Query 001182
Match_columns 1131
No_of_seqs 281 out of 434
Neff 3.0
Searched_HMMs 46136
Date Thu Mar 28 18:03:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001182.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001182hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1213 Sister chromatid cohes 100.0 1.9E-61 4.2E-66 555.3 25.4 481 1-643 1-483 (614)
2 PF04825 Rad21_Rec8_N: N termi 100.0 5.3E-35 1.2E-39 275.1 4.2 111 1-111 1-111 (111)
3 PF04824 Rad21_Rec8: Conserved 99.6 6.2E-17 1.3E-21 137.7 1.5 52 1075-1126 4-55 (55)
4 PF02616 ScpA_ScpB: ScpA/B pro 96.3 0.0048 1E-07 65.0 4.9 48 1075-1122 194-241 (242)
5 PRK00104 scpA segregation and 95.8 0.014 3.1E-07 62.6 6.0 50 1075-1124 190-239 (242)
6 COG1354 scpA Rec8/ScpA/Scc1-li 92.9 0.17 3.6E-06 54.8 5.6 50 1076-1125 191-241 (248)
7 PRK00478 scpA segregation and 86.7 0.72 1.6E-05 55.1 4.5 64 1053-1123 346-413 (505)
8 PF06278 DUF1032: Protein of u 56.2 4.4 9.5E-05 49.3 0.6 40 1075-1114 493-532 (565)
9 KOG0447 Dynamin-like GTP bindi 34.4 17 0.00036 44.9 0.8 23 612-635 907-929 (980)
10 KOG1213 Sister chromatid cohes 33.5 28 0.00061 43.2 2.5 78 1046-1128 533-611 (614)
11 PF06278 DUF1032: Protein of u 28.8 68 0.0015 39.6 4.6 31 57-87 7-37 (565)
No 1
>KOG1213 consensus Sister chromatid cohesion complex Cohesin, subunit RAD21/SCC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.9e-61 Score=555.31 Aligned_cols=481 Identities=32% Similarity=0.421 Sum_probs=294.9
Q ss_pred CCcchhhhhccCCchhhhhhhhccCcCcchhhcccchHHHHHHhcCCCCcchhhhhhccccceEEEEeccchhHHHhHHH
Q 001182 1 MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLLLGVVRIYSRKVNYLFDDCSE 80 (1131)
Q Consensus 1 MFYS~~LLsKKGpLa~IWLAATl~KKLsKkqIl~tDI~ksceeIl~Pe~PLALRLSGqLLlGVVRIYSRKvkYLL~Dcn~ 80 (1131)
|||||+||+||||||+|||||||+|||+|+||++|||+++|+.|++|.+|||||||||||+||||||||||+|||+|||+
T Consensus 1 MFYs~~vLakKGPLa~IWlAAh~~kKL~K~qv~~tdI~~sve~Il~p~~~lALRtSghLLlGVVRIYSrK~~YLl~Dcne 80 (614)
T KOG1213|consen 1 MFYSHFVLAKKGPLAKIWLAAHWEKKLSKAQVFETDIPQSVEEILQPKVPLALRTSGHLLLGVVRIYSRKVKYLLDDCNE 80 (614)
T ss_pred CcchhhhHhhcCchhhhhHHhHHhhhcchhheeeccHHHHHHHHhCcccceehhhhcccceeeEEeehhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccccCCCCCCCCCCCCccccCCCCCCCCCCCCCcccccCCccccCccCccCCccCcccCccccccccCCC
Q 001182 81 ALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFELPDNDIFQGNYVDHHVSTREQITLQDTMDGMAYSTSQFGL 160 (1131)
Q Consensus 81 aL~KIk~aFRs~~VDLP~e~~~A~~eaITLPE~fdLDDfeLPd~d~l~~d~~d~Hqs~~EdITL~D~~~~~v~gas~F~~ 160 (1131)
+|.|||++||+++||+|....+.++.+||||++|++|++++|+ .+ +.|.+.+. +....++++.
T Consensus 81 al~kIk~afr~~~vd~p~~~~~~~~~siTLPE~~~d~d~~l~~-~~-------------~~~~~~~~---~~~~~~~~~l 143 (614)
T KOG1213|consen 81 ALLKIKMAFRSGQVDLPELAPRLPTHSITLPETFEDDDFDLPD-EI-------------TDIDLYDD---FSIPQSRNNL 143 (614)
T ss_pred HHHHHHHHhccccccCCCcccccccccccchhhhccccccccc-cc-------------cccccccc---cCccccccch
Confidence 9999999999999999999999999999999999999998885 11 01111111 1122223333
Q ss_pred CCCCCCCCCCCCCCCcchhccccccccccCCcccCCCCCCCCCCCcccccchhhhcccccccccccCCCCcccccCCCcc
Q 001182 161 DERFGDGDASQMGLDLDEDLLLDKGTAAGHGVSDADPQGSVKPTTHWEQDNISERMNEISEERTVNDGANQLERVGLDAE 240 (1131)
Q Consensus 161 DErFg~g~sS~~GlDLDedl~~~~~~~~~~~~~~~~~~~sv~p~~~~~~d~~~e~~~~~s~~~~~~~~~~~~~~~~~~~e 240 (1131)
++++..++.++ ...+.+-.+..+....-.......+++. ...+ ..|. | ...+..+..
T Consensus 144 de~~~~~~~~~---~~~~~~q~~~~~g~~~~~~~~~~~~~~~-------E~~~-------~~~~-~-----~s~~~~d~~ 200 (614)
T KOG1213|consen 144 DEITLLEDIEQ---LSIESLQLDDEFGEDFEGAPTPHNETYM-------ESFR-------HDME-N-----DSALTEDSI 200 (614)
T ss_pred hhhhcccCCCC---Cccccccccccccccccccccccccccc-------chhc-------cccc-c-----ccccccccc
Confidence 44333222211 0000000000000000000000000000 0011 1121 1 334445556
Q ss_pred ccccccCCCCCCCccCCCCccccccc-ccCcccccccccchhhhhhcccccCCCCCcccCCCCCCCCCCCCCCCCCCcce
Q 001182 241 PIEYAEAPSTPGLVQEPNLSSGQKAL-ASYDHFESEDQNSNELMATESRVNDLSNSDCHNGDGHTADWPLHKDSNHDTVQ 319 (1131)
Q Consensus 241 ~~~~aqaP~tpgl~eepn~s~v~~~~-~~~d~~~~e~~n~~~~~~~e~~~n~~s~~~~~~~~~~~~~~~~~~~~~~~~v~ 319 (1131)
+++ +|.||+++.+.+-++...-. .+.+|..-+..+-+- |.....-...+-..+.++ ...+..|.++
T Consensus 201 ~~~---~~~tp~~~~e~~~s~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~----- 267 (614)
T KOG1213|consen 201 FIE---GPTTPNLVLESERSRSREEPGSNEDDEDGDEEEDDR--GTQGSESPTENNIHKVED---HDSSEENNLD----- 267 (614)
T ss_pred ccc---CCCCCcccccCccccccccccccccccchhhhhhhh--ccccCCCcchhhccCCcc---cccccccccc-----
Confidence 665 99999999999998877644 666666655543322 333332111111122111 0111110000
Q ss_pred ecCCcCCCccchhhhhhhccccccccCCCCCCccccccccccccccccccccccccccCCCCCCCCCCCCCcchhhccCC
Q 001182 320 CMLPEKNGYHVRDAAVKQAESLDIHACPDAKDPKMLNIDVAHEETASVSINVLKPCSYHTSDPHMSSPGHDNSLAQNLQP 399 (1131)
Q Consensus 320 ~~~~~~~~~~~~d~~i~q~~s~d~~~c~~~~~~~~ln~~~~~~~~~~~~~~~l~~C~~~~~~p~~~~~~~~~~~~~~~~~ 399 (1131)
.|...+- +++-...-..-++...+.- +.-+|..|...++..
T Consensus 268 ----------~ge~~~~-------------~~~~~~~~~~~~E~~~~ap--~~~~~~~~~~~~~~~-------------- 308 (614)
T KOG1213|consen 268 ----------DGETSAF-------------EDPPTSPEEAEEERALPAP--VGIESVSHDEPDSIL-------------- 308 (614)
T ss_pred ----------ccccccc-------------ccCCcccccCcccccccCC--CCccccccCCcchhc--------------
Confidence 0000000 0000000000000000000 001122221111000
Q ss_pred CccccccccccccccccccccCceeeccccccccccccCCCCCccccccCCCCcCccchhhhccchhhhcccc-ccCCCC
Q 001182 400 LGVDLHSSERSKMNQASVDVQGEECYLTDVMQSEKSQISGPSVCGDIQEDNGTLDEPLDNATASNNELKKLNN-SITSDL 478 (1131)
Q Consensus 400 ~~~~~~~~e~~~~~~~~~~vqge~c~~~d~~~~~~~~~s~~~~~~~~~~d~~k~d~~~~~~~~s~~~~e~ln~-~~~se~ 478 (1131)
=-++.--..++.... ....+ .|+..... ....++
T Consensus 309 -------------------~~~r~~~vd~~~~l~----------------~~~~~----------~ql~d~s~~~~~~~~ 343 (614)
T KOG1213|consen 309 -------------------RRKRKLSVDGVTLLS----------------EEEFK----------EQLADFSDILTSLDL 343 (614)
T ss_pred -------------------ccccccccccceecC----------------chhHH----------hhhcChhhhcccccc
Confidence 000111111211111 01111 12222222 455678
Q ss_pred CCcccccccCccccCCCCcccccccCccccccCCCCcccCcccccccccccccccccccccccccccccccccccCCCCC
Q 001182 479 PAPEKLLSVPEGLLNKPNDLIVESTPEKEVLAGSGGVDAGNKLNSGKKRSYTESTITVESLNSSESFGVDRTKRNSEFIP 558 (1131)
Q Consensus 479 p~pEklLs~p~~~~~~~~dll~e~Tp~k~~~~~~~~~~ag~~~isgkKRs~test~t~~S~~s~es~g~~~skrt~esiP 558 (1131)
+.|+|.|-.|.. -+.-.+|...-.|++. .+. ..++||.+.+++++..-.+.+..+.. ..+.+..-+|.
T Consensus 344 ~Pp~~~l~~~~~-~~~~~~~~~~~~~~~~----~~~-----~~~~~~~~~~~~~~~p~~~~~~~~~~--~~~~~~~~ei~ 411 (614)
T KOG1213|consen 344 APPTRVLMMPKE-TGRVEKLFSSPEPDLF----ANR-----LLFTGRLFLSLESLKPEDSVNREEGS--SNSDEFLREIE 411 (614)
T ss_pred CChHHHhhcccc-ccchhhhccCCCcccc----ccc-----ccccccchhhhhcccccccccccccc--cccccchhhcC
Confidence 888888888887 4444567766666655 111 12889999999999999999988876 88888899999
Q ss_pred CCchhhhhhhcccccccccccCCCCchhhhhhhcccccccchhhhcccccccceeehhhhhhhhhcChHHHHHhhhcCCC
Q 001182 559 DDDDLLSSILVGRKSSVLKMKPTPPVREVASRKRARSASQTNALKRKVLMDDTMVLHGDVIRQQLTNTEDIRRIRKKAPC 638 (1131)
Q Consensus 559 dDdDlLsSILVGrrss~lkmkptP~~pe~~smKr~R~~sr~~a~KRKv~mDD~MVlhgD~IRQQLt~TEDIRRiRkKAPC 638 (1131)
.+++.++.+.|++.+ ...-|+-+...++-+..|++.+++.|..+.+++.+|..++.||.++++++||
T Consensus 412 ~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~aq~~~~~~~~~~~~~~~~ 478 (614)
T KOG1213|consen 412 RDVEPLSPANVSVAS-------------LDVSKQESPEQASDAVSREFLSPLEPREEDSIPDAQSMPSQDNILIPKEVPT 478 (614)
T ss_pred CchhcccCccccccc-------------ccCCcccChhhhcccccccccCCcchhhcccCCCcccccccccccccccccC
Confidence 999999999998221 1122556666788889999999999999999999999999999999999999
Q ss_pred Cccce
Q 001182 639 TGPEI 643 (1131)
Q Consensus 639 Tr~EI 643 (1131)
+-.++
T Consensus 479 ~~~~~ 483 (614)
T KOG1213|consen 479 PNPEP 483 (614)
T ss_pred cccCC
Confidence 99887
No 2
>PF04825 Rad21_Rec8_N: N terminus of Rad21 / Rec8 like protein; InterPro: IPR006910 This domain represents a conserved N-terminal region found in eukaryotic cohesins of the Rad21, Rec8 and Scc1 families. Rad21/Rec8 like proteins mediate sister chromatid cohesion during mitosis and meiosis, as part of the cohesin complex []. Cohesion is necessary for homologous recombination (including double-strand break repair) and correct chromatid segregation. These proteins may also be involved in chromosome condensation. Dissociation at the metaphase to anaphase transition causes loss of cohesion and chromatid segregation [].; GO: 0005515 protein binding
Probab=100.00 E-value=5.3e-35 Score=275.15 Aligned_cols=111 Identities=54% Similarity=0.917 Sum_probs=109.6
Q ss_pred CCcchhhhhccCCchhhhhhhhccCcCcchhhcccchHHHHHHhcCCCCcchhhhhhccccceEEEEeccchhHHHhHHH
Q 001182 1 MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLLLGVVRIYSRKVNYLFDDCSE 80 (1131)
Q Consensus 1 MFYS~~LLsKKGpLa~IWLAATl~KKLsKkqIl~tDI~ksceeIl~Pe~PLALRLSGqLLlGVVRIYSRKvkYLL~Dcn~ 80 (1131)
||||++||+|+|||++||+|||+++||+|++|+++||+++|++|++|+.|+|||+|||||+||||||+||++||++||+.
T Consensus 1 MFy~~~iL~k~~~l~~vWlaat~~~kl~k~~i~~vdI~~~c~~I~~~~~~~sLRlss~LL~Gvv~Iy~kKv~yLl~D~~~ 80 (111)
T PF04825_consen 1 MFYSHDILSKKGPLATVWLAATLGKKLSKKQILQVDIPKICEEIIEPENPLSLRLSSQLLYGVVRIYSKKVEYLLSDCNE 80 (111)
T ss_pred CCccHHHHhcCCcHHHHHHHHhccCCCCHHHHHhCCHHHHHHHHhCCCcCeeHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccccCCCCCCCCCCCCccccC
Q 001182 81 ALLKIKQAFRSTAVDLPPEESTAPYHSITLP 111 (1131)
Q Consensus 81 aL~KIk~aFRs~~VDLP~e~~~A~~eaITLP 111 (1131)
++.+|+++|++..+|+|.++..+++++||||
T Consensus 81 ~~~~l~~~~~~~~~dl~~~~~~~~~~~it~p 111 (111)
T PF04825_consen 81 LLSKLKRAFRPKKIDLPKDKTKASRNAITLP 111 (111)
T ss_pred HHHHHHHHhcccccCCCccccCCChhhccCc
Confidence 9999999999888999999999999999998
No 3
>PF04824 Rad21_Rec8: Conserved region of Rad21 / Rec8 like protein; InterPro: IPR006909 This domain represents a conserved C-terminal region found in eukaryotic cohesins of the Rad21, Rec8 and Scc1 families. Rad21/Rec8 like proteins mediate sister chromatid cohesion during mitosis and meiosis, as part of the cohesin complex []. Cohesion is necessary for homologous recombination (including double-strand break repair) and correct chromatid segregation. These proteins may also be involved in chromosome condensation. Dissociation at the metaphase to anaphase transition causes loss of cohesion and chromatid segregation [].; GO: 0000228 nuclear chromosome; PDB: 1W1W_E.
Probab=99.63 E-value=6.2e-17 Score=137.70 Aligned_cols=52 Identities=52% Similarity=0.815 Sum_probs=37.4
Q ss_pred ceeeHHHHhccCCHHHHHHHHHHhhhccCCCceeecCCCCCcceEeccCCcc
Q 001182 1075 KVLALDHLLVGKTRKEASRMFFETLVLKTKDYIHVEQARPLDNINIKPGAKL 1126 (1131)
Q Consensus 1075 ~slSfsqLl~G~TRKeAAr~FYElLVLKTrd~IdVeQeEPYGDI~IsaGPkL 1126 (1131)
+.++|+.|+.|+|||+||++||++|||+|+++|+|+|.+|||||.|++||+|
T Consensus 4 ~~~~~~~l~~~~tr~~AA~~Fy~~LvL~t~~~I~v~Q~~pygdI~I~~~~~~ 55 (55)
T PF04824_consen 4 ESLSLSQLPEGMTRKEAARAFYELLVLATKGYIDVKQEEPYGDIEISPGPKF 55 (55)
T ss_dssp HHTT----------HHHHHHHHHHHHHHHHTSEEEEESSTT--EEEEE-GGG
T ss_pred cccHHHHhhCCCCHHHHHHHHHHHHHHhhCCeEEeecCCCCCCeEEeeCCCC
Confidence 4688999999999999999999999999999999999999999999999987
No 4
>PF02616 ScpA_ScpB: ScpA/B protein; InterPro: IPR003768 This family represents ScpA, which along with ScpB (IPR005234 from INTERPRO) interacts with SMC in vivo forming a complex that is required for chromosome condensation and segregation [, ]. The SMC-Scp complex appears to be similar to the MukB-MukE-Muk-F complex in Escherichia coli [], where MukB (IPR007406 from INTERPRO) is the homologue of SMC. ScpA and ScpB have little sequence similarity to MukE (IPR007385 from INTERPRO) or MukF (IPR005582 from INTERPRO), they are predicted to be structurally similar, being predominantly alpha-helical with coiled coil regions. In general scpA and scpB form an operon in most bacterial genomes. Flanking genes are highly variable suggesting that the operon has moved throughout evolution. Bacteria containing an smc gene also contain scpA or scpB but not necessarily both. An exception is found in Deinococcus radiodurans, which contains scpB but neither smc nor scpA. In the archaea the gene order SMC-ScpA is conserved in nearly all species, as is the very short distance between the two genes, indicating co-transcription of the both in different archaeal genera and arguing that interaction of the gene products is not confined to the homologues in Bacillus subtilis. It would seem probable that, in light of all the studies, SMC, ScpA and ScpB proteins or homologues act together in chromosome condensation and segregation in all prokaryotes [].
Probab=96.28 E-value=0.0048 Score=64.99 Aligned_cols=48 Identities=25% Similarity=0.380 Sum_probs=45.9
Q ss_pred ceeeHHHHhccCCHHHHHHHHHHhhhccCCCceeecCCCCCcceEecc
Q 001182 1075 KVLALDHLLVGKTRKEASRMFFETLVLKTKDYIHVEQARPLDNINIKP 1122 (1131)
Q Consensus 1075 ~slSfsqLl~G~TRKeAAr~FYElLVLKTrd~IdVeQeEPYGDI~Isa 1122 (1131)
..++|++|+.+.+|.+....|--+|-|.+.|.|++.|.+|||+|.|..
T Consensus 194 ~~~~f~~l~~~~~r~~~V~tFLAlLeL~k~~~i~i~Q~e~fgdI~I~~ 241 (242)
T PF02616_consen 194 GWVSFSELFEEPSRSEVVVTFLALLELVKQGKIEIEQEEPFGDIYIEL 241 (242)
T ss_pred CceeHHHHcCcCCcCeeHHHHHHHHHHhhcCcEEEEEcCCCCceEEEe
Confidence 479999999999999999999999999999999999999999999974
No 5
>PRK00104 scpA segregation and condensation protein A; Reviewed
Probab=95.84 E-value=0.014 Score=62.62 Aligned_cols=50 Identities=26% Similarity=0.330 Sum_probs=46.8
Q ss_pred ceeeHHHHhccCCHHHHHHHHHHhhhccCCCceeecCCCCCcceEeccCC
Q 001182 1075 KVLALDHLLVGKTRKEASRMFFETLVLKTKDYIHVEQARPLDNINIKPGA 1124 (1131)
Q Consensus 1075 ~slSfsqLl~G~TRKeAAr~FYElLVLKTrd~IdVeQeEPYGDI~IsaGP 1124 (1131)
..++|.+|+.+.+|++....|--+|.|.+.|.|.+.|.++||+|.|.++.
T Consensus 190 ~~~~f~~l~~~~~~~~~v~tFLAlLEL~k~~~i~l~Q~~~f~~I~i~~~~ 239 (242)
T PRK00104 190 KRLSFSELFKEPSKNEFVVTFLALLELIKLQEIIVEQEENFGEIYLEKGE 239 (242)
T ss_pred CcEeHHHHhCCCCchhhHHHHHHHHHHHhcCeeEEEEcCCCCeEEEEeCC
Confidence 36999999988999999999999999999999999999999999998754
No 6
>COG1354 scpA Rec8/ScpA/Scc1-like protein (kleisin family) [Replication, recombination, and repair]
Probab=92.89 E-value=0.17 Score=54.76 Aligned_cols=50 Identities=24% Similarity=0.398 Sum_probs=41.0
Q ss_pred eeeHHHHhc-cCCHHHHHHHHHHhhhccCCCceeecCCCCCcceEeccCCc
Q 001182 1076 VLALDHLLV-GKTRKEASRMFFETLVLKTKDYIHVEQARPLDNINIKPGAK 1125 (1131)
Q Consensus 1076 slSfsqLl~-G~TRKeAAr~FYElLVLKTrd~IdVeQeEPYGDI~IsaGPk 1125 (1131)
.+.|+.+.. ...+-++...|--+|.|.+.|.|++.|++|||+|.|..+..
T Consensus 191 ~~~~~~~~~~~~~~~~vv~~FlAlLeL~k~~~v~l~Qee~fgdI~i~~~~~ 241 (248)
T COG1354 191 VLRFSDLFSPEERKDEVVSTFLALLELVKEGKVELEQEEPFGDIYIRLLGE 241 (248)
T ss_pred cccHHHhcccccchhHHHHHHHHHHHHHhcCceEEEecccccceEEEecCC
Confidence 577787776 34455555589999999999999999999999999998753
No 7
>PRK00478 scpA segregation and condensation protein A/unknown domain fusion protein; Provisional
Probab=86.68 E-value=0.72 Score=55.08 Aligned_cols=64 Identities=16% Similarity=0.130 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhhccCCCCCCceeeHHHHhc----cCCHHHHHHHHHHhhhccCCCceeecCCCCCcceEeccC
Q 001182 1053 SRTRAVSKYLQTLFVREPVQGRKVLALDHLLV----GKTRKEASRMFFETLVLKTKDYIHVEQARPLDNINIKPG 1123 (1131)
Q Consensus 1053 KRT~qma~~LRt~F~~~~~~G~~slSfsqLl~----G~TRKeAAr~FYElLVLKTrd~IdVeQeEPYGDI~IsaG 1123 (1131)
.+...|++.|+.. +...++|.+|+. +.+|.+....|--+|.|.+.+.|.+.|.++||+|.|...
T Consensus 346 e~m~~I~~~L~~~-------~~~~~~F~~L~~~~~~~~sr~evVvtFLAlLEL~K~~~I~i~Q~~~f~~I~i~~~ 413 (505)
T PRK00478 346 QVQNEILSIIKQF-------LYNQVSLKRVLLKINHKISLMYFVTAFVALLVLVNNQKIDLEQKNDDEELYICLL 413 (505)
T ss_pred HHHHHHHHHHHhc-------CCCeEEhHHHhhhcccCCCcceEehHHHHHHHHhccCeEEEEEcCCCCeEEEEEc
Confidence 3445555555531 113599999997 358899999999999999999999999999999999765
No 8
>PF06278 DUF1032: Protein of unknown function (DUF1032); InterPro: IPR009378 This entry includes a regulatory subunit of Non-SMC condensin II complex called H2. Non-SMC condensin II complex seems to provide chromosomes with an additional level of organisation and rigidity and in establishing mitotic chromosome architecture. May play a role in lineage-specific role in T-cell development.
Probab=56.24 E-value=4.4 Score=49.33 Aligned_cols=40 Identities=20% Similarity=0.342 Sum_probs=37.1
Q ss_pred ceeeHHHHhccCCHHHHHHHHHHhhhccCCCceeecCCCC
Q 001182 1075 KVLALDHLLVGKTRKEASRMFFETLVLKTKDYIHVEQARP 1114 (1131)
Q Consensus 1075 ~slSfsqLl~G~TRKeAAr~FYElLVLKTrd~IdVeQeEP 1114 (1131)
...+|.+|+.|+.+-+++|.|+.+|.|+..+=|++.|..+
T Consensus 493 ~~~~f~~vv~~~~~~ev~R~fla~LqLaN~~nv~i~~~~~ 532 (565)
T PF06278_consen 493 EKATFADVVEGKPPYEVCRYFLASLQLANDGNVEISQDPG 532 (565)
T ss_pred CeeeHHHHhCCCChhHHHHHHHHHHHHhcCCCeeeccCCc
Confidence 3579999999999999999999999999999999998765
No 9
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=34.41 E-value=17 Score=44.87 Aligned_cols=23 Identities=48% Similarity=0.827 Sum_probs=18.9
Q ss_pred eeehhhhhhhhhcChHHHHHhhhc
Q 001182 612 MVLHGDVIRQQLTNTEDIRRIRKK 635 (1131)
Q Consensus 612 MVlhgD~IRQQLt~TEDIRRiRkK 635 (1131)
.-|-|.++|||+|||| .||+-|.
T Consensus 907 ~~iT~NaLRQQ~tNtE-~RRLeKe 929 (980)
T KOG0447|consen 907 LAITANTLRQQLTNTE-VRRLEKN 929 (980)
T ss_pred HHHhHHHHHHHHhhHH-HHHHHHH
Confidence 3467999999999998 5888773
No 10
>KOG1213 consensus Sister chromatid cohesion complex Cohesin, subunit RAD21/SCC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=33.48 E-value=28 Score=43.17 Aligned_cols=78 Identities=35% Similarity=0.500 Sum_probs=67.5
Q ss_pred cccCCccHHHHHHHHHHHHhhccCCCCCCceeeHHHHhcc-CCHHHHHHHHHHhhhccCCCceeecCCCCCcceEeccCC
Q 001182 1046 LENSGWSSRTRAVSKYLQTLFVREPVQGRKVLALDHLLVG-KTRKEASRMFFETLVLKTKDYIHVEQARPLDNINIKPGA 1124 (1131)
Q Consensus 1046 ~Ee~~WSKRT~qma~~LRt~F~~~~~~G~~slSfsqLl~G-~TRKeAAr~FYElLVLKTrd~IdVeQeEPYGDI~IsaGP 1124 (1131)
++++.|+|||.+++..++ +... +...++|++++.+ .+||+||++||++|||||++||+|+|.+|||||.|++||
T Consensus 533 ~~~~~~~k~~~~~~~~~~--~~~~---~~~~~e~~~~l~~~~~Rk~Aa~~Ff~~LvLkt~~~i~v~Q~epygdI~i~~gp 607 (614)
T KOG1213|consen 533 QEERELAKRTEQILTSIQ--LEPE---TNGQIELSELLPNGPNRKQAARKFFSLLVLKTRQAIEVKQDEPYGDIIITPGP 607 (614)
T ss_pred cchHHHHHHHHHhhcccc--cccC---CccchhHHHhccCCCCHHHHHHHHHHHHHHhhccccccccCCcccceeeccCc
Confidence 348999999999999998 3322 2246788999965 599999999999999999999999999999999999999
Q ss_pred cccc
Q 001182 1125 KLMK 1128 (1131)
Q Consensus 1125 kL~k 1128 (1131)
+|+-
T Consensus 608 ~~~~ 611 (614)
T KOG1213|consen 608 NFHI 611 (614)
T ss_pred cccc
Confidence 9863
No 11
>PF06278 DUF1032: Protein of unknown function (DUF1032); InterPro: IPR009378 This entry includes a regulatory subunit of Non-SMC condensin II complex called H2. Non-SMC condensin II complex seems to provide chromosomes with an additional level of organisation and rigidity and in establishing mitotic chromosome architecture. May play a role in lineage-specific role in T-cell development.
Probab=28.78 E-value=68 Score=39.59 Aligned_cols=31 Identities=32% Similarity=0.489 Sum_probs=27.0
Q ss_pred hccccceEEEEeccchhHHHhHHHHHHHHHH
Q 001182 57 SHLLLGVVRIYSRKVNYLFDDCSEALLKIKQ 87 (1131)
Q Consensus 57 GqLLlGVVRIYSRKvkYLL~Dcn~aL~KIk~ 87 (1131)
+-|+.|-+-||||||+|||.=+-.+|.-|..
T Consensus 7 alliQgsa~vYskKVeyly~lv~~~l~~l~~ 37 (565)
T PF06278_consen 7 ALLIQGSACVYSKKVEYLYSLVYQALDFLSG 37 (565)
T ss_pred HHHHhcchhhHHHHHHHHHHHHHHHHHHHhc
Confidence 3478999999999999999999999987753
Done!