BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001182
(1131 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q61550|RAD21_MOUSE Double-strand-break repair protein rad21 homolog OS=Mus musculus
GN=Rad21 PE=1 SV=3
Length = 635
Score = 152 bits (384), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 94/234 (40%), Positives = 136/234 (58%), Gaps = 24/234 (10%)
Query: 1 MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLL 60
MFY+ F+L+K+GPL IW+AAH ++KL K V + ++ SV+SI+ P V +ALR S HLL
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60
Query: 61 LGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFE 120
LGVVRIY RK YL DC+EA +KIK AFR VDLP E A Y++ITLPE F D
Sbjct: 61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP 120
Query: 121 LPD-NDIFQGNYVDHHVSTREQITLQDTMDGMAY----STSQFGLDER--FGDGDASQMG 173
LPD +DI + S E+IT+++ + ++ FG+D+R +G A +
Sbjct: 121 LPDLDDIDVAQQFSLNQSRVEEITMREEVGNISILQENDFGDFGMDDREIMREGSAFE-- 178
Query: 174 LDLDEDLLLDKGTAAGHGVSDADPQGSVKPTTHWEQDNISERMNEISEERTVND 227
D+D+L+ T+A + + +P+ S N++E+MN + E D
Sbjct: 179 ---DDDMLV--STSASNLL--LEPEQSTS--------NLNEKMNHLEYEDQYKD 217
Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 1047 ENSGWSSRTRAVSKYLQTLFVREPVQGRKVLALDHLLVGKTRKEASRMFFETLVLKTKDY 1106
E W+ RT+ + LQ + G + ++L L RK+A+ F+ LVLK +
Sbjct: 556 EERRWNKRTQQMLHGLQRALAK---TGAESISLLELCRNTNRKQAAAKFYSFLVLKKQQA 612
Query: 1107 IHVEQARPLDNINIKPGAKL 1126
I + Q P +I PG +
Sbjct: 613 IELTQEEPYSDIIATPGPRF 632
>sp|Q9FQ19|SCC13_ARATH Sister chromatid cohesion 1 protein 3 OS=Arabidopsis thaliana
GN=SYN3 PE=2 SV=2
Length = 693
Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 72/148 (48%), Positives = 106/148 (71%), Gaps = 2/148 (1%)
Query: 1 MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLL 60
MFYS +LA+KGPLGT+W AAH+ ++L+K+Q +I +VD+I+FP+VP+ALR SSHLL
Sbjct: 1 MFYSHTLLARKGPLGTVWCAAHVHQRLKKSQYTSINIPDTVDNIMFPEVPLALRTSSHLL 60
Query: 61 LGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFE 120
+GVVRIYS+KV+YL++D + + +AF ST V+LP + AP S+TLP+ +LD+F+
Sbjct: 61 VGVVRIYSKKVDYLYNDWNLLNTWVAKAFVSTQVNLPEDARQAPPESVTLPQALNLDEFD 120
Query: 121 LPDNDIFQGNYVDHHVSTREQITLQDTM 148
L D+ + D+H + E ITL D +
Sbjct: 121 LEDDTL--DMEFDNHTRSEEDITLTDQI 146
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 52/88 (59%), Gaps = 7/88 (7%)
Query: 1047 ENSGWSSRTRAVSKYLQTLFVREPVQGRKV---LALDHLLVGKTRKEASRMFFETLVLKT 1103
+++ + R RA+++YL+ P L+L +L GKTRK A+RMFFETLVLK+
Sbjct: 605 DSAALTGRARALAQYLKQRSSSSPTTSSHPSGDLSLSEILAGKTRKLAARMFFETLVLKS 664
Query: 1104 KDYIHVEQARPLDNINIKPGAKLMKADF 1131
+ I ++Q RP +I + KLM A F
Sbjct: 665 RGLIDMQQDRPYGDIAL----KLMPALF 688
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 601 ALKRKVLMDDTMVLHGDVIRQQLTNTEDIRRIRKKAPCTGPEILMIQMQFLEDDIFNEPI 660
A KRK D VL I ++L + D R RKK P + + + Q +D FNEP+
Sbjct: 354 ARKRKNF-DGVTVLTNKNISERLKDPSDTLRKRKKMPSSKLKFWRMNNQSRKDQNFNEPL 412
Query: 661 FTGMSAELTSVHCEIHDLSKISISETDK 688
FTG S +L +V + + SK ++ +D+
Sbjct: 413 FTGFSDDLRNVFEKDYVASKPHLAVSDE 440
>sp|Q3SWX9|RAD21_BOVIN Double-strand-break repair protein rad21 homolog OS=Bos taurus
GN=RAD21 PE=2 SV=1
Length = 630
Score = 151 bits (382), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 85/194 (43%), Positives = 118/194 (60%), Gaps = 12/194 (6%)
Query: 1 MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLL 60
MFY+ F+L+K+GPL IW+AAH ++KL K V + ++ SV+SI+ P V +ALR S HLL
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60
Query: 61 LGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFE 120
LGVVRIY RK YL DC+EA +KIK AFR VDLP E A Y++ITLPE F D
Sbjct: 61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP 120
Query: 121 LPD-NDIFQGNYVDHHVSTREQITLQDTMDGMAY----STSQFGLDER--FGDGDASQMG 173
LPD +DI + S E+IT+++ + ++ FG+D+R +G A +
Sbjct: 121 LPDLDDIDVAQQFSLNQSRVEEITMREEVGNISILQENDFGDFGMDDREIMREGSAFE-- 178
Query: 174 LDLDEDLLLDKGTA 187
D+D+L G +
Sbjct: 179 ---DDDMLASTGAS 189
Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 1047 ENSGWSSRTRAVSKYLQTLFVREPVQGRKVLALDHLLVGKTRKEASRMFFETLVLKTKDY 1106
E W+ RT+ + LQ + G + ++L L RK+A+ F+ LVLK +
Sbjct: 551 EERRWNKRTQQMLHGLQRALAK---TGAESISLLELCRNTNRKQAAAKFYSFLVLKKQQA 607
Query: 1107 IHVEQARPLDNINIKPGAKL 1126
I + Q P +I PG +
Sbjct: 608 IELTQEEPYSDIIATPGPRF 627
>sp|O60216|RAD21_HUMAN Double-strand-break repair protein rad21 homolog OS=Homo sapiens
GN=RAD21 PE=1 SV=2
Length = 631
Score = 151 bits (382), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 85/194 (43%), Positives = 119/194 (61%), Gaps = 12/194 (6%)
Query: 1 MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLL 60
MFY+ F+L+K+GPL IW+AAH ++KL K V + ++ SV+SI+ P V +ALR S HLL
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60
Query: 61 LGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFE 120
LGVVRIY RK YL DC+EA +KIK AFR VDLP E A Y++ITLPE F D
Sbjct: 61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP 120
Query: 121 LPD-NDIFQGNYVDHHVSTREQITLQDTMDGMAY----STSQFGLDER--FGDGDASQMG 173
LPD +DI + S E+IT+++ + ++ FG+D+R +G A +
Sbjct: 121 LPDLDDIDVAQQFSLNQSRVEEITMREEVGNISILQENDFGDFGMDDREIMREGSAFE-- 178
Query: 174 LDLDEDLLLDKGTA 187
D+D+L+ T+
Sbjct: 179 ---DDDMLVSTTTS 189
Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 1047 ENSGWSSRTRAVSKYLQTLFVREPVQGRKVLALDHLLVGKTRKEASRMFFETLVLKTKDY 1106
E W+ RT+ + LQ + G + ++L L RK+A+ F+ LVLK +
Sbjct: 552 EERRWNKRTQQMLHGLQRALAK---TGAESISLLELCRNTNRKQAAAKFYSFLVLKKQQA 608
Query: 1107 IHVEQARPLDNINIKPGAKL 1126
I + Q P +I PG +
Sbjct: 609 IELTQEEPYSDIIATPGPRF 628
>sp|O93310|RAD21_XENLA Double-strand-break repair protein rad21 homolog OS=Xenopus laevis
GN=rad21 PE=1 SV=1
Length = 629
Score = 150 bits (379), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 79/168 (47%), Positives = 106/168 (63%), Gaps = 5/168 (2%)
Query: 1 MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLL 60
MFY+ F+L+K+GPL IW+AAH ++KL K V + ++ SV+SI+ P V +ALR S HLL
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIICPKVKMALRTSGHLL 60
Query: 61 LGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFE 120
LGVVRIY RK YL DC+EA +KIK AFR VDLP E A Y++ITLPE F D
Sbjct: 61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP 120
Query: 121 LPD-NDIFQGNYVDHHVSTREQITLQDTMDGMAY----STSQFGLDER 163
LPD +DI + S E+IT+++ + + FG+D+R
Sbjct: 121 LPDLDDIDVAQQFSLNQSRVEEITMREEVSNINILQDNDFGDFGMDDR 168
Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 1047 ENSGWSSRTRAVSKYLQTLFVREPVQGRKVLALDHLLVGKTRKEASRMFFETLVLKTKDY 1106
E W+ RT+ + LQ + + G + ++L L RK+A+ F+ LVLK +
Sbjct: 550 EERRWNKRTQQMLHGLQRVLAK---TGAESISLLDLCRNTNRKQAAAKFYSFLVLKKQQA 606
Query: 1107 IHVEQARPLDNINIKPGAKL 1126
I + Q P +I PG +
Sbjct: 607 IELTQREPYSDIVATPGPRF 626
>sp|A2AU37|RD21L_MOUSE Double-strand-break repair protein rad21-like protein 1 OS=Mus
musculus GN=Rad21l1 PE=1 SV=2
Length = 552
Score = 145 bits (365), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/161 (45%), Positives = 103/161 (63%), Gaps = 4/161 (2%)
Query: 1 MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLL 60
MFY+ +++K+GPL IW+AAH E+KL K V + ++ +++ I+ P V IALR S HLL
Sbjct: 1 MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIQKIISPKVKIALRTSGHLL 60
Query: 61 LGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFE 120
LGVVRIY+RK YL DCSEA LK+K FR VDLP E A Y++ITLPE F DFE
Sbjct: 61 LGVVRIYNRKAKYLLADCSEAFLKMKMTFRPGLVDLPKENFEAAYNTITLPEEF--HDFE 118
Query: 121 LPD-NDIFQGNYVDHHVSTREQITLQDTM-DGMAYSTSQFG 159
+ + N+I + + S E+ITL++ + + + FG
Sbjct: 119 IYNINEIDISEPLAQNQSRPEEITLREEYSNDLLFQAGSFG 159
>sp|Q9H4I0|RD21L_HUMAN Double-strand-break repair protein rad21-like protein 1 OS=Homo
sapiens GN=RAD21L1 PE=2 SV=3
Length = 556
Score = 145 bits (365), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/161 (45%), Positives = 101/161 (62%), Gaps = 4/161 (2%)
Query: 1 MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLL 60
MFY+ +++K+GPL IW+AAH E+KL K V + ++ ++++ IL P V IALR S HLL
Sbjct: 1 MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIEKILSPKVKIALRTSGHLL 60
Query: 61 LGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFE 120
LGVVRIY+RK YL DCSEA LK+K F VDLP E A Y++ITLPE F DF+
Sbjct: 61 LGVVRIYNRKAKYLLADCSEAFLKMKMTFCPGLVDLPKENFEASYNAITLPEEF--HDFD 118
Query: 121 LPD-NDIFQGNYVDHHVSTREQITLQDTMDG-MAYSTSQFG 159
+ N I + + S E+ITL++ D + + FG
Sbjct: 119 TQNMNAIDVSEHFTQNQSRPEEITLRENFDNDLIFQAESFG 159
>sp|D2HSB3|RD21L_AILME Double-strand-break repair protein rad21-like protein 1
OS=Ailuropoda melanoleuca GN=RAD21L1 PE=3 SV=1
Length = 554
Score = 143 bits (360), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 74/161 (45%), Positives = 102/161 (63%), Gaps = 4/161 (2%)
Query: 1 MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLL 60
MFY+ +++K+GPL IW+AAH E+KL K V + ++ ++++ IL V IALR S HLL
Sbjct: 1 MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIEKILSSKVKIALRTSGHLL 60
Query: 61 LGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFE 120
LGVVRIY+RK YL DC+EALLK+K FR VDLP E A Y++ITLPE F DF+
Sbjct: 61 LGVVRIYNRKAKYLLADCNEALLKMKMTFRPGLVDLPKENFEAAYNAITLPEEF--HDFD 118
Query: 121 LPD-NDIFQGNYVDHHVSTREQITL-QDTMDGMAYSTSQFG 159
+ N I + + S E+ITL +D + + + FG
Sbjct: 119 TQNVNAIDVSEHFTQNQSKPEEITLREDYSNDLLFQAGSFG 159
>sp|Q9FQ20|SCC12_ARATH Sister chromatid cohesion 1 protein 2 OS=Arabidopsis thaliana
GN=SYN2 PE=2 SV=2
Length = 810
Score = 127 bits (320), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 107/175 (61%), Gaps = 22/175 (12%)
Query: 1 MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDV-PIALRLSSHL 59
MFYS ++++KGPLG IW+AA+ +KL+K+QV T I SVD IL ++ + R+ ++L
Sbjct: 1 MFYSHCLVSRKGPLGAIWVAAYFFKKLKKSQVKATHIPSSVDQILQKELDALTYRVLAYL 60
Query: 60 LLGVVRIYSRKVNYLFDDCSEALLKIKQAF------RSTAVDLPPEESTAPYHSITLPET 113
LLGVVRIYS+KV++LFDDC++AL+ +K+ T V LP ++ SI LPE
Sbjct: 61 LLGVVRIYSKKVDFLFDDCNKALIGVKEFVAKERNREKTGVSLP---ASIECFSIALPER 117
Query: 114 FDLDDFELPDNDIFQGNYVDHHVSTREQITLQD------TMDGMAYSTSQFGLDE 162
F+LD F+L + F G V H E ITL+D MD YS +F ++E
Sbjct: 118 FELDAFDLGVLEDFHGGNVKPH----EDITLKDGSQETERMD--MYSMERFDMEE 166
Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Query: 1046 LENSGWSSRTRAVSKYLQTLFVREPVQGRKV-LALDHLLVGKTRKEASRMFFETLVLKTK 1104
L+ WSSRTR V+K+L+ F+ + + + ++L L G+T+KE++R+F+ETLVLKTK
Sbjct: 725 LQQETWSSRTRNVAKFLEKTFLEQREREEEEKVSLLQLCRGRTQKESARLFYETLVLKTK 784
Query: 1105 DYIHVEQARPLDNINIKPGAKLMKA 1129
Y+ V+Q P ++ + ++ KA
Sbjct: 785 GYVEVKQNHPYSDVFLMRVSRPQKA 809
>sp|P30776|RAD21_SCHPO Cohesin subunit rad21 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rad21 PE=1 SV=1
Length = 628
Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 64/144 (44%), Positives = 90/144 (62%), Gaps = 12/144 (8%)
Query: 1 MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPD-VPIALRLSSHL 59
MFYS+ IL+KKGPL +W+AAH E+KL K Q T I SV +I+ + P+ALRLS L
Sbjct: 1 MFYSEAILSKKGPLAKVWLAAHWEKKLSKVQTLHTSIEQSVHAIVTEETAPMALRLSGQL 60
Query: 60 LLGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVD----------LPPEESTAPYHSIT 109
+LGVVRIYSRK YL +DC+EAL+++K +F+ VD L +++ ++T
Sbjct: 61 MLGVVRIYSRKARYLLEDCTEALMRLKMSFQPGQVDMIEPATALQSLKGKDAVTQSANLT 120
Query: 110 LPETFDLDDFELPDNDI-FQGNYV 132
LPET D +PD+ FQ + +
Sbjct: 121 LPETITEFDLLVPDSTFDFQWSQL 144
Score = 37.0 bits (84), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 1072 QGRKVLALDHLLVGKTRKEASRMFFETLVLKTKDYIHVEQ 1111
+G KV + L G R+EA ++FF+ LVL TKD I V+Q
Sbjct: 569 EGEKV-SFQTLSAGCNREEAVQLFFDVLVLATKDVISVKQ 607
>sp|Q9S7T7|SCC11_ARATH Sister chromatid cohesion 1 protein 1 OS=Arabidopsis thaliana
GN=SYN1 PE=2 SV=2
Length = 627
Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/133 (42%), Positives = 79/133 (59%), Gaps = 6/133 (4%)
Query: 7 ILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLLLGVVRI 66
+LA+K PLG IW+AA L K+ + ++ DI + IL P VP+ALRLS L+ GVV +
Sbjct: 17 LLARKAPLGQIWMAATLHAKINRKKLDKLDIIQICEEILNPSVPMALRLSGILMGGVVIV 76
Query: 67 YSRKVNYLFDDCSEALLKIKQAFRSTAVD----LPPEESTAPYHSITLPET--FDLDDFE 120
Y RKV LFDD + L++I A+R+ +V LP ++ A ++TLPE D DFE
Sbjct: 77 YERKVKLLFDDVNRFLVEINGAWRTKSVPDPTLLPKGKTHARKEAVTLPENEEADFGDFE 136
Query: 121 LPDNDIFQGNYVD 133
N GNY+D
Sbjct: 137 QTRNVPKFGNYMD 149
Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 1055 TRAVSKYLQTLFVREPVQGRKVLALDHLLVGKTRKEASRMFFETLVLKTKDYIHVEQARP 1114
T ++ +L+T F E +V +L+ L VG R A+++FF++ VL T+ I V QA P
Sbjct: 558 TDSIKSHLKTHF--ETPGAPQVESLNKLAVGMDRNAAAKLFFQSCVLATRGVIKVNQAEP 615
Query: 1115 LDNINIKPGAKL 1126
+I I G +
Sbjct: 616 YGDILIARGPNM 627
>sp|P36626|REC8_SCHPO Meiotic recombination protein rec8 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rec8 PE=1 SV=2
Length = 561
Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 56/93 (60%), Gaps = 6/93 (6%)
Query: 1 MFYSQFILAK-KGPLGTIWIAA-----HLERKLRKNQVADTDIGVSVDSILFPDVPIALR 54
MFY+Q +L K KG +G IW+AA H RKL K + DI + D + F P+ALR
Sbjct: 1 MFYNQDVLTKEKGGMGVIWLAATLGSKHSLRKLHKKDIMSVDIDEACDFVAFSPEPLALR 60
Query: 55 LSSHLLLGVVRIYSRKVNYLFDDCSEALLKIKQ 87
LSS+L++GV R+++ + ++ S L++++
Sbjct: 61 LSSNLMIGVTRVWAHQYSFFHSQVSTLHLRVRK 93
>sp|Q12158|SCC1_YEAST Sister chromatid cohesion protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=MCD1 PE=1 SV=1
Length = 566
Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 87/226 (38%), Gaps = 47/226 (20%)
Query: 11 KGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFP---------DVPIALRLSSHLLL 61
KGPL IW+A+++ + + V T I S I + I LR S LL
Sbjct: 18 KGPLAQIWLASNMS-NIPRGSVIQTHIAESAKEIAKASGCDDESGDNEYITLRTSGELLQ 76
Query: 62 GVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAV---------------DLPPEESTAPYH 106
G+VR+YS++ +L D + L KI F+++ L E++
Sbjct: 77 GIVRVYSKQATFLLTDIKDTLTKISMLFKTSQKMTSTVNRLNTVTRVHQLMLEDAVTERE 136
Query: 107 SITLPETFDLDDFELPDNDIFQGNYVDHHVSTREQITLQDTMDGMA-YSTS-----QFGL 160
+ P LDD +P + Q N ++ V G A + TS +F
Sbjct: 137 VLVTPGLEFLDDTTIPVGLMAQENSMERKVQ------------GAAPWDTSLEVGRRFSP 184
Query: 161 DERFGDGDASQMGLDLDEDLLLDKGTAAGHGVSDADPQGSVKPTTH 206
DE F + S M LD D +++G + Q S TH
Sbjct: 185 DEDFEHNNLSSMNLDFD----IEEGPITSKSWEEGTRQSSRNFDTH 226
>sp|O95072|REC8_HUMAN Meiotic recombination protein REC8 homolog OS=Homo sapiens GN=REC8
PE=2 SV=1
Length = 547
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 14/110 (12%)
Query: 1 MFYSQFILAKK-GPLGTIWIAAHLERKLRKNQVADTDIGVSVDSIL-------------F 46
MFY +L + G TIW+AA +L K + ++ + + IL
Sbjct: 1 MFYYPNVLQRHTGCFATIWLAATRGSRLVKREYLRVNVVKTCEEILNYVLVRVQPPQPGL 60
Query: 47 PDVPIALRLSSHLLLGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDL 96
P +L LS+ L +GV+R+YS++ YL +D L ++ +A +D+
Sbjct: 61 PRPRFSLYLSAQLQIGVIRVYSQQCQYLVEDIQHILERLHRAQLQIRIDM 110
Score = 38.1 bits (87), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 25/39 (64%)
Query: 1088 RKEASRMFFETLVLKTKDYIHVEQARPLDNINIKPGAKL 1126
R+ A+R+F+ LVL + +HV+Q +P + I+PG +
Sbjct: 508 RRMAARVFYLLLVLSAQQILHVKQEKPYGRLLIQPGPRF 546
>sp|Q6AYJ4|REC8_RAT Meiotic recombination protein REC8 homolog OS=Rattus norvegicus
GN=Rec8 PE=1 SV=1
Length = 593
Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 18/125 (14%)
Query: 1 MFYSQFILAK-KGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSIL----------FPDV 49
MFY +L + G TIW+AA +L K + ++ + + IL P +
Sbjct: 1 MFYYPNVLQRHTGCFATIWLAATRGSRLVKREYLKVNVVKTCEEILNYVLVRVQPPMPGL 60
Query: 50 P---IALRLSSHLLLGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLPPEESTAPYH 106
P +L LS+ L +GV+R+Y ++ YL +D L + +A +D+ EE+ P
Sbjct: 61 PRPRFSLYLSAQLQIGVIRVYFQQCQYLVEDIQHILEHLHRAQLRIRIDM--EEADLP-- 116
Query: 107 SITLP 111
S+ LP
Sbjct: 117 SLLLP 121
>sp|Q8C5S7|REC8_MOUSE Meiotic recombination protein REC8 homolog OS=Mus musculus GN=Rec8
PE=1 SV=1
Length = 591
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 18/125 (14%)
Query: 1 MFYSQFILAK-KGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSIL-------------F 46
MFY +L + G TIW+AA +L K + + ++ + + IL
Sbjct: 1 MFYYPNVLQRHTGCFATIWLAATRGSRLVKREYLNVNVVKTCEEILNYVLVRVQPPVAGL 60
Query: 47 PDVPIALRLSSHLLLGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLPPEESTAPYH 106
P +L LS+ L +GV+R+Y ++ YL +D L + +A +D+ EE+ P
Sbjct: 61 PRPRFSLYLSAQLQIGVIRVYFQQCQYLVEDIQHILEHLHRAQLRIRIDM--EEADLP-- 116
Query: 107 SITLP 111
S+ LP
Sbjct: 117 SLLLP 121
Score = 40.4 bits (93), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 25/39 (64%)
Query: 1088 RKEASRMFFETLVLKTKDYIHVEQARPLDNINIKPGAKL 1126
RK ASR+F+ LVL T+ + VEQ +P + I+PG K
Sbjct: 552 RKLASRVFYLLLVLSTQKILLVEQQKPYGPLLIRPGPKF 590
>sp|Q8WWV6|FCAMR_HUMAN High affinity immunoglobulin alpha and immunoglobulin mu Fc receptor
OS=Homo sapiens GN=FCAMR PE=1 SV=1
Length = 532
Score = 37.0 bits (84), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 52/126 (41%), Gaps = 7/126 (5%)
Query: 902 ADVETDRSVLTDAVNTQEGVSLETGGYNDLAAANGDNSRLEVRNEDGPLAGDWGSNGKDP 961
ADV + D + E S E DL AA GD ++ P G WG GK+
Sbjct: 378 ADVWILGTPAADVWTSMEAASGEGSAAGDLDAATGDRGPQATLSQT-PAVGPWGPPGKES 436
Query: 962 TSNHMFSEEPVIDSTNSVELGGDTINVSLDDGKSQVDLRSPMDDGR--MEIEEVTIGNDT 1019
+ F E D ++S L + ++L + V L+ + R E E VT+ T
Sbjct: 437 SVKRTFPE----DESSSRTLAPVSTMLALFMLMALVLLQRKLWRRRTSQEAERVTLIQMT 492
Query: 1020 EFLNVN 1025
FL VN
Sbjct: 493 HFLEVN 498
>sp|A4J8J1|THIC_DESRM Phosphomethylpyrimidine synthase OS=Desulfotomaculum reducens
(strain MI-1) GN=thiC PE=3 SV=1
Length = 432
Score = 34.7 bits (78), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 500 VESTPEKEVLAGSGGVDA------GNKLNSGKKRSYTESTITVESLNSSESFGVDRTKRN 553
+E EK + G DA G +++ G++R ESTI V ++ +SF +R KR
Sbjct: 76 IEKELEKLKVVLEAGADAVMDLSTGGEIDQGRRRIIEESTIAVGTVPIYQSFLENRNKRG 135
Query: 554 SEFIPDDDDLLSSI 567
S DDL +
Sbjct: 136 SMIAMTADDLFEVV 149
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.129 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 433,741,858
Number of Sequences: 539616
Number of extensions: 19594366
Number of successful extensions: 42561
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 124
Number of HSP's that attempted gapping in prelim test: 42036
Number of HSP's gapped (non-prelim): 428
length of query: 1131
length of database: 191,569,459
effective HSP length: 128
effective length of query: 1003
effective length of database: 122,498,611
effective search space: 122866106833
effective search space used: 122866106833
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 67 (30.4 bits)