCTTGGGCSGGGGSCTTCEEEECCEETTTEECCEEEE--------------------
T ss_pred ceEec-CCCEEecCCC-ccCEEECCcccccccccccccccceEEEEEcCCCCceEEEEEE--------------------
Confidence 45553 4579999997 8999999965 5999999976532 23478888
Q ss_pred cccccccccccceeeeeeccceEeeceEecccceEeecCCCeEEEEe
Q 001181 130 KSLEDEEEDEGFSRVMVSLNGVFVNGIRLKSGIVRELNAGDEVLFVC 176 (1131)
Q Consensus 130 ~~~~~~~~~~~~~~~~~s~ng~fvng~r~~kg~~~el~~gd~v~~~~ 176 (1131)
.|+|||||||.++.||..+.|..||++++-.
T Consensus 80 ----------------~S~nGt~vn~~~~~~~~~~~l~~~d~i~~~~ 110 (419)
T 3i6u_A 80 ----------------HSGNGTFVNTELVGKGKRRPLNNNSEIALSL 110 (419)
T ss_dssp ----------------CCSSCEEETTEECCTTCEEECCTTEEEEESS
T ss_pred ----------------CCcCCceECcccccCCCcccCCCCCEeeeec
Confidence 6899999999999999999999999998743
No 38
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=98.53 E-value=5.7e-08 Score=107.34 Aligned_cols=95 Identities=17% Similarity=0.189 Sum_probs=69.5
Q ss_pred eeeeeecCCceeecCCCc-cc-ceEEccccccccceeEeeeccc---------eeEEEEcCcccccccchhhHHHhhhcc
Q 001181 61 DSLTLEPDRPYSIGRASI-NC-DFTFDNRLVSRQHCQILFDSSE---------RKIYVLDGTFLLPAFSSVVNEFRKKRD 129 (1131)
Q Consensus 61 ~~~~l~~d~~~~igr~~~-~~-d~~~~~~~vs~~hcqi~~d~~~---------~k~~i~d~~~~~~~~~~~~~~~~~~~~ 129 (1131)
..+.|.|.. |+|||.+. .+ +.+++|..|||||+.|.|+... -++||.|
T Consensus 14 kr~~L~pg~-YlIGR~~~~~~~lI~idD~SISRqHA~I~v~~v~~~dg~~~~~~~l~I~D-------------------- 72 (325)
T 3huf_A 14 KSRILFPGT-YIVGRNVSDDSSHIQVISKSISKRHARFTILTPSEKDYFTGGPCEFEVKD-------------------- 72 (325)
T ss_dssp CCEEECSEE-EEEESSCCCBTTEEECCCTTSCSSCEEEEECCCCHHHHHHCCCCCEEEEE--------------------
T ss_pred eEEEecCCe-EEECCCCCccCceeecCCCCccccceEEEEecccccccccCCcceEEEEE--------------------
Confidence 346688888 99999984 33 4599999999999999998532 2688888
Q ss_pred cccccccccccceeeeeeccceEeeceEecccceEeec-CCCeEEEEecCCcccccCceeeEEEEEEEe
Q 001181 130 KSLEDEEEDEGFSRVMVSLNGVFVNGIRLKSGIVRELN-AGDEVLFVCRDESLCRLQTRIGFLILGIIF 197 (1131)
Q Consensus 130 ~~~~~~~~~~~~~~~~~s~ng~fvng~r~~kg~~~el~-~gd~v~~~~~~~~~~~~~~~~~f~~~~i~~ 197 (1131)
+ -|.|||||||.+|+ |...+|. .||+|.|= .|..--||.+...-+.|
T Consensus 73 -----------L----gSknGTfVNGerI~-~~~~~L~~dgd~I~fG-----~~~~~fRl~W~P~Vl~~ 120 (325)
T 3huf_A 73 -----------L----DTKFGTKVNEKVVG-QNGDSYKEKDLKIQLG-----KCPFTINAYWRSMCIQF 120 (325)
T ss_dssp -----------C----SCSSCEEETTEECC-TTCEEECSSEEEEEET-----TCSSCEEEEECCCCEEE
T ss_pred -----------C----CCCCCEEECCEECC-CceeeecCCCCEEEec-----CCcceEEEEEeeeEEEe
Confidence 1 48999999999996 5556775 58888873 34444466665444444
No 39
>4a0e_A YSCD, type III secretion protein; transport protein, SAD phasing, type III secretion system; 2.04A {Yersinia pestis} PDB: 4d9v_A
Probab=98.34 E-value=4.1e-07 Score=88.77 Aligned_cols=66 Identities=18% Similarity=0.334 Sum_probs=57.1
Q ss_pred CCceeecCCCcccceEEccccccccceeEeeeccceeEEEEcCcccccccchhhHHHhhhcccccccccccccceeeeee
Q 001181 68 DRPYSIGRASINCDFTFDNRLVSRQHCQILFDSSERKIYVLDGTFLLPAFSSVVNEFRKKRDKSLEDEEEDEGFSRVMVS 147 (1131)
Q Consensus 68 d~~~~igr~~~~~d~~~~~~~vs~~hcqi~~d~~~~k~~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 147 (1131)
+..++||.....||.|+.|+.||++||+|.++.. |+ .++-|
T Consensus 23 ~~~~~IGs~~~~~DLvL~D~~Vs~~H~~L~~~~~--------------------------------------g~-~L~~s 63 (123)
T 4a0e_A 23 HGRCVFGSDPLQSDIVLSDSEIAPVHLVLMVDEE--------------------------------------GI-RLTDS 63 (123)
T ss_dssp SEEEEEESCTTTCSEECCCTTSCSSCEEEEEETT--------------------------------------EE-EEEEE
T ss_pred CCcEEECCCCCCCCEEEeCCCccceeEEEEECCC--------------------------------------eE-EEEec
Confidence 4589999998899999999999999999998875 22 44568
Q ss_pred ccceEeeceEecccceEeecCCCeEEE
Q 001181 148 LNGVFVNGIRLKSGIVRELNAGDEVLF 174 (1131)
Q Consensus 148 ~ng~fvng~r~~kg~~~el~~gd~v~~ 174 (1131)
.||+|+||.++..++ +|.+|+.+.+
T Consensus 64 ~ngt~vdG~~v~~~~--~L~~g~~l~l 88 (123)
T 4a0e_A 64 AEPLLQEGLPVPLGT--LLRAGSCLEV 88 (123)
T ss_dssp SSCCEETTEECCTTC--BCCTTSCEEE
T ss_pred cCCEEECCEEccccc--ccCCCCEEEE
Confidence 999999999999887 8999998865
No 40
>2l1i_A HLTF protein; hiran domain, transcription factor, DNA repair, transc regulation, transcription, structural genomics, structural consortium, SGC; NMR {Homo sapiens}
Probab=97.97 E-value=4.6e-07 Score=88.19 Aligned_cols=101 Identities=21% Similarity=0.311 Sum_probs=76.7
Q ss_pred cCCccccceeeeeeccccccccccCCchhHHHHHHHHhccccccchhhhhhhhcCCCCCCCccccccccCCCCCCCCCcc
Q 001181 663 SDGKFLGSVETSVVGLSHLFRTAADSNGTQIKKLAAFLGKSFSAHGMLKILLRRNTNVPADANAVSVLVPNPDELSDGDC 742 (1131)
Q Consensus 663 ~~~~~~g~~~~s~~G~sH~f~~~~D~ng~~Lk~la~~l~~~~~~~g~~~~~l~rn~~ip~d~nav~~~v~~~d~~s~~~~ 742 (1131)
.+..++|++.+.|+|+.|.... | .-| ..+.|.|..+.|.|+|||.|+- .+.
T Consensus 6 ~~~~l~g~~~~~I~G~ry~~g~--------l------------~~G-~~l~L~REp~N~yD~nAI~V~~--------~~g 56 (122)
T 2l1i_A 6 VDSVLFGSLRGHVVGLRYYTGV--------V------------NNN-EMVALQRDPNNPYDKNAIKVNN--------VNG 56 (122)
T ss_dssp HTTCCCCBCCCCBCCSTTTTSC--------C------------CSS-SCEECCCCTTCTTHHHHHHCCC--------TTB
T ss_pred ceeEEEeEEEEEEEEEecccCC--------C------------CCC-CEEEEEECCCCCCChhHEEEEC--------CCC
Confidence 3457889999999999987221 1 123 3478999999999999999963 246
Q ss_pred cccCCCccccccccCCcccccccccccccchHHHHHHHhhccchheeeeecccCC
Q 001181 743 IQLGFMPRDIAKWVSPLWDIGFIRFSGFISRDEVLAAALEGISKKVQLILHVSQG 797 (1131)
Q Consensus 743 ~~~gf~~~~~a~~~s~l~d~g~~~~~g~~~p~~~l~~a~g~~~~k~ql~l~v~~g 797 (1131)
.|+||+||.+|+|++||+|+|.+++.|.|.. .+-+...-++||-++....
T Consensus 57 ~~vGYvPr~~a~~la~lmD~g~~~veg~v~~-----g~~~~~~~pi~l~~~~~~~ 106 (122)
T 2l1i_A 57 NQVGHLKKELAGALAYIMDNKLAQIEGVVPF-----GANNAFTMPLHMTFWGKEE 106 (122)
T ss_dssp GGGGGHHHHHHHHHHHHTTSCCEEEEEECCT-----TTTTTCCCCCEEEEEECHH
T ss_pred CEEEEecHHHHHHHHhhccCCeEEEEEEEec-----CCCCCCceeEEEEEEeChh
Confidence 7999999999999999999999999998742 1223444567777776533
No 41
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=97.95 E-value=1.4e-05 Score=82.34 Aligned_cols=70 Identities=19% Similarity=0.345 Sum_probs=55.2
Q ss_pred cCCceeecCCC--cccceEEccccccccceeEeeeccc---eeEEEEcCcccccccchhhHHHhhhcccccccccccccc
Q 001181 67 PDRPYSIGRAS--INCDFTFDNRLVSRQHCQILFDSSE---RKIYVLDGTFLLPAFSSVVNEFRKKRDKSLEDEEEDEGF 141 (1131)
Q Consensus 67 ~d~~~~igr~~--~~~d~~~~~~~vs~~hcqi~~d~~~---~k~~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (1131)
.+-..+|||.. ..||+++...-|+++||.|-.+... ..|++..
T Consensus 89 ~~g~t~VGr~~~~~~~dI~L~G~~I~~~Hc~i~~~~~~~~~~~vtl~p-------------------------------- 136 (184)
T 4egx_A 89 KDGITRVGREDGERRQDIVLSGHFIKEEHCVFRSDSRGGSEAVVTLEP-------------------------------- 136 (184)
T ss_dssp CSEEEEEECSSSSSCCSEECCSTTCCSEEEEEEEECCSSCSCEEEEEE--------------------------------
T ss_pred CCCcCcCCCCCcCCCCeEEECccccccccEEEEEcCCCCceEEEEEee--------------------------------
Confidence 34467999976 6899999999999999999887643 3344444
Q ss_pred eeeeeeccceEeeceEecccceEeecCCCeEEE
Q 001181 142 SRVMVSLNGVFVNGIRLKSGIVRELNAGDEVLF 174 (1131)
Q Consensus 142 ~~~~~s~ng~fvng~r~~kg~~~el~~gd~v~~ 174 (1131)
.+-+.|||||.+|. ..++|+.||+|.|
T Consensus 137 ----~~~a~t~VNG~~I~--~~~~L~~GDrI~l 163 (184)
T 4egx_A 137 ----CEGADTYVNGKKVT--EPSILRSGNRIIM 163 (184)
T ss_dssp ----CTTCCEEETTEECC--SCEECCTTCEEEE
T ss_pred ----CCCCeEEEcCEEcc--ccEEcCCCCEEEE
Confidence 23467999999996 4688999999976
No 42
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=96.52 E-value=0.0028 Score=67.60 Aligned_cols=63 Identities=14% Similarity=0.182 Sum_probs=45.1
Q ss_pred CCceeecCCCcccceEEccccccccceeEeeec----cceeEEEEcCcccccccchhhHHHhhhccccccccccccccee
Q 001181 68 DRPYSIGRASINCDFTFDNRLVSRQHCQILFDS----SERKIYVLDGTFLLPAFSSVVNEFRKKRDKSLEDEEEDEGFSR 143 (1131)
Q Consensus 68 d~~~~igr~~~~~d~~~~~~~vs~~hcqi~~d~----~~~k~~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (1131)
++..||||.. .||+++++. ++ =.+..+. ..-.|.++
T Consensus 91 ~~~itIG~~~-~~dI~l~~~-~~---~~~~~~~~~~~~~~~l~~l----------------------------------- 130 (238)
T 1wv3_A 91 QDTMTIGPNA-YDDMVIQSL-MN---AIIIKDFQSIQESQYVRIV----------------------------------- 130 (238)
T ss_dssp CSEEEEESST-TSSEECTTC-SS---CEEEECGGGHHHHCEEEEE-----------------------------------
T ss_pred CceEEEeCCC-CCeEEeCCC-ee---EEEEecccCcCCcEEEEEc-----------------------------------
Confidence 4499999976 999999988 54 2444441 12233333
Q ss_pred eeeeccce-EeeceEecccceEeec-CCCeEEE
Q 001181 144 VMVSLNGV-FVNGIRLKSGIVRELN-AGDEVLF 174 (1131)
Q Consensus 144 ~~~s~ng~-fvng~r~~kg~~~el~-~gd~v~~ 174 (1131)
-|+||+ ||||.+|.... .|. +||++.+
T Consensus 131 --~s~ngtvyvNg~~i~~~~--~L~~~GD~I~i 159 (238)
T 1wv3_A 131 --HDKNTDVYINYELQEQLT--NKAYIGDHIYV 159 (238)
T ss_dssp --CCTTCCEEETTEECCSSE--EEEETTCEEEE
T ss_pred --cCCCCCEEECCEEeccce--eccCCcCEEEE
Confidence 268995 99999996554 699 9999976
No 43
>3k2y_A Uncharacterized protein LP_0118; nucleic acid binding,zinc ION binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Lactobacillus plantarum}
Probab=94.14 E-value=0.0077 Score=57.75 Aligned_cols=79 Identities=28% Similarity=0.328 Sum_probs=55.7
Q ss_pred ccceeeeeeccccccccccCCchhHHHHHHHHhccccccchhhhhhhhcCCCCCCCccccccccCCCCCCCCCcccccCC
Q 001181 668 LGSVETSVVGLSHLFRTAADSNGTQIKKLAAFLGKSFSAHGMLKILLRRNTNVPADANAVSVLVPNPDELSDGDCIQLGF 747 (1131)
Q Consensus 668 ~g~~~~s~~G~sH~f~~~~D~ng~~Lk~la~~l~~~~~~~g~~~~~l~rn~~ip~d~nav~~~v~~~d~~s~~~~~~~gf 747 (1131)
+|-....|+|+.|.. |.. . ++.+. .-|+ .+.|.|..+.|-|+|||.|... +..|+|+
T Consensus 6 ~~l~~f~IaG~ryy~-------g~~--~---~~~~L--~~Ge-~l~L~rEp~N~yD~nAI~V~~~--------~g~kvGY 62 (109)
T 3k2y_A 6 VALDTVTVVGERYVD-------DIV--A---TLTTL--RVGM-AVLLQRESGNQYDDNAISVWTL--------QHAKLGY 62 (109)
T ss_dssp EEEEEEEEECGGGCT-------THH--H---HTTSC--CTTC-EEEEEECTTCSSCTTCEEEECT--------TCCEEEE
T ss_pred EEEEEEEEEeEEeec-------chh--h---hhhcC--CCCC-EEEEEECCCCcCChhHEEEEeC--------CCCEEEE
Confidence 345678899999871 111 0 01111 1222 5678999999999999999643 2468999
Q ss_pred CccccccccCCcccccccccccc
Q 001181 748 MPRDIAKWVSPLWDIGFIRFSGF 770 (1131)
Q Consensus 748 ~~~~~a~~~s~l~d~g~~~~~g~ 770 (1131)
+||++|+..+|+-|+|- .+.|.
T Consensus 63 vPr~~a~~la~lmd~g~-~l~a~ 84 (109)
T 3k2y_A 63 IARYQNQPYATLMDQGQ-RLYGI 84 (109)
T ss_dssp ECGGGHHHHHHHHHTTC-EEEEE
T ss_pred ecHHHHHHHHHHhhCCC-EEEEE
Confidence 99999999999999995 34444
No 44
>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae}
Probab=69.57 E-value=2.9 Score=48.44 Aligned_cols=44 Identities=23% Similarity=0.479 Sum_probs=34.1
Q ss_pred CCCCCcceEEEEeeecCCCCCceeEEEEcccccchhhcCCCccCCCCCCCCCCCccCCCCCCceeEeeeeeeEEEeCCC
Q 001181 951 RVGHPMHVKVAWRRFQSRTDTSLGWVYCGSHNFSAAAWGRPIQTPSTIKPNGSEKTKSSSSQRLHICNYELGIVFVFPP 1029 (1131)
Q Consensus 951 R~galPHiKty~Rrf~s~~~~~igWvYVGSANLSkAAWG~l~knr~~~Ks~~~~~~~ss~~~qL~IrNYELGVLfp~P~ 1029 (1131)
..+..+|.|+++. | + .|++|||+||...+|. .|+|+||++-.|.
T Consensus 358 ~~~~~lHaK~~vv---D--~---~~~~vGS~N~d~RS~~---------------------------lN~E~~~~i~~~~ 401 (458)
T 3hsi_A 358 DGDNTYHLKGVWV---D--D---RYILLTGNNLNPRAWR---------------------------LDAENGLLIYDPQ 401 (458)
T ss_dssp BTTBEECCCEEEE---T--T---TEEEEECCCCSHHHHH---------------------------TCEEEEEEEECTT
T ss_pred cCCCceeEEEEEE---C--C---eEEEecCCCCCcchhh---------------------------hCceeEEEEeCCc
Confidence 4578999999986 2 1 4999999999765552 4899999995553
No 45
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=63.85 E-value=3.9 Score=41.82 Aligned_cols=28 Identities=29% Similarity=0.218 Sum_probs=21.6
Q ss_pred CCCcceEEEEeeecCCCCCceeEEEEcccccchhhc
Q 001181 953 GHPMHVKVAWRRFQSRTDTSLGWVYCGSHNFSAAAW 988 (1131)
Q Consensus 953 galPHiKty~Rrf~s~~~~~igWvYVGSANLSkAAW 988 (1131)
...||.|+++. |. .++++||+|+|..|+
T Consensus 120 ~~~~H~K~~vi---D~-----~~~~~GS~N~t~~~~ 147 (196)
T 4ggj_A 120 LGYMHHKFAIV---DK-----KVLITGSLNWTTQAI 147 (196)
T ss_dssp SSCCCCEEEEE---TT-----TEEEEESCCBCHHHH
T ss_pred cccccCcEEEE---cc-----eEEEecCccCChhhh
Confidence 35689999996 21 379999999987664
No 46
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=61.09 E-value=8 Score=36.77 Aligned_cols=36 Identities=22% Similarity=0.222 Sum_probs=27.9
Q ss_pred ccccceEEeeeCCceEEEEeCCCCChhhh-cccccEEEEe
Q 001181 526 CHHPKLFVLQREDSIRVIVTSANLGAKQW-NAVTNTVWWQ 564 (1131)
Q Consensus 526 cHHSKMMLL~Y~D~LRVVI~TANLi~~DW-~~~TQ~VWiq 564 (1131)
.+|+|++|. |+-.++|.|+|+..... .+.+.++.+.
T Consensus 92 ~~H~K~~ii---D~~~~~iGS~N~~~~~~~~n~E~~~~i~ 128 (155)
T 1byr_A 92 IQHDKVIIV---DNVTVETGSFNFTKAAETKNSENAVVIW 128 (155)
T ss_dssp CCCCCEEEE---TTTEEEEESCCBSHHHHHTSCEEEEEEE
T ss_pred cccceEEEE---CCCEEEEECCCCCccccccCcccEEEEc
Confidence 699999999 66689999999997643 3456666665
No 47
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=59.67 E-value=3 Score=39.86 Aligned_cols=26 Identities=38% Similarity=0.565 Sum_probs=23.9
Q ss_pred eEeeceEec--ccceEeecCCCeEEEEe
Q 001181 151 VFVNGIRLK--SGIVRELNAGDEVLFVC 176 (1131)
Q Consensus 151 ~fvng~r~~--kg~~~el~~gd~v~~~~ 176 (1131)
|+|||..++ .|..-+|+.||+|+|+-
T Consensus 70 VLVNg~d~e~l~gldt~L~dgD~V~fis 97 (110)
T 2k9x_A 70 VLVNSCDAEVVGGMDYVLNDGDTVEFIS 97 (110)
T ss_dssp EEESSSBHHHHTSSCCCCCSSCEEEEEE
T ss_pred EEECCeeeeccCCcccCCCCcCEEEEeC
Confidence 899999887 79999999999999975
No 48
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=59.64 E-value=4.1 Score=38.83 Aligned_cols=26 Identities=38% Similarity=0.216 Sum_probs=20.6
Q ss_pred CCcceEEEEeeecCCCCCceeEEEEcccccchhh
Q 001181 954 HPMHVKVAWRRFQSRTDTSLGWVYCGSHNFSAAA 987 (1131)
Q Consensus 954 alPHiKty~Rrf~s~~~~~igWvYVGSANLSkAA 987 (1131)
..+|.|+++. | -.|+++||+|++..+
T Consensus 91 ~~~H~K~~ii---D-----~~~~~iGS~N~~~~~ 116 (155)
T 1byr_A 91 PIQHDKVIIV---D-----NVTVETGSFNFTKAA 116 (155)
T ss_dssp SCCCCCEEEE---T-----TTEEEEESCCBSHHH
T ss_pred ccccceEEEE---C-----CCEEEEECCCCCccc
Confidence 3699999985 2 148999999998754
No 49
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=55.64 E-value=5.8 Score=36.51 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=22.6
Q ss_pred eEeeceEec--ccceEeecCCCeEEEEec
Q 001181 151 VFVNGIRLK--SGIVRELNAGDEVLFVCR 177 (1131)
Q Consensus 151 ~fvng~r~~--kg~~~el~~gd~v~~~~~ 177 (1131)
++|||..++ .|....|+.||||.|+=+
T Consensus 67 v~VN~~~~~~~~~~d~~L~dgDeVa~~Pp 95 (99)
T 2qjl_A 67 TLINDTDWELEGEKDYILEDGDIISFTST 95 (99)
T ss_dssp EEETTEEGGGGTGGGCBCCTTCEEEEEEC
T ss_pred EEECCEEccccCCCCcCcCCCCEEEEECC
Confidence 788888776 578889999999999743
No 50
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=55.51 E-value=3.1 Score=39.89 Aligned_cols=28 Identities=21% Similarity=0.389 Sum_probs=24.8
Q ss_pred eEeeceEec--ccceEeecCCCeEEEEecC
Q 001181 151 VFVNGIRLK--SGIVRELNAGDEVLFVCRD 178 (1131)
Q Consensus 151 ~fvng~r~~--kg~~~el~~gd~v~~~~~~ 178 (1131)
|+|||..++ .|..-+|+.||+|+|+=.-
T Consensus 76 VlVN~~di~~l~gldt~L~dGDeV~iip~v 105 (114)
T 1wgk_A 76 VLINDADWELLGELDYQLQDQDSILFISTL 105 (114)
T ss_dssp EEESSSBHHHHCTTTCBCCSSEEEEEEECS
T ss_pred EEECCeeeeccCCcCcCCCCCCEEEEeCCC
Confidence 899999877 6999999999999998644
No 51
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=52.88 E-value=6.9 Score=35.27 Aligned_cols=27 Identities=22% Similarity=0.514 Sum_probs=19.8
Q ss_pred eEeeceEec--ccceEeecCCCeEEEEec
Q 001181 151 VFVNGIRLK--SGIVRELNAGDEVLFVCR 177 (1131)
Q Consensus 151 ~fvng~r~~--kg~~~el~~gd~v~~~~~ 177 (1131)
++|||..+. .|....|+.||||.|+-+
T Consensus 61 v~VN~~~v~~~~~~~~~L~~gDeV~i~Pp 89 (93)
T 3dwg_C 61 IYVNDEDVRFSGGLATAIADGDSVTILPA 89 (93)
T ss_dssp EEETTEEGGGTTGGGCBCCTTCEEEEEEC
T ss_pred EEECCEEccCcCCCCcCCCCCCEEEEECC
Confidence 455555555 467888999999999854
No 52
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=52.14 E-value=8.2 Score=32.80 Aligned_cols=27 Identities=30% Similarity=0.215 Sum_probs=19.7
Q ss_pred eEeeceEeccc--ceEeecCCCeEEEEec
Q 001181 151 VFVNGIRLKSG--IVRELNAGDEVLFVCR 177 (1131)
Q Consensus 151 ~fvng~r~~kg--~~~el~~gd~v~~~~~ 177 (1131)
+.|||.-+.+. ....|+.||+|.|+-.
T Consensus 32 vavN~~~v~~~~~~~~~L~dgD~v~i~~~ 60 (64)
T 2cu3_A 32 VLLNEEAFLGLEVPDRPLRDGDVVEVVAL 60 (64)
T ss_dssp EEETTEEEEGGGCCCCCCCTTCEEEEEEC
T ss_pred EEECCEECCccccCCcCCCCCCEEEEEee
Confidence 45555556665 5577999999999864
No 53
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=50.51 E-value=6.2 Score=35.01 Aligned_cols=27 Identities=26% Similarity=0.469 Sum_probs=21.2
Q ss_pred eEeeceEecc--cceEeecCCCeEEEEec
Q 001181 151 VFVNGIRLKS--GIVRELNAGDEVLFVCR 177 (1131)
Q Consensus 151 ~fvng~r~~k--g~~~el~~gd~v~~~~~ 177 (1131)
++|||..+.+ +....|+.||+|.|+-+
T Consensus 58 v~vN~~~v~~~~~~~~~l~~gD~V~i~pp 86 (90)
T 2g1e_A 58 ILVNGNNITSMKGLDTEIKDDDKIDLFPP 86 (90)
T ss_dssp EEESSSBGGGTCSSSCBCCTTCEEEEECC
T ss_pred EEECCEEccccCCCCcCCCCCCEEEEeCC
Confidence 6666666664 77888999999999854
No 54
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=49.13 E-value=11 Score=32.65 Aligned_cols=25 Identities=20% Similarity=0.179 Sum_probs=17.6
Q ss_pred eEeeceEecccceEeecCCCeEEEEec
Q 001181 151 VFVNGIRLKSGIVRELNAGDEVLFVCR 177 (1131)
Q Consensus 151 ~fvng~r~~kg~~~el~~gd~v~~~~~ 177 (1131)
+.|||..+.+. ..|+.||+|.|+-+
T Consensus 49 v~vNg~~v~~~--~~L~~gD~V~i~pp 73 (77)
T 2q5w_D 49 VAVNEEFVQKS--DFIQPNDTVALIPP 73 (77)
T ss_dssp EEETTEEECTT--SEECTTCEEEEECS
T ss_pred EEECCEECCCC--CCcCCCCEEEEECC
Confidence 44455555553 68999999999864
No 55
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=45.67 E-value=5.7 Score=36.67 Aligned_cols=31 Identities=19% Similarity=0.351 Sum_probs=24.6
Q ss_pred eccceEeeceEecc--cceEeecCCCeEEEEec
Q 001181 147 SLNGVFVNGIRLKS--GIVRELNAGDEVLFVCR 177 (1131)
Q Consensus 147 s~ng~fvng~r~~k--g~~~el~~gd~v~~~~~ 177 (1131)
+.+=++|||..+++ +....|+.||+|.|+-+
T Consensus 63 ~~~~v~VNg~~v~~~~~~~~~L~~gD~V~i~pp 95 (99)
T 2l52_A 63 GSINILINGNNIRHLEGLETLLKDSDEIGILPP 95 (99)
T ss_dssp SSCEEEETTSCGGGTTSTTSCCCTTEEEEEECC
T ss_pred cccEEEECCEEccccCCCCCCCCCCCEEEEECC
Confidence 34457888887776 77889999999999854
No 56
>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A*
Probab=45.54 E-value=10 Score=43.79 Aligned_cols=30 Identities=17% Similarity=0.277 Sum_probs=24.9
Q ss_pred cccccceEEeeeCCceEEEEeCCCCChhhhccc
Q 001181 525 ACHHPKLFVLQREDSIRVIVTSANLGAKQWNAV 557 (1131)
Q Consensus 525 GcHHSKMMLL~Y~D~LRVVI~TANLi~~DW~~~ 557 (1131)
+.||.|++|. |+-.++|.++|+...+|-..
T Consensus 164 ~r~H~K~~Vi---D~~~a~~Gg~Nl~~d~y~~~ 193 (506)
T 1v0w_A 164 SWNHSKILVV---DGQSALTGGINSWKDDYLDT 193 (506)
T ss_dssp BCBCCCEEEE---TTTEEEEESCCCCHHHHTSS
T ss_pred ccceeeEEEE---CCcEEEeeccccCccccccC
Confidence 4899999999 77788999999987666543
No 57
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=44.59 E-value=10 Score=33.06 Aligned_cols=29 Identities=17% Similarity=0.343 Sum_probs=21.9
Q ss_pred eeeeeccceEeeceEecccceEeecCCCeEEEEec
Q 001181 143 RVMVSLNGVFVNGIRLKSGIVRELNAGDEVLFVCR 177 (1131)
Q Consensus 143 ~~~~s~ng~fvng~r~~kg~~~el~~gd~v~~~~~ 177 (1131)
.+++..||.+|. +....|+.||||.|+-+
T Consensus 42 ~~~vavN~~~v~------~~~~~l~~gDeV~i~Pp 70 (74)
T 3rpf_C 42 VCAIALNDHLID------NLNTPLKDGDVISLLPP 70 (74)
T ss_dssp TCEEEESSSEEC------CTTCCCCTTCEEEEECC
T ss_pred ccEEEECCEEcC------CCCcCCCCCCEEEEECC
Confidence 456777777753 56778999999999754
No 58
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=42.19 E-value=11 Score=33.51 Aligned_cols=27 Identities=26% Similarity=0.191 Sum_probs=18.5
Q ss_pred eeeeccceEeeceEecccceEeecCCCeEEEEec
Q 001181 144 VMVSLNGVFVNGIRLKSGIVRELNAGDEVLFVCR 177 (1131)
Q Consensus 144 ~~~s~ng~fvng~r~~kg~~~el~~gd~v~~~~~ 177 (1131)
+++..||.++ .. ...|+.||||.|+-+
T Consensus 59 ~~v~VN~~~v-----~~--~~~l~~gDeV~i~Pp 85 (89)
T 3po0_A 59 INVLRNGEAA-----AL--GEATAAGDELALFPP 85 (89)
T ss_dssp SEEEETTEEC-----CT--TSBCCTTCEEEEECC
T ss_pred EEEEECCEEC-----CC--CcccCCCCEEEEECC
Confidence 4455555554 43 557999999999854
No 59
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=41.37 E-value=13 Score=34.15 Aligned_cols=27 Identities=22% Similarity=-0.031 Sum_probs=19.5
Q ss_pred eEeeceEecccc--eEeecCCCeEEEEec
Q 001181 151 VFVNGIRLKSGI--VRELNAGDEVLFVCR 177 (1131)
Q Consensus 151 ~fvng~r~~kg~--~~el~~gd~v~~~~~ 177 (1131)
|.|||.-|.+.. ...|+.||+|.|+-.
T Consensus 55 VavNg~iV~~~~~~~~~L~dGD~Vei~~~ 83 (87)
T 1tyg_B 55 VERNKEIIGKERYHEVELCDRDVIEIVHF 83 (87)
T ss_dssp EEETTEEECGGGTTTSBCCSSSEEEEEEE
T ss_pred EEECCEECChhhcCCcCCCCCCEEEEEcc
Confidence 455555567654 467999999999863
No 60
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=39.20 E-value=21 Score=36.37 Aligned_cols=37 Identities=19% Similarity=0.206 Sum_probs=28.1
Q ss_pred cccccceEEeeeCCceEEEEeCCCCChhhhc-ccccEEEEe
Q 001181 525 ACHHPKLFVLQREDSIRVIVTSANLGAKQWN-AVTNTVWWQ 564 (1131)
Q Consensus 525 GcHHSKMMLL~Y~D~LRVVI~TANLi~~DW~-~~TQ~VWiq 564 (1131)
+.+|.|+||. |+-.+++.|+|+...-+. +.++.+.+.
T Consensus 121 ~~~H~K~~vi---D~~~~~~GS~N~t~~~~~~n~E~~~~i~ 158 (196)
T 4ggj_A 121 GYMHHKFAIV---DKKVLITGSLNWTTQAIQNNRENVLIME 158 (196)
T ss_dssp SCCCCEEEEE---TTTEEEEESCCBCHHHHHHCCEEEEEEC
T ss_pred ccccCcEEEE---cceEEEecCccCChhhhcccceeEEEEE
Confidence 3689999999 666799999999876543 356666554
No 61
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=37.47 E-value=19 Score=31.13 Aligned_cols=25 Identities=24% Similarity=0.163 Sum_probs=17.9
Q ss_pred eEeeceEecccceEeecCCCeEEEEec
Q 001181 151 VFVNGIRLKSGIVRELNAGDEVLFVCR 177 (1131)
Q Consensus 151 ~fvng~r~~kg~~~el~~gd~v~~~~~ 177 (1131)
+.|||.-+.+.. .|+.||+|.|+-.
T Consensus 42 vavN~~~v~~~~--~L~~gD~V~ii~~ 66 (70)
T 1ryj_A 42 VKKNGQIVIDEE--EIFDGDIIEVIRV 66 (70)
T ss_dssp EEETTEECCTTS--BCCTTCEEEEEEC
T ss_pred EEECCEECCCcc--cCCCCCEEEEEec
Confidence 444555455655 8999999999864
No 62
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=37.35 E-value=9.1 Score=32.65 Aligned_cols=27 Identities=15% Similarity=0.197 Sum_probs=20.0
Q ss_pred eEeeceEecccc--eEeecCCCeEEEEec
Q 001181 151 VFVNGIRLKSGI--VRELNAGDEVLFVCR 177 (1131)
Q Consensus 151 ~fvng~r~~kg~--~~el~~gd~v~~~~~ 177 (1131)
+.|||.-+++.. ...|+.||+|.|+-.
T Consensus 34 vavN~~~v~~~~~~~~~L~~gD~v~i~~~ 62 (66)
T 1f0z_A 34 LAINQQIVPREQWAQHIVQDGDQILLFQV 62 (66)
T ss_dssp EEETTEEECHHHHTTCCCCTTEEECEEES
T ss_pred EEECCEECCchhcCCcCCCCCCEEEEEee
Confidence 566666677643 567999999999864
No 63
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=36.78 E-value=12 Score=34.21 Aligned_cols=25 Identities=32% Similarity=0.258 Sum_probs=17.2
Q ss_pred eEeeceEecccceEeecCCCeEEEEec
Q 001181 151 VFVNGIRLKSGIVRELNAGDEVLFVCR 177 (1131)
Q Consensus 151 ~fvng~r~~kg~~~el~~gd~v~~~~~ 177 (1131)
++|||..+.. ...|+.||||.|+-+
T Consensus 70 v~VNg~~v~~--~~~L~dGDeV~i~pp 94 (98)
T 1vjk_A 70 IAVNGRYVSW--DEELKDGDVVGVFPP 94 (98)
T ss_dssp EEETTBCCCT--TCBCCTTCEEEEESC
T ss_pred EEECCEECCC--CCCCCCCCEEEEECC
Confidence 4444444443 668999999999854
No 64
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=36.26 E-value=17 Score=31.59 Aligned_cols=25 Identities=32% Similarity=0.344 Sum_probs=17.2
Q ss_pred eEeeceEecccceEeecCCCeEEEEec
Q 001181 151 VFVNGIRLKSGIVRELNAGDEVLFVCR 177 (1131)
Q Consensus 151 ~fvng~r~~kg~~~el~~gd~v~~~~~ 177 (1131)
++|||..+. ....|+.||+|.|+-+
T Consensus 53 v~vN~~~v~--~~~~l~~gD~V~i~Pp 77 (81)
T 1fm0_D 53 AAVNQTLVS--FDHPLTDGDEVAFFPP 77 (81)
T ss_dssp EEETTEECC--TTCBCCTTCEEEEECC
T ss_pred EEECCEECC--CCCCCCCCCEEEEeCC
Confidence 444444443 4668999999999864
No 65
>4gel_A Mitochondrial cardiolipin hydrolase; piRNA, phospholipase D, nuclease; 1.76A {Drosophila melanogaster} PDB: 4gem_A 4gen_A
Probab=32.56 E-value=25 Score=35.69 Aligned_cols=15 Identities=33% Similarity=0.419 Sum_probs=12.5
Q ss_pred eeEEEEcccccchhh
Q 001181 973 LGWVYCGSHNFSAAA 987 (1131)
Q Consensus 973 igWvYVGSANLSkAA 987 (1131)
-.++++||+|++.+|
T Consensus 164 ~~~v~~GS~N~t~~s 178 (220)
T 4gel_A 164 YSIVISGSVNWTALG 178 (220)
T ss_dssp CCEEEEESCCBSHHH
T ss_pred cceEEecCccccccc
Confidence 468999999998765
No 66
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=31.27 E-value=11 Score=33.11 Aligned_cols=25 Identities=28% Similarity=0.244 Sum_probs=17.4
Q ss_pred eEeeceEecccceEeecCCCeEEEEec
Q 001181 151 VFVNGIRLKSGIVRELNAGDEVLFVCR 177 (1131)
Q Consensus 151 ~fvng~r~~kg~~~el~~gd~v~~~~~ 177 (1131)
+.|||.-+.+. ..|+.||+|.|+.+
T Consensus 49 VavNg~~v~~~--~~L~dGD~V~i~pp 73 (77)
T 1rws_A 49 AKVNGKVVLED--DEVKDGDFVEVIPV 73 (77)
T ss_dssp EEETTEEECSS--SCCCSSCCCBCSCC
T ss_pred EEECCEECCCC--CCcCCCCEEEEEcc
Confidence 44555545554 68999999998754
No 67
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=28.59 E-value=27 Score=35.50 Aligned_cols=28 Identities=21% Similarity=0.379 Sum_probs=22.0
Q ss_pred eEeeceEecc--cceEeecCCCeEEEEecC
Q 001181 151 VFVNGIRLKS--GIVRELNAGDEVLFVCRD 178 (1131)
Q Consensus 151 ~fvng~r~~k--g~~~el~~gd~v~~~~~~ 178 (1131)
++|||.-+.+ +....|+.||+|.|+-+-
T Consensus 55 VaVNg~~v~~~~~~dt~L~dGDeVai~PpV 84 (168)
T 1v8c_A 55 VFLEGRDVRYLQGLSTPLSPGATLDLFPPV 84 (168)
T ss_dssp EEETTEEGGGTTGGGCBCCTTCEEEEECSC
T ss_pred EEECCEECCCcCCCccCCCCCCEEEEECcc
Confidence 6677776765 567789999999999764
No 68
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=28.58 E-value=20 Score=31.60 Aligned_cols=27 Identities=26% Similarity=0.262 Sum_probs=21.4
Q ss_pred eEeeceEecccc--eEeecCCCeEEEEec
Q 001181 151 VFVNGIRLKSGI--VRELNAGDEVLFVCR 177 (1131)
Q Consensus 151 ~fvng~r~~kg~--~~el~~gd~v~~~~~ 177 (1131)
|.|||.-|+|.. ...|+.||+|.++..
T Consensus 33 V~vNg~iVpr~~~~~~~L~dGD~veIv~~ 61 (73)
T 2kl0_A 33 VALNYDVVPRGKWDETPVTAGDEIEILTP 61 (73)
T ss_dssp EEESSSEECHHHHTTCBCCTTCEEEEECC
T ss_pred EEECCEECChHHcCcccCCCCCEEEEEcc
Confidence 666777788876 478999999999873
No 69
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=27.87 E-value=16 Score=34.34 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=22.1
Q ss_pred ccceEeeceEecccceEeecCCCeEEEEe
Q 001181 148 LNGVFVNGIRLKSGIVRELNAGDEVLFVC 176 (1131)
Q Consensus 148 ~ng~fvng~r~~kg~~~el~~gd~v~~~~ 176 (1131)
.+-+.|||..++ ....|+.||||.++.
T Consensus 58 ~~~V~Vng~~v~--~d~~L~dGDRVEIyr 84 (97)
T 2hj1_A 58 TNKIGIFSRPIK--LTDVLKEGDRIEIYR 84 (97)
T ss_dssp TSEEEEEECSCC--TTCBCCTTCEEEECC
T ss_pred ccEEEEcCEECC--CCccCCCCCEEEEEe
Confidence 456888998887 556699999999987
No 70
>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A*
Probab=26.73 E-value=41 Score=38.84 Aligned_cols=35 Identities=23% Similarity=0.136 Sum_probs=28.5
Q ss_pred cccccceEEeeeCCceEEEEeCCCCChhhhcccccEEEEe
Q 001181 525 ACHHPKLFVLQREDSIRVIVTSANLGAKQWNAVTNTVWWQ 564 (1131)
Q Consensus 525 GcHHSKMMLL~Y~D~LRVVI~TANLi~~DW~~~TQ~VWiq 564 (1131)
+..|+|+||. |.-.++|.|+||...-+. +.++.+.
T Consensus 437 ~~lHaK~~vv---D~~~~~vGS~N~d~rS~~--E~~l~i~ 471 (506)
T 1v0w_A 437 YAQHHKLVSV---DSSTFYIGSKNLYPSWLQ--DFGYIVE 471 (506)
T ss_dssp CCBCCEEEEE---TTTEEEEESCCSSCCCSB--CEEEEEE
T ss_pred ccceEEEEEE---CCcEEEEeCCCCCCcchh--hceeEec
Confidence 4699999998 666899999999877774 6667666
No 71
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=25.02 E-value=28 Score=31.16 Aligned_cols=27 Identities=30% Similarity=0.365 Sum_probs=20.9
Q ss_pred eEeeceEecccce--EeecCCCeEEEEec
Q 001181 151 VFVNGIRLKSGIV--RELNAGDEVLFVCR 177 (1131)
Q Consensus 151 ~fvng~r~~kg~~--~el~~gd~v~~~~~ 177 (1131)
|.|||.-|+|..- ..|+.||+|.++..
T Consensus 37 VavNg~iVpr~~~~~~~L~dGD~IEIv~~ 65 (78)
T 2k5p_A 37 VELNGEVLEREAFDATTVKDGDAVEFLYF 65 (78)
T ss_dssp EEETTEECCTTHHHHCEECSSBCEEECCC
T ss_pred EEECCEECChHHcCcccCCCCCEEEEEee
Confidence 5566666788755 67999999999873
No 72
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=23.69 E-value=40 Score=30.22 Aligned_cols=30 Identities=27% Similarity=0.427 Sum_probs=22.1
Q ss_pred eeccceEeeceEecccceEeecCCCeEEEEec
Q 001181 146 VSLNGVFVNGIRLKSGIVRELNAGDEVLFVCR 177 (1131)
Q Consensus 146 ~s~ng~fvng~r~~kg~~~el~~gd~v~~~~~ 177 (1131)
+....|.|||..++.+. .|.+||+|.+...
T Consensus 23 i~~G~V~VNg~~~~~~~--~v~~gd~I~v~~~ 52 (92)
T 2k6p_A 23 CNVGAVWLNGSCAKASK--EVKAGDTISLHYL 52 (92)
T ss_dssp HHHTCCEETTEECCTTC--BCCTTCEEEECCS
T ss_pred HHCCcEEECCEEcCCCC--CcCCCCEEEEEeC
Confidence 45567899999885544 4789999988543
No 73
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=22.82 E-value=54 Score=29.45 Aligned_cols=27 Identities=15% Similarity=0.252 Sum_probs=21.8
Q ss_pred ceEeeceEecccceEeecCCCeEEEEecC
Q 001181 150 GVFVNGIRLKSGIVRELNAGDEVLFVCRD 178 (1131)
Q Consensus 150 g~fvng~r~~kg~~~el~~gd~v~~~~~~ 178 (1131)
|..|||..+.-. .+|+.||+|.++..+
T Consensus 43 ~AkVNG~~v~L~--~~L~~gd~VeIit~~ 69 (78)
T 3hvz_A 43 GAKVDGRIVPID--YKVKTGEIIDVLTTK 69 (78)
T ss_dssp EEEETTEEECTT--CBCCTTCBEEEEECC
T ss_pred EEEECCEEcCCC--cccCCCCEEEEEccC
Confidence 457788887765 679999999999865
No 74
>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae}
Probab=22.24 E-value=61 Score=37.55 Aligned_cols=37 Identities=22% Similarity=0.322 Sum_probs=30.7
Q ss_pred cccccceEEeeeCCceEEEEeCCCCChhhhc-ccccEEEEe
Q 001181 525 ACHHPKLFVLQREDSIRVIVTSANLGAKQWN-AVTNTVWWQ 564 (1131)
Q Consensus 525 GcHHSKMMLL~Y~D~LRVVI~TANLi~~DW~-~~TQ~VWiq 564 (1131)
+.+|+|.|+. |.-.++|.|+||.+.-+. +.+.++.+.
T Consensus 361 ~~lHaK~~vv---D~~~~~vGS~N~d~RS~~lN~E~~~~i~ 398 (458)
T 3hsi_A 361 NTYHLKGVWV---DDRYILLTGNNLNPRAWRLDAENGLLIY 398 (458)
T ss_dssp BEECCCEEEE---TTTEEEEECCCCSHHHHHTCEEEEEEEE
T ss_pred CceeEEEEEE---CCeEEEecCCCCCcchhhhCceeEEEEe
Confidence 5899999999 556799999999987664 478888887
No 75
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=21.24 E-value=28 Score=37.63 Aligned_cols=10 Identities=20% Similarity=0.272 Sum_probs=4.3
Q ss_pred HhHHHHHHHH
Q 001181 1068 AMREALTELY 1077 (1131)
Q Consensus 1068 a~~e~~~e~~ 1077 (1131)
...+++.++.
T Consensus 324 ~l~~~l~~~~ 333 (386)
T 2ca6_A 324 EIREVFSTRG 333 (386)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHhhhcC
Confidence 3344444443
Done!