Your job contains 1 sequence.
>001183
MVLATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDF
KSKAQNLSLNDKLVFNSQNLKISETHSDIVPRPVKAQHRVEDGVLHVGVMCKEERLRVLQ
TFEGVRGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFS
LDEGATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKS
IGCSTSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTTSEIVPLVKCRPGFNL
SHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSFVK
TQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYA
SDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFL
AFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVP
VQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVI
AVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAM
QQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHEN
QLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKT
SIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLD
GDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAH
LVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYI
SFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEE
MNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSS
CKENEHPQLASAWYHVTYSPSYCKERMALLSFPWIVGDILLNIKSVNSRKA
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 001183
(1131 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2136068 - symbol:RDR2 "RNA-dependent RNA polym... 3768 0. 1
TAIR|locus:2006822 - symbol:RDR1 "AT1G14790" species:3702... 1607 6.7e-173 2
UNIPROTKB|Q8LHH9 - symbol:SHL2 "Probable RNA-dependent RN... 1418 4.6e-150 2
TAIR|locus:2114633 - symbol:RDR6 "AT3G49500" species:3702... 1415 8.4e-145 1
UNIPROTKB|G4NJ50 - symbol:MGG_02748 "RNA-dependent RNA po... 1009 8.0e-110 3
POMBASE|SPAC6F12.09 - symbol:rdp1 "RNA-directed RNA polym... 882 2.5e-88 1
WB|WBGene00004510 - symbol:rrf-3 species:6239 "Caenorhabd... 780 7.9e-76 2
WB|WBGene00004508 - symbol:rrf-1 species:6239 "Caenorhabd... 509 6.4e-65 3
WB|WBGene00004509 - symbol:rrf-2 species:6239 "Caenorhabd... 454 2.1e-61 3
ASPGD|ASPL0000040001 - symbol:rrpC species:162425 "Emeric... 646 2.7e-59 2
WB|WBGene00001214 - symbol:ego-1 species:6239 "Caenorhabd... 497 3.4e-44 2
DICTYBASE|DDB_G0291249 - symbol:rrpB "RNA-directed RNA po... 496 2.4e-40 3
DICTYBASE|DDB_G0289659 - symbol:rrpA "RNA-directed RNA po... 493 1.2e-38 4
DICTYBASE|DDB_G0280963 - symbol:rrpC "RNA-directed RNA po... 379 1.2e-37 4
ASPGD|ASPL0000071805 - symbol:rrpB species:162425 "Emeric... 193 9.6e-27 4
TAIR|locus:2052020 - symbol:AT2G19930 species:3702 "Arabi... 175 2.8e-16 3
TAIR|locus:2052040 - symbol:AT2G19910 species:3702 "Arabi... 178 8.9e-15 5
TAIR|locus:2052030 - symbol:AT2G19920 species:3702 "Arabi... 170 1.7e-13 3
>TAIR|locus:2136068 [details] [associations]
symbol:RDR2 "RNA-dependent RNA polymerase 2" species:3702
"Arabidopsis thaliana" [GO:0003968 "RNA-directed RNA polymerase
activity" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0016441 "posttranscriptional gene silencing" evidence=ISS]
[GO:0009751 "response to salicylic acid stimulus" evidence=IEP]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=RCA;IMP] [GO:0016458 "gene silencing" evidence=IMP]
[GO:0007267 "cell-cell signaling" evidence=RCA;IMP] [GO:0016246
"RNA interference" evidence=RCA;IMP] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0010495 "long-distance posttranscriptional gene
silencing" evidence=IMP] [GO:0050832 "defense response to fungus"
evidence=IMP] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0009616 "virus induced gene silencing"
evidence=RCA] [GO:0009855 "determination of bilateral symmetry"
evidence=RCA] [GO:0010014 "meristem initiation" evidence=RCA]
[GO:0010073 "meristem maintenance" evidence=RCA] [GO:0010267
"production of ta-siRNAs involved in RNA interference"
evidence=RCA] [GO:0016569 "covalent chromatin modification"
evidence=RCA] [GO:0031047 "gene silencing by RNA" evidence=RCA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=RCA] [GO:0043687 "post-translational protein
modification" evidence=RCA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=RCA] InterPro:IPR007855
Pfam:PF05183 EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL161531
GO:GO:0005730 GO:GO:0050832 GO:GO:0007267 GO:GO:0003723
GO:GO:0030422 EMBL:AF080120 EMBL:AL049876 GO:GO:0010495
GO:GO:0003968 HOGENOM:HOG000239464 KO:K11699
ProtClustDB:CLSN2682981 PANTHER:PTHR23079 IPI:IPI00535843
PIR:T01920 RefSeq:NP_192851.1 UniGene:At.43417
ProteinModelPortal:O82504 SMR:O82504 STRING:O82504 PaxDb:O82504
PRIDE:O82504 EnsemblPlants:AT4G11130.1 GeneID:826714
KEGG:ath:AT4G11130 TAIR:At4g11130 eggNOG:NOG252917
InParanoid:O82504 OMA:SKCAARM PhylomeDB:O82504
Genevestigator:O82504 Uniprot:O82504
Length = 1133
Score = 3768 (1331.5 bits), Expect = 0., P = 0.
Identities = 719/1132 (63%), Positives = 895/1132 (79%)
Query: 4 ATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSK 63
+TV +SN+PQT +A +LL FLE LG+++VFALEI T R NWK R RVQFT+L+ KS+
Sbjct: 10 STVKISNVPQTIVADELLRFLELHLGEDTVFALEIPTTRDNWKPRDFARVQFTTLEVKSR 69
Query: 64 AQNLSLNDKLVFNSQNLKISETHSDIVPRPVKAQHRVEDGVLHVGVM-CKEERLRVLQTF 122
AQ LS KL+F + NL++SE + DI+PRPV + R++D VL VG E+R L+ +
Sbjct: 70 AQLLSSQSKLLFKTHNLRLSEAYDDIIPRPVDPRKRLDDIVLTVGFPESDEKRFCALEKW 129
Query: 123 EGVRGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFSLD 182
+GVR W+L ++RR+EFWVW +S DC +K+E+ FED++ET+ ++
Sbjct: 130 DGVRCWILTEKRRVEFWVW----------------ESGDC-YKIEVRFEDIIETLSCCVN 172
Query: 183 EGAT-VNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKSI 241
A+ ++ L KLKYGPK++++V+ H+A+KF SDRY CKEDFDF W+RTTDFS +KSI
Sbjct: 173 GDASEIDAFLLKLKYGPKVFKRVT-VHIATKFKSDRYRFCKEDFDFMWIRTTDFSGSKSI 231
Query: 242 GCSTSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTTSEIVPLVKCRP-GFNL 300
G ST F E+ NG DI + P+Y+ED L +G+ F + ++IVPL+ G
Sbjct: 232 GTSTCFCLEVHNGSTMLDIFSGLPYYREDTLSLTYVDGKTFASAAQIVPLLNAAILGLEF 291
Query: 301 SHEVLFQLNSLVHNQKVSLVAA-DAELIQILSGLSMETALMVLQKLHKLKSICYDPVSFV 359
+E+LFQLN+LVH QK+SL AA D ELI+IL G+S+ETAL++L+KLH+ SICYDPV FV
Sbjct: 292 PYEILFQLNALVHAQKISLFAASDMELIKILRGMSLETALVILKKLHQQSSICYDPVFFV 351
Query: 360 KTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKY 419
KTQ+ + + K P S++KRL + N+MSC RA VTP KIY LGPELET+NYVVKNFA++
Sbjct: 352 KTQMQSVVKKMKHSPASAYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEH 411
Query: 420 ASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEF 479
SDFMRVTFVEEDWSKLPANALS + + G F KP RT IY+R+L+IL +GI +G K +EF
Sbjct: 412 VSDFMRVTFVEEDWSKLPANALSVNSKEGYFVKPSRTNIYNRVLSILGEGITVGPKRFEF 471
Query: 480 LAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVV 539
LAFSASQLR NSVWMFASN++V AED+R WMGCF KIRS+SKCAARMGQLFS+S+QTL+V
Sbjct: 472 LAFSASQLRGNSVWMFASNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIV 531
Query: 540 PVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGV 599
QDVE IPD+EVT+DG YCFSDGIGKISL+FA+QVAQKCGLSH PSAFQIRYGGYKGV
Sbjct: 532 RAQDVEQIPDIEVTTDGADYCFSDGIGKISLAFAKQVAQKCGLSHVPSAFQIRYGGYKGV 591
Query: 600 IAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEA 659
IAVDR+SFRKLSLR SMLKF+S NRMLNVT+W+ESMPCFLNREII LLSTLG++D +FEA
Sbjct: 592 IAVDRSSFRKLSLRDSMLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEA 651
Query: 660 MQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHE 719
MQ L +LG ML +R+AAL+VLQKL+G +SKN+LVKMLLQGY P+ EPYLSMML HHE
Sbjct: 652 MQAVHLSMLGNMLEDRDAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHE 711
Query: 720 NQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDK 779
+QLS+LKSRCRI VPKGR+LIGC DE GIL YGQV+VRVT+T+ EL+S+DQS+F ++D++
Sbjct: 712 SQLSELKSRCRILVPKGRILIGCMDEMGILEYGQVYVRVTLTKAELKSRDQSYFRKIDEE 771
Query: 780 TSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDL 839
TS+V GKV+VTKNPCLHPGD+RVL+A+YE+ EEK Y+DCIIFPQKGERPHPNECSGGDL
Sbjct: 772 TSVVIGKVVVTKNPCLHPGDIRVLDAIYEVHFEEKGYLDCIIFPQKGERPHPNECSGGDL 831
Query: 840 DGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTA 899
DGD FF+SWD +IP E +PPMDY G R R+MDHDVTLEEIHKFFVDYMI+DTLG ISTA
Sbjct: 832 DGDQFFVSWDEKIIPSEMDPPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVISTA 891
Query: 900 HLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRY 959
HLVHADRDP+KARS KCL LA LHS AVDFAKTGAPAEMP ALKP+EFPDF+ER +KP Y
Sbjct: 892 HLVHADRDPEKARSQKCLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTY 951
Query: 960 ISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEE 1019
IS V GKLYRA S+ Q + A + +A YD LE GFE+F+ A++H++MY E
Sbjct: 952 ISESVFGKLYRAVKSSLAQRKPEAESEDTVA---YDVTLEEAGFESFIETAKAHRDMYGE 1008
Query: 1020 EMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGS 1079
++ +LM YYGA+ E+EILTG L+ + YL RDNRRYGDMKDRI LS K+L EA WF
Sbjct: 1009 KLTSLMIYYGAANEEEILTGILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGWFEK 1068
Query: 1080 SCK-ENEHPQLASAWYHVTYSPSYCKERMALLSFPWIVGDILLNIKSVNSRK 1130
SC+ E + +LASAWY+VTY+P++ E++ LSFPWIVGD+LL+IK+ N+++
Sbjct: 1069 SCEDEQQKKKLASAWYYVTYNPNHRDEKLTFLSFPWIVGDVLLDIKAENAQR 1120
>TAIR|locus:2006822 [details] [associations]
symbol:RDR1 "AT1G14790" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0016441
"posttranscriptional gene silencing" evidence=ISS] [GO:0009615
"response to virus" evidence=IMP] [GO:0009751 "response to
salicylic acid stimulus" evidence=IEP] [GO:0060148 "positive
regulation of posttranscriptional gene silencing" evidence=IMP]
[GO:0000165 "MAPK cascade" evidence=RCA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=RCA] [GO:0006612 "protein
targeting to membrane" evidence=RCA] [GO:0009617 "response to
bacterium" evidence=RCA] [GO:0009862 "systemic acquired resistance,
salicylic acid mediated signaling pathway" evidence=RCA]
[GO:0009867 "jasmonic acid mediated signaling pathway"
evidence=RCA] [GO:0010310 "regulation of hydrogen peroxide
metabolic process" evidence=RCA] [GO:0010363 "regulation of
plant-type hypersensitive response" evidence=RCA] [GO:0031348
"negative regulation of defense response" evidence=RCA] [GO:0035304
"regulation of protein dephosphorylation" evidence=RCA] [GO:0010025
"wax biosynthetic process" evidence=IGI] InterPro:IPR007855
Pfam:PF05183 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0006952
GO:GO:0010025 GO:GO:0009751 GO:GO:0003723 GO:GO:0009615
GO:GO:0031047 EMBL:AC006917 UniGene:At.70434 GO:GO:0003968
EMBL:AY148431 EMBL:AK228731 EMBL:AJ011977 IPI:IPI00542699
RefSeq:NP_172932.1 UniGene:At.27823 ProteinModelPortal:Q9LQV2
SMR:Q9LQV2 STRING:Q9LQV2 PaxDb:Q9LQV2 PRIDE:Q9LQV2
EnsemblPlants:AT1G14790.1 GeneID:838044 KEGG:ath:AT1G14790
TAIR:At1g14790 eggNOG:NOG307726 HOGENOM:HOG000239464
InParanoid:Q9LQV2 KO:K11699 OMA:YEDYITE PhylomeDB:Q9LQV2
ProtClustDB:CLSN2682981 Genevestigator:Q9LQV2 GO:GO:0060148
PANTHER:PTHR23079 Uniprot:Q9LQV2
Length = 1107
Score = 1607 (570.8 bits), Expect = 6.7e-173, Sum P(2) = 6.7e-173
Identities = 333/680 (48%), Positives = 447/680 (65%)
Query: 455 RTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFN 514
RTK+Y RI ++L+DGIVIGDK +EFLAFS+SQLR NS WMFA D ++A +R WMG F+
Sbjct: 428 RTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPIDRITAAHIRAWMGDFD 487
Query: 515 KIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFAR 574
IR+V+K AAR+GQ FSSS++TL V ++E+IPDVE+ S G Y FSDGIGKIS FAR
Sbjct: 488 HIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTRYVFSDGIGKISAEFAR 547
Query: 575 QVAQKCGLSH-TPSAFQIRYGGYKGVIAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSE 633
+VA+KCGL+ +PSAFQIRYGGYKGV+AVD NS +KLSLR+SM KFES N L+V WS+
Sbjct: 548 KVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSKFESENTKLDVLAWSK 607
Query: 634 SMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNI 693
PC++NR++I+LLSTLGV D VFE Q++ + L +L + A + L + ++ NI
Sbjct: 608 YQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLEAHEALGLMAPGENTNI 667
Query: 694 LVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQ 753
L ++L GY+P+ EP+LSMML + ++L +L+++ RI++ GR ++GC DET L YGQ
Sbjct: 668 LKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMMGCLDETRTLEYGQ 727
Query: 754 VFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEE 813
V V+ + + + F I+ G V+V KNPCLHPGDVRVL+AV L
Sbjct: 728 VVVQYS----DPMRPGRRF---------IITGPVVVAKNPCLHPGDVRVLQAVNVPALNH 774
Query: 814 KDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDH 873
VDC++FPQKG RPHPNECSG DLDGDI+F+ WD +L+P T PMDYT ++I+DH
Sbjct: 775 M--VDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEPMDYTPEPTQILDH 832
Query: 874 DVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTG 933
DVT+EE+ ++F +Y++ND+LG I+ AH AD++P KA S C+ LA S AVDF KTG
Sbjct: 833 DVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAKKFSTAVDFPKTG 892
Query: 934 APAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEAS 993
A +P L KE+PDFME+ DKP Y S V+GKL+R + + S ++ +A S
Sbjct: 893 VAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKSFTLDVASKS 952
Query: 994 YDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNR 1053
YD D+EVDGFE ++ A K Y+ ++ LM+YYG TE EIL+G + + + R
Sbjct: 953 YDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEAEILSGGIMRMSKSFTK--R 1010
Query: 1054 RYGDMKDRILLSAKNLQNEAKEWFGSSCKENEHPQLASAWYHVTYSPSYCK------ERM 1107
R + R + + L+ E F +S +E ASAWYHVTY SY R
Sbjct: 1011 RDAESIGR---AVRALRKETLSLFNASEEEENESAKASAWYHVTYHSSYWGLYNEGLNRD 1067
Query: 1108 ALLSFPWIVGDILLNIKSVN 1127
LSF W V D L+ IK N
Sbjct: 1068 HFLSFAWCVYDKLVRIKKTN 1087
Score = 1184 (421.8 bits), Expect = 3.4e-128, Sum P(2) = 3.4e-128
Identities = 258/601 (42%), Positives = 388/601 (64%)
Query: 164 FKVEILFEDVLETVGFSLDEGATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKE 223
+++E+ +E++ + + +G + ++ ++ PKI++K P + F ++ +
Sbjct: 144 YRLELSYENIWQ-IDLHSPQGRSSKFLVIQVIGAPKIFEKEDQP-INLLFGIMDFY--SD 199
Query: 224 DFDFFWVRTTDFSVTKSIGCSTSFFWEIKNGLLASDISNIFPFYKEDK-TDLILEEGEEF 282
D W+RTTDF+ + IG ST+F E+ L D F Y E + + ++E G +
Sbjct: 200 GSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANYAEHRASSFLIESGSSY 259
Query: 283 CTTSE-IVPLVKCRPGFNLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALM- 340
+ + +VP+V PGF+L E+LF+LN+LV N +S A D + ++L+ + AL+
Sbjct: 260 SSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGPALDLDFYRLLNQKKYDRALID 319
Query: 341 -VLQKLHKLKSICYDPVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKI 399
L+KL L CY+P +++ + K +PLS L D ++ YR VTP ++
Sbjct: 320 HCLEKLFHLGECCYEPAHWLRDEYKKWISKGK-LPLSPTISL-DDGLVYMYRVQVTPARV 377
Query: 400 YCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALS--TSIQRGIFSKPYRTK 457
Y GPE+ SN V+++++KY ++F+RV+FV+ED K+ + LS +S QR RTK
Sbjct: 378 YFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRSMDLSPRSSTQR-------RTK 430
Query: 458 IYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIR 517
+Y RI ++L+DGIVIGDK +EFLAFS+SQLR NS WMFA D ++A +R WMG F+ IR
Sbjct: 431 LYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPIDRITAAHIRAWMGDFDHIR 490
Query: 518 SVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVA 577
+V+K AAR+GQ FSSS++TL V ++E+IPDVE+ S G Y FSDGIGKIS FAR+VA
Sbjct: 491 NVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTRYVFSDGIGKISAEFARKVA 550
Query: 578 QKCGLSH-TPSAFQIRYGGYKGVIAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMP 636
+KCGL+ +PSAFQIRYGGYKGV+AVD NS +KLSLR+SM KFES N L+V WS+ P
Sbjct: 551 RKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSKFESENTKLDVLAWSKYQP 610
Query: 637 CFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVK 696
C++NR++I+LLSTLGV D VFE Q++ + L +L + A + L + ++ NIL
Sbjct: 611 CYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLEAHEALGLMAPGENTNILKA 670
Query: 697 MLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFV 756
++L GY+P+ EP+LSMML + ++L +L+++ RI++ GR ++GC DET L YGQV V
Sbjct: 671 LILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMMGCLDETRTLEYGQVVV 730
Query: 757 R 757
+
Sbjct: 731 Q 731
Score = 95 (38.5 bits), Expect = 6.7e-173, Sum P(2) = 6.7e-173
Identities = 29/121 (23%), Positives = 54/121 (44%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKA 64
T+ V P A+++ FLE G +V+A+++ + R VQFTS + ++
Sbjct: 4 TIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGP-RVYAIVQFTS-ERHTRL 61
Query: 65 QNLSLNDKLVFNSQNLKISETHSDIVPRPVKAQHRVEDGVLHVGVMCKEERLRVLQTFEG 124
+ ++L + LK E DIVP+P + H + + G ++ L + +
Sbjct: 62 IITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQD 121
Query: 125 V 125
V
Sbjct: 122 V 122
>UNIPROTKB|Q8LHH9 [details] [associations]
symbol:SHL2 "Probable RNA-dependent RNA polymerase SHL2"
species:39947 "Oryza sativa Japonica Group" [GO:0010492
"maintenance of shoot apical meristem identity" evidence=IMP]
[GO:0016246 "RNA interference" evidence=IMP] InterPro:IPR007855
Pfam:PF05183 GO:GO:0005634 GO:GO:0016246 GO:GO:0003723
GO:GO:0048440 GO:GO:0048366 GO:GO:0010492 GO:GO:0010267
EMBL:AP008207 GO:GO:0048544 GO:GO:0009616 GO:GO:0003968
eggNOG:NOG307726 HOGENOM:HOG000239464 PANTHER:PTHR23079 OMA:SCAEQGN
EMBL:AB353923 EMBL:AP004357 RefSeq:NP_001043229.1 UniGene:Os.30747
EnsemblPlants:LOC_Os01g34350.1 GeneID:4323938 Gramene:Q8LHH9
ProtClustDB:CLSN2691477 BRENDA:2.7.7.48 Uniprot:Q8LHH9
Length = 1218
Score = 1418 (504.2 bits), Expect = 4.6e-150, Sum P(2) = 4.6e-150
Identities = 367/986 (37%), Positives = 533/986 (54%)
Query: 162 CCFKVEILFEDVLETVGFSLDEGATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHIC 221
C K+E DVLE + LD +L +L P ++ + + P D
Sbjct: 213 CDVKLEFPVRDVLEVRLYRLD-----CSLLLRLAAAPLVHYRTADDDFHEPVPFDLL--- 264
Query: 222 KEDFDFFWVRTTDFSVTKSIG-CST---SF---FWEIKNGLLASDISNIFPFYK-----E 269
D D W+RTTD + + +IG C SF FW + L
Sbjct: 265 --DDDDPWIRTTDITPSGAIGRCGVYRISFSARFWPKMDRALDYMRERRVAIVDCGGGWG 322
Query: 270 DKTDLILEEGEEFCTTSEIVPLVKCRPGFNLSHEVLFQLNSLVHNQKVSLVAADAELIQI 329
+ L + + EF + V + L +LF +N+LVH ++ E +
Sbjct: 323 PRRGLTVRDELEFGEPMQDV-FFCLQHAEGLKFPLLFMVNALVHKGIINQHQLTPEFFSL 381
Query: 330 LSGLSMETA-LMVLQKLHKLKSICYDPVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMS 388
L G S E + L+ K +D +K L+ + RN K L K DH +
Sbjct: 382 L-GRSEENVNVAALRDFWGDKFPVFDACGRLKKALNRVARNPK---LLCSKVGDDHAEVR 437
Query: 389 CYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALST---SI 445
R ++TP + YCL PE+E SN V++++ + A F+RVTF++E L N L++ I
Sbjct: 438 --RLVITPTRAYCLPPEVERSNRVLRHYHEVADRFLRVTFMDEGMQVLNNNVLNSFTAPI 495
Query: 446 QRGIFSKPY--RTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSA 503
+ + S + +T +Y R+ +L +G + + Y FLAFS++QLR+ S W FA + + +
Sbjct: 496 VKDLMSNFFQQKTTVYKRVRMLLTEGFHMCGRKYSFLAFSSNQLRDKSAWFFAEDRKTTV 555
Query: 504 EDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSD 563
E +R WMG F ++V+K AARMGQ FSS+ T+ + +V+ D +V N Y FSD
Sbjct: 556 EAIRKWMGRFTS-KNVAKHAARMGQCFSSTYATVTMRPDEVDESFD-DVVH--NEYIFSD 611
Query: 564 GIGKISLSFARQVAQKCGLS-HTPSAFQIRYGGYKGVIAV--DRNSFRKLSLRRSMLKFE 620
GIGKI+ A +VA++ L+ + PSA+QIR+ G+KGVIAV +L LR SM KFE
Sbjct: 612 GIGKITPDLALEVAERLQLTDNPPSAYQIRFAGFKGVIAVWQGHGDGTRLFLRPSMRKFE 671
Query: 621 SRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALD 680
S + +L V W++ P FLNR+II LLS+L V D +F MQ+ L L +L +R+ A +
Sbjct: 672 SNHLVLEVVSWTKFQPGFLNRQIIILLSSLNVPDSIFWQMQETMLSNLNNILSDRDVAFE 731
Query: 681 VLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLI 740
VL + D N ML G+EP EP+L MLL+ QL DL + RI+VPKGR L+
Sbjct: 732 VLTT-SCADDGNTAALMLSAGFEPRTEPHLKAMLLAIRSAQLQDLLEKARIFVPKGRWLM 790
Query: 741 GCFDETGILNYGQVFVRVTM-TREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGD 799
GC DE G+L GQ F+R T+ + K S F D T ++ G V++ KNPCLHPGD
Sbjct: 791 GCLDELGVLEQGQCFIRATVPSLNSYFVKHGSRFSSTDKNTEVILGTVVIAKNPCLHPGD 850
Query: 800 VRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEP 859
VR+LEAV +L VDC++FPQKGERPH NE SG DLDGD++F++WD LIP +
Sbjct: 851 VRILEAVDVPELHH--LVDCLVFPQKGERPHANEASGSDLDGDLYFVTWDEKLIPPGKKS 908
Query: 860 --PMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCL 917
PMDY+ ++ + V+ +I FF+ MI++ LG I AH+VHAD A KC+
Sbjct: 909 WNPMDYSPPEAKQLPRQVSQHDIIDFFLKNMISENLGRICNAHVVHADLSEYGAMDEKCI 968
Query: 918 HLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIM 977
HLA L + AVDF KTG A MP LKPK +PDFM +ED Y S +LG+LYR SI
Sbjct: 969 HLAELAATAVDFPKTGKLAIMPPHLKPKVYPDFMGKEDGQSYKSEKILGRLYR----SIQ 1024
Query: 978 QIRSNAIWSEKIA---EASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTED 1034
+ + + S+++ + YD DLEV G FL A K Y+ +++AL++ Y TE
Sbjct: 1025 EASNGDVVSQEVCTPNDLPYDIDLEVPGASDFLASAWQCKCSYDAQLSALLSQYRVRTEA 1084
Query: 1035 EILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGS----SCK--ENEHPQ 1088
E++TG++ ++ +++ GD+KDR+ + L+ E K F S C+ ++E
Sbjct: 1085 ELVTGHI---TFLVKNSSKKQGDIKDRLKTAYSALRKEFKSTFESIASDQCEIGDDEKNL 1141
Query: 1089 L----ASAWYHVTYSPSYCKERMALL 1110
L ASAWY VTY P + ++ +L
Sbjct: 1142 LYEMKASAWYQVTYHPKWVEKSRGIL 1167
Score = 68 (29.0 bits), Expect = 4.6e-150, Sum P(2) = 4.6e-150
Identities = 24/81 (29%), Positives = 35/81 (43%)
Query: 1055 YGDMKDRILLSAKNLQNEAKEWFGSSCKENEHPQLASAWYHVTYSPSYCK---------- 1104
Y ++ + +++ ++ E G K + ASAWY VTY P + +
Sbjct: 1113 YSALRKEFKSTFESIASDQCE-IGDDEKNLLYEMKASAWYQVTYHPKWVEKSRGILGPDG 1171
Query: 1105 -ERMALLSFPWIVGDILLNIK 1124
E A LSF WI D L IK
Sbjct: 1172 EEIPASLSFAWIPVDYLARIK 1192
>TAIR|locus:2114633 [details] [associations]
symbol:RDR6 "AT3G49500" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0016246 "RNA interference" evidence=IMP] [GO:0016441
"posttranscriptional gene silencing" evidence=TAS] [GO:0030422
"production of siRNA involved in RNA interference" evidence=TAS]
[GO:0048366 "leaf development" evidence=IGI] [GO:0010267
"production of ta-siRNAs involved in RNA interference"
evidence=IMP] [GO:0051607 "defense response to virus" evidence=IMP]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IMP] [GO:0009616 "virus induced gene silencing"
evidence=IMP] [GO:0031047 "gene silencing by RNA" evidence=IMP]
[GO:0048440 "carpel development" evidence=IGI] [GO:0048467
"gynoecium development" evidence=IMP] [GO:0048544 "recognition of
pollen" evidence=IMP] InterPro:IPR007855 Pfam:PF05183 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AC012329 GO:GO:0003723
GO:GO:0048440 GO:GO:0048366 GO:GO:0010492 GO:GO:0010267
GO:GO:0048544 GO:GO:0003887 GO:GO:0009616 EMBL:AL132964
GO:GO:0003968 eggNOG:NOG307726 HOGENOM:HOG000239464 KO:K11699
ProtClustDB:CLSN2682981 PANTHER:PTHR23079 EMBL:AF239718
EMBL:AF268093 IPI:IPI00524423 RefSeq:NP_190519.1 UniGene:At.65263
ProteinModelPortal:Q9SG02 SMR:Q9SG02 MINT:MINT-7014695
STRING:Q9SG02 PaxDb:Q9SG02 PRIDE:Q9SG02 EnsemblPlants:AT3G49500.1
GeneID:824112 KEGG:ath:AT3G49500 TAIR:At3g49500 InParanoid:Q9SG02
OMA:SCAEQGN PhylomeDB:Q9SG02 Genevestigator:Q9SG02 Uniprot:Q9SG02
Length = 1196
Score = 1415 (503.2 bits), Expect = 8.4e-145, P = 8.4e-145
Identities = 366/1095 (33%), Positives = 570/1095 (52%)
Query: 53 VQFTSLDFKSKAQNLSLNDKLVFNSQNLKIS----ETHSDIVPRPVKAQHRVEDGVLHVG 108
V F + +A + + L+ + Q LK+S +S R +++ L +G
Sbjct: 81 VHFAVFESAGRAMDAAGQCNLILDGQPLKVSLGPKNPYSLNQRRRTTVPYKLAGITLEIG 140
Query: 109 VMCKEERLRVLQTFEGVRGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEI 168
+ + V EGV + P +F ++ + + C +K+E+
Sbjct: 141 TLVSRDDFFVSWRAEGVDFLVDPFDNTCKFCFRKSTAFSFKDAVMHAVIN---CDYKLEL 197
Query: 169 LFEDVLETVGFSLDEGATVNG--ILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFD 226
L D+ +TV + T++G ++ +L P+++ + + + P D D D
Sbjct: 198 LVRDI-QTVR----QYKTLHGFVLILQLASSPRVWYRTADDDIYDTVPGDLL-----DDD 247
Query: 227 FFWVRTTDFSVTKSIGCSTSFFWEIKNGLLASDISNIFPFYK-----EDKTDLILEEGEE 281
W+RTTDF+ +IG S+ I + + + +++ E++ E
Sbjct: 248 DPWIRTTDFTQVGAIGRCHSYRVLI-SPRYENKLRTALDYFRMRRVQEERVRWPPRIRNE 306
Query: 282 FCTTSEIVPLVKC-RPGFNLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALM 340
C + C +S E++F +NS++H + +L + +
Sbjct: 307 PCFGEPVSDHFFCIHHKEGISFEIMFLVNSVLHRGVFNQFQLTERFFDLLRNQPKDVNIA 366
Query: 341 VLQKLHKLKSICYDPVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIY 400
L+ L K +D +K + +N K L SH++ D + R ++TP + Y
Sbjct: 367 SLKHLCTYKRPVFDAYKRLKLVQEWIQKNPKL--LGSHEQSED--ISEIRRLVITPTRAY 422
Query: 401 CLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALS---TSIQRGIFSKPY--R 455
CL PE+E SN V++ + A F+RVTF++E + +N LS I + + S + +
Sbjct: 423 CLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAPIVKDLTSSSFSQK 482
Query: 456 TKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNK 515
T ++ R+ +IL DG + + Y FLAFSA+QLR+ S W FA + + D++ WMG F K
Sbjct: 483 TYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTRVSDIKTWMGKF-K 541
Query: 516 IRSVSKCAARMGQLFSSSKQTLVVPVQDVEM-IPDVEVTSDGNTYCFSDGIGKISLSFAR 574
++V+KCAARMG FSS+ T+ V +V+ +PD+E N Y FSDGIG I+ A
Sbjct: 542 DKNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPDIE----RNGYVFSDGIGTITPDLAD 597
Query: 575 QVAQKCGLS--HTPSAFQIRYGGYKGVIA--VDRNSFRKLSLRRSMLKFESRNRMLNVTK 630
+V +K L ++P A+QIRY G+KGV+A ++ +L+LR SM KF S++ +L +
Sbjct: 598 EVMEKLKLDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDSMKKFFSKHTILEICS 657
Query: 631 WSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDS 690
W+ P FLNR+II+LLS LGV DE+F MQ+ L L ++L + + A +VL + +
Sbjct: 658 WTRFQPGFLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTDVAFEVLTA-SCAEQ 716
Query: 691 KNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILN 750
N ML G++P EP+L ML S QL L+ + RI+V GR L+GC DE GIL
Sbjct: 717 GNTAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRWLMGCLDEAGILE 776
Query: 751 YGQVFVRVTMTR-EELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEM 809
+GQ F++V+ E SK S F +VKG V + KNPCLHPGDVR+LEAV
Sbjct: 777 HGQCFIQVSKPSIENCFSKHGSRFKETKTDLEVVKGYVAIAKNPCLHPGDVRILEAVDVP 836
Query: 810 KLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETE--PPMDYTGRR 867
+L Y DC+IFPQKG+RPH NE SG DLDGD++F++WD LIP + P M Y
Sbjct: 837 QLHHM-Y-DCLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKLIPPNRKSYPAMHYDAAE 894
Query: 868 SRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAV 927
+ + V ++I FF + N+ LG I AH+VHADR A +CL LA L + AV
Sbjct: 895 EKSLGRAVNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYGAMDEECLLLAELAATAV 954
Query: 928 DFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSE 987
DF KTG MP LKPK +PDFM +ED Y S +LG+LYR + + + A SE
Sbjct: 955 DFPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRRVKE-VYDEDAEAS-SE 1012
Query: 988 KIAEAS---YDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNR 1044
+ + S YD LE+ GFE + A HK +Y+ ++ L+ Y E+EI+TG++ +
Sbjct: 1013 ESTDPSAIPYDAVLEIPGFEDLIPEAWGHKCLYDGQLIGLLGQYKVQKEEEIVTGHIWSM 1072
Query: 1045 ASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSCKENE----------HPQLASAWY 1094
Y +++ G++K+R+ S +L+ E ++ F + ++E + + ASAWY
Sbjct: 1073 PKYT---SKKQGELKERLKHSYNSLKKEFRKVFEETIPDHENLSEEEKNILYEKKASAWY 1129
Query: 1095 HVTYSPSYCKERMAL 1109
HVTY P + K+ + L
Sbjct: 1130 HVTYHPEWVKKSLEL 1144
>UNIPROTKB|G4NJ50 [details] [associations]
symbol:MGG_02748 "RNA-dependent RNA polymerase 1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR007855 Pfam:PF05183 EMBL:CM001237
GO:GO:0003968 KO:K11699 PANTHER:PTHR23079 RefSeq:XP_003721007.1
EnsemblFungi:MGG_02748T0 GeneID:5050479 KEGG:mgr:MGG_02748
Uniprot:G4NJ50
Length = 1407
Score = 1009 (360.2 bits), Expect = 8.0e-110, Sum P(3) = 8.0e-110
Identities = 258/753 (34%), Positives = 408/753 (54%)
Query: 300 LSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSFV 359
L+ EV +QL + + ++ ++ E ++ LS + A ++L+ + Y+P+
Sbjct: 373 LTWEVRYQLEACISHRMLAEPNITLEFLEKLSEMRPTKARIMLEYVVDRNVKLYNPMQLF 432
Query: 360 KTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKY 419
K + G + P + + L + M+ + VTP +Y P +ET+N V++++ ++
Sbjct: 433 KDE----GASTYW-PDITPEELPQYCTMT-RKVTVTPSTMYLSSPMVETTNRVLRHYNEH 486
Query: 420 ASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEF 479
F+RV F +E LP L G + I+SR+ +L++GI IGD+HY+F
Sbjct: 487 KDRFLRVQFTDE----LPTGRLHAPNDLGADDE-----IFSRVYRVLKNGIHIGDRHYKF 537
Query: 480 LAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVV 539
LAF +SQ+R NS + F +V+ + +R WMG F+ IR+V K AAR+GQ FS+++ V
Sbjct: 538 LAFGSSQMRENSTYFFCDAGDVTCDSIRAWMGRFSHIRNVGKYAARLGQCFSTTRSIDRV 597
Query: 540 PVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGV 599
+ ++ IPD+E N YCF+DG+GKIS +A +++ L + PSAFQ R GG KGV
Sbjct: 598 AMPWIKTIPDIEK----NGYCFTDGVGKISSLWAVVISENLKLDYIPSAFQFRMGGCKGV 653
Query: 600 IAVDRN-SFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFE 658
+ V + +++ +R S LKFE+ + L V + S LNR+ IS+L++LGVK+EVFE
Sbjct: 654 LVVWEDVKGQEIHIRPSQLKFETDHSRLEVIRCSHFSVASLNRQTISVLTSLGVKNEVFE 713
Query: 659 AMQQQQLILLGKMLINREAALDVL-QKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSH 717
+M +QL + + + AA+ +L Q ++ N L +++ G+ + EP++ ML
Sbjct: 714 SMLAEQLAKYNRAMEDATAAMTLLTQYVDENQMTNTLARLVKAGFMESHEPFVCTMLRLW 773
Query: 718 HENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMT---REELES--KDQSF 772
+ LK + R+ V KG ++GC DET L +G F + + R L K
Sbjct: 774 RTWSVKTLKEKARLVVEKGAFVLGCVDETKTL-HGH-FTHIPASPNQRPRLNGNMKLPEI 831
Query: 773 FHRVDDKTS----IVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGER 828
F +V D S ++ G LV +NP LHPGD+RV++A+ +L + D ++F Q G+R
Sbjct: 832 FLQVPDGPSRDYKVITGLCLVGRNPSLHPGDIRVVQAIDVPQL--RHIRDVVVFAQTGDR 889
Query: 829 PHPNECSGGDLDGDIFFISWDNDLIPCETE---PPMDYTGRRSRIMDHDVTLEEIHKFFV 885
P CSGGDLDGD FF+ WD L+P ++ P Y +R +D +VT +++ +FFV
Sbjct: 890 DIPGMCSGGDLDGDDFFVLWDERLLPLPSQRNYKPASYHPPPARELDREVTADDLCQFFV 949
Query: 886 DYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPK 945
YM N +L I+ AHL AD+ A+ KCL LA LHS+AVD+ KTG PA + L P
Sbjct: 950 TYMKNFSLPRIAHAHLAQADKYG--AKDEKCLELAYLHSLAVDYPKTGVPAAIRPRLMPN 1007
Query: 946 EFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEA 1005
EFP FME+ + RY S +LGKLY + KI + D
Sbjct: 1008 EFPHFMEKA-RGRYHSRKILGKLYDQVKPVNFHPAYEMPFDVKILSLYGELSQHGDLGPK 1066
Query: 1006 FLGVAESHKEMYEEEMNALMNYYGASTEDEILT 1038
L A K +Y++ + +M + +TE E+ +
Sbjct: 1067 LLREARKLKTLYDQSIMRIMGQHEIATEFEVFS 1099
Score = 64 (27.6 bits), Expect = 8.0e-110, Sum P(3) = 8.0e-110
Identities = 26/132 (19%), Positives = 62/132 (46%)
Query: 86 HSDIV-P--RPVKAQHRVEDGVLHVGVMCKEERLRVLQTFEGVRGWLLPDRRRLEFWVWP 142
H++I P PV ++ + L VG+M + + V+ T + +R PD +LE
Sbjct: 127 HNEIYSPLNNPVPSEKSIRASSLSVGLMTDKTCMLVMGTIKPLRN---PDDLKLEIKFTK 183
Query: 143 KH-NGEWQKGIQECQSDSSDCC----FKVEILFEDVLETVGFSLDEGATVNGILFKLKYG 197
+ N + + + + S D +KV++ F ++ + + +++E + +L L+
Sbjct: 184 RRINLFFTLALLDTRDPSKDSYRHFRYKVDVQFRNITKLLRVNINEDSCF--LLIPLECP 241
Query: 198 PKIYQKVSGPHV 209
P+ ++++ +
Sbjct: 242 PQFFREIDNKRI 253
Score = 48 (22.0 bits), Expect = 8.0e-110, Sum P(3) = 8.0e-110
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 1107 MALLSFPWIVGDILLNI 1123
M L++FPWI IL+ +
Sbjct: 1188 MPLITFPWIFDQILVQL 1204
Score = 39 (18.8 bits), Expect = 3.4e-107, Sum P(3) = 3.4e-107
Identities = 18/70 (25%), Positives = 36/70 (51%)
Query: 287 EIVPLVKCR----P-GFNLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSME-TALM 340
++ +V CR P GF +E+ LN+ V ++K S+ A+ + GL + T ++
Sbjct: 108 DVQAMVVCRVEIDPRGFRFHNEIYSPLNNPVPSEK-SIRASSLSV-----GLMTDKTCML 161
Query: 341 VLQKLHKLKS 350
V+ + L++
Sbjct: 162 VMGTIKPLRN 171
>POMBASE|SPAC6F12.09 [details] [associations]
symbol:rdp1 "RNA-directed RNA polymerase Rdp1"
species:4896 "Schizosaccharomyces pombe" [GO:0000070 "mitotic
sister chromatid segregation" evidence=IMP] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003968 "RNA-directed RNA polymerase
activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005721 "centromeric heterochromatin" evidence=IDA] [GO:0005724
"nuclear telomeric heterochromatin" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0030702 "chromatin silencing at
centromere" evidence=IMP] [GO:0031047 "gene silencing by RNA"
evidence=IMP] [GO:0031048 "chromatin silencing by small RNA"
evidence=IDA] [GO:0031060 "regulation of histone methylation"
evidence=IMP] [GO:0031380 "nuclear RNA-directed RNA polymerase
complex" evidence=IDA] [GO:0031934 "mating-type region
heterochromatin" evidence=IDA] [GO:0034613 "cellular protein
localization" evidence=IMP] [GO:0045141 "meiotic telomere
clustering" evidence=IMP] [GO:0071276 "cellular response to cadmium
ion" evidence=IMP] [GO:0071585 "detoxification of cadmium ion"
evidence=IMP] InterPro:IPR007855 Pfam:PF05183 PomBase:SPAC6F12.09
GO:GO:0005829 EMBL:CU329670 GO:GO:0034613 GenomeReviews:CU329670_GR
GO:GO:0071276 GO:GO:0071585 GO:GO:0003723 GO:GO:0030702
GO:GO:0000070 GO:GO:0031048 GO:GO:0005721 GO:GO:0031934
GO:GO:0005724 GO:GO:0045141 GO:GO:0031060 GO:GO:0031380
GO:GO:0003968 eggNOG:NOG307726 KO:K11699 PANTHER:PTHR23079
PIR:T11660 RefSeq:NP_593295.1 IntAct:O14227 STRING:O14227
EnsemblFungi:SPAC6F12.09.1 GeneID:2542198 KEGG:spo:SPAC6F12.09
OMA:RISAQNT OrthoDB:EOG44QX81 NextBio:20803268 Uniprot:O14227
Length = 1215
Score = 882 (315.5 bits), Expect = 2.5e-88, P = 2.5e-88
Identities = 279/966 (28%), Positives = 486/966 (50%)
Query: 164 FKVEILFEDVLETVGFSLDEGATVNGILFKLKYGPKIYQKVSGPHVASKFPS--DRYHIC 221
F+++ F ++ VG + ++F+ ++ P I++K S S+ + H+
Sbjct: 233 FRLDFDFHSIIGDVGTDYYDDHI--SLVFRFRFSPLIFRK-SKNATESRVQTFWTASHLW 289
Query: 222 KEDFDF--FWVRTTDFSVTKSIGCSTSFFWEIKNGLLASDISNIFPFYKEDKTDL--ILE 277
+ +D F V T S + + C + +L+ I + + DK D+ +L
Sbjct: 290 RRHYDILPFNVSPTTASPIELLNCHNAPIGRCNVLVLSFSIRD-----ESDKDDIAFLLH 344
Query: 278 EGEEFCTTSEIVPLVKCRPGFNLSHEVLFQLNSLVHNQKVSLVAA---DAELIQ-ILSGL 333
E+F S++ +V F+L + + SL++++++ A A L + +LS +
Sbjct: 345 NLEKFNLKSQLDKVV-----FHLVPDYKHRC-SLINDKEIEEEIAYLLQACLSKNLLSEI 398
Query: 334 SMETALMVLQKLHKLKSICYDPVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCY--- 390
+ L L+KL K ++ + + + T L N + + D + S
Sbjct: 399 DLPIILANLKKLSKERAKKF--LRLILTSKTAL-INPSELDFTKSFVFYDLSSASSIHIK 455
Query: 391 RALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIF 450
+ VTP + + LE N V++NF +A+ FMRV +E + + I+ G
Sbjct: 456 KLYVTPTTLRIVEDSLEAGNRVIRNFKDFANRFMRVQITDEYYKQ--------KIRGG-- 505
Query: 451 SKPYRT-KIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGW 509
S +R K+YSRI +L GI +G++ YEFLAF SQLR + + FAS +++A+ +R W
Sbjct: 506 SDGFRNEKLYSRIQQLLTYGIKVGNQIYEFLAFGNSQLREHGAYFFASGSDLNAKQIREW 565
Query: 510 MGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKIS 569
MG F++I SVSK AARMGQ FS++K+ V D+ + D+ N +CF+DG+G S
Sbjct: 566 MGDFSEINSVSKYAARMGQCFSTTKEINRFCV-DISLQDDIV----RNNHCFTDGVGMAS 620
Query: 570 LSFARQVAQKCGLSHT--PSAFQIRYGGYKGVIAV---DRNSFRKLSL---RRSMLKFES 621
LS R+++ + +H PSAFQ R GGYKGV+++ + + + +L RRS KF+S
Sbjct: 621 LSVIRRLSLEVK-NHDMFPSAFQFRMGGYKGVLSLAPPTKLEYHQGNLVFPRRSQDKFKS 679
Query: 622 RNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDV 681
+ L V K S LN ++I+LL LGV+ VF + + QL + + + +++ ++ +
Sbjct: 680 FHSTLEVIKISRFSNAHLNMQLITLLEGLGVEKTVFLELTRSQLSKMNESINSKQKSILM 739
Query: 682 LQ-KLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLI 740
L+ ++ S I+ + G+ + + +L ++E L +K + ++ VPKG L+
Sbjct: 740 LRDNVDEYHSTLIIADFIQAGFLERDDAFTENLLNLYYEWVLRLIKEKQKVSVPKGAYLL 799
Query: 741 GCFDETGIL--NYGQVFVRVTMTREELESKDQSF--FHRVDDKTSIVKGKVLVTKNPCLH 796
G DETG L +Y + V ++ SF + KT ++ G +V +NP LH
Sbjct: 800 GVADETGTLKGHYDDAVLSVPEIFIQITDTSTSFGSYSTGKLKTRVIVGLCIVARNPSLH 859
Query: 797 PGDVRVLEAVYEMKLEEKDYV-DCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIP- 854
PGDVRV +AV + +E ++ + I+FP G+R P CSGGDLDGD + + WD L+P
Sbjct: 860 PGDVRVCKAV---RCDELMHLKNVIVFPTTGDRSIPAMCSGGDLDGDEYTVIWDQRLLPK 916
Query: 855 CETEPPMDYTGRRSRI--MDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHA---DRDPD 909
PP+ + + I ++ ++ + +FFV+Y+ D+LG IS A A D +P+
Sbjct: 917 IVNYPPLLESSPKKSIDFLEGKPLIDSVKEFFVNYIKYDSLGLISNAWKAWAHDHDNNPE 976
Query: 910 KARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLY 969
+ CL LA +HS AVDFAK+G +M PK +PDFM++ + S +GK++
Sbjct: 977 GIFGNVCLELAEMHSKAVDFAKSGVACKMQAKYHPKRYPDFMQKTKTRSFRSETAVGKIF 1036
Query: 970 RATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEA-FLGVAESHKEMYEEEMNALMNYY 1028
R + A ++ I YD +++ F+ +L VAE K+ Y+ ++ ++M +
Sbjct: 1037 RYAARFQRESGRPATYNP-IMNTVYDPCMKLPRFKTEYLNVAEEVKKHYDNDLRSIMARF 1095
Query: 1029 GASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSCKENEHPQ 1088
STE E+ T + + + N YG +++ + L+ + + + C +
Sbjct: 1096 DISTEYEVYTAFILFKDDLAKTVNE-YG-LREEVSFQFDLLKKKYTQEYLEKCALSNQSA 1153
Query: 1089 LASAWY 1094
S+ Y
Sbjct: 1154 FDSSEY 1159
>WB|WBGene00004510 [details] [associations]
symbol:rrf-3 species:6239 "Caenorhabditis elegans"
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR007855 Pfam:PF05183 EMBL:Z48334 GO:GO:0003968
PANTHER:PTHR23079 EMBL:Z66500 GeneTree:ENSGT00390000016620
RefSeq:NP_495713.2 IntAct:G5EE53 EnsemblMetazoa:F10B5.7
GeneID:174315 KEGG:cel:CELE_F10B5.7 CTD:174315 WormBase:F10B5.7
OMA:HISKAKI Uniprot:G5EE53
Length = 1765
Score = 780 (279.6 bits), Expect = 7.9e-76, Sum P(2) = 7.9e-76
Identities = 236/793 (29%), Positives = 392/793 (49%)
Query: 300 LSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSFV 359
L HE LF L + K A + L Q+L+ + V+ + Y
Sbjct: 599 LVHEPLF-LKLVRRGMKECSQATEETLEQLLNAFDERRQIDVVTAFTTM----YQSRKIQ 653
Query: 360 KTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAK- 418
+L + G + + + L+ + + N +S + +VTP +I + PE+ N VV+ F
Sbjct: 654 YERL-LKGESLQDVGLA---KPLPKNCVSVAKVIVTPSRILLMAPEVMMVNRVVRRFGPD 709
Query: 419 YASDFMRVTFVEEDWSKLPANALS-TSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHY 477
YA +R F +++ +L S +I S IY LT L++GI + D+ Y
Sbjct: 710 YA---LRCVFRDDNLGRLAIRDFSINNIDH--MSNIVTEGIY---LT-LKNGIQVADRVY 760
Query: 478 EFLAFSASQLRNNSVWMFASN-----DEVSA--EDVRGWMGCFNKIRSVSKCAARMGQLF 530
FL +S SQ+R+ +++A EV+ ED+R WMG F SV K +RMGQ F
Sbjct: 761 SFLGWSNSQMRDQGCYLYAPRVNALTGEVTGTVEDIRVWMGDFRDAISVPKMMSRMGQCF 820
Query: 531 SSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQ 590
+ ++ T+ + + PD+E + N YCFSDG G+IS+ A +++ L P+ FQ
Sbjct: 821 TQAQPTVRLERHHWIVEPDIEGGVE-NKYCFSDGCGRISIKLATHISKILQLKEVPACFQ 879
Query: 591 IRYGGYKGVIAVDRN-----SFRKLSLRRSMLKF-----ESRNRMLNVTKWSESMPCFLN 640
+R+ G+KG++ +D + K+ R+S KF E ++ L V K++ P LN
Sbjct: 880 VRFKGFKGILVIDPTIDDIINMPKVIFRKSQQKFGEGGGELQDEYLEVVKYAMPSPVCLN 939
Query: 641 REIISLLSTLGVKDEVFEAMQ---------QQQLILLGKMLINR-EAALDVLQKLNGVDS 690
R I++L + K + +++L L MLIN +AA +++ + N
Sbjct: 940 RPFITILDQVSEKQSASSHRRITNRVHYYLERELCSLSNMLINENQAAEELVNRTNLAID 999
Query: 691 KNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPK--GRLLIGCFDETGI 748
N K G+E +V+P + ML S + + S+ +I++P GR + G DETG+
Sbjct: 1000 WNAASKRA--GFELSVDPLIRDMLFSIYRYNIIHHISKAKIFLPPSLGRSMYGVVDETGL 1057
Query: 749 LNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYE 808
L YGQVF++ + + + ++ + GKVL+TKNPC PGDVRV +AV++
Sbjct: 1058 LQYGQVFIQYSPS-----------IRQTSNRPILKTGKVLITKNPCHVPGDVRVFDAVWQ 1106
Query: 809 MKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRS 868
L VD ++FPQ G RPHP+E +G DLDGD + I WD +++ E M + +
Sbjct: 1107 PALAH--LVDVVVFPQHGPRPHPDEMAGSDLDGDEYSIIWDQEMLLDYNEEAMVFPSSSA 1164
Query: 869 RIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVD 928
D + T +++ +FF+ Y+ D++G +S AHL +AD C +A ++AVD
Sbjct: 1165 AEEDKEPTTDDMVEFFLRYLQQDSIGRMSHAHLAYADLHG--LFHENCHAIALKCAVAVD 1222
Query: 929 FAKTGAPAEMPLALKPKEF-PDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSE 987
F K+G PAE + + E PD+M KP Y S + G+L+R + ++
Sbjct: 1223 FPKSGVPAEPLSSFEQCEMTPDYMMSGGKPMYYSTRLNGQLHRKAR-KVEEVLEEFETRG 1281
Query: 988 KIAEASYD-----HDLEVD-GFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNL 1041
+ E YD D++V G E L + ++ Y + M L++ YG E +++G+
Sbjct: 1282 SVFEREYDKLICPEDVDVFFGNEIKLVQTLTLRDEYVDRMQQLLDEYGIEDEASVVSGHA 1341
Query: 1042 RN--RASYLQRDN 1052
+ R + ++RD+
Sbjct: 1342 ASIKRLAGMERDD 1354
Score = 63 (27.2 bits), Expect = 7.9e-76, Sum P(2) = 7.9e-76
Identities = 16/59 (27%), Positives = 27/59 (45%)
Query: 1068 NLQNEAKEWFGSSCKENEHPQLASAWYHVTY-SPSYCKERMAL-LSFPWIVGDILLNIK 1124
N++N+ K C + H ++ WY V Y P K + S PW+ D L +++
Sbjct: 1389 NIENDGKNT-RLKCTKAMHEKIRQ-WYFVAYVQPKINKAGRCIGQSLPWVAWDALCDLR 1445
>WB|WBGene00004508 [details] [associations]
symbol:rrf-1 species:6239 "Caenorhabditis elegans"
[GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA;ISS;IDA] [GO:0030422 "production of siRNA involved in
RNA interference" evidence=IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017151
"DEAD/H-box RNA helicase binding" evidence=IPI] [GO:0005844
"polysome" evidence=IDA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IDA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IDA] InterPro:IPR007855 Pfam:PF05183
GO:GO:0005634 GO:GO:0048471 GO:GO:0005844 GO:GO:0030422 EMBL:Z78419
GO:GO:0003968 PANTHER:PTHR23079 UniGene:Cel.19452 GeneID:172523
KEGG:cel:CELE_F26A3.8 CTD:172523 GeneTree:ENSGT00390000016620
EMBL:AF159144 RefSeq:NP_001250555.1 ProteinModelPortal:G5ECM1
EnsemblMetazoa:F26A3.8a WormBase:F26A3.8a OMA:QIQIPKE
NextBio:875887 Uniprot:G5ECM1
Length = 1601
Score = 509 (184.2 bits), Expect = 6.4e-65, Sum P(3) = 6.4e-65
Identities = 143/507 (28%), Positives = 254/507 (50%)
Query: 609 KLSLRRSMLKFESR---NRMLNVTKWSESMPCFLNREIISLLSTLGVKDEV--------- 656
K R S +KF+++ + + K+S ++ LN+ I++L + +
Sbjct: 710 KCLFRPSQIKFQAKAISGDQIEMVKFSSAVLVALNKPFINILDQVSEMQSLDCHKRITSR 769
Query: 657 FEAMQQQQLILLGKMLINREAALDVLQKL-NGVDSKNILVKMLLQGYEPNVEPYLSMMLL 715
E + +Q++ K + + L++ +D N+ + G+ + EP+ ++
Sbjct: 770 IEELMDRQILSFAKQMNEETFCRNKLKEFPRRIDIDNLRT---MWGFTLSSEPFFRSLIK 826
Query: 716 SHHENQLSDLKSRCRIYVPK--GRLLIGCFDETGILNYGQVFVRVTMT-REELESKDQSF 772
+ + ++ + +I +P GR ++G DETG L YGQ+FV+ T +++L +D +
Sbjct: 827 ASIKFSITKQLCKEQIQIPSELGRSMLGVVDETGRLQYGQIFVQYTKNYKKKLPPRDSN- 885
Query: 773 FHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPN 832
++V + IV G VL+TKNPC+ PGDVR+ EAV +L D ++FPQ G RPHP+
Sbjct: 886 -NKVHG-SEIVTGTVLLTKNPCIVPGDVRIFEAVDIPELHHM--CDVVVFPQHGPRPHPD 941
Query: 833 ECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRI-MDHDVTLEEIHKFFVDYMIND 891
E +G DLDGD + + WD +L+ E P D+ + ++ D + + +F+V Y+ D
Sbjct: 942 EMAGSDLDGDEYSVIWDQELLLERNEEPFDFAVEKIKVPYDREKLDVLMREFYVTYLKLD 1001
Query: 892 TLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALK-------- 943
++G IS +HL ++D+ +R C+ LA + AVDF K+G P + PL K
Sbjct: 1002 SVGQISNSHLHNSDQYGLNSRV--CMDLAKKNCQAVDFTKSGQPPD-PLETKWRADPVTF 1058
Query: 944 -------PKEFPDF-MEREDKPRYISFGVLGKLYRA--TLDSIMQIRSNAIWSEKIAEAS 993
P+ PDF M E P Y+S + GKL+R +D++++I ++
Sbjct: 1059 EVIPPENPERIPDFHMGNERSPMYVSPRLCGKLFREFQAIDNVIKISEER---DEQYNIE 1115
Query: 994 YDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTG---NLRNRASYLQR 1050
D + V GFE ++ A+ Y ++ ++M YG +E EI++G +RNR S +
Sbjct: 1116 LDETIFVTGFERYMESAQKQLSSYNGQLRSIMENYGIRSEGEIMSGCIVEMRNRISDKDQ 1175
Query: 1051 DNRRYGDMKDRILLSAKNLQNEAKEWF 1077
D+ + + I +L + +E F
Sbjct: 1176 DDMSFYNTNQMIETKMTSLVCKFRETF 1202
Score = 225 (84.3 bits), Expect = 6.4e-65, Sum P(3) = 6.4e-65
Identities = 74/248 (29%), Positives = 123/248 (49%)
Query: 391 RALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIF 450
+ + TP ++ + PE N V++ F K + +RVTF +++ K+ +N + R
Sbjct: 466 KVIFTPTRVIYIAPETIMGNRVLRKFDKDGTRVLRVTFRDDNNKKMRSNVTGKLLDRT-- 523
Query: 451 SKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMF--------------- 495
+ Y L+ G+ I ++ Y FL S SQ+R+N +
Sbjct: 524 ANKY-----------LEHGVRIANREYGFLGCSNSQMRDNGAYFMMRFTDKQLDRFYKCN 572
Query: 496 --ASNDEVSA--EDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVE 551
ASN ++VR +G F++I +V K AR+GQ F+ S+ T V +D + +
Sbjct: 573 PTASNINFKPKIDEVRFQLGRFSEIENVPKLMARLGQCFTQSRLTGVGLGRD-DYCSTYD 631
Query: 552 VT----SDGNTYCFSDGIGKISLSFARQVAQKCGLSHT-PSAFQIRYGGYKGVIAVDR-- 604
+T ++G+ Y FSDG+G +S FA++V+Q PS FQIR+ G KGVIA++
Sbjct: 632 LTGGRATNGSEYTFSDGVGMMSYQFAQEVSQAMQFGKAVPSCFQIRFRGNKGVIAIEPFL 691
Query: 605 NSFRKLSL 612
+ RK +L
Sbjct: 692 DEIRKWAL 699
Score = 73 (30.8 bits), Expect = 6.4e-65, Sum P(3) = 6.4e-65
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 1083 ENEHPQLASAWYHVTYSPSYCKERMALLSFPWIVGDILLNIKSVN 1127
+ E + A AWY Y + + LSF WI D++ +K N
Sbjct: 1234 DQEVRKKAVAWYRACYECAQSTREVRKLSFAWIAYDVIAKVKETN 1278
Score = 43 (20.2 bits), Expect = 6.7e-46, Sum P(3) = 6.7e-46
Identities = 15/59 (25%), Positives = 24/59 (40%)
Query: 122 FEGVRGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFS 180
F G +G + + E W NG + +C S F+ + + D +E V FS
Sbjct: 678 FRGNKGVIAIEPFLDEIRKWALVNGVTSMKMAKCLFRPSQIKFQAKAISGDQIEMVKFS 736
>WB|WBGene00004509 [details] [associations]
symbol:rrf-2 species:6239 "Caenorhabditis elegans"
[GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA;ISS] InterPro:IPR007855 Pfam:PF05183 GO:GO:0003968
PANTHER:PTHR23079 GeneTree:ENSGT00390000016620 EMBL:AL132848
EMBL:Z81571 RefSeq:NP_493057.1 ProteinModelPortal:G5EFA8
EnsemblMetazoa:M01G12.12 GeneID:173092 KEGG:cel:CELE_M01G12.12
CTD:173092 WormBase:M01G12.12 NextBio:878243 Uniprot:G5EFA8
Length = 1579
Score = 454 (164.9 bits), Expect = 2.1e-61, Sum P(3) = 2.1e-61
Identities = 142/494 (28%), Positives = 244/494 (49%)
Query: 600 IAVDRNSFRKLSLRRSMLKFESRNRM---LNVTKWSESMPCFLNREIISLLSTLGVKDEV 656
I++ +N K R S +KFE + + + + K+S + LN+ +I++L + +
Sbjct: 684 ISLSKNI--KCVFRPSQIKFEGKQILGDQVEMVKYSSPVLVALNKPLINILDQVSEMQSL 741
Query: 657 ---------FEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKML--LQGYEPN 705
E + Q + K + + + L++ + I + L + G+ +
Sbjct: 742 ECHRRITSRIEELMDLQTLSFAKQMTDEACFRNKLKEF----PRRIDIDYLRTIWGFTLS 797
Query: 706 VEPYLSMMLLSHHENQLSDLKSRCRIYVPK--GRLLIGCFDETGILNYGQVFVRVTMT-R 762
EP+ ++ + + ++ + +I +P GR ++G DETGIL YGQVFV+ T R
Sbjct: 798 NEPFFRSLVKASIKFAITKQLFKEQIQIPSELGRSMLGVVDETGILQYGQVFVQYTKNHR 857
Query: 763 EELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIF 822
L +D + +V + IV G VL+TKNP + PGDVR+ EAV +L D ++F
Sbjct: 858 NILPPRDSN--RKVLG-SEIVTGTVLLTKNPGIVPGDVRIFEAVDIPELHH--LCDVVVF 912
Query: 823 PQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHK 882
PQ G RPHP+E +G DLDGD + + WD L+ E D+ ++ ++++ +
Sbjct: 913 PQHGPRPHPDEMAGSDLDGDEYSVIWDQKLLLERNEEAFDFAVEKNLQTYEWEDIDDLMR 972
Query: 883 -FFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPA-EMPL 940
+V+Y+ D +G I+ +HL ++D+ +R C++LA AVDF+K+G P E+
Sbjct: 973 DVYVEYLKKDLVGLIANSHLHNSDQYGLTSRV--CMNLAKKSCQAVDFSKSGKPPDELQT 1030
Query: 941 ALK---------PKE----FPDFMEREDK-PRYISFGVLGKLYRAT--LDSIMQIRSNAI 984
K P E PD+ D P+Y+S + GKL+R +D+ M+I
Sbjct: 1031 TWKTDDATGEMIPPERAERVPDYHVGSDHMPKYVSPRLCGKLFREFQGIDNAMKISEEKS 1090
Query: 985 WSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTG---NL 1041
KI D + VDGFE ++ A+ Y ++ + M+ YG +E EI++G +
Sbjct: 1091 EQYKI---EVDESIRVDGFEEYMEDAKKQLASYNGQLKSTMDTYGIQSEGEIMSGCIIEM 1147
Query: 1042 RNRASYLQRDNRRY 1055
RNR S +D+ +
Sbjct: 1148 RNRISDSDQDDMSF 1161
Score = 251 (93.4 bits), Expect = 2.1e-61, Sum P(3) = 2.1e-61
Identities = 72/240 (30%), Positives = 121/240 (50%)
Query: 382 IDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANAL 441
I+ + + TP ++ PE+ N V++NF + + +RVTF +++ K+ ANA
Sbjct: 443 IEEGYQRVRKVIFTPTRVIYTPPEMIMGNRVLRNFDRDGTHVLRVTFRDDNNRKMRANAT 502
Query: 442 STSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDE- 500
+ I K Y L+ GIV+ ++ + FL S+SQ+R+N + N +
Sbjct: 503 GELLD--ICVKKY-----------LEHGIVVANRDFGFLGCSSSQMRDNGAYFMVKNTDN 549
Query: 501 -------------VSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMI 547
+ + VR +G F +I ++ K AR+GQ F+ S+ T V D +
Sbjct: 550 RHKNACKMNSKFKPNIDSVRNQLGNFLQIENIPKLMARLGQCFTQSRLTGVSLGPDNYCL 609
Query: 548 P-DVEV--TSDGNTYCFSDGIGKISLSFARQVAQKCGLSHT-PSAFQIRYGGYKGVIAVD 603
D+ +S+G+ Y FSDG+G +S FA++V++ + PS FQ RY G KGV+A+D
Sbjct: 610 THDLSGGRSSNGSEYTFSDGVGMMSYEFAQEVSRLMSFGRSVPSCFQFRYRGMKGVLAID 669
Score = 71 (30.1 bits), Expect = 2.1e-61, Sum P(3) = 2.1e-61
Identities = 19/57 (33%), Positives = 27/57 (47%)
Query: 1071 NEAKEWFGSSCKENEHPQL---ASAWYHVTYSPSYCKERMALLSFPWIVGDILLNIK 1124
NE+ +F C EN + ++ A AWY Y + LSF WI D++ IK
Sbjct: 1202 NESN-FFNFRC-ENPNEEIRKKAVAWYRACYECAKSTREPRKLSFAWIAYDVIAKIK 1256
>ASPGD|ASPL0000040001 [details] [associations]
symbol:rrpC species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003968 "RNA-directed RNA
polymerase activity" evidence=IEA] InterPro:IPR007855 Pfam:PF05183
EMBL:BN001306 GO:GO:0003968 eggNOG:NOG307726 KO:K11699
PANTHER:PTHR23079 EMBL:AACD01000048 RefSeq:XP_660321.1
EnsemblFungi:CADANIAT00010398 GeneID:2874470 KEGG:ani:AN2717.2
HOGENOM:HOG000166092 OMA:KHKARIP OrthoDB:EOG4VMJPG Uniprot:Q5B9R3
Length = 1203
Score = 646 (232.5 bits), Expect = 2.7e-59, Sum P(2) = 2.7e-59
Identities = 218/710 (30%), Positives = 350/710 (49%)
Query: 295 RPGFNLSHEVLFQLNSLVHNQKVS---LVAADAELIQILSGLSME----TALMVLQKLHK 347
R G L +LFQL +LV+N + ++ +L I ++ ++ +++L
Sbjct: 282 RAG-TLPFGILFQLQALVYNGYLPPNIVLRLTRKLASITKTRKVQGRRPISVNSMKRLFN 340
Query: 348 L---KSICYDPVSF-VKTQLHVLGRNCKSIP--LSSHKRLIDH--NVMSCYRALVTPMKI 399
L S DP F +K L V+ N K + S + L ++ +R +VTP +I
Sbjct: 341 LIDWPSPFGDPEEFSIKRLLEVITGNDKDLGEGASEAEALFQPAPHLAHIHRVVVTPSRI 400
Query: 400 YCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIY 459
GPE E N +++ F + F+RV F +E+ + N I + I+
Sbjct: 401 TLHGPETEPLNRILRRFPNHHEYFIRVQFCDENGEDIYFNP---RINNSL--------IF 449
Query: 460 SRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFAS--NDEVSAED---VRGWMGCFN 514
+R + +G I + Y FL FS S LR+ S W A +D+ S + + +G F+
Sbjct: 450 ARFKNVFANGFQIAGRTYTFLGFSHSSLRSRSAWFSAPFIDDDGSLQSYFTIIKAIGRFS 509
Query: 515 KIRSVSKCAARMGQLFSSSKQTLVVPVQDVEM--IPDVEVTSDGNTYCFSDGIGKISLSF 572
+I S ++CAAR+GQ FS + + + + + IPDV+V G FSDG+G IS
Sbjct: 510 EITSPARCAARIGQAFSETPFAVNLKENGIRVLRIPDVQV--GGRV--FSDGVGTIS--- 562
Query: 573 ARQVAQKCGL----SHTPSAFQIRYGGYKGVIAVD-RNSFRKLSLRRSMLKFESRNRMLN 627
A+ V G+ + P+ FQIR GG KG++++D R K+ +R SM KF++ +++ N
Sbjct: 563 AKAVDIIHGVLPPRNGAPTCFQIRLGGAKGMLSLDPRLRGSKICIRPSMTKFQTDDQV-N 621
Query: 628 VT---KWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQK 684
V S+ +P FLNR++I +L +GV E F +Q+ ++ L K + ++
Sbjct: 622 VEICGSGSKPIPLFLNRQVIKILEDMGVDREWFMTLQELRIEQLRKATATTKNTATFVKG 681
Query: 685 LNGVDSKNILVKMLLQGYEPNVE----PYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLI 740
+ D L ++ L + ++ P+L ++ + +L LK + RI V KG L
Sbjct: 682 QSVADCVK-LYRLFLLFHNLKLDYKKIPFLRAVVEAMVLRELRLLKHKARIPVHKGITLY 740
Query: 741 GCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDV 800
G DETG LN +VFV + L + Q+ ++LVT++P LH GD+
Sbjct: 741 GVMDETGFLNENEVFVTY-QAMDRLAAPPQNC-------------RLLVTRSPALHNGDI 786
Query: 801 RVLEAVYEMKLEE-KDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEP 859
+ V K + +CI+F QKG R P++ SGGDLDGD++ I WD P
Sbjct: 787 QYPYNVVPPKGHPLQQQRNCIVFSQKGTRDLPSQLSGGDLDGDLYNIIWDPAAAPKRVFT 846
Query: 860 PMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHL 919
P +Y + V E++ FFV++M +D LG I+T H++ AD+ S C L
Sbjct: 847 PANYPRNPPLDIKRVVEREDMANFFVEFMQSDRLGVIATKHMILADQMELGTSHSDCKKL 906
Query: 920 ATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLY 969
A LHS AVDF+KTG P + KE P F+ R +P +++ G L K++
Sbjct: 907 AQLHSTAVDFSKTGIPVRL------KEMP-FVNRS-RPDFLAPGPLAKIH 948
Score = 44 (20.5 bits), Expect = 2.7e-59, Sum P(2) = 2.7e-59
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 959 YISFGVLGKLYRATLDSIMQIRSNAIWSEKI 989
Y S +LGKLYRA I + IW++ I
Sbjct: 977 YRSEKILGKLYRA-------INEHEIWTKDI 1000
>WB|WBGene00001214 [details] [associations]
symbol:ego-1 species:6239 "Caenorhabditis elegans"
[GO:0007186 "G-protein coupled receptor signaling pathway"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0000910 "cytokinesis" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0007276 "gamete generation" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0007283 "spermatogenesis"
evidence=IMP] [GO:0016246 "RNA interference" evidence=IMP]
[GO:0007281 "germ cell development" evidence=IGI] [GO:0031081
"nuclear pore distribution" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] [GO:0043186 "P granule" evidence=IDA] [GO:0000794
"condensed nuclear chromosome" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0070090 "metaphase plate"
evidence=IDA] InterPro:IPR007855 Pfam:PF05183 GO:GO:0009792
GO:GO:0040010 GO:GO:0002119 GO:GO:0016246 GO:GO:0010171
GO:GO:0048477 GO:GO:0007283 GO:GO:0000910 GO:GO:0007281
GO:GO:0000794 GO:GO:0043186 GO:GO:0031081 EMBL:Z78419 GO:GO:0003968
PANTHER:PTHR23079 BRENDA:2.7.7.48 GeneTree:ENSGT00390000016620
EMBL:AF159143 PIR:T21381 RefSeq:NP_492132.1 UniGene:Cel.23243
ProteinModelPortal:G5EBQ3 IntAct:G5EBQ3 EnsemblMetazoa:F26A3.3
GeneID:172524 KEGG:cel:CELE_F26A3.3 CTD:172524 WormBase:F26A3.3
OMA:LRSMMEN NextBio:875891 GO:GO:0070090 Uniprot:G5EBQ3
Length = 1632
Score = 497 (180.0 bits), Expect = 3.4e-44, Sum P(2) = 3.4e-44
Identities = 140/502 (27%), Positives = 250/502 (49%)
Query: 613 RRSMLKFESRNR---MLNVTKWSESMPCFLNREIISLLSTLGVKDEV---------FEAM 660
R S +KF S+ + + K+S +P LN+ I++L + + E +
Sbjct: 746 RPSQIKFISKRHPRDQVEIVKYSSPVPVALNKPFINILDQVSEMQSLECHRRVTNRIEEL 805
Query: 661 QQQQLILLGKMLINREAALDVLQKL-NGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHE 719
+Q++ + +++ + L++L VD + G+ + EP+ ++ + +
Sbjct: 806 LDRQMLSFAQQMVDETFCRNRLKELPRRVDIDYLRTTW---GFTLSSEPFFRSLIKASIK 862
Query: 720 NQLSDLKSRCRIYVP--KGRLLIGCFDETGILNYGQVFVRVTMTRE-ELESKDQSFFHRV 776
++ + +I +P GR ++G DETG L YGQ+FV+ T +L K+ +
Sbjct: 863 FSITRQLRKEQIPIPCDLGRSMLGVVDETGRLQYGQIFVQYTKNLALKLPPKNAA----- 917
Query: 777 DDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSG 836
++ G VL+TKNPC+ GDVR+ EAV +L D ++FPQ G RPHP+E +G
Sbjct: 918 ---RQVLTGTVLLTKNPCIVAGDVRIFEAVDIPELHHM--CDVVVFPQHGPRPHPDEMAG 972
Query: 837 GDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEI-HKFFVDYMINDTLGA 895
DLDGD + I WD L+ + E P D+T + + + ++++ +F+V Y+ D++G
Sbjct: 973 SDLDGDEYSIIWDQQLLLDKNEDPYDFTSEKQKASFKEDEIDDLMREFYVKYLKLDSVGQ 1032
Query: 896 ISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAP--------------AEMPLA 941
IS +HL ++D+ AR C+ LA + AVDF K+G P EM
Sbjct: 1033 ISNSHLHNSDQYGLNARV--CMDLAKKNCQAVDFTKSGQPPDELERKWRKDEETGEMIPP 1090
Query: 942 LKPKEFPDF-MEREDKPRYISFGVLGKLYRA--TLDSIMQIRSNAIWSEKIAEASYDHDL 998
+ + PD+ M + P Y+S + GKL+R +D +++I E++ E S D +
Sbjct: 1091 ERAERVPDYHMGNDHTPMYVSPRLCGKLFREFKAIDDVLKISEER--DEQV-EISIDETI 1147
Query: 999 EVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTG---NLRNRASYLQRDNRRY 1055
++DG+ ++ A++ Y ++ ++M YG TE E+ +G ++RNR S +D+ +
Sbjct: 1148 KIDGYTEYMASAKNDLARYNAQLRSMMENYGIKTEGEVFSGCIVDMRNRISDKDQDDMSF 1207
Query: 1056 GDMKDRILLSAKNLQNEAKEWF 1077
+ I NL + +E F
Sbjct: 1208 FNTNQMIETKLTNLFKKYREIF 1229
Score = 194 (73.4 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 83/369 (22%), Positives = 166/369 (44%)
Query: 391 RALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIF 450
+ + TP ++ + PE N V++ + + +R+TF ++D K+ N ST +++ +
Sbjct: 493 KIIFTPTRVIYVAPETLMGNRVLRRYDHDGTRVLRITFRDDDNQKMRTNKTSTMLEKTV- 551
Query: 451 SKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWM---FASNDEVSAEDV- 506
Y L++GI + +++ +L S SQ+R+N + ++S+ E +
Sbjct: 552 -NQY-----------LKNGITVAGRNFGYLGSSNSQMRDNGAYFMEKYSSSQCREYERIY 599
Query: 507 ---------------RGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVE 551
R +G F I ++ K AR+GQ F+ S+ + V ++ + +
Sbjct: 600 QIKPPITFNPKIQAARKNLGRFETIDNIPKMMARLGQCFTQSRLS-GVNLERCTYMTTYD 658
Query: 552 VTSD----GNTYCFSDGIGKISLSFARQVAQKCGLSH-TPSAFQIRYGGYKGVIAVDR-- 604
+T G+ Y FSDG+G +S FA+ V++ PS FQ R+ G KGVI+++
Sbjct: 659 LTGGKNLKGDEYTFSDGVGMMSYRFAQMVSEVMDFGKGVPSCFQFRFRGMKGVISIEPLL 718
Query: 605 NSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQ 664
++ R+ S+ ++ K S + + WS + C I +S +D+V
Sbjct: 719 DNLRQWSISYNISK-PSDD-----SSWS--LNCMFRPSQIKFISKRHPRDQVEIVKYSSP 770
Query: 665 L-ILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMML-LSHHENQL 722
+ + L K IN LD + ++ ++ + + + + + + M+ + N+L
Sbjct: 771 VPVALNKPFIN---ILDQVSEMQSLECHRRVTNRIEELLDRQMLSFAQQMVDETFCRNRL 827
Query: 723 SDLKSRCRI 731
+L R I
Sbjct: 828 KELPRRVDI 836
Score = 63 (27.2 bits), Expect = 3.4e-44, Sum P(2) = 3.4e-44
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 1090 ASAWYHVTYSPSYCKERMALLSFPWIVGDILLNIKSVNS 1128
A AWY Y + LSF W+ D++ +K S
Sbjct: 1269 AVAWYRACYEEARITRENKKLSFAWLAYDVIAKVKQDKS 1307
>DICTYBASE|DDB_G0291249 [details] [associations]
symbol:rrpB "RNA-directed RNA polymerase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR007855 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF05183 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0291249
GO:GO:0005524 EMBL:AAFI02000177 GenomeReviews:CM000155_GR
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG1111 GO:GO:0003968 KO:K11699
PANTHER:PTHR23079 RefSeq:XP_635263.1 ProteinModelPortal:Q54EH7
EnsemblProtists:DDB0220017 GeneID:8628208 KEGG:ddi:DDB_G0291249
InParanoid:Q54EH7 OMA:NINERTN ProtClustDB:CLSZ2429575
Uniprot:Q54EH7
Length = 2403
Score = 496 (179.7 bits), Expect = 2.4e-40, Sum P(3) = 2.4e-40
Identities = 175/644 (27%), Positives = 304/644 (47%)
Query: 498 NDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGN 557
++++ V+ W G + +V K +G +FS++ T+ +P + I D+ N
Sbjct: 1301 SNQIGTHTVKIWSG-IEHVDNVRKFFRCIGLMFSTTIPTVTLPQNRIYRIQDIT----RN 1355
Query: 558 TYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSFRK--LSLRRS 615
T+ F++G G+I A+ + + + A+Q+R GG KG++ V+ + + +R S
Sbjct: 1356 THVFTEGCGEIGPELAKHLNENYNFRPSTCAYQVRIGGNKGMLVVNNQAPDPSGIYIRPS 1415
Query: 616 MLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINR 675
M+KF N ++ + C ++ L+ + Q L +N+
Sbjct: 1416 MVKF---NPIVCGDEHRTLEICSVSTTSRCKLNRQVISLLSTLGTQDNVFFALQDHYLNQ 1472
Query: 676 EAALDVLQKLNGVDSKNILVKM---LLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIY 732
A ++ N SK +V+ + +G E +PY+ +L+S ++ ++ ++ +C I
Sbjct: 1473 VA--QIVNDTNA--SKQAIVEFFPDITEG-ELYQDPYIRRILISLYKLKMERIQQKCHIE 1527
Query: 733 VPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKN 792
+ R+L+G D T L VFV++ EE E D R +K +++G V+V KN
Sbjct: 1528 IKDSRMLLGVCDPTNSLPPNTVFVQL---EEEDEDDDDG---RKYEK--VIEGLVMVIKN 1579
Query: 793 PCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDL 852
PC HPGDVR L+AV ++L V ++F KG+ P+ E SG DLDGD +F +D L
Sbjct: 1580 PCTHPGDVRYLKAVDNLRLRHLRNV--LVFSTKGDVPNFKEISGSDLDGDRYFFCYDKSL 1637
Query: 853 IPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFV---DYMIN---DTLGAISTAHLVHADR 906
I ++ Y G + + ++D + F Y N LG + +HL A
Sbjct: 1638 IGNRSKSETAYLGDET-VSNNDKKANVFNDPFALSSMYSTNVERQELGKMYNSHL--AIS 1694
Query: 907 DPDKARSSKCLHLATLHSMAVDFAKTGA----PAEMPLALKPKEFPDFMEREDKPR--YI 960
D A + ++ +D+ KTG P E + LK K +P +M+RE+ R Y
Sbjct: 1695 DLFGANHEFSIQISKECFKEIDYPKTGIHGTIPKEANVWLKTKGYPHYMQRENSTRVYYQ 1754
Query: 961 SFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEE 1020
S ++GK+Y +D ++ I + + S D VD +E +L A+ Y+ +
Sbjct: 1755 SKTIMGKMYDQ-IDQLVYI------GDFLPNISLDKSNLVDDYEIYLNSAKILYSQYKLQ 1807
Query: 1021 MNALMNYYGASTEDEILTGNLRNR--ASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFG 1078
+++L+ +Y A +E+ I+ G L + + +D + G+MK+ + + +NE + FG
Sbjct: 1808 VHSLLRHYSAESEESIMIGFLDQGFISDKVSKDIK--GEMKNDYIKIQQTFENEFLKEFG 1865
Query: 1079 SSCKEN---EH----PQLASAWYHVTYSPSYCKERMALLSFPWI 1115
KEN H + SAWYHV YS K+ AL F WI
Sbjct: 1866 EQHKENCLLIHRVNIEKKVSAWYHVAYSD--LKDDRAL-GFYWI 1906
Score = 350 (128.3 bits), Expect = 4.3e-24, Sum P(3) = 4.3e-24
Identities = 115/387 (29%), Positives = 191/387 (49%)
Query: 394 VTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSK- 452
+TP + + P L+ S V+ F +S+F+ V V E L +G+ +K
Sbjct: 1213 ITPSRTIFIQPTLQRSCRAVRKFG--SSNFIMVKIVNESLEPL----------QGVNNKH 1260
Query: 453 PYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGC 512
P +RI IL+ GI++G K Y + S SQLR S W F SN ++ V+ W G
Sbjct: 1261 PLHE---NRIKPILEGGILVGGKIYSYAGNSNSQLREYSSW-FVSN-QIGTHTVKIWSG- 1314
Query: 513 FNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSF 572
+ +V K +G +FS++ T+ +P + I D+ NT+ F++G G+I
Sbjct: 1315 IEHVDNVRKFFRCIGLMFSTTIPTVTLPQNRIYRIQDIT----RNTHVFTEGCGEIGPEL 1370
Query: 573 ARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSFRK--LSLRRSMLKFE-----SRNRM 625
A+ + + + A+Q+R GG KG++ V+ + + +R SM+KF +R
Sbjct: 1371 AKHLNENYNFRPSTCAYQVRIGGNKGMLVVNNQAPDPSGIYIRPSMVKFNPIVCGDEHRT 1430
Query: 626 LNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKL 685
L + S + C LNR++ISLLSTLG +D VF A+Q L N+ A ++
Sbjct: 1431 LEICSVSTTSRCKLNRQVISLLSTLGTQDNVFFALQDHYL--------NQVA--QIVNDT 1480
Query: 686 NGVDSKNILVKM---LLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGC 742
N SK +V+ + +G E +PY+ +L+S ++ ++ ++ +C I + R+L+G
Sbjct: 1481 NA--SKQAIVEFFPDITEG-ELYQDPYIRRILISLYKLKMERIQQKCHIEIKDSRMLLGV 1537
Query: 743 FDETGILNYGQVFVRVTMTREELESKD 769
D T L VFV++ EE E D
Sbjct: 1538 CDPTNSLPPNTVFVQL---EEEDEDDD 1561
Score = 44 (20.5 bits), Expect = 2.4e-40, Sum P(3) = 2.4e-40
Identities = 17/50 (34%), Positives = 23/50 (46%)
Query: 455 RTKIYSRILTILQDGIVIGDKHYEFL-AFSASQLRNNSVWMFASNDEVSA 503
R+K S+ + I D DK + L S+ L NNS+ SN E A
Sbjct: 743 RSKNESKFIIIYND-----DKDLKILNILSSENLLNNSINQILSNRERQA 787
Score = 40 (19.1 bits), Expect = 2.4e-40, Sum P(3) = 2.4e-40
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 58 LDFKSKAQN----LSLNDKLVFNSQNLKISETHSDI 89
+ FK+ Q S+ + LV NS+ L+I +SD+
Sbjct: 485 VSFKTSGQESLIETSICEFLVSNSKELQIFLNYSDV 520
Score = 39 (18.8 bits), Expect = 8.1e-40, Sum P(3) = 8.1e-40
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 244 STSFFWEIKNGLLASDISNIFPFYKEDKTDLIL 276
S S + + N +I+N+ F K+++ + I+
Sbjct: 1130 SQSSYGRVLNQDFIVEINNLLAFGKQEEAEFII 1162
>DICTYBASE|DDB_G0289659 [details] [associations]
symbol:rrpA "RNA-directed RNA polymerase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR007855 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF05183 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0289659
GO:GO:0005524 GenomeReviews:CM000154_GR GO:GO:0003676
EMBL:AAFI02000148 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG1111 GO:GO:0003968 PANTHER:PTHR23079
ProtClustDB:CLSZ2429575 RefSeq:XP_636093.1
ProteinModelPortal:Q54H25 EnsemblProtists:DDB0191515 GeneID:8627305
KEGG:ddi:DDB_G0289659 InParanoid:Q54H25 Uniprot:Q54H25
Length = 2417
Score = 493 (178.6 bits), Expect = 1.2e-38, Sum P(4) = 1.2e-38
Identities = 176/648 (27%), Positives = 308/648 (47%)
Query: 495 FASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTS 554
F SN ++ V+ W G + +V K +G +FS++ T+ +P + I D+
Sbjct: 1284 FVSN-QIGTHTVKIWSG-IEHVDNVRKFFRCIGLMFSTTIPTVTLPQNRIYRIQDIT--- 1338
Query: 555 DGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSFRK--LSL 612
NT+ F++G G+I A+ + + + A+Q+R GG KGV+ V+ + + +
Sbjct: 1339 -RNTHEFTEGCGEIGPELAKHLNENYNFRPSTCAYQVRIGGNKGVLVVNNQAPDPSGIYI 1397
Query: 613 RRSMLKFESRNRMLNVTKWSESMP-CFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKM 671
R SM+KF ++ ++ C ++ L+ + Q L
Sbjct: 1398 RPSMVKFNP----IDCGDEHRTLEICSVSTTSRCKLNRQVISLLSTLGTQDNVFFALQDH 1453
Query: 672 LINREAALDVLQKLNGVDSKNILVKM---LLQGYEPNVEPYLSMMLLSHHENQLSDLKSR 728
+N+ A ++ N SK +V+ + +G E +PY+ +L+S ++ ++ ++ +
Sbjct: 1454 YLNQVA--QIVNDTNA--SKQAIVEFFPDITEG-ELYQDPYIRRILISLYKLKMERIQQK 1508
Query: 729 CRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVL 788
C I + R+L+G D T L VFV++ EE E +D R +K +++G V+
Sbjct: 1509 CHIEIKDSRMLLGVCDPTNSLPPNTVFVQL----EE-EDEDDDDDGRKYEK--VIEGLVM 1561
Query: 789 VTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISW 848
V KNPC HPGDVR L+AV ++L V ++F KG+ P+ E SG DLDGD +F +
Sbjct: 1562 VIKNPCTHPGDVRYLKAVDNIRLRHLRNV--LVFSTKGDVPNFKEISGSDLDGDRYFFCY 1619
Query: 849 DNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFV---DYMIN---DTLGAISTAHLV 902
D LI +E Y + + ++D + F Y N LG + +HL
Sbjct: 1620 DKSLIGNRSESETAYLVVET-VSNNDKKANVFNDPFALSSMYSTNAERQELGKLYHSHLA 1678
Query: 903 HADRDPDKARSSKCLHLATLHSMAVDFAKTGA----PAEMPLALKPKEFPDFMEREDKPR 958
+D+ + S + ++ +D+ KTG P E+ + L+ +P +M+RE+ R
Sbjct: 1679 ISDQYGANHKYS--IQISKECFKEIDYPKTGIHGTIPKEVNIRLQTVGYPHYMQRENSTR 1736
Query: 959 --YISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEM 1016
Y S ++GK+Y +D ++ I + + S D VDG+E +L A+
Sbjct: 1737 VYYQSKKIMGKMYDQ-IDQLVYI------GDFLPNISLDKSNLVDGYEIYLNSAKILYSQ 1789
Query: 1017 YEEEMNALMNYYGASTEDEILTGNLRNR--ASYLQRDNRRYGDMKDRILLSAKNLQNEAK 1074
Y+ ++++L+ +Y A +E+ I+ G L + + +D + G+MK+ + + +NE
Sbjct: 1790 YKLQVHSLLRHYSAESEESIMIGFLDQGFISDKVSKDIK--GEMKNDYIKIQQTFENEFL 1847
Query: 1075 EWFGSSCKEN---EH----PQLASAWYHVTYSPSYCKERMALLSFPWI 1115
+ FG KEN H + SAWYHV YS K+ AL F WI
Sbjct: 1848 KEFGEQHKENCLLIHRVNIEKKVSAWYHVAYSD--LKDDRAL-GFYWI 1892
Score = 347 (127.2 bits), Expect = 6.5e-23, Sum P(4) = 6.5e-23
Identities = 113/402 (28%), Positives = 197/402 (49%)
Query: 394 VTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSK- 452
+TP + + P L+ S V+ F +S+F+ V V E L +G+ +K
Sbjct: 1198 ITPSRTIFIQPTLQRSCRAVRKFG--SSNFIVVKIVNESLEPL----------QGVNNKH 1245
Query: 453 PYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGC 512
P +RI IL+ GI++G + Y + S SQLR S W F SN ++ V+ W G
Sbjct: 1246 PLHE---NRIKPILEGGILVGGEIYSYAGNSNSQLREYSSW-FVSN-QIGTHTVKIWSG- 1299
Query: 513 FNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSF 572
+ +V K +G +FS++ T+ +P + I D+ NT+ F++G G+I
Sbjct: 1300 IEHVDNVRKFFRCIGLMFSTTIPTVTLPQNRIYRIQDIT----RNTHEFTEGCGEIGPEL 1355
Query: 573 ARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSFRK--LSLRRSMLKFE-----SRNRM 625
A+ + + + A+Q+R GG KGV+ V+ + + +R SM+KF +R
Sbjct: 1356 AKHLNENYNFRPSTCAYQVRIGGNKGVLVVNNQAPDPSGIYIRPSMVKFNPIDCGDEHRT 1415
Query: 626 LNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKL 685
L + S + C LNR++ISLLSTLG +D VF A+Q L N+ A ++
Sbjct: 1416 LEICSVSTTSRCKLNRQVISLLSTLGTQDNVFFALQDHYL--------NQVA--QIVNDT 1465
Query: 686 NGVDSKNILVKM---LLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGC 742
N SK +V+ + +G E +PY+ +L+S ++ ++ ++ +C I + R+L+G
Sbjct: 1466 NA--SKQAIVEFFPDITEG-ELYQDPYIRRILISLYKLKMERIQQKCHIEIKDSRMLLGV 1522
Query: 743 FDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVK 784
D T L VFV++ E+ + + + ++ ++K
Sbjct: 1523 CDPTNSLPPNTVFVQLEEEDEDDDDDGRKYEKVIEGLVMVIK 1564
Score = 44 (20.5 bits), Expect = 1.4e-38, Sum P(5) = 1.4e-38
Identities = 17/50 (34%), Positives = 23/50 (46%)
Query: 455 RTKIYSRILTILQDGIVIGDKHYEFL-AFSASQLRNNSVWMFASNDEVSA 503
R+K S+ + I D DK + L S+ L NNS+ SN E A
Sbjct: 754 RSKNESKFIIIYND-----DKDLKILDILSSENLLNNSINQILSNRERQA 798
Score = 40 (19.1 bits), Expect = 1.2e-38, Sum P(4) = 1.2e-38
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 58 LDFKSKAQN----LSLNDKLVFNSQNLKISETHSDI 89
+ FK+ Q S+ + LV NS+ L+I +SD+
Sbjct: 496 VSFKTSGQESLIETSICEFLVSNSKELQIFLNYSDV 531
Score = 40 (19.1 bits), Expect = 1.2e-38, Sum P(4) = 1.2e-38
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 1091 SAWYHVTYSPSYCKERMALLSFPWIVGDILLNIKSVNS 1128
S WY Y + ++LS + + D +N V+S
Sbjct: 2043 SKWYETLVQQQYITKNPSILSILFSIIDWSINSLFVDS 2080
Score = 39 (18.8 bits), Expect = 1.2e-38, Sum P(4) = 1.2e-38
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 244 STSFFWEIKNGLLASDISNIFPFYKEDKTDLIL 276
S S + + N +I+N+ F K+++ + I+
Sbjct: 1115 SQSSYGRVLNQDFIVEINNLLAFGKQEEAEFII 1147
Score = 39 (18.8 bits), Expect = 1.4e-38, Sum P(5) = 1.4e-38
Identities = 16/57 (28%), Positives = 25/57 (43%)
Query: 292 VKCRPGFNLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKL 348
V+ P F + E L + + + + + EL +LS LS E VL +L L
Sbjct: 536 VRGNPSFLKALERLDKYSKQLESIYIEYTKVLIELYALLSVLSTEGPKQVLTRLDLL 592
>DICTYBASE|DDB_G0280963 [details] [associations]
symbol:rrpC "RNA-directed RNA polymerase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR007855 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF05183 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0280963 GO:GO:0005524
GenomeReviews:CM000152_GR EMBL:AAFI02000040 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG1111 GO:GO:0003968 PANTHER:PTHR23079
ProtClustDB:CLSZ2429575 RefSeq:XP_640790.1
ProteinModelPortal:Q54UI6 STRING:Q54UI6 EnsemblProtists:DDB0216193
GeneID:8622843 KEGG:ddi:DDB_G0280963 InParanoid:Q54UI6 OMA:YELFNDY
Uniprot:Q54UI6
Length = 2285
Score = 379 (138.5 bits), Expect = 1.2e-37, Sum P(4) = 1.2e-37
Identities = 130/423 (30%), Positives = 205/423 (48%)
Query: 447 RGIFSKPYRTKIYSRILTILQDGIVI---GDKHYEFLAFSASQLRNNSVWMFASNDEVSA 503
RG+ TK RI +GI I K Y F+ S SQ+RN S W F D+V+
Sbjct: 1120 RGLNKSSPLTKTIERIFN---NGIEIIQGSGKKYFFIGCSQSQVRNYSAW-FVLEDKVTN 1175
Query: 504 E-DVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFS 562
E W G + + K + LFS++ ++ V+ +EMIPD+ ++ +G+ F+
Sbjct: 1176 EKSALNWSGIKYESLQMIKVFRNLCLLFSTTLKSQVI--YKIEMIPDI-ISKEGHN--FT 1230
Query: 563 DGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRN-SFRKLSLRRSMLKFES 621
+G G I + Q+ + + A+QIR GG KGV+ ++ N L +R SM KFE
Sbjct: 1231 EGCGFIGSKLVELINQQNNYNSSTCAYQIRLGGSKGVLVLNENIDEMSLQIRPSMSKFEL 1290
Query: 622 RNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDV 681
+ + + +++ EI+S +T K + +Q + LL + L +
Sbjct: 1291 DYKSGQLDEEHKTL------EIVSASTTSRCK------LNRQAITLLSNAGVEDSTFLQM 1338
Query: 682 LQ-KLNG-----VD---SKNILVKML--LQGYEPNVEPYLSMMLLSHHENQLSDLKSRCR 730
L+ +LN VD SK +L + YE + Y+ +LL ++++L ++ +C
Sbjct: 1339 LEVELNQNAQTLVDVNLSKELLGDFFQHITEYELFNDYYIRSILLKLYKSKLIKIQDKCW 1398
Query: 731 IYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVT 790
I V + R L+G D +G L V++ V EEL+ D K ++ G+V V
Sbjct: 1399 IEVKESRNLLGVCDTSGTLPEDTVYIEV----EELDPIDNLM------KPKVIIGRVAVL 1448
Query: 791 KNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDN 850
KNPC HPGDVR L+A+ L K V + F G P+ +CSG DLDGD +F+ +D
Sbjct: 1449 KNPCHHPGDVRFLKAIDHPPLNGKRNV--LFFSTNGMVPNFKQCSGSDLDGDRYFVIYDQ 1506
Query: 851 DLI 853
LI
Sbjct: 1507 TLI 1509
Score = 180 (68.4 bits), Expect = 1.8e-16, Sum P(4) = 1.8e-16
Identities = 78/300 (26%), Positives = 135/300 (45%)
Query: 394 VTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKP 453
VTP +I P L N +++ F+ F+ F +E+ P L+ S +K
Sbjct: 1079 VTPSRIVLKPPRLTLGNRILRKFSP--EKFILFNFTDENLE--PFRGLNKSSP---LTKT 1131
Query: 454 YRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAE-DVRGWMGC 512
+I++ + I+Q G K++ F+ S SQ+RN S W F D+V+ E W G
Sbjct: 1132 IE-RIFNNGIEIIQGS---GKKYF-FIGCSQSQVRNYSAW-FVLEDKVTNEKSALNWSGI 1185
Query: 513 FNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDG-IGKISLS 571
+ + K + LFS++ ++ V+ +EMIPD+ ++ +G+ + G IG +
Sbjct: 1186 KYESLQMIKVFRNLCLLFSTTLKSQVI--YKIEMIPDI-ISKEGHNFTEGCGFIGSKLVE 1242
Query: 572 FARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSFRKLSLRRSMLKFE---------SR 622
Q Q S T + G ++ + L +R SM KFE
Sbjct: 1243 LINQ--QNNYNSSTCAYQIRLGGSKGVLVLNENIDEMSLQIRPSMSKFELDYKSGQLDEE 1300
Query: 623 NRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVL 682
++ L + S + C LNR+ I+LLS GV+D F M + +L + L++ + ++L
Sbjct: 1301 HKTLEIVSASTTSRCKLNRQAITLLSNAGVEDSTFLQMLEVELNQNAQTLVDVNLSKELL 1360
Score = 147 (56.8 bits), Expect = 1.2e-37, Sum P(4) = 1.2e-37
Identities = 67/252 (26%), Positives = 110/252 (43%)
Query: 806 VYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDL-IPCETEPPMDYT 864
+Y+ L +D + P GE N G + D + + DND+ IP T T
Sbjct: 1503 IYDQTLIREDLITHE--PYLGEEQTVNPLIGEEDSDDDQYENDDNDITIPTSTTTKS--T 1558
Query: 865 GRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHS 924
+ D+ L+ + K LG IS HL A D +K S + +A +
Sbjct: 1559 NNTPTKLS-DIYLKNVDK--------SKLGTISNTHL--AISDIEKVSSINSIKVAIQCA 1607
Query: 925 MAVDFAKTGA----PAEMPLALKPKEFPDFMERED-----------KPRYISFGVLGKLY 969
+ VD KT P ++ LK K +P FM+ ++ + YIS V+GK+Y
Sbjct: 1608 IEVDSVKTSVHGIIPRDVKSILKEKGYPHFMKIKNGSTFEYKGGNQRKYYISDRVIGKIY 1667
Query: 970 RATLDSIMQIRSNAIW-SEKIAEASYDHDLEVDGFEAFLGVAESHKEM-YEEEMNALMNY 1027
DS N +W + + EA D L V G++ +L M Y+ ++N+++
Sbjct: 1668 ----DSA----ENLLWFGDFLPEAKVDESLLVQGYKEYLNHENFTTYMDYKSKINSILRR 1719
Query: 1028 YGASTEDEILTG 1039
+GA +E+++L G
Sbjct: 1720 FGAQSEEDLLIG 1731
Score = 49 (22.3 bits), Expect = 9.8e-08, Sum P(3) = 9.8e-08
Identities = 17/60 (28%), Positives = 31/60 (51%)
Query: 756 VRVTMTREELESKDQSFFHRVD-DKTSIVKGKVL---VTKNPCLHPGDVRVLEAVYEMKL 811
+++T T E E K F +D + S + KV+ +TK+P L P + ++E + + L
Sbjct: 1980 IKITSTILEFEFKKIKFI--IDFNSNSWYQSKVISLYITKHPSLVPTLLVIIEHIKNISL 2037
Score = 44 (20.5 bits), Expect = 1.2e-37, Sum P(4) = 1.2e-37
Identities = 13/55 (23%), Positives = 25/55 (45%)
Query: 36 LEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKISETHSDIV 90
++I+TDR K +S S ++S+ L +S + +S + S +V
Sbjct: 527 IDIMTDRMRQKELSTSSSSTSSSSSSSSNNSISMVSSLSSSSLSPSLSTSSSGVV 581
Score = 37 (18.1 bits), Expect = 1.2e-37, Sum P(4) = 1.2e-37
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 1064 LSAKNLQNEAKEWFGSSCKENEHPQLASAWYHVTYS 1099
LS ++ E +E + E E + AWY ++YS
Sbjct: 1782 LSMLQIEEE-EELINENYTEIE--KKVCAWYFISYS 1814
>ASPGD|ASPL0000071805 [details] [associations]
symbol:rrpB species:162425 "Emericella nidulans"
[GO:0005724 "nuclear telomeric heterochromatin" evidence=IEA]
[GO:0005721 "centromeric heterochromatin" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0031934 "mating-type region
heterochromatin" evidence=IEA] [GO:0031380 "nuclear RNA-directed
RNA polymerase complex" evidence=IEA] [GO:0003968 "RNA-directed RNA
polymerase activity" evidence=IEA] [GO:0045141 "meiotic telomere
clustering" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0031048 "chromatin silencing by
small RNA" evidence=IEA] [GO:0031060 "regulation of histone
methylation" evidence=IEA] [GO:0071585 "detoxification of cadmium
ion" evidence=IEA] [GO:0034613 "cellular protein localization"
evidence=IEA] [GO:0071276 "cellular response to cadmium ion"
evidence=IEA] [GO:0030702 "chromatin silencing at centromere"
evidence=IEA] InterPro:IPR007855 Pfam:PF05183 EMBL:BN001303
GO:GO:0003968 PANTHER:PTHR23079 EnsemblFungi:CADANIAT00005632
Uniprot:C8VAM8
Length = 869
Score = 193 (73.0 bits), Expect = 9.6e-27, Sum P(4) = 9.6e-27
Identities = 53/162 (32%), Positives = 88/162 (54%)
Query: 544 VEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQ-----KCGLSHTPSAFQIRYGGYKG 598
V+ I D+E GN Y FSDG+G+IS F Q+ + K PSA+Q R G KG
Sbjct: 332 VKKIDDIE----GNGYIFSDGVGRIS-KFLAQIVKSELKIKTPTKEPPSAYQFRLVGCKG 386
Query: 599 VIAVDRNSF-RKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVF 657
++ V + +++ +R+S KF + ++ L + +WS+ LNR++I +LSTLG+ D+VF
Sbjct: 387 MLIVFPQARPQEVHIRKSQFKFAALSQGLEIIRWSQFTVASLNRQLILVLSTLGITDKVF 446
Query: 658 EAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLL 699
+ L L + + + A +L+K VD + + + L
Sbjct: 447 HLKLKTMLRNLDEAMESDPKAAHLLRKY--VDPNQVTLTIYL 486
Score = 172 (65.6 bits), Expect = 9.6e-27, Sum P(4) = 9.6e-27
Identities = 32/77 (41%), Positives = 47/77 (61%)
Query: 778 DKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGG 837
+K I++G ++ +NP LHPG +RV+ AV L D ++ P+ G+R + CSG
Sbjct: 491 EKYEIIEGICILARNPSLHPGGIRVVRAVNAPGLHHLK--DIVVLPRTGDRDIASMCSGS 548
Query: 838 DLDGDIFFISWDNDLIP 854
DLDGD F + WD DL+P
Sbjct: 549 DLDGDDFLVIWDQDLLP 565
Score = 84 (34.6 bits), Expect = 9.6e-27, Sum P(4) = 9.6e-27
Identities = 25/80 (31%), Positives = 40/80 (50%)
Query: 407 ETSNYVVKNFAKYASDFMRVTFVE-EDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTI 465
+ SN V++ +A A +F+RV F + + ++ A +T ++ +RI
Sbjct: 247 DISNCVIRRYANLADNFLRVRFTDAKHIGRIHATVDNTM-----------DEVLTRIKRA 295
Query: 466 LQDGIVIGDKHYEFLAFSAS 485
L +GI IG YEFLAF S
Sbjct: 296 LANGITIGSTRYEFLAFGNS 315
Score = 49 (22.3 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 21/93 (22%), Positives = 40/93 (43%)
Query: 544 VEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVD 603
+ +IP+ E TS G + + +I+L + + L P +++ G +V
Sbjct: 90 IRLIPNPEQTSPGTDF-WKSAFRRITLHNGKSIYISMSLGKKPPNWEVSAQSKGG--SVS 146
Query: 604 RNSFRKLSLRRSMLKFESRNRMLNVTKWSESMP 636
R +KL LR L+ ++ + KW + P
Sbjct: 147 R---QKLRLR-FRLRDTTKEWPTPICKWIDLNP 175
Score = 40 (19.1 bits), Expect = 9.6e-27, Sum P(4) = 9.6e-27
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 512 CFNKIRSVSKCAARMGQL 529
CF+ R++S C A + ++
Sbjct: 318 CFSTTRAISGCTAHVKKI 335
>TAIR|locus:2052020 [details] [associations]
symbol:AT2G19930 species:3702 "Arabidopsis thaliana"
[GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016441 "posttranscriptional gene silencing" evidence=ISS]
[GO:0009410 "response to xenobiotic stimulus" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0009845
"seed germination" evidence=RCA] [GO:0009855 "determination of
bilateral symmetry" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0009944 "polarity specification of
adaxial/abaxial axis" evidence=RCA] [GO:0010014 "meristem
initiation" evidence=RCA] [GO:0010075 "regulation of meristem
growth" evidence=RCA] [GO:0010162 "seed dormancy process"
evidence=RCA] [GO:0010182 "sugar mediated signaling pathway"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0016567 "protein
ubiquitination" evidence=RCA] [GO:0019915 "lipid storage"
evidence=RCA] [GO:0048522 "positive regulation of cellular process"
evidence=RCA] [GO:0050826 "response to freezing" evidence=RCA]
InterPro:IPR007855 Pfam:PF05183 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003723 GO:GO:0031047 EMBL:AC005169
GO:GO:0003968 KO:K11699 PANTHER:PTHR23079 EMBL:AK229381
IPI:IPI00786210 PIR:H84582 RefSeq:NP_179583.3 UniGene:At.39772
EnsemblPlants:AT2G19930.1 GeneID:816512 KEGG:ath:AT2G19930
TAIR:At2g19930 HOGENOM:HOG000082682 OMA:LANYMAR
Genevestigator:O82188 Uniprot:O82188
Length = 977
Score = 175 (66.7 bits), Expect = 2.8e-16, Sum P(3) = 2.8e-16
Identities = 48/139 (34%), Positives = 74/139 (53%)
Query: 783 VKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVD----CIIFPQKGERPHPNECSGGD 838
+ G+VLV +NP LH GD+ +L+A Y LEE YV + FPQKG R +E +GGD
Sbjct: 625 ISGEVLVYRNPGLHFGDIHILKATYVKALEE--YVGNSKFAVFFPQKGPRSLGDEIAGGD 682
Query: 839 LDGDIFFISWDNDLI----PCE-----TEPPMDYTGRRSRIMDHDVTLEEIHKFFVD--Y 887
DGD++FIS + +L+ P E T P +GR + + EE+ + F+ +
Sbjct: 683 FDGDMYFISRNPELLENFKPSEPWVSLTPPSKSNSGRAPSQLSPEELEEELFEMFLTAGF 742
Query: 888 MINDTLGAISTAHLVHADR 906
++ +G + + L DR
Sbjct: 743 HASNVIGIAADSWLTIMDR 761
Score = 122 (48.0 bits), Expect = 2.8e-16, Sum P(3) = 2.8e-16
Identities = 50/183 (27%), Positives = 90/183 (49%)
Query: 589 FQIRYGGY--KGVIAVDRNSF-RKLSLRRSMLK---------FESRNRMLNVTKWSESMP 636
F++ Y GY KG +++ R + +R SM+K F + N + VT +
Sbjct: 442 FRMFYDGYAVKGTFLLNKKLCPRTVQVRPSMIKVSKDPSLSNFSTFNALEVVTTSNPPKR 501
Query: 637 CFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVK 696
L++ +++LLS G+ +E F + L + N+ AAL+ +D +N +
Sbjct: 502 TKLSKNLVALLSYGGIPNEFFLDILLNTLEESKSIFYNKRAALNAALNYGEMDDQNA-AQ 560
Query: 697 MLLQGY---EPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQ 753
M+L G EP+++ YLS++L + + +DLK+ ++ V + L+G D TG L +
Sbjct: 561 MILVGIPLDEPHLKNYLSILL----KTEKNDLKAG-KLPVTESYYLMGTVDPTGALKEDE 615
Query: 754 VFV 756
V V
Sbjct: 616 VCV 618
Score = 94 (38.1 bits), Expect = 7.3e-08, Sum P(3) = 7.3e-08
Identities = 33/124 (26%), Positives = 56/124 (45%)
Query: 857 TEPPMDYTGRRSRIMDHDVTLEEIHKFFVD--YMINDTLGAISTAHLVHADR----DPDK 910
T P +GR + + EE+ + F+ + ++ +G + + L DR D+
Sbjct: 710 TPPSKSNSGRAPSQLSPEELEEELFEMFLTAGFHASNVIGIAADSWLTIMDRFLILGDDR 769
Query: 911 ARSS-----KCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVL 965
A K L L ++ A+D K G +P LKP FP +MER+ K + S +L
Sbjct: 770 AEEKAEMKKKMLELIDIYYDALDAPKKGDKVYLPNKLKPDIFPHYMERDKK--FQSTSIL 827
Query: 966 GKLY 969
G ++
Sbjct: 828 GLIF 831
Score = 48 (22.0 bits), Expect = 2.8e-16, Sum P(3) = 2.8e-16
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 451 SKPYRTKIYSRILTILQDGIVIGDKHYEFLAF 482
S Y Y I ++GI+IG + Y+F F
Sbjct: 256 SSTYSIDHYFTYKGIAKNGIMIGLRRYQFFVF 287
Score = 37 (18.1 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 268 KEDKTDLILEEGEEFCTTSEIVPLVKCRPGFN 299
KED+ +ILE G+ + E+ LV PG +
Sbjct: 612 KEDEVCVILESGQ---ISGEV--LVYRNPGLH 638
>TAIR|locus:2052040 [details] [associations]
symbol:AT2G19910 species:3702 "Arabidopsis thaliana"
[GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016441 "posttranscriptional gene silencing" evidence=ISS]
InterPro:IPR007855 Pfam:PF05183 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003723 GO:GO:0031047 EMBL:AC005169
GO:GO:0003968 KO:K11699 PANTHER:PTHR23079 IPI:IPI00534018
PIR:F84582 RefSeq:NP_179581.2 UniGene:At.52837 PaxDb:O82190
PRIDE:O82190 EnsemblPlants:AT2G19910.1 GeneID:816510
KEGG:ath:AT2G19910 TAIR:At2g19910 eggNOG:NOG279775
InParanoid:O82190 OMA:IFYSERA PhylomeDB:O82190
Genevestigator:O82190 Uniprot:O82190
Length = 992
Score = 178 (67.7 bits), Expect = 8.9e-15, Sum P(5) = 8.9e-15
Identities = 48/127 (37%), Positives = 68/127 (53%)
Query: 783 VKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVD----CIIFPQKGERPHPNECSGGD 838
+ G VLV +NP LH GD+ VL+A Y LE DYV + FPQKG R +E +GGD
Sbjct: 636 ISGDVLVYRNPGLHFGDIHVLKATYVKALE--DYVGNAKFAVFFPQKGPRSLGDEIAGGD 693
Query: 839 LDGDIFFISWDNDLI----PCE-----TEPPMDYTGRRSRIMDHDVTLEEIHKFFVD--Y 887
DGD++FIS + L+ P E ++P Y GR+ + + EE+ K F+ +
Sbjct: 694 FDGDMYFISRNPKLLEHFKPSEPWVSSSKPSKIYCGRKPSELSEEELEEELFKMFLKARF 753
Query: 888 MINDTLG 894
D +G
Sbjct: 754 CKRDVIG 760
Score = 110 (43.8 bits), Expect = 6.4e-08, Sum P(4) = 6.4e-08
Identities = 36/130 (27%), Positives = 59/130 (45%)
Query: 857 TEPPMDYTGRRSRIMDHDVTLEEIHKFFVD--YMINDTLG-------AISTAHLVHADRD 907
++P Y GR+ + + EE+ K F+ + D +G I L D
Sbjct: 721 SKPSKIYCGRKPSELSEEELEEELFKMFLKARFCKRDVIGMAADCWLGIMDPFLTLGDES 780
Query: 908 PDKA--RSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVL 965
+ R L L ++ A+D K GA ++P L+ K FP +MER+ K + S +L
Sbjct: 781 AKEKYERKKNILKLIDIYYDALDAPKKGAKVDLPPDLEIKNFPHYMERDPKRDFRSTSIL 840
Query: 966 GKLYRATLDS 975
G ++ T+DS
Sbjct: 841 GLIFD-TVDS 849
Score = 94 (38.1 bits), Expect = 8.9e-15, Sum P(5) = 8.9e-15
Identities = 56/209 (26%), Positives = 90/209 (43%)
Query: 562 SDGIGKISLSFARQVAQKCGLSHTPSAFQIR--YGGY--KGVIAVDRN-SFRKLSLRRSM 616
S+ I +L+F Q CG P Q R Y GY KG ++ R + +R SM
Sbjct: 429 SNNIQSKNLNFEGQ--GPCG-QEPPLLIQFRIFYNGYAVKGTFLTNKKLPPRTVQVRPSM 485
Query: 617 LK-FESR--------NRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLIL 667
+K +E R N + VT + L+R +++LLS GV ++ F + + L
Sbjct: 486 IKVYEDRTLSNLSTFNSLEVVTTSNPPRKARLSRNLVALLSYGGVPNDFFLNILRNTLEE 545
Query: 668 LGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKS 727
+ + AA +N D + M+L G P EPYL L + + + LK+
Sbjct: 546 SKTIFYSERAAFKAA--INYGDDQ-YTADMILVGI-PLDEPYLKDRLSYLLKTERNALKA 601
Query: 728 RCRIYVPKGRLLIGCFDETGILNYGQVFV 756
R + + ++G D TG L ++ V
Sbjct: 602 G-RFPIDESYYIMGTVDPTGELKENEICV 629
Score = 59 (25.8 bits), Expect = 8.9e-15, Sum P(5) = 8.9e-15
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 439 NALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAF 482
N L+ + + + Y +YS I ++GI++G + Y F F
Sbjct: 248 NVLTVKFDKVLGVETYCNDLYSTYKGIAKNGIMVGLRRYRFFVF 291
Score = 46 (21.3 bits), Expect = 8.9e-15, Sum P(5) = 8.9e-15
Identities = 28/113 (24%), Positives = 44/113 (38%)
Query: 473 GDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSS 532
G K Y S + + + ++FA S + R N + S+ +R + S
Sbjct: 307 GVKCYFIRTDSTASIDMQNPYIFAGK---SMHEARMHFMHVNTLSSLPNYMSRFSLILSK 363
Query: 533 SKQTLVVPVQDV--EMIPDVE---------VTSDGNTYCFSDGIGKISLSFAR 574
+K TL V + + E I D+ + +G SDG G IS AR
Sbjct: 364 TK-TLEVDMTGITFEQIDDIHCHDQDDKDVLDKNGKPCIHSDGTGYISEDLAR 415
Score = 39 (18.8 bits), Expect = 8.9e-15, Sum P(5) = 8.9e-15
Identities = 20/62 (32%), Positives = 29/62 (46%)
Query: 1004 EAFLGVA-ESHKEMYEEEMNALMN---YYGASTEDEI-----LTGNL--RNRASYLQRDN 1052
+ FL + ES KE YE + N L YY A + L +L +N Y++RD
Sbjct: 771 DPFLTLGDESAKEKYERKKNILKLIDIYYDALDAPKKGAKVDLPPDLEIKNFPHYMERDP 830
Query: 1053 RR 1054
+R
Sbjct: 831 KR 832
>TAIR|locus:2052030 [details] [associations]
symbol:AT2G19920 species:3702 "Arabidopsis thaliana"
[GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
[GO:0016441 "posttranscriptional gene silencing" evidence=ISS]
InterPro:IPR007855 Pfam:PF05183 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003723 GO:GO:0031047 EMBL:AC005169
GO:GO:0003968 KO:K11699 PANTHER:PTHR23079 IPI:IPI00546115
PIR:G84582 RefSeq:NP_179582.2 UniGene:At.50085 PRIDE:O82189
EnsemblPlants:AT2G19920.1 GeneID:816511 KEGG:ath:AT2G19920
TAIR:At2g19920 eggNOG:NOG266676 InParanoid:O82189 OMA:MSIHEAR
PhylomeDB:O82189 Genevestigator:O82189 Uniprot:O82189
Length = 927
Score = 170 (64.9 bits), Expect = 1.7e-13, Sum P(3) = 1.7e-13
Identities = 50/146 (34%), Positives = 77/146 (52%)
Query: 777 DDKTSIVKGK-VLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDC----IIFPQKGERPHP 831
D+ + + K + VLV +NP LH GD+ +L+A Y LE+ YV + FPQKG R
Sbjct: 618 DEVSGLAKSQDVLVYRNPGLHFGDIHILKATYVKSLEQ--YVGNSKYGVFFPQKGPRSLG 675
Query: 832 NECSGGDLDGDIFFISWDNDLI----PCE---TEPPMD--YTGRRSRIMDHDVTLEEIHK 882
+E +GGD DGD++FIS + L+ P E + P YTGR+ + + EE+ K
Sbjct: 676 DEIAGGDFDGDMYFISRNPKLLEHYKPSEPWVSSSPRSKIYTGRQPSELSPEQLEEELFK 735
Query: 883 FFVD--YMINDTLGAISTAHLVHADR 906
F+ + + +G + + L DR
Sbjct: 736 IFLKTGFSPSSVIGQAADSWLAIMDR 761
Score = 100 (40.3 bits), Expect = 3.7e-06, Sum P(3) = 3.7e-06
Identities = 36/123 (29%), Positives = 58/123 (47%)
Query: 863 YTGRRSRIMDHDVTLEEIHKFFVD--YMINDTLGAISTAHLVHADR-----DP---DKAR 912
YTGR+ + + EE+ K F+ + + +G + + L DR D +KA
Sbjct: 716 YTGRQPSELSPEQLEEELFKIFLKTGFSPSSVIGQAADSWLAIMDRFLTLGDENVKEKAE 775
Query: 913 -SSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRA 971
K L L ++ A+D KTG +PL +K FP +MER + S +LG ++
Sbjct: 776 MKKKMLKLTDIYYDAIDAPKTGTEVNLPLDVKVDLFPHYMERNKT--FKSTSILGLIFD- 832
Query: 972 TLD 974
T+D
Sbjct: 833 TVD 835
Score = 94 (38.1 bits), Expect = 1.7e-13, Sum P(3) = 1.7e-13
Identities = 39/151 (25%), Positives = 68/151 (45%)
Query: 604 RNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQ 663
R S K+ +++ F + N + VT + L++ +++LLS GV ++ F +
Sbjct: 473 RPSMIKVYKDKNLSNFSTFNSLEVVTTSNPPKRAKLSKNLVALLSYGGVPNDFFLDILLN 532
Query: 664 QLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLS 723
L + AA +D KN L +M++ G P EPYL L + +
Sbjct: 533 TLEKKKTIFFKVRAAGKAALHYGNMDDKNAL-QMIMAGI-PLDEPYLKHYLSKLLKLEKD 590
Query: 724 DLKSRCRIYVPKGRLLIGCFDETGILNYGQV 754
DLK+ ++ + + L+G D TG L +V
Sbjct: 591 DLKAG-KLPIDESYYLMGTVDPTGELKEDEV 620
Score = 53 (23.7 bits), Expect = 1.7e-13, Sum P(3) = 1.7e-13
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 459 YSRILTILQDGIVIGDKHYEFLAF 482
YS+ I ++GI++G + Y+F F
Sbjct: 268 YSKYKEIAKNGIMVGLRRYQFFVF 291
Score = 50 (22.7 bits), Expect = 3.5e-13, Sum P(3) = 3.5e-13
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 318 SLVAADAELIQILSGLSMETALMVLQKLHKLKS 350
S ++D E ILSG+S+ A M +H L S
Sbjct: 317 STASSDMENPYILSGMSIHEARMHFMHVHTLPS 349
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.136 0.407 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1131 1131 0.00090 123 3 11 22 0.37 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 18
No. of states in DFA: 636 (68 KB)
Total size of DFA: 550 KB (2250 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 91.85u 0.17s 92.02t Elapsed: 00:00:06
Total cpu time: 91.86u 0.18s 92.04t Elapsed: 00:00:06
Start: Fri May 10 18:20:39 2013 End: Fri May 10 18:20:45 2013