BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001183
(1131 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224133496|ref|XP_002321582.1| rna-dependent RNA polymerase [Populus trichocarpa]
gi|222868578|gb|EEF05709.1| rna-dependent RNA polymerase [Populus trichocarpa]
Length = 1110
Score = 1644 bits (4256), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 795/1127 (70%), Positives = 932/1127 (82%), Gaps = 25/1127 (2%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKA 64
+V V+NIPQT AK++L +L ++LGK+SVFA+EI T R NW SRG GRVQF+SL+ K +A
Sbjct: 9 SVRVTNIPQTITAKEILQYLVAQLGKDSVFAIEISTVRKNWNSRGFGRVQFSSLEVKHEA 68
Query: 65 QNLSLNDKLVFNSQNLKISETHSDIVPRPVKAQHRVEDGVLHVGVMCKEERLRVLQTFEG 124
+LSL +KLV SQNLK+SET+ DI+PRPVK Q+R+E+GVL+VG M KE L VL+ +EG
Sbjct: 69 LSLSLKNKLVLKSQNLKLSETYDDIIPRPVKDQNRMENGVLYVGFMKKETTLCVLEYWEG 128
Query: 125 VRGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFSLDEG 184
VRGW +P+RRR+EFW+ + QE + +K+ + FED+LE VG+ LD G
Sbjct: 129 VRGWFMPERRRIEFWI---------RVGQEFR-------YKLVVEFEDILEAVGYPLD-G 171
Query: 185 ATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKSIGCS 244
VN ++ KL+YGP+IYQK+SGP +ASKF ++RY CKEDFDF WVRTTD S KSIG S
Sbjct: 172 DKVNAVVLKLRYGPRIYQKISGPGIASKFSTNRYFYCKEDFDFLWVRTTDISAIKSIGQS 231
Query: 245 TSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTTSEIVPLVKCRPGFNLSHEV 304
TSF WEI GL ASD FP+Y+ED L LE+GEEFC+ SE VPL++C L++EV
Sbjct: 232 TSFCWEIGEGLEASDTFRNFPYYQEDMNRLDLEDGEEFCSASETVPLIRCGSD-KLAYEV 290
Query: 305 LFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSFVKTQLH 364
LFQLNSLVH QK+SL A D++LI+IL L++ TA+++LQKLHKLK CYDP+SFVK L
Sbjct: 291 LFQLNSLVHTQKISLAAVDSDLIKILRNLTVNTAIIILQKLHKLKMTCYDPLSFVKQSL- 349
Query: 365 VLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFM 424
R S P K L ++N+MSC+RAL+TP KI+CLGPE ETSNYVVK+FA+YASDF+
Sbjct: 350 ---RESLSSP---PKSLTENNIMSCHRALITPSKIFCLGPEYETSNYVVKHFAQYASDFI 403
Query: 425 RVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSA 484
RVTFVEEDWSKLPANA+STSIQRGIF+KP+RT IY RIL+IL+DG VIG K +EFLAFSA
Sbjct: 404 RVTFVEEDWSKLPANAISTSIQRGIFAKPFRTGIYHRILSILRDGFVIGAKRFEFLAFSA 463
Query: 485 SQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDV 544
SQLR+NSVWMFASN+ V AED+R WMGCF+KIRSVSKCAARMGQLFSSS QT VVPVQDV
Sbjct: 464 SQLRSNSVWMFASNNGVKAEDIRKWMGCFDKIRSVSKCAARMGQLFSSSLQTFVVPVQDV 523
Query: 545 EMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDR 604
E+IPD+EVT+DG YCFSDGIGKISLSFA+QVA KCGLSHTPSAFQIRYGGYKGV+AVDR
Sbjct: 524 EIIPDIEVTTDGIDYCFSDGIGKISLSFAKQVAHKCGLSHTPSAFQIRYGGYKGVVAVDR 583
Query: 605 NSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQ 664
NSFRKLSLR SMLKF+S NRMLNVTKWSESMPC+LNREIISLLSTLGV DE+F+A+QQ+Q
Sbjct: 584 NSFRKLSLRSSMLKFDSENRMLNVTKWSESMPCYLNREIISLLSTLGVADEIFQALQQKQ 643
Query: 665 LILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSD 724
L L KML N+E+ALDVL+ L DSKNILV+MLLQGYEPNVEPYLSMML ++HEN L +
Sbjct: 644 LYRLRKMLTNKESALDVLENLAWADSKNILVQMLLQGYEPNVEPYLSMMLQAYHENSLME 703
Query: 725 LKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVK 784
L+SRCRI+VPKGR+LIGC DE+GIL+YGQV+VR+TMT+ EL+ DQSFF +VD+ TS +
Sbjct: 704 LRSRCRIFVPKGRILIGCLDESGILDYGQVYVRITMTKAELQCCDQSFFRKVDESTSTII 763
Query: 785 GKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIF 844
G+V VTKNPCLHPGD+RVLEAVY+++LEEK VDCIIFPQ G RPHPNECSGGDLDGD F
Sbjct: 764 GEVAVTKNPCLHPGDIRVLEAVYDVELEEKGLVDCIIFPQNGGRPHPNECSGGDLDGDQF 823
Query: 845 FISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHA 904
FISWD L+PC TE PMDY G R RIMDH+VTLEEI +FFVDYMINDTLGAISTAHLVHA
Sbjct: 824 FISWDEGLLPCHTEAPMDYVGGRQRIMDHNVTLEEIQRFFVDYMINDTLGAISTAHLVHA 883
Query: 905 DRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGV 964
D +PDKARS KCL LATLHSMAVDFAKTGAPAEMPL LKP+EFPDFMER +K YIS GV
Sbjct: 884 DCEPDKARSEKCLQLATLHSMAVDFAKTGAPAEMPLYLKPREFPDFMERAEKQMYISDGV 943
Query: 965 LGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNAL 1024
LGKLYR DS Q RSN +WS+KIAEA+YD DLEV GFE FLG+A +KE Y E+M+ L
Sbjct: 944 LGKLYRDIHDSTRQERSNFMWSKKIAEATYDQDLEVKGFEDFLGIASIYKEKYMEKMSTL 1003
Query: 1025 MNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSCKEN 1084
M+YYGA TEDEILTGNLR+R +YLQRDNR+YGD+KDRIL+S KNL+ EAKEWF SSC
Sbjct: 1004 MDYYGAKTEDEILTGNLRHRPTYLQRDNRKYGDVKDRILVSLKNLKKEAKEWFESSCNPT 1063
Query: 1085 EHPQLASAWYHVTYSPSYCKERMALLSFPWIVGDILLNIKSVNSRKA 1131
EH +ASAWYHVTY P+Y ERM LSFPWIVGDILLNIKS+NSR A
Sbjct: 1064 EHQCMASAWYHVTYHPTYFHERMNCLSFPWIVGDILLNIKSLNSRNA 1110
>gi|315307484|gb|ADU04145.1| hypothetical protein [Gossypium hirsutum]
Length = 1147
Score = 1636 bits (4236), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 785/1124 (69%), Positives = 928/1124 (82%), Gaps = 22/1124 (1%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKA 64
T+ +++IPQTA+AKDLL F ESKLG +SVFA+EI TDR+NWKSRG GRVQF + KS A
Sbjct: 10 TLRLTHIPQTAVAKDLLDFFESKLGPDSVFAIEISTDRNNWKSRGFGRVQFAAPQAKSDA 69
Query: 65 QNLSLNDKLVFNSQNLKISETHSDIVPRPVKAQHRVEDGVLHVGVMCKEERLRVLQTFEG 124
LS +D L+F S +LK+S T+ DI+PRP++A HR++ GVLH G M ++ LRVL+ +EG
Sbjct: 70 LRLSRHDHLLFKSHSLKLSRTYDDIIPRPIRADHRLDGGVLHAGFMSSDDCLRVLERWEG 129
Query: 125 VRGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFSLDEG 184
VRGW++P+RRRLEFWVW +GE C+K++ LF+D+ ETVG D G
Sbjct: 130 VRGWIMPERRRLEFWVWT--DGE---------------CYKLDFLFDDIFETVGCCFD-G 171
Query: 185 ATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKSIGCS 244
+ N +L +++Y P+IYQKVSGP+VASKF +DRYHICKE FDF WVRTTDFS KSIG S
Sbjct: 172 SACNALLLRVRYAPRIYQKVSGPNVASKFSTDRYHICKEKFDFLWVRTTDFSRIKSIGQS 231
Query: 245 TSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTTSEIVPLVKCRPGFNLSHEV 304
TSF+WE G SD+S P Y+ED LE EF + SEIVPLVK L++E+
Sbjct: 232 TSFYWEFNAGFSISDMSTYLPCYREDIQSPSLEARREFSSPSEIVPLVKFPSDSKLAYEI 291
Query: 305 LFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSFVKTQLH 364
LFQLN+LVH QK+S+ A D +LI ILSGL +ETA+M+LQKL L+S CY+PVSFVK +L
Sbjct: 292 LFQLNALVHTQKISIAAVDTDLIGILSGLPVETAVMILQKLRLLQSPCYNPVSFVKAKLP 351
Query: 365 VLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFM 424
G+N + IPLS +RL +HNVMSC RAL+TP KIYCLGPELET+NYVVKNF +YASDFM
Sbjct: 352 T-GKNYR-IPLSVSERLKNHNVMSCRRALITPTKIYCLGPELETANYVVKNFVEYASDFM 409
Query: 425 RVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSA 484
RVTFVEEDWSKL ANA+ST + G+FS+P++TKIY RIL +LQ+GIVIGDK +EFLAFSA
Sbjct: 410 RVTFVEEDWSKLSANAISTGVHLGVFSRPFKTKIYDRILYVLQNGIVIGDKRFEFLAFSA 469
Query: 485 SQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDV 544
SQLR+NSVWMFASNDEV AED+R WMGCF KIRS+SKCA+RMGQLFSSS TLVVPVQDV
Sbjct: 470 SQLRSNSVWMFASNDEVKAEDIREWMGCFKKIRSISKCASRMGQLFSSSMPTLVVPVQDV 529
Query: 545 EMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDR 604
E+I D+EV +DG YCFSDGIGKISL FARQVA+KCGL+H PSAFQIRYGGYKGV+AVDR
Sbjct: 530 EIIDDIEVKTDGINYCFSDGIGKISLPFARQVAEKCGLNHIPSAFQIRYGGYKGVVAVDR 589
Query: 605 NSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQ 664
NSF K+SLR SMLKFES+ RMLNVTKWSESMPCFLNREI++L STLG+KDEVFE MQ++Q
Sbjct: 590 NSFWKMSLRDSMLKFESKVRMLNVTKWSESMPCFLNREIVTLFSTLGIKDEVFERMQEEQ 649
Query: 665 LILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSD 724
L LLGKML NREAALD LQ L GV+SKNILV+ML Q YEPNV+PYLSMML +H+EN LSD
Sbjct: 650 LCLLGKMLTNREAALDTLQSLGGVNSKNILVEML-QFYEPNVQPYLSMMLQAHYENLLSD 708
Query: 725 LKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVK 784
LKSRCRI+VPKGR+LIGC DETG LNYGQV++ + M + ELE DQS+F +VD++T+IV
Sbjct: 709 LKSRCRIFVPKGRILIGCLDETGTLNYGQVYLCIKMKKAELECADQSYFRKVDEETAIVI 768
Query: 785 GKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIF 844
GKV+VTKNPCLHPGDVRVLEAVYE +LEEK VDC++FPQKGERPHPNECSGGDLDGD F
Sbjct: 769 GKVVVTKNPCLHPGDVRVLEAVYEPQLEEKGLVDCLVFPQKGERPHPNECSGGDLDGDQF 828
Query: 845 FISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHA 904
FISWD DLIPC+TEPPMDYTGRR RIMDH+VTLEEI KFFVDYMINDTLGAISTAHLVHA
Sbjct: 829 FISWDKDLIPCQTEPPMDYTGRRPRIMDHEVTLEEIQKFFVDYMINDTLGAISTAHLVHA 888
Query: 905 DRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGV 964
DR+PDKA S CL LATLHSMAVDFAKTGAPAEMP ALKP+EFPDFM+R +KP Y S GV
Sbjct: 889 DREPDKACSENCLALATLHSMAVDFAKTGAPAEMPRALKPREFPDFMQRGNKPMYTSSGV 948
Query: 965 LGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNAL 1024
LGKLYRAT++S +Q RS +W++++AE YDHDLEV+GFE+ + VAE+HKEMYEE M+ L
Sbjct: 949 LGKLYRATINSTVQTRSKFVWTKEMAELVYDHDLEVNGFESLISVAETHKEMYEERMSLL 1008
Query: 1025 MNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSC-KE 1083
M+YY EDEILTGN+ N+A +L RDNRRYG+MK+RI+LS K+LQ EAKEWF SSC K
Sbjct: 1009 MSYYDVEYEDEILTGNIYNKAQFLLRDNRRYGEMKERIVLSVKDLQREAKEWFKSSCSKA 1068
Query: 1084 NEHPQLASAWYHVTYSPSYCKERMALLSFPWIVGDILLNIKSVN 1127
+EH +LASAWY+VTY P+Y +ERM LSFPWIVGDILL +KS N
Sbjct: 1069 DEHQKLASAWYYVTYHPNYFQERMNSLSFPWIVGDILLRVKSRN 1112
>gi|315307478|gb|ADU04140.1| hypothetical protein [Gossypium hirsutum]
Length = 1147
Score = 1628 bits (4217), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 783/1124 (69%), Positives = 929/1124 (82%), Gaps = 22/1124 (1%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKA 64
T+ ++NIPQTA+AKDLL F ESKLG +SVFA+EI TDR+NWKSRG GRVQF + S A
Sbjct: 10 TLRLTNIPQTAVAKDLLDFFESKLGPDSVFAIEISTDRNNWKSRGFGRVQFAAPQAMSDA 69
Query: 65 QNLSLNDKLVFNSQNLKISETHSDIVPRPVKAQHRVEDGVLHVGVMCKEERLRVLQTFEG 124
LS +D L+F S +LK+S T+ DI+PRP++A HR++ GVLH G M ++ LRVL+ +EG
Sbjct: 70 LRLSRHDHLLFKSHSLKLSRTYDDIIPRPIRADHRLDGGVLHAGFMSSDDCLRVLERWEG 129
Query: 125 VRGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFSLDEG 184
VRGW++P+RRRLEFWVW +GE C+K++ LF+D+ ETVG D G
Sbjct: 130 VRGWIMPERRRLEFWVWT--DGE---------------CYKLDFLFDDLFETVGCCFD-G 171
Query: 185 ATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKSIGCS 244
+ N +L +++Y P+ Y+KVSGP+VASKF +DRYHICKE FDF WVRTTDFS KSIG S
Sbjct: 172 SACNALLLRVRYAPRTYRKVSGPNVASKFSTDRYHICKEKFDFLWVRTTDFSRIKSIGQS 231
Query: 245 TSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTTSEIVPLVKCRPGFNLSHEV 304
TSF+WE G SD+S P Y+ED LE EF + SEIVPLVK L++E+
Sbjct: 232 TSFYWEFNAGFSISDMSTYLPCYREDIQSPSLEARGEFSSPSEIVPLVKFPSDSKLAYEI 291
Query: 305 LFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSFVKTQLH 364
LFQLN+LVH QK+S+ A D +LI ILS L +ETA+M+LQKL L+S CY+PVSFVK +L
Sbjct: 292 LFQLNALVHTQKISIAAVDTDLIGILSVLPVETAVMILQKLRLLQSPCYNPVSFVKAKLP 351
Query: 365 VLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFM 424
G+N + IPLS +RL +HNVMSC+RAL+TP KIYCLGPELET+NYVVKNFA+YASDFM
Sbjct: 352 T-GKNFR-IPLSVSERLKNHNVMSCHRALITPTKIYCLGPELETANYVVKNFAEYASDFM 409
Query: 425 RVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSA 484
RVTFVEEDWSKL ANA+ST + G+FS+P++TKIY RIL+ILQ+GIVIGDK ++FLAFSA
Sbjct: 410 RVTFVEEDWSKLSANAISTGVHLGVFSRPFKTKIYDRILSILQNGIVIGDKRFKFLAFSA 469
Query: 485 SQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDV 544
SQLR+NSVWMFASNDEV AED+R WMGCF KIRS+SKCA+RMGQLFSSS TLVVPVQDV
Sbjct: 470 SQLRSNSVWMFASNDEVKAEDIREWMGCFKKIRSISKCASRMGQLFSSSMPTLVVPVQDV 529
Query: 545 EMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDR 604
E+I D+EV +DG YCFSDGIGKISL FARQVA+KCGL+H PSAFQIRYGGYKGV+AVDR
Sbjct: 530 EIIDDIEVKTDGINYCFSDGIGKISLPFARQVAEKCGLNHIPSAFQIRYGGYKGVVAVDR 589
Query: 605 NSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQ 664
NSF K+SLR SMLKFES+ RMLNVTKWSESMPCFLNREI++L STLG+KDEVFE MQ++Q
Sbjct: 590 NSFWKMSLRDSMLKFESKVRMLNVTKWSESMPCFLNREIVTLFSTLGIKDEVFERMQEEQ 649
Query: 665 LILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSD 724
L LLGKML NREAALD LQ L GV+SKNILV+ML Q EPNV+PYLSMML +H+EN LSD
Sbjct: 650 LCLLGKMLTNREAALDTLQSLGGVNSKNILVEML-QFDEPNVQPYLSMMLQAHYENLLSD 708
Query: 725 LKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVK 784
LKSRCRI+VPKGR+LIGC DETG LNYGQV++ + M + ELE DQS+F +VD++T+IV
Sbjct: 709 LKSRCRIFVPKGRILIGCLDETGTLNYGQVYLCIKMKKAELECADQSYFRKVDEETAIVI 768
Query: 785 GKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIF 844
GKV+VTKNPCLHPGDVRVLEAVYE +LEEK VDC++FP+KGERPHPNECSGGDLDGD F
Sbjct: 769 GKVVVTKNPCLHPGDVRVLEAVYEPQLEEKGLVDCLVFPEKGERPHPNECSGGDLDGDQF 828
Query: 845 FISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHA 904
FISWD DLIPC+TEPPMDYTGRR RIMDH+VTLEEI KFFVDYMINDTLGAISTAHLVHA
Sbjct: 829 FISWDKDLIPCQTEPPMDYTGRRPRIMDHEVTLEEIQKFFVDYMINDTLGAISTAHLVHA 888
Query: 905 DRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGV 964
DR+P KARS CL LATLHSMAVDFAKTGAPAEMP ALKP+EFPDFM+R +KP Y S GV
Sbjct: 889 DREPYKARSENCLALATLHSMAVDFAKTGAPAEMPRALKPREFPDFMQRGNKPMYTSSGV 948
Query: 965 LGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNAL 1024
LGKLYRAT++S +QIRS +W++++AE +YDHDLEV+GFE+ + VAE+HKEMYEE M+ L
Sbjct: 949 LGKLYRATINSTVQIRSKFVWTKEMAELAYDHDLEVNGFESLISVAETHKEMYEERMSLL 1008
Query: 1025 MNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSC-KE 1083
M+YY EDEILTGN+ N+A +L RDNRRYG+MK+RI+LS K+LQ EAKEWF SSC K
Sbjct: 1009 MSYYDVEYEDEILTGNMYNKAQFLLRDNRRYGEMKERIVLSVKDLQREAKEWFKSSCSKA 1068
Query: 1084 NEHPQLASAWYHVTYSPSYCKERMALLSFPWIVGDILLNIKSVN 1127
+EH +LASAWY+VTY P+Y +ERM LSFPWIVGDILL IKS N
Sbjct: 1069 DEHQKLASAWYYVTYHPNYFEERMNSLSFPWIVGDILLRIKSRN 1112
>gi|449440690|ref|XP_004138117.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Cucumis sativus]
gi|316989905|gb|ADU77018.1| RNA-dependent RNA polymerase 2 [Cucumis sativus]
Length = 1117
Score = 1620 bits (4194), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 771/1127 (68%), Positives = 933/1127 (82%), Gaps = 19/1127 (1%)
Query: 4 ATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSK 63
+T+ VSN+P++AIA+DLL FL SKLG +SVFA+EI T+R NWKSRG GRVQFT+L+ K+K
Sbjct: 7 STLRVSNVPESAIAQDLLNFLNSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTTLEAKAK 66
Query: 64 AQNLSLNDKLVFNSQNLKISETHSDIVPRPVKAQHRVEDGVLHVGVMCKEERLRVLQTFE 123
A +LS+ + LVF +QNL+ S + DIV RPV A +R E+GVLHVG M KEER+ VL+++E
Sbjct: 67 AMSLSVQNSLVFGTQNLRFSLINDDIVVRPVHATNRTENGVLHVGFMLKEERMSVLESWE 126
Query: 124 GVRGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFSLDE 183
GV+ W++P+RRR+EFW+W H E C+K+E++FE++LET G L E
Sbjct: 127 GVKAWIMPERRRIEFWIW--HEQE---------------CYKLEVMFEEILETTGHCLGE 169
Query: 184 GATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKSIGC 243
+L KLKY P+IY+K+SG ++AS+F S RY +C ED+D+ WVRTT+FS +S+G
Sbjct: 170 EKLNALLL-KLKYAPRIYKKISGSNMASRFSSTRYRLCIEDYDYLWVRTTEFSPMRSVGQ 228
Query: 244 STSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTTSEIVPLVKCRPGFNLSHE 303
STSF WE++ L ASDI + FPFYKE + D++LE+GEEFC+TSEIVPL+K G NL++E
Sbjct: 229 STSFCWEVEEDLQASDIFSCFPFYKETQKDIVLEDGEEFCSTSEIVPLIKSGLGSNLAYE 288
Query: 304 VLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSFVKTQL 363
V +QLNSLVH QK+SL AA+ +LI L L ++TAL VLQ+LH+LK +CYDP+SF+KTQL
Sbjct: 289 VEYQLNSLVHMQKISLSAANQDLIDFLCTLDIDTALNVLQRLHQLKFVCYDPLSFLKTQL 348
Query: 364 HVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDF 423
HV RNCKS+P SS KRL +NVM+CYR LVTP +IYCLGPELETSNYVVKNF+ YASDF
Sbjct: 349 HVYKRNCKSLPPSSQKRL-SNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFSSYASDF 407
Query: 424 MRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFS 483
MRVTFVEEDWSKLPA A++TSIQRGI SKPYRT+IY RI+T+L+DGIVIG K +EFLAFS
Sbjct: 408 MRVTFVEEDWSKLPAGAVTTSIQRGILSKPYRTEIYHRIMTVLRDGIVIGAKRFEFLAFS 467
Query: 484 ASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQD 543
ASQLR+NSVWMFAS+D + AE++R WMGCF KIRS+SKCAARMGQLFSSS QTLVVP +D
Sbjct: 468 ASQLRSNSVWMFASSDNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTRD 527
Query: 544 VEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVD 603
VE+IPD+EV +DG YCFSDGIGKISLSFARQVA KCG++H PSAFQIRYGGYKGVIAVD
Sbjct: 528 VEIIPDIEVNTDGIDYCFSDGIGKISLSFARQVADKCGVNHIPSAFQIRYGGYKGVIAVD 587
Query: 604 RNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQ 663
RNSFRKLSLR SMLKFES+N+MLNVTK +SMPC+LNREI +LLSTLGVKDE FEA+QQ+
Sbjct: 588 RNSFRKLSLRDSMLKFESKNKMLNVTKCCDSMPCYLNREIATLLSTLGVKDESFEALQQE 647
Query: 664 QLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLS 723
QL LL +ML +++ AL+VL+ +G DS NILV+ML GYEPN+EPYLSMML +H+ N S
Sbjct: 648 QLHLLKRMLTDKDVALNVLENFHGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFS 707
Query: 724 DLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIV 783
DL+SRCRI+VPKGR+L+GC DETGILNYGQV+ +T+T+ EL+S++Q++FH +D+ SI+
Sbjct: 708 DLRSRCRIFVPKGRILLGCLDETGILNYGQVYACITLTKSELQSRNQNYFHTIDETKSIL 767
Query: 784 KGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDI 843
GKV+VTKNPCLHPGDVRVLEA++ ++LEEK VDC+IFPQKG RPH NECSGGDLDGD+
Sbjct: 768 LGKVVVTKNPCLHPGDVRVLEAIFHVELEEKGLVDCLIFPQKGARPHTNECSGGDLDGDL 827
Query: 844 FFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVH 903
+FISWD +LIP +TE PMDYTGRR RIMDHDV LEEI KFFVDYMINDTLGAISTAHLVH
Sbjct: 828 YFISWDENLIPPKTEAPMDYTGRRPRIMDHDVKLEEIQKFFVDYMINDTLGAISTAHLVH 887
Query: 904 ADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFG 963
ADR+P KA S+KCL LA LHSMAVDFAKTGAPAEMP LKP+EFPDFMER DKP YIS
Sbjct: 888 ADREPKKALSAKCLELAALHSMAVDFAKTGAPAEMPRVLKPREFPDFMERFDKPMYISSN 947
Query: 964 VLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNA 1023
VLGKLYRA + SI Q RS +WSE+ A A YD+DLEVDGFEAFL +AE++KEMY E+M+
Sbjct: 948 VLGKLYRAAVKSIEQERSRLVWSEEAARAIYDYDLEVDGFEAFLEIAETYKEMYIEKMSI 1007
Query: 1024 LMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSCKE 1083
LMNYYGA EDEIL G+LR+RASYLQRDNR+YGDMKDRILLS KNL+ E KEWF +SC
Sbjct: 1008 LMNYYGAEYEDEILMGDLRSRASYLQRDNRKYGDMKDRILLSVKNLRKEVKEWFENSCDP 1067
Query: 1084 NEHPQLASAWYHVTYSPSYCKERMALLSFPWIVGDILLNIKSVNSRK 1130
+ASAWYHVTY PSY KE M SFPW V D+LLNIK++NS++
Sbjct: 1068 LNRRMMASAWYHVTYHPSYFKEDMFYFSFPWAVSDVLLNIKAMNSKR 1114
>gi|449518949|ref|XP_004166498.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Cucumis sativus]
Length = 1117
Score = 1619 bits (4192), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 771/1127 (68%), Positives = 934/1127 (82%), Gaps = 19/1127 (1%)
Query: 4 ATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSK 63
+T+ VSN+P++AIA+DLL FL SKLG +SVFA+EI T+R NWKSRG GRVQFT+L+ K+K
Sbjct: 7 STLRVSNVPESAIAQDLLNFLNSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTTLEAKAK 66
Query: 64 AQNLSLNDKLVFNSQNLKISETHSDIVPRPVKAQHRVEDGVLHVGVMCKEERLRVLQTFE 123
A +LS+ + LVF +QNL+ S + DIV RPV A +R E+GVLHVG M KEER+ VL+++E
Sbjct: 67 AMSLSVQNSLVFGTQNLRFSLINDDIVVRPVHATNRTENGVLHVGFMLKEERMSVLESWE 126
Query: 124 GVRGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFSLDE 183
GV+ W++P+RRR+EFW+W H E C+K+E++FE++LET G L E
Sbjct: 127 GVKAWIMPERRRIEFWIW--HEQE---------------CYKLEVMFEEILETTGHCLGE 169
Query: 184 GATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKSIGC 243
+L KLKY P+IY+K+SG ++AS+F S RY +C ED+D+ WVRTT+FS +S+G
Sbjct: 170 EKLNALLL-KLKYAPRIYKKISGSNMASRFSSTRYRLCIEDYDYLWVRTTEFSPMRSVGQ 228
Query: 244 STSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTTSEIVPLVKCRPGFNLSHE 303
STSF WE++ L ASDI + FPFYKE + D++LE+GEEFC+TSEIVPL+K G NL++E
Sbjct: 229 STSFCWEVEEDLQASDIFSCFPFYKETQKDIVLEDGEEFCSTSEIVPLIKSGLGSNLAYE 288
Query: 304 VLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSFVKTQL 363
V +QLNSLVH QK+SL AA+ +LI L L ++TAL VLQ+LH+LK +CYDP+SF+KTQL
Sbjct: 289 VEYQLNSLVHMQKISLSAANQDLIDFLCTLDIDTALNVLQRLHQLKFVCYDPLSFLKTQL 348
Query: 364 HVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDF 423
HV RNCKS+P SS KRL +NVM+CYR LVTP +IYCLGPELETSNYVVKNF+ YASDF
Sbjct: 349 HVYKRNCKSLPPSSQKRL-SNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFSSYASDF 407
Query: 424 MRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFS 483
MRVTFVEEDWSKLPA A++TSIQRGI SKPYRT+IY RI+T+L+DGIVIG K +EFLAFS
Sbjct: 408 MRVTFVEEDWSKLPAGAVTTSIQRGILSKPYRTEIYHRIMTVLRDGIVIGAKRFEFLAFS 467
Query: 484 ASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQD 543
ASQLR+NSVWMFAS+D + AE++R WMGCF KIRS+SKCAARMGQLFSSS QTLVVP +D
Sbjct: 468 ASQLRSNSVWMFASSDNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTRD 527
Query: 544 VEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVD 603
VE+IPD+EV +DG YCFSDGIGKISLSFARQVA KCG++H PSAFQIRYGGYKGVIAVD
Sbjct: 528 VEIIPDIEVNTDGIDYCFSDGIGKISLSFARQVADKCGVNHIPSAFQIRYGGYKGVIAVD 587
Query: 604 RNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQ 663
RNSFRKLSLR SMLKFES+N+MLNVTK +SMPC+LNREI +LLSTLGVKDE FEA+QQ+
Sbjct: 588 RNSFRKLSLRDSMLKFESKNKMLNVTKCCDSMPCYLNREIATLLSTLGVKDESFEALQQE 647
Query: 664 QLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLS 723
QL LL +ML +++ AL+VL+ +G DS NILV+ML GYEPN+EPYLSMML +H+ N S
Sbjct: 648 QLHLLKRMLTDKDVALNVLENFHGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFS 707
Query: 724 DLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIV 783
DL+SRCRI+VPKGR+L+GC DETGILNYGQV+ +T+T+ EL++++Q++FH +D+ SI+
Sbjct: 708 DLRSRCRIFVPKGRILLGCLDETGILNYGQVYACITLTKSELQNRNQNYFHTIDETKSIL 767
Query: 784 KGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDI 843
GKV+VTKNPCLHPGDVRVLEA++ ++LEEK VDC+IFPQKG RPH NECSGGDLDGD+
Sbjct: 768 LGKVVVTKNPCLHPGDVRVLEAIFHVELEEKGLVDCLIFPQKGARPHTNECSGGDLDGDL 827
Query: 844 FFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVH 903
+FISWD +LIP +TE PMDYTGRR RIMDHDV LEEI KFFVDYMINDTLGAISTAHLVH
Sbjct: 828 YFISWDENLIPPKTEAPMDYTGRRPRIMDHDVKLEEIQKFFVDYMINDTLGAISTAHLVH 887
Query: 904 ADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFG 963
ADR+P KA S+KCL LA LHSMAVDFAKTGAPAEMP LKP+EFPDFMER DKP YIS
Sbjct: 888 ADREPKKALSAKCLELAALHSMAVDFAKTGAPAEMPRVLKPREFPDFMERFDKPMYISSN 947
Query: 964 VLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNA 1023
VLGKLYRA + SI Q RS +WSE+ A A YD+DLEVDGFEAFL +AE++KEMY E+M+
Sbjct: 948 VLGKLYRAAVKSIEQERSRLVWSEEAARAIYDYDLEVDGFEAFLEIAETYKEMYIEKMSI 1007
Query: 1024 LMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSCKE 1083
LMNYYGA EDEIL G+LR+RASYLQRDNR+YGDMKDRILLS KNL+ E KEWF +SC
Sbjct: 1008 LMNYYGAEYEDEILMGDLRSRASYLQRDNRKYGDMKDRILLSVKNLRKEVKEWFENSCDP 1067
Query: 1084 NEHPQLASAWYHVTYSPSYCKERMALLSFPWIVGDILLNIKSVNSRK 1130
+ASAWYHVTY PSY KE M LSFPW V D+LLNIK++NS++
Sbjct: 1068 LNRRMMASAWYHVTYHPSYFKEDMFYLSFPWAVSDVLLNIKAMNSKR 1114
>gi|225457089|ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [Vitis vinifera]
gi|297733815|emb|CBI15062.3| unnamed protein product [Vitis vinifera]
Length = 1127
Score = 1605 bits (4157), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 769/1127 (68%), Positives = 920/1127 (81%), Gaps = 19/1127 (1%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKA 64
TV VSNIP+TAIAK+L FLESKLG N+++ALEI T+ NWKSRG GRVQF +L K A
Sbjct: 8 TVKVSNIPKTAIAKELWSFLESKLGPNTIYALEIATEHKNWKSRGFGRVQFETLQAKRAA 67
Query: 65 QNLSLNDKLVFNSQNLKISETHSDIVPRPVKAQHRVEDGVLHVGVMCKEERLRVLQTFEG 124
LSL LVF +L IS T DI+ RPV+ +++V+ GVLHVG + +++ + VL+++EG
Sbjct: 68 DLLSLQGDLVFRGSSLSISATFDDIIVRPVEPRNQVDSGVLHVGFLVEDDCMLVLESWEG 127
Query: 125 VRGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFSLDEG 184
V+ ++P+R R+EFWV +GE +K+E+ F+DVLE+ L G
Sbjct: 128 VKTLVMPERNRVEFWV--DKDGER---------------YKLEVPFDDVLESSACCLG-G 169
Query: 185 ATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKSIGCS 244
VN +L KLKY PKI+QK +GP++ASKF +DRYHI KED +F W+RTTDFS KS+G S
Sbjct: 170 GKVNALLLKLKYAPKIFQKFAGPNIASKFSADRYHISKEDAEFLWLRTTDFSSIKSLGQS 229
Query: 245 TSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTTSEIVPLVKCRPGFNLSHEV 304
TSF WEIK G A DI FP+YK D T+L LE+GE FC+ S +VPLVKC G L++E+
Sbjct: 230 TSFCWEIKEGFPALDIFASFPYYK-DLTELTLEQGEGFCSDSGLVPLVKCESGPKLAYEI 288
Query: 305 LFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSFVKTQLH 364
LFQLNSLVH QK+SL A D +LI+ILS L ++TA+M+LQKLHK KS YDP+SF+K Q H
Sbjct: 289 LFQLNSLVHAQKISLAAVDTDLIEILSNLPVDTAIMILQKLHKRKSTRYDPISFIKAQAH 348
Query: 365 VLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFM 424
++ N K++P SSH RL ++NVMSC+R LVTP KIYCLGPELE+SNYVVK++A YASDF+
Sbjct: 349 IINMNIKNLPPSSHSRLTNNNVMSCHRVLVTPSKIYCLGPELESSNYVVKHYAAYASDFV 408
Query: 425 RVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSA 484
RV+FVEEDWSKLP+NALS SI++ F+ P+RT+IY RIL+IL++GIVIG K ++FLAFSA
Sbjct: 409 RVSFVEEDWSKLPSNALSMSIRKAFFADPFRTEIYHRILSILREGIVIGAKRFQFLAFSA 468
Query: 485 SQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDV 544
SQLR+NSVWMFASND+V +D+R WMGCF KIRSVSKCAARMGQLFSSS QTL VPVQDV
Sbjct: 469 SQLRSNSVWMFASNDKVRVDDIREWMGCFKKIRSVSKCAARMGQLFSSSVQTLPVPVQDV 528
Query: 545 EMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDR 604
E+IPD+EVTSDG YCFSDGIGKISLSFA+QVAQKCGL TPSAFQIRYGGYKGVIAVDR
Sbjct: 529 EVIPDIEVTSDGFGYCFSDGIGKISLSFAKQVAQKCGLHQTPSAFQIRYGGYKGVIAVDR 588
Query: 605 NSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQ 664
NSFRKLSLR SMLKFES+NRMLNVTKWSES PC+LNREI+SLLSTLGV+DE FEA+ +Q
Sbjct: 589 NSFRKLSLRSSMLKFESQNRMLNVTKWSESTPCYLNREIVSLLSTLGVEDENFEALLNEQ 648
Query: 665 LILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSD 724
+ LL KML NR+AALDVL+ + G+D+KNIL KMLLQGYEPNVEPYLSMML ++ E+QLSD
Sbjct: 649 MHLLDKMLTNRQAALDVLESMGGIDNKNILAKMLLQGYEPNVEPYLSMMLQAYRESQLSD 708
Query: 725 LKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVK 784
+++RCRI+VPK R+LIGC DETGILNYGQV+VRVTMT+ E + ++QSFF +VDD TS+V
Sbjct: 709 IRTRCRIFVPKARVLIGCLDETGILNYGQVYVRVTMTKAEHKCRNQSFFQKVDDTTSVVI 768
Query: 785 GKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIF 844
GKV+VTKNPCLHPGD+RVL+AVYE++LEEK VDCI+FPQKGERPHPNECSGGDLDGD F
Sbjct: 769 GKVIVTKNPCLHPGDIRVLDAVYEVELEEKGLVDCILFPQKGERPHPNECSGGDLDGDQF 828
Query: 845 FISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHA 904
FI WD LIP +TE PMDYT RR RIMDHDVTLEEI KFFVDYMINDTLG ISTAHLVHA
Sbjct: 829 FICWDEGLIPSQTEAPMDYTSRRPRIMDHDVTLEEIQKFFVDYMINDTLGVISTAHLVHA 888
Query: 905 DRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGV 964
DR+P+KARS KCL LATLHSMAVDFAKTGAPAEMP LKPKEFPDFMER DKP YIS G
Sbjct: 889 DREPEKARSKKCLELATLHSMAVDFAKTGAPAEMPRVLKPKEFPDFMERVDKPMYISNGA 948
Query: 965 LGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNAL 1024
LGKLYRAT+ S + +S+ +WS I A+YDHDLEVDGFE FL +A+ HKEMY E+M L
Sbjct: 949 LGKLYRATIASRVNEKSSFVWSGTIPGAAYDHDLEVDGFETFLEIAKLHKEMYAEKMATL 1008
Query: 1025 MNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSCKEN 1084
MN+YGA +EDE+LTGNLRN+ YLQRDNRR+ +MKDRIL+S K+LQ EAKEW SCK +
Sbjct: 1009 MNFYGAESEDEMLTGNLRNKLMYLQRDNRRFTEMKDRILISVKSLQKEAKEWLYGSCKPH 1068
Query: 1085 EHPQLASAWYHVTYSPSYCKERMALLSFPWIVGDILLNIKSVNSRKA 1131
+H ++ASAWYHVTY ++ + LSFPWIVG++LL IKS NSRKA
Sbjct: 1069 QHQKMASAWYHVTYHSTFSSQTPNFLSFPWIVGEVLLVIKSANSRKA 1115
>gi|356513586|ref|XP_003525493.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Glycine max]
Length = 1262
Score = 1573 bits (4073), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 763/1129 (67%), Positives = 906/1129 (80%), Gaps = 24/1129 (2%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKA 64
TV VSNIPQ+A AKDLL FLES +G ++VFALEI +D NWKSRG GRVQF +LD +S+A
Sbjct: 12 TVRVSNIPQSATAKDLLDFLESTVGPSTVFALEIFSDNPNWKSRGFGRVQFETLDARSRA 71
Query: 65 QNLSLNDKLVFNSQNLKISETHSDIVPRPVKAQHRVEDGVLHVGVMCKEERLRVLQTFEG 124
+LS + L+F+ L++SET +DI+ RP QHR+ +GVL+ G + + R+ VL+++EG
Sbjct: 72 LSLSQLNHLLFHRHFLRLSETDADIIFRP---QHRLHNGVLYAGFVLSDHRMSVLESWEG 128
Query: 125 VRGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFSLDEG 184
V GW+LP R+RL+FWVW HNG+ C+++E LFED+LE+ G+ L E
Sbjct: 129 VAGWVLPLRKRLDFWVW--HNGD---------------CYRLEFLFEDILESHGYCLGED 171
Query: 185 ATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKSIGCS 244
A +N +L K+K+GP+IY+K +G VA+KF DRY CKEDF+F WVRTTDFS KSIG S
Sbjct: 172 AKLNALLLKMKFGPRIYKKKTGADVAAKFRGDRYRFCKEDFEFLWVRTTDFSPLKSIGHS 231
Query: 245 TSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTTSEIVPLVKCRPGFNLSHEV 304
TSF WEI LA D+ FP YKE+ DL LE+GEEFC+++E VPLVK L +E
Sbjct: 232 TSFCWEIVEEHLALDVFKSFPLYKENLRDLALEDGEEFCSSTEAVPLVKRASQSKLPYEA 291
Query: 305 LFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSFVKTQLH 364
LFQLNSLVH QK+SL + D ELI +L+GL ET ++ KLHK+ CY+P+ FVKTQLH
Sbjct: 292 LFQLNSLVHTQKISLASVDDELIDLLAGLDEETRAVIFLKLHKMSFTCYEPLKFVKTQLH 351
Query: 365 VLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFM 424
VL K +P SS KRL D N+MSC+RAL+TP KIYCLGPELETSN+VVK+FA +ASDFM
Sbjct: 352 VLSNKKKGLPQSSQKRLTDSNIMSCHRALITPTKIYCLGPELETSNHVVKHFASHASDFM 411
Query: 425 RVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSA 484
R+TFVEE+W+KLP NA+ST +Q+G+FSKP +T+IY RILTIL+DGIVIG K +EFLAFSA
Sbjct: 412 RITFVEENWNKLPTNAVSTGVQKGLFSKPLKTEIYKRILTILRDGIVIGSKRFEFLAFSA 471
Query: 485 SQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDV 544
SQLR+NSVW+FASND + A D+R WMGCFN IRSVSKCAARMGQLFSSS QT V QDV
Sbjct: 472 SQLRSNSVWLFASNDNLKAADIREWMGCFNNIRSVSKCAARMGQLFSSSMQTFEVVSQDV 531
Query: 545 EMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDR 604
E+IPDVEV SDG +YCFSDGIGKIS SFARQVAQK L HTPSAFQIRYGG+KGVIAVDR
Sbjct: 532 EIIPDVEVISDGVSYCFSDGIGKISQSFARQVAQKLKLDHTPSAFQIRYGGFKGVIAVDR 591
Query: 605 NSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQ 664
SFRKLSLR SMLKFES+N ML VTKWSESMPCFLNREIISLLSTLGVKDEV AMQ Q
Sbjct: 592 RSFRKLSLRSSMLKFESKNSMLCVTKWSESMPCFLNREIISLLSTLGVKDEVLLAMQHDQ 651
Query: 665 LILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSD 724
L LLG+ML + +AAL+VL+ LNG DSK+ILVKML + EPN EPYLSMML +++ QLSD
Sbjct: 652 LDLLGRMLTDSKAALEVLESLNGADSKSILVKMLHEFNEPNSEPYLSMMLKAYYAYQLSD 711
Query: 725 LKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRV--DDKTSI 782
LKSRCRI+VPKGR+L+GC DETG+LNYGQVFVR+T+T+ + D++ +V DD T I
Sbjct: 712 LKSRCRIFVPKGRVLVGCLDETGLLNYGQVFVRITVTKTREKFGDEN-LRKVDGDDNTCI 770
Query: 783 VKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGD 842
+ GKV+VTKNPCLHPGD+RVL+A+Y +LEEK DC++FPQKG RPHPNECSGGDLDGD
Sbjct: 771 IVGKVVVTKNPCLHPGDIRVLDAIYSEELEEKGLRDCLVFPQKGHRPHPNECSGGDLDGD 830
Query: 843 IFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLV 902
+FFISWD DLIPC+TE PMDYTGRR RIMDH VTLEEI +FFVDYMINDTLGAISTAHLV
Sbjct: 831 LFFISWDKDLIPCQTEAPMDYTGRRPRIMDHKVTLEEIQQFFVDYMINDTLGAISTAHLV 890
Query: 903 HADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISF 962
HADR+ DKA+S KCL LA LHSMAVDFAKTGAPA MP LKP+EFPDFMER DKP YIS
Sbjct: 891 HADREQDKAKSRKCLELAELHSMAVDFAKTGAPAAMPRVLKPREFPDFMERVDKPMYISK 950
Query: 963 GVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMN 1022
GVLGKLYRA ++S MQIR + +WSEK AE +YD LEV+GFEAFL A +HKEMY E+M+
Sbjct: 951 GVLGKLYRAIIESQMQIRYSFVWSEKHAEEAYDRSLEVNGFEAFLETASTHKEMYAEKMS 1010
Query: 1023 ALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSCK 1082
+LM++YGA TEDE+L GNL+NRASYLQRDNRRYGDMKDRILLS KNLQ EAKEWF +SC+
Sbjct: 1011 SLMDFYGAETEDEMLLGNLQNRASYLQRDNRRYGDMKDRILLSVKNLQREAKEWFETSCE 1070
Query: 1083 ENEHPQLASAWYHVTYSPS-YCKERMALLSFPWIVGDILLNIKSVNSRK 1130
+E+ +ASAWYHVTY PS YC+E LSFPWIVG+ILL I+SV K
Sbjct: 1071 PHEYKPMASAWYHVTYHPSYYCRESPCFLSFPWIVGEILLQIRSVQRIK 1119
>gi|357477317|ref|XP_003608944.1| Rna-dependent RNA polymerase [Medicago truncatula]
gi|355509999|gb|AES91141.1| Rna-dependent RNA polymerase [Medicago truncatula]
Length = 1308
Score = 1556 bits (4029), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 742/1126 (65%), Positives = 905/1126 (80%), Gaps = 20/1126 (1%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKA 64
TV V+NIP TA A DLL +LE+ +G++SVFALEI +D +NWKSRG+GRVQF +L+ KSKA
Sbjct: 10 TVRVTNIPHTATANDLLRYLETTVGRSSVFALEIFSDYTNWKSRGVGRVQFETLEAKSKA 69
Query: 65 QNLSLNDKLVFNSQNLKISETHSDIVPRPVKAQHRVEDGVLHVGVMCKEERLRVLQTFEG 124
L+ N KL+ +S L + + DI+PRP ++R+ +G L+ G + + VLQ++EG
Sbjct: 70 LTLAENKKLLLSSHFLCLDASSDDIIPRPALPRNRINNGALYAGFPIGPDCMSVLQSWEG 129
Query: 125 VRGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFSLDEG 184
VRGW++P+R+RL+FWV D CFK+EI FE++LE G+ DEG
Sbjct: 130 VRGWVMPERQRLDFWV-----------------THGDQCFKLEIPFENILECDGYCSDEG 172
Query: 185 ATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKSIGCS 244
+ N +L KL+YGP+IYQK++GP+VA+KF DRY CKE+F+F WVRTTDFS KSIG S
Sbjct: 173 SKPNALLLKLRYGPRIYQKMAGPNVAAKFKDDRYRFCKENFEFMWVRTTDFSTLKSIGHS 232
Query: 245 TSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTTSEIVPLVKCRPGFNLSHEV 304
TSFFWEI SD+ FP Y+E+ DL LE+GE+FC+ +E VPLVKCR L +E
Sbjct: 233 TSFFWEIVEESFDSDVFRSFPLYRENLKDLSLEDGEKFCSPTETVPLVKCRLDSKLPYES 292
Query: 305 LFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSFVKTQLH 364
LFQLNSLVH QK+SL + + ELI +L+ L ET ++ QKLHK+ S CY+P+ +V+TQLH
Sbjct: 293 LFQLNSLVHTQKISLASVNDELIDLLASLDAETKAVIFQKLHKMNSTCYEPLKYVRTQLH 352
Query: 365 VLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFM 424
VL KS+ S KRL+D+N+MSC+RAL+TP KIYCLGPELETSN+VVK+FA YASDFM
Sbjct: 353 VLSIKKKSVLPSQQKRLVDNNIMSCHRALITPSKIYCLGPELETSNHVVKHFAAYASDFM 412
Query: 425 RVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSA 484
R+TFVEEDWSKLP NA+S ++++G+FS+P RT+IY R+L IL+DGI+IG K +EFLAFSA
Sbjct: 413 RITFVEEDWSKLPNNAISITLKKGMFSRPLRTEIYKRVLNILRDGILIGSKRFEFLAFSA 472
Query: 485 SQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDV 544
SQLR+NSVW+FASND+V A D+R WMG FN IRSVSKCAARMGQLFSSS+QT + QDV
Sbjct: 473 SQLRSNSVWLFASNDKVKAADIREWMGSFNNIRSVSKCAARMGQLFSSSRQTFEMAPQDV 532
Query: 545 EMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGL--SHTPSAFQIRYGGYKGVIAV 602
++IPD+E+TSDG YCFSDGIGKIS SFARQ+A+K L + PSAFQIRYGGYKGVIAV
Sbjct: 533 DLIPDIEITSDGIDYCFSDGIGKISQSFARQLAEKLKLDENRIPSAFQIRYGGYKGVIAV 592
Query: 603 DRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQ 662
DR+SF+KLSLR+SMLKFES+NRML VTKWSESMPCFLNREIISLLSTLG+KDE A+Q+
Sbjct: 593 DRHSFKKLSLRKSMLKFESKNRMLCVTKWSESMPCFLNREIISLLSTLGIKDEALLALQE 652
Query: 663 QQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQL 722
QL LLGKML ++EAALDVL+ LNG DS +ILVKML + YEPN EPYLSMML +H+ QL
Sbjct: 653 DQLQLLGKMLTDKEAALDVLESLNGADSNSILVKMLHRFYEPNSEPYLSMMLKAHYTYQL 712
Query: 723 SDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFH-RVDDKTS 781
SDLKSRCRI+VPKGR+LIGC DETG+LNYGQVFVR+T+ + + + D++ + DD T
Sbjct: 713 SDLKSRCRIFVPKGRVLIGCLDETGLLNYGQVFVRITVAKTKEKFGDENLRNVDGDDSTR 772
Query: 782 IVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDG 841
I+ GKV+VTKNPCLHPGD+RVL+AVY +LEEK DC++FPQKG RPHPNECSGGDLDG
Sbjct: 773 IIVGKVVVTKNPCLHPGDIRVLDAVYSEELEEKGLRDCLVFPQKGHRPHPNECSGGDLDG 832
Query: 842 DIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHL 901
D+FFISWD DLIP +TE PMDYTGRR RIMDH VTLEEIH+FFVDYMINDTLGAISTAHL
Sbjct: 833 DLFFISWDKDLIPAQTENPMDYTGRRPRIMDHKVTLEEIHQFFVDYMINDTLGAISTAHL 892
Query: 902 VHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYIS 961
VHADR+ DKA+S KCL LA LHSMAVDFAKTGAPAEMP +LKP+EFPDFMER +KP YIS
Sbjct: 893 VHADREHDKAKSRKCLELAELHSMAVDFAKTGAPAEMPRSLKPREFPDFMERFEKPMYIS 952
Query: 962 FGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEM 1021
GVLGKLYRAT+DS +Q+R + + SEK A+ +YDH LEVDGFE FL A SH++MY ++M
Sbjct: 953 KGVLGKLYRATIDSNLQVRFDMVMSEKFAKEAYDHQLEVDGFEVFLETALSHRDMYAQKM 1012
Query: 1022 NALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSC 1081
+LM++YGA+TEDE+LTGNL+NRASYLQRDNRRYGDMKDRIL+S K+LQ EAKEWF S C
Sbjct: 1013 ISLMSFYGATTEDEMLTGNLQNRASYLQRDNRRYGDMKDRILISVKDLQLEAKEWFESDC 1072
Query: 1082 KENEHPQLASAWYHVTYSPSYCKERMALLSFPWIVGDILLNIKSVN 1127
+ +E+ +ASAWYHVTY P Y E LSFPWIVGDILL+IKS N
Sbjct: 1073 QPHEYQLMASAWYHVTYHPKYYIESSTFLSFPWIVGDILLHIKSAN 1118
Score = 167 bits (424), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 83/117 (70%), Positives = 95/117 (81%)
Query: 870 IMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDF 929
I+ H + +IHKFFVDYMI DTLGAISTAHLVHAD + +KA+S KCL LA LHSMAVDF
Sbjct: 1110 ILLHIKSANKIHKFFVDYMIKDTLGAISTAHLVHADCESNKAKSRKCLELAELHSMAVDF 1169
Query: 930 AKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWS 986
AKTGA AEMP LKPKEFPDFMER +KP Y+S GVLGKLYRA ++S MQ+ SN + S
Sbjct: 1170 AKTGALAEMPRVLKPKEFPDFMERFEKPMYVSKGVLGKLYRALVESTMQLTSNFVSS 1226
>gi|356565022|ref|XP_003550744.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Glycine max]
Length = 1120
Score = 1555 bits (4025), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 757/1127 (67%), Positives = 897/1127 (79%), Gaps = 24/1127 (2%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKA 64
TV VSNIPQ+A AKDLL FLES LG ++VFALEI +D NWKSRG GRVQF +LD +S+A
Sbjct: 11 TVRVSNIPQSATAKDLLDFLESTLGSSTVFALEIFSDNPNWKSRGFGRVQFETLDARSRA 70
Query: 65 QNLSLNDKLVFNSQNLKISETHSDIVPRPVKAQHRVEDGVLHVGVMCKEERLRVLQTFEG 124
+LS ++L+FN L++SET SDI+ RP QHR+++GVL+ G M + R+ VL+++EG
Sbjct: 71 LSLSQLNQLLFNRHFLRLSETDSDIIFRP---QHRLQNGVLYAGFMLSDHRMSVLESWEG 127
Query: 125 VRGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFSLDEG 184
+ GW+LP R+RL+FWVW HNG+ C+++E LFED+LE+ G+ L E
Sbjct: 128 IAGWVLPQRKRLDFWVW--HNGD---------------CYRLEFLFEDILESHGYCLGED 170
Query: 185 ATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKSIGCS 244
A +N +L K+K+GP+IY+K +G VA+ F DRY KEDF+F WVRTTDFS KSIG S
Sbjct: 171 ARLNALLLKMKFGPRIYKKKTGTDVAANFRGDRYRFLKEDFEFLWVRTTDFSPLKSIGHS 230
Query: 245 TSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTTSEIVPLVKCRPGFNLSHEV 304
TSF WEI LASD+ FP YKE+ DL LE+ EE C+ +E VPLVK L +E
Sbjct: 231 TSFCWEIVEEHLASDVFTSFPLYKENLRDLALEDREELCSLTEAVPLVKHATQSKLPYEA 290
Query: 305 LFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSFVKTQLH 364
+FQLNSLVH QK+SL + D ELI +L+ L ET +V QKLHK+ CY+P+ FVKTQLH
Sbjct: 291 VFQLNSLVHTQKISLASVDDELIDLLADLDEETRAVVFQKLHKMSFTCYEPLKFVKTQLH 350
Query: 365 VLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFM 424
VL K + S RL D N+MSC+RAL+TP KIYCLGPELETSN+VVK+FA ASDFM
Sbjct: 351 VLSNKKKGLLQSPQNRLTDSNIMSCHRALITPTKIYCLGPELETSNHVVKHFASLASDFM 410
Query: 425 RVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSA 484
R+TFVEE+W+KLP NA+ST +Q+GIFSKP +T+IY RILTIL+DGIVIG K +EFLAFSA
Sbjct: 411 RITFVEENWNKLPTNAVSTGVQKGIFSKPLKTEIYKRILTILRDGIVIGSKRFEFLAFSA 470
Query: 485 SQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDV 544
SQLR+NSVW+FASND + A D+R WMGCFN IRSVSKCAARMGQLFSSS QT V +DV
Sbjct: 471 SQLRSNSVWLFASNDNLKAADIREWMGCFNNIRSVSKCAARMGQLFSSSMQTFEVASEDV 530
Query: 545 EMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDR 604
EMIPD+EVTSDG +YCFSDGIGKIS FARQVAQK L HTPSAFQIRYGG+KGVIA+DR
Sbjct: 531 EMIPDIEVTSDGVSYCFSDGIGKISQCFARQVAQKLNLDHTPSAFQIRYGGFKGVIAIDR 590
Query: 605 NSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQ 664
+SFRKLSLR SMLKFES NRML VTKWSESMPCFLNREIISLL+TLGVKDEV AMQQ Q
Sbjct: 591 HSFRKLSLRSSMLKFESNNRMLCVTKWSESMPCFLNREIISLLTTLGVKDEVLLAMQQDQ 650
Query: 665 LILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSD 724
L LLG+ML + +AALDVL+ LNG DSK+ILVKML + EPN EPYLSMML +++ QLSD
Sbjct: 651 LDLLGRMLTDSKAALDVLESLNGADSKSILVKMLHEFNEPNSEPYLSMMLKAYYAYQLSD 710
Query: 725 LKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRV--DDKTSI 782
LKSRCRI+VPKGR+L+GC DETG+LNYGQVFVR+T+ + D++ +V DD T I
Sbjct: 711 LKSRCRIFVPKGRVLVGCLDETGLLNYGQVFVRITVAKTRENFGDEN-LRKVDGDDSTRI 769
Query: 783 VKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGD 842
+ GKV+VTKNPCLHPGD+RVL+A+Y +LEE DC++FPQKG RPHPNECSGGDLDGD
Sbjct: 770 IVGKVVVTKNPCLHPGDIRVLDAIYSKELEENGLRDCLVFPQKGHRPHPNECSGGDLDGD 829
Query: 843 IFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLV 902
+FF+SWD DLIPC+TE PMDYTGRR RIMDH VTLEEI +FFVDYMINDTLGAISTAHLV
Sbjct: 830 LFFLSWDKDLIPCQTEAPMDYTGRRPRIMDHKVTLEEIQQFFVDYMINDTLGAISTAHLV 889
Query: 903 HADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISF 962
HADR+ DKA+S KCL LA LHSMAVDFAKTGAPA MP LKP+EFPDFMER DKP YIS
Sbjct: 890 HADREQDKAKSRKCLELAELHSMAVDFAKTGAPAAMPRVLKPREFPDFMERVDKPMYISK 949
Query: 963 GVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMN 1022
GVLGKLY A ++S MQIR + +WSEK AE +YD LEV+GFEAFL A +HKEMY E+M+
Sbjct: 950 GVLGKLYHAIIESQMQIRYSFVWSEKHAEEAYDRSLEVNGFEAFLETASTHKEMYAEKMS 1009
Query: 1023 ALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSCK 1082
+LM++YGA TEDE+L GN++NRASYLQRDNRRYGDMKDRILLS KNLQ EAKEWF +SC+
Sbjct: 1010 SLMDFYGAETEDEMLLGNVQNRASYLQRDNRRYGDMKDRILLSVKNLQREAKEWFETSCQ 1069
Query: 1083 ENEHPQLASAWYHVTYSPS-YCKERMALLSFPWIVGDILLNIKSVNS 1128
E+ +ASAWYHVTY S YC+E LSFPWIVGDILL I+SVNS
Sbjct: 1070 PREYKPMASAWYHVTYHRSHYCQESPCFLSFPWIVGDILLQIRSVNS 1116
>gi|297809335|ref|XP_002872551.1| RNA-dependent RNA polymerase 2 [Arabidopsis lyrata subsp. lyrata]
gi|297318388|gb|EFH48810.1| RNA-dependent RNA polymerase 2 [Arabidopsis lyrata subsp. lyrata]
Length = 1134
Score = 1511 bits (3913), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 720/1132 (63%), Positives = 892/1132 (78%), Gaps = 25/1132 (2%)
Query: 4 ATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSK 63
+T+ +SN+PQT +A +LL FLE LG+++VFALEI+T R NWK R RVQFT+L+ KS+
Sbjct: 10 STLKISNVPQTIVADELLRFLELNLGEDTVFALEILTTRDNWKPRDFARVQFTTLEVKSR 69
Query: 64 AQNLSLNDKLVFNSQNLKISETHSDIVPRPVKAQHRVEDGVLHVGV-MCKEERLRVLQTF 122
AQ LS KL+F + NL++SE + DI+PRPV + R++D VL VG E+R L+ +
Sbjct: 70 AQLLSSQSKLLFKTHNLRLSEAYDDIIPRPVDPRRRLDDIVLTVGFPESDEKRFCALEKW 129
Query: 123 EGVRGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFSLD 182
+GVR W+L ++RRLEFWVW NGE C+K+E+ FED++ET+ ++
Sbjct: 130 DGVRCWILEEKRRLEFWVW--ENGE---------------CYKIEVRFEDIVETLCCCVN 172
Query: 183 EGAT-VNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKSI 241
A+ N L KLKYGPK++++VSGPH+A+KF SDRY CKEDFDF W+RTTDFS KSI
Sbjct: 173 GDASETNAFLLKLKYGPKVFKRVSGPHIATKFKSDRYQFCKEDFDFMWIRTTDFSGLKSI 232
Query: 242 GCSTSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTTSEIVPLVKCRP-GFNL 300
G ST F E+ NG D+ + P+Y+E+ L +G+ F + S+IVPL+ G
Sbjct: 233 GTSTCFCLEVHNGSTMLDVFSGLPYYREETLSLTFVDGKNFASVSQIVPLLNAAILGLEF 292
Query: 301 SHEVLFQLNSLVHNQKVSLVAA-DAELIQILSGLSMETALMVLQKLHKLKSICYDPVSFV 359
+E+LFQLN+LVH QK+SL AA + ELI I GLS+ET L++L+KLH+ SICYDP+ FV
Sbjct: 293 PYEILFQLNALVHAQKISLFAASNMELINIFRGLSLETTLVILKKLHQQSSICYDPLFFV 352
Query: 360 KTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKY 419
KTQ+ + + K P S++KRL + N+MSC RA VTP KIY LGPELET+NYVVKNFA++
Sbjct: 353 KTQMQSVVKKMKHSPASAYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEH 412
Query: 420 ASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEF 479
SDFMRVTFVEEDWSKLPANAL+ + + G F KP+RT IY+R+L+IL +GI +G K +EF
Sbjct: 413 VSDFMRVTFVEEDWSKLPANALTVNSKEGYFVKPFRTNIYNRVLSILGEGITVGPKRFEF 472
Query: 480 LAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVV 539
LAFSASQLR NSVWMFASN+++ AED+R WMGCF KIRS+SKCAARMGQLFS+S+QTL V
Sbjct: 473 LAFSASQLRGNSVWMFASNEKIKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLNV 532
Query: 540 PVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGV 599
QDVE IPD+EVT+DG YCFSDGIGKISL+FA+QVAQKCGLSH PSAFQIRYGGYKGV
Sbjct: 533 RAQDVEQIPDIEVTTDGADYCFSDGIGKISLAFAKQVAQKCGLSHVPSAFQIRYGGYKGV 592
Query: 600 IAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEA 659
IAVDR+SFRK+SLR SMLKF+S NRMLNVT+W+ESMPCFLNREII LLSTLG++D VFEA
Sbjct: 593 IAVDRSSFRKMSLRDSMLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAVFEA 652
Query: 660 MQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHE 719
MQ L +LG ML +R+AAL+VLQKL+G +SKN+LVKMLLQGY P+ EPYLSMML HHE
Sbjct: 653 MQAVHLSMLGNMLEDRDAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHE 712
Query: 720 NQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDK 779
+QLS+LKSRCRI VPKGR+LIGC DE GIL YGQVFVRVT+T+ EL+S++QS+FH++D++
Sbjct: 713 SQLSELKSRCRILVPKGRILIGCMDEMGILEYGQVFVRVTLTKAELKSREQSYFHKIDEE 772
Query: 780 TSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDL 839
TS+V GKV+VTKNPCLHPGD+RVL+A+YE+ EEK ++DCIIFPQKGERPHPNECSGGDL
Sbjct: 773 TSVVIGKVVVTKNPCLHPGDIRVLDAIYEVNFEEKGFLDCIIFPQKGERPHPNECSGGDL 832
Query: 840 DGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTA 899
DGD FF+SWD LIP + +PPMDY G R RIMDHDVTLEEIHKFFVDYMI+DTLG ISTA
Sbjct: 833 DGDQFFVSWDEKLIPSQMDPPMDYAGSRPRIMDHDVTLEEIHKFFVDYMISDTLGVISTA 892
Query: 900 HLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRY 959
HLVHADRDP+KARS KCL LA LHS AVDFAKTGAPAEMP ALKP+EFPDF+ER +KP Y
Sbjct: 893 HLVHADRDPEKARSQKCLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTY 952
Query: 960 ISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEE 1019
IS V GKLYRA S+ Q + A E +YD LE GFE+F+ A++H++MY E
Sbjct: 953 ISESVFGKLYRAVRSSLAQRKPEA---ESDGTLTYDATLEEAGFESFIETAKAHRDMYAE 1009
Query: 1020 EMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGS 1079
++ +LM YYGA E+EILTG L+ + YL RDNRRYGDMKDRI LS K+L EA WF
Sbjct: 1010 KLTSLMIYYGAVNEEEILTGILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGWFDK 1069
Query: 1080 SCK-ENEHPQLASAWYHVTYSPSYCKERMALLSFPWIVGDILLNIKSVNSRK 1130
SC+ E + +LASAWY+VTY+PS+ E++ LSFPWIVGD+LL+IK+ N+++
Sbjct: 1070 SCEDEQQKKKLASAWYYVTYNPSHRDEKLTFLSFPWIVGDVLLDIKAENAQR 1121
>gi|51989474|gb|AAU21243.1| putative RNA-dependent RNA polymerase RdRP2 [Nicotiana benthamiana]
Length = 1120
Score = 1503 bits (3892), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 722/1129 (63%), Positives = 899/1129 (79%), Gaps = 18/1129 (1%)
Query: 2 VLATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFK 61
V ATV VSNIPQTAIAK L F ES +GK SVFA +I ++ NWKSRG GRVQF + K
Sbjct: 7 VTATVRVSNIPQTAIAKQLFDFFESSIGKGSVFACDIFSEHKNWKSRGHGRVQFETSQSK 66
Query: 62 SKAQNLSLNDKLVFNSQNLKISETHSDIVPRPVKAQHRVEDGVLHVGVMCKEERLRVLQT 121
++ +LS KLVF L ++ + DI+ RP++ +R + G+LH G++ + + + VL+T
Sbjct: 67 LQSLSLSEQGKLVFKGHQLILTSSFDDIIARPIELNYRFQKGILHTGILLENDYMEVLET 126
Query: 122 FEGVRGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFSL 181
+E V+ ++P+R+ LEFWV S + C+++E+ F D++ET SL
Sbjct: 127 WENVKTLIMPERKSLEFWV----------------SHAKGECYRLEVQFGDIIETCECSL 170
Query: 182 DEGATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKSI 241
++ T +L KLK+ PK+YQ+VSGP VASKF SDRYH+C+ED +F WVRTTDFS KSI
Sbjct: 171 EDEKT--ALLLKLKHAPKLYQRVSGPGVASKFSSDRYHVCEEDCEFLWVRTTDFSAMKSI 228
Query: 242 GCSTSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTTSEIVPLVKCRPGFNLS 301
GCS+S WEI++GLL+SD+ + P+ D DL+L+E + + SE+VPL L
Sbjct: 229 GCSSSPCWEIEDGLLSSDLLSGLPYCNNDVMDLVLDEVGDIYSASELVPLASFPSDLKLP 288
Query: 302 HEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSFVKT 361
+E+LFQLNSL+H K+SL A +LI++LS L ++TA+M+LQK+HKL+S C++PV F+KT
Sbjct: 289 YEILFQLNSLIHTHKISLGAVKTDLIEVLSKLELDTAMMILQKMHKLQSTCFEPVPFIKT 348
Query: 362 QLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYAS 421
+LHVLG+N K+ P SS+ RL++ N+MS +R LVTP K+YCLGPELETSNY+VKNFA +AS
Sbjct: 349 RLHVLGKNSKNQPSSSYSRLVNQNMMSVHRVLVTPSKVYCLGPELETSNYIVKNFALHAS 408
Query: 422 DFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLA 481
DF+RVTFVEEDW KL NA+S S+++GIF+KPYRTKIY RIL+IL+DG+VIG K + FLA
Sbjct: 409 DFLRVTFVEEDWGKLSPNAISMSVEQGIFAKPYRTKIYHRILSILRDGLVIGSKRFLFLA 468
Query: 482 FSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPV 541
FSASQLR+NSVWMFASN+ V AED+R WMGCFNKIRSVSKCAARMGQLFS+S QT+ V
Sbjct: 469 FSASQLRSNSVWMFASNEHVKAEDIREWMGCFNKIRSVSKCAARMGQLFSTSFQTMEVQS 528
Query: 542 QDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIA 601
VE++PD+EVTSDG +YCFSDGIGKIS +FA QVAQKCGLS+TPSAFQIRYGGYKGVIA
Sbjct: 529 PHVEILPDIEVTSDGVSYCFSDGIGKISQAFASQVAQKCGLSYTPSAFQIRYGGYKGVIA 588
Query: 602 VDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQ 661
VDRNSFRKLSLR SMLKFES+NRMLN+TKWS++MPC+LNREI+ LLSTLGV+D+VFE +
Sbjct: 589 VDRNSFRKLSLRGSMLKFESKNRMLNITKWSDAMPCYLNREIVILLSTLGVEDKVFEDLL 648
Query: 662 QQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQ 721
L LLGKML EAALDVL+ + G D K IL++ML QGY PN+EPYLSMML SH ENQ
Sbjct: 649 DNHLHLLGKMLTTNEAALDVLESIGGGDVKKILMRMLHQGYAPNLEPYLSMMLQSHFENQ 708
Query: 722 LSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTS 781
LSDL+SRCRI++ KGR+L+GC DETGILNYGQV+ R+TMT+ EL+S QSFF +VD+ T+
Sbjct: 709 LSDLRSRCRIFIHKGRVLVGCLDETGILNYGQVYARITMTKAELQSAQQSFFQKVDETTA 768
Query: 782 IVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDG 841
+V+G V+VTKNPCLHPGDVRVLEAVYE+ LEEK +VDCIIFPQKGERPHPNECSGGDLDG
Sbjct: 769 VVRGNVVVTKNPCLHPGDVRVLEAVYEVALEEKAWVDCIIFPQKGERPHPNECSGGDLDG 828
Query: 842 DIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHL 901
D++FISWD +LIP +T PMDYTGRR+RIMDH+VTL+EI +FFVDYMI+DTLGAISTAHL
Sbjct: 829 DLYFISWDENLIPRQTVTPMDYTGRRTRIMDHEVTLQEIQRFFVDYMISDTLGAISTAHL 888
Query: 902 VHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYIS 961
VHADR+PDKA + KCL LATLHSMAVDFAKTGA AEMP LKP+EFPDF+ER DKP YIS
Sbjct: 889 VHADREPDKALNPKCLQLATLHSMAVDFAKTGAAAEMPRFLKPREFPDFLERWDKPMYIS 948
Query: 962 FGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEM 1021
GVLGKLYRA ++S ++ S+ + S + + +YDH L DG+EAF+ A++HKE Y + M
Sbjct: 949 EGVLGKLYRAIVNSSVRSNSDDLGSVRAIQDAYDHALLFDGYEAFIETAKNHKETYLDRM 1008
Query: 1022 NALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSC 1081
N+L+NYYGA E EILTGNLR ++ YLQRDNRRY ++KDRIL+SAK+LQ E K WF C
Sbjct: 1009 NSLLNYYGAEKEVEILTGNLRQKSVYLQRDNRRYFELKDRILVSAKSLQKEVKGWFTGCC 1068
Query: 1082 KENEHPQLASAWYHVTYSPSYCKERMALLSFPWIVGDILLNIKSVNSRK 1130
KE+EH +LASAWYHVTY PSYC+ L FPW+VGDILL+IK N+RK
Sbjct: 1069 KEDEHKKLASAWYHVTYHPSYCEGSANCLGFPWVVGDILLDIKLHNTRK 1117
>gi|15237051|ref|NP_192851.1| RNA-dependent RNA polymerase 2 [Arabidopsis thaliana]
gi|75318859|sp|O82504.1|RDR2_ARATH RecName: Full=RNA-dependent RNA polymerase 2; Short=AtRDRP2; AltName:
Full=Protein SILENCING MOVEMENT DEFICIENT 1; AltName:
Full=RNA-directed RNA polymerase 2
gi|3600048|gb|AAC35535.1| similar to hypothetical proteins in Schizosaccharomyces pombe
(GB:Z98533) and C. elegans (GB:Z48334 and Z78419)
[Arabidopsis thaliana]
gi|4850292|emb|CAB43048.1| putative RNA-directed RNA polymerase [Arabidopsis thaliana]
gi|7267812|emb|CAB81214.1| putative RNA-directed RNA polymerase [Arabidopsis thaliana]
gi|332657576|gb|AEE82976.1| RNA-dependent RNA polymerase 2 [Arabidopsis thaliana]
Length = 1133
Score = 1502 bits (3888), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 719/1132 (63%), Positives = 895/1132 (79%), Gaps = 26/1132 (2%)
Query: 4 ATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSK 63
+TV +SN+PQT +A +LL FLE LG+++VFALEI T R NWK R RVQFT+L+ KS+
Sbjct: 10 STVKISNVPQTIVADELLRFLELHLGEDTVFALEIPTTRDNWKPRDFARVQFTTLEVKSR 69
Query: 64 AQNLSLNDKLVFNSQNLKISETHSDIVPRPVKAQHRVEDGVLHVGV-MCKEERLRVLQTF 122
AQ LS KL+F + NL++SE + DI+PRPV + R++D VL VG E+R L+ +
Sbjct: 70 AQLLSSQSKLLFKTHNLRLSEAYDDIIPRPVDPRKRLDDIVLTVGFPESDEKRFCALEKW 129
Query: 123 EGVRGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFSLD 182
+GVR W+L ++RR+EFWVW +S DC +K+E+ FED++ET+ ++
Sbjct: 130 DGVRCWILTEKRRVEFWVW----------------ESGDC-YKIEVRFEDIIETLSCCVN 172
Query: 183 EGAT-VNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKSI 241
A+ ++ L KLKYGPK++++V+ H+A+KF SDRY CKEDFDF W+RTTDFS +KSI
Sbjct: 173 GDASEIDAFLLKLKYGPKVFKRVT-VHIATKFKSDRYRFCKEDFDFMWIRTTDFSGSKSI 231
Query: 242 GCSTSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTTSEIVPLVKCRP-GFNL 300
G ST F E+ NG DI + P+Y+ED L +G+ F + ++IVPL+ G
Sbjct: 232 GTSTCFCLEVHNGSTMLDIFSGLPYYREDTLSLTYVDGKTFASAAQIVPLLNAAILGLEF 291
Query: 301 SHEVLFQLNSLVHNQKVSLVAA-DAELIQILSGLSMETALMVLQKLHKLKSICYDPVSFV 359
+E+LFQLN+LVH QK+SL AA D ELI+IL G+S+ETAL++L+KLH+ SICYDPV FV
Sbjct: 292 PYEILFQLNALVHAQKISLFAASDMELIKILRGMSLETALVILKKLHQQSSICYDPVFFV 351
Query: 360 KTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKY 419
KTQ+ + + K P S++KRL + N+MSC RA VTP KIY LGPELET+NYVVKNFA++
Sbjct: 352 KTQMQSVVKKMKHSPASAYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEH 411
Query: 420 ASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEF 479
SDFMRVTFVEEDWSKLPANALS + + G F KP RT IY+R+L+IL +GI +G K +EF
Sbjct: 412 VSDFMRVTFVEEDWSKLPANALSVNSKEGYFVKPSRTNIYNRVLSILGEGITVGPKRFEF 471
Query: 480 LAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVV 539
LAFSASQLR NSVWMFASN++V AED+R WMGCF KIRS+SKCAARMGQLFS+S+QTL+V
Sbjct: 472 LAFSASQLRGNSVWMFASNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIV 531
Query: 540 PVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGV 599
QDVE IPD+EVT+DG YCFSDGIGKISL+FA+QVAQKCGLSH PSAFQIRYGGYKGV
Sbjct: 532 RAQDVEQIPDIEVTTDGADYCFSDGIGKISLAFAKQVAQKCGLSHVPSAFQIRYGGYKGV 591
Query: 600 IAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEA 659
IAVDR+SFRKLSLR SMLKF+S NRMLNVT+W+ESMPCFLNREII LLSTLG++D +FEA
Sbjct: 592 IAVDRSSFRKLSLRDSMLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEA 651
Query: 660 MQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHE 719
MQ L +LG ML +R+AAL+VLQKL+G +SKN+LVKMLLQGY P+ EPYLSMML HHE
Sbjct: 652 MQAVHLSMLGNMLEDRDAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHE 711
Query: 720 NQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDK 779
+QLS+LKSRCRI VPKGR+LIGC DE GIL YGQV+VRVT+T+ EL+S+DQS+F ++D++
Sbjct: 712 SQLSELKSRCRILVPKGRILIGCMDEMGILEYGQVYVRVTLTKAELKSRDQSYFRKIDEE 771
Query: 780 TSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDL 839
TS+V GKV+VTKNPCLHPGD+RVL+A+YE+ EEK Y+DCIIFPQKGERPHPNECSGGDL
Sbjct: 772 TSVVIGKVVVTKNPCLHPGDIRVLDAIYEVHFEEKGYLDCIIFPQKGERPHPNECSGGDL 831
Query: 840 DGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTA 899
DGD FF+SWD +IP E +PPMDY G R R+MDHDVTLEEIHKFFVDYMI+DTLG ISTA
Sbjct: 832 DGDQFFVSWDEKIIPSEMDPPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVISTA 891
Query: 900 HLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRY 959
HLVHADRDP+KARS KCL LA LHS AVDFAKTGAPAEMP ALKP+EFPDF+ER +KP Y
Sbjct: 892 HLVHADRDPEKARSQKCLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTY 951
Query: 960 ISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEE 1019
IS V GKLYRA S+ Q + A + +A YD LE GFE+F+ A++H++MY E
Sbjct: 952 ISESVFGKLYRAVKSSLAQRKPEAESEDTVA---YDVTLEEAGFESFIETAKAHRDMYGE 1008
Query: 1020 EMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGS 1079
++ +LM YYGA+ E+EILTG L+ + YL RDNRRYGDMKDRI LS K+L EA WF
Sbjct: 1009 KLTSLMIYYGAANEEEILTGILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGWFEK 1068
Query: 1080 SCK-ENEHPQLASAWYHVTYSPSYCKERMALLSFPWIVGDILLNIKSVNSRK 1130
SC+ E + +LASAWY+VTY+P++ E++ LSFPWIVGD+LL+IK+ N+++
Sbjct: 1069 SCEDEQQKKKLASAWYYVTYNPNHRDEKLTFLSFPWIVGDVLLDIKAENAQR 1120
>gi|255540733|ref|XP_002511431.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
gi|223550546|gb|EEF52033.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
Length = 983
Score = 1496 bits (3873), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 717/964 (74%), Positives = 819/964 (84%), Gaps = 1/964 (0%)
Query: 166 VEILFEDVLETVGFSLDEGATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDF 225
+EI FEDVLETVG L G T+N IL KLKYG +IY+K+SGP +ASKF +DRYH+CKEDF
Sbjct: 1 MEISFEDVLETVGCRLG-GDTLNAILLKLKYGARIYKKISGPDIASKFSADRYHMCKEDF 59
Query: 226 DFFWVRTTDFSVTKSIGCSTSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTT 285
DF WVRTTDFS KS+G STSF WEI+ GL ASDI FP+Y E + ++ILE+GEE+ +
Sbjct: 60 DFIWVRTTDFSSVKSVGQSTSFCWEIEEGLEASDIFKSFPYYTEAREEVILEDGEEWGSA 119
Query: 286 SEIVPLVKCRPGFNLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKL 345
SEIVPLVKC L +E+LFQLNSLVH QK+SL A D LI L L+++TA M+LQKL
Sbjct: 120 SEIVPLVKCGSDSKLPYEILFQLNSLVHTQKISLAAVDTNLITTLGSLTIDTATMILQKL 179
Query: 346 HKLKSICYDPVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPE 405
HKL CYDP++F+K QLHV GRN K SS K L++HN+MSC+RAL+TP KIYCLGPE
Sbjct: 180 HKLAVTCYDPLAFIKKQLHVPGRNLKRPFFSSSKNLVNHNIMSCHRALITPSKIYCLGPE 239
Query: 406 LETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTI 465
LE+SNYVVKNFA YASDFMRVTFVEEDWSKLPANA+S SIQRGIF+KP+RT IY RIL+I
Sbjct: 240 LESSNYVVKNFASYASDFMRVTFVEEDWSKLPANAISMSIQRGIFAKPFRTGIYHRILSI 299
Query: 466 LQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAAR 525
L+DGIVIG K +EFLAFSASQLR+NSVWMFASND+ AE++R WMGCFNKI S+SKCAAR
Sbjct: 300 LRDGIVIGAKKFEFLAFSASQLRSNSVWMFASNDKKKAEEIREWMGCFNKIHSISKCAAR 359
Query: 526 MGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHT 585
MGQLFSSSKQT +V QD+E+IPD+EVTSDG YCFSDGIGKISLSFARQVAQKCGL+ T
Sbjct: 360 MGQLFSSSKQTFIVSPQDMEIIPDIEVTSDGINYCFSDGIGKISLSFARQVAQKCGLNRT 419
Query: 586 PSAFQIRYGGYKGVIAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIIS 645
PSAFQIRYGGYKGVIAVDRNSFRKLSLR SM KFES NRMLNVTKWSESMPC+LNREII+
Sbjct: 420 PSAFQIRYGGYKGVIAVDRNSFRKLSLRDSMCKFESENRMLNVTKWSESMPCYLNREIIT 479
Query: 646 LLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPN 705
LL+TLGVKDE+FE +QQQQL LL +ML NRE+AL+VL+ L + KNIL+KML+QGYEPN
Sbjct: 480 LLTTLGVKDEIFEGLQQQQLQLLNRMLTNRESALNVLENLAWANCKNILIKMLVQGYEPN 539
Query: 706 VEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREEL 765
VEPYLSMML ++HEN L +L+SRCRI+VPKGR+LIGC DET IL+YGQV+VR+TMT+ EL
Sbjct: 540 VEPYLSMMLQAYHENLLVELRSRCRIFVPKGRILIGCLDETRILDYGQVYVRITMTKAEL 599
Query: 766 ESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQK 825
+ DQ+ FHRVD+ T++V GKV+VTKNPCLHPGD+RVLEAVYE++LEEK VDCI+FPQK
Sbjct: 600 QDADQASFHRVDETTAVVTGKVIVTKNPCLHPGDIRVLEAVYEVELEEKGLVDCILFPQK 659
Query: 826 GERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFV 885
GERPHPNECSGGDLDGD FFISWD LIP ETE PMDY GRR R MDHDVTLEEI KFF+
Sbjct: 660 GERPHPNECSGGDLDGDQFFISWDKGLIPGETESPMDYQGRRPRKMDHDVTLEEIQKFFI 719
Query: 886 DYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPK 945
DYMINDTLGAISTAHLVHADR+PDKARSSKCL LA LHSMAVDFAKTGAPAEMP ALKPK
Sbjct: 720 DYMINDTLGAISTAHLVHADREPDKARSSKCLQLAELHSMAVDFAKTGAPAEMPKALKPK 779
Query: 946 EFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEA 1005
EFPDFMER DK YIS GVLGKLYR TLDS Q RS +W+E IAEA+YDHDLEV GFE
Sbjct: 780 EFPDFMERIDKKMYISGGVLGKLYRGTLDSTRQQRSKFVWTENIAEATYDHDLEVKGFEE 839
Query: 1006 FLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLS 1065
F+ +A SHK+MY E+++ LM+YY A EDEILTGNL+N+A YLQRDNRRYGD KDRIL+S
Sbjct: 840 FVEIAISHKDMYVEKLSGLMDYYEAKKEDEILTGNLQNKAMYLQRDNRRYGDTKDRILIS 899
Query: 1066 AKNLQNEAKEWFGSSCKENEHPQLASAWYHVTYSPSYCKERMALLSFPWIVGDILLNIKS 1125
K+LQ EAKEWF S C+ E +LASAWYHVTY PSY +E + LSFPWIV DILLNIKS
Sbjct: 900 VKSLQKEAKEWFESCCQAKEKQRLASAWYHVTYHPSYFQEGITCLSFPWIVADILLNIKS 959
Query: 1126 VNSR 1129
NS+
Sbjct: 960 ANSK 963
>gi|308080784|ref|NP_001183867.1| uncharacterized protein LOC100502460 [Zea mays]
gi|89473792|gb|ABD72708.1| RNA-dependent RNA polymerase [Zea mays]
gi|374257933|gb|AEZ01781.1| RNA-dependent DNA polymerase [Zea mays]
gi|414586834|tpg|DAA37405.1| TPA: mediator of paramutation1 [Zea mays]
Length = 1127
Score = 1176 bits (3042), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 601/1127 (53%), Positives = 768/1127 (68%), Gaps = 34/1127 (3%)
Query: 4 ATVWVSNIPQTAIAKDLLLFLESKLG-KNSVFALEIITDRSNWKSRGIGRVQFTSLDFKS 62
ATV VSNIP +AIA +LL F +S + + FA EI+ W SRG G VQF S +
Sbjct: 12 ATVRVSNIPASAIAAELLAFFDSAVTIAGATFACEIVAAHRGWLSRGHGFVQFDSSAAAT 71
Query: 63 KAQNLSLNDKLV-FNSQNLKISETHSDIVPRPVKAQHRVEDGVLHVGVMCKEERLRVLQT 121
A +L+ + +L F L +S +D++PR R L +G E L V +
Sbjct: 72 HAIDLASSGRLPPFLGSCLSVSPARADLLPRAPDLSLRAASASLILGNRVAERELEVAYS 131
Query: 122 FEGVRGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFSL 181
+GVR ++P RR++ ++ KH+ + +K+E+LFED+ E G L
Sbjct: 132 CDGVRAEVIPRMRRVDLYL--KHDSQ---------------SYKLEVLFEDINECFGCHL 174
Query: 182 DEGATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKSI 241
D IL +L Y P+I+ +SG V S+F DR+H CKED F WVR DF+ S
Sbjct: 175 D---GTGAILLQLTYAPRIHIAISGSTVKSRFTDDRFHACKEDAKFAWVRALDFTPNSSF 231
Query: 242 GCSTSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTTSEIVPLVKCRPGFNLS 301
G ++ ++ G S I PF E +L + + F ++S +VPLV C GF++
Sbjct: 232 GECSTLVLKLSKGASVSYILESLPFSGE-LGELAIASMDVFGSSSNVVPLVDCPNGFSVP 290
Query: 302 HEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSFVKT 361
+EVLF+LNSLVH K+ +A+L ++L LS++T + +K+ KLKS CY+P+ F++
Sbjct: 291 YEVLFRLNSLVHMGKLVARHVNADLFKVLEDLSIDTLRRIFEKMSKLKSTCYEPLQFIRH 350
Query: 362 QLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYAS 421
+ H + K++ S+KR +M CYR +TP KIYCLGPE E SNYVVK ++YAS
Sbjct: 351 EAHSMNMRKKAL---SNKRE-SGKLMRCYRIHITPSKIYCLGPEEEVSNYVVKYHSEYAS 406
Query: 422 DFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLA 481
DF RVTFV+EDWSKL NALS ++G FSKP +T +Y RIL+IL++G IG K YEFLA
Sbjct: 407 DFARVTFVDEDWSKLSPNALSARTEQGFFSKPLKTGLYHRILSILKEGFCIGPKKYEFLA 466
Query: 482 FSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPV 541
FSASQLR NSVWMFASN ++AE++R WMG F IRSVSKCAARMGQLFSSS+QT V
Sbjct: 467 FSASQLRGNSVWMFASNSSLTAENIRRWMGHFEDIRSVSKCAARMGQLFSSSRQTFEVSS 526
Query: 542 QDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGL--SHTPSAFQIRYGGYKGV 599
DVE+IPD+EVT+DG Y FSDGIGKIS FARQVA+ GL +H PSAFQIRYGGYKGV
Sbjct: 527 YDVEVIPDIEVTTDGTKYIFSDGIGKISTRFARQVAKLIGLDPAHPPSAFQIRYGGYKGV 586
Query: 600 IAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEA 659
I +D SF LSLR SM KFES++ MLN+T WS+S PC++NREIISLLSTLG+KDEVFE+
Sbjct: 587 ITIDPTSFFNLSLRPSMKKFESKSTMLNITNWSKSQPCYVNREIISLLSTLGIKDEVFES 646
Query: 660 MQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHE 719
MQQ + ML N+EAAL VL K+ G D+K MLLQGYEP+ EPYL M+L +H
Sbjct: 647 MQQDDMHESDGMLTNKEAALSVLGKIGGGDTKTA-ADMLLQGYEPSSEPYLLMILKAHRA 705
Query: 720 NQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDK 779
N+L+D+++RC+I+V KGR+LIGC DET L YGQV++R+T +E + +Q FF D K
Sbjct: 706 NRLTDIRTRCKIHVQKGRVLIGCLDETCKLEYGQVYIRITKNHKEQKYSEQPFFCNDDGK 765
Query: 780 TSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDL 839
T+++ GKV +TKNPCLHPGDVRVLEAVY+ L+ + +DC++FPQ+GERPHPNECSGGDL
Sbjct: 766 TAVIVGKVAITKNPCLHPGDVRVLEAVYDPGLDARGLIDCVVFPQRGERPHPNECSGGDL 825
Query: 840 DGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTA 899
DGD+FFI+WD+ LIP + + PMDYT R RIMDH VTLEEI K FV YMINDTLGAISTA
Sbjct: 826 DGDLFFITWDDKLIPEKVDAPMDYTATRPRIMDHAVTLEEIQKHFVSYMINDTLGAISTA 885
Query: 900 HLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRY 959
HL+HADRDP KARS +C+ LA LHSMAVDFAKTGAPAEMPLAL+P+EFPDFMER ++P Y
Sbjct: 886 HLIHADRDPLKARSPECVQLAALHSMAVDFAKTGAPAEMPLALRPREFPDFMERWERPMY 945
Query: 960 ISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEE 1019
+S GVLGKLYRA L + + A+ YD DLEV GF+ FL AE E Y E
Sbjct: 946 VSNGVLGKLYRAALRH--EEDAEALLPAGPPSCVYDPDLEVAGFDEFLDAAEERYEAYAE 1003
Query: 1020 EMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGS 1079
+ ALM YY A EDEILTGN+RN+ YL+RDN+RY +MKDRI+ + L E + W
Sbjct: 1004 RLGALMTYYSAEREDEILTGNIRNKLVYLRRDNKRYFEMKDRIIAAVDALHAEVRGWL-R 1062
Query: 1080 SCKENEHPQLASAWYHVTYSPSYCKERMALLSFPWIVGDILLNIKSV 1126
+CKE++ ++ASAWYHVTY P E+ SFPWI+ D LL IK+
Sbjct: 1063 ACKEDDASRVASAWYHVTYHPDRRGEKR-FWSFPWIICDTLLAIKAA 1108
>gi|242073398|ref|XP_002446635.1| hypothetical protein SORBIDRAFT_06g019330 [Sorghum bicolor]
gi|241937818|gb|EES10963.1| hypothetical protein SORBIDRAFT_06g019330 [Sorghum bicolor]
Length = 1128
Score = 1160 bits (3000), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 591/1125 (52%), Positives = 764/1125 (67%), Gaps = 33/1125 (2%)
Query: 6 VWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITD-RSNWKSRGIGRVQFTSLDFKSKA 64
V V+NIP +AIA +LL F +S + I W SRG G VQF S A
Sbjct: 14 VRVANIPASAIAAELLAFFDSAVTTTGAAFACEIAAAHRGWLSRGHGSVQFDSSAAAIHA 73
Query: 65 QNLSLNDKLV-FNSQNLKISETHSDIVPRPVKAQHRVEDGVLHVGVMCKEERLRVLQTFE 123
+L+ + +L F L +S H+D++PR R D L +G E L +++
Sbjct: 74 IDLASSGRLPPFLGSCLSVSPAHADLLPRAPDLSLRAADAGLILGNRVAERELEAAYSWD 133
Query: 124 GVRGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFSLDE 183
GVR ++P +RR++ ++ + DS +K+E+LFED+ E G LD
Sbjct: 134 GVRAEVIPRKRRVDLYL---------------KQDSRS--YKLEVLFEDIRECFGCHLD- 175
Query: 184 GATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKSIGC 243
IL +L Y P+IY +SG V S+F DR+H CKED F WVR DF+ S G
Sbjct: 176 --GTGAILLQLTYAPRIYTAISGSTVKSRFTDDRFHACKEDAKFAWVRALDFTPNNSFGE 233
Query: 244 STSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTTSEIVPLVKCRPGFNLSHE 303
++ ++ G+ SDI PF E + +L + F ++S +VPLV C GF++ +E
Sbjct: 234 CSTLVLKLSKGVPVSDILESLPFSGELE-ELAISSMLAFGSSSNVVPLVDCPNGFSVPYE 292
Query: 304 VLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSFVKTQL 363
VLF+LNSLVH K+ +A+L ++L LS++T + +K+ KLKS CY+P+ F++ +
Sbjct: 293 VLFRLNSLVHMGKLVARHVNADLFKVLEELSIDTLRRIFEKMSKLKSTCYEPLQFIRHEA 352
Query: 364 HVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDF 423
H + ++ K+ LS+ K +M CYR +TP KIYCLGPE E SNYVVK ++YASDF
Sbjct: 353 HSMSKSKKAF-LSNKKD--GGKLMRCYRIHITPSKIYCLGPEEEVSNYVVKYHSEYASDF 409
Query: 424 MRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFS 483
RVTFV+EDWSKL NALS ++G FS P +T +Y RIL+IL++G IG K YEFLAFS
Sbjct: 410 ARVTFVDEDWSKLSPNALSARTEQGFFSTPLKTGLYHRILSILKEGFCIGPKKYEFLAFS 469
Query: 484 ASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQD 543
ASQLR NSVWMFASN+ ++AE +R WMG F IRSVSKCAARMGQLFSSS+QT + D
Sbjct: 470 ASQLRGNSVWMFASNNSLTAESIRRWMGHFEDIRSVSKCAARMGQLFSSSRQTFEISSYD 529
Query: 544 VEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGL--SHTPSAFQIRYGGYKGVIA 601
VE+IPD+EVTSDG Y FSDGIGKIS FARQ+A+ GL +H PSAFQIRYGGYKGVI
Sbjct: 530 VEVIPDIEVTSDGTKYIFSDGIGKISTRFARQIAKLFGLDPAHPPSAFQIRYGGYKGVIT 589
Query: 602 VDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQ 661
+D SF LSLR SM KFES++ MLN+T WS+S PC++NREIISLLSTLG+KDEVFE+MQ
Sbjct: 590 IDPTSFFNLSLRPSMKKFESKSTMLNITNWSKSQPCYVNREIISLLSTLGIKDEVFESMQ 649
Query: 662 QQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQ 721
Q + ML N+EAAL VL K+ G D+K +M+LQGYEP+ EPYL M+L +H N+
Sbjct: 650 QDDMHESDGMLTNKEAALSVLGKIGGADTKTA-SEMVLQGYEPSSEPYLLMILKAHRANR 708
Query: 722 LSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTS 781
L+D+++RC+I+V KGR+LIGC DET L+YGQV++R+T R+E + +Q FF D KT+
Sbjct: 709 LTDIRTRCKIHVQKGRVLIGCLDETCTLDYGQVYIRITKNRKEQKYSEQPFFCNDDGKTA 768
Query: 782 IVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDG 841
++ GKV VTKNPCLHPGDVRVLEAVY+ L+ + +DC++FPQ+GERPHPNECSGGDLDG
Sbjct: 769 VIVGKVAVTKNPCLHPGDVRVLEAVYDPALDARGLIDCVVFPQRGERPHPNECSGGDLDG 828
Query: 842 DIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHL 901
D+FFI+WD+ LIP + + PMDYT R RIMDH VTLEEI K FV+YMIND LG ISTAHL
Sbjct: 829 DLFFITWDDKLIPEKVDAPMDYTATRPRIMDHAVTLEEIQKHFVNYMINDALGVISTAHL 888
Query: 902 VHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYIS 961
+HADR+P KARS +CL LA LHSMAVDFAKTGAPAEMP+AL+P+EFPDFMER ++P Y+S
Sbjct: 889 IHADRNPLKARSPECLQLAALHSMAVDFAKTGAPAEMPVALRPREFPDFMERWERPMYVS 948
Query: 962 FGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEM 1021
VLGKLYRA L + + A+ YD DLEV GF+ FL AE E+Y E++
Sbjct: 949 TSVLGKLYRAALRH--EENAEALLPAGPPRCVYDPDLEVAGFDKFLDTAEEQYEVYAEKL 1006
Query: 1022 NALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSC 1081
LM YY A EDEILTGN+RN+ YL+RDN+RY +MKDRI+ + L E + W +
Sbjct: 1007 GTLMTYYSAEHEDEILTGNIRNKLVYLRRDNKRYFEMKDRIIAAVDALHAEVRGWLRAR- 1065
Query: 1082 KENEHPQLASAWYHVTYSPSYCKERMALLSFPWIVGDILLNIKSV 1126
KE++ +LASAWYHVTY P E+ SFPW+ D LL IK+
Sbjct: 1066 KEDDASKLASAWYHVTYHPDRRGEKR-FWSFPWVACDTLLAIKAA 1109
>gi|357164043|ref|XP_003579930.1| PREDICTED: probable RNA-dependent RNA polymerase 2-like [Brachypodium
distachyon]
Length = 1140
Score = 1152 bits (2979), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 589/1133 (51%), Positives = 772/1133 (68%), Gaps = 35/1133 (3%)
Query: 4 ATVWVSNIPQTAIAKDLLLFLESKLGK-NSVFALEIITDRSNWKSRGIGRVQFTSLDFKS 62
ATV VSNIP+ A+A +LL F +S + + FA EI+ W+SRG G VQF S S
Sbjct: 12 ATVRVSNIPRLAVAAELLAFFDSAVAAVGTTFACEIVAAHRGWQSRGHGTVQFDSAATAS 71
Query: 63 KAQNLSLNDKLV-FNSQNLKISETHSDIVPRPVKAQHRVEDGVLHVGVMCKEERLRVLQT 121
A L+ + +L F L +S +D++PR R L VG E L + +T
Sbjct: 72 LAAELASSGRLPRFLGSPLSVSPAPADLLPRAPAPSLRASGARLLVGNRVAERELEMAET 131
Query: 122 FEGVRGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFSL 181
+GVR ++P +RR++ ++ H+ +K+E+LFED+ SL
Sbjct: 132 LDGVRVEVIPGKRRVDLYL--THDSHR---------------YKLEVLFEDIRNCFRCSL 174
Query: 182 DEGATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKSI 241
D + IL +L Y P+I+ SGP V S+F DR H CKED F WVR DF+ +S
Sbjct: 175 D---GTSAILLQLTYAPRIHTAFSGPAVYSRFKDDRLHACKEDAKFTWVRALDFTPNQSF 231
Query: 242 GCSTSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTTSEIVPLVKCRPGFNLS 301
G ++ ++ L S I N PF +L + + +S+ VPLV C G ++S
Sbjct: 232 GKCSTLVIKLDEDALMSYILNTLPF-SGVLGELAISSMDVVGPSSKAVPLVDCPHGCSVS 290
Query: 302 HEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSFVKT 361
+EVLF+LNSLVH K+ +A+L L + + + + +K+ KL+S CY+P+ F+++
Sbjct: 291 YEVLFRLNSLVHMGKIVAKHVNAKLFAFLEQVPLHISRRIFEKMSKLESTCYEPLQFIES 350
Query: 362 QLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYAS 421
+L L N L S KR + +M CYR +TP KIYCLGPE E SNYVVK+ ++YAS
Sbjct: 351 ELK-LTHNA----LLSSKREGEGKLMRCYRIHITPSKIYCLGPEEEASNYVVKHHSEYAS 405
Query: 422 DFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLA 481
DF+RVTFV+EDWSKL NA+S I++G FS+P++T +Y RIL+IL++G +IG K +EFLA
Sbjct: 406 DFVRVTFVDEDWSKLSVNAISARIEQGFFSQPFKTGLYYRILSILKEGFIIGPKKFEFLA 465
Query: 482 FSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPV 541
FSASQLR SVWMFASND ++AE +R WMG F +IRSVSKCAARMGQLFSSS+QT+ V
Sbjct: 466 FSASQLREGSVWMFASNDSLNAESIRRWMGHFEEIRSVSKCAARMGQLFSSSRQTVEVRP 525
Query: 542 QDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHT--PSAFQIRYGGYKGV 599
DVE IPD+EVT++ Y FSDGIGK+S+ FAR++A + GL HT PSAFQIR+GGYKGV
Sbjct: 526 WDVEEIPDIEVTTNNTKYIFSDGIGKMSVRFAREIAYRIGLDHTNPPSAFQIRFGGYKGV 585
Query: 600 IAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEA 659
IAVD +SFR LSLR SM KFES RMLN+T WS+S PC++NREIISLLSTLG++DEVFE
Sbjct: 586 IAVDPSSFRNLSLRPSMRKFESDCRMLNITSWSKSQPCYVNREIISLLSTLGIRDEVFEL 645
Query: 660 MQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHE 719
MQQ + L +ML N+E AL VL K+ ++K MLLQGYEP EPYL M+L +H +
Sbjct: 646 MQQDDMRELDEMLTNKEVALSVLGKIGSAETKTA-ADMLLQGYEPISEPYLLMILKAHQD 704
Query: 720 NQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDK 779
N+L+D++S+ +I+VPKGR+L+GC DETG L YGQV++R+T +E + +Q +F D K
Sbjct: 705 NRLTDIRSKFKIHVPKGRVLLGCLDETGKLKYGQVYIRITKNNKEQKENEQPYFSEDDGK 764
Query: 780 TSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDL 839
T + GKV V+KNPCLHPGDVRVLEAVY+ L K VDC++FPQ+GERPHPNECSGGDL
Sbjct: 765 TVTLVGKVAVSKNPCLHPGDVRVLEAVYDPGLHAKKLVDCVVFPQRGERPHPNECSGGDL 824
Query: 840 DGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTA 899
DGD++F++WD+ LIP + + PMDYTG R RIMDH VTLEEI + V+YM++D+LGAIS A
Sbjct: 825 DGDLYFVTWDDKLIPEKADAPMDYTGARPRIMDHVVTLEEIQQHVVNYMLSDSLGAISNA 884
Query: 900 HLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRY 959
HL+HADRDP KARS +CL LA LHSMAVDFAKTGAPAE+P +L+P+EFPDFMER DKP Y
Sbjct: 885 HLIHADRDPMKARSPECLQLAALHSMAVDFAKTGAPAELPRSLRPREFPDFMERWDKPMY 944
Query: 960 ISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEE 1019
IS GVLGKLYRA + + S+A+ S+ + +YD +L V GFE FL AE H ++Y E
Sbjct: 945 ISNGVLGKLYRAAVSRMES--SHALASQVQSSPTYDRELAVPGFEEFLEDAEKHYDLYVE 1002
Query: 1020 EMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGS 1079
++ LMNYYGA EDEILTGN+RNR YL++D +RY DMKDRI S L E + WF +
Sbjct: 1003 KLTTLMNYYGAEHEDEILTGNIRNRLLYLRKDRKRYSDMKDRIFDSVNALHEEVRGWFKN 1062
Query: 1080 SCK-ENEHPQLASAWYHVTYSPSYCK-ERMALLSFPWIVGDILLNIKSVNSRK 1130
K E E ++ASAWY V Y P + + E+ SFPWI+ D LL IK+ S +
Sbjct: 1063 CLKAEEEASRVASAWYRVAYHPDHRRPEKKQFWSFPWIICDKLLAIKATKSNR 1115
>gi|326493668|dbj|BAJ85295.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1127
Score = 1139 bits (2947), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 591/1133 (52%), Positives = 771/1133 (68%), Gaps = 34/1133 (3%)
Query: 4 ATVWVSNIPQTAIAKDLLLFLESKLGKNSVFAL-EIITDRSNWKSRGIGRVQFTSLDFKS 62
ATV VSNIP +A+AK+LL F +S + EI R W SRG G VQF S +
Sbjct: 12 ATVRVSNIPASAVAKELLQFFDSAVAAAGGAYACEIAATRRGWLSRGNGSVQFDSTATAT 71
Query: 63 KAQNLSLNDKLV-FNSQNLKISETHSDIVPRPVKAQHRVEDGVLHVGVMCKEERLRVLQT 121
A L+ + +L F L +S +D++PR RV D L VG E +
Sbjct: 72 LAGELASSGRLPRFLGSLLSVSPAPADLLPRAPDLSLRVADARLVVGNRVAEREFAAADS 131
Query: 122 FEGVRGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFSL 181
++ VR ++P +RR++ V+ H+ + FK+E+ FED+ S
Sbjct: 132 WDSVRVEIIPGKRRMD--VYLNHDSQM---------------FKLEVFFEDIRNCYQCSF 174
Query: 182 DEGATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKSI 241
D GA GIL +L Y P+I +SGP V S+F DR+H CKED F WVR DF+ S
Sbjct: 175 D-GA--GGILLQLMYAPRICTTISGPAVYSRFSDDRFHACKEDAKFTWVRALDFTPNHSF 231
Query: 242 GCSTSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTTSEIVPLVKCRPGFNLS 301
G ++ + G S I N P E +L++ + F ++S++VPLV C G ++S
Sbjct: 232 GKCSTLALVLDEGAPVSFILNSLPLSGE-LGELVISSMDFFGSSSKVVPLVDCPSGCSVS 290
Query: 302 HEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSFVKT 361
+EVLF+LNSLVH K+ +A+L + L + + + + +K+ KL+ CY+P+ F++
Sbjct: 291 YEVLFRLNSLVHMGKLVAKHVNADLFKALEEIPVHISRRIFEKMSKLEFTCYEPLQFIQQ 350
Query: 362 QLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYAS 421
+ H R+ + L S K + +M CYR +TP KIYCLGPE E SNYVVK+ +YAS
Sbjct: 351 EAHSRKRSHDA--LLSSKTEGEGKLMMCYRIHITPSKIYCLGPEEEVSNYVVKHHKQYAS 408
Query: 422 DFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLA 481
DF RVTFV+EDWSKL +A+S RG FS+P +T +Y RIL+IL++G IG K YEFLA
Sbjct: 409 DFTRVTFVDEDWSKLFPDAISARTGRGFFSQPLKTGLYYRILSILKEGFSIGPKKYEFLA 468
Query: 482 FSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPV 541
FSASQLR +SVWMFASND + AED+R WMG F +IRSVSKCAARMGQLFSSS+QTL +
Sbjct: 469 FSASQLRGSSVWMFASNDSLKAEDIRRWMGNFEEIRSVSKCAARMGQLFSSSRQTLDILP 528
Query: 542 QDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHT--PSAFQIRYGGYKGV 599
+DVE IPD+EVT+DG Y FSDGIGKIS FA+++A + GL +T PSAFQIRYGGYKGV
Sbjct: 529 RDVEEIPDIEVTTDGTKYIFSDGIGKISERFAKEMACRIGLDYTNPPSAFQIRYGGYKGV 588
Query: 600 IAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEA 659
+AVD +SFR LSLR SM KFES++RM N+T S+S PC++NREIISLLSTLG++DE+FE
Sbjct: 589 VAVDPDSFRNLSLRPSMKKFESKSRMFNITSTSKSQPCYMNREIISLLSTLGIRDEIFEL 648
Query: 660 MQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHE 719
MQQ + L +ML NREAAL VL K+ ++K K+LLQGYEP++EPYL M+L +H +
Sbjct: 649 MQQHDMRELDEMLTNREAALSVLGKIGSAETKTA-SKILLQGYEPSLEPYLLMILKAHQD 707
Query: 720 NQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVD-- 777
N+L+D+++RC+I+VPKGR+LIGC DETG L YGQV++R+T +E + Q +F +
Sbjct: 708 NRLTDIRTRCKIHVPKGRVLIGCLDETGELEYGQVYIRITKNSKEQKDNCQPYFSEDNGK 767
Query: 778 DKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGG 837
DKT++V GKV V+KNPCLHPGD+RVLEAVY+ L K+ VDC++FPQ+GERPHPNECSGG
Sbjct: 768 DKTAVVVGKVAVSKNPCLHPGDIRVLEAVYDHGLYSKNLVDCVVFPQRGERPHPNECSGG 827
Query: 838 DLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAIS 897
DLDGD++FI+WD LIP + + PMDYT R RIMDH VTLEEI K+FVDYMIND+LGAIS
Sbjct: 828 DLDGDLYFITWDEKLIPEKVDSPMDYTAARPRIMDHVVTLEEIQKYFVDYMINDSLGAIS 887
Query: 898 TAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKP 957
TAHLVHADR P KARS +CL LA LHSMAVDFAK+GAPAEMP +L+PKE+PDFMER DKP
Sbjct: 888 TAHLVHADRHPMKARSPECLQLAALHSMAVDFAKSGAPAEMPRSLRPKEYPDFMERWDKP 947
Query: 958 RYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMY 1017
YIS G LGKLYRA + + + ++ I ++D DLEV GFE FL AE ++Y
Sbjct: 948 TYISNGPLGKLYRAAASRMQSAPAPSSSAQPI--PAFDPDLEVPGFEEFLVSAEECYDLY 1005
Query: 1018 EEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWF 1077
E+++ LM+YYG EDEILTGN+RNR YL++DN+RY +MKDRI+ S + L E + WF
Sbjct: 1006 AEKLSTLMSYYGTEHEDEILTGNIRNRLLYLKKDNKRYFEMKDRIIDSVEGLHKEVRGWF 1065
Query: 1078 GSSCKENEHPQLASAWYHVTYSPSYCKE-RMALLSFPWIVGDILLNIKSVNSR 1129
S K E + ASAWYH+ Y P + + + SFPWI+ D LL IK + R
Sbjct: 1066 TSRPKA-EAARRASAWYHMAYHPDHHQPGKRRFWSFPWIICDELLTIKESSRR 1117
>gi|125548642|gb|EAY94464.1| hypothetical protein OsI_16234 [Oryza sativa Indica Group]
Length = 1136
Score = 1122 bits (2902), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 580/1124 (51%), Positives = 770/1124 (68%), Gaps = 31/1124 (2%)
Query: 8 VSNIPQTAIAKDLLLFLESKLGKNSVFAL-EIITDRSNWKSRGIGRVQFTSLDFKSKAQN 66
VSNIP +A+A +LL F +S + EI W SRG G VQF S + A
Sbjct: 14 VSNIPPSAVAAELLAFFDSAVAGAGGAFACEIAAAHRGWLSRGHGTVQFGSAAAAAAAAG 73
Query: 67 LSLNDKLV-FNSQNLKISETHSDIVPRPVKAQHRVEDGVLHVGVMCKEERLRVLQTFEGV 125
L+ + +L F L +S + D++PR R L VG E ++GV
Sbjct: 74 LASSGRLPRFLGALLSVSPSPVDLLPRASDLSLRAAGAGLVVGDRVAERVFEAADAWDGV 133
Query: 126 RGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFSLDEGA 185
R ++P +RR++ ++ +H+ + +K+E+LFED+ + +G +LD
Sbjct: 134 RAEVIPGKRRVDLYL--EHDPQR---------------YKLEVLFEDMKDCLGCTLD--- 173
Query: 186 TVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKSIGCST 245
+ IL +L Y P+I+ +SGP V S+F DR+H CKED F WVR DF+ S G +
Sbjct: 174 GMGAILLQLNYAPRIHTAISGPAVNSRFMDDRFHACKEDAKFSWVRALDFTPNYSFGRCS 233
Query: 246 SFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTTSEIVPLVKCRPGFNLSHEVL 305
+ ++ L SDI PF + +L + + +S +VPLV C +++ +EVL
Sbjct: 234 TLVLKLGKSALVSDILKSLPF-SGNLGELTMNSMDGVGASSNVVPLVHCPRDYSVPYEVL 292
Query: 306 FQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSFVKTQLHV 365
F+LNSL+H K+ +A+L + L L ++ + + +K+HKL+S CY+P+ F++ + +
Sbjct: 293 FRLNSLMHMGKIVAKHVNADLFKALQELPVDVSRRIFEKMHKLESTCYEPLQFIQQEAYS 352
Query: 366 LGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMR 425
+ R+ + + + + +M CYR +TP KI+CLGPE E +NYVVK+ + YASDF+R
Sbjct: 353 MKRSHNVLLSNEGEGEGERKLMKCYRVNITPSKIFCLGPEEEVTNYVVKHHSAYASDFVR 412
Query: 426 VTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSAS 485
VTFV+EDWSKL +NA+S I++G FSKP++T +Y RIL+IL+ G IG K++EFLAFSAS
Sbjct: 413 VTFVDEDWSKLSSNAISARIEQGFFSKPFKTGLYYRILSILKKGFSIGPKNFEFLAFSAS 472
Query: 486 QLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVE 545
QLR NSVWMFASN ++A +R WMG F IRSVSKCAARMGQLFSSS+QT V DVE
Sbjct: 473 QLRGNSVWMFASNASLNAGGIRRWMGHFENIRSVSKCAARMGQLFSSSRQTFEVLRWDVE 532
Query: 546 MIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHT--PSAFQIRYGGYKGVIAVD 603
+IPD+E+T+DG+ Y FSDGIGKISL FA++VA GL T PSAFQIRYGGYKGVIA+D
Sbjct: 533 VIPDIEITTDGSKYIFSDGIGKISLRFAKRVAHHVGLDPTNLPSAFQIRYGGYKGVIAID 592
Query: 604 RNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQ 663
S LSLR SM KFES +RMLN+T WS+S PC++NREIISLLSTLG++DE+F AMQQ
Sbjct: 593 PMSSIDLSLRPSMKKFESESRMLNITSWSKSQPCYVNREIISLLSTLGIRDEIFVAMQQD 652
Query: 664 QLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLS 723
++ +ML N+E AL VL KL G ++K VKMLLQGYEP+ EPYLSM+L +H EN+L+
Sbjct: 653 EMRETEEMLTNKEVALSVLGKLGGSETKTA-VKMLLQGYEPSSEPYLSMILKAHQENRLT 711
Query: 724 DLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIV 783
D+++RC+I+VPKGR+LIGC DETG+L YGQV++R+T +E + +QS+F+ D KT+ V
Sbjct: 712 DIRTRCKIHVPKGRVLIGCLDETGVLEYGQVYIRITKNSKEQKDSNQSYFYNDDGKTATV 771
Query: 784 KGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDI 843
GKV +TKNPCLHPGD+RVLEA+Y+ L VDC++FPQ+GERPHPNECSGGDLDGD+
Sbjct: 772 VGKVAITKNPCLHPGDIRVLEAIYDPDL--VGMVDCLVFPQRGERPHPNECSGGDLDGDL 829
Query: 844 FFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVH 903
+FI+WD+ LIP + + PMDYT R RIMDH VTLEEI K FVDYMIND+LGAISTAHL+H
Sbjct: 830 YFITWDDKLIPEKVDTPMDYTATRPRIMDHVVTLEEIQKHFVDYMINDSLGAISTAHLIH 889
Query: 904 ADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFG 963
ADR P KARS +CL LATLHSMAVDFAKTGAPAEMP L+P+E+PDFMER +KP YIS G
Sbjct: 890 ADRSPLKARSPECLQLATLHSMAVDFAKTGAPAEMPRTLRPREYPDFMERWEKPMYISNG 949
Query: 964 VLGKLYRATLDSIMQIRSNAIWSEKIAEAS--YDHDLEVDGFEAFLGVAESHKEMYEEEM 1021
VLGKLYR+ + + + + S A+ S YD DLEV G + FL AE + E+YEE++
Sbjct: 950 VLGKLYRSAMGHMEKSGDSGALSSSSAQPSPTYDPDLEVPGSDEFLQAAEEYYELYEEKL 1009
Query: 1022 NALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSC 1081
LMNYY A EDEILTGN+RN+ YL+RDN+RY +MKDRI+ + L EA+ W SS
Sbjct: 1010 TTLMNYYRAEHEDEILTGNIRNKMLYLKRDNKRYFEMKDRIVAAVDALHREARGWLLSSR 1069
Query: 1082 KENEHPQLASAWYHVTYSPSYCKERMALLSFPWIVGDILLNIKS 1125
KE + ++ASAWY VTY P + + SFPWI D LL IK+
Sbjct: 1070 KEEDASRMASAWYRVTYHPDRRRGKR-FWSFPWIACDNLLAIKA 1112
>gi|75327281|sp|Q7XM31.1|RDR2_ORYSJ RecName: Full=Probable RNA-dependent RNA polymerase 2; Short=OsRDR2
gi|32492169|emb|CAE04828.1| OSJNBb0048E02.13 [Oryza sativa Japonica Group]
Length = 1136
Score = 1121 bits (2899), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 579/1124 (51%), Positives = 768/1124 (68%), Gaps = 31/1124 (2%)
Query: 8 VSNIPQTAIAKDLLLFLESKLGKNSVFAL-EIITDRSNWKSRGIGRVQFTSLDFKSKAQN 66
VSNIP +A+A +LL F +S + EI W SRG G VQF S + A
Sbjct: 14 VSNIPPSAVAAELLAFFDSAVAVAGGAFACEIAAAHRGWLSRGHGTVQFGSAAAAAAAAG 73
Query: 67 LSLNDKLV-FNSQNLKISETHSDIVPRPVKAQHRVEDGVLHVGVMCKEERLRVLQTFEGV 125
L+ + +L F L +S + D++PR R L VG E ++GV
Sbjct: 74 LASSGRLPRFLGALLSVSPSPVDLLPRASDLSLRAAGAGLVVGDRVAERVFEAADAWDGV 133
Query: 126 RGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFSLDEGA 185
R ++P +RR++ ++ +H+ + +K+E+LFED+ + +G +LD
Sbjct: 134 RAEVIPGKRRVDLYL--EHDSQR---------------YKLEVLFEDMKDCLGCTLD--- 173
Query: 186 TVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKSIGCST 245
+ IL +L Y P+I+ +SGP V S+F DR+H CKED F WVR DF+ S G +
Sbjct: 174 GMGAILLQLNYAPRIHTAISGPAVNSRFMDDRFHACKEDAKFSWVRALDFTPNYSFGRCS 233
Query: 246 SFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTTSEIVPLVKCRPGFNLSHEVL 305
+ ++ L SDI PF + +L + + +S +VPLV C +++ +EVL
Sbjct: 234 TLVLKLGKSALVSDILKSLPF-SGNLGELTMNSMDGVGASSNVVPLVHCPRDYSVPYEVL 292
Query: 306 FQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSFVKTQLHV 365
F+LNSL+H K+ +A+L + L L ++ + + +K+HKL+S CY P+ F++ + +
Sbjct: 293 FRLNSLMHMGKIVAKHVNADLFKALQELPVDVSRRIFEKMHKLESTCYGPLQFIQQEAYS 352
Query: 366 LGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMR 425
+ R+ + + + + +M CYR +TP KI+C GPE E +NYVVK+ + YASDF+R
Sbjct: 353 MKRSHNVLLSNEGEGEGERKLMKCYRVNITPSKIFCFGPEEEVTNYVVKHHSAYASDFVR 412
Query: 426 VTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSAS 485
VTFV+EDWSKL +NA+S I++G FSKP++T +Y RIL+IL+ G IG K++EFLAFSAS
Sbjct: 413 VTFVDEDWSKLSSNAISARIEQGFFSKPFKTGLYYRILSILKKGFSIGPKNFEFLAFSAS 472
Query: 486 QLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVE 545
QLR NSVWMFASN ++A +R WMG F IRSVSKCAARMGQLFSSS+QT V DVE
Sbjct: 473 QLRGNSVWMFASNASLNAGGIRRWMGHFENIRSVSKCAARMGQLFSSSRQTFEVLRWDVE 532
Query: 546 MIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHT--PSAFQIRYGGYKGVIAVD 603
+IPD+E+T+DG+ Y FSDGIGKISL FA++VA GL T PSAFQIRYGGYKGVIA+D
Sbjct: 533 VIPDIEITTDGSKYIFSDGIGKISLRFAKRVAHHVGLDPTNLPSAFQIRYGGYKGVIAID 592
Query: 604 RNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQ 663
S LSLR SM KFES +RMLN+T WS+S PC++NREIISLLSTLG++DE+F AMQQ
Sbjct: 593 PMSSIDLSLRPSMKKFESESRMLNITSWSKSQPCYVNREIISLLSTLGIRDEIFVAMQQD 652
Query: 664 QLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLS 723
++ +ML N+E AL VL KL G ++K VKMLLQGYEP+ EPYLSM+L +H EN+L+
Sbjct: 653 EMRETEEMLTNKEVALSVLGKLGGSETKTA-VKMLLQGYEPSSEPYLSMILKAHQENRLT 711
Query: 724 DLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIV 783
D+++RC+I+VPKGR+LIGC DETG+L YGQV++R+T +E + +QS+F+ D KT+ V
Sbjct: 712 DIRTRCKIHVPKGRVLIGCLDETGVLEYGQVYIRITKNSKEQKDSNQSYFYNDDGKTATV 771
Query: 784 KGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDI 843
GKV +TKNPCLHPGD+RVLEA+Y+ L VDC++FPQ+GERPHPNECSGGDLDGD+
Sbjct: 772 VGKVAITKNPCLHPGDIRVLEAIYDPDL--VGMVDCLVFPQRGERPHPNECSGGDLDGDL 829
Query: 844 FFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVH 903
+FI+WD+ LIP + + PMDYT R RIMDH VTLEEI K FVDYMIND+LGAISTAHL+H
Sbjct: 830 YFITWDDKLIPEKVDTPMDYTATRPRIMDHVVTLEEIQKHFVDYMINDSLGAISTAHLIH 889
Query: 904 ADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFG 963
ADR P KARS +CL LATLHSMAVDFAKTGAPAEMP L+P+E+PDFMER +KP YIS G
Sbjct: 890 ADRSPLKARSPECLQLATLHSMAVDFAKTGAPAEMPRTLRPREYPDFMERWEKPMYISNG 949
Query: 964 VLGKLYRATLDSIMQIRSNAIWSEKIAEAS--YDHDLEVDGFEAFLGVAESHKEMYEEEM 1021
VLGKLYR+ + + + + S A+ S YD DLEV G + FL AE + E+YEE++
Sbjct: 950 VLGKLYRSAMGHMEKSGDSGALSSSSAQPSPTYDPDLEVPGSDEFLQAAEEYYELYEEKL 1009
Query: 1022 NALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSC 1081
LMNYY A EDEILTGN+RN+ YL+RDN+RY +MKDRI+ + L EA+ W SS
Sbjct: 1010 TTLMNYYRAELEDEILTGNIRNKMLYLKRDNKRYFEMKDRIVAAVDALHREARGWLLSSR 1069
Query: 1082 KENEHPQLASAWYHVTYSPSYCKERMALLSFPWIVGDILLNIKS 1125
KE + ++ASAWY VTY P + + SFPWI D LL IK+
Sbjct: 1070 KEEDASRMASAWYRVTYHPDRRRGKR-FWSFPWIACDNLLAIKA 1112
>gi|357117510|ref|XP_003560510.1| PREDICTED: probable RNA-dependent RNA polymerase 2-like [Brachypodium
distachyon]
Length = 1138
Score = 1121 bits (2899), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 574/1132 (50%), Positives = 773/1132 (68%), Gaps = 36/1132 (3%)
Query: 4 ATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSK 63
ATV VSNIP+ A+A ++L F +S +G + FA EI+ W+SRG G VQF S +
Sbjct: 12 ATVRVSNIPRLAVAAEILAFFDSAVG--ATFACEIVAAHRGWQSRGHGTVQFDSAATATL 69
Query: 64 AQNLSLNDKLV-FNSQNLKISETHSDIVPRPVKAQHRVEDGVLHVGVMCKEERLRVLQTF 122
A L+ + +L F L +S +D++PR + R L VG E L + +T
Sbjct: 70 AAELASSGRLPRFLGSPLSVSPAPADLLPRAPEPSLRASGARLLVGNRVAERELEIAETL 129
Query: 123 EGVRGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFSLD 182
GVR ++P +RR++ ++ H+ + +K+E+LFED+ + SLD
Sbjct: 130 AGVRVEVIPGKRRVDLYL--THDSQR---------------YKLEVLFEDIRDCFRCSLD 172
Query: 183 EGATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKSIG 242
+ IL +L Y P+I+ SGP V S+F DR H CKED F WVR DF+ +S G
Sbjct: 173 ---GTSAILLQLTYAPRIHTAFSGPAVYSRFTDDRLHACKEDAKFTWVRALDFTPNQSFG 229
Query: 243 CSTSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTTSEIVPLVKCRPGFNLSH 302
++ ++ I N PF ++ + + +S++VPLV C G ++S+
Sbjct: 230 KCSTLVIKLDEDAPMLHILNGLPFSGV-LGEMAISSMDVVGPSSKVVPLVDCPHGCSVSY 288
Query: 303 EVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSFVKTQ 362
EVLF+LNSLVH K+ +A L L + + + + +K+ KL+S CY+P+ F++++
Sbjct: 289 EVLFRLNSLVHTGKIVAKHVNANLFTFLEQVPLHISRKIFEKMSKLESTCYEPLQFIESE 348
Query: 363 LHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASD 422
L L +N L S KR + +M CYR +TP KIYCLGP+ E SNYVVK+ ++YASD
Sbjct: 349 LK-LTQNA----LLSSKREGEGKLMRCYRIHITPSKIYCLGPQEEASNYVVKHHSEYASD 403
Query: 423 FMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAF 482
F+RVTFV+EDWSKL NA+S I++G FS+P++T +Y RIL+IL++G +IG K ++FLAF
Sbjct: 404 FVRVTFVDEDWSKLSVNAISARIEQGFFSQPFKTGLYYRILSILKEGFIIGPKKFKFLAF 463
Query: 483 SASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQ 542
SASQLR SVWMFASND ++AE +R WMG F +I SVSKCAARMGQLFSSS+QT+ V +
Sbjct: 464 SASQLREGSVWMFASNDSLNAEGIRRWMGHFEEICSVSKCAARMGQLFSSSRQTVEVRPK 523
Query: 543 DVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSH--TPSAFQIRYGGYKGVI 600
DVE IPD+EV ++ Y FSDGIGK+S+ FA+++A + GL H PSAF+IR+GGYKGVI
Sbjct: 524 DVEEIPDIEVITNNMKYIFSDGIGKMSVRFAKEIAYRIGLDHKNPPSAFEIRFGGYKGVI 583
Query: 601 AVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAM 660
AVD +S+R LSLR SM KFES RMLN+T WS+S PC +NREIISLLSTLG++DEVFE M
Sbjct: 584 AVDPSSYRNLSLRPSMRKFESDCRMLNITSWSKSQPCHVNREIISLLSTLGIRDEVFELM 643
Query: 661 QQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHEN 720
QQ + L +ML N+E AL VL K+ ++K MLLQGY+P EPYL M+L +H +N
Sbjct: 644 QQDDMCELDEMLTNKEIALSVLGKIGSAETKTA-ADMLLQGYKPISEPYLLMILKAHQDN 702
Query: 721 QLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKT 780
+L+D++S+ +I+VPKGR+L+GC DETGIL YGQV++R+T +E + +Q +F + D KT
Sbjct: 703 RLTDIRSKFKIHVPKGRVLLGCLDETGILKYGQVYIRITKNNKEQKENEQPYFCKDDGKT 762
Query: 781 SIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLD 840
+ GKV V+KNPCLHPGDVRVLEAV +++L VDC++FPQ+GERPHPNECSGGDLD
Sbjct: 763 VTLVGKVAVSKNPCLHPGDVRVLEAVCDLELHATKLVDCVVFPQRGERPHPNECSGGDLD 822
Query: 841 GDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAH 900
GD++F++WD+ LIP + + PMDYT R RIMDH VTLEEI + V+YM++D+LGAIS AH
Sbjct: 823 GDLYFVTWDDRLIPEKADTPMDYTAARPRIMDHVVTLEEIQQHVVNYMLSDSLGAISNAH 882
Query: 901 LVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYI 960
L+HADRDP KARS +CL LA LHSMAVDFAKTGAPAE+P +L+P+EFPDFMER DKP YI
Sbjct: 883 LIHADRDPMKARSPECLRLAALHSMAVDFAKTGAPAELPRSLRPREFPDFMERWDKPMYI 942
Query: 961 SFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEE 1020
S GVLGKLYRA + + S+A+ S+ + +YD +LEV GFE FL A+ H ++Y E+
Sbjct: 943 STGVLGKLYRAAVSRMES--SHALASQVQSSPTYDRELEVPGFEEFLEDADKHYDLYVEK 1000
Query: 1021 MNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSS 1080
+ LMNY GA EDE+LTGN+RNR YL++D +RY DMKDRI+ S L E + WF S
Sbjct: 1001 LTTLMNYDGAEHEDEMLTGNIRNRLLYLRKDRKRYSDMKDRIVDSVNALHEEVRGWFHSC 1060
Query: 1081 CK-ENEHPQLASAWYHVTYSPSYCK-ERMALLSFPWIVGDILLNIKSVNSRK 1130
K E E ++ASAWY VTY P + + E+ SFPWI+ D LL IK S +
Sbjct: 1061 LKAEEEASRVASAWYRVTYHPDHRRPEKKQFWSFPWIICDKLLAIKESKSNR 1112
>gi|224099571|ref|XP_002311536.1| rna-dependent RNA polymerase [Populus trichocarpa]
gi|222851356|gb|EEE88903.1| rna-dependent RNA polymerase [Populus trichocarpa]
Length = 1133
Score = 810 bits (2093), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 463/1145 (40%), Positives = 681/1145 (59%), Gaps = 55/1145 (4%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKA 64
TV VS P + A + +FLES G +V AL+I R+ +R VQFT+ ++
Sbjct: 4 TVKVSGFPSSTTAGAVQVFLESHTGGGTVEALKIREIRTG-GARKYAIVQFTTT--RAAE 60
Query: 65 QNLSL-NDKLVFNSQNLKISETHSDIVPRPVKAQHRVEDGVLHVGVMCKEERLRVLQTFE 123
Q +SL N +L + L DI+P+P H +E LH G +E+ + +
Sbjct: 61 QIISLANPRLWYGHSYLNARPMDRDIIPQPRSFLHTMESVTLHFGYQTSKEKFSAVWSGN 120
Query: 124 GVRGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFSLDE 183
V R+L F++ HN + E +K+ +LFE++ + +
Sbjct: 121 NVSVNFGLGMRKLHFFL--SHN------LAE---------YKLNLLFENIWQ-IELHRPR 162
Query: 184 GATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKSIGC 243
G TV +L +L P+IY++ P ++ F + ++ D WVRTTDF+ + IG
Sbjct: 163 GQTVKYLLIQLYGAPRIYER-DVPSSSNVFEDPLLNYFRDVPDEQWVRTTDFTPSCGIGH 221
Query: 244 STSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTTSEIVPLVKCRPGFNLSHE 303
S+S E+ N L + + F +YKE++ +LE G F ++VP+V G NL +
Sbjct: 222 SSSLCLELPNHLQLPNFNENFFYYKENEGTFVLESGLTFSRNPDLVPIVGPSSGVNLPYN 281
Query: 304 VLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALM--VLQKLHKLKSICYDPVSFVKT 361
+LF++N LV N ++ D +++ M + L+KL+ LK CY+P +
Sbjct: 282 ILFRVNLLVQNGCLAGSMLDDIFYRLVDPNRMPVRCIEYALEKLYHLKECCYEPSKWFNE 341
Query: 362 QL--HVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKY 419
Q ++ N P+ S +D ++ Y+ +TP K++ GPE+ SN V++ + +
Sbjct: 342 QYKKYLTSGNPPRSPVLS----LDAGLVYVYKVQITPCKVFFCGPEVNVSNRVLRQYRED 397
Query: 420 ASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEF 479
+F+RV+FV+E+ K+ ++ S + ++ RT IY+RIL+ LQ+GIVIGDK +EF
Sbjct: 398 IDNFLRVSFVDEELEKI--HSTDVSPRTSSRNELRRTAIYNRILSTLQNGIVIGDKKFEF 455
Query: 480 LAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVV 539
LAFS+SQLR NS WMFAS ++A D+R WMG F+KIR+V++ AAR+GQ F SS +TL V
Sbjct: 456 LAFSSSQLRENSCWMFASRLGLTAADIRAWMGSFHKIRNVARYAARLGQSFGSSTETLSV 515
Query: 540 PVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGL-SHTPSAFQIRYGGYKG 598
++E+IPD+EV+ G Y FSDGIGKIS FAR+VA KCG TPSAFQIRY GYKG
Sbjct: 516 SSHEIEIIPDIEVSRGGTRYLFSDGIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKG 575
Query: 599 VIAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFE 658
V+AVD S +KLSLRRSM K+ES N L+V S+ PCFLNR++I+LLSTLGV D FE
Sbjct: 576 VVAVDPTSSKKLSLRRSMFKYESENTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFE 635
Query: 659 AMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHH 718
Q++ + L ML + A + L+ ++ ++ NIL +MLL GY+P+ EP+LSMML +
Sbjct: 636 RKQREAVDQLDAMLTDPLRAQEALELMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFR 695
Query: 719 ENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTR-EELESKDQSFFHRVD 777
++L +L+++ RI++P GR ++GC DET L +GQVFV+ + +R L F R
Sbjct: 696 ASKLLELRTKTRIFIPNGRSMMGCLDETRTLEHGQVFVKFSGSRFRNLYDSSDMFSERGR 755
Query: 778 DKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGG 837
+ ++KG V+V KNPCLHPGD+R+L+AV L VDC++FPQKG RPHPNECSG
Sbjct: 756 GQCYLIKGSVVVAKNPCLHPGDLRILKAVDVPALHH--MVDCVVFPQKGPRPHPNECSGS 813
Query: 838 DLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAIS 897
DLDGDI+F+ WD +LIP + PMDYT +DHDVT+EE+ ++F +Y++ND+LG I+
Sbjct: 814 DLDGDIYFVCWDPELIPSQQISPMDYTPEPPLQLDHDVTIEEVEEYFTNYIVNDSLGVIA 873
Query: 898 TAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKP 957
AH HAD++ KA S C+ LA S+AVDF KTG PAE+P L+ +E+PDFME+ DKP
Sbjct: 874 NAHTAHADKESLKAMSEPCVELARKFSIAVDFPKTGVPAEIPSNLRAREYPDFMEKPDKP 933
Query: 958 RYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMY 1017
Y S V+GKL+R D + S ++ +A YD D+EVDGFE ++ A +K Y
Sbjct: 934 SYESRNVIGKLFREVKDIAPRTSSIRSFTSDVARQCYDPDMEVDGFEDYIDDAFYYKSNY 993
Query: 1018 EEEMNALMNYYGASTEDEILTGN-LRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEW 1076
+ ++ LM YYG TE E+L+G+ ++ S+ ++ + + I ++ ++L+ EA+ W
Sbjct: 994 DYKLGNLMEYYGIKTEAELLSGSFMKMSKSFTKKRD------AEAIGMAVRSLKKEARSW 1047
Query: 1077 F-----GSSCKENEHPQLASAWYHVTYSPSY--C----KERMALLSFPWIVGDILLNIKS 1125
F G + ++ ASAWYHVTY +Y C R LSFPW V D L+ IK
Sbjct: 1048 FNEKGSGLDSQADDVDAKASAWYHVTYHHNYWGCYNEGMNRDHFLSFPWCVYDKLIQIKR 1107
Query: 1126 VNSRK 1130
NS +
Sbjct: 1108 RNSAR 1112
>gi|157152684|gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
Length = 1117
Score = 810 bits (2091), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 474/1146 (41%), Positives = 677/1146 (59%), Gaps = 72/1146 (6%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKA 64
T+ V P A+ + FLE+ G +V+ALE+ +S R +VQF + KS
Sbjct: 4 TIQVFGFPYLLSAEAVKTFLENHTGNGTVYALEV--KQSKGGRRAFAKVQFA--NNKSAE 59
Query: 65 QNLSLNDK-LVFNSQNLKISETHSDIVPRPVKAQHRVEDGV-LHVGVMCKEERLRVLQTF 122
+ L K L + LK E + IV QH DGV L+ G +++ VL +
Sbjct: 60 IIIDLASKGLYYGPSYLKAWEMKTYIVQPRTYVQHM--DGVTLNFGCQISDKKFAVLGS- 116
Query: 123 EGVRGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFSLD 182
+ V +++ F++ S+D +K+++ +E++ + V
Sbjct: 117 KVVSIKFGIGLKKIYFFL---------------SYGSTD--YKLQLSYENIWQVV-LHRP 158
Query: 183 EGATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKSIG 242
G +L +L P+IY+++ Y KE D WVRTTDF+ + IG
Sbjct: 159 YGQKAQFLLLQLSGAPRIYKRLE---------DSCYSFFKETPDDQWVRTTDFTPS-WIG 208
Query: 243 CSTSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTTSE---IVPLVKCRPGFN 299
S+S E NG+ + S F +YKE +IL+ G F + + +VP+V G
Sbjct: 209 LSSSLCLEFHNGVRLPNFSESFFYYKESANQVILQTGFTFSFSQKKLALVPIVHLPEGIE 268
Query: 300 LSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALM--VLQKLHKLKSICYDPVS 357
L +++LF+++SL+ + +A + Q++ A + L+KL+ LK CYDPV
Sbjct: 269 LPYKILFKISSLIQHGCFPGLALNFNFFQLVDPRRRNIACIEHALEKLYYLKECCYDPVR 328
Query: 358 FVKTQL-HVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNF 416
++ Q L R + +P S L D ++ R LVTP K+Y GPE+ SN V++N+
Sbjct: 329 WLTEQYDEYLKR--RQLPKSPSITL-DDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNY 385
Query: 417 AKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKH 476
++ +F+RV+FV+E+W K+ + L + R RT IY RIL+ L++G VIGDK
Sbjct: 386 SEDIDNFLRVSFVDEEWEKIHSTDL---LPRASTGNGVRTDIYLRILSTLRNGFVIGDKK 442
Query: 477 YEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQT 536
+EFLAFS+SQLR+NSVWMFAS ++A D+R WMG F +IR+V+K AAR+GQ F SS++T
Sbjct: 443 FEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGGFQQIRNVAKYAARLGQSFGSSRET 502
Query: 537 LVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGY 596
L V +VE+IPDV + G Y FSDGIGKIS FAR+VA KCGL +TPS FQIRYGGY
Sbjct: 503 LSVGRHEVEVIPDVVCSLHGTNYIFSDGIGKISADFARRVAVKCGLQYTPSCFQIRYGGY 562
Query: 597 KGVIAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEV 656
KGV+AVD S KLSLR SMLK+ES N L+V WS+ PC+LNR++++LLSTLGVKD+V
Sbjct: 563 KGVVAVDPYSSMKLSLRNSMLKYESNNIKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDV 622
Query: 657 FEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLS 716
FE Q + + L +L + A + L+ ++ ++ NIL +ML GY P+ EP+LSMML +
Sbjct: 623 FEQKQNEAVDQLDAILHDTLKAQEALELMSPGENTNILKEMLNCGYMPDAEPFLSMMLQT 682
Query: 717 HHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMT-REELESKDQSFFHR 775
++L DL++R RI++P GR ++GC DE+ L YGQVFV+ T T R + + F
Sbjct: 683 FRASKLLDLRTRSRIFIPNGRTMMGCLDESRTLEYGQVFVQFTGTGRRQFYEESHPF--- 739
Query: 776 VDDKTS-----IVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPH 830
+D S I++G V+V KNPCLHPGD+RVL AV L VDC++FPQKG+RPH
Sbjct: 740 -NDSGSTNCDFILEGNVVVAKNPCLHPGDIRVLRAVDVPALHHM--VDCVVFPQKGKRPH 796
Query: 831 PNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMIN 890
PNECSG DLDGDI+F+ WD DL+P PMDYT S +DHDVT+EE+ ++F +Y++N
Sbjct: 797 PNECSGSDLDGDIYFVCWDPDLVPPRQFQPMDYTPAPSTQLDHDVTIEEVEEYFTNYIVN 856
Query: 891 DTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDF 950
D+LG I+ AH+V ADR+PD A S C LA L S+AVDF KTG PAE+P L+PKE+PDF
Sbjct: 857 DSLGIIANAHVVFADREPDMAMSDPCKQLAQLFSIAVDFPKTGVPAEIPSQLRPKEYPDF 916
Query: 951 MEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVA 1010
ME+ DKP Y S V+GKL++ D Q S A ++ +A SYD D+ V+GFE ++ A
Sbjct: 917 MEKPDKPTYHSEKVIGKLFQKVKDKTPQASSIANFTMDVARKSYDGDMIVNGFEDYIDEA 976
Query: 1011 ESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQ 1070
+K Y+ ++ LM+YYG TE EIL+G + + R D I ++ ++L+
Sbjct: 977 FYYKSEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRRKD-----ADAIGVAVRSLR 1031
Query: 1071 NEAKEWFGSSCKENEHPQLASAWYHVTYSPSYCK------ERMALLSFPWIVGDILLNIK 1124
EA+ WF ++ ASAWYHVTY +Y +R +SFPW + D L+ IK
Sbjct: 1032 KEARTWFKRRSDIDDMLAKASAWYHVTYHHTYWGFYNEGLKRDHFISFPWCIYDQLIQIK 1091
Query: 1125 SVNSRK 1130
+RK
Sbjct: 1092 KAKARK 1097
>gi|350537951|ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycopersicum]
gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase [Solanum lycopersicum]
Length = 1114
Score = 809 bits (2090), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 471/1140 (41%), Positives = 678/1140 (59%), Gaps = 65/1140 (5%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKA 64
T+ V P A+ + FLE G +V ALE+ +S SR +VQF K
Sbjct: 4 TIQVFGFPYLLSAEVVKSFLEKYTGYGTVCALEV--KQSKGGSRAFAKVQFADNISADKI 61
Query: 65 QNLSLNDKLVFNSQNLKISETHSDIVPRPVKAQHRVEDGV-LHVGVMCKEERLRVLQTFE 123
L+ N++L F S LK E +DIV ++A DG+ L+ G +++ VL + E
Sbjct: 62 ITLA-NNRLYFGSSYLKAWEMKTDIVQ--LRAYVDQMDGITLNFGCQISDDKFAVLGSTE 118
Query: 124 GVRGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFSLDE 183
++F + K K S S+D +K+++ +E++ + V
Sbjct: 119 ----------VSIQFGIGLK------KFFFFLSSGSAD--YKLQLSYENIWQVV-LHRPY 159
Query: 184 GATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKSIGC 243
G +L +L P+IY+++ + Y KE D WVRTTDF + IG
Sbjct: 160 GQNAQFLLIQLFGAPRIYKRLE---------NSCYSFFKETPDDQWVRTTDFPPS-WIGL 209
Query: 244 STSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTT--SEIVPLVKCRPGFNLS 301
S+S + + G+ + F Y E + ++ L+ G F + S +VP V+ G ++
Sbjct: 210 SSSLCLQFRRGVRLPNFEESFFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEGISIP 269
Query: 302 HEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALM--VLQKLHKLKSICYDPVSFV 359
+++LF+++SLV + + A + +++ A + L+KL+ +K CYDPV ++
Sbjct: 270 YKILFKISSLVQHGCIPGPALNVYFFRLVDPRRRNVACIEHALEKLYYIKECCYDPVRWL 329
Query: 360 KTQL--HVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFA 417
Q ++ GR P S +D ++ R LVTP K+Y GPE+ SN V++N++
Sbjct: 330 TEQYDGYLKGRQ----PPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYS 385
Query: 418 KYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHY 477
+ +F+RV+FV+E+W KL + L G RT IY RIL+ L+ G VIGDK +
Sbjct: 386 EDIDNFLRVSFVDEEWEKLYSTDLLPKASTG---SGVRTNIYERILSTLRKGFVIGDKKF 442
Query: 478 EFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTL 537
EFLAFS+SQLR+NSVWMFAS ++A D+R WMG F++I++V+K AAR+GQ F SS++TL
Sbjct: 443 EFLAFSSSQLRDNSVWMFASRPGLTANDIRAWMGDFSQIKNVAKYAARLGQSFGSSRETL 502
Query: 538 VVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYK 597
V ++E+IPDV+V G +Y FSDGIGKIS FA +VA KCGL +TPSAFQIRYGGYK
Sbjct: 503 SVLRHEIEVIPDVKV--HGTSYVFSDGIGKISGDFAHRVASKCGLQYTPSAFQIRYGGYK 560
Query: 598 GVIAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVF 657
GV+ VD +S KLSLR+SM K+ES N L+V WS+ PC+LNR++I+LLSTLGVKDEV
Sbjct: 561 GVVGVDPDSSMKLSLRKSMSKYESDNIKLDVLGWSKYQPCYLNRQLITLLSTLGVKDEVL 620
Query: 658 EAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSH 717
E Q++ + L +L + A + L+ ++ ++ NIL ML GY+P+ EP+LSMML +
Sbjct: 621 EQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYKPDAEPFLSMMLQTF 680
Query: 718 HENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFH--R 775
++L DL++R RI++P GR ++GC DE+ L YGQVFV+ T S D F+ R
Sbjct: 681 RASKLLDLRTRSRIFIPNGRTMMGCLDESRTLEYGQVFVQFTGAGHGEFSDDLHPFNNSR 740
Query: 776 VDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECS 835
+ I+KG V+V KNPCLHPGD+RVL+AV L VDC++FPQKG+RPHPNECS
Sbjct: 741 STNSNFILKGNVVVAKNPCLHPGDIRVLKAVNVRALHH--MVDCVVFPQKGKRPHPNECS 798
Query: 836 GGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGA 895
G DLDGDI+F+ WD D+IP PM+Y S +DHDVT+EE+ ++F +Y++ND+LG
Sbjct: 799 GSDLDGDIYFVCWDQDMIPPRQVQPMEYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSLGI 858
Query: 896 ISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMERED 955
I+ AH+V ADR+PD A S C LA L S+AVDF KTG PAE+P L+PKE+PDFM++ D
Sbjct: 859 IANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPKTGVPAEIPSQLRPKEYPDFMDKPD 918
Query: 956 KPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKE 1015
K YIS V+GKL+R D Q S A ++ +A SYD D+EVDGFE ++ A +K
Sbjct: 919 KTSYISERVIGKLFRKVKDKAPQASSIATFTRDVARRSYDADMEVDGFEDYIDEAFDYKT 978
Query: 1016 MYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKE 1075
Y+ ++ LM+YYG TE EIL+G + + R + I ++ + L+ EA+
Sbjct: 979 EYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRRKD-----AEAISVAVRALRKEARA 1033
Query: 1076 WFGSSCKENEHPQLASAWYHVTYSPSY--CK----ERMALLSFPWIVGDILLNIKSVNSR 1129
WF ++ ASAWYHVTY P+Y C +R +SFPW V D L+ IK +R
Sbjct: 1034 WFKRRNDIDDMLPKASAWYHVTYHPTYWGCYNQGLKRAHFISFPWCVYDQLIQIKKDKAR 1093
>gi|142942402|gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 1115
Score = 807 bits (2084), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 474/1143 (41%), Positives = 676/1143 (59%), Gaps = 70/1143 (6%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKA 64
T+ V P A+ + LFLE G ++ ALE+ +S SR +VQF K
Sbjct: 4 TIQVFGFPNLLSAEVVKLFLEKHTGYGTICALEV--KQSKGGSRAFAKVQFVDNISADKI 61
Query: 65 QNLSLNDKLVFNSQNLKISETHSDIVPRPVKAQHRVEDGV-LHVGVMCKEERLRVLQTFE 123
NL+ + +L F S LK E +DIV H DG+ L+ G E++ VL + E
Sbjct: 62 INLA-SKRLYFGSSYLKAWEMKTDIVQLRAYVDHM--DGITLNFGCQISEDKFAVLGSTE 118
Query: 124 GVRGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFSLDE 183
V K +K S S+D +K+++ +E++ + V
Sbjct: 119 ----------------VSIKFGIGLKKFFFFLSSGSAD--YKLQLSYENIWQVV-LHRPY 159
Query: 184 GATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKSIGC 243
G +L +L P+IY+++ + Y KE D WVRTTDF+ + IG
Sbjct: 160 GQNAQFLLIQLFGAPRIYKRLE---------NSCYSFFKETPDDQWVRTTDFTPS-WIGL 209
Query: 244 STSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTT--SEIVPLVKCRPGFNLS 301
S+S + + G+ + F Y E + ++ L+ G F + S +VP V+ G +
Sbjct: 210 SSSLCLQFRRGVHLPNFQESFFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIP 269
Query: 302 HEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALM--VLQKLHKLKSICYDPVSFV 359
+++LF+++SLV + + A + +++ A + L+KL+ LK CYDPV ++
Sbjct: 270 YKILFKISSLVQHGCIPGPALNVYFFRLVDPQRRNVACIEQALEKLYYLKECCYDPVRWL 329
Query: 360 KTQL--HVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFA 417
Q ++ GR P S +D ++ R LVTP K+Y GPE+ SN V++N++
Sbjct: 330 TEQYDGYLKGRQ----PPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYS 385
Query: 418 KYASDFMRVTFVEEDWSKLPANAL--STSIQRGIFSKPYRTKIYSRILTILQDGIVIGDK 475
+ +F+RV+FV+E+W KL + L S GI RT IY RIL+ L+ G VIGDK
Sbjct: 386 EDIDNFLRVSFVDEEWEKLYSTELLPKASTGNGI-----RTNIYERILSTLRKGFVIGDK 440
Query: 476 HYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQ 535
+EFLAFS+SQLR+NSVWMFAS ++ D+R WMG F++I++V+K AAR+GQ F SS++
Sbjct: 441 KFEFLAFSSSQLRDNSVWMFASRRGLTTNDIRSWMGDFSQIKNVAKYAARLGQSFGSSRE 500
Query: 536 TLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGG 595
TL V ++E+IPDV+V G +Y FSDGIGKIS FAR+VA KCGL +TPSAFQIRYGG
Sbjct: 501 TLSVLRHEIEVIPDVKV--HGTSYVFSDGIGKISADFARRVASKCGLQYTPSAFQIRYGG 558
Query: 596 YKGVIAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDE 655
YKGV+AVD S KLSLR+SM K+ES N L+V WS+ PC+LNR++++LLSTLGVKD+
Sbjct: 559 YKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDD 618
Query: 656 VFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLL 715
V E Q++ + L +L + A + L+ ++ ++ NIL ML GY P+ EP+LSMML
Sbjct: 619 VLEQKQKEAVHQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQ 678
Query: 716 SHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFH- 774
+ ++L DL++R RI++P GR ++GC DE+ L YGQVFV+ T S+D F+
Sbjct: 679 TFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNN 738
Query: 775 -RVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNE 833
R + I+KG V+V KNPCLHPGD+RVL AV L VDC++FPQKG+RPHPNE
Sbjct: 739 SRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHH--MVDCVVFPQKGKRPHPNE 796
Query: 834 CSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTL 893
CSG DLDGDI+F+ WD D+IP M+Y S +DH+VT+EE+ ++F +Y++ND+L
Sbjct: 797 CSGSDLDGDIYFVCWDQDMIPPRQVQAMEYPPAPSIQLDHNVTIEEVEEYFTNYIVNDSL 856
Query: 894 GAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMER 953
G I+ AH+V ADR+PD A S C LA L S+AVDF KTG PAE+P L+PKE+PDFM++
Sbjct: 857 GIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPKTGVPAEIPSQLRPKEYPDFMDK 916
Query: 954 -EDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAES 1012
DK YIS V+GKL+R D Q S AI++ +A SYD DLEVDGFE ++ A
Sbjct: 917 PPDKTTYISERVIGKLFRKVKDKAPQASSIAIFTRDVARRSYDADLEVDGFEDYIDEAFD 976
Query: 1013 HKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNE 1072
+K Y+ ++ LM+YYG TE EIL+G + + R + I ++ + L+ E
Sbjct: 977 YKTEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRRKD-----AEAISVAVRALRKE 1031
Query: 1073 AKEWFGSSCKENEHPQLASAWYHVTYSPSY--CK----ERMALLSFPWIVGDILLNIKSV 1126
A+ WF ++ ASAWYHVTY P+Y C +R +SFPW V D L+ IK
Sbjct: 1032 ARTWFKRRNDIDDMLPKASAWYHVTYHPTYWGCYNQGLKRDHFISFPWCVYDQLIQIKKE 1091
Query: 1127 NSR 1129
+R
Sbjct: 1092 KAR 1094
>gi|4138282|emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]
Length = 1116
Score = 802 bits (2072), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 468/1149 (40%), Positives = 678/1149 (59%), Gaps = 79/1149 (6%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKA 64
T+ V P A+ + FLE+ G +V+ALE+ +S R +VQF + KS
Sbjct: 4 TIQVFGFPYLLSAEAVKKFLENHTGNGTVYALEV--KQSKGGRRAFAKVQFA--NNKSAE 59
Query: 65 QNLSLNDK-LVFNSQNLKISETHSDIVPRPVKAQHRVEDGV-LHVGVMCKEERLRVLQTF 122
+ L K L + LK E +DIV +H DGV L+ G +++ VL +
Sbjct: 60 FIIDLASKGLYYGPSYLKAWEMKTDIVQPRTYVEHM--DGVTLNFGCQISDKKFAVLGS- 116
Query: 123 EGVRGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFSLD 182
+ V +++ F++ S+D +K+++ +E++ + V
Sbjct: 117 KDVSIKFGIGLKKIYFFL---------------SHASAD--YKLQLSYENIWQVV-LHRP 158
Query: 183 EGATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKSIG 242
G +L +L P+IY+++ Y KE D WVRTTDF+ + IG
Sbjct: 159 YGQNAQFLLLQLFGAPRIYKRLE---------DSCYSFFKETPDDQWVRTTDFTPS-WIG 208
Query: 243 CSTSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTTSEI--VPLVKCRPGFNL 300
S+S E +NG+ + S F +YKE IL+ G F + ++ VP+V G L
Sbjct: 209 LSSSLCLEFRNGVQLPNFSESFFYYKESMNQFILQTGFTFSFSQKLALVPIVHLPEGIEL 268
Query: 301 SHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALM--VLQKLHKLKSICYDPVSF 358
+++LF+++SL+ + +A + Q++ A + L+KL+ LK CYDPV +
Sbjct: 269 PYKILFKISSLIQHGCFPGLALNFNFFQLVDPRRRNIACIEHALEKLYYLKECCYDPVRW 328
Query: 359 VKTQL--HVLGRNC-KSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKN 415
+ Q ++ GR KS P++ +D ++ R +VTP K+Y GPE+ SN V++N
Sbjct: 329 LTEQYDEYLKGRQLPKSPPIT-----LDDGLVYVRRVVVTPCKVYFCGPEVNVSNRVLRN 383
Query: 416 FAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDK 475
+++ ++F+RV+FV+E+W K+ + L + R RT IY RIL+ L++G +IGDK
Sbjct: 384 YSEDINNFLRVSFVDEEWEKIHSTDL---LPRASTGNGTRTDIYERILSTLRNGFIIGDK 440
Query: 476 HYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQ 535
+EFLAFS+SQLR+NSVWMFAS ++A D+R WMG F +IR+V+K AAR+GQ F SS++
Sbjct: 441 RFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFRQIRNVAKYAARLGQSFGSSRE 500
Query: 536 TLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGG 595
TL V +VE+IPDV + G Y FSDGIGKIS FA +V KCGL +TPS+FQIRYGG
Sbjct: 501 TLSVGRHEVEVIPDVACSLHGTNYIFSDGIGKISADFAHRVTIKCGLQYTPSSFQIRYGG 560
Query: 596 YKGVIAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDE 655
YKGV+AVD S KLSLR+SMLK+ES N L+V WS+ PC+LNR++++LLSTLGV D+
Sbjct: 561 YKGVVAVDPYSSMKLSLRKSMLKYESNNIKLDVLGWSKYQPCYLNRQLVTLLSTLGVIDD 620
Query: 656 VFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLL 715
V E Q + + L +L + A + L+ ++ ++ NIL +ML GY P+ EP+LSMML
Sbjct: 621 VLEQKQNEAVDQLDAILHDSLKAQEALELMSPGENTNILKEMLNCGYMPDAEPFLSMMLQ 680
Query: 716 SHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFF-- 773
+ ++L DL++R RI++P GR ++GC DE+ L YGQVFV+ + + + FF
Sbjct: 681 TFRASKLLDLRTRTRIFIPNGRTMMGCLDESRTLEYGQVFVQFS------GAGRRQFFEE 734
Query: 774 -HRVDDKTS-----IVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGE 827
H +D S I+KG V+V KNPCLHPGD+RVL AV L VDC++FPQKG+
Sbjct: 735 SHPFNDSGSANCDFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHM--VDCVVFPQKGK 792
Query: 828 RPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDY 887
RPHPNECSG DLDGDI+F+ WD DLIP MDYT + +DHDVT+EE+ ++F +Y
Sbjct: 793 RPHPNECSGSDLDGDIYFVCWDPDLIPPRQVQSMDYTPAPTTQLDHDVTIEEVEEYFTNY 852
Query: 888 MINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEF 947
+IND+LG I+ AH+V ADR+PD A S C LA L S+AVDF KTG PAE+P L+PKE+
Sbjct: 853 IINDSLGIIANAHVVFADREPDMAMSDPCKQLAQLFSIAVDFPKTGVPAEIPSQLRPKEY 912
Query: 948 PDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFL 1007
PDFME+ DKP Y S V+GKL++ + Q S A ++ +A SYD D+ VDGFE ++
Sbjct: 913 PDFMEKPDKPTYPSEKVIGKLFQKVKNKTPQASSIATFTRDVARKSYDSDMIVDGFEDYI 972
Query: 1008 GVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAK 1067
A +K Y+ ++ LM+YYG TE EIL+G + + R + I ++ +
Sbjct: 973 DEAFYYKSEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRRKD-----AEAIGVAVR 1027
Query: 1068 NLQNEAKEWFGSSCKENEHPQLASAWYHVTYSPSYCK------ERMALLSFPWIVGDILL 1121
L+ EA+ WF ++ ASAWYHVTY +Y +R +SFPW V D L+
Sbjct: 1028 CLRKEARAWFKRRSDIDDMLAKASAWYHVTYHHTYWGLYNEGLKRDHFISFPWCVYDQLI 1087
Query: 1122 NIKSVNSRK 1130
IK +RK
Sbjct: 1088 QIKKAKARK 1096
>gi|297849898|ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
gi|297338672|gb|EFH69089.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
Length = 1107
Score = 799 bits (2063), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/1139 (40%), Positives = 678/1139 (59%), Gaps = 69/1139 (6%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKA 64
T+ V P A+++ FLE G +V+A+++ + R VQFT+ + +
Sbjct: 4 TIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKG-GPRVFAIVQFTNEIYARQI 62
Query: 65 QNLSLNDKLVFNSQNLKISETHSDIVPRPVKAQHRVEDGVLHVGVMCKEERLRVLQTFEG 124
+ +L + L E DIVP+P + H + ++ G + L L + +
Sbjct: 63 ITGAAERRLYYGRSYLNAFEVEQDIVPKPRASLHNISGLKMYFGCQVSTQTLLTLWSAQD 122
Query: 125 VRGWLLPDRRRLEF-WVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFSLDE 183
V R+L F + W +QK +++E+ +E++ + + +
Sbjct: 123 VSVSFGIGMRKLHFSFSW------YQKD------------YRLELSYENIWQ-IDLHSPQ 163
Query: 184 GATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKSIGC 243
G + ++ ++ PKI++K P D Y + D W+RTTDF+ + IG
Sbjct: 164 GRSSKFLVIQVIGAPKIFEKEDQPINLLFGMMDFY---SDGSDEQWIRTTDFTSSSCIGQ 220
Query: 244 STSFFWEIKNGLLASDISNIFPFYKEDK-TDLILEEGEEFCTTS-EIVPLVKCRPGFNLS 301
ST+F E+ L D F Y E + + ++E G + + + ++VP+V PGF+L
Sbjct: 221 STAFCLELPVHLNVPDFRENFANYAEHRASTYLIESGSSYSSNANKLVPVVDPPPGFDLP 280
Query: 302 HEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALM--VLQKLHKLKSICYDPVSFV 359
E+LF+LN+LV N + A D ++ Q+L+ ++ AL+ L+KL L CY+P ++
Sbjct: 281 FEILFKLNTLVQNACLPGPALDLDVYQLLNPKKIDRALIDHCLEKLFYLGESCYEPARWL 340
Query: 360 KTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKY 419
+ Q L K +PLS L D ++ YR VTP ++Y GPE+ SN V+++++KY
Sbjct: 341 RKQYKELSSKGK-LPLSPTISL-DDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKY 398
Query: 420 ASDFMRVTFVEEDWSKLPANALS--TSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHY 477
++F+RV+FV+ED K+ + LS +S QR RTK+Y RI ++L+DGIVIGDK +
Sbjct: 399 INNFLRVSFVDEDLEKVRSMDLSPRSSTQR-------RTKLYDRIYSVLRDGIVIGDKKF 451
Query: 478 EFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTL 537
EFLAFS+SQLR NS WMFA + +++ +R WMG F+ IR+V+K AAR+GQ FSSS++TL
Sbjct: 452 EFLAFSSSQLRENSAWMFAPIEGLTSAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETL 511
Query: 538 VVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSH-TPSAFQIRYGGY 596
V ++E+IPDVE+ S G Y FSDGIGKIS FAR+VA+KCGL+ +PSAFQIRYGGY
Sbjct: 512 NVRSDEIEVIPDVEIISLGTRYVFSDGIGKISAEFARRVAKKCGLTEFSPSAFQIRYGGY 571
Query: 597 KGVIAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEV 656
KGV+AVD NS +KLSLR+SM KFES N L+V WS+ PC++NR++I+LLSTLGV+D V
Sbjct: 572 KGVVAVDPNSSKKLSLRKSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVEDSV 631
Query: 657 FEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLS 716
FE Q++ + L +L + A + L + ++ NIL ++L GY+P+ EP+LSMML +
Sbjct: 632 FEKKQREVVDRLDAILTDPLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQN 691
Query: 717 HHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRV 776
++L +L+++ RI++ GR ++GC DET L YGQV V+ +
Sbjct: 692 FRASKLLELRTKTRIFISGGRSMMGCLDETRTLEYGQVVVQYSDPMRP------------ 739
Query: 777 DDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSG 836
+ I+ G V+V KNPCLHPGDVRVLEAV L VDC++FPQKG RPHPNECSG
Sbjct: 740 -GRRFIITGPVVVAKNPCLHPGDVRVLEAVNVPALNH--MVDCVVFPQKGLRPHPNECSG 796
Query: 837 GDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAI 896
DLDGDI+F+ WD +LIP T PMDYT ++I+DHDVT+EE+ ++F +Y++ND+LG I
Sbjct: 797 SDLDGDIYFVCWDQELIPPRTSEPMDYTPEPAQILDHDVTIEEVEEYFANYIVNDSLGII 856
Query: 897 STAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDK 956
+ AH AD++P KA S C+ LA S+AVDF KTG AE+P L KE+PDFME+ DK
Sbjct: 857 ANAHTAFADKEPLKAFSDPCIELARKFSVAVDFPKTGVAAEIPQHLYVKEYPDFMEKPDK 916
Query: 957 PRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEM 1016
P Y S V+GKL+R + + S ++ +A SYD D+EVDGFE ++ A +K
Sbjct: 917 PTYESKNVIGKLFREVKERAPPLISIKSFTLDVALKSYDKDMEVDGFEEYVDEAFHYKAN 976
Query: 1017 YEEEMNALMNYYGASTEDEILTGN-LRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKE 1075
Y+ ++ LM+YYG TE EIL+G +R S+ +R + + I + + L+ E
Sbjct: 977 YDFKLGNLMDYYGIKTEAEILSGGIMRMSKSFTKRRD------AESIGRAVRALRKETLS 1030
Query: 1076 WFGSSCKENEHPQLASAWYHVTYSPSYCK------ERMALLSFPWIVGDILLNIKSVNS 1128
F ++ +ENE + ASAWYH+TY SY R LSF W V D L+ IK N+
Sbjct: 1031 LFNATEEENESAK-ASAWYHITYHSSYWGLYNEGLNRDHFLSFAWCVYDKLVRIKKTNA 1088
>gi|146762448|gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 798 bits (2062), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/1137 (40%), Positives = 666/1137 (58%), Gaps = 73/1137 (6%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKS-RGIGRVQFTSLDFKSK 63
T+ V A ++ FLE G+ +V+AL+I R + KS R VQFT
Sbjct: 4 TIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKI---RQHKKSGRAFAIVQFTRSSDAGL 60
Query: 64 AQNLSLNDKLVFNSQNLKISETHSDIVPRPVKAQHRVEDGVLHVGVMCKEERLRVLQTFE 123
L+ N +L + LK E +DIVP+P H +E ++ G EE+ VL +
Sbjct: 61 IIRLA-NQRLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFGCQVSEEKFYVLWKAD 119
Query: 124 GVRGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFSLDE 183
V R+LEF + C S +K+E+ +E++ + +
Sbjct: 120 NVTLNFGTGMRKLEFL------------LSYCSSK-----YKLELFYENIWQ-IELRCPH 161
Query: 184 GATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKSIGC 243
T +L +L P+IY+K P F + K+ D WVRTTDF+ + IG
Sbjct: 162 SQTSKHLLIQLFGAPRIYEK-EVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQ 220
Query: 244 STSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTTSEIVPLVKCRPGFNLSHE 303
S+ + E+ + L + F +YKE++ L+LE G + +VP+V +L E
Sbjct: 221 SSVLWLELPHNLQLPNFRENFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFE 280
Query: 304 VLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALM--VLQKLHKLKSICYDPVSFVKT 361
+LF++N LV N + A D +++ M + L+KL+ L+ CY+P ++
Sbjct: 281 ILFKVNLLVQNGCIPGPALDDTFYRLVDPCRMHKVYIDHALEKLYYLRECCYEPSRWLFE 340
Query: 362 QLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYAS 421
+ R+ K S +D ++ R +TP ++Y GPE+ SN V++ F
Sbjct: 341 EYKNFSRSRKY--QGSPTISLDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDID 398
Query: 422 DFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLA 481
+F+R++FV+E+ K+ ST++Q ++ RT IY RIL+ L++GIVIG+K +EFLA
Sbjct: 399 NFLRISFVDEELEKIH----STNVQ----ARGRRTGIYKRILSTLRNGIVIGNKRFEFLA 450
Query: 482 FSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPV 541
FS+SQLR NS WMFAS ++A D+R WMG F+KIR+V+K AAR+GQ FSSS +TL V
Sbjct: 451 FSSSQLRENSAWMFASRKGLTAADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSK 510
Query: 542 QDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSH-TPSAFQIRYGGYKGVI 600
++ +IPD+E+ DG Y FSDGIGKIS FA++VA KC L TPSAFQIR GG+KGV+
Sbjct: 511 DEINLIPDIEIMKDGIKYVFSDGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVV 570
Query: 601 AVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAM 660
A+D S KLSLR+SM K+ES N L+V WS+ PCFLNR++I+LLSTLGV D FE
Sbjct: 571 AIDPTSSWKLSLRKSMEKYESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDRAFEKK 630
Query: 661 QQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHEN 720
Q++ + L +L + A + L+ ++ ++ NIL +MLL GY+P+ EP+LSMML + +
Sbjct: 631 QREVVDQLNALLTDPLEAQEALELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRAS 690
Query: 721 QLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKT 780
+L +L+++ RI+V KGR ++GC DET LNYGQVFV+ + +R E +
Sbjct: 691 KLLELRTKARIFVQKGRSMMGCLDETRTLNYGQVFVQFSGSRSE--------------RR 736
Query: 781 SIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLD 840
IV+GKV+V KNPCLHPGDVRVL AV L VDC++FPQKG RPHPNECSG DLD
Sbjct: 737 FIVQGKVIVAKNPCLHPGDVRVLRAVNVPDLHH--MVDCVVFPQKGTRPHPNECSGSDLD 794
Query: 841 GDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAH 900
GD++F+ WD +LIP + PMDY+ + +DH+VT+EEI ++F +Y++ND+LG IS AH
Sbjct: 795 GDVYFVCWDPELIPYKQIDPMDYSPASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAH 854
Query: 901 LVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYI 960
ADR+PDKA S CL LA L S+AVDF KTG PAE+P L+ KE+PDFME+ DKP Y
Sbjct: 855 TAFADREPDKAMSRPCLELAKLFSIAVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPSYQ 914
Query: 961 SFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEE 1020
S V+GKL+R + S + + + YD D+EV+GFE ++ A HK Y+ +
Sbjct: 915 SHNVIGKLFREVKNLAPNECSIKFLTREKMQRFYDPDMEVEGFEDYIDDAFFHKSKYDYK 974
Query: 1021 MNALMNYYGASTEDEILTGNL--RNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWF- 1077
+ LM+YYG TE EIL G + +R+ +RD + I ++ ++L+ EA+ WF
Sbjct: 975 LGNLMDYYGVKTEAEILGGGIMKMSRSFTKKRD-------AEAISMAVRSLRKEARSWFN 1027
Query: 1078 --GSSCKE--NEHPQLASAWYHVTYSPSYCKE------RMALLSFPWIVGDILLNIK 1124
GS E ++ ASAWY+VTY PSY + R LSFPW V D L+ IK
Sbjct: 1028 EKGSELDEEIDDAYAKASAWYYVTYHPSYWGQYNEGMNRDHFLSFPWCVYDKLIQIK 1084
>gi|383100937|emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis halleri subsp. halleri]
Length = 1107
Score = 797 bits (2059), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/1139 (40%), Positives = 675/1139 (59%), Gaps = 69/1139 (6%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKA 64
T+ V P A+++ FLE G +V+A+++ + R VQFT+ + +
Sbjct: 4 TIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKG-GPRVFAIVQFTNERYARQI 62
Query: 65 QNLSLNDKLVFNSQNLKISETHSDIVPRPVKAQHRVEDGVLHVGVMCKEERLRVLQTFEG 124
+ +L + L E DIVP+P + H + ++ G ++ L + +
Sbjct: 63 ITGAAERRLYYGRSYLNAFEVDQDIVPKPRASLHNISGLKMYFGCQVSTQKFLTLWSAQD 122
Query: 125 VRGWLLPDRRRLEF-WVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFSLDE 183
V R+L F + W +QK +++E+ +E++ + + +
Sbjct: 123 VCVSFGIGMRKLHFSFSW------YQKD------------YRLELSYENIWQ-IDLHSPQ 163
Query: 184 GATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKSIGC 243
G + ++ ++ PKI++K P D Y + D W+RTTDF+ + IG
Sbjct: 164 GRSSKFLVIQVIGAPKIFEKEDQPINLLFGMMDFY---SDGSDEQWIRTTDFTSSSCIGQ 220
Query: 244 STSFFWEIKNGLLASDISNIFPFYKEDK-TDLILEEGEEFCTTS-EIVPLVKCRPGFNLS 301
ST+F E+ L D F Y E + + ++E G + + + ++VP+V PGF+L
Sbjct: 221 STAFCLELPVHLNVPDFRENFANYAEHRASPFLIESGSSYSSNANKLVPVVDPPPGFDLP 280
Query: 302 HEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALM--VLQKLHKLKSICYDPVSFV 359
E+LF+LN+LV N + A D ++ Q+L+ AL+ L+KL L CY+P ++
Sbjct: 281 FEILFKLNTLVQNACLPGPALDLDVYQLLNPKKYNRALIDHCLEKLFHLGESCYEPARWL 340
Query: 360 KTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKY 419
+ Q L K +PLS L D ++ YR VTP ++Y GPE+ SN V+++++KY
Sbjct: 341 RKQYKELSSKGK-LPLSPTISL-DDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKY 398
Query: 420 ASDFMRVTFVEEDWSKLPANALS--TSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHY 477
++F+RV+FV+ED K+ + LS +S QR RTK+Y RI ++L+DGIVIGDK +
Sbjct: 399 INNFLRVSFVDEDLEKVRSMDLSPRSSTQR-------RTKLYDRIYSVLRDGIVIGDKKF 451
Query: 478 EFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTL 537
EFLAFS+SQLR NS WMFA D +++ +R WMG F+ IR+V+K AAR+GQ FSSS++TL
Sbjct: 452 EFLAFSSSQLRENSAWMFAPIDGLTSAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETL 511
Query: 538 VVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSH-TPSAFQIRYGGY 596
V ++E+IPDVE+ S G Y FSDGIGKIS FAR+VA+KCGL+ +PSAFQIRYGGY
Sbjct: 512 NVRSDEIEVIPDVEIISLGTRYVFSDGIGKISAEFARRVAKKCGLTEFSPSAFQIRYGGY 571
Query: 597 KGVIAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEV 656
KGV+AVD NS +KLSLR+SM KFES N L+V WS+ PC++NR++I+LLSTLGVKD V
Sbjct: 572 KGVVAVDPNSSKKLSLRKSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVKDSV 631
Query: 657 FEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLS 716
F+ Q++ + L +L + A + L + ++ NIL ++L GY+P+ EP+LSMML +
Sbjct: 632 FKKKQREVVDRLDAILTDPLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQN 691
Query: 717 HHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRV 776
++L +L+++ RI++ GR ++GC DET L YGQV V+ +
Sbjct: 692 FRASKLLELRTKTRIFISGGRSMMGCLDETRTLEYGQVVVQYSDPMRP------------ 739
Query: 777 DDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSG 836
+ I+ G V+V KNPCLHPGDVRVLEAV L VDC++FPQKG RPHPNECSG
Sbjct: 740 -GRRFIITGPVVVAKNPCLHPGDVRVLEAVNVPALNH--MVDCVVFPQKGLRPHPNECSG 796
Query: 837 GDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAI 896
DLDGDI+F+ WD +LIP T PMDYT ++I+DHDVT+EE+ ++F +Y++ND+LG I
Sbjct: 797 SDLDGDIYFVCWDQELIPPRTSEPMDYTPEPAQILDHDVTIEEVEEYFANYIVNDSLGII 856
Query: 897 STAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDK 956
+ AH AD++P KA S C+ LA S+AVDF KTG AE+P L KE+PDFME+ DK
Sbjct: 857 ANAHTAFADKEPLKAFSDPCIELARKFSVAVDFPKTGVAAEIPQHLHVKEYPDFMEKPDK 916
Query: 957 PRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEM 1016
P Y S V+GKL+R + + S ++ +A SYD D+EVDGFE ++ A +K
Sbjct: 917 PTYESKNVIGKLFREVKERAPPLISIKSFTLDVALKSYDKDMEVDGFEEYVDEAFHYKAN 976
Query: 1017 YEEEMNALMNYYGASTEDEILTGN-LRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKE 1075
Y+ ++ LM+YYG TE EIL+G +R S+ +R + + I + + L+ E
Sbjct: 977 YDFKLGNLMDYYGIKTEAEILSGGIMRMSKSFTKRRD------AESIGRAVRALRKETLS 1030
Query: 1076 WFGSSCKENEHPQLASAWYHVTYSPSYCK------ERMALLSFPWIVGDILLNIKSVNS 1128
F ++ +ENE + ASAWYHVTY SY R L F W V D L+ IK N+
Sbjct: 1031 LFNATEEENESAK-ASAWYHVTYHSSYWGLYNEGLNRDHFLIFAWCVYDKLVRIKKTNA 1088
>gi|225424397|ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
Length = 1121
Score = 797 bits (2058), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 463/1139 (40%), Positives = 668/1139 (58%), Gaps = 65/1139 (5%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKA 64
T+ V P A ++ FLE G+ ++ ALEI RS S +VQFTS +
Sbjct: 4 TIQVYGFPSIVSADEIKEFLEKYTGEGTIEALEIKQPRSG-ASMTHAKVQFTSFELAEFI 62
Query: 65 QNLSLNDKLVFNSQN-LKISETHSDIVPRPVKAQHRVEDGVLHVGVMCKEERLRVLQTFE 123
++L K V+ +N LK E DI+P+P H ++ LH G +ER VL
Sbjct: 63 --ITLCKKKVWYGRNYLKAREMDLDIIPKPRAFLHSMDRITLHFGCQMSDERFCVLWKAI 120
Query: 124 GVRGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFSLDE 183
V R+ F++ G +E +K+E+ +E++ + +
Sbjct: 121 NVSVKFGSGLRKFYFFL--------SHGSEE---------YKLELSYENIWQ-IQLQHPR 162
Query: 184 GATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKSIGC 243
G +L +L P+IY+K P Y+ KE D WVR DF+ + IG
Sbjct: 163 GQITKFLLIQLLGAPQIYEK--------DVPVLSYYF-KEAPDDQWVREIDFTPSCFIGQ 213
Query: 244 STSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTTSEIVPLVKCRPGFNLSHE 303
S + E+ G + F +YKE+ ILE G + +VP++ G +L +
Sbjct: 214 SFALCLELPYGSQLPNFRENFAYYKENDGKFILESGSSYSHNLHLVPILGPPQGSSLPFQ 273
Query: 304 VLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALM--VLQKLHKLKSICYDPVSFVKT 361
+LF++N+LV N +S D +++ + + L+KL+ LK CY+PV ++
Sbjct: 274 ILFKINTLVQNGCLSGPTLDTSFFRLVDPERFPISFIEHALEKLYHLKECCYEPVRWLSE 333
Query: 362 QLHVLGRNCKSIPLSSHKRL-IDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYA 420
Q R P++ + +D ++ R +TP K+Y GPE+ SN V++N+ +
Sbjct: 334 QY----RTYVKKPVAGSPAISLDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDI 389
Query: 421 SDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFL 480
+F+RV+F++E+ K+ + +S + + + RT +Y RIL+ILQ+GIVIGDK ++FL
Sbjct: 390 DNFLRVSFLDENLEKIHSTVISPRMSK----EGRRTGVYRRILSILQNGIVIGDKKFDFL 445
Query: 481 AFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVP 540
AFS+SQLR+NS WMFAS ++A ++R WMG F++IR+V+K AAR+GQ FSSSK+TL V
Sbjct: 446 AFSSSQLRDNSAWMFASRPGLTAAEIRSWMGDFSQIRNVAKYAARLGQSFSSSKETLKVA 505
Query: 541 VQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGL-SHTPSAFQIRYGGYKGV 599
++E IPD+E+ TY FSDGIGKIS A +VA KCG S TPSAFQIRYGGYKGV
Sbjct: 506 KDEIENIPDIEIHKGRTTYVFSDGIGKISPQLAHRVAIKCGCKSSTPSAFQIRYGGYKGV 565
Query: 600 IAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEA 659
+AVD S RKLSLR+SM K+ES N L+V WS+ P FLNR++I+LLSTLGVKD VFE
Sbjct: 566 VAVDPTSSRKLSLRKSMFKYESDNTNLDVLAWSKYQPSFLNRQLITLLSTLGVKDHVFEK 625
Query: 660 MQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHE 719
Q+ + L +L + AA + L+ ++ ++ N+L +ML+ GY+P+ EP+LSMML +
Sbjct: 626 KQRAAVDQLDTILKDPVAAQEALELMSPGENTNVLKEMLMCGYKPDAEPFLSMMLQTFRA 685
Query: 720 NQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDK 779
+L +L+++ RI+VP GR ++GC DET L YG+VFV+++ T D F
Sbjct: 686 AKLLELRTKTRIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFRGSGSH 745
Query: 780 TS--IVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGG 837
I++GK++V KNPCLHPGDVRVL AV L VDC++FPQKG+RPHPNECSG
Sbjct: 746 HDNFILEGKIVVAKNPCLHPGDVRVLWAVNVPTLHH--MVDCVVFPQKGKRPHPNECSGS 803
Query: 838 DLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAIS 897
DLDGDI+F+ WD DLIP + PMDYT ++++DHDV +EE+ ++F +Y++ND+LG I+
Sbjct: 804 DLDGDIYFVCWDRDLIPPQQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIVNDSLGIIA 863
Query: 898 TAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKP 957
AH V AD++ DKA C LA L S+AVDF KTG PAE+P L+ KE+PDFME+ DKP
Sbjct: 864 NAHTVFADKEYDKAYCDPCTELAKLFSIAVDFPKTGVPAEIPRNLRVKEYPDFMEKADKP 923
Query: 958 RYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMY 1017
Y S V+GKL+R D + ++ +A SYD D+EV GFE ++ A +K Y
Sbjct: 924 TYESQSVIGKLFREVKDIAPHNCNIRSFTRDVARQSYDPDMEVVGFEDYVSDAFYYKSEY 983
Query: 1018 EEEMNALMNYYGASTEDEILTGN-LRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEW 1076
+ ++ LM+YYG TE EIL+G+ +R S+ +R + + I L+ K+L+ EA+ W
Sbjct: 984 DYKLGNLMDYYGIKTESEILSGSIMRMSKSFDRRKD------AEAIGLAVKSLRKEARTW 1037
Query: 1077 FGSSCKENEHP-----QLASAWYHVTYSPSY--C----KERMALLSFPWIVGDILLNIK 1124
F E + ASAWYHVTY P Y C +R LSFPW V D L++ K
Sbjct: 1038 FNKMGSETDSEADDVYAKASAWYHVTYHPDYWGCYNEGMDRDHFLSFPWCVYDKLIHTK 1096
>gi|197223666|gb|ACH53361.1| RNA-directed RNA polymerase 1b [Hordeum vulgare]
Length = 1115
Score = 795 bits (2053), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/1140 (40%), Positives = 673/1140 (59%), Gaps = 72/1140 (6%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRS-NWKSRGIGRVQFTSLDFKSK 63
T+ VS P T A + LE +G +VFA+++ ++ + SR VQF S S
Sbjct: 5 TLQVSGFPSTVNADHVKDLLEQIVGTGNVFAVKLRPPKNISANSRSFAIVQFQSEAHASL 64
Query: 64 AQNLSLNDKLVFNSQNLKISETHSDIVPRPVKAQHRVEDGVLHVGVMCKEERLRVLQTFE 123
N + + L S LK DIVPRP ++ LH G + KE L VL +
Sbjct: 65 VLNAAQRNALRSGSHYLKARYAERDIVPRPRTTIFNLQGAKLHFGCLLKERVLSVLWSGT 124
Query: 124 GVRGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFSLDE 183
V +EF G K I C +S +K+E+ +E + E +
Sbjct: 125 NVS---------VEF-------GFAMKRIDFCLIYNSKK-YKLELSYESIWE-IQLHRPP 166
Query: 184 GATVNGILFKLKYGPKIYQ---KVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKS 240
G +L +++ PKIY+ ++SG S + ++ ++D D W RTTDF+ + S
Sbjct: 167 GLQKKFLLIQVQAAPKIYEQNIRLSG----SMYDDPLFNYFRDDTDDQWTRTTDFTPSAS 222
Query: 241 IGCSTSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTTSEIVPLVKCRPGFNL 300
IG S E+ + +I F +Y+ L+ G + + + VP+VK ++
Sbjct: 223 IGQSYILCLELPHICYLPNIREYFVYYEVHNDIFNLQPGYSYSSNTCFVPVVKSHYFTDV 282
Query: 301 SHEVLFQLNSLVHNQKVSLVAADAELIQILSG--LSMETALMVLQKLHKLKSICYDPVSF 358
+E+LF++N LV N +S D +++S ++ L+K+ LK C +P ++
Sbjct: 283 PYEILFKINHLVQNGTLSGPTLDDNFYRLVSPGYERIDRIKRALEKMSYLKKTCLNPTNW 342
Query: 359 VKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAK 418
+ Q + R+ + S + L D ++ YR +TP K+Y GPE+ SN VV+N+A
Sbjct: 343 LSEQYKKMRRS--RVLTSPNITLDDDGLVYVYRVQITPAKVYFYGPEINVSNRVVRNYAA 400
Query: 419 YASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYE 478
+F+R++FV+ED KL + LS G ++ RT +Y+R+L++L +GI IGDKH++
Sbjct: 401 DLDNFLRISFVDEDCEKLRSTDLSQRSAPGNNTR--RTALYNRVLSVLSNGITIGDKHFD 458
Query: 479 FLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLV 538
FLAFS+SQLR+NS WMFAS +SA D+R WMG F IR+V+K AAR+GQ FSSS +TL
Sbjct: 459 FLAFSSSQLRDNSAWMFASRPGLSASDIREWMGNFRNIRNVAKYAARLGQSFSSSTETLK 518
Query: 539 VPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSH-TPSAFQIRYGGYK 597
V +V+ PDV ++G Y FSDGIG IS FA +V++KC L+ TPSAFQIRYGGYK
Sbjct: 519 VHKYEVKEAPDV---TNGTEYVFSDGIGTISADFADEVSKKCNLTRFTPSAFQIRYGGYK 575
Query: 598 GVIAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVF 657
GV+A+D S KLSLR+SM KF+S N L+V +S+ PCFLNR++I+LLSTLGV D +F
Sbjct: 576 GVVAIDPTSQWKLSLRKSMSKFQSDNITLDVLAYSKYQPCFLNRQLITLLSTLGVIDSIF 635
Query: 658 EAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSH 717
E QQ+ + L +M+ +AA+D ++ + + NI+ ++LL GY P+VEPY+SM+L +
Sbjct: 636 ELKQQEAVQQLNRMVAEPQAAIDAIELMPMGEITNIVKELLLCGYRPDVEPYVSMLLQTF 695
Query: 718 HENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVD 777
++L +LK+R RI+VPKGR ++GC DET L YGQVF++ + + + D
Sbjct: 696 RASKLLELKTRSRIFVPKGRAMMGCLDETRTLKYGQVFIQASNSAD-------------D 742
Query: 778 DKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGG 837
S+V GKV+V KNPC+HPGD+R+L+AV+ L V+C++FPQ G RPHPNECSG
Sbjct: 743 RGKSVVTGKVIVAKNPCIHPGDIRILQAVHSPLLGHM--VNCVVFPQLGPRPHPNECSGS 800
Query: 838 DLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAIS 897
DLDGDI+F+SWD DLIP PMDYT + +DHDV +EE+H++F +Y++N++LG I+
Sbjct: 801 DLDGDIYFVSWDPDLIPTRMVAPMDYTPAPTETLDHDVMIEEVHEYFTNYIVNESLGIIA 860
Query: 898 TAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKP 957
AH+V ADR KA S++C+ LA L S+AVD+ KTG PA++P L KE+PDFME+ D+
Sbjct: 861 NAHVVFADRQSLKAESTQCIKLAELFSIAVDYPKTGVPAQIPHELHVKEYPDFMEKLDRA 920
Query: 958 RYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMY 1017
Y+S GV+GKLYR IR +++ +A SYD DL VDG++ ++ A KE Y
Sbjct: 921 TYVSEGVIGKLYREIKKQNPHIRH---FTKDVATLSYDTDLIVDGYQDYITEAVWFKEEY 977
Query: 1018 EEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWF 1077
+ ++ LM +YG ++E EI++G + A + + D I L+ K+L+ EA+ WF
Sbjct: 978 DFKLGNLMEHYGINSEAEIISGCILKMAKNFTKKSD-----ADAIRLAVKSLRKEARSWF 1032
Query: 1078 ---GSSCKENEHPQL---ASAWYHVTYSPSY--C-----KERMALLSFPWIVGDILLNIK 1124
GS + H L ASAWYHVTY P Y C R L+SFPW V D L+ IK
Sbjct: 1033 SEMGSDESGDGHKALVAKASAWYHVTYHPQYWGCYNKGYDHRPHLISFPWCVYDKLILIK 1092
>gi|40794965|gb|AAR91036.1| RNA-directed RNA polymerase 1 [Hordeum vulgare subsp. vulgare]
Length = 1115
Score = 795 bits (2052), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/1140 (40%), Positives = 673/1140 (59%), Gaps = 72/1140 (6%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRS-NWKSRGIGRVQFTSLDFKSK 63
T+ VS P T A + LE +G +VFA+++ ++ + SR VQF S S
Sbjct: 5 TLQVSGFPSTVNADHVKDLLEQIVGTGNVFAVKLRPPKNISANSRSFAIVQFQSEAHASL 64
Query: 64 AQNLSLNDKLVFNSQNLKISETHSDIVPRPVKAQHRVEDGVLHVGVMCKEERLRVLQTFE 123
N + + L S LK DIVPRP ++ LH G + KE L VL +
Sbjct: 65 VLNAAQRNALRSGSHYLKARYAERDIVPRPRTTIFNLQGAKLHFGCLLKERVLSVLWSGT 124
Query: 124 GVRGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFSLDE 183
V +EF G K I C +S +K+E+ +E + E +
Sbjct: 125 DVS---------VEF-------GFAMKRIDFCLIYNSKK-YKLELSYESIWE-IQLHRPP 166
Query: 184 GATVNGILFKLKYGPKIYQ---KVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKS 240
G +L +++ PKIY+ ++SG S + ++ ++D D W RTTDF+ + S
Sbjct: 167 GLQKKFLLIQVQAAPKIYEQNIRLSG----SMYDDPLFNYFRDDTDDQWTRTTDFTPSAS 222
Query: 241 IGCSTSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTTSEIVPLVKCRPGFNL 300
IG S E+ + +I F +Y+ L+ G + + + VP+VK ++
Sbjct: 223 IGQSYILSLELPHICYLPNIREYFVYYEVHNDIFNLQPGYSYSSNTCFVPVVKSHYFTDV 282
Query: 301 SHEVLFQLNSLVHNQKVSLVAADAELIQILSG--LSMETALMVLQKLHKLKSICYDPVSF 358
+E+LF++N LV N +S D +++S ++ L+K+ LK C +P ++
Sbjct: 283 PYEILFKINHLVQNGTLSGPTLDDNFYRLVSPGYERIDRIKRALEKMSYLKKTCLNPTNW 342
Query: 359 VKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAK 418
+ Q + R+ + S + L D ++ YR +TP K+Y GPE+ SN VV+N+A
Sbjct: 343 LSEQYKKMRRS--RVLTSPNITLDDDGLVYVYRVQITPAKVYFYGPEINVSNRVVRNYAA 400
Query: 419 YASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYE 478
+F+R++FV+ED KL + LS G ++ RT +Y+R+L++L +GI IGDKH++
Sbjct: 401 DLDNFLRISFVDEDCEKLRSTDLSQRSAPGNNTR--RTALYNRVLSVLSNGITIGDKHFD 458
Query: 479 FLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLV 538
FLAFS+SQLR+NS WMFAS +SA D+R WMG F IR+V+K AAR+GQ FSSS +TL
Sbjct: 459 FLAFSSSQLRDNSAWMFASRPGLSASDIREWMGNFRNIRNVAKYAARLGQSFSSSTETLK 518
Query: 539 VPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSH-TPSAFQIRYGGYK 597
V +V+ PDV ++G Y FSDGIG IS FA +V++KC L+ TPSAFQIRYGGYK
Sbjct: 519 VHKYEVKEAPDV---TNGTEYVFSDGIGTISADFADEVSKKCNLTRFTPSAFQIRYGGYK 575
Query: 598 GVIAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVF 657
GV+A+D S KLSLR+SM KF+S N L+V +S+ PCFLNR++I+LLSTLGV D +F
Sbjct: 576 GVVAIDPTSQWKLSLRKSMSKFQSDNITLDVLAYSKYQPCFLNRQLITLLSTLGVIDSIF 635
Query: 658 EAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSH 717
E QQ+ + L +M+ +AA+D ++ + + NI+ ++LL GY P+VEPY+SM+L +
Sbjct: 636 ELKQQEAVQQLNRMVAEPQAAIDAIELMPMGEITNIVKELLLCGYRPDVEPYVSMLLQTF 695
Query: 718 HENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVD 777
++L +LK+R RI+VPKGR ++GC DET L YGQVF++ + + + D
Sbjct: 696 RASKLLELKTRSRIFVPKGRAMMGCLDETRTLKYGQVFIQASNSAD-------------D 742
Query: 778 DKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGG 837
S+V GKV+V KNPC+HPGD+R+L+AV+ L V+C++FPQ G RPHPNECSG
Sbjct: 743 RGKSVVTGKVIVAKNPCIHPGDIRILQAVHSPLLGHM--VNCVVFPQLGPRPHPNECSGS 800
Query: 838 DLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAIS 897
DLDGDI+F+SWD DLIP PMDYT + +DHDV +EE+H++F +Y++N++LG I+
Sbjct: 801 DLDGDIYFVSWDPDLIPTRMVAPMDYTPAPTETLDHDVMIEEVHEYFTNYIVNESLGIIA 860
Query: 898 TAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKP 957
AH+V ADR KA S++C+ LA L S+AVD+ KTG PA++P L KE+PDFME+ D+
Sbjct: 861 NAHVVFADRQSLKAESTQCIKLAELFSIAVDYPKTGVPAQIPHELHVKEYPDFMEKLDRA 920
Query: 958 RYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMY 1017
Y+S GV+GKLYR IR +++ +A SYD DL VDG++ ++ A KE Y
Sbjct: 921 TYVSEGVIGKLYREIKKQNPHIRH---FTKDVATLSYDTDLIVDGYQDYITEAVWFKEEY 977
Query: 1018 EEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWF 1077
+ ++ LM +YG ++E EI++G + A + + D I L+ K+L+ EA+ WF
Sbjct: 978 DFKLGNLMEHYGINSEAEIISGCILKMAKNFTKKSD-----ADAIRLAVKSLRKEARSWF 1032
Query: 1078 ---GSSCKENEHPQL---ASAWYHVTYSPSY--C-----KERMALLSFPWIVGDILLNIK 1124
GS + H L ASAWYHVTY P Y C R L+SFPW V D L+ IK
Sbjct: 1033 SEMGSDESGDGHKALVAKASAWYHVTYHPQYWGCYNEGYDHRPHLISFPWCVYDKLILIK 1092
>gi|142942515|gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 1065
Score = 791 bits (2042), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/1109 (41%), Positives = 661/1109 (59%), Gaps = 63/1109 (5%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKA 64
T+ V P A+ + FLE G +V AL++ +S SR +VQF K
Sbjct: 4 TIQVYGFPDLLPAEVVKSFLEKHTGYGTVCALDV--KQSKGGSRAFAKVQFVDNISADKI 61
Query: 65 QNLSLNDKLVFNSQNLKISETHSDIVPRPVKAQHRVEDGVLHVGVMCKEERLRVLQTFEG 124
NL+ + +L F S LK E +DIV V ++ L+ G +++ VL + E
Sbjct: 62 INLA-SKRLYFGSSYLKAWEMKTDIVQ--VAYVDHMDGITLNFGCQISDDKFAVLGSTE- 117
Query: 125 VRGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFSLDEG 184
V +++ F++ S+D +K+++ +E++ + V G
Sbjct: 118 VSIKFGIGLKKIYFFL---------------SRGSAD--YKLQLSYENIWQVV-LHRPYG 159
Query: 185 ATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKSIGCS 244
+L +L P+IY+++ + Y KE D WVRTTDF+ + IG S
Sbjct: 160 QNAQFLLIQLFGAPRIYKRLE---------NSCYSFFKETPDDQWVRTTDFAPS-WIGLS 209
Query: 245 TSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTT--SEIVPLVKCRPGFNLSH 302
+S + + G+ + F Y E + ++ L+ G F + S +VP V+ G + +
Sbjct: 210 SSLCLQFRRGVHLPNFQESFFHYAERENNITLQTGFTFFISQKSALVPNVQPPEGIAIPY 269
Query: 303 EVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALM--VLQKLHKLKSICYDPVSFVK 360
++LF+++SLV + + + + +++ A + L+KL+ LK CYDPV ++
Sbjct: 270 KILFKISSLVQHGCIPGPSLNVYFFRLVDPQRRNVACIEQALEKLYYLKECCYDPVRWLT 329
Query: 361 TQL--HVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAK 418
Q ++ GR P S +D ++ R LVTP K+Y GPE+ SN V++N+++
Sbjct: 330 EQYDGYLKGRQ----PPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSE 385
Query: 419 YASDFMRVTFVEEDWSKLPANAL--STSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKH 476
+F+RV+FV+E+W KL + L S GI RT IY RIL+ +Q G VIGDK
Sbjct: 386 DIDNFLRVSFVDEEWEKLYSTELLPKASTGNGI-----RTNIYERILSTMQKGFVIGDKK 440
Query: 477 YEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQT 536
+EFLAFS+SQLR+NSVWMFAS ++A D+R WMG F++I++V+K AAR+GQ F SSK+T
Sbjct: 441 FEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSKET 500
Query: 537 LVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGY 596
L V ++E+IPDV+V G +Y FSDGIGKIS FAR+VA KCGL +TPSAFQIRYGGY
Sbjct: 501 LSVLRHEIEVIPDVKV--HGTSYVFSDGIGKISADFARRVASKCGLQYTPSAFQIRYGGY 558
Query: 597 KGVIAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEV 656
KGV+AVD S KLSLR+SM K+ES N L+V WS+ PC+LNR++I+LLSTLGVKD++
Sbjct: 559 KGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLITLLSTLGVKDDI 618
Query: 657 FEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLS 716
E Q++ + L +L + A + L+ ++ ++ NIL ML GY P+ EP+LSMML +
Sbjct: 619 LEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQT 678
Query: 717 HHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFH-- 774
++L DL+++ RI++P GR ++GC DE+ L YGQVFV+ T S+D F+
Sbjct: 679 FRASKLLDLRTKSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNS 738
Query: 775 RVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNEC 834
R + I+KG V+V KNPCLHPGD+RVL AV L VDC++FPQKG+RPHPNEC
Sbjct: 739 RSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHH--MVDCVVFPQKGKRPHPNEC 796
Query: 835 SGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLG 894
SG DLDGDI+F+ WD D+IP PM+Y S +DHDVT+EE+ ++F +Y++ND+LG
Sbjct: 797 SGSDLDGDIYFVCWDQDMIPPRQVQPMEYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSLG 856
Query: 895 AISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMER- 953
IS AH+V ADR+PD A S C LA L S+AVDF KTG PAE+P +PKE+PDFM++
Sbjct: 857 IISNAHVVFADREPDMAMSDPCKKLAELCSIAVDFPKTGVPAEIPSQWRPKEYPDFMDKP 916
Query: 954 EDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESH 1013
DK YIS V+GKLYR D Q S AI++ +A SYD DLEVDGFE ++ A +
Sbjct: 917 PDKTTYISERVIGKLYRKVKDKAPQASSTAIFTRDVARRSYDADLEVDGFEDYIDEAFDY 976
Query: 1014 KEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEA 1073
K Y+ ++ LM+YYG TE EIL+G + + R + I ++ + L+ EA
Sbjct: 977 KTEYDNKLGNLMDYYGIKTEAEILSGGIMKTSKTFDRRKD-----AEAISIAVRALRKEA 1031
Query: 1074 KEWFGSSCKENEHPQLASAWYHVTYSPSY 1102
+ WF ++ ASAWYHVTY P+Y
Sbjct: 1032 RTWFKRRNDIDDMLPKASAWYHVTYHPTY 1060
>gi|356499585|ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Glycine max]
Length = 1125
Score = 789 bits (2037), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/1147 (39%), Positives = 673/1147 (58%), Gaps = 73/1147 (6%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLD----F 60
T+ + P + D+ F+E G+ +VFA+++ + R +QFT+ +
Sbjct: 4 TIELYGFPTSVNVSDVKTFVEQYTGEGTVFAIKLRHGKGR-VPRAFAIIQFTTANSATSM 62
Query: 61 KSKAQNLSLNDKLVFNSQNLKISETHSDIVPRPVKAQHRVEDGVLHVGVMCKEERLRVLQ 120
S+A N+ L + + LK E DIVPRP H ++D L G + R VL
Sbjct: 63 MSRANNILRT--LRYGTSYLKAREMERDIVPRPRVFLHSLDDVKLSFGCQISKGRFSVLW 120
Query: 121 TFEGVRGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFS 180
+ V R++ F HN + +K+E+ +E++ + +
Sbjct: 121 KKQDVIVNFGSGMRKMHFLF--SHN---------------NVQYKLELSYENIWK-IELH 162
Query: 181 LDEGATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKS 240
T +L +L P++++ P + F ++ K+ D W+R DF+
Sbjct: 163 RPRNETTRYLLIQLLGAPRVFEN-DVPTSTNIFDDPLFNFFKDAPDEQWIRAIDFTPESR 221
Query: 241 IGCSTSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTTSEIVPLVKCRPGFNL 300
IG S++ E+ NG + F +Y+E + L+ G F +VP+V G +
Sbjct: 222 IGQSSAICLELPNGRQLPNFRENFAYYEESERQYTLQTGVPFSQNWGLVPIVAPPLGVKI 281
Query: 301 SHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALM--VLQKLHKLKSICYDPVSF 358
S+++LF++NSLV + ++ A D + +++ M + L+K++ K CY+P +
Sbjct: 282 SYDILFKVNSLVQHACLAGPALDGDFYRLVDPRRMPREFIEYALEKIYYSKEFCYEPTKW 341
Query: 359 VKTQL--HVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNF 416
+ Q ++ +N P S +D ++ R +TP K+Y GPE+ SN V+++F
Sbjct: 342 LTDQYKTYLESKNHPRSPAIS----LDTGLVYVRRVQITPCKVYFCGPEMNVSNRVLRHF 397
Query: 417 AKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKH 476
++ +F+RV+FV+E+ KL + LS+ Q +T+IY+RIL+IL++GIV+GDK
Sbjct: 398 REHIDNFLRVSFVDEELDKLFSTDLSSRSQNK------KTEIYTRILSILKNGIVVGDKK 451
Query: 477 YEFLAFSASQLRNNSVWMFASNDE-VSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQ 535
+EFLAFS+SQLR NS+WMFA + +A +R WMG F++IR+V+K AAR+GQ F SS +
Sbjct: 452 FEFLAFSSSQLRENSLWMFAPTETGCTAAYIRKWMGNFSQIRNVAKYAARLGQSFGSSTE 511
Query: 536 TLVVPVQDVEMIPDVE-VTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYG 594
TL V +VE+IPDV+ +T DGN Y FSDGIGKISL FA++VA+KCG TPSAFQIRYG
Sbjct: 512 TLSVHRDEVEIIPDVKKLTYDGNEYVFSDGIGKISLEFAQKVAKKCGYDCTPSAFQIRYG 571
Query: 595 GYKGVIAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKD 654
GYKGV+AVD S KLSLR+SM K++S N L+V S+ PC+LNR++ISLLSTLG+KD
Sbjct: 572 GYKGVVAVDPKSCYKLSLRKSMRKYDSDNTKLDVLARSKFQPCYLNRQLISLLSTLGIKD 631
Query: 655 EVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMML 714
+VFE Q++ + L +L + A +VL ++ + N+L +ML+ GY+PN EP+LSMML
Sbjct: 632 DVFEKKQRETVNQLNTILTDSLKAQEVLDLMSAGEITNVLKEMLICGYKPNEEPFLSMML 691
Query: 715 LSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFH 774
+ ++L +L+ + RI++PKGR ++GC DET L YGQVFV+ + R L++ FF
Sbjct: 692 QTFRASKLLELRLKSRIFIPKGRAMMGCLDETRTLEYGQVFVQFSNNR--LQNLSDDFFS 749
Query: 775 RVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAV-----YEMKLEEKDYVDCIIFPQKGERP 829
K +VKGKV+V KNPCLHPGDVRVL+AV Y M VDC++FPQKG RP
Sbjct: 750 YDLPKNYMVKGKVVVAKNPCLHPGDVRVLQAVDVPDLYHM-------VDCVVFPQKGPRP 802
Query: 830 HPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMI 889
HPNECSG DLDGDI+F+ WD++LIP PMDYT + +DHDV +EE+ ++F +Y++
Sbjct: 803 HPNECSGSDLDGDIYFVCWDHELIPSRPIDPMDYTAPATVELDHDVMIEEVEEYFANYIV 862
Query: 890 NDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPD 949
ND+LG I+ AH V AD++ KA S +C+ LA L S AVDF KTG PA +P L KE+PD
Sbjct: 863 NDSLGIIANAHTVFADKEHLKAMSDQCVKLARLFSTAVDFPKTGVPAVIPPELHVKEYPD 922
Query: 950 FMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGV 1009
FME+ DKP Y S V+GKL+R + S +++ +A SYDH++EVDGF ++
Sbjct: 923 FMEKPDKPTYKSHNVIGKLFREVKEISTSAGSITSFTKLVARDSYDHEMEVDGFMDYVDD 982
Query: 1010 AESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNL 1069
A HK Y+ ++ LM+YYG TE EIL GN+ + + RR + I ++ ++L
Sbjct: 983 AFYHKTNYDYKLGNLMDYYGIKTEAEILGGNIMKMSKSFNK--RRDAEA---INMAVRSL 1037
Query: 1070 QNEAKEWFGSSCKENEHPQL------ASAWYHVTYSPSY--C----KERMALLSFPWIVG 1117
+ EA+ WF + + ASAWYHVTY PSY C R LSF W V
Sbjct: 1038 RKEARAWFNENSSGDVDSGSSDVYAKASAWYHVTYHPSYWGCYNEGMNRDHYLSFSWCVY 1097
Query: 1118 DILLNIK 1124
+L+ IK
Sbjct: 1098 PLLVQIK 1104
>gi|297805194|ref|XP_002870481.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
gi|297316317|gb|EFH46740.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
Length = 1097
Score = 788 bits (2036), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/1139 (40%), Positives = 673/1139 (59%), Gaps = 79/1139 (6%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKA 64
T+ V P A+++ FLE G +V+A+++ + R VQFT+ + +
Sbjct: 4 TIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKG-GPRVFAIVQFTNERYARQI 62
Query: 65 QNLSLNDKLVFNSQNLKISETHSDIVPRPVKAQHRVEDGVLHVGVMCKEERLRVLQTFEG 124
+ L + L E DIVP+P + H + ++ G ++ L + +
Sbjct: 63 ITGAAERSLYYGRSYLNAFEVEQDIVPKPRASLHNISGLKMYFGCQVSTQKFLTLWSAQD 122
Query: 125 VRGWLLPDRRRLEF-WVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFSLDE 183
V R+L F + W +QK +++E+ +E++ + + +
Sbjct: 123 VCVSFGIGMRKLHFSFSW------YQKD------------YRLELSYENIWQ-IDLHSPQ 163
Query: 184 GATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKSIGC 243
G + ++ + K + ++ F SD D W+RTTDF+ + IG
Sbjct: 164 GRSSKFLVIQKK------KPINLLFGMMDFYSD-------GSDEQWIRTTDFTSSSCIGQ 210
Query: 244 STSFFWEIKNGLLASDISNIFPFYKEDK-TDLILEEGEEFCTTS-EIVPLVKCRPGFNLS 301
ST+F E+ L D F Y E + + ++E G + + + ++VP+V PGF+L
Sbjct: 211 STAFCLELPVHLNVPDFRENFANYAEHRASPFLIESGSSYSSNANKLVPVVDPPPGFDLP 270
Query: 302 HEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALM--VLQKLHKLKSICYDPVSFV 359
E+LF+LN+LV N + A D ++ Q+L+ ++ AL+ L+KL L CY+P ++
Sbjct: 271 FEILFKLNTLVQNACLPGPALDLDVYQLLNPKKIDRALIDHCLEKLFYLGESCYEPARWL 330
Query: 360 KTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKY 419
+ Q L K +PLS L D ++ YR VTP ++Y GPE+ SN V+++++KY
Sbjct: 331 RKQYKELSSKGK-LPLSPTISL-DDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKY 388
Query: 420 ASDFMRVTFVEEDWSKLPANALS--TSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHY 477
++F+RV+FV+ED K+ + LS +S QR RTK+Y RI ++L+DGIVIGDK +
Sbjct: 389 INNFLRVSFVDEDLEKVRSMDLSPRSSTQR-------RTKLYDRIYSVLRDGIVIGDKKF 441
Query: 478 EFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTL 537
EFLAFS+SQLR NS WMFA D +++ +R WMG F+ IR+V+K AAR+GQ FSSS++TL
Sbjct: 442 EFLAFSSSQLRENSAWMFAPIDGLTSAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETL 501
Query: 538 VVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSH-TPSAFQIRYGGY 596
V ++E+IPDVE+ S G Y FSDGIGKIS FAR+VA+KCGL+ +PSAFQIRYGGY
Sbjct: 502 NVRSDEIEVIPDVEIISLGTRYVFSDGIGKISAEFARRVAKKCGLTEFSPSAFQIRYGGY 561
Query: 597 KGVIAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEV 656
KGV+AVD NS +KLSLR+SM KFES N L+V WS+ PC++NR++I+LLSTLG+KD V
Sbjct: 562 KGVVAVDPNSSKKLSLRKSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGIKDSV 621
Query: 657 FEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLS 716
FE Q++ + L +L + A + L + ++ NIL ++L GY+P+ EP+LSMML +
Sbjct: 622 FEKKQREVVDRLDAILTDPLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQN 681
Query: 717 HHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRV 776
++L +L+++ RI++ GR ++GC DET L YGQV V+ +
Sbjct: 682 FRASKLLELRTKTRIFISGGRSMMGCLDETRTLEYGQVVVQYSDPMRP------------ 729
Query: 777 DDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSG 836
+ I+ G V+V KNPCLHPGDVRVLEAV L VDC++FPQKG RPHPNECSG
Sbjct: 730 -GRRFIITGPVVVAKNPCLHPGDVRVLEAVNVPALNH--MVDCVVFPQKGLRPHPNECSG 786
Query: 837 GDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAI 896
DLDGDI+F+ WD +LIP T PMDYT ++I+DHDVT+EE+ ++F +Y++ND+LG I
Sbjct: 787 SDLDGDIYFVCWDQELIPPRTSEPMDYTPEPAQILDHDVTIEEVEEYFANYIVNDSLGII 846
Query: 897 STAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDK 956
+ AH AD++P KA S C+ LA S+AVDF KTG AE+P L KE+PDFME+ DK
Sbjct: 847 ANAHTAFADKEPLKAFSDPCIELARKFSVAVDFPKTGVAAEIPQHLHVKEYPDFMEKPDK 906
Query: 957 PRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEM 1016
P Y S V+GKL+R + + S ++ +A SYD D+EVDGFE ++ A +K
Sbjct: 907 PTYESKNVIGKLFREVKERAPPLISIKSFTLDVALKSYDKDMEVDGFEEYVDEAFHYKAN 966
Query: 1017 YEEEMNALMNYYGASTEDEILTGN-LRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKE 1075
Y+ ++ LM+YYG TE EIL+G +R S+ +R + + I + + L+ E
Sbjct: 967 YDFKLGNLMDYYGIKTEAEILSGGIMRMSKSFTKRRD------AESIGRAVRALRKETLS 1020
Query: 1076 WFGSSCKENEHPQLASAWYHVTYSPSYCK------ERMALLSFPWIVGDILLNIKSVNS 1128
F ++ +ENE + ASAWYHVTY SY R LSF W V D L+ IK N+
Sbjct: 1021 LFNATEEENESAK-ASAWYHVTYHSSYWGLYNEGLNRDHFLSFAWCVYDKLVRIKKTNA 1078
>gi|225424395|ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
Length = 1109
Score = 787 bits (2033), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/1138 (40%), Positives = 664/1138 (58%), Gaps = 65/1138 (5%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKA 64
T+ V +P A ++ FLE G+ ++ ALEI +S S +VQFTSL
Sbjct: 4 TIQVYGVPSNVSANEIKEFLEKYTGEGTIEALEIKQPKSG-VSMTHAKVQFTSLRLAELI 62
Query: 65 QNLSLNDKLVFNSQNLKISETHSDIVPRPVKAQHRVEDGVLHVGVMCKEERLRVLQTFEG 124
+SL +L + LK E DI+P+P H ++ LH G ER VL
Sbjct: 63 --ISLAKQLWYGGNYLKAREMDLDIIPKPRTFLHSMDRITLHFGYQMSNERFCVLWKAIN 120
Query: 125 VRGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFSLDEG 184
V R+ F++ G +E +K+E+ E++ + + G
Sbjct: 121 VSVKFGFGLRKFYFFL--------SHGSEE---------YKLELSCENIWQ-IQLREPRG 162
Query: 185 ATVNGILFKLKYGPKIYQK-VSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKSIGC 243
+L +L P+IY+K VS + P D+ WVR DF+ + SIG
Sbjct: 163 QNTKFLLIQLLDAPQIYEKDVSALSYFKETPDDQ-----------WVREIDFTPSCSIGQ 211
Query: 244 STSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTTSEIVPLVKCRPGFNLSHE 303
S++ E+ +G + F YKE+ ILE G F +VP+V G NL +
Sbjct: 212 SSALCLELPHGSQLPNFCENFARYKENDRKFILESGASFSGNLHLVPIVGPPQGSNLPFK 271
Query: 304 VLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALM--VLQKLHKLKSICYDPVSFVKT 361
+LF++N+LV N +S D + + + + + L+KL+ L+ CY+PV ++
Sbjct: 272 ILFKINTLVQNGCLSGPTLDTNFFRWVDPQRINISFIEHALEKLYYLEECCYEPVRWLHE 331
Query: 362 QLHV-LGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYA 420
Q + + P S +D ++ R +TP K+Y GPE+ SN V++N+ +
Sbjct: 332 QYRTYISKQVAGSPAIS----LDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDI 387
Query: 421 SDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFL 480
+F+RV+F++E+ K+ + +S + ++ RT +Y RIL+ILQ+GIVIGDK ++FL
Sbjct: 388 DNFLRVSFLDENSEKIHSTVISPRMS----NEGRRTGVYRRILSILQNGIVIGDKKFDFL 443
Query: 481 AFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVP 540
A S+SQLR+NS WMFAS ++A D+R MG F++IR+V+K AAR+GQ FSSSK+TL V
Sbjct: 444 AVSSSQLRDNSAWMFASRPGLTAADIRSRMGDFSQIRNVAKYAARLGQSFSSSKETLKVA 503
Query: 541 VQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSH-TPSAFQIRYGGYKGV 599
++E+IPD+E DG TY FSDGIGKIS A +VA KCG + TPSAFQIRYGGYKGV
Sbjct: 504 KHEIEIIPDIETHRDGTTYVFSDGIGKISAELAHRVAIKCGCKNSTPSAFQIRYGGYKGV 563
Query: 600 IAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEA 659
+AVD S RKLSLR+SM K+ES N L+V WS+ PCFLNR++I+LLSTLGVKD VFE
Sbjct: 564 VAVDPTSSRKLSLRKSMFKYESENTNLDVLSWSKYRPCFLNRQLITLLSTLGVKDHVFEK 623
Query: 660 MQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHE 719
Q++ + L +L + A + L+ ++ ++ NIL +ML+ GY+P+ EP+LSMML +
Sbjct: 624 KQREAVDQLDTILKDPLRAQEALELMSPGENTNILKEMLMCGYKPDAEPFLSMMLQTFRA 683
Query: 720 NQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDK 779
+L +L+++ RI+VP GR ++GC DET L YG+VFV+++ T D F+
Sbjct: 684 AKLLELRTKTRIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFYGSGSH 743
Query: 780 TS--IVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGG 837
I++GKV+V KNPCLHPGDVR+L AV L VDC++FPQKG RPHP+ECSG
Sbjct: 744 HDNFILEGKVVVAKNPCLHPGDVRILSAVDVPALHH--MVDCVVFPQKGMRPHPDECSGS 801
Query: 838 DLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAIS 897
DLDGDI+F+ WD+DLIP PMDYT ++++DHDV +EE+ ++F +Y+ ND LG I+
Sbjct: 802 DLDGDIYFVCWDHDLIPPRQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIGNDKLGIIA 861
Query: 898 TAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKP 957
AH V AD++ DKA C LA L S+A++F KTG PAE+P L KE+PDFME+ +KP
Sbjct: 862 NAHTVFADKEYDKALCPPCKELAKLFSIALEFPKTGVPAEIPFHLHVKEYPDFMEKANKP 921
Query: 958 RYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMY 1017
Y S V+GKL+R D ++ +A SYD D+EVDGFE ++ A +K Y
Sbjct: 922 TYESQSVIGKLFREVKDVAPHNYDVRSFTRDVAMQSYDADMEVDGFEDYVRDAFYYKSQY 981
Query: 1018 EEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWF 1077
+ ++ +LM+ G TE EIL+G++ + D R+ + I L+ ++L+ EA+ WF
Sbjct: 982 DFKLGSLMDCCGIRTESEILSGSIMKMSKSF--DKRKDAEA---IALAVRSLRKEARTWF 1036
Query: 1078 -----GSSCKENEHPQLASAWYHVTYSPSY--C-KERM---ALLSFPWIVGDILLNIK 1124
G+ ++ +ASAWYHVTY P Y C E M LSFPW V D L+ IK
Sbjct: 1037 NKMGSGTYAGADDVYAIASAWYHVTYHPYYWGCYNEGMYHDHFLSFPWCVYDKLIQIK 1094
>gi|242066062|ref|XP_002454320.1| hypothetical protein SORBIDRAFT_04g028630 [Sorghum bicolor]
gi|241934151|gb|EES07296.1| hypothetical protein SORBIDRAFT_04g028630 [Sorghum bicolor]
Length = 1114
Score = 786 bits (2030), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/1140 (40%), Positives = 669/1140 (58%), Gaps = 64/1140 (5%)
Query: 1 MVLATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRS-NWKSRGIGRVQFTSLD 59
MV T+ V T A+ + FLE G +++AL++ R+ + SR VQF S +
Sbjct: 1 MVGRTIQVHGFALTDSAESVKEFLERISGAGTIYALKLRHPRNISANSRAFAIVQFQSQE 60
Query: 60 FKSKAQNLSLNDKLVFNSQNLKISETHSDIVPRPVKAQHRVEDGVLHVGVMCKEERLRVL 119
S +++ + LK DIVPRP +ED VLH+G + KE L L
Sbjct: 61 SASLVEDVVQRNAPRIGRFYLKTRPADRDIVPRPRIPMFSLEDTVLHLGCLVKENILSAL 120
Query: 120 QTFEGVRGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLET-VG 178
T V D +++ F++ + +K+E+ +E + E +
Sbjct: 121 FTASNVSVQFGFDMKKIYFYL-----------------SYNFIKYKLELSYESIWEIQLH 163
Query: 179 FSLDEGATVNGILFKLKYGPKIYQKVSG-PHVASKFPSDRYHICKEDFDFFWVRTTDFSV 237
+ +L +++ PKIY+ + P + + P + + +D D W RT DF+
Sbjct: 164 RPPAYRSRTKFLLIQVQAAPKIYELLPRRPGLMYEDPFFNWFM--DDTDEQWTRTIDFTP 221
Query: 238 TKSIGCSTSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTTSEIVPLVKCRPG 297
+ SIG S+ F E+ I + F +YKE D G + + +VP+VK
Sbjct: 222 SVSIGQSSIFCLEVPQQCELPRIGDYFVYYKERNLDFECRNGYSYSCGNCLVPIVKSPDY 281
Query: 298 FNLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGL--SMETALMVLQKLHKLKSICYDP 355
+ +E+LF++N LV N +S D +S ++ L K+ LKS C +P
Sbjct: 282 IEVPYEILFKINHLVQNGTLSGPTVDHSFFCHVSPEFEPIDHIKRALLKMSYLKSTCLNP 341
Query: 356 VSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKN 415
+++ Q + R+ + SS+ L D ++ +R VTP K+Y GPE+ SN VV+N
Sbjct: 342 TNWLSVQYSRIRRSRHASQRSSNISL-DDGLVYVHRVQVTPAKVYFYGPEINVSNRVVRN 400
Query: 416 FAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDK 475
F+ +F+R++FV+ED KL + LS G ++ RT +Y+R+L++L +GI IGDK
Sbjct: 401 FSADIDNFLRISFVDEDCEKLRSLDLSPRSTSGNDAR--RTALYNRVLSVLSNGINIGDK 458
Query: 476 HYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQ 535
H+EFLAFS+SQLR+NS WMFAS ++A D+R WMG F IR+V+K AAR+GQ FSSS +
Sbjct: 459 HFEFLAFSSSQLRDNSAWMFASRQGLTASDIRKWMGDFRDIRNVAKYAARLGQSFSSSTE 518
Query: 536 TLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSH-TPSAFQIRYG 594
TL+V +VE IPD++ +G Y FSDG+GKIS +FA++VA KC L PS FQIRYG
Sbjct: 519 TLIVRKHEVEQIPDIK---NGTNYIFSDGVGKISANFAKEVAMKCKLRRFAPSVFQIRYG 575
Query: 595 GYKGVIAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKD 654
GYKGV+AVD S RKLSLRRSMLKF+S N L+V +S+ PCFLNR++I+LLSTLGV D
Sbjct: 576 GYKGVVAVDPRSNRKLSLRRSMLKFQSENITLDVLAYSKYQPCFLNRQLITLLSTLGVGD 635
Query: 655 EVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMML 714
VFE Q++ + L +M+ +AA + ++ + + N++ ++L GY+P+ EPYLSM+L
Sbjct: 636 NVFELKQKEAIKQLNRMVTEPQAAREAVELMPMGEVTNVVKELLSCGYQPDHEPYLSMLL 695
Query: 715 LSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFH 774
+ ++L +LK++ RI++ +GR ++GC DET L YGQVF++ + ++ H
Sbjct: 696 QTFRASKLLELKTKSRIFITQGRAMMGCLDETRTLKYGQVFIQASYCADD--------HH 747
Query: 775 RVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNEC 834
++ +V GKV+V KNPCLHPGD+RVL+AV L DC++FPQ+G RPHPNEC
Sbjct: 748 KI-----VVTGKVVVAKNPCLHPGDIRVLQAVDVPSLHHM--FDCVVFPQQGPRPHPNEC 800
Query: 835 SGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLG 894
SG DLDGDI+F+SWD DLIP E PMDYT + +DHDVT+EEI ++F +Y++N++LG
Sbjct: 801 SGSDLDGDIYFVSWDPDLIPSHMEDPMDYTPAPAETLDHDVTIEEIQEYFTNYIVNESLG 860
Query: 895 AISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMERE 954
I+ AH+V+AD++ KA+S CL LA L S+AVDF KTG PA +P L KE+PDFME+
Sbjct: 861 IIANAHVVYADKEDLKAKSRPCLELAKLFSIAVDFPKTGVPALIPPELHVKEYPDFMEKL 920
Query: 955 DKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHK 1014
DK Y S GV+GKLYR IR ++ ++A+ SYD DL VDG+E ++ A K
Sbjct: 921 DKATYESKGVIGKLYREIKKHTPHIRH---FTREVAKRSYDTDLIVDGYEDYITEAIEFK 977
Query: 1015 EMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAK 1074
E Y+ + LM++YG +E EI++G A + + D I ++ ++L+ EA+
Sbjct: 978 EEYDFRLGNLMDHYGIKSEAEIISGCFLKMAKNFTKSSD-----ADAIRMAVRSLRKEAR 1032
Query: 1075 EWFGS-SCKENEHPQL---ASAWYHVTYSPSYCK------ERMALLSFPWIVGDILLNIK 1124
WF S E++ ASAWYHVTY P Y +R L+SFPW V D L+ IK
Sbjct: 1033 SWFNEMSTSEDDQDATEAKASAWYHVTYDPQYWGNYNEGYDRPHLISFPWCVYDKLVIIK 1092
>gi|90823307|gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 785 bits (2027), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/1137 (40%), Positives = 663/1137 (58%), Gaps = 73/1137 (6%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKS-RGIGRVQFTSLDFKSK 63
T+ V A ++ FLE G+ +V+AL+I R + KS R VQFT
Sbjct: 4 TIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKI---RQHKKSGRAFAIVQFTRSSDAGL 60
Query: 64 AQNLSLNDKLVFNSQNLKISETHSDIVPRPVKAQHRVEDGVLHVGVMCKEERLRVLQTFE 123
L+ N +L + LK E +DIVP+P H +E ++ EE+ VL +
Sbjct: 61 IIRLA-NQRLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFDCHVSEEKFYVLWKAD 119
Query: 124 GVRGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFSLDE 183
V R+LEF + C S +K+E+ +E++ + +
Sbjct: 120 NVTLNFGTGMRKLEFL------------LSYCSSK-----YKLELFYENIWQ-IELRCPH 161
Query: 184 GATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKSIGC 243
T +L +L P+IY+K P F + K+ D WVRTTDF+ + IG
Sbjct: 162 SQTSKHLLIQLFGAPRIYEK-EVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQ 220
Query: 244 STSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTTSEIVPLVKCRPGFNLSHE 303
S+ E+ + L + F +YKE++ L+LE G + +VP+V +L E
Sbjct: 221 SSVLCLELPHNLQLPNFRENFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFE 280
Query: 304 VLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALM--VLQKLHKLKSICYDPVSFVKT 361
+LF++N LV N + A D +++ M + L+KL+ L+ CY+P ++
Sbjct: 281 ILFKVNLLVQNGCIPGPALDDTFYRLVDPCRMHKVYIDHALEKLYYLRECCYEPSRWLFE 340
Query: 362 QLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYAS 421
+ R+ K S +D ++ R +TP ++Y GPE+ SN V++ F
Sbjct: 341 EYKNFSRSRKY--QGSPTISLDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDID 398
Query: 422 DFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLA 481
+F+R++FV+E+ K+ ST++Q ++ RT IY RIL+ L++GIVIG+K +EFLA
Sbjct: 399 NFLRISFVDEELEKIH----STNVQ----ARGRRTGIYKRILSTLRNGIVIGNKRFEFLA 450
Query: 482 FSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPV 541
FS+SQLR NS WMFAS ++A D+R WMG F+KIR+V+K AAR+GQ FSSS +TL V
Sbjct: 451 FSSSQLRENSAWMFASRKGLTAADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSK 510
Query: 542 QDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSH-TPSAFQIRYGGYKGVI 600
++ +IPD+E+ DG Y F DGIGKIS FA++VA KC L TPSAFQIR GG+KGV+
Sbjct: 511 DEINLIPDIEIMKDGIKYVFPDGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVV 570
Query: 601 AVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAM 660
A+D S KLSLR+SM K+ES N L+V WS+ PCFLNR++I+LLSTLGV D FE
Sbjct: 571 AIDPTSSWKLSLRKSMEKYESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDYAFEKK 630
Query: 661 QQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHEN 720
Q++ + L +L + A + L+ ++ ++ NIL +MLL GY+P+ EP+LSMML + +
Sbjct: 631 QREVVDQLNALLTDPLEAQEALELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRAS 690
Query: 721 QLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKT 780
+L +L+++ RI+V KGR ++GC DET LNYGQVFV+ + +R E +
Sbjct: 691 KLLELRTKARIFVQKGRSMMGCLDETRTLNYGQVFVQFSGSRSE--------------RR 736
Query: 781 SIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLD 840
IV+GKV+V KNPCLHPGDVRVL AV L VDC++FPQKG RPHPNECSG DLD
Sbjct: 737 FIVQGKVIVAKNPCLHPGDVRVLRAVNVPDLHH--MVDCVVFPQKGTRPHPNECSGSDLD 794
Query: 841 GDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAH 900
GD++F+ WD +LIP + PMDY+ + +DH+VT+EEI ++F +Y++ND+LG IS AH
Sbjct: 795 GDVYFVCWDPELIPYKQIDPMDYSPASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAH 854
Query: 901 LVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYI 960
ADR+P KA S CL LA L S+AVDF KTG PAE+P L+ KEFPDFME+ DKP Y
Sbjct: 855 TAFADREPGKAMSRPCLELAKLFSIAVDFPKTGVPAEIPQELRVKEFPDFMEKPDKPSYQ 914
Query: 961 SFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEE 1020
S+ V+GKL+R + S + + + + YD D+EV+GF ++ A +K Y+ +
Sbjct: 915 SYNVIGKLFREVKNLAPNECSIKLLTREKMKRFYDPDMEVEGFVDYIDDAFFYKSKYDYK 974
Query: 1021 MNALMNYYGASTEDEILTGNL--RNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWF- 1077
+ LM+YYG TE EIL+G + +R+ +RD + I ++ ++L+ EA+ WF
Sbjct: 975 LGNLMDYYGVKTEAEILSGGIMKMSRSFTKKRD-------AESISMAVRSLRKEARSWFN 1027
Query: 1078 --GSSCKE--NEHPQLASAWYHVTYSPSYCKE------RMALLSFPWIVGDILLNIK 1124
GS E ++ ASAWY+VTY SY + R LSFPW V D L+ IK
Sbjct: 1028 EKGSELDEEIDDAYAKASAWYYVTYHHSYWGQYNEGMNRDHFLSFPWCVYDKLIQIK 1084
>gi|197223664|gb|ACH53360.1| RNA-directed RNA polymerase 1a [Hordeum vulgare]
Length = 1114
Score = 785 bits (2026), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 452/1147 (39%), Positives = 670/1147 (58%), Gaps = 78/1147 (6%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRS-NWKSRGIGRVQFTSLDFKSK 63
T+ VS P T + LE +G V A+++ ++ + SR VQF + S
Sbjct: 5 TLQVSGFPATVNVHHVKDLLEQIVGLGKVCAVKLRPPKNISANSRSFAIVQFETEAHASL 64
Query: 64 AQNLSLNDKLVFNSQNLKISETHSDIVPRPVKAQHRVEDGVLHVGVMCKEERLRVLQTFE 123
N + + L S LK+ DI+ +P A +ED LH G + +E L VL +
Sbjct: 65 VVNAARGNALRSGSNYLKVRPAERDIILKPRTALFNLEDATLHFGCLLRERVLSVLWSGT 124
Query: 124 GVRGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFSLDE 183
GV +EF G K I C + + +K+E+ +E + E +
Sbjct: 125 GVS---------VEF-------GFAMKKIDFCLTYNLKK-YKLELSYESIWE-IQLYHPP 166
Query: 184 GATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKSIGC 243
G+ +L ++ PKIY++ + H S + ++ ++D D W RTTDF+ SIG
Sbjct: 167 GSQKKFLLIQVMAAPKIYEQ-NLWHSGSMYDDPLFNYFRDDTDDQWTRTTDFTPLASIGQ 225
Query: 244 STSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTTSEIVPLVKCRPGFNLSHE 303
S E+ +I F +YK D G + + S VP+VK + ++ +E
Sbjct: 226 SYILCLELPADCYLPNIREYFAYYKNHNHDFHCMRGHSYSSNSCFVPIVKSQYFTDVPYE 285
Query: 304 VLFQLNSLVHNQKVSLVAADAELIQILSG--LSMETALMVLQKLHKLKSICYDPVSFVKT 361
+LF++N+LV N +S D +++S + ++ L+ + LK C +P+++
Sbjct: 286 ILFKINNLVQNGILSGPTLDDNFYRLVSPGYVCIDHIKHALENMSYLKKTCLNPINW--- 342
Query: 362 QLHVLGRNCKSIPLSSHK------RLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKN 415
L K I +S H L D + YR +TP K+Y GPE+ SN VV+N
Sbjct: 343 ----LSEKYKEIQISRHMLTSPNIALDDDGLAYVYRVQITPAKVYFYGPEINVSNRVVRN 398
Query: 416 FAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDK 475
++ +F+R++FV+ED KL + LS G + RT +Y+RIL++L +GI IG+K
Sbjct: 399 YSADLENFLRISFVDEDCEKLRSTDLSPRYAPG--NNASRTALYNRILSVLSNGITIGNK 456
Query: 476 HYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQ 535
H+EFLAFS+SQLR+NS WMFAS +SA D+R WMG F IR+V+K AAR+GQ FS+S +
Sbjct: 457 HFEFLAFSSSQLRDNSAWMFASRTGLSASDIREWMGNFRNIRNVAKYAARLGQSFSASTE 516
Query: 536 TLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSH-TPSAFQIRYG 594
TL V +V+ +P+V ++G Y FSDGIG IS FA +V++KC L+ TPSAFQIRYG
Sbjct: 517 TLKVHKYEVQALPEV---TNGTKYVFSDGIGTISADFADEVSRKCKLARFTPSAFQIRYG 573
Query: 595 GYKGVIAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKD 654
GYKGV+A+D S KLSLR SM KF S N L+V +S+ PCFLNR++I+LLSTLGV+D
Sbjct: 574 GYKGVVAIDPRSHWKLSLRSSMSKFPSENITLDVLAYSKYQPCFLNRQLITLLSTLGVRD 633
Query: 655 EVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMML 714
+FE QQ ++ L +++ +AA+D ++ + + N++ ++LL GY+P+VEPYLSM+L
Sbjct: 634 NIFELKQQAAVMQLNRLVTEPQAAIDAIELMPMGEITNVVKELLLCGYQPDVEPYLSMIL 693
Query: 715 LSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFH 774
+ ++L +LK++ RI++P+GR ++GC DET L YG+VF++ + + E
Sbjct: 694 QTFRASKLLELKTKSRIFIPEGRAMMGCLDETRTLKYGEVFIQASNSANE---------- 743
Query: 775 RVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNEC 834
DK +V GKV+V KNPCLHPGD+R+L+AVY L+ V+C++FPQ+G RPHPNEC
Sbjct: 744 --SDKF-VVTGKVVVAKNPCLHPGDIRILKAVYTPVLDHM--VNCVVFPQQGPRPHPNEC 798
Query: 835 SGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLG 894
SG DLDGDI+F+SWD DLIP PMDYT + +DHDV +EE+H++F +Y++N++LG
Sbjct: 799 SGSDLDGDIYFVSWDPDLIPTRMVAPMDYTPAPTETLDHDVVIEEVHEYFANYIVNESLG 858
Query: 895 AISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMERE 954
I+ AH+V AD++ KA S++C+ LA L S+AVD+ KTG PA++P L +E+PDFME+
Sbjct: 859 IIANAHVVFADKESLKAESTQCIKLAELFSIAVDYPKTGVPAQIPSELHVREYPDFMEKL 918
Query: 955 DKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHK 1014
D+ YIS GV+GKLYR I +++ +A SYD DL VDG++ ++ A K
Sbjct: 919 DRATYISKGVIGKLYREIKKQSPHI---GHFTKDVARRSYDTDLIVDGYQDYITEAVWFK 975
Query: 1015 EMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAK 1074
Y+ ++ LM +YG +E EI++G + A + + D I L+ K+L+ EA+
Sbjct: 976 GEYDFKLGNLMEHYGIKSEAEIISGCILKMAKNFTKSSD-----ADAIRLAVKSLRKEAR 1030
Query: 1075 EWFGSSCKENEHPQL-------ASAWYHVTYSPSY------CKERMALLSFPWIVGDILL 1121
WF S +E + ASAWYHVTY P Y ER L+SFPW V D LL
Sbjct: 1031 SWF-SDMSADESGDVHEASYAKASAWYHVTYHPEYYGCYNKIYERPHLISFPWCVYDKLL 1089
Query: 1122 NIKSVNS 1128
+IK S
Sbjct: 1090 HIKQRKS 1096
>gi|40794967|gb|AAR91037.1| RNA-directed RNA polymerase 2 [Hordeum vulgare subsp. vulgare]
Length = 1115
Score = 784 bits (2025), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 453/1147 (39%), Positives = 669/1147 (58%), Gaps = 78/1147 (6%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRS-NWKSRGIGRVQFTSLDFKSK 63
T+ VS P T + LE +G V A+++ ++ + SR VQF + S
Sbjct: 5 TLQVSGFPATVNVHHVKDLLEQIVGLGKVCAVKLRPPKNISANSRSFAIVQFETEAHASL 64
Query: 64 AQNLSLNDKLVFNSQNLKISETHSDIVPRPVKAQHRVEDGVLHVGVMCKEERLRVLQTFE 123
N + + L S LK+ DI+ +P A +ED LH G + +E L VL +
Sbjct: 65 VVNAARGNALRSGSNYLKVRPAERDIILKPRTALFNLEDATLHFGCLLRERVLSVLWSGT 124
Query: 124 GVRGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFSLDE 183
GV +EF G K I C + + +K+E+ +E + E +
Sbjct: 125 GVS---------VEF-------GFAMKKIDFCLTYNLKK-YKLELSYESIWE-IQLYHPP 166
Query: 184 GATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKSIGC 243
G+ +L ++ PKIY++ + H S + ++ ++D D W RTTDF+ SIG
Sbjct: 167 GSQKKFLLIQVMAAPKIYEQ-NLWHSGSMYDDPLFNYFRDDTDDQWTRTTDFTPLASIGQ 225
Query: 244 STSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTTSEIVPLVKCRPGFNLSHE 303
S E+ +I F +YK D G + + S VP+VK + ++ +E
Sbjct: 226 SYILCLELPADCYLPNIREYFVYYKNHNHDFHCMRGHSYSSNSCFVPIVKSQYFTDVPYE 285
Query: 304 VLFQLNSLVHNQKVSLVAADAELIQILSG--LSMETALMVLQKLHKLKSICYDPVSFVKT 361
+LF++N+LV N +S D ++S + ++ L+ + LK C +P+++
Sbjct: 286 ILFKINNLVQNGILSGPTLDDNFYSLVSPGYVCIDHIKHALENMSYLKKTCLNPINW--- 342
Query: 362 QLHVLGRNCKSIPLSSHK------RLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKN 415
L K I +S H L D + YR +TP K+Y GPE+ SN VV+N
Sbjct: 343 ----LSEKYKEIQISRHMLTSPNIALDDDGLAYVYRVQITPAKVYFYGPEINVSNRVVRN 398
Query: 416 FAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDK 475
++ +F+R++FV+ED KL + LS G + RT +Y+RIL++L +GI IG+K
Sbjct: 399 YSADLENFLRISFVDEDCEKLRSTDLSPRSAPG--NNASRTALYNRILSVLSNGITIGNK 456
Query: 476 HYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQ 535
H+EFLAFS+SQLR+NS WMFAS +SA D+R WMG F IR+V+K AAR+GQ FS+S +
Sbjct: 457 HFEFLAFSSSQLRDNSAWMFASRTGLSASDIREWMGNFRNIRNVAKYAARLGQSFSASTE 516
Query: 536 TLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSH-TPSAFQIRYG 594
TL V +V+ +P+V ++G Y FSDGIG IS FA +V++KC L+ TPSAFQIRYG
Sbjct: 517 TLKVHKYEVQALPEV---TNGTKYVFSDGIGTISADFADEVSRKCKLARFTPSAFQIRYG 573
Query: 595 GYKGVIAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKD 654
GYKGV+A+D S KLSLR SM KF S N L+V +S+ PCFLNR++I+LLSTLGV+D
Sbjct: 574 GYKGVVAIDPRSHWKLSLRSSMSKFPSENITLDVLAYSKYQPCFLNRQLITLLSTLGVRD 633
Query: 655 EVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMML 714
+FE QQ ++ L +++ +AA+D ++ + + N++ ++LL GY+P+VEPYLSM+L
Sbjct: 634 NIFELKQQAAVMQLNRLVTEPQAAIDAIELMPMGEITNVVKELLLCGYQPDVEPYLSMIL 693
Query: 715 LSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFH 774
+ ++L +LK++ RI++P+GR ++GC DET L YG+VF++ + + E
Sbjct: 694 QTFRASKLLELKTKSRIFIPEGRAMMGCLDETRTLKYGEVFIQASNSANE---------- 743
Query: 775 RVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNEC 834
DK +V GKV+V KNPCLHPGD+R+LEAVY L+ V+C++FPQ+G RPHPNEC
Sbjct: 744 --SDKF-VVTGKVVVAKNPCLHPGDIRILEAVYTPVLDHM--VNCVVFPQQGPRPHPNEC 798
Query: 835 SGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLG 894
SG DLDGDI+F+SWD DLIP PMDYT + +DHDV +EE+H++F +Y++N++LG
Sbjct: 799 SGSDLDGDIYFVSWDPDLIPTRMVAPMDYTPAPTETLDHDVVIEEVHEYFANYIVNESLG 858
Query: 895 AISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMERE 954
I+ AH+V AD++ KA S++C+ LA L S+AVD+ KTG PA++P L +E+PDFME+
Sbjct: 859 IIANAHVVFADKESLKAESTQCIKLAELFSIAVDYPKTGVPAQIPSKLHVREYPDFMEKL 918
Query: 955 DKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHK 1014
D+ YIS GV+GKLYR I +++ +A SYD DL VDG++ ++ A K
Sbjct: 919 DRATYISKGVIGKLYREIKKQSPHI---GHFTKDVARRSYDTDLIVDGYQDYITEAVWFK 975
Query: 1015 EMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAK 1074
Y+ ++ LM +YG +E EI++G + A + + D I L+ K+L+ EA+
Sbjct: 976 GEYDFKLGNLMEHYGIKSEAEIISGCILKMAKNFTKSSD-----ADAIRLAVKSLRKEAR 1030
Query: 1075 EWFGSSCKENEHPQL-------ASAWYHVTYSPSY------CKERMALLSFPWIVGDILL 1121
WF S +E + ASAWYHVTY P Y ER L+SFPW V D LL
Sbjct: 1031 SWF-SDMSADESGDVHEASYAKASAWYHVTYHPEYYGCYNKIYERPHLISFPWCVYDKLL 1089
Query: 1122 NIKSVNS 1128
+IK S
Sbjct: 1090 HIKQRKS 1096
>gi|15223906|ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
gi|75335341|sp|Q9LQV2.1|RDR1_ARATH RecName: Full=RNA-dependent RNA polymerase 1; Short=AtRDRP1; AltName:
Full=RNA-directed RNA polymerase 1
gi|8778232|gb|AAF79241.1|AC006917_26 F10B6.19 [Arabidopsis thaliana]
gi|110737376|dbj|BAF00633.1| putative RNA-directed RNA polymerase [Arabidopsis thaliana]
gi|332191105|gb|AEE29226.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
Length = 1107
Score = 782 bits (2020), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/1138 (40%), Positives = 669/1138 (58%), Gaps = 69/1138 (6%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKA 64
T+ V P A+++ FLE G +V+A+++ + R VQFTS + ++
Sbjct: 4 TIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKG-GPRVYAIVQFTS-ERHTRL 61
Query: 65 QNLSLNDKLVFNSQNLKISETHSDIVPRPVKAQHRVEDGVLHVGVMCKEERLRVLQTFEG 124
+ ++L + LK E DIVP+P + H + + G ++ L + +
Sbjct: 62 IITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQD 121
Query: 125 VRGWLLPDRRRLEF-WVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFSLDE 183
V R+L F + W +QK +++E+ +E++ + + +
Sbjct: 122 VCVSFGIGMRKLHFSFSW------YQKD------------YRLELSYENIWQ-IDLHSPQ 162
Query: 184 GATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKSIGC 243
G + ++ ++ PKI++K P D Y + D W+RTTDF+ + IG
Sbjct: 163 GRSSKFLVIQVIGAPKIFEKEDQPINLLFGIMDFY---SDGSDEQWIRTTDFTSSSCIGQ 219
Query: 244 STSFFWEIKNGLLASDISNIFPFYKEDK-TDLILEEGEEFCTTSE-IVPLVKCRPGFNLS 301
ST+F E+ L D F Y E + + ++E G + + + +VP+V PGF+L
Sbjct: 220 STAFCLELPVHLNVPDFRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLP 279
Query: 302 HEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALM--VLQKLHKLKSICYDPVSFV 359
E+LF+LN+LV N +S A D + ++L+ + AL+ L+KL L CY+P ++
Sbjct: 280 FEILFKLNTLVQNACLSGPALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWL 339
Query: 360 KTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKY 419
+ + K +PLS L D ++ YR VTP ++Y GPE+ SN V+++++KY
Sbjct: 340 RDEYKKWISKGK-LPLSPTISL-DDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKY 397
Query: 420 ASDFMRVTFVEEDWSKLPANALS--TSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHY 477
++F+RV+FV+ED K+ + LS +S QR RTK+Y RI ++L+DGIVIGDK +
Sbjct: 398 INNFLRVSFVDEDLEKVRSMDLSPRSSTQR-------RTKLYDRIYSVLRDGIVIGDKKF 450
Query: 478 EFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTL 537
EFLAFS+SQLR NS WMFA D ++A +R WMG F+ IR+V+K AAR+GQ FSSS++TL
Sbjct: 451 EFLAFSSSQLRENSAWMFAPIDRITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETL 510
Query: 538 VVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSH-TPSAFQIRYGGY 596
V ++E+IPDVE+ S G Y FSDGIGKIS FAR+VA+KCGL+ +PSAFQIRYGGY
Sbjct: 511 NVRSDEIEVIPDVEIISLGTRYVFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGY 570
Query: 597 KGVIAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEV 656
KGV+AVD NS +KLSLR+SM KFES N L+V WS+ PC++NR++I+LLSTLGV D V
Sbjct: 571 KGVVAVDPNSSKKLSLRKSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSV 630
Query: 657 FEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLS 716
FE Q++ + L +L + A + L + ++ NIL ++L GY+P+ EP+LSMML +
Sbjct: 631 FEKKQREVVDRLDAILTHPLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQN 690
Query: 717 HHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRV 776
++L +L+++ RI++ GR ++GC DET L YGQV V+ +
Sbjct: 691 FRASKLLELRTKTRIFISGGRSMMGCLDETRTLEYGQVVVQYSDPMRP------------ 738
Query: 777 DDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSG 836
+ I+ G V+V KNPCLHPGDVRVL+AV L VDC++FPQKG RPHPNECSG
Sbjct: 739 -GRRFIITGPVVVAKNPCLHPGDVRVLQAVNVPALNH--MVDCVVFPQKGLRPHPNECSG 795
Query: 837 GDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAI 896
DLDGDI+F+ WD +L+P T PMDYT ++I+DHDVT+EE+ ++F +Y++ND+LG I
Sbjct: 796 SDLDGDIYFVCWDQELVPPRTSEPMDYTPEPTQILDHDVTIEEVEEYFANYIVNDSLGII 855
Query: 897 STAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDK 956
+ AH AD++P KA S C+ LA S AVDF KTG A +P L KE+PDFME+ DK
Sbjct: 856 ANAHTAFADKEPLKAFSDPCIELAKKFSTAVDFPKTGVAAVIPQHLYVKEYPDFMEKPDK 915
Query: 957 PRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEM 1016
P Y S V+GKL+R + + S ++ +A SYD D+EVDGFE ++ A K
Sbjct: 916 PTYESKNVIGKLFREVKERAPPLISIKSFTLDVASKSYDKDMEVDGFEEYVDEAFYQKAN 975
Query: 1017 YEEEMNALMNYYGASTEDEILTGN-LRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKE 1075
Y+ ++ LM+YYG TE EIL+G +R S+ +R + + I + + L+ E
Sbjct: 976 YDFKLGNLMDYYGIKTEAEILSGGIMRMSKSFTKRRD------AESIGRAVRALRKETLS 1029
Query: 1076 WFGSSCKENEHPQLASAWYHVTYSPSYCK------ERMALLSFPWIVGDILLNIKSVN 1127
F +S +E ASAWYHVTY SY R LSF W V D L+ IK N
Sbjct: 1030 LFNASEEEENESAKASAWYHVTYHSSYWGLYNEGLNRDHFLSFAWCVYDKLVRIKKTN 1087
>gi|356519367|ref|XP_003528344.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Glycine max]
Length = 1135
Score = 782 bits (2020), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/1157 (40%), Positives = 676/1157 (58%), Gaps = 88/1157 (7%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGR----VQFTSLDF 60
T+ + A+++ FLE G +V A+E+ W+ +G VQFT D
Sbjct: 4 TIQMHGFQSNVSAEEVKKFLEKHTGHQTVHAVEV------WQHKGDPTTHVDVQFT--DR 55
Query: 61 KSKAQNLSL-NDKLVFNSQNLKISETHSDIVPRPVKAQHRVEDGVLHVGVMCKEERLRVL 119
KS L L L ++ L +E + DI P+P HR++D V+H G +++L VL
Sbjct: 56 KSVETILLLVTQHLSYSDYVLNATEINHDIFPKPRNFPHRMDDIVVHFGCQTSKDKLSVL 115
Query: 120 QTFEGVRGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGF 179
V R R + + +++ I SS+ ++E+ D L
Sbjct: 116 WEHPNV-SVKFGSRLRKMYIFFNYLTMDYKLQI------SSESISRIELRHSDDL----- 163
Query: 180 SLDEGATVNGILFKLKYGPKIYQK-VSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVT 238
T +LF+L+ P IY+K VS SK+ KE D W R DF+ +
Sbjct: 164 ------TKKFLLFQLRGAPMIYEKDVS----KSKY-------FKEACDNHWFRGVDFTPS 206
Query: 239 KSIGCSTSFFWEIKNGLLASDISNIFPFYKE-DKTDLILEEGEEFCTTSEIVPLVKCRPG 297
SIG S++ +E+ + + + Y E D + LE+ F + + VP+V G
Sbjct: 207 SSIGQSSTLCFELPQSIEVPKFNQHYRNYSEVDDSIFTLEKHLGFSSNFKFVPIVIPPEG 266
Query: 298 FNLSHEVLFQLNSLVHNQKVSLVAADAELIQILSG--LSMETALMVLQKLHKLKSICYDP 355
FNL +++LF++NSL+ + + ++A D L ++ + +E L KL ++K CY+P
Sbjct: 267 FNLPYKILFKINSLIQHGCLPVLAIDINLFHLVDPRRVRLEYIESALHKLDQMKECCYEP 326
Query: 356 VSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKN 415
+++ Q + N +PLSS L D ++ +R VTP KIY GPE+ SN V++N
Sbjct: 327 AQWLEKQYNKYSTN-SLVPLSSAISL-DDGLVYVHRVQVTPSKIYFCGPEVNLSNRVLRN 384
Query: 416 FAKYASDFMRVTFVEEDWSKLPANAL-----STSIQRGIFSKPYRTKIYSRILTILQDGI 470
+ + +F+RV+FV+ED KL + L ST + R TK++ R+L+ L++GI
Sbjct: 385 YPEDTDNFLRVSFVDEDMDKLHSADLVPRSSSTDVDR-------ETKLHERVLSTLKNGI 437
Query: 471 VIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLF 530
IGDK +EFLAFS SQLR+NSVWMFAS ++A D+R WMG F++IR+V+K AAR+GQ F
Sbjct: 438 AIGDKKFEFLAFSPSQLRDNSVWMFASRTGLTASDIRKWMGEFHEIRNVAKYAARLGQSF 497
Query: 531 SSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGL--SHTPSA 588
SSS++T+ V ++E+IPD+E+ YCF+DGIGKIS A++VA+KCG ++ PSA
Sbjct: 498 SSSRETVSVGEHEIEIIPDIELRRGETKYCFTDGIGKISSELAQEVAKKCGCRDNNIPSA 557
Query: 589 FQIRYGGYKGVIAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLS 648
FQIRYGGYKGV+A+D S KLSLR+SM K++S N L+V WS+ PC+LNR+II+LLS
Sbjct: 558 FQIRYGGYKGVVAIDPTSSTKLSLRKSMFKYKSENTKLDVLAWSKYKPCYLNRQIITLLS 617
Query: 649 TLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEP 708
TLGVKD VF Q++ +L ++ + L VL + + NIL +ML+ G+ EP
Sbjct: 618 TLGVKDRVFRKKQRE---ILNQLKMISTKPLMVLDLMFTGEITNILREMLICGFHQTKEP 674
Query: 709 YLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTR-EELES 767
+LSMML + ++L +L+ + RI V KGR L+GC DET L YG+VFV++ R +++ +
Sbjct: 675 FLSMMLQTLCASKLQELQLKTRILVKKGRALLGCLDETRTLKYGEVFVQIAHQRNKQIHA 734
Query: 768 KDQSFFHRVDDKTS--IVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQK 825
+R S IVKGKV+V KNPCLHPGDVR+L AV L VDC++FPQK
Sbjct: 735 MPSLSSNRYGGNKSKHIVKGKVVVAKNPCLHPGDVRILRAVDVPSLHH--MVDCVVFPQK 792
Query: 826 GERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFV 885
G RPHPNECSG DLDGDI+F+SWD DLIP E PMD+ + +DHDVTL+E+ ++F
Sbjct: 793 GRRPHPNECSGSDLDGDIYFVSWDPDLIPPHQENPMDHAPSQVMNVDHDVTLQEVQEYFA 852
Query: 886 DYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPK 945
Y++ D LG +++AH V AD+DP+KA S C LA LHS+AVDFAK+G PAE+P L+ +
Sbjct: 853 HYIVEDRLGIVASAHTVFADKDPEKAMSPACTELAKLHSIAVDFAKSGVPAEIPQHLRVE 912
Query: 946 EFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEA 1005
E+PDFME+ DKP Y S ++GKLYR + N ++ ++A SYD D+E+DGFE
Sbjct: 913 EYPDFMEKPDKPSYQSNSIIGKLYREVRNVAQHKNLNKTFTRRVARQSYDPDMEIDGFEK 972
Query: 1006 FLGVAESHKEMYEEEMNALMNYYGASTEDEILTGN-LRNRASYLQRDNRRYGDMKDRILL 1064
+ A +K MY+ ++ LM+YYG TE EI++GN L+ S+ +R + + I
Sbjct: 973 YTATACEYKNMYDFKLGNLMDYYGIETEAEIISGNILKMSKSFNERKDL------EGINH 1026
Query: 1065 SAKNLQNEAKEWFG-----SSCKENEHPQLASAWYHVTYSPSYCK------ERMALLSFP 1113
+ +L+ E + WF S+ + + +ASAWY VTY P Y R LSFP
Sbjct: 1027 AVMSLRKETRSWFNVMVNKSNSQGRDAYAIASAWYLVTYHPRYWGSYNQGLNRGHFLSFP 1086
Query: 1114 WIVGDILLNIKSVNSRK 1130
W V D L+ IK R+
Sbjct: 1087 WCVHDTLIQIKKDKVRQ 1103
>gi|113205254|gb|ABI34311.1| RNA dependent RNA polymerase family protein [Solanum demissum]
Length = 963
Score = 782 bits (2019), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/941 (45%), Positives = 594/941 (63%), Gaps = 36/941 (3%)
Query: 206 GPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKSIGCSTSFFWEIKNGLLASDISNIFP 265
P + + + Y KE D WVRTTDF+ + IG S+S + + G+ + F
Sbjct: 21 APRIYKRLENSCYSFFKETPDDQWVRTTDFAPS-WIGLSSSLCLQFRRGVHLPNFQEKFF 79
Query: 266 FYKEDKTDLILEEGEEFCTT--SEIVPLVKCRPGFNLSHEVLFQLNSLVHNQKVSLVAAD 323
Y E + ++ L+ G F + S +VP V+ G + +++LF+++SLV + + A +
Sbjct: 80 HYAERENNITLQTGFTFFISQKSSLVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALN 139
Query: 324 AELIQILSGLSMETALM--VLQKLHKLKSICYDPVSFVKTQL--HVLGRNCKSIPLSSHK 379
+++ A + L+KL+ LK CYDPV ++ Q ++ GR P S
Sbjct: 140 VYFFRLVDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQ----PPKSPS 195
Query: 380 RLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPAN 439
+D ++ R LVTP K+Y GPE+ SN V++N+++ +F+RV+FV+E+W KL +
Sbjct: 196 ITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYST 255
Query: 440 AL--STSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFAS 497
L S GI RT IY RIL+ L+ G VIGDK EFLAFS+SQLR+NSVWMFAS
Sbjct: 256 ELLPKASTGNGI-----RTNIYERILSTLRKGFVIGDKKIEFLAFSSSQLRDNSVWMFAS 310
Query: 498 NDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGN 557
++A D+R WMG F++I++V+K AAR+GQ F SSK+TL V ++E+IPDV+V G
Sbjct: 311 RPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETLSVLRHEIEVIPDVKV--HGT 368
Query: 558 TYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSFRKLSLRRSML 617
+Y FSDGIGKIS FAR+VA KCGL +TPSAFQIRYGGYKGV+AVD S KLSLR+SM
Sbjct: 369 SYVFSDGIGKISADFARRVASKCGLQYTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMS 428
Query: 618 KFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREA 677
K+ES N L+V +WS+ PC+LNR++I+LLSTLGVKD+V E Q++ + L +L +
Sbjct: 429 KYESDNNKLDVLEWSKYQPCYLNRQLITLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLK 488
Query: 678 ALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGR 737
A + L+ ++ ++ NIL ML GY P+ EP+LSMML + ++L DL+++ RI++P GR
Sbjct: 489 AQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPNGR 548
Query: 738 LLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFH--RVDDKTSIVKGKVLVTKNPCL 795
++GC DE+ L YGQVFV+ T S+D F+ R + I+KG V+V KNPCL
Sbjct: 549 AMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCL 608
Query: 796 HPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPC 855
HPGD+RVL AV L VDC++FPQKG+RPHPNECSG DLDGDI+F+ WD D+IP
Sbjct: 609 HPGDIRVLRAVDVPALHH--MVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPP 666
Query: 856 ETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSK 915
PM+Y S +DHDVT+EE+ ++F +Y++ND+LG IS AH+V ADR+PD A S
Sbjct: 667 RQVQPMEYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSLGIISNAHVVFADREPDMAMSDP 726
Query: 916 CLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMER-EDKPRYISFGVLGKLYRATLD 974
C LA L S+AVDF KTG PAE+P L+PKE+PDFM++ DK YIS V+GKL+R D
Sbjct: 727 CKKLAELCSIAVDFPKTGVPAEIPSQLRPKEYPDFMDKPPDKTTYISERVIGKLFRKVKD 786
Query: 975 SIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTED 1034
Q S AI++ +A SYD DLEVDGFE ++ A +K Y+ ++ LM+YYG TE
Sbjct: 787 KAPQASSTAIFTRDVARRSYDADLEVDGFEDYIDEAFDYKTEYDSKLGNLMDYYGIKTEA 846
Query: 1035 EILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSCKENEHPQLASAWY 1094
EIL+G + + R + I ++ + L+ EA+ WF ++ ASAWY
Sbjct: 847 EILSGGIMKTSKTFDRRKD-----AEAISIAVRALRKEARTWFKRHNDIDDMLPKASAWY 901
Query: 1095 HVTYSPSY--CK----ERMALLSFPWIVGDILLNIKSVNSR 1129
HVTY P+Y C +R +SFPW V D L+ IK +R
Sbjct: 902 HVTYHPTYWGCYNQGLKRDHFISFPWCVYDQLIQIKKEKAR 942
>gi|224099569|ref|XP_002311535.1| rna-dependent RNA polymerase [Populus trichocarpa]
gi|222851355|gb|EEE88902.1| rna-dependent RNA polymerase [Populus trichocarpa]
Length = 1139
Score = 780 bits (2014), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 452/1126 (40%), Positives = 659/1126 (58%), Gaps = 88/1126 (7%)
Query: 17 AKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFN 76
++D+ FLE G +V ++++ S SR +VQFT+ AQ + L
Sbjct: 55 SEDIKEFLEEYSGDGTVVSVDVDQTISE-GSRTKAKVQFTT---SEAAQKVKLR------ 104
Query: 77 SQNLKISETHSDIVPRPVKAQHRVEDGVLHVGVMCKEERLRVLQTFEGVR-GWLLPDRRR 135
LK+ + DIVP + A++ +++ LH G +E+ L E V + +R+
Sbjct: 105 -SYLKVRDMDYDIVPTRMAAEYTIDNITLHFGCQVSKEKFYALWNKENVSVKFGFGNRKI 163
Query: 136 LEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFSLDEGATVNGILFKLK 195
F + +K+E+ +E++ + + G ++ ++
Sbjct: 164 YLFLTYLSTK------------------YKLELSYENIWQ-IELHRPRGQAKKFLIVQML 204
Query: 196 YGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKSIGCSTSFFWEIKNGL 255
KI K+D D WVR DFS + IG S++ E+
Sbjct: 205 GAAKI--------------------LKKDTDDQWVRDVDFSPSYCIGQSSALCLELPRSG 244
Query: 256 LASDISNIFPFYKEDKTDLILEEGEEFCTTSEIVPLVKCRPGFNLSHEVLFQLNSLVHNQ 315
+ FP YKED+ LE G FC S++VP+++ G L ++++F++NSLV +
Sbjct: 245 QLPNFQENFPCYKEDEGRFFLEVGSTFCRVSDLVPILREAQGIELPYDIVFKVNSLVQHG 304
Query: 316 KVSLVAADAELIQILSGLSMETALM--VLQKLHKLKSICYDPVSFVKTQLHVLGRNCKS- 372
+ A DA ++++ + A + L+KLH CYDPV +++ + R C S
Sbjct: 305 YLPGPALDASFYRLINPSRVNIAHIQNALEKLHHSMECCYDPVRWLREEY----RKCIST 360
Query: 373 --IPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVE 430
+P + +D ++ R +TP K+Y GPE+ SN V++ + +F+RV+FV+
Sbjct: 361 GRLP-TPPAVAVDDGLVHVRRVQITPTKVYFRGPEVNLSNRVLRKYPDDIDNFLRVSFVD 419
Query: 431 EDWSKLPANALSTSIQRGIFS--KPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLR 488
ED KL ST+I FS + +TKIY RIL+ ++GIVIG K +EFL FS+SQLR
Sbjct: 420 EDLDKL----FSTNISPRTFSAIEGRQTKIYQRILSTQRNGIVIGSKKFEFLGFSSSQLR 475
Query: 489 NNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIP 548
+S+WMFAS + A D+R WMG F +I++V+K AAR+GQ F SS+++ + +++E IP
Sbjct: 476 ESSLWMFASRTGLRAADIRRWMGDFREIKNVAKYAARLGQSFGSSRESFNIDEKEIEKIP 535
Query: 549 DVEVTSDGNTYCFSDGIGKISLSFARQVAQKCG-LSHTPSAFQIRYGGYKGVIAVDRNSF 607
D+EV S G Y FSDGIGKIS + A +AQK G LS TPSAFQIRYGGYKGV+AVD S
Sbjct: 536 DIEVRSGGVDYVFSDGIGKISAALAHSIAQKFGFLSFTPSAFQIRYGGYKGVVAVDPTSL 595
Query: 608 RKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLIL 667
+KLSLRRSM K++S N L++ WS+ C+LNRE+I+LLSTLGV+D +F+ Q++ +
Sbjct: 596 KKLSLRRSMSKYKSTNTSLDILGWSKYQACYLNREVITLLSTLGVRDHIFQRKQKEAIAQ 655
Query: 668 LGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKS 727
L +L + +A + L+ + +S N+L +ML GY+P EP+L+MML + ++L DL++
Sbjct: 656 LNAILTDPSSAQEALELMAPGESTNVLKEMLACGYKPGAEPFLAMMLQTFCASKLLDLRT 715
Query: 728 RCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKV 787
R RI++PKGR ++GC DET L YGQ FV+ + R + +D S T I+KGK+
Sbjct: 716 RARIFIPKGRAMMGCLDETRTLGYGQAFVQYSSARHG-QFRDHSRGGEAVRNTQILKGKL 774
Query: 788 LVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFIS 847
+V KNPCLHPGDVRVLEAV L VDCI+FPQKG+RPH NECSG DLDGD++F+
Sbjct: 775 IVAKNPCLHPGDVRVLEAVNVPALHH--MVDCIVFPQKGKRPHANECSGSDLDGDVYFVC 832
Query: 848 WDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRD 907
WD DLIP T PPMDYT + I+DHDVT+EE+ ++F DY++ND+LG I AH V ADRD
Sbjct: 833 WDPDLIPPRTFPPMDYTAAPTTILDHDVTIEEVQEYFTDYLLNDSLGIICNAHTVFADRD 892
Query: 908 PDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMER-EDKPRYISFGVLG 966
P ARS +C+ LA L S+AVDF KTG PA++P L+ KE+PDFME+ DK Y S VLG
Sbjct: 893 PLMARSKECIELARLSSIAVDFPKTGVPAKIPRELRVKEYPDFMEKAADKRTYESQRVLG 952
Query: 967 KLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMN 1026
KL+R D +++++A SYD D+EVDGF+ + A +K +Y+ ++ +M+
Sbjct: 953 KLFRDVRDIAPDTSPVRSFTKEMARRSYDPDMEVDGFQKHIDEAFHYKSVYDNKLGNMMD 1012
Query: 1027 YYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSCKENEH 1086
YYG TE EI++G++ D +R D D I S ++L+ +A+ WF S +N
Sbjct: 1013 YYGIKTEAEIISGSIMKVGKSF--DKKR--DF-DSINYSIRSLRKQARAWFDES--DNSP 1065
Query: 1087 PQL---ASAWYHVTYSPSYCKE------RMALLSFPWIVGDILLNI 1123
L ASAWY+VTY PSY R+ LSFPW D L++I
Sbjct: 1066 DDLYAKASAWYYVTYHPSYWGRYNEGMNRVHFLSFPWCFYDKLIDI 1111
>gi|24935275|gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
Length = 1107
Score = 779 bits (2011), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/1138 (40%), Positives = 668/1138 (58%), Gaps = 69/1138 (6%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKA 64
T+ V P A+++ FLE G +V+A+++ + R VQFTS + ++
Sbjct: 4 TIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKG-GPRVYAIVQFTS-ERHTRL 61
Query: 65 QNLSLNDKLVFNSQNLKISETHSDIVPRPVKAQHRVEDGVLHVGVMCKEERLRVLQTFEG 124
+ ++L + LK E DIVP+P + H + + G ++ L + +
Sbjct: 62 IITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQD 121
Query: 125 VRGWLLPDRRRLEF-WVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFSLDE 183
V R+L F + W +QK +++E+ +E++ + + +
Sbjct: 122 VCVSFGIGMRKLHFSFSW------YQKD------------YRLELSYENIWQ-IDLHSPQ 162
Query: 184 GATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKSIGC 243
G + ++ ++ PKI++K P D Y + D W+RTTDF+ + IG
Sbjct: 163 GRSSKFLVIQVIGAPKIFEKEDQPINLLFGIMDFY---SDGSDEQWIRTTDFTSSSCIGQ 219
Query: 244 STSFFWEIKNGLLASDISNIFPFYKEDK-TDLILEEGEEFCTTSE-IVPLVKCRPGFNLS 301
ST+F E+ L D F Y E + + ++E G + + + +VP+V PGF+L
Sbjct: 220 STAFCLELPVHLNVPDFRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLP 279
Query: 302 HEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALM--VLQKLHKLKSICYDPVSFV 359
E+LF+LN+LV N +S A D + ++L+ + AL+ L+KL L CY+P ++
Sbjct: 280 FEILFKLNTLVQNACLSGPALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWL 339
Query: 360 KTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKY 419
+ + K +PLS L D ++ YR VTP ++Y GPE+ SN V+++++KY
Sbjct: 340 RDEYKKWISKGK-LPLSPTISL-DDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKY 397
Query: 420 ASDFMRVTFVEEDWSKLPANALS--TSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHY 477
++F+RV+FV+ED K+ + LS +S QR RTK+Y RI ++L+DGIVIGDK +
Sbjct: 398 INNFLRVSFVDEDLEKVRSMDLSPRSSTQR-------RTKLYDRIYSVLRDGIVIGDKKF 450
Query: 478 EFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTL 537
EFLAFS+SQLR NS WMFA D ++A +R WMG F+ IR+V+K AAR+GQ FSSS++TL
Sbjct: 451 EFLAFSSSQLRENSAWMFAPIDRITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETL 510
Query: 538 VVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSH-TPSAFQIRYGGY 596
V ++E+IPDVE+ S G Y FSDGIGKIS FAR+VA+KCGL+ +PSAFQIRYGGY
Sbjct: 511 NVRSDEIEVIPDVEIISLGTRYVFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGY 570
Query: 597 KGVIAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEV 656
KGV+AVD NS +KLSLR+SM KFES N L+V WS+ PC++NR++I+LLSTLGV D V
Sbjct: 571 KGVVAVDPNSSKKLSLRKSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSV 630
Query: 657 FEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLS 716
FE Q++ + L +L + A + L + ++ NIL ++L GY+P+ EP+LSMML +
Sbjct: 631 FEKKQREVVDRLDAILTHPLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQN 690
Query: 717 HHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRV 776
++L +L+++ RI++ GR ++GC DET L YGQV V+ +
Sbjct: 691 FRASKLLELRTKTRIFISGGRSMMGCLDETRTLEYGQVVVQYSDPMRP------------ 738
Query: 777 DDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSG 836
+ I+ G V+V KNPCLH GDVRVL+AV L VDC++FPQKG RPHPNECSG
Sbjct: 739 -GRRFIITGPVVVAKNPCLHSGDVRVLQAVNVPALNH--MVDCVVFPQKGLRPHPNECSG 795
Query: 837 GDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAI 896
DLDGDI+F+ WD +L+P T PMDYT ++I+DHDVT+EE+ ++F +Y++ND+LG I
Sbjct: 796 SDLDGDIYFVCWDQELVPPRTSEPMDYTPEPTQILDHDVTIEEVEEYFANYIVNDSLGII 855
Query: 897 STAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDK 956
+ AH AD++P KA S C+ LA S AVDF KTG A +P L KE+PDFME+ DK
Sbjct: 856 ANAHTAFADKEPLKAFSDPCIELAKKFSTAVDFPKTGVAAVIPQHLYVKEYPDFMEKPDK 915
Query: 957 PRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEM 1016
P Y S V+GKL+R + + S ++ +A SYD D+EVDGFE ++ A K
Sbjct: 916 PTYESKNVIGKLFREVKERAPPLISIKSFTLDVASKSYDKDMEVDGFEEYVDEAFYQKAN 975
Query: 1017 YEEEMNALMNYYGASTEDEILTGN-LRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKE 1075
Y+ ++ LM+YYG TE EIL+G +R S+ +R + + I + + L+ E
Sbjct: 976 YDFKLGNLMDYYGIKTEAEILSGGIMRMSKSFTKRRD------AESIGRAVRALRKETLS 1029
Query: 1076 WFGSSCKENEHPQLASAWYHVTYSPSYCK------ERMALLSFPWIVGDILLNIKSVN 1127
F +S +E ASAWYHVTY SY R LSF W V D L+ IK N
Sbjct: 1030 LFNASEEEENESAKASAWYHVTYHSSYWGLYNEGLNRDHFLSFAWCVYDKLVRIKKTN 1087
>gi|224111420|ref|XP_002315849.1| rna-dependent RNA polymerase [Populus trichocarpa]
gi|222864889|gb|EEF02020.1| rna-dependent RNA polymerase [Populus trichocarpa]
Length = 1102
Score = 779 bits (2011), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 450/1144 (39%), Positives = 664/1144 (58%), Gaps = 70/1144 (6%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKA 64
T+ + P D+ FLE G+ +V A+ + +S SR V+FT+ +
Sbjct: 4 TISLYGFPTVEPPDDIKEFLEEYSGEGTVVAVHVAQPKSA-GSRTNAIVEFTTSEAAQNI 62
Query: 65 QNLSLNDK-LVFNSQNLKISETHSDIVP--RPVKAQHRVEDGVLHVGVMCKEERLRVLQT 121
+ SL+D+ L + + LK + + D VP + + Q+ +++ LH G +E+ VL T
Sbjct: 63 KLKSLDDEGLWYGNSYLKARDVYRDTVPMRKAFQTQYSMDNITLHFGCQVSKEKFSVLWT 122
Query: 122 FEGVRGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFSL 181
+ V + R+ F++ +K+E+ +E++ + +
Sbjct: 123 QKDVSVKFGVELRKFHFFLTHLSKN-----------------YKLELSYENIFQ-IELHR 164
Query: 182 DEGATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKSI 241
G T +L ++ GPKI++K + S F KE D W+R DFS + I
Sbjct: 165 PRGKTKKYLLVQMLGGPKIFKKDTSK--LSNF--------KEATDDQWIRDVDFSPSYCI 214
Query: 242 GCSTSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTTSEIVPLVKCRPGFNLS 301
G S++ E+ + F YKED+ ILE+G FC S++VP++ L
Sbjct: 215 GQSSALCLELPPNSQLPNFQENFVCYKEDEGHFILEKGSTFCCKSDLVPILSAAQVSELP 274
Query: 302 HEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQ----KLHKLKSICYDPVS 357
++++F++NSLV + + A DA ++++ + A +Q KL LK CYDP
Sbjct: 275 YDIVFKVNSLVQHGCLPGPALDARFFRLINPSKIRIAHAYIQHALEKLSHLKECCYDPAR 334
Query: 358 FVKTQLH---VLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVK 414
+++ Q GR ++ +D ++ R +TP K+Y GP++ SN V++
Sbjct: 335 WLREQYQKYLTTGRLPTPPAIA-----VDDGLVFLRRVQITPTKLYFCGPDVNLSNRVLR 389
Query: 415 NFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGD 474
+ +F+RV+FV+ED KL + +S I + +T IY RIL++ ++GI IG
Sbjct: 390 KYPGDIDNFLRVSFVDEDLDKLFSANISPRTFSAIEGR--QTNIYQRILSVQRNGITIGS 447
Query: 475 KHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSK 534
K +EFL FS SQ+R +S+WMFAS ++A D+R WMG F +I++V+K AAR+GQ FSSS+
Sbjct: 448 KKFEFLGFSQSQVRESSLWMFASRPGLTAADIREWMGDFREIKNVAKYAARLGQSFSSSR 507
Query: 535 QTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGL-SHTPSAFQIRY 593
++ + ++E+IPD+EV S G Y FSDGIGKIS A +A+K L S TPSAFQIRY
Sbjct: 508 ESFNIDRHEIEIIPDIEVKSGGVNYVFSDGIGKISAELADSIARKLRLRSFTPSAFQIRY 567
Query: 594 GGYKGVIAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVK 653
GGYKGV+AVD S KLSLRRSM K++S N L++ WS+ CFLNRE+I LLSTLGVK
Sbjct: 568 GGYKGVVAVDPTSSMKLSLRRSMSKYKSTNTSLDILDWSKYRACFLNREVIILLSTLGVK 627
Query: 654 DEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMM 713
D+VFE Q++ + L +L + A + L+ + G ++ +L ML GY+P EP+L+MM
Sbjct: 628 DQVFERKQKEAIAQLDAILTDPIKAQEALELMAGGENARVLNGMLACGYKPGAEPFLAMM 687
Query: 714 LLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFF 773
L + +L DL+++ RI+VP GR + GC DET L YGQ FV+ + R +S D
Sbjct: 688 LETFRALKLLDLRTKSRIFVPNGRAMTGCLDETRTLEYGQAFVQYSRARLS-KSHDHFKG 746
Query: 774 HRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNE 833
+ D T IV+GK++V KNPCLHPGDV++L+AV L VDCI+FPQKG+RPH NE
Sbjct: 747 GKTDQHTLIVRGKIVVAKNPCLHPGDVQILKAVDVPALHH--MVDCIVFPQKGKRPHTNE 804
Query: 834 CSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTL 893
CSG DLDGD++F+ WD DLIP + PPMDYT ++ I+DHDVT+EE+ ++F DY++ND+L
Sbjct: 805 CSGSDLDGDVYFVCWDTDLIPPQKFPPMDYTAPQTTILDHDVTIEEVQEYFADYLLNDSL 864
Query: 894 GAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMER 953
G I TAH+V AD +PD ARS KC+ LA L S+AVDF KTG PA++P L+ KE+PDFME+
Sbjct: 865 GIICTAHVVFADSEPDMARSEKCIELAQLSSIAVDFPKTGVPAKIPKELRVKEYPDFMEK 924
Query: 954 E--DKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAE 1011
Y+S VLGKL+RA D ++++ A+ SYD D+EVDGF+ ++ A
Sbjct: 925 AAYKHTTYVSQRVLGKLFRAVRDIAPDTSPVRPFTKEAAKRSYDPDMEVDGFKDYINEAF 984
Query: 1012 SHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKD--RILLSAKNL 1069
+K Y+ ++ +M+YYG TE EI+ G + R R + KD I S +L
Sbjct: 985 YYKSEYDNKLGNMMDYYGIKTEAEIIGGC-------IMRMGRSFDKKKDLEGINFSVSSL 1037
Query: 1070 QNEAKEWF---GSSCKENEHPQLASAWYHVTYSPSY------CKERMALLSFPWIVGDIL 1120
+ +A+ WF GS ++ + ASAWYHVTY P + +R+ LSFPW V D L
Sbjct: 1038 RKQARAWFNESGSKESPDDVYRKASAWYHVTYHPRFWGLYNEGMDRVHFLSFPWCVHDKL 1097
Query: 1121 LNIK 1124
IK
Sbjct: 1098 FEIK 1101
>gi|449457379|ref|XP_004146426.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Cucumis sativus]
gi|449491619|ref|XP_004158954.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Cucumis sativus]
gi|316989899|gb|ADU77015.1| RNA-dependent RNA polymerase 1a [Cucumis sativus]
Length = 1130
Score = 779 bits (2011), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 463/1152 (40%), Positives = 682/1152 (59%), Gaps = 79/1152 (6%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGR----VQFTSLDF 60
T+ +S P A + FLE G +V+A+++ + RG GR VQFTS
Sbjct: 4 TIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPK-----RGGGRLYAIVQFTSATQ 58
Query: 61 KSKAQNLSLNDKLVFNSQNLKISETHSDIVPRPVKAQHRVEDGVLHVGVMCKEERLRVLQ 120
+L+ N +L + S LK T DIVP+P + +E+ +L G E+ RVL
Sbjct: 59 AELIISLA-NQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVL- 116
Query: 121 TFEGVRGWLL--PDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVG 178
+EG + R++ F + K ++ +++E+ +E ++ +
Sbjct: 117 -WEGNVDLVTFGIGMRKMNFHLK-------YKSVE----------YRLELSYE-IIWQIQ 157
Query: 179 FSLDEGATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVT 238
++ +L +L P+IY+KV+ P+ F + + KE D WVRTTDF+ +
Sbjct: 158 LHCPRDQSMKYLLIQLSGAPRIYKKVA-PNSGQIFDNPLLNFFKEASDDQWVRTTDFTSS 216
Query: 239 KSIGCSTSFFWEIKNGLLASDISNIFPFYKEDKTDL-ILEEGEEFCTTSEIVPLVKCRPG 297
SIG S+S ++ NG F +Y+E + + +++E F ++ P+V R
Sbjct: 217 CSIGQSSSLCLKLPNGRQLPPFKQNFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSH 276
Query: 298 FNLSHEVLFQLNSLVHNQKVSLVAADA---ELIQILSGLSMETALMVLQKLHKLKSICYD 354
L +++LF++N+LV + DA L++ + +E L+KL LK YD
Sbjct: 277 V-LPYKILFKINALVQYGCIPWPLLDASFYRLVERIITTRIEFVEHALEKLFHLKECNYD 335
Query: 355 PVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVK 414
P +F+ Q R+ + P+ S +D ++ R +TP K++ GPE+ SN V++
Sbjct: 336 PSNFLTEQYRKYSRHPPNSPVIS----LDDGLVYVRRVQITPCKVFFCGPEVNVSNRVLR 391
Query: 415 NFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGD 474
+F++Y +F+RV+FV+E+W K+ + L + S+ +T IY RIL++L++GIVIGD
Sbjct: 392 HFSQYIDNFLRVSFVDEEWDKMRSTDLLPRMSSK--SEDGKTDIYRRILSVLKNGIVIGD 449
Query: 475 KHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSK 534
K ++FLAFS+SQLR+NS+WMFAS ++ A +R WMG F I++ +K AAR+GQ F SS
Sbjct: 450 KTFQFLAFSSSQLRDNSLWMFASGPDIDAAYIRAWMGDFRHIKNPAKYAARLGQSFGSST 509
Query: 535 QTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYG 594
+ L V + E+IPD+EV Y FSDGIGKIS FA++VA KCG PSAFQIRYG
Sbjct: 510 EALSVASNEREIIPDIEVQQGEIKYVFSDGIGKISSKFAKEVAAKCGFQAVPSAFQIRYG 569
Query: 595 GYKGVIAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKD 654
GYKGV+AVD S KLSLR+SM KFES N L+V S+ PCFLNR++I+L+STLGV+D
Sbjct: 570 GYKGVVAVDPYSTIKLSLRKSMCKFESDNTKLDVLGHSKYQPCFLNRQLITLMSTLGVRD 629
Query: 655 EVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMML 714
E+FE Q + + L +L + A + L+ ++ ++ NIL +ML GY+P+VEPYLSMML
Sbjct: 630 EIFEKKQSEAVEQLDAILTDPLKAQEALELMSPGENTNILKEMLKCGYQPDVEPYLSMML 689
Query: 715 LSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFH 774
+ ++L +L+++ RI++P GR ++GC DET L YGQVFV+++ R S+ +F
Sbjct: 690 QTFRASKLLELRTKSRIFIPNGRAMMGCLDETRTLEYGQVFVQISSGRHRNLSESFAFNR 749
Query: 775 RVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAV-----YEMKLEEKDYVDCIIFPQKGERP 829
+ +++G V V KNPCLHPGDVRVL+AV Y M VDC++FPQKG RP
Sbjct: 750 IGREHHLVIEGNVTVAKNPCLHPGDVRVLKAVNIPGLYHM-------VDCVVFPQKGSRP 802
Query: 830 HPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMI 889
HPNECSG DLDGDI+F+ WD +LIP PPMDYT +D DVT E+I ++FV+YM+
Sbjct: 803 HPNECSGSDLDGDIYFVCWDTELIPSRQIPPMDYTPAPPNELDRDVTTEDIQEYFVNYMV 862
Query: 890 NDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPD 949
ND+LG I+ AH AD++ KARSS CL LA L S+AVDF KTG PA +P L KEFPD
Sbjct: 863 NDSLGIIANAHTAFADKELFKARSSPCLELAKLFSVAVDFPKTGVPAIIPSHLYVKEFPD 922
Query: 950 FMEREDKPRYISFGVLGKLYRATLD---SIMQIRSNAIWSEKIAEASYDHDLEVDGFEAF 1006
FME+ D+P Y S V+GKL+RA D ++ IRS ++ +A YD D+EV+GFE +
Sbjct: 923 FMEKPDRPSYESNKVIGKLFRAVKDIAPTLSHIRS---FTRDVARRCYDCDMEVEGFEDY 979
Query: 1007 LGVAESHKEMYEEEMNALMNYYGASTEDEILTGN-LRNRASYLQRDNRRYGDMKDRILLS 1065
+ A HK Y+ ++ L++YYG +E E+L+G+ +R S+ +R + + I L+
Sbjct: 980 VEDAFYHKSNYDYKLGNLLDYYGIKSEAEVLSGSIMRMSKSFTRRRD------AEAINLA 1033
Query: 1066 AKNLQNEAKEWF----GSSCKENEHPQLASAWYHVTYSPSY--C----KERMALLSFPWI 1115
++L+ EA+ WF G+ ++ ASAWY+VTY SY C +R LSFPW
Sbjct: 1034 VRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWGCYNEGMKRDHYLSFPWC 1093
Query: 1116 VGDILLNIKSVN 1127
V D L+ IK N
Sbjct: 1094 VYDKLMQIKENN 1105
>gi|113205271|gb|AAT38699.2| RNA dependent RNA polymerase family protein [Solanum demissum]
Length = 963
Score = 775 bits (2002), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/945 (44%), Positives = 593/945 (62%), Gaps = 36/945 (3%)
Query: 202 QKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKSIGCSTSFFWEIKNGLLASDIS 261
Q P + + + Y KE D WVRTTDF+ + IG S+S + + G+ +
Sbjct: 17 QLFGAPRIYKRLENSCYSFFKETPDDQWVRTTDFTPS-WIGLSSSLCLQFRRGVHLPNFQ 75
Query: 262 NIFPFYKEDKTDLILEEGEEFCTT--SEIVPLVKCRPGFNLSHEVLFQLNSLVHNQKVSL 319
F Y E + ++ L+ G F + S +VP V+ G + +++LF+++SLV + +
Sbjct: 76 ESFFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPG 135
Query: 320 VAADAELIQILSGLSMETALM--VLQKLHKLKSICYDPVSFVKTQL--HVLGRNCKSIPL 375
A + +++ A + L+KL+ LK CYDPV ++ Q ++ GR P
Sbjct: 136 PALNVYFFRLVDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQ----PP 191
Query: 376 SSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSK 435
S +D ++ R LVTP K+Y GPE+ SN V++N+++ +F+RV+FV+E+W K
Sbjct: 192 KSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEK 251
Query: 436 LPANAL--STSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVW 493
L + L S GI RT IY RIL+ L+ G VIGDK +EFLAFS+SQLR+NSVW
Sbjct: 252 LYSTELLPKASTGNGI-----RTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVW 306
Query: 494 MFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVT 553
MFAS ++ D+R WMG F++I++V+K AAR+GQ F SS++TL V ++E+IPDV+V
Sbjct: 307 MFASRRGLTTNDIRSWMGDFSQIKNVAKYAARLGQSFGSSRETLSVLRHEIEVIPDVKV- 365
Query: 554 SDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSFRKLSLR 613
G +Y FSDGIGKIS FAR+VA KCGL +TPSAFQIRYGGYKGV+AVD S KLSLR
Sbjct: 366 -HGTSYVFSDGIGKISADFARRVASKCGLQYTPSAFQIRYGGYKGVVAVDPYSSMKLSLR 424
Query: 614 RSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLI 673
+SM K+ES N L+V WS+ PC+LNR++++LLSTLGVKD+V E Q++ + L +L
Sbjct: 425 KSMSKYESDNNKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAVHQLDAILH 484
Query: 674 NREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYV 733
+ A + L+ ++ ++ NIL ML GY P+ EP+LSMML + ++L DL++R RI++
Sbjct: 485 DSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFI 544
Query: 734 PKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFH--RVDDKTSIVKGKVLVTK 791
P GR ++GC DE+ L YGQVFV+ T S+D F+ R + I+KG V+V K
Sbjct: 545 PNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFILKGNVVVAK 604
Query: 792 NPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDND 851
NPCLHPGD+RVL AV L VDC++FPQKG+RPHPNECSG DLDGDI+F+ WD D
Sbjct: 605 NPCLHPGDIRVLRAVDVPALHH--MVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQD 662
Query: 852 LIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKA 911
+IP M+Y S +DH+VT+EE+ ++F +Y++ND+LG I+ AH+V ADR+PD A
Sbjct: 663 MIPPRQVQAMEYPPAPSIQLDHNVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMA 722
Query: 912 RSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMER-EDKPRYISFGVLGKLYR 970
S C LA L S+AVDF KTG PAE+P L+PKE+PDFM++ DK YIS V+GKL+R
Sbjct: 723 MSDPCKKLAELFSIAVDFPKTGVPAEIPSQLRPKEYPDFMDKPPDKTTYISERVIGKLFR 782
Query: 971 ATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGA 1030
D Q S AI++ +A SYD DLEVDGFE ++ A +K Y+ ++ LM+YYG
Sbjct: 783 KVKDKAPQASSIAIFTRDVARRSYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGI 842
Query: 1031 STEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSCKENEHPQLA 1090
TE EIL+G + + R + I ++ + L+ EA+ WF ++ A
Sbjct: 843 KTEAEILSGGIMKASKTFDRRKD-----AEAISVAVRALRKEARTWFKRRNDIDDMLPKA 897
Query: 1091 SAWYHVTYSPSY--CK----ERMALLSFPWIVGDILLNIKSVNSR 1129
SAWYHVTY P+Y C +R +SFPW V D L+ IK +R
Sbjct: 898 SAWYHVTYHPTYWGCYNQGLKRDHFISFPWCVYDQLIQIKKEKAR 942
>gi|113205257|gb|AAT38687.2| RNA-directed RNA polymerase, putative [Solanum demissum]
Length = 1139
Score = 769 bits (1987), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/990 (43%), Positives = 600/990 (60%), Gaps = 77/990 (7%)
Query: 184 GATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKSIGC 243
G +L +L P+IY+++ + Y KE D WVRTTDF+ + IG
Sbjct: 152 GQNAQFLLIQLFGAPRIYKRLE---------NSCYSFFKETPDDQWVRTTDFAPS-WIGL 201
Query: 244 STSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTT--SEIVPLVKCRPGFNLS 301
S+S + + G+ + F Y E + ++ L+ G F + S +VP V+ G +
Sbjct: 202 SSSLCLQFRRGVHLPNFQESFFHYTERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIP 261
Query: 302 HEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALM--VLQKLHKLKSICYDPVSFV 359
+++LF+++SLV + + A D +++ A + L+KL+ LK CYDPV ++
Sbjct: 262 YKILFKISSLVQHGCIPGPALDVYFFRLVDPQRRNVACIEQALEKLYYLKECCYDPVRWL 321
Query: 360 KTQL--HVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFA 417
Q ++ GR P S +D ++ R LVTP K+Y GPE+ SN V++N++
Sbjct: 322 TEQYDGYLKGRQ----PPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYS 377
Query: 418 KYASDFMRVTFVEEDWSKLPANAL--STSIQRGIFSKPYRTKIYSRILTILQDGIVIGDK 475
+ +F+RV+FV+E+W KL + L S GI RT IY RIL+ L+ G VIGDK
Sbjct: 378 EDIDNFLRVSFVDEEWEKLYSTDLLPKASTGNGI-----RTNIYERILSTLRKGFVIGDK 432
Query: 476 HYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQ 535
+EFLAFS+SQLR+NSVWMFAS ++A D+R WMG F++I++V+K AAR+GQ F SSK+
Sbjct: 433 KFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSKE 492
Query: 536 TLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGG 595
TL V ++E+IPDV+V G +Y FSDGIGKIS FAR+VA KCGL +TPSAFQIRYGG
Sbjct: 493 TLSVLRHEIEVIPDVKV--HGTSYVFSDGIGKISADFARRVASKCGLQYTPSAFQIRYGG 550
Query: 596 YKGVIAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDE 655
YKGV+AVD S KLSLR+SM K+ES N L+V WS+ PC+LNR++++LLSTLGVKD+
Sbjct: 551 YKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDD 610
Query: 656 VFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLL 715
V E Q++ + L +L + A + L+ ++ ++ IL ML GY P+ EP+LSMML
Sbjct: 611 VLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTTILKAMLNCGYMPDAEPFLSMMLQ 670
Query: 716 SHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFH- 774
+ ++L DL++R RI++P GR ++GC DE+ L YGQVFV+ T S+D F+
Sbjct: 671 TFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNN 730
Query: 775 -RVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKG------- 826
R + I+KG V+V KNPCLHPGD+RVL AV L VDC++FPQKG
Sbjct: 731 SRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHH--MVDCVVFPQKGKRLGMYF 788
Query: 827 --------------------------ERPHPNECSGGDLDGDIFFISWDNDLIPCETEPP 860
+RPHPNECSG DLDGDI+F+ WD D+IP P
Sbjct: 789 NCLPTSEVEVKSAYTLPSSDPTLCFDDRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQP 848
Query: 861 MDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLA 920
M+Y S +DHDVT+EE+ ++F +Y++ND+LG I+ AH+V ADR+PD A S C LA
Sbjct: 849 MEYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLA 908
Query: 921 TLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIR 980
L S+AVDF KTG PAE+P L+PKE+PDFM++ DK YIS V+GKL+R D Q
Sbjct: 909 ELFSIAVDFPKTGVPAEIPSQLRPKEYPDFMDKPDKTTYISERVIGKLFRKVKDKAPQAS 968
Query: 981 SNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGN 1040
S AI++ +A SYD DLEVDGFE ++ A +K Y+ ++ LM+YYG TE EIL+G
Sbjct: 969 SIAIFTRDVARRSYDVDLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGG 1028
Query: 1041 LRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSCKENEHPQLASAWYHVTYSP 1100
+ + R + I ++ + L+ EA+ WF ++ ASAWYHVTY P
Sbjct: 1029 IMKTSKTFDRRKD-----AEAISIAVRALRKEARTWFKRRNDIDDMLPKASAWYHVTYHP 1083
Query: 1101 SY--CK----ERMALLSFPWIVGDILLNIK 1124
+Y C +R +SFPW V D L+ IK
Sbjct: 1084 TYWGCYNQGLKRDHFISFPWCVYDQLIQIK 1113
Score = 42.4 bits (98), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 56/122 (45%), Gaps = 6/122 (4%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKA 64
T+ V P A+ + FLE G +V ALE+ +S SR +VQF K
Sbjct: 30 TIQVYGFPDLLSAEVVKSFLEKHTGYGTVCALEV--KQSKRGSRAFAKVQFVDNISADKI 87
Query: 65 QNLSLNDKLVFNSQNLKISETHSDIVPRPVKAQHRVEDGV-LHVGVMCKEERLRVLQTFE 123
NL+ + +L F S LK E +DIV H DG+ L+ G +++ VL + E
Sbjct: 88 INLA-SKRLYFGSSYLKAWEMKADIVQLRAYVDHM--DGITLNFGCQISDDKFAVLGSTE 144
Query: 124 GV 125
V
Sbjct: 145 VV 146
>gi|449457381|ref|XP_004146427.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Cucumis sativus]
gi|449491623|ref|XP_004158955.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Cucumis sativus]
gi|316989901|gb|ADU77016.1| RNA-dependent RNA polymerase 1b [Cucumis sativus]
Length = 1115
Score = 763 bits (1971), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/1157 (38%), Positives = 674/1157 (58%), Gaps = 80/1157 (6%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKA 64
T+ + P + + + F+E G ++ A+ + +S+G GR + + F +
Sbjct: 4 TIQLFGFPSGVLQESVKTFVEGITGTGTIDAI------NTKRSKGGGRRVYAIIQFTDEE 57
Query: 65 QNLSL----NDKLVFNSQNLKISETHSDIVPRPVKAQHRVEDGVLHVGVMCKEERLRVLQ 120
S+ ++L + + LK E DI+P P+ + + LH+G +E VL
Sbjct: 58 GAKSIISKATERLCYGTSYLKAREMKHDILPDPLVFDYNFKALRLHLGCQISKESFSVLW 117
Query: 121 TFEGVRGWLLPDRRRLEFWV-WPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGF 179
T V + R+L F++ +P+ + + + + +E++ + V
Sbjct: 118 TESNVSVDFGFELRKLYFFISYPRVD------------------YMLVLRYENIWQ-VEL 158
Query: 180 SLDEGATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTK 239
G +V+ +L +L P+IY++ + D + + D W R TDF+ +
Sbjct: 159 HKPHGQSVDYLLIQLFGAPRIYERDA--RSFGLITEDPFLNFSTEIDTQWFRATDFTPSC 216
Query: 240 SIGCSTSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTTSEIVPLVKCRPGFN 299
SIG S + EI G + + F ++KE K L G + + +VP+V N
Sbjct: 217 SIGQSAALCLEIPYGRQLPNFHDKFAYFKEIKGKFTLVSGSTYSSNVNLVPVVTPPRTIN 276
Query: 300 LSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALM--VLQKLHKLKSICYDPVS 357
L + +LF++N LV + A D Q++ TA++ L+KL LK CY+P
Sbjct: 277 LPYTILFKINLLVQQGCLPGPALDISFYQMVDSQIYNTAVIDHALKKLLHLKECCYNPSK 336
Query: 358 FVKTQL--HVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKN 415
++ + + +N P+ + ++ ++ +R VTP K+Y GPE+ SN V++
Sbjct: 337 WLDEEYRKYFKLKNPPQPPILT----LNEGLVYVHRVQVTPCKVYFCGPEVNISNRVLRR 392
Query: 416 FAKYASDFMRVTFVEEDWSKLPANALS----TSIQRGIFSKPYRTKIYSRILTILQDGIV 471
+ Y +F+RV+FV+E+ K+ + LS +S++ G +TKI+ RIL++L+DGI
Sbjct: 393 YPDYIDNFLRVSFVDEELGKMYSTELSPRASSSLEDG------KTKIFKRILSVLRDGIT 446
Query: 472 IGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFS 531
IGDK +EFLA+S+SQLR N+ WMFA +E++A +R WMG F+ IR+V+K AAR+GQ F
Sbjct: 447 IGDKKFEFLAYSSSQLRENAAWMFAPKNELTAAKIRQWMGDFHNIRNVAKYAARLGQSFG 506
Query: 532 SSKQTLVVPVQDVEMIPDVEVTS-DGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQ 590
SS +TL V ++V++IPD+EV S G Y FSDGIGKI+ SFAR+VA+KCG+ HTPSAFQ
Sbjct: 507 SSTETLSVSRREVKVIPDIEVESGSGVNYVFSDGIGKIAASFARKVAKKCGIRHTPSAFQ 566
Query: 591 IRYGGYKGVIAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTL 650
IRY G+KGVI+VD S KLSLR SMLK+ES + L+V WS+ PCFLNR++I+LLSTL
Sbjct: 567 IRYAGFKGVISVDPTSSVKLSLRNSMLKYESTDTKLDVLSWSKYHPCFLNRQLITLLSTL 626
Query: 651 GVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYL 710
GV+D VFE+ QQ+ + L + + A L+ ++ ++ IL +M+L GY+P+ EP+L
Sbjct: 627 GVQDHVFESKQQELIDELDTIFSDPLKAQQALELMSPGENTKILKEMMLCGYKPDSEPFL 686
Query: 711 SMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQ 770
MML + E++L +L+ + RI++P GR ++GC DET L YG+VFV+ + ++L D+
Sbjct: 687 RMMLHTFRESKLMELRMKSRIFIPNGRAMMGCLDETRNLEYGEVFVQCS-AHQQLHD-DR 744
Query: 771 SFFHRV-DDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERP 829
F R+ ++ IV G V+V KNPCLHPGDVRVL AV L +DC++FPQKG RP
Sbjct: 745 VIFKRIKSNRHFIVTGTVVVAKNPCLHPGDVRVLTAVDVPSLHH--MIDCVVFPQKGSRP 802
Query: 830 HPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMI 889
HPNECSG DLDGDI+F+ WD DLIP + PMDYT S+++DHDVT+EE+ ++F +YM+
Sbjct: 803 HPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVPSQVLDHDVTMEEVQEYFANYMV 862
Query: 890 NDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPD 949
ND+LG I+ AH AD++P KA S+ C+ LA L S+AVDF KTG PA +P L+ KE+PD
Sbjct: 863 NDSLGIIANAHTAFADKEPKKAMSNPCIQLAKLFSIAVDFPKTGVPALIPANLRVKEYPD 922
Query: 950 FMEREDKPRYISFGVLGKLYRATLDS----IMQIRSNAIWSEKIAEASYDHDLEVDGFEA 1005
FM++ DK Y S VLGKL+R LDS I IRS ++ ++A YD D+EV+GFE
Sbjct: 923 FMDKADKVTYESENVLGKLFR-MLDSIGPNIKNIRSFN-YTPEMARQDYDPDMEVEGFEE 980
Query: 1006 FLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLS 1065
+L A HK Y+ + LM+Y+ TE E+++G + N + I+L+
Sbjct: 981 YLDDAIYHKNNYDMRLGNLMHYHKIKTEAELISGGSLTSSLSFTMKNE-----AESIILA 1035
Query: 1066 AKNLQNEAKEWFG--SSCKENEHPQL---ASAWYHVTYSPSYC------KERMALLSFPW 1114
K+L+ EA+ WF + H + ASAWY VTY +Y K LSFPW
Sbjct: 1036 VKSLRKEARGWFNEKADLHYGHHTNVYARASAWYFVTYHHTYWGWSDGRKNHGHFLSFPW 1095
Query: 1115 IVGDILLNIK--SVNSR 1129
V D L+ IK +N R
Sbjct: 1096 CVYDKLIRIKHRKINCR 1112
>gi|377347180|dbj|BAL63010.1| RNA-dependent RNA polymerase 1 [Cucumis sativus]
Length = 1115
Score = 760 bits (1963), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/1157 (38%), Positives = 672/1157 (58%), Gaps = 80/1157 (6%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKA 64
T+ + P + + + F+E G ++ A+ + +S+G GR + + F +
Sbjct: 4 TIQLFGFPSGVLQESVKTFVEGITGTGTIDAI------NTKRSKGGGRRVYAIIQFTDEE 57
Query: 65 QNLSL----NDKLVFNSQNLKISETHSDIVPRPVKAQHRVEDGVLHVGVMCKEERLRVLQ 120
S+ ++L + + LK E DI+P P+ + + LH+G +E VL
Sbjct: 58 GAKSIISKATERLCYGTSYLKAREMKHDILPDPLVFDYNFKALRLHLGCQISKESFSVLW 117
Query: 121 TFEGVRGWLLPDRRRLEFWV-WPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGF 179
T V D R+L F++ +P+ + + + + +E++ + V
Sbjct: 118 TESNVSVDFGFDVRKLYFFISYPRVD------------------YMLVLRYENIWQ-VEL 158
Query: 180 SLDEGATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTK 239
G +V+ +L +L P+IY++ + D + + D W R TDF+ +
Sbjct: 159 HKPHGQSVDYLLIQLFGAPRIYERDA--RSFGLITEDPFLNFSTEIDTQWFRATDFTPSC 216
Query: 240 SIGCSTSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTTSEIVPLVKCRPGFN 299
SIG S + EI G + + F ++KE K L G + + +VP+V N
Sbjct: 217 SIGQSAALCLEILYGRQLPNFHDKFAYFKEIKGKFTLVSGSTYSSNVNLVPVVTPPRTIN 276
Query: 300 LSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALM--VLQKLHKLKSICYDPVS 357
L + +LF++N LV + A D Q++ TA++ L+KL LK CY+P
Sbjct: 277 LPYTILFKINLLVQQGCLPGPALDISFYQMVDSQIYNTAVIDHALKKLLHLKECCYNPSK 336
Query: 358 FVKTQL--HVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKN 415
++ + + +N P+ + ++ ++ +R VTP K+Y GPE+ SN V++
Sbjct: 337 WLDEEYRKYFKLKNPPQPPILT----LNEGLVYVHRVQVTPCKVYFCGPEVNISNRVLRR 392
Query: 416 FAKYASDFMRVTFVEEDWSKLPANALS----TSIQRGIFSKPYRTKIYSRILTILQDGIV 471
+ Y +F+RV+FV+E+ K+ + LS +S++ G +TKI RIL++L+DGI
Sbjct: 393 YPDYIDNFLRVSFVDEELGKMYSTELSPRASSSLEDG------KTKILKRILSVLRDGIT 446
Query: 472 IGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFS 531
IGDK +EFLA+S+SQLR N+ WMFA +E++A +R WMG F+ IR+V+K AAR+GQ F
Sbjct: 447 IGDKKFEFLAYSSSQLRENAAWMFAPKNELTAAKIRQWMGDFHNIRNVAKYAARLGQPFG 506
Query: 532 SSKQTLVVPVQDVEMIPDVEVTS-DGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQ 590
SS +TL V ++V++IPD+EV S G Y FSDGIGKI+ SFAR+VA+KCG+ HTPSAFQ
Sbjct: 507 SSTETLSVSRREVKVIPDIEVESGSGVNYVFSDGIGKIAASFARKVAKKCGIRHTPSAFQ 566
Query: 591 IRYGGYKGVIAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTL 650
IRY G+KGVI+VD S KLSLR SMLK+ES + L+V WS+ PCFLNR++I+LLSTL
Sbjct: 567 IRYAGFKGVISVDPTSSVKLSLRNSMLKYESTDTKLDVLSWSKYHPCFLNRQLITLLSTL 626
Query: 651 GVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYL 710
GV+D VFE+ QQ+ + L + + A L+ ++ ++ IL +M+L GY+P+ EP+L
Sbjct: 627 GVQDHVFESKQQELIDELDTIFSDPLKAQQALELMSPGENTKILKEMMLCGYKPDSEPFL 686
Query: 711 SMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQ 770
MML + E++L +L+ + RI++P GR ++GC DET L YG+VF + + ++L D+
Sbjct: 687 RMMLHTFRESKLMELRMKSRIFIPNGRAMMGCLDETRNLEYGEVFWQCS-AHQQLHD-DR 744
Query: 771 SFFHRV-DDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERP 829
F R+ ++ IV G V+V KNPCLHPGDVRVL AV L +DC++FPQKG RP
Sbjct: 745 VIFKRIKSNRHFIVTGTVVVAKNPCLHPGDVRVLTAVDVPSLHH--MIDCVVFPQKGSRP 802
Query: 830 HPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMI 889
HPNECSG DLDGDI+F+ WD DLIP + PMDYT S+++DHDVT+EE+ ++F +YM+
Sbjct: 803 HPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVPSQVLDHDVTMEEVQEYFANYMV 862
Query: 890 NDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPD 949
ND+LG I+ AH AD++P KA S+ C+ LA L S+AVDF KTG PA +P L+ KE+PD
Sbjct: 863 NDSLGIIANAHTAFADKEPKKAMSNPCIQLAKLFSIAVDFPKTGVPALIPANLRVKEYPD 922
Query: 950 FMEREDKPRYISFGVLGKLYRATLDS----IMQIRSNAIWSEKIAEASYDHDLEVDGFEA 1005
FM++ DK Y S VLGKL+R LDS I IRS ++ ++A YD D+EV+GFE
Sbjct: 923 FMDKADKVTYESENVLGKLFR-MLDSIGPNIKNIRSFN-YTPEMARQDYDPDMEVEGFEE 980
Query: 1006 FLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLS 1065
+L A HK Y+ + LM+Y+ TE E+++G + N + I+L+
Sbjct: 981 YLDDAIYHKNNYDMRLGNLMHYHKIKTEAELISGGSLTSSLSFTMKNE-----AESIILA 1035
Query: 1066 AKNLQNEAKEWFG--SSCKENEHPQL---ASAWYHVTYSPSYC------KERMALLSFPW 1114
K+L+ EA+ WF + H + ASAWY VTY +Y K LSFPW
Sbjct: 1036 VKSLRKEARGWFNEKADLHYGHHTNVYARASAWYFVTYHHTYWGWSDGRKNHGHFLSFPW 1095
Query: 1115 IVGDILLNIK--SVNSR 1129
V D L+ IK +N R
Sbjct: 1096 CVYDKLIRIKHRKINCR 1112
>gi|113205326|gb|AAT38754.2| RNA-directed RNA polymerase, putative [Solanum demissum]
Length = 1021
Score = 750 bits (1936), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/999 (42%), Positives = 594/999 (59%), Gaps = 94/999 (9%)
Query: 206 GPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKSIGCSTSFFWEIKNGLLASDISNIFP 265
P + + + Y KE D WVRTTDF+ + IG S+S + + G+ + F
Sbjct: 21 APRIYKRLENSCYSFFKETPDDQWVRTTDFAPS-WIGLSSSLCLQFRRGVHLPNFQESFF 79
Query: 266 FYKEDKTDLILEEGEEFCTT--SEIVPLVKCRPGFNLSHEVLFQLNSLVHNQKVSLVAAD 323
Y E + ++ L+ G F + S +VP V+ G + +++LF+++SLV + + + +
Sbjct: 80 HYAERENNITLQTGFTFFISQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPSLN 139
Query: 324 AELIQILSGLSMETALM--VLQKLHKLKSICYDPVSFVKTQL--HVLGRNCKSIPLSSHK 379
+++ A + L+KL+ LK CYDPV ++ Q ++ GR P S
Sbjct: 140 VYFFRLVDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQ----PPKSPS 195
Query: 380 RLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPAN 439
+D ++ R LVTP K+Y GPE+ SN V++N+++ +F+RV+FV+E+W KL +
Sbjct: 196 ITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYST 255
Query: 440 AL--STSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFAS 497
L S GI RT IY RIL+ L+ G VIGDK +EFLAFS+SQLR+NSVWMFAS
Sbjct: 256 ELLPKASTGNGI-----RTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFAS 310
Query: 498 NDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGN 557
++A D+R WMG F++I++V+K AAR+GQ F SSK+TL V ++E+IPDV+V G
Sbjct: 311 RPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETLSVLRHEIEVIPDVKV--HGT 368
Query: 558 TYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSFRKLSLRRSML 617
+Y FSDGIGKIS FAR+VA KCGL +TPSAFQIRYGGYKGV+AVD S KL+LR+SM
Sbjct: 369 SYVFSDGIGKISADFARRVASKCGLQYTPSAFQIRYGGYKGVVAVDPYSSMKLTLRKSMS 428
Query: 618 KFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREA 677
K+ES N L+V WS+ PCFLNR++I+LLSTLGV+D++ E Q++ + L +L +
Sbjct: 429 KYESDNNKLDVLGWSKYQPCFLNRQLITLLSTLGVRDDILEQKQKEAVDQLDAILHDSLK 488
Query: 678 ALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGR 737
A + L+ ++ ++ NIL ML GY P+ EP+LSMML + ++L DL+++ RI++P GR
Sbjct: 489 AQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPNGR 548
Query: 738 LLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFH--RVDDKTSIVKGKVLVTKNPCL 795
++GC DE+ L YGQVFV+ T S+D F+ R + I+KG V+V KNPCL
Sbjct: 549 AMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCL 608
Query: 796 HPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGER--------------------------- 828
HPGD+RVL AV L VDC++FPQKG+R
Sbjct: 609 HPGDIRVLRAVDVPALHH--MVDCVVFPQKGKRLGMYFNCFPTSEVEVKSAYTLPSSDPT 666
Query: 829 ------PHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLE---- 878
PHPNECSG DLDGDI+F+ WD D+IP PM+Y S +DHDVT+E
Sbjct: 667 LWYLTGPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQPMEYPPAPSIQLDHDVTIERGDW 726
Query: 879 ---------------------EIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCL 917
E+ ++F +Y++ND+LG IS AH+V ADR+PD A S C
Sbjct: 727 PVCATTVQVLRNSFSPVCLLQEVEEYFTNYIVNDSLGIISNAHVVFADREPDMAMSDPCK 786
Query: 918 HLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMER-EDKPRYISFGVLGKLYRATLDSI 976
LA L S+AVDF KTG PAE+P L+PKE+PDFM++ DK YIS V+GKL+R D
Sbjct: 787 KLAELCSIAVDFPKTGVPAEIPSQLRPKEYPDFMDKPPDKTTYISERVIGKLFRKVKDKA 846
Query: 977 MQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEI 1036
Q S AI++ +A SYD DLEVDGFE ++ A +K Y+ ++ LM+YYG TE EI
Sbjct: 847 PQASSTAIFTRDVARRSYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEI 906
Query: 1037 LTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSCKENEHPQLASAWYHV 1096
L+G + + R + I ++ + L+ EA+ WF ++ ASAWYHV
Sbjct: 907 LSGGIMKTSKTFDRRKD-----AEAISIAVRALRKEARTWFKRRNDIDDMLPKASAWYHV 961
Query: 1097 TYSPSY--CK----ERMALLSFPWIVGDILLNIKSVNSR 1129
TY P+Y C +R +SFPW V D L+ IK +R
Sbjct: 962 TYHPTYWGCYNQGLKRDHFISFPWCVYDQLIQIKKEKAR 1000
>gi|113205194|gb|AAT39936.2| RNA-directed RNA polymerase-like, putative [Solanum demissum]
Length = 1137
Score = 748 bits (1932), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/963 (43%), Positives = 590/963 (61%), Gaps = 59/963 (6%)
Query: 184 GATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKSIGC 243
G +L +L P+IY+++ + Y KE D WVRTTDF+ + IG
Sbjct: 196 GQNAQFLLIQLFGAPRIYKRLE---------NSCYSFFKETPDDQWVRTTDFTPS-WIGL 245
Query: 244 STSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTT--SEIVPLVKCRPGFNLS 301
S+S + + G+ + F Y E + ++ L+ G F + S +VP V+ G +
Sbjct: 246 SSSLCLQFRRGVHLPNFQESFFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIP 305
Query: 302 HEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALM--VLQKLHKLKSICYDPVSFV 359
+++LF+++SLV + + A + +++ A + L+KL+ LK CYDPV ++
Sbjct: 306 YKILFKISSLVQHGCIPGPALNVYFFRLVDPQRRNVACIEQALEKLYYLKECCYDPVRWL 365
Query: 360 KTQL--HVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFA 417
Q + GR P S +D ++ R LVTP K+Y GPE+ SN V++N++
Sbjct: 366 TEQYDGYFKGRQ----PPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYS 421
Query: 418 KYASDFMRVTFVEEDWSKLPANAL--STSIQRGIFSKPYRTKIYSRILTILQDGIVIGDK 475
+ +F+RV+FV+E+W KL + L S GI RT IY RIL+ L+ G VIGDK
Sbjct: 422 EDIDNFLRVSFVDEEWEKLYSTELLPKASTGNGI-----RTNIYERILSTLRKGFVIGDK 476
Query: 476 HYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQ 535
+EFLAFS+SQLR+NSVWMFAS ++A D+R WMG F++I++V+K AAR GQ F SS++
Sbjct: 477 KFEFLAFSSSQLRDNSVWMFASRRGLTANDIRSWMGDFSQIKNVAKYAARFGQSFGSSRE 536
Query: 536 TLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGG 595
TL V ++E+IPDV+V G +Y FSDGIGKIS FAR+VA CGL +TPSAFQIRYGG
Sbjct: 537 TLSVLRHEIEVIPDVKV--HGTSYVFSDGIGKISADFARKVASNCGLQYTPSAFQIRYGG 594
Query: 596 YKGVIAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDE 655
YKGV+AVD S KLSLR+SM K+ES N L+V +WS+ PC+LNR++++LLSTLGVKD+
Sbjct: 595 YKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLEWSKYQPCYLNRQLVTLLSTLGVKDD 654
Query: 656 VFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLL 715
V E Q++ + L +L + A + L+ ++ ++ NIL ML GY P+ EP+LSMML
Sbjct: 655 VLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQ 714
Query: 716 SHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFH- 774
+ ++L DL+++ RI++P GR ++GC DE+ L YGQVFV+ T S+D F+
Sbjct: 715 TFRASKLLDLRTKSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNN 774
Query: 775 -RVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNE 833
R + I+KG V+V KNPCLHPGD+RVL AV L VDC++FPQKG+RPHPNE
Sbjct: 775 SRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHH--MVDCVVFPQKGKRPHPNE 832
Query: 834 CSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTL 893
CSG DLDGDI+F+ WD D+IP M++ S +DHDVT+EE+ ++F +Y++ND L
Sbjct: 833 CSGSDLDGDIYFVCWDQDMIPPRQVQAMEFPPPPSIQLDHDVTIEEVEEYFTNYIVNDGL 892
Query: 894 GAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMER 953
G I+ AH+V ADR+PD A +DF KTG PAE+P L+PKE+PDFM++
Sbjct: 893 GIIANAHVVFADREPDMA--------------MMDFPKTGVPAEIPSQLRPKEYPDFMDK 938
Query: 954 -EDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAES 1012
DK YIS V+GKL+R D Q S AI++ A SYD DLEVDGFE ++ A
Sbjct: 939 PPDKTTYISERVIGKLFRKVKDKAPQASSIAIFTRDDARRSYDTDLEVDGFEDYIDEAFD 998
Query: 1013 HKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNE 1072
+K Y+ ++ LM+YYG TE EIL+G + + R + I ++ + L+ E
Sbjct: 999 YKTEYDNKLGNLMDYYGIKTEAEILSGGIMKTSKTFDRRKD-----AEAISIAVRALRKE 1053
Query: 1073 AKEWFGSSCKENEHPQLASAWYHVTYSPSY--CK----ERMALLSFPWIVGDILLNIKSV 1126
A+ WF ++ ASAWYHVTY P+Y C +R +SFPW V D L+ IK
Sbjct: 1054 ARTWFKRRNDIDDMLPKASAWYHVTYHPTYWGCYNQGLKRDHFISFPWCVYDQLIQIKKE 1113
Query: 1127 NSR 1129
+R
Sbjct: 1114 KAR 1116
Score = 42.4 bits (98), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 6/122 (4%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKA 64
T+ V P+ A+ + FLE G +V ALE+ +S SR +VQF K
Sbjct: 74 TIQVYGFPRLLSAEVVKSFLEKHTGYGTVCALEV--KQSKGGSRAFAKVQFVDNISADKI 131
Query: 65 QNLSLNDKLVFNSQNLKISETHSDIVPRPVKAQHRVEDGV-LHVGVMCKEERLRVLQTFE 123
NL+ + +L F S LK E +DIV H DG+ L+ G +++ VL + E
Sbjct: 132 INLA-SKRLYFGSSYLKAWELETDIVQLWAYVDHM--DGITLNFGCQISDDKFAVLGSTE 188
Query: 124 GV 125
V
Sbjct: 189 VV 190
>gi|308080205|ref|NP_001183933.1| putative RNA-dependent RNA polymerase [Zea mays]
gi|254838301|gb|ACT83377.1| putative RNA-dependent RNA polymerase [Zea mays]
Length = 1108
Score = 748 bits (1932), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 447/1139 (39%), Positives = 654/1139 (57%), Gaps = 62/1139 (5%)
Query: 1 MVLATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRS-NWKSRGIGRVQFTSLD 59
MV T+ V T A+ + LFLE G ++ AL++ R+ + SR QF S +
Sbjct: 1 MVGRTIQVQGFALTDSAEPVKLFLERIAGAGTICALKLRHPRNISANSRAFAIAQFQSQE 60
Query: 60 FKSKAQNLSLNDKLVFNSQNLKISETHSDIVPRPVKAQHRVEDGVLHVGVMCKEERLRVL 119
S +N + L L+ DIVPRP +ED VLH+G + KE L L
Sbjct: 61 SASLVENATQRLVLKIGRFYLRTRPADRDIVPRPRIPMFSLEDIVLHLGCLVKENILSAL 120
Query: 120 QTFEGVRGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLE-TVG 178
V D +++ F++ + + K FK+E+ +E + E +
Sbjct: 121 FRASNVSVQFGFDMKKIYFYL----SYNFTK-------------FKLELSYESIWEMQLH 163
Query: 179 FSLDEGATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVT 238
+ +L +++ PKIY+ + G F ++ +++ D W RT DF+ +
Sbjct: 164 RPPAYRSRTQFLLIQVQAAPKIYKLLPG-RPGLMFEDPFFNWFRDEKDEQWTRTIDFTPS 222
Query: 239 KSIGCSTSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTTSEIVPLVKCRPGF 298
SIG S+ + W + I + F +YKE D G + S +VP+VK
Sbjct: 223 ASIGQSSIYVWRCQQQCELPRIGDYFVYYKEQNLDFECRNGYSYSCGSSLVPIVKSPDYI 282
Query: 299 NLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGL--SMETALMVLQKLHKLKSICYDPV 356
+ +E+LF++N LV N +S D + +S ++ L K+ LKS C +P
Sbjct: 283 EVPYEILFKINHLVQNGTLSGSTVDHSFFRHVSPKFEPIDHIKRALLKMTYLKSTCLNPT 342
Query: 357 SFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNF 416
++ Q + ++ + S+ L D ++ +R VTP K+Y GPE+ SN VV++F
Sbjct: 343 DWLSVQYSRIRKSRHASQKLSNISL-DDGLVYVHRVQVTPAKVYFYGPEINVSNRVVRHF 401
Query: 417 AKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKH 476
+ +F+R++FV+ED KL + LS G + RT +Y+R+L++L +GI IGDKH
Sbjct: 402 SADIDNFLRISFVDEDCEKLRSADLSPRSTSG--NDARRTALYNRVLSVLSNGINIGDKH 459
Query: 477 YEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQT 536
+EFLAFS+SQLR+NS WMFAS ++A D+R WMG F IR+V+K AA +GQ FSSS +T
Sbjct: 460 FEFLAFSSSQLRDNSAWMFASRQGLTASDIRKWMGDFRDIRNVAKYAAILGQSFSSSTET 519
Query: 537 LVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSH-TPSAFQIRYGG 595
L V +VE IPD+ ++G Y FSDG+GKIS +FA +VA KC L PS FQIRYGG
Sbjct: 520 LKVHKSEVERIPDI---TNGTKYIFSDGVGKISANFAVEVAMKCKLKRFAPSVFQIRYGG 576
Query: 596 YKGVIAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDE 655
YKGV+AVD S KLSLR+SM KF+S N L+V +S+ PCFLNR++I+LLSTLGV D
Sbjct: 577 YKGVVAVDTRSNHKLSLRKSMSKFQSENITLDVLAYSKYQPCFLNRQLITLLSTLGVSDN 636
Query: 656 VFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLL 715
VFE Q++ L L +M+ +AA + ++ + + N++ ++L GY+P+ EPYLSM+L
Sbjct: 637 VFELKQKEALRQLNRMVTEPQAAREAVELMPMGEVTNVVKELLSCGYQPDHEPYLSMLLQ 696
Query: 716 SHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHR 775
+ ++L +LK++ RI++ +GR ++GC DET L YGQVFV+ + + +
Sbjct: 697 TFRASKLLELKTKSRIFITQGRAMMGCLDETCTLKYGQVFVQASYSAD------------ 744
Query: 776 VDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECS 835
D + +V GKV+V KNPCLHPGD+RVL+AV L DC++FPQ+G RPHPNECS
Sbjct: 745 -DHRKVVVTGKVVVAKNPCLHPGDIRVLQAVDVPALHH--LFDCVVFPQQGPRPHPNECS 801
Query: 836 GGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGA 895
G DLDGDI+F+SWD LIP PMDYT + +DHDVT+EEI ++F +Y++N++LG
Sbjct: 802 GSDLDGDIYFVSWDPHLIPSRLVDPMDYTPASAETLDHDVTIEEIQEYFTNYIVNESLGI 861
Query: 896 ISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMERED 955
I+ AH+V D++ KA S C+ LA L S+AVDF KTG PA +P L KE+PDFME+ D
Sbjct: 862 IANAHVVFTDQERMKAESPPCVQLAKLFSIAVDFPKTGVPALIPHELHVKEYPDFMEKLD 921
Query: 956 KPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKE 1015
K Y S GV+GKLYR I+ ++ ++A SYD DL VDG+E ++ A KE
Sbjct: 922 KVTYESKGVIGKLYREIKKHTPHIKH---FTREVARRSYDTDLIVDGYEDYITEAIEFKE 978
Query: 1016 MYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKE 1075
Y+ + LM++YG +E EI++G + A + + D I ++ ++L+ EA+
Sbjct: 979 EYDFRLGNLMDHYGIKSEAEIISGCILKMAKNFTKSSD-----ADAIRMAVRSLRKEARS 1033
Query: 1076 WFGS-SCKENEHPQL---ASAWYHVTYSPSYCK------ERMALLSFPWIVGDILLNIK 1124
WF S E+ + ASAWYHVTY Y +R L+SFPW V D L+ IK
Sbjct: 1034 WFNEMSTGEDGQDAMEAKASAWYHVTYHQQYWGSYNEGYDRPHLISFPWCVYDKLVAIK 1092
>gi|302819337|ref|XP_002991339.1| hypothetical protein SELMODRAFT_448382 [Selaginella moellendorffii]
gi|300140919|gb|EFJ07637.1| hypothetical protein SELMODRAFT_448382 [Selaginella moellendorffii]
Length = 1134
Score = 741 bits (1914), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 454/1167 (38%), Positives = 661/1167 (56%), Gaps = 79/1167 (6%)
Query: 6 VWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQ 65
+V N+ + A+A +L+ LES G+ +V + I T +NW SRG VQF + + A
Sbjct: 3 AYVGNVSKCAVASELVECLESVCGRGTVVSCSIDTAHANWMSRGYAFVQFATAEASQLAS 62
Query: 66 NLSLNDKLVFNSQNLKISETHSDIVPRPVKAQHRVEDGVLHVGVMCKEERLRVLQTFEGV 125
L+ + L+F + L+I + H + P++ RVE VL +G E + L + GV
Sbjct: 63 QLAAENALLFYGRALRI-QAHKGVTHGPIRGDERVEGIVLTMGFARGESGIDCLWSCSGV 121
Query: 126 RGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFSLDEGA 185
EF G Q + Q D D +K+E+LF ++ F E +
Sbjct: 122 AA---------EFCF-----GSCQLNLL-LQHDGVD--YKLELLFRNLRFVDAFV--ETS 162
Query: 186 TVNGILFKLKYGPKIYQKVSGPH-----------------VASKFPSDRYHICKEDFDFF 228
+ +L +L P ++Q + P A + S Y K +
Sbjct: 163 QASHLLLQLFRPPLVFQGLPSPSEQGNPVLDTPLAILRHFKAVRANSYNYKYSKFAKEPT 222
Query: 229 WVRTTDFSVTKSIGCSTSFFWEIKNGL---LASDISNIFPFYKEDKTD--LILEEGEEFC 283
W R+TDF+ K+I S + E + L A IS Y D L L GE +
Sbjct: 223 WTRSTDFTPGKAISQSLVYCLEFPSDLSDEQALKISKSLSGYDTSSMDRALTLVAGESYA 282
Query: 284 TTSEIVPLVKCRP--GFNLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMV 341
E+ P++ G L ++++++N LV + +S + EL +L G + L
Sbjct: 283 LQQELSPILSITEDDGAPLPFDIVYKINFLVQSGYMSPASVTRELFTLLQGFPEKLCLSA 342
Query: 342 LQKL-HKLKSICYDPVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIY 400
L KL ++ D S +++ L R + + D R +VTP K+Y
Sbjct: 343 LDKLVSPAGNVSLDAFSTIESYLKCHHRRSELVE-------PDGGYTYVKRLVVTPAKVY 395
Query: 401 CLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANAL----STSIQRGIFSKPYRT 456
C GPELE SN V + + +A++F+RV+FV+E++ L A+A+ S+Q G+ +P +
Sbjct: 396 CTGPELERSNGVTRRYKDFAANFLRVSFVDENFETLYADAVRLPTKVSVQIGLLPEP--S 453
Query: 457 KIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKI 516
+Y R+L +++DG+ IG K ++FL FSASQLR +S+WMFA V+AE +R WMG F
Sbjct: 454 SVYHRVLAVVRDGVTIGGKKFKFLGFSASQLREHSLWMFAGAGSVTAESIRAWMGDFGGF 513
Query: 517 RSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQV 576
+++KCAAR+GQ FSSS+ +L V ++ + D+ G YCFSDGIGKIS +FA V
Sbjct: 514 TNIAKCAARIGQSFSSSRSSLEVLEDELSSVEDIYC---GTRYCFSDGIGKISKAFATSV 570
Query: 577 AQKCGLSHTPSAFQIRYGGYKGVIAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMP 636
A+ C + PSA QIRY GYKGV+AVD KLSLR SMLKF S L+V K S+ P
Sbjct: 571 ARACNMPVVPSALQIRYAGYKGVVAVDPTCSTKLSLRPSMLKFPSERTGLDVLKASQYAP 630
Query: 637 CFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLN-GVDSKNILV 695
+LNR+ I L++TLGV DEVFE MQ ++L +L +ML + + A++VL+ + G + +I+V
Sbjct: 631 YYLNRQSIILMTTLGVPDEVFERMQNEELKILDEMLRDPQTAIEVLRSSSSGGEVHSIMV 690
Query: 696 KMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVF 755
ML GY+P EP+L +L + QL L+++ RIYVPKGR L+GC DETG+L+YGQVF
Sbjct: 691 AMLQAGYKPAHEPFLRRLLDNFRSLQLYLLRTKSRIYVPKGRCLLGCLDETGVLDYGQVF 750
Query: 756 VRVTMT----REELESKDQSFFHR---VDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYE 808
V+V+ T R + D + R + +V GKV+VTKNPCLHPGD+ VLEAV
Sbjct: 751 VQVSPTPGTRRVVDDGLDDARPRRGVTRSESACVVLGKVVVTKNPCLHPGDLLVLEAVDV 810
Query: 809 MKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRS 868
L +DC++FPQ+G+RPHPNECSG DLDGD++F++WD L+P T PMDY +
Sbjct: 811 PGLHH--MIDCVVFPQRGKRPHPNECSGSDLDGDLYFVTWDKSLVPPVTHEPMDYEPGTA 868
Query: 869 RIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVD 928
+DH VTLEEI +FFVD M++D+LG IS AHLVHAD++ ++A+ KCL LA L S AVD
Sbjct: 869 AKLDHSVTLEEIQQFFVDSMVHDSLGVISNAHLVHADKELERAKDPKCLELARLASTAVD 928
Query: 929 FAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDS--IMQIRSNAI-W 985
FAKTG PA +P+ L+P+++PDFME E K Y S VLGKLYR+ + I RS+A+
Sbjct: 929 FAKTGIPAVIPVDLRPRDYPDFMENEFKSTYTSQSVLGKLYRSLQSNGRIFSQRSSAVAA 988
Query: 986 SEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRA 1045
S K + +D L VDG+E + A KE+Y+ ++ L+ +Y TE EI+TGN+
Sbjct: 989 SPKEMDEEFDRSLIVDGYEQHVAEARLLKELYDTKLERLLRHY-EITEAEIVTGNVLCLG 1047
Query: 1046 SYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSCKENEHPQLASAWYHVTYSPSYCK- 1104
++ R D +DRI + K+L EA WF + E++ + A AWYHVTY P + K
Sbjct: 1048 KANEKTKR--NDTRDRIACAMKSLAKEAGRWFEAGLNEHQLAK-ACAWYHVTYHPEFRKG 1104
Query: 1105 ERMALLSFPWIVGDILLNIKSVNSRKA 1131
+ LSFPW+V ++ + S+ K+
Sbjct: 1105 SNVESLSFPWVVPAVVEKLVSLKRAKS 1131
>gi|4138343|emb|CAA09896.1| RNA-directed RNA polymerase [Petunia x hybrida]
Length = 775
Score = 739 bits (1909), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/793 (49%), Positives = 524/793 (66%), Gaps = 37/793 (4%)
Query: 341 VLQKLHKLKSICYDPVSFVKTQL-HVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKI 399
L+KL+ LK CYDPV ++ Q L R + +P S L D +M R LVTP K+
Sbjct: 5 ALEKLYNLKECCYDPVRWLTKQYDEYLKR--RQLPKSPSITL-DDGLMYVRRVLVTPCKV 61
Query: 400 YCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKL-PANALSTSIQRGIFSKPYRTKI 458
Y LGPE+ SN V++N+++ +F+RV+FV+E+W K+ + L + + GI RT I
Sbjct: 62 YFLGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKIFSMDLLPRANRNGI-----RTDI 116
Query: 459 YSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRS 518
Y RIL+ LQ+G+VIG K +EFLAFS+SQLR+NSVWMFAS ++A D+R WMG F +IR+
Sbjct: 117 YERILSTLQNGLVIGAKKFEFLAFSSSQLRDNSVWMFASRPGLTAYDIRTWMGDFQQIRN 176
Query: 519 VSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQ 578
V+K AAR+GQ F SS++TL V +++ IPDVEV G Y FSDGIGKIS FA +VA+
Sbjct: 177 VAKYAARLGQSFGSSRETLSVGRHEIKYIPDVEV--HGTNYVFSDGIGKISADFAHRVAK 234
Query: 579 KCGLSHTPSAFQIRYGGYKGVIAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCF 638
KCGL HTPSAFQIRYGGYKGV+AVD S KLSLR+SMLK+ES N L+V WS+ PC+
Sbjct: 235 KCGLQHTPSAFQIRYGGYKGVVAVDPYSPMKLSLRKSMLKYESNNTKLDVLGWSKYQPCY 294
Query: 639 LNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKML 698
LNR++++L+STLGVKDEVF+ Q + + L +L + A + L ++ ++ NIL +ML
Sbjct: 295 LNRQLVTLMSTLGVKDEVFKRKQNEAVAQLDAILHDSLKAQEALDLMSPGENTNILKEML 354
Query: 699 LQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRV 758
GY P+ EP+LSMML + ++L DL++R RI++PKGR ++GC DE+ L YGQVFV+
Sbjct: 355 NCGYLPDAEPFLSMMLQTFRASKLLDLRTRTRIFIPKGRSMMGCLDESRTLEYGQVFVQF 414
Query: 759 TMT--REELESKDQSFFHRVDDKTS-----IVKGKVLVTKNPCLHPGDVRVLEAVYEMKL 811
T R+ E H +D S I+KG V+V KNPCLHPGD+RVL+AV L
Sbjct: 415 TGAGGRQFYEES-----HHFNDSGSANYNFILKGNVVVAKNPCLHPGDIRVLKAVDVPAL 469
Query: 812 EEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIM 871
VDC++FPQKG+RPHPNECSG DLDGDI+F+ WD DLIP PMDYT S +
Sbjct: 470 HH--MVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPDLIPPRQVQPMDYTPAPSIQL 527
Query: 872 DHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAK 931
DHDVT+EE+ ++F +YM+ND LG I+ AH+V ADR+P+ A S C+ LA L S+AVDF K
Sbjct: 528 DHDVTIEEVEEYFTNYMVNDGLGVIANAHVVFADREPNMAMSDPCIELAQLFSIAVDFPK 587
Query: 932 TGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAE 991
TG PAE+P L+PKE+PDFME+ DK Y S V+GKL+R D Q S ++ +A
Sbjct: 588 TGVPAEIPSQLRPKEYPDFMEKPDKTTYHSEKVIGKLFREVKDKTTQASSITTFTRDVAR 647
Query: 992 ASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRD 1051
SYD DLEVDGFE ++ A +K Y++++ LM+YYG TE E L+G + + D
Sbjct: 648 RSYDTDLEVDGFEDYIDEAFDYKSEYDKKLGNLMDYYGIKTEAETLSGGIMKASKTF--D 705
Query: 1052 NRRYGDMKDRILLSAKNLQNEAKEWFGSSCKENEHPQLASAWYHVTYSPSYCK------E 1105
RR + I ++ ++L+ EA+ WF ++ ASAWYHV Y P+Y +
Sbjct: 706 RRRDAEA---IGVAVRSLRKEARTWFKRRSDIDDLLAKASAWYHVAYHPTYWGCYNEGLK 762
Query: 1106 RMALLSFPWIVGD 1118
R +SFPW V D
Sbjct: 763 RDHFISFPWCVYD 775
>gi|307135834|gb|ADN33705.1| RNA-dependent RNA polymerase [Cucumis melo subsp. melo]
Length = 1137
Score = 734 bits (1895), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 442/1152 (38%), Positives = 655/1152 (56%), Gaps = 111/1152 (9%)
Query: 23 FLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLD--FKSK-------AQNLSLNDKL 73
FLE+ G +V + I + + + +FTS+ FKSK A+ + KL
Sbjct: 22 FLENHTGDGTVSTVRISKPKDD-------KTRFTSVTVRFKSKLAAEYIVAKATTEEKKL 74
Query: 74 VFNSQNLKISETHSDIVPRPVKAQHRVEDGVLHVGVMCKEERLRVLQTFEGVRGWLLPDR 133
F S LK E + + R+ED +G M ++++RV+
Sbjct: 75 WFESSYLKAREVEKKATSGGPEME-RMEDVKGQLGSMISKDKMRVI-------------- 119
Query: 134 RRLEFWVWPKHNGEWQKGIQEC----QSDSSDCCFKVEILFEDVLETVGFSLDEGATVNG 189
W K N E+ G+++ + D +K+E+ FE++L +V F
Sbjct: 120 -----WEGEKWNVEFGNGVRKLWFYLSYEVDD--YKMELCFENIL-SVEFRCPLNQPSKF 171
Query: 190 ILFKLKY---------------------GPKIYQKVSGPHVASKFPSDRYHICKEDFDFF 228
L ++ P+I++K + + + E F
Sbjct: 172 FLIQVSSFFLSFFSFFLSFLSLLKLQCRAPRIFRKTPSSSSSPLYSN-------ESNSFR 224
Query: 229 WVRTTDFSVTKSIGCSTSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTTSEI 288
W+R DF+ + IG S + + YK IL +G F + S +
Sbjct: 225 WIRDVDFTPSSCIGQSFTLCLQFSPSHHLPPFFQTLVGYKVTYDPFILRKGSSFVSNSNL 284
Query: 289 VPLVKCRPGFNLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALM--VLQKLH 346
VP++ F++S+++LF++N+L+ +S D E +++ + L+KL
Sbjct: 285 VPIITPPQAFDISYKILFKINALLQRGYLSGPTLDDEFFRLVDSSRFHPDYIEHALEKLF 344
Query: 347 KLKSICYDPVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPEL 406
LK CY P ++K Q ++ +P + L D ++ +R +TP+K+Y GPE
Sbjct: 345 NLKECCYKPQKWLKDQ-YLSYYVSNQLPWKPNVSL-DDGLVYVHRVQITPLKVYFCGPEA 402
Query: 407 ETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTIL 466
SN VV+ F +F+RV+FV+E+ KL +++ + + RT++Y R++++L
Sbjct: 403 NLSNRVVRRFIDDIDNFLRVSFVDEELDKL--HSIDLAPRSSSPENNTRTRVYDRVVSVL 460
Query: 467 QDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARM 526
++GIVIGDK +EFLAFSASQLR NS WMFAS +SA D+R WMG F +IR+V+K AAR+
Sbjct: 461 KNGIVIGDKKFEFLAFSASQLRENSFWMFASRKGLSAADIREWMGDFRQIRNVAKYAARL 520
Query: 527 GQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLS-HT 585
GQ F SS++TL V ++E+IPDVEV YCFSDGIGKIS + A++VA+KCGL+ HT
Sbjct: 521 GQSFGSSRKTLCVKEHEIEVIPDVEVERKNIMYCFSDGIGKISKTLAKKVAKKCGLTGHT 580
Query: 586 PSAFQIRYGGYKGVIAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIIS 645
PSAFQIRY GYKGV+A+D S +KLSLR+SMLK+ S + L+V WS+ PCFLNR++I+
Sbjct: 581 PSAFQIRYAGYKGVVAIDPTSEKKLSLRKSMLKYMSLDTQLDVLLWSKYQPCFLNRQVIN 640
Query: 646 LLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPN 705
LLSTLG+ D+VF Q++ + L +L + AL+VL+ ++ + +IL K LL Y PN
Sbjct: 641 LLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRALEVLELMSPGEMTSIL-KELLSFYMPN 699
Query: 706 VEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREEL 765
EP+L+MML + N+L DLK++ RI+VP+GR ++GC DET L YGQVFV ++
Sbjct: 700 EEPFLNMMLWTFRANKLLDLKTKSRIFVPRGRTMMGCLDETRTLEYGQVFVHCSVP---- 755
Query: 766 ESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQK 825
R + +VKGKV+V KNPCLHPGDVR+L+A+ L VDC++FPQK
Sbjct: 756 --------GRSSEGNFVVKGKVVVAKNPCLHPGDVRLLDAIDVKALHH--MVDCVVFPQK 805
Query: 826 GERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFV 885
G+RPHPNECSG DLDGD++F+ WD++L + PM Y S +DHDVT+EE+ K+F
Sbjct: 806 GKRPHPNECSGSDLDGDLYFVCWDSELTCIKQVKPMSYEPAPSIQLDHDVTIEEVQKYFA 865
Query: 886 DYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPK 945
+YM+ND LGAI+ AH V AD++ KA S++C+ LA L S+AVDF KTG PA +P L+
Sbjct: 866 NYMVNDGLGAIANAHTVFADKNSKKAMSAECIKLAKLFSIAVDFPKTGVPANLPRNLRVH 925
Query: 946 EFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEA 1005
E+PDFM++ DKP Y+S GVLGKL+R D + + I+++++A YD D+EVDGFE
Sbjct: 926 EYPDFMDKPDKPTYVSNGVLGKLFRGVKDVSSDVNTFEIFTKEVATKCYDPDMEVDGFEK 985
Query: 1006 FLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLS 1065
+L A +K Y+ ++ LM+YYG TE E+++GN+ A + N D+ ++I +
Sbjct: 986 YLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNILKMAKSFDKRN----DL-EQIAFA 1040
Query: 1066 AKNLQNEAKEWFGSSCK-------ENEHPQLASAWYHVTYSPSY------CKERMALLSF 1112
K+L+ E + WF + E++ ASAWY VTY P Y +R LSF
Sbjct: 1041 MKSLRKEVRSWFNENESKYTYEDIEDDEYARASAWYCVTYHPDYWGRYNEGTQRDHFLSF 1100
Query: 1113 PWIVGDILLNIK 1124
PW V D L+ IK
Sbjct: 1101 PWCVADKLIQIK 1112
>gi|302786286|ref|XP_002974914.1| hypothetical protein SELMODRAFT_150191 [Selaginella moellendorffii]
gi|300157073|gb|EFJ23699.1| hypothetical protein SELMODRAFT_150191 [Selaginella moellendorffii]
Length = 834
Score = 733 bits (1893), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/866 (45%), Positives = 547/866 (63%), Gaps = 40/866 (4%)
Query: 274 LILEEGEEFCTTSEIVPLVKCRPGFNLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGL 333
++L G+ F VP++ GF+L EV F++N L+ N VS E +LS
Sbjct: 1 MVLRRGQPFSVRQLAVPVLSSTCGFDLPLEVEFKVNYLIQNGHVSPAGLTREFFGLLSEN 60
Query: 334 SMETALMVLQKLHKLKSICYDPVSFVKTQLHVLGRNCKSIPLSSHKRLI-----DHNVMS 388
+ L L L + + C +P S ++ + R +R + D + +
Sbjct: 61 TPAWCLSALSNLERCEKTCLNPASQIRNYMRTSNRR--------RERYLGAVAADESQIY 112
Query: 389 CYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRG 448
R LVTP+K+Y LGPELE SN V ++F+ +F+RVTFV+ED+ L + LS+S R
Sbjct: 113 VKRLLVTPLKVYFLGPELEESNRVTRHFSHKLDNFLRVTFVDEDFDSLNSYVLSSSRGRT 172
Query: 449 IFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRG 508
+T++Y R+L IL+ GI + K ++FLAFSASQLR NS+WMFA +DEV+ E +R
Sbjct: 173 ------KTEVYYRLLAILRLGIKLCGKDFQFLAFSASQLRENSLWMFADDDEVTGEYIRQ 226
Query: 509 WMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEV-TSDGNTYCFSDGIGK 567
WMG F IR+V+KCAARMGQ FS+S +TL VP +V + DVE T DG+ YCFSDGIG
Sbjct: 227 WMGDFLSIRNVAKCAARMGQSFSTSTRTLDVPRGEVRQLSDVETFTMDGHKYCFSDGIGT 286
Query: 568 ISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSFRKLSLRRSMLKFESRNRMLN 627
IS FA +VA++C S PSAFQIRYGGYKGV+AVD S KLSLR SM KF S L+
Sbjct: 287 ISREFATRVARRCRASTVPSAFQIRYGGYKGVVAVDPASCFKLSLRPSMSKFPSEQTTLD 346
Query: 628 VTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNG 687
V + + +P +LNREIISLLSTL V D VFE MQ Q+ LL +ML++ A DVL+ L
Sbjct: 347 VLEKTRYIPSYLNREIISLLSTLEVPDGVFERMQAHQVELLDRMLLDSAATYDVLRVLYA 406
Query: 688 VDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETG 747
+ +LV M+L G+ P EPY+ +L + QL L+ + RI+VPKGRLL+GC DE
Sbjct: 407 GECHKLLVSMVLAGFSPVTEPYMRSLLQAFRAAQLLSLEKKSRIFVPKGRLLMGCLDEQR 466
Query: 748 ILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVY 807
+L YGQ FV+V+ ++ +++Q+F +V G V+V KNPCLHPGDV VLEAV
Sbjct: 467 VLRYGQCFVQVSPL--QVTARNQAF---------VVTGSVVVAKNPCLHPGDVLVLEAVD 515
Query: 808 EMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRR 867
+L VDCI+FPQ+G RPHPNECSG DLDGD +F+SWD+ LIP + PPM+Y
Sbjct: 516 VPELHH--MVDCIVFPQQGPRPHPNECSGSDLDGDQYFVSWDSALIPPKRHPPMNYEAPP 573
Query: 868 SRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAV 927
+ +DH V LEEI +FFV+++ +D+LG I+ AHL +D +AR KC+ LA L+S+AV
Sbjct: 574 AVELDHSVRLEEIQEFFVNWITSDSLGVIAHAHLALSDWSDLQARDPKCMELARLYSVAV 633
Query: 928 DFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSE 987
DF KTG PA MP L+P+++PDFME+ +K YIS V+GKLYR+ +S ++ + SE
Sbjct: 634 DFPKTGVPAVMPPELRPEQYPDFMEKRNKRTYISTRVIGKLYRSIRESHRDTNTSPLVSE 693
Query: 988 KIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASY 1047
+ + YD L V G+++ L A+ KE Y+ ++ +++N+Y S E EI++G++R+ A Y
Sbjct: 694 RSFDQQYDRALVVQGYQSHLEEAKFFKECYDSKLTSILNHYKVS-EAEIMSGSVRSLARY 752
Query: 1048 LQRDNRRYGDMKDRILLSAKNLQNEAKEWF--GSSCKENEHPQLASAWYHVTYSPSYCKE 1105
RR GD R++L+AK L EA+ WF G ENE A AWYHVTY P ++
Sbjct: 753 ---SRRRQGDAMARVVLAAKALVKEARGWFDDGGEITENEACAKAFAWYHVTYHPE-ARK 808
Query: 1106 RMALLSFPWIVGDILLNIKSVNSRKA 1131
+ LLSFPW+V D L+ IK NS ++
Sbjct: 809 KSDLLSFPWVVSDKLVAIKKRNSARS 834
>gi|413938756|gb|AFW73307.1| putative RNA-dependent RNA polymerase [Zea mays]
Length = 933
Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/947 (42%), Positives = 579/947 (61%), Gaps = 43/947 (4%)
Query: 191 LFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKSIGCSTSFFWE 250
+F+++ PKIY+ + G F ++ ++D D W RT DF+ + SIG S+ E
Sbjct: 1 MFQVQAAPKIYKLLPG-RPGLMFEDPFFNWFRDDTDEQWTRTIDFTPSASIGQSSILCLE 59
Query: 251 IKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTTSEIVPLVKCRPGFNLSHEVLFQLNS 310
+ I + F +YKE D G + S +VP+VK + +E+LF++N
Sbjct: 60 VPQQCELPRIGDYFVYYKEQNLDFECRNGYSYSCGSNLVPIVKSPDYIEVPYEILFKINH 119
Query: 311 LVHNQKVSLVAADAELIQILSGL--SMETALMVLQKLHKLKSICYDPVSFVKTQLHVLGR 368
LV N +S D + +S ++ L K+ LKS C +P ++ Q + +
Sbjct: 120 LVQNGTLSGPTVDHSFFRHVSPKFEPIDHIKRALLKMTYLKSTCLNPTDWLSVQYSRIRK 179
Query: 369 NCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTF 428
+ + S+ L D ++ +R VTP K+Y GPE+ SN VV++F+ +F+R++F
Sbjct: 180 SRHASQKLSNISL-DDGLVYVHRVQVTPAKVYFYGPEINVSNRVVRHFSADIDNFLRISF 238
Query: 429 VEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLR 488
V+ED KL + LS G ++ RT +Y+R+L++L +GI IGDKH+EFLAFS+SQLR
Sbjct: 239 VDEDCEKLRSADLSPRSTSGNDAR--RTALYNRVLSVLSNGINIGDKHFEFLAFSSSQLR 296
Query: 489 NNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIP 548
+NS WMFAS ++A D+R WMG F IR+V+K AAR+GQ FSSS +TL V +VE IP
Sbjct: 297 DNSAWMFASRQGLTASDIRKWMGDFRDIRNVAKYAARLGQSFSSSTETLKVHKSEVERIP 356
Query: 549 DVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSH-TPSAFQIRYGGYKGVIAVDRNSF 607
D+ ++G Y FSDG+GKIS +FA +VA KC L PS FQIRYGGYKGV+AVD S
Sbjct: 357 DI---TNGTKYIFSDGVGKISANFAVEVAMKCKLKRFAPSVFQIRYGGYKGVVAVDTRSN 413
Query: 608 RKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLIL 667
KLSLR+SM KF+S N L+V +S+ PCFLNR++I+LLSTLGV D VFE Q++ L
Sbjct: 414 HKLSLRKSMSKFQSENITLDVLAYSKYQPCFLNRQLITLLSTLGVSDNVFELKQKEALRQ 473
Query: 668 LGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKS 727
L +M+ +AA + ++ + + N++ ++L GY+P+ EPYLSM+L + ++L +LK+
Sbjct: 474 LNRMVTEPQAAREAVELMPMGEVTNVVKELLSCGYQPDHEPYLSMLLQTFRASKLLELKT 533
Query: 728 RCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKV 787
+ RI++ +GR ++GC DET L YGQVFV+ + + + D + +V GKV
Sbjct: 534 KSRIFITQGRAMMGCLDETCTLKYGQVFVQASYSAD-------------DHRKVVVTGKV 580
Query: 788 LVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFIS 847
+V KNPCLHPGD+RVL+AV L DC++FPQ+G RPHPNECSG DLDGDI+F+S
Sbjct: 581 VVAKNPCLHPGDIRVLQAVDVPALHH--LFDCVVFPQQGPRPHPNECSGSDLDGDIYFVS 638
Query: 848 WDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRD 907
WD LIP PMDYT + +DHDVT+EEI ++F +Y++N++LG I+ AH+V AD++
Sbjct: 639 WDPHLIPSRLVDPMDYTPASAETLDHDVTIEEIQEYFTNYIVNESLGIIANAHVVFADQE 698
Query: 908 PDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGK 967
KA S C+ LA L S+AVDF KTG PA +P L KE+PDFME+ DK Y S GV+GK
Sbjct: 699 RMKAESPPCVQLAKLFSIAVDFPKTGVPALIPHELHVKEYPDFMEKLDKVTYESKGVIGK 758
Query: 968 LYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNY 1027
LYR I+ ++ ++A SYD DL VDG+E ++ A KE Y+ + LM++
Sbjct: 759 LYREIKKHTPHIKH---FTREVARRSYDTDLIVDGYEDYITEAIEFKEEYDFRLGNLMDH 815
Query: 1028 YGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGS-SCKENEH 1086
YG +E EI++G + A + + D I ++ ++L+ EA+ WF S E+
Sbjct: 816 YGIKSEAEIISGCILKMAKNFTKSSD-----ADAIRMAVRSLRKEARSWFNEMSTGEDGQ 870
Query: 1087 PQL---ASAWYHVTYSPSYCK------ERMALLSFPWIVGDILLNIK 1124
+ ASAWYHVTY Y +R L+SFPW V D L+ IK
Sbjct: 871 DAMEAKASAWYHVTYHQQYWGSYNEGYDRPHLISFPWCVYDKLVAIK 917
>gi|302812554|ref|XP_002987964.1| hypothetical protein SELMODRAFT_126929 [Selaginella moellendorffii]
gi|300144353|gb|EFJ11038.1| hypothetical protein SELMODRAFT_126929 [Selaginella moellendorffii]
Length = 1052
Score = 711 bits (1836), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/1102 (39%), Positives = 630/1102 (57%), Gaps = 71/1102 (6%)
Query: 47 SRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKISETHSDIVPRPVKAQHRVEDGVLH 106
SRG VQF + + A L+ + L+F + L+I + + P++ RVE VL
Sbjct: 2 SRGYAFVQFATAEASQLASQLAAENALLFYGRALRI-QARKAVTHGPIRGDERVEGIVLT 60
Query: 107 VGVMCKEERLRVLQTFEGVRGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKV 166
+G E + L + GV EF G Q + Q D D +K+
Sbjct: 61 MGFARGESGIDCLWSCSGVAA---------EFCF-----GSCQLNLL-LQHDGVD--YKL 103
Query: 167 EILFEDVLETVGFSLDEGATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFD 226
E+LF ++ F E + + +L ++ + + A + S Y K +
Sbjct: 104 ELLFRNLRFVDAFV--ETSQASHLLLQVMLDTPL--AILRHFKAVRSNSYNYKYSKFAKE 159
Query: 227 FFWVRTTDFSVTKSIGCSTSFFWEIKNGL---LASDISNIFPFYKEDKTD--LILEEGEE 281
W R+TDF+ K+I S + E + L A IS Y D L L GE
Sbjct: 160 PTWTRSTDFTPGKAISQSLVYCLEFPSDLSDEQALKISKSLSGYDTSSMDRALTLVAGES 219
Query: 282 FCTTSEIVPLVKCRP--GFNLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETAL 339
+ E+ P++ G L ++++++N LV + +S + EL +L G + L
Sbjct: 220 YALQQELSPILSITEDDGAPLPFDIVYKINFLVQSGYMSPASVTRELFTLLQGFPEKLCL 279
Query: 340 MVLQKL-HKLKSICYDPVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMK 398
L KL ++ D S +++ L R + + D R +VTP K
Sbjct: 280 SALDKLVSPAGNVSLDAFSTIESYLKCHHRRSELVE-------PDGGYTYVKRLVVTPTK 332
Query: 399 IYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANAL----STSIQRGIFSKPY 454
+YC GPELE SN V + + +A++F+RV+FV+E++ L A+A+ S+Q G+ +P
Sbjct: 333 VYCTGPELERSNGVTRRYKDFAANFLRVSFVDENFETLYADAVRLPTKVSVQIGLLPEP- 391
Query: 455 RTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFN 514
+ +Y R+L +++DG+ IG K ++FL FSASQLR +S+WMFA V+AE +R WMG F
Sbjct: 392 -SSVYHRVLAVVRDGVTIGGKKFKFLGFSASQLREHSLWMFADAGSVTAESIRAWMGDFG 450
Query: 515 KIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFAR 574
+++KCAAR+GQ FSSS+ +L V ++ + D+ G YCFSDG+GKIS +FA
Sbjct: 451 GFTNIAKCAARIGQSFSSSRSSLEVLEDELSSVEDIYC---GTRYCFSDGVGKISKAFAT 507
Query: 575 QVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSES 634
VA+ C + SA QIRY GYKGV+AVD KLSLR SMLKF S L+V K S+
Sbjct: 508 SVARACNMPVVLSALQIRYAGYKGVVAVDPTCSTKLSLRPSMLKFPSERTGLDVLKASQY 567
Query: 635 MPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLN-GVDSKNI 693
P +LNR+ I L++TLGV DEVFE MQ+++L +L +ML + + A++VL+ + G ++ +I
Sbjct: 568 APYYLNRQSIILMTTLGVPDEVFERMQKEELKILDEMLSDPQTAIEVLRSSSSGGEAHSI 627
Query: 694 LVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQ 753
+V ML GY+P EP+L +L + QL L+++ RIYVPKGR L+GC DETG+L+YGQ
Sbjct: 628 MVAMLQAGYKPAHEPFLRRLLDNFRSLQLYLLRTKSRIYVPKGRCLLGCLDETGVLDYGQ 687
Query: 754 VFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEE 813
VFV+V +TR E +V GKV+VTKNPCLHPGD+ VLEAV L
Sbjct: 688 VFVQVGVTRSE--------------SACVVLGKVVVTKNPCLHPGDLLVLEAVDVPGLHH 733
Query: 814 KDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDH 873
+DC++FPQ+G+RPHPNECSG DLDGD++F++WD L+P T PMDY + +DH
Sbjct: 734 --MIDCVVFPQRGKRPHPNECSGSDLDGDLYFVTWDKSLVPPVTHEPMDYEPGTAAKLDH 791
Query: 874 DVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTG 933
VTLEEI +FFVD M++D+LG IS AHLVHAD++ ++A+ KCL LA L S AVDFAKTG
Sbjct: 792 SVTLEEIQRFFVDSMVHDSLGVISNAHLVHADKELERAKDPKCLELARLASTAVDFAKTG 851
Query: 934 APAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDS--IMQIRSNAI-WSEKIA 990
PA +P+ L+P+++PDFME E K Y S VLGKLYR+ + I RS+A+ S K
Sbjct: 852 IPAVIPVDLRPRDYPDFMENEFKSTYTSQSVLGKLYRSLQSNGRIFSQRSSAVAASPKEM 911
Query: 991 EASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQR 1050
+ +D L VDG+E + A S KE+Y+ ++ L+ +Y TE EI+TGN+ ++
Sbjct: 912 DQEFDRSLTVDGYEQHVSEARSLKELYDTKLERLLRHYEI-TEAEIVTGNVLCLGKANEK 970
Query: 1051 DNRRYGDMKDRILLSAKNLQNEAKEWFGSSCKENEHPQLASAWYHVTYSPSYCK-ERMAL 1109
R D +DRI + K+L EA WF + E++ + A AWYHVTY P + K +
Sbjct: 971 TKR--NDTRDRIACAMKSLAKEAGRWFEAGLNEHQLAK-ACAWYHVTYHPEFRKGSNVES 1027
Query: 1110 LSFPWIVGDILLNIKSVNSRKA 1131
LSFPW+V ++ + S+ K+
Sbjct: 1028 LSFPWVVPAVVEKLVSLKRAKS 1049
>gi|168044164|ref|XP_001774552.1| RNA-directed RNA polymerase [Physcomitrella patens subsp. patens]
gi|162674107|gb|EDQ60620.1| RNA-directed RNA polymerase [Physcomitrella patens subsp. patens]
Length = 843
Score = 703 bits (1815), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/852 (45%), Positives = 541/852 (63%), Gaps = 38/852 (4%)
Query: 305 LFQLNSLVHNQKVSLVAADAELIQILSG--LSMETALMVLQKLHKLKSICYDPVSFVKTQ 362
+FQ+N L+ K+ D+ +L E A +VL++L K C+DPV ++ +
Sbjct: 1 MFQVNQLLQTSKLIGETLDSRFYHLLQPDVTPHEQAKLVLERLGKRVGPCWDPVKEIQEE 60
Query: 363 LHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASD 422
L + S P S +L + R LVTP K+YC GPE++TSN V + FA ++
Sbjct: 61 LGNMKETLSS-PRSVSIKLAS-GMTWVRRVLVTPTKVYCTGPEVDTSNRVTRQFASHSDR 118
Query: 423 FMRVTFVEEDWSKLPANALST----SIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYE 478
FMR++FV+E+ L + ALS Q G+ ++ R+ +Y+R+L L++GIVIGD +E
Sbjct: 119 FMRMSFVDENLEPLSSVALSVPRRGGAQDGVDAE--RSLLYNRVLKTLKEGIVIGDHKFE 176
Query: 479 FLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLV 538
FLAFS+SQLR +SVWMFAS +++A +R WMG F IR+V+KCAARMGQ FSSSK TL
Sbjct: 177 FLAFSSSQLREHSVWMFASYAQLTATMIRAWMGDFLTIRNVAKCAARMGQCFSSSKPTLE 236
Query: 539 VPVQDVEMIPDVEVTSD--GNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGY 596
VP Q+VE IPD+E + + YCFSDGIGKIS FA++VA++ + PSAFQIRYGGY
Sbjct: 237 VPEQEVEQIPDIEREDEFGMSKYCFSDGIGKISKEFAKEVAKRLQMEVVPSAFQIRYGGY 296
Query: 597 KGVIAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEV 656
KGV+AVD +S K+SLR SM KF S++ L++ S +P +LNR+II LLSTLG++D V
Sbjct: 297 KGVVAVDPHSDFKISLRPSMRKFASKHVGLDILASSRFLPSYLNRQIILLLSTLGIEDSV 356
Query: 657 FEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLS 716
FE MQ + + L ML + + A D+LQ + + L+ ML GY+P EP++ M+L +
Sbjct: 357 FEQMQHRMVSELNDMLKDGDVARDMLQINHAGEMHTRLIDMLAAGYQPQTEPFVKMLLEA 416
Query: 717 HHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMT-------REELESKD 769
+QL DL+ R RI PKGR+L+GC DET L+YG++F++VT R+ LE+ D
Sbjct: 417 FRASQLVDLRKRSRILEPKGRVLMGCLDETKSLSYGEIFLQVTPALGRRKGLRDGLETFD 476
Query: 770 QSFFHRVDDK--TSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGE 827
++ +V G V+V KNPCLHPGD+R L+AV L + VDC++FPQKG
Sbjct: 477 SYPIGSAANQNIAYVVTGWVIVAKNPCLHPGDIRKLKAVDGPGL--RHMVDCLVFPQKGH 534
Query: 828 RPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDY 887
RPHPNECSG DLDGD++F+SWD DLIP T+ PMDYT + +DH VT+EEI +FFV Y
Sbjct: 535 RPHPNECSGSDLDGDLYFVSWDEDLIPLNTDEPMDYTSPGAMTLDHHVTIEEIQEFFVKY 594
Query: 888 MINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEF 947
M+ D+LG IS AH+V+AD +P ARS+ C LA L S+AVDF KTG PA +P L+P ++
Sbjct: 595 MVTDSLGVISNAHVVNADIEPAMARSTACQELAKLVSLAVDFPKTGVPAIIPQNLRPTKY 654
Query: 948 PDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFL 1007
PDFME+ DK Y S VLGKL+R D+ ++ I E I E ++D + + G+E F+
Sbjct: 655 PDFMEKGDKETYKSERVLGKLFRQVKDASLEKLPCEIPREDI-ERAFDPVMVITGYEEFI 713
Query: 1008 GVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRA-SYLQRDNRRYGDMKDRILLSA 1066
+A+ HK Y+ ++ LMN YG TE E ++G + N A Y++R D+ +RI +
Sbjct: 714 DMAKFHKNEYDRKLIGLMNQYGIETEAEAVSGYMLNLARQYVKRRE----DVVERIRDAV 769
Query: 1067 KNLQNEAKEWFGSSCKENEHPQL---ASAWYHVTYSPSYCK------ERMALLSFPWIVG 1117
++L NEA++ F + + + ASAWYHVTY P + K + L+SFPW++
Sbjct: 770 RSLINEARQRFDENADDMVDDDIYAKASAWYHVTYHPEHIKVSATGRREVHLISFPWVIY 829
Query: 1118 DILLNIKSVNSR 1129
++LL IK R
Sbjct: 830 NVLLQIKKAGGR 841
>gi|302814495|ref|XP_002988931.1| hypothetical protein SELMODRAFT_235652 [Selaginella moellendorffii]
gi|300143268|gb|EFJ09960.1| hypothetical protein SELMODRAFT_235652 [Selaginella moellendorffii]
Length = 755
Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/756 (49%), Positives = 495/756 (65%), Gaps = 25/756 (3%)
Query: 383 DHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALS 442
D + R LVTP+K+Y +GPELE SN V ++F+ +F+RVTFV+ED+ L + LS
Sbjct: 18 DEGQIYVKRVLVTPLKVYFIGPELEESNRVTRHFSHKLDNFLRVTFVDEDFDSLSSYVLS 77
Query: 443 TSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVS 502
+S R T++Y R+L IL+ GI + K ++FLAFSASQLR NS+WMFA +DEV+
Sbjct: 78 SSRGRT------NTEVYYRLLAILRLGIKLCGKDFQFLAFSASQLRENSLWMFADDDEVT 131
Query: 503 AEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEV-TSDGNTYCF 561
E +R WMG F IR+V+KCAARMGQ FS+S +TL VP +V + DVE T +G+ YCF
Sbjct: 132 GEYIRQWMGDFLSIRNVAKCAARMGQSFSTSTRTLDVPRGEVRQLSDVETFTPEGHKYCF 191
Query: 562 SDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSFRKLSLRRSMLKFES 621
SDGIG IS FA +VA++C S PSAFQIRYGGYKGV+AVD S KLSLR SM KF S
Sbjct: 192 SDGIGTISTEFATRVARRCRASTVPSAFQIRYGGYKGVVAVDPASCFKLSLRPSMSKFPS 251
Query: 622 RNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDV 681
L+V + + +P +LNREIISLLSTL V DEVFE MQ Q+ LL +ML++ A DV
Sbjct: 252 EQTTLDVLEKTRYIPSYLNREIISLLSTLEVPDEVFERMQAHQVELLDRMLLDSAATYDV 311
Query: 682 LQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIG 741
L+ L + +LV M+L G+ P EPY+ +L + QL L+ + RI+VPKGRLL+G
Sbjct: 312 LRVLYAGECHKLLVSMVLAGFSPVTEPYMRSLLQAFRAAQLLSLEKKSRIFVPKGRLLMG 371
Query: 742 CFDETGILNYGQVFVRVTMTR----EELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHP 797
C DE +L YGQ FV+V+ + EE D+ R ++ V G V+V KNPCLHP
Sbjct: 372 CLDEQRVLRYGQCFVQVSPLQGVPVEEEIHCDRGVTAR--NQAFAVTGSVVVAKNPCLHP 429
Query: 798 GDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCET 857
GDV VLEAV +L VDCI+FPQ+G RPHPNECSG DLDGD +F+SWD+ LIP +
Sbjct: 430 GDVLVLEAVDVPELHH--MVDCIVFPQQGPRPHPNECSGSDLDGDQYFVSWDSALIPPKR 487
Query: 858 EPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCL 917
PPM+Y + +DH V LEEI +FFV+++ +D+LG I+ AHL +D + R KC+
Sbjct: 488 HPPMNYEAPPAMELDHSVRLEEIQEFFVNWITSDSLGVIAHAHLALSDWSELQTRDPKCM 547
Query: 918 HLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIM 977
LA L+S+AVDF KTG PA MP L+P+++PDFME+ +K YIS V+GKLYR+ +S
Sbjct: 548 ELARLYSVAVDFPKTGVPAVMPPELRPEQYPDFMEKRNKRTYISTRVIGKLYRSIRESHR 607
Query: 978 QIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEIL 1037
++ + SE+ + YD L V G+++ L A+ KE Y ++ +++N+Y S E EI+
Sbjct: 608 DTNTSPLVSERSFDQQYDRALVVQGYQSHLEEAKFFKECYNSKLTSILNHYKVS-EAEIM 666
Query: 1038 TGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWF--GSSCKENEHPQLASAWYH 1095
+G++R+ A Y RR GD R++L+AK L EA+ WF G ENE A AWYH
Sbjct: 667 SGSIRSLARY---SRRRQGDAMARVVLAAKALVKEARGWFDDGGEITENEACAKAFAWYH 723
Query: 1096 VTYSPSYCKERMALLSFPWIVGDILLNIKSVNSRKA 1131
VTY P KE LLSFPW+V L+ IK NS ++
Sbjct: 724 VTYHPEARKES-DLLSFPWVV---LVAIKKRNSARS 755
>gi|251765121|sp|Q0DXS3.2|RDR1_ORYSJ RecName: Full=Probable RNA-dependent RNA polymerase 1; Short=OsRDR1
Length = 740
Score = 651 bits (1680), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/739 (46%), Positives = 479/739 (64%), Gaps = 41/739 (5%)
Query: 399 IYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKI 458
+Y GPE+ SN VV+NF+ +F+R++FV+ED KL A LS G RT +
Sbjct: 9 VYFYGPEINVSNRVVRNFSSDIENFLRISFVDEDCEKLRATDLSPRSASG--HDANRTAL 66
Query: 459 YSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRS 518
Y R+L++L DGI IG K++EFLAFS+SQLR+NS WMFAS ++A D+R WMG F IR+
Sbjct: 67 YKRVLSVLSDGITIGGKNFEFLAFSSSQLRDNSAWMFASRQGLAASDIRTWMGDFRNIRN 126
Query: 519 VSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQ 578
V+K AAR+GQ FSSS +TL V +VE I D++ +G + FSDGIGKIS +FA +VA
Sbjct: 127 VAKYAARLGQSFSSSTETLKVQKYEVEEISDIK---NGTQHVFSDGIGKISSAFANEVAM 183
Query: 579 KCGLSH-TPSAFQIRYGGYKGVIAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPC 637
KC L PSAFQIRYGGYKGV+AVD S KLSLR+SMLKF+S N ++V +S+ P
Sbjct: 184 KCNLKRFAPSAFQIRYGGYKGVVAVDPTSRWKLSLRKSMLKFQSDNITVDVLAYSKYQPG 243
Query: 638 FLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKM 697
FLNR++I+LLSTLGV+D VFE Q++ + L KM+ + +AA++ ++ + + N + ++
Sbjct: 244 FLNRQLITLLSTLGVRDSVFEQKQEEAVNQLNKMVTDPQAAIEAIELMPMGEITNAVKEL 303
Query: 698 LLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVR 757
LL GY+P+ EPYLSM+L + ++L +LK++ RI +PKGR ++GC DET L YGQVF+R
Sbjct: 304 LLCGYQPDDEPYLSMLLQTFRASKLLELKTKSRILIPKGRAMMGCLDETRTLKYGQVFIR 363
Query: 758 VTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYV 817
T D+ V GKV++ KNPCLHPGD+R+L AV L
Sbjct: 364 ATSGVN-------------DNDRFTVTGKVVIAKNPCLHPGDIRILHAVDVPVLHH--MF 408
Query: 818 DCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTL 877
+C++FPQ+G RPHPNECSG DLDGDI+F+SWD LIP PMDYT + +DHDVT+
Sbjct: 409 NCVVFPQQGPRPHPNECSGSDLDGDIYFVSWDPSLIPPRMVTPMDYTPAPTETLDHDVTI 468
Query: 878 EEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAE 937
EE+ ++F +Y++N++LG I+ AH+V AD++ KA SS C+ LA L S+AVDF KTG PA
Sbjct: 469 EEVEEYFTNYIVNESLGMIANAHVVFADKEDLKAESSPCIELAKLFSIAVDFPKTGVPAL 528
Query: 938 MPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHD 997
+P L KE+PDFME+ DK Y S GV+GKLYR I+ ++ ++A SYD D
Sbjct: 529 IPPELHVKEYPDFMEKLDKVTYESKGVIGKLYREIKKHTPHIKH---FTREVARRSYDTD 585
Query: 998 LEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGD 1057
+ VDG+E ++ A + K+ Y+ ++ LM++YG +E EI++G + A + +
Sbjct: 586 MIVDGYEDYITEAMALKDEYDFKLGNLMDHYGIKSEAEIISGCILKMAKNFTKKSD---- 641
Query: 1058 MKDRILLSAKNLQNEAKEWFGS-SCKENEHPQ-----LASAWYHVTYSPSY--C----KE 1105
D I L+ ++L+ EA+ F S +N H ASAWYHVTY P + C E
Sbjct: 642 -ADAIRLAVRSLRKEARSRFSEMSLDDNGHGHDASEAKASAWYHVTYHPEFWGCYNEGYE 700
Query: 1106 RMALLSFPWIVGDILLNIK 1124
R +SFPW + + LL IK
Sbjct: 701 RPHFISFPWCIYEKLLRIK 719
>gi|238015130|gb|ACR38600.1| unknown [Zea mays]
Length = 525
Score = 640 bits (1652), Expect = e-180, Method: Compositional matrix adjust.
Identities = 308/511 (60%), Positives = 382/511 (74%), Gaps = 5/511 (0%)
Query: 616 MLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINR 675
M KFES++ MLN+T WS+S PC++NREIISLLSTLG+KDEVFE+MQQ + ML N+
Sbjct: 1 MKKFESKSTMLNITNWSKSQPCYVNREIISLLSTLGIKDEVFESMQQDDMHESDGMLTNK 60
Query: 676 EAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPK 735
EAAL VL K+ G D+K MLLQGYEP+ EPYL M+L +H N+L+D+++RC+I+V K
Sbjct: 61 EAALSVLGKIGGGDTKTA-ADMLLQGYEPSSEPYLLMILKAHRANRLTDIRTRCKIHVQK 119
Query: 736 GRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCL 795
GR+LIGC DET L YGQV++R+T +E + +Q FF D KT+++ GKV +TKNPCL
Sbjct: 120 GRVLIGCLDETCKLEYGQVYIRITKNHKEQKYSEQPFFCNDDGKTAVIVGKVAITKNPCL 179
Query: 796 HPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPC 855
HPGDVRVLEAVY+ L+ + +DC++FPQ+GERPHPNECSGGDLDGD+FFI+WD+ LIP
Sbjct: 180 HPGDVRVLEAVYDPGLDARGLIDCVVFPQRGERPHPNECSGGDLDGDLFFITWDDKLIPE 239
Query: 856 ETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSK 915
+ + PMDYT R RIMDH VTLEEI K FV YMINDTLGAISTAHL+HADRDP KARS +
Sbjct: 240 KVDAPMDYTATRPRIMDHAVTLEEIQKHFVSYMINDTLGAISTAHLIHADRDPLKARSPE 299
Query: 916 CLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDS 975
C+ LA LHSMAVDFAKTGAPAEMPLAL+P+EFPDFMER ++P Y+S GVLGKLYRA L
Sbjct: 300 CVQLAALHSMAVDFAKTGAPAEMPLALRPREFPDFMERWERPMYVSNGVLGKLYRAALRH 359
Query: 976 IMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDE 1035
+ + A+ YD DLEV GF+ FL AE E Y E + ALM YY A EDE
Sbjct: 360 --EEDAEALLPAGPPSCVYDPDLEVAGFDEFLDAAEERYEAYAERLGALMTYYSAEREDE 417
Query: 1036 ILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSCKENEHPQLASAWYH 1095
ILTGN+RN+ YL+RDN+RY +MKDRI+ + L E + W +CKE++ ++ASAWYH
Sbjct: 418 ILTGNIRNKLVYLRRDNKRYFEMKDRIIAAVDALHAEVRGWL-RACKEDDASRVASAWYH 476
Query: 1096 VTYSPSYCKERMALLSFPWIVGDILLNIKSV 1126
VTY P E+ SFPWI+ D LL IK+
Sbjct: 477 VTYHPDRRGEKR-FWSFPWIICDTLLAIKAA 506
>gi|142942403|gb|ABO92978.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 935
Score = 634 bits (1636), Expect = e-179, Method: Compositional matrix adjust.
Identities = 377/938 (40%), Positives = 552/938 (58%), Gaps = 58/938 (6%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKA 64
T+ V P+ A+ + FLE G +V ALE+ +S SR +VQF K
Sbjct: 4 TIQVYGFPRLLSAEVVKSFLEKHTGYGTVCALEV--KQSKGGSRAFAKVQFVDNISADKI 61
Query: 65 QNLSLNDKLVFNSQNLKISETHSDIVPRPVKAQHRVEDGV-LHVGVMCKEERLRVLQTFE 123
NL+ + +L F S LK E +DIV H DG+ L+ G +++ VL + E
Sbjct: 62 INLA-SKRLYFGSSYLKAWELETDIVQLWAYVDHM--DGITLNFGCQISDDKFAVLGSTE 118
Query: 124 GVRGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFSLDE 183
+ + + F S S+D +K+++ +E++ + V
Sbjct: 119 VSIKFGIGLKNFFFF----------------LSSGSAD--YKLQLSYENIWQVV-LHRPY 159
Query: 184 GATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKSIGC 243
G +L +L P+IY+++ + Y KE D WVRTTDF+ + IG
Sbjct: 160 GQNAQFLLIQLFGAPRIYKRLE---------NSCYSFFKETPDDQWVRTTDFTPS-WIGL 209
Query: 244 STSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTT--SEIVPLVKCRPGFNLS 301
S+S + + G+ + F Y E + ++ L+ G F + S +VP V+ G +
Sbjct: 210 SSSLCLQFRRGVHLPNFQESFFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIP 269
Query: 302 HEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALM--VLQKLHKLKSICYDPVSFV 359
+++LF+++SLV + + A + +++ A + L+KL+ LK CYDPV ++
Sbjct: 270 YKILFKISSLVQHGCIPGPALNVYFFRLVDPQRRNVACIEQALEKLYYLKECCYDPVRWL 329
Query: 360 KTQL--HVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFA 417
Q + GR P S +D ++ R LVTP K+Y GPE+ SN V++N++
Sbjct: 330 TEQYDGYFKGRQ----PPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYS 385
Query: 418 KYASDFMRVTFVEEDWSKLPANAL--STSIQRGIFSKPYRTKIYSRILTILQDGIVIGDK 475
+ +F+RV+FV+E+W KL + L S GI RT IY RIL+ L+ G VIGDK
Sbjct: 386 EDIDNFLRVSFVDEEWEKLYSTELLPKASTGNGI-----RTNIYERILSTLRKGFVIGDK 440
Query: 476 HYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQ 535
+EFLAFS+SQLR+NSVWMFAS ++A D+R WMG F++I++V+K AAR GQ F SS++
Sbjct: 441 KFEFLAFSSSQLRDNSVWMFASRRGLTANDIRSWMGDFSQIKNVAKYAARFGQSFGSSRE 500
Query: 536 TLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGG 595
TL V ++E+IPDV+V G +Y FSDGIGKIS FAR+VA CGL +TPSAFQIRYGG
Sbjct: 501 TLSVLRHEIEVIPDVKV--HGTSYVFSDGIGKISADFARKVASNCGLQYTPSAFQIRYGG 558
Query: 596 YKGVIAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDE 655
YKGV+AVD S KLSLR+SM K+ES N L+V +WS+ PC+LNR++++LLSTLGVKD+
Sbjct: 559 YKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLEWSKYQPCYLNRQLVTLLSTLGVKDD 618
Query: 656 VFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLL 715
V E Q++ + L +L + A + L+ ++ ++ NIL ML GY P+ EP+LSMML
Sbjct: 619 VLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQ 678
Query: 716 SHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFH- 774
+ ++L DL+++ RI++P GR ++GC DE+ L YGQVFV+ T S+D F+
Sbjct: 679 TFRASKLLDLRTKSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNN 738
Query: 775 -RVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNE 833
R + I+KG V+V KNPCLHPGD+RVL AV L VDC++FPQKG+RPHPNE
Sbjct: 739 SRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHH--MVDCVVFPQKGKRPHPNE 796
Query: 834 CSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTL 893
CSG DLDGDI+F+ WD D+IP M++ S +DHDVT+EE+ ++F +Y++ND L
Sbjct: 797 CSGSDLDGDIYFVCWDQDMIPPRQVQAMEFPPPPSIQLDHDVTIEEVEEYFTNYIVNDGL 856
Query: 894 GAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAK 931
G I+ AH+V ADR+PD A S+ +L + + F +
Sbjct: 857 GIIANAHVVFADREPDMAMSNHAKNLLSSFQLQWTFQR 894
>gi|125541045|gb|EAY87440.1| hypothetical protein OsI_08849 [Oryza sativa Indica Group]
Length = 1067
Score = 618 bits (1594), Expect = e-174, Method: Compositional matrix adjust.
Identities = 408/1143 (35%), Positives = 615/1143 (53%), Gaps = 116/1143 (10%)
Query: 1 MVLATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRS-NWKSRGIGRVQFTSLD 59
M + T+ VS A + LE +G +V+A+++ ++ SR VQF + +
Sbjct: 1 MGVKTLQVSGFALDDSADYVKDLLERIVGCGNVYAVKLRHPKNVTATSRAYAIVQFQTEE 60
Query: 60 FKSKAQNLSLNDKLVFNSQNLKISETHSDIVPRPVKAQHRVEDGVLHVGVMCKEERLRVL 119
S +N + L LK+ + DIVPRP + ++ED LH G + KE L L
Sbjct: 61 HASLVKNAAQRKILRRGHYYLKVHPSDRDIVPRPRVSMFKLEDVTLHFGCLLKETILSAL 120
Query: 120 QTFEGVRGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGF 179
+ GV + +++ F++ Q +S +K+E+ +E + E +
Sbjct: 121 WSRTGVSVEFGFNLKKIYFYL---------------QLPNSSIEYKLELSYESIWE-IQL 164
Query: 180 SLDEGATVNGILFKLKYGPKIYQKVSGPHVASKFPSDR-YHICKEDFDFFWVRTTDFSVT 238
+ +L +++ PKIY++ P + D ++ ++ D W RTTDF+ +
Sbjct: 165 QRPPKSQTKFLLIQVQAAPKIYEQT--PRRSGVMYEDPLFNYFRDHTDDQWTRTTDFTSS 222
Query: 239 KSIGCSTSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGE-EFCTTSEIVPLVKCRPG 297
SIG S E+ +I + F +Y E D G + + + VP+VK R G
Sbjct: 223 SSIGQSYILCLEVPRRCDLPNIRDYFFYYHEYNHDFECRSGGYPYSSDTRFVPIVKSR-G 281
Query: 298 FNLSHEVLFQLNSLVHNQKVSLVAADAELIQILSG--LSMETALMVLQKLHKLKSICYDP 355
+ + +E+LF++N LV N +S D +++S + ++ L+ + LK C +P
Sbjct: 282 Y-VPYEILFKINHLVQNGTLSGPTVDDSFFRLVSPAFVPIDHIKRALEMMSYLKKTCLNP 340
Query: 356 VSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKN 415
S++ Q R+ P S +D ++ YR VTP K+Y GPE+ SN VV+N
Sbjct: 341 TSWLSEQYSKFRRSRYVQP--SPNISLDDGLVYVYRVQVTPAKVYFYGPEINVSNRVVRN 398
Query: 416 FAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDK 475
F+ +F+R++FV+ED KL A LS G RT +Y R+L +L DGI IG K
Sbjct: 399 FSSDIENFLRISFVDEDCEKLRATDLSPRSASG--HDANRTALYKRVLLVLSDGITIGGK 456
Query: 476 HYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQ 535
++EFLAFS+SQLR+NS WMFAS ++A D+R WMG F IR+V+K AAR+GQ FSSS +
Sbjct: 457 NFEFLAFSSSQLRDNSAWMFASRQGLAASDIRTWMGDFRNIRNVAKYAARLGQSFSSSTE 516
Query: 536 TLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSH-TPSAFQIRYG 594
TL V +VE I D++ +G + FSDGIGKIS +FA +VA KC L PSAFQIRYG
Sbjct: 517 TLKVQKYEVEEISDIK---NGTQHVFSDGIGKISSAFANEVAMKCNLKRFAPSAFQIRYG 573
Query: 595 GYKGVIAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKD 654
GYKGV+AVD S KLSLR+SMLKF+S N ++V +S+ P FLNR++I+LLSTLGV+D
Sbjct: 574 GYKGVVAVDPTSRWKLSLRKSMLKFQSDNITVDVLAYSKYQPGFLNRQLITLLSTLGVRD 633
Query: 655 EVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMML 714
VFE Q++ + L KM+ + +AA++ ++ + + N + ++LL GY+P+ EPYLSM+L
Sbjct: 634 SVFEQKQEEAVNQLNKMVTDPQAAIEAIELMPMGEITNAVKELLLCGYQPDDEPYLSMLL 693
Query: 715 LSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFH 774
+ ++L +LK++ RI +PKGR ++GC DET L YGQVF+R T D H
Sbjct: 694 QTFRASKLLELKTKSRILIPKGRAMMGCLDETRTLKYGQVFIRATSG-----VNDNDRPH 748
Query: 775 RVDDKTSIVKGKV-LVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNE 833
+ S + G + V+ +P L P + + DY P P E
Sbjct: 749 PNECSGSDLDGDIYFVSWDPSLIPPRM----------VTPMDYT-----------PAPTE 787
Query: 834 CSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTL 893
LD D+ T+EE+ ++F +Y++N++L
Sbjct: 788 T----LDHDV--------------------------------TIEEVEEYFTNYIVNESL 811
Query: 894 GAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMER 953
G I+ AH+V AD++ KA SS C+ LA L S+AVDF KTG PA +P L KE+PDFME+
Sbjct: 812 GMIANAHVVFADKEDLKAESSPCIELAKLFSIAVDFPKTGVPALIPPELHVKEYPDFMEK 871
Query: 954 EDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESH 1013
DK Y S GV+GKLYR I+ ++ ++A SYD D+ VDG+E ++ A +
Sbjct: 872 LDKVTYESKGVIGKLYREIKKHTPHIKH---FTREVARRSYDTDMIVDGYEDYITEAMAL 928
Query: 1014 KEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEA 1073
K+ Y+ ++ LM++YG +E EI++G + A + + D I L+ ++L+ EA
Sbjct: 929 KDEYDFKLGNLMDHYGIKSEAEIISGCILKMAKNFTKKSD-----ADAIRLAVRSLRKEA 983
Query: 1074 KEWFGS-SCKENEHPQ-----LASAWYHVTYSPSY--C----KERMALLSFPWIVGDILL 1121
+ F S +N H ASAWYHVTY P + C ER +SFPW + + LL
Sbjct: 984 RSRFSEMSLDDNGHGHDASEAKASAWYHVTYHPEFWGCYNEGYERPHFISFPWCIYEKLL 1043
Query: 1122 NIK 1124
IK
Sbjct: 1044 RIK 1046
>gi|142942513|gb|ABO93004.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 841
Score = 601 bits (1550), Expect = e-169, Method: Compositional matrix adjust.
Identities = 364/885 (41%), Positives = 520/885 (58%), Gaps = 58/885 (6%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKA 64
T+ V P A+ + FLE G +V ALE+ +S SR +VQF K
Sbjct: 4 TIQVYGFPYLLSAEVVKSFLEKHTGYGTVCALEV--KQSKGGSRAFAKVQFVDNISADKI 61
Query: 65 QNLSLNDKLVFNSQNLKISETHSDIVPRPVKAQHRVEDGV-LHVGVMCKEERLRVLQTFE 123
NL+ + +L F S LK E +DIV H DG+ L+ G +++ VL + E
Sbjct: 62 INLA-SKRLYFGSSYLKAWEMKTDIVQLRAYVDHM--DGITLNFGCQISDDKFAVLGSTE 118
Query: 124 GVRGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFSLDE 183
V K +K S S+D +K+++ +E++ + V
Sbjct: 119 ----------------VSIKFGIGLKKFFFFLSSGSAD--YKLQLSYENIWQVV-LHRPY 159
Query: 184 GATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKSIGC 243
G +L +L P+IY+++ + Y KE D WVRTTDF+ + IG
Sbjct: 160 GQNAQFLLIQLFGAPRIYKRLE---------NSCYSFFKETPDDQWVRTTDFAPS-WIGL 209
Query: 244 STSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTT--SEIVPLVKCRPGFNLS 301
S+S + + G+ + F Y E + ++ L+ G F + S +VP V+ G +
Sbjct: 210 SSSLCLQFRRGVHLPNFQESFFHYTERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIP 269
Query: 302 HEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALM--VLQKLHKLKSICYDPVSFV 359
+++LF+++SLV + + A + +++ A + L+KL+ LK CYDPV ++
Sbjct: 270 YKILFKISSLVQHGCIPGPALNVYFFRLVDPQRRNVACIEQALEKLYYLKECCYDPVRWL 329
Query: 360 KTQL--HVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFA 417
Q ++ GR P S +D ++ R LVTP K+Y GPE+ SN V++N++
Sbjct: 330 TEQYDGYLKGRQ----PPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYS 385
Query: 418 KYASDFMRVTFVEEDWSKLPANAL--STSIQRGIFSKPYRTKIYSRILTILQDGIVIGDK 475
+ +F+RV+FV+E+W KL + L S GI RT IY RIL+ L+ G VIGDK
Sbjct: 386 EDIDNFLRVSFVDEEWEKLYSTDLLPKASTGNGI-----RTNIYERILSTLRKGFVIGDK 440
Query: 476 HYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQ 535
+EFLAFS+SQLR+NSVWMFAS ++A D+R WMG F++I++V+K AAR+GQ F SSK+
Sbjct: 441 KFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSKE 500
Query: 536 TLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGG 595
TL V ++E+IPDV+V G +Y FSDGIGKIS FAR+VA KCGL +TPSAFQIRYGG
Sbjct: 501 TLSVLRHEIEVIPDVKV--HGTSYVFSDGIGKISADFARRVASKCGLQYTPSAFQIRYGG 558
Query: 596 YKGVIAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDE 655
YKGV+AVD S KLSLR+SM K+ES N L+V WS+ PC+LNR++++LLSTLGVKD+
Sbjct: 559 YKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDD 618
Query: 656 VFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLL 715
V E Q++ + L +L + A + L+ ++ ++ NIL ML GY P+ EP+LSMML
Sbjct: 619 VLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQ 678
Query: 716 SHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFH- 774
+ ++L DL++R RI++P GR ++GC DE+ L YGQVFV+ T S+D F+
Sbjct: 679 TFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNN 738
Query: 775 -RVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNE 833
R + I+KG V+V KNPCLHPGD+RVL AV L VDC++FPQKG+RPHPNE
Sbjct: 739 SRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHH--MVDCVVFPQKGKRPHPNE 796
Query: 834 CSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLE 878
CSG DLDGDI+F+ WD D+IP PM+Y S +DHDVT+E
Sbjct: 797 CSGSDLDGDIYFVCWDQDMIPPRQVQPMEYPPAPSIQLDHDVTIE 841
>gi|357466249|ref|XP_003603409.1| Rna-dependent RNA polymerase [Medicago truncatula]
gi|355492457|gb|AES73660.1| Rna-dependent RNA polymerase [Medicago truncatula]
Length = 1188
Score = 587 bits (1513), Expect = e-164, Method: Compositional matrix adjust.
Identities = 373/1014 (36%), Positives = 541/1014 (53%), Gaps = 72/1014 (7%)
Query: 162 CCFKVEILFEDVLETVGFSLDEGATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHIC 221
C FKV L D+ E + D V +L +L P ++ + + + D
Sbjct: 180 CDFKVGFLIRDIEEIQRYD-DTSHLV--VLLRLASSPLVWYRTADDDIDESVTIDLL--- 233
Query: 222 KEDFDFFWVRTTDFSVTKSIGCSTSFFWEIK-------NGLLASDISNIFPFYKEDKTDL 274
D D W+RTTDF+ + +IG + I N L P +
Sbjct: 234 --DDDDPWIRTTDFTPSGAIGRCNYYRISIPPRHGAKLNKALEYLRRQRVPRIPLKRPPK 291
Query: 275 ILEEGEEFCTTSEIVPLVKCRPGFNLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLS 334
I E + S+ + + ++S +++F +N++VH + + + ++L
Sbjct: 292 IQNEPDFGVPMSDAFFYIDSQK--DISFDIMFLINAIVHRGIFNQYSLSNKFFELLKNQP 349
Query: 335 METALMVLQKLHKLKSICYDPVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALV 394
+ + L+ + K +D ++ L RN K +S +VM R +V
Sbjct: 350 KDVNVAALKHICTYKHPVFDAAKRLEAVQKWLLRNPKFYQISKQS----DDVMEVRRLVV 405
Query: 395 TPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALS---TSIQRGIFS 451
TP K YC+ PE+E SN V++ F + + F+RVTF++E L AL+ I + I S
Sbjct: 406 TPTKAYCISPEVELSNRVLRRFREVSDRFLRVTFMDEGQQTLNNYALNYYVAPIVKEITS 465
Query: 452 KPY--RTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGW 509
+ +T+IY R+ TIL DG + Y FLAFS++QLR+ S W FA + +++ +D+R W
Sbjct: 466 NSFQQKTRIYKRVKTILDDGFYFCGRKYSFLAFSSNQLRDRSAWFFAEDKDITCDDIRNW 525
Query: 510 MGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVE-MIPDVEVTSDGNTYCFSDGIGKI 568
MG FN+ ++V+KCAARMGQ FSS+ ++ VP +V M+PDVE N Y FSDGIG I
Sbjct: 526 MGRFNQ-KNVAKCAARMGQCFSSTYASVEVPANEVNSMLPDVE----RNNYVFSDGIGII 580
Query: 569 SLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAV--DRNSFRKLSLRRSMLKFESRNRML 626
+ A +VA+K L PSA+QIRY G+KGV+A + KLSLR SM KF+S + L
Sbjct: 581 TTDLAVEVAEKLKLDKAPSAYQIRYAGFKGVVACWPAKGDGIKLSLRPSMNKFQSTHTTL 640
Query: 627 NVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLN 686
+ W+ P FLNR+II+LLS L V DE+F MQ+ + L +ML++R+ A DVL K +
Sbjct: 641 EICAWTRFQPGFLNRQIITLLSALDVPDEIFWKMQEGMISSLNQMLVDRDVAYDVLTK-S 699
Query: 687 GVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDET 746
+ N ML G+ P EP+L ML S QL L+ + RI+V GR L+G DE
Sbjct: 700 CAEHGNAAAIMLSCGFSPKTEPHLRGMLNSIRAAQLWGLREKSRIFVSSGRWLMGVLDEL 759
Query: 747 GILNYGQVFVRV-TMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEA 805
G+L GQ FV+V T + E SK S F +VKG V++ KNPCLHPGDVRVLEA
Sbjct: 760 GVLEQGQCFVQVSTPSLENCFSKHGSRFSETK-TVHVVKGIVVIAKNPCLHPGDVRVLEA 818
Query: 806 VYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETE--PPMDY 863
V L DC++FPQKGERPH +E SG DLDGD++F++WD +LIP PPM+Y
Sbjct: 819 VDVPDLHH--LYDCVVFPQKGERPHTDEASGSDLDGDLYFVTWDGNLIPPSKRSWPPMEY 876
Query: 864 TGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLH 923
+ SR+ VT+++I FFV M+N+ LG+I AH+VHAD A C+HLA L
Sbjct: 877 AAQESRLQTRQVTVQDIIDFFVRNMVNEQLGSICNAHVVHADSSDYGALDENCVHLAELA 936
Query: 924 SMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNA 983
+ AVDF KTG MP LKPK +PDFM +E Y S +LG+LYR D+ +
Sbjct: 937 ATAVDFPKTGKLVTMPSNLKPKLYPDFMGKEHHQSYKSKKILGRLYRRIKDAYDKDIDAP 996
Query: 984 IWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRN 1043
++ ++ YD DLEV G F+ A + Y+ +++ L+ Y TE+E++TG + +
Sbjct: 997 EFNCVSSDILYDTDLEVPGSSEFIADAWEQRCSYDGQLSGLLGQYKVKTEEEVVTGQIWS 1056
Query: 1044 RASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGS--------SCKENE--HPQLASAW 1093
Y ++R+ G++K+R+ S L+ E ++ F S KE + Q ASAW
Sbjct: 1057 MPKY---NSRKQGELKERLKHSYSALKKEFRQIFEKLKSDVGELSDKEKNLLYEQKASAW 1113
Query: 1094 YHVTYSPSYCKE------------------RMALLSFPWIVGDILLNIKSVNSR 1129
Y VTY P + K+ M +LSFPWI D L K+ + R
Sbjct: 1114 YQVTYHPKWVKKSLDLQLKSSDNQSADSLGNMVMLSFPWIAVDYLACTKTRHRR 1167
>gi|222623633|gb|EEE57765.1| hypothetical protein OsJ_08301 [Oryza sativa Japonica Group]
Length = 1027
Score = 586 bits (1511), Expect = e-164, Method: Compositional matrix adjust.
Identities = 396/1143 (34%), Positives = 598/1143 (52%), Gaps = 156/1143 (13%)
Query: 1 MVLATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRS-NWKSRGIGRVQFTSLD 59
M + T+ VS A + LE +G +V+A+++ ++ SR VQF + +
Sbjct: 1 MGVKTLQVSGFALDDSADYVKDLLERIVGCGNVYAVKLRHPKNVTATSRAYAIVQFQTEE 60
Query: 60 FKSKAQNLSLNDKLVFNSQNLKISETHSDIVPRPVKAQHRVEDGVLHVGVMCKEERLRVL 119
S +N + L LK+ + DIVPRP + ++ED LH G + KE L L
Sbjct: 61 HASLVKNAAQRKILRRGHYYLKVHPSDRDIVPRPRVSMFKLEDVTLHFGCLLKETILSAL 120
Query: 120 QTFEGVRGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGF 179
+ +GV + +++ F++ Q +S +K+E+ E + E +
Sbjct: 121 WSRKGVSVEFGFNLKKIYFYL---------------QLPNSSIEYKLELSHESIWE-IQL 164
Query: 180 SLDEGATVNGILFKLKYGPKIYQKVSGPHVASKFPSDR-YHICKEDFDFFWVRTTDFSVT 238
+ +L +++ PKIY++ P + D ++ ++ D W RTTDF+ +
Sbjct: 165 QRPPKSQTKFLLIQVQAAPKIYEQT--PRRSGVMYEDPLFNYFRDHTDDQWTRTTDFTSS 222
Query: 239 KSIGCSTSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGE-EFCTTSEIVPLVKCRPG 297
SIG S E+ +I + F +Y E D G + + + VP+VK R G
Sbjct: 223 SSIGQSYILCLEVPRRCDLPNIRDYFFYYHEYNHDFECRSGGYPYSSDTRFVPIVKSR-G 281
Query: 298 FNLSHEVLFQLNSLVHNQKVSLVAADAELIQILSG--LSMETALMVLQKLHKLKSICYDP 355
+ + +E+LF++N LV N +S D +++S + ++ L+ + LK C +P
Sbjct: 282 Y-VPYEILFKINHLVQNGTLSGPTVDDSFFRLVSPAFVPIDHIKRALEMMSYLKKTCLNP 340
Query: 356 VSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKN 415
+Y GPE+ SN VV+N
Sbjct: 341 T------------------------------------------MYFYGPEINVSNRVVRN 358
Query: 416 FAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDK 475
F+ +F+R++FV+ED KL A LS G RT +Y R+L++L DGI IG K
Sbjct: 359 FSSDIENFLRISFVDEDCEKLRATDLSPRSASG--HDANRTALYKRVLSVLSDGITIGGK 416
Query: 476 HYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQ 535
++EFLAFS+SQLR+NS WMFAS ++A D+R WMG F IR+V+K AAR+GQ FSSS +
Sbjct: 417 NFEFLAFSSSQLRDNSAWMFASRQGLAASDIRTWMGDFRNIRNVAKYAARLGQSFSSSTE 476
Query: 536 TLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSH-TPSAFQIRYG 594
TL V +VE I D++ +G + FSDGIGKIS +FA +VA KC L PSAFQIRYG
Sbjct: 477 TLKVQKYEVEEISDIK---NGTQHVFSDGIGKISSAFANEVAMKCNLKRFAPSAFQIRYG 533
Query: 595 GYKGVIAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKD 654
GYKGV+AVD S KLSLR+SMLKF+S N ++V +S+ P FLNR++I+LLSTLGV+D
Sbjct: 534 GYKGVVAVDPTSRWKLSLRKSMLKFQSDNITVDVLAYSKYQPGFLNRQLITLLSTLGVRD 593
Query: 655 EVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMML 714
VFE Q++ + L KM+ + +AA++ ++ + + N + ++LL GY+P+ EPYLSM+L
Sbjct: 594 SVFEQKQEEAVNQLNKMVTDPQAAIEAIELMPMGEITNAVKELLLCGYQPDDEPYLSMLL 653
Query: 715 LSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFH 774
+ ++L +LK++ RI +PKGR ++GC DET L YGQVF+R T D H
Sbjct: 654 QTFRASKLLELKTKSRILIPKGRAMMGCLDETRTLKYGQVFIRATSG-----VNDNDRPH 708
Query: 775 RVDDKTSIVKGKV-LVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNE 833
+ S + G + V+ +P L P + + DY P P E
Sbjct: 709 PNECSGSDLDGDIYFVSWDPSLIPPRM----------VTPMDYT-----------PAPTE 747
Query: 834 CSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTL 893
LD D+ T+EE+ ++F +Y++N++L
Sbjct: 748 T----LDHDV--------------------------------TIEEVEEYFTNYIVNESL 771
Query: 894 GAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMER 953
G I+ AH+V AD++ KA SS C+ LA L S+AVDF KTG PA +P L KE+PDFME+
Sbjct: 772 GMIANAHVVFADKEDLKAESSPCIELAKLFSIAVDFPKTGVPALIPPELHVKEYPDFMEK 831
Query: 954 EDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESH 1013
DK Y S GV+GKLYR I+ ++ ++A SYD D+ VDG+E ++ A +
Sbjct: 832 LDKVTYESKGVIGKLYREIKKHTPHIKH---FTREVARRSYDTDMIVDGYEDYITEAMAL 888
Query: 1014 KEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEA 1073
K+ Y+ ++ LM++YG +E EI++G + A + + D I L+ ++L+ EA
Sbjct: 889 KDEYDFKLGNLMDHYGIKSEAEIISGCILKMAKNFTKKSD-----ADAIRLAVRSLRKEA 943
Query: 1074 KEWFGS-SCKENEHPQ-----LASAWYHVTYSPSY--C----KERMALLSFPWIVGDILL 1121
+ F S +N H ASAWYHVTY P + C ER +SFPW + + LL
Sbjct: 944 RSRFSEMSLDDNGHGHDASEAKASAWYHVTYHPEFWGCYNEGYERPHFISFPWCIYEKLL 1003
Query: 1122 NIK 1124
IK
Sbjct: 1004 RIK 1006
>gi|113205325|gb|AAT38751.2| RNA-directed RNA polymerase, putative [Solanum demissum]
Length = 1180
Score = 580 bits (1494), Expect = e-162, Method: Compositional matrix adjust.
Identities = 319/705 (45%), Positives = 447/705 (63%), Gaps = 33/705 (4%)
Query: 184 GATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKSIGC 243
G +L +L P+IY+++ + Y KE D WVRTTDF+ + IG
Sbjct: 126 GQNAQFLLIQLFGAPRIYKRLE---------NSCYSFFKETPDDQWVRTTDFAPS-WIGL 175
Query: 244 STSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTT--SEIVPLVKCRPGFNLS 301
S+S + + G+ + IF Y E + ++ L+ G F + S +VP V+ G +
Sbjct: 176 SSSLCLQFRRGVHLPNFQEIFFHYTERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIP 235
Query: 302 HEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALM--VLQKLHKLKSICYDPVSFV 359
+++LF+++SLV + + A D +++ A + L+KL+ LK CYDPV ++
Sbjct: 236 YKILFKISSLVQHGCIPGPALDVYFFRLVDPQRRNVACIEQALEKLYYLKECCYDPVRWL 295
Query: 360 KTQL--HVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFA 417
Q ++ GR P S +D ++ R LVTP K+Y GPE+ SN V++N++
Sbjct: 296 TEQYDGYLKGRQ----PPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYS 351
Query: 418 KYASDFMRVTFVEEDWSKLPANAL--STSIQRGIFSKPYRTKIYSRILTILQDGIVIGDK 475
+ +F+RV+FV+E+W KL + L S GI RT IY RIL+ L+ G VIGDK
Sbjct: 352 EDIDNFLRVSFVDEEWEKLYSTDLLPKASTGNGI-----RTNIYERILSTLRKGFVIGDK 406
Query: 476 HYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQ 535
+EFLAFS+SQLR+NSVWMFAS ++A D+R WMG F++I++V+K AAR+GQ F SSK+
Sbjct: 407 KFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSKE 466
Query: 536 TLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGG 595
TL V ++E+IPDV+V G +Y FSDGIGKIS FAR+VA KCGL +TPSAFQIRYGG
Sbjct: 467 TLSVLRHEIEVIPDVKV--HGTSYVFSDGIGKISADFARRVASKCGLQYTPSAFQIRYGG 524
Query: 596 YKGVIAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDE 655
YKGV+AVD S KLSLR+SM K+ES N L+V WS+ PC+LNR++++LLSTLGVKD+
Sbjct: 525 YKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDD 584
Query: 656 VFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLL 715
V E Q++ + L +L + A + L+ ++ ++ NIL ML GY P+ EP+LSMML
Sbjct: 585 VLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQ 644
Query: 716 SHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFH- 774
+ ++L DL++R RI++P GR ++GC DE+ L YGQVFV+ T S+D F+
Sbjct: 645 TFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNN 704
Query: 775 -RVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNE 833
R + I+KG V+V KNPCLHPGD+RVL AV L VDC++FPQKG+RPHPNE
Sbjct: 705 SRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHH--MVDCVVFPQKGKRPHPNE 762
Query: 834 CSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLE 878
CSG DLDGDI+F+ WD D+IP PM+Y S +DHDVT+E
Sbjct: 763 CSGSDLDGDIYFVCWDQDMIPPRQVQPMEYPPAPSIQLDHDVTIE 807
Score = 216 bits (551), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 113/254 (44%), Positives = 157/254 (61%), Gaps = 11/254 (4%)
Query: 877 LEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPA 936
L+E+ ++F +Y++ND+LG I+ AH+V ADR+PD A S C LA L S+AVDF KTG PA
Sbjct: 906 LQEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPKTGVPA 965
Query: 937 EMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDH 996
E+P L+PKE+PDFM++ DK YIS V+GKL+R D Q S AI++ +A SYD
Sbjct: 966 EIPSQLRPKEYPDFMDKPDKTTYISERVIGKLFRKVKDKAPQASSIAIFTRDVARRSYDA 1025
Query: 997 DLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYG 1056
DLEVDGFE ++ A +K Y+ ++ LM+YYG TE EIL+G + + R
Sbjct: 1026 DLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRRKD--- 1082
Query: 1057 DMKDRILLSAKNLQNEAKEWFGSSCKENEHPQLASAWYHVTYSPSY--CK----ERMALL 1110
+ I ++ + L+ EA+ WF ++ ASAWYHVTY P+Y C +R +
Sbjct: 1083 --AEAISVAVRALRKEARTWFKRRNDIDDMLPKASAWYHVTYHPTYWGCYNQGLKRDHFI 1140
Query: 1111 SFPWIVGDILLNIK 1124
SFPW V D L+ IK
Sbjct: 1141 SFPWCVYDQLIQIK 1154
Score = 41.6 bits (96), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 56/122 (45%), Gaps = 6/122 (4%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKA 64
T+ V P A+ + FLE G +V ALE+ +S SR +VQF K
Sbjct: 4 TIQVYGFPYLLSAEVVKSFLEKHTGYGTVCALEV--KQSKGGSRAFAKVQFVDNISADKI 61
Query: 65 QNLSLNDKLVFNSQNLKISETHSDIVPRPVKAQHRVEDGV-LHVGVMCKEERLRVLQTFE 123
NL+ + +L F S LK E +DIV H DG+ L+ G +++ VL + E
Sbjct: 62 INLA-SKRLYFGSSYLKAWEMKTDIVHLRAYVDHM--DGITLNFGCQISDDKFAVLGSTE 118
Query: 124 GV 125
V
Sbjct: 119 VV 120
>gi|224141893|ref|XP_002324295.1| rna-dependent RNA polymerase [Populus trichocarpa]
gi|222865729|gb|EEF02860.1| rna-dependent RNA polymerase [Populus trichocarpa]
Length = 1200
Score = 579 bits (1493), Expect = e-162, Method: Compositional matrix adjust.
Identities = 365/1008 (36%), Positives = 541/1008 (53%), Gaps = 71/1008 (7%)
Query: 162 CCFKVEILFEDVLETVGFSLDEGATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHIC 221
C FKVE L D+ E + ++ + +L +L P ++ + + + + P D
Sbjct: 193 CDFKVEFLVRDINEIIQYT---ETSCLVLLLQLASAPWVWYRTADDDIEAWVPFDLLDDD 249
Query: 222 KEDFDFFWVRTTDFSVTKSIGCSTSFFWEI--KNGLLASDISNIFPFYKEDKTDLILEEG 279
W+RTTDF+ + +IG S+ I ++G S + + KE + ++ EE
Sbjct: 250 DP-----WIRTTDFTASGAIGRCHSYRVSIPPRHG---SKLRKAVKYLKERRVQVLQEEN 301
Query: 280 EEFCTTSEIVP---LVKCRPGFNLSH------EVLFQLNSLVHNQKVSLVAADAELIQIL 330
P + P F + H EVLF +N+++H + + +L
Sbjct: 302 HRRRIRILDEPDFGMPMSDPFFCIHHKEGIAFEVLFLVNAVMHKGIFNQHQLSNDFFDLL 361
Query: 331 SGLSMETALMVLQKLHKLKSICYDPVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCY 390
E + L+ + + ++ +K L +N + K+L D V+
Sbjct: 362 RNQHTEVNVSALKHICTYRRPVFNAYRRLKAVQEWLLKNPNL--FKNPKQLGD--VVEIR 417
Query: 391 RALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALS---TSIQR 447
R ++TP K YCL PE+E SN V++ + A F+RVTF++E ++ +N L+ I R
Sbjct: 418 RLVITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQRMNSNVLNYYVAPIVR 477
Query: 448 GIFSK--PYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAED 505
I S P +T+I+ R+ +IL +G + + Y FLAFSA+QLR+ S W F+ +S D
Sbjct: 478 DITSNSFPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSANQLRDQSAWFFSEERNISVLD 537
Query: 506 VRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEM-IPDVEVTSDGNTYCFSDG 564
V+ WMG F R+++KCAARMGQ FSS+ T+ VP ++V +PD+E N Y FSDG
Sbjct: 538 VKSWMGKFTN-RNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIE----RNGYVFSDG 592
Query: 565 IGKISLSFARQVAQKCGLS-HTPSAFQIRYGGYKGVIAV--DRNSFRKLSLRRSMLKFES 621
IG I+ AR+VA+K L P A+QIRY G KGV+A + +LSLR SM KF+S
Sbjct: 593 IGIITPDLAREVAEKLKLDIDPPCAYQIRYAGCKGVVACWPGKGDGVRLSLRPSMNKFQS 652
Query: 622 RNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDV 681
+ L + W+ P FLNR+II+LLSTL V D VF MQ+ + L +M +N + A DV
Sbjct: 653 NHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDAVFWKMQETMVSKLNQMFVNSDVAFDV 712
Query: 682 LQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIG 741
L + D N+ ML G++P+ EP+L ML QL DL+ + RI+VP GR L+G
Sbjct: 713 LTA-SCADQGNVAAIMLSAGFKPDREPHLRGMLTCVRAAQLWDLREKTRIFVPSGRWLMG 771
Query: 742 CFDETGILNYGQVFVRVTMTR-EELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDV 800
C DE G+L GQ F++V+ + E+ K + F + ++KG V++ KNPCLHPGDV
Sbjct: 772 CLDELGMLEQGQCFIQVSNSSLEKCFMKHGAKFSEAEKNLQVIKGTVVIAKNPCLHPGDV 831
Query: 801 RVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEP- 859
RVLEAV L DC++FPQKGERPH NE SG DLDGD++F++WD +LIP
Sbjct: 832 RVLEAVDVPGLHH--LYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSKRSW 889
Query: 860 -PMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLH 918
PM Y ++++ V ++I +FF M+ND LGAI AH+VHAD A CL
Sbjct: 890 IPMQYDAAEAKLLARPVNHQDIIEFFAKNMVNDNLGAICNAHVVHADLSEYGATDKNCLT 949
Query: 919 LATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQ 978
LA L + AVDF KTG MP LKPK +PDFM +E+ Y S +LG+LYR D+ +
Sbjct: 950 LAELAATAVDFPKTGKVVSMPPYLKPKMYPDFMGKEEYQSYKSEKILGRLYRQIKDAYDE 1009
Query: 979 -IRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEIL 1037
+ +++ + + YD DLEV G ++ A K Y+ ++N L++ Y E+E++
Sbjct: 1010 DVAASSELNLVPGDIPYDSDLEVVGASDYISDAWDQKCSYDGQLNGLLSQYKVKREEEVV 1069
Query: 1038 TGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSCKENE----------HP 1087
TG++ + Y +R+ G++KDR+ S +L+ E ++ F E E +
Sbjct: 1070 TGHIWSMPKY---SSRKQGELKDRLKHSYNSLKKEFRQIFEKMDLEFEQLEDGEKNKLYE 1126
Query: 1088 QLASAWYHVTYSPSYCKERMAL-----------LSFPWIVGDILLNIK 1124
Q ASAWY V Y P + K+ + L LSF WI D L IK
Sbjct: 1127 QKASAWYQVVYHPHWVKKSLELQDPDGAGTSVMLSFAWIAADYLARIK 1174
>gi|356515444|ref|XP_003526410.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Glycine max]
Length = 1204
Score = 578 bits (1489), Expect = e-162, Method: Compositional matrix adjust.
Identities = 375/1009 (37%), Positives = 539/1009 (53%), Gaps = 71/1009 (7%)
Query: 162 CCFKVEILFEDVLETVGFSLDEGATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHIC 221
C F+V L D+ E ++ D V +L L P ++ + + + P D
Sbjct: 193 CDFQVGFLVRDINEIKRYN-DTSYLV--VLLHLASSPWVWYRTADDDIEESVPFDLLDDD 249
Query: 222 KEDFDFFWVRTTDFSVTKSIGCSTSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEE 281
W+RTTDF+ + +IG + I A + + + L +
Sbjct: 250 DP-----WIRTTDFTPSGAIGRCNFYRISIPPRHGAKLMKAMLYLKGQRVQMQELALKQT 304
Query: 282 FCTTSEIVPLVKCRPGF-------NLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLS 334
T +E V F +++ +++F +N++VH + ++L
Sbjct: 305 LRTLNEPDFGVPMSDAFFYIHFQKDIAFDIMFLVNAIVHKGIFNQHRLSDRFFELLKNQP 364
Query: 335 METALMVLQKLHKLKSICYDPVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALV 394
E + L+ L K +D +K L RN K +S K+L D ++ R ++
Sbjct: 365 KELNVAALKHLCSYKRPVFDATKRLKIVQEWLLRNPKLYQIS--KQLDD--IVEVRRLVI 420
Query: 395 TPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALS---TSIQRGIFS 451
TP K YC+ PE+E SN V++ F + + F+RVTF++E + NAL+ I + I S
Sbjct: 421 TPSKAYCIPPEVELSNRVLRKFREVSDCFLRVTFMDEGMQTINVNALNYYVAPIVKEITS 480
Query: 452 KPY--RTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGW 509
+ RTKIY R+ TIL+ G + Y FLAFS++QLR+ S W FA D++ +D+R W
Sbjct: 481 NSFSQRTKIYKRVKTILEQGFYFCGRKYSFLAFSSNQLRDRSAWFFAE-DKIRCDDIRNW 539
Query: 510 MGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVE-MIPDVEVTSDGNTYCFSDGIGKI 568
MG FN+ R+V+KCAARMGQ FSS+ T+ V +V M+PDVE N Y FSDGIG I
Sbjct: 540 MGKFNQ-RNVAKCAARMGQCFSSTYATVEVAANEVNSMLPDVE----RNNYIFSDGIGVI 594
Query: 569 SLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAV--DRNSFRKLSLRRSMLKFESRNRML 626
+ AR+VA+K L + PSA+QIRY G+KGV+A + +LSLR SM KF+S + +L
Sbjct: 595 THDLAREVAEKLKLDNVPSAYQIRYAGFKGVVASWPAKGDGVRLSLRPSMNKFQSTHNIL 654
Query: 627 NVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLN 686
+ W+ P FLNR+II+LLS LGV DEVF MQ+ L+ L +ML++ + A DVL K +
Sbjct: 655 EICAWTRFQPGFLNRQIITLLSALGVPDEVFWQMQEAMLLKLNQMLVDADIAFDVLTK-S 713
Query: 687 GVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDET 746
+ N ML G+ P EP+L ML S QL L+ + RI+V GR L+G DE+
Sbjct: 714 CAEHGNAAAIMLSCGFSPLTEPHLRGMLTSTRAAQLWGLREKSRIFVSSGRWLMGVLDES 773
Query: 747 GILNYGQVFVRV-TMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEA 805
G+L GQ FV+V T + E SK S F + +VKG V++ KNPCLHPGDVRVLEA
Sbjct: 774 GVLEQGQCFVQVSTPSLENCFSKHGSRFSETKN-LHVVKGFVIIAKNPCLHPGDVRVLEA 832
Query: 806 VYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEP--PMDY 863
V L + DC++FPQKG+RPH NE SG DLDGD++F++WD +LIP PM+Y
Sbjct: 833 VDAPDLHHLN--DCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMEY 890
Query: 864 TGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLH 923
+ S++ V +I +FFV M+N+ LGAI AH+VHAD A KC+HLA L
Sbjct: 891 APQESKLKTRQVMTRDIIEFFVRNMVNEHLGAICNAHVVHADSSDYGALDEKCIHLAELA 950
Query: 924 SMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNA 983
+ AVDF KTG MP LKPK +PDFM +E Y S +LG+LYR D+ +
Sbjct: 951 ATAVDFPKTGKLVTMPPHLKPKLYPDFMGKERHQSYRSKKILGRLYRRIKDAYDEDIDAP 1010
Query: 984 IWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRN 1043
+ + YD DLEV G F+ A K Y+ +++ L+ Y E+E++TG + +
Sbjct: 1011 YLNFVTGDIPYDKDLEVPGSADFIADAWEQKCSYDGQLSGLLGQYKVKREEEVVTGQIWS 1070
Query: 1044 RASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWF-------GSSCKENE---HPQLASAW 1093
Y ++R+ G++K+R+ S L+ E + F G +E + + Q ASAW
Sbjct: 1071 MPKY---NSRKQGELKERLKHSYSALKKEFRHTFEKLNSDVGELSEEEKNLFYEQKASAW 1127
Query: 1094 YHVTYSPSYCKERMAL------------------LSFPWIVGDILLNIK 1124
Y VTY P + K+ + L LSFPWI D L K
Sbjct: 1128 YQVTYHPEWVKKSLDLQDKSSENQEADSLGSTVMLSFPWIAVDYLARTK 1176
>gi|147853646|emb|CAN82339.1| hypothetical protein VITISV_039922 [Vitis vinifera]
Length = 654
Score = 577 bits (1488), Expect = e-161, Method: Compositional matrix adjust.
Identities = 309/646 (47%), Positives = 417/646 (64%), Gaps = 32/646 (4%)
Query: 494 MFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVT 553
MFAS ++A ++R WMG F++IR+V+K AAR+GQ FSSSK+TL V ++E IPD+E+
Sbjct: 1 MFASRPGLTAAEIRSWMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKDEIENIPDIEIH 60
Query: 554 SDGNTYCFSDGIGKISLSFARQVAQKCGL-SHTPSAFQIRYGGYKGVIAVDRNSFRKLSL 612
TY FSDGIGKIS A +VA KCG S TPSAFQIRYGGYKGV+AVD S RKLSL
Sbjct: 61 KXRTTYVFSDGIGKISPQLAHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRKLSL 120
Query: 613 RRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKML 672
R+SM K+ES N L+V WS+ P FLNR++I+LLSTLGVKD VFE Q+ + L +L
Sbjct: 121 RKSMFKYESDNTNLDVLAWSKYQPSFLNRQLITLLSTLGVKDHVFEKKQRAAVDQLDTIL 180
Query: 673 INREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIY 732
+ AA + L+ ++ ++ N+L +ML+ GY+P+ EP+LSMML + +L +L+++ RI+
Sbjct: 181 KDPVAAQEALELMSPGENTNVLKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIF 240
Query: 733 VPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTS--IVKGKVLVT 790
VP GR ++GC DET L YG+VFV+++ T D F I++GK++V
Sbjct: 241 VPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFRGSGSHHDNFILEGKIVVA 300
Query: 791 KNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDN 850
KNPCLHPGDVRVL AV L VDC++FPQKG+RPHPNECSG DLDGDI+F+ WD
Sbjct: 301 KNPCLHPGDVRVLXAVNVPTLHH--MVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDR 358
Query: 851 DLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDK 910
DLIP + PMDYT ++ E+ ++F +Y++ND+LG I+ AH V AD++ DK
Sbjct: 359 DLIPPQQINPMDYTPAPTK---------EVEEYFTNYIVNDSLGIIANAHTVFADKEYDK 409
Query: 911 ARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYR 970
A C LA L S+AVDF KTG PAE+P L+ KE+PDFME+ DKP Y S V+GKL+R
Sbjct: 410 AYCDPCTELAKLFSIAVDFPKTGVPAEIPRNLRVKEYPDFMEKADKPTYESQSVIGKLFR 469
Query: 971 ATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGA 1030
D + ++ +A SYD D+EV GFE ++ A +K Y+ ++ LM+YYG
Sbjct: 470 EVKDIAPHNCNIRSFTRDVARQSYDPDMEVVGFEDYVSDAFYYKSEYDYKLGNLMDYYGI 529
Query: 1031 STEDEILTGN-LRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSCKENEHP-- 1087
TE EIL+G+ +R S+ +R + + I L+ K+L+ EA+ WF E +
Sbjct: 530 KTESEILSGSIMRMSKSFDRRKD------AEAIGLAVKSLRKEARTWFNKMGSETDSEAD 583
Query: 1088 ---QLASAWYHVTYSPSY--C----KERMALLSFPWIVGDILLNIK 1124
ASAWYHVTY P Y C +R LSFPW V D L++ K
Sbjct: 584 DVYAKASAWYHVTYHPDYWGCYNEGMDRDHFLSFPWCVYDKLIHTK 629
>gi|147860348|emb|CAN82568.1| hypothetical protein VITISV_040047 [Vitis vinifera]
Length = 697
Score = 576 bits (1485), Expect = e-161, Method: Compositional matrix adjust.
Identities = 314/645 (48%), Positives = 426/645 (66%), Gaps = 21/645 (3%)
Query: 494 MFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVT 553
MFAS ++A D+R MG F++IR+V+K AAR+GQ FSSSK+TL V ++E+IPD+E+
Sbjct: 1 MFASRPGLTAADIRSRMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKHEIEIIPDIEIH 60
Query: 554 SDGNTYCFSDGIGKISLSFARQVAQKCGL-SHTPSAFQIRYGGYKGVIAVDRNSFRKLSL 612
DG TY FSDGIGKIS A +VA KCG S TPSAFQIRYGGYKGV+AVD S RKLSL
Sbjct: 61 RDGTTYVFSDGIGKISAELAHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRKLSL 120
Query: 613 RRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKML 672
R+SM K+ES N L+V WS+ PCFLNR++I+LLSTLGVKD VFE Q++ + L +L
Sbjct: 121 RKSMFKYESENTNLDVLSWSKYRPCFLNRQLITLLSTLGVKDHVFEKKQREAVDQLDTIL 180
Query: 673 INREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIY 732
+ A + L+ ++ ++ NIL +ML+ GY+P+ EP+LSMML + +L +L+++ RI+
Sbjct: 181 KDPLRAQEALELMSPGENTNILKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIF 240
Query: 733 VPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTS--IVKGKVLVT 790
VP GR ++GC DET L YG+VFV+++ T D F+ I++GKV+V
Sbjct: 241 VPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFYGSGSHHDNFILEGKVVVA 300
Query: 791 KNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDN 850
KNPCLHPGDVR+L AV L VDC++FPQKG RPHP+ECSG DLDGDI+F+ WD+
Sbjct: 301 KNPCLHPGDVRILSAVDVPALHHM--VDCVVFPQKGMRPHPDECSGSDLDGDIYFVCWDH 358
Query: 851 DLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDK 910
DLIP PMDYT ++++DHDV +EE+ ++F +Y+ ND LG I+ AH V AD++ DK
Sbjct: 359 DLIPPRQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIGNDKLGIIANAHTVFADKEYDK 418
Query: 911 ARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYR 970
A C LA L S+A++F KTG PAE+P L KE+PDFME+ +KP Y S V+GKL+R
Sbjct: 419 ALCPPCKELAKLFSIALEFPKTGVPAEIPFHLHVKEYPDFMEKANKPTYESQSVIGKLFR 478
Query: 971 ATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGA 1030
D ++ +A SYD D+EVDGFE ++ A +K Y+ ++ +LM+ YG
Sbjct: 479 EVKDVAPHNYDIRSFTRDVAMQSYDADMEVDGFEDYVRDAFYYKSQYDFKLGSLMDCYGI 538
Query: 1031 STEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWF-----GSSCKENE 1085
TE EIL+G+L + D R+ + I L+ ++L+ EA+ WF G+ ++
Sbjct: 539 RTESEILSGSLMKMSKSF--DKRKDAEA---IALAVRSLRKEARTWFNKMGSGTYAGADD 593
Query: 1086 HPQLASAWYHVTYSPSY--C-KERM---ALLSFPWIVGDILLNIK 1124
+ASAWYHVTY P Y C E M LSFPW V D L+ IK
Sbjct: 594 VYAIASAWYHVTYHPYYWGCYNEGMYHDHFLSFPWCVYDKLIQIK 638
>gi|356507732|ref|XP_003522618.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Glycine max]
Length = 1204
Score = 574 bits (1480), Expect = e-161, Method: Compositional matrix adjust.
Identities = 373/1009 (36%), Positives = 540/1009 (53%), Gaps = 71/1009 (7%)
Query: 162 CCFKVEILFEDVLETVGFSLDEGATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHIC 221
C F+V L D+ E ++ D V +L L P ++ + + + P D
Sbjct: 193 CDFQVGFLVRDINEIRRYN-DTSYLV--VLLHLASSPWVWYRTADDDIEESVPFDLLDDD 249
Query: 222 KEDFDFFWVRTTDFSVTKSIGCSTSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEE 281
W+RTTDF+ + +IG + I A + + + L +
Sbjct: 250 DP-----WIRTTDFTPSGAIGRCNFYRISIPPRHGAKLMKAMLYLKGQRVQIQELPLKQT 304
Query: 282 FCTTSEIVPLVKCRPGF-------NLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLS 334
T +E + F +++ +++F +N++VH + ++L
Sbjct: 305 LRTQNEPDFGMPMSDAFFYVHFQKDIAFDIMFLVNAIVHKGIFNQHRLSDRFFELLRNQP 364
Query: 335 METALMVLQKLHKLKSICYDPVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALV 394
E + L+ L K +D +K L RN K +S K+L D ++ R +V
Sbjct: 365 KELNVAALKHLCSYKRPVFDATKRLKIVQEWLLRNPKLYQIS--KQLDD--IVEVRRLVV 420
Query: 395 TPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALS---TSIQRGIFS 451
TP K YC+ PE+E SN V++ F + + F+RVTF++E + NAL+ I + I S
Sbjct: 421 TPSKAYCIPPEVELSNRVLRKFREVSDCFLRVTFMDEGMQTINVNALNYYVAPIVKEITS 480
Query: 452 KPY--RTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGW 509
+ +TKIY R+ TIL++G + Y FLAFS++QLR+ S W FA D++ +D+R W
Sbjct: 481 NSFSQKTKIYKRVKTILEEGFYFCGRKYSFLAFSSNQLRDRSAWFFAE-DKIRCDDIRNW 539
Query: 510 MGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVE-MIPDVEVTSDGNTYCFSDGIGKI 568
MG FN+ R+V+KCAARMGQ FSS+ T+ V +V M+PDVE N Y FSDGIG I
Sbjct: 540 MGKFNQ-RNVAKCAARMGQCFSSTYATVEVAANEVNSMLPDVE----RNNYIFSDGIGVI 594
Query: 569 SLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAV--DRNSFRKLSLRRSMLKFESRNRML 626
+ AR+VA+K L + PSA+QIRY G+KGV+A + +LSLR SM KF+S + +L
Sbjct: 595 THDLAREVAEKLKLDNVPSAYQIRYAGFKGVVASWPAKGDGVRLSLRPSMNKFQSTHNIL 654
Query: 627 NVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLN 686
+ W+ P FLNR+II+LLS LGV DE+F MQ+ L+ L +ML++ + A DVL K +
Sbjct: 655 EICAWTRFQPGFLNRQIITLLSALGVPDEIFWQMQEAMLLKLNQMLVDADIAFDVLTK-S 713
Query: 687 GVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDET 746
+ N ML G+ P EP+L ML S QL L+ + RI+V GR L+G DE
Sbjct: 714 CAEHGNAAAIMLSCGFSPLTEPHLRGMLTSTRAAQLWGLREKSRIFVSSGRWLMGVLDEL 773
Query: 747 GILNYGQVFVRV-TMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEA 805
G+L GQ FV+V T + E SK S F + +VKG V++ KNPCLHPGDVRVLEA
Sbjct: 774 GVLEQGQCFVQVSTPSLENCFSKHGSRFSETKN-LHVVKGFVVIAKNPCLHPGDVRVLEA 832
Query: 806 VYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEP--PMDY 863
V L + DC++FPQKG+RPH NE SG DLDGD++F++WD +LIP PM+Y
Sbjct: 833 VDAPDLHHLN--DCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMEY 890
Query: 864 TGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLH 923
+ S+++ V +I +FFV M+N+ LGAI AH+VHAD A KC+HLA L
Sbjct: 891 APQESKLLTRQVMTRDIIEFFVRNMVNEHLGAICNAHVVHADSSDYGALDEKCIHLAELA 950
Query: 924 SMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNA 983
+ AVDF KTG MP LKPK +PDFM +E Y S +LG+LYR D+ +
Sbjct: 951 ATAVDFPKTGKLVTMPPHLKPKLYPDFMGKERHQSYRSNKILGRLYRHIKDAYDEDIEAP 1010
Query: 984 IWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRN 1043
+ + YD DLEV G F+ A K Y+ +++ L+ Y E+E++TG + +
Sbjct: 1011 YLNFVTGDIPYDKDLEVPGSADFIADAWEQKCSYDGQLSGLIGQYKVKREEEVVTGQIWS 1070
Query: 1044 RASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWF-------GSSCKENE---HPQLASAW 1093
Y ++R+ G++K+R+ S L+ E + F G +E + + Q ASAW
Sbjct: 1071 MPKY---NSRKQGELKERLKHSYSALKKEFRYTFEKLNSDVGELSEEEKNLLYEQKASAW 1127
Query: 1094 YHVTYSPSYCKERMAL------------------LSFPWIVGDILLNIK 1124
Y VTY P + K+ + L LSFPWI D L K
Sbjct: 1128 YQVTYHPEWVKKSLDLQDKSSENQEADSLGSTVMLSFPWIAVDYLARTK 1176
>gi|449499234|ref|XP_004160762.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Cucumis sativus]
Length = 1197
Score = 571 bits (1471), Expect = e-160, Method: Compositional matrix adjust.
Identities = 356/1010 (35%), Positives = 548/1010 (54%), Gaps = 77/1010 (7%)
Query: 162 CCFKVEILFEDVLETVGFSLDEGATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHIC 221
C +K+E + D+ + ++ D V IL +L P I+ + + +A P D
Sbjct: 192 CDYKMEFIVRDINQITRYT-DTSCYV--ILLQLTSSPCIWYRTADDDIAKLVPYDLLDDD 248
Query: 222 KEDFDFFWVRTTDFSVTKSIGCSTSFFWEI--KNGLLASDISNIFPFYKE--------DK 271
W+RTTDF+++ +IG +F + + G+ ++N + KE ++
Sbjct: 249 DP-----WIRTTDFTISGAIGRCNTFRVSVPPRYGI---KLNNAMNYLKEQRVHQVSLNR 300
Query: 272 TDLILEEGEEFCTTSEIVPLVKCRPGFNLSHEVLFQLNSLVHNQKVSLVAADAELIQILS 331
IL E + ++ + + ++S E+LF +N+++H ++ +L
Sbjct: 301 PPKILNEPDYGVQMTDHFFCILYKK--DISFEILFLVNAVMHKGIINQHQMSDRFFDLLR 358
Query: 332 GLSMETALMVLQKLHKLKSICYDPVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYR 391
E L L +H + D +K L +N L K L+D ++ R
Sbjct: 359 NQPNEVNLAALSHIHAFRRPVLDACKKLKLVQEWLLKN--PTLLKRSKELVD--IVEIRR 414
Query: 392 ALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALS---TSIQRG 448
++TP K YC PE+E SN V++ + A F+RVTF++E K+ ++ + I +
Sbjct: 415 LVITPSKAYCFPPEVELSNRVLRRYKDVADRFLRVTFMDEGMKKINSHVYTYYVAPIVKE 474
Query: 449 IFSK--PYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDV 506
I S P +TKI++R+ IL+ G + + Y FLA+S++QLR+ S W FA +S + +
Sbjct: 475 ITSSSFPQKTKIFARMKHILKHGFHLCGRKYSFLAYSSNQLRDQSAWFFAECKSISVDAI 534
Query: 507 RGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEM-IPDVEVTSDGNTYCFSDGI 565
GWMG F ++V+KCAAR+GQ FSS+ T+ VP V + DVE N Y FSDGI
Sbjct: 535 LGWMGKFTN-KNVAKCAARIGQCFSSTYATIEVPRNMVNHDLSDVE----RNGYVFSDGI 589
Query: 566 GKISLSFARQVAQKCGLSHTPS-AFQIRYGGYKGVIAV--DRNSFRKLSLRRSMLKFESR 622
G I+ A++VA K + +P A+QIRY GYKGV+A + +L+LR SM KFES
Sbjct: 590 GTITPDLAQEVADKLKMDGSPPCAYQIRYAGYKGVVATWPSKKDGIRLALRPSMNKFESN 649
Query: 623 NRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVL 682
+R+L + W+ P FLNR+II+LLSTL V DE+F +MQ+ + L +M+ + + A +VL
Sbjct: 650 HRILEICSWTRFQPGFLNRQIITLLSTLSVPDEIFWSMQETMISKLDRMITDTDVAFEVL 709
Query: 683 QKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGC 742
+ + N ML G+EP EP+L ML+ QL L+ + RI+V +GR +GC
Sbjct: 710 TA-SCAEQGNAAAIMLSAGFEPRTEPHLRGMLMCIRAAQLWGLREKARIFVTEGRWCMGC 768
Query: 743 FDETGILNYGQVFVRV-TMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVR 801
FDE+G+L GQ F++V T E+ SK S F + ++V+G V++ KNPCLHPGDVR
Sbjct: 769 FDESGVLQEGQCFIQVSTPLLEKCFSKHGSLFAETKNNLTVVRGTVVIAKNPCLHPGDVR 828
Query: 802 VLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETE--P 859
+LEAV +L DC++FP+ GERPH NE SG DLDGD++F +WD +LIP + P
Sbjct: 829 ILEAVDAPELHH--LYDCLVFPRNGERPHTNEASGSDLDGDLYFTTWDGNLIPPSKKSWP 886
Query: 860 PMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHL 919
PM+Y + + +T +I +FF MIN++LG I AH+VHADR A C+ L
Sbjct: 887 PMEYAPAEVKTLQRKITRWDIMEFFAKNMINESLGTICNAHVVHADRSKHGALDENCIQL 946
Query: 920 ATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQI 979
+ L + AVDF KTG MP LKPK +PDFM +E Y S +LGK+YR D+
Sbjct: 947 SELAATAVDFPKTGKLVTMPPHLKPKLYPDFMGKEATQSYKSTKILGKMYRRIRDAYDD- 1005
Query: 980 RSNAIWSEKI----AEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDE 1035
+ I S ++ + YD DLEV G E F+ A K Y+ +++ L+ Y + E+E
Sbjct: 1006 -DDMITSRELNFTPGDVHYDVDLEVAGAEDFIAEAWDQKCSYDGQLSGLLGQYKVNREEE 1064
Query: 1036 ILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGS--------SCKENE-- 1085
I+TG++ + Y+ +R+ G++K+++ S L+ + ++ F + +C E
Sbjct: 1065 IVTGHIWSMPKYV---SRKQGELKEKLKHSYSTLKKDFRQVFENLGPEFEQLTCDERNAL 1121
Query: 1086 HPQLASAWYHVTYSPSYCK-----------ERMALLSFPWIVGDILLNIK 1124
+ + ASAWY V Y P++ K E + +LSFPWI D L IK
Sbjct: 1122 YEKKASAWYQVAYHPTWLKKSLELREPDAPEAVPMLSFPWIAADYLARIK 1171
>gi|449441914|ref|XP_004138727.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Cucumis sativus]
gi|316989907|gb|ADU77019.1| RNA-dependent RNA polymerase 6 [Cucumis sativus]
Length = 1197
Score = 571 bits (1471), Expect = e-160, Method: Compositional matrix adjust.
Identities = 356/1010 (35%), Positives = 548/1010 (54%), Gaps = 77/1010 (7%)
Query: 162 CCFKVEILFEDVLETVGFSLDEGATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHIC 221
C +K+E + D+ + ++ D V IL +L P I+ + + +A P D
Sbjct: 192 CDYKMEFIVRDINQITRYT-DTSCYV--ILLQLTASPCIWYRTADDDIAKLVPYDLLDDD 248
Query: 222 KEDFDFFWVRTTDFSVTKSIGCSTSFFWEI--KNGLLASDISNIFPFYKE--------DK 271
W+RTTDF+++ +IG +F + + G+ ++N + KE ++
Sbjct: 249 DP-----WIRTTDFTISGAIGRCNTFRVSVPPRYGI---KLNNAMNYLKEQRVHQVSLNR 300
Query: 272 TDLILEEGEEFCTTSEIVPLVKCRPGFNLSHEVLFQLNSLVHNQKVSLVAADAELIQILS 331
IL E + ++ + + ++S E+LF +N+++H ++ +L
Sbjct: 301 PPKILNEPDYGVQMTDHFFCILYKK--DISFEILFLVNAVMHKGIINQHQMSDRFFDLLR 358
Query: 332 GLSMETALMVLQKLHKLKSICYDPVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYR 391
E L L +H + D +K L +N L K L+D ++ R
Sbjct: 359 NQPNEVNLAALSHIHAFRRPVLDACKKLKLVQEWLLKN--PTLLKRSKELVD--IVEIRR 414
Query: 392 ALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALS---TSIQRG 448
++TP K YC PE+E SN V++ + A F+RVTF++E K+ ++ + I +
Sbjct: 415 LVITPSKAYCFPPEVELSNRVLRRYKDVADRFLRVTFMDEGMKKINSHVYTYYVAPIVKE 474
Query: 449 IFSK--PYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDV 506
I S P +TKI++R+ IL+ G + + Y FLA+S++QLR+ S W FA +S + +
Sbjct: 475 ITSSSFPQKTKIFARMKHILKHGFHLCGRKYSFLAYSSNQLRDQSAWFFAECKSISVDAI 534
Query: 507 RGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEM-IPDVEVTSDGNTYCFSDGI 565
GWMG F ++V+KCAAR+GQ FSS+ T+ VP V + DVE N Y FSDGI
Sbjct: 535 LGWMGKFTN-KNVAKCAARIGQCFSSTYATIEVPRNMVNHDLSDVE----RNGYVFSDGI 589
Query: 566 GKISLSFARQVAQKCGLSHTPS-AFQIRYGGYKGVIAV--DRNSFRKLSLRRSMLKFESR 622
G I+ A++VA K + +P A+QIRY GYKGV+A + +L+LR SM KFES
Sbjct: 590 GTITPDLAQEVADKLKMDGSPPCAYQIRYAGYKGVVATWPSKKDGIRLALRPSMNKFESN 649
Query: 623 NRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVL 682
+R+L + W+ P FLNR+II+LLSTL V DE+F +MQ+ + L +M+ + + A +VL
Sbjct: 650 HRILEICSWTRFQPGFLNRQIITLLSTLSVPDEIFWSMQETMISKLDRMITDTDVAFEVL 709
Query: 683 QKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGC 742
+ + N ML G+EP EP+L ML+ QL L+ + RI+V +GR +GC
Sbjct: 710 TA-SCAEQGNAAAIMLSAGFEPRTEPHLRGMLMCIRAAQLWGLREKARIFVTEGRWCMGC 768
Query: 743 FDETGILNYGQVFVRV-TMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVR 801
FDE+G+L GQ F++V T E+ SK S F + ++V+G V++ KNPCLHPGDVR
Sbjct: 769 FDESGVLQEGQCFIQVSTPLLEKCFSKHGSLFAETKNNLTVVRGTVVIAKNPCLHPGDVR 828
Query: 802 VLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETE--P 859
+LEAV +L DC++FP+ GERPH NE SG DLDGD++F +WD +LIP + P
Sbjct: 829 ILEAVDAPELHH--LYDCLVFPRNGERPHTNEASGSDLDGDLYFTTWDGNLIPPSKKSWP 886
Query: 860 PMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHL 919
PM+Y + + +T +I +FF MIN++LG I AH+VHADR A C+ L
Sbjct: 887 PMEYAPAEVKTLQRKITRWDIMEFFAKNMINESLGTICNAHVVHADRSKHGALDENCIQL 946
Query: 920 ATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQI 979
+ L + AVDF KTG MP LKPK +PDFM +E Y S +LGK+YR D+
Sbjct: 947 SELAATAVDFPKTGKLVTMPPHLKPKLYPDFMGKEATQSYKSTKILGKMYRRIRDAYDD- 1005
Query: 980 RSNAIWSEKI----AEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDE 1035
+ I S ++ + YD DLEV G E F+ A K Y+ +++ L+ Y + E+E
Sbjct: 1006 -DDMITSRELNFTPGDVHYDVDLEVAGAEDFIAEAWDQKCSYDGQLSGLLGQYKVNREEE 1064
Query: 1036 ILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGS--------SCKENE-- 1085
I+TG++ + Y+ +R+ G++K+++ S L+ + ++ F + +C E
Sbjct: 1065 IVTGHIWSMPKYV---SRKQGELKEKLKHSYSTLKKDFRQVFENLGPEFEQLTCDERNAL 1121
Query: 1086 HPQLASAWYHVTYSPSYCK-----------ERMALLSFPWIVGDILLNIK 1124
+ + ASAWY V Y P++ K E + +LSFPWI D L IK
Sbjct: 1122 YEKKASAWYQVAYHPTWLKKSLELREPDAPEAVPMLSFPWIAADYLARIK 1171
>gi|242093792|ref|XP_002437386.1| hypothetical protein SORBIDRAFT_10g025950 [Sorghum bicolor]
gi|241915609|gb|EER88753.1| hypothetical protein SORBIDRAFT_10g025950 [Sorghum bicolor]
Length = 1239
Score = 567 bits (1461), Expect = e-158, Method: Compositional matrix adjust.
Identities = 370/1005 (36%), Positives = 540/1005 (53%), Gaps = 70/1005 (6%)
Query: 162 CC-FKVEILFEDVLETVGFSLDEGATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHI 220
CC K+E +V E + F D+ ++ +L P +Y + +G V + P +H+
Sbjct: 245 CCDIKLEFSVSNVAEVLVFEADDS-----LILRLSAAPLVYYRTAGDDVQDRVP---FHL 296
Query: 221 CKEDFDFFWVRTTDFSVTKSIG-CST------SFFWEIKNGLLASDISNIFPFYKEDKTD 273
D D W+RTTD + + +IG CS + FW L P D
Sbjct: 297 IDTDDDP-WIRTTDVTPSGAIGRCSAYRVSFGAMFWPTMRTALKYMERQGVPVDVRDSRW 355
Query: 274 L---ILEEGEEFCTTSEIVPLVKCRPGFNLSHEVLFQLNSLVHNQKVSLVAADAELIQIL 330
L +LEE +F + V R +L L+ +N L+HN+ V+L +E +L
Sbjct: 356 LGFTVLEE-PDFGRPMQHV-FFSLRQDEDLWFPELYLVNVLIHNRIVNLHQLTSEFFSLL 413
Query: 331 SGLSMETALMVLQKLHKLK-SICYDPVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSC 389
+ + L +L K +C +P S +K +N + S ++L D N
Sbjct: 414 RRAHEDVNVAALTELFGAKLQVCSNPCSRLKNAQDRATKNLNLLFHGSSRKLGDFNA-EV 472
Query: 390 YRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQ--- 446
R ++TP + YC+ P+LE SN V +++ + + F+RV FV+E L ANALS +
Sbjct: 473 RRLIITPTRTYCMPPQLERSNRVTRHYHQLSDRFLRVAFVDEGMLPLNANALSLQVVPLV 532
Query: 447 RGIFSKPYR--TKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAE 504
+ + S P + T +Y R+ TIL +G + + Y FLAFS SQL+ S W FA + +
Sbjct: 533 KDLMSSPTQQMTTVYRRVQTILTEGFTMCGRKYSFLAFSTSQLKQKSAWFFAEDGTTTVA 592
Query: 505 DVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVV-PVQDVEMIPDVEVTSDGNTYCFSD 563
++ WMG F IR+ +K AARMG F+SS T+ + P + E + DV N Y FSD
Sbjct: 593 SMKEWMGQF-PIRNPAKHAARMGLCFTSSYATVTMQPCEVDEYLEDVI----HNGYNFSD 647
Query: 564 GIGKISLSFARQVAQKCGLS--HTPSAFQIRYGGYKGVIAVD--RNSFRKLSLRRSMLKF 619
GIG I+ A +VA++ L+ + PS +QIRY G+KGV+AV +N ++SLR SM KF
Sbjct: 648 GIGMITQDLALEVAKRLQLTDIYAPSTYQIRYAGFKGVVAVSTGQNDGMRMSLRPSMRKF 707
Query: 620 ESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAAL 679
ES + +L V W++ P FLNR+II+LL++LGV D VF MQ+ L L ++L + A
Sbjct: 708 ESAHSVLEVLSWTKFQPSFLNRQIITLLTSLGVPDAVFWQMQEAMLGNLKRILSDNNVAY 767
Query: 680 DVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLL 739
+V+ + + + ML G+ P EP+L MLL+ +Q+ L + RI+VPKGR L
Sbjct: 768 EVVTN-SCPEHGSTAGLMLSAGFAPATEPHLRAMLLAICASQMQGLLDKTRIFVPKGRWL 826
Query: 740 IGCFDETGILNYGQVFVRVTMTREE--LESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHP 797
+GC DE GIL GQ F++V+ ++ F + I+ G V++ KNPCLHP
Sbjct: 827 MGCLDELGILEQGQCFIQVSTPSLNNCYVNRGSIFPSEYKNNAEIIVGTVVMAKNPCLHP 886
Query: 798 GDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPC-- 855
GDVR+LEAV +L VDC++FPQKGERPH NE SG DLDGDI+F++WD +L+P
Sbjct: 887 GDVRILEAVDVPELHH--LVDCLVFPQKGERPHANEASGSDLDGDIYFVTWDENLVPPGR 944
Query: 856 ETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSK 915
++ PMDY +++ + +V +I F+++ M+ND LG I AH+VHADR D A K
Sbjct: 945 QSGTPMDYFPAKTKQLPREVHQSDIIDFYLESMVNDNLGRICNAHVVHADRSDDGAMDPK 1004
Query: 916 CLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDS 975
C+ LA L ++AVD AKTG MP +L PKE+PDFM + D Y S +LG+LYR S
Sbjct: 1005 CIQLAKLAAIAVDSAKTGEIVRMPPSLSPKEYPDFMGKGDAISYKSKKILGRLYR----S 1060
Query: 976 IMQIRSNAIWSEKIA---EASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGAST 1032
I++ + S+ E YD DLEV G +FL A K +YE ++N L++ YG +
Sbjct: 1061 ILRENGDDFVSQGTCISNETPYDIDLEVPGALSFLEDAWQCKCLYEAQLNTLLSQYGLRS 1120
Query: 1033 EDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGS------SCKENEH 1086
E E++TG + Y N+ +K+RI + L E + F S K +
Sbjct: 1121 EAELVTGEIWPLVGY----NKYQYQLKERINYAYSKLHQEFRSIFESIDISYCDNKNLAY 1176
Query: 1087 PQLASAWYHVTYSPSYCKER-------MALLSFPWIVGDILLNIK 1124
ASAWY VTY P + + R A LSF WI D L IK
Sbjct: 1177 EMKASAWYQVTYHPEFIRLREPDDEKTPARLSFAWIAVDYLAQIK 1221
>gi|242093794|ref|XP_002437387.1| hypothetical protein SORBIDRAFT_10g025970 [Sorghum bicolor]
gi|241915610|gb|EER88754.1| hypothetical protein SORBIDRAFT_10g025970 [Sorghum bicolor]
Length = 1251
Score = 564 bits (1453), Expect = e-157, Method: Compositional matrix adjust.
Identities = 372/1015 (36%), Positives = 545/1015 (53%), Gaps = 86/1015 (8%)
Query: 162 CC-FKVEILFEDVLETVGFSLDEGATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHI 220
CC KVE DV E + F D+ +L +L P +Y + +G V + P +H
Sbjct: 262 CCDVKVEFSVADVAEVLAFEADDS-----LLLRLSAAPLVYYRTAGDDVHDRVP---FHQ 313
Query: 221 CKEDFDFFWVRTTDFSVTKSIG-CST---SF---FWEIKNGLLASDISNIFPFYKED--- 270
D D W+RTTD + + +IG CS SF FW L P D
Sbjct: 314 IDVDDDP-WIRTTDVTPSGAIGRCSAYRVSFAARFWPTMRAALEYMKKQGVPVDVCDSRC 372
Query: 271 KTDLILEEGEEFCTTSEIVPLVKCRPGFNLSHEVLFQLNSLVHNQKVSLVAADAELIQIL 330
+ +LEE + ++ R L L+ +N L+HN V+ +E +L
Sbjct: 373 RGVTVLEEPDFGRPMLDV--FFSLRHDEGLRFPELYLVNVLIHNGIVNPHQLTSEFFSLL 430
Query: 331 SGLSMETALMVLQKLH--KLKSICYDPVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMS 388
+ + L +L KL +C DP S +K +N + SS ++ D+NV
Sbjct: 431 RRAQEDVNVAALTELFGTKLHQVCNDPCSRLKNAQVRAAKNLNLLSNSSSRKFGDYNVFE 490
Query: 389 CYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRG 448
R ++TP + YC+ P++E SN V +++ + + F+RVTFV+E LP N+ + S+
Sbjct: 491 VRRLIITPTRAYCMPPQVERSNRVTRHYRQVSDRFLRVTFVDE--GMLPLNSHALSLHVV 548
Query: 449 IFSK-------PYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEV 501
F K T +Y R+ TIL +G + + Y FLAFS SQL+ S W FA +
Sbjct: 549 PFVKDSMSSSSQQMTTVYRRVQTILTEGFTMCGRKYSFLAFSTSQLKQKSAWFFAEDGTT 608
Query: 502 SAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVV-PVQDVEMIPDVEVTSDGNTYC 560
+ ++ WMG F IR+ +K AARMG F+SS T+ + P + E + DV N Y
Sbjct: 609 TVASMKEWMGQF-PIRNPAKHAARMGLCFTSSYATVTMQPCEVNEYLEDVI----HNGYN 663
Query: 561 FSDGIGKISLSFARQVAQKCGLS--HTPSAFQIRYGGYKGVIAVD---RNSFRKLSLRRS 615
FSDGIG I+ A +VA++ L+ + PSA+QIRY G+KGV+AV + R +SLR S
Sbjct: 664 FSDGIGIITQDLALEVAKRLPLTDIYAPSAYQIRYAGFKGVVAVSPRHNDGMRMMSLRPS 723
Query: 616 MLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINR 675
M KFES + ++ V W++ P FLNR+II+LL++LGV D+VF MQ+ L L ++L N
Sbjct: 724 MRKFESVHPVIEVVSWTKFQPAFLNRQIITLLTSLGVPDDVFWQMQEAMLGNLKRILSNT 783
Query: 676 EAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPK 735
+ A ++ + + + ML G+ P EP+L MLL+ +Q+ L + I+VPK
Sbjct: 784 DVAYKIVTS-SCPEHGSTAGLMLTAGFAPATEPHLRAMLLAICASQMKGLLDKTWIFVPK 842
Query: 736 GRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHR-------VDDKTSIVKGKVL 788
GR L+GC DE GIL GQ F+RV+ S + + +R + I+ G V+
Sbjct: 843 GRWLMGCLDELGILEQGQCFIRVSTP-----SLNNHYMNRGSISPSEYKNNAEIIVGTVV 897
Query: 789 VTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISW 848
+ KNPCLHPGDVR+LEAV +L VDC++FP+KGERPH NE SG DLDGD++F++W
Sbjct: 898 MAKNPCLHPGDVRILEAVDVPELHH--LVDCLVFPKKGERPHSNEASGSDLDGDVYFVTW 955
Query: 849 DNDLIPC--ETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADR 906
D +L+P ++ PMDY+ +S+ + +V ++ F+++ M+ND LG I AH+ HADR
Sbjct: 956 DENLVPPGRKSCTPMDYSPSKSKQLPREVHQQDTIDFYLESMVNDNLGRICNAHVAHADR 1015
Query: 907 DPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLG 966
D A +KC+ LA L ++AVD AKTG +MP +L PKE+PDFM +ED Y S +LG
Sbjct: 1016 SDDGAMDTKCVELAELAAIAVDSAKTGEIVKMPPSLSPKEYPDFMGKEDAISYKSKKILG 1075
Query: 967 KLYRATLDSIMQIRSNAIWSEKIA---EASYDHDLEVDGFEAFLGVAESHKEMYEEEMNA 1023
+LYR SI+ S + S+ E YD DLEV G +FL A K +YE ++N
Sbjct: 1076 RLYR----SILMENSGDLLSQVTCISNENQYDTDLEVPGALSFLEDAWKCKCLYEAQLNT 1131
Query: 1024 LMNYYGASTEDEILTGNLRNRASYLQRDNRRYG-DMKDRILLSAKNLQNEAKEWFGS--- 1079
L+N +G +E E++TG + + Y N++Y +K+R+ + L E + F S
Sbjct: 1132 LLNQFGVHSEAELVTGEIWSLVGY----NKKYQYQLKERLNYAYSKLHQEFRSIFESIDV 1187
Query: 1080 ---SCKENEHPQLASAWYHVTYSPSYCKER-------MALLSFPWIVGDILLNIK 1124
K + ASAWY VTY P + + R A LSF WI D L IK
Sbjct: 1188 SYGDSKNLAYEMKASAWYQVTYHPEFIRLRELDDEKTPARLSFAWIPVDYLAQIK 1242
>gi|296082033|emb|CBI21038.3| unnamed protein product [Vitis vinifera]
Length = 1035
Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust.
Identities = 347/941 (36%), Positives = 514/941 (54%), Gaps = 66/941 (7%)
Query: 229 WVRTTDFSVTKSIGCSTSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTTSEI 288
W+RTTDF+V+ +IG S+ I + + + + + + +LE+ ++
Sbjct: 90 WIRTTDFTVSGAIGRCNSYRISIP-PRYGAKLKKAMDYLRARRVN-VLEDSPKWQLRVRD 147
Query: 289 VP---LVKCRPGFNLSHE------VLFQLNSLVHNQKVSLVAADAELIQILSGLSMETAL 339
P L P F + H+ V+F +N+++H ++ + +L + +
Sbjct: 148 EPDFGLPMSDPFFCIQHKEGIDFRVMFLVNAVMHKGIINQHQLSDKFFDLLRSQQKDINI 207
Query: 340 MVLQKLHKLKSICYDPVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKI 399
L+ + + +D +K L +N K L S K L D ++ R ++TP K
Sbjct: 208 AALKHICSYRHPVFDAYQRLKLVHKWLLKNPKL--LKSPKELDD--IVEVRRLVITPSKA 263
Query: 400 YCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALS---TSIQRGIFSK--PY 454
YCL PE+E SN V++N+ + + F+RVTF++E + AN L+ I + I S P
Sbjct: 264 YCLPPEVELSNRVLRNYKEVSDRFLRVTFMDEGMQTINANVLNYYVAPIVKVITSNSFPQ 323
Query: 455 RTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFN 514
+T+++ R+ TIL DG + + Y FLAFS++QLR+ S W FA + + S ++ WMG F
Sbjct: 324 KTRVFKRVKTILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKKTSVRAIKSWMGKFT 383
Query: 515 KIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFAR 574
R+V+KCAARMGQ FSS+ T+ VP +V+ +PD++ N Y FSDGIGKI A
Sbjct: 384 N-RNVAKCAARMGQCFSSTYATVEVPSWEVKELPDIK----RNGYDFSDGIGKIVPDLAM 438
Query: 575 QVAQKCGLSHTPSAFQIRYGGYKGVIAV---DRNSFRKLSLRRSMLKFESRNRMLNVTKW 631
+VA+K L TPSA+QIRY G KGV+A D + R LS R SM KF S + +L + W
Sbjct: 439 EVAEKLKLEGTPSAYQIRYAGCKGVVACWPSDNDGIR-LSWRPSMNKFLSDHTILEICSW 497
Query: 632 SESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSK 691
+ P FLNR+I++LLS L V D++F MQ+ + L +ML + + A DVL + +
Sbjct: 498 TRFQPGFLNRQIVTLLSALNVPDKIFWKMQESMISKLNQMLTDTDVAFDVLIA-SCAEQG 556
Query: 692 NILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNY 751
N ML G++P EP+L ML Q L+ + RI+VP GR L+GC DE G+L
Sbjct: 557 NTAAIMLSAGFKPQTEPHLQGMLTCIRAAQFWGLREKARIFVPSGRWLMGCLDELGVLEQ 616
Query: 752 GQVFVRVTM-TREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMK 810
GQ F++V+ + E K S F ++KG V + KNPCLHPGDVR+LEAV
Sbjct: 617 GQCFIQVSSPSLENCFLKHGSRFS-AQKNLKVIKGIVAIAKNPCLHPGDVRILEAVDAPG 675
Query: 811 LEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETE--PPMDYTGRRS 868
LE VDC++FPQKG+RPH NE SG DLDGD++F++W+ LIP + PPM Y +
Sbjct: 676 LEH--LVDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWEETLIPPSKQSWPPMQYDSAEA 733
Query: 869 RIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVD 928
+ + +VT +I FF M+N+ LGAI AH+VHADR A CL LA + AVD
Sbjct: 734 KALAREVTSLDIIDFFTKNMVNENLGAICNAHVVHADRSEYGALDEACLDLAERAATAVD 793
Query: 929 FAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEK 988
F KTG +P LKPK +PDFM +E+ Y S +LGK+YR D+ + S + SE+
Sbjct: 794 FPKTGKLVTLPPYLKPKMYPDFMGKEEFQTYRSNKILGKMYRQIKDAYNEDVSES--SEQ 851
Query: 989 IAEAS---YDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRA 1045
I A +D DL + G F+ A HK Y+ ++N L+ Y E+E++TG++ +
Sbjct: 852 IFGADKVPFDEDLGIPGSADFINDAWIHKCSYDGQLNGLLGQYKVKREEEVVTGHVWSMP 911
Query: 1046 SYLQRDNRRYGDMKDRILLSAKNLQNEAKEWF----------GSSCKENEHPQLASAWYH 1095
Y +R+ G++ +R+ + +L+ E ++ F K + Q ASAWY
Sbjct: 912 KY---KSRKQGELTERLKHAYSSLKKEFRQIFEKMNSDFDQLTDDEKNRLYEQKASAWYQ 968
Query: 1096 VTYSPSYCKERMAL------------LSFPWIVGDILLNIK 1124
VTY P++ K+ + L LSF WI D L IK
Sbjct: 969 VTYHPTWVKKSLELQNPDEVFGERVMLSFAWITADYLARIK 1009
>gi|225430281|ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
Length = 1197
Score = 560 bits (1444), Expect = e-156, Method: Compositional matrix adjust.
Identities = 347/941 (36%), Positives = 514/941 (54%), Gaps = 66/941 (7%)
Query: 229 WVRTTDFSVTKSIGCSTSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTTSEI 288
W+RTTDF+V+ +IG S+ I + + + + + + +LE+ ++
Sbjct: 252 WIRTTDFTVSGAIGRCNSYRISIP-PRYGAKLKKAMDYLRARRVN-VLEDSPKWQLRVRD 309
Query: 289 VP---LVKCRPGFNLSHE------VLFQLNSLVHNQKVSLVAADAELIQILSGLSMETAL 339
P L P F + H+ V+F +N+++H ++ + +L + +
Sbjct: 310 EPDFGLPMSDPFFCIQHKEGIDFRVMFLVNAVMHKGIINQHQLSDKFFDLLRSQQKDINI 369
Query: 340 MVLQKLHKLKSICYDPVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKI 399
L+ + + +D +K L +N K L S K L D ++ R ++TP K
Sbjct: 370 AALKHICSYRHPVFDAYQRLKLVHKWLLKNPKL--LKSPKELDD--IVEVRRLVITPSKA 425
Query: 400 YCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALS---TSIQRGIFSK--PY 454
YCL PE+E SN V++N+ + + F+RVTF++E + AN L+ I + I S P
Sbjct: 426 YCLPPEVELSNRVLRNYKEVSDRFLRVTFMDEGMQTINANVLNYYVAPIVKVITSNSFPQ 485
Query: 455 RTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFN 514
+T+++ R+ TIL DG + + Y FLAFS++QLR+ S W FA + + S ++ WMG F
Sbjct: 486 KTRVFKRVKTILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKKTSVRAIKSWMGKFT 545
Query: 515 KIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFAR 574
R+V+KCAARMGQ FSS+ T+ VP +V+ +PD++ N Y FSDGIGKI A
Sbjct: 546 N-RNVAKCAARMGQCFSSTYATVEVPSWEVKELPDIK----RNGYDFSDGIGKIVPDLAM 600
Query: 575 QVAQKCGLSHTPSAFQIRYGGYKGVIAV---DRNSFRKLSLRRSMLKFESRNRMLNVTKW 631
+VA+K L TPSA+QIRY G KGV+A D + R LS R SM KF S + +L + W
Sbjct: 601 EVAEKLKLEGTPSAYQIRYAGCKGVVACWPSDNDGIR-LSWRPSMNKFLSDHTILEICSW 659
Query: 632 SESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSK 691
+ P FLNR+I++LLS L V D++F MQ+ + L +ML + + A DVL + +
Sbjct: 660 TRFQPGFLNRQIVTLLSALNVPDKIFWKMQESMISKLNQMLTDTDVAFDVLIA-SCAEQG 718
Query: 692 NILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNY 751
N ML G++P EP+L ML Q L+ + RI+VP GR L+GC DE G+L
Sbjct: 719 NTAAIMLSAGFKPQTEPHLQGMLTCIRAAQFWGLREKARIFVPSGRWLMGCLDELGVLEQ 778
Query: 752 GQVFVRVTM-TREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMK 810
GQ F++V+ + E K S F ++KG V + KNPCLHPGDVR+LEAV
Sbjct: 779 GQCFIQVSSPSLENCFLKHGSRFS-AQKNLKVIKGIVAIAKNPCLHPGDVRILEAVDAPG 837
Query: 811 LEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETE--PPMDYTGRRS 868
LE VDC++FPQKG+RPH NE SG DLDGD++F++W+ LIP + PPM Y +
Sbjct: 838 LEH--LVDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWEETLIPPSKQSWPPMQYDSAEA 895
Query: 869 RIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVD 928
+ + +VT +I FF M+N+ LGAI AH+VHADR A CL LA + AVD
Sbjct: 896 KALAREVTSLDIIDFFTKNMVNENLGAICNAHVVHADRSEYGALDEACLDLAERAATAVD 955
Query: 929 FAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEK 988
F KTG +P LKPK +PDFM +E+ Y S +LGK+YR D+ + S + SE+
Sbjct: 956 FPKTGKLVTLPPYLKPKMYPDFMGKEEFQTYRSNKILGKMYRQIKDAYNEDVSES--SEQ 1013
Query: 989 IAEAS---YDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRA 1045
I A +D DL + G F+ A HK Y+ ++N L+ Y E+E++TG++ +
Sbjct: 1014 IFGADKVPFDEDLGIPGSADFINDAWIHKCSYDGQLNGLLGQYKVKREEEVVTGHVWSMP 1073
Query: 1046 SYLQRDNRRYGDMKDRILLSAKNLQNEAKEWF----------GSSCKENEHPQLASAWYH 1095
Y +R+ G++ +R+ + +L+ E ++ F K + Q ASAWY
Sbjct: 1074 KY---KSRKQGELTERLKHAYSSLKKEFRQIFEKMNSDFDQLTDDEKNRLYEQKASAWYQ 1130
Query: 1096 VTYSPSYCKERMAL------------LSFPWIVGDILLNIK 1124
VTY P++ K+ + L LSF WI D L IK
Sbjct: 1131 VTYHPTWVKKSLELQNPDEVFGERVMLSFAWITADYLARIK 1171
>gi|106733035|gb|ABF82437.1| putative RNA-dependent RNA polymerase 6 [Physcomitrella patens subsp.
patens]
gi|106733051|gb|ABF82438.1| putative RNA-dependent RNA polymerase 6 [Physcomitrella patens subsp.
patens]
Length = 1152
Score = 554 bits (1428), Expect = e-155, Method: Compositional matrix adjust.
Identities = 396/1189 (33%), Positives = 599/1189 (50%), Gaps = 123/1189 (10%)
Query: 6 VWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWK--SRGIGRVQFTSLDFKSK 63
V VSN P +A A DL +L S LG I DR K +R V+F S +
Sbjct: 6 VIVSNFPSSAEAADLAAYLRSVLG---------IVDRVKVKQITRPYAFVKFLSATVAKQ 56
Query: 64 AQNLSLNDKLVFNSQNLKI----SETHSDIVPR-PVKAQHRVEDGVLHVGVMCKEERLRV 118
A + + +L+F LKI S+ S++ R V RV+ L +G + + +
Sbjct: 57 ACHDAECGRLIFQDCKLKIVPCTSQGSSEVCQRGEVIELRRVQ---LQLGTLIGPQDFLL 113
Query: 119 LQTFEGVRGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVG 178
G L ++R + +++ ++ +Q D+ C FK+E+ V E
Sbjct: 114 SWRVPGYECSLRISKKRGKTFLFFSYDKVMSPNLQ----DTEPCEFKLEL---SVKEVRK 166
Query: 179 FSLDEGATVNGILFKLKYGPKI--YQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFS 236
G ++ + P + Y+ G V P + D + W+RT DFS
Sbjct: 167 IQTQRGRMPEMMIVMQLFSPPLISYRTSQGDGVYCTTP-----VPLPDDEDPWIRTVDFS 221
Query: 237 VTKSIGCSTSFFWEIKNGLLASDISNIFPFYKEDKTDLILEE---GEEFCTTSEIVPLVK 293
+SIG ++ ++ + PF + D +E+ G + + +
Sbjct: 222 PHRSIGRCLTYIISVRP-------TEYTPFRR--MMDFFMEQRLCGSVLQNLNFLYEEID 272
Query: 294 CRPGFN---------LSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQK 344
C+ G N + E++F +N+LVH +++ + E + + +L LQ
Sbjct: 273 CKKGQNYFFVHHQKGVPFELMFLVNALVHRGIINMTSLTQEFYETVMS-DRAVSLFALQH 331
Query: 345 LHKLKSICYDPVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGP 404
+ ++ V V+ +N K ++ + + YR L TP + C P
Sbjct: 332 MLTYTHPVFNAVLRVQQVQEWTRKNDK---FRQGEKALAFGSILMYRVLFTPTRGICTLP 388
Query: 405 ELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGI--FSKPY---RTKIY 459
+ SN V++++ + F+RV+FV+ED ++ +L+ + R + S Y RT+I+
Sbjct: 389 VVSRSNRVLRHYHTLSDRFLRVSFVDEDLHQISPGSLTVPVSRSVRCLSSTYEYNRTEIH 448
Query: 460 SRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSV 519
RIL I+++G + + Y FLAFS+SQ+R S W FAS V+ +R WMG F ++V
Sbjct: 449 RRILDIVENGFKLCGRQYSFLAFSSSQMRGGSAWFFASTGNVNTHLIRQWMGKFPS-QNV 507
Query: 520 SKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQK 579
+K AARMGQ FS S TL V V +PDV N Y FSDG G I+ FA +V+
Sbjct: 508 AKYAARMGQCFSCSFPTLPVLKAMVRKLPDVV----RNGYIFSDGCGMIAPDFALRVSLS 563
Query: 580 CGLSHTPSAFQIRYGGYKGVIAV----DRNSFRKLSLRRSMLKFESRNRMLNVTKWSESM 635
L +TPS +QIRY GYKGV++ R+S L LR SM KFES + L V WS+ +
Sbjct: 564 LKLDYTPSVYQIRYAGYKGVVSTWPIPGRHS--HLGLRDSMKKFESGHTELEVVNWSKYL 621
Query: 636 PCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILV 695
PC+LNR+II LLSTL V++ VF+++Q Q+ L ML + A +++ + DS +
Sbjct: 622 PCYLNRQIICLLSTLKVENAVFKSLQDAQVARLKAMLGDPNQAYEIVTT-SCSDSHSTAA 680
Query: 696 KMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVF 755
ML G+ P EP+L +L+S + L DL S+ RI+VP GR +IGC DETG+LNYGQ F
Sbjct: 681 TMLRGGFLPLKEPHLYELLVSIKFSLLEDLVSKARIFVPNGRWVIGCMDETGLLNYGQCF 740
Query: 756 VRVT--MTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEE 813
+ V+ +++ L + H ++ GKV++ KNPCLHPGD+R+LEAV +L
Sbjct: 741 IHVSGPVSKACLGGDGNNLGH--SGLLQVITGKVIMVKNPCLHPGDIRILEAVDLPELHS 798
Query: 814 KDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEP--PMDYTGRRSRIM 871
VDC++ PQ G RPHPNE SG DLDGD++F WD +LIP E PM+Y S+I+
Sbjct: 799 --MVDCLVLPQNGPRPHPNEVSGSDLDGDVYFTCWDPNLIPPSGESWEPMEYAAHDSKIL 856
Query: 872 DHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAK 931
++++ FFV+ M+ND LG IS AH+ AD+ P+ A S CL LA L S+AVDF K
Sbjct: 857 YRPANIKDVKNFFVNSMMNDKLGFISNAHVARADKSPEGALDSDCLRLAHLASIAVDFPK 916
Query: 932 TGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSI------MQIRSNAIW 985
TG A MP L+ E+PDFME+E Y S V+G+LYR+ + Q NA+
Sbjct: 917 TGKNATMPHDLRVNEWPDFMEKEGAVTYQSNKVIGELYRSVTKFLKAEVEQHQHADNAVD 976
Query: 986 SEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRA 1045
+ I YD+DL+V G+E +L A + K Y+ ++ +M ++ E ++ L+ +
Sbjct: 977 LDSI----YDYDLQVPGYEVYLDDAWTKKISYDRQLRCMMTHFNVQREAALIASWLKRGS 1032
Query: 1046 SYLQRDNRRYGDMKDR---ILLSAKNLQNE-----------AKEWFGSSCKENEHP---- 1087
L+ NR GD + +L Q E +++ SS E + P
Sbjct: 1033 PGLRSVNRNRGDAFAQSYGVLYEEFRAQFEGLKKGLDPDGYSEDMVESSSSEIKGPTDFA 1092
Query: 1088 QLASAWYHVTYSPSYCKERM------------ALLSFPWIVGDILLNIK 1124
ASAWYHVTY P + ++ + LLSFPWI +L NIK
Sbjct: 1093 AKASAWYHVTYHPEWKQKALEIFENSGESSPRPLLSFPWITASVLSNIK 1141
>gi|357119219|ref|XP_003561343.1| PREDICTED: probable RNA-dependent RNA polymerase SHL2-like
[Brachypodium distachyon]
Length = 1208
Score = 554 bits (1428), Expect = e-154, Method: Compositional matrix adjust.
Identities = 365/989 (36%), Positives = 531/989 (53%), Gaps = 87/989 (8%)
Query: 190 ILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKSIG-CSTSFF 248
+L +L P++Y + + + P D W+RTTD +++ +IG C
Sbjct: 227 LLLRLTAAPRVYYRTADDDIHVSVPFDLLDDDDP-----WIRTTDITMSGAIGRCG---M 278
Query: 249 WEIKNGLLASDISNIFPFYKEDKTDLILEEG------------EEFCTTSEIVPLVKC-R 295
+ IK + + Y + + LI+E +E + L C +
Sbjct: 279 YRIKVAPRKWIMMDRALAYMKGQRVLIVESTVWSGPRRGLKVRDEPEFEEPMQDLFFCVQ 338
Query: 296 PGFNLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDP 355
L VLF +N+LVH ++ E + +LSG + + L++ K P
Sbjct: 339 HAEGLKFPVLFLVNALVHKGIINQHQLTPEFLSLLSGRDDDVNVAALKEFWGDKF----P 394
Query: 356 VSFVKTQLHVLGRNCKSIP-LSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVK 414
V + +L R S P L ++ D NV R ++TP CL P++E SN V++
Sbjct: 395 VFNARKRLEHAHRRVASNPKLLRSGKVGDDNV-EVRRLVITPTSASCLPPQIELSNRVLR 453
Query: 415 NFAKYASDFMRVTFVEEDWSKLPANAL---STSIQRGIFSKPY--RTKIYSRILTILQDG 469
++ + A F+RVTF++E L N L + I + + + +T +Y R+ L +G
Sbjct: 454 HYHEVADRFLRVTFMDEGMQSLNNNVLNFYTAPIVKALRPNSFQQKTAVYKRVKMFLTEG 513
Query: 470 IVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQL 529
+ + Y FLAFS++QLR+ S W FA + + + E +R WMG F ++V+K AARMGQ
Sbjct: 514 FHMCGRKYSFLAFSSNQLRDRSAWFFAEDSKTTVESIRKWMGRFTS-KNVAKHAARMGQC 572
Query: 530 FSSSKQTLVVPVQDV-EMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTP-S 587
FSS+ T++V +V E + DVE N Y FSDGIGKI+ A +VA+K L +P S
Sbjct: 573 FSSTYATVMVKPDEVNESLEDVE----RNNYTFSDGIGKITPDLAMEVAEKLQLMDSPPS 628
Query: 588 AFQIRYGGYKGVIAV--DRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIIS 645
A+QIRY GYKGVIAV N+ +LSLR SM KFES++ +L V W+ P FLNR+II
Sbjct: 629 AYQIRYAGYKGVIAVWQGNNNGIRLSLRPSMKKFESKHSVLEVVSWTRFQPGFLNRQIIL 688
Query: 646 LLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPN 705
LLS+L V D++F MQ+ L L K+L++ + A +V+ + + N ML G+ P
Sbjct: 689 LLSSLNVSDDIFSQMQESMLFNLNKILLDSDVAFEVVTT-SCAEQGNTAALMLSAGFGPG 747
Query: 706 VEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREEL 765
EP+L MLL+ QL DL + RI+VPKGR L+GC DE G+L GQ FV+ +
Sbjct: 748 TEPHLRGMLLAIRSAQLQDLLEKTRIFVPKGRWLMGCLDELGVLEQGQCFVQASAA---- 803
Query: 766 ESKDQSFFHR-----VDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCI 820
S D+ F + T I+ G V++ KNPCLHPGDVR+LEAV +L VDC+
Sbjct: 804 -SLDRCFLKHGSRFSANKNTDIIVGTVVIAKNPCLHPGDVRILEAVDVPELHH--LVDCL 860
Query: 821 IFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEP--PMDYTGRRSRIMDHDVTLE 878
+FPQKGERPHPNE SG DLDGD++F++WD L+P + PMDY+ ++ V+
Sbjct: 861 VFPQKGERPHPNEASGSDLDGDLYFVTWDEKLVPPGKKSWNPMDYSPAEAKQQQRQVSQH 920
Query: 879 EIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEM 938
+I FF+ M+N+ LG I AH+VHAD A KC+ LA L + AVDF KTG M
Sbjct: 921 DIVDFFLKNMVNENLGPICNAHVVHADLSEYGAMDEKCIRLAELAATAVDFPKTGKLVTM 980
Query: 939 PLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEK---IAEASYD 995
P L+PK +PDFM +E+ Y S +LG+LYR SI + + SE+ + + YD
Sbjct: 981 PPELRPKIYPDFMLKEESRSYKSEKILGRLYR----SIQEASGGDLVSEEACTLNDLLYD 1036
Query: 996 HDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRY 1055
DLEV G FL A K YE ++N L+N TE E++TG++ + Y ++R+
Sbjct: 1037 TDLEVPGASRFLTSAWECKCNYEGQLNVLLNQSRVCTEAELVTGHVWSLPKY---NSRKQ 1093
Query: 1056 GDMKDRILLSAKNLQNEAKEWFGS---SCKENE------HPQLASAWYHVTYSPSYC--- 1103
G++++RI + LQ E + F S C+ + + + ASAWY VTY P +
Sbjct: 1094 GEIRERIKNAYAALQKEYRSVFESLTDQCQITDDEKNLLYERKASAWYQVTYHPKWVEKL 1153
Query: 1104 --------KERMALLSFPWIVGDILLNIK 1124
+ER A LSF WI D L+ IK
Sbjct: 1154 RAMLDEDGEERPARLSFAWIAVDYLVRIK 1182
>gi|295885030|gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutum]
gi|295885034|gb|ADG57592.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutum]
Length = 1196
Score = 553 bits (1424), Expect = e-154, Method: Compositional matrix adjust.
Identities = 394/1205 (32%), Positives = 612/1205 (50%), Gaps = 127/1205 (10%)
Query: 2 VLATVWVSNIPQTAIAKDLLLFLESKLG-------KNSVFALE-----------IITDRS 43
V+ V V + A+DL+ +LE+++G K S E +I +
Sbjct: 11 VVTQVSVGGFDRHVKARDLMKYLENEVGLVWRCRLKTSWTPPESYPNFEITDTTVIQRKD 70
Query: 44 NWKS-RGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKIS----------ETHSDIVPR 92
N+K V F S + A + + +L FN+Q LK+S D P
Sbjct: 71 NYKKVEPHAFVHFASPQAVTWAVDAAGRTELAFNNQLLKVSLGPENPYYLNRRRRDTTP- 129
Query: 93 PVKAQHRVEDGVLHVGVMCKEERLRVLQTFEGVRGWLLPDRRRLEFWVWP---------- 142
++ D L +G + + E + GW P +EF V P
Sbjct: 130 -----FKLPDVSLEIGTLASCD--------EFIVGWRGPPSG-VEFLVDPFDCTCKFCFS 175
Query: 143 KHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFSLDEGATVNGILFKLKYGPKIYQ 202
+ KG E C FKVE L ++ E +S G V L +L P ++
Sbjct: 176 RDTAFSFKGTNE--HAVIKCDFKVEFLVREINEVKQYSEPTGFVV---LLQLASSPWVWY 230
Query: 203 KVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKSIG-CST-SFFWEIKNGLLASDI 260
+ + P D D W+RTTDF+ + +IG C+T ++GL +
Sbjct: 231 RTADDDFEKTVPFGLL-----DDDDQWIRTTDFTASGAIGRCNTYRVLVRPRHGL---KL 282
Query: 261 SNIFPFYKEDK-------TDLILEEGEEFCTTSEIVPLVKCRPGFNLSHEVLFQLNSLVH 313
+ +E + + L + + +F + + G + E++F +N+++H
Sbjct: 283 KKAMDYLRERRVPVEDLRSQLRIRDEPDFGRSMSDHFYYIYKEG--IPFEIMFLVNAVLH 340
Query: 314 NQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSFVKTQLHVLGRNCKSI 373
+ + ++L SME + L+ ++ + YD +K L +N K
Sbjct: 341 KGIFNQHQLSMDFFRLLRNQSMEVNVAALKHIYSYRHPVYDAYERLKDVHDWLLKNPKL- 399
Query: 374 PLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDW 433
S +L D ++ R ++TP K YCL PE+E SN V++ + A F+RVTF++E
Sbjct: 400 -FKSPPQLDD--IVEIRRLVITPTKAYCLLPEVELSNRVLRKYKDVADRFLRVTFMDEGM 456
Query: 434 SKLPANALS---TSIQRGIFSKPY--RTKIYSRILTILQDGIVIGDKHYEFLAFSASQLR 488
+ AN L+ +I R + S + +T ++ R+ +IL DG + + Y FLAFSA+QLR
Sbjct: 457 QIMNANVLTYYNAAIVRDVTSTSFSQKTGVFKRVKSILTDGFYLCGRKYSFLAFSANQLR 516
Query: 489 NNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEM-I 547
+ + W FA + +++ + GWMG F R+++KCAARMGQ FSS+ T+ VP V M +
Sbjct: 517 DRAAWFFAEDGKINVLQIIGWMGKFTN-RNIAKCAARMGQCFSSTYATVEVPSGQVNMHL 575
Query: 548 PDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLS-HTPSAFQIRYGGYKGVIAV--DR 604
PD++ N Y FSDGIGKI+ A +VAQK L + P A+QIRY G KGV+A +
Sbjct: 576 PDIK----RNGYDFSDGIGKITPDLAMEVAQKLKLDLNPPCAYQIRYAGCKGVVACWPEE 631
Query: 605 NSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQ 664
+LSLR SM+KF S + L + W+ P FLNR+II+LLSTLGV DEVF MQ
Sbjct: 632 GDRIRLSLRSSMIKFFSHHTTLEICSWTRFQPGFLNRQIITLLSTLGVPDEVFWGMQNSM 691
Query: 665 LILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSD 724
+ L K+L++ +AA +V+ G + ML G++P EP+L ML +QL
Sbjct: 692 VSKLDKVLVDTDAAFEVVISSCGEQGHTPAI-MLSAGFKPQTEPHLRGMLTCVRASQLWG 750
Query: 725 LKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTM-TREELESKDQSFFHRVDDKTSIV 783
L+ + RI++ GR L+G DE G+L GQ F++V+ + + K S F ++
Sbjct: 751 LREKSRIFIHSGRWLMGVLDELGVLEQGQCFIQVSNPSLQNCFLKHGSRFAETKKNFEVI 810
Query: 784 KGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDI 843
KG V++ KNPCLHPGD+R+LEAV L DC++FPQKGERPH NE SG DLDGD+
Sbjct: 811 KGLVVIAKNPCLHPGDIRILEAVDAPGLHH--LYDCLVFPQKGERPHTNEASGSDLDGDL 868
Query: 844 FFISWDNDLIPC--ETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHL 901
+F++W+ LIP ++ PM Y R ++ VT ++I +FF M+N+ LG+I AH+
Sbjct: 869 YFVTWEEALIPPSKKSSQPMQYDLDAPRELNRSVTHKDIIEFFSKNMVNEHLGSICNAHV 928
Query: 902 VHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYIS 961
VH+D A KC+HLA L ++AVDF KTG MP LKPK +PDFM +E+ Y S
Sbjct: 929 VHSDLSEHGASDEKCIHLAELAAIAVDFPKTGKIVSMPAQLKPKLYPDFMGKEEFQSYKS 988
Query: 962 FGVLGKLYRATLDSI-MQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEE 1020
+LG+LYR D+ + ++ + ++ +YD DLE+ G ++ A + K Y+ +
Sbjct: 989 NKILGRLYRYIKDAYDKDVSESSELNFGASDINYDADLEITGSADYITDAWAKKCSYDGQ 1048
Query: 1021 MNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGS- 1079
+ L+ Y E+E++TG + + Y +++ GD+K+++ S +L+ E ++ F +
Sbjct: 1049 LIGLLKQYKVKREEEVVTGQIWSMPKYA---SKKLGDLKEKLGHSYGSLRKEFRQLFENM 1105
Query: 1080 -----SCKENEHPQL----ASAWYHVTYSPSYCKERM-----------ALLSFPWIVGDI 1119
E+E +L ASAWY VTY P + ++++ +LSF WI D
Sbjct: 1106 DSEFEQLNEDEKNKLYERKASAWYQVTYHPEWVQKKLEFQKPDGDEGVVMLSFAWIAADY 1165
Query: 1120 LLNIK 1124
L IK
Sbjct: 1166 LARIK 1170
>gi|242057591|ref|XP_002457941.1| hypothetical protein SORBIDRAFT_03g022880 [Sorghum bicolor]
gi|241929916|gb|EES03061.1| hypothetical protein SORBIDRAFT_03g022880 [Sorghum bicolor]
Length = 1207
Score = 550 bits (1417), Expect = e-153, Method: Compositional matrix adjust.
Identities = 367/1021 (35%), Positives = 530/1021 (51%), Gaps = 99/1021 (9%)
Query: 162 CCFKVEILFEDVLETVGFSLDEGATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHIC 221
C K+E DV E F LD +L +L P +Y + + + P D
Sbjct: 202 CDVKLEFPVRDVAEVRVFRLD-----CSLLIRLSAAPLVYYRTADDDIHESVPFDLLDDD 256
Query: 222 KEDFDFFWVRTTDFSVTKSIGCSTSF-------FWEIKNGLLASDISNIFPFYKEDKTDL 274
W+RTTD + + +IG ++ FW LA Y D+
Sbjct: 257 DP-----WIRTTDITPSGAIGRCGAYRITFSPRFWPKMERALA---------YMRDRRVP 302
Query: 275 ILEEGEEFCTTSEIVPLVKCRPGFN---------------LSHEVLFQLNSLVHNQKVSL 319
I++ G + + V+ P F L VLF +N+LVH ++
Sbjct: 303 IVDCGGGWGARRGLT--VRDEPEFGERMQDLFFCVQHSEGLKFPVLFLVNALVHKGVINQ 360
Query: 320 VAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSFVKTQLHVLGRNCKSIPLSSHK 379
E +L + + L++ K +D +K + R K +
Sbjct: 361 HHLTPEFFGLLQRKEDDVNVAALREFWGDKFPVFDACGRLKNLQDRVARYPKLL----RN 416
Query: 380 RLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPAN 439
++ D N R +VTP K YCL PE+E SN V++++ + F+RVTF++E L +N
Sbjct: 417 KIGDDN-SEVRRLVVTPTKAYCLPPEVERSNRVIRHYREVTDRFLRVTFMDEGMQLLNSN 475
Query: 440 ALSTS---IQRGIFSKPY--RTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWM 494
L+ S I + + S + +T +Y RI T L +G + + Y FLAFS++QLR+ S W
Sbjct: 476 VLNFSAAQIVKDLMSNSFLHKTTVYKRIKTFLTEGFHMCGRKYSFLAFSSNQLRDRSAWF 535
Query: 495 FASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDV-EMIPDVEVT 553
FA + + E +R WMG F ++V+K AARMGQ FSS+ T+V+ +V E + +VE
Sbjct: 536 FAEDRMRTVETIRKWMGRFTS-KNVAKHAARMGQCFSSTYATVVMQPHEVNECLEEVE-- 592
Query: 554 SDGNTYCFSDGIGKISLSFARQVAQKCGLS-HTPSAFQIRYGGYKGVIAV--DRNSFRKL 610
N Y FSDGIGKI+ A +VAQK L+ + PSA+QIRY G+KGVIAV N +L
Sbjct: 593 --RNGYIFSDGIGKITCDLALEVAQKLRLTDNPPSAYQIRYAGFKGVIAVWEGENDGIRL 650
Query: 611 SLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGK 670
SLR SM KFES + +L V W++ P FLNR+II+LLS+L V D +F MQ+ L L
Sbjct: 651 SLRPSMHKFESNHNVLEVVSWTKFQPGFLNRQIITLLSSLNVPDAIFSQMQEAMLSNLNN 710
Query: 671 MLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCR 730
+L + + A D++ + + N ML G P EP+L MLL+ +QL L + R
Sbjct: 711 ILSDTDVAFDIVTT-SCAEQGNTAALMLSAGISPGTEPHLKAMLLAIRSSQLLGLLEKTR 769
Query: 731 IYVPKGRLLIGCFDETGILNYGQVFVRVTM-TREELESKDQSFFHRVDDKTSIVKGKVLV 789
I+VPKGR L+GC DE GIL GQ F+R + + K F + + G +++
Sbjct: 770 IFVPKGRWLMGCLDELGILEQGQCFIRASSPSLNNCLVKHGPRFSSANKNAETIVGTIVM 829
Query: 790 TKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWD 849
KNPCLHPGDVR+LEAV +L VDC++FP+KGERPH NE SG DLDGD++F++WD
Sbjct: 830 AKNPCLHPGDVRILEAVDVPELHH--LVDCLVFPKKGERPHANEASGSDLDGDLYFVTWD 887
Query: 850 NDLIPCETEP--PMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRD 907
+LIP + PMDY+ ++ + V+ +I FF+ M+N+ LG IS AH+VHAD
Sbjct: 888 ENLIPPGKKSWNPMDYSPTEAKQLPRAVSPHDIVDFFLKNMVNEKLGPISNAHVVHADMS 947
Query: 908 PDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGK 967
A KC+ LA L + AVDF KTG MP +L+PK +PDFM +ED Y S +LG+
Sbjct: 948 EYGAMDEKCIQLAELAATAVDFPKTGKIVSMPPSLRPKLYPDFMGKEDAISYKSEKILGR 1007
Query: 968 LYRATLDSIMQIRSNAIWSEK---IAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNAL 1024
LYR SI + S + E+ + + YD D+EV G FL A K YE ++NAL
Sbjct: 1008 LYR----SIQEASSGDLVPEETCTLNDLPYDADMEVPGATDFLSSAWECKCSYETQLNAL 1063
Query: 1025 MNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSCKEN 1084
+N YG TE E++T ++ + Y +R+ GD+K+R+ + L + + F S +
Sbjct: 1064 LNQYGVRTEAELVTEHIWSLPKY---SSRKQGDIKERLKNAYSALHKDFRSIFESFVTDQ 1120
Query: 1085 E----------HPQLASAWYHVTYSPSYCKERM-----------ALLSFPWIVGDILLNI 1123
+ ASAWY VTY P + ++ A LSF WI + L I
Sbjct: 1121 TEISDDEKIRFYEMKASAWYQVTYHPKWVQKSREMLKPDFEDMPARLSFAWIGVEHLARI 1180
Query: 1124 K 1124
K
Sbjct: 1181 K 1181
>gi|224089239|ref|XP_002308662.1| rna-dependent RNA polymerase [Populus trichocarpa]
gi|222854638|gb|EEE92185.1| rna-dependent RNA polymerase [Populus trichocarpa]
Length = 1198
Score = 550 bits (1417), Expect = e-153, Method: Compositional matrix adjust.
Identities = 359/1019 (35%), Positives = 536/1019 (52%), Gaps = 85/1019 (8%)
Query: 162 CCFKVEILFEDVLETVGFSLDEGATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHIC 221
C FKVE L D+ E ++ + +L +L P+++ + + + P D
Sbjct: 193 CDFKVEFLVRDINEIKQYT---ETSCLVLLLQLASAPRVWYRTADDDIEVSVPFDLLDDD 249
Query: 222 KEDFDFFWVRTTDFSVTKSIGCSTSFFWEI--KNGLLASDISNIFPFYKEDKTD------ 273
W+RTTDF+ + +IG S+ I ++G + F KE +
Sbjct: 250 DP-----WIRTTDFTASGAIGRCHSYRVSIPPRHG---PKLRKAVDFLKERRVQEEYLRR 301
Query: 274 -LILEEGEEFCTTSEIVPLVKCRPGFNLSH------EVLFQLNSLVHNQKVSLVAADAEL 326
+ + + +F +P+ P F + H +VLF +N+++H + +
Sbjct: 302 PIRIRDEPDFG-----MPMTD--PFFCIHHKEGIAFDVLFLVNAVMHKGIFNQHQLSNDF 354
Query: 327 IQILSGLSMETALMVLQKLHKLKSICYDPVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNV 386
+L E + L+ ++ + +D +K L +N K + K+L D +
Sbjct: 355 FDLLRNQPTEVNVAALKHIYPYRRPVFDAYKKLKVAQEWLLKNPKF--FKNQKKLDD--I 410
Query: 387 MSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANAL---ST 443
R ++TP K YCL PE+E SN V++ + A F+RVTF++E + +NAL +
Sbjct: 411 AEIRRLVITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQTMNSNALNYFAA 470
Query: 444 SIQRGI--FSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEV 501
I R I +S P +T+I+ R+ +IL +G + + Y FLAFS++QLR+ S W FA + +
Sbjct: 471 PIVRAITSYSFPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSSNQLRDRSAWFFAEDRNI 530
Query: 502 SAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEM-IPDVEVTSDGNTYC 560
+ ++ WMG F ++++KCAARMGQ FSS+ T+ VP ++V +PD++ N Y
Sbjct: 531 NVMAIKSWMGKFTN-KNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIK----RNGYD 585
Query: 561 FSDGIGKISLSFARQVAQKCGLSH-TPSAFQIRYGGYKGVIAV--DRNSFRKLSLRRSML 617
FSDGIG I+ AR+VA+K P A+QIRY G KGV+A ++ +LSLR SM
Sbjct: 586 FSDGIGMITPDLAREVAEKLKFDFDPPCAYQIRYAGCKGVVACWPEQGDGIRLSLRSSMN 645
Query: 618 KFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREA 677
KF+S + +L + W+ P FLNR+II+LLS L V D VF MQ+ + L +ML++ +
Sbjct: 646 KFQSNHTILEICSWTRFQPGFLNRQIITLLSALNVPDAVFWKMQELMVSKLNQMLVDSDV 705
Query: 678 ALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGR 737
A DVL + + N+ ML G++P EP+L ML QL L+ + RI+VP GR
Sbjct: 706 AFDVLTA-SCAEQGNVAAIMLSAGFKPQKEPHLRGMLTCVRAAQLWGLREKARIFVPSGR 764
Query: 738 LLIGCFDETGILNYGQVFVRVTMTR-EELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLH 796
L+GC DE G+L GQ F++V+ + E K S F +VKG V++ KNPCLH
Sbjct: 765 WLMGCLDELGVLEQGQCFIQVSNSYLENCFVKHGSKFSETKKNLQVVKGTVVIAKNPCLH 824
Query: 797 PGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCE 856
PGD+R+LEAV L DC++FPQKGERPH NE SG DLDGD++F++WD +LIP
Sbjct: 825 PGDIRILEAVDAPGLHH--LYDCLVFPQKGERPHANEASGSDLDGDLYFVTWDENLIPPS 882
Query: 857 TEP--PMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSS 914
PM Y ++ + V ++I +FF M N+ LGAI AH+V AD A
Sbjct: 883 KRSWIPMQYDAAEAKQLTRPVNHQDIVEFFAKNMANENLGAICNAHVVRADLSEYGALDE 942
Query: 915 KCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLD 974
KCL LA L + AVDF KTG MP LKPK +PDFM +E+ Y S +LG+LYR +
Sbjct: 943 KCLTLAELAATAVDFPKTGKIVSMPSDLKPKIYPDFMGKEEHQSYKSKKILGRLYR-QIK 1001
Query: 975 SIMQIRSNAIWSE---KIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGAS 1031
A SE + YD DLEV G F+ A K Y+ ++N L+ Y
Sbjct: 1002 DAYDDDDVAASSELNFVRGDIPYDLDLEVLGATDFISDAWDRKCSYDGQLNGLLAQYKVK 1061
Query: 1032 TEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFG------SSCKENE 1085
E+E++TG++ S + +R+ GD+K+R+ S L+ E ++ F ++E
Sbjct: 1062 REEEVVTGHV---WSMPKGSSRKQGDLKERLKHSYNCLKREFRQVFEKMDLDFGQLDDDE 1118
Query: 1086 HPQL----ASAWYHVTYSPSYCKERMAL-----------LSFPWIVGDILLNIKSVNSR 1129
L ASAWY VTY P + ++ + L LSF WI D L IK +SR
Sbjct: 1119 KNMLYERKASAWYQVTYHPHWIQKSLELQDSDGAGISVMLSFAWIAADYLARIKIRHSR 1177
>gi|75330108|sp|Q8LHH9.1|SHL2_ORYSJ RecName: Full=Probable RNA-dependent RNA polymerase SHL2; AltName:
Full=Protein SHOOTLESS 2
gi|21328146|dbj|BAC00725.1| putative RNA-dependent RNA polymerase [Oryza sativa Japonica Group]
gi|157279691|dbj|BAF80151.1| SHOOTLESS2 [Oryza sativa Japonica Group]
Length = 1218
Score = 549 bits (1414), Expect = e-153, Method: Compositional matrix adjust.
Identities = 339/861 (39%), Positives = 481/861 (55%), Gaps = 54/861 (6%)
Query: 299 NLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSF 358
L +LF +N+LVH ++ E +L + L+ K +D
Sbjct: 351 GLKFPLLFMVNALVHKGIINQHQLTPEFFSLLGRSEENVNVAALRDFWGDKFPVFDACGR 410
Query: 359 VKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAK 418
+K L+ + RN K L K DH R ++TP + YCL PE+E SN V++++ +
Sbjct: 411 LKKALNRVARNPK---LLCSKVGDDH--AEVRRLVITPTRAYCLPPEVERSNRVLRHYHE 465
Query: 419 YASDFMRVTFVEEDWSKLPANALST---SIQRGIFSKPY--RTKIYSRILTILQDGIVIG 473
A F+RVTF++E L N L++ I + + S + +T +Y R+ +L +G +
Sbjct: 466 VADRFLRVTFMDEGMQVLNNNVLNSFTAPIVKDLMSNFFQQKTTVYKRVRMLLTEGFHMC 525
Query: 474 DKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSS 533
+ Y FLAFS++QLR+ S W FA + + + E +R WMG F ++V+K AARMGQ FSS+
Sbjct: 526 GRKYSFLAFSSNQLRDKSAWFFAEDRKTTVEAIRKWMGRFTS-KNVAKHAARMGQCFSST 584
Query: 534 KQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLS-HTPSAFQIR 592
T+ + +V+ D V N Y FSDGIGKI+ A +VA++ L+ + PSA+QIR
Sbjct: 585 YATVTMRPDEVDESFDDVVH---NEYIFSDGIGKITPDLALEVAERLQLTDNPPSAYQIR 641
Query: 593 YGGYKGVIAV--DRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTL 650
+ G+KGVIAV +L LR SM KFES + +L V W++ P FLNR+II LLS+L
Sbjct: 642 FAGFKGVIAVWQGHGDGTRLFLRPSMRKFESNHLVLEVVSWTKFQPGFLNRQIIILLSSL 701
Query: 651 GVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYL 710
V D +F MQ+ L L +L +R+ A +VL + D N ML G+EP EP+L
Sbjct: 702 NVPDSIFWQMQETMLSNLNNILSDRDVAFEVLTT-SCADDGNTAALMLSAGFEPRTEPHL 760
Query: 711 SMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTM-TREELESKD 769
MLL+ QL DL + RI+VPKGR L+GC DE G+L GQ F+R T+ + K
Sbjct: 761 KAMLLAIRSAQLQDLLEKARIFVPKGRWLMGCLDELGVLEQGQCFIRATVPSLNSYFVKH 820
Query: 770 QSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERP 829
S F D T ++ G V++ KNPCLHPGDVR+LEAV +L VDC++FPQKGERP
Sbjct: 821 GSRFSSTDKNTEVILGTVVIAKNPCLHPGDVRILEAVDVPELHH--LVDCLVFPQKGERP 878
Query: 830 HPNECSGGDLDGDIFFISWDNDLIPCETEP--PMDYTGRRSRIMDHDVTLEEIHKFFVDY 887
H NE SG DLDGD++F++WD LIP + PMDY+ ++ + V+ +I FF+
Sbjct: 879 HANEASGSDLDGDLYFVTWDEKLIPPGKKSWNPMDYSPPEAKQLPRQVSQHDIIDFFLKN 938
Query: 888 MINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEF 947
MI++ LG I AH+VHAD A KC+HLA L + AVDF KTG A MP LKPK +
Sbjct: 939 MISENLGRICNAHVVHADLSEYGAMDEKCIHLAELAATAVDFPKTGKLAIMPPHLKPKVY 998
Query: 948 PDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIA---EASYDHDLEVDGFE 1004
PDFM +ED Y S +LG+LYR SI + + + S+++ + YD DLEV G
Sbjct: 999 PDFMGKEDGQSYKSEKILGRLYR----SIQEASNGDVVSQEVCTPNDLPYDIDLEVPGAS 1054
Query: 1005 AFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILL 1064
FL A K Y+ +++AL++ Y TE E++TG++ ++ +++ GD+KDR+
Sbjct: 1055 DFLASAWQCKCSYDAQLSALLSQYRVRTEAELVTGHI---TFLVKNSSKKQGDIKDRLKT 1111
Query: 1065 SAKNLQNEAKEWF----------GSSCKENEHPQLASAWYHVTYSPSYC----------- 1103
+ L+ E K F G K + ASAWY VTY P +
Sbjct: 1112 AYSALRKEFKSTFESIASDQCEIGDDEKNLLYEMKASAWYQVTYHPKWVEKSRGILGPDG 1171
Query: 1104 KERMALLSFPWIVGDILLNIK 1124
+E A LSF WI D L IK
Sbjct: 1172 EEIPASLSFAWIPVDYLARIK 1192
>gi|255548928|ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
gi|223545464|gb|EEF46969.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
Length = 1203
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 357/1013 (35%), Positives = 527/1013 (52%), Gaps = 78/1013 (7%)
Query: 162 CCFKVEILFEDVLETVGFSLDEGATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHIC 221
C FK+E L D+ E ++ D V IL +L P ++ + + + P D
Sbjct: 193 CDFKLEFLVRDINEIKQYT-DTSCLV--ILLQLASAPSVWYRTADDDIEVLVPFDLLDDD 249
Query: 222 KEDFDFFWVRTTDFSVTKSIGCSTSFFWEI--KNGLLASDISNIFPFYKEDKTDLILEEG 279
W+RTTDF+ + +IG S+ I ++G + + F +E +
Sbjct: 250 DP-----WIRTTDFTPSGAIGRCNSYRVSIPPRHG---AKLKRALNFLRERRVQEDCLRR 301
Query: 280 EEFCTTSEIVPLVKCRPGFNLSHE------VLFQLNSLVHNQKVSLVAADAELIQILSGL 333
T + P F + HE ++F +N+++H + +L
Sbjct: 302 PLHVTAEPEYEMPMSDPFFCIHHEEGVDFNLMFLVNAVMHKGIFNQHQLSDSFFDLLRNQ 361
Query: 334 SMETALMVLQKLHKLKSICYDPVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRAL 393
++ + L+ + K +D +K L +N K S K+L D ++ R
Sbjct: 362 PLDVNIAALRHICSYKHPVFDAHKRLKAVQQWLLKNPKL--FRSSKQLDD--IVEIRRLA 417
Query: 394 VTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALS---TSIQRGIF 450
+TP + YCL PE+E SN V++ + A F+RVTF++E + AN L+ I R I
Sbjct: 418 ITPTRAYCLPPEVELSNRVLRRYKDIADQFLRVTFMDEGLQTMNANTLTYYCAPIVRDIT 477
Query: 451 SKPY--RTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRG 508
S + +T+I+ R+ +IL DG + + Y FLAFS++QLR+ S W FA + + S +R
Sbjct: 478 SNSFSQKTRIFKRVKSILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDGKTSVSKIRN 537
Query: 509 WMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEM-IPDVEVTSDGNTYCFSDGIGK 567
WMG F R+++KCAARMGQ FSS+ T+ VP + + +PD+E N Y FSDGIG
Sbjct: 538 WMGKFTN-RNIAKCAARMGQCFSSTYATVEVPSAEAILDLPDIE----RNNYIFSDGIGM 592
Query: 568 ISLSFARQVAQKCGLS-HTPSAFQIRYGGYKGVIAVDRNSFR--KLSLRRSMLKFESRNR 624
I+ A++VA+K L + P A+QIRY G KGV+A +LSLR SM KF S +
Sbjct: 593 ITPDLAKEVAEKLKLEVNPPCAYQIRYAGCKGVVACWPAHIDGIRLSLRVSMNKFHSNHT 652
Query: 625 MLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQK 684
L + W+ P FLNR+II+LLSTL V DE+F MQ + L +M ++ + A DV+
Sbjct: 653 TLEICSWTRFQPGFLNRQIITLLSTLDVPDEIFWKMQIVMVSKLNQMFMDADVAFDVVTA 712
Query: 685 LNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFD 744
+ + N ML G+ P EP+L ML QL L+ + RI+VP GR L+GC D
Sbjct: 713 -SCAEQGNTAAIMLSAGFNPKTEPHLCGMLTCIRAAQLWGLREKTRIFVPSGRWLMGCLD 771
Query: 745 ETGILNYGQVFVRVTMTREELES---KDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVR 801
E G+L +GQ F++V+ LES K S F K +VKG V+V KNPCLHPGD+R
Sbjct: 772 ELGVLEHGQCFIQVS--NPSLESCFWKHGSRFSESKKKLQVVKGTVVVAKNPCLHPGDIR 829
Query: 802 VLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEP-- 859
+LEAV +L DC++FPQKG+RPH NE SG DLDGD++F++WD +LIP
Sbjct: 830 ILEAVDAPELHHLH--DCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWL 887
Query: 860 PMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHL 919
PM Y ++ ++ V ++I FF M+N+ LGAI AH+VHAD A C+ L
Sbjct: 888 PMQYDAAEAKQLNRPVNHQDIIDFFAKNMVNENLGAICNAHVVHADLSEYGALDENCIKL 947
Query: 920 ATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQI 979
A L + AVDF KTG MP LKPK +PDFM +ED Y S +LG+LYR D
Sbjct: 948 AELAATAVDFPKTGKLVTMPPHLKPKLYPDFMGKEDYQSYNSNKILGRLYRQVKDDYNDD 1007
Query: 980 RSNAIWSEKIAEAS-------YDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGAST 1032
+ + +E + YD DLEV G ++ A K Y+ ++ L+ Y
Sbjct: 1008 DDDDDDAATSSELNLVRGDIPYDKDLEVSGSSDYILDAWDQKCSYDGQLKGLLAQYKVKR 1067
Query: 1033 EDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFG------SSCKENE- 1085
E+E++TG++ S + ++R+ G++K+R+ S +L+ E ++ F E+E
Sbjct: 1068 EEEVVTGHI---WSMPKCNSRKQGELKERLKQSYHSLKKEFRQVFEKMDSDFEQLTEDEK 1124
Query: 1086 ---HPQLASAWYHVTYSPSYCKERM-----------ALLSFPWIVGDILLNIK 1124
+ Q ASAWY V Y P + + M ++LSF WI D L IK
Sbjct: 1125 NLLYEQKASAWYQVAYHPKWVNKSMELQEPDAAGCASMLSFAWIAADYLARIK 1177
>gi|242080895|ref|XP_002445216.1| hypothetical protein SORBIDRAFT_07g006150 [Sorghum bicolor]
gi|241941566|gb|EES14711.1| hypothetical protein SORBIDRAFT_07g006150 [Sorghum bicolor]
Length = 1220
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 359/1006 (35%), Positives = 531/1006 (52%), Gaps = 66/1006 (6%)
Query: 162 CCFKVEILFEDVLETVGFSLDEGATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHIC 221
C FKVE +D+ E + F D+ +L +L P +Y + + V P + +
Sbjct: 227 CDFKVEFFVDDIAELLVFPTDDS-----LLLRLSAAPLLYYRTAADGVHQSVP---FDLL 278
Query: 222 KEDFDFFWVRTTDFSVTKSIG-------CSTSFFWEIKNGLLASDISNIFPFYKEDKTDL 274
+D D W+RTTD + + +IG ++FW LA P D
Sbjct: 279 DDDDDDPWIRTTDITASGAIGRCWMYRISFKTWFWPKMKDALAYMKEKRVPAVVCDIGSP 338
Query: 275 ILEEGEEFCTTSEIVPLVKCRPGFN-LSHEVLFQLNSLVHNQKVSLVAADAELIQILSGL 333
+E + L C L VLF +N LVH V+ ++ +L
Sbjct: 339 GFRVHDEPEFGKPMQDLFLCVQHVEELQFSVLFLVNVLVHKGIVNEHQLTSKFFSLLKRE 398
Query: 334 SMETALMVLQKLHKLKSICYDPVSFVKTQLHVLGRNCKSI-PLSSHKRLIDHNVMSCYRA 392
+ + L +L S +D +K + +N K I P S K D+N + R
Sbjct: 399 EEQVNVAALTELLGENSQVFDVCWRLKNVQDWVAKNPKLIHPRSRGKVAGDYNAV-VRRL 457
Query: 393 LVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALS---TSIQRGI 449
++TP + YC+ P++E SN V++++ A F+RVTF++E L NALS I + +
Sbjct: 458 VITPTRAYCMPPQVERSNRVIRHYHHVADRFLRVTFMDEGMQLLNNNALSFHAAPIVQSM 517
Query: 450 FSK--PYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVR 507
SK ++T+IY R+ T++ G + + Y FLAFS++Q+++ S W FA +A +R
Sbjct: 518 MSKLFQHKTRIYRRVHTLMTKGFHLCGRKYSFLAFSSNQMKDRSAWFFAEEGTTTAATIR 577
Query: 508 GWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDV-EMIPDVEVTSDGNTYCFSDGIG 566
WMG F R+V+K AARMG F+SS T+V +V E++ D+E N Y FSDGIG
Sbjct: 578 EWMGQFPS-RNVAKHAARMGLCFTSSYATVVTRPNEVNELLEDIE----RNGYNFSDGIG 632
Query: 567 KISLSFARQVAQKCGL--SHTPSAFQIRYGGYKGVIAV--DRNSFRKLSLRRSMLKFESR 622
KI+ A +VA + L + PSA+QIRY G+KGVIAV +N +LSLR SM KFES
Sbjct: 633 KITPDLAIEVAARLPLIDRYPPSAYQIRYAGFKGVIAVWPGQNDGIRLSLRPSMRKFEST 692
Query: 623 NRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVL 682
+ ++ V W++ P FLNR+II LL +LGV + +F MQ+ L L ++L +RE A V+
Sbjct: 693 HSVIEVVSWTKFQPAFLNRQIIILLMSLGVPEAIFWEMQEAMLKNLDRILSDREIAYKVV 752
Query: 683 QKLNGVDSKNILVKMLLQ-GYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIG 741
N + + +++L G+ P EP+L MLL+ +QL L + +I+VPKGR L+G
Sbjct: 753 T--NSCPERGTIARLMLSAGFSPATEPHLKAMLLAIKSSQLKGLLKKTKIFVPKGRWLMG 810
Query: 742 CFDETGILNYGQVFVRVT-MTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDV 800
C DE GIL GQ F++ + ++ K S F + + G V+V KNPCLHPGDV
Sbjct: 811 CLDELGILEQGQCFIQASSLSINNHFMKHGSRFSSANKNAVTIVGTVVVAKNPCLHPGDV 870
Query: 801 RVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPC--ETE 858
RVLEAV +L VDC++FP+KGERPHPNE SG DLDGD++F++WD +L+P +
Sbjct: 871 RVLEAVDVPELHH--LVDCLVFPKKGERPHPNEASGSDLDGDVYFVTWDKNLVPPGKRSW 928
Query: 859 PPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLH 918
MDY+ ++ + V ++ FF+ M ++ +G IS AH+VHAD A KC+
Sbjct: 929 KAMDYSPAEAKQLQRRVLQHDLIDFFLKNMASENIGRISNAHVVHADISEYGAMDEKCIQ 988
Query: 919 LATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQ 978
LA L + AVDF KTG MP +L+P ++PDFME++D Y S ++GKLYR I+
Sbjct: 989 LAELAATAVDFPKTGKIVRMPPSLRPTKYPDFMEKDDAISYKSEKIIGKLYRTVRYYILG 1048
Query: 979 IRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILT 1038
+ ++ + + +YD DLEV G F A K YE +NAL+N Y TE E++T
Sbjct: 1049 MPLESLIKDGM--PAYDIDLEVPGASHFFLDAWQWKCAYESRLNALLNQYSGCTEAELVT 1106
Query: 1039 GNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSCKENE----------HPQ 1088
G + + A +R + ++ + L E + F + + + +
Sbjct: 1107 GVIWSLADGRKRKKH---EANEKFSHAYPELHQEFRRVFENIAADQDRMSDEKKNLVYEM 1163
Query: 1089 LASAWYHVTYSPSYCK----------ERMALLSFPWIVGDILLNIK 1124
ASAWY VTY P + + ER A LSFPWI D L IK
Sbjct: 1164 KASAWYQVTYHPEWIRFSREKEPHGEERPARLSFPWIAIDYLACIK 1209
>gi|206598331|gb|ACI16098.1| RNA-directed RNA polymerase 6a [Hordeum vulgare]
Length = 1047
Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust.
Identities = 369/1031 (35%), Positives = 535/1031 (51%), Gaps = 109/1031 (10%)
Query: 162 CCFKVEILFEDVLETVGFSLDEGATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHIC 221
C K+E DV E F LD +L +L P +Y + + + P D
Sbjct: 32 CDVKLEFPVRDVAEVRVFKLD-----CSLLLRLSAVPLVYYRTADDDIHDSVPFDLLDDD 86
Query: 222 KEDFDFFWVRTTDFSVTKSIGCSTSF-------FWEIKNGLLASDISNIFPFYKEDKTDL 274
W+RTTD + + +IG + FW LA Y ++
Sbjct: 87 DP-----WIRTTDITPSGAIGRCRVYRIAFPARFWSKMERALA---------YMGERRVT 132
Query: 275 ILEEGEEFCTTSEIVPLVKCRPGFN---------------LSHEVLFQLNSLVHNQKVSL 319
I+E G + + V+ P F L VLF +N+LVH VS
Sbjct: 133 IVECGGGWGPRRGLT--VRDEPEFGERMQDLFFCVQHAQGLKFPVLFLVNALVHKGVVSQ 190
Query: 320 VAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSFVKTQLHVLGRNCKSIPLSSHK 379
E +L + + L++ +K +D +K + RN K + H
Sbjct: 191 HQLTPEFYGLLQRREDDVNVAALKEFWGIKFPVFDACRRLKNLQDRVARNPKLL----HS 246
Query: 380 RLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPAN 439
++ D + R ++TP YCL P++E SN VV+++ A F++VTF++E +L +N
Sbjct: 247 KIGDDH-SEVRRLVITPTTAYCLPPQVERSNRVVRHYRDAADRFLKVTFMDEGMQQLNSN 305
Query: 440 ALSTS---IQRGIFSKPY---RTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVW 493
L+ S I + + S + +T +Y R+ T L +G + + Y FLAFS++QLR+ S W
Sbjct: 306 VLNFSAAQIVKDLMSNSFLQHKTTVYKRVKTFLTEGFHMCGRKYSFLAFSSNQLRDRSAW 365
Query: 494 MFA---SNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDV-EMIPD 549
FA ++ + E +R WMG F ++V+K ARMGQ FSS+ T+V+ +V E + D
Sbjct: 366 FFAEDRTDRTRTVESIRKWMGRFTS-KNVAKHTARMGQCFSSTYATVVMHPHEVNECLED 424
Query: 550 VEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLS-HTPSAFQIRYGGYKGVIAV--DRNS 606
VE N Y FSDGIGKI+ A +VA+K L+ + PSA+QIRY G+KGVIAV N
Sbjct: 425 VE----RNGYVFSDGIGKITQELALEVAKKLQLTDNPPSAYQIRYAGFKGVIAVWEGEND 480
Query: 607 FRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLI 666
+LSLR SM KFES + +L V W++ P FLNR+II+LLS+L V D +F MQ+ L
Sbjct: 481 GIQLSLRPSMHKFESPHTVLEVVSWTKFQPGFLNRQIITLLSSLNVPDAIFSQMQKDMLS 540
Query: 667 LLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLK 726
L +L + + A DV+ + D N ML G P EP+L +LL+ QL L
Sbjct: 541 NLNNILTDTDVAFDVVTT-SCADEGNTAALMLSAGILPGTEPHLKALLLAIRSTQLLGLL 599
Query: 727 SRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTM-TREELESKDQSFFHRVDDKTSIVKG 785
+ RI+VPKGR L+GC DE GIL GQ F+R + K F ++ + G
Sbjct: 600 EKSRIFVPKGRWLMGCLDELGILEQGQCFIRASSPVLNNSLVKHGPRFSSANNNAETIVG 659
Query: 786 KVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFF 845
V++ KNPCLHPGDVR+LEA+ L VDC++FP+ GERPH NE SG DLDGD++F
Sbjct: 660 TVVMAKNPCLHPGDVRILEAIDVPALHH--LVDCLVFPKNGERPHANEASGSDLDGDLYF 717
Query: 846 ISWDNDLIPCETEP--PMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVH 903
++WD LIP + PMDY+ ++ + VT +I FF+ M+N+ LG IS AH+VH
Sbjct: 718 VTWDEKLIPPGKKSWNPMDYSPAEAKQLPRQVTQSDIVDFFLKNMVNEKLGPISNAHVVH 777
Query: 904 ADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFG 963
AD A KC+ LA L + AVDF KTG MP AL+PK +PDFM ++D Y S
Sbjct: 778 ADMSEYGAMDEKCIQLAELAAFAVDFPKTGKIVSMPPALRPKLYPDFMGKDDAISYKSEK 837
Query: 964 VLGKLYRATLDSIMQIRSNAIWSEK---IAEASYDHDLEVDGFEAFLGVAESHKEMYEEE 1020
+LG+LYR SI + S+ + E+ + + YD D+EV G FL A K YE +
Sbjct: 838 ILGRLYR----SIQEASSSDLVPEETCTLNDLPYDTDMEVPGAADFLSSAWQCKCSYEAQ 893
Query: 1021 MNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGS- 1079
++AL+ YG TE E++T ++ + Y ++R+ GD+K+R+ + L+ E + F S
Sbjct: 894 LDALLKQYGVRTEAELVTEHIWSLPKY---NSRKQGDIKERLKNAYSALRKEYRAIFESV 950
Query: 1080 ---------SCKENEHPQL----ASAWYHVTYSPSYC-KERMAL------------LSFP 1113
+ ++E ++ ASAWY VTY P + + R AL LSF
Sbjct: 951 EAPGQAKAVALDDDERNRVYEMKASAWYQVTYHPKWVERSREALLEPDREEDTPARLSFA 1010
Query: 1114 WIVGDILLNIK 1124
WI + L IK
Sbjct: 1011 WIPVEHLARIK 1021
>gi|297819596|ref|XP_002877681.1| RNA-dependent RNA polymerase 6 [Arabidopsis lyrata subsp. lyrata]
gi|297323519|gb|EFH53940.1| RNA-dependent RNA polymerase 6 [Arabidopsis lyrata subsp. lyrata]
Length = 1197
Score = 540 bits (1391), Expect = e-150, Method: Compositional matrix adjust.
Identities = 353/1018 (34%), Positives = 527/1018 (51%), Gaps = 90/1018 (8%)
Query: 161 DCCFKVEILFEDVLETVGFSLDEGATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHI 220
+C +K+E+L D+ + G ++ +L P+++ + + + P +
Sbjct: 190 NCDYKLELLVRDIQTVRQYKNSHGYV---LILQLASSPRVWYRTADDDIHDTIP-----V 241
Query: 221 CKEDFDFFWVRTTDFSVTKSIGCSTSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGE 280
D D W+RTTDF+ +IG S+ +L S P Y E K LE
Sbjct: 242 DLLDDDDPWIRTTDFTQVGAIGRCHSY------RVLIS------PRY-EKKLTTALEYLR 288
Query: 281 EFCTTSEIV---PLVKCRPGFN---------------LSHEVLFQLNSLVHNQKVSLVAA 322
E V P ++ P F +S E++F +NS++H +
Sbjct: 289 MRRVQEERVRWPPRIRNEPCFGEPVSDHFFCIHHKEGISFEIMFLVNSVLHRGVFNQFQL 348
Query: 323 DAELIQILSGLSMETALMVLQKLHKLKSICYDPVSFVKTQLHVLGRNCKSIPLSSHKRLI 382
+L + + L+ L K +D +K + +N K L H++
Sbjct: 349 TERFFDLLRNQPKDVNIASLKHLCTYKRPVFDAYKRLKLVQEWILKNPKL--LGGHEQ-- 404
Query: 383 DHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALS 442
++ R ++TP + YCL PE+E SN V++ + A F+RVTF++E + +N LS
Sbjct: 405 SEDISEIRRLVITPTRAYCLPPEVELSNRVLRKYRAVAERFLRVTFMDESMQTINSNVLS 464
Query: 443 ---TSIQRGIFSKPY--RTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFAS 497
I + + S + +T ++ R+ +IL DG + + Y FLAFSA+QLR++S W FA
Sbjct: 465 YFVAPIVKDLTSSSFSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDSSAWFFAE 524
Query: 498 NDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTL-VVPVQDVEMIPDVEVTSDG 556
+ + D++ WMG F K ++V+KCAARMG FSS+ T+ V+P + +PD+E
Sbjct: 525 DGKTRVSDIKAWMGKF-KDKNVAKCAARMGLCFSSTYATVDVMPNEVNTELPDIE----R 579
Query: 557 NTYCFSDGIGKISLSFARQVAQKCGLSH--TPSAFQIRYGGYKGVIA--VDRNSFRKLSL 612
N Y FSDGIG I+ A +V +K L TP A+QIRY G+KGV+A + +L+L
Sbjct: 580 NGYVFSDGIGTITPDLADEVMEKLKLDLHCTPCAYQIRYAGFKGVVARWPSKGDGIRLAL 639
Query: 613 RRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKML 672
R SM KF S++ +L + W+ P FLNR+II+LLS LGV DE+F MQ+ L L ++L
Sbjct: 640 RDSMKKFNSKHTILEICSWTRFQPGFLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRIL 699
Query: 673 INREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIY 732
+ + A +VL + + N ML G++P EP+L ML S QL L+ + RI+
Sbjct: 700 DDTDVAFEVLTA-SCAEQGNTAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIF 758
Query: 733 VPKGRLLIGCFDETGILNYGQVFVRVTMTR-EELESKDQSFFHRVDDKTSIVKGKVLVTK 791
V GR L+GC DE G L +GQ F++V+ E SK S F +VKG V + K
Sbjct: 759 VTSGRWLMGCLDEAGKLEHGQCFIQVSKPSIENCFSKHGSRFKETKTDLEVVKGYVAIAK 818
Query: 792 NPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDND 851
NPCLHPGDVR+LEAV +L DC+IFP+KG+RPH NE SG DLDGD++F++WD
Sbjct: 819 NPCLHPGDVRILEAVDVPQLHH--MYDCLIFPKKGDRPHTNEASGSDLDGDLYFVAWDQK 876
Query: 852 LIPC--ETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPD 909
LIP ++ P M Y + + V ++I FF M N+ LG I AH+VHADR
Sbjct: 877 LIPPNRKSYPAMHYDAAEEKTLGRAVNHQDIIDFFARNMANEHLGTICNAHVVHADRSEY 936
Query: 910 KARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLY 969
A +C+ LA L + AVD KTG MP LKPK +PDFM +ED Y S +LG+LY
Sbjct: 937 GAMDEECVLLAELAATAVDSPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSSKILGRLY 996
Query: 970 RATLDSIMQIRSNAIWSEKIAEA-SYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYY 1028
R + + + YD DLE+ GFE + A HK Y+ ++ L+ Y
Sbjct: 997 RRVKEVYDEDAEASSEESSDPSDIPYDIDLEIPGFEDLIPEAWGHKCSYDRQLIGLLGQY 1056
Query: 1029 GASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSCKENE--- 1085
E+EI+TG++ + Y +++ D+K+R+ S +L+ E ++ F + ++E
Sbjct: 1057 KVQKEEEIVTGHIWSMPKYT---SKKQCDLKERLKHSYNSLKKEFRKVFEETILDHEELS 1113
Query: 1086 -------HPQLASAWYHVTYSPSYCKERMAL------------LSFPWIVGDILLNIK 1124
+ + ASAWYHVTY P + K+ + L LSF WI D L IK
Sbjct: 1114 EEEKNILYEKKASAWYHVTYHPKWVKKSLELQDPDEPSSHAVMLSFAWIAADYLAKIK 1171
>gi|15229153|ref|NP_190519.1| RNA-dependent RNA polymerase 6 [Arabidopsis thaliana]
gi|75337188|sp|Q9SG02.1|RDR6_ARATH RecName: Full=RNA-dependent RNA polymerase 6; Short=AtRDRP6; AltName:
Full=Protein SILENCING DEFECTIVE 1; AltName: Full=Protein
SUPPRESSOR OF GENE SILENCING 2; AltName:
Full=RNA-directed RNA polymerase 6
gi|12324444|gb|AAG52184.1|AC012329_11 putative RNA-directed RNA polymerase; 73997-69985 [Arabidopsis
thaliana]
gi|6899955|emb|CAB71285.1| RNA-directed RNA polymerase-like protein [Arabidopsis thaliana]
gi|8164028|gb|AAF73959.1| SGS2 [Arabidopsis thaliana]
gi|332645029|gb|AEE78550.1| RNA-dependent RNA polymerase 6 [Arabidopsis thaliana]
Length = 1196
Score = 540 bits (1390), Expect = e-150, Method: Compositional matrix adjust.
Identities = 380/1147 (33%), Positives = 583/1147 (50%), Gaps = 121/1147 (10%)
Query: 53 VQFTSLDFKSKAQNLSLNDKLVFNSQNLKIS----ETHSDIVPRPVKAQHRVEDGVLHVG 108
V F + +A + + L+ + Q LK+S +S R +++ L +G
Sbjct: 81 VHFAVFESAGRAMDAAGQCNLILDGQPLKVSLGPKNPYSLNQRRRTTVPYKLAGITLEIG 140
Query: 109 VMCKEERLRVLQTFEGVRGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEI 168
+ + V EGV + P +F ++ + +C +K+E+
Sbjct: 141 TLVSRDDFFVSWRAEGVDFLVDPFDNTCKFCFRKSTAFSFKDAVMHA---VINCDYKLEL 197
Query: 169 LFEDVLETVGFSLDEGATVNG--ILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFD 226
L D+ ++ + T++G ++ +L P+++ + + + P D
Sbjct: 198 LVRDIQ-----TVRQYKTLHGFVLILQLASSPRVWYRTADDDIYDTVPGDLLDDDDP--- 249
Query: 227 FFWVRTTDFSVTKSIGCSTSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTTS 286
W+RTTDF+ +IG S+ +L S P Y E+K L+
Sbjct: 250 --WIRTTDFTQVGAIGRCHSY------RVLIS------PRY-ENKLRTALDYFRMRRVQE 294
Query: 287 EIV---PLVKCRPGFN---------------LSHEVLFQLNSLVHNQKVSLVAADAELIQ 328
E V P ++ P F +S E++F +NS++H +
Sbjct: 295 ERVRWPPRIRNEPCFGEPVSDHFFCIHHKEGISFEIMFLVNSVLHRGVFNQFQLTERFFD 354
Query: 329 ILSGLSMETALMVLQKLHKLKSICYDPVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMS 388
+L + + L+ L K +D +K + +N K L SH++ ++
Sbjct: 355 LLRNQPKDVNIASLKHLCTYKRPVFDAYKRLKLVQEWIQKNPKL--LGSHEQ--SEDISE 410
Query: 389 CYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALS---TSI 445
R ++TP + YCL PE+E SN V++ + A F+RVTF++E + +N LS I
Sbjct: 411 IRRLVITPTRAYCLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAPI 470
Query: 446 QRGIFSKPY--RTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSA 503
+ + S + +T ++ R+ +IL DG + + Y FLAFSA+QLR+ S W FA + +
Sbjct: 471 VKDLTSSSFSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTRV 530
Query: 504 EDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEM-IPDVEVTSDGNTYCFS 562
D++ WMG F K ++V+KCAARMG FSS+ T+ V +V+ +PD+E N Y FS
Sbjct: 531 SDIKTWMGKF-KDKNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPDIE----RNGYVFS 585
Query: 563 DGIGKISLSFARQVAQKCGLS--HTPSAFQIRYGGYKGVIA--VDRNSFRKLSLRRSMLK 618
DGIG I+ A +V +K L ++P A+QIRY G+KGV+A ++ +L+LR SM K
Sbjct: 586 DGIGTITPDLADEVMEKLKLDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDSMKK 645
Query: 619 FESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAA 678
F S++ +L + W+ P FLNR+II+LLS LGV DE+F MQ+ L L ++L + + A
Sbjct: 646 FFSKHTILEICSWTRFQPGFLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTDVA 705
Query: 679 LDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRL 738
+VL + + N ML G++P EP+L ML S QL L+ + RI+V GR
Sbjct: 706 FEVLTA-SCAEQGNTAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRW 764
Query: 739 LIGCFDETGILNYGQVFVRVTMTR-EELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHP 797
L+GC DE GIL +GQ F++V+ E SK S F +VKG V + KNPCLHP
Sbjct: 765 LMGCLDEAGILEHGQCFIQVSKPSIENCFSKHGSRFKETKTDLEVVKGYVAIAKNPCLHP 824
Query: 798 GDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPC-- 855
GDVR+LEAV +L DC+IFPQKG+RPH NE SG DLDGD++F++WD LIP
Sbjct: 825 GDVRILEAVDVPQLHH--MYDCLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKLIPPNR 882
Query: 856 ETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSK 915
++ P M Y + + V ++I FF + N+ LG I AH+VHADR A +
Sbjct: 883 KSYPAMHYDAAEEKSLGRAVNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYGAMDEE 942
Query: 916 CLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDS 975
CL LA L + AVDF KTG MP LKPK +PDFM +ED Y S +LG+LYR
Sbjct: 943 CLLLAELAATAVDFPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYR----- 997
Query: 976 IMQIRSNAIWSEKIAEAS-----------YDHDLEVDGFEAFLGVAESHKEMYEEEMNAL 1024
R ++ E AEAS YD LE+ GFE + A HK +Y+ ++ L
Sbjct: 998 ----RVKEVYDED-AEASSEESTDPSAIPYDAVLEIPGFEDLIPEAWGHKCLYDGQLIGL 1052
Query: 1025 MNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSCKEN 1084
+ Y E+EI+TG++ + Y +++ G++K+R+ S +L+ E ++ F + ++
Sbjct: 1053 LGQYKVQKEEEIVTGHIWSMPKYT---SKKQGELKERLKHSYNSLKKEFRKVFEETIPDH 1109
Query: 1085 E----------HPQLASAWYHVTYSPSYCKERM-----------ALLSFPWIVGDILLNI 1123
E + + ASAWYHVTY P + K+ + A+LSF WI D L I
Sbjct: 1110 ENLSEEEKNILYEKKASAWYHVTYHPEWVKKSLELQDPDESSHAAMLSFAWIAADYLARI 1169
Query: 1124 KSVNSRK 1130
K + SR+
Sbjct: 1170 K-IRSRE 1175
>gi|167995454|gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]
Length = 1197
Score = 540 bits (1390), Expect = e-150, Method: Compositional matrix adjust.
Identities = 360/1006 (35%), Positives = 537/1006 (53%), Gaps = 69/1006 (6%)
Query: 162 CCFKVEILFEDVLETVGFSLDEGATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHIC 221
C FK+E L ++ E + D + V IL +L P ++ + + + D
Sbjct: 192 CNFKIEFLVREINE-IKKCKDFTSLV--ILLQLASSPLVFYRTADDDIEESVAFDLL--- 245
Query: 222 KEDFDFFWVRTTDFSVTKSIGCSTSFFWEIK--NGLLASDISNIFPFYKEDKTDL----- 274
D D W+RTTD + + +IG ++ I+ NG F F++ ++
Sbjct: 246 --DDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCNRKM 303
Query: 275 --ILEEGEEFCTTSEIVPLVKCRPGFNLSHEVLFQLNSLVHNQKVSLVAADAELIQILSG 332
+ +E + + S+ P C +S +V+F +N+++H V+ E +L
Sbjct: 304 LRVRDEPDFGVSMSD--PFF-CFQNEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLRS 360
Query: 333 LSMETALMVLQKLHKLKSICYDPVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRA 392
E L L+ + K D + + L +N K + + +D +++ R
Sbjct: 361 HQEEVNLAALKHMFSYKWPVNDAIQKLVGIRKWLLKNPKLLERTGE---LD-DIVEVRRL 416
Query: 393 LVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALS---TSIQRGI 449
++TP K YCL P +E SN V++N+ A F+RVTF++E L N L+ +I R I
Sbjct: 417 VITPTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREI 476
Query: 450 FSK--PYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVR 507
S P RT I+ R+ +IL G + + Y FLAFSA+QLR+ S W FA + ++ +
Sbjct: 477 TSNSNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGII 536
Query: 508 GWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEM-IPDVEVTSDGNTYCFSDGIG 566
WMG F+ R+V+KCAARMGQ FSS+ T+ VP +V +PD+E N Y FSDGIG
Sbjct: 537 SWMGRFSN-RNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIE----RNGYVFSDGIG 591
Query: 567 KISLSFARQVAQKCGLS-HTPSAFQIRYGGYKGVIAV--DRNSFRKLSLRRSMLKFESRN 623
IS A +VA+K LS + PSA+QIRY G KGV+A +N +LSLR SM KF+S +
Sbjct: 592 MISADLAVEVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNH 651
Query: 624 RMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQ 683
+L + W+ P FLNR+I++LLS+L VKD +F MQ++ + L KML++ + A DV+
Sbjct: 652 TILEICSWTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVIT 711
Query: 684 KLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCF 743
+ ++ N ML G++P EP+L ML S +QL DL+++ RI+VP GR L+GC
Sbjct: 712 A-SCAEAGNTAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCL 770
Query: 744 DETGILNYGQVFVRVTM-TREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRV 802
DE G L GQ F++V+ + E K F + +VKG V++ KNPCLHPGDVR+
Sbjct: 771 DELGELEQGQCFIQVSSPSLENCFIKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRI 830
Query: 803 LEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEP--P 860
LEAV L DC++FPQKG+RPH NE SG DLDGD++F++WD +LIP + P
Sbjct: 831 LEAVDVPGLHH--LYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIP 888
Query: 861 MDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLA 920
M+Y + M V +I FF M+ ++LG I AH+VHAD A KCL LA
Sbjct: 889 MNYEPAEVKQMGRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLA 948
Query: 921 TLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIR 980
L ++AVDF KTG MP LKPK +PDFM +E+ Y S +LGKLYR D
Sbjct: 949 ELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDTEG 1008
Query: 981 SNAIWSEKIA-EASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTG 1039
+ E + + YD LE+ G AF+ A + K Y+ +++ L+ Y + E+E++TG
Sbjct: 1009 EVSAGLELVPNDIPYDSSLEIPGSTAFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTG 1068
Query: 1040 NLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWF----------GSSCKENEHPQL 1089
++ + Y ++ G++K+R+ + L+ E + F K + + +
Sbjct: 1069 HIWSMPKY---SAKKQGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERK 1125
Query: 1090 ASAWYHVTYSPSYCKERMAL-----------LSFPWIVGDILLNIK 1124
ASAWY VTY+P + + L LSF WI D L IK
Sbjct: 1126 ASAWYQVTYNPHWVARSLELQLPDAVSSTVMLSFAWIAADYLARIK 1171
>gi|168067479|ref|XP_001785643.1| RNA-directed RNA polymerase [Physcomitrella patens subsp. patens]
gi|162662723|gb|EDQ49541.1| RNA-directed RNA polymerase [Physcomitrella patens subsp. patens]
Length = 1049
Score = 537 bits (1384), Expect = e-149, Method: Compositional matrix adjust.
Identities = 357/1030 (34%), Positives = 534/1030 (51%), Gaps = 100/1030 (9%)
Query: 158 DSSDCCFKVEILFEDVLETVGFSLDEGATVNGILFKLKYGPKI--YQKVSGPHVASKFPS 215
D+ C FK+E+ V E G ++ + P + Y+ G V P
Sbjct: 56 DTEPCEFKLEL---SVKEVRKIQTQRGRMPEMMIVMQLFSPPLISYRTSQGDGVYCTTP- 111
Query: 216 DRYHICKEDFDFFWVRTTDFSVTKSIGCSTSFFWEIKNGLLASDISNIFPFYKEDKTDLI 275
+ D + W+RT DFS +SIG ++ ++ + PF + D
Sbjct: 112 ----VPLPDDEDPWIRTVDFSPHRSIGRCLTYIISVRP-------TEYTPFRR--MMDFF 158
Query: 276 LEE---GEEFCTTSEIVPLVKCRPGFN---------LSHEVLFQLNSLVHNQKVSLVAAD 323
+E+ G + + + C+ G N + E++F +N+LVH +++ +
Sbjct: 159 MEQRLCGSVLQNLNFLYEEIDCKKGQNYFFVHHQKGVPFELMFLVNALVHRGIINMTSLT 218
Query: 324 AELIQILSGLSMETALMVLQKLHKLKSICYDPVSFVKTQLHVLGRNCKSIPLSSHKRLID 383
E + + +L LQ + ++ V V+ +N K ++ +
Sbjct: 219 QEFYETVMS-DRAVSLFALQHMLTYTHPVFNAVLRVQQVQEWTRKNDK---FRQGEKALA 274
Query: 384 HNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALST 443
+ YR L TP + C P + SN V++++ + F+RV+FV+ED ++ +L+
Sbjct: 275 FGSILMYRVLFTPTRGICTLPVVSRSNRVLRHYHTLSDRFLRVSFVDEDLHQISPGSLTV 334
Query: 444 SIQRGI--FSKPY---RTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASN 498
+ R + S Y RT+I+ RIL I+++G + + Y FLAFS+SQ+R S W FAS
Sbjct: 335 PVSRSVRCLSSTYEYNRTEIHRRILDIVENGFKLCGRQYSFLAFSSSQMRGGSAWFFAST 394
Query: 499 DEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNT 558
V+ +R WMG F ++V+K AARMGQ FS S TL V V +PDV N
Sbjct: 395 GNVNTHLIRQWMGKFPS-QNVAKYAARMGQCFSCSFPTLPVLKAMVRKLPDVV----RNG 449
Query: 559 YCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAV----DRNSFRKLSLRR 614
Y FSDG G I+ FA +V+ L +TPS +QIRY GYKGV++ R+S L LR
Sbjct: 450 YIFSDGCGMIAPDFALRVSLSLKLDYTPSVYQIRYAGYKGVVSTWPIPGRHS--HLGLRD 507
Query: 615 SMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLIN 674
SM KFES + L V WS+ +PC+LNR+II LLSTL V++ VF+++Q Q+ L ML +
Sbjct: 508 SMKKFESGHTELEVVNWSKYLPCYLNRQIICLLSTLKVENAVFKSLQDAQVARLKAMLGD 567
Query: 675 REAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVP 734
A +++ + DS + ML G+ P EP+L +L+S + L DL S+ RI+VP
Sbjct: 568 PNQAYEIVTT-SCSDSHSTAATMLRGGFLPLKEPHLYELLVSIKFSLLEDLVSKARIFVP 626
Query: 735 KGRLLIGCFDETGILNYGQVFVRVT--MTREELESKDQSFFHRVDDKTSIVKGKVLVTKN 792
GR +IGC DETG+LNYGQ F+ V+ +++ L + H ++ GKV++ KN
Sbjct: 627 NGRWVIGCMDETGLLNYGQCFIHVSGPVSKACLGGDGNNLGH--SGLLQVITGKVIMVKN 684
Query: 793 PCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDL 852
PCLHPGD+R+LEAV +L VDC++ PQ G RPHPNE SG DLDGD++F WD +L
Sbjct: 685 PCLHPGDIRILEAVDLPELHS--MVDCLVLPQNGPRPHPNEVSGSDLDGDVYFTCWDPNL 742
Query: 853 IPCETEP--PMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDK 910
IP E PM+Y S+I+ ++++ FFV+ M+ND LG IS AH+ AD+ P+
Sbjct: 743 IPPSGESWEPMEYAAHDSKILYRPANIKDVKNFFVNSMMNDKLGFISNAHVARADKSPEG 802
Query: 911 ARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYR 970
A S CL LA L S+AVDF KTG A MP L+ E+PDFME+E Y S V+G+LYR
Sbjct: 803 ALDSDCLRLAHLASIAVDFPKTGKNATMPHDLRVNEWPDFMEKEGAVTYQSNKVIGELYR 862
Query: 971 ATLDSI------MQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNAL 1024
+ + Q NA+ + I YD+DL+V G+E +L A + K Y+ ++ +
Sbjct: 863 SVTKFLKAEVEQHQHADNAVDLDSI----YDYDLQVPGYEVYLDDAWTKKISYDRQLRCM 918
Query: 1025 MNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDR---ILLSAKNLQNE--------- 1072
M ++ E ++ L+ + L+ NR GD + +L Q E
Sbjct: 919 MTHFNVQREAALIASWLKRGSPGLRSVNRNRGDAFAQSYGVLYEEFRAQFEGLKKGLDPD 978
Query: 1073 --AKEWFGSSCKENEHP----QLASAWYHVTYSPSYCKERM------------ALLSFPW 1114
+++ SS E + P ASAWYHVTY P + ++ + LLSFPW
Sbjct: 979 GYSEDMVESSSSEIKGPTDFAAKASAWYHVTYHPEWKQKALEIFENSGESSPRPLLSFPW 1038
Query: 1115 IVGDILLNIK 1124
I +L NIK
Sbjct: 1039 ITASVLSNIK 1048
>gi|51989472|gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana]
Length = 1197
Score = 537 bits (1384), Expect = e-149, Method: Compositional matrix adjust.
Identities = 358/1005 (35%), Positives = 535/1005 (53%), Gaps = 69/1005 (6%)
Query: 162 CCFKVEILFEDVLETVGFSLDEGATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHIC 221
C FK+E + ++ E F D + V IL +L P ++ + + + D
Sbjct: 192 CNFKIEFMVREINEIKKFK-DFTSLV--ILLQLASSPLVFYRTADDDIEESVAFDLL--- 245
Query: 222 KEDFDFFWVRTTDFSVTKSIGCSTSFFWEIK--NGLLASDISNIFPFYKEDKTDL----- 274
D D W+RTTD + + +IG ++ I+ NG F F++ ++
Sbjct: 246 --DDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCNRKM 303
Query: 275 --ILEEGEEFCTTSEIVPLVKCRPGFNLSHEVLFQLNSLVHNQKVSLVAADAELIQILSG 332
+ +E + + S+ P C +S +V+F +N+++H V+ E +L
Sbjct: 304 LRVRDEPDFGVSMSD--PFF-CFQNEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLRS 360
Query: 333 LSMETALMVLQKLHKLKSICYDPVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRA 392
E L L+ + K D + + L +N K + + +D +++ R
Sbjct: 361 HQEEVNLAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLERTGE---LD-DIVEVRRL 416
Query: 393 LVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALS---TSIQRGI 449
++TP K YCL P +E SN V++N+ A F+RVTF++E L N L+ +I R I
Sbjct: 417 VITPTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREI 476
Query: 450 FSK--PYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVR 507
S P RT I+ R+ +IL G + + Y FLAFSA+QLR+ S W FA + ++ +
Sbjct: 477 TSNSNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGII 536
Query: 508 GWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEM-IPDVEVTSDGNTYCFSDGIG 566
WMG F+ R+V+KCAARMGQ FSS+ T+ VP +V +PD+E N Y FSDGIG
Sbjct: 537 SWMGRFSN-RNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIE----RNGYVFSDGIG 591
Query: 567 KISLSFARQVAQKCGLS-HTPSAFQIRYGGYKGVIAV--DRNSFRKLSLRRSMLKFESRN 623
IS A +VA+K LS + PSA+QIRY G KGV+A +N LSLR SM KF+S +
Sbjct: 592 MISADLALEVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGILLSLRPSMKKFDSNH 651
Query: 624 RMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQ 683
+L + W+ P FLNR+I++LLS+L VKD +F MQ++ + L KML++ + A DV+
Sbjct: 652 TILEICSWTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLNKMLVDSDVAFDVIT 711
Query: 684 KLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCF 743
+ ++ N ML G++P EP+L ML S +QL DL+++ RI+VP GR L+GC
Sbjct: 712 A-SCAEAGNTAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCL 770
Query: 744 DETGILNYGQVFVRVTM-TREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRV 802
DE G L GQ F++V+ + E K F + +VKG V++ KNPCLHPGDVR+
Sbjct: 771 DELGELEQGQCFIQVSSPSLENCFIKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRI 830
Query: 803 LEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEP--P 860
LEAV L DC++FPQKG+RPH NE SG DLDGD++F++WD +LIP + P
Sbjct: 831 LEAVDVPGLHH--LYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIP 888
Query: 861 MDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLA 920
M+Y + + V +I FF M+ ++LG I AH+VHAD A KCL LA
Sbjct: 889 MNYEPAEVKQLGRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLA 948
Query: 921 TLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIR 980
L ++AVDF KTG MP LKPK +PDFM +E+ Y S +LGKLYR D
Sbjct: 949 ELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDTEG 1008
Query: 981 SNAIWSEKIA-EASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTG 1039
+ E + + YD LE+ G F+G A + K Y+ +++ L+ Y + E+E++TG
Sbjct: 1009 EVSAGLELVPNDIPYDSSLEIPGSTVFMGDAWNCKCSYDGQLHGLLGQYKVNREEEVVTG 1068
Query: 1040 NLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWF----------GSSCKENEHPQL 1089
++ + Y ++ G++K+R+ + L+ E + F K + + +
Sbjct: 1069 HIWSMPKY---SAKKQGELKERLKHAYNMLRKEFRNVFERMDPDFDLLPDDEKNDMYERK 1125
Query: 1090 ASAWYHVTYSPSYCKERMAL-----------LSFPWIVGDILLNI 1123
ASAWY VTY+P + + L LSF WI D L I
Sbjct: 1126 ASAWYQVTYNPHWVARSLELQLPDAVSSTVMLSFAWIAADYLARI 1170
>gi|226596555|gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]
Length = 1197
Score = 537 bits (1384), Expect = e-149, Method: Compositional matrix adjust.
Identities = 359/1006 (35%), Positives = 535/1006 (53%), Gaps = 69/1006 (6%)
Query: 162 CCFKVEILFEDVLETVGFSLDEGATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHIC 221
C FK+E L ++ E + D + V IL +L P ++ + + + D
Sbjct: 192 CNFKIEFLVREINE-IKKCKDFMSLV--ILLQLASSPLVFYRTADDDIEESVAFDLL--- 245
Query: 222 KEDFDFFWVRTTDFSVTKSIGCSTSFFWEIK--NGLLASDISNIFPFYKEDKTDL----- 274
D D W+RTTD + + +IG ++ I+ NG F F++ ++
Sbjct: 246 --DDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCNRKM 303
Query: 275 --ILEEGEEFCTTSEIVPLVKCRPGFNLSHEVLFQLNSLVHNQKVSLVAADAELIQILSG 332
+ +E + + S+ P C +S +VLF N+++H V+ E +L
Sbjct: 304 LRVRDEPDFGVSMSD--PFF-CFQNEGISFKVLFLANAVLHKGIVNQHQMINEFFYLLRS 360
Query: 333 LSMETALMVLQKLHKLKSICYDPVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRA 392
E L L+ + K D + + L +N K + + +D +++ R
Sbjct: 361 HQEEVNLAALKHMFSYKWPVNDAIQKLAGIQKWLLKNPKLLERTGE---LD-DIVEVRRL 416
Query: 393 LVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALS---TSIQRGI 449
++TP K YCL P +E SN V++N+ A F+RVTF++E L N L+ +I R I
Sbjct: 417 VITPTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREI 476
Query: 450 FSK--PYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVR 507
S P RT I+ R+ +IL G + + Y FLAFSA+QLR+ S W FA + ++ +
Sbjct: 477 TSNSNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGII 536
Query: 508 GWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEM-IPDVEVTSDGNTYCFSDGIG 566
WMG F+ R+V+KCAARMGQ FSS+ T+ VP +V +PD+E N Y FSDGIG
Sbjct: 537 SWMGRFSN-RNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIE----RNGYVFSDGIG 591
Query: 567 KISLSFARQVAQKCGLS-HTPSAFQIRYGGYKGVIAV--DRNSFRKLSLRRSMLKFESRN 623
IS A +VA+K LS + P+A+QIRY G KGV+A +N +LSLR SM KF+S +
Sbjct: 592 MISADLAIEVAEKLHLSVNPPAAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNH 651
Query: 624 RMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQ 683
+L + W+ P FLNR+I++LLS+L VKD +F MQ++ + L KML++ + A DV+
Sbjct: 652 TILEICSWTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMIAGLDKMLVDSDVAFDVIT 711
Query: 684 KLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCF 743
+ ++ N ML G++P EP+L ML S +QL DL+++ RI+VP GR L+GC
Sbjct: 712 A-SCAEAGNTAALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCL 770
Query: 744 DETGILNYGQVFVRVTM-TREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRV 802
DE G L GQ F++V+ + E K S F + +VKG V++ KNPCLHPGDVR+
Sbjct: 771 DELGELEQGQCFIQVSSPSLENCFVKHGSKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRI 830
Query: 803 LEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEP--P 860
LEAV L DC++FPQKG+RPH NE SG DLDGD++F++WD ++IP + P
Sbjct: 831 LEAVDVPSLSH--LYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENIIPPSKKSWIP 888
Query: 861 MDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLA 920
M+Y + + V +I FF M+ ++LG I AH+VHAD A KCL LA
Sbjct: 889 MNYEPAEVKQLGRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLA 948
Query: 921 TLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIR 980
L ++AVDF KTG MP LKPK +PDFM +E+ Y S +LGKLYR D
Sbjct: 949 ELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEG 1008
Query: 981 SNAIWSEKIA-EASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTG 1039
+ E + + YD LE+ G F+ A + K Y+ ++N L+ Y + E+E++TG
Sbjct: 1009 EVSAGLEVVPKDIPYDTTLEILGSTTFIDDAWNSKCSYDGQLNGLLGQYKVNREEEVVTG 1068
Query: 1040 NLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWF----------GSSCKENEHPQL 1089
++ + Y ++ G++K+R+ + L+ E + F K + + +
Sbjct: 1069 HIWSMPKY---SAKKQGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERK 1125
Query: 1090 ASAWYHVTYSPSYCKERMAL-----------LSFPWIVGDILLNIK 1124
ASAWY VTY P + + L LSF WI D L IK
Sbjct: 1126 ASAWYQVTYHPHWVARSLELQIPDAVSSTVMLSFAWIAADYLARIK 1171
>gi|297748117|gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
Length = 1197
Score = 537 bits (1383), Expect = e-149, Method: Compositional matrix adjust.
Identities = 360/1008 (35%), Positives = 532/1008 (52%), Gaps = 63/1008 (6%)
Query: 162 CCFKVEILFEDVLETVGFSLDEGATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHIC 221
C FK+E L ++ E + D + V ILF+L P ++ + + + D
Sbjct: 192 CNFKIEFLVREINE-IKKCKDFTSLV--ILFQLASSPLVFYRTADDDIEESVAFDLL--- 245
Query: 222 KEDFDFFWVRTTDFSVTKSIGCSTSFFWEIK--NGLLASDISNIFPFYKEDKTDL----I 275
D D W+RTTD + + +IG ++ I+ NG F F + ++ +
Sbjct: 246 --DDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFRRVPMVEMCNRKM 303
Query: 276 LEEGEEFCTTSEIVPLVKCRPGFNLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSM 335
L +E + C +S VLF +N+++H V+ E +L
Sbjct: 304 LRVKDEPDFGVSMSDPFFCFQNEGISFRVLFLVNAVLHKGIVNQHQMANEFFYLLRSHQE 363
Query: 336 ETALMVLQKLHKLKSICYDPVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVT 395
E L+ + K D + + L +N K + + +D +++ R ++T
Sbjct: 364 EVNSAALKHMFSYKWPVNDAIQKLAGIQKWLLKNPKLLDRTGE---LD-DIVEVRRLVIT 419
Query: 396 PMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALS---TSIQRGIFSK 452
P K YCL P +E SN V++N+ A F+RVTF++E L N L+ +I R I S
Sbjct: 420 PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479
Query: 453 --PYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWM 510
P RT I+ R+ +IL G + + Y FLAFSA+QLR+ S W FA + ++ + WM
Sbjct: 480 SNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539
Query: 511 GCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEM-IPDVEVTSDGNTYCFSDGIGKIS 569
G F+ R+V+KCAARMGQ FSS+ T+ VP +V +PD+E N Y FSDGIG IS
Sbjct: 540 GRFSN-RNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIE----RNGYVFSDGIGMIS 594
Query: 570 LSFARQVAQKCGLS-HTPSAFQIRYGGYKGVIAV--DRNSFRKLSLRRSMLKFESRNRML 626
A +VA+K LS + PSA+QIRY G KGV+A +N +LSLR SM KF+S + +L
Sbjct: 595 ADLAIEVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTIL 654
Query: 627 NVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLN 686
+ W+ P FLNR+I++LLS+L VKD +F MQ++ + L KML++ + A DV+ +
Sbjct: 655 EICSWTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITA-S 713
Query: 687 GVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDET 746
++ N ML G++P EP+L ML S +QL DL+++ RI+VP GR L+GC DE
Sbjct: 714 CAEAGNTAALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDEL 773
Query: 747 GILNYGQVFVRVTM-TREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEA 805
G L GQ F++V+ + E K F + +VKG V++ KNPCLHPGDVR+LEA
Sbjct: 774 GELEQGQCFIQVSSPSLENCFVKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEA 833
Query: 806 VYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEP--PMDY 863
V L DC++FPQKG+RPH NE SG DLDGD++F++WD +LIP + PM+Y
Sbjct: 834 VDVPSLSH--LYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNY 891
Query: 864 TGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLH 923
+ + V +I FF M+ ++LG I AH+VHAD A KCL LA L
Sbjct: 892 EPAEVKQLGRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELA 951
Query: 924 SMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNA 983
++AVDF KTG MP LKPK +PDFM +E+ Y S +LGKLYR D +
Sbjct: 952 ALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVS 1011
Query: 984 IWSEKIA-EASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLR 1042
E + + YD LE+ G F+ A + K Y+ ++N L+ Y + E+E++TG +
Sbjct: 1012 AGLEVVPKDIPYDTTLEILGSTTFIDDAWNSKCSYDGQLNGLLGQYKVNREEEVVTGYIW 1071
Query: 1043 NRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWF----------GSSCKENEHPQLASA 1092
+ Y + ++ G++K+R+ + L+ E + F K + + + ASA
Sbjct: 1072 SMPKY---NAKKQGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASA 1128
Query: 1093 WYHVTYSPSYCKERMAL-----------LSFPWIVGDILLNIKSVNSR 1129
WY VTY P + + L LSF WI D L IK + R
Sbjct: 1129 WYQVTYHPHWVARSLELQLADAVSNTVMLSFAWIAADYLARIKIRHRR 1176
>gi|194719815|emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
Length = 1197
Score = 536 bits (1381), Expect = e-149, Method: Compositional matrix adjust.
Identities = 357/1003 (35%), Positives = 532/1003 (53%), Gaps = 63/1003 (6%)
Query: 162 CCFKVEILFEDVLETVGFSLDEGATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHIC 221
C FK+E L ++ E + D + V ILF+L P ++ + + + D
Sbjct: 192 CNFKIEFLVREINE-IKKCKDFTSLV--ILFQLASSPLVFYRTADDDIEESVAFDLL--- 245
Query: 222 KEDFDFFWVRTTDFSVTKSIGCSTSFFWEIK--NGLLASDISNIFPFYKEDKTDL----I 275
D D W+RTTD + + +IG ++ I+ NG F F + ++ +
Sbjct: 246 --DDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFRRVPMVEMCNRKM 303
Query: 276 LEEGEEFCTTSEIVPLVKCRPGFNLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSM 335
L +E + C +S +V+F +N+++H V+ E +L
Sbjct: 304 LRVKDEPDFGVSMSDPFFCFQNEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLRSRQE 363
Query: 336 ETALMVLQKLHKLKSICYDPVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVT 395
E L L+ + K D + + L +N K + + +D +++ R ++T
Sbjct: 364 EVNLAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLERTGE---LD-DIVEVRRLVIT 419
Query: 396 PMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALS---TSIQRGIFSK 452
P K YCL P +E SN V++N+ A F+RVTF++E L N L+ +I R I S
Sbjct: 420 PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479
Query: 453 --PYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWM 510
P RT I+ R+ +IL G + + Y FLAFSA+QLR+ S W FA + ++ + WM
Sbjct: 480 SNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539
Query: 511 GCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEM-IPDVEVTSDGNTYCFSDGIGKIS 569
G F+ R+V+KCAARMGQ FSS+ T+ VP +V +PD+E N Y FSDGIG IS
Sbjct: 540 GRFSN-RNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIE----RNGYVFSDGIGMIS 594
Query: 570 LSFARQVAQKCGLS-HTPSAFQIRYGGYKGVIAV--DRNSFRKLSLRRSMLKFESRNRML 626
A +VA+K L+ + PSA+QIRY GYKGV+A +N LSLR SM KF+S + +L
Sbjct: 595 ADLAIEVAEKLHLNVNPPSAYQIRYAGYKGVVACWPTKNDGILLSLRPSMKKFDSNHTIL 654
Query: 627 NVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLN 686
+ W+ P FLNR+I++LLS+L VKD +F MQ++ + L KML++ + A DV+ +
Sbjct: 655 EICSWTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITA-S 713
Query: 687 GVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDET 746
++ N ML G++P EP+L ML S +QL DL+++ RI+VP GR L+GC DE
Sbjct: 714 CAEAGNTAALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDEL 773
Query: 747 GILNYGQVFVRVTM-TREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEA 805
G L GQ F++V+ + E K F + +VKG V++ KNPCLHPGDVR+LEA
Sbjct: 774 GELEQGQCFIQVSSPSLENCFVKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEA 833
Query: 806 VYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEP--PMDY 863
V L DC++FPQKG+RPH NE SG DLDGD++F++WD +LIP + PM+Y
Sbjct: 834 VDVPSLSH--LYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNY 891
Query: 864 TGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLH 923
+ + V +I FF M+ ++LG I AH+VHAD A KCL LA L
Sbjct: 892 EPAEVKQLGRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELA 951
Query: 924 SMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNA 983
++AVDF KTG MP LKPK +PDFM +E+ Y S +LGKLYR D +
Sbjct: 952 ALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVS 1011
Query: 984 IWSEKIA-EASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLR 1042
E + + YD L + G F+ A + K Y+ +++ L+ Y + E+E++TG++
Sbjct: 1012 AGLEVVPKDIPYDTTLVIPGSTVFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIW 1071
Query: 1043 NRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWF----------GSSCKENEHPQLASA 1092
+ Y ++ G++K+R+ + L+ E + F K + + + ASA
Sbjct: 1072 SMPKY---SAKKQGELKERLKHAYNTLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASA 1128
Query: 1093 WYHVTYSPSYCKERMAL-----------LSFPWIVGDILLNIK 1124
WY VTY+P + + L LSF WI D L IK
Sbjct: 1129 WYQVTYNPHWVARSLELQLPDAISSTVMLSFAWIAADYLARIK 1171
>gi|163930853|dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
Length = 1197
Score = 535 bits (1378), Expect = e-149, Method: Compositional matrix adjust.
Identities = 357/1008 (35%), Positives = 535/1008 (53%), Gaps = 63/1008 (6%)
Query: 162 CCFKVEILFEDVLETVGFSLDEGATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHIC 221
C FK+E + ++ E + D + V IL +L P ++ + + + D
Sbjct: 192 CNFKIEFMVREINE-IKKCKDFTSLV--ILLQLASSPLVFYRTADDDIEESVAFDLL--- 245
Query: 222 KEDFDFFWVRTTDFSVTKSIGCSTSFFWEIK--NGLLASDISNIFPFYKEDKTDL----I 275
D D W+RTTD + + +IG ++ I+ NG F F++ ++ +
Sbjct: 246 --DDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCNRKM 303
Query: 276 LEEGEEFCTTSEIVPLVKCRPGFNLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSM 335
L +E + C +S +V+F +N+++H V+ E +L
Sbjct: 304 LRVKDEPDFGVSMSDPFFCFQNEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLRSRQE 363
Query: 336 ETALMVLQKLHKLKSICYDPVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVT 395
E L+ + K D + + L +N K + + +D +++ R ++T
Sbjct: 364 EVNSAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLDRTGE---LD-DIVEVRRLVIT 419
Query: 396 PMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALS---TSIQRGIFSK 452
P K YCL P +E SN V++N+ A F+RVTF++E L N L+ +I R I S
Sbjct: 420 PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479
Query: 453 --PYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWM 510
P RT I+ R+ +IL G + + Y FLAFSA+QLR+ S W FA + ++ + WM
Sbjct: 480 SNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539
Query: 511 GCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEM-IPDVEVTSDGNTYCFSDGIGKIS 569
G F+ R+V+KCAARMGQ FSS+ T+ VP ++V +PD+E N Y FSDGIG IS
Sbjct: 540 GRFSN-RNVAKCAARMGQCFSSTYATVEVPSREVNSELPDIE----RNGYVFSDGIGMIS 594
Query: 570 LSFARQVAQKCGLS-HTPSAFQIRYGGYKGVIAV--DRNSFRKLSLRRSMLKFESRNRML 626
A +VA+K LS + PSA+QIRY G KGV+A +N +LSLR SM KF+S + +L
Sbjct: 595 ADLAIEVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTIL 654
Query: 627 NVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLN 686
+ W+ P FLNR+I++LLS+L VKD +F MQ++ + L KML++ + A DV+ +
Sbjct: 655 EICSWTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITA-S 713
Query: 687 GVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDET 746
++ N ML G++P EP+L ML S +QL DL+++ RI+VP GR L+GC DE
Sbjct: 714 CAEAGNTAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDEL 773
Query: 747 GILNYGQVFVRVTM-TREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEA 805
G L GQ F++V+ + E K F + +VKG V++ KNPCLHPGDVR+LEA
Sbjct: 774 GELEQGQCFIQVSSPSLENCFVKHGPKFSDIKQNLQVVKGLVVIAKNPCLHPGDVRILEA 833
Query: 806 VYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEP--PMDY 863
V L DC++FPQKG+RPH NE SG DLDGD++F++WD +LIP + PM+Y
Sbjct: 834 VDVPSLSH--LYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNY 891
Query: 864 TGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLH 923
+ + V +I FF M+ ++LG I AH+VHAD A KCL LA L
Sbjct: 892 EPAEVKQLGRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELA 951
Query: 924 SMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNA 983
++AVDF KTG MP LKPK +PDFM +E+ Y S +LGKLYR D +
Sbjct: 952 ALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVS 1011
Query: 984 IWSEKIA-EASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLR 1042
E + + YD LE+ G AF+ A + K Y+ +++ L+ Y + E+E++TG++
Sbjct: 1012 AGLEVVPKDIPYDSTLEILGSTAFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIW 1071
Query: 1043 NRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWF----------GSSCKENEHPQLASA 1092
+ Y ++ G++K+R+ + L+ E + F K + + + ASA
Sbjct: 1072 SMPKY---SAKKQGELKERLKHAYNTLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASA 1128
Query: 1093 WYHVTYSPSYCKERMAL-----------LSFPWIVGDILLNIKSVNSR 1129
WY VTY P + + L LSF WI D L IK + R
Sbjct: 1129 WYQVTYHPHWVARSLELQLPDAVSNTVMLSFAWIAADYLARIKIRHRR 1176
>gi|413955011|gb|AFW87660.1| hypothetical protein ZEAMMB73_096378 [Zea mays]
Length = 1901
Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust.
Identities = 364/1019 (35%), Positives = 530/1019 (52%), Gaps = 87/1019 (8%)
Query: 162 CC-FKVEILFEDVLETVGFSLDEGATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHI 220
CC K+E V E + F D + ++ +L P +Y + SG V + P + +
Sbjct: 908 CCDVKLEFALAHVAEALAFQAD-----DSLVLRLSAAPLVYYRTSGDDVHGRVP---FQL 959
Query: 221 CKEDFDFFWVRTTDFSVTKSIGCSTSF-------FWEIKNGLLASDISNIFPFYKEDKTD 273
D D W+RTTD + + +IG ++ FW L P + D+
Sbjct: 960 VDADDDP-WIRTTDVTRSGAIGRCLAYRVSFAVQFWPTMRVALECMQRQGVPVHVRDRRC 1018
Query: 274 ---LILEEGE--EFCTTSEIVPLVKCRPGFNLSHEVLFQLNSLVHNQKVSLVAADAELIQ 328
+LEE + + P G L L+ +N L+HN V+ E
Sbjct: 1019 QGFTVLEEAGLVQPMRDAFFSPRHDDDAGAGLRFPELYLVNVLMHNGVVNPHQMTPEFFG 1078
Query: 329 ILSGLSMETALMVLQKLHKLK-SICYDPVSFVKTQLHVLGRN----CKSIPLSSHKRLID 383
+L + + L +L K +C +P +K +N C+S D
Sbjct: 1079 LLMRTREDVNVAALTELFGAKLGVCDNPCWRLKNAQDKAAKNLDLVCRSSSSRRKASDCD 1138
Query: 384 HNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANAL-- 441
V R +VTP + YC+ P++E SN V++++ + + F+RVTF +E L NAL
Sbjct: 1139 AEVR---RLIVTPTREYCMPPQVERSNRVIRHYHELSDRFLRVTFTDEGMLPLNPNALTL 1195
Query: 442 ----STSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFAS 497
STS + T +Y R+ T L +G+++ + Y FLAFSASQL+ S W FA
Sbjct: 1196 RAVPSTSTPS---TSRQMTSVYRRVQTALTEGLIMCGRRYSFLAFSASQLKQKSAWFFAE 1252
Query: 498 NDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVE-VTSDG 556
+ + ++ WMG F IR+ +K AARMG F+SS T V +Q E+ D+E VT +G
Sbjct: 1253 DGATTVAGIKEWMGQF-PIRNPAKHAARMGLCFTSSYAT--VTMQPGEVDEDLEDVTRNG 1309
Query: 557 NTYCFSDGIGKISLSFARQVAQKCGLSH--TPSAFQIRYGGYKGVIAV--------DRNS 606
Y FSDGIG I+ A +VA+ L+ PSA+QIRY G+KGV+AV DR +
Sbjct: 1310 --YNFSDGIGVITEDLALEVAEMLPLADRFAPSAYQIRYAGFKGVVAVSPPGPGQEDRGT 1367
Query: 607 FRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLI 666
R++SLR SM KFES + +L V W++ P FLNR+II+LL+TLGV D+ F +Q+ L
Sbjct: 1368 -RRMSLRPSMRKFESTHNVLEVVSWTKFQPAFLNRQIITLLTTLGVPDDSFWQLQEAMLG 1426
Query: 667 LLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLK 726
L ++L + + A +V+ + + + ML G+ P EP+L MLL+ +Q+ L
Sbjct: 1427 KLRRVLSDSDVAYEVVTN-SCPEQGSTAGLMLGAGFAPATEPHLRAMLLAICTSQMQGLL 1485
Query: 727 SRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFF----HRVDDKTSI 782
++ I+VPKGR L+GC DE GIL GQ F+RV+ ++S ++ D +
Sbjct: 1486 NKTWIFVPKGRWLMGCLDEFGILEQGQCFLRVSTPSLGSRCVNRSPIFPSEYKGDANAQV 1545
Query: 783 VKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGD 842
+ G V++ KNPCLHPGDVR+LEAV L VDC +FP+KGERPH +E SG DLDGD
Sbjct: 1546 ITGTVVMAKNPCLHPGDVRILEAVDVPDLYH--LVDCFVFPKKGERPHADEASGSDLDGD 1603
Query: 843 IFFISWDNDLIPC--ETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAH 900
++F++WD L+P ++ PMDY+ +++ + HDV ++ F+++ M+ D LG I AH
Sbjct: 1604 VYFVTWDESLVPPGRKSCTPMDYSPAKTKQLPHDVHQQDTIDFYLESMVYDNLGRICNAH 1663
Query: 901 LVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYI 960
HADR D A KC+ LA L S+AVD AKTG MP AL PKE+PDFM +ED Y
Sbjct: 1664 AAHADRSDDGAMDPKCIELARLASIAVDSAKTGEIVRMPPALSPKEYPDFMGKEDAISYR 1723
Query: 961 SFGVLGKLYRATL---DSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMY 1017
S +LG+LYR+ L D R I E YD DLEV G FL A + +Y
Sbjct: 1724 SEKILGRLYRSVLGENDGDFLSRGACISD----EIRYDADLEVPGASDFLQDAWRCRCLY 1779
Query: 1018 EEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWF 1077
E +NAL++ Y +E E++TG + + A ++ + +K+RI + + E + F
Sbjct: 1780 EARLNALLDQYNVRSEAELVTGEIWSLAGCSKKYQHQ---LKERINYAYSKVHQEFRIIF 1836
Query: 1078 GSSCKENEHPQL-----ASAWYHVTYSPSYCKER-------MALLSFPWIVGDILLNIK 1124
S ++ L ASAWY VTY P + R LSF WI D L IK
Sbjct: 1837 ESIGASTDNKNLAYEMKASAWYQVTYHPEIIRSREPGDEDAPTRLSFAWIAVDYLAQIK 1895
Score = 144 bits (362), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 140/499 (28%), Positives = 218/499 (43%), Gaps = 86/499 (17%)
Query: 162 CC-FKVEILFEDVLETVGFSLDEGATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHI 220
CC K+E V E + F D + ++ +L P +Y + SG V + P + +
Sbjct: 259 CCDVKLEFALAHVAEALAFQAD-----DSLVLRLSAAPLVYYRTSGDDVHGRVP---FQL 310
Query: 221 CKEDFDFFWVRTTDFSVTKSIGCSTSF-------FWEIKNGLLASDISNIFPFYKEDKTD 273
D D W+RTTD + + +IG ++ FW L P + D+
Sbjct: 311 VDADDDP-WIRTTDVTRSGAIGRCLAYRVSFAVQFWPTMRVALECMQRQGVPVHVRDRRC 369
Query: 274 ---LILEEGE--EFCTTSEIVPLVKCRPGFNLSHEVLFQLNSLVHNQKVSLVAADAELIQ 328
+LEE + + P G L VL+ +N L+HN V+ E
Sbjct: 370 RGFTVLEEAGLVQPMRDAFFSPRHDDDAGAGLRFPVLYLVNVLMHNGVVNPHQMTPEFFG 429
Query: 329 ILSGLSMETALMVLQKLHKLK-SICYDPVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVM 387
+L + + L +L K +C +P
Sbjct: 430 LLMRTREDVNVAALTELFGAKLGVCDNP-------------------------------- 457
Query: 388 SCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANAL------ 441
C+R YC+ +E SN V++++ + + F+RVTF +E L NAL
Sbjct: 458 -CWRE-------YCM--PVERSNRVIRHYHELSDRFLRVTFTDEGMLPLNPNALTLRAVP 507
Query: 442 STSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEV 501
STS + T +Y R+ T L +G+++ + Y FLAFSASQL+ S W FA +
Sbjct: 508 STSTPS---TSRQMTSVYRRVQTALTEGLIMCGRRYSFLAFSASQLKQKSAWFFAEDGAT 564
Query: 502 SAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVE-VTSDGNTYC 560
+ ++ WMG F IR+ +K AARMG F+SS T V +Q E+ D+E VT +G Y
Sbjct: 565 TVAGIKEWMGQF-PIRNPAKHAARMGLCFTSSYAT--VTMQPGEVDEDLEDVTRNG--YN 619
Query: 561 FSDGIGKISLSFARQVAQKCGLSH--TPSAFQIRYGGYKGV-IAVDRNSFRKLSLRRSML 617
FSDGIG I+ A +VA+ L+ PSA+QIR ++ +A+ R+ R S
Sbjct: 620 FSDGIGVITEDLALEVAEMLPLADRFAPSAYQIRREVFEETRVAMARSRTRSPE---STR 676
Query: 618 KFESRNRMLNVTKWSESMP 636
+ R R + +K ++ P
Sbjct: 677 RLAHRLRAIKPSKSNQQHP 695
>gi|8248473|gb|AAF74208.1|AF268093_1 RNA-dependent RNA polymerase [Arabidopsis thaliana]
Length = 1196
Score = 534 bits (1376), Expect = e-148, Method: Compositional matrix adjust.
Identities = 373/1137 (32%), Positives = 580/1137 (51%), Gaps = 101/1137 (8%)
Query: 53 VQFTSLDFKSKAQNLSLNDKLVFNSQNLKIS----ETHSDIVPRPVKAQHRVEDGVLHVG 108
V F + +A + + L+ + Q LK+S +S R +++ L +G
Sbjct: 81 VHFAVFESAGRAMDAAGQCNLILDGQPLKVSLGPKNPYSLNQRRRTTVPYKLAGITLEIG 140
Query: 109 VMCKEERLRVLQTFEGVRGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEI 168
+ + V EGV + P +F ++ + +C +K+E+
Sbjct: 141 TLVSRDDFFVSWRAEGVDFLVDPFDNTCKFCFRKSTAFSFKDAVMHA---VINCDYKLEL 197
Query: 169 LFEDVLETVGFSLDEGATVNG--ILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFD 226
L D+ ++ + T++G ++ +L P+++ + + + P D
Sbjct: 198 LVRDIQ-----TVRQYKTLHGFVLILQLASSPRVWYRTADDDIYDTVPGDLLDDDDP--- 249
Query: 227 FFWVRTTDFSVTKSIGCSTSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTTS 286
W+RTTDF+ +IG S+ +L S P Y E+K L+
Sbjct: 250 --WIRTTDFTQVGAIGRCHSY------RVLIS------PRY-ENKLRTALDYFRMRRVQE 294
Query: 287 EIV---PLVKCRPGFN---------------LSHEVLFQLNSLVHNQKVSLVAADAELIQ 328
E V P ++ P F +S E++F +NS++H +
Sbjct: 295 ERVRWPPRIRNEPCFGEPVSDHFFCIHHKEGISFEIMFLVNSVLHRGVFNQFQLTERFFD 354
Query: 329 ILSGLSMETALMVLQKLHKLKSICYDPVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMS 388
+L + + L+ L K +D +K + +N K L SH++ ++
Sbjct: 355 LLRNQPKDVNIASLKHLCTYKRPVFDAYKRLKLVQEWIQKNPKL--LGSHEQ--SEDISE 410
Query: 389 CYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALS---TSI 445
R ++TP + YCL PE+E SN V++ + A F+RVTF++E + +N LS I
Sbjct: 411 IRRLVITPTRAYCLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAPI 470
Query: 446 QRGIFSKPY--RTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSA 503
+ + S + +T ++ R+ +IL DG + + Y FLAFSA+QLR+ S W FA + +
Sbjct: 471 VKDLTSSSFSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTRV 530
Query: 504 EDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEM-IPDVEVTSDGNTYCFS 562
D++ WMG F K ++V+KCAARMG FSS+ T+ V +V+ +PD+E N Y FS
Sbjct: 531 SDIKTWMGKF-KDKNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPDIE----RNGYVFS 585
Query: 563 DGIGKISLSFARQVAQKCGLS--HTPSAFQIRYGGYKGVIA--VDRNSFRKLSLRRSMLK 618
DGIG I+ A +V +K L ++P A+QIRY G+KGV+A ++ +L+LR SM K
Sbjct: 586 DGIGTITPDLAGEVMEKLKLDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDSMKK 645
Query: 619 FESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAA 678
S++ +L + W+ P FLNR+II+LLS LGV E+F MQ+ L L ++L++ + A
Sbjct: 646 IFSKHTILEICSWTRFQPGFLNRQIITLLSVLGVPVEIFWDMQESMLYKLDRILVDTDVA 705
Query: 679 LDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRL 738
+VL + + N ML G++P EP+L ML S QL L+ + RI+V GR
Sbjct: 706 FEVLTA-SCAEQGNTAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRW 764
Query: 739 LIGCFDETGILNYGQVFVRVTMTR-EELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHP 797
L+GC DE GIL +GQ F++V+ E SK S F +VKG V + KNPCLHP
Sbjct: 765 LMGCLDEAGILEHGQCFIQVSKPSIENCFSKHGSRFKETKKDLEVVKGYVAIAKNPCLHP 824
Query: 798 GDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPC-- 855
GDVR+LEAV +L DC+IFPQKG+RPH NE SG DLDGD++F++WD LIP
Sbjct: 825 GDVRILEAVDVPQLHH--MYDCLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKLIPPNR 882
Query: 856 ETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSK 915
++ P M Y + + V ++I FF + N+ LG I AH+VHADR A +
Sbjct: 883 KSYPAMHYDAAEEKSLGRAVNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYGAMDEE 942
Query: 916 CLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDS 975
CL LA L + AVDF KTG MP LKPK +PDFM +ED Y S +LG+LYR +
Sbjct: 943 CLLLAELAATAVDFPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRPVKEV 1002
Query: 976 IMQ-IRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTED 1034
+ +++ S + YD LE+ GFE + A HK Y+ ++ L+ Y E+
Sbjct: 1003 YDEDAEASSEESTDPSAIPYDAVLEIPGFEDLIPEAWGHKCSYDGQLIGLLGQYKVQKEE 1062
Query: 1035 EILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSCKENE--------- 1085
EI+TG++ + Y +++ G++K+R+ S +L+ E ++ F + ++E
Sbjct: 1063 EIVTGHIWSMPKYT---SKKQGELKERLKHSYNSLKKEFRKVFEETIPDHENLSEEEKNI 1119
Query: 1086 -HPQLASAWYHVTYSPSYCKERM-----------ALLSFPWIVGDILLNIKSVNSRK 1130
+ + ASAWYHVTY P + K+ + A+LSF WI D L IK + SR+
Sbjct: 1120 LYEKKASAWYHVTYHPEWVKKSLELQDPDESSHAAMLSFAWIAADYLARIK-IRSRE 1175
>gi|413954935|gb|AFW87584.1| hypothetical protein ZEAMMB73_985632 [Zea mays]
Length = 1241
Score = 533 bits (1374), Expect = e-148, Method: Compositional matrix adjust.
Identities = 364/1020 (35%), Positives = 533/1020 (52%), Gaps = 87/1020 (8%)
Query: 162 CC-FKVEILFEDVLETVGFSLDEGATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHI 220
CC K+E V E + F D + ++ +L P +Y + SG V + P + +
Sbjct: 246 CCDVKLEFALAHVTEALAFQAD-----DSLVLRLSAAPLVYYRTSGDDVHGRVP---FQL 297
Query: 221 CKEDFDFFWVRTTDFSVTKSIGCSTSF-------FWEIKNGLLASDISNIFPFYKEDKTD 273
D D W+RTTD + + +IG ++ FW L P + D+
Sbjct: 298 VDADDDP-WIRTTDVTQSGAIGRCLAYRVSFAVQFWPTMRVALECMQRQGVPVHVRDRRC 356
Query: 274 ---LILEEGE--EFCTTSEIVPLVKCRPGFNLSHEVLFQLNSLVHNQKVSLVAADAELIQ 328
+LEE + + P + L L+ +N L+HN V+ E
Sbjct: 357 RGFTVLEEAGLVQPMRDAFFSPRHEHDDDAGLRFPELYLVNVLMHNGVVNPHQMTPEFFG 416
Query: 329 ILSGLSMETALMVLQKLHKLK-SICYDPVSFVKTQLHVLGRN----CKSIPLSSHKRLID 383
+L + + L +L K +C +P +K +N C+S S ++ D
Sbjct: 417 LLMRTREDVNVAALTELFGAKLGVCDNPCWRLKNAQDRAAKNLDLVCRSSSSSRRRKASD 476
Query: 384 HNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANAL-- 441
+ R +VTP + YC+ P++E SN V++++ + + F+RVTF +E L NAL
Sbjct: 477 CDA-EVRRLIVTPTREYCIPPQVERSNRVIRHYHELSDRFLRVTFTDEGMLPLNPNALTL 535
Query: 442 ----STSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFAS 497
STS + T +Y R+ T L +G+++ + Y FLAFSASQL+ S W FA
Sbjct: 536 RAVPSTSTPS---TSRQMTSVYRRVQTALTEGLIMCGRRYSFLAFSASQLKQKSAWFFAE 592
Query: 498 NDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVE-VTSDG 556
+ + ++ WMG F IR+ +K AARMG F+SS T V +Q E+ D+E VT +G
Sbjct: 593 DGATTVAGIKEWMGQF-PIRNPAKHAARMGLCFTSSYAT--VTMQPGEVDEDLEDVTRNG 649
Query: 557 NTYCFSDGIGKISLSFARQVAQKCGLSH--TPSAFQIRYGGYKGVIAV--------DRNS 606
Y FSDGIG I+ A +VA+ L+ PSA+QIRY G+KGV+AV DR +
Sbjct: 650 --YNFSDGIGVITEDLALEVAEMLPLADRFAPSAYQIRYAGFKGVVAVWPPGPGQEDRGT 707
Query: 607 FRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLI 666
R++SLR SM KFES + +L V W++ P FLNR+II+LL+TLGV D+ F +Q+ L
Sbjct: 708 -RRMSLRPSMRKFESTHTVLEVVSWTKFQPAFLNRQIITLLTTLGVPDDAFWQLQEAMLG 766
Query: 667 LLGKMLINREAALDVLQKLNGVDSKNILVKMLL-QGYEPNVEPYLSMMLLSHHENQLSDL 725
L ++L + + A +V+ +N + ++L G+ P EP+L MLL+ +Q+ L
Sbjct: 767 KLRRVLSDSDVAYEVV--INSCPEQGSTAGLMLGAGFAPATEPHLRAMLLAICTSQMQGL 824
Query: 726 KSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFF----HRVDDKTS 781
++ I+VPKGR L+GC DE GIL GQ F+RV+ ++S ++ D
Sbjct: 825 LNKTWIFVPKGRWLMGCLDEFGILEQGQCFLRVSTPSVGSRCVNRSPIFPSEYKGDADAQ 884
Query: 782 IVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDG 841
++ G V++ KNPCLHPGDVR+LEAV L VDC +FP+KGERPH +E SG DLDG
Sbjct: 885 VITGTVVMAKNPCLHPGDVRILEAVDVPDLYH--LVDCFVFPKKGERPHADEASGSDLDG 942
Query: 842 DIFFISWDNDLIPC--ETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTA 899
D++F++WD L+P ++ PMDY+ +++ + DV ++ F+++ M+ D LG I A
Sbjct: 943 DVYFVTWDESLVPPGRKSCTPMDYSPAKTKQLPRDVHQQDTIDFYLESMVYDNLGRICNA 1002
Query: 900 HLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRY 959
H HADR D A KC+ LA L S+AVD AKTG MP AL PKE+PDFM +ED Y
Sbjct: 1003 HAAHADRSDDGAMDPKCIELARLASIAVDSAKTGEIVRMPPALSPKEYPDFMGKEDAISY 1062
Query: 960 ISFGVLGKLYRATL---DSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEM 1016
S +LG+LYR+ L D R I E YD DLEV G FL A + +
Sbjct: 1063 RSEKILGRLYRSVLGENDGDFLSRDACISD----EIRYDADLEVLGASDFLQDAWRCRCL 1118
Query: 1017 YEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEW 1076
YE +NAL++ Y +E E++TG + + A + + +K+RI + NL E +
Sbjct: 1119 YEARLNALLDQYDVCSEAELVTGEIWSLAGC---SKKYHHQLKERINYAYSNLHQEFRSI 1175
Query: 1077 FGSSCKENEHPQL-----ASAWYHVTYSPSYCKER-------MALLSFPWIVGDILLNIK 1124
F S ++ L ASAWY VTY P + R LSF WI D L IK
Sbjct: 1176 FESIDASTDNKNLAYEMKASAWYQVTYHPEIIRSREPGDEDAPTRLSFAWIAVDYLAQIK 1235
>gi|397529811|gb|AFO53516.1| RNA-dependent RNA polymerase 6 [Solanum lycopersicum]
Length = 1197
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 355/1010 (35%), Positives = 536/1010 (53%), Gaps = 77/1010 (7%)
Query: 162 CCFKVEILFEDVLETVGFSLDEGATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHIC 221
C FK+E L ++ E + D + V +L +L P ++ + + + D
Sbjct: 192 CNFKIEFLLREINE-INECKDFSSLV--LLLQLASSPLVFYRTADDDIEESVAFDLL--- 245
Query: 222 KEDFDFFWVRTTDFSVTKSIGCSTSFFWEIK--NGLLASDISNIFPFYKEDKTDLILEEG 279
D D W+RTTD + + +IG ++ I+ NG N +++E + ++ E+G
Sbjct: 246 --DDDDQWIRTTDITFSGAIGRFNTYRVSIRPRNGPSFKKAMN---YFRESRVPVV-EQG 299
Query: 280 EEFC----------TTSEIVPLVKCRPGFNLSHEVLFQLNSLVHNQKVSLVAADAELIQI 329
E+ + SE P + +S +VLF +N+++H V+ AE +
Sbjct: 300 EQMLRVRNEPDFGESVSE--PFFCFQNHEGISFKVLFLVNAVLHKGIVNQHQMTAEFFSL 357
Query: 330 LSGLSMETALMVLQKLHKLKSICYDPVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSC 389
L L L+ + K D + + + L N + + +D +V+
Sbjct: 358 LRKHQEGVNLAALKHIFSYKRPVNDAIRKLASVQKWLFNNPNLLERTGQ---LD-DVVEV 413
Query: 390 YRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALS---TSIQ 446
R ++TP K YCL P +E SN V++ + + F+RVTF++E L NAL+ +I
Sbjct: 414 RRLVITPTKAYCLPPTVELSNRVLRKYKHISDRFLRVTFMDEGMRNLNRNALTYYAANIV 473
Query: 447 RGIFS--KPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAE 504
R I S P RT I+ R+ I+ G + + Y FLAFSA+QLR+ S W FA E+
Sbjct: 474 REITSSSNPQRTGIFQRVKIIVNKGFYLCGRRYSFLAFSANQLRDRSAWFFAETPEIRVT 533
Query: 505 DVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTL-VVPVQDVEMIPDVEVTSDGNTYCFSD 563
+ WMG F R+V+KCAARMGQ FSS+ T+ V+P + +PD+E N Y FSD
Sbjct: 534 SIINWMGKFGN-RNVAKCAARMGQCFSSTYATVEVLPSEVNSELPDIE----RNGYVFSD 588
Query: 564 GIGKISLSFARQVAQKCGLS-HTPSAFQIRYGGYKGVIA---VDRNSFRKLSLRRSMLKF 619
GIG ++ + +VA K LS + P A+QIRY G KGV+A +++ R LSLR SM KF
Sbjct: 589 GIGMMTADLSIEVAAKLQLSVNPPCAYQIRYAGCKGVVACWPAEKDGIR-LSLRPSMKKF 647
Query: 620 ESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAAL 679
+S + +L + W+ P FLNR+II+LLS+L VKDE+F MQ++ L L K+L++ + A
Sbjct: 648 DSNHTILEICSWTRLQPGFLNRQIITLLSSLEVKDEMFWEMQKEMLSKLDKILVDSDVAF 707
Query: 680 DVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLL 739
DV+ + ++ N ML G++P EP+L ML S QL DL+++ R++V GR L
Sbjct: 708 DVITA-SCAEAGNTAAIMLSAGFKPQSEPHLRGMLASIRAAQLGDLRNKTRMFVTSGRWL 766
Query: 740 IGCFDETGILNYGQVFVRVTM-TREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPG 798
+GC DE G L GQ F++V+ + E K F + +VKG V++ KNPCLHPG
Sbjct: 767 MGCLDELGELEQGQCFIQVSSPSLETCFVKHGPEFSEIKKNLQVVKGLVVIAKNPCLHPG 826
Query: 799 DVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETE 858
DVR+LEAV L DC++FPQKG+RPH NE SG DLDGD++F++WD +LIP +
Sbjct: 827 DVRILEAVDVPGLHH--LYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKK 884
Query: 859 P--PMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKC 916
PM Y ++ + V +I FF+ M+ ++LG I AH+VHAD A KC
Sbjct: 885 SWMPMAYAPAEAKQLGRQVQHTDIIDFFLKNMVQESLGEICNAHVVHADLSEFGAMDEKC 944
Query: 917 LHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSI 976
L LA L ++AVDF KTG MP LKPK +PDFM +E Y S +LGKLYR +D
Sbjct: 945 LKLAELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEPFQSYESKKILGKLYRQVIDVY 1004
Query: 977 MQIRSNAIWSEKIA-EASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDE 1035
+ E + + YD +LE+ G+E F+ A +HK Y+ ++N L+ Y + E+E
Sbjct: 1005 DAEGGESSGLEYVPKDIPYDTNLEIPGYEDFIDDAWNHKCSYDGQLNGLLGQYKVNGEEE 1064
Query: 1036 ILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGS----------SCKENE 1085
++TG++ + Y ++ G++K+R+ + L+ E + F K +
Sbjct: 1065 VVTGHIWSMPKY---SAKKQGELKERLKHAYNMLRKEFRNVFEQMEPDFDLLPIDEKNDM 1121
Query: 1086 HPQLASAWYHVTYSPSYCKERMAL-----------LSFPWIVGDILLNIK 1124
+ + A AWY VTY P + + L LSF WI D + IK
Sbjct: 1122 YERKAFAWYRVTYHPHWVTRSLELQLPDAVSNGVMLSFAWIAADYIARIK 1171
>gi|326522592|dbj|BAK07758.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 597
Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust.
Identities = 274/600 (45%), Positives = 393/600 (65%), Gaps = 41/600 (6%)
Query: 543 DVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSH-TPSAFQIRYGGYKGVIA 601
+V+ +P+V ++G Y FSDGIG IS FA +V++KC L+ TPSAFQIRYGGYKGV+A
Sbjct: 6 EVQALPEV---TNGTKYVFSDGIGTISADFADEVSRKCKLARFTPSAFQIRYGGYKGVVA 62
Query: 602 VDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQ 661
+D S KLSLR SM KF S N L+V +S+ PCFLNR++I+LLSTLGV+D +FE Q
Sbjct: 63 IDPRSHWKLSLRSSMSKFPSENITLDVLAYSKYQPCFLNRQLITLLSTLGVRDNIFELKQ 122
Query: 662 QQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQ 721
Q ++ L +++ +AA+D ++ + + N++ ++LL GY+P+VEPYLSM+L + ++
Sbjct: 123 QAAVMQLNRLVTEPQAAIDAIELMPMGEITNVVKELLLCGYQPDVEPYLSMILQTFRASK 182
Query: 722 LSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTS 781
L +LK++ RI++P+GR ++GC DET L YG+VF++ + + E DK
Sbjct: 183 LLELKTKSRIFIPEGRAMMGCLDETRTLKYGEVFIQASNSANE------------SDKF- 229
Query: 782 IVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDG 841
+V GKV+V KNPCLHPGD+R+L+AVY L+ V+C++FPQ+G RPHPNECSG DLDG
Sbjct: 230 VVTGKVVVAKNPCLHPGDIRILKAVYTPVLDH--MVNCVVFPQQGPRPHPNECSGSDLDG 287
Query: 842 DIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHL 901
DI+F+SWD DLIP PMDYT + +DHDV +EE+H++F +Y++N++LG I+ AH+
Sbjct: 288 DIYFVSWDPDLIPTRMVAPMDYTPAPTETLDHDVVIEEVHEYFANYIVNESLGIIANAHV 347
Query: 902 VHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYIS 961
V AD++ KA S++C+ LA L S+AVD+ KTG PA++P L +E+PDFME+ D+ YIS
Sbjct: 348 VFADKESLKAESTQCIKLAELFSIAVDYPKTGVPAQIPSELHVREYPDFMEKLDRATYIS 407
Query: 962 FGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEM 1021
GV+GKLYR I +++ +A SYD DL VDG++ ++ A K Y+ ++
Sbjct: 408 KGVIGKLYREIKKQSPHI---GHFTKDVARRSYDTDLIVDGYQDYITEAVWFKGEYDFKL 464
Query: 1022 NALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSC 1081
LM +YG +E EI++G + A + + D I L+ K+L+ EA+ WF S
Sbjct: 465 GNLMEHYGIKSEAEIISGCILKMAKNFTKSSD-----ADAIRLAVKSLRKEARSWF-SDM 518
Query: 1082 KENEHPQL-------ASAWYHVTYSPSY------CKERMALLSFPWIVGDILLNIKSVNS 1128
+E + ASAWYHVTY P Y ER L+SFPW V D LL+IK S
Sbjct: 519 SADESGDVHEASYAKASAWYHVTYHPEYYGCYNKIYERPHLISFPWCVYDKLLHIKQRKS 578
>gi|4375829|emb|CAA09894.1| RNA-directed RNA polymerase [Arabidopsis thaliana]
Length = 513
Score = 526 bits (1354), Expect = e-146, Method: Compositional matrix adjust.
Identities = 263/528 (49%), Positives = 357/528 (67%), Gaps = 16/528 (3%)
Query: 506 VRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGI 565
+R WMG F+ IR+V+K AAR+GQ FSSS++TL V ++E+IPDVE+ S G Y FSDGI
Sbjct: 1 IRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTRYVFSDGI 60
Query: 566 GKISLSFARQVAQKCGLSH-TPSAFQIRYGGYKGVIAVDRNSFRKLSLRRSMLKFESRNR 624
GKIS FAR+VA+KCGL+ +PSAFQIRYGGYKGV+AVD NS +KLSLR+SM KFES N
Sbjct: 61 GKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSKFESENT 120
Query: 625 MLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQK 684
L+V WS+ PC++NR++I+LLSTLGV D VFE Q++ + L +L + A + L
Sbjct: 121 KLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLEAHEALGL 180
Query: 685 LNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFD 744
+ ++ NIL ++L GY+P+ EP+LSMML + ++L +L+++ RI++ GR ++GC D
Sbjct: 181 MAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMMGCLD 240
Query: 745 ETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLE 804
ET L YGQV V+ + + I+ G V+V KNPCLH GDVRVL+
Sbjct: 241 ETRTLEYGQVVVQYSDPMRP-------------GRRFIITGPVVVAKNPCLHSGDVRVLQ 287
Query: 805 AVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYT 864
AV L VDC++FPQKG RPHPNECSG DLDGDI+F+ WD +L+P T PMDYT
Sbjct: 288 AVNVPALNH--MVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEPMDYT 345
Query: 865 GRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHS 924
++I+DHDVT+EE+ ++F +Y++ND+LG I+ AH AD++P KA S C+ LA S
Sbjct: 346 PEPTQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAKKFS 405
Query: 925 MAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAI 984
AVDF KTG A +P L KE+PDFME+ DKP Y S V+GKL+R + + S
Sbjct: 406 TAVDFPKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKS 465
Query: 985 WSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGAST 1032
++ +A SYD D+EVDGFE ++ A K Y+ ++ LM+YYG T
Sbjct: 466 FTLDVASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKT 513
>gi|105990552|gb|ABF81698.1| RNA-dependent RNA polymerase [Zea mays]
Length = 459
Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust.
Identities = 260/464 (56%), Positives = 328/464 (70%), Gaps = 7/464 (1%)
Query: 217 RYHICKEDFDFFWVRTTDFSVTKSIGCSTSFFWEIKNGLLASDISNIFPFYKEDKTDLIL 276
R+H CKED F WVR DF+ S G ++ ++ G S I PF E +L +
Sbjct: 1 RFHACKEDAKFAWVRALDFTPNSSFGECSTLVLKLSKGASVSYILESLPFSGE-LGELAI 59
Query: 277 EEGEEFCTTSEIVPLVKCRPGFNLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSME 336
+ F ++S +VPLV C GF++ +EVLF+LNSLVH K+ +A+L ++L LS++
Sbjct: 60 ASMDVFGSSSNVVPLVDCPNGFSVPYEVLFRLNSLVHMGKLVARHVNADLFKVLEDLSID 119
Query: 337 TALMVLQKLHKLKSICYDPVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTP 396
T + +K+ KLKS CY+P+ F++ + H + K++ S+KR +M CYR +TP
Sbjct: 120 TLRRIFEKMSKLKSTCYEPLQFIRHEAHSMNMRKKAL---SNKRE-SGKLMRCYRIHITP 175
Query: 397 MKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRT 456
KIYCLGPE E SNYVVK ++YASDF RVTFV+EDWSKL NALS ++G FSKP +T
Sbjct: 176 SKIYCLGPEEEVSNYVVKYHSEYASDFARVTFVDEDWSKLSPNALSARTEQGFFSKPLKT 235
Query: 457 KIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKI 516
+Y RIL+IL++G IG K YEFLAFSASQLR NSVWMFASN ++AE++R WMG F I
Sbjct: 236 GLYHRILSILKEGFCIGPKKYEFLAFSASQLRGNSVWMFASNSSLTAENIRRWMGHFEDI 295
Query: 517 RSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQV 576
RSVSKCAARMGQLFSSS+QT V DVE+IPD+EVT+DG Y FSDGIGKIS FARQV
Sbjct: 296 RSVSKCAARMGQLFSSSRQTFEVSSYDVEVIPDIEVTTDGTKYIFSDGIGKISTRFARQV 355
Query: 577 AQKCGL--SHTPSAFQIRYGGYKGVIAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSES 634
A+ GL +H PSAFQIRYGGYKGVI +D SF LSLR SM KFES++ MLN+T WS+S
Sbjct: 356 AKLIGLDPAHPPSAFQIRYGGYKGVITIDPTSFFNLSLRPSMKKFESKSTMLNITNWSKS 415
Query: 635 MPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAA 678
PC++NREIISLLSTLG+KDE FE+MQQ + ML N+EAA
Sbjct: 416 QPCYVNREIISLLSTLGIKDEAFESMQQDDMHESDGMLTNKEAA 459
>gi|113205403|gb|ABI34378.1| RNA-directed RNA polymerase, putative [Solanum tuberosum]
Length = 1050
Score = 503 bits (1295), Expect = e-139, Method: Compositional matrix adjust.
Identities = 280/633 (44%), Positives = 400/633 (63%), Gaps = 24/633 (3%)
Query: 206 GPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKSIGCSTSFFWEIKNGLLASDISNIFP 265
P + + + Y KE D WVRTTDF+ + IG S+S + + G+ + F
Sbjct: 21 APRIYKRLENSCYSFFKETPDDQWVRTTDFAPS-WIGLSSSLCLQFRRGVHLPNFQESFF 79
Query: 266 FYKEDKTDLILEEGEEFCTT--SEIVPLVKCRPGFNLSHEVLFQLNSLVHNQKVSLVAAD 323
Y E + ++ L+ G F + S +VP V+ G + +++LF+++SLV + + + +
Sbjct: 80 HYAERENNITLQTGFTFFISQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPSLN 139
Query: 324 AELIQILSGLSMETALM--VLQKLHKLKSICYDPVSFVKTQL--HVLGRNCKSIPLSSHK 379
+++ A + L+KL+ LK CYDPV ++ Q ++ GR P S
Sbjct: 140 VYFFRLVDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQ----PPKSPS 195
Query: 380 RLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPAN 439
+D ++ R LVTP K+Y GPE+ SN V++N+++ +F+RV+FV+E+W KL +
Sbjct: 196 ITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYST 255
Query: 440 AL--STSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFAS 497
L S GI RT IY RIL+ L+ G VIGDK +EFLAFS+SQLR+NSVWMFAS
Sbjct: 256 ELLPKASTGNGI-----RTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFAS 310
Query: 498 NDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGN 557
++A D+R WMG F++I++V+K AAR+GQ F SS +TL V ++E+IPDV+V G
Sbjct: 311 RPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSTETLSVLRHEIEVIPDVKV--HGT 368
Query: 558 TYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSFRKLSLRRSML 617
+Y FSDGIGKIS FAR+VA KCGL +TPSAFQIRYGGYKGV+AVD S KLSLR+SM
Sbjct: 369 SYVFSDGIGKISADFARRVASKCGLQYTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMS 428
Query: 618 KFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREA 677
K+ES N L+V WS+ PCFLNR++I+LLSTLGVKD++ E Q++ + L +L +
Sbjct: 429 KYESDNNKLDVLGWSKYQPCFLNRQLITLLSTLGVKDDILEQKQKEAVDQLDAILHDSLK 488
Query: 678 ALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGR 737
A + L+ ++ ++ NIL ML GY P+ EP+LSMML + ++L DL+++ RI++P GR
Sbjct: 489 AQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPNGR 548
Query: 738 LLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFH--RVDDKTSIVKGKVLVTKNPCL 795
++GC DE+ L YGQVFV+ T S+D F+ R + I+KG V+V KNPCL
Sbjct: 549 AMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCL 608
Query: 796 HPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGER 828
HPGD+RVL AV L VDC++FPQKG+R
Sbjct: 609 HPGDIRVLRAVNVPALHH--MVDCVVFPQKGKR 639
Score = 267 bits (682), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 144/333 (43%), Positives = 192/333 (57%), Gaps = 37/333 (11%)
Query: 829 PHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLE---------- 878
PHPNECSG DLDGDI+F+ WD D+IP PM+Y S +DHDVT+E
Sbjct: 702 PHPNECSGSDLDGDIYFVCWDPDMIPPRQVQPMEYPPAPSIQLDHDVTIERGDWPVCATT 761
Query: 879 ---------------EIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLH 923
E+ ++F +Y++ND+LG IS AH+V ADR+PD A S C LA L
Sbjct: 762 VQVLRNSFSPVCLLQEVEEYFTNYIVNDSLGIISNAHVVFADREPDMAMSDPCKKLAELC 821
Query: 924 SMAVDFAKTGAPAEMPLALKPKEFPDFMER-EDKPRYISFGVLGKLYRATLDSIMQIRSN 982
S+AVDF KTG PAE+P L+PKE+PDFM++ DK YIS V+GKL+R D Q S
Sbjct: 822 SIAVDFPKTGVPAEIPSQLRPKEYPDFMDKPPDKTTYISERVIGKLFRKVKDKAPQASST 881
Query: 983 AIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLR 1042
AI++ +A SYD DLEVDGFE ++ A +K Y+ ++ LM YYG TE EIL+G +
Sbjct: 882 AIFTRDVARRSYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMEYYGIKTEAEILSGGIM 941
Query: 1043 NRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSCKENEHPQLASAWYHVTYSPSY 1102
+ R + I ++ + L+ EA+ WF ++ ASAWYHVTY P+Y
Sbjct: 942 KTSKTFDRRKD-----AEAISIAVRALRKEARTWFKRRNDIDDMLPKASAWYHVTYHPTY 996
Query: 1103 --CK----ERMALLSFPWIVGDILLNIKSVNSR 1129
C +R +SFPW V D L+ IK +R
Sbjct: 997 WGCYNQGLKRDHFISFPWCVYDQLIQIKKEKAR 1029
>gi|222618586|gb|EEE54718.1| hypothetical protein OsJ_02054 [Oryza sativa Japonica Group]
Length = 1571
Score = 484 bits (1247), Expect = e-133, Method: Compositional matrix adjust.
Identities = 317/861 (36%), Positives = 453/861 (52%), Gaps = 89/861 (10%)
Query: 299 NLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSF 358
L +LF +N+LVH ++ E +L + L+ K +D
Sbjct: 739 GLKFPLLFMVNALVHKGIINQHQLTPEFFSLLGRSEENVNVAALRDFWGDKFPVFDACGR 798
Query: 359 VKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAK 418
+K L+ + RN K L K DH R ++TP + YCL PE+E SN V++++ +
Sbjct: 799 LKKALNRVARNPK---LLCSKVGDDH--AEVRRLVITPTRAYCLPPEVERSNRVLRHYHE 853
Query: 419 YASDFMRVTFVEEDWSKLPANALST---SIQRGIFSKPY--RTKIYSRILTILQDGIVIG 473
A F+RVTF++E L N L++ I + + S + +T +Y R+ +L +G +
Sbjct: 854 VADRFLRVTFMDEGMQVLNNNVLNSFTAPIVKDLMSNFFQQKTTVYKRVRMLLTEGFHMC 913
Query: 474 DKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSS 533
+ Y FLAFS++QLR+ S W FA + + + E +R WMG F ++V+K AARMGQ FSS+
Sbjct: 914 GRKYSFLAFSSNQLRDKSAWFFAEDRKTTVEAIRKWMGRFTS-KNVAKHAARMGQCFSST 972
Query: 534 KQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLS-HTPSAFQIR 592
T+ + +V+ D V N Y FSDGIGKI+ A +VA++ L+ + PSA+QIR
Sbjct: 973 YATVTMRPDEVDESFDDVVH---NEYIFSDGIGKITPDLALEVAERLQLTDNPPSAYQIR 1029
Query: 593 YGGYKGVIAV--DRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTL 650
+ G+KGVIAV +L LR SM KFES + +L V W++ P FLNR+II LLS+L
Sbjct: 1030 FAGFKGVIAVWQGHGDGTRLFLRPSMRKFESNHLVLEVVSWTKFQPGFLNRQIIILLSSL 1089
Query: 651 GVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYL 710
V D +F MQ+ L L +L +R+ A +VL + D N ML G+EP EP+L
Sbjct: 1090 NVPDSIFWQMQETMLSNLNNILSDRDVAFEVLTT-SCADDGNTAALMLSAGFEPRTEPHL 1148
Query: 711 SMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTM-TREELESKD 769
MLL+ QL DL + RI+VPKGR L+GC DE G+L GQ F+R T+ + K
Sbjct: 1149 KAMLLAIRSAQLQDLLEKARIFVPKGRWLMGCLDELGVLEQGQCFIRATVPSLNSYFVKH 1208
Query: 770 QSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERP 829
S F D T ++ G V KGERP
Sbjct: 1209 GSRFSSTDKNTEVILGTV-------------------------------------KGERP 1231
Query: 830 HPNECSGGDLDGDIFFISWDNDLIPCETEP--PMDYTGRRSRIMDHDVTLEEIHKFFVDY 887
H NE SG DLDGD++F++WD LIP + PMDY+ ++ + V+ +I FF+
Sbjct: 1232 HANEASGSDLDGDLYFVTWDEKLIPPGKKSWNPMDYSPPEAKQLPRQVSQHDIIDFFLKN 1291
Query: 888 MINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEF 947
MI++ LG I AH+VHAD A KC+HLA L + AVDF KTG A MP LKPK +
Sbjct: 1292 MISENLGRICNAHVVHADLSEYGAMDEKCIHLAELAATAVDFPKTGKLAIMPPHLKPKVY 1351
Query: 948 PDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIA---EASYDHDLEVDGFE 1004
PDFM +ED Y S +LG+LYR SI + + + S+++ + YD DLEV G
Sbjct: 1352 PDFMGKEDGQSYKSEKILGRLYR----SIQEASNGDVVSQEVCTPNDLPYDIDLEVPGAS 1407
Query: 1005 AFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILL 1064
FL A K Y+ +++AL++ Y TE E++TG++ ++ +++ GD+KDR+
Sbjct: 1408 DFLASAWQCKCSYDAQLSALLSQYRVRTEAELVTGHI---TFLVKNSSKKQGDIKDRLKT 1464
Query: 1065 SAKNLQNEAKEWF----------GSSCKENEHPQLASAWYHVTYSPSYC----------- 1103
+ L+ E K F G K + ASAWY VTY P +
Sbjct: 1465 AYSALRKEFKSTFESIASDQCEIGDDEKNLLYEMKASAWYQVTYHPKWVEKSRGILGPDG 1524
Query: 1104 KERMALLSFPWIVGDILLNIK 1124
+E A LSF WI D L IK
Sbjct: 1525 EEIPASLSFAWIPVDYLARIK 1545
Score = 98.6 bits (244), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 106/210 (50%), Gaps = 10/210 (4%)
Query: 299 NLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSF 358
L +LF +N+LVH ++ E +L + L+ K +D
Sbjct: 306 GLKFPLLFMVNALVHKGIINQHQLTPEFFSLLGRSEENVNVAALRDFWGDKFPVFDACGR 365
Query: 359 VKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAK 418
+K L+ + RN K L K DH R ++TP + YCL PE+E SN V++++ +
Sbjct: 366 LKKALNRVARNPK---LLCSKVGDDH--AEVRRLVITPTRAYCLPPEVERSNRVLRHYHE 420
Query: 419 YASDFMRVTFVEEDWSKLPANALST---SIQRGIFSKPY--RTKIYSRILTILQDGIVIG 473
A F+RVTF++E L N L++ I + + S + +T +Y R+ +L +G +
Sbjct: 421 VADRFLRVTFMDEGMQVLNNNVLNSFTAPIVKDLMSNFFQQKTTVYKRVRMLLTEGFHMC 480
Query: 474 DKHYEFLAFSASQLRNNSVWMFASNDEVSA 503
+ Y FLAFS++QLR+ S W FA + + +A
Sbjct: 481 GRKYSFLAFSSNQLRDKSAWFFAEDRKTTA 510
>gi|260803900|ref|XP_002596827.1| hypothetical protein BRAFLDRAFT_99723 [Branchiostoma floridae]
gi|229282087|gb|EEN52839.1| hypothetical protein BRAFLDRAFT_99723 [Branchiostoma floridae]
Length = 1922
Score = 483 bits (1244), Expect = e-133, Method: Compositional matrix adjust.
Identities = 291/770 (37%), Positives = 437/770 (56%), Gaps = 65/770 (8%)
Query: 381 LIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANA 440
L DH V + + +VTP ++ L PE N VV+ + +F+RV F +ED++KL A
Sbjct: 401 LPDHYVYA-RKVVVTPTQMLFLKPEPIVENRVVREYG--VDNFIRVAFRDEDFNKLTA-- 455
Query: 441 LSTSIQRGIFSKPYRTK-IYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASND 499
P K + +R+ +LQ GI IG +H+E+L S SQ+R + WM+A+ D
Sbjct: 456 ----------PNPNSIKCVTTRVKDVLQRGIRIGGRHFEYLGSSNSQMREHGCWMYAAED 505
Query: 500 EVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTY 559
E + D+R WMG + R V+ +R+GQ FSSS+ + V V+D + +VTS Y
Sbjct: 506 ETTTSDIRAWMGDLSHERCVATYVSRLGQFFSSSRDAVNVSVEDRSVALIDDVTSSQRRY 565
Query: 560 CFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSFRK--LSLRRSML 617
FSDGIGKIS+ A +VA G+S PSAFQIRYGG KGV+A D + + +R SM
Sbjct: 566 TFSDGIGKISVPLAEKVAAALGVSPVPSAFQIRYGGCKGVLAQDPSLGHTDLIHIRGSMK 625
Query: 618 KFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREA 677
KFES ++ L VT + LNR+ I+LLS LGV DE F +Q++ L L +ML+ A
Sbjct: 626 KFESEHKTLEVTSVTTPGSLSLNRQAITLLSGLGVPDEEFFKLQERVLNQLAEMLLLDGA 685
Query: 678 ALDVLQKLN-GVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVP-- 734
A+ L G++ + + + EP+ MLL+ + NQ+ +L R RI +P
Sbjct: 686 AVKALSGARVGINFQALHNSRI----SLTTEPFFRSMLLAVYRNQMGELLRRTRIQLPAG 741
Query: 735 KGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPC 794
+GR+++G DETG L YGQVF++ +RE + + H +G+V VTKNPC
Sbjct: 742 EGRIMMGTMDETGKLQYGQVFLQ--YSRETDRPQAEKIVH---------QGQVTVTKNPC 790
Query: 795 LHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI- 853
HPGD+R AV +L + VDCI+FP +G RPHP+E SG DLDGD++F++W LI
Sbjct: 791 FHPGDMRKFTAVDVPEL--RHMVDCIVFPSRGPRPHPDEMSGSDLDGDMYFVTWREGLIL 848
Query: 854 PCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARS 913
P E P MD+T + +++ V + ++ +FF +Y+ ND LG I+ AHLVHAD++ S
Sbjct: 849 PRENIPAMDFTAQPKKVLRRPVQVSDMIEFFAEYIRNDQLGLIANAHLVHADKETKGIFS 908
Query: 914 SKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYR--A 971
+C+ LA LHS AVDF KTG E+ L+P ++PDFM + DKP+Y S ++GKL+R
Sbjct: 909 ERCMELAKLHSDAVDFPKTGQCPELKGDLRPDKYPDFMMKSDKPQYRSEKIIGKLFRQCQ 968
Query: 972 TLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGAS 1031
LD+ + + + + + D DL +GFE++ A++ +Y ++ ++M+ YG S
Sbjct: 969 ALDNAQRFSPDPV----VEDDGVDQDLIREGFESYTDDAQTQLNIYNTKIRSIMSLYGIS 1024
Query: 1032 TEDEILTG---NLRNRASYLQRDNRRYGDMKDRILLSAKNL----------QNEAKEWFG 1078
+E E+++G ++ R L+ N R+ ++ + + K L Q + KE
Sbjct: 1025 SEGEVVSGCILKVKQRLGLLK--NERF-EVTEYVRARFKTLWRKTRAEFFRQFDEKEESS 1081
Query: 1079 SSCKENEHPQLASAWYHVTYSPSYCKERMA----LLSFPWIVGDILLNIK 1124
+ + E + ASAWY VTYS Y + LLSFPW+V D+L +K
Sbjct: 1082 TDRRREEQLKKASAWYMVTYSDDYNNKPHGASPKLLSFPWVVYDVLGGLK 1131
>gi|260789117|ref|XP_002589594.1| hypothetical protein BRAFLDRAFT_81564 [Branchiostoma floridae]
gi|229274774|gb|EEN45605.1| hypothetical protein BRAFLDRAFT_81564 [Branchiostoma floridae]
Length = 1867
Score = 474 bits (1220), Expect = e-130, Method: Compositional matrix adjust.
Identities = 305/840 (36%), Positives = 470/840 (55%), Gaps = 75/840 (8%)
Query: 322 ADAELIQILSGLSM---ETALMVLQKLHKLKSICYDPVSFVKTQ--LHVLGRNCKSIPLS 376
+D L LS L + + + LH++ + D F Q +N +I +
Sbjct: 315 SDRALPAFLSTLDIAARKDPIATASALHQVADVWLDGDCFCDLQAAFQTELKNASTIDQN 374
Query: 377 SHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKL 436
+ L DH V + + +VTP ++ L PE N VV+ + +F+RV F +ED+SKL
Sbjct: 375 HTEDLPDHYVYA-RKVVVTPTQMLFLKPEPIVENRVVREYG--VDNFIRVAFRDEDFSKL 431
Query: 437 PANALSTSIQRGIFSKPYRTK-IYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMF 495
+ P + + SR+ +L+ GI IG++++++L S SQ+R + WM+
Sbjct: 432 AV------------TNPNSIRCVTSRVKDVLEKGIRIGERNFKYLGSSNSQMREHGCWMY 479
Query: 496 ASNDEV--SAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQD--VEMIPDVE 551
A+ D+ S D+RGWMG + R V+ +R+GQ FSSS + V V+D VE+I DVE
Sbjct: 480 AAADKTTTSTSDIRGWMGDLSHERCVATYVSRLGQFFSSSWNAVSVSVEDRSVELIADVE 539
Query: 552 VTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRN--SFRK 609
+S T+ FSDGIGKIS+ A++VA G+S PSAFQIRY G KGV+A D + +
Sbjct: 540 TSS--GTHTFSDGIGKISVPLAKKVAAALGVSPVPSAFQIRYAGCKGVLAQDPTLGNTDR 597
Query: 610 LSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLG 669
+ +R SM KFES ++ L VT + LNR+ I+LLS L V D F +Q++ L L
Sbjct: 598 IQIRGSMKKFESEHKTLEVTSVTTPGVLSLNRQAITLLSGLNVPDMEFLKLQERVLNQLA 657
Query: 670 KMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRC 729
+MLI EAA+ + L+G + + G EP+ MLL+ + N++ +L R
Sbjct: 658 EMLILDEAAV---KALSGARVGMDIRALHDSGISLTTEPFFRSMLLAVYRNRMGELLRRT 714
Query: 730 RIYVP--KGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKV 787
RI +P +GR+++G DETG L YGQVF++ +RE + + H +G+V
Sbjct: 715 RIEIPAGEGRIMMGTMDETGKLQYGQVFIQ--YSREVDKPQADKVVH---------QGQV 763
Query: 788 LVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFIS 847
VTKNPC HPGD+R AV +L + VDCI+FP +G RPHP+E SG DLDGD++F++
Sbjct: 764 TVTKNPCFHPGDMRKFTAVDVPEL--RHMVDCIVFPSRGPRPHPDEMSGSDLDGDMYFVT 821
Query: 848 WDNDLI-PCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADR 906
W LI P E P MD+T + R++ V ++ +FF +Y+ ++ LG I+ AHLVHAD+
Sbjct: 822 WREGLILPRENRPAMDFTAQPKRVLHRPVQESDMIEFFAEYIGSNQLGLIANAHLVHADK 881
Query: 907 DPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLG 966
+ S KC+ LA LHS AVD KTG E+ L+P+ +PDFM + DKP+Y S ++G
Sbjct: 882 EDQGIFSQKCIDLAQLHSDAVDAPKTGQCPELKGDLRPEVYPDFMMKSDKPQYRSERIIG 941
Query: 967 KLYR--ATLDSIMQIRSNAIWSEKIA--EASYDHDLEVDGFEAFLGVAESHKEMYEEEMN 1022
+L+R LDS Q RS ++ I + DHDL +GF++++ A++ +Y M
Sbjct: 942 RLFRKCQELDSANQ-RSG---TDDIVYHTSGIDHDLVREGFDSYIEDAQTQLNIYNNMMM 997
Query: 1023 ALMNYYGASTEDEILTG---NLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWF-- 1077
++M+ YG ++E E+++G ++ R L+ N R+ ++ + + K L + + F
Sbjct: 998 SIMSLYGITSEGEVVSGCILKVKQRLGLLK--NERF-EVTEYVRARFKTLWRKTRAEFFK 1054
Query: 1078 -------GSSCKENEHPQLASAWYHVTYSPSYCKE----RMALLSFPWIVGDILLNIKSV 1126
++ E + ASAWY VTYS +Y ++ LLSFPW+V D+L ++K +
Sbjct: 1055 QFDVEELSEERRKEEQLKRASAWYMVTYSDAYDEKPHDPSPKLLSFPWVVYDVLASLKKI 1114
>gi|384245028|gb|EIE18524.1| RdRP-domain-containing protein, partial [Coccomyxa subellipsoidea
C-169]
Length = 723
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 276/758 (36%), Positives = 424/758 (55%), Gaps = 73/758 (9%)
Query: 405 ELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILT 464
++E SN V+++ +Y+ F+RVTF EE+ +L + I P R+
Sbjct: 1 QVELSNRVIRHHRQYSDRFLRVTFCEENGGRL---CFANDI-------PRLEDYMDRMEG 50
Query: 465 ILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDE-VSAEDVRGWMGCFNKIRSVSKCA 523
IL+DG+ + D+H++ LAFS+ Q+R S W +A+ D +A D+R WMG F+ IR V+K
Sbjct: 51 ILKDGLELADRHFDLLAFSSGQVREQSAWFWAAPDSGPTAADIRAWMGDFDAIRCVAKFT 110
Query: 524 ARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQK---- 579
ARMGQ FSS+ TL + V+ +PDVE N YCFSDG+G+IS+ +R VA +
Sbjct: 111 ARMGQCFSSTVDTLKLQAYTVQTVPDVER----NGYCFSDGVGRISVELSRAVADRLEQL 166
Query: 580 --CGLSHTPSAFQIRYGGYKGVIAVDRN-SFRKLSLRRSMLKFESRNRMLNVTKWSESMP 636
C P A+QIRY G KG++++ ++ +R SM KFE+ +ML + ++ +P
Sbjct: 167 GRCPAGWLPRAYQIRYAGCKGMVSLHMGLRGKRFEVRPSMNKFEASAQMLEICDYARYVP 226
Query: 637 CFLNREIISLL--STLGVKDEVFEAMQQQQLILLGKMLINREAALDV--LQKLNGVDSKN 692
+LNR+I++LL LGV + VF+ +Q + + +N+ L L + D+
Sbjct: 227 GYLNRQIVTLLMQKCLGVPNSVFQRLQARTALFN----LNKSGQLRCFCLNLIKWGDAAI 282
Query: 693 IL--VKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILN 750
+L ++ G++ EPYL +LL + L DLK++ R+ VPK LL+G DE G+L
Sbjct: 283 MLEAAHIIRAGFDVGTEPYLKSILLCLRAHLLQDLKAKTRVRVPKAALLMGVMDEEGVLE 342
Query: 751 YGQVFVRV-TMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEM 809
GQVF+ V ++ L +IV G V+V KNPC HPGDVR +A
Sbjct: 343 PGQVFLSVNSLPTMAL--------------PAIVTGTVVVAKNPCFHPGDVRKFQARPLF 388
Query: 810 KLEEKDY-VDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI-PCETEPPMDYTGRR 867
+ E + V+C++FPQKG+RPHP+ECSG DLDGD +F+SW+ L+ P PM + +
Sbjct: 389 RSPELHHLVNCLVFPQKGQRPHPDECSGSDLDGDQYFVSWEPGLLFPGPNREPMSFHSQD 448
Query: 868 SRIMDHDVT--LEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSM 925
++ + ++ +FF+DY+ ND LG I+ AHL AD PD A+ S+CL LA LHS
Sbjct: 449 PVLIPEGQASLVGDVAQFFMDYIFNDLLGIIANAHLATADIKPDGAQCSQCLQLARLHSN 508
Query: 926 AVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIW 985
AVDF K+G PAE L+P +PDFM +++K + S ++G+L+RA + + + +
Sbjct: 509 AVDFTKSGRPAEFSRDLRPLSYPDFMMKKNKETHESSTIIGQLFRA-----ITVPTPPLL 563
Query: 986 SEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRA 1045
S+ +E D D+ V+GF+ F+ A+ + YE + +MN YG E EI++G +
Sbjct: 564 SDIASETQPDPDIMVEGFQQFIPAAQEARTRYEHALVQIMNQYGVHNEAEIVSGCI---- 619
Query: 1046 SYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGS--SCKENEHPQLASAWYHVTYSPSYC 1103
S + R+ GD+K I+ + + L+ + + F + + Q A AWYHVTYSP+Y
Sbjct: 620 SKFAKHRRKKGDVKTMIIDAVRALRKKNRAEFPGPLAARSRRALQKACAWYHVTYSPAYS 679
Query: 1104 KERMA-----------LLSFPWIVGDILLNIKSVNSRK 1130
A L+SFPWI+ D L IK+ R+
Sbjct: 680 GYGPAAALSTRELDARLISFPWILTDHLAVIKTGPRRR 717
>gi|312283345|dbj|BAJ34538.1| unnamed protein product [Thellungiella halophila]
Length = 998
Score = 464 bits (1193), Expect = e-127, Method: Compositional matrix adjust.
Identities = 304/832 (36%), Positives = 445/832 (53%), Gaps = 64/832 (7%)
Query: 161 DCCFKVEILFEDVLETVGFSLDEGATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHI 220
+C +K+E+L D+ + +G +L +L P+++ + + + P +
Sbjct: 190 NCDYKLELLVRDIRTVRQYRASDGFV---LLLQLASSPRVWYRTADDDIYETCP-----V 241
Query: 221 CKEDFDFFWVRTTDFSVTKSIGCSTSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGE 280
D D W+RTTDF+ +IG S+ LL+ P Y E+K L+
Sbjct: 242 DLLDDDDPWIRTTDFTQAGAIGRCLSY-----RVLLS-------PRY-ENKLISALDYLR 288
Query: 281 EFCTTSEIV---PLVKCRPGFN---------------LSHEVLFQLNSLVHNQKVSLVAA 322
E V P ++ PGF +S E++F +NS++H ++
Sbjct: 289 RQRVKEERVRWPPRIRDEPGFGEAVSDHFFCIHHKEGISFEIMFLVNSVLHRGVLNQFQL 348
Query: 323 DAELIQILSGLSMETALMVLQKLHKLKSICYDPVSFVKTQLHVLGRNCKSIPLSSHKRLI 382
+L + + L+ L +D +K + +N K L SH+R
Sbjct: 349 TERFFDLLRNQPKDVNIASLKHLCTYNRPVFDAYKRLKLVQEWVLKNPKL--LVSHERSD 406
Query: 383 DHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALS 442
D + R ++TP + YCL PE+E SN V++ + + F+RVTF++E + +N LS
Sbjct: 407 D--ISEIRRLVITPTRAYCLPPEVELSNRVLRKYKAVSERFLRVTFMDESMQTMNSNVLS 464
Query: 443 ---TSIQRGIFSKPY--RTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFAS 497
I + + S + +T ++ R+ T+L DG + + Y FLAFS++QLR+ S W F+
Sbjct: 465 YFVAPIVKDLTSSSFSQKTHVFKRVKTLLTDGFKLCGRKYSFLAFSSNQLRDRSAWFFSE 524
Query: 498 NDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEM-IPDVEVTSDG 556
+ D++ WMG F K ++V+KCAARMG FSS+ T+ V +V+ +P++E
Sbjct: 525 DGNTRVSDIKIWMGKF-KDKNVAKCAARMGLCFSSTYATVDVMPHEVDTELPEIE----R 579
Query: 557 NTYCFSDGIGKISLSFARQVAQKCGLS--HTPSAFQIRYGGYKGVIA--VDRNSFRKLSL 612
N Y FSDGIG IS A +V +K L +TP A+QIRY G+KGV+A + +L+L
Sbjct: 580 NGYTFSDGIGTISPDLADEVMEKLKLDVHYTPCAYQIRYAGFKGVVARWPSKGDGIRLAL 639
Query: 613 RRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKML 672
R SM KF S++ +L + W+ P FLNR+IISLLS LGV DE+F MQ+ L L ++L
Sbjct: 640 RHSMNKFHSKHTILEICSWTRFQPGFLNRQIISLLSVLGVPDEIFWDMQESMLCKLNRIL 699
Query: 673 INREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIY 732
+ + A +VL + + N ML G++P +EP+L ML S QL L+ + RI+
Sbjct: 700 DDIDVAFEVLTT-SCAEQGNTAAIMLSAGFKPKIEPHLRGMLSSVRTAQLWGLREKSRIF 758
Query: 733 VPKGRLLIGCFDETGILNYGQVFVRVTMTR-EELESKDQSFFHRVDDKTSIVKGKVLVTK 791
V GR L+GC DE GIL GQ F++V+ E S+ S F +VKG V + K
Sbjct: 759 VSSGRWLMGCLDEAGILEQGQCFIQVSKPSIENCFSRHGSRFKESKADMQVVKGYVAIAK 818
Query: 792 NPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDND 851
NPCLHPGDVR+LEAV +L D DC+IFPQ G+RPH NE SG DLDGD++F++WD
Sbjct: 819 NPCLHPGDVRILEAVDVPQLH--DMYDCLIFPQNGDRPHTNEASGSDLDGDLYFVAWDQK 876
Query: 852 LIPCETEP--PMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPD 909
LIP E M Y + + + V ++I FFV M N+ LG I AH+VHADR
Sbjct: 877 LIPPSRESWHAMQYDAAKEKTLGRPVNHQDIIDFFVKNMANEHLGTICNAHVVHADRSEY 936
Query: 910 KARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYIS 961
A +CL LA L + AVDF KTG MP LKPK +PDFM +ED Y+S
Sbjct: 937 GAMDEECLLLAELAATAVDFPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYLS 988
>gi|115448543|ref|NP_001048051.1| Os02g0736200 [Oryza sativa Japonica Group]
gi|113537582|dbj|BAF09965.1| Os02g0736200, partial [Oryza sativa Japonica Group]
Length = 476
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 231/457 (50%), Positives = 312/457 (68%), Gaps = 21/457 (4%)
Query: 399 IYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKI 458
+Y GPE+ SN VV+NF+ +F+R++FV+ED KL A LS G RT +
Sbjct: 36 VYFYGPEINVSNRVVRNFSSDIENFLRISFVDEDCEKLRATDLSPRSASG--HDANRTAL 93
Query: 459 YSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRS 518
Y R+L++L DGI IG K++EFLAFS+SQLR+NS WMFAS ++A D+R WMG F IR+
Sbjct: 94 YKRVLSVLSDGITIGGKNFEFLAFSSSQLRDNSAWMFASRQGLAASDIRTWMGDFRNIRN 153
Query: 519 VSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQ 578
V+K AAR+GQ FSSS +TL V +VE I D++ +G + FSDGIGKIS +FA +VA
Sbjct: 154 VAKYAARLGQSFSSSTETLKVQKYEVEEISDIK---NGTQHVFSDGIGKISSAFANEVAM 210
Query: 579 KCGLSH-TPSAFQIRYGGYKGVIAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPC 637
KC L PSAFQIRYGGYKGV+AVD S KLSLR+SMLKF+S N ++V +S+ P
Sbjct: 211 KCNLKRFAPSAFQIRYGGYKGVVAVDPTSRWKLSLRKSMLKFQSDNITVDVLAYSKYQPG 270
Query: 638 FLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKM 697
FLNR++I+LLSTLGV+D VFE Q++ + L KM+ + +AA++ ++ + + N + ++
Sbjct: 271 FLNRQLITLLSTLGVRDSVFEQKQEEAVNQLNKMVTDPQAAIEAIELMPMGEITNAVKEL 330
Query: 698 LLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVR 757
LL GY+P+ EPYLSM+L + ++L +LK++ RI +PKGR ++GC DET L YGQVF+R
Sbjct: 331 LLCGYQPDDEPYLSMLLQTFRASKLLELKTKSRILIPKGRAMMGCLDETRTLKYGQVFIR 390
Query: 758 VTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYV 817
T D+ V GKV++ KNPCLHPGD+R+L AV L
Sbjct: 391 ATSGVN-------------DNDRFTVTGKVVIAKNPCLHPGDIRILHAVDVPVLHH--MF 435
Query: 818 DCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIP 854
+C++FPQ+G RPHPNECSG DLDGDI+F+SWD LIP
Sbjct: 436 NCVVFPQQGPRPHPNECSGSDLDGDIYFVSWDPSLIP 472
>gi|119370382|gb|ABL68088.1| putative RNA-directed RNA polymerase 1 [Nicotiana attenuata]
Length = 1044
Score = 444 bits (1141), Expect = e-121, Method: Compositional matrix adjust.
Identities = 298/812 (36%), Positives = 448/812 (55%), Gaps = 62/812 (7%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKA 64
T+ V P A+ + FLE+ G +V+ALE+ +S R +VQF +
Sbjct: 4 TIQVFGFPYLLSAEAVKTFLENHTGNGTVYALEV--KQSKGGRRAFAKVQFANNKSAELI 61
Query: 65 QNLSLNDKLVFNSQNLKISETHSDIVPRPVKAQHRVEDGV-LHVGVMCKEERLRVLQTFE 123
+L+ ++ L + L+ E +DIV QH DGV L+ G +++ VL + +
Sbjct: 62 MDLA-SEGLYYGPSYLQAWEMKTDIVQPRTYVQHM--DGVTLNFGCQISDKKFAVLGS-K 117
Query: 124 GVRGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFSLDE 183
V +++ F++ S+D +K+++ +E++ + V
Sbjct: 118 DVSIKFGIGLKKIYFFL---------------SYGSTD--YKLQLSYENIWQVV-LHCPY 159
Query: 184 GATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKSIGC 243
G +L +L P+I++++ S F KE D WVRTTDF+ + IG
Sbjct: 160 GQKAQFLLLQLFGAPRIHKRLED-SCNSFF--------KETPDDQWVRTTDFTPS-WIGL 209
Query: 244 STSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGE-EFCTTSEIVPLVKCRPGFNLSH 302
S+S E NG+ + S F +YKE + F +VP+V G L +
Sbjct: 210 SSSLCLEFHNGVRLPNFSGSFFYYKESGPSYFTDWFTFSFVQKLSLVPIVHLPEGVELPY 269
Query: 303 EVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALM--VLQKLHKLKSICYDPVSFVK 360
++LF+++SL+ + +A + Q++ A + L+KL+ LK CYDPV ++
Sbjct: 270 KILFKISSLIQHGCFPGLALNFNFFQLVDPRRRNIACIEHALEKLYYLKECCYDPVRWLT 329
Query: 361 TQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYA 420
Q ++ + +P S L D ++ R LVTP K+Y GPE+ SN V++N+++
Sbjct: 330 EQYDEYLKH-RQLPKSPSITL-DDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDI 387
Query: 421 SDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFL 480
+F+RV+FV+E+W K+ + L + R RT IY RIL+ L++G VIGDK +EFL
Sbjct: 388 DNFLRVSFVDEEWEKIHSTDL---LPRASTGNGIRTDIYLRILSTLRNGFVIGDKKFEFL 444
Query: 481 AFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVP 540
AFS+SQLR+NSVWMFAS ++A D+R WMG F +IR+V+K AAR+GQ F SS++TL V
Sbjct: 445 AFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFRQIRNVAKYAARLGQSFGSSRETLSVS 504
Query: 541 VQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVI 600
+VE+IPDV + G Y FSDGIGKIS FA+ + F IRYGGYKGV+
Sbjct: 505 RHEVEVIPDVVCSLHGTNYIFSDGIGKISADFAKMRPSVYSI-----FFSIRYGGYKGVV 559
Query: 601 AVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAM 660
AVD S KLSLR SMLK+ES N L+V WS+ PC+LNR++++LLSTLGVKD+VFE
Sbjct: 560 AVDPYSSMKLSLRNSMLKYESNNIKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVFEQK 619
Query: 661 QQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHEN 720
Q + + L +L + A + L+ ++ ++ NIL +ML GY P+ EP+LSMML + +
Sbjct: 620 QNEAVDQLDAILHDSLKAQEALELMSPGENTNILKEMLNCGYMPDAEPFLSMMLQTFRAS 679
Query: 721 QLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMT-REELESKDQSFFHRVDDK 779
+L DL++R RI++ K + L YGQVFV+ T T R + + F +D
Sbjct: 680 KLLDLRTRSRIFIAKWDAWL----NPEPLEYGQVFVQFTGTGRRQFYEESHPF----NDS 731
Query: 780 TS-----IVKGKVLVTKNPCLHPGDVRVLEAV 806
S ++G V+V KNPCLHPGD+RVL AV
Sbjct: 732 GSTNCNFTLEGNVVVAKNPCLHPGDIRVLRAV 763
Score = 191 bits (486), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 102/258 (39%), Positives = 148/258 (57%), Gaps = 11/258 (4%)
Query: 879 EIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEM 938
E+ ++F +Y++N +LG I+ AH+V ADR+P A S+ C LA L S+AV F KTG PA +
Sbjct: 772 EVGEYFTNYIVNGSLGIIANAHVVFADREPAMAMSAPCKQLAQLFSIAVAFPKTGVPAGI 831
Query: 939 PLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDL 998
P L+P ++PDFME+ DKP Y S V+GKL+R D Q S A ++ +A SY D+
Sbjct: 832 PSQLRPTDYPDFMEKPDKPTYHSEKVIGKLFRKVKDKTPQATSIATFTMDVARKSYAGDM 891
Query: 999 EVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDM 1058
V+GFE + A +K Y+ ++ LM+YYG TE EIL+G + + R
Sbjct: 892 IVNGFEDYTDEAFYYKSEYDNKLGNLMDYYGIKTEAEILSGGVMKASKTFDRRKD----- 946
Query: 1059 KDRILLSAKNLQNEAKEWFGSSCKENEHPQLASAWYHVTYSPSYCK------ERMALLSF 1112
+ I ++ ++L+ EA+ WF ++ ASAWYHVTY +Y R +SF
Sbjct: 947 AEAIGVAVRSLRKEARTWFKKRSDIDDMLAKASAWYHVTYHHTYWGLYNEGLRRDHFISF 1006
Query: 1113 PWIVGDILLNIKSVNSRK 1130
PW V D L+ IK +RK
Sbjct: 1007 PWCVYDQLIQIKKAKARK 1024
>gi|115458854|ref|NP_001053027.1| Os04g0465700 [Oryza sativa Japonica Group]
gi|113564598|dbj|BAF14941.1| Os04g0465700, partial [Oryza sativa Japonica Group]
Length = 377
Score = 431 bits (1107), Expect = e-117, Method: Compositional matrix adjust.
Identities = 217/356 (60%), Positives = 265/356 (74%), Gaps = 5/356 (1%)
Query: 772 FFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHP 831
+F+ D KT+ V GKV +TKNPCLHPGD+RVLEA+Y+ L VDC++FPQ+GERPHP
Sbjct: 1 YFYNDDGKTATVVGKVAITKNPCLHPGDIRVLEAIYDPDL--VGMVDCLVFPQRGERPHP 58
Query: 832 NECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMIND 891
NECSGGDLDGD++FI+WD+ LIP + + PMDYT R RIMDH VTLEEI K FVDYMIND
Sbjct: 59 NECSGGDLDGDLYFITWDDKLIPEKVDTPMDYTATRPRIMDHVVTLEEIQKHFVDYMIND 118
Query: 892 TLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFM 951
+LGAISTAHL+HADR P KARS +CL LATLHSMAVDFAKTGAPAEMP L+P+E+PDFM
Sbjct: 119 SLGAISTAHLIHADRSPLKARSPECLQLATLHSMAVDFAKTGAPAEMPRTLRPREYPDFM 178
Query: 952 EREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEAS--YDHDLEVDGFEAFLGV 1009
ER +KP YIS GVLGKLYR+ + + + + S A+ S YD DLEV G + FL
Sbjct: 179 ERWEKPMYISNGVLGKLYRSAMGHMEKSGDSGALSSSSAQPSPTYDPDLEVPGSDEFLQA 238
Query: 1010 AESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNL 1069
AE + E+YEE++ LMNYY A EDEILTGN+RN+ YL+RDN+RY +MKDRI+ + L
Sbjct: 239 AEEYYELYEEKLTTLMNYYRAELEDEILTGNIRNKMLYLKRDNKRYFEMKDRIVAAVDAL 298
Query: 1070 QNEAKEWFGSSCKENEHPQLASAWYHVTYSPSYCKERMALLSFPWIVGDILLNIKS 1125
EA+ W SS KE + ++ASAWY VTY P + + SFPWI D LL IK+
Sbjct: 299 HREARGWLLSSRKEEDASRMASAWYRVTYHPDRRRGKR-FWSFPWIACDNLLAIKA 353
>gi|260801473|ref|XP_002595620.1| hypothetical protein BRAFLDRAFT_64730 [Branchiostoma floridae]
gi|229280867|gb|EEN51632.1| hypothetical protein BRAFLDRAFT_64730 [Branchiostoma floridae]
Length = 1282
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 276/764 (36%), Positives = 408/764 (53%), Gaps = 60/764 (7%)
Query: 391 RALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIF 450
R VTP ++ + PE+ N +++ + + +FMRV+ +ED+ KL A
Sbjct: 259 RVFVTPTRLMFMHPEIVRDNRILRKYGE--DNFMRVSIRDEDFCKLSAVGGEEET----- 311
Query: 451 SKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWM 510
++R+ LQDG+++GD+ Y FLA S SQLR ++VW FAS+ + +AE +R M
Sbjct: 312 -------TFTRVKKFLQDGLLVGDRKYVFLAASNSQLREHNVWFFASDGKNTAESIRKDM 364
Query: 511 GCFNKIRSVSKCAARMGQLFSSSKQ--TLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKI 568
G F+ I+ + ARMGQ FS+++ T ++ +V IP+V+ N YCFSDGIGKI
Sbjct: 365 GDFSDIKCPATVLARMGQCFSNTEPSVTALISAGEVVRIPEVK-GGYPNVYCFSDGIGKI 423
Query: 569 SLSFARQVAQK----CGLSHTPSAFQIRYGGYKGVIAVDRN-SFRKLSLRRSMLKFESRN 623
S S A++V ++ G + PSA+QIRYGG KGV+AVD + + +R SM+KF S +
Sbjct: 424 SQSLAQKVNERRAIGRGETEVPSAYQIRYGGVKGVVAVDPSLDSDVMEVRPSMMKFLSFD 483
Query: 624 RMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQ 683
+ + + S +LNR++I++LS LGV D+ F+ +Q+ L L ML+ + A + ++
Sbjct: 484 QQIEICMTSHPGRLYLNRQVITILSALGVPDQTFQQLQEAMLQNLSDMLVREDVAFESMK 543
Query: 684 KLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPK--GRLLIG 741
+ L ++ G EP+ ML L +L+ R RI +P GR ++G
Sbjct: 544 R-RAQPLGLPLGRLSRCGLHVTTEPFFRAMLQKMFTCFLGELRRRARIEIPPEYGRNMLG 602
Query: 742 CFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVR 801
DETG L YGQVFV+ T E++ K + V G V+VT+NPC HPGD+R
Sbjct: 603 VLDETGTLEYGQVFVQYT---EDITDKGGQ---------TKVTGDVVVTRNPCFHPGDLR 650
Query: 802 VLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI-PCETEPP 860
L AV L VD I+FP KG RPHPNE SGGDLDGD FF++W LI P + P
Sbjct: 651 KLRAVDIPSLHH--MVDVIVFPSKGPRPHPNEMSGGDLDGDQFFVTWYPGLIFPKPNQGP 708
Query: 861 MDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLA 920
MD+T + + + V +I F V+Y+ ND LG I+ AHL A + + SSKCL LA
Sbjct: 709 MDFTAQPKKELP-SVETHDIIDFIVEYIANDRLGQIANAHLAFAHTEKEGIFSSKCLGLA 767
Query: 921 TLHSMAVDFAKTGAPAEMPLALKPKEFPDFM-EREDKPRYISFGVLGKLYRATLDSIMQI 979
HS AVDF KTG + + +P E+PDFM +++ K S V GK+YR L I ++
Sbjct: 768 KKHSDAVDFPKTGVCPTLKMEERPLEYPDFMGKKKGKTSRRSEAVQGKMYRECL-RIERV 826
Query: 980 RSNAIWSEKIAEAS--YDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEIL 1037
S+ + + D D + + + K+ + +++ LM+ YG TE E +
Sbjct: 827 CSHLHKDKDTGGKNIEIDPDFTHKDRKRYAVSSRQAKDDFYDKLQDLMSQYGIDTEAEAV 886
Query: 1038 TGNLRNRASYLQRDNRRYGD---MKDRILLSAKNLQNEAKEWFGSS-------CKENEHP 1087
+G +++ R+ KDRI K + E FG C EN
Sbjct: 887 SGCFVRMHHHMEDRYERFEAERIAKDRIAHLRKQTRQEFFAEFGGEDSIDLDHCPENVMA 946
Query: 1088 QLASAWYHVTYSPSYCKERMALLSFPWIVGDILLNIKSVNSRKA 1131
+ ASAWYH +YS LLSFPW+V D+L +K +R +
Sbjct: 947 K-ASAWYHASYSTGNPN----LLSFPWVVADVLAELKKRATRSS 985
>gi|402075074|gb|EJT70545.1| RNA-dependent RNA polymerase 1 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 1551
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 288/874 (32%), Positives = 447/874 (51%), Gaps = 79/874 (9%)
Query: 298 FNLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVS 357
NL EV +QL + + + + E +Q LS ++ A MVL+ + YDP+
Sbjct: 343 INLPWEVRYQLEVCISRRHLLESSITLEFLQQLSKMTPREARMVLEYPIDRRVKFYDPML 402
Query: 358 FVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFA 417
++ R + P H L+ + +A+VTP +Y P +ET+N V++++
Sbjct: 403 LLQE-----AREARYAP-DVHPELLPEYCILMRKAIVTPSTVYLNSPTVETTNRVLRHYY 456
Query: 418 KYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHY 477
+ FMR+ F +E + NA T QR ++Y+R+ +L++GI IGD+HY
Sbjct: 457 DFRDRFMRIQFTDE-LHRGRINA--TQDQR------VNDELYTRVYRVLRNGIFIGDRHY 507
Query: 478 EFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTL 537
+FLAF SQ+R +S + FA+ +V+ + +R WMG F IR+V K AAR+GQ FS+++
Sbjct: 508 QFLAFGNSQMRESSAYFFAAVGDVTCDSIRAWMGDFRHIRNVGKYAARLGQCFSTTRNID 567
Query: 538 VVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYK 597
VQ ++ IPD+E N YCFSDG+GKIS ++ +++Q+ L+ PSAFQ R GG K
Sbjct: 568 STSVQWIKSIPDIE----ENGYCFSDGVGKISQFWSTRISQRLSLNTYPSAFQFRMGGRK 623
Query: 598 GVIAV--DRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDE 655
G++ V D + +R S KF++ + L V + S+ LNR+ I +LS LG++D
Sbjct: 624 GILTVWPDVKGM-DIHVRPSQEKFQTEHSRLEVIRCSQYAVATLNRQTIPILSALGIEDH 682
Query: 656 VFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNI---LVKMLLQGYEPNVEPYLSM 712
VFE M QL K + + AA+ +L VD + L ++++ G + EP++
Sbjct: 683 VFEDMLADQLASYDKAMEDPVAAMSLLNLY--VDENQMTKALSQLIMAGLMKSQEPFVWT 740
Query: 713 MLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGIL--NYGQVFVRVTMTREELESKDQ 770
ML + LK + RI V KG ++GC DETG L +Y +V S+
Sbjct: 741 MLRLWRTWSIKSLKEKARIVVEKGAFVLGCVDETGKLRGHYARVKTHPDQRPRLNHSELP 800
Query: 771 SFFHRVDDKTS----IVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKG 826
F +V D + +V G +V +NP LHPGD+R++EAV +L + D ++FP+ G
Sbjct: 801 QIFLQVPDGPNGLYKVVTGTCVVGRNPSLHPGDLRIVEAVDVPEL--RHLRDVVVFPKSG 858
Query: 827 ERPHPNECSGGDLDGDIFFISWDNDLIPCETE---PPMDYTGRRSRIMDHDVTLEEIHKF 883
+R P+ CSGGDLDGD +FI WD L+P E PPM+Y +S D DVT +++ +F
Sbjct: 859 DRDIPSMCSGGDLDGDDYFIIWDERLVPPPEERSYPPMNYEAEKSLDPDRDVTADDLRRF 918
Query: 884 FVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALK 943
FV +M N +L I+ AHL HA D +S C+ LA LHS AVD+ KTG PA + L
Sbjct: 919 FVLHMKNHSLPTIAHAHLAHA--DCLGVKSEVCIELARLHSQAVDYPKTGIPAVVRRGLI 976
Query: 944 PKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGF 1003
PK++P FME+ + Y S +LGKLY D + Q + + E + ++ + ++D
Sbjct: 977 PKQYPHFMEKSTRRTYHSGRILGKLY----DKVHQATFDPAY-EMVFDSRILNKYKLDA- 1030
Query: 1004 EAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRA----SYLQRDNRRYGDMK 1059
A L A K Y++ M +M TE E+ + + +R +Y ++N
Sbjct: 1031 -ATLRKARQMKTKYDQAMRRIMGQGDIGTEFEVFSSFVLSRPRVGNAYKHQENVGRESAT 1089
Query: 1060 DRILLSAKNLQNEAKEWFGSSCKENEHPQLAS---------------AWYHVT-----YS 1099
+ L K ++ A+ G K ++ A Y VT +
Sbjct: 1090 LKSLFRTKCIEAAAELAEGDDAKGGGGVKIPPSLLRHNLDVMGPFVVAMYRVTDEEVRIA 1149
Query: 1100 PSYCKER--------MALLSFPWIVGDILLNIKS 1125
CK R M L++FPWI +L I +
Sbjct: 1150 LHECKSRGARPNPKSMPLITFPWIFDTVLTEIAT 1183
>gi|260801457|ref|XP_002595612.1| hypothetical protein BRAFLDRAFT_64722 [Branchiostoma floridae]
gi|229280859|gb|EEN51624.1| hypothetical protein BRAFLDRAFT_64722 [Branchiostoma floridae]
Length = 1207
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 271/784 (34%), Positives = 410/784 (52%), Gaps = 92/784 (11%)
Query: 366 LGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMR 425
LGR S+P + + R +VTP + L PE+ N +++++ + F+R
Sbjct: 273 LGRQEMSLPAT---------LRYVRRVIVTPTTLLFLQPEIMFENRMLRDYGE--EFFLR 321
Query: 426 VTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSAS 485
V+F++E + KL Q GI + I++R+ +LQ G+ +G+++Y FLA S S
Sbjct: 322 VSFLDEGFQKL---------QGGIATGLEEEDIFARVRNVLQTGVRVGERYYRFLAASNS 372
Query: 486 QLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVE 545
QLR + VW F+ + + +AE +R MG F+ R + ARMGQ FS+++ T+ +
Sbjct: 373 QLRQHGVWFFSDDGKNTAESIRAEMGDFSGCRCPATYLARMGQCFSTTEPTVANVGNNAV 432
Query: 546 MIPDVEVTSDG---NTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAV 602
I D+ D YCFSDGIGKIS AR KG I
Sbjct: 433 EISDITGGYDPVNRKPYCFSDGIGKISKDLAR----------------------KGEI-- 468
Query: 603 DRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQ 662
+ R SM KF S + ++ + S FLNR++I++LS LGV D VF+ +QQ
Sbjct: 469 -------MQYRSSMNKFWSLHDVIEICTTSHPGRLFLNRQVITILSQLGVPDIVFQQLQQ 521
Query: 663 QQLILLGKMLINREAALDVL---QKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHE 719
++L L M + +A + L ++ G+ + ++L G + EP+ ML ++
Sbjct: 522 ERLFELADMFLLETSAAEALCQRAQMKGLPYR----RLLKMGVQLTTEPFFRSMLQKIYK 577
Query: 720 NQLSDLKSRCRIYVPK--GRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVD 777
+ + +++ R RI +P GR+++G DETG L YGQVFV+ T E++ ++ D
Sbjct: 578 SSVGEIRRRARIGIPPEYGRIMLGVLDETGTLEYGQVFVQYT---EDIANQ--------D 626
Query: 778 DKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGG 837
K +++G V+VT+ PCLHPGDVR L+A+ L VD I+FP KG RPHPNE +GG
Sbjct: 627 GKVRVLEGDVVVTRTPCLHPGDVRKLQAIDVPALYH--MVDVIVFPAKGPRPHPNEMTGG 684
Query: 838 DLDGDIFFISWDNDLI-PCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAI 896
DLDGD FF++W DLI E PM + R + +VT++ + F VDY+ ND LG I
Sbjct: 685 DLDGDDFFVTWLPDLIFNGPNEQPMHFRSPTKREVP-NVTIKHLIDFIVDYIKNDRLGLI 743
Query: 897 STAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDK 956
+ AHLV AD +P S C LA HS AVDF KTG ++ +P E+PDFM + DK
Sbjct: 744 ANAHLVFADTEPMGIFSDVCQRLAVKHSDAVDFPKTGVCPDLDKTERPLEYPDFMGKRDK 803
Query: 957 PRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEM 1016
S VLGK+YR I + + + + D+ L + +++ A ++
Sbjct: 804 TTRRSERVLGKMYREC-QMIENVCTQVERKGTVEQVHPDYGLVIGEHVSYVKKARRSRDR 862
Query: 1017 YEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGD---MKDRIL-LSAKNLQNE 1072
Y +++ +LM YG TE E ++G + ++ RY K RI L + Q+
Sbjct: 863 YNDQLRSLMAQYGIETESEAVSGCIVKLHKHMDDRYERYEIERVAKVRIEDLRKRTRQDF 922
Query: 1073 AKEWFGSSCKENEHPQL---ASAWYHVTYSPSYCKERMALLSFPWIVGDIL--LNIKSVN 1127
+E+ G E +HP + ASAWY VTYS K LLSFPW++GDIL LN+K+
Sbjct: 923 FEEFGGEESVELDHPHVLKKASAWYTVTYSDPDAK----LLSFPWVIGDILGILNLKTAT 978
Query: 1128 SRKA 1131
+ +
Sbjct: 979 TART 982
>gi|83773394|dbj|BAE63521.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 1458
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 290/873 (33%), Positives = 442/873 (50%), Gaps = 91/873 (10%)
Query: 299 NLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSF 358
+L +V +QL + N +S E LS L A+ +L+ + K + YDP+
Sbjct: 440 HLPFQVRYQLEVCISNGYLSEFTMTREFAVKLSELGETQAVKLLEHVSAKKQVYYDPMKI 499
Query: 359 VKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCY--RALVTPMKIYCLGPELETSNYVVKNF 416
+ + G IP CY A +TP IY P ++ SN V++ F
Sbjct: 500 FDLKF-IKGVTQAKIP-----------PYCCYMHSARITPSTIYYNTPTVDISNRVIRRF 547
Query: 417 AKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKH 476
++A F+RV F +E KL ST+ +I++RI L +GIVIGD+
Sbjct: 548 IEHADRFLRVRFTDE---KLLGRINSTT-------DSTMDEIFTRIKRALTNGIVIGDRR 597
Query: 477 YEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQT 536
YEFLAF SQ R + + FA ++A ++R WMG FN IR+V+K AAR+GQ FS+++
Sbjct: 598 YEFLAFGNSQFREHGAYFFAPLPNLTAANIRAWMGHFNSIRNVAKHAARLGQCFSTTRAI 657
Query: 537 LVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFAR----QVAQKCGLSHTPSAFQIR 592
PV DV I DVE N Y FSDG+G+IS A+ ++ K PSAFQ R
Sbjct: 658 AGCPV-DVVKIEDVE----RNGYNFSDGVGRISRFLAQMSMSELKIKTPTGEPPSAFQFR 712
Query: 593 YGGYKGVIAVDRNSFRK-LSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLG 651
GG KG++AV + R+ + +R+S KF + + L + +WS+ LNR++I +LSTLG
Sbjct: 713 LGGCKGMLAVSSEAQRQEVHIRKSQFKFAAIHNGLEIVRWSQFSMATLNRQLIIVLSTLG 772
Query: 652 VKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILV-KMLLQGYEPNVEPYL 710
+ D+VF A L L + L + A+ L+K + + + +M+L G+ + EP+L
Sbjct: 773 IPDQVFHAKLHTMLQGLDQALESDPQAIYWLKKYVDPNQMTLTISQMVLDGFRRSKEPFL 832
Query: 711 SMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQ 770
+ +L L LK + RI V +G L+GC DETG+L G +V +E K
Sbjct: 833 TSVLTLWRAWHLKYLKEKARIAVDQGACLLGCMDETGLLQ-GYFHDKVPGNDASVEEKTA 891
Query: 771 SF---FHRV-----DDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIF 822
+ F +V D K+ +++G ++ +NP LHPGD+RV+ AV +L + D ++
Sbjct: 892 ALPEIFVQVSRPEADKKSEVIEGVCILARNPSLHPGDIRVVRAVNVPQL--RHLQDVVVL 949
Query: 823 PQKGERPHPNECSGGDLDGDIFFISWDNDLIPCE-TEPPMDYTGRRSRIMDHDVTLEEIH 881
PQ G+R + CSGGDLDGD + + WD DL+P + PM YT +++ +D DVT+ +I
Sbjct: 950 PQTGDRDIASMCSGGDLDGDDYIVIWDQDLLPKDWFREPMKYTSNKAQDLDRDVTVNDIT 1009
Query: 882 KFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLA 941
FFV YM ND L I+ AHL AD D KC+ LA LHS AVD+ KTG PA +
Sbjct: 1010 SFFVTYMKNDFLPRIAHAHLALADFLEDGVNEEKCIRLAQLHSDAVDYNKTGIPAILTRN 1069
Query: 942 LKPKEFPDFMEREDKPR---YISFGVLGKLYRAT--LDSIMQIRSNAIWSEKIAEASYDH 996
L+P+++P FME+ +KP+ Y S +LG+LY A +D + + E +D
Sbjct: 1070 LEPRKWPHFMEKFNKPKDRIYHSNKILGQLYDAVERIDFVPSL-----------EMPFDK 1118
Query: 997 DL---EVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNR 1053
L E++ + L A++ K Y++ M +M + TE EI + + A+ +D +
Sbjct: 1119 RLLNCEIEVPDDLLTFAKNLKGQYDDAMRRIMAQHEIKTEFEIWSTFVLGHAN-TSKDYK 1177
Query: 1054 RYGDMKDRILLSAKNLQNEAKEWFGSSCKENEHPQLASAWYHVT---------------- 1097
+ ++ + + E G + P LA A Y VT
Sbjct: 1178 FHEEIGAISATLRDTFKKQCYEKVGGRNFDQLAP-LALAMYRVTNEEMSDALNKYRAENS 1236
Query: 1098 -------YSPSYCKERMALLSFPWIVGDILLNI 1123
+ P+ +++ L+SFPWI IL I
Sbjct: 1237 TTGNKFFHKPTPKIDQLPLISFPWIFPHILGKI 1269
>gi|391863075|gb|EIT72389.1| RNA-directed RNA polymerase QDE-1 [Aspergillus oryzae 3.042]
Length = 1458
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 290/873 (33%), Positives = 442/873 (50%), Gaps = 91/873 (10%)
Query: 299 NLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSF 358
+L +V +QL + N +S E LS L A+ +L+ + K + YDP+
Sbjct: 440 HLPFQVRYQLEVCISNGYLSEFTMTREFAVKLSELGETQAVKLLEHVSAKKQVYYDPMKI 499
Query: 359 VKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCY--RALVTPMKIYCLGPELETSNYVVKNF 416
+ + G IP CY A +TP IY P ++ SN V++ F
Sbjct: 500 FDLKF-IKGVTQAKIP-----------PYCCYMHSARITPSTIYYNTPTVDISNRVIRRF 547
Query: 417 AKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKH 476
++A F+RV F +E KL ST+ +I++RI L +GIVIGD+
Sbjct: 548 IEHADRFLRVRFTDE---KLLGRINSTT-------DSTMDEIFTRIKRALTNGIVIGDRR 597
Query: 477 YEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQT 536
YEFLAF SQ R + + FA ++A ++R WMG FN IR+V+K AAR+GQ FS+++
Sbjct: 598 YEFLAFGNSQFREHGAYFFAPLPNLTAANIRAWMGHFNSIRNVAKHAARLGQCFSTTRAI 657
Query: 537 LVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFAR----QVAQKCGLSHTPSAFQIR 592
PV DV I DVE N Y FSDG+G+IS A+ ++ K PSAFQ R
Sbjct: 658 AGCPV-DVVKIEDVE----RNGYNFSDGVGRISRFLAQMSMSELKIKTPTGEPPSAFQFR 712
Query: 593 YGGYKGVIAVDRNSFRK-LSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLG 651
GG KG++AV + R+ + +R+S KF + + L + +WS+ LNR++I +LSTLG
Sbjct: 713 LGGCKGMLAVSSEAQRQEVHIRKSQFKFAAIHNGLEIVRWSQFSMATLNRQLIIVLSTLG 772
Query: 652 VKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILV-KMLLQGYEPNVEPYL 710
+ D+VF A L L + L + A+ L+K + + + +M+L G+ + EP+L
Sbjct: 773 IPDQVFHAKLHTMLQGLDQALESDPQAIYWLKKYVDPNQMTLTISQMVLDGFRRSKEPFL 832
Query: 711 SMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQ 770
+ +L L LK + RI V +G L+GC DETG+L G +V +E K
Sbjct: 833 TSVLTLWRAWHLKYLKEKARIAVDQGACLLGCMDETGLLQ-GYFHDKVPGNDASVEEKTA 891
Query: 771 SF---FHRV-----DDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIF 822
+ F +V D K+ +++G ++ +NP LHPGD+RV+ AV +L + D ++
Sbjct: 892 ALPEIFVQVSRPEADKKSEVIEGVCILARNPSLHPGDIRVVRAVNVPQL--RHLQDVVVL 949
Query: 823 PQKGERPHPNECSGGDLDGDIFFISWDNDLIPCE-TEPPMDYTGRRSRIMDHDVTLEEIH 881
PQ G+R + CSGGDLDGD + + WD DL+P + PM YT +++ +D DVT+ +I
Sbjct: 950 PQTGDRDIASMCSGGDLDGDDYIVIWDQDLLPKDWFREPMKYTSNKAQDLDRDVTVNDIT 1009
Query: 882 KFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLA 941
FFV YM ND L I+ AHL AD D KC+ LA LHS AVD+ KTG PA +
Sbjct: 1010 SFFVTYMKNDFLPRIAHAHLALADFLEDGVNEEKCIRLAQLHSDAVDYNKTGIPAILTRN 1069
Query: 942 LKPKEFPDFMEREDKPR---YISFGVLGKLYRAT--LDSIMQIRSNAIWSEKIAEASYDH 996
L+P+++P FME+ +KP+ Y S +LG+LY A +D + + E +D
Sbjct: 1070 LEPRKWPHFMEKFNKPKDRIYHSNKILGQLYDAVERIDFVPSL-----------EMPFDK 1118
Query: 997 DL---EVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNR 1053
L E++ + L A++ K Y++ M +M + TE EI + + A+ +D +
Sbjct: 1119 RLLNCEIEVPDDLLTFAKNLKGQYDDAMRRIMAQHEIKTEFEIWSTFVLGHAN-TSKDYK 1177
Query: 1054 RYGDMKDRILLSAKNLQNEAKEWFGSSCKENEHPQLASAWYHVT---------------- 1097
+ ++ + + E G + P LA A Y VT
Sbjct: 1178 FHEEIGAISATLRDTFKKQCYEKVGGRNFDQLAP-LALAMYRVTNEEMSDALNKYRAENS 1236
Query: 1098 -------YSPSYCKERMALLSFPWIVGDILLNI 1123
+ P+ +++ L+SFPWI IL I
Sbjct: 1237 TTGNKFFHKPTPKIDQLPLISFPWIFPHILGKI 1269
>gi|317151427|ref|XP_001824654.2| RNA-directed RNA polymerase (Sad-1) [Aspergillus oryzae RIB40]
Length = 1403
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 290/873 (33%), Positives = 442/873 (50%), Gaps = 91/873 (10%)
Query: 299 NLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSF 358
+L +V +QL + N +S E LS L A+ +L+ + K + YDP+
Sbjct: 385 HLPFQVRYQLEVCISNGYLSEFTMTREFAVKLSELGETQAVKLLEHVSAKKQVYYDPMKI 444
Query: 359 VKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCY--RALVTPMKIYCLGPELETSNYVVKNF 416
+ + G IP CY A +TP IY P ++ SN V++ F
Sbjct: 445 FDLKF-IKGVTQAKIP-----------PYCCYMHSARITPSTIYYNTPTVDISNRVIRRF 492
Query: 417 AKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKH 476
++A F+RV F +E KL ST+ +I++RI L +GIVIGD+
Sbjct: 493 IEHADRFLRVRFTDE---KLLGRINSTT-------DSTMDEIFTRIKRALTNGIVIGDRR 542
Query: 477 YEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQT 536
YEFLAF SQ R + + FA ++A ++R WMG FN IR+V+K AAR+GQ FS+++
Sbjct: 543 YEFLAFGNSQFREHGAYFFAPLPNLTAANIRAWMGHFNSIRNVAKHAARLGQCFSTTRAI 602
Query: 537 LVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFAR----QVAQKCGLSHTPSAFQIR 592
PV DV I DVE N Y FSDG+G+IS A+ ++ K PSAFQ R
Sbjct: 603 AGCPV-DVVKIEDVE----RNGYNFSDGVGRISRFLAQMSMSELKIKTPTGEPPSAFQFR 657
Query: 593 YGGYKGVIAVDRNSFRK-LSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLG 651
GG KG++AV + R+ + +R+S KF + + L + +WS+ LNR++I +LSTLG
Sbjct: 658 LGGCKGMLAVSSEAQRQEVHIRKSQFKFAAIHNGLEIVRWSQFSMATLNRQLIIVLSTLG 717
Query: 652 VKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILV-KMLLQGYEPNVEPYL 710
+ D+VF A L L + L + A+ L+K + + + +M+L G+ + EP+L
Sbjct: 718 IPDQVFHAKLHTMLQGLDQALESDPQAIYWLKKYVDPNQMTLTISQMVLDGFRRSKEPFL 777
Query: 711 SMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQ 770
+ +L L LK + RI V +G L+GC DETG+L G +V +E K
Sbjct: 778 TSVLTLWRAWHLKYLKEKARIAVDQGACLLGCMDETGLLQ-GYFHDKVPGNDASVEEKTA 836
Query: 771 SF---FHRV-----DDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIF 822
+ F +V D K+ +++G ++ +NP LHPGD+RV+ AV +L + D ++
Sbjct: 837 ALPEIFVQVSRPEADKKSEVIEGVCILARNPSLHPGDIRVVRAVNVPQL--RHLQDVVVL 894
Query: 823 PQKGERPHPNECSGGDLDGDIFFISWDNDLIPCE-TEPPMDYTGRRSRIMDHDVTLEEIH 881
PQ G+R + CSGGDLDGD + + WD DL+P + PM YT +++ +D DVT+ +I
Sbjct: 895 PQTGDRDIASMCSGGDLDGDDYIVIWDQDLLPKDWFREPMKYTSNKAQDLDRDVTVNDIT 954
Query: 882 KFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLA 941
FFV YM ND L I+ AHL AD D KC+ LA LHS AVD+ KTG PA +
Sbjct: 955 SFFVTYMKNDFLPRIAHAHLALADFLEDGVNEEKCIRLAQLHSDAVDYNKTGIPAILTRN 1014
Query: 942 LKPKEFPDFMEREDKPR---YISFGVLGKLYRAT--LDSIMQIRSNAIWSEKIAEASYDH 996
L+P+++P FME+ +KP+ Y S +LG+LY A +D + + E +D
Sbjct: 1015 LEPRKWPHFMEKFNKPKDRIYHSNKILGQLYDAVERIDFVPSL-----------EMPFDK 1063
Query: 997 DL---EVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNR 1053
L E++ + L A++ K Y++ M +M + TE EI + + A+ +D +
Sbjct: 1064 RLLNCEIEVPDDLLTFAKNLKGQYDDAMRRIMAQHEIKTEFEIWSTFVLGHAN-TSKDYK 1122
Query: 1054 RYGDMKDRILLSAKNLQNEAKEWFGSSCKENEHPQLASAWYHVT---------------- 1097
+ ++ + + E G + P LA A Y VT
Sbjct: 1123 FHEEIGAISATLRDTFKKQCYEKVGGRNFDQLAP-LALAMYRVTNEEMSDALNKYRAENS 1181
Query: 1098 -------YSPSYCKERMALLSFPWIVGDILLNI 1123
+ P+ +++ L+SFPWI IL I
Sbjct: 1182 TTGNKFFHKPTPKIDQLPLISFPWIFPHILGKI 1214
>gi|238505489|ref|XP_002383969.1| RNA-directed RNA polymerase (Sad-1), putative [Aspergillus flavus
NRRL3357]
gi|220690083|gb|EED46433.1| RNA-directed RNA polymerase (Sad-1), putative [Aspergillus flavus
NRRL3357]
Length = 1353
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 290/873 (33%), Positives = 442/873 (50%), Gaps = 91/873 (10%)
Query: 299 NLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSF 358
+L +V +QL + N +S E LS L A+ +L+ + K + YDP+
Sbjct: 335 HLPFQVRYQLEVCISNGYLSEFTMTREFAVKLSELGETQAVKLLEHVSAKKQVYYDPMKI 394
Query: 359 VKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCY--RALVTPMKIYCLGPELETSNYVVKNF 416
+ + G IP CY A +TP IY P ++ SN V++ F
Sbjct: 395 FDLKF-IKGVTQAKIP-----------PYCCYMHSARITPSTIYYNTPTVDISNRVIRRF 442
Query: 417 AKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKH 476
++A F+RV F +E KL ST+ +I++RI L +GIVIGD+
Sbjct: 443 IEHADRFLRVRFTDE---KLLGRINSTT-------DSTMDEIFTRIKRALTNGIVIGDRR 492
Query: 477 YEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQT 536
YEFLAF SQ R + + FA ++A ++R WMG FN IR+V+K AAR+GQ FS+++
Sbjct: 493 YEFLAFGNSQFREHGAYFFAPLPNLTAANIRAWMGHFNSIRNVAKHAARLGQCFSTTRAI 552
Query: 537 LVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFAR----QVAQKCGLSHTPSAFQIR 592
PV DV I DVE N Y FSDG+G+IS A+ ++ K PSAFQ R
Sbjct: 553 AGCPV-DVVKIEDVE----RNGYNFSDGVGRISRFLAQMSMSELKIKTPTGEPPSAFQFR 607
Query: 593 YGGYKGVIAVDRNSFRK-LSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLG 651
GG KG++AV + R+ + +R+S KF + + L + +WS+ LNR++I +LSTLG
Sbjct: 608 LGGCKGMLAVSSEAQRQEVHIRKSQFKFAAIHNGLEIVRWSQFSMATLNRQLIIVLSTLG 667
Query: 652 VKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILV-KMLLQGYEPNVEPYL 710
+ D+VF A L L + L + A+ L+K + + + +M+L G+ + EP+L
Sbjct: 668 IPDQVFHAKLHTMLQGLDQALESDPQAIYWLKKYVDPNQMTLTISQMVLDGFRRSKEPFL 727
Query: 711 SMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQ 770
+ +L L LK + RI V +G L+GC DETG+L G +V +E K
Sbjct: 728 TSVLTLWRAWHLKYLKEKARIAVDQGACLLGCMDETGLLQ-GYFHDKVPGNDASVEEKTA 786
Query: 771 SF---FHRV-----DDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIF 822
+ F +V D K+ +++G ++ +NP LHPGD+RV+ AV +L + D ++
Sbjct: 787 ALPEIFVQVSRPEADKKSEVIEGVCILARNPSLHPGDIRVVRAVNVPQL--RHLQDVVVL 844
Query: 823 PQKGERPHPNECSGGDLDGDIFFISWDNDLIPCE-TEPPMDYTGRRSRIMDHDVTLEEIH 881
PQ G+R + CSGGDLDGD + + WD DL+P + PM YT +++ +D DVT+ +I
Sbjct: 845 PQTGDRDIASMCSGGDLDGDDYIVIWDQDLLPKDWFREPMKYTSNKAQDLDRDVTVNDIT 904
Query: 882 KFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLA 941
FFV YM ND L I+ AHL AD D KC+ LA LHS AVD+ KTG PA +
Sbjct: 905 SFFVTYMKNDFLPRIAHAHLALADFLEDGVNEEKCIRLAQLHSDAVDYNKTGIPAILTRN 964
Query: 942 LKPKEFPDFMEREDKPR---YISFGVLGKLYRAT--LDSIMQIRSNAIWSEKIAEASYDH 996
L+P+++P FME+ +KP+ Y S +LG+LY A +D + + E +D
Sbjct: 965 LEPRKWPHFMEKFNKPKDRIYHSNKILGQLYDAVERIDFVPSL-----------EMPFDK 1013
Query: 997 DL---EVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNR 1053
L E++ + L A++ K Y++ M +M + TE EI + + A+ +D +
Sbjct: 1014 RLLNCEIEVPDDLLTFAKNLKGQYDDAMRRIMAQHEIKTEFEIWSTFVLGHAN-TSKDYK 1072
Query: 1054 RYGDMKDRILLSAKNLQNEAKEWFGSSCKENEHPQLASAWYHVT---------------- 1097
+ ++ + + E G + P LA A Y VT
Sbjct: 1073 FHEEIGAISATLRDTFKKQCYEKVGGRNFDQLAP-LALAMYRVTNEEMSDALNKYRAENS 1131
Query: 1098 -------YSPSYCKERMALLSFPWIVGDILLNI 1123
+ P+ +++ L+SFPWI IL I
Sbjct: 1132 TTGNKFFHKPTPKIDQLPLISFPWIFPHILGKI 1164
>gi|291228412|ref|XP_002734181.1| PREDICTED: RNA-dependent RNA polymerase Family family member
(rrf-3)-like [Saccoglossus kowalevskii]
Length = 1491
Score = 397 bits (1021), Expect = e-107, Method: Compositional matrix adjust.
Identities = 260/770 (33%), Positives = 421/770 (54%), Gaps = 74/770 (9%)
Query: 391 RALVTPMKIYCLGPELETSNYVVKNFAKYASDF-MRVTFVEEDWSKLPANALSTSIQRGI 449
R +VTP ++ L PEL N V++ +Y+ ++ R+ F +E++ +L +N +S S
Sbjct: 386 RVMVTPSRLIFLQPELMFENRVLR---RYSEEYCARLVFKDENYQRL-SNPVSIS----- 436
Query: 450 FSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFA-SNDEVSAEDVRG 508
+ + ++I++ LQ+G + D++YEFLA S SQLR + W +A N +A ++R
Sbjct: 437 ------SDVANKIISTLQNGFQVADRNYEFLACSNSQLREHGCWFYAKDNHGNTAANIRE 490
Query: 509 WMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEM--IPDVEVTSDGNT--YCFSDG 564
WMG F+KIR V+ +RMGQ FS+S++T+ V V+DV + I D+ D N YCFSDG
Sbjct: 491 WMGDFSKIRCVATYMSRMGQCFSTSEETVNVTVEDVTVSNIEDITGGMDINQKPYCFSDG 550
Query: 565 IGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRN-SFRKLSLRRSMLKFESRN 623
IGKIS ++ +K SA+QIRY G KG++A+D + + ++ +R+SMLKF S +
Sbjct: 551 IGKISKQLIEKICEKTEKHVVASAYQIRYAGSKGMVALDPSLTGEQIMIRKSMLKFPSEH 610
Query: 624 RMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQ 683
+ + ++ LNR++I++LS LG++D+VF +Q + L L M + + A L
Sbjct: 611 DNIEIMNLTKPARLHLNRQVITILSGLGIEDKVFLKLQHRMLNNLANMFLKEDVAAAWLS 670
Query: 684 KLN--GVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPK--GRLL 739
+ + G++ K+ M+ G EP+ +L + +++ L +L+ R RI +P R +
Sbjct: 671 RRSQIGINFKH----MMTCGISLTTEPFFKSLLQAVYKSLLGELRRRARIILPPQFARNM 726
Query: 740 IGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIV-KGKVLVTKNPCLHPG 798
+G DETG L YGQVF++ + ++ + K IV G V+VTK PC HPG
Sbjct: 727 MGVIDETGALQYGQVFIQYSKKLDKPQ------------KEKIVHSGPVVVTKFPCYHPG 774
Query: 799 DVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI-PCET 857
DVR +AV L +DCI+FP++G RPHPNE +G DLDGD +F++W +L+ E
Sbjct: 775 DVRKFQAVDIPALYH--LIDCIVFPRQGPRPHPNEMAGSDLDGDEYFVTWLPELLFDREN 832
Query: 858 EPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCL 917
M + + + + V + ++ KF +Y+ ND LG ++ AHL AD+ D S CL
Sbjct: 833 HEAMPFPAAVKKELTNPVEVADMIKFVTEYIQNDCLGLMANAHLAMADQQSDGIFSDMCL 892
Query: 918 HLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRA--TLDS 975
++ L S AVDFAKTG + +P +PDFM ++DK Y S +LGKLYR +L+S
Sbjct: 893 NICKLLSEAVDFAKTGNCPTLDKNQQPNTYPDFMGKQDKTNYKSKHILGKLYRHCWSLES 952
Query: 976 --IMQIRSNAIWSEK---IAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGA 1030
I ++R+++ + + D L G+E L A + Y ++ LM+ YG
Sbjct: 953 ATIPKLRAHSYHKDSDYDVRNVEVDQSLLYPGYEEHLSFANKSLKKYNNQLRLLMSQYGI 1012
Query: 1031 STEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWF---------GSSC 1081
+E E ++G + + R+ D + I +L++ + F G S
Sbjct: 1013 ESEAEAISGCITKLNKRITGKGERF-DAEKVIRAKLAHLRSVTRREFDSSFGDEANGGSD 1071
Query: 1082 KENEHPQL-------ASAWYHVTYSPSYCKERMALLSFPWIVGDILLNIK 1124
++E + ASA+Y+VTYS + L+SFPW+V D+L ++
Sbjct: 1072 NDDEDEERNDKILAKASAFYYVTYS----QRDTQLISFPWVVADLLRKVR 1117
>gi|322701339|gb|EFY93089.1| suppressor of ascus dominance [Metarhizium acridum CQMa 102]
Length = 1296
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 282/863 (32%), Positives = 434/863 (50%), Gaps = 80/863 (9%)
Query: 299 NLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSF 358
+L EV +QL + ++ + +Q L+ L A L+ L I +DP+
Sbjct: 335 HLPFEVRYQLEVCISRGVLNEYTIGIDFLQELNNLRTMDATHRLEYLVDQNEILFDPM-- 392
Query: 359 VKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAK 418
+L + +P + I H +A +TP I P +ETSN VV+ ++
Sbjct: 393 ---KLFSMEDATAFVPAAR----IPHYCTYVRKASITPTTIRFNSPTVETSNRVVRKYSH 445
Query: 419 YASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYE 478
F+RV FVEE + + R +K K++ R+ L GI IGD+ YE
Sbjct: 446 VQDRFLRVQFVEE-----------SELVRLGKTKYNNVKVWKRVERALSQGIRIGDRQYE 494
Query: 479 FLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLV 538
FLAF +SQLR +S + F D +S ED+R WMG F+ I+ V+K AAR+GQ FS+++
Sbjct: 495 FLAFGSSQLRQSSAYFFCPTDHLSCEDIRAWMGQFDHIKCVAKYAARLGQCFSTTRDIKG 554
Query: 539 VPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLS--HTPSAFQIRYGGY 596
+ V D++ I D++ N CF+DG+G IS ++ + ++ L P+AFQ R GG
Sbjct: 555 IWVPDIKYIDDIQ----RNGQCFTDGVGLISKFLSQLIMEEMTLDIFDKPTAFQFRMGGC 610
Query: 597 KGVIAV-DRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDE 655
KGV+AV + ++ +R+S KF+S + L + + + LNR+ I++L +LGV+ +
Sbjct: 611 KGVLAVWPQAQGMEVHIRKSQEKFKSNFQALEIVRCAARSTATLNRQTITILESLGVRKK 670
Query: 656 VFEAMQQQQLILLGKMLINREAALDVLQK-LNGVDSKNILVKMLLQGYEP-NVEPYLSMM 713
+F + ++Q+ + A+ +L K ++ S +L ++L G++ N++ ++
Sbjct: 671 IFMELLKEQISWYENATKDTSEAIKLLTKFVDENQSSLVLAELLKAGFKTDNIQESFTLN 730
Query: 714 LLSHHEN-QLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSF 772
+ + + LK + RI+VPK ++GC DE+G L + + + Q F
Sbjct: 731 IFNLWLSWSFRLLKEKTRIHVPKSAFVLGCVDESGSLRGHSTETEGSSDQLNEKQLPQIF 790
Query: 773 FHRVD----DKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGER 828
D KT+ ++GK +V +NP LHPGD+RV++AV KL + D I+FP KG+R
Sbjct: 791 LQLTDPSHEGKTNTIQGKCIVGRNPSLHPGDIRVVQAVNNPKL--RHLKDVIVFPSKGDR 848
Query: 829 PHPNECSGGDLDGDIFFISWDNDLIPCE-TEPPMDYTGRRSRIMDHDVTLEEIHKFFVDY 887
P P SGGDLDGD FFI WD+ LIP E PMDY R +D DVT++++ +FFV+Y
Sbjct: 849 PVPAMLSGGDLDGDDFFIIWDDRLIPEEWNHKPMDYEAPSPRQLDRDVTVDDLREFFVNY 908
Query: 888 MINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEF 947
M ND LG I+ AHL AD K S CL LA LHS AVD+AKTG PAE ++P+ +
Sbjct: 909 MKNDNLGLIAVAHLAFADMYGPK--SQICLRLAELHSQAVDYAKTGEPAEFGYKMQPERW 966
Query: 948 PDFMEREDKPRYISFGVLGKLYRATLDSIMQIRS--NAIWSEKIAEASYDHDLEVDGFEA 1005
P FME+ K Y S LG LY Q R + E+I E Y+ D ++
Sbjct: 967 PHFMEK--KSTYRSKKALGALYDEVAKHTFQFRPEWGHSFDERILE-RYEFD------KS 1017
Query: 1006 FLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLS 1065
L A K Y+ + LM Y TE E+ TG + + S + + +R D+ +
Sbjct: 1018 TLTAAREIKAQYDSAIRRLMVQYHVETEYELYTGWVMSNTS-ISSNYKRQEDLGLEFDVV 1076
Query: 1066 AKNLQNEAKEWFGSSCKENEHPQL---ASAWYHVT---------------------YSPS 1101
+ + + G S E PQL +A Y VT PS
Sbjct: 1077 KQRFREQCCNVAGGS----EAPQLDKFVAAMYKVTEEQVNKARNRGDDEPVSHQNEADPS 1132
Query: 1102 -YCKERMALLSFPWIVGDILLNI 1123
K + L+SFPWI +++ +
Sbjct: 1133 EELKPNVPLISFPWIFHWVMIRL 1155
>gi|121704872|ref|XP_001270699.1| RNA-directed RNA polymerase (Sad-1), putative [Aspergillus clavatus
NRRL 1]
gi|119398845|gb|EAW09273.1| RNA-directed RNA polymerase (Sad-1), putative [Aspergillus clavatus
NRRL 1]
Length = 1428
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 279/862 (32%), Positives = 440/862 (51%), Gaps = 78/862 (9%)
Query: 299 NLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSF 358
+L V +QL + + +S LSGL AL +L+ + K + ++P+
Sbjct: 416 HLPFPVRYQLEVCISHNYLSEFTMTRGFAIKLSGLGEAEALRLLEHVATKKEVFHNPMKI 475
Query: 359 VKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCY--RALVTPMKIYCLGPELETSNYVVKNF 416
+ V G IP CY A +TP IY P ++ SN V++++
Sbjct: 476 FDLKF-VKGVTHAKIP-----------SYCCYMRSARITPTTIYYNTPSVDISNRVIRHY 523
Query: 417 AKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKH 476
++A F+RV F +E + + ++ ++++RI L +GIV+GD+
Sbjct: 524 IEFADRFLRVRFTDEKLFGRINSTMDDTMD----------EVFTRIKRALANGIVVGDRR 573
Query: 477 YEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQT 536
YEFLAF SQ R + + FA ++A ++R WMG FN IR+V+K AAR+GQ FS+++
Sbjct: 574 YEFLAFGNSQFREHGAYFFAPLPNLTAANIRAWMGTFNDIRNVAKHAARLGQCFSTTRAI 633
Query: 537 LVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQ----KCGLSHTPSAFQIR 592
PVQ + I DV N Y FSDG+G+IS A+ VA K + PSAFQ R
Sbjct: 634 SGCPVQ-IHKIDDVV----RNGYTFSDGVGRISRFLAQMVASELKIKTPIDEPPSAFQFR 688
Query: 593 YGGYKGVIAVDRNSFR-KLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLG 651
GG KG++ V + R ++ +R+S KF + + L + +WS+ LNR++I +LS+LG
Sbjct: 689 LGGCKGMLTVSPEAQRHEVHIRKSQYKFAAAHNGLEIIRWSQFSMATLNRQLIIVLSSLG 748
Query: 652 VKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILV-KMLLQGYEPNVEPYL 710
+ D+VF Q L L + + + A+ L+K + + V +M+L G+ EP++
Sbjct: 749 IPDQVFHEKLQAMLRSLNEAMESDSQAIYWLKKYVDPNQMTLTVSQMVLDGFRRTQEPFV 808
Query: 711 SMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILN--YGQVFVRVTMTREELESK 768
+ +L L LK + +I + KG L+GC DETGIL + V + ++L S
Sbjct: 809 TSVLRLWRAWHLKYLKEKAKIAIDKGANLLGCMDETGILKGYFENVPAKDAPREKKLTSL 868
Query: 769 DQSF---FHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQK 825
+ F H K I++G ++ +NP LHPGD+RV+ AV +L D ++FPQ
Sbjct: 869 PEVFVQILHPESGKYQIIEGVCILARNPSLHPGDIRVVRAVNVPELSH--LKDVVVFPQT 926
Query: 826 GERPHPNECSGGDLDGDIFFISWDNDLIPCE-TEPPMDYTGRRSRIMDHDVTLEEIHKFF 884
G+R P+ CSGGDLDGD + + WD DLIP + PM YT +++ ++ DVT++ I FF
Sbjct: 927 GDRDVPSMCSGGDLDGDDYLVIWDQDLIPKDWFRIPMKYTSDKAQDLNQDVTVDHITSFF 986
Query: 885 VDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKP 944
V YM ND L I+ AHL ADR KC+ LA LHS AVD+ KTG PA M +L+P
Sbjct: 987 VIYMKNDFLPRIAHAHLAWADRLEYGVNEGKCIRLAQLHSDAVDYNKTGRPANMTRSLQP 1046
Query: 945 KEFPDFMEREDKPR---YISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVD 1001
K +P FME++ KP+ Y S +LG+LY A + E+I + L+V
Sbjct: 1047 KMWPHFMEKKHKPKERIYRSGKILGQLYDAVERVDFVPSLEMPFDERILKCR----LQVS 1102
Query: 1002 GFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDR 1061
+ + A K Y+ M+ +M + TE E+ + + + A+ + +D + + ++
Sbjct: 1103 --DDLMQTARDLKADYDAAMHRIMAQHEIRTEFEVWSTFVLSHAN-MSKDYKFHEEL-GM 1158
Query: 1062 ILLSAKNL-QNEAKEWFGSSCKENEHPQLASAWYHVT----------------------Y 1098
+ LS + + + + E G E P LA A Y VT +
Sbjct: 1159 LSLSLRGIYRKKCYEKVGGRSFELLAP-LAVAMYRVTHEEMTTALQKYRAENPHDEKLFH 1217
Query: 1099 SPSYCKERMALLSFPWIVGDIL 1120
P+ +++ +SFPW++ +IL
Sbjct: 1218 KPTPKIDQLPFISFPWVLQNIL 1239
>gi|86196450|gb|EAQ71088.1| hypothetical protein MGCH7_ch7g495 [Magnaporthe oryzae 70-15]
Length = 1952
Score = 394 bits (1013), Expect = e-106, Method: Compositional matrix adjust.
Identities = 257/755 (34%), Positives = 406/755 (53%), Gaps = 40/755 (5%)
Query: 299 NLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSF 358
L+ EV +QL + + ++ ++ E ++ LS + A ++L+ + Y+P+
Sbjct: 917 QLTWEVRYQLEACISHRMLAEPNITLEFLEKLSEMRPTKARIMLEYVVDRNVKLYNPMQL 976
Query: 359 VKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAK 418
K + P + + L + M+ + VTP +Y P +ET+N V++++ +
Sbjct: 977 FKDE-----GASTYWPDITPEELPQYCTMT-RKVTVTPSTMYLSSPMVETTNRVLRHYNE 1030
Query: 419 YASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYE 478
+ F+RV F +E LP L G +I+SR+ +L++GI IGD+HY+
Sbjct: 1031 HKDRFLRVQFTDE----LPTGRLHAPNDLGA-----DDEIFSRVYRVLKNGIHIGDRHYK 1081
Query: 479 FLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLV 538
FLAF +SQ+R NS + F +V+ + +R WMG F+ IR+V K AAR+GQ FS+++
Sbjct: 1082 FLAFGSSQMRENSTYFFCDAGDVTCDSIRAWMGRFSHIRNVGKYAARLGQCFSTTRSIDR 1141
Query: 539 VPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKG 598
V + ++ IPD+E N YCF+DG+GKIS +A +++ L + PSAFQ R GG KG
Sbjct: 1142 VAMPWIKTIPDIE----KNGYCFTDGVGKISSLWAVVISENLKLDYIPSAFQFRMGGCKG 1197
Query: 599 VIAV-DRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVF 657
V+ V + +++ +R S LKFE+ + L V + S LNR+ IS+L++LGVK+EVF
Sbjct: 1198 VLVVWEDVKGQEIHIRPSQLKFETDHSRLEVIRCSHFSVASLNRQTISVLTSLGVKNEVF 1257
Query: 658 EAMQQQQLILLGKMLINREAALDVL-QKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLS 716
E+M +QL + + + AA+ +L Q ++ N L +++ G+ + EP++ ML
Sbjct: 1258 ESMLAEQLAKYNRAMEDATAAMTLLTQYVDENQMTNTLARLVKAGFMESHEPFVCTMLRL 1317
Query: 717 HHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMT---REELES--KDQS 771
+ LK + R+ V KG ++GC DET L +G F + + R L K
Sbjct: 1318 WRTWSVKTLKEKARLVVEKGAFVLGCVDETKTL-HGH-FTHIPASPNQRPRLNGNMKLPE 1375
Query: 772 FFHRVDDKTS----IVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGE 827
F +V D S ++ G LV +NP LHPGD+RV++A+ +L + D ++F Q G+
Sbjct: 1376 IFLQVPDGPSRDYKVITGLCLVGRNPSLHPGDIRVVQAIDVPQL--RHIRDVVVFAQTGD 1433
Query: 828 RPHPNECSGGDLDGDIFFISWDNDLIPCETE---PPMDYTGRRSRIMDHDVTLEEIHKFF 884
R P CSGGDLDGD FF+ WD L+P ++ P Y +R +D +VT +++ +FF
Sbjct: 1434 RDIPGMCSGGDLDGDDFFVLWDERLLPLPSQRNYKPASYHPPPARELDREVTADDLCQFF 1493
Query: 885 VDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKP 944
V YM N +L I+ AHL AD+ A+ KCL LA LHS+AVD+ KTG PA + L P
Sbjct: 1494 VTYMKNFSLPRIAHAHLAQADK--YGAKDEKCLELAYLHSLAVDYPKTGVPAAIRPRLMP 1551
Query: 945 KEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFE 1004
EFP FME+ + RY S +LGKLY + KI + D
Sbjct: 1552 NEFPHFMEKA-RGRYHSRKILGKLYDQVKPVNFHPAYEMPFDVKILSLYGELSQHGDLGP 1610
Query: 1005 AFLGVAESHKEMYEEEMNALMNYYGASTEDEILTG 1039
L A K +Y++ + +M + +TE E+ +
Sbjct: 1611 KLLREARKLKTLYDQSIMRIMGQHEIATEFEVFSA 1645
>gi|389646751|ref|XP_003721007.1| RNA-dependent RNA polymerase 1 [Magnaporthe oryzae 70-15]
gi|351638399|gb|EHA46264.1| RNA-dependent RNA polymerase 1 [Magnaporthe oryzae 70-15]
Length = 1407
Score = 394 bits (1013), Expect = e-106, Method: Compositional matrix adjust.
Identities = 255/753 (33%), Positives = 404/753 (53%), Gaps = 36/753 (4%)
Query: 299 NLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSF 358
L+ EV +QL + + ++ ++ E ++ LS + A ++L+ + Y+P+
Sbjct: 372 QLTWEVRYQLEACISHRMLAEPNITLEFLEKLSEMRPTKARIMLEYVVDRNVKLYNPMQL 431
Query: 359 VKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAK 418
K + P + + L + M+ + VTP +Y P +ET+N V++++ +
Sbjct: 432 FKDE-----GASTYWPDITPEELPQYCTMT-RKVTVTPSTMYLSSPMVETTNRVLRHYNE 485
Query: 419 YASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYE 478
+ F+RV F +E LP L G +I+SR+ +L++GI IGD+HY+
Sbjct: 486 HKDRFLRVQFTDE----LPTGRLHAPNDLGA-----DDEIFSRVYRVLKNGIHIGDRHYK 536
Query: 479 FLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLV 538
FLAF +SQ+R NS + F +V+ + +R WMG F+ IR+V K AAR+GQ FS+++
Sbjct: 537 FLAFGSSQMRENSTYFFCDAGDVTCDSIRAWMGRFSHIRNVGKYAARLGQCFSTTRSIDR 596
Query: 539 VPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKG 598
V + ++ IPD+E N YCF+DG+GKIS +A +++ L + PSAFQ R GG KG
Sbjct: 597 VAMPWIKTIPDIE----KNGYCFTDGVGKISSLWAVVISENLKLDYIPSAFQFRMGGCKG 652
Query: 599 VIAV-DRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVF 657
V+ V + +++ +R S LKFE+ + L V + S LNR+ IS+L++LGVK+EVF
Sbjct: 653 VLVVWEDVKGQEIHIRPSQLKFETDHSRLEVIRCSHFSVASLNRQTISVLTSLGVKNEVF 712
Query: 658 EAMQQQQLILLGKMLINREAALDVL-QKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLS 716
E+M +QL + + + AA+ +L Q ++ N L +++ G+ + EP++ ML
Sbjct: 713 ESMLAEQLAKYNRAMEDATAAMTLLTQYVDENQMTNTLARLVKAGFMESHEPFVCTMLRL 772
Query: 717 HHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMT-REELES--KDQSFF 773
+ LK + R+ V KG ++GC DET L+ + + R L K F
Sbjct: 773 WRTWSVKTLKEKARLVVEKGAFVLGCVDETKTLHGHFTHIPASPNQRPRLNGNMKLPEIF 832
Query: 774 HRVDDKTS----IVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERP 829
+V D S ++ G LV +NP LHPGD+RV++A+ +L + D ++F Q G+R
Sbjct: 833 LQVPDGPSRDYKVITGLCLVGRNPSLHPGDIRVVQAIDVPQL--RHIRDVVVFAQTGDRD 890
Query: 830 HPNECSGGDLDGDIFFISWDNDLIPCETE---PPMDYTGRRSRIMDHDVTLEEIHKFFVD 886
P CSGGDLDGD FF+ WD L+P ++ P Y +R +D +VT +++ +FFV
Sbjct: 891 IPGMCSGGDLDGDDFFVLWDERLLPLPSQRNYKPASYHPPPARELDREVTADDLCQFFVT 950
Query: 887 YMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKE 946
YM N +L I+ AHL AD+ A+ KCL LA LHS+AVD+ KTG PA + L P E
Sbjct: 951 YMKNFSLPRIAHAHLAQADK--YGAKDEKCLELAYLHSLAVDYPKTGVPAAIRPRLMPNE 1008
Query: 947 FPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAF 1006
FP FME+ + RY S +LGKLY + KI + D
Sbjct: 1009 FPHFMEKA-RGRYHSRKILGKLYDQVKPVNFHPAYEMPFDVKILSLYGELSQHGDLGPKL 1067
Query: 1007 LGVAESHKEMYEEEMNALMNYYGASTEDEILTG 1039
L A K +Y++ + +M + +TE E+ +
Sbjct: 1068 LREARKLKTLYDQSIMRIMGQHEIATEFEVFSA 1100
>gi|440466934|gb|ELQ36175.1| RNA-dependent RNA polymerase 1 [Magnaporthe oryzae Y34]
gi|440478755|gb|ELQ59556.1| RNA-dependent RNA polymerase 1 [Magnaporthe oryzae P131]
Length = 1977
Score = 394 bits (1013), Expect = e-106, Method: Compositional matrix adjust.
Identities = 257/755 (34%), Positives = 406/755 (53%), Gaps = 40/755 (5%)
Query: 299 NLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSF 358
L+ EV +QL + + ++ ++ E ++ LS + A ++L+ + Y+P+
Sbjct: 942 QLTWEVRYQLEACISHRMLAEPNITLEFLEKLSEMRPTKARIMLEYVVDRNVKLYNPMQL 1001
Query: 359 VKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAK 418
K + P + + L + M+ + VTP +Y P +ET+N V++++ +
Sbjct: 1002 FKDE-----GASTYWPDITPEELPQYCTMT-RKVTVTPSTMYLSSPMVETTNRVLRHYNE 1055
Query: 419 YASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYE 478
+ F+RV F +E LP L G +I+SR+ +L++GI IGD+HY+
Sbjct: 1056 HKDRFLRVQFTDE----LPTGRLHAPNDLGA-----DDEIFSRVYRVLKNGIHIGDRHYK 1106
Query: 479 FLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLV 538
FLAF +SQ+R NS + F +V+ + +R WMG F+ IR+V K AAR+GQ FS+++
Sbjct: 1107 FLAFGSSQMRENSTYFFCDAGDVTCDSIRAWMGRFSHIRNVGKYAARLGQCFSTTRSIDR 1166
Query: 539 VPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKG 598
V + ++ IPD+E N YCF+DG+GKIS +A +++ L + PSAFQ R GG KG
Sbjct: 1167 VAMPWIKTIPDIE----KNGYCFTDGVGKISSLWAVVISENLKLDYIPSAFQFRMGGCKG 1222
Query: 599 VIAV-DRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVF 657
V+ V + +++ +R S LKFE+ + L V + S LNR+ IS+L++LGVK+EVF
Sbjct: 1223 VLVVWEDVKGQEIHIRPSQLKFETDHSRLEVIRCSHFSVASLNRQTISVLTSLGVKNEVF 1282
Query: 658 EAMQQQQLILLGKMLINREAALDVL-QKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLS 716
E+M +QL + + + AA+ +L Q ++ N L +++ G+ + EP++ ML
Sbjct: 1283 ESMLAEQLAKYNRAMEDATAAMTLLTQYVDENQMTNTLARLVKAGFMESHEPFVCTMLRL 1342
Query: 717 HHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMT---REELES--KDQS 771
+ LK + R+ V KG ++GC DET L +G F + + R L K
Sbjct: 1343 WRTWSVKTLKEKARLVVEKGAFVLGCVDETKTL-HGH-FTHIPASPNQRPRLNGNMKLPE 1400
Query: 772 FFHRVDDKTS----IVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGE 827
F +V D S ++ G LV +NP LHPGD+RV++A+ +L + D ++F Q G+
Sbjct: 1401 IFLQVPDGPSRDYKVITGLCLVGRNPSLHPGDIRVVQAIDVPQL--RHIRDVVVFAQTGD 1458
Query: 828 RPHPNECSGGDLDGDIFFISWDNDLIPCETE---PPMDYTGRRSRIMDHDVTLEEIHKFF 884
R P CSGGDLDGD FF+ WD L+P ++ P Y +R +D +VT +++ +FF
Sbjct: 1459 RDIPGMCSGGDLDGDDFFVLWDERLLPLPSQRNYKPASYHPPPARELDREVTADDLCQFF 1518
Query: 885 VDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKP 944
V YM N +L I+ AHL AD+ A+ KCL LA LHS+AVD+ KTG PA + L P
Sbjct: 1519 VTYMKNFSLPRIAHAHLAQADK--YGAKDEKCLELAYLHSLAVDYPKTGVPAAIRPRLMP 1576
Query: 945 KEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFE 1004
EFP FME+ + RY S +LGKLY + KI + D
Sbjct: 1577 NEFPHFMEKA-RGRYHSRKILGKLYDQVKPVNFHPAYEMPFDVKILSLYGELSQHGDLGP 1635
Query: 1005 AFLGVAESHKEMYEEEMNALMNYYGASTEDEILTG 1039
L A K +Y++ + +M + +TE E+ +
Sbjct: 1636 KLLREARKLKTLYDQSIMRIMGQHEIATEFEVFSA 1670
>gi|414877742|tpg|DAA54873.1| TPA: hypothetical protein ZEAMMB73_768916 [Zea mays]
Length = 937
Score = 393 bits (1009), Expect = e-106, Method: Compositional matrix adjust.
Identities = 261/749 (34%), Positives = 389/749 (51%), Gaps = 68/749 (9%)
Query: 162 CCFKVEILFEDVLETVGFSLDEGATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHIC 221
C K++ DV E F LD +L +L P + + + + P D
Sbjct: 202 CDVKLQFPVRDVAEVRVFRLD-----CSLLIRLSAAPLVCYRTADDDIHVSVPFDLLDDD 256
Query: 222 KEDFDFFWVRTTDFSVTKSIGCSTSF-------FWEIKNGLLASDISNIFPFYKEDKTDL 274
W+RTTD + + +IG ++ FW L Y D+
Sbjct: 257 DP-----WIRTTDITPSGAIGRCGAYRITFSPRFWPKMERALT---------YMRDRRVA 302
Query: 275 ILEEGEEFCTTSEIVPLVKCRPGFN---------------LSHEVLFQLNSLVHNQKVSL 319
IL+ + + V+ P F L VLF +N+LVH +S
Sbjct: 303 ILDCVGGWGARRGLT--VRDEPEFGERMQDLFFCVQHAEGLKFPVLFLVNALVHKGVISQ 360
Query: 320 VAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSFVKTQLHVLGRNCKSIPLSSHK 379
E +L + + L++ K +D +K + R K +
Sbjct: 361 HHLTPEFFGLLQRKEDDVNVAALREFWGDKFPVFDACGRLKNLQDRVARYLKHL----RN 416
Query: 380 RLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPAN 439
++ D N R ++TP K YC+ PE+E SN V++++++ + F+RVTF++E L +N
Sbjct: 417 KIGDVN-SEVRRLVITPTKAYCMPPEVERSNRVIRHYSEVSDRFLRVTFMDERMQMLNSN 475
Query: 440 ALSTS---IQRGIFSKPY--RTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWM 494
L+ S I + + S + +T +Y R+ T L +G + + Y FLAFS++QLR+ S W
Sbjct: 476 VLNFSAAQIVKDLMSNSFLHKTTVYKRVKTFLTEGFHMCGRKYSFLAFSSNQLRDRSAWF 535
Query: 495 FASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDV-EMIPDVEVT 553
FA + + E +R WMG F ++V+K AARMGQ FSS+ T+V+ +V E + +VE
Sbjct: 536 FAEDRTTTVETIRKWMGRFTS-KNVAKHAARMGQCFSSTYATVVLQPHEVNECLDEVE-- 592
Query: 554 SDGNTYCFSDGIGKISLSFARQVAQKCGLS-HTPSAFQIRYGGYKGVIAV--DRNSFRKL 610
N Y FSDGIGKI+ A +VAQK L+ + PSA+QIRY G+KGVI+V +N +L
Sbjct: 593 --HNGYIFSDGIGKITCDLALEVAQKLQLTDNPPSAYQIRYAGFKGVISVWEGKNDGIRL 650
Query: 611 SLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGK 670
SLR SM KFES + +L V W++ P FLNR+II+LLS+L V D +F MQ+ L L
Sbjct: 651 SLRPSMHKFESNHTVLEVVSWTKFQPGFLNRQIITLLSSLNVPDAIFAQMQEAMLSNLNN 710
Query: 671 MLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCR 730
+L + + A D++ + + ML G P EP+L MLL+ +QL L + R
Sbjct: 711 ILSDSDVAFDIVTA-SCAEQGTTAALMLSAGISPGTEPHLKAMLLAIRSSQLLGLLEKTR 769
Query: 731 IYVPKGRLLIGCFDETGILNYGQVFVRVTM-TREELESKDQSFFHRVDDKTSIVKGKVLV 789
I+VPKGR L+GC DE GIL GQ F+R + + K S + + G +++
Sbjct: 770 IFVPKGRWLMGCLDELGILEQGQCFIRASSPSLNNCLVKYGSRLSAANTNAETILGTIVM 829
Query: 790 TKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWD 849
KNPCLHPGDVR+LEAV +L VDC++FP+KGERPH NE SG DLDGD++F++WD
Sbjct: 830 AKNPCLHPGDVRILEAVDVPELHH--LVDCLVFPKKGERPHANEASGSDLDGDLYFVTWD 887
Query: 850 NDLIPCETEP--PMDYTGRRSRIMDHDVT 876
+LIP + PMDY+ ++ + V+
Sbjct: 888 ENLIPPGKKSWNPMDYSPAEAKQLPRAVS 916
>gi|327305981|ref|XP_003237682.1| RNA-directed RNA polymerase [Trichophyton rubrum CBS 118892]
gi|326460680|gb|EGD86133.1| RNA-directed RNA polymerase [Trichophyton rubrum CBS 118892]
Length = 1604
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 272/883 (30%), Positives = 448/883 (50%), Gaps = 107/883 (12%)
Query: 299 NLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSF 358
++S+ V +QL + + +S D + + L L +L+ + + K++ +DP+
Sbjct: 535 HISYAVRYQLEVCISHGFLSEYTIDKDFAKKLESLGERDGKDLLEYVAQEKTVYHDPMEI 594
Query: 359 VKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCY--RALVTPMKIYCLGPELETSNYVVKNF 416
Q G + IP CY A VTP IY P ++TSN V++++
Sbjct: 595 FNIQF-FSGVTNRRIP-----------KYCCYMRSATVTPSTIYFNTPTVDTSNRVIRHY 642
Query: 417 AKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRT---KIYSRILTILQDGIVIG 473
+YA F+RV F +E + G + Y ++++R+ + +GI +G
Sbjct: 643 IEYADRFLRVRFTDEKYE-------------GRINSTYNNCMDEVFTRVKRTMTNGITVG 689
Query: 474 DKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSS 533
D+HYEFLAF SQ R + + FAS ++A ++R WMG F+ I+ V+K AAR+GQ FS++
Sbjct: 690 DRHYEFLAFGNSQFREHGAYFFASLPNLTAANIRAWMGHFSDIKIVAKHAARLGQCFSTT 749
Query: 534 KQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLS----HTPSAF 589
+ PV V I +VE N Y FSDG+G+IS A+ + + L PS F
Sbjct: 750 RAVTGCPVT-VRTIDEVE----RNGYIFSDGVGRISKFLAQMIMTEFKLQTPSEEPPSVF 804
Query: 590 QIRYGGYKGVIAVDRNSFRK-LSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLS 648
Q R GG KG++ V + R+ + +R+S KF + + L + +WS+ LNR++I +LS
Sbjct: 805 QFRLGGCKGILTVSPEAQRREVHIRKSQYKFAAIHNGLEIIRWSQFAAAHLNRQLIVVLS 864
Query: 649 TLGVKDEVFEAMQQQQLIL--LGKMLINREAALDVLQKLNGVDSKNIL-VKMLLQGYEPN 705
LGV DE+F +Q+ +L+L + + + + A+ +LQK + +L +M+ G++ +
Sbjct: 865 ALGVSDEIF--IQKLRLMLEDMEQAMTSETKAMSMLQKRVDPNQMTLLPAQMVHDGFQGS 922
Query: 706 VEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILN--YGQVFVRVTMTRE 763
+P++ +L Q+ LK + ++++ +G L GC DET L Y + + T E
Sbjct: 923 CDPFVKSLLELWRAWQIKYLKEKAKVFIDQGACLFGCLDETATLKGYYEKKRPSIEATYE 982
Query: 764 E-LESKDQSFFHRVDD----KTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVD 818
E LE + F D+ K +++G ++ +NP LHPGD+RV+ AV L D
Sbjct: 983 ERLEYLPEIFVQVFDNEEEKKYRVIEGPCILARNPSLHPGDIRVVRAVNVPALHH--LKD 1040
Query: 819 CIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETE---PPMDYTGRRSRIMDHDV 875
I+FPQ G+R P+ CSGGDLDGD + + WD DL+P + PMDYT ++ ++ DV
Sbjct: 1041 VIVFPQTGDRDVPSTCSGGDLDGDDYIVIWDQDLVPLPKDWFREPMDYTASNAQSLNRDV 1100
Query: 876 TLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAP 935
T+ +I FFV YM ND L I+ AHL AD D +C+ LA LHS AVD+ K+G P
Sbjct: 1101 TVNDITSFFVTYMKNDRLPQIAHAHLAFADYLEDGVNDERCIQLAQLHSAAVDYNKSGIP 1160
Query: 936 AEMPLALKPKEFPDFMEREDKPR---YISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEA 992
A M L P+ +P FME++ KP+ Y S +LG++Y + + A + E+I
Sbjct: 1161 ANMTRDLVPRRWPHFMEKKYKPKEAQYQSKKILGQIYDIVERVEFRPKLEAPFDERILNC 1220
Query: 993 SYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDN 1052
D+ V + + A+ K +Y+ +M +M + TE E+ + + A+ + +D
Sbjct: 1221 ----DISVS--QDMVLAAKKLKALYDADMRRIMAQHEIKTEFEVWSTFVLGHAN-MSKDY 1273
Query: 1053 RRYGDMKDRILLSAKNLQNEAKEWFGSSCKEN------EH-PQLASAWYHVT---YSPSY 1102
+ + ++ + + +E F S C++ +H LA A Y VT + +
Sbjct: 1274 KFHEEL--------GQISSALRERFLSMCQDEAGGRDFQHLAPLAVAMYRVTAQEVADAL 1325
Query: 1103 CKE----------------------RMALLSFPWIVGDILLNI 1123
KE ++ L+SFPW++ +L I
Sbjct: 1326 GKEESSKGHDVGNAIKKDYKHLRNDQIPLISFPWVLQPVLGKI 1368
>gi|315047102|ref|XP_003172926.1| RNA-dependent RNA polymerase 1 [Arthroderma gypseum CBS 118893]
gi|311343312|gb|EFR02515.1| RNA-dependent RNA polymerase 1 [Arthroderma gypseum CBS 118893]
Length = 1455
Score = 391 bits (1005), Expect = e-105, Method: Compositional matrix adjust.
Identities = 270/880 (30%), Positives = 435/880 (49%), Gaps = 101/880 (11%)
Query: 299 NLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSF 358
++S+ V +QL + + +S A D E + L L A +L+ + K + +DP+
Sbjct: 395 HISYVVRYQLEVCISHGLLSEYAIDKEFAKKLESLGERDAKDLLEYVAHEKVVYHDPMKI 454
Query: 359 VKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCY--RALVTPMKIYCLGPELETSNYVVKNF 416
Q G + IP CY A VTP IY P ++TSN V++++
Sbjct: 455 FDIQF-FSGVTNRRIP-----------KYCCYMRSATVTPSTIYFHTPTVDTSNRVIRHY 502
Query: 417 AKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRT---KIYSRILTILQDGIVIG 473
+YA F+RV F +E + G + Y ++++R+ + +G+++G
Sbjct: 503 IEYADRFLRVRFTDEKY-------------EGRINSTYNNCMDEVFTRVKRTMTNGVIVG 549
Query: 474 DKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSS 533
D+HYEFLAF SQ R + + FAS ++A ++R WMG F+ I+ V+K AAR+GQ FSS+
Sbjct: 550 DRHYEFLAFGNSQFREHGAYFFASLPNLTASNIRAWMGHFSDIKIVAKHAARLGQCFSST 609
Query: 534 KQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGL----SHTPSAF 589
K PV + I ++E N Y FSDG+G+IS A+ + + L PS F
Sbjct: 610 KAVTGCPVT-IREIDEIE----RNGYTFSDGVGRISKFLAQMIMTEFKLKTPSEEPPSVF 664
Query: 590 QIRYGGYKGVIAVDRNSFRK-LSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLS 648
Q R GG KG++ V + R+ + +++S KF + + L + +WS+ +LNR++I +LS
Sbjct: 665 QFRLGGCKGILTVSPEAQRREVHIKKSQYKFAAVHNGLEIIRWSQFAAAYLNRQLIVVLS 724
Query: 649 TLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKN---ILVKMLLQGYEPN 705
LGV DE+F + L + + + + A+ +LQK VD +L +M+ G++
Sbjct: 725 ALGVTDEIFIKKLRLMLEDMEQAMTSETKAMSLLQK--QVDPNQMTLLLAQMVHDGFQGT 782
Query: 706 VEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILN--YGQVFVRVTMTRE 763
+P+++ +L Q+ LK + +I + G L GC DET L + + + T E
Sbjct: 783 SDPFVTSLLELWRAWQIKYLKEKAKICIDGGACLFGCLDETATLKGYHEKTRPSIDATYE 842
Query: 764 ELESKDQSFFHRVDDKTS-----IVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVD 818
E F +V D + I++G ++ +NP LHPGD+RV+ AV L D
Sbjct: 843 ERLGYLPEIFVQVFDAEAERNYKIIEGPCILARNPSLHPGDIRVVRAVNVPALHH--LKD 900
Query: 819 CIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETE---PPMDYTGRRSRIMDHDV 875
I+F Q G+R P+ CSGGDLDGD + + WD DL+P + PMDYT ++ + DV
Sbjct: 901 VIVFSQTGDRDVPSTCSGGDLDGDDYIVIWDQDLVPLPKDWFRQPMDYTASNAQSLTRDV 960
Query: 876 TLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAP 935
T+ +I FFV YM ND L I+ AHL AD D +C+ LA LHS AVD+ K+G P
Sbjct: 961 TVNDITSFFVTYMKNDRLPQIAHAHLAFADFLEDGVNDKRCVQLAQLHSAAVDYNKSGIP 1020
Query: 936 AEMPLALKPKEFPDFMEREDKPR---YISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEA 992
A M L P+++P FME++ KP+ Y S +LG++Y + + A + E+I
Sbjct: 1021 ANMTRDLVPRKWPHFMEKKYKPKEAQYHSKKILGQIYDIVERVEFRPKLEAPFDERILNC 1080
Query: 993 SYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEI---------------- 1036
D+ V E + A+ K +Y+ +M +M + TE E+
Sbjct: 1081 ----DISVS--EEMVLAAKKLKALYDADMRRIMAQHEIKTEFEVWSTFVLGHANMSKDYK 1134
Query: 1037 -------LTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSCKENEHP-- 1087
++ LR R + D D + L+ + A+E + KE P
Sbjct: 1135 FHEELGQISSALRERFLLMCHDEAGGKDFQHLAPLAVAMYRVTAQEVAEALGKEESSPGH 1194
Query: 1088 ----QLASAWYHVTYSPSYCKERMALLSFPWIVGDILLNI 1123
+ A+ H++ +++ L+SFPW++ +L I
Sbjct: 1195 DVGDAIKKAYKHLS------NDQLPLISFPWVLQPVLGKI 1228
>gi|302505092|ref|XP_003014767.1| hypothetical protein ARB_07328 [Arthroderma benhamiae CBS 112371]
gi|291178073|gb|EFE33864.1| hypothetical protein ARB_07328 [Arthroderma benhamiae CBS 112371]
Length = 1296
Score = 391 bits (1004), Expect = e-105, Method: Compositional matrix adjust.
Identities = 273/883 (30%), Positives = 443/883 (50%), Gaps = 107/883 (12%)
Query: 299 NLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSF 358
++S+ V +QL + + +S D + + L L +L+ + + K++ +DP+
Sbjct: 226 HISYAVRYQLEVCISHGFLSEYTIDKDFAKKLESLGERDGKDLLEYVAQEKTVYHDPMEI 285
Query: 359 VKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCY--RALVTPMKIYCLGPELETSNYVVKNF 416
Q G + IP CY A VTP IY P ++TSN V++++
Sbjct: 286 FNIQF-FSGVTNRRIP-----------KYCCYMRSATVTPSTIYFNTPTVDTSNRVIRHY 333
Query: 417 AKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRT---KIYSRILTILQDGIVIG 473
+YA F+RV F +E + G + Y ++++R+ + +GI +G
Sbjct: 334 IEYADRFLRVRFTDEKYE-------------GRINSTYNNCMDEVFTRVKRTMTNGITVG 380
Query: 474 DKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSS 533
D+HYEFLAF SQ R + + FAS ++A ++R WMG F+ I+ V+K AAR+GQ FS++
Sbjct: 381 DRHYEFLAFGNSQFREHGAYFFASLPNLTAANIRAWMGHFSDIKIVAKHAARLGQCFSTT 440
Query: 534 KQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLS----HTPSAF 589
+ PV V I +VE N Y FSDG+G+IS A+ + + L PS F
Sbjct: 441 RAVTGCPVT-VREIDEVE----RNGYIFSDGVGRISKFLAQMIMTEFKLQTPSEEPPSVF 495
Query: 590 QIRYGGYKGVIAVDRNSFRK-LSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLS 648
Q R GG KG++ V + R+ + +R+S KF + + L + +WS+ LNR++I +LS
Sbjct: 496 QFRLGGCKGILTVSPEAQRREVHIRKSQYKFAAIHNGLEIIRWSQFAAAHLNRQLIVVLS 555
Query: 649 TLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKN---ILVKMLLQGYEPN 705
LGV D +F + L L + + + A+ +LQK VD +L +M+ G++ +
Sbjct: 556 ALGVSDNIFIEKLRLMLEDLEQAMTSETKAMSMLQKR--VDPNQMTLLLAQMVHDGFQGS 613
Query: 706 VEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILN--YGQVFVRVTMTRE 763
+P++ +L Q+ LK + ++++ +G L GC DET L Y + + T E
Sbjct: 614 CDPFVKSLLELWRAWQIKYLKEKAKVFIDQGACLFGCLDETATLKGYYEKKRPSIEATYE 673
Query: 764 E-LESKDQSFFHRVDD----KTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVD 818
E LE + F D+ K +++G ++ +NP LHPGD+RV+ AV L D
Sbjct: 674 ERLEYLPEIFVQVFDNEEEKKYRVIEGPCILARNPSLHPGDIRVVRAVNVPALHH--LKD 731
Query: 819 CIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETE---PPMDYTGRRSRIMDHDV 875
I+FPQ G+R P+ CSGGDLDGD + + WD DL+P + PMDYT ++ + DV
Sbjct: 732 VIVFPQTGDRDVPSTCSGGDLDGDDYIVIWDQDLVPLPKDWFREPMDYTASNAQSLTRDV 791
Query: 876 TLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAP 935
T+ +I FFV YM ND L I+ AHL AD D +C+ LA LHS AVD+ K+G P
Sbjct: 792 TVNDITSFFVTYMKNDRLPQIAHAHLAFADYLEDGVNDERCIQLAQLHSAAVDYNKSGIP 851
Query: 936 AEMPLALKPKEFPDFMEREDKPR---YISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEA 992
A M L P+++P FME++ KP+ Y S +LG++Y + + A + E+I
Sbjct: 852 ANMTRDLVPRKWPHFMEKKYKPKEAQYQSKKILGQIYDIVERVEFRPKLEAPFDERILNC 911
Query: 993 SYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDN 1052
D+ V E + A+ K +Y+ +M +M + TE E+ + + A+ + +D
Sbjct: 912 ----DISVS--EEMVLAAKKLKGLYDADMRRIMAQHEIKTEFEVWSTFVLGHAN-MSKDY 964
Query: 1053 RRYGDMKDRILLSAKNLQNEAKEWFGSSCKEN------EH-PQLASAWYHVT---YSPSY 1102
+ + ++ + + +E F S C++ +H LA A Y VT + +
Sbjct: 965 KFHEEL--------GQISSALRERFLSMCQDEAGGRDFQHLAPLAVAMYRVTAQDVAEAL 1016
Query: 1103 CKE----------------------RMALLSFPWIVGDILLNI 1123
KE ++ L+SFPW++ +L I
Sbjct: 1017 GKEDSSKGHDIGNAIKKEYKHLRNDQIPLISFPWVLQPVLGKI 1059
>gi|146323311|ref|XP_754927.2| RNA-directed RNA polymerase (Sad-1) [Aspergillus fumigatus Af293]
gi|129558353|gb|EAL92889.2| RNA-directed RNA polymerase (Sad-1), putative [Aspergillus fumigatus
Af293]
Length = 1423
Score = 390 bits (1003), Expect = e-105, Method: Compositional matrix adjust.
Identities = 275/863 (31%), Positives = 441/863 (51%), Gaps = 74/863 (8%)
Query: 299 NLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSF 358
+L V +QL + + +S E L L A+ +L+ + + + +DP+
Sbjct: 409 HLPFPVRYQLEVCLSHNYLSEFTMSREFAVKLLNLGESEAVKLLEHVAIKEEVYHDPMKI 468
Query: 359 VKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCY--RALVTPMKIYCLGPELETSNYVVKNF 416
+ G IP CY A +TP IY P ++ SN V++ +
Sbjct: 469 FDLKF-AKGSTRAKIP-----------SYCCYMRSARITPTTIYYNTPSVDISNRVIRYY 516
Query: 417 AKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKH 476
+YA F+RV F +E KL ++++I + ++++RI L +GIVIGD+
Sbjct: 517 IEYADRFLRVRFTDE---KL-LGRINSTIDNTM------DEVFTRIKRALANGIVIGDRR 566
Query: 477 YEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQT 536
YEFLAF SQ R + + FA ++A ++R WMG FN IR+V+K AAR+GQ FS+++
Sbjct: 567 YEFLAFGNSQFREHGAYFFAPLPSLTAANIRAWMGTFNDIRNVAKHAARLGQCFSTTRAI 626
Query: 537 LVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGL----SHTPSAFQIR 592
PVQ + +I DV N Y FSDG+G+IS A+ A + + PSAFQ R
Sbjct: 627 AGCPVQ-IRLIDDVV----RNGYTFSDGVGRISKFLAQMAASELKIRTPSGDPPSAFQFR 681
Query: 593 YGGYKGVIAVDRNSFRK-LSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLG 651
GG KG++ V + R+ + +R+S KF S + L + +WS+ LNR++I +LS+LG
Sbjct: 682 LGGCKGMLTVSPEAQRQEVHIRKSQYKFASVHNGLEIIRWSQYSMATLNRQLIIVLSSLG 741
Query: 652 VKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILV-KMLLQGYEPNVEPYL 710
++D VF + L L + + + AL L+K + ++V +M+L G+ + EP++
Sbjct: 742 IQDSVFHDKLRAMLQSLNESMESDSQALCWLKKYVDPNQMTLVVSQMVLDGFRSSREPFV 801
Query: 711 SMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGIL-NYGQ-VFVRVTMTREELESK 768
+ ++ L LK + +I + KG L+GC DETGIL Y + + + E+L +
Sbjct: 802 TSIMRLWKAWHLKYLKEKAKIVIEKGANLLGCMDETGILRGYSEWIPAKGASDEEKLAAL 861
Query: 769 DQSFF---HRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQK 825
+ F H K +++G ++ +NP LHPGD+RV+ AV +L D ++FPQ
Sbjct: 862 PEIFVQIHHPDTGKCEVIEGVCILARNPSLHPGDIRVVRAVNVPQLSH--LKDVVVFPQT 919
Query: 826 GERPHPNECSGGDLDGDIFFISWDNDLIPCE-TEPPMDYTGRRSRIMDHDVTLEEIHKFF 884
G+R P+ CSGGDLDGD + + WD DL+P + PM YT +++ +D DVT+ I FF
Sbjct: 920 GDRDIPSTCSGGDLDGDDYLVIWDQDLVPEDWFRKPMKYTSDKAQDLDQDVTVNHITSFF 979
Query: 885 VDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKP 944
V YM ND L I+ AHL ADR D KC+ LA LHS AVD+ KTG PA M +L+P
Sbjct: 980 VLYMKNDFLPRIAHAHLAWADRLEDGVNEEKCIRLAQLHSDAVDYNKTGKPANMARSLQP 1039
Query: 945 KEFPDFMEREDKPR---YISFGVLGKLYRAT--LDSIMQIRSNAIWSEKIAEAS------ 993
K +P FME++ KP+ Y S +LG+LY A +D + + + E+I S
Sbjct: 1040 KVWPHFMEKKHKPKEMIYKSNKILGQLYDAVERIDFVPSL--EMPFDERILTCSLGVSDD 1097
Query: 994 ---YDHDLEVDGFEAFLGVAESHKEMYEEEM--------NALMNYYGASTEDEILTGNLR 1042
+ DL+ D A + H+ E E+ + + Y E +++ +LR
Sbjct: 1098 LVQFARDLKADYDAAMHRIMAQHEITTEFEVWSTFVLSHSNMSKDYKFHEELGLISSSLR 1157
Query: 1043 N--RASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSCKENEHPQLASAWYHVTYSP 1100
+ R ++ R ++ + ++ + +E C+ H + + P
Sbjct: 1158 DMYRKKCYEKVGGRSFELLAPLAVAMYRVTHEEMTSALEKCRSKNHSD-----GQLFHKP 1212
Query: 1101 SYCKERMALLSFPWIVGDILLNI 1123
+ +++ +SFPWI+ +IL I
Sbjct: 1213 TPKIDQLPFISFPWILYNILGKI 1235
>gi|159127939|gb|EDP53054.1| RNA-directed RNA polymerase (Sad-1), putative [Aspergillus fumigatus
A1163]
Length = 1423
Score = 390 bits (1003), Expect = e-105, Method: Compositional matrix adjust.
Identities = 275/863 (31%), Positives = 441/863 (51%), Gaps = 74/863 (8%)
Query: 299 NLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSF 358
+L V +QL + + +S E L L A+ +L+ + + + +DP+
Sbjct: 409 HLPFPVRYQLEVCLSHNYLSEFTMSREFAVKLLNLGESEAVKLLEHVAIKEEVYHDPMKI 468
Query: 359 VKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCY--RALVTPMKIYCLGPELETSNYVVKNF 416
+ G IP CY A +TP IY P ++ SN V++ +
Sbjct: 469 FDLKF-AKGSTRAKIP-----------SYCCYMRSARITPTTIYYNTPSVDISNRVIRYY 516
Query: 417 AKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKH 476
+YA F+RV F +E KL ++++I + ++++RI L +GIVIGD+
Sbjct: 517 IEYADRFLRVRFTDE---KL-LGRINSTIDNTM------DEVFTRIKRALANGIVIGDRR 566
Query: 477 YEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQT 536
YEFLAF SQ R + + FA ++A ++R WMG FN IR+V+K AAR+GQ FS+++
Sbjct: 567 YEFLAFGNSQFREHGAYFFAPLPSLTAANIRAWMGTFNDIRNVAKHAARLGQCFSTTRAI 626
Query: 537 LVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGL----SHTPSAFQIR 592
PVQ + +I DV N Y FSDG+G+IS A+ A + + PSAFQ R
Sbjct: 627 AGCPVQ-IRLIDDVV----RNGYTFSDGVGRISKFLAQMAASELKIRTPSGDPPSAFQFR 681
Query: 593 YGGYKGVIAVDRNSFRK-LSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLG 651
GG KG++ V + R+ + +R+S KF S + L + +WS+ LNR++I +LS+LG
Sbjct: 682 LGGCKGMLTVSPEAQRQEVHIRKSQYKFASVHNGLEIIRWSQYSMATLNRQLIIVLSSLG 741
Query: 652 VKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILV-KMLLQGYEPNVEPYL 710
++D VF + L L + + + AL L+K + ++V +M+L G+ + EP++
Sbjct: 742 IQDSVFHDKLRAMLQSLNESMESDSQALCWLKKYVDPNQMTLVVSQMVLDGFRSSREPFV 801
Query: 711 SMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGIL-NYGQ-VFVRVTMTREELESK 768
+ ++ L LK + +I + KG L+GC DETGIL Y + + + E+L +
Sbjct: 802 TSIMRLWKAWHLKYLKEKAKIVIEKGANLLGCMDETGILRGYSEWIPAKGASDEEKLAAL 861
Query: 769 DQSFF---HRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQK 825
+ F H K +++G ++ +NP LHPGD+RV+ AV +L D ++FPQ
Sbjct: 862 PEIFVQIHHPDTGKCEVIEGVCILARNPSLHPGDIRVVRAVNVPQLSH--LKDVVVFPQT 919
Query: 826 GERPHPNECSGGDLDGDIFFISWDNDLIPCE-TEPPMDYTGRRSRIMDHDVTLEEIHKFF 884
G+R P+ CSGGDLDGD + + WD DL+P + PM YT +++ +D DVT+ I FF
Sbjct: 920 GDRDIPSTCSGGDLDGDDYLVIWDQDLVPEDWFRKPMKYTSDKAQDLDQDVTVNHITSFF 979
Query: 885 VDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKP 944
V YM ND L I+ AHL ADR D KC+ LA LHS AVD+ KTG PA M +L+P
Sbjct: 980 VLYMKNDFLPRIAHAHLAWADRLEDGVNEEKCIRLAQLHSDAVDYNKTGKPANMARSLQP 1039
Query: 945 KEFPDFMEREDKPR---YISFGVLGKLYRAT--LDSIMQIRSNAIWSEKIAEAS------ 993
K +P FME++ KP+ Y S +LG+LY A +D + + + E+I S
Sbjct: 1040 KVWPHFMEKKHKPKEMIYKSNKILGQLYDAVERIDFVPSL--EMPFDERILTCSLGVSDD 1097
Query: 994 ---YDHDLEVDGFEAFLGVAESHKEMYEEEM--------NALMNYYGASTEDEILTGNLR 1042
+ DL+ D A + H+ E E+ + + Y E +++ +LR
Sbjct: 1098 LVQFARDLKADYDAAMHRIMAQHEITTEFEVWSTFVLSHSNMSKDYKFHEELGLISSSLR 1157
Query: 1043 N--RASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSCKENEHPQLASAWYHVTYSP 1100
+ R ++ R ++ + ++ + +E C+ H + + P
Sbjct: 1158 DMYRKKCYEKVGGRSFELLAPLAVAMYRVTHEEMTSALEKCRSENHSD-----GQLFHKP 1212
Query: 1101 SYCKERMALLSFPWIVGDILLNI 1123
+ +++ +SFPWI+ +IL I
Sbjct: 1213 TPKIDQLPFISFPWILYNILGKI 1235
>gi|326471540|gb|EGD95549.1| RNA-directed RNA polymerase [Trichophyton tonsurans CBS 112818]
Length = 1605
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 268/882 (30%), Positives = 439/882 (49%), Gaps = 105/882 (11%)
Query: 299 NLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSF 358
++S+ V +QL + + +S D + + L L +L+ + + K++ DP+
Sbjct: 536 HISYAVRYQLEVCISHGFLSEYTIDKDFAKKLESLGERDGKDLLEYVAQEKTVYLDPMEI 595
Query: 359 VKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCY--RALVTPMKIYCLGPELETSNYVVKNF 416
Q G + IP CY A VTP IY P ++TSN V++++
Sbjct: 596 FNIQF-FSGVTNRRIP-----------KYCCYMRSATVTPSTIYFNTPTVDTSNRVIRHY 643
Query: 417 AKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRT---KIYSRILTILQDGIVIG 473
+YA F+RV F +E + G + Y ++++R+ + +GI +G
Sbjct: 644 IEYADKFLRVRFTDEKYE-------------GRINSTYNNCMDEVFTRVKRTMTNGITVG 690
Query: 474 DKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSS 533
D+HYEFLAF SQ R + + FAS ++A ++R WMG F+ I+ V+K AAR+G+ FS++
Sbjct: 691 DRHYEFLAFGNSQFREHGAYFFASLPNLTAANIRAWMGHFSDIKIVAKHAARLGRCFSTT 750
Query: 534 KQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLS----HTPSAF 589
+ PV V I +VE N Y FSDG+G+IS A+ + + L PS F
Sbjct: 751 RAVTGCPVT-VREIDEVE----RNGYIFSDGVGRISKFLAQMIMTEFKLQTPSEEPPSVF 805
Query: 590 QIRYGGYKGVIAVDRNSFRK-LSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLS 648
Q R GG KG++ V + R+ + +R+S KF + + L + +WS+ LNR++I +LS
Sbjct: 806 QFRLGGCKGILTVSPEAQRREVHIRKSQYKFAAIHNGLEIIRWSQFAAAHLNRQLIVVLS 865
Query: 649 TLGVKDEVFEAMQQQQLIL--LGKMLINREAALDVLQKLNGVDSKN---ILVKMLLQGYE 703
LGV DE+F +Q+ +L+L + + + + A+ +LQK VD IL +M+ G++
Sbjct: 866 ALGVSDEIF--IQKLRLMLEDMEQAMTSETKAMSMLQKR--VDPNQMTLILAQMVHDGFQ 921
Query: 704 PNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMT-- 761
+ +P++ +L Q+ LK + ++++ +G L GC DET L R ++
Sbjct: 922 GSCDPFVKSLLELWRAWQIKYLKEKAKVFIDQGACLFGCLDETATLKGYHEKKRPSIEAT 981
Query: 762 -REELESKDQSFFHRVDD----KTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDY 816
E LE + F D+ K +++G ++ +NP LHPGD+RV+ AV L
Sbjct: 982 YEERLEYLPEIFVQVFDNEEEKKYRVIEGPCILARNPSLHPGDIRVVRAVDVPALHH--L 1039
Query: 817 VDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETE---PPMDYTGRRSRIMDH 873
D I+FPQ G+R P+ CSGGDLDGD + + WD DL+P + PMDYT ++ +
Sbjct: 1040 KDVIVFPQTGDRDVPSTCSGGDLDGDDYIVIWDQDLVPLPKDWFREPMDYTASNAQSLTR 1099
Query: 874 DVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTG 933
DVT+ +I FFV YM ND L I+ AHL AD D +C+ LA LHS AVD+ K+G
Sbjct: 1100 DVTVNDITSFFVTYMKNDRLPQIAHAHLAFADYLEDGVNDERCIQLAQLHSAAVDYNKSG 1159
Query: 934 APAEMPLALKPKEFPDFMEREDKPR---YISFGVLGKLYRATLDSIMQIRSNAIWSEKIA 990
PA M L P+++P FME++ KP+ Y S +LG++Y + + A + E+I
Sbjct: 1160 IPANMTRDLVPRKWPHFMEKKYKPKEAQYQSKKILGQIYDIVERVEFRPKLEAPFDERIL 1219
Query: 991 EASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILT------GNLRNR 1044
D+ V E + A+ K +Y+ +M +M + TE E+ + N+
Sbjct: 1220 NC----DISVS--EDMVLAAKKLKALYDADMRRIMAQHEIKTEFEVWSTFVLGHANMSKD 1273
Query: 1045 ASYLQRDNRRYGDMKDRIL------LSAKNLQN--------------EAKEWFGSSCKEN 1084
+ + + ++DR L ++ Q+ E + G N
Sbjct: 1274 YKFHEELGQISSALRDRFLSMCQDEAGGRDFQHLAPLAVAMYRVTAQEVADALGKEESSN 1333
Query: 1085 EHP---QLASAWYHVTYSPSYCKERMALLSFPWIVGDILLNI 1123
H + + H+ +++ L+SFPW++ +L I
Sbjct: 1334 GHDVGNAIKKEYKHLR------NDQIPLISFPWVLQPVLGKI 1369
>gi|302658845|ref|XP_003021121.1| hypothetical protein TRV_04770 [Trichophyton verrucosum HKI 0517]
gi|291185002|gb|EFE40503.1| hypothetical protein TRV_04770 [Trichophyton verrucosum HKI 0517]
Length = 1587
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 272/883 (30%), Positives = 442/883 (50%), Gaps = 107/883 (12%)
Query: 299 NLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSF 358
++S+ V +QL + + +S D + + L L +L+ + + K++ +DP+
Sbjct: 517 HISYAVRYQLEVCISHGFLSEYTIDKDFAKKLESLGERDGKDLLEYVAQEKTVYHDPMEI 576
Query: 359 VKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCY--RALVTPMKIYCLGPELETSNYVVKNF 416
Q G + IP CY A VTP IY P ++TSN V++++
Sbjct: 577 FNIQF-FSGVTNRRIP-----------KYCCYMRSATVTPSTIYFNTPTVDTSNRVIRHY 624
Query: 417 AKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRT---KIYSRILTILQDGIVIG 473
+YA F+RV F +E + G + Y ++++R+ + +GI +G
Sbjct: 625 IEYADRFLRVRFTDEKYE-------------GRINSTYNNCMDEVFTRVKRTMTNGITVG 671
Query: 474 DKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSS 533
D+HYEFLAF SQ R + + FAS ++A ++R WMG F+ I+ +K AAR+GQ FS++
Sbjct: 672 DRHYEFLAFGNSQFREHGAYFFASLPNLTAANIRAWMGHFSDIKIAAKHAARLGQCFSTT 731
Query: 534 KQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLS----HTPSAF 589
+ PV V I +VE N Y FSDG+G+IS A+ + + L PS F
Sbjct: 732 RAVTGCPVT-VREIDEVE----RNGYIFSDGVGRISKFLAQMIMTEFKLQTPSEEPPSVF 786
Query: 590 QIRYGGYKGVIAVDRNSFRK-LSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLS 648
Q R GG KG++ V + R+ + +R+S KF + + L + +WS+ LNR++I +LS
Sbjct: 787 QFRLGGCKGILTVSPEAQRREVHIRKSQYKFAAIHNGLEIIRWSQFAAAHLNRQLIVVLS 846
Query: 649 TLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKN---ILVKMLLQGYEPN 705
LGV D +F + L L + + + A+ +LQK VD +L +M+ G++ +
Sbjct: 847 ALGVSDNIFIEKLRLMLEDLEQAMTSETKAMSMLQKR--VDPNQMTLLLAQMVHDGFQGS 904
Query: 706 VEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILN--YGQVFVRVTMTRE 763
+P++ +L Q+ LK + ++++ +G L GC DET L Y + + T E
Sbjct: 905 CDPFVKSLLELWRAWQIKYLKEKAKVFIDQGACLFGCLDETATLKGYYEKKRPSIEATYE 964
Query: 764 E-LESKDQSFFHRVDD----KTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVD 818
E LE + F D+ K +++G ++ +NP LHPGD+RV+ AV L D
Sbjct: 965 ERLEYLPEIFVQVFDNEEEKKYRVIEGPCILARNPSLHPGDIRVVRAVNVPALHH--LKD 1022
Query: 819 CIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETE---PPMDYTGRRSRIMDHDV 875
I+FPQ G+R P+ CSGGDLDGD + + WD DL+P + PMDYT ++ + DV
Sbjct: 1023 VIVFPQTGDRDVPSTCSGGDLDGDDYIVIWDQDLVPLSKDWFREPMDYTASNAQSLTRDV 1082
Query: 876 TLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAP 935
T+ +I FFV YM ND L I+ AHL AD D +C+ LA LHS AVD+ K+G P
Sbjct: 1083 TVNDITSFFVTYMKNDRLPQIAHAHLAFADYLEDGVNDERCIQLAQLHSAAVDYNKSGIP 1142
Query: 936 AEMPLALKPKEFPDFMEREDKPR---YISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEA 992
A M L P+++P FME++ KP+ Y S +LG++Y + + A + E+I
Sbjct: 1143 ANMTRDLVPRKWPHFMEKKYKPKEAQYQSKKILGQIYDIVERVEFRPKLEAPFDERILNC 1202
Query: 993 SYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDN 1052
D+ V E + A+ K +Y+ +M +M + TE E+ + + A+ + +D
Sbjct: 1203 ----DISVS--EEMVLAAKKLKGLYDADMRRIMAQHEIKTEFEVWSTFVLGHAN-MSKDY 1255
Query: 1053 RRYGDMKDRILLSAKNLQNEAKEWFGSSCKEN------EH-PQLASAWYHVT---YSPSY 1102
+ + ++ + + +E F S C++ +H LA A Y VT + +
Sbjct: 1256 KFHEEL--------GQISSALRERFLSMCQDEAGGRDFQHLAPLAVAMYRVTAQDVAEAL 1307
Query: 1103 CKE----------------------RMALLSFPWIVGDILLNI 1123
KE ++ L+SFPW++ +L I
Sbjct: 1308 GKEDSSKGHDIGNAIKKEYKHLRNDQIPLISFPWVLQPVLGKI 1350
>gi|261204627|ref|XP_002629527.1| RNA-directed RNA polymerase [Ajellomyces dermatitidis SLH14081]
gi|239587312|gb|EEQ69955.1| RNA-directed RNA polymerase [Ajellomyces dermatitidis SLH14081]
Length = 1633
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 278/874 (31%), Positives = 439/874 (50%), Gaps = 94/874 (10%)
Query: 300 LSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSFV 359
L V +QL + ++ ++ + ++ L L + A +L+ + K+I YDP+
Sbjct: 565 LPFSVRYQLEVCMSHRYINEYTIEETFVRRLVQLGEKKAKELLEHVAMNKTIYYDPMGIF 624
Query: 360 KTQLHVLGRNCKSIPL---SSHKRLIDHNVMSCY--RALVTPMKIYCLGPELETSNYVVK 414
+IP +++ R+ H CY A VTP I P ++TSN V +
Sbjct: 625 ------------NIPFPKGATNGRIPGH---CCYIRSADVTPSTICYDIPSVDTSNRVFR 669
Query: 415 NFAKYASDFMRVTFVEEDW--SKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVI 472
++A F+RV F +E + P N+ ++ K+Y+R+L LQ GI I
Sbjct: 670 YHREHADRFLRVRFCDEKYIGKIYPNNSGNSQCME---------KVYARVLRTLQHGITI 720
Query: 473 GDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSS 532
GD+ YEFLAF SQLR + + FAS ++A ++R MG N IR V+K AAR+GQ FS+
Sbjct: 721 GDRRYEFLAFGNSQLREHGAYFFASLPHLTAANIRAQMGDLNNIRVVAKYAARLGQCFST 780
Query: 533 SKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGL----SHTPSA 588
++ PVQ ++ I D+E N Y FSDG+G++S + + G+ PS
Sbjct: 781 TRAVTSCPVQ-IKKIDDIE----RNGYVFSDGVGRLSHFLTQMIQSDLGIKTPSGEPPSV 835
Query: 589 FQIRYGGYKGVIAVDRNSF-RKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLL 647
FQ R GG KG++AV + R++ +RRS KF + + L + ++S LNR++I +L
Sbjct: 836 FQFRLGGCKGILAVSPEARQREVHIRRSQFKFPASHNGLEIIRYSHFSYATLNRQLILIL 895
Query: 648 STLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKN---ILVKMLLQGYEP 704
S LG DEVF A L L + + + + A+ +LQK VD +L M+ G++
Sbjct: 896 SALGTPDEVFIAKLSMMLANLEQAMTDEDKAVSLLQKY--VDPNQMTLVLADMIRDGFQG 953
Query: 705 NVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILN--YGQVFVRVTMTR 762
+ EP++S +L Q+ LK + +I + +G L+GC DET L + + T
Sbjct: 954 SREPFVSSLLELWRTWQIKYLKEKAKIAIDEGAFLLGCIDETKTLKGYFRSARPKANSTY 1013
Query: 763 EELESKDQSFFHRV----DDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVD 818
+E F +V + K ++++G ++ +NP LHPGD+RV++AV L D
Sbjct: 1014 QERVDCLPEIFVQVWRHSEGKYAVIEGLCILARNPSLHPGDIRVVKAVDAPALHH--LRD 1071
Query: 819 CIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCE-TEPPMDYTGRRSRIMDHDVTL 877
++ PQ G+R N CSGGDLDGD + + WD ++P + PMD + ++D DVT+
Sbjct: 1072 VVVLPQTGDRDLANICSGGDLDGDDYIVIWDKSMLPTDWFHEPMDNCAPKPEVLDRDVTV 1131
Query: 878 EEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAE 937
++I KF+V+YM N L I+ AH+ AD D + KC+ LA LHS AVD+ K+G P
Sbjct: 1132 DDITKFYVNYMQNCCLSQIARAHMALADFQEDGVKDEKCIQLAALHSAAVDYNKSGIPVR 1191
Query: 938 MPLALKPKEFPDFMEREDKPR---YISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASY 994
M LKPK +P FMER+ K + Y S +LG+LY + S + IRS + +
Sbjct: 1192 MTRNLKPKVWPHFMERKMKNKNAEYRSAKILGQLY--DMASHIDIRSKIQFLSPEERPQF 1249
Query: 995 DHDLEVDGFEA---FLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRD 1051
D + G E L VA K Y+ +M +M + TE E+ + + + S + D
Sbjct: 1250 DKRILKSGIEVDEKLLSVATDLKMQYDTDMRRIMARHEIETELEVWSTFVLSH-SEMSND 1308
Query: 1052 NRRYGDMKDRILLSAKNLQNEAKEWFGSSCKEN------EH-PQLASAWYHVTYSP---- 1100
+ + D+ + + +E F + C+E EH LA A Y VT
Sbjct: 1309 YKFHEDI--------GRISSALREKFSTLCQEKAGGNDFEHLAPLAVAMYKVTSEQMEAA 1360
Query: 1101 -----------SYCKERMALLSFPWIVGDILLNI 1123
+ ++R+ L+SFPW++ +L I
Sbjct: 1361 MAEKSAVLIENNKMEKRLPLISFPWVLQQVLGKI 1394
>gi|119493033|ref|XP_001263772.1| RNA-directed RNA polymerase (Sad-1), putative [Neosartorya fischeri
NRRL 181]
gi|119411932|gb|EAW21875.1| RNA-directed RNA polymerase (Sad-1), putative [Neosartorya fischeri
NRRL 181]
Length = 1599
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 285/867 (32%), Positives = 447/867 (51%), Gaps = 82/867 (9%)
Query: 299 NLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSF 358
+L V +QL + + +S E L L A+ +L+ + K + +DP+
Sbjct: 585 HLPFPVRYQLEVCLSHNYLSEFTMTREFAVKLLELGESEAVKLLEHVAIKKEVYHDPMKI 644
Query: 359 VKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCY--RALVTPMKIYCLGPELETSNYVVKNF 416
+ G IP CY A +TP IY P ++ SN V++ +
Sbjct: 645 FDLKF-AKGSTRAKIP-----------SYCCYMRSARITPTTIYYNTPSVDISNRVIRYY 692
Query: 417 AKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKH 476
+YA F+RV F +E KL +++++ + ++++RI L +GIVIGD+
Sbjct: 693 IEYADRFLRVRFTDE---KL-LGRINSTVDNTM------DEVFTRIKRALANGIVIGDRR 742
Query: 477 YEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQT 536
YEFLAF SQ R + + FA ++A ++R WMG FN IR+V+K AAR+GQ FS+++
Sbjct: 743 YEFLAFGNSQFREHGAYFFAPLPNLTAANIRAWMGTFNDIRNVAKHAARLGQCFSTTRAI 802
Query: 537 LVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQ----KCGLSHTPSAFQIR 592
PVQ + +I DV N Y FSDG+G+IS A+ A K PSAFQ R
Sbjct: 803 AGCPVQ-IRLIDDVV----QNGYTFSDGVGRISKFLAQMAASELKIKTPSDDPPSAFQFR 857
Query: 593 YGGYKGVIAVDRNSFRK-LSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLG 651
GG KG++ V + R+ + +R+S KF + + L + +WS+ LNR++I +LS+LG
Sbjct: 858 LGGCKGMLTVSPEAQRQEVHIRKSQYKFAAVHNGLEIIRWSQYSMATLNRQLIIVLSSLG 917
Query: 652 VKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILV-KMLLQGYEPNVEPYL 710
++D VF + L L + + + AL L+K + ++V +M+L G+ + EP++
Sbjct: 918 IQDRVFHDKLRAMLQSLNEAMESDSQALCWLKKYVDPNQMTLVVSQMVLDGFRSSREPFV 977
Query: 711 SMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGIL-NYGQ-VFVRVTMTREELESK 768
+ ++ L LK + +I + KG L+GC DETGIL Y + V + E+L +
Sbjct: 978 TSIMRLWKAWHLKYLKEKAKIVIEKGANLLGCMDETGILRGYSERVPAKGASDEEKLAAL 1037
Query: 769 DQSF--FHRVDD-KTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQK 825
+ F HR D K +++G ++ +NP LHPGD+RV+ AV +L D ++FPQ
Sbjct: 1038 PEIFVQIHRPDTGKCEVIEGVCILARNPSLHPGDIRVVRAVNVPQLSH--LKDVVVFPQT 1095
Query: 826 GERPHPNECSGGDLDGDIFFISWDNDLIPCE-TEPPMDYTGRRSRIMDHDVTLEEIHKFF 884
G+R P+ CSGGDLDGD + + WD DL+P + M YT +++ +D DVT+ I FF
Sbjct: 1096 GDRDIPSMCSGGDLDGDDYLVIWDQDLVPEDWFRKAMKYTSDKAQDLDQDVTVNHITSFF 1155
Query: 885 VDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKP 944
V YM ND L I+ AHL ADR D KC+ LA LHS AVD+ KTG PA M +L+P
Sbjct: 1156 VLYMKNDFLPRIAHAHLAWADRLEDGVNEEKCIRLAQLHSDAVDYNKTGKPANMTRSLQP 1215
Query: 945 KEFPDFMEREDKPR---YISFGVLGKLYRAT--LDSIMQIRSNAIWSEKIAEASYDHDLE 999
K +P FME++ KP+ Y S +LG+LY A +D + + + E+I S L
Sbjct: 1216 KVWPHFMEKKHKPKERIYKSNKILGQLYDAVERIDFVPSL--EMPFDERILTCS----LG 1269
Query: 1000 VDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMK 1059
V+ + + A K Y+ M+ +M + TE E+ + + + S + +D + + ++
Sbjct: 1270 VN--DDLVQFARDLKADYDAAMHRIMAQHEIKTEFEVWSTFVLSH-SNMSKDYKFHEEL- 1325
Query: 1060 DRILLSAKNL-QNEAKEWFGSSCKENEHPQLASAWYHVT--------------------- 1097
I S +++ + + E G E P LA A Y VT
Sbjct: 1326 GLISSSLRDMYRKKCYEKVGGRTFELLAP-LAVAMYRVTHEEMTSALVKYRAENPPDGKL 1384
Query: 1098 -YSPSYCKERMALLSFPWIVGDILLNI 1123
+ P+ + + +SFPWI+ +IL I
Sbjct: 1385 FHKPTPRIDHLPFISFPWILHNILGKI 1411
>gi|296420862|ref|XP_002839987.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636195|emb|CAZ84178.1| unnamed protein product [Tuber melanosporum]
Length = 1542
Score = 387 bits (995), Expect = e-104, Method: Compositional matrix adjust.
Identities = 260/760 (34%), Positives = 410/760 (53%), Gaps = 59/760 (7%)
Query: 300 LSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSFV 359
LS+ V +QL + + +S E I L+ L E A+ +L+ + + + YDP+
Sbjct: 575 LSYPVRYQLEVCISHNCLSEYNITCEFIDRLAALPKEAAIPLLEHIAERRIRHYDPMDIF 634
Query: 360 KTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKY 419
Q + + ++ L H +L+ +A VTP +Y P +E +N VV+ ++++
Sbjct: 635 TIQ--GVTKGTINLKLPDHCQLL-------RKANVTPSTVYFTTPTVEITNRVVRQYSEH 685
Query: 420 ASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRT--KIYSRILTILQDGIVIGDKHY 477
F+RV FV+E Q I S +T ++++R+ L GI IGD+ +
Sbjct: 686 IDRFLRVQFVDE------------KSQGRINSTDKKTMHEVFTRVKAALDHGITIGDRKF 733
Query: 478 EFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTL 537
EFLAF SQ+R + + FAS+D +SA D+R WMG F++IR V+K AAR+GQ FS+++
Sbjct: 734 EFLAFGNSQIREHGAYFFASDDHLSAADIRAWMGSFSEIRIVAKHAARLGQCFSTTRAIN 793
Query: 538 VVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGL-----SHTPSAFQIR 592
V V DV D+ V ++G Y FSDG+GKIS AR + + L PS FQ R
Sbjct: 794 GVRV-DVRTTEDI-VNAEG--YNFSDGVGKISEFLARLITTELRLRLVDKEPVPSCFQFR 849
Query: 593 YGGYKGVIAVDRNS-FRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLG 651
GG KGV+AV ++ R++ +R S LKFE+R+ +L V +WS+ LNR++I +L++LG
Sbjct: 850 LGGRKGVLAVSPDANHREVYIRPSQLKFEARHNILEVIRWSKFATAALNRQLIIVLTSLG 909
Query: 652 VKDEVFEAMQQQQLILLGKMLINREAALDVL-QKLNGVDSKNILVKMLLQGYEPNVEPYL 710
D FE Q L +++ A+ +L + ++ +S + M+ G+ EP++
Sbjct: 910 APDHYFEDKLQFMLKSYEVAMVDPGVAVRLLCRNVDPNESTLAIAAMIRAGFMDRREPFV 969
Query: 711 SMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQ 770
+L + LK + +I + +G ++G DETG L+ G + + + E+ ++ +
Sbjct: 970 MSLLKLWRAWTIKYLKEKAKIMIEEGAFVLGVVDETGTLD-GYYYSQDEGSTEDADNPET 1028
Query: 771 SF---FHRVDD-----KTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIF 822
S F +V D ++ I++G ++ +NP LHPGDVR + AV +L + ++F
Sbjct: 1029 SLPQIFLQVTDPDRPGESRIIEGPCVIARNPSLHPGDVRKVMAVNAKELHH--LRNVVVF 1086
Query: 823 PQKGERPHPNECSGGDLDGDIFFISWDNDLIPC-ETEPPMDYTGRRSRIMDHDVTLEEIH 881
QKG+R PN SGGDLDGD + I WD L C PM+Y+ + R + DV + +I
Sbjct: 1087 SQKGDRDLPNMLSGGDLDGDDYIIIWDKKLTSCVNNYEPMNYSAQTPRELARDVEIGDIT 1146
Query: 882 KFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLA 941
KFFV+YM ND LG I+ AHL AD+ + +S +C LA LHS AVD+ K+G PA MP
Sbjct: 1147 KFFVNYMKNDKLGTIANAHLAWADKRDEGVKSDECFRLAILHSHAVDYVKSGEPAIMPPE 1206
Query: 942 LKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVD 1001
L+ K FP FME++ + Y S +LG LY DS+ +I E +D D ++
Sbjct: 1207 LRRKTFPHFMEKKPEETYRSDKILGVLY----DSVSKIDFVPAL-----ELEFD-DRILN 1256
Query: 1002 GF---EAFLGVAESHKEMYEEEMNALMNYYGASTEDEILT 1038
+ E L VA + K Y+ M +M + TE E+++
Sbjct: 1257 AYTLNEEILEVARAIKIRYDAAMRRIMAQHDIHTEFEVIS 1296
>gi|322705481|gb|EFY97066.1| suppressor of ascus dominance [Metarhizium anisopliae ARSEF 23]
Length = 1315
Score = 387 bits (994), Expect = e-104, Method: Compositional matrix adjust.
Identities = 280/831 (33%), Positives = 422/831 (50%), Gaps = 60/831 (7%)
Query: 284 TTSEIVPLVKCRPGFNLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQ 343
T S+ L+ +L EV +QL + ++ A + +Q L+ L A L+
Sbjct: 353 TASQPSALLSMPQKIHLPFEVRYQLEVCISRGVLNEYAIGIDFLQELNNLQTMDATHRLE 412
Query: 344 KLHKLKSICYDPVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLG 403
L I +DP+ +L + +P + I H +A +T I
Sbjct: 413 YLVDQNEILFDPM-----KLFSMEDATAFVPAAR----IPHYCTYVRKASITATTIRFNS 463
Query: 404 PELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRIL 463
P +ETSN VV+ ++ F+RV FVEE + + R +K KI+ R+
Sbjct: 464 PTVETSNRVVRKYSHLQDRFLRVQFVEE-----------SELVRLGKTKYKNDKIWKRVE 512
Query: 464 TILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCA 523
L GI IGD+ YEFLAF +SQLR +S + F +S ED+R WMG F+ I+ V+K A
Sbjct: 513 RALSQGIRIGDRQYEFLAFGSSQLRQSSAYFFCPTGHLSCEDIRAWMGQFDHIKCVAKYA 572
Query: 524 ARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLS 583
AR+GQ FS+++ + V D++ I D++ N CF+DG+G IS ++ + ++ L
Sbjct: 573 ARIGQCFSTTRDIKGIWVPDIKYIDDIQ----RNDQCFTDGVGLISKFLSQLIMEEMTLD 628
Query: 584 --HTPSAFQIRYGGYKGVIAV-DRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLN 640
P+AFQ R GG KGV+AV + ++ +R S KF+S + L + + + LN
Sbjct: 629 IFDKPTAFQFRMGGCKGVLAVWPQAQGMEVHIRNSQEKFKSDFQGLEIVRCAARSTATLN 688
Query: 641 REIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQK-LNGVDSKNILVKMLL 699
R+ I++L +LGV ++F A+ ++Q+ + A+ +L K ++ S +L ++L
Sbjct: 689 RQTITILESLGVPKKMFMALLKEQISWYENAAKDTSEAIKLLTKFVDENQSSLVLAELLK 748
Query: 700 QGY-EPNV-EPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVR 757
G+ NV EP+ L+ + RI+VPK ++GC DE+G L G
Sbjct: 749 AGFMTDNVREPFTLNTFNLWLSWSFRLLREKTRIHVPKSAFVLGCVDESGSLR-GHSIET 807
Query: 758 VTMTREELESKDQSFFHRVDD-----KTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLE 812
+ + E+K F ++ D KT+I++GK +V +NP LHPGD+RV++AV KL
Sbjct: 808 EGCSDQLNENKLPQIFLQLTDPSHEGKTNIIQGKCIVGRNPSLHPGDIRVVQAVNNPKL- 866
Query: 813 EKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCE-TEPPMDYTGRRSRIM 871
+ D I+FP KG+RP P SGGDLDGD FFI WD+ LIP E PMDY R +
Sbjct: 867 -RHLKDVIVFPSKGDRPVPAMLSGGDLDGDDFFIIWDDRLIPKEWNHKPMDYQAPNPRQL 925
Query: 872 DHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAK 931
D DVT++++ +FFV+YM ND LG I+ AHL AD K S CL LA LHS AVD+AK
Sbjct: 926 DRDVTVDDLREFFVNYMKNDNLGLIAVAHLAFADMHGPK--SQICLRLAELHSQAVDYAK 983
Query: 932 TGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRS--NAIWSEKI 989
TG PAE ++P+ +P FME+ K Y S LG L+ Q R + ++I
Sbjct: 984 TGEPAEFGHKMQPERWPHFMEK--KSTYRSNKALGALFDEVAKHTFQFRPEWEHPFDKRI 1041
Query: 990 AEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQ 1049
E Y+ D+ L A K Y+ + LM Y TE E+ TG + + S +
Sbjct: 1042 LE-RYEFDMST------LTTAREIKAQYDSAIRRLMVQYHVETEYELYTGWVMSNTS-IS 1093
Query: 1050 RDNRRYGDMKDRILLSAKNLQNEAKEWFGSSCKENEHPQL---ASAWYHVT 1097
+ +R D+ + + + + G S E PQL +A Y VT
Sbjct: 1094 SNYKRQEDLGLEFDVVKQRFREQCCNVAGGS----EAPQLDKFVAAMYKVT 1140
>gi|295667341|ref|XP_002794220.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226286326|gb|EEH41892.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 1273
Score = 387 bits (993), Expect = e-104, Method: Compositional matrix adjust.
Identities = 261/783 (33%), Positives = 423/783 (54%), Gaps = 83/783 (10%)
Query: 386 VMSCY--RALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEE-DWSKLPANALS 442
V CY A VTP IY P ++T N V++ + +YA F+ V F +E + K+ + +
Sbjct: 459 VGCCYMRSAEVTPSTIYYKPPSIDTGNRVLRRYREYADRFLHVRFTDEKNMGKIFPYSNA 518
Query: 443 TSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVS 502
+ ++Y+R+ +++GI IGD+ YEFLAFS +QLR ++ + FAS ++
Sbjct: 519 NIV--------CMNEVYTRVTLTMKNGITIGDRCYEFLAFSNAQLREHAAYFFASLPHLT 570
Query: 503 AEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFS 562
A ++R +G FN+IR+V+K AAR+GQ FSS++ PVQ VE I D+E N Y FS
Sbjct: 571 AANIRAQLGKFNQIRNVAKHAARLGQCFSSTRALNGCPVQIVE-IDDIE----RNGYTFS 625
Query: 563 DGIGKISLSFARQVAQKCGL----SHTPSAFQIRYGGYKGVIAVDRNSFRK-LSLRRSML 617
DG+G IS A+ + + + PS FQ R GG KG++ V + R+ + +R+S
Sbjct: 626 DGVGLISTFLAQMIQSEFAIETLSGEPPSVFQFRLGGCKGILTVSSKAHRREVHIRKSQY 685
Query: 618 KFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREA 677
KF + + L + + S LNR++I +LS+LG+ DE+F Q L L + ++E
Sbjct: 686 KFAAPHNGLEIIRHSSFCFASLNRQLIIVLSSLGIPDEIFVKKLQVMLENLELAMTSQEQ 745
Query: 678 ALDVLQKLNGVDSKN---ILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVP 734
A+++LQ VD +L M+L G++ + +P+++ +L Q+ LK++ +I +
Sbjct: 746 AVNLLQTY--VDPNQMTLVLADMVLDGFQQSQDPFVTSLLELWRVWQIKYLKAKAKIAID 803
Query: 735 KGRLLIGCFDETGILNYGQVFVRV------TMTREELESKDQSFFH---RVDDKTSIVKG 785
KG L+GC DETG L + + R ++L+ + F +D +++G
Sbjct: 804 KGAFLLGCLDETGSL---KGYFRSKRPGGGATYEQKLDCLPEIFVQISRHSEDTYEVIEG 860
Query: 786 KVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFF 845
++ +NP LHPGD+RV++AV L D ++ PQ G+R + CSGGDLDGD +
Sbjct: 861 LCILARNPSLHPGDIRVVKAVDIPDLHHLK--DVVVLPQTGDRDIASMCSGGDLDGDDYV 918
Query: 846 ISWDNDLIPCE-TEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHA 904
+ WD DL+P + E PMDY+ +S ++D DVT+++I KFFV YM ND L I+ AHL A
Sbjct: 919 VIWDQDLLPKDWFEEPMDYSAPKSEVLDRDVTVDDIIKFFVSYMQNDRLPQIAPAHLAIA 978
Query: 905 DRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMER---EDKPRYIS 961
D D + KCL LATLHS AVD+ K+G P M LKPK++P FMER + +Y S
Sbjct: 979 DYSDDGVQDEKCLRLATLHSAAVDYNKSGMPVHMNRDLKPKKWPHFMERKFAKKDSQYTS 1038
Query: 962 FGVLGKLYRATLDSIMQIRSNAI-----WSEKIAEASYDHDLEVDGFEAFLGVAESHKEM 1016
+LG+LY + ++ ++ + ++I A+++ D + L A+ K
Sbjct: 1039 RKILGQLYDIAGGVYLNLQPHSAKRRLPFDQRILNANFEID------DKLLSFAKELKAE 1092
Query: 1017 YEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEW 1076
Y+ ++ +M + +E+E+ + + + A+ + +D + + I L + L+ +
Sbjct: 1093 YDADIRRIMAQHEIQSEEEVWSTFVLSHAN-MSKDYK----FHEEIGLISSALRQK---- 1143
Query: 1077 FGSSCKENEHPQ-------LASAWYHVT--------YSPSYC----KERMALLSFPWIVG 1117
F C E + LA A Y VT + S+C ++RM L+SFPW++
Sbjct: 1144 FRMLCHEKAGGKDFKSLAPLAVAMYRVTSEQMEKAKAAHSHCTLGEEQRMPLISFPWVLQ 1203
Query: 1118 DIL 1120
IL
Sbjct: 1204 PIL 1206
>gi|115402503|ref|XP_001217328.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114189174|gb|EAU30874.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 1309
Score = 386 bits (992), Expect = e-104, Method: Compositional matrix adjust.
Identities = 271/875 (30%), Positives = 438/875 (50%), Gaps = 95/875 (10%)
Query: 299 NLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSF 358
+L V +QL + N +S A E LS L A +L+ + K + YDP+
Sbjct: 368 HLPFSVRYQLEVCISNGYLSEYAMTREFAVKLSELGETQATKLLEHVATQKRVYYDPMKI 427
Query: 359 VKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAK 418
+ N K P + R A VTP +Y P ++ SN +++++ +
Sbjct: 428 FDLKFIKGATNAKIPPYCCYIR----------SARVTPSTVYYETPSMDMSNRIIRHYIE 477
Query: 419 YASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYE 478
YA F+RV F +E KL ST+ ++++R+ L +GIVIGD+ YE
Sbjct: 478 YADRFLRVRFTDE---KLLGRIYSTTDNT-------MDEVFTRVKRALANGIVIGDRRYE 527
Query: 479 FLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLV 538
FLAF SQ R + + FA ++A ++R WMG F+ IR+V+K AAR+GQ FS+++
Sbjct: 528 FLAFGNSQFREHGAYFFAPLPNLTAANIRAWMGHFDDIRNVAKHAARLGQCFSTTRAIFG 587
Query: 539 VPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQ----KCGLSHTPSAFQIRYG 594
P++ V+ I D+ N Y FSDG+G+IS A+ V K PS FQ R G
Sbjct: 588 CPIK-VQEIDDIV----RNGYRFSDGVGRISKFLAQMVMSELKIKTPSGEPPSVFQFRLG 642
Query: 595 GYKGVIAVDRNSFRK-LSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVK 653
G KG++ V + R+ + +R+S KF + + L + +WS+ LNR++I +LSTLG++
Sbjct: 643 GCKGILTVSPQAQRQEVHIRKSQAKFTATHNGLEIIRWSQFTAASLNRQLIIVLSTLGIR 702
Query: 654 DEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILV-KMLLQGYEPNVEPYLSM 712
D +F + L L + L N A+ +L++ + + + + +M++ G+ EP+ +
Sbjct: 703 DRIFHEKLRAVLWGLNEALKNDAKAIHLLRRYVDPNQRTLTISQMVVDGFRRTEEPFATS 762
Query: 713 MLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILN-------------YGQVFVRVT 759
+L L LK + +I + KG + GC DETG L + Q F +
Sbjct: 763 VLTLWRAWHLKYLKDKAKITIDKGACVFGCMDETGTLKGYFHEKIPDRDAPFEQRFAALP 822
Query: 760 MTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDC 819
++ ++D+ K +++G ++ +NP LH GD+RV++AV L + D
Sbjct: 823 EIFLQIPNQDKG------GKYEVIQGMCILARNPSLHSGDIRVVKAVDVPAL--RHLQDV 874
Query: 820 IIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCE-TEPPMDYTGRRSRIMDHDVTLE 878
++ PQ G+R + CSGGDLDGD + + WD DLIP + PPM+YT ++R +D DVT++
Sbjct: 875 VVLPQTGDRDIASMCSGGDLDGDDYVVIWDQDLIPKDWFRPPMNYTTNKARDLDRDVTVD 934
Query: 879 EIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEM 938
EI FFV YM ND L I+ AHL ADR + KC+ LA LHS AVD+ K G PA M
Sbjct: 935 EITSFFVTYMKNDCLPTIAHAHLAWADRLDNGVDEEKCIRLAQLHSDAVDYNKNGTPAHM 994
Query: 939 PLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDL 998
L+PK +P FME++ + Y S +LG+LY A R N + S E +D +
Sbjct: 995 TRNLEPKLWPHFMEKKTEKVYKSGKILGQLYDAVE------RVNFVPS---LEKPFDRRI 1045
Query: 999 ---EVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRY 1055
+ E A K+ Y+ + +M + TE E+ + + + A+ + +D + +
Sbjct: 1046 LNSRIPVAEDLYQFARDMKKDYDIALRRIMAQHEIKTEFEVWSTFVLSHAN-MSKDYKFH 1104
Query: 1056 GDMKDRILLSA---KNLQNEAKEWFGSSCKENEHPQLASAWYHVTY-------------- 1098
++ +LS+ + + E + G + P LA A Y +T+
Sbjct: 1105 EEIG---MLSSSLREGFKRECYDKVGGRGFDRVAP-LALAMYRITHEEMNAALEKHRAGF 1160
Query: 1099 ---SPSYCK-----ERMALLSFPWIVGDILLNIKS 1125
+ ++ K +++ L+SFPWI +L I +
Sbjct: 1161 SEDAKNFQKTGPKMDQLPLISFPWIFPRVLGQIAT 1195
>gi|391332207|ref|XP_003740528.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Metaseiulus
occidentalis]
Length = 1437
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 275/770 (35%), Positives = 403/770 (52%), Gaps = 78/770 (10%)
Query: 391 RALVTPMKIYCLGPELETSNYVVKNF-AKYASDFMRVTFVEEDWSKLPANALSTSIQRGI 449
R +TP + PEL T N +++NF YA +RV F +++ KL + +
Sbjct: 413 RIFITPTRKIFRFPELHTQNRILRNFEPDYA---IRVCFRDDNLEKLTFAIFNMKTKESF 469
Query: 450 FSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASND-EVSAEDVRG 508
+ + R L +G+ IG + Y+F+A S+SQLR++ VW++A + AE +RG
Sbjct: 470 LKE-----VVGRHLC---EGLKIGSRRYDFVAASSSQLRDHGVWVYARDQFGFEAETIRG 521
Query: 509 WMGCFNKIRSVSKCAARMGQLFSSSKQTL-VVPVQ-----DVEMIPDVEVTSDGNTYCFS 562
WMG F+ I +V+ ARMGQ FSS+++T+ ++P + D+ V S G YCFS
Sbjct: 522 WMGDFHDINNVATRMARMGQCFSSTQETVEILPEEELHWRDITHFESVHPLS-GRPYCFS 580
Query: 563 DGIGKISLSFARQVAQKCGLSHT-----PSAFQIRYGGYKGVIAVDRN-SFRKLSLRRSM 616
DG GKIS +QV C L H PSA QIRY G KG+I++D RKL LR SM
Sbjct: 581 DGCGKISQELMQQVW--CTLPHHAMELHPSALQIRYRGCKGMISLDTTLPGRKLVLRESM 638
Query: 617 LKFESRN-RMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINR 675
+KF+ + R L V KWS M FLNR +I++L G++ +VF +Q + ++ + L+
Sbjct: 639 IKFQCTSPRKLEVIKWSAPMNMFLNRSLIAILEHHGIRTDVFLRLQLEMIMQVADSLVCE 698
Query: 676 EAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVP- 734
+AL VL V + + G+E +P++ ML +N L +LK + + +P
Sbjct: 699 ASALRVLTSF--VKTPVPFAGLAEVGWELVRDPFIIQMLYDLLKNALVNLKVKANVAIPV 756
Query: 735 -KGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNP 793
+GR ++G DETGIL+YGQVF++ T E+ D S + + IV+G V++TK P
Sbjct: 757 NEGRNMLGVVDETGILDYGQVFIQFT----EMPYTDVS-----NARVRIVEGDVVITKCP 807
Query: 794 CLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI 853
C+HPGDVR L AV +L + DC++FP +G+ PHP E SG DLDGD + W +LI
Sbjct: 808 CMHPGDVRRLRAVDVPQL--RHIRDCVVFPSRGKAPHPFEMSGSDLDGDEYVCIWSEELI 865
Query: 854 PCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARS 913
P Y + + +E + FF +Y+ ND +G IS AHL AD+ S
Sbjct: 866 FERNAMPYVYDDKPFGVNPFKHNSDETN-FFCNYIGNDIIGIISNAHLAWADQ--AGIAS 922
Query: 914 SKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMERED-KPRYISFGVLGKLYRAT 972
KCL L S A+DFAKTG A++ KP++FPDFME+ D K Y S LG LYR T
Sbjct: 923 EKCLALVGKASKALDFAKTGDAADLYPNEKPEKFPDFMEKGDHKHSYQSQKALGILYR-T 981
Query: 973 LDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGAST 1032
+ IM + + IA LEV G++ F A++ + Y E + +M +G +
Sbjct: 982 VRQIMAVNDTMLSKGNIAP------LEVPGWQMFRERAQAALQRYNERLAHIMEQHGVVS 1035
Query: 1033 EDEILTGNLRNRASYLQRDNRRYGDMKDRILL------------SAKNLQNEAKE---WF 1077
E E+ +G + ++ + K I L + + Q E +E F
Sbjct: 1036 EGEVFSGVIGTVNTFDAVSTSSFRAEKANIALLIERQKCVLMEETKQQFQCEFEEDCALF 1095
Query: 1078 GSSCKENEHP---QLASAWYHVTYSPSYCKERMALLSFPWIVGDILLNIK 1124
G+ +E+ H Q ASAWY VTY+ E A SFPW +G LL K
Sbjct: 1096 GARTEEDRHMIRIQKASAWYMVTYT-----EDAAYFSFPWSIGHALLEAK 1140
>gi|340521639|gb|EGR51873.1| predicted protein [Trichoderma reesei QM6a]
Length = 1161
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 280/868 (32%), Positives = 437/868 (50%), Gaps = 79/868 (9%)
Query: 296 PGFNLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDP 355
P +L V +QL V + ++ E +Q L+ L A L+ L + YDP
Sbjct: 256 PFVHLEFGVRYQLEVCVSRRLLNEHTVSLEFLQGLAALDPLDAKRRLEFLADQGDVMYDP 315
Query: 356 VSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKN 415
+ N + I H + +A VTP I P +ETSN V++
Sbjct: 316 KDLL---------NWAAASTYMPNTRIPHYCVLARKAAVTPTTILLSTPVVETSNRVLRY 366
Query: 416 FAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDK 475
F F+RV FVEE T R S + ++ +IL L GI IGD+
Sbjct: 367 FNHIQDRFLRVQFVEE-----------TEFGRMAMSCRNKEDVWKKILRTLYQGIQIGDR 415
Query: 476 HYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQ 535
HY+FLAF +SQLR + F D +S +D+R WMG IR V+K AAR+GQ FS++++
Sbjct: 416 HYQFLAFGSSQLRQCGAYFFCPTDHISCDDIRRWMGEVGHIRIVAKYAARLGQCFSTTRE 475
Query: 536 TLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLS--HTPSAFQIRY 593
+P+ DV IPDVE N YCF+DG+G IS A+ + ++ L PSAFQ R
Sbjct: 476 MRGLPIPDVRSIPDVE----RNGYCFTDGVGIISDFMAQMIMEELTLDVYAEPSAFQFRM 531
Query: 594 GGYKGVIAVDRNSFR-KLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGV 652
GG KGV+ V + + ++ +R+S KF++ + L + K ++ LNR+ I++L LGV
Sbjct: 532 GGCKGVLVVWPQATKGEVCIRQSQEKFKAEVKNLEIIKCAKYSSATLNRQTITILECLGV 591
Query: 653 KDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVD---SKNILVKMLLQGYEPN--VE 707
+ F + ++Q+ L + + + A+++L N VD S IL ++L G++ + E
Sbjct: 592 TKKAFLDILEEQIRLYEEAMGKNDVAIEMLT--NCVDENQSTLILAELLQAGFKTDKVQE 649
Query: 708 PYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELES 767
P+++ +L L LK + RI V K ++GC DET L G + +++
Sbjct: 650 PFVANLLSLWRSWSLKLLKEKARIPVDKSAFVLGCVDETSTLR-GHFIATEGSSDKDISK 708
Query: 768 KDQSFFH----RVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFP 823
Q F ++ +KT +VKG +V +NP LHPGD+RV+EAV L D ++FP
Sbjct: 709 LPQIFLQVSDSKIYNKTHVVKGLCVVGRNPSLHPGDIRVVEAVDIPGLHH--LKDVVVFP 766
Query: 824 QKGERPHPNECSGGDLDGDIFFISWDNDLIP-CETEPPMDYTGRRSRIMDHDVTLEEIHK 882
G+RP PN SGGDLDGD FF+ W+ L+P P M+YT +D +V ++++
Sbjct: 767 STGDRPVPNMLSGGDLDGDDFFVIWEPTLLPEIWNHPAMNYTSPSPETLDREVNVDDLRD 826
Query: 883 FFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLAL 942
FFV YM ND L I+TAHL ADR S CLHLA LHS AVD+ KTG PAE A+
Sbjct: 827 FFVKYMKNDVLPLIATAHLALADR--LGPLSKICLHLADLHSQAVDYPKTGQPAEWNAAM 884
Query: 943 -KPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVD 1001
P+++P FME+++ YIS LG +Y +++ +I + E ++D + +D
Sbjct: 885 HNPQQWPHFMEKKNS--YISPKALGDIYN-------RVKQQSIQFQPDWETAFDRRI-LD 934
Query: 1002 GFE---AFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNR----ASYLQRDN-- 1052
FE A L A K Y+ + ++ ++ TE E+ T ++ + Y ++++
Sbjct: 935 RFEPDNATLRDARRIKSQYDGAVRRILVHHNLETEFELYTSWAMSKPPLGSEYKRQEDLG 994
Query: 1053 RRYGDMKDRI---LLSAKNLQNEAK-EWFGSSCKENEHPQLASAWYHVTYSPS------- 1101
+ + +K R + A +EAK + F ++ + ++ A + P+
Sbjct: 995 KEFDAVKQRFRDACIEAAGGHDEAKIDRFVAAMYKITEQEVKIALFEHHRGPTNEAGVMK 1054
Query: 1102 ----YCKERMALLSFPWIVGDILLNIKS 1125
M L+SFPWI +++ I +
Sbjct: 1055 PARELQARSMPLISFPWIFPWVMIRIAT 1082
>gi|327353920|gb|EGE82777.1| RNA-directed RNA polymerase [Ajellomyces dermatitidis ATCC 18188]
Length = 1672
Score = 385 bits (988), Expect = e-103, Method: Compositional matrix adjust.
Identities = 277/874 (31%), Positives = 438/874 (50%), Gaps = 94/874 (10%)
Query: 300 LSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSFV 359
L V +QL + ++ ++ + ++ L L + A +L+ + K+I YDP+
Sbjct: 604 LPFSVRYQLEVCMSHRYINEYTIEETFVRRLVQLGEKKAKELLEHVAMNKTIYYDPMEIF 663
Query: 360 KTQLHVLGRNCKSIPL---SSHKRLIDHNVMSCY--RALVTPMKIYCLGPELETSNYVVK 414
+IP +++ R+ H CY A VTP I P ++TSN V +
Sbjct: 664 ------------NIPFPKGATNGRIPGH---CCYIRSADVTPSTICYDIPSVDTSNRVFR 708
Query: 415 NFAKYASDFMRVTFVEEDW--SKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVI 472
++A F+RV F +E + P N+ ++ K+Y+R+L LQ GI I
Sbjct: 709 YHREHADRFLRVRFCDEKYIGKIYPNNSGNSQCME---------KVYARVLRTLQHGITI 759
Query: 473 GDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSS 532
GD+ YEFLAF SQLR + + FAS ++A ++R MG N IR V+K AAR+GQ FS+
Sbjct: 760 GDRRYEFLAFGNSQLREHGAYFFASLPHLTAANIRAQMGDLNNIRVVAKYAARLGQCFST 819
Query: 533 SKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGL----SHTPSA 588
++ PVQ ++ I D+E N Y FSDG+G++S + + G+ PS
Sbjct: 820 TRAVTSCPVQ-IKKIDDIE----RNGYVFSDGVGRLSHFLTQMIQSDLGIKTPSGEPPSV 874
Query: 589 FQIRYGGYKGVIAVDRNSF-RKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLL 647
FQ R GG KG++AV + R++ +RRS KF + + L + + S LNR++I +L
Sbjct: 875 FQFRLGGCKGILAVSPEARQREVHIRRSQFKFPASHNGLEIIRHSHFSYATLNRQLILIL 934
Query: 648 STLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKN---ILVKMLLQGYEP 704
S LG DEVF A L L + + + + A+ +LQK VD +L M+ G++
Sbjct: 935 SALGTPDEVFIAKLSMMLANLEQAMTDEDKAVSLLQKY--VDPNQMTLVLADMIRDGFQG 992
Query: 705 NVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILN--YGQVFVRVTMTR 762
+ EP++S +L Q+ LK + +I + +G L+GC DE+ L + + T
Sbjct: 993 SREPFVSSLLELWRTWQIKYLKEKAKIAIDEGAFLLGCIDESKTLKGYFRSARPKANSTY 1052
Query: 763 EELESKDQSFFHRV----DDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVD 818
+E F +V + K ++++G ++ +NP LHPGD+RV++AV L D
Sbjct: 1053 QERVDCLPEIFVQVWRHSEGKYAVIEGLCILARNPSLHPGDIRVVKAVDAPALHH--LRD 1110
Query: 819 CIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCE-TEPPMDYTGRRSRIMDHDVTL 877
++ PQ G+R N CSGGDLDGD + + WD ++P + PMD + ++D DVT+
Sbjct: 1111 VVVLPQTGDRDLANICSGGDLDGDDYIVIWDKSMLPTDWFHEPMDNCAPKPEVLDRDVTV 1170
Query: 878 EEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAE 937
++I KF+V+YM N L I+ AH+ AD D + KC+ LA LHS AVD+ K+G P
Sbjct: 1171 DDITKFYVNYMQNCCLSQIARAHMALADFQEDGVKDEKCIQLAALHSAAVDYNKSGIPVR 1230
Query: 938 MPLALKPKEFPDFMEREDKPR---YISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASY 994
M LKPK +P FMER+ K + Y S +LG+LY + S + IRS + +
Sbjct: 1231 MTRNLKPKVWPHFMERKMKNKNAEYRSAKILGQLY--DMASHIDIRSKIQFLSPEERPQF 1288
Query: 995 DHDLEVDGFEA---FLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRD 1051
D + G E L VA K Y+ +M +M + TE E+ + + + S + D
Sbjct: 1289 DKRILKSGIEVDEKLLSVATDLKMQYDTDMRRIMARHEIETELEVWSTFVLSH-SEMSND 1347
Query: 1052 NRRYGDMKDRILLSAKNLQNEAKEWFGSSCKEN------EH-PQLASAWYHVTYSP---- 1100
+ + D+ + + +E F + C+E EH LA A Y VT
Sbjct: 1348 YKFHEDI--------GRISSALREKFSTLCQEKAGGNDFEHLAPLAVAMYKVTSEQMEAA 1399
Query: 1101 -----------SYCKERMALLSFPWIVGDILLNI 1123
+ ++R+ L+SFPW++ +L I
Sbjct: 1400 MAEKSAVLIENNKMEKRLPLISFPWVLQQVLGKI 1433
>gi|451852221|gb|EMD65516.1| hypothetical protein COCSADRAFT_354694 [Cochliobolus sativus ND90Pr]
Length = 1365
Score = 384 bits (985), Expect = e-103, Method: Compositional matrix adjust.
Identities = 261/760 (34%), Positives = 396/760 (52%), Gaps = 66/760 (8%)
Query: 299 NLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSF 358
+LS V +QL + N + E ++ L L + A+ +L+K+ + I Y+P+
Sbjct: 403 HLSFPVRYQLEVCLSNGYIKEHNITIEFLKNLELLESQQAVQLLEKVADRQKIYYNPMEI 462
Query: 359 VKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAK 418
IP+ + KR I + +TP ++ P +ETSN +++ +
Sbjct: 463 F------------DIPIKAMKRKIPSYCLLQRSVTITPTMMHVATPVMETSNRIIRKYEA 510
Query: 419 YASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYE 478
A F+RV F +E N + + ++ R+ +++GIV+ ++YE
Sbjct: 511 DADRFIRVRFTDEKSEGQLRNQPNGRAE----------AVFDRVFRAMKNGIVVAGRYYE 560
Query: 479 FLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLV 538
FLAF SQ R N + +A SA D+R +G F+ IR+VSK AAR+GQ FS+++ +
Sbjct: 561 FLAFGNSQFRENGAYFYAPTASKSANDIRMSLGEFDHIRTVSKFAARLGQCFSTTR-AMG 619
Query: 539 VPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHT----PSAFQIRYG 594
V V+ V ++PDVE N + F+DG+GK+S A+ AQ+ GL++ PS FQ R G
Sbjct: 620 VTVKLV-IVPDVE----RNGFVFTDGVGKLSPFLAQMAAQELGLTNAFTDPPSLFQFRLG 674
Query: 595 GYKGVIAVDRN-SFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVK 653
G KGV+A+D N + ++ +RRS KF + + L + + S + NR+II +LS LGV+
Sbjct: 675 GSKGVLALDPNLNGNEVHIRRSQYKFRAPHTGLEIIRSSSFATPYFNRQIILVLSYLGVQ 734
Query: 654 DEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNI---LVKMLLQGYEPNVEPYL 710
D VF Q+ + + + AL L+K +D I + M+L G+ + EP++
Sbjct: 735 DAVFLRKQEDMMNDYSSAMTDEIIALQKLRK--NIDINQITLTMAAMVLDGFMGSREPFI 792
Query: 711 SMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGIL--NYGQVFVRVTMTREELESK 768
+L + +LK + RI + G L+GC DETG L + R TR+E +
Sbjct: 793 MSLLALWRACTIKNLKEKARIAIDNGAFLLGCVDETGTLKGHLNDPQSRRDATRDEKLAT 852
Query: 769 DQSFFHRVDDKTS-----IVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFP 823
F RV D S I++G ++ +NP LHPGDVRV+ AV L V ++FP
Sbjct: 853 LPEIFLRVSDPESKGHYIIIEGICILARNPSLHPGDVRVVRAVNVPALHHLKNV--VVFP 910
Query: 824 QKGERPHPNECSGGDLDGDIFFISWDNDLIP-CETEPPMDYTGRRSRIMDHDVTLEEIHK 882
Q G+R N CSGGDLDGD + + WD DL+P EPPMD+T + +D ++ ++ K
Sbjct: 911 QTGDRDLANMCSGGDLDGDDYMVLWDRDLVPELINEPPMDFTPEKPLEIDGPISAMDMSK 970
Query: 883 FFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLAL 942
FFV+Y+ ND LG I+ AHL AD + + CL LA LHS AVDF K+G PAEM L
Sbjct: 971 FFVNYIKNDALGPIAHAHLAQADFNEKCIGDAICLELAELHSRAVDFPKSGIPAEMKREL 1030
Query: 943 KPKEFPDFMERE---DKPRYISFGVLGKLYRATLDSIMQIRSNAIWS----EKIAEASYD 995
+P+++P FME++ Y S +LG LY D + I W ++I EA +D
Sbjct: 1031 RPRKWPHFMEKKYLSPHQIYNSKKILGLLY----DEVKLIDFEPQWENPFDKRILEA-FD 1085
Query: 996 HDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDE 1035
D E+ L A S K Y+E + LM +G TE E
Sbjct: 1086 LDQEL------LDKAASLKLSYDEALRRLMAKHGIKTEFE 1119
>gi|145245289|ref|XP_001394912.1| RNA-directed RNA polymerase (Sad-1) [Aspergillus niger CBS 513.88]
gi|134079610|emb|CAK40827.1| unnamed protein product [Aspergillus niger]
Length = 1382
Score = 384 bits (985), Expect = e-103, Method: Compositional matrix adjust.
Identities = 281/870 (32%), Positives = 445/870 (51%), Gaps = 96/870 (11%)
Query: 300 LSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDP---- 355
L V +QL + N +S E L+ L A +L+ + K YDP
Sbjct: 384 LPFPVRYQLEVCISNGYLSEFTMTHEFAVKLAELGEAKARKLLENVAGQKHQYYDPMKIF 443
Query: 356 -VSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVK 414
+ FV+ + K P H R A +TP +Y P ++ SN +++
Sbjct: 444 DLPFVRG---IRATKAKIPPYCCHMR----------SATITPSTVYYNLPSVDISNRIIR 490
Query: 415 NFAKYASDFMRVTFVEED-WSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIG 473
+ ++A F+RV F +E + ++ A + +++ +I++RI L +GIVIG
Sbjct: 491 RYMEHADRFLRVRFTDEKLYGRINARSDNSN-----------DEIFTRIKRALANGIVIG 539
Query: 474 DKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSS 533
D+ YEFLAF SQ R + + FA +++A ++R WMG F+ IR+V+K AAR+GQ FS++
Sbjct: 540 DRRYEFLAFGNSQFREHGAYFFAPLPDLTAANIRAWMGHFSDIRNVAKYAARLGQCFSTT 599
Query: 534 KQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFAR----QVAQKCGLSHTPSAF 589
+ PVQ + IPDVE N Y FSDG+GKIS A+ ++ K PSAF
Sbjct: 600 RAVAGCPVQ-IRNIPDVE----RNGYTFSDGVGKISRFLAQMAMTELKIKTPTGEPPSAF 654
Query: 590 QIRYGGYKGVIAVDRNS-FRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLS 648
Q R GG KG++AV ++ +++ +R S KF + + L++ +WS+ LNR++I ++S
Sbjct: 655 QFRLGGCKGMLAVSSDAQPQEIHIRESQNKFPTVHNGLDIIRWSQFSMATLNRQLILVMS 714
Query: 649 TLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILV-KMLLQGYEPNVE 707
TLGV DEVF A + L L + + + A++VL+K + + V +M+ G+ + E
Sbjct: 715 TLGVPDEVFHAKLKSMLRALDEAMESDSRAIEVLKKYVDPNQTTLTVSQMVSDGFRRSKE 774
Query: 708 PYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILN---YGQVFVRVTMTREE 764
P+L+ +L + LK + +I + KG L+G DETGIL Y ++ + ++
Sbjct: 775 PFLTSILALWRTWHIKYLKEKAKIVIDKGTNLLGVMDETGILKGYFYDKIPKKDASLEQK 834
Query: 765 LESKDQSFFHRVDDKTS-------IVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYV 817
L + + F + S +++G ++ +NP LHPGD+RV+ AV +L
Sbjct: 835 LAALPEIFLQIPRSEASEDGATYEVIEGLCILARNPSLHPGDIRVVRAVNVPELHS--LR 892
Query: 818 DCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCE-TEPPMDYTGRRSRIMDHDVT 876
D ++ PQ G+R + CSGGDLDGD + I WD DLI + PM YT +++ +DHDVT
Sbjct: 893 DVVVLPQTGDRDIASMCSGGDLDGDDYLIIWDQDLIHKDWFLDPMRYTSNKAQDLDHDVT 952
Query: 877 LEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPA 936
++E+ FFV YM ND+L I+ AH+ AD+ D KC+ LA LHS AVD+ KTG PA
Sbjct: 953 VDEVTSFFVMYMKNDSLPTIAHAHVAWADQLEDGVNEEKCIRLAQLHSDAVDYNKTGRPA 1012
Query: 937 EMPLALKPKEFPDFMEREDKPR---YISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEAS 993
M L+P+ +P FME+ KP+ Y S +LG+LY A + E+I S
Sbjct: 1013 IMTRNLQPRRWPHFMEKP-KPKDLIYHSEKILGQLYDAVERVDFVPSLEMPFDERILNCS 1071
Query: 994 YDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNR 1053
+EV+ E A++ K ++ + +M + TE EI + + N S + +D +
Sbjct: 1072 ----IEVN--EDLYTFAKNLKVEHDTAIRRIMAQHEIKTEFEIWSTFILNH-SQMSKDYK 1124
Query: 1054 RYGDMKDRILLSAKNLQNEAKEWFGSSCKENEHPQ-------LASAWYHVTY-------- 1098
+ ++ +SA + +E F C + LA A Y VT+
Sbjct: 1125 FHEEIG---AISAAH-----RETFRKQCYNKVEGRTFELLAPLAVAMYRVTHEEMTQALR 1176
Query: 1099 -----SPSYCKER---MALLSFPWIVGDIL 1120
SP + + + L+SFPWI+ IL
Sbjct: 1177 KHREKSPQHGTPKINQLPLISFPWILPHIL 1206
>gi|440633273|gb|ELR03192.1| hypothetical protein GMDG_01175 [Geomyces destructans 20631-21]
Length = 1568
Score = 383 bits (984), Expect = e-103, Method: Compositional matrix adjust.
Identities = 287/884 (32%), Positives = 439/884 (49%), Gaps = 112/884 (12%)
Query: 300 LSHEVLFQLNSLVHNQKVSLVAADAELIQILSGL---SMETALMVLQKLHKLKSICYDPV 356
L EV +QL + + + E ++ L+ L E A +L+ + + YD +
Sbjct: 419 LPFEVRYQLEVCISRNILEVHNITPEFVKELASLVDTDKERATCILEYISEQGKRIYDVM 478
Query: 357 SFVKTQLHVLGRNCKS-IPL-SSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVK 414
S K L + KS IP ++ R +A VTP IY P +ETSN V++
Sbjct: 479 SIFKDP-DALAHSPKSKIPTYCAYTR----------KATVTPTTIYFSSPTVETSNRVIR 527
Query: 415 NFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGD 474
F+ + F+RV F +E + NA + I+ ++++R+ L++GI IGD
Sbjct: 528 KFSAHGDRFLRVQFTDELFEGR-INACADKIRND--------QLFTRVYRTLKNGIRIGD 578
Query: 475 KHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSK 534
+H+EFLAF SQ R N + F D +S +R WMG F+ I V+K AAR+G FS+++
Sbjct: 579 RHFEFLAFGNSQFRENGAYFFCPTDGLSCVQIRDWMGKFHHINVVAKYAARLGLCFSTTR 638
Query: 535 QT-----LVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAF 589
V+ +Q+VE N Y F+DG+GKIS + +A + L H PS
Sbjct: 639 AIRNTGMTVLELQEVER----------NGYNFTDGVGKISPFLMKMIATELHLLHEPSVV 688
Query: 590 QIRYGGYKGVIAVDRNS-FRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLS 648
Q R GG KG++A+ ++ +++ +R+S KF + L + + S LNR+ I++LS
Sbjct: 689 QFRMGGCKGILAISPDAKGQEIHIRKSQTKFTAEYMGLEIIRTSSHSVATLNRQTITILS 748
Query: 649 TLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNI---LVKMLLQGYEPN 705
LGV+D VF M +QL + + + AL++L + VD ++ + M+L G+
Sbjct: 749 ALGVEDHVFNRMLDEQLSNYMDAMNDPDKALELLGRY--VDDNHMTMMIASMVLDGFMRT 806
Query: 706 VEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGIL-------NYGQVFVRV 758
EP++ +L + LK + +I V KG ++GC DET L N G +
Sbjct: 807 KEPFVLSLLHLWRSWSIKLLKEKAKIIVEKGAFVLGCTDETQTLRGHSKTTNAG----KG 862
Query: 759 TMTREELESKDQSFFHRVDDKTS----IVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEK 814
T+T E+++ Q + D K I++G LV +NP LHPGD+RV++AV L
Sbjct: 863 TITAEDIDKLPQIYLQVTDRKDPRHNVIIEGLCLVGRNPSLHPGDIRVVQAVDVPALHH- 921
Query: 815 DYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCE-TEPPMDYTGRRSRIMDH 873
D ++F Q G+R P CSGGDLDGD FF+ WD DL+P E PMDYT +D
Sbjct: 922 -LRDVVVFSQLGDRDVPGMCSGGDLDGDDFFVIWDQDLLPREWNAEPMDYTAPPPVKLDR 980
Query: 874 DVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTG 933
V + ++ FFV YM +DTL I+ AHL +D+ R KCL LA LHS AVDF K+G
Sbjct: 981 PVEINDVMSFFVKYMKSDTLPTIAHAHLALSDQLDFSVRDPKCLELAALHSKAVDFVKSG 1040
Query: 934 APAEMPLALKPKEFPDFMEREDKPR---YISFGVLGKLYRA--TLDSIMQIRSNAIWSEK 988
PAEMP L+P+++P FME++ KP+ Y+S +LG+LY ++D I S + ++
Sbjct: 1041 IPAEMPKYLRPRKWPHFMEKKHKPKEQIYVSKKILGQLYDKVESVDFIPHYESP--FDKR 1098
Query: 989 IAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYL 1048
I A Y D A L +A K Y+ M +M + TE E+ T S++
Sbjct: 1099 ILRA-YPED------RAILKLARQIKSQYDTAMRRIMAQHDIETEFEVWT-------SFV 1144
Query: 1049 QRDNRRYGDMK--DRILLSAKNLQNEAKEWFGSSCKENEHPQL---ASAWYHVT-----Y 1098
R D K + + + + L+ KE + ++ L A+A Y VT
Sbjct: 1145 LSKPRVGSDYKVQEEMGIISSTLKARFKEICVEAAGGSDFKALGPFATAMYQVTCEELAI 1204
Query: 1099 SPSYCK-----------------ERMALLSFPWIVGDILLNIKS 1125
+ C+ + M L+SFPWI +L I +
Sbjct: 1205 ALHECRTMKTIGGRDVPKRKMEPKSMPLMSFPWIFQSVLGRIAT 1248
>gi|154290540|ref|XP_001545863.1| hypothetical protein BC1G_15614 [Botryotinia fuckeliana B05.10]
Length = 1173
Score = 383 bits (984), Expect = e-103, Method: Compositional matrix adjust.
Identities = 282/863 (32%), Positives = 421/863 (48%), Gaps = 88/863 (10%)
Query: 224 DFDFFWVRTTDFSVTKS-----IGCSTSFFWEIKNGLLASD----------------IS- 261
+FD F + + ++ K IG T++ W NG D IS
Sbjct: 39 EFDPFIIESQPVALHKKRPVIDIGRWTTYRWTFNNGQCPPDKFQMVQAALQDFNIDMISL 98
Query: 262 ---NIFPFYKEDKTDLILEEGEEFCTTSEIVPLVKCRPGFNLSHEVLFQLNSLVHNQKVS 318
N+ P K + LI + E T + + L NL EV +QL + + V+
Sbjct: 99 NSFNLMPMRKAELWSLI-DPCEAKTTQAGLRSLDPSSVKVNLPFEVRYQLEVCISREIVN 157
Query: 319 LVAADAELIQILSGLSMETALMVLQKL-----HKLKSICYDPVSFVKTQLHVLGRNCKSI 373
D + I L+ LS + L H YDP S N +++
Sbjct: 158 EYNIDEKFINSLAELSAQDPAKARNLLEYVAEHYSSKRLYDPSSIFT--------NSEAL 209
Query: 374 PLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASD--FMRVTFVEE 431
S+ I H +A VTP I P +ET+N V+++++K + F+RV F +E
Sbjct: 210 SFSALTD-IPHYCAFSRKATVTPTSILFNSPTVETTNRVLRHYSKENQEGRFLRVQFTDE 268
Query: 432 DWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNS 491
+ N+ + I+ I++R+ ++ +GI IGD+HYEFLAF SQ R N
Sbjct: 269 KFEGR-INSCADKIRND--------AIFTRVFRVISNGIRIGDRHYEFLAFGNSQFRENG 319
Query: 492 VWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVE 551
+ F + +S D+R WMG F+ I V+K AAR+GQ FS+++ + D+ IPD+E
Sbjct: 320 AYFFCPSANLSCNDIRQWMGTFSHINVVAKYAARLGQCFSTTRAIKGLSAPDIVKIPDIE 379
Query: 552 VTSDGNTYCFSDGIGKISLSFARQVAQ--KCGLSHTPSAFQIRYGGYKGVIAVDRNSF-R 608
YCF+DG+GKIS A+ +A K + PSAFQ R GG KG++ V ++
Sbjct: 380 ----RGRYCFTDGVGKISPYLAQMIASELKLRVDLAPSAFQFRLGGCKGILVVSPDAKDN 435
Query: 609 KLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILL 668
++ +R+S KF + L + + S+ LNR+ I++LS LGVKDEVF M +QL
Sbjct: 436 EVHIRKSQQKFTAAYNGLEIIRCSQFSSATLNRQTITILSALGVKDEVFLKMLSRQLSDY 495
Query: 669 GKMLINREAALDVLQKLNGVDSKNILVK---MLLQGYEPNVEPYLSMMLLSHHENQLSDL 725
+ N AL +L + +D ++ + M+L G+ EP++ +L + L
Sbjct: 496 QSAMSNNAIALGLLNRY--IDDNHMTINIAGMILNGFMSEKEPFVLSLLHLWRAWSIKLL 553
Query: 726 KSRCRIYVPKGRLLIGCFDETGIL-NYGQVFVRVTMTREELESKDQSFFHRVDDKT---- 780
K + +I V G ++GC DET L Y + V T +E E F +V D+
Sbjct: 554 KEKAKIIVENGAFVLGCVDETNTLRGYTKPTVAYGTTYKETELP--QIFIQVPDRENTTQ 611
Query: 781 -SIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDL 839
++++G LV +NP LHPGD+RV++AV L D ++FPQ GER P+ CSGGDL
Sbjct: 612 YNVIEGICLVGRNPSLHPGDLRVVQAVNIPALHH--LRDVVVFPQSGERDVPSMCSGGDL 669
Query: 840 DGDIFFISWDNDLIPCETE-PPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAIST 898
DGD FF+ WD DL P E PM Y + V + ++ KFFV YM ND+L +I+
Sbjct: 670 DGDDFFVIWDKDLQPTEWNCEPMSYAALDPVALKRPVVVTDLQKFFVKYMKNDSLPSIAH 729
Query: 899 AHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKP- 957
AHL AD + KCL LA LHS AVD+ KTG PA M L P ++P FME+ +P
Sbjct: 730 AHLAQADYQKQGIKDPKCLKLAELHSKAVDYVKTGQPATMQKYLAPPKWPHFMEKIHQPA 789
Query: 958 --RYISFGVLGKLYRA--TLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESH 1013
+Y S +LG+LY ++D + Q + ++I A Y+ D A L A
Sbjct: 790 SKQYHSQKILGQLYDKVESVDFVPQYEEP--FDKRILRA-YELD------NATLKAARQT 840
Query: 1014 KEMYEEEMNALMNYYGASTEDEI 1036
K Y+ M ++ TE E+
Sbjct: 841 KTKYDTAMRRILAQQDIKTEFEV 863
>gi|350631624|gb|EHA19995.1| hypothetical protein ASPNIDRAFT_179412 [Aspergillus niger ATCC 1015]
Length = 1201
Score = 383 bits (984), Expect = e-103, Method: Compositional matrix adjust.
Identities = 281/870 (32%), Positives = 444/870 (51%), Gaps = 96/870 (11%)
Query: 300 LSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDP---- 355
L V +QL + N +S E L+ L A +L+ + K YDP
Sbjct: 375 LPFPVRYQLEVCISNGYLSEFTMTHEFAVKLAELGEAKARKLLENVAGQKHQYYDPMKIF 434
Query: 356 -VSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVK 414
+ FV+ + K P H R A +TP +Y P ++ SN +++
Sbjct: 435 DLPFVRG---IRATKAKIPPYCCHMR----------SATITPSTVYYNLPSVDISNRIIR 481
Query: 415 NFAKYASDFMRVTFVEED-WSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIG 473
+ ++A F+RV F +E + ++ A + +++ +I++RI L +GIVIG
Sbjct: 482 RYMEHADRFLRVRFTDEKLYGRINARSDNSN-----------DEIFTRIKRALANGIVIG 530
Query: 474 DKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSS 533
D+ YEFLAF SQ R + + FA +++A ++R WMG F+ IR+V+K AAR+GQ FS++
Sbjct: 531 DRRYEFLAFGNSQFREHGAYFFAPLPDLTAANIRAWMGHFSDIRNVAKYAARLGQCFSTT 590
Query: 534 KQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFAR----QVAQKCGLSHTPSAF 589
+ PVQ + IPDVE N Y FSDG+GKIS A+ ++ K PSAF
Sbjct: 591 RAVAGCPVQ-IRNIPDVE----RNGYTFSDGVGKISRFLAQMAMTELKIKTPTGEPPSAF 645
Query: 590 QIRYGGYKGVIAVDRNS-FRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLS 648
Q R GG KG++AV ++ +++ +R S KF + + L + +WS+ LNR++I ++S
Sbjct: 646 QFRLGGCKGMLAVSSDAQPQEIHIRESQNKFPTVHNGLEIIRWSQFSMATLNRQLILVMS 705
Query: 649 TLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILV-KMLLQGYEPNVE 707
TLGV DEVF A + L L + + + A++VL+K + + V +M+ G+ + E
Sbjct: 706 TLGVPDEVFHAKLKSMLRALDEAMESDSRAIEVLKKYVDPNQTTLTVSQMVSDGFRRSKE 765
Query: 708 PYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILN---YGQVFVRVTMTREE 764
P+L+ +L + LK + +I + KG L+G DETGIL Y ++ + ++
Sbjct: 766 PFLTSILALWRTWHIKYLKEKAKIVIDKGTNLLGVMDETGILKGYFYDKIPKKDASLEQK 825
Query: 765 LESKDQSFFHRVDDKTS-------IVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYV 817
L + + F + S +++G ++ +NP LHPGD+RV+ AV +L
Sbjct: 826 LAALPEIFLQIPRSEASEDGATYEVIEGLCILARNPSLHPGDIRVVRAVNVPELHS--LR 883
Query: 818 DCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCE-TEPPMDYTGRRSRIMDHDVT 876
D ++ PQ G+R + CSGGDLDGD + I WD DLI + PM YT +++ +DHDVT
Sbjct: 884 DVVVLPQTGDRDIASMCSGGDLDGDDYLIIWDQDLIHKDWFLDPMRYTSNKAQDLDHDVT 943
Query: 877 LEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPA 936
++E+ FFV YM ND+L I+ AH+ AD+ D KC+ LA LHS AVD+ KTG PA
Sbjct: 944 VDEVTSFFVMYMKNDSLPTIAHAHVAWADQLEDGVNEEKCIRLAQLHSDAVDYNKTGRPA 1003
Query: 937 EMPLALKPKEFPDFMEREDKPR---YISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEAS 993
M L+P+ +P FME+ KP+ Y S +LG+LY A + E+I S
Sbjct: 1004 IMTRNLQPRRWPHFMEKP-KPKDLIYHSEKILGQLYDAVERVDFVPSLEMPFDERILNCS 1062
Query: 994 YDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNR 1053
+EV+ E A++ K ++ + +M + TE EI + + N S + +D +
Sbjct: 1063 ----IEVN--EDLYTFAKNLKVEHDTAIRRIMAQHEIKTEFEIWSTFILNH-SQMSKDYK 1115
Query: 1054 RYGDMKDRILLSAKNLQNEAKEWFGSSCKENEHPQ-------LASAWYHVTY-------- 1098
+ ++ +SA + +E F C + LA A Y VT+
Sbjct: 1116 FHEEIG---AISAAH-----RETFRKQCYNKVEGRTFELLAPLAVAMYRVTHEEMTQALR 1167
Query: 1099 -----SPSYCKER---MALLSFPWIVGDIL 1120
SP + + + L+SFPWI+ IL
Sbjct: 1168 KHREKSPQHGTPKINQLPLISFPWILPHIL 1197
>gi|222629015|gb|EEE61147.1| hypothetical protein OsJ_15104 [Oryza sativa Japonica Group]
Length = 335
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 192/311 (61%), Positives = 233/311 (74%), Gaps = 3/311 (0%)
Query: 817 VDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVT 876
VDC++FPQ+GERPHPNECSGGDLDGD++FI+WD+ LIP + + PMDYT R RIMDH VT
Sbjct: 2 VDCLVFPQRGERPHPNECSGGDLDGDLYFITWDDKLIPEKVDTPMDYTATRPRIMDHVVT 61
Query: 877 LEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPA 936
LEEI K FVDYMIND+LGAISTAHL+HADR P KARS +CL LATLHSMAVDFAKTGAPA
Sbjct: 62 LEEIQKHFVDYMINDSLGAISTAHLIHADRSPLKARSPECLQLATLHSMAVDFAKTGAPA 121
Query: 937 EMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEAS--Y 994
EMP L+P+E+PDFMER +KP YIS GVLGKLYR+ + + + + S A+ S Y
Sbjct: 122 EMPRTLRPREYPDFMERWEKPMYISNGVLGKLYRSAMGHMEKSGDSGALSSSSAQPSPTY 181
Query: 995 DHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNRR 1054
D DLEV G + FL AE + E+YEE++ LMNYY A EDEILTGN+RN+ YL+RDN+R
Sbjct: 182 DPDLEVPGSDEFLQAAEEYYELYEEKLTTLMNYYRAELEDEILTGNIRNKMLYLKRDNKR 241
Query: 1055 YGDMKDRILLSAKNLQNEAKEWFGSSCKENEHPQLASAWYHVTYSPSYCKERMALLSFPW 1114
Y +MKDRI+ + L EA+ W SS KE + ++ASAWY VTY P + + SFPW
Sbjct: 242 YFEMKDRIVAAVDALHREARGWLLSSRKEEDASRMASAWYRVTYHPDRRRGKR-FWSFPW 300
Query: 1115 IVGDILLNIKS 1125
I D LL IK+
Sbjct: 301 IACDNLLAIKA 311
>gi|296804254|ref|XP_002842979.1| RNA-directed RNA polymerase Rdp1 [Arthroderma otae CBS 113480]
gi|238845581|gb|EEQ35243.1| RNA-directed RNA polymerase Rdp1 [Arthroderma otae CBS 113480]
Length = 1473
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 273/901 (30%), Positives = 442/901 (49%), Gaps = 149/901 (16%)
Query: 299 NLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSF 358
++S+ V +QL + + +S E + L L + A +L+ + + K++ +DP+
Sbjct: 404 HISYTVRYQLEVCISHGLLSEYTITKEFAERLQSLGEDDARDLLEHVSREKAVYHDPMKI 463
Query: 359 VKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCY--RALVTPMKIYCLGPELETSNYVVKNF 416
+ G + IP + CY A VTP IY P ++TSN V++ +
Sbjct: 464 FDIEF-FSGVTGRKIPKNC-----------CYMRSATVTPSTIYFHTPTVDTSNRVLRYY 511
Query: 417 AKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKH 476
++A F+RV F +E + ++ + + ++++R+ + +GI +GD+H
Sbjct: 512 IEHADRFLRVRFADEKYEGRINSSYNNCMD----------ELFTRVKRTMTNGITVGDRH 561
Query: 477 YEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQT 536
YEFLAF SQ R + + FAS ++A ++R WMG F+ I+ V+K AAR+GQ FS++K
Sbjct: 562 YEFLAFGNSQFREHGAYFFASLPTLTAANIRAWMGHFSDIKIVAKHAARLGQCFSATKAV 621
Query: 537 LVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLS----HTPSAFQIR 592
PV V+ I ++E N Y FSDG+G+IS A+ + + + PS FQ R
Sbjct: 622 TGCPVI-VQEIDEIE----RNGYIFSDGVGRISNFLAQMIRTELNIQTPSDEPPSVFQFR 676
Query: 593 YGGYKGVIAVDRNS-FRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLG 651
GG KG++ V + R++ +R+S KF + + L V + S+ LNR++I +LS LG
Sbjct: 677 LGGCKGILTVSPEAQHREVHIRKSQYKFAAVHNGLEVIRHSKFAGAHLNRQLIMVLSALG 736
Query: 652 VKDEVFEAMQQQQLIL--LGKMLINREAALDVLQKLNGVDSKN---ILVKMLLQGYEPNV 706
V DE+F +++ L+L + + N A+ +LQK VD +L M+ G++ +
Sbjct: 737 VTDEIF--LKKLHLVLEDMQDAMTNESKAITLLQKR--VDPNQMTFLLAHMVNDGFQASC 792
Query: 707 EPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGIL----------------- 749
EP++ +L + LK + +I++ KG L+GC DET L
Sbjct: 793 EPFVKSLLELWRAWDIKYLKEKAKIHIEKGACLLGCIDETATLKGYYEKERPASDATIEE 852
Query: 750 ---NYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAV 806
N ++FV+V T EE + K I++G ++ +NP LHPGD+RV+ AV
Sbjct: 853 RLDNLPEIFVQVFDTEEETKYK-------------IIEGPCILARNPSLHPGDIRVVRAV 899
Query: 807 YEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIP------CETEPP 860
L D I+FPQ G+R + CSGGDLDGD + + WD DLIP CE P
Sbjct: 900 NVPALHH--LKDVIVFPQTGDRDVSSTCSGGDLDGDDYIVIWDPDLIPLPKDWFCE---P 954
Query: 861 MDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLA 920
MDYT ++ + DVT+ +I FFV YM ND L I+ +HL AD D +C+ LA
Sbjct: 955 MDYTASNAQSLTRDVTVNDITSFFVTYMKNDHLPQIAHSHLAFADYVEDGVNDERCMQLA 1014
Query: 921 TLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPR---YISFGVLGKLYRATLDSIM 977
LHS AVD+ KTG PA M L P+++P FME+ KP+ Y S +LG++Y
Sbjct: 1015 QLHSAAVDYNKTGIPANMSRDLIPRKWPHFMEKNHKPKEAQYYSRKILGQIYDIVERVEF 1074
Query: 978 QIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEI- 1036
+ + A + ++I + + + + +A+ K +Y+ +M +M + TE E+
Sbjct: 1075 RPKLEAPFDKRILNS------HIPVSDDLIQIAKKMKVLYDADMRRIMAQHEVKTEFEVW 1128
Query: 1037 ----------------------LTGNLRNRASYLQRDNRRYGDMKDRILLS--------- 1065
++ LRNR + D D + L+
Sbjct: 1129 STFALGHANMTKDYRFHEELGQISSGLRNRFLMMCHDEAGGHDFQHLAPLAIAMYRVTAE 1188
Query: 1066 --AKNLQNE--AKEWFGSSC--KENEHPQLASAWYHVTYSPSYCKERMALLSFPWIVGDI 1119
A+ L+ E +KE GS+ KE ++P E++ L+SFPW++ +
Sbjct: 1189 EVAEALREEKISKESGGSAGPRKERKYP---------------GDEQLPLISFPWVLQPV 1233
Query: 1120 L 1120
L
Sbjct: 1234 L 1234
>gi|392864142|gb|EAS35051.2| RNA-directed RNA polymerase [Coccidioides immitis RS]
Length = 1403
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 275/878 (31%), Positives = 437/878 (49%), Gaps = 104/878 (11%)
Query: 300 LSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSFV 359
L V +QL + + ++ E + L L A +L+ + K + YDP
Sbjct: 371 LPFSVRYQLEVCLSHGLLNEYTIGKEFVAALVALGETKARELLEHVASEKHVYYDPKKIF 430
Query: 360 KTQLHVLGRNCKSIPLSSHKRLIDHNVMSCY--RALVTPMKIYCLGPELETSNYVVKNFA 417
L V + IP CY A VTP +Y P ++ +N V++++
Sbjct: 431 DI-LFVKPATSRRIP-----------KYCCYMRTARVTPSTVYFGTPSVDITNRVIRHYI 478
Query: 418 KYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHY 477
+YA F+RV F +E + + + ++ ++++R+ + +GI +GD+HY
Sbjct: 479 EYADRFLRVRFTDEKFEGRIQPSHNNTMD----------EVFTRVKRTMMNGITLGDRHY 528
Query: 478 EFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTL 537
EFLAF SQ R + + FAS ++A ++R WMG F+ I+ +++ AAR+GQ FS+++
Sbjct: 529 EFLAFGNSQFREHGAYFFASLPHLTAANIRAWMGHFSDIKEIARHAARLGQCFSTTRAVT 588
Query: 538 VVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQK------CGLSHTPSAFQI 591
PVQ + I D++ N Y FSDG+G+IS A+ V + CG PS FQ
Sbjct: 589 GCPVQ-IREIEDIQ----RNGYTFSDGVGRISRFLAQMVMTEFKIKTPCG--EPPSVFQF 641
Query: 592 RYGGYKGVIAVDRNSFRK-LSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTL 650
R GG KG++ V + R+ + +R+S KF + + L V + S LNR++I +LS+L
Sbjct: 642 RLGGCKGILTVSPEAQRQQVHIRKSQYKFPAIHNGLEVIRHSHFCMASLNRQLIVVLSSL 701
Query: 651 GVKDEVFEAMQQQQLILLGKMLINREAALDVLQK-LNGVDSKNILVKMLLQGYEPNVEPY 709
V DEVF + L L + + A+ +L K ++ +L +M+ G++ + EP+
Sbjct: 702 EVPDEVFLEKLRMMLGNLELAMTSETQAIHLLHKYIDPNQMTLVLAEMIQDGFQSSKEPF 761
Query: 710 LSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKD 769
++ +L Q+ LK + +I + +G L GC DETG L + + + SKD
Sbjct: 762 VTSLLELWRAWQIKYLKEKAKIIIEEGACLFGCLDETGTLK--------GLFHDNIPSKD 813
Query: 770 QSFFHRV---------------DDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEK 814
S+ R+ D K I++G ++ +NP LHPGD+RV++AV L
Sbjct: 814 ASYEERLACLPEIFVQISRANNDGKYEIIEGPCIIARNPSLHPGDIRVVKAVNAPALHH- 872
Query: 815 DYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCE-TEPPMDYTGR-RSRIMD 872
D I+FPQ G+R P+ CSGGDLDGD + + WD DL+P + + PM+Y ++ +
Sbjct: 873 -LRDVIVFPQTGDRDIPSMCSGGDLDGDDYLVIWDQDLLPKDWFKQPMNYAPSVKALRLS 931
Query: 873 HDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKT 932
DVT+ +I FFV YM ND L I+ +HL AD SKC+ LA LHS AVD+ KT
Sbjct: 932 RDVTVNDITSFFVTYMKNDRLAQIAHSHLAWADYLEKGVNDSKCIRLAELHSAAVDYNKT 991
Query: 933 GAPAEMPLALKPKEFPDFMEREDKPR---YISFGVLGKLYRATLDSIMQIRSNAIWSEKI 989
G PA+M L P+++P FME++ KP+ YIS +LGKLY I + K+
Sbjct: 992 GIPAKMTKDLAPRKWPHFMEKKHKPKDAQYISQKILGKLY--------DIVERVNYRPKL 1043
Query: 990 AEASYDHDLEVDGFEA---FLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRAS 1046
EA +D + G E L VA K +Y+ +M +M + TE E+ + + + S
Sbjct: 1044 -EAPFDDRILNSGIEVNDDLLAVAAELKVLYDADMCRIMAQHEIKTEFEVWSTFVLSH-S 1101
Query: 1047 YLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSCKENEHPQLASAWYHVT--------- 1097
+ +D + + ++ + +N E G E+ P LA A Y VT
Sbjct: 1102 NMSKDYKFHEEIGQISCALRERFRNLCCEKAGGKNFEHLAP-LAVAMYKVTCNEMTQALA 1160
Query: 1098 -----------YSP-SYCKERMALLSFPWIVGDILLNI 1123
SP S +E++ L+SFPW++ +L I
Sbjct: 1161 KIKARYGEDDDQSPWSEHEEKLPLISFPWLLQPVLGKI 1198
>gi|358384867|gb|EHK22464.1| hypothetical protein TRIVIDRAFT_28428 [Trichoderma virens Gv29-8]
Length = 1158
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 285/870 (32%), Positives = 435/870 (50%), Gaps = 81/870 (9%)
Query: 296 PGFNLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDP 355
P +L V +QL V + ++ E +Q L+ L A L+ L + Y+P
Sbjct: 248 PFVHLDFGVRYQLEVCVGRRVLNEHTISLEFLQKLAALDPLDAKRRLEFLLDNGEVMYNP 307
Query: 356 VSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKN 415
+L +P + I H + +A +TP I P +ETSN V++
Sbjct: 308 -----QELFTWSAAASYVPNTR----IPHYCVLARKAAITPTSILLSSPIVETSNRVLRY 358
Query: 416 FAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTK--IYSRILTILQDGIVIG 473
F F+RV FVEE ++ G + R K ++ +IL L +GI IG
Sbjct: 359 FNHIQDRFLRVQFVEE-------------MESGRIAMTSRNKEDVWKKILRTLYEGIQIG 405
Query: 474 DKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSS 533
D+ YEFLAF +SQLR + F D +S +D+R WMG IR V+K AAR+GQ FS++
Sbjct: 406 DRRYEFLAFGSSQLRQCGAYFFCPTDHISCDDIRRWMGEVGHIRIVAKHAARLGQCFSTT 465
Query: 534 KQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLS--HTPSAFQI 591
++ +PV DV IPD+E N YCF+DG+G IS AR + ++ L P+AFQ
Sbjct: 466 REMRGLPVPDVRRIPDIE----RNGYCFTDGVGMISEFMARMIIEEMTLDVYTEPTAFQF 521
Query: 592 RYGGYKGVIAVDRNSFR-KLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTL 650
R GG KGV+ V + + ++ +R S KF++ + L + K ++ LNR+ I++L L
Sbjct: 522 RMGGCKGVLVVWPQAKKGEVYIRESQEKFKADVKGLEIIKCAKYSSATLNRQTITILECL 581
Query: 651 GVKDEVFEAMQQQQLILLGKMLINREAALDVLQK-LNGVDSKNILVKMLLQGYEPNV--E 707
GV F A+ ++Q+ L + + N A+++L K ++ S IL ++L G++ + E
Sbjct: 582 GVSTPAFLAILEKQISLYEEAMKNNNVAVNILTKCVDENQSTLILAELLQSGFKTDTVQE 641
Query: 708 PYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELES 767
P+++ +L L L+ + RI + K ++GC DETGIL G +++
Sbjct: 642 PFVTNLLALWRSWSLKLLRDKARIPIEKSAFVLGCVDETGILR-GHSNATEGTVDKDINK 700
Query: 768 KDQSFFH----RVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFP 823
Q F +V D+ + ++G +V +NP LHPGD+RV+EAV +L D ++FP
Sbjct: 701 LPQIFLQVSDSKVYDQANAIEGVCIVGRNPSLHPGDIRVVEAVDIPELHH--LKDVVVFP 758
Query: 824 QKGERPHPNECSGGDLDGDIFFISWDNDLIPCE-TEPPMDYTGRRSRIMDHDVTLEEIHK 882
G+RP PN SGGDLDGD FFI W+ LIP E P M+Y+ +D DV ++
Sbjct: 759 STGDRPVPNMLSGGDLDGDDFFIIWEPTLIPTEWNHPAMNYSSPSPATLDRDVNANDLRD 818
Query: 883 FFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEM-PLA 941
FFV YM ND L I+TAHL AD D K S CL LA LHS AVD+ KTG PAE P
Sbjct: 819 FFVRYMQNDVLPLIATAHLGLADSDGPK--SDICLRLAELHSQAVDYPKTGEPAEWNPGL 876
Query: 942 LKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDL--- 998
PKE+P FM++ K Y S LG +Y + +Q R + W E ++D +
Sbjct: 877 HNPKEWPHFMDK--KVCYKSKKALGAIYNRVIKQSIQFRPD--W-----ENAFDQRILKR 927
Query: 999 -EVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRAS----YLQRD-- 1051
++D A L A K Y+ + ++ + TE E+ T ++ S Y +++
Sbjct: 928 FQLDN--AMLKDARIIKSQYDIAVRRILLQHKLETEFELYTSWAMSKPSVGSDYKRQEEL 985
Query: 1052 NRRYGDMKDRI---LLSAKNLQNEAK-EWFGSSCKENEHPQLASAWYHVTYSPS-----Y 1102
+ + +K R A +EAK + F ++ + ++ A + P+
Sbjct: 986 GKEFDAVKQRFREACFEAAGGYDEAKIDKFVAAMYKVTEEEIKIALFEHHRGPTNEAGVI 1045
Query: 1103 CKER------MALLSFPWIVGDILLNIKSV 1126
ER M L+SFPWI +++ I S
Sbjct: 1046 VPERKLEAKSMPLISFPWIFPWVMIRIASA 1075
>gi|119192036|ref|XP_001246624.1| hypothetical protein CIMG_00395 [Coccidioides immitis RS]
Length = 1492
Score = 381 bits (979), Expect = e-102, Method: Compositional matrix adjust.
Identities = 275/878 (31%), Positives = 437/878 (49%), Gaps = 104/878 (11%)
Query: 300 LSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSFV 359
L V +QL + + ++ E + L L A +L+ + K + YDP
Sbjct: 460 LPFSVRYQLEVCLSHGLLNEYTIGKEFVAALVALGETKARELLEHVASEKHVYYDPKKIF 519
Query: 360 KTQLHVLGRNCKSIPLSSHKRLIDHNVMSCY--RALVTPMKIYCLGPELETSNYVVKNFA 417
L V + IP CY A VTP +Y P ++ +N V++++
Sbjct: 520 DI-LFVKPATSRRIP-----------KYCCYMRTARVTPSTVYFGTPSVDITNRVIRHYI 567
Query: 418 KYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHY 477
+YA F+RV F +E + + + ++ ++++R+ + +GI +GD+HY
Sbjct: 568 EYADRFLRVRFTDEKFEGRIQPSHNNTMD----------EVFTRVKRTMMNGITLGDRHY 617
Query: 478 EFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTL 537
EFLAF SQ R + + FAS ++A ++R WMG F+ I+ +++ AAR+GQ FS+++
Sbjct: 618 EFLAFGNSQFREHGAYFFASLPHLTAANIRAWMGHFSDIKEIARHAARLGQCFSTTRAVT 677
Query: 538 VVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQK------CGLSHTPSAFQI 591
PVQ + I D++ N Y FSDG+G+IS A+ V + CG PS FQ
Sbjct: 678 GCPVQ-IREIEDIQ----RNGYTFSDGVGRISRFLAQMVMTEFKIKTPCG--EPPSVFQF 730
Query: 592 RYGGYKGVIAVDRNSFRK-LSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTL 650
R GG KG++ V + R+ + +R+S KF + + L V + S LNR++I +LS+L
Sbjct: 731 RLGGCKGILTVSPEAQRQQVHIRKSQYKFPAIHNGLEVIRHSHFCMASLNRQLIVVLSSL 790
Query: 651 GVKDEVFEAMQQQQLILLGKMLINREAALDVLQK-LNGVDSKNILVKMLLQGYEPNVEPY 709
V DEVF + L L + + A+ +L K ++ +L +M+ G++ + EP+
Sbjct: 791 EVPDEVFLEKLRMMLGNLELAMTSETQAIHLLHKYIDPNQMTLVLAEMIQDGFQSSKEPF 850
Query: 710 LSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKD 769
++ +L Q+ LK + +I + +G L GC DETG L + + + SKD
Sbjct: 851 VTSLLELWRAWQIKYLKEKAKIIIEEGACLFGCLDETGTLK--------GLFHDNIPSKD 902
Query: 770 QSFFHRV---------------DDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEK 814
S+ R+ D K I++G ++ +NP LHPGD+RV++AV L
Sbjct: 903 ASYEERLACLPEIFVQISRANNDGKYEIIEGPCIIARNPSLHPGDIRVVKAVNAPALHH- 961
Query: 815 DYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCE-TEPPMDYTGR-RSRIMD 872
D I+FPQ G+R P+ CSGGDLDGD + + WD DL+P + + PM+Y ++ +
Sbjct: 962 -LRDVIVFPQTGDRDIPSMCSGGDLDGDDYLVIWDQDLLPKDWFKQPMNYAPSVKALRLS 1020
Query: 873 HDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKT 932
DVT+ +I FFV YM ND L I+ +HL AD SKC+ LA LHS AVD+ KT
Sbjct: 1021 RDVTVNDITSFFVTYMKNDRLAQIAHSHLAWADYLEKGVNDSKCIRLAELHSAAVDYNKT 1080
Query: 933 GAPAEMPLALKPKEFPDFMEREDKPR---YISFGVLGKLYRATLDSIMQIRSNAIWSEKI 989
G PA+M L P+++P FME++ KP+ YIS +LGKLY I + K+
Sbjct: 1081 GIPAKMTKDLAPRKWPHFMEKKHKPKDAQYISQKILGKLY--------DIVERVNYRPKL 1132
Query: 990 AEASYDHDLEVDGFEA---FLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRAS 1046
EA +D + G E L VA K +Y+ +M +M + TE E+ + + + S
Sbjct: 1133 -EAPFDDRILNSGIEVNDDLLAVAAELKVLYDADMCRIMAQHEIKTEFEVWSTFVLSH-S 1190
Query: 1047 YLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSCKENEHPQLASAWYHVT--------- 1097
+ +D + + ++ + +N E G E+ P LA A Y VT
Sbjct: 1191 NMSKDYKFHEEIGQISCALRERFRNLCCEKAGGKNFEHLAP-LAVAMYKVTCNEMTQALA 1249
Query: 1098 -----------YSP-SYCKERMALLSFPWIVGDILLNI 1123
SP S +E++ L+SFPW++ +L I
Sbjct: 1250 KIKARYGEDDDQSPWSEHEEKLPLISFPWLLQPVLGKI 1287
>gi|320036523|gb|EFW18462.1| RNA-directed RNA polymerase Rdp1 [Coccidioides posadasii str.
Silveira]
Length = 1444
Score = 381 bits (979), Expect = e-102, Method: Compositional matrix adjust.
Identities = 276/883 (31%), Positives = 439/883 (49%), Gaps = 114/883 (12%)
Query: 300 LSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDP---- 355
L V +QL + + ++ E + L L A +L+ + K + YDP
Sbjct: 412 LPFSVRYQLEVCLSHGFLNEYTIGKEFVTALVALGETKARELLEHVASEKHVYYDPKKIF 471
Query: 356 -VSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCY--RALVTPMKIYCLGPELETSNYV 412
+ FVK + + IP CY A VTP +Y P ++ +N V
Sbjct: 472 DILFVKPAM------SRRIP-----------KYCCYMRTARVTPSTVYFGTPSVDITNRV 514
Query: 413 VKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVI 472
++++ +YA F+RV F +E + + + ++ ++++R+ + +GI +
Sbjct: 515 IRHYIEYADRFLRVRFTDEKFEGRIQPSHNNTMD----------EVFTRVKRTMMNGITL 564
Query: 473 GDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSS 532
GD+HYEFLAF SQ R + + FAS ++A ++R WMG F+ I+ +++ AAR+GQ FS+
Sbjct: 565 GDRHYEFLAFGNSQFREHGAYFFASLPHLTAANIRAWMGHFSDIKEIARHAARLGQCFST 624
Query: 533 SKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQK------CGLSHTP 586
++ PVQ + I D++ N Y FSDG+G+IS A+ V + CG P
Sbjct: 625 TRAVTGCPVQ-IREIEDIQ----RNGYTFSDGVGRISRFLAQMVMTEFKIKTPCG--EPP 677
Query: 587 SAFQIRYGGYKGVIAVDRNSFRK-LSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIIS 645
S FQ R GG KG++ V + R+ + +R+S KF + + L V + S LNR++I
Sbjct: 678 SVFQFRLGGCKGILTVSPEAQRQQVHIRKSQYKFPAIHNGLEVIRHSHFCMASLNRQLIV 737
Query: 646 LLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQK-LNGVDSKNILVKMLLQGYEP 704
+LS+L V DEVF + L L + + A+ +L K ++ +L +M+ G++
Sbjct: 738 VLSSLEVPDEVFLEKLRMMLGNLELAMTSETQAIHLLHKYIDPNQMTLVLAEMIQDGFQS 797
Query: 705 NVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREE 764
+ EP+++ +L Q+ LK + +I + +G L GC DETG L +
Sbjct: 798 SKEPFVTSLLELWRAWQIKYLKEKAKIIIEEGACLFGCLDETGTLK--------GFFHDN 849
Query: 765 LESKDQSFFHRV---------------DDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEM 809
+ SKD S+ R+ D K I++G ++ +NP LHPGD+RV++AV
Sbjct: 850 IPSKDASYEERLACLPEIFVQISRANNDGKYEIIEGPCIIARNPSLHPGDIRVVKAVNAP 909
Query: 810 KLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCE-TEPPMDYTGR-R 867
L D I+FPQ G+R P+ CSGGDLDGD + + WD DL+P + + PM+Y +
Sbjct: 910 ALHH--LRDVIVFPQTGDRDIPSMCSGGDLDGDDYLVIWDQDLLPKDWFKQPMNYAPSVK 967
Query: 868 SRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAV 927
+ + DVT+ +I FFV YM ND L I+ +HL AD SKC+ LA LHS AV
Sbjct: 968 ALRLSRDVTVNDITSFFVTYMKNDRLAQIAHSHLAWADYLEKGVNDSKCIRLAELHSAAV 1027
Query: 928 DFAKTGAPAEMPLALKPKEFPDFMEREDKPR---YISFGVLGKLYRATLDSIMQIRSNAI 984
D+ KTG PA+M L P+++P FME++ KP+ YIS +LGKLY I
Sbjct: 1028 DYNKTGIPAKMTKDLAPRKWPHFMEKKHKPKDAQYISQKILGKLY--------DIVERVN 1079
Query: 985 WSEKIAEASYDHDLEVDGFEA---FLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNL 1041
+ K+ EA +D + G E L VA K +Y+ +M +M + TE E+ + +
Sbjct: 1080 YRPKL-EAPFDDRILNSGIEVNDDLLAVAAELKVLYDADMCRIMAQHEIKTEFEVWSTFV 1138
Query: 1042 RNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSCKENEHPQLASAWYHVT---- 1097
+ S + +D + + ++ + +N E G E+ P LA A Y VT
Sbjct: 1139 LSH-SNMSKDYKFHEEIGQISCALRERFRNLCCEKAGGKNFEHLAP-LAVAMYKVTCNEM 1196
Query: 1098 ----------------YSP-SYCKERMALLSFPWIVGDILLNI 1123
SP S +E++ L+SFPW++ +L I
Sbjct: 1197 TQALAKIMARCGEDDDQSPWSEHEEKLPLISFPWLLQPVLGKI 1239
>gi|242812975|ref|XP_002486072.1| RNA-directed RNA polymerase (Sad-1), putative [Talaromyces stipitatus
ATCC 10500]
gi|218714411|gb|EED13834.1| RNA-directed RNA polymerase (Sad-1), putative [Talaromyces stipitatus
ATCC 10500]
Length = 1341
Score = 381 bits (978), Expect = e-102, Method: Compositional matrix adjust.
Identities = 265/859 (30%), Positives = 442/859 (51%), Gaps = 69/859 (8%)
Query: 295 RPGFNLSHEVLFQLNSLVHNQKVS-LVAADAELIQILSGLSMETALMVLQKLHKLKSICY 353
+P +L + +QL + + +S AA E IQ L + AL +L+ + K + +
Sbjct: 416 KPYIHLPFAIRYQLEVCISHGYISEYTAAKPEFIQRLKDMEERKALALLEHVAMDKKVYW 475
Query: 354 DPVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVV 413
D ++ P + +R I A VTP IY P +E +N V+
Sbjct: 476 DAMNIFDILF----------PRGTTRRNIPSYCCMVRTATVTPSMIYWNTPSMEITNRVL 525
Query: 414 KNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIG 473
+ ++++A F+RV F +E + + ++ +I+SRI + +GIV+G
Sbjct: 526 RRYSEHADRFLRVRFKDEKFEGRINSTHHDTMD----------EIFSRIKRTMTNGIVLG 575
Query: 474 DKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSS 533
D+ YEFLAF SQ R + + FAS+ V+A ++R WMG F+ I++V+K AAR+GQ FS++
Sbjct: 576 DRKYEFLAFGNSQFREHGAYFFASDAHVTASNIRAWMGEFSDIKNVAKYAARLGQCFSTT 635
Query: 534 KQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGL----SHTPSAF 589
+ V+ ++ IPDVE Y FSDG+G+IS A+ Q+ + PSA+
Sbjct: 636 RAINTCRVE-LKRIPDVE----RGPYTFSDGVGRISRFLAQMTQQELNIRTADQEPPSAY 690
Query: 590 QIRYGGYKGVIAV-DRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLS 648
Q R GG KG++ + D R++ +R S KF + ++ L + +WS+ LNR++I++LS
Sbjct: 691 QFRLGGCKGMLVLSDEPRGREIEIRPSQEKFPANHQGLEIIRWSQFSSATLNRQLIAVLS 750
Query: 649 TLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILV-KMLLQGYEPNVE 707
+LG++D+VF Q+ + L + AA+ +LQK + +++ K++ G+ +
Sbjct: 751 SLGIEDKVFHGKLQRMVSNLEEATHYDRAAMHLLQKYIDPNEMTLVISKIVSDGFLQARD 810
Query: 708 PYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGIL---NYGQVFVRVTMTRE- 763
P+++ ++ Q+ LK + +I + G ++G DET L +Y V +V ++R+
Sbjct: 811 PFITSVITLWKAWQIKYLKEKAKITIEDGACVLGVMDETATLKGFSYENV-EKVHLSRDS 869
Query: 764 ELESKDQSFF--HRVDDKT-SIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCI 820
+L++ + F +R D+K +V+G ++ +NP LHPGD+RV+ AV +L D +
Sbjct: 870 KLDALPEIFLQVYRADEKKYGVVEGVCILARNPSLHPGDIRVVRAVNRSELAH--LKDVV 927
Query: 821 IFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCE-TEPPMDYTGRRSRIMDHDVTLEE 879
+ PQ G+R + CSGGDLDGD + + WD DLIP + PMDYT + ++ VT+ +
Sbjct: 928 VLPQVGDRDIASMCSGGDLDGDDYLVIWDQDLIPSQWFRTPMDYTAIKGVNLNRAVTVND 987
Query: 880 IHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMP 939
I FFV+YM ND+L I+ AH+ AD D S+KC+ LA LHS AVD+ KTG PA +P
Sbjct: 988 ITTFFVNYMKNDSLPKIAHAHMAWADYLEDGVESAKCIRLAQLHSNAVDYNKTGEPAYLP 1047
Query: 940 LALKPKEFPDFMEREDKPR---YISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDH 996
L+P+++P FME+ KP+ Y S +LG+LY A + + +++ EA +
Sbjct: 1048 RDLRPRKWPHFMEKNYKPKDQIYHSEKILGQLYDAVDRVDFHPDFDRPFDKRVLEAGIEV 1107
Query: 997 DLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYG 1056
E+ F L V Y+ + +M + TE EI + + A+ L +D + +
Sbjct: 1108 TDEILQFVKELKVD------YDLSLKRIMAQHEIRTEFEIWSTFVLGHAN-LSKDYKFHE 1160
Query: 1057 DMKDRILLSAKNLQNEAKEWFGSSCKENEHPQLASAWYHVTYSPSYC------------- 1103
++ Q E G + P +A A Y VT
Sbjct: 1161 ELGGITKAIKDRFQGECYAKVGGRDFDRIAP-VAVAIYRVTSDEVVTAMGEFRKKNPEAK 1219
Query: 1104 --KERMALLSFPWIVGDIL 1120
E + ++SF W+ D+L
Sbjct: 1220 PNPENLPMISFAWLFPDVL 1238
>gi|358393612|gb|EHK43013.1| hypothetical protein TRIATDRAFT_225118 [Trichoderma atroviride IMI
206040]
Length = 1272
Score = 381 bits (978), Expect = e-102, Method: Compositional matrix adjust.
Identities = 270/872 (30%), Positives = 446/872 (51%), Gaps = 77/872 (8%)
Query: 291 LVKCRPGFNLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKS 350
L+ P +L V FQL + + ++ E +Q L+ L A L+ L +
Sbjct: 357 LLSNTPFVHLDFAVRFQLEVCITRRVLNEHTVSLEFLQKLAALHPLDAKHRLEVLVDQEE 416
Query: 351 ICYDPVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSN 410
+ ++P+ + R IP H + +A VTP + P +ETSN
Sbjct: 417 VVHNPMDIFARRTMAPYRPATRIP---------HYCVLARKATVTPTSLLLSSPAVETSN 467
Query: 411 YVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGI 470
V++ F + F+RV FV+E S R + + +I+ ++L L +GI
Sbjct: 468 RVLRYFNQAQDRFLRVQFVDEAESG-----------RMTMNSHNKEEIWKKLLRTLYEGI 516
Query: 471 VIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLF 530
IGD+ YEFLAF +SQLR + + F D +S +D+R WMG + IR V+K AAR+GQ F
Sbjct: 517 QIGDRRYEFLAFGSSQLRQSGAYFFCPTDHISCQDIRQWMGQVSHIRIVAKYAARLGQCF 576
Query: 531 SSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLS--HTPSA 588
S++++ VP+ DV I D+E N YCF+DG+G IS AR + ++ L + PSA
Sbjct: 577 STTREMKGVPIPDVRPIADIE----RNGYCFTDGVGMISGFMARMIVEELTLEVFNDPSA 632
Query: 589 FQIRYGGYKGVIAV-DRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLL 647
FQ R GG KGV+ V + ++ +R S KF++ + L + K ++ LNR+ I++L
Sbjct: 633 FQFRMGGCKGVLVVWPQAKKSEVYIRESQEKFKADAKNLEIIKCAKYTSATLNRQTITIL 692
Query: 648 STLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQK-LNGVDSKNILVKMLLQGYEPN- 705
LGV + F + ++Q+ L + + A+ +L+K ++ S +L ++L G++
Sbjct: 693 EHLGVPKKAFMDILEKQISLYEEAAKDNRVAVGMLKKCVDENQSTLVLAELLQAGFKTKN 752
Query: 706 -VEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREE 764
EP++ +L L LK + RI + + ++GC DETG L G + ++
Sbjct: 753 CQEPFVVNLLNLWRSWSLKLLKEKARIAIEQSAFVLGCVDETGTLR-GHSNATEGTSDKD 811
Query: 765 LESKDQSFFH----RVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCI 820
+ Q F ++ D T ++KG +V +NP LHPGD+RV+EAV +L D +
Sbjct: 812 VNKLPQIFLQVSDSKIYDTTKVIKGICVVGRNPSLHPGDIRVVEAVDIPELHH--LKDVV 869
Query: 821 IFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCE-TEPPMDYTGRRSRIMDHDVTLEE 879
+FP G+RP PN SGGDLDGD FF+ W+ LIP + P M+Y+ +D DV + +
Sbjct: 870 VFPSTGDRPVPNMLSGGDLDGDDFFVIWEPSLIPEKWNHPAMNYSSPPPPKLDRDVNVND 929
Query: 880 IHKFFVDYMINDTLGAISTAHLVHADR-DPDKARSSKCLHLATLHSMAVDFAKTGAPAEM 938
+ FFV+YM ND L I+TAHL ADR DP S CL LA LHS AVD+ KTG PAE
Sbjct: 930 LRDFFVNYMKNDVLPLIATAHLALADRFDP---ASPICLRLAELHSKAVDYPKTGDPAEF 986
Query: 939 PLAL-KPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHD 997
+ P+ +P FME++ RY S LG +Y + ++ R + W E ++D
Sbjct: 987 NHDMYNPQSWPHFMEKQQ--RYKSARALGAIYDRVIKQTIEFRPD--W-----ENAFDKR 1037
Query: 998 LEVDGFEAFLGVAESHKEM---YEEEMNALMNYYGASTEDEILTGNLRNRAS----YLQR 1050
+ ++ ++ G+ +S +++ Y+ + +++++ TE E+ T + + Y ++
Sbjct: 1038 I-LNRYQLDTGMLKSARQIKGQYDAAVRRILSHHNLGTEFELYTSWAMTKPAIGSDYKRQ 1096
Query: 1051 D--NRRYGDMKDR---ILLSAKNLQNEAK-EWFGSSCKENEHPQLASAWY---------- 1094
+ R + +KDR + A ++E K + F ++ + ++A A +
Sbjct: 1097 EELGREFDAIKDRFRGLCFEAAGGRDEDKIDIFVAAMYKITEQEIAIALFEHRRGATNEA 1156
Query: 1095 -HVTYSPSYCKERMALLSFPWIVGDILLNIKS 1125
++ + + M L+SFPWI +++ + S
Sbjct: 1157 SNLIPARKLETKSMPLISFPWIFPWVMIRVAS 1188
>gi|303313157|ref|XP_003066590.1| RNA-directed RNA polymerase, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240106252|gb|EER24445.1| RNA-directed RNA polymerase, putative [Coccidioides posadasii C735
delta SOWgp]
Length = 1445
Score = 380 bits (975), Expect = e-102, Method: Compositional matrix adjust.
Identities = 275/878 (31%), Positives = 436/878 (49%), Gaps = 104/878 (11%)
Query: 300 LSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSFV 359
L V +QL + + ++ E + L L A +L+ + K + YDP
Sbjct: 413 LPFTVRYQLEVCLSHGFLNEYTIGKEFVTALVALGETKARELLEHVASEKHVYYDPKKIF 472
Query: 360 KTQLHVLGRNCKSIPLSSHKRLIDHNVMSCY--RALVTPMKIYCLGPELETSNYVVKNFA 417
L V + IP CY A VTP +Y P ++ +N V++++
Sbjct: 473 DI-LFVKPATSRRIP-----------KYCCYMRTARVTPSTVYFGTPSVDITNRVIRHYI 520
Query: 418 KYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHY 477
+YA F+RV F +E + + + ++ ++++R+ + +GI +GD+HY
Sbjct: 521 EYADRFLRVRFTDEKFEGRIQPSHNNTMD----------EVFTRVKRTMMNGITLGDRHY 570
Query: 478 EFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTL 537
EFLAF SQ R + + FAS ++A ++R WMG F+ I+ +++ AAR+GQ FS+++
Sbjct: 571 EFLAFGNSQFREHGAYFFASLPHLTAANIRAWMGHFSDIKEIARHAARLGQCFSTTRAVT 630
Query: 538 VVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQK------CGLSHTPSAFQI 591
PVQ + I D++ N Y FSDG+G+IS A+ V + CG PS FQ
Sbjct: 631 GCPVQ-IREIEDIQ----RNGYTFSDGVGRISRFLAQMVMTEFKIKTPCG--EPPSVFQF 683
Query: 592 RYGGYKGVIAVDRNSFRK-LSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTL 650
R GG KG++ V + R+ + +R+S KF + + L V + S LNR++I +LS+L
Sbjct: 684 RLGGCKGILTVSPEAQRQQVHIRKSQYKFPAIHNGLEVIRHSHFCMASLNRQLIVVLSSL 743
Query: 651 GVKDEVFEAMQQQQLILLGKMLINREAALDVLQK-LNGVDSKNILVKMLLQGYEPNVEPY 709
V DEVF + L L + + A+ +L K ++ +L +M+ G++ + EP+
Sbjct: 744 EVPDEVFLEKLRMMLGNLELAMTSETQAIHLLYKYIDPNQMTLVLAEMIQDGFQSSKEPF 803
Query: 710 LSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKD 769
++ +L Q+ LK + +I + +G L GC DETG L + + SKD
Sbjct: 804 VTSLLELWRAWQIKYLKEKAKIIIEEGACLFGCLDETGTLK--------GFFHDNIPSKD 855
Query: 770 QSFFHRV---------------DDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEK 814
S+ R+ D K I++G ++ +NP LHPGD+RV++AV L
Sbjct: 856 ASYEERLACLPEIFVQISRANNDGKYEIIEGPCIIARNPSLHPGDIRVVKAVNAPALHH- 914
Query: 815 DYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCE-TEPPMDYTGR-RSRIMD 872
D I+FPQ G+R P+ CSGGDLDGD + + WD DL+P + + PM+Y ++ +
Sbjct: 915 -LRDVIVFPQTGDRDIPSMCSGGDLDGDDYLVIWDQDLLPKDWFKQPMNYAPSVKALRLS 973
Query: 873 HDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKT 932
DVT+ +I FFV YM ND L I+ +HL AD SKC+ LA LHS AVD+ KT
Sbjct: 974 RDVTVNDITSFFVTYMKNDRLAQIAHSHLAWADYLEKGVNDSKCIRLAELHSAAVDYNKT 1033
Query: 933 GAPAEMPLALKPKEFPDFMEREDKPR---YISFGVLGKLYRATLDSIMQIRSNAIWSEKI 989
G PA+M L P+++P FME++ KP+ YIS +LGKLY I + K+
Sbjct: 1034 GIPAKMTKDLAPRKWPHFMEKKHKPKDAQYISQKILGKLY--------DIVERVNYRPKL 1085
Query: 990 AEASYDHDLEVDGFEA---FLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRAS 1046
EA +D + G E L VA K +Y+ +M +M + TE E+ + + + S
Sbjct: 1086 -EAPFDDRILNSGIEVNDDLLAVAAELKVLYDADMCRIMAQHEIKTEFEVWSTFVLSH-S 1143
Query: 1047 YLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSCKENEHPQLASAWYHVT--------- 1097
+ +D + + ++ + +N E G E+ P LA A Y VT
Sbjct: 1144 NMSKDYKFHEEIGQISCALRERFRNLCCEKAGGKNFEHLAP-LAVAMYKVTCNEMTQALA 1202
Query: 1098 -----------YSP-SYCKERMALLSFPWIVGDILLNI 1123
SP S +E++ L+SFPW++ +L I
Sbjct: 1203 KIMARCGEDDDQSPWSEHEEKLPLISFPWLLQPVLGKI 1240
>gi|258573507|ref|XP_002540935.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237901201|gb|EEP75602.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 1521
Score = 377 bits (969), Expect = e-101, Method: Compositional matrix adjust.
Identities = 275/880 (31%), Positives = 441/880 (50%), Gaps = 107/880 (12%)
Query: 300 LSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSFV 359
L + V +QL + + +S + L+ L A +L+ + K + YDP+
Sbjct: 492 LPYSVRYQLEVCLSHGLLSEYTIGKDFTTTLAALGETNARELLEHVAGEKLVYYDPMKIF 551
Query: 360 KTQLHVLGRNCKSIPLSSHKRLIDHNVMSCY--RALVTPMKIYCLGPELETSNYVVKNFA 417
L V + IP CY A VTP +Y P ++ SN V++++
Sbjct: 552 DI-LFVKPATSRRIP-----------KYCCYMRTARVTPSTVYFNTPSVDISNRVIRHYI 599
Query: 418 KYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHY 477
+YA F+RV F +E + + + + ++ ++++RI + +GI +GD+HY
Sbjct: 600 EYADRFLRVRFTDERFEGRISPSHNNTMD----------EVFTRIKRAMMNGITLGDRHY 649
Query: 478 EFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTL 537
EFLAF SQ R + + FAS ++A ++R WMG F+ I+ +++ AAR+GQ FS+++
Sbjct: 650 EFLAFGNSQFREHGAYFFASLPHLTASNIRAWMGHFSDIKEIARHAARLGQCFSTTRAVT 709
Query: 538 VVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFAR------QVAQKCGLSHTPSAFQI 591
PVQ + I D+E N + FSDG+G+IS A+ ++ CG PS FQ
Sbjct: 710 GCPVQ-IREIEDIE----RNGHTFSDGVGRISRFLAQMIMTEFKIKTPCG--EPPSVFQF 762
Query: 592 RYGGYKGVIAVDRNSFRK-LSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTL 650
R GG KG++ V + R+ + +R+S KF + + L V + S LNR++I +LS L
Sbjct: 763 RLGGCKGILTVSPEAQRREVHIRKSQYKFPAIHNGLEVIRHSHFSMASLNRQLIVVLSAL 822
Query: 651 GVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKN---ILVKMLLQGYEPNVE 707
V DE+F + L L + + A+ +L K VD +L +M+ G++ + E
Sbjct: 823 EVPDEIFIEKLRVMLENLELAMSSEAQAIHLLHKY--VDPNQMTLVLAEMVQDGFQASKE 880
Query: 708 PYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILN---YGQVFVRVTMTREE 764
P+++ +L Q+ LK + +I + G L GC DETG L ++ E+
Sbjct: 881 PFVTSLLELWRAWQIKYLKEKAKIIIEDGACLFGCLDETGTLKGFFNDKIPAANASYEEK 940
Query: 765 LESKDQSFFH--RVDD--KTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCI 820
LES + F R D+ K +++G +V +NP LHPGD+RV++AV L D +
Sbjct: 941 LESLPEVFVQISRADNGGKYEVIEGPCIVARNPSLHPGDIRVVKAVNVPALHH--LKDVV 998
Query: 821 IFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCE-TEPPMDYT-GRRSRIMDHDVTLE 878
+FPQ G++ P+ CSGGDLDGD + I WD DL+P PMDY ++ + DVT+
Sbjct: 999 VFPQTGDKDVPSMCSGGDLDGDDYLIIWDQDLLPKNWFRQPMDYVPSTKAHCLSRDVTVN 1058
Query: 879 EIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEM 938
+I FFV YM ND L I+ AHL AD KC+ LA LHS AVD+ KTG PA+M
Sbjct: 1059 DITSFFVTYMKNDRLPQIALAHLAWADYLERGVNDPKCMQLAELHSAAVDYNKTGIPAKM 1118
Query: 939 PLALKPKEFPDFMEREDKPR---YISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYD 995
L P+++P FME++ KP+ YIS +LG+LY D + ++ + K+ EA +D
Sbjct: 1119 TKDLIPRKWPHFMEKKHKPKEAQYISQKILGQLY----DRLERVD----YRPKL-EADFD 1169
Query: 996 HDLEVDGFEA---FLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDN 1052
+ G E L +A K +Y+ +M +M + +TE E+ + + + A+ + +D
Sbjct: 1170 ERILSSGIETSDDLLAMATELKTLYDADMRRIMAQHEINTEFEVWSTFVLSHAN-MSKDY 1228
Query: 1053 RRYGDMKDRILLSAKNLQNEAKEWFGSSC------KENEH-PQLASAWYHVT-------- 1097
+ + ++ + + +E F C K+ EH LA A Y VT
Sbjct: 1229 KFHEEI--------GQIASALRERFRVLCFEKAGGKDFEHLAPLAVAMYKVTCNEMTQAL 1280
Query: 1098 ------YSPSYC--------KERMALLSFPWIVGDILLNI 1123
YS +E++ +SFPW++ +L I
Sbjct: 1281 AASKARYSDETGIQSVSIKHEEKLPFISFPWVLQPVLGKI 1320
>gi|425783248|gb|EKV21105.1| RNA-directed RNA polymerase (Sad-1), putative [Penicillium digitatum
Pd1]
Length = 1347
Score = 377 bits (968), Expect = e-101, Method: Compositional matrix adjust.
Identities = 276/881 (31%), Positives = 432/881 (49%), Gaps = 89/881 (10%)
Query: 298 FNLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVS 357
+L +V +QL + +S + E ++ + L + A +L+ + K DP+
Sbjct: 380 IHLPFKVRYQLEVCLSQGYLSEFSMSREFVEKVKDLGDDQATRLLEFVATEKKQYLDPME 439
Query: 358 FVKTQLHVLGRNCKSIPLSSHKRLIDHNVMS--CY--RALVTPMKIYCLGPELETSNYVV 413
L KR+ D + S C+ A VTP IY P ++ SN VV
Sbjct: 440 IFD--------------LKFFKRVTDSKIPSYCCFMHTARVTPTTIYYNTPTVDISNRVV 485
Query: 414 KNFAKYASD--FMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIV 471
+ ++ ++ F+RV F +E +L S +IY+R+ L +GI
Sbjct: 486 REWSTKSAPGRFLRVRFTDERTEGRINASLGDS----------NDEIYTRVKRTLANGIS 535
Query: 472 IGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFS 531
IGD+HYEFLAF SQ R + + FA + VSA +R WMG FN IR+V+K AAR+GQ FS
Sbjct: 536 IGDRHYEFLAFGNSQFREHGAYFFAPDAGVSAATIRAWMGQFNHIRNVAKYAARLGQCFS 595
Query: 532 SSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGL----SHTPS 587
+++ VQ V DV N + FSDG+GK+S A+ V + + +PS
Sbjct: 596 TTRAFTGSSVQ-VATCNDVV----RNGFTFSDGVGKVSKFLAQMVTSQHNIKTLTGESPS 650
Query: 588 AFQIRYGGYKGVIAVDRNSF-RKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISL 646
AFQ R GG KG++ V + +++ +R S KFE+ L + +WS+ LNR++I +
Sbjct: 651 AFQFRLGGAKGMLVVSPDPMPQEVHIRPSQQKFETTQAGLEIIRWSQYSLATLNRQLILV 710
Query: 647 LSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQK-LNGVDSKNILVKMLLQGYEPN 705
LS LG+ D+VF + L +++ N A+++LQK ++ + IL +M+ G+ N
Sbjct: 711 LSALGIPDKVFHSKLNSMLGSFHRVMCNDSKAINLLQKYIDPNQTTLILAQMVSDGFRQN 770
Query: 706 VEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTR--- 762
EP+ + ML L LK + +I + +G L+G DETG+L + + + T+ R
Sbjct: 771 EEPFANTMLELWKSWHLKHLKEKAKIAIDQGANLLGVMDETGVL---KGYFKNTLPRRGA 827
Query: 763 ---EELESKDQSFFH----RVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKD 815
++L + + F + + +++G ++ +NP LHPGD+RV+ AV +L K
Sbjct: 828 SYAQKLAALPEIFVQICRLEGNGEYEVIEGLCILARNPSLHPGDIRVVRAVNRPEL--KG 885
Query: 816 YVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCE-TEPPMDYTGRRSRIMDHD 874
D ++ PQ G++ + CSGGDLDGD + I WD DLIP MDY G ++ +DHD
Sbjct: 886 LRDVVVLPQTGDQDIASMCSGGDLDGDDYLIIWDPDLIPTRWFVECMDYKGSKAPDLDHD 945
Query: 875 VTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGA 934
VT++EI FFV YM ND L I+ AHL ADR P KC+ LA LHS AVD+ K+GA
Sbjct: 946 VTVDEITSFFVTYMKNDCLPRIAHAHLAWADRLPRGVWEEKCIRLAQLHSDAVDYNKSGA 1005
Query: 935 PAEMPLALKPKEFPDFME-REDKPR--YISFGVLGKLYRATLDSIMQIRSNAIWSEKIAE 991
A M +L PK +P FME R +P Y S +LG+LY A + + + +I E
Sbjct: 1006 HARMARSLDPKFWPHFMEKRFKRPSSIYKSTKILGQLYDAVVTPNFVPKLGKPFDSRILE 1065
Query: 992 ASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRD 1051
+ E ++ A K ++ M +M Y +TE E+ + R ++ RD
Sbjct: 1066 SPL-----ASASETYIEYARELKAEFDMNMRQIMAQYEINTEFEVWS-TFVLRHGFVIRD 1119
Query: 1052 NRRYGDMKDRILLSAKNLQNEAKEWFGSSCKENEHPQLASAWYHVTYSP----------- 1100
+ D+ + + +++ + G L A Y VT
Sbjct: 1120 YKMQEDLGRIVGTLRRGFRHQCYDKVGRHG--GNISALVIAMYRVTQEQVAAALEAQRKE 1177
Query: 1101 ----------SYCKERMALLSFPWIVGDILLNIKSVNSRKA 1131
+ L+SFPWI D+L ++ + +R+A
Sbjct: 1178 ALQREDLSVVEVSSTELPLISFPWIFPDVLGDVATGRAREA 1218
>gi|255944161|ref|XP_002562848.1| Pc20g02950 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587583|emb|CAP85624.1| Pc20g02950 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1368
Score = 377 bits (968), Expect = e-101, Method: Compositional matrix adjust.
Identities = 273/878 (31%), Positives = 428/878 (48%), Gaps = 83/878 (9%)
Query: 298 FNLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVS 357
+L +V +QL + +S E I+ L GL + A +L+
Sbjct: 385 LHLPFKVRYQLEVCLSQGYLSEFTMTREFIETLKGLGDDQATRLLE-------------- 430
Query: 358 FVKTQLHVLGRNCKSIPLSSHKRLIDHNVMS--CY--RALVTPMKIYCLGPELETSNYVV 413
FV T+ + L K + D + + C+ A +TP IY P ++ SN VV
Sbjct: 431 FVATEKKQYLAPMEIFDLKFFKGVTDSRIPNYCCFMRTARITPTTIYYNTPTVDISNRVV 490
Query: 414 KNFAKYASD--FMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIV 471
+ ++ + F+RV F +E + QRG ++Y+R+ L +GI
Sbjct: 491 REWSTKGTPGRFLRVRFTDEK-----TEGRINASQRGC-----NDEVYTRVKRTLANGIA 540
Query: 472 IGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFS 531
IGD+HYEFLAF SQ R + + A + +SA +R WMG FN IR+V+K AR+GQ FS
Sbjct: 541 IGDRHYEFLAFGNSQFREHGAYFVAPDAGISAGTIRAWMGQFNHIRNVAKYTARLGQCFS 600
Query: 532 SSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQ----KCGLSHTPS 587
+++ V+ IP ++ +G + FSDG+GKIS A+ V K PS
Sbjct: 601 TTR---AFTGSSVQTIPCDDIIRNG--FTFSDGVGKISKFLAQMVTSQHDIKTLTGEPPS 655
Query: 588 AFQIRYGGYKGVIAVDRNSF-RKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISL 646
AFQ R GG KG++ V + +++ +R S KFE+ L + +WS+ LNR+II +
Sbjct: 656 AFQFRLGGAKGMLVVSTDPLPQEVHIRPSQQKFETSQAGLEIIRWSQYSLATLNRQIILV 715
Query: 647 LSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNI-LVKMLLQGYEPN 705
LS LG+ DEVF + L + ++N A+++LQK + + L +M+ G+ N
Sbjct: 716 LSALGIPDEVFHSKLNTMLGSFHRAMLNDSKAINLLQKYIDPNQMTLTLAQMVSDGFRRN 775
Query: 706 VEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILN---YGQVFVRVTMTR 762
EP+++ ML L LK + +I + +G ++G DETG+L ++ R
Sbjct: 776 EEPFVNTMLELWKSWHLKHLKEKAKIAIDQGANVLGVMDETGVLKGYFRKELPSRRASYA 835
Query: 763 EELESKDQSFFH--RVDD--KTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVD 818
E+L + + F R+D + +++G ++ +NP LHPGD+RV+ AV +L D
Sbjct: 836 EKLAALPEIFVQVCRLDGGGEYEVIEGLCILARNPSLHPGDIRVVRAVNRSELHA--LRD 893
Query: 819 CIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCE-TEPPMDYTGRRSRIMDHDVTL 877
++ PQ G++ + CSGGDLDGD + + WD +LIP MDY G ++ +DHDVT+
Sbjct: 894 VVVLPQTGDQDIASMCSGGDLDGDDYLVIWDPNLIPANWFVECMDYKGSKAPDLDHDVTV 953
Query: 878 EEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAE 937
+EI FFV YM ND L I+ AHL ADR P KC+ LA LHS AVD+ K+GA A
Sbjct: 954 DEITSFFVTYMKNDCLPRIAHAHLAWADRLPRGVWEDKCIRLAQLHSDAVDYNKSGAHAR 1013
Query: 938 MPLALKPKEFPDFME-REDKPR--YISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASY 994
M +L PK +P FME R +P Y S +LG+LY A + + + +I E+
Sbjct: 1014 MARSLDPKFWPHFMEKRFKRPSSIYKSTKILGQLYDAVITPDFVPKLEKPFDSRILESPL 1073
Query: 995 DHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNRR 1054
EA++ A K ++ M +M Y +TE E+ + R ++ +D +
Sbjct: 1074 -----APASEAYMEYARELKAEFDMNMRQIMAQYEINTEFEVWS-TFVLRHGFVIKDYKM 1127
Query: 1055 YGDMKDRILLSAKNLQNEAKEWFGSSCKENEHPQLASAWYHVTYS--------------- 1099
D+ + + +++ + G P L A Y VT
Sbjct: 1128 QEDLGRIVGTLRRGFRHQCYDKVGRDG--GNIPALVIAMYRVTQEQVAAALEARRNEALQ 1185
Query: 1100 ------PSYCKERMALLSFPWIVGDILLNIKSVNSRKA 1131
+ L+SFPWI D+L ++ + +R+A
Sbjct: 1186 REDVSIAEVNSTELPLISFPWIFPDVLGDVATGRARQA 1223
>gi|156035913|ref|XP_001586068.1| hypothetical protein SS1G_13161 [Sclerotinia sclerotiorum 1980]
gi|154698565|gb|EDN98303.1| hypothetical protein SS1G_13161 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1404
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 257/755 (34%), Positives = 388/755 (51%), Gaps = 55/755 (7%)
Query: 243 CSTSFFWEIKNGLLASDISNIF-------PFYKEDKTDLILEEGEEFCTTSEIVPLVKCR 295
C+ F +++ LL +I I P K + LI G T++I R
Sbjct: 303 CAPDEFHKVQKALLDFNIEIITLDNFRLKPMRKAELWSLIDPRGAR-SATADIHSPNSGR 361
Query: 296 PGFNLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKL-----KS 350
L EV +QL + + ++ D + I L+ ++ + L +
Sbjct: 362 VTVPLPFEVRYQLEVCISREIINEYNIDEKFIYSLAKVAAQDPAKARNLLEYVAENYSSK 421
Query: 351 ICYDPVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSN 410
Y+P S N ++ SS I H +A VTP IY P +ET+N
Sbjct: 422 RLYNPSSIFT--------NNDALSFSSMTD-IPHYCAFSRKATVTPSSIYFSSPTVETTN 472
Query: 411 YVVKNFAKYASD--FMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQD 468
V++N++K + F+RV F +E ++ NA + I+ +++R+ ++ +
Sbjct: 473 RVLRNYSKENKEGRFLRVQFTDEK-AEGRINACADKIRND--------GLFTRVFRVISN 523
Query: 469 GIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQ 528
GI IGD+HYEFLAF SQ R N + F +S +D+R WMG F+ I V+K AAR+GQ
Sbjct: 524 GIRIGDRHYEFLAFGNSQFRENGAYFFCPPAYLSCDDIRQWMGTFSHINVVAKYAARLGQ 583
Query: 529 LFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGL--SHTP 586
FS+++ + D+ IPD+E N YCF+DG+GKIS A+ +A++ L + P
Sbjct: 584 CFSTTRAIRGLSAPDLVKIPDIE----RNGYCFTDGVGKISPFLAQMIAEELKLRTNSAP 639
Query: 587 SAFQIRYGGYKGVIAVDRNS-FRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIIS 645
SAFQ R GG KG++ V ++ ++ +R+S KF + L + + S+ LNR+ I+
Sbjct: 640 SAFQFRLGGCKGILVVSPDAKNNEVHIRKSQQKFTAVYNGLEIIRCSQFSSATLNRQTIT 699
Query: 646 LLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNI-LVKMLLQGYEP 704
+LS+LGVKDEVF M +QL + N AL++L + + I + M+L G+
Sbjct: 700 ILSSLGVKDEVFLNMLSEQLSDYQNAMSNNTIALNLLNRYIDDNYMTINIASMILNGFMT 759
Query: 705 NVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGIL-NYGQVFVRVTMTRE 763
EP++ +L + LK + +I V G ++GC DET L Y + V T +
Sbjct: 760 EKEPFVLSLLHLWRAWSIKLLKEKAKIIVENGAFVLGCVDETNTLRGYTKPTVACGTTYK 819
Query: 764 ELESKDQSFFHRVDDKT-----SIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVD 818
E E F +V ++ ++++G LV +NP LHPGD+RV++AV L D
Sbjct: 820 EDELP--QIFIQVPNRENTGQYNVIEGICLVGRNPSLHPGDLRVVQAVNVPALHH--LRD 875
Query: 819 CIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETE-PPMDYTGRRSRIMDHDVTL 877
++FPQ GER P+ CSGGDLDGD FF+ WD +L P E PM Y + V +
Sbjct: 876 VVVFPQSGERDVPSMCSGGDLDGDDFFVIWDKNLQPSEWNCEPMSYAALAPVTLKRPVKV 935
Query: 878 EEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAE 937
++ KFFV YM ND+L I+ AHL AD + + KCL LA LHS AVD+ KTG PA
Sbjct: 936 RDLLKFFVKYMKNDSLPTIAHAHLAQADLLGNGIKDPKCLELAELHSKAVDYVKTGQPAN 995
Query: 938 MPLALKPKEFPDFMEREDKP---RYISFGVLGKLY 969
M L P+++P FME+ KP +Y S +LG+LY
Sbjct: 996 MSRYLAPQKWPHFMEKTHKPLSKQYHSTKILGQLY 1030
>gi|451997457|gb|EMD89922.1| hypothetical protein COCHEDRAFT_1138647 [Cochliobolus heterostrophus
C5]
Length = 1228
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 251/759 (33%), Positives = 391/759 (51%), Gaps = 64/759 (8%)
Query: 299 NLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSF 358
+LS V +QL + N + ++ L L + A+ +L+K+ + I YDP+
Sbjct: 314 HLSFPVRYQLEVCLSNGYIKEHNITIGFLKKLEALESQQAVHILEKVADRQKIYYDPMEI 373
Query: 359 VKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAK 418
IP+ KR + + +TP ++ P +ETSN +++ +
Sbjct: 374 F------------DIPIKGIKRKMPSYCLLQRSVTITPTMMHVATPVMETSNRIIRKYEA 421
Query: 419 YASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYE 478
A F+RV F +E N + + ++ R+ +++GIV+ ++YE
Sbjct: 422 DADRFIRVRFTDEKNEGQLRNQPNGRAE----------AVFDRVFRAMKNGIVVAGRYYE 471
Query: 479 FLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLV 538
FLAF SQ R N + +A SA D+R +G F+ I++VSK AAR+GQ FS+++ V
Sbjct: 472 FLAFGNSQFRENGAYFYAPTSSKSANDIRISLGEFDHIKTVSKFAARLGQCFSTTRAMGV 531
Query: 539 VPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHT----PSAFQIRYG 594
++ PD N + F+DG+GK+S A+ AQ+ GL++ PS FQ R G
Sbjct: 532 T--VELTTTPD----KKHNNFIFTDGVGKLSPFLAQMAAQELGLANAFTDPPSLFQFRLG 585
Query: 595 GYKGVIAVDRNSFR-KLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVK 653
G KGV+A+D R ++ +R S KF + L + + S + NR+II +LS LGV+
Sbjct: 586 GSKGVLALDPKLKRNQVKIRPSQYKFRAPYTGLEIIRSSSFATPYFNRQIILVLSYLGVQ 645
Query: 654 DEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNI-LVKMLLQGYEPNVEPYLSM 712
D VF Q+ + + + + AL L+K ++ + + M+L G+ + EP++
Sbjct: 646 DAVFLRKQEDMMNDYSRAMADETTALQKLRKNIDINQTTLTMAAMVLDGFMGSREPFIMS 705
Query: 713 MLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGIL--NYGQVFVRVTMTREELESKDQ 770
+L + +LK + RI + G L+GC DET L ++ R TR+E +
Sbjct: 706 LLALWRACTIKNLKEKARIAIDNGAFLLGCVDETKKLKGHFNDPQSRRDATRDEKLATLP 765
Query: 771 SFFHRVDDKTS-----IVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYV-DCIIFPQ 824
F +V D S I++G +V +NP LHPGDVRV+ AV +EE ++ + ++FPQ
Sbjct: 766 EIFLQVSDPNSKGHYIIIEGICIVARNPSLHPGDVRVVRAV---NVEELHHLKNVVVFPQ 822
Query: 825 KGERPHPNECSGGDLDGDIFFISWDNDLIPCE-TEPPMDYTGRRSRIMDHDVTLEEIHKF 883
G+R N CSGGDLDGD + + WD DL+P EPPMD+T ++ +D ++ ++ +F
Sbjct: 823 TGDRDLANMCSGGDLDGDDYMVLWDTDLLPERINEPPMDFTPEKAVEIDGPISALDMARF 882
Query: 884 FVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALK 943
FV+Y+ ND LG I+ AHL AD + + CL LA LHS AVDF K+G PAEM L+
Sbjct: 883 FVNYIKNDALGPIAHAHLAQADFNENGVGDPICLELAELHSRAVDFPKSGIPAEMKRELR 942
Query: 944 PKEFPDFMERE---DKPRYISFGVLGKLYRATLDSIMQIRSNAIW----SEKIAEASYDH 996
PK++P FME++ Y S +LG LY D + I W ++I EA +D
Sbjct: 943 PKKWPHFMEKKYLSQHQIYKSKKILGLLY----DEVKLIDFEPQWENPFDKRILEA-FDL 997
Query: 997 DLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDE 1035
D E+ L A S K Y+E + LM +G TE E
Sbjct: 998 DQEL------LDKAASLKLSYDEALRRLMAKHGIKTEFE 1030
>gi|46128677|ref|XP_388892.1| hypothetical protein FG08716.1 [Gibberella zeae PH-1]
Length = 1295
Score = 375 bits (962), Expect = e-100, Method: Compositional matrix adjust.
Identities = 274/856 (32%), Positives = 417/856 (48%), Gaps = 68/856 (7%)
Query: 300 LSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQ-----KLHKLKSICYD 354
L EV +QL + +++ E + L+ + A L+ L D
Sbjct: 399 LPFEVRYQLEVCISQGQLNEHKITKEFLDKLASMPSHRAKEYLEFAAERVLKDGHPTTID 458
Query: 355 PVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVK 414
P+S +Q G N KSI I RA++TP + P +E SN V++
Sbjct: 459 PMSTFDSQRDS-GDNYKSI------SRIPQYCGLVRRAVITPTTVRYSTPNIEVSNRVMR 511
Query: 415 NFAKYASDFMRVTFVEEDWSKLPANALSTSIQRG--IFSKPYRTKIYSRILTILQDGIVI 472
F F+R+ F EE +++G +K +IY RIL + +GI I
Sbjct: 512 RFRHIQDRFLRIQFTEE-------------MEKGKITVNKDQNDEIYKRILRTMYEGIRI 558
Query: 473 GDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSS 532
GD+ YEFLAF SQLR+N + F + VS +D+R WMG F+ I+ V+K AAR+GQ FS+
Sbjct: 559 GDRLYEFLAFGNSQLRSNGAYFFCPTEYVSCDDIRQWMGQFSHIKVVAKYAARLGQCFST 618
Query: 533 SKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLS--HTPSAFQ 590
++ + + IPDVE N YCF+DG+GKIS+ A+ V + + PSAFQ
Sbjct: 619 TRDVRGISSPNCLQIPDVE----RNGYCFTDGVGKISVFLAKLVGEDMAIDICADPSAFQ 674
Query: 591 IRYGGYKGVIAV--DRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLS 648
R GG KGV+AV + ++ +R S KFES ++ L + +W+ LN + I +L
Sbjct: 675 FRMGGCKGVLAVWPEDAKGTEVHVRESQKKFESDSKGLEIIRWARYATATLNLQTILILE 734
Query: 649 TLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQG---YEPN 705
LGV + F + QQL + + + A+++L++ + + LL+ E
Sbjct: 735 CLGVPIKSFTTLLDQQLKQYELAMRDNDVAIEMLERFRDEQHNHSCLADLLRADFKTETF 794
Query: 706 VEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREEL 765
EP++ ++ + LK + RI+VPK ++GC DETG L G F +++
Sbjct: 795 QEPFVVNVINLWQSWSIKSLKEKARIHVPKSAFVLGCVDETGTLR-GHSFDTEGSKEKDV 853
Query: 766 ESKDQSFFHRVD----DKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCII 821
Q F D +KTSI++G +V +NP LHPGD+RV+EAV L D ++
Sbjct: 854 HRLPQIFLQISDPKKYNKTSIIRGPCVVGRNPSLHPGDIRVVEAVDCKALHH--LTDVVV 911
Query: 822 FPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCE-TEPPMDYTGRRSRIMDHDVTLEEI 880
FP G+RP PN SGGDLDGD FF+ WD L+P E PPM+Y+ + DV ++++
Sbjct: 912 FPSTGDRPVPNMLSGGDLDGDDFFVIWDPSLMPSEWNHPPMNYSPLDPIELKRDVNVDDL 971
Query: 881 HKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPL 940
FFV Y+ ND L I+ +H AD K SSKCL LA LHS AVD+ KTG PA +
Sbjct: 972 RNFFVKYLKNDKLPLIAMSHRAFADELGPK--SSKCLELAELHSKAVDYPKTGNPAVLRQ 1029
Query: 941 ALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEV 1000
+P+++P +ME+ + Y S LG +Y ++ N +W ++ + E+
Sbjct: 1030 DQQPRKWPHWMEK--RHSYHSRKALGVIYDKVAHK--KVEFNPVW-DRPFDKRITKRFEL 1084
Query: 1001 DGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKD 1060
D LGVA K Y+ + +++ TE E+ T R + + D + D+
Sbjct: 1085 DN--ETLGVARKIKAEYDTAVRRILSQNSLKTEFELFTSFPLTRPA-VGSDYKFAEDLSC 1141
Query: 1061 RILLSAKNLQNEAKEWFGSSCKENEHPQLASAWYHVTYSPSYCKE-----------RMAL 1109
++ Q+ + G E P +A A Y VT +E M L
Sbjct: 1142 EFRSIKEHYQDVCIKAAGGKDAEKLEPFVA-AMYTVTEEQIKNEESILQPQGLEPKSMPL 1200
Query: 1110 LSFPWIVGDILLNIKS 1125
+SFPWI ++ I +
Sbjct: 1201 ISFPWIFHGVMCRIAT 1216
>gi|345566166|gb|EGX49112.1| hypothetical protein AOL_s00079g66 [Arthrobotrys oligospora ATCC
24927]
Length = 1475
Score = 375 bits (962), Expect = e-100, Method: Compositional matrix adjust.
Identities = 284/878 (32%), Positives = 442/878 (50%), Gaps = 104/878 (11%)
Query: 299 NLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMET---ALMVLQKLHKLKSICYDP 355
+L++ + +QL + + VS E I L + A+ +L+ + YDP
Sbjct: 525 SLTYPLRYQLEACISQGCVSEYNVSKEFIDELIAIEEREPNLAVRILETVVDSGKRYYDP 584
Query: 356 VSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKN 415
+ + + R+ IP + +A +TP IY P +ETS V+++
Sbjct: 585 MEILDIKPER--RSTAQIP---------KYCVETRKATITPTMIYYANPVVETSYRVIRH 633
Query: 416 FAKYASDFMRVTFVEEDW-SKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGD 474
F + F+RV F +E K+ A L TS ++++R+ L +GI IGD
Sbjct: 634 FFNHKDRFLRVQFTDEKLHGKISATELDTS-----------HELFTRVSKALNNGIKIGD 682
Query: 475 KHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSK 534
+H++FLAF SQLR + + FA +++ +D+R WMG F KI+ V+K +AR GQ FS+++
Sbjct: 683 RHFQFLAFGNSQLRQHGAYFFADGPDLTCDDIRKWMGKFEKIKVVAKFSARYGQCFSTTR 742
Query: 535 QTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGL---SHTPSAFQI 591
V+D+ IPDVE N +CF+DG G IS S A+ +A + + S P AFQ
Sbjct: 743 AMNGFKVKDI-TIPDVER----NGFCFTDGCGTISSSAAQLIAAEYRIPRESPLPCAFQF 797
Query: 592 RYGGYKGVIAVDRNSFR--------KLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREI 643
R GG KGV+ VD N + ++ +R S KF++ + L + ++S+ LNR++
Sbjct: 798 RLGGCKGVLVVDPNIKKVETGEAGFQVCIRPSQRKFDADHNSLEIIRYSDFSVATLNRQL 857
Query: 644 ISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQ-GY 702
I +LS LG++D VF QL L + ++EAA +L K + I + LL G+
Sbjct: 858 IQVLSDLGLEDTVFLDKLHSQLRDLNLAMEDKEAARKILMKNVDANGGTIQIAGLLSDGF 917
Query: 703 EPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGIL--NYGQVFVRVTM 760
+ EP++ +L + LK + RI + G L+G DETGIL ++ + +
Sbjct: 918 MTSQEPFVQCLLHLWRAWSIKMLKEKARITIENGCFLLGVVDETGILKGHFDKEHEELKK 977
Query: 761 TREELESKD----QSFFHRVDDKTS-----IVKGKVLVTKNPCLHPGDVRVLEAVYEMKL 811
+R E+ F ++ D + I++G L+ +NP LHPGD+RV+ AV L
Sbjct: 978 SRANGEALRCDLLPEIFVQIPDYENKGHYKIIQGPCLLARNPSLHPGDLRVVNAVDCPDL 1037
Query: 812 EEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCE-TEPPMDYTGRRS-R 869
+ + ++FPQ G++P N CSGGDLDGD + + WD IP + E PMDYT +
Sbjct: 1038 --RHLRNVVVFPQTGDKPIANMCSGGDLDGDDYIVIWDGTFIPPKVNESPMDYTPPKPVE 1095
Query: 870 IMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDF 929
+VTLE+I KFFV YM NDTLG I+ AHL ADR P S +C+ LA LHS+AVDF
Sbjct: 1096 AKSGNVTLEDIRKFFVRYMKNDTLGTIANAHLATADRLPAGVFSQECVELAGLHSLAVDF 1155
Query: 930 AKTGAPAEMPLALKPKEFPDFMERE---DKPRYISFGVLGKLYRATLDSIMQIRSNAIWS 986
KTG A+M L+ +++P F E+ K Y+S +LG+LY A + A
Sbjct: 1156 PKTGVDAKMRKELRIRDWPHFFEKHIGTKKRFYVSSEILGQLYDA-------VEKVAFRP 1208
Query: 987 EKIAEASYDHDLEVDG--FEAFLGVAESH-------KEMYEEEMNALMNYYGASTEDEIL 1037
E+ A+ DL+ DG AF + E H K Y+ + LM TE EI
Sbjct: 1209 EECAK-----DLKFDGRILTAFNDINEKHLNMARDLKAKYDAAIRRLMAQNDIKTEFEIW 1263
Query: 1038 TGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSCK-----ENEHP--QLA 1090
+ + A + D + + DMK+ +++ + F + E+E+ +
Sbjct: 1264 STFALSHA-LIGSDYKFHEDMKE--------MRDGLMDRFDQEIRVEIRTEDEYTLGRFV 1314
Query: 1091 SAWYHVTYSPSYCK-----ERMALLSFPWIVGDILLNI 1123
+A Y +T + Y + E M L+SFPW+ ++L I
Sbjct: 1315 AAIYQIT-NEEYTRAVENGEPMPLISFPWVHDELLGKI 1351
>gi|407918335|gb|EKG11606.1| RNA-dependent RNA polymerase eukaryotic-type [Macrophomina phaseolina
MS6]
Length = 1511
Score = 375 bits (962), Expect = e-100, Method: Compositional matrix adjust.
Identities = 262/789 (33%), Positives = 401/789 (50%), Gaps = 71/789 (8%)
Query: 300 LSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSFV 359
L EV +QL + N ++ E ++ L+ + + A VL+ K ++P+
Sbjct: 352 LEFEVRYQLEVCLSNNILNEHNVTREFVERLAQMDKKMAKSVLEAAMDKKRRFFEPMDIF 411
Query: 360 KTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYR--ALVTPMKIYCLGPELETSNYVVKNFA 417
K +PL L Y A +TP I P +E SN +++ +
Sbjct: 412 K------------LPLRKEAMLKQTPAHCVYSRSANITPSTITFASPTMEISNRIIREYL 459
Query: 418 KYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHY 477
+++ F+RV F EE P + +S T++++R+ L++GI IGD+HY
Sbjct: 460 RFSDRFLRVKFTEEK----PRGKIRSS------RDDKDTELFTRVWRTLRNGIAIGDRHY 509
Query: 478 EFLAFSASQLRNNSVWMFA-------SNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLF 530
EFLAF SQ R + + FA + ++ D+R MG F++I+ V++ A+RMGQ F
Sbjct: 510 EFLAFGNSQFREHGAYFFAPIEDDLCDENNITPSDIRMLMGDFDEIQEVARYASRMGQCF 569
Query: 531 SSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCG----LSHTP 586
S++++ V V D+ N Y F+DG+GKIS + A ++AQ+ G + P
Sbjct: 570 STTREATSVKAH-VSGHEDIM----RNGYIFTDGVGKISAALAVKIAQEFGHPTAVEDPP 624
Query: 587 SAFQIRYGGYKGVIAVDRN-SFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIIS 645
S FQ R GG KGV+AV + ++ +RRS KF + + L + KWS+ LNR++I
Sbjct: 625 SVFQFRLGGCKGVLAVSKELGADEIHIRRSQDKFPAPSEGLEIIKWSQFATATLNRQLII 684
Query: 646 LLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNI---LVKMLLQGY 702
+L GV + VF Q QL L K + + AL +LQ+ VDS + L M+L G+
Sbjct: 685 ILDARGVPNGVFMKKLQDQLSDLKKAMTSEVVALRLLQRF--VDSNQVSLTLAGMVLDGF 742
Query: 703 EPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTR 762
EP+L +L + LK + R++V +G L+GC DET L +G +
Sbjct: 743 MGIKEPFLMSVLHLWRTWSIKYLKEKARLFVGEGAFLLGCLDETASL-HGHFYSEQNWKS 801
Query: 763 EELESKDQSFFHRVD----DKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVD 818
+ Q F D + I++G +V +NP LHPGDVRV++AV + KL V
Sbjct: 802 LQTNLLPQIFVQVSDINHPGRYKIIEGVCIVARNPSLHPGDVRVVQAVNQPKLHHLKNV- 860
Query: 819 CIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLE 878
++FPQ G+R PN CSGGDLDGD + + WD +LIP + PMD+T + + ++ VT+E
Sbjct: 861 -VVFPQTGDRDIPNMCSGGDLDGDDYMVVWDKELIPQKNYKPMDFTPPQKQTVEK-VTME 918
Query: 879 EIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEM 938
I KFFV+Y+ ND+LG I+ AHL AD + + S +CL LA +HS AVD+ K+G A M
Sbjct: 919 HITKFFVEYIKNDSLGVIANAHLAAADFEDEGVMSKRCLELARIHSTAVDYPKSGVAAIM 978
Query: 939 PLALKPKEFPDFMER-----EDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEAS 993
L P+ +P FM+ E+ Y S +LG+L+ A + + +A + +I A
Sbjct: 979 DKRLAPRRYPHFMQNNFRNLENGRCYESKKILGQLFDAVKEVDFDPQYDAPFDSRILNA- 1037
Query: 994 YDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDE-----ILTGNLRNRASYL 1048
++LE A L A + K +Y+ + LM + TE E IL N R L
Sbjct: 1038 --YNLE----PATLARAGALKVLYDAAVRRLMAQHDIQTEFEVWSTFILKHNNEIRDYSL 1091
Query: 1049 QRDNRRYGD 1057
Q D R D
Sbjct: 1092 QEDFGRIWD 1100
>gi|408392756|gb|EKJ72076.1| hypothetical protein FPSE_07701 [Fusarium pseudograminearum CS3096]
Length = 1206
Score = 374 bits (960), Expect = e-100, Method: Compositional matrix adjust.
Identities = 276/860 (32%), Positives = 419/860 (48%), Gaps = 76/860 (8%)
Query: 300 LSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQ-----KLHKLKSICYD 354
L EV +QL + +++ E + L+ + A L+ L D
Sbjct: 310 LPFEVRYQLEVCISQGQLNEHKITKEFLGKLASMPSHRAKEYLEFAAERVLKDGHPTTTD 369
Query: 355 PVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVK 414
P+S +Q G N KSI I RA++TP + P +E SN V++
Sbjct: 370 PMSTFDSQRDS-GDNYKSI------SRIPQYCGLVRRAVITPTTVRYSTPNIEVSNRVMR 422
Query: 415 NFAKYASDFMRVTFVEEDWSKLPANALSTSIQRG--IFSKPYRTKIYSRILTILQDGIVI 472
F F+R+ F EE +++G +K +IY RIL + +GI I
Sbjct: 423 RFRHIQDRFLRIQFTEE-------------MEKGKITVNKDQNDEIYKRILRTMYEGIRI 469
Query: 473 GDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSS 532
GD+ YEFLAF SQLR+N + F + VS +D+R WMG F+ I+ V+K AAR+GQ FS+
Sbjct: 470 GDRLYEFLAFGNSQLRSNGAYFFCPTEYVSCDDIRQWMGQFSHIKVVAKYAARLGQCFST 529
Query: 533 SKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLS--HTPSAFQ 590
++ + + IPDVE N YCF+DG+GKIS+ A+ V + + PSAFQ
Sbjct: 530 TRDVRGISSPNCLQIPDVE----RNGYCFTDGVGKISVFLAKLVGEDMAIDICADPSAFQ 585
Query: 591 IRYGGYKGVIAV--DRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLS 648
R GG KGV+AV + ++ +R S KFES ++ L + +W+ LN + I +L
Sbjct: 586 FRMGGCKGVLAVWPEDAKGTEVHVRESQKKFESDSKGLEIIRWARYATATLNLQTILILE 645
Query: 649 TLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQG---YEPN 705
LGV F + QQL + + + A+++L++ + + LL+ E
Sbjct: 646 CLGVPIRSFTTLLDQQLRQYELAMRDNDVAIEMLERFRDEQHNHSCLADLLRADFKTETF 705
Query: 706 VEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREEL 765
EP++ ++ + LK + RI+VPK ++GC DETG L G F +++
Sbjct: 706 QEPFVVNVINLWQSWSIKSLKEKARIHVPKSAFVLGCVDETGTLR-GHSFDTEGSKEKDV 764
Query: 766 ESKDQSFFHRVD----DKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCII 821
Q F D +KTSI++G +V +NP LHPGD+RV+EAV L D ++
Sbjct: 765 HRLPQIFLQISDPKKYNKTSIIRGPCVVGRNPSLHPGDIRVVEAVDCKALHH--LTDVVV 822
Query: 822 FPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCE-TEPPMDYTGRRSRIMDHDVTLEEI 880
FP G+RP PN SGGDLDGD FF+ WD L+P E PPM+Y+ + DV ++++
Sbjct: 823 FPSTGDRPVPNMLSGGDLDGDDFFVIWDPSLMPSEWNHPPMNYSPLDPIELKRDVNVDDL 882
Query: 881 HKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPL 940
FFV Y+ ND L I+ +H AD K SSKCL LA LHS AVD+ KTG PA +
Sbjct: 883 RNFFVKYLKNDKLPLIAMSHRAFADELGPK--SSKCLELAELHSKAVDYPKTGNPAVLRQ 940
Query: 941 ALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDL-- 998
+P+++P +ME+ + Y S LG +Y ++ N +W ++S+D +
Sbjct: 941 DQQPRKWPHWMEK--RYSYHSRKALGVIYDKVAHK--KVEFNPVW-----DSSFDKRITK 991
Query: 999 --EVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYG 1056
E+D LGVA K Y+ + +++ TE E+ T R + + D +
Sbjct: 992 RFELDN--ETLGVARKIKAEYDTAVRRVLSQNALKTEFELFTSFPLTRPA-VGSDYKFAE 1048
Query: 1057 DMKDRILLSAKNLQNEAKEWFGSSCKENEHPQLASAWYHVTYSPSYCKE----------- 1105
D+ ++ Q+ + G E P +A A Y VT +E
Sbjct: 1049 DLSCEFRSIKEHYQDVCIKAAGGKDAEKLEPFVA-AMYTVTEEQIKNEESILQPQGLEPK 1107
Query: 1106 RMALLSFPWIVGDILLNIKS 1125
M L+SFPWI ++ I +
Sbjct: 1108 SMPLISFPWIFHGVMCRIAT 1127
>gi|15422180|gb|AAK95829.1| putative RNA-dependent RNA polymerase [Diaporthe ambigua]
Length = 1483
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 277/899 (30%), Positives = 441/899 (49%), Gaps = 105/899 (11%)
Query: 270 DKTDLILEEGEEFCTTSEIVPLVKCRPGFNLSHEVLFQLNSLVHNQKVSLVAADAELIQI 329
D TDL LE L+ ++L V +QL + + + + A+ +
Sbjct: 456 DSTDLTLE-------------LLGSTDAYHLDFPVRYQLEVCISHGLLDEYSIGAQFLGR 502
Query: 330 LSGLSMETALMVLQKLHKLKSICYDPVS-FVKTQLHVLGRNCKSIPLSSHKRLIDHNVMS 388
L + A M+L+ + + ++P+ F ++ N ++ P ++ R
Sbjct: 503 LISFDTDRARMLLEGVAEANRQFFEPMEIFDDPKILHYWPNARTPPYATLVR-------- 554
Query: 389 CYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRG 448
RA++TP IY P +E +N +++ ++ F+RV F +E I G
Sbjct: 555 --RAVITPTAIYFKSPCVELTNRILRKYSDLNDRFLRVQFTDE-------------ITSG 599
Query: 449 -IFSKPYRTK---IYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAE 504
IFS TK +++R+ ++++GIVIGD+HY FLAFS SQ R N + F + D V+ E
Sbjct: 600 KIFSSQDSTKDDNLFTRVHRVMRNGIVIGDRHYRFLAFSNSQFRENGAFFFCNTDHVTCE 659
Query: 505 DVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDG 564
+R WMG F IRSV K AARMGQ F++++Q + + + I D++ + + + F+DG
Sbjct: 660 SIREWMGDFRHIRSVGKFAARMGQCFTTTRQVNGISIPKIRQIGDIQQQTGDHIWNFTDG 719
Query: 565 IGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRN-SFRKLSLRRSMLKFESRN 623
+GKIS A +A + L TPS FQIR GG KGV+ + ++ +R S KF++
Sbjct: 720 VGKISPFLATLIANERNLPETPSCFQIRMGGCKGVVVTWPDVPPSEVHVRPSQEKFKAVY 779
Query: 624 RMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQ 683
L + K S LN+++I +L LGV VF +M +L + L + A ++L+
Sbjct: 780 NGLEIIKTSAFSHATLNKQVIPVLVALGVDKSVFVSMLDSELTEYEEALADSMRAGELLR 839
Query: 684 KLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCF 743
+ + + ++ + + EP+L +L L LK + I V ++ G
Sbjct: 840 SQVDENQTTLTLAEMVDTFMDSEEPFLWTLLRLWKCWVLKRLKQKFAISVKNSAMVFGVV 899
Query: 744 DETGILNYGQVFVRVTMTREELESKDQSFFH----RVDDKTS----IVKGKVLVTKNPCL 795
DE G+L G +ES Q F D K++ ++ G +V +NP L
Sbjct: 900 DEIGVLR-GHSQATEGRRDNNIESLPQIFLQVPVEGSDGKSTTNYEVITGLCVVGRNPSL 958
Query: 796 HPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPC 855
HPGDVRV+EAV ++L + + ++FP+ G+R P+ CSGGD+DGD +F+ WD LIP
Sbjct: 959 HPGDVRVVEAVDALEL--RHLKNVVVFPRTGDRDIPSMCSGGDMDGDDYFVYWDERLIPL 1016
Query: 856 E-TEPPMDYTGRRSRI---MDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKA 911
E PP+D+ S DVT+E++ +FF YM ND+LG I+TAH AD+
Sbjct: 1017 EWYHPPLDHDAESSTPGLDKPEDVTIEDVTRFFAQYMKNDSLGRIATAHFAQADQLSGGV 1076
Query: 912 RSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRA 971
++ KC+ LA LHS AVD+ K+G PA M L+P+++P +MERE K Y S LG++Y
Sbjct: 1077 KNPKCIELAKLHSKAVDYIKSGKPAVMQRHLQPRKWPHWMEREKKSSYPSVSALGQIY-- 1134
Query: 972 TLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAF------LGVAESHKEMYEEEMNALM 1025
N I E+ A+Y+ +V + L A KE Y+ M LM
Sbjct: 1135 ----------NRIKIEEF-HAAYEMPFDVRILSRYQLEDDTLAEAGKIKEAYDIAMRRLM 1183
Query: 1026 NYYGAS-TEDEI----LTGNLRNRASYLQRDN--RRYGDMKDRI---LLSAKNLQNEAKE 1075
+ A TE EI + R + Y ++N R +K+R ++A +A+E
Sbjct: 1184 GQHEAPVTEFEIWSTFILSKPRVGSDYKLQENVGREMAALKERFRAECMTAATGNTQAQE 1243
Query: 1076 WFGSSCKEN--EHPQLASAWYHVTYS-------------PSYCKE----RMALLSFPWI 1115
+ SS N + + +A Y VT++ P + E +M L+SFPW+
Sbjct: 1244 FTFSSSMVNLEKLDRFVAAMYTVTHNEVRAAARERSMPRPDHDGEPEEVQMPLISFPWL 1302
>gi|429860171|gb|ELA34917.1| suppressor of ascus dominance [Colletotrichum gloeosporioides Nara
gc5]
Length = 1353
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 260/762 (34%), Positives = 398/762 (52%), Gaps = 58/762 (7%)
Query: 391 RALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIF 450
+ +VTP +Y P +E+SN V++ F++Y F+RV F +E L + + +F
Sbjct: 524 KVVVTPTTVYYSSPGVESSNRVLRKFSEYQDRFLRVQFTDE----LYYGKIYSDSGEELF 579
Query: 451 SKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWM 510
S+ YRT L GI IG +HYEFLAF SQ+R +V+ F D S + +R WM
Sbjct: 580 SRVYRT---------LAKGITIGSRHYEFLAFGNSQIRECAVYFFCPTDHRSCDCIRDWM 630
Query: 511 GCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISL 570
G F I++V+K AAR+GQ FS++++ V ++ I DVE N +CFSDG+GKIS
Sbjct: 631 GDFGHIKNVAKYAARIGQCFSTTREIPGTTVANIVPIEDVER----NGFCFSDGVGKISQ 686
Query: 571 SFAR----QVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSFRK-LSLRRSMLKFESRNRM 625
A +++ PSAFQ R GG KG++AV ++ R+ + +R S KF++
Sbjct: 687 LLAHIVVVEMSSDDACISVPSAFQFRMGGCKGMLAVWPDAKRQEVHIRPSQEKFKATFNG 746
Query: 626 LNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKL 685
L + K+++ LNR+ I++L++LGV+ E + ++Q+ K + +R AA +L +
Sbjct: 747 LEIIKYAQHSIATLNRQTITVLTSLGVRAETILKLAERQIKNYQKAMNDRVAAASLLGQY 806
Query: 686 NGVDSKNILVKMLLQ-GY-EPNV-EPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGC 742
+ ++ +K L+ G+ +P + EP++ +L + LK + R+ V + L+GC
Sbjct: 807 IDENLTSLTIKDLVGWGFMDPEIQEPFVLTILDLWRIWSMKLLKEKARVIVEESAFLLGC 866
Query: 743 FDETGILNYGQVFVRVTMTREELESKDQSFFH----RVDDKTSIVKGKVLVTKNPCLHPG 798
DETG L G +E Q F K + V G +V +NP LHPG
Sbjct: 867 LDETGSLR-GYSTATEGKKTNNIEDLPQVFLQVESPSGSGKFTCVTGLCIVGRNPSLHPG 925
Query: 799 DVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCE-T 857
D+RV+EAV +L + ++FP+ G+R P+ SGGDLDGD FF+ W+ DLIP +
Sbjct: 926 DLRVVEAVDVPQLHH--LRNVVVFPRNGDRDVPSMMSGGDLDGDDFFVMWNQDLIPKDWH 983
Query: 858 EPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCL 917
+PPM+YT ++ DV ++++ FFV YM ND+L I+TAHL HAD+ + KCL
Sbjct: 984 QPPMNYTQPTPAVLRRDVQVKDLRTFFVRYMQNDSLALIATAHLAHADKSLLGVKDQKCL 1043
Query: 918 HLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIM 977
LA LHS AVD+ KTG PA++P AL PKE P F+ + Y S LGKLY D I
Sbjct: 1044 QLAALHSKAVDYVKTGDPAKLPPALNPKERPHFLGSRGQ-TYHSSTALGKLY----DMIQ 1098
Query: 978 QIRSNAIWSEKIAEASYDHDL--EVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDE 1035
+ N ++ E +D+ + + E L A + K Y+ M LM TE E
Sbjct: 1099 DVGFNPLY-----EKRFDNRVLNRFNLTEDLLSKARAVKVQYDMAMRRLMGQRDIDTEFE 1153
Query: 1036 ILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSCKENEHPQLASAWYH 1095
I TG ++ ++ ++ LL + + +E GS +N P +A A Y
Sbjct: 1154 IWTGFALSKPRVGSDYKQQEEIGRESSLLKHRFREICYQEAGGSRVFDNIGPFVA-AMYK 1212
Query: 1096 VTY------------SPSYCKERMALLSFPWIVGDILLNIKS 1125
VT + ++ M L+SFPWI I+ I +
Sbjct: 1213 VTQDEVNAALAGEYEDEEHKRQSMPLISFPWIFHWIMGRIAT 1254
>gi|212544602|ref|XP_002152455.1| RNA-directed RNA polymerase (Sad-1), putative [Talaromyces marneffei
ATCC 18224]
gi|210065424|gb|EEA19518.1| RNA-directed RNA polymerase (Sad-1), putative [Talaromyces marneffei
ATCC 18224]
Length = 1359
Score = 369 bits (948), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 258/857 (30%), Positives = 431/857 (50%), Gaps = 71/857 (8%)
Query: 299 NLSHEVLFQLNSLVHNQKVS-LVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVS 357
+L + +QL + + +S A+ E +Q L + AL +L+ + K I +D +
Sbjct: 434 HLPFAIRYQLEVCISHGYISEYTASKPEFVQRLKDMEERKALTLLEHVATDKKIYWDAMK 493
Query: 358 FVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFA 417
P +R I A VTP IY P +E +N V++ ++
Sbjct: 494 IFDILF----------PKGVTRRNIPSYCCMIRTATVTPSTIYWNTPSMEITNRVLRRYS 543
Query: 418 KYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHY 477
++A F+RV F +E + + ++ +I++RI + +GI++GD+ Y
Sbjct: 544 EHADRFLRVRFKDEKFEGRINSTHHDTMD----------EIFARIKRTMSNGIILGDRKY 593
Query: 478 EFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTL 537
EFLAF SQ R + + FAS V+A ++R WMG F++IR+++K AAR+GQ FS+++
Sbjct: 594 EFLAFGNSQFREHGAYFFASEAHVTAANIRAWMGEFSEIRNIAKYAARLGQCFSTTRAIN 653
Query: 538 VVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLS----HTPSAFQIRY 593
V+ ++ IPDVE Y FSDG+G+IS A+ Q+ + PSA+Q R
Sbjct: 654 TCTVE-LKRIPDVE----RGGYTFSDGVGRISRFLAQMTQQELKIKTPDKEPPSAYQFRL 708
Query: 594 GGYKGVIAV-DRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGV 652
GG KG++ + D R++ +R S KF + ++ L + +WS+ LNR++I++LS+LGV
Sbjct: 709 GGCKGMLVLSDVPRGREIQIRPSQEKFPANHQGLEIIRWSQFSSATLNRQLIAVLSSLGV 768
Query: 653 KDEVFEAMQQQQLILLGKMLINREAALDVLQK-LNGVDSKNILVKMLLQGYEPNVEPYLS 711
DEVF ++ + L + + AA+ +LQK ++ + +L KM+ G+ + +P+++
Sbjct: 769 SDEVFHEKLRRMVSNLEEATRDDRAAMRLLQKYIDPNEMTLVLSKMVSDGFLQSRDPFVT 828
Query: 712 MMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQS 771
++ + LK + +I + G L+G DET L G + +V ESK +
Sbjct: 829 SIITLWKAWSIKYLKEKAKITIEDGACLLGVLDETATLQ-GFSYEKVKKPHLSRESKLDA 887
Query: 772 F------FHRVDDKT-SIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQ 824
+R D+K ++KG ++ +NP LHPGD+RV+ AV +L D ++ PQ
Sbjct: 888 LPEIFLQVYRADEKKYCVIKGVCILARNPSLHPGDIRVVRAVDRPELAH--LKDVVVLPQ 945
Query: 825 KGERPHPNECSGGDLDGDIFFISWDNDLIPCE-TEPPMDYTGRRSRIMDHDVTLEEIHKF 883
G+R + CSGGDLDGD + + WD DL+P + PMDY + +D VT+ +I F
Sbjct: 946 LGDRDIASMCSGGDLDGDDYLVIWDKDLVPNQWFRAPMDYAPIKGVNLDRSVTVNDITTF 1005
Query: 884 FVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALK 943
FV+YM ND+L I+ AHL +D + S KC+ LA LHS AVD+ KTG PA +P L+
Sbjct: 1006 FVNYMKNDSLPRIAHAHLAWSDFLMNGVESPKCIRLAQLHSNAVDYNKTGEPAYLPRDLR 1065
Query: 944 PKEFPDFMEREDKPR---YISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEV 1000
P+ +P FME+ KP+ Y S +LG+LY A + + +++ E+ V
Sbjct: 1066 PRRWPHFMEKNYKPKDQTYQSKKILGQLYDAVDRVDFHPDFDVPFDKRVLESG------V 1119
Query: 1001 DGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKD 1060
+ + A K Y+ + +M + TE E+ + + + A+ L +D + + ++
Sbjct: 1120 SVTDNIMQFARELKVDYDLALKRIMAQHEIRTEFEVWSTFVLSHAN-LSKDYKFHEELGG 1178
Query: 1061 RILLSAKNLQNEAKEWFGSSCKENEHPQLASAWYHVTYSPSYC----------------- 1103
+ Q E + G + P +A A Y VT
Sbjct: 1179 ITKALKERFQKECYDKVGGRDFNHIKP-MAVAIYSVTNDEVNAALAEFRKNNPDTKIKPE 1237
Query: 1104 KERMALLSFPWIVGDIL 1120
E + ++SF W+ D+L
Sbjct: 1238 PENLPMISFAWLFPDVL 1254
>gi|17227102|gb|AAL38011.1|AF443073_1 putative RNA-dependent RNA polymerase [Phomopsis sp. CMW 5588]
Length = 1122
Score = 369 bits (948), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 268/864 (31%), Positives = 430/864 (49%), Gaps = 80/864 (9%)
Query: 298 FNLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVS 357
++L +V +QL + + + + +A+ + L+ + A M+L+ + + ++P+
Sbjct: 90 YHLDFQVRYQLEVCISHGLLDEYSVNAQFLDKLNSFDADRARMMLEGVAEASIQLHEPMK 149
Query: 358 -FVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNF 416
F ++ N + P ++ R RA++TP IY P +E +N +++ +
Sbjct: 150 IFDDPKVLHYWPNARVPPYATLVR----------RAVITPTTIYFKTPCVELTNRILRKY 199
Query: 417 AKYASDFMRVTFVEEDWSKLPANALSTSIQRG-IFSKPYRTK---IYSRILTILQDGIVI 472
+ F+RV F +E I G IFS K +Y R+ ++Q+GI I
Sbjct: 200 SDLNDRFLRVQFTDE-------------ITFGKIFSSQDSNKDDNLYIRVHRVMQNGISI 246
Query: 473 GDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSS 532
GD+HY FLAFS SQ R N + F D V+ + +R WMG F IRSV K AARMGQ F++
Sbjct: 247 GDRHYRFLAFSNSQFRENGAFFFCETDHVTCDSIREWMGDFRHIRSVGKFAARMGQCFTT 306
Query: 533 SKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIR 592
++Q + + ++ I D+E + +T+ F+DG+GKIS FA+ +A + L TPS FQ+R
Sbjct: 307 TRQVNGISIPNIRKIDDIERQTGDHTWNFTDGVGKISNFFAKLIASERDLPETPSCFQMR 366
Query: 593 YGGYKGVIAVDRN-SFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLG 651
GG KGV+ V + ++ +R S KF++ +L + K N+++I +L LG
Sbjct: 367 IGGGKGVLVVWPDVPPSEVHVRPSQEKFKAVYNVLEIIKTFAFSHATFNKQVIPVLVALG 426
Query: 652 VKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLS 711
V + VF +M +L + L + A ++L+ + + + ++ + + EP+L
Sbjct: 427 VDNSVFVSMLDDELREYDEALADSMKAGELLRSQVDENQTTLTMAEMVDTFMDSKEPFLW 486
Query: 712 MMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQS 771
+L L LK + I V K ++ G DE G+L G +ES Q
Sbjct: 487 TLLRLWKCWILKRLKHKFAISVKKSAMVFGVVDEIGVLR-GHSQATEGRGYNSIESLPQI 545
Query: 772 FFH--------RVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFP 823
F R ++ G +V +NP LHPGDVRV+EAV +L + + ++FP
Sbjct: 546 FLQVPIEGSDGRSTTNYEVITGICVVGRNPSLHPGDVRVVEAVDVPEL--RHLKNVVVFP 603
Query: 824 QKGERPHPNECSGGDLDGDIFFISWDNDLIPCETE-PPMDYTGRRSRI-MDHDVTLEEIH 881
+ G+R P+ CSGGD+DGD +F+ WD LIP E + PP+++ S + DVT+E++
Sbjct: 604 KTGDRDIPSMCSGGDMDGDDYFVYWDERLIPTEWDHPPLNHDAGSSTLDKPADVTIEDVT 663
Query: 882 KFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLA 941
+FF YM ND+LG I+TAH AD+ ++ KC+ LA LHSMAVD+ K+G PA M
Sbjct: 664 RFFAQYMKNDSLGRIATAHFAQADQLSGGVKNPKCIELAKLHSMAVDYIKSGRPAVMKRH 723
Query: 942 LKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKI-AEASYDHDLEV 1000
L+P+++P +ME+E K Y S+ LGK+Y D I +A + A + LE
Sbjct: 724 LQPRKWPHWMEKEKKSNYRSYSALGKIY----DRIKIEEFHAAYEMPFDARILSRYQLEA 779
Query: 1001 DGFEAFLGVAESHKEMYEEEMNALMNYYGAS-TEDEILTGNLRNR----ASYLQRDN--R 1053
D L A K Y+ M LM + A TE EI + + +R + Y ++N R
Sbjct: 780 DT----LAKASKIKATYDIAMRRLMGQHEAPVTEFEIWSTFILSRPRVGSDYKLQENVGR 835
Query: 1054 RYGDMKDRILLS-----AKNLQNEAKEWFGSSCKENEHPQLASAWYHVTYSP--SYCKER 1106
+K R N+Q E S + + +A Y VT++ + +ER
Sbjct: 836 ELAALKLRFRAECMEAVTGNIQTEGFAPASSVVNLEKLDRFVAAMYTVTHNDVRAALRER 895
Query: 1107 ---------------MALLSFPWI 1115
M L+SFPW+
Sbjct: 896 SMPKPNGEGGSEEIQMPLISFPWL 919
>gi|260801475|ref|XP_002595621.1| hypothetical protein BRAFLDRAFT_64731 [Branchiostoma floridae]
gi|229280868|gb|EEN51633.1| hypothetical protein BRAFLDRAFT_64731 [Branchiostoma floridae]
Length = 1492
Score = 369 bits (947), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 243/635 (38%), Positives = 349/635 (54%), Gaps = 53/635 (8%)
Query: 515 KIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVE--VTSDGNTYCFSDGIGKISLSF 572
++R + ARMGQ FS+++ ++ V V I D+E DG +YCFSDGIGKIS
Sbjct: 587 QVRCPATYLARMGQCFSTTESSVTVRPGQVSRIADIEGGRDPDGKSYCFSDGIGKISRDL 646
Query: 573 ARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRN-SFRKLSLRRSMLKFESRNRMLNVTKW 631
A++V +K SH PSAFQ+RY G KG++AVD + + R+SM KF S + N+
Sbjct: 647 AKEVCEKTQRSHEPSAFQVRYAGVKGMLAVDPTLTGLAMQYRKSMEKFSSEHN--NIEIC 704
Query: 632 SESMPC--FLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQK---LN 686
SES P +LNR+IIS+LS LG+ DEVF+ +Q+ QL L M + A+D L + L+
Sbjct: 705 SESHPARFYLNRQIISILSGLGIPDEVFQVLQEDQLRKLASMFLLENRAVDALNQRAQLS 764
Query: 687 GVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPK--GRLLIGCFD 744
GV + K+ G EP+ ML +++ + D + + RI +P GR ++G D
Sbjct: 765 GVPYQ----KLSNCGVYMTREPFFKGMLRRVYKSGIGDTRRKARIEIPPEYGRNMLGVLD 820
Query: 745 ETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLE 804
ETG L YGQVFV+ T E++ K +T ++ G V+V++NPC HPGDVR L
Sbjct: 821 ETGTLEYGQVFVQYT---EDITDKG--------GETKVLTGDVVVSRNPCFHPGDVRKLR 869
Query: 805 AVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI-PCETEPPMDY 863
AV L VD I+FP KG RPHPNE SGGDLDGD FF++W DL+ PM +
Sbjct: 870 AVDVPALHH--MVDVIVFPSKGPRPHPNEMSGGDLDGDQFFVTWHPDLLFQRPNADPMHF 927
Query: 864 TGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLH 923
+ +I VT+ ++ F VDY+ +D LG I+ AHL +D++ D S CL+LA H
Sbjct: 928 KAPK-KIELEIVTISDLQNFIVDYIKSDILGVIANAHLAFSDKEEDGVFSQVCLNLAEKH 986
Query: 924 SMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRY-ISFGVLGKLYR--ATLDSIMQIR 980
S AVDF KTG P + +PK +PDFM++ K S +G++YR +++I
Sbjct: 987 SDAVDFPKTGVPVGLSDDERPKAYPDFMDKSHKKTVRRSEKAMGEMYRECQAIENICSAP 1046
Query: 981 SNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGN 1040
+E I Y L + + + AE + Y +++ LM+ YG TE E ++G
Sbjct: 1047 EKTDEAETIEPDPY---LILPTHQRYKRQAEQSRGRYNDQLKYLMDRYGIETEAEAMSGC 1103
Query: 1041 LRNRASYLQRDNRRYGDMKDRILLSA-KNLQNEAKEWF------GSSCKENEHP----QL 1089
+ ++ DNR +R+ K+L+ +E F + K++++P
Sbjct: 1104 IGRIHKHM--DNRYDRHEVERVFKERIKDLRRRTREEFFVEFGGEKNVKKSDYPPEVQAK 1161
Query: 1090 ASAWYHVTYSPSYCKERMALLSFPWIVGDILLNIK 1124
ASAWY VTYS + LLSFPWIVGDIL IK
Sbjct: 1162 ASAWYVVTYSDA---NENRLLSFPWIVGDILAVIK 1193
Score = 157 bits (398), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 87/204 (42%), Positives = 122/204 (59%), Gaps = 10/204 (4%)
Query: 391 RALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIF 450
R +VTP ++ L PE+ N V++ F F+RV F +ED+SKL A T RG
Sbjct: 394 RVIVTPTRLVFLQPEIMYGNRVLREFG--TDHFLRVVFRDEDFSKLQA----TGTGRG-- 445
Query: 451 SKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWM 510
+ KI+ R+ +L+ GI +G++ YEFLA S SQLR + +W FAS+ A+ +R WM
Sbjct: 446 NGDEEEKIFVRVRKVLKKGIKVGNRLYEFLAASNSQLREHGLWFFASDGRNRADSIRDWM 505
Query: 511 GCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVE--VTSDGNTYCFSDGIGKI 568
G F+ R + ARMGQ FS+++ ++ V V I D+E DG +YCFSDGIGKI
Sbjct: 506 GDFSNSRCPATYLARMGQCFSTTESSVTVRPGQVSRIADIEGGRDPDGKSYCFSDGIGKI 565
Query: 569 SLSFARQVAQKCGLSHTPSAFQIR 592
S A++V +K SH PSAFQ+R
Sbjct: 566 SRDLAKEVCEKTQRSHEPSAFQVR 589
>gi|406868525|gb|EKD21562.1| RNA-dependent RNA polymerase 1 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 1494
Score = 369 bits (947), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 248/760 (32%), Positives = 386/760 (50%), Gaps = 54/760 (7%)
Query: 297 GFNLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLS---METALMVLQKLHKLKSICY 353
+ L EV +QL + + ++ ++ LS ++ A +L+ + + Y
Sbjct: 395 AYVLPFEVRYQLEVCISREILNEYNVTRGFVKKLSEIASVDAAKARNILEYVAGQEKRVY 454
Query: 354 DPVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVV 413
DP++ + Q + IP H +A +TP +Y P +ET+N V+
Sbjct: 455 DPMTIFEDQEALAFTAKTEIP---------HYCAYSRKATITPSTMYFSSPTVETTNRVL 505
Query: 414 KNFAKYASD--FMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIV 471
+++A+ D F+RV F +E L+ ++++RI L +GI
Sbjct: 506 RHYARENRDGRFLRVQFTDE---------LAEGRINACVDNQKNDELFTRIYRTLFNGIQ 556
Query: 472 IGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFS 531
IGD+HYEFLAF SQ R N + F + +S +D+RGWMG F+ I+ V+K AAR+GQ FS
Sbjct: 557 IGDRHYEFLAFGNSQFRENGAYFFCPTEHLSCDDIRGWMGHFSDIKVVAKYAARLGQCFS 616
Query: 532 SSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGL--SHTPSAF 589
+++ + D+ I DVE N Y F+DG+GKIS A+ ++ + GL + PSAF
Sbjct: 617 TTRAINGLSKPDIVKIADVE----NNGYTFTDGVGKISPFLAQMISAELGLRTNTAPSAF 672
Query: 590 QIRYGGYKGVIAVDRNSFRK-LSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLS 648
Q R GG KGV+ V ++ K + +R S KF + L + + + LNR+ I++LS
Sbjct: 673 QFRLGGCKGVLVVWPDAKEKEVHIRMSQQKFTAVYNGLEIIRCARFSCATLNRQTITILS 732
Query: 649 TLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVK---MLLQGYEPN 705
LGV DEVF M +QL + N +AA+ +L L +D + + M+ G+
Sbjct: 733 ALGVPDEVFLKMLSEQLANYQTAMDNDDAAVSLL--LRYIDDNQMTINIATMIRNGFMAE 790
Query: 706 VEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREEL 765
+P++ +L + LK + +I + G ++GC DET L G +
Sbjct: 791 KDPFVLSLLHLWRSWSIKLLKEKAKIIIENGAFVLGCVDETFTLR-GYTISTAPHGEQVA 849
Query: 766 ESKDQSFFHRVDDKT-----SIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCI 820
E + F +V DK+ +I+ G LV +NP LHPGD+RV++AV L D +
Sbjct: 850 EEELPQIFLQVPDKSDPNRYNIITGICLVGRNPSLHPGDLRVVQAVDVPALHH--LRDVV 907
Query: 821 IFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETE-PPMDYTGRRSRIMDHDVTLEE 879
+FP G+R P+ CSGGDLDGD FF+ WD L P E PM+Y + ++ + V + +
Sbjct: 908 VFPASGDRDVPSMCSGGDLDGDDFFVIWDEALRPREWNCQPMNYIAPKPKLHNQPVQIVD 967
Query: 880 IHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMP 939
+ KFFV +M ND+L AI+ AHL +D + KC+ LA+LHS AVD+ KTG A+MP
Sbjct: 968 LMKFFVRFMKNDSLPAIAHAHLAQSDALQMSVKDPKCIELASLHSKAVDYVKTGEAAQMP 1027
Query: 940 LALKPKEFPDFMEREDKPR---YISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDH 996
L+P+++P FME++ KP+ Y S +LG+LY + + + ++I +A
Sbjct: 1028 KHLRPRKWPHFMEKKHKPKTAQYHSNEILGQLYDKVETVDFKPQYEGPFDKRILKAYILD 1087
Query: 997 DLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEI 1036
D A L K Y+ M LM TE EI
Sbjct: 1088 D-------AILKTVRQIKSKYDTAMKRLMAQQEIKTEFEI 1120
>gi|226490831|ref|NP_001142097.1| uncharacterized protein LOC100274261 [Zea mays]
gi|194707104|gb|ACF87636.1| unknown [Zea mays]
Length = 552
Score = 367 bits (942), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 214/536 (39%), Positives = 301/536 (56%), Gaps = 37/536 (6%)
Query: 616 MLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINR 675
M KFES + +L V W++ P FLNR+II+LLS+L V D +F MQ+ L L +L +
Sbjct: 1 MHKFESNHTVLEVVSWTKFQPGFLNRQIITLLSSLNVPDAIFAQMQEAMLSNLNNILSDS 60
Query: 676 EAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPK 735
+ A D++ + + ML G P EP+L MLL+ +QL L + RI+VPK
Sbjct: 61 DVAFDIVTA-SCAEQGTTAALMLSAGISPGTEPHLKAMLLAIRSSQLLGLLEKTRIFVPK 119
Query: 736 GRLLIGCFDETGILNYGQVFVRVTM-TREELESKDQSFFHRVDDKTSIVKGKVLVTKNPC 794
GR L+GC DE GIL GQ F+R + + K S + + G +++ KNPC
Sbjct: 120 GRWLMGCLDELGILEQGQCFIRASSPSLNNCLVKYGSRLSAANTNAETILGTIVMAKNPC 179
Query: 795 LHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIP 854
LHPGDVR+LEAV +L VDC++FP+KGERPH NE SG DLDGD++F++WD +LIP
Sbjct: 180 LHPGDVRILEAVDVPELHH--LVDCLVFPKKGERPHANEASGSDLDGDLYFVTWDENLIP 237
Query: 855 CETEP--PMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKAR 912
+ PMDY+ ++ + V+ +I FF+ M+N+ LG IS AH+VHAD A
Sbjct: 238 PGKKSWNPMDYSPAEAKQLPRAVSQHDIVGFFLKNMVNEKLGPISNAHVVHADMSEYGAM 297
Query: 913 SSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRAT 972
KC+ LA L + AVDF KTG MP +L+PK +PDFM +ED Y S +LG+LYR
Sbjct: 298 DEKCIQLAELAATAVDFPKTGKIVSMPASLRPKLYPDFMGKEDAISYRSEKILGRLYR-- 355
Query: 973 LDSIMQIRSNAIWSEKIAEAS---YDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYG 1029
SI + S+ + E+ ++ YD D+EV G FL A K YE ++NAL+N YG
Sbjct: 356 --SIQEASSDDLVPEETCTSNNLPYDADMEVAGAADFLSSAWQCKCSYETQLNALLNQYG 413
Query: 1030 ASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGS------SCKE 1083
TE E++T ++ + Y +RR GD+K+R+ + L E + F S +
Sbjct: 414 VRTEAELVTEHIWSLPKY---SSRRQGDIKERLKNAYYALHKEFRSIFESIVTDQTEISD 470
Query: 1084 NEHPQL----ASAWYHVTYSPSY-----------CKERMALLSFPWIVGDILLNIK 1124
+E + ASAWY VTY P + C++ A LSF WI + L IK
Sbjct: 471 DEKSRFYEMKASAWYQVTYHPEWVQKSREMFKSDCEDMPARLSFAWIAVEHLARIK 526
>gi|169595008|ref|XP_001790928.1| hypothetical protein SNOG_00237 [Phaeosphaeria nodorum SN15]
gi|111070612|gb|EAT91732.1| hypothetical protein SNOG_00237 [Phaeosphaeria nodorum SN15]
Length = 1523
Score = 367 bits (942), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 275/869 (31%), Positives = 426/869 (49%), Gaps = 120/869 (13%)
Query: 300 LSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSFV 359
LS + +QL + + N + AE ++ L+ + A+ +L+K+ + YDP+
Sbjct: 528 LSFPIRYQLEACLSNGYLKEHTVTAEFLERLAK-NPRRAVYLLEKVVDKQETYYDPMEIF 586
Query: 360 KTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKY 419
++ G K +P + A++TP I+ P +ETSN + + +A
Sbjct: 587 --EIRTRGSLEKKVP---------SYCLLQRSAIITPSTIHVASPIMETSNRITREYAAI 635
Query: 420 ASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEF 479
A F+RV F +E + SI G + R+ +++GIV+ ++YEF
Sbjct: 636 ADRFLRVKFSDEK-----TEGVLRSIPNGKADA-----TFDRVRRAMKNGIVVAGRYYEF 685
Query: 480 LAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVV 539
LAF SQ R + + +A SA+D+R +G F+ I++V+K AR+GQ FS+++ + V
Sbjct: 686 LAFGNSQFREHGAYFYAPTSTKSADDIRSSLGRFDHIKTVAKFGARLGQCFSTTR-AMRV 744
Query: 540 PVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHT----PSAFQIRYGG 595
V V+ IPD+E N YCF+DG+GK+SL A+ AQ+ GLS+ PS +Q R GG
Sbjct: 745 KVTIVK-IPDIER----NGYCFTDGVGKLSLFLAQMAAQELGLSNAFDDPPSLYQFRLGG 799
Query: 596 YKGVIAVD-RNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKD 654
KGV+A+D + + ++ +R S LKFE++ L + + S F NR+II +LS LGV D
Sbjct: 800 CKGVLALDPKITGNEVHIRPSQLKFEAKFLGLEIIRSSALATPFFNRQIIVVLSDLGVPD 859
Query: 655 EVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNI-LVKMLLQGYEPNVEPYLSMM 713
V QQ+ + + + +++ A+ L+K ++ + + M++ G+ + EP++ +
Sbjct: 860 NVLIQKQQEMVNDYEQAMTDKDTAIAKLRKHIDMNQTTLTMAGMVIDGFMESREPFMMSL 919
Query: 714 LLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGIL--NYGQVFVRVTMTREELESKDQS 771
L + +LK + RI + G ++GC DE+G L + R +R++
Sbjct: 920 LRLWRAATIKNLKEKARIAIEDGAFVLGCVDESGTLKGHLNDPQSRSDASRQDKMQTLPE 979
Query: 772 FFHRVDDKTS-------IVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQ 824
F +VDD + IVKG ++ +NP LHPGD+RV+ AV L V ++ PQ
Sbjct: 980 IFLQVDDTEANKRGHYKIVKGVCVLARNPSLHPGDLRVVRAVDVPALHHLKNV--VVLPQ 1037
Query: 825 KGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFF 884
G+R N CSGGDLDGD + + WD DLIP +TL +I FF
Sbjct: 1038 TGDRDLANMCSGGDLDGDDYMVLWDKDLIP------------------ELITLSDISDFF 1079
Query: 885 VDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKP 944
V YM ND+LG I+ AHL AD + + S CL LA LHS AVD+ K+G PA+M L+P
Sbjct: 1080 VTYMQNDSLGQIAYAHLAQADVNHEGVGSGTCLELAKLHSQAVDYPKSGIPAQMSQDLRP 1139
Query: 945 KEFPDFMER---EDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDL--- 998
K +P FME+ + Y S VLGKLY D + + W E ++D +
Sbjct: 1140 KRWPHFMEKKHLQAHKIYRSTRVLGKLY----DQVELVDFKPQW-----ENAFDFRILDA 1190
Query: 999 -EVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDE-----ILTGNLRNRA-SYLQRD 1051
EVD E L A K +Y+E LM +G TE E +L N +R + +
Sbjct: 1191 YEVD--EELLSKATDIKALYDEAFKRLMAKHGIRTEFEAWSVFVLAHNQESRDYKFAEEF 1248
Query: 1052 NRRYGDMK---DRILLSAKNLQNEAKEWFGSSCKENEHPQLASAWYHVT-----YSPSYC 1103
R G +K I A + N A +W N +A Y VT + + C
Sbjct: 1249 GRTMGALKAQYQEICREAAEMTN-AADW-------NRLGPFVAAMYKVTGRELEAALAEC 1300
Query: 1104 K-----------------ERMALLSFPWI 1115
+ E M L+SFPW+
Sbjct: 1301 RAMKVVGGLEVPARLMDAEHMPLMSFPWL 1329
>gi|378728086|gb|EHY54545.1| RNA-directed RNA polymerase [Exophiala dermatitidis NIH/UT8656]
Length = 1461
Score = 366 bits (940), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 267/873 (30%), Positives = 422/873 (48%), Gaps = 85/873 (9%)
Query: 297 GFNLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPV 356
+L ++ +QL + ++ D E +Q L+ L + A +L + + YDP+
Sbjct: 375 AIHLDFDLRYQLEVCISQGWLNEYTIDKEFLQRLTSLPRQRAKQMLIHVDSYQERIYDPM 434
Query: 357 SFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNF 416
+ K + +++P N Y A VT + P +E +N +++ +
Sbjct: 435 TIFKDLRYSKPVRARALPT---------NCNEIYHATVTASGVLFHTPSVEITNRIIRKY 485
Query: 417 AKYASDFMRVTFVEEDW---SKL-PANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVI 472
+Y F+RV F ++ + S+L PA + ++ R+ L+ GI+I
Sbjct: 486 ERYNDRFLRVRFEDDSYRGKSRLYPATNGRMRL------------LFERVRRTLKHGIII 533
Query: 473 GDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSS 532
D+HYEFLA+ SQLR + + FAS +++ + +R MG F+ + V+K AARMGQ FS+
Sbjct: 534 ADRHYEFLAWGNSQLREHGAYFFASTHDITPDTIRRSMGIFDSEKVVAKRAARMGQCFST 593
Query: 533 SKQTLVVPVQDVE--MIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGL-SHTPSAF 589
++ V+ + +I DV + N + F+DG+GKIS+ A+ V L PSA+
Sbjct: 594 TRAVSVLSKRAFHKRLIDDVII----NGHTFTDGVGKISMLGAQLVCSSLKLRGKVPSAY 649
Query: 590 QIRYGGYKGVIAVDRN-SFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLS 648
Q R GG KGV+A+D + +R S KF+S + L + + SE FLNR++I +LS
Sbjct: 650 QFRLGGCKGVLALDPLLPGVDIKIRPSQYKFQSESDELEIIRVSEFWQPFLNRQLILVLS 709
Query: 649 TLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNI---LVKMLLQGYEPN 705
LGV DEVF Q+ + L + +++ AAL L+ + VD + M+ G+ +
Sbjct: 710 DLGVPDEVFLQKQEDCIKALDRAMVDDTAALRALR--DNVDPNLTTLSIAAMIEDGFRQS 767
Query: 706 VEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREEL 765
E +++ +L + L LK + +I VP+G ++G DET L + FV L
Sbjct: 768 NEIFVTSLLRLYRAWTLKYLKEKAKIPVPQGAFVLGVVDETNKLRGHEPFVSPGSEPPTL 827
Query: 766 ESKDQSFFHRVDDKTS---IVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIF 822
+ Q F D T IV+G ++ +NP LH GD+RV+ AV L D ++
Sbjct: 828 QDLPQIFMQYTDQHTGQRRIVEGVCIIARNPSLHRGDIRVVHAVDIPALHH--LCDVVVM 885
Query: 823 PQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETE---PPMDYTGRRSRIMDHDVTLEE 879
P +GER P+ CSGGDLDGD + + WD DLIP + E P Y + D ++T ++
Sbjct: 886 PIQGERDLPSMCSGGDLDGDDYVVIWDPDLIPPQEEWFVEPFSYAAPKPVGKD-EITTDD 944
Query: 880 IHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMP 939
I FF DYM ND LG I+ AHL AD + RS CL L LHS AVD+ KTG PAEMP
Sbjct: 945 IINFFCDYMQNDFLGRIAHAHLAAADYLDEGIRSDVCLSLVNLHSKAVDYPKTGVPAEMP 1004
Query: 940 LALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLE 999
L+ ++P FME+ P+Y S +LG+LY D++ ++ W + H L
Sbjct: 1005 RELERNKWPHFMEKRRAPQYKSHKILGQLY----DAVERVAFEPNWEGSFDQRILKHQLP 1060
Query: 1000 VDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMK 1059
E+ + K+ Y+E M +M + +TE E+ + + + S RD + + ++
Sbjct: 1061 P---ESVVEEVRRLKKSYDEGMRRIMAQHQINTEFEVWSTFVLHH-SKAARDFKFHEEIG 1116
Query: 1060 DRILLSAKNLQNEAKEWFGSSCKENEHPQLASAWYHVTY--------------------- 1098
+ + E G E P +A A YH+TY
Sbjct: 1117 QHARTLKEQYYDVLVEHAGGRDFEKLMP-MAVAAYHITYDEFRQAQEAVDGSVIDEVFSD 1175
Query: 1099 --------SPSYCKERMALLSFPWIVGDILLNI 1123
+ + M +SFPW++ DIL I
Sbjct: 1176 AAGSRASSAGGPQAKEMPFISFPWVLQDILGRI 1208
>gi|18656898|gb|AAL78034.1|AF468822_2 putative RNA-dependent RNA polymerase RDP-1 [Diaporthe perjuncta]
Length = 1484
Score = 366 bits (940), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 231/690 (33%), Positives = 366/690 (53%), Gaps = 44/690 (6%)
Query: 298 FNLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVS 357
++L V +QL + + +S +A+ ++ L + A M+L+ + + ++P+
Sbjct: 470 YHLDFPVRYQLEVCISHGLLSEYGVNAQFLEKLISFETDRARMMLEGVAEANKQFFEPME 529
Query: 358 -FVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNF 416
F ++ N + P ++ R RA++TP IY P +E +N +++ +
Sbjct: 530 MFDDPRILHYWPNARIPPYATLVR----------RAVITPTTIYFKTPCVELTNRILRKY 579
Query: 417 AKYASDFMRVTFVEEDWSKLPANALSTSIQRG-IFSKPYRTK---IYSRILTILQDGIVI 472
+ F+RV F +E + G IFS K +Y+R+ ++Q+G++I
Sbjct: 580 SDLNDRFLRVQFTDE-------------VTFGKIFSSQDSNKDDNLYTRVHRVMQNGVII 626
Query: 473 GDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSS 532
GD+HY+FLAFS SQ R N + F D V+ +R WMG F IRSV K AARMGQ F++
Sbjct: 627 GDRHYKFLAFSNSQFRENGAFFFCETDHVTCASIRNWMGDFRHIRSVGKFAARMGQCFTT 686
Query: 533 SKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIR 592
++Q + + + I D++ S N + F+DG+GKIS+ FAR +A + L TPS FQ+R
Sbjct: 687 TRQVNGISIPKIRQIGDIQRRSGDNIWNFTDGVGKISVFFARMIASERDLPETPSCFQMR 746
Query: 593 YGGYKGVIAVDRN-SFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLG 651
GG KGV+ V + ++ +R S KF++ L + K S LN+++I +L LG
Sbjct: 747 MGGCKGVVVVWPDIPANEVHIRPSQEKFKAVYNGLEIIKTSTFAHATLNKQVIPVLIALG 806
Query: 652 VKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLS 711
V D VF M +L + L + A ++L+ + + + ++ + + EP+L
Sbjct: 807 VDDAVFVRMLDDELKEYDEALADSMKAGELLRSQVDENQTTLTMAEMVDTFMDSEEPFLW 866
Query: 712 MMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQS 771
+L L LK + I V ++ G DETG+L G +ES Q
Sbjct: 867 TLLRLWKCWVLKRLKQKFAISVKNSAMIFGVVDETGVLR-GHSQDTEGKGFNNIESLPQI 925
Query: 772 FFH----RVDDKTS----IVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFP 823
F D K++ ++ G +V +NP LHPGDVRV+EAV +L + + ++FP
Sbjct: 926 FLQVPIEGSDGKSTTNYEVITGICVVGRNPALHPGDVRVVEAVDVPEL--RHLKNVVVFP 983
Query: 824 QKGERPHPNECSGGDLDGDIFFISWDNDLIPCETE-PPMDYTGRRSRI-MDH--DVTLEE 879
+ G+R P+ CSGGD+DGD +F+ WD LIP E + PP+D+ S +D DVT +
Sbjct: 984 KTGDRDVPSMCSGGDMDGDDYFVYWDERLIPSEWDHPPLDHDADSSTPGLDSPADVTNGD 1043
Query: 880 IHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMP 939
+ +FF YM ND+LG I+TAH AD+ + KC+ LA LHS AVD+ K+G PA M
Sbjct: 1044 VTRFFAQYMKNDSLGRIATAHFAQADQLAGGVKHPKCIELAKLHSKAVDYIKSGKPAVMK 1103
Query: 940 LALKPKEFPDFMEREDKPRYISFGVLGKLY 969
L+P+ +P +MER+ K Y S G LG++Y
Sbjct: 1104 RHLQPRNWPHWMERDKKSSYHSRGALGQIY 1133
>gi|326481841|gb|EGE05851.1| hypothetical protein TEQG_04860 [Trichophyton equinum CBS 127.97]
Length = 1579
Score = 365 bits (938), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 262/881 (29%), Positives = 424/881 (48%), Gaps = 129/881 (14%)
Query: 299 NLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSF 358
++S+ V +QL + + +S D + + L L +L+ + + K++ DP+
Sbjct: 536 HISYAVRYQLEVCISHGFLSEYTIDKDFAKKLESLGERDGKDLLEYVAQEKTVYLDPMEI 595
Query: 359 VKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCY--RALVTPMKIYCLGPELETSNYVVKNF 416
Q G + IP CY A VTP IY P ++TSN V++++
Sbjct: 596 FNIQF-FSGVTNRRIP-----------KYCCYMRSATVTPSTIYFNTPTVDTSNRVIRHY 643
Query: 417 AKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRT---KIYSRILTILQDGIVIG 473
+YA F+RV F +E + G + Y ++++R+ + +GI +G
Sbjct: 644 IEYADRFLRVRFTDEKYE-------------GRINSTYNNCMDEVFTRVKRTMTNGITVG 690
Query: 474 DKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSS 533
D+HYEFLAF SQ R + + FAS ++A ++R WMG F+ I+ V+K AAR+GQ FS++
Sbjct: 691 DRHYEFLAFGNSQFREHGAYFFASLPNLTAANIRAWMGHFSDIKIVAKHAARLGQCFSTT 750
Query: 534 KQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLS----HTPSAF 589
+ PV V I +VE N Y FSDG+G+IS A+ + + L PS F
Sbjct: 751 RAVTGCPVT-VREIDEVE----RNGYIFSDGVGRISKFLAQMIMTEFKLQTPSEEPPSVF 805
Query: 590 QIRYGGYKGVIAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLST 649
Q R GG S + L + +WS+ LNR++I +LS
Sbjct: 806 QFRLGG-------------------------SIHNGLEIIRWSQFAAAHLNRQLIVVLSA 840
Query: 650 LGVKDEVFEAMQQQQLIL--LGKMLINREAALDVLQKLNGVDSKN---ILVKMLLQGYEP 704
LGV DE+F +Q+ +L+L + + + + A+ +LQK VD IL +M+ G++
Sbjct: 841 LGVSDEIF--IQKLRLMLEDMEQAMTSETKAMSMLQKR--VDPNQMTLILAQMVHDGFQG 896
Query: 705 NVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMT--- 761
+ +P++ +L Q+ LK + ++++ +G L GC DET L R ++
Sbjct: 897 SCDPFVKSLLELWRAWQIKYLKEKAKVFIDQGACLFGCLDETATLKGYHEKKRPSIEATY 956
Query: 762 REELESKDQSFFHRVDD----KTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYV 817
E LE + F D+ K +++G ++ +NP LHPGD+RV+ AV L
Sbjct: 957 EERLEYLPEIFVQVFDNEEEKKYRVIEGPCILARNPSLHPGDIRVVRAVNVPALHH--LK 1014
Query: 818 DCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETE---PPMDYTGRRSRIMDHD 874
D I+FPQ G+R P+ CSGGDLDGD + + WD DL+P + PMDYT ++ + D
Sbjct: 1015 DVIVFPQTGDRDVPSTCSGGDLDGDDYIVIWDQDLVPLPKDWFREPMDYTASNAQSLTRD 1074
Query: 875 VTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGA 934
VT+ +I FFV YM ND L I+ AHL AD D +C+ LA LHS AVD+ K+G
Sbjct: 1075 VTVNDITSFFVTYMKNDRLPQIAHAHLAFADYLEDGVNDERCIQLAQLHSAAVDYNKSGI 1134
Query: 935 PAEMPLALKPKEFPDFMEREDKPR---YISFGVLGKLYRATLDSIMQIRSNAIWSEKIAE 991
PA M L P+++P FME++ KP+ Y S +LG++Y + + A + E+I
Sbjct: 1135 PANMTRDLVPRKWPHFMEKKYKPKEAQYQSKKILGQIYDIVERVEFRPKLEAPFDERILN 1194
Query: 992 ASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILT------GNLRNRA 1045
D+ V E + A+ K +Y+ +M +M + TE E+ + N+
Sbjct: 1195 C----DISVS--EDMVLAAKKLKSLYDADMRRIMAQHEIKTEFEVWSTFVLGHANMSKDY 1248
Query: 1046 SYLQRDNRRYGDMKDRIL------LSAKNLQN--------------EAKEWFGSSCKENE 1085
+ + + ++DR L ++ Q+ E + G N
Sbjct: 1249 KFHEELGQISSALRDRFLSMCQDEAGGRDFQHLAPLAVAMYRVTAQEVADALGKEESSNG 1308
Query: 1086 HP---QLASAWYHVTYSPSYCKERMALLSFPWIVGDILLNI 1123
H + + H+ +++ L+SFPW++ +L I
Sbjct: 1309 HDVGNAIKKEYKHLR------NDQIPLISFPWVLQPVLGKI 1343
>gi|156361828|ref|XP_001625486.1| predicted protein [Nematostella vectensis]
gi|156212322|gb|EDO33386.1| predicted protein [Nematostella vectensis]
Length = 531
Score = 364 bits (934), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 218/547 (39%), Positives = 323/547 (59%), Gaps = 41/547 (7%)
Query: 506 VRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQD---VEMIPDVEVTSD------- 555
+R +G +IR V+ +RMGQ FSS+K+++ V + + +E IPDVE +
Sbjct: 1 IRSKLGDLEEIRCVAVFVSRMGQCFSSTKKSVEVSLDNGVRIEKIPDVEKEYNNVLFPCC 60
Query: 556 GNT----YCFSDGIGKISLSFARQVAQKCGLSHT---PSAFQIRYGGYKGVIAVDRNSFR 608
GN Y FSDGIGKIS A +VA+ GL PSA+QIRY G KG++AVD S R
Sbjct: 61 GNVRSGVYIFSDGIGKISKDLANKVAKSLGLEAVEMFPSAYQIRYAGCKGMLAVD-PSLR 119
Query: 609 K--LSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLI 666
L R SM KF+S ++ L + + S + NR+ I+LLS LGV D+ F +Q + L+
Sbjct: 120 GEVLQYRDSMKKFQSSHKALEICEPSRPSELYFNRQCITLLSGLGVPDDEFIRLQDKMLM 179
Query: 667 LLGKMLINREAALDVLQKLNGVDSKNI-LVKMLLQGYEPNVEPYLSMMLLSHHENQLSDL 725
L ML+ +AL+ L +++ + L++ G EP+ MLL+ + ++L DL
Sbjct: 180 DLASMLLYETSALESLGRISIAGGLKVSLIRH--SGIVVTCEPFFRSMLLAIYRSRLGDL 237
Query: 726 KSRCRIYVPK--GRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIV 783
R RI +P+ GRLL+G DETG L+YG+VF+R T EL + Q + +I+
Sbjct: 238 LRRARIAIPESHGRLLMGVLDETGSLDYGEVFIRYTT---ELGNPGQGY--------TIL 286
Query: 784 KGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDI 843
G V+V+KNPC HPGD+R AV L VDCI+FP KG RPH +E SG DLDGD
Sbjct: 287 TGDVVVSKNPCFHPGDMRKFNAVDIPALYH--LVDCIVFPAKGPRPHTDEMSGSDLDGDK 344
Query: 844 FFISWDNDLIP-CETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLV 902
+F +W +IP + EPPMD+ + ++++ + + ++ +F DY+ ND LG I+ AHLV
Sbjct: 345 YFATWLRGIIPDRDNEPPMDFYPPKKKMLNRPIEVSDMIQFVADYIKNDQLGVIANAHLV 404
Query: 903 HADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISF 962
HAD + D S KC+ LA +HS AVDF KTG E+ L+P+++PDFM + DKPRY+S
Sbjct: 405 HADSEQDGIFSDKCIKLAHMHSDAVDFPKTGECPELTKELRPEQYPDFMMKPDKPRYVSH 464
Query: 963 GVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMN 1022
VLGKL++ +S+ + R + + + + D D+ ++G +++L A ++ Y ++
Sbjct: 465 NVLGKLFQKC-NSLERAR-RFMTGDSTKDITVDQDMILEGHQSYLEDAIEQRDRYNAKLE 522
Query: 1023 ALMNYYG 1029
ALM YG
Sbjct: 523 ALMARYG 529
>gi|310791166|gb|EFQ26695.1| RNA dependent RNA polymerase [Glomerella graminicola M1.001]
Length = 1269
Score = 364 bits (934), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 265/856 (30%), Positives = 428/856 (50%), Gaps = 75/856 (8%)
Query: 299 NLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSF 358
+L+ EV +QL + +S + I LS + + A +L+ L +DP+
Sbjct: 361 HLNFEVYYQLEVCISRGVLSEYSITQAFIDELSRMDKDRAKWMLEYFADLAKRVWDPMKM 420
Query: 359 VKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAK 418
+ + S+P + + + VTP ++ P +E+SN V++ +
Sbjct: 421 FEDEDARFFFPNASMP---------YYCTTIRKITVTPSTMHFCSPNVESSNRVLRKYNS 471
Query: 419 YASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYE 478
Y F+RV F +E + +G T+I++RI +L+ GI IG++ YE
Sbjct: 472 YQDRFLRVQFTDE-------------LYKGKVYNNAGTEIFNRIYRVLKQGIKIGNRVYE 518
Query: 479 FLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLV 538
FLAF SQ+R +V+ F + +D+R WMG F+ IR+V+K AAR+GQ FS++++
Sbjct: 519 FLAFGNSQIRECAVYFFCPTAYTTCDDIRQWMGEFSHIRNVAKYAARIGQCFSTTREIRG 578
Query: 539 VPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHT--PSAFQIRYGGY 596
V V + D+E YCFSDG+GKIS A V + G PSAFQ R GG
Sbjct: 579 VTVPRIVQAEDIE----RGGYCFSDGVGKISKLLAEMVVNEMGQESVGIPSAFQFRMGGC 634
Query: 597 KGVIAV--DRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKD 654
KG++AV D ++ +R S KF+++ L + ++++ LNR+ I++L+TLGV+
Sbjct: 635 KGMLAVWPDAKGL-EVHIRPSQEKFKAQFNGLEIIRFAQYSVATLNRQTITILATLGVES 693
Query: 655 EVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLL-QGYEPN--VEPYLS 711
E + +QQ+ K + +R AA +L + + ++ +K L+ G+ EP++
Sbjct: 694 EPILQLAKQQVQNYEKAMRDRVAAAGLLGRYVDENMTSLTIKDLVCWGFMDTEVQEPFVL 753
Query: 712 MMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTRE--ELESKD 769
+L + LK + R+ V + L+GC DETG L + + T RE +E
Sbjct: 754 TILNLWRIWSVKLLKEKARVIVEQSAFLLGCLDETGTL---RGHSKATEGRETRNIEDIP 810
Query: 770 QSFF---HRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKG 826
Q F + D K V G +V +NP LHPGD+RV+EAV L + + ++FP G
Sbjct: 811 QIFLQIPNPDDGKFYCVTGVCIVGRNPSLHPGDIRVVEAVDVPAL--RHLKNVVVFPSIG 868
Query: 827 ERPHPNECSGGDLDGDIFFISWDNDLIPCE-TEPPMDYTGRRSRIMDHD-VTLEEIHKFF 884
+R P+ SGGDLDGD FF+ W+ LIP + +PPMDY ++ ++ V + ++ FF
Sbjct: 869 DRDVPSMLSGGDLDGDDFFVIWNPALIPPQWHQPPMDYVASKAPVLKRGFVKVSDLRTFF 928
Query: 885 VDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKP 944
V YM ND L ++ AHL AD+ AR KC+ LA LHS AVD+ KT PA+ P L+P
Sbjct: 929 VRYMQNDCLALVAVAHLAQADQSQAGARDGKCIKLAELHSKAVDYVKTADPADFPPYLQP 988
Query: 945 KEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGF- 1003
K +P FM R++ Y S +G++Y D + + + E +D+ + ++ F
Sbjct: 989 KRWPHFMNRKNT--YKSLSPIGQIYDMIQDQAL---------DPLYEKKFDNRI-LNRFT 1036
Query: 1004 --EAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNR----ASYLQRDN--RRY 1055
+ L A K Y+ M LM+Y TE E TG + +R + Y Q+++ R
Sbjct: 1037 LTDDLLQKARKVKRQYDTSMRRLMSYRDVKTEFEAWTGFVLSRPRVGSDYKQQEDIGRES 1096
Query: 1056 GDMKDRIL------LSAKNLQNEAKEWFGSSCKENEHPQLASAWYHVTYSPSYCKERMAL 1109
+K R ++N + A F ++ + Q+ +A + ++ M L
Sbjct: 1097 AALKQRFREICYNEAGSRNYDDFAP--FVAAMYKVTEEQVNAALAKEYEDEEHKRQSMPL 1154
Query: 1110 LSFPWIVGDILLNIKS 1125
+SFPWI I+ I +
Sbjct: 1155 ISFPWIFHWIMGRIAT 1170
>gi|398388269|ref|XP_003847596.1| RNA-directed RNA polymerase, partial [Zymoseptoria tritici IPO323]
gi|339467469|gb|EGP82572.1| RNA-directed RNA polymerase [Zymoseptoria tritici IPO323]
Length = 959
Score = 363 bits (931), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 261/801 (32%), Positives = 398/801 (49%), Gaps = 95/801 (11%)
Query: 299 NLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSF 358
+L+ V +QL + + D +Q LS + A+ +L+K+ Y P
Sbjct: 152 HLAFSVHYQLEVCISVGALHESNIDRAFLQRLSTIETVRAVKMLEKIADEGKRIYKPSDI 211
Query: 359 --VKTQLHVLGRN----CKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYV 412
+ ++ V+ + C IP ++ +TP IY P LETSN V
Sbjct: 212 FSLHNRVSVVEKKRPAYCTKIPAAN----------------ITPTTIYFATPVLETSNRV 255
Query: 413 VKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVI 472
V+N+ KY FMRV F +E K S Q +++SRI + GI +
Sbjct: 256 VRNYKKYEDRFMRVKFTDE---KHKGQLQSQDGQA-------MNEVFSRIKQAMTHGIRV 305
Query: 473 GDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSS 532
D+HYEFLAF +Q R + + FAS +++A +R WMG F +I++V+K +R+GQ +++
Sbjct: 306 ADRHYEFLAFGNAQFREHGAYFFASTPDLNANMIRQWMGNFTQIKNVAKYISRLGQCYTT 365
Query: 533 SKQTLVVPVQ-DVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQI 591
++ +P +VE IPDVE N YCF+DG+GKIS AR VA L + PS +Q
Sbjct: 366 TR---AIPHSVNVERIPDVE----RNGYCFTDGVGKISPLLARMVADHFRLDNCPSVYQF 418
Query: 592 RYGGYKGVIAVDRNSFRKLS--LRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLST 649
R G KGV+AVD S + ++ +R S KF + L + K S+ LN ++I ++S+
Sbjct: 419 RMAGCKGVLAVD-PSLKGMTVQIRPSQEKFPAEFHGLEICKMSQFSAANLNVQLILVMSS 477
Query: 650 LGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNI-LVKMLLQGYEPNVEP 708
LGV D VF + L L + + E AL +LQK + I L ++L G+ +P
Sbjct: 478 LGVPDNVFVNKYRDMLADLALAMTDEEMALKLLQKNIDFNQMTIYLATIILDGFMATKDP 537
Query: 709 YLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGIL---------NYGQVFVRVT 759
+ L L LK + R++V +G + G DETG L + G + V T
Sbjct: 538 FTISCLRLWRSWNLKYLKEKARVFVDQGAFVFGVTDETGTLQGQFDGFKTDEGDMAVPPT 597
Query: 760 MTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDC 819
+ + L+ D + ++++G L +NP LHPGD+R++EAV L DC
Sbjct: 598 LPQIFLQIPDPN----AKGGYTVIQGPCLFARNPSLHPGDIRMVEAVDVPALHH--LKDC 651
Query: 820 IIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEE 879
++ PQ G+R N CSGGDLDGD + I WD DL P P+ TG VT+++
Sbjct: 652 VVLPQTGDRDLANMCSGGDLDGDDYLICWDADLFP-----PVSDTG--------PVTVDD 698
Query: 880 IHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMP 939
+ FFV+Y+ N+ LG I++ H AD++ D ++ KCL LA LHS+AVD+ KTG PA +P
Sbjct: 699 MTSFFVNYIKNNKLGQIASHHRFWADKEDDGVKNEKCLQLANLHSLAVDYVKTGVPATLP 758
Query: 940 LALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDL- 998
+ LK K P + E + Y S VLG+LY D + W E +D +
Sbjct: 759 VELKVKARPHWAEARGQ-SYTSRKVLGQLY----DEVKLDNFQPAW-----ELPFDARIL 808
Query: 999 --EVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYG 1056
+ E G E E Y+E M +M YG + E E+ T +++Q +
Sbjct: 809 TADTPTPELIAGATEVKAE-YDETMRRIMKQYGITNEFEVFT-------TFVQSHHNDIN 860
Query: 1057 DMK--DRILLSAKNLQNEAKE 1075
D K ++I + NL+++ KE
Sbjct: 861 DYKFYEKIGEVSMNLRDQFKE 881
>gi|302918417|ref|XP_003052653.1| hypothetical protein NECHADRAFT_91974 [Nectria haematococca mpVI
77-13-4]
gi|256733593|gb|EEU46940.1| hypothetical protein NECHADRAFT_91974 [Nectria haematococca mpVI
77-13-4]
Length = 1250
Score = 362 bits (929), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 250/758 (32%), Positives = 385/758 (50%), Gaps = 51/758 (6%)
Query: 296 PGFNLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDP 355
P +L E+ +QL + ++ E ++ L+ ++ A + L+ L +P
Sbjct: 336 PIIHLPFEIRYQLEVCISRDILNEHTITLEFLEKLASMNPRKARLYLEYLADQGEPVQNP 395
Query: 356 VSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKN 415
+S + N ++ S R+ + + + +VTP I P +E SN V++
Sbjct: 396 MSIFQ--------NPEAEAFSPIARIPQYCAL-VRKVVVTPTTIRFNSPAVEMSNRVMRQ 446
Query: 416 FAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDK 475
+ F+R+ FVEE L + R +K +IY R+L + GI IGD+
Sbjct: 447 YKHIQDRFLRIQFVEE---------LENT--RIAINKDQNDEIYKRVLRTMYQGIRIGDR 495
Query: 476 HYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQ 535
YEFLAF +SQLR N + F + S +D+R WMG F+ I+ V+K AAR+GQ FS++++
Sbjct: 496 VYEFLAFGSSQLRVNGAYFFCPTEHTSCDDIRKWMGQFSHIKVVAKYAARLGQCFSTTRE 555
Query: 536 TLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLS--HTPSAFQIRY 593
+ + IPD+E N +CFSDG+GKIS A+ V + L PSAFQ R
Sbjct: 556 VRGISSPAIREIPDIE----RNGHCFSDGVGKISPFVAQLVNEDMALDIFDKPSAFQFRM 611
Query: 594 GGYKGVIAVDRNS-FRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGV 652
GG KGV+ V ++ ++ +R S KFE+ ++ L + + + LNR+ I +L +LGV
Sbjct: 612 GGCKGVLTVWPDAKGMEVHVRESQKKFEADSKGLEIIRCAGFATATLNRQTIIILESLGV 671
Query: 653 KDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQG---YEPNVEPY 709
+ F + QQL + + + A+++L K N+++ LL+ + EP+
Sbjct: 672 PIKAFTDLLDQQLGSYEQAMQDNGVAIEMLAKFVDEHQTNLVIAELLKAEFKTDELREPF 731
Query: 710 LSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKD 769
+ +L L LK + RI V K ++GC DET L G +++
Sbjct: 732 VINVLSLWRAWSLKILKEKARIQVEKSAFVLGCVDETETLR-GHSKDSEGSKPKDVNMLP 790
Query: 770 QSFFHRVD----DKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQK 825
Q F D +KT I++G +V +NP LHPGD+RV+EAV KL + D ++FP
Sbjct: 791 QIFLQITDSRNYNKTHIIQGVCIVGRNPSLHPGDIRVVEAVDCSKL--RHIKDVVVFPAT 848
Query: 826 GERPHPNECSGGDLDGDIFFISWDNDLIP-CETEPPMDYTGRRSRIMDHDVTLEEIHKFF 884
G+RP PN SGGDLDGD FF+ W+ LIP PMDY + + +D DV ++++ FF
Sbjct: 849 GDRPVPNMLSGGDLDGDDFFVIWEPSLIPKTWNYSPMDYAAPKPKELDRDVNVDDLRNFF 908
Query: 885 VDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKP 944
V Y+ ND L I+T+HL AD+ S KCL LA LHS AVD+ KTG PA + +P
Sbjct: 909 VKYLKNDKLPLIATSHLGFADQ--LGPMSPKCLELAELHSKAVDYPKTGEPATLRRDQQP 966
Query: 945 KEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAE---ASYDHDLEVD 1001
+++P FME+ K Y S LG +Y ++ I+ N IW + Y D E+
Sbjct: 967 RKWPHFMEK--KQFYHSDKALGVIYDKVVNKAKVIQFNPIWDSPFDDRITKKYKLDNEL- 1023
Query: 1002 GFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTG 1039
L A K Y+ + L++ + TE E+ TG
Sbjct: 1024 -----LKAARKVKSQYDTAVRRLLSQHDLKTEFELWTG 1056
>gi|391341002|ref|XP_003744822.1| PREDICTED: probable RNA-dependent RNA polymerase SHL2-like
[Metaseiulus occidentalis]
Length = 1356
Score = 360 bits (924), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 262/798 (32%), Positives = 406/798 (50%), Gaps = 45/798 (5%)
Query: 355 PVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVK 414
P F K ++ + K I +R + + Y+ +TP + PE N +++
Sbjct: 370 PSQFRKFRVQEREKKRKGIADCDSERSL-QGMAIIYKVFLTPSRTILRPPEEHGENRILR 428
Query: 415 NFAKYASDFM-RVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIG 473
++ D+M RV F +++ KL N + + R + + L+DGI I
Sbjct: 429 QVSR---DYMLRVAFRDDNLEKLTHN---------LTREEGRNFLEYFLKGFLRDGIEIE 476
Query: 474 DKHYEFLAFSASQLRNNSVWMFASNDE-VSAEDVRGWMGCFNKIRSVSKCAARMGQLFSS 532
++ YE+LA S+SQLR++ W +A ++ ++ +R MG F+ I++V K AR G FSS
Sbjct: 477 NRTYEYLAASSSQLRDHGCWYYAKDEHGRDSKSIREEMGSFDDIKNVGKKMAREGLCFSS 536
Query: 533 SKQTLVVPVQDVEMIPDVEVTS---DGNTYCFSDGIGKISLSFARQVAQKCGLS---HTP 586
+ +T+ V + + D+ + Y FSDGIGKIS V + S P
Sbjct: 537 TIETVKVSEDECTIEEDITGGAHEKSNKPYTFSDGIGKISAELRDDVCEALKDSLRDKKP 596
Query: 587 SAFQIRYGGYKGVIAVDRN-SFRKLSLRRSMLKFES-RNRMLNVTKWSESMPCFLNREII 644
SAFQIR+ G KG++A D R+L LR+SM+KF S + V K+SE LN++II
Sbjct: 597 SAFQIRFRGAKGMVAFDPCLEGRRLVLRKSMVKFASTSSSSFEVIKYSEDRSLTLNKQII 656
Query: 645 SLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEP 704
++L LGV E+F Q+ +I L+ A + L D ++ + +
Sbjct: 657 TILEQLGVPAEIFLRYQEANIIDFADALLFENQAHERLTASIKKDPDCVIDFSKFREFGM 716
Query: 705 NV--EPYLSMMLLSHHENQLSDLKSRCRIYVP--KGRLLIGCFDETGILNYGQVFVRVTM 760
+V +PY ML+ + +++L+ + RI +P GR L+G DETG L YGQV+VR T
Sbjct: 717 SVVRDPYFRAMLIELYRYIITNLRDKARISIPWGLGRNLLGVIDETGKLEYGQVYVRYT- 775
Query: 761 TREELESKDQSFFHRVDDK-------TSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEE 813
RE+ D + D+ T +VKG+VLVTK PC+HPGDVR+LEAV +L
Sbjct: 776 PREDTSGPDIKVDNNTDEDGVPRQAGTEVVKGRVLVTKCPCVHPGDVRMLEAVDIPELAH 835
Query: 814 KDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCE-TEPPMDYTGRRSRIMD 872
VD I+FPQKG RPHPNE +G DLDGD + + WD + + PM + + +
Sbjct: 836 --LVDVIVFPQKGPRPHPNEMAGSDLDGDEYAVIWDQNFFFADGNHRPMIFDDAPAEPSE 893
Query: 873 HDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKT 932
+ LE+ + F +++ND G IS AHL HADR+ D S KCL LA SM +DFAKT
Sbjct: 894 -SLELEDYYNFICQFILNDNKGTISNAHLAHADREEDGIFSDKCLRLAEKVSMTLDFAKT 952
Query: 933 GAPAEMPLALKPKEFPDFMERED-KPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAE 991
G ++ + K +PDFM+++D K Y S VLGKLYRA+ + ++ + E E
Sbjct: 953 GRLTQLEPSEVVKVYPDFMQKQDHKATYRSEKVLGKLYRASRALEITVKQGSSGCE---E 1009
Query: 992 ASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRD 1051
+ + E++G+E A E YE + +M G +E EI+ + + Y+ +
Sbjct: 1010 RYVNENFELEGWEEKKQDALIFVEKYEHRLTNIMGRMGIQSEAEIMVSIVTQVSKYMSKS 1069
Query: 1052 NRRYGDMKDRILLSAKNLQNEAKEWFGSSCKENEHPQ--LASAWYHVTYSPSYCKERMAL 1109
++++++ L + KE F + ++ + LASA Y + Y P ++
Sbjct: 1070 FHDLEELQEQLERQRFFLNLKMKEDFERMTRGDKDQKMLLASAIYMLVYDPPGGEKLTPF 1129
Query: 1110 LSFPWIVGDILLNIKSVN 1127
PWIV D L + VN
Sbjct: 1130 YGAPWIVFDQLSDCSKVN 1147
>gi|342879234|gb|EGU80489.1| hypothetical protein FOXB_08949 [Fusarium oxysporum Fo5176]
Length = 1391
Score = 360 bits (923), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 266/854 (31%), Positives = 431/854 (50%), Gaps = 81/854 (9%)
Query: 299 NLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSF 358
+L E+ +QL + ++ E ++ L+ + A + L+ + + DP++
Sbjct: 395 HLPFEIRYQLEVCLSRGYLNEHMIGREFLERLANMKPAKARLCLESVADNAQVVIDPMAI 454
Query: 359 VKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAK 418
++ + + G SI +S R+ H + +A++TP I P +E SN V++ +
Sbjct: 455 LE-ESQIDG----SIIMS---RIPSHCCL-IRKAVITPTTIRYTTPTVEMSNRVMRRYKH 505
Query: 419 YASDFMRVTFVEEDWSKLPANALSTSIQRG--IFSKPYRTKIYSRILTILQDGIVIGDKH 476
Y F+++ F EE +++G +K +IY R+L + G+ IGD+
Sbjct: 506 YEDRFLKIQFTEE-------------MEKGRIAVNKDQNDEIYKRVLRSMYKGVRIGDRF 552
Query: 477 YEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQT 536
YEFLAF SQLR N + F + +S +D+R WMG F+ I+ V+K AAR+GQ FS++++
Sbjct: 553 YEFLAFGNSQLRVNGAYFFCPTEHLSCDDIRRWMGQFSHIKVVAKYAARLGQCFSTTREL 612
Query: 537 LVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLS--HTPSAFQIRYG 594
+ + IPD+E N YCF+DGIGKIS A+ +++ L PSAFQ R G
Sbjct: 613 HAISAPATQQIPDIE----RNGYCFTDGIGKISSFLAQLISEDMILDVVARPSAFQFRMG 668
Query: 595 GYKGVIAVDRNSFR--KLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGV 652
G KGV+A+ N + ++ +R S KFES ++ L + + + LNR+ I++L LGV
Sbjct: 669 GCKGVLAIWPNDTKVMEVHIRESQKKFESDSKGLEIIRSAAMATATLNRQTITILECLGV 728
Query: 653 KDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPN--VEPYL 710
F + QL + + + A+D+L K VD NI +L G++ + EP++
Sbjct: 729 PIASFTNLLDHQLRSYELAMEDNDVAIDMLTKF--VDENNI-SDLLRAGFKTDDLQEPFV 785
Query: 711 SMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQ 770
+L L LK + RI V K ++GC DETG L G + + Q
Sbjct: 786 VNVLKLWRSWSLKLLKEKARIQVQKSAFVLGCVDETGTLR-GHSSETEGSEDKATDRLPQ 844
Query: 771 SFFHRVD----DKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKG 826
F D +KT ++ G ++ +NP LHPGD+RV+EAV L D ++FP G
Sbjct: 845 IFIQLSDATHYNKTQVISGVCIIGRNPSLHPGDIRVVEAVDCPALHH--LRDVVVFPSTG 902
Query: 827 ERPHPNECSGGDLDGDIFFISWDNDLIPCE-TEPPMDYTGRRSRIMDHDVTLEEIHKFFV 885
++P PN SGGDLDGD FF+ W+ LIP PPM+Y + +D DVT++++ FFV
Sbjct: 903 DQPVPNMLSGGDLDGDDFFVIWEPTLIPRRWNYPPMNYLAPKPIELDRDVTVDDLRNFFV 962
Query: 886 DYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPK 945
Y+ ND L I+T+HL +D S KCL LA LHS AVD+ KTG PA + +P+
Sbjct: 963 KYLKNDKLPLIATSHLAFSDD--LGPMSPKCLELAELHSKAVDYPKTGDPAVLRRDQQPR 1020
Query: 946 EFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEA 1005
++P FME+++ Y S LG ++ Q++ + IW ++ +D + + FE
Sbjct: 1021 KWPHFMEKKNS--YTSRKALGVIFDKVKGK--QVKFDPIW-----DSPFDQRI-IKKFEL 1070
Query: 1006 ---FLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASY-----LQRDNRR-YG 1056
L A K Y+ + L++ + TE E+ TG ++ + +Q + RR Y
Sbjct: 1071 NRDTLKSARKIKTQYDTSVRRLLSQHALKTEFELWTGFAMSKPAVGSDYKVQEELRREYN 1130
Query: 1057 DMKDRI----LLSAKNLQNEAKEWFGSSCKENEHPQLASAWYH-----VTYSPSYCKER- 1106
++K + +A + E E F ++ + ++ A Y + + + + R
Sbjct: 1131 NLKAAFRQLCIDTAGSKNAEKLEPFVAAMYKVTDEEMKIALYEHHRGVINDAGTLLQPRK 1190
Query: 1107 -----MALLSFPWI 1115
M L+SFPWI
Sbjct: 1191 LEPKSMPLISFPWI 1204
>gi|425780985|gb|EKV18967.1| RNA-directed RNA polymerase (Sad-1), putative [Penicillium digitatum
PHI26]
Length = 1533
Score = 359 bits (922), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 241/721 (33%), Positives = 370/721 (51%), Gaps = 69/721 (9%)
Query: 457 KIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKI 516
+IY+R+ L +GI IGD+HYEFLAF SQ R + + FA + VSA +R WMG FN I
Sbjct: 707 EIYTRVKRTLANGISIGDRHYEFLAFGNSQFREHGAYFFAPDAGVSAATIRAWMGQFNHI 766
Query: 517 RSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQV 576
R+V+K AAR+GQ FS+++ VQ V DV N + FSDG+GK+S A+ V
Sbjct: 767 RNVAKYAARLGQCFSTTRAFTGSSVQ-VATCNDVV----RNGFTFSDGVGKVSKFLAQMV 821
Query: 577 AQKCGL----SHTPSAFQIRYGGYKGVIAVDRNSF-RKLSLRRSMLKFESRNRMLNVTKW 631
+ + +PSAFQ R GG KG++ V + +++ +R S KFE+ L + +W
Sbjct: 822 TSQHNIKTLTGESPSAFQFRLGGAKGMLVVSPDPMPQEVHIRPSQQKFETTQAGLEIIRW 881
Query: 632 SESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQK-LNGVDS 690
S+ LNR++I +LS LG+ D+VF + L +++ N A+++LQK ++ +
Sbjct: 882 SQYSLATLNRQLILVLSALGIPDKVFHSKLNSMLGSFHRVMCNDSKAINLLQKYIDPNQT 941
Query: 691 KNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILN 750
IL +M+ G+ N EP+ + ML L LK + +I + +G L+G DETG+L
Sbjct: 942 TLILAQMVSDGFRQNEEPFANTMLELWKSWHLKHLKEKAKIAIDQGANLLGVMDETGVL- 1000
Query: 751 YGQVFVRVTMTR------EELESKDQSFFH----RVDDKTSIVKGKVLVTKNPCLHPGDV 800
+ + + T+ R ++L + + F + + +++G ++ +NP LHPGD+
Sbjct: 1001 --KGYFKNTLPRRGASYAQKLAALPEIFVQICRLEGNGEYEVIEGLCILARNPSLHPGDI 1058
Query: 801 RVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIP------ 854
RV+ AV +L K D ++ PQ G++ + CSGGDLDGD + I WD DLIP
Sbjct: 1059 RVVRAVNRPEL--KGLRDVVVLPQTGDQDIASMCSGGDLDGDDYLIIWDPDLIPTRWFVE 1116
Query: 855 CETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSS 914
C MDY G ++ +DHDVT++EI FFV YM ND L I+ AHL ADR P
Sbjct: 1117 C-----MDYKGSKAPDLDHDVTVDEITSFFVTYMKNDCLPRIAHAHLAWADRLPRGVWEE 1171
Query: 915 KCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFME-REDKPR--YISFGVLGKLYRA 971
KC+ LA LHS AVD+ K+GA A M +L PK +P FME R +P Y S +LG+LY A
Sbjct: 1172 KCIRLAQLHSDAVDYNKSGAHARMARSLDPKFWPHFMEKRFKRPSSIYKSTKILGQLYDA 1231
Query: 972 TLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGAS 1031
+ + + +I E+ E ++ A K ++ M +M Y +
Sbjct: 1232 VVTPNFVPKLGKPFDSRILESPL-----ASASETYIEYARELKAEFDMNMRQIMAQYEIN 1286
Query: 1032 TEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSCKENEHPQLAS 1091
TE E+ + R ++ RD + D+ + + +++ + G L
Sbjct: 1287 TEFEVWS-TFVLRHGFVIRDYKMQEDLGRIVGTLRRGFRHQCYDKVGRHG--GNISALVI 1343
Query: 1092 AWYHVTYSP---------------------SYCKERMALLSFPWIVGDILLNIKSVNSRK 1130
A Y VT + L+SFPWI D+L ++ + +R+
Sbjct: 1344 AMYRVTQEQVAAALEAQRKEALQREDLSVVEVSSTELPLISFPWIFPDVLGDVATGRARE 1403
Query: 1131 A 1131
A
Sbjct: 1404 A 1404
>gi|13641451|gb|AAK31733.1| suppressor of ascus dominance [Neurospora crassa]
Length = 1638
Score = 359 bits (921), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 257/778 (33%), Positives = 391/778 (50%), Gaps = 76/778 (9%)
Query: 381 LIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASD-FMRVTFVEEDWSKLPAN 439
+I ++ R +TP +IY P +E +N V++ + K+A D F+R+ F +E
Sbjct: 526 MIPNHCAWVRRVTITPTRIYFSTPCVEPTNRVIRQW-KHAQDYFIRIQFTDE-------- 576
Query: 440 ALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASND 499
L I+ G P ++ R+ +L+ G+ +G H++FLAF SQ+R +MF
Sbjct: 577 VLEGRIKSGEAELP----LFLRVYRVLEKGVAMGPWHWKFLAFGNSQIREAGAFMFCEQS 632
Query: 500 EVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTY 559
++ + +R WMG F+ I+ ++K AAR+GQ FS+++ +P + IPDVE DG +
Sbjct: 633 NLTGDMMRAWMGRFSHIKVIAKYAARLGQCFSTTRLVPGIPAPRIVTIPDVE--KDG--F 688
Query: 560 CFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRN-SFRKLSLRRSMLK 618
CF+DG+GKIS A+ VA + PSA+Q R GG KGV+ + ++ +R+S K
Sbjct: 689 CFTDGVGKISPLLAKIVAHDWSIDPPPSAYQFRMGGCKGVLVTWPDVKGMEVHIRKSQEK 748
Query: 619 FESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAA 678
F + L V + S+ LNR+II++LS+LGV D+VF M +QQL + +++ A
Sbjct: 749 FVAEFNGLEVVRCSQFSTATLNRQIIAVLSSLGVPDQVFVDMMEQQLSDFNAAMEDKQKA 808
Query: 679 LDVLQKLNGVDSKN---ILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPK 735
+L+ +D + I+ +ML G+ + EP++ +L + LK + R+ V K
Sbjct: 809 TAILKTF--IDENHMTPIIAEMLAYGFMGSQEPFVRTLLQLWRSWSIKTLKEKARLNVEK 866
Query: 736 GRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTS---IVKGKVLVTKN 792
++GC DETG L G + V E Q F DD ++ G +V +N
Sbjct: 867 SAFVLGCVDETGTLK-GHMKVIEDWKDVSSEKLPQIFLQIPDDVNGGYRVITGTCVVGRN 925
Query: 793 PCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDL 852
P LHPGD+RV+EAV L + D ++FP G+R P+ CSGGDLDGD FF+ WD L
Sbjct: 926 PSLHPGDIRVVEAVDVPAL--RHLRDVVVFPLTGDRDVPSMCSGGDLDGDDFFVIWDPLL 983
Query: 853 IPCE-TEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKA 911
IP E + PPM + + + T+ + FFV YM + L I+ AHL AD + +
Sbjct: 984 IPKERSHPPMISEPIAGKELATEPTVNNLITFFVLYMKYNNLPLIAHAHLATADAEVEGV 1043
Query: 912 RSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLY-- 969
+S KCL LA+LHSMAVD+ KTG AE P L PK +P FME+ ++ Y S LGKLY
Sbjct: 1044 KSPKCLELASLHSMAVDYVKTGVAAEFPRRLDPKTWPHFMEK-NRHTYHSVTALGKLYDM 1102
Query: 970 --RATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNY 1027
R T D M+ + +I + + L + L A K Y+ M +M
Sbjct: 1103 VKRETFD--MKENYQLPFDNRILKHTKCRALR----DGTLAKARRIKSQYDTAMRRVMCQ 1156
Query: 1028 YGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSCKENEHP 1087
+TE E+ T + ++ R Y ++D + + L K+ F CK+
Sbjct: 1157 LEIATEFEVWTAFVMSKP----RVGSDY-KLQDNVGRESSAL----KQHFKDQCKKEAGG 1207
Query: 1088 QL---ASAWYHVTY----------------------SPSYCKERMALLSFPWIVGDIL 1120
L SA Y VTY + + M L+SFPW+ D L
Sbjct: 1208 DLLSFVSAMYRVTYEEVRIALFEAKQPHVRPDGRLGTRKITPKTMPLVSFPWLFWDKL 1265
>gi|396468594|ref|XP_003838211.1| hypothetical protein LEMA_P117350.1 [Leptosphaeria maculans JN3]
gi|312214778|emb|CBX94732.1| hypothetical protein LEMA_P117350.1 [Leptosphaeria maculans JN3]
Length = 1004
Score = 358 bits (920), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 261/836 (31%), Positives = 415/836 (49%), Gaps = 92/836 (11%)
Query: 338 ALMVLQKLHKLKSICYDPVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPM 397
A+ +L+++ + + Y+P+ L + G + +P D+ V+ ++TP
Sbjct: 6 AIHILERVVDKQHVYYEPMDVFS--LKIRGSLKRKVP--------DYCVLQ-RSVVITPT 54
Query: 398 KIYCLGPELETSNYVVKNFAKYASDFMRVTFVEED----WSKLPANALSTSIQRGIFSKP 453
+Y P +ETSN + + +A A F+RV F +E +P N
Sbjct: 55 MMYVASPLMETSNRITRKYAADADRFIRVKFSDEKNEGVLRNMPGNRAEA---------- 104
Query: 454 YRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCF 513
++SR+ + G+V+ ++YEFLAF SQ R + + +A SA+D+R +G F
Sbjct: 105 ----VFSRVHHAMTQGVVVAGRYYEFLAFGNSQFREHGAYFYAPTSSKSADDIRISLGKF 160
Query: 514 NKIRSVSKCAARMGQLFSSSKQTL-VVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSF 572
+ I++V+K AR+GQ FS++++ V +Q+++ DVE N + F+DG+GK+SL
Sbjct: 161 DHIKTVAKFGARIGQCFSTTRKMRNSVILQEID---DVE----RNGHTFTDGVGKLSLFI 213
Query: 573 ARQVAQKCGLSHT----PSAFQIRYGGYKGVIAVDRNSFR-KLSLRRSMLKFESRNRMLN 627
A+ A++ GL + P+ FQ R GGYKGV+A+D + + ++ +R S KF + L
Sbjct: 214 AQMAAKELGLPNPFDDPPTLFQFRLGGYKGVLALDPSIQKSEVHVRPSQHKFVAEYSGLE 273
Query: 628 VTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNG 687
+ + S F NR+II +LS LGV D VF QQ + + + + A+ L+K
Sbjct: 274 IIRSSALATPFFNRQIIMVLSNLGVSDHVFIRKQQNMVNDYENAMSDEQIAVQKLRKHID 333
Query: 688 VDSKNI-LVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDET 746
++ + + M+L G+ + EP++ +L+ + + +LK + RI V G ++GC DE+
Sbjct: 334 MNQTTLTMAGMVLDGFMKSQEPFVMSLLMLWRSHTIKNLKEKARIAVEDGAFVLGCVDES 393
Query: 747 GIL--NYGQVFVRVTMTREELESKDQSFFHRVDDKTS-----IVKGKVLVTKNPCLHPGD 799
+L + R+ TR+E + F +VDD T I++G ++ +NP LHPGD
Sbjct: 394 ALLKGHMDDPQSRLDATRDEKLATLPEIFMQVDDTTKPGHYKIIEGLCVLARNPSLHPGD 453
Query: 800 VRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIP-CETE 858
+RV+ AV L + + ++ PQ GER + CSGGDLDGD + + WD+ L+P
Sbjct: 454 LRVVRAVDIPAL--RHLRNVVVLPQTGERDLASMCSGGDLDGDDYMVLWDSHLLPKIINV 511
Query: 859 PPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLH 918
PPMD+T + + +T E+I FFV YM ND+LG I+ AHL AD D CL
Sbjct: 512 PPMDFTPEKPIETEKPITSEDISDFFVTYMKNDSLGQIAHAHLAQADISADGINDPVCLE 571
Query: 919 LATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPR---YISFGVLGKLYRATLDS 975
LA LHS AVD+ K+G PA M L+PK++P FME++ P Y S +LG LY
Sbjct: 572 LAKLHSQAVDYPKSGIPAMMDRELRPKKYPHFMEKKHLPSNKIYRSRKILGMLYDQVQLV 631
Query: 976 IMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDE 1035
Q + + +++ EA YD +DG + L AE K Y+E + LM +G TE E
Sbjct: 632 DFQPQWENRFDKRVLEA-YD----LDG--SLLQRAEGIKVAYDEALRRLMAKHGIQTEFE 684
Query: 1036 -----ILTGNLRNR----------------ASYLQ-----RDNRRYGDMKDRILLSAKNL 1069
+L N +R A Y + D+ D A
Sbjct: 685 AWSVFVLAHNHESRDYKFAEEFGRTVSALKAQYREVCCQSADSSGVADWSHLGPFVAAMY 744
Query: 1070 QNEAKEWFGSSCKENEHPQLASAWYHVTYSPSYCKERMALLSFPWIVGDILLNIKS 1125
AKE + C+ +A + +E M L+SFPWI L I +
Sbjct: 745 TVTAKEMEAALCECQATKTVAGQQVSAR---TMDQEHMPLISFPWIFASELGKIAT 797
>gi|367042188|ref|XP_003651474.1| hypothetical protein THITE_2048877 [Thielavia terrestris NRRL 8126]
gi|346998736|gb|AEO65138.1| hypothetical protein THITE_2048877 [Thielavia terrestris NRRL 8126]
Length = 1511
Score = 358 bits (918), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 256/850 (30%), Positives = 425/850 (50%), Gaps = 60/850 (7%)
Query: 298 FNLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVS 357
+L +V +QL + ++ + + ++ L L A ++L+ Y+P+
Sbjct: 422 ISLPFDVRYQLEVCISHEILCEYNIQRDFLEKLLELGPNRARLILEYAADKGETIYNPLE 481
Query: 358 FVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFA 417
+K + P + H + D+ + + +VTP +IY P +ET+N +V+ +
Sbjct: 482 LLKDPGAL-----TYYPTTLH--IPDYCAL-VRKVIVTPTRIYFNTPTVETTNRIVRRYK 533
Query: 418 KYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHY 477
+ F+RV F +E L + + R ++Y+R+ ++ GI +G H+
Sbjct: 534 QVQDHFIRVQFTDE---LLEGRIRACEVDRD-------DELYTRVYRVMMQGIRMGRWHW 583
Query: 478 EFLAFSASQLRNNSVWMFASND---EVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSK 534
+FLAF SQ+R N + F + +++ + +R WMG F+ I +V+K AAR+GQ FS+++
Sbjct: 584 KFLAFGNSQIRENGAFFFCQAEGYPDITCDTIRQWMGNFSHISTVAKLAARLGQCFSTTR 643
Query: 535 QTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYG 594
+ + IPDVE +CF+DG+GKIS+ A V+Q + PSAFQ R G
Sbjct: 644 LLRCISSPWIVKIPDVE----KGGFCFTDGVGKISMVLASLVSQDWKIYPPPSAFQFRMG 699
Query: 595 GYKGVIAVDRNS-FRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVK 653
G KGV+ ++ ++ +R S KF + L + + S+ LNR+ I +LS LGV
Sbjct: 700 GCKGVLVTWPDAKGMEVHIRPSQEKFSAEYNGLEIIRCSQFSCATLNRQTILILSCLGVP 759
Query: 654 DEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVD---SKNILVKMLLQGYEPNVEPYL 710
D+VF +M +Q+ + +++ A+++L VD + + +M+L G+ EP++
Sbjct: 760 DDVFTSMMDEQISNYDAAMTDKDKAVELLSSY--VDENMTSTTIARMVLNGFMHTQEPFV 817
Query: 711 SMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESK-- 768
+L + LK + R+ V +G ++GC DETG L + + T R+++
Sbjct: 818 RTLLQLWRSWSIKGLKEKARLIVDQGAFVLGCVDETGSL---RGHSKATEGRKKIAQHHL 874
Query: 769 DQSFFHRVDDKT----SIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQ 824
Q F D + ++ G LV +NP LHPGD+RV+EAV +L + D ++FP
Sbjct: 875 PQIFLQVPDPRDRGAYKVITGLCLVGRNPSLHPGDIRVVEAVDLPQL--RHLRDVVVFPL 932
Query: 825 KGERPHPNECSGGDLDGDIFFISWDNDLIPCE-TEPPMDYTGRRSRIMDHDVTLEEIHKF 883
G+R P+ CSGGDLDGD FF+ WD LIP E + PPM+Y+ +S T + + F
Sbjct: 933 SGDRDIPSMCSGGDLDGDDFFVIWDPKLIPPEWSHPPMNYSAPKSLTEPRASTAKSLATF 992
Query: 884 FVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALK 943
FV +M ND L I+ AHL AD + + A+ KCL LA LHS AVD+ KTG PAE L
Sbjct: 993 FVLFMKNDRLPLIAHAHLATADYEVEGAKHRKCLQLAELHSTAVDYVKTGVPAEWNKKLD 1052
Query: 944 PKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGF 1003
P+++P FME+ Y S VLGKLY + N S H L +
Sbjct: 1053 PRKYPHFMEKPKSKSYHSTSVLGKLYDMVDRVVFDNSDNYKLPFDDRILSRFHPLGSN-- 1110
Query: 1004 EAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRIL 1063
L A K Y+ M +M TE E+ T + ++ R Y +++++
Sbjct: 1111 --ILKEARKIKTQYDIAMRRIMGQLEIRTEFEVWTAFVLSKP----RVGTDY-KVQEKVG 1163
Query: 1064 LSAKNLQNEAKEWFGSSCKENEHPQL--ASAWYHVTYSPSYCKERMALLSF--PWIVGDI 1119
A L+ + ++ +E+ +L A+A Y VT+ + R+AL P ++ D
Sbjct: 1164 REAAGLKKQFRDLCLKVAEEHHFDRLEFAAAMYRVTWE----ETRIALYEARQPHVLPDG 1219
Query: 1120 LLNIKSVNSR 1129
+ ++ +++R
Sbjct: 1220 TVGLRRISAR 1229
>gi|391331492|ref|XP_003740179.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Metaseiulus
occidentalis]
Length = 1286
Score = 358 bits (918), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 265/767 (34%), Positives = 392/767 (51%), Gaps = 71/767 (9%)
Query: 391 RALVTPMKIYCLGPELETSNYVVKNF-AKYASDFMRVTFVEEDWSKLPANALSTSIQRGI 449
R VTP ++ +L T N ++++F ++YA +RV F +++ KL + L+ +
Sbjct: 332 RVFVTPTRMILRFADLHTQNRILRHFDSEYA---IRVCFRDDNLDKLTFSVLNMREKLPF 388
Query: 450 FSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDE-VSAEDVRG 508
+ I S GI IGD+ Y ++A S+SQLR++ VW +A + A +R
Sbjct: 389 LNHVVGDHIRS--------GITIGDRKYMYVAASSSQLRDHGVWFYALDPSGFDAASIRQ 440
Query: 509 WMGCFNKIRSVSKCAARMGQLFSSSKQTL-VVPVQDVE----MIPDVEVTSDGNTYCFSD 563
WMG F+ I +V+ ARMGQ FSS+++T+ V P+++V P+ + YCFSD
Sbjct: 441 WMGDFSNISNVATRMARMGQCFSSTQETVEVTPLEEVHEDDIWYPEQVHPTSKKPYCFSD 500
Query: 564 GIGKISLSFARQVAQKCGLSHT---PSAFQIRYGGYKGVIAVDRN-SFRKLSLRRSMLKF 619
G GKIS S +V L HT PSA QIRY G KG++ +D + R+L LR+SM+KF
Sbjct: 501 GCGKISPSLLSEVWG--SLPHTISQPSALQIRYRGCKGMVCLDPSLEGRQLVLRKSMVKF 558
Query: 620 E-SRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAA 678
E + NR L V KWS M FLNR I++L GVK +VF ++ + ++ + L+ +A
Sbjct: 559 ECNSNRKLEVIKWSAPMNMFLNRPFIAILEHHGVKIDVFLRLELEMILQIADSLVCEASA 618
Query: 679 LDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVP--KG 736
L VL V + + G++ +P+ + ML + L LK + I +P +G
Sbjct: 619 LRVLTSF--VKTPIPFYGLAETGWQLVQDPFFTQMLFDLLKTSLMSLKEKANIAIPVNEG 676
Query: 737 RLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLH 796
R ++G DETG+L YGQVF++ T E+ S F +T +V V+VTK PCLH
Sbjct: 677 RNMLGVVDETGLLEYGQVFIQFT----EMPSAP---FQISQARTRVVDADVVVTKCPCLH 729
Query: 797 PGDVRVLEAVYEMKLEEKDYV-DCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPC 855
PGDVR L AV + E +V DCI+FP KG+ PHP E SG DLDGD + W DLI
Sbjct: 730 PGDVRRLRAV---DIPELHHVRDCIVFPAKGKAPHPFEMSGSDLDGDEYICIWKEDLIFE 786
Query: 856 ETEPPMDYTGRRSRIMD-HDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSS 914
E P Y + ++ + + E+ F Y+ ND +G IS AHL AD+ S
Sbjct: 787 ENVEPYLYDDKPLGVVKPYQRPVHEV-SFLCSYIANDMIGIISNAHLAWADQ--RGLISD 843
Query: 915 KCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMERED-KPRYISFGVLGKLYRATL 973
+CL L S A+DFAKTG ++ KP+ FPDFME+ D K Y S LG LYR T+
Sbjct: 844 ECLALVDKASKALDFAKTGHSVDLHPNEKPERFPDFMEKGDHKHSYQSNKALGILYR-TV 902
Query: 974 DSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTE 1033
IM + +++ LEV G++ F A + Y + + +M+ +G +E
Sbjct: 903 RQIMSVNDT-----QLSSGHKFSPLEVPGWQMFRDDAYAAMRRYNQRLANIMDQHGIMSE 957
Query: 1034 DEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKN--LQNEAKEWF-----------GSS 1080
E+ +G + ++ D R +L+ + L E +E F G+
Sbjct: 958 GEVFSGRIGTLNTF---DASRAEKASVALLVDRQKTALMEETREQFFAELKNDCIVLGAH 1014
Query: 1081 CKENEHP---QLASAWYHVTYSPSYCKERMALLSFPWIVGDILLNIK 1124
E+ Q ASAW+ Y+ A SFPW + +LL K
Sbjct: 1015 AAEDRRMLRLQKASAWFMAAYALQPLTGG-AFYSFPWCIAHVLLEAK 1060
>gi|336463319|gb|EGO51559.1| suppressor of ascus dominance [Neurospora tetrasperma FGSC 2508]
gi|350297473|gb|EGZ78450.1| suppressor of ascus dominance [Neurospora tetrasperma FGSC 2509]
Length = 1633
Score = 357 bits (917), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 255/777 (32%), Positives = 386/777 (49%), Gaps = 74/777 (9%)
Query: 381 LIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANA 440
+I ++ R +TP +IY P +E +N V++ + F+R+ F +E
Sbjct: 530 MIPNHCAWVRRVTITPTRIYFSTPCVEPTNRVIRQWRHAQDYFIRIQFTDE--------V 581
Query: 441 LSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDE 500
L I+ G P ++ R+ +L+ G+ +G H++FLAF SQ+R +MF
Sbjct: 582 LEGRIKSGEAELP----LFLRVYRVLEKGVAMGPWHWKFLAFGNSQIREAGAFMFCEQSN 637
Query: 501 VSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYC 560
++ + +R WMG F+ I+ ++K AAR+GQ FS+++ +P + IPDVE DG +C
Sbjct: 638 LTCDMMRAWMGRFSHIKVIAKYAARLGQCFSTTRLVPGIPAPRIITIPDVE--KDG--FC 693
Query: 561 FSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRN-SFRKLSLRRSMLKF 619
F+DGIGKIS A+ VA + PSA+Q R GG KGV+ + ++ +R+S KF
Sbjct: 694 FTDGIGKISPLLAKIVAHDWSIDPPPSAYQFRMGGCKGVLVTWPDVKGMEVHIRKSQEKF 753
Query: 620 ESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAAL 679
+ L V + S+ LNR+II++LS+LGV D+VF M +QQL + +++ A
Sbjct: 754 VAEFNGLEVVRCSQFSTATLNRQIIAVLSSLGVPDQVFVDMMEQQLSDFNAAMEDKQKAT 813
Query: 680 DVLQKLNGVDSKN---ILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKG 736
+L+ +D + I+ +ML G+ + EP++ +L + LK + R+ V K
Sbjct: 814 AILKTF--IDENHMTPIIAEMLAYGFMESQEPFVRTLLQLWRSWSIKTLKEKARLNVEKS 871
Query: 737 RLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTS---IVKGKVLVTKNP 793
++GC DETG L G + V E Q F DD ++ G +V +NP
Sbjct: 872 AFVLGCVDETGTLK-GHMKVTEDWKDVPSEKLPQIFLQIPDDVNGGYRVITGTCVVGRNP 930
Query: 794 CLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI 853
LHPGD+RV+EAV L + D ++FP G+R P+ CSGGDLDGD FF+ WD LI
Sbjct: 931 SLHPGDIRVVEAVDVPAL--RHLRDVVVFPLAGDRDVPSMCSGGDLDGDDFFVIWDPLLI 988
Query: 854 PCE-TEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKAR 912
P E + PPM + + + T+ + FFV YM + L I+ AHL AD + + +
Sbjct: 989 PKERSHPPMTSEPIAGKELATEPTVNNLITFFVLYMKYNNLPLIAHAHLATADAEVEGVK 1048
Query: 913 SSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLY--- 969
S KCL LA+LHSMAVD+ KTG AE P L PK +P FME+ ++ Y S LGKLY
Sbjct: 1049 SPKCLELASLHSMAVDYVKTGVAAEFPRRLDPKTWPHFMEK-NRHTYHSVTALGKLYDMV 1107
Query: 970 -RATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYY 1028
R T D M+ + +I + + L + L A K Y+ M +M
Sbjct: 1108 KRETFD--MKENYQLPFDNRILKHTKCRALR----DETLTKARRIKSQYDTAMRRVMCQL 1161
Query: 1029 GASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSCKENEHPQ 1088
+TE E+ T + ++ R Y ++D + + L K+ F CK
Sbjct: 1162 EITTEFEVWTAFVMSKP----RVGSDY-KLQDNVGRESSVL----KQHFKDQCKNEAGGD 1212
Query: 1089 L---ASAWYHVTY----------------------SPSYCKERMALLSFPWIVGDIL 1120
L SA Y VTY + + M L+SFPW+ D L
Sbjct: 1213 LLSFVSAMYRVTYEEVRIALFEAKQPHVRPDGRLGTRKITPKTMPLVSFPWLFWDKL 1269
>gi|330935167|ref|XP_003304850.1| hypothetical protein PTT_17559 [Pyrenophora teres f. teres 0-1]
gi|311318353|gb|EFQ87064.1| hypothetical protein PTT_17559 [Pyrenophora teres f. teres 0-1]
Length = 1458
Score = 356 bits (913), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 271/875 (30%), Positives = 427/875 (48%), Gaps = 111/875 (12%)
Query: 298 FNLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVS 357
NL V +QL + + N + + +E ++ L S A+ +L+K+ + I YDP+
Sbjct: 494 MNLDFTVRYQLEACLSNGYLKEHSITSEFLEKLHSDSRR-AICLLEKVVDKQHIYYDPMD 552
Query: 358 FVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALV-TPMKIYCLGPELETSNYVVKNF 416
++ L K IP + + R++V TP ++ P +ETSN +++ +
Sbjct: 553 IFSIRIKSLE---KKIP----------SYCTLQRSVVITPTMMHVASPVMETSNRIIRKY 599
Query: 417 AKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKH 476
A + F+RV F +E T Q ++ R+ ++ GIV+ ++
Sbjct: 600 AADSDRFIRVKFSDE----------KTEGQLRSMPNGKSEAVFDRVRRAMRHGIVVAGRY 649
Query: 477 YEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSK-- 534
YEFLAF SQ R + + +A SA+D+R +G F +I++V+K AR+GQ FS+++
Sbjct: 650 YEFLAFGNSQFREHGAYFYAPTSSKSADDIRLSLGDFTQIKTVAKFGARLGQCFSTTRAM 709
Query: 535 --QTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHT----PSA 588
+ + P+ D+E N + F+DG+GK+S A+ A++ GLS+ PS
Sbjct: 710 REKVKITPIPDIER----------NGHTFTDGVGKLSPFVAKMAAKELGLSNAFDDPPSL 759
Query: 589 FQIRYGGYKGVIAVDRN-SFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLL 647
FQ R GG KGV+A+D N + ++ +R S KF ++ L + + S F NR+II +L
Sbjct: 760 FQFRLGGCKGVLALDLNITGTEVHIRPSQQKFHAKFMGLEIIRSSALATPFFNRQIIVVL 819
Query: 648 STLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQK-LNGVDSKNILVKMLLQGYEPNV 706
S LGV D V QQ+ + + + AL L+K ++ S + M+L G+
Sbjct: 820 SHLGVPDHVIIKKQQEMVNDYETAMTDESIALQKLRKHIDMNQSTLTMAAMVLDGFMKIQ 879
Query: 707 EPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDET----GILNYGQVFVRVTMTR 762
+P++ +L + +LK + RI + G ++GC DET G +N Q R+ TR
Sbjct: 880 DPFMMSLLKLWRACTIKNLKEKARIAIEDGAFVLGCVDETAKLKGHMNDPQS--RLDATR 937
Query: 763 EELESKDQSFFHRVDDKTS-----IVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYV 817
+E + F +VDD I++G ++ +NP LHPGD+RV+ AV +L +
Sbjct: 938 DEKLATLPEIFLQVDDTDKKGHYKIIEGVCILARNPSLHPGDLRVVRAVNIPEL--RHLK 995
Query: 818 DCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETE-PPMDYTGRRSRIMDHDVT 876
+ ++ PQ G+R N CSGGDLDGD + + WD LIP PPMD+T + +D ++
Sbjct: 996 NVVVLPQTGDRDLANMCSGGDLDGDDYMVLWDAALIPKTINVPPMDFTPEKPEEIDGPIS 1055
Query: 877 LEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPA 936
+I +FFV YM NDTLG I+ AHL AD D CL LA LHS AVDF K+G PA
Sbjct: 1056 AADIGEFFVTYMKNDTLGQIAHAHLAQADFRADGVNDETCLALAELHSKAVDFPKSGLPA 1115
Query: 937 EMPLALKPKEFPDFMEREDKPRYI---SFGVLGKLYRATLDSIMQIRSNAIWSEKIAEAS 993
EM L+P+++P FME++ +Y S +LG LY D + + W E
Sbjct: 1116 EMDRELRPRKWPHFMEKKHISQYKIYRSTKILGMLY----DQVQLVDFKPQW-----ENP 1166
Query: 994 YDHDLEVDGFE---AFLGVAESHKEMYEEEMNALMNYYGASTEDE-----ILTGNLRNRA 1045
+D + +D F+ A K Y++ + LM +G TE E +L N +R
Sbjct: 1167 FDKRV-LDAFDLDATMKAKAAEIKSSYDDSLRRLMAKHGIRTEFEAWSVFVLAHNHESRD 1225
Query: 1046 -SYLQRDNRRYGDMKD------RILLSAKNLQNEAKEW----------FGSSCKENEHPQ 1088
+ + R G +K RI A L +E +W + + +E E
Sbjct: 1226 YKFSEEFGRTVGILKAHYRGECRI---AAGLGDELSDWSLLGPFVAAMYTVTAQEME--- 1279
Query: 1089 LASAWYHVTYSPSYCK--------ERMALLSFPWI 1115
A H T + K E M L+SFPW+
Sbjct: 1280 TALVECHTTKTVGGQKAPVRAMDPEHMPLISFPWL 1314
>gi|449301850|gb|EMC97859.1| hypothetical protein BAUCODRAFT_67567, partial [Baudoinia
compniacensis UAMH 10762]
Length = 1035
Score = 355 bits (912), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 253/769 (32%), Positives = 381/769 (49%), Gaps = 76/769 (9%)
Query: 392 ALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFS 451
A++TP + P +ET+N +++ + F+RV F +E + N S
Sbjct: 289 AVITPTSLIISTPVVETTNRIIRKYEHIVDHFLRVKFTDERYKGKVMNN----------S 338
Query: 452 KPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMG 511
+ +I++R+ LQ+GI I +HY+FLAF SQ R N + FAS ++SA D+R MG
Sbjct: 339 DNNQDEIFTRVKRTLQNGIQIAGRHYDFLAFGNSQFRENGAYFFASTPDLSAADIRVAMG 398
Query: 512 CFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLS 571
F I +V+K A+R+GQ FS+++ L V+ V+ + D+ N Y F+DG+GK+S
Sbjct: 399 TFTHITTVAKYASRLGQCFSTTR-GLSYRVR-VDALADIT----RNGYTFTDGVGKVSPF 452
Query: 572 FARQVAQKCGLSHT----PSAFQIRYGGYKGVIAVDRNSFRK----LSLRRSMLKFESRN 623
A+ VAQ G + PS Q R GGYKGV+AVD K + R S +KF +
Sbjct: 453 IAQMVAQTFGFPNAFVDYPSVIQFRLGGYKGVLAVDPTLTGKDNMVIQTRPSQMKFPAVY 512
Query: 624 RMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVL- 682
L + + S+ +LN++II +LS GV+D+VF QQ L L +I+ + A D L
Sbjct: 513 HGLEICRLSQFTAAYLNQQIILVLSARGVEDKVFVVKVQQALKDLQDAMIDEDKAKDQLC 572
Query: 683 QKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGC 742
+K++ + +L +M+ G+ +P++ + + LK + RI+V +G ++GC
Sbjct: 573 KKIDYNHTTLVLAQMIDDGFMAVRDPFMMSCMRLWRSWMVKYLKEKARIFVDEGAFVLGC 632
Query: 743 FDET----GILNYGQVFVRVTMTREELESKDQSFFHRVDDKTS-----IVKGKVLVTKNP 793
DET G N V +T E F ++ D VKG L+ +NP
Sbjct: 633 TDETTTLRGDFNADNHTVDLTDATPLPE-----IFLQIPDVAKKGSYVAVKGVCLLARNP 687
Query: 794 CLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI 853
LHPGD+RV+ A+ L +C++ PQ G+R N CSGGDLDGD F + WD LI
Sbjct: 688 SLHPGDIRVVRAIDVPALHHLK--NCVVLPQTGDRDLANMCSGGDLDGDDFLVIWDKQLI 745
Query: 854 PCE-TEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRD-PDKA 911
P E PMDY + +T++ I FFV YM ++ +G I+ AH AD +
Sbjct: 746 PPEWYHSPMDYQAPEPVKAELPITVDAITSFFVTYMKHNNVGIIACAHRYTADDGFSEGV 805
Query: 912 RSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRA 971
+ KCL LA LHSMAVD+ KTG PA MP L+ +++P + ER K Y S VLG+LY A
Sbjct: 806 KDFKCLQLAQLHSMAVDYMKTGVPAVMPNELRVRKYPHWAERPGKSSYHSRRVLGQLYDA 865
Query: 972 TLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGAS 1031
+Q + + E+I A Y D L A K Y+E + +M YG
Sbjct: 866 VQRIDLQPAWDLPFDERILSA-YQLD------AVLLQAASEVKVRYDEAVQRIMAQYGVE 918
Query: 1032 TEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSCKENEHPQLA- 1090
E EI T +R+ + + D + + + + + Q E G+S +E + ++A
Sbjct: 919 NEFEIWTTFVRSH-NQDENDYKFTEKLGETVTTLKQYYQETCYEKAGTSAQERDWTKIAP 977
Query: 1091 --SAWYHVT--------------------YSP--SYCKERMALLSFPWI 1115
+A Y +T Y P S M +SFPWI
Sbjct: 978 FIAAMYTITAKEVSSAFEESQKTVLRAGQYVPRSSSTVANMPFMSFPWI 1026
>gi|189202022|ref|XP_001937347.1| RNA-directed RNA polymerase Rdp1 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187984446|gb|EDU49934.1| RNA-directed RNA polymerase Rdp1 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 1604
Score = 355 bits (911), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 269/876 (30%), Positives = 422/876 (48%), Gaps = 93/876 (10%)
Query: 298 FNLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVS 357
NL V +QL + + N + + +E ++ L A+ +L+K+ + YDP+
Sbjct: 572 MNLDFTVRYQLEACLSNGYLKEHSITSEFLKKLHS-DPRHAVCLLEKVADKQHTYYDPME 630
Query: 358 FVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALV-TPMKIYCLGPELETSNYVVKNF 416
Q+ L K IP + + R++V TP ++ P +ETSN +++ +
Sbjct: 631 IFGIQIKSLE---KKIP----------SYCTLQRSVVITPTMMHVASPVMETSNRIIRKY 677
Query: 417 AKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKH 476
A + F+RV F +E T Q ++ R+ ++ GIV+ ++
Sbjct: 678 AADSDRFIRVKFSDE----------KTEGQLRSMPNGKSGAVFDRVRRAMRHGIVVAGRY 727
Query: 477 YEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQT 536
Y+FLAF SQ R + + FA +SA D+R +G F +++V+K AR+GQ FS+++
Sbjct: 728 YDFLAFGNSQFREHGAYFFAPTSSMSANDIRLSLGDFTNVKTVAKFGARLGQCFSTTRAM 787
Query: 537 LVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHT----PSAFQIR 592
Q V + P E+ +G Y F+DG+GK+S A+ A++ GLS+ PS FQ R
Sbjct: 788 ----SQKVSIKPIPEIMRNG--YTFTDGVGKLSPFVAKMAAEELGLSNAFDDPPSLFQFR 841
Query: 593 YGGYKGVIAVDRN-SFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLG 651
GG KGV+A+D + ++ +R S KF+++ L + + S F NR+II +LS LG
Sbjct: 842 LGGCKGVLALDPTITGTEVHIRPSQQKFQAKFMGLEIIRSSAFATPFFNRQIIVVLSHLG 901
Query: 652 VKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNI-LVKMLLQGYEPNVEPYL 710
V D V QQ+ + + + A+ L+K ++ + + M+L G+ +P++
Sbjct: 902 VPDHVIIKKQQEMVNDYETAMTDESVAIQKLRKHIDMNQTTLAMAAMVLDGFMKVQDPFM 961
Query: 711 SMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDET----GILNYGQVFVRVTMTREELE 766
+L + +LK + RI + G ++GC DET G +N Q R+ TR+E
Sbjct: 962 MSLLKLWRACTIKNLKEKARIAIEDGAFVLGCVDETAKLKGHMNDPQS--RLDATRDEKL 1019
Query: 767 SKDQSFFHRVDDKTS-----IVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCII 821
+ F +VDD I++G ++ +NP LHPGD+RV+ AV +L+ V ++
Sbjct: 1020 ATLPEIFLQVDDTNKKGHYKIIEGVCILARNPSLHPGDLRVVRAVNIPELQHLKNV--VV 1077
Query: 822 FPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCE-TEPPMDYTGRRSRIMDHDVTLEEI 880
PQ G+R N CSGGDLDGD + + WD LIP PPMD+T + ++ + +
Sbjct: 1078 LPQTGDRDLANMCSGGDLDGDDYMVLWDTALIPKTINAPPMDFTPEKPEEIEGPIGAAHM 1137
Query: 881 HKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPL 940
+FFV YM NDTLG I+ AHL AD D CL LA LHS AVDF K+G PAEM
Sbjct: 1138 GEFFVTYMKNDTLGQIAHAHLAQADSRDDGVNDQTCLALAELHSKAVDFPKSGLPAEMNR 1197
Query: 941 ALKPKEFPDFMEREDKPRYI---SFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYD-H 996
L+PK++P FME++ P Y S +LG LY D + + W + +
Sbjct: 1198 ELRPKKWPHFMEKKHMPEYKIYHSTKILGMLY----DQVQLVDFKPQWENPFDKRILNAF 1253
Query: 997 DLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDE-----ILTGNLRNR-ASYLQR 1050
DLE E A K Y++ + LM +G TE E +L N +R + +
Sbjct: 1254 DLE----ETMKVEAAKIKSSYDDALRRLMAKHGIRTEFEAWSVFVLAHNHESRDYKFSEE 1309
Query: 1051 DNRRYGDMKDRI---LLSAKNLQNEAKEW----------FGSSCKENEHPQLASAWYHVT 1097
R +KD+ A NE +W + + +E E A H T
Sbjct: 1310 FGRTVATLKDQYRGECRKAAGRDNELADWSRLGPFVAAMYTVTAQEME---AALVECHTT 1366
Query: 1098 YS------PSYC--KERMALLSFPWIVGDILLNIKS 1125
+ P+ E M L+SFPW+ L I +
Sbjct: 1367 KTVGGQEAPARAMEPEHMPLISFPWLFPSELGKIAT 1402
>gi|336264581|ref|XP_003347067.1| hypothetical protein SMAC_05269 [Sordaria macrospora k-hell]
gi|380093080|emb|CCC09317.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1703
Score = 355 bits (910), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 254/768 (33%), Positives = 389/768 (50%), Gaps = 76/768 (9%)
Query: 391 RALVTPMKIYCLGPELETSNYVVKNFAKYASD-FMRVTFVEEDWSKLPANALSTSIQRGI 449
R +TP +IY P +E +N V++ + ++A D F+R+ F +E L I+ G
Sbjct: 536 RVTITPTRIYFSTPYVEPTNRVIRQW-RFAQDYFIRIQFTDE--------VLEGRIRSGE 586
Query: 450 FSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGW 509
P ++ R +LQ+GI +G H++FLAF SQ+R +MF +++ + +R W
Sbjct: 587 AELP----LFLRAYRVLQEGIAMGLWHWKFLAFGNSQIREAGAYMFCEQSDLTCDMMRSW 642
Query: 510 MGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKIS 569
MG F+ I+ ++K AAR+GQ FS+++ +P + IPDVE DG +CF+DG+GKIS
Sbjct: 643 MGRFSHIKVIAKYAARLGQCFSTTRLVPGIPAPRIVTIPDVE--KDG--FCFTDGVGKIS 698
Query: 570 LSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRN-SFRKLSLRRSMLKFESRNRMLNV 628
A+ + + L PSAFQ R GG KGV+ + ++ +R+S KF + L V
Sbjct: 699 PLLAKIITHEWSLDRLPSAFQFRMGGCKGVLVTWPDVKGMEVHIRKSQEKFVAEFNGLEV 758
Query: 629 TKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGV 688
K S LNR+ I++LS+LGV D+VF M ++QL ++++ A + L+K V
Sbjct: 759 IKCSAFATATLNRQTIAVLSSLGVPDQVFVDMMEKQLSDYNAAMVDKRKATEYLRKY--V 816
Query: 689 DSKNI---LVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDE 745
D +I + +ML G+ + EP++ +L + LK + R+ V K ++GC DE
Sbjct: 817 DENHITPIIAQMLSYGFMESQEPFVRTLLQLWRSWSIKTLKEKARLSVEKSAFVLGCVDE 876
Query: 746 TGILNYGQVFVRVTMTREELESKDQSFFH---RVDDKTSIVKGKVLVTKNPCLHPGDVRV 802
+ L G + V E Q F V+D ++ G +V +NP LHPGD+RV
Sbjct: 877 SRTLK-GHMKVIEGWKDVPSEKLPQIFLQIPDNVNDGYKVITGTCVVGRNPSLHPGDIRV 935
Query: 803 LEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCE-TEPPM 861
+EAV L + D ++FP G+R P+ CSGGDLDGD FF+ WD L+P E + PPM
Sbjct: 936 VEAVDVPAL--RHIRDVVVFPLTGDRDVPSMCSGGDLDGDDFFVIWDPLLVPNERSHPPM 993
Query: 862 DYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLAT 921
+ + ++ T+ + FFV YM ++ L I+ AH+ AD + D +SSKCL LA
Sbjct: 994 INEPVVGKELANEPTVNNLVTFFVLYMKHNNLPLIAHAHMATADAEMDGVKSSKCLELAI 1053
Query: 922 LHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLY----RATLDSIM 977
LHSMAVD+ KTG PA P L PK +P FME++ + Y S LGKLY R T D M
Sbjct: 1054 LHSMAVDYVKTGVPAVFPKRLDPKSWPHFMEKKKR-DYHSATALGKLYDMVKRETFD--M 1110
Query: 978 QIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEIL 1037
+ + +I + + L + L A K Y+ M +M +TE E+
Sbjct: 1111 KENYELPFDSRILKHTKCRALR----DETLTKARRIKSQYDTAMRRVMCQLEIATEFEVW 1166
Query: 1038 TGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSCKENEHPQL---ASAWY 1094
T + ++ R Y +++ + + L K+ F C++ L SA Y
Sbjct: 1167 TAFVMSKP----RVGSEY-KLQENVGRESSAL----KQHFRDQCRKEAGGDLLSFVSAMY 1217
Query: 1095 HVTY----------------------SPSYCKERMALLSFPWIVGDIL 1120
VTY + + M L+SFPW+ D L
Sbjct: 1218 RVTYEEVRIALHEAKQPHIRPDGSLGTRRITPKTMPLVSFPWLFWDKL 1265
>gi|325088329|gb|EGC41639.1| RNA-dependent RNA polymerase [Ajellomyces capsulatus H88]
Length = 1522
Score = 354 bits (908), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 225/677 (33%), Positives = 360/677 (53%), Gaps = 69/677 (10%)
Query: 300 LSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSFV 359
L V +QL + ++ D + L+ L + A +L+ + K++ Y P+
Sbjct: 531 LPFTVRYQLEVCISQGCLNEYILDETFVLQLAQLGEKKAKELLEHVAMNKAVYYSPMEIF 590
Query: 360 KTQLHVLGRNCKSIPLS---SHKRLIDHNVMSCY--RALVTPMKIYCLGPELETSNYVVK 414
IP +H R+ +H CY A +TP I+ P ++TSN V +
Sbjct: 591 ------------DIPFPDGVTHGRIPEH---CCYMRSADITPSTIHYDIPSVDTSNRVFR 635
Query: 415 NFAKYASDFMRVTFVEEDW-SKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIG 473
++A F+RV F +E + ++ +N+ ++ +++Y+R+ ILQ GI+IG
Sbjct: 636 YHREHADRFLRVRFCDEKYMGRIYSNSNGNNL--------CMSEVYARVTRILQHGIIIG 687
Query: 474 DKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSS 533
D+HYEFLAF SQ R + + FAS ++A ++R MG N I+ V+K AAR+GQ FS++
Sbjct: 688 DRHYEFLAFGNSQFREHGAFFFASLPHLTAANIRAQMGDLNNIKVVAKYAARLGQCFSTT 747
Query: 534 KQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLS----HTPSAF 589
+ PVQ ++ + D+E N Y FSDG+G++S + + G++ PSAF
Sbjct: 748 RAVTSCPVQ-LKEVDDIE----RNGYVFSDGVGRLSHFLTQMIRSDLGINTPSGQPPSAF 802
Query: 590 QIRYGGYKGVIAVDRNSF-RKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLS 648
Q R GG KG++AV ++ +++ +R+S KF + + L + + S LNR++I +LS
Sbjct: 803 QFRLGGCKGILAVSSDAHGQEVHIRKSQYKFAAAHHGLEIIRHSHFSLATLNRQLILVLS 862
Query: 649 TLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKN---ILVKMLLQGYEPN 705
LGV D+VF A + + L + + N E A+ +LQ VD IL M+ G++ +
Sbjct: 863 CLGVPDKVFIAKLRMMMDKLEQAMTNEEQAVHLLQ--THVDPNQMTLILADMVRDGFQGS 920
Query: 706 VEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREEL 765
EP++S +L Q+ LK + +I V +G L+GC DET L R
Sbjct: 921 KEPFVSSLLELWRTWQIKYLKEKAKIAVDEGAFLLGCIDETKTLK--------GYFRSSR 972
Query: 766 ESKDQSFFHRV--------------DDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKL 811
+D ++ RV + K I++G ++ +NP LHPGD+RV++AV L
Sbjct: 973 PGQDATYEERVACLPEIFVQVWRHSEGKYVIIEGVCILARNPSLHPGDIRVVKAVNAPSL 1032
Query: 812 EEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCE-TEPPMDYTGRRSRI 870
D ++ PQ G+R + CSGGDLDGD + + WD D++P + PMDY + +
Sbjct: 1033 HH--LRDVVVLPQTGDRDISSMCSGGDLDGDDYVVIWDQDILPTDWFHDPMDYAAPKPEV 1090
Query: 871 MDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFA 930
+D DVT+++I KF+V+YM ND L I+ AHL AD + ++ KCL LA LHS AVD+
Sbjct: 1091 LDRDVTVDDITKFYVNYMQNDRLPQIALAHLALADYMEEGVKNEKCLQLAALHSAAVDYN 1150
Query: 931 KTGAPAEMPLALKPKEF 947
K+G P ++ LKP+ F
Sbjct: 1151 KSGIPVKLTRNLKPRSF 1167
>gi|452837097|gb|EME39040.1| hypothetical protein DOTSEDRAFT_110589, partial [Dothistroma
septosporum NZE10]
Length = 1155
Score = 353 bits (907), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 258/743 (34%), Positives = 383/743 (51%), Gaps = 79/743 (10%)
Query: 325 ELIQILSGLSMETALMVLQKLHKLKSICYDPVSFVK--TQLHVLGRN----CKSIPLSSH 378
+ ++ L+ + E A+ VL+K+ + YDP ++ +Q+ V+ + C IP +
Sbjct: 353 DFLKRLAAMEPERAVKVLEKIADGRQRYYDPYEILRLQSQVSVVEKKRPAYCTKIPAVT- 411
Query: 379 KRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPA 438
VTP ++ P LETSN VV+ + +Y F+RV F +E
Sbjct: 412 ---------------VTPSTLHFATPVLETSNRVVRQYQQYQDRFLRVKFRDE------- 449
Query: 439 NALSTSIQRG-IFSKP--YRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMF 495
+ +G IF + ++++SRI + G+ IGD+ YEFLAF +SQ R + + F
Sbjct: 450 ------LHKGKIFPQDDHSESEVFSRISRAMTHGVKIGDRIYEFLAFGSSQFREHGAYFF 503
Query: 496 ASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSD 555
AS ++A D+R WMG F I+ V+K AR+GQ FS+++ + ++E I D+E
Sbjct: 504 ASTAALTAADIRKWMGNFTHIKVVAKYCARLGQCFSTTRS--IPHAVNIETISDIE---- 557
Query: 556 GNTYCFSDGIGKISLSFARQVAQKCGLSHT----PSAFQIRYGGYKGVIAVDRNSFRKLS 611
N +CF+DG GKIS AR +A GL ++ PSAFQ R G KGV++VD + R L+
Sbjct: 558 RNGHCFTDGSGKISPFLARLIAHHYGLPNSDDDHPSAFQFRLAGCKGVLSVD-PALRGLT 616
Query: 612 L--RRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLG 669
+ R S KF + L + + S+ +LN +II +LS LGV DEVF A + L
Sbjct: 617 IQIRPSQQKFAAEAFGLEICRISQYSAAYLNMQIILVLSALGVPDEVFIARVRTMLKDFD 676
Query: 670 KMLINREAALDVLQKLNGVDSKNI---LVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLK 726
+ + + + AL +LQK +D + L M++ G+ +P+ + L L LK
Sbjct: 677 EAMKSEDKALILLQK--NIDYNQMTLTLASMIMDGFMETKDPFTTTCLRLWRAWSLKYLK 734
Query: 727 SRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDD-----KTS 781
+ R+ V +G I DETGIL G ++ + + F ++ D K
Sbjct: 735 EKARVLVEEGFFGIASPDETGILR-GYSDDSPSVDEVQKDGDLPEIFLQIPDPDTPGKYI 793
Query: 782 IVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDG 841
++ G + +NP LHPGDVRV+ AV +L K + +I P G+RP N CSGGDLDG
Sbjct: 794 VLLGVCALARNPSLHPGDVRVVRAVDVPELHHKK--NEVILPITGDRPLANMCSGGDLDG 851
Query: 842 DIFFISWDNDLIPCE-TEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAH 900
D F + WD DLIP E PMDYT + VT+ ++ +FFV+Y+ ND L I+TAH
Sbjct: 852 DDFMVIWDKDLIPPERNHEPMDYTSPTPATSEGVVTVADMSRFFVNYIKNDNLARIATAH 911
Query: 901 LVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPR-- 958
AD D + KCL LA LHSMAVD+ KTG PA MP LK K +P + E + K +
Sbjct: 912 RYWADWQDDGVKDPKCLALANLHSMAVDYVKTGVPAYMPADLKVKMWPHWSEPKGKSKRK 971
Query: 959 -YISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDL--EVDGFEAFLGVAESHKE 1015
Y S VLG+LY D + + A W + +D + D E+ L A K
Sbjct: 972 VYTSKKVLGQLY----DEVKRESVVAAW-----DMPFDDRILSACDPTESMLDDAREIKA 1022
Query: 1016 MYEEEMNALMNYYGASTEDEILT 1038
+Y+E + M +G TE E+ T
Sbjct: 1023 LYDEAVRRAMAQHGIKTEFEVFT 1045
>gi|116193483|ref|XP_001222554.1| hypothetical protein CHGG_06459 [Chaetomium globosum CBS 148.51]
gi|88182372|gb|EAQ89840.1| hypothetical protein CHGG_06459 [Chaetomium globosum CBS 148.51]
Length = 1572
Score = 353 bits (907), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 217/603 (35%), Positives = 328/603 (54%), Gaps = 29/603 (4%)
Query: 391 RALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIF 450
+ VTP +I+ P +ET+N VV+ + F+RV F +E L ++ + R
Sbjct: 492 KVTVTPTRIFFSTPTVETTNRVVRRYKDVQDHFIRVQFTDE---LLDGRIRASDVDRD-- 546
Query: 451 SKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDE--VSAEDVRG 508
++Y+R+ ++ GI +G H++FLAF SQ+R N + F ++ + +R
Sbjct: 547 -----DELYARVCRVMTQGIRMGKWHWKFLAFGNSQIRENGAFFFCEPEDGTTTCHSIRE 601
Query: 509 WMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKI 568
WMG F+ I SV+K AAR+GQ FS+++ + + IPD+E ++DG +CF+DG+GKI
Sbjct: 602 WMGNFDHISSVAKLAARLGQCFSTTRLLNCISAPRIVKIPDIE-SNDG--FCFTDGVGKI 658
Query: 569 SLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNS-FRKLSLRRSMLKFESRNRMLN 627
S A V++ + PSAFQ R GG KGV+ ++ ++ +R S KF + L
Sbjct: 659 SFPLASLVSEAWKIDTRPSAFQFRMGGCKGVLVTWPDAKGTEVHVRPSQEKFSAEYNGLE 718
Query: 628 VTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQK-LN 686
+ + S+ LNR+ I +LS LGV D+VF M Q+ + N++ A+++L K ++
Sbjct: 719 IIRCSQFSCPTLNRQTILILSCLGVPDDVFIDMMAGQIASYDTAMTNQDRAIELLSKYVD 778
Query: 687 GVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDET 746
G + + M+L G+ EP++ +L + LK + R+ V +G L+GC DET
Sbjct: 779 GNMTTTTIATMILNGFMHTREPFVRTLLQLWRSWSIKGLKEKARLVVDQGAFLLGCVDET 838
Query: 747 GILNYGQVFVRVTMTREELESKD-QSFFHRVDDKTS-----IVKGKVLVTKNPCLHPGDV 800
G L + R T R + D F +V D+ +V G +V +NP LHPGD+
Sbjct: 839 GTL---RGHSRATEGRNGITQNDLPQIFLQVPDRKDRGAYKVVTGICIVGRNPSLHPGDI 895
Query: 801 RVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCE-TEP 859
RV+EAV +L + D ++FP KG+R P+ CSGGDLDGD FF+ WD LIP E + P
Sbjct: 896 RVVEAVDVPEL--RHLRDVVVFPLKGDRDVPSMCSGGDLDGDDFFVIWDPKLIPPEWSHP 953
Query: 860 PMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHL 919
PM+YT + + + FFV +M ND L I+ AHL AD + A+ KCL L
Sbjct: 954 PMNYTAPEPLNESQESIVNSLAFFFVLFMKNDRLPLIAHAHLATADYEVTGAKHWKCLQL 1013
Query: 920 ATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQI 979
A+LHS+AVD+ KTG PA L P+++P FME+ Y S VLGKLY +
Sbjct: 1014 ASLHSIAVDYVKTGIPARWNKKLDPRKYPHFMEKAKAKSYRSTSVLGKLYDMIDKEVFDN 1073
Query: 980 RSN 982
R N
Sbjct: 1074 RDN 1076
>gi|339242799|ref|XP_003377325.1| RNA dependent RNA polymerase family protein [Trichinella spiralis]
gi|316973886|gb|EFV57430.1| RNA dependent RNA polymerase family protein [Trichinella spiralis]
Length = 1417
Score = 353 bits (906), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 244/775 (31%), Positives = 406/775 (52%), Gaps = 72/775 (9%)
Query: 387 MSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDF-MRVTFVEEDWSKLPANALSTSI 445
+S + ++TP ++ P+ SN +++ F SD +RV F +E +++PA+ S +
Sbjct: 396 VSVRKVVITPTRVLLSVPDKMMSNRILRQFG---SDLALRVIFRDEGGTRIPASKFSLTS 452
Query: 446 QRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAED 505
+ I + T++ G+ IG + Y+FL +S SQLR++ + +AS ++V+ E+
Sbjct: 453 LKQI------------VTTVMMKGLAIGPRLYQFLGWSNSQLRDHGCYFYASTEQVNVEE 500
Query: 506 VRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQ--DVEMIPDVEVTSDGNTYCFSD 563
+R WMG F+ IRSV K +RMGQ F+ + +P E++ + ++ S + +CFSD
Sbjct: 501 IRRWMGDFSSIRSVPKLMSRMGQCFTQAFAITAIPFNPDSKEVLIETDIQSSDSKFCFSD 560
Query: 564 GIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVD--RNSFRKLSLRRSMLKFES 621
GIG++S A +VA++ L PSAFQIRY G+KG++ VD + K+ R+SM KF +
Sbjct: 561 GIGRMSTKLAEEVAERLELWPVPSAFQIRYAGFKGMLCVDPRLDGDVKMVFRQSMHKFHT 620
Query: 622 RN-RMLNVTKWSESMPCFLNREIISLLSTLGVKDEV---------FEAMQQQQLILLGKM 671
L + K S+ LNR +I +L + K+ V + QQ+ L +M
Sbjct: 621 EGAHTLEIVKHSQPCEVNLNRPLIMILDQVAFKEGVPVNGRVQNRIMQLLDQQICELSQM 680
Query: 672 LINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRI 731
L+ + A VL + S+ K+ G+ EP+ MLL+ ++ ++ + R +I
Sbjct: 681 LLFEDQAKSVLSA--TMHSEMNFEKLADAGFRFTEEPFFRNMLLACYKFKVKEKLFRMKI 738
Query: 732 YVPK--GRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLV 789
+ GR + G DE G+L+ GQVF++ + R + ++ GKV+V
Sbjct: 739 EIDPSLGRTMYGVMDELGLLHPGQVFIQCSAN-----------ILRPGEDKRVITGKVMV 787
Query: 790 TKNPCLHPGDVRVLEAVYEMKLEEKDYV-DCIIFPQKGERPHPNECSGGDLDGDIFFISW 848
TK+P + PGDVR+L AV LE Y+ D I+FP+ G RP ++ +G DLDGD + + W
Sbjct: 788 TKSPSVVPGDVRILTAV---DLEIYHYLNDVIVFPKIGYRPVTDQMAGSDLDGDEYAVIW 844
Query: 849 DNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDP 908
D +L+ C P M Y S +D D+T +++ FF+ Y+ +D++G I+ AHLV +D
Sbjct: 845 DEELMFCNNYPAMLYEKVISSEIDGDITSDKMVDFFLHYICSDSIGRIAIAHLVASDSYG 904
Query: 909 DKARSSKCLHLATLHSMAVDFAKTG-APAEMPLALKPKEFPDFMEREDKPRYISFGVLGK 967
S C +A HSMAVDF K+G P ++ P ++PD++ + Y S +LG
Sbjct: 905 IFDDVSNC--IARKHSMAVDFPKSGVTPPKLENDEIPLKYPDYIPKCYNSLYRSKWLLGS 962
Query: 968 LYRAT--LDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALM 1025
LYR L+SI ++ + K+ D L++ + F A + + Y+ E+++L+
Sbjct: 963 LYRKVYMLNSIAELS----LARKVTTGKSDPHLKIAEAKNFEEKARAIFQRYKSELHSLL 1018
Query: 1026 NYYGASTEDEILTG---NLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSS-- 1080
+ YG E +++TG + +R S +RD+ Y + + + + LQ + K+ F S
Sbjct: 1019 DEYGIENEFQLITGKITKMHSRLSDGERDDFSYYNTEKVLKVRLGMLQKKYKKLFVSQFS 1078
Query: 1081 --------CKENEHPQLASAWYHVTYSPSYCKERMALLSFPWIVGDILLNIKSVN 1127
E ASAWY V Y + R A LSFPW+V ++LL++K N
Sbjct: 1079 SVVSKEQLANYTEVQAAASAWYSVAYRDAEISNRTA-LSFPWLVWEVLLDLKLKN 1132
>gi|361125379|gb|EHK97425.1| putative RNA-dependent RNA polymerase 1 [Glarea lozoyensis 74030]
Length = 1213
Score = 352 bits (903), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 234/690 (33%), Positives = 360/690 (52%), Gaps = 45/690 (6%)
Query: 298 FNLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLS---METALMVLQKLHKLKSICYD 354
+L EV +QL + + ++ D E I+ L+ L+ TA +L+ + + Y+
Sbjct: 162 ISLPFEVRYQLEVCISRELLNEYNLDREFIEKLAELAKSDASTARNILEYVAENDKRIYE 221
Query: 355 PVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVK 414
P LH+ N S K I H +A +TP I P +ET+N V++
Sbjct: 222 P-------LHLF--NSPEALAFSVKTDIPHYCAYSRKATITPSTILFSSPTVETTNRVLR 272
Query: 415 NFAKYASD--FMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVI 472
++++ D F+RV F +E + N+ IF++ YRT L +GI I
Sbjct: 273 HYSRENHDGRFLRVQFTDESFEG-KINSCVKQRNDEIFTRVYRT---------LANGIRI 322
Query: 473 GDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSS 532
GD+HY+FLAF SQ R N + F ++ ++ D+R WMG F I +K AAR+GQ FS+
Sbjct: 323 GDRHYKFLAFGNSQFRENGAYFFCEDEHLTCNDIRDWMGNFTHINVPAKYAARLGQCFST 382
Query: 533 SKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGL--SHTPSAFQ 590
++ + + IPD+E Y +SDG+GKIS A+ + + GL +H PSAFQ
Sbjct: 383 TRAINGLSAPTIVTIPDIE----HGKYTYSDGVGKISPFLAQMITAELGLHVAHEPSAFQ 438
Query: 591 IRYGGYKGVIAVDRNSF-RKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLST 649
R GG KG++ ++ R++ +R+S KF + L + + S+ LNR+ I+LLS
Sbjct: 439 FRLGGCKGILVTWPDAKDREVHIRKSQQKFTAVYNGLEIIRCSQYSCATLNRQTITLLSN 498
Query: 650 LGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPY 709
LGV D VF M ++QL + N A+++L + +D + + + +P+
Sbjct: 499 LGVGDGVFLKMMKEQLSGYQNAMENDNLAIELLCRF--IDDNRMTINIAKMISSDIKDPF 556
Query: 710 LSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGIL-NYGQVFVRVTMTREELESK 768
+S +L + LK + +I V KG + GC DET L Y EE +
Sbjct: 557 VSSLLHLWRSWSIKLLKEKAKIVVEKGAFVFGCVDETHTLRGYKAPSTEGDAIPEEQLPQ 616
Query: 769 D--QSFFHRVDDKT---SIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFP 823
Q H D K ++++G LV +NP LHPGD+R+ +A+ L D ++FP
Sbjct: 617 IFIQVPVHGCDPKNPVYNVIEGICLVGRNPSLHPGDLRICQAIDVPALHH--LRDVVVFP 674
Query: 824 QKGERPHPNECSGGDLDGDIFFISWDNDLIPCETE-PPMDYTGRRSRIMDHDVTLEEIHK 882
G+R P+ CSGGDLDGD +F+ WD DL P E PMDY ++ + V ++++ +
Sbjct: 675 SCGDRDVPSMCSGGDLDGDDYFVIWDKDLQPHEWNCSPMDYDAPPAKSQRNPVAVKDLMQ 734
Query: 883 FFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLAL 942
FV YM ND+L I+ AHL AD+ P A++ KC+ LA LHS AVD+ K+G AEMP L
Sbjct: 735 HFVRYMKNDSLPQIAHAHLAQADQLPGGAKNPKCIQLAHLHSKAVDYVKSGHAAEMPKDL 794
Query: 943 KPKEFPDFMEREDKPR---YISFGVLGKLY 969
+P+ +P FME+ K + Y S +LG+LY
Sbjct: 795 QPRRWPHFMEKRHKRKDQLYESTTILGQLY 824
>gi|380480880|emb|CCF42174.1| RNA dependent RNA polymerase [Colletotrichum higginsianum]
Length = 1271
Score = 351 bits (901), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 264/851 (31%), Positives = 413/851 (48%), Gaps = 65/851 (7%)
Query: 299 NLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSF 358
+L EV +QL + +S A E + L + A +L+ + ++P+
Sbjct: 363 DLKFEVFYQLEVCISRGVLSEYAITQEFVNQLHRMDKNRAKWMLEYFADQGARVWNPMEM 422
Query: 359 VKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAK 418
K + S+P + + + +VTP ++ P +E SN V++ ++
Sbjct: 423 FKNEEARFFFPNASMP---------YYCTTIRKVIVTPSTMHFCSPSVEASNRVLRKYSS 473
Query: 419 YASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYE 478
+ F+RV F +E + +G +++ RI L+ GI IG++ YE
Sbjct: 474 HQDRFIRVQFTDE-------------LYKGKIYNDAGDEVFDRIYRALKRGIKIGNRIYE 520
Query: 479 FLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLV 538
FLAF SQ+R +V+ F D V+ +D+R WMG FN I++V+K AAR+GQ FS++++
Sbjct: 521 FLAFGNSQIRECAVYFFCPTDYVTCDDIRKWMGEFNHIKNVAKYAARIGQCFSTTREIRG 580
Query: 539 VPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHT--PSAFQIRYGGY 596
+ V +E D++ YCFSDG+GKIS A V + G PSAFQ R GG
Sbjct: 581 ITVPRIEQAKDIQ----RGEYCFSDGVGKISKLLAEMVVNEMGQEAVGIPSAFQFRMGGC 636
Query: 597 KGVIAV--DRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKD 654
KG++AV D ++ +R S KF+++ L + K ++ LNR+ I++L+TLGVK
Sbjct: 637 KGMLAVWPDAKGL-EVHIRPSQEKFKAQFNGLEIIKSAQYSVATLNRQTITILTTLGVKS 695
Query: 655 EVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLL-QGY--EPNVEPYLS 711
E + +QQ+ K + ++ AA +L K + ++ +K L+ G+ + EP++
Sbjct: 696 EPILKLAKQQIQNYEKAMDDQVAATGLLGKYIDENMTSLTIKDLVCWGFMDKEVQEPFVL 755
Query: 712 MMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQS 771
+L + LK + R+ + + L+GC DETGIL G T + Q
Sbjct: 756 TILNLWRIWSMKLLKEKARVIIEQSAFLLGCLDETGILR-GHSKATEGKTTRNIHDLPQI 814
Query: 772 FF---HRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGER 828
F + D K V G +V +NP LHPGD+RV+EAV L V ++FP G+R
Sbjct: 815 FLQIPNSEDGKHYCVTGVCIVGRNPSLHPGDIRVVEAVDVPTLHHLKNV--VVFPSIGDR 872
Query: 829 PHPNECSGGDLDGDIFFISWDNDLIPCE-TEPPMDYTGRRSRIMDHD-VTLEEIHKFFVD 886
P+ SGGDLDGD FF+ W+ DLIP E PPM+Y R++++ V + ++ FFV
Sbjct: 873 DVPSMLSGGDLDGDDFFVIWNPDLIPREWHHPPMNYIAPRAKVLRRGFVKVSDLRTFFVR 932
Query: 887 YMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKE 946
Y+ ND L ++TAHL AD A+ +CL LA LHS AVD+ KT PA+ P L PK
Sbjct: 933 YIQNDCLALVATAHLALADHSRVGAKDHRCLKLAELHSKAVDYVKTADPAKFPPDLHPKA 992
Query: 947 FPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAF 1006
+P FM R + Y S LG++Y D I N ++ K D
Sbjct: 993 WPHFMNR--RCTYRSSSALGQIY----DMIQDQSLNPLYGNKFDTRILTRFPLSD---EI 1043
Query: 1007 LGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSA 1066
L A K Y+ + LM++ TE E TG + ++ + D +++ D+
Sbjct: 1044 LRKARKVKTQYDTSLRRLMSHRDVQTEFEAWTGFVLSKPR-VGSDYKQHEDIGRESSALK 1102
Query: 1067 KNLQNEAKEWFGSSCKENEHPQLASAWYHVT---YSPSYCKE---------RMALLSFPW 1114
+ + + GS ++ P +A Y VT + + KE M L SFPW
Sbjct: 1103 QRYREICYKEAGSRHYDDFAP-FVAAMYKVTEEQVNAALAKEYEDEEHKRHSMPLTSFPW 1161
Query: 1115 IVGDILLNIKS 1125
I I+ I +
Sbjct: 1162 IFHWIMGRIAT 1172
>gi|340975703|gb|EGS22818.1| RNA-directed RNA polymerase-like protein [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 1626
Score = 350 bits (897), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 232/727 (31%), Positives = 370/727 (50%), Gaps = 53/727 (7%)
Query: 332 GLSMETALMVLQKLHKLKSICYDPVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYR 391
G+ + A ++L+ +DP+S Q L ++ + SH L+ +
Sbjct: 523 GMEVSRARLILEYAADQGKRIWDPMSLFSDQA-ALSYCPTTLHIPSHCALV-------RK 574
Query: 392 ALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFS 451
+TP +IY P +ET+N VV+++ ++ F+RV F +E + G
Sbjct: 575 VTITPTRIYFSTPTVETTNRVVRHYGRFRDYFIRVQFTDE-------------VMEGRIR 621
Query: 452 KPYRTK---IYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDE----VSAE 504
Y + +Y+R+ +L+ GI +G H++FLA+ SQ+R + F +E ++ +
Sbjct: 622 SSYTDREDNVYARVFRVLRHGIRMGKWHWKFLAYGNSQIRECGSFFFCEPEEAHGTITCD 681
Query: 505 DVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDG 564
+R WMG F+ I+S++K AAR+GQ FS+++ + + DVE N YCF+DG
Sbjct: 682 SIREWMGRFSHIKSIAKLAARLGQCFSTTRPLPGITAPTIIKTQDVE----RNGYCFTDG 737
Query: 565 IGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNS-FRKLSLRRSMLKFESRN 623
+GKIS A +A+ + TPSAFQ R GG KGV+ ++ ++ +R S KF +
Sbjct: 738 VGKISPLLAFFIAEDWKVYPTPSAFQFRMGGCKGVLVTWPDAKGTEVHIRPSQEKFSAEF 797
Query: 624 RMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQ 683
L + + S LNR+ I++LS LGV VF M ++QL + + + A+D+L
Sbjct: 798 NGLEIIRCSHFSCATLNRQTITILSCLGVPSYVFLDMMEEQLANYDAAMEDPDKAIDLLT 857
Query: 684 KLNGVDSKNI-LVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGC 742
+ + + +M+L G+ EP++ +L + LK + R+ V KG ++GC
Sbjct: 858 TYVDENMTTLTMSEMVLDGFMETREPFVRSLLQLWRAWSIKALKEKARLVVKKGAFVLGC 917
Query: 743 FDETGILNYGQVFVRVTMTREELESKDQ--SFFHRVDDKTS-----IVKGKVLVTKNPCL 795
DETG L T + + +DQ F +V D + ++ G LV +NP L
Sbjct: 918 VDETGTLRGHSRATEGTKNQPKEVRRDQLPQIFLQVPDHENGGTYKVITGLCLVGRNPSL 977
Query: 796 HPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPC 855
HPGD+R++EAV +L + D ++FP +G+R P+ CSGGDLDGD +F+ WD L P
Sbjct: 978 HPGDIRMVEAVDVPQL--RHLRDVVVFPLQGDRDVPSMCSGGDLDGDDYFVIWDEKLFPK 1035
Query: 856 E-TEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSS 914
E + PPM+Y ++ + + +FFV +M ND L I+ AHL AD+ P+ A++
Sbjct: 1036 EWSYPPMNYEAPKAPEEKEVMVANNLAEFFVLFMKNDRLPLIAHAHLATADKHPEGAKTE 1095
Query: 915 KCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLD 974
KCL LA LHS AVD+ KTG A+ L P+ +P FME+ Y S VLG+LY
Sbjct: 1096 KCLELAQLHSTAVDYVKTGVAAKWEKRLDPRTYPHFMEKSRARTYYSKSVLGQLYDMVER 1155
Query: 975 SIMQIRSN--AIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGAST 1032
+ I+ N + E+I + ++L D L A K Y+ M +M T
Sbjct: 1156 QVFDIQENYKLPFDERIIKR---YELNDD----LLRQARKLKSQYDIAMRRIMGQLEIRT 1208
Query: 1033 EDEILTG 1039
E E+ T
Sbjct: 1209 EFEVWTA 1215
>gi|297737620|emb|CBI26821.3| unnamed protein product [Vitis vinifera]
Length = 943
Score = 349 bits (896), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 226/629 (35%), Positives = 332/629 (52%), Gaps = 78/629 (12%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKA 64
T+ V +P A ++ FLE G+ ++ ALEI +S S +VQFTSL
Sbjct: 4 TIQVYGVPSNVSANEIKEFLEKYTGEGTIEALEIKQPKSG-VSMTHAKVQFTSLRLAELI 62
Query: 65 QNLSLNDKLVFNSQNLKISETHSDIVPRPVKAQHRVEDGVLHVGVMCKEERLRVLQTFEG 124
+SL +L + LK E DI+P+P H ++ LH G ER + + E
Sbjct: 63 --ISLAKQLWYGGNYLKAREMDLDIIPKPRTFLHSMDRITLHFGYQMSNERFCL--SCEN 118
Query: 125 VRGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFSLDEG 184
+ WQ ++E + G
Sbjct: 119 I----------------------WQIQLREPR---------------------------G 129
Query: 185 ATVNGILFKLKYGPKIYQK-VSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKSIGC 243
+L +L P+IY+K VS + P D+ WVR DF+ + SIG
Sbjct: 130 QNTKFLLIQLLDAPQIYEKDVSALSYFKETPDDQ-----------WVREIDFTPSCSIGQ 178
Query: 244 STSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTTSEIVPLVKCRPGFNLSHE 303
S++ E+ +G + F YKE+ ILE G F +VP+V G NL +
Sbjct: 179 SSALCLELPHGSQLPNFCENFARYKENDRKFILESGASFSGNLHLVPIVGPPQGSNLPFK 238
Query: 304 VLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALM--VLQKLHKLKSICYDPVSFVKT 361
+LF++N+LV N +S D + + + + + L+KL+ L+ CY+PV ++
Sbjct: 239 ILFKINTLVQNGCLSGPTLDTNFFRWVDPQRINISFIEHALEKLYYLEECCYEPVRWLHE 298
Query: 362 QLHV-LGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYA 420
Q + + P S +D ++ R +TP K+Y GPE+ SN V++N+ +
Sbjct: 299 QYRTYISKQVAGSPAIS----LDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDI 354
Query: 421 SDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFL 480
+F+RV+F++E+ K+ + +S + ++ RT +Y RIL+ILQ+GIVIGDK ++FL
Sbjct: 355 DNFLRVSFLDENSEKIHSTVISPRMS----NEGRRTGVYRRILSILQNGIVIGDKKFDFL 410
Query: 481 AFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVP 540
A S+SQLR+NS WMFAS ++A D+R MG F++IR+V+K AAR+GQ FSSSK+TL V
Sbjct: 411 AVSSSQLRDNSAWMFASRPGLTAADIRSRMGDFSQIRNVAKYAARLGQSFSSSKETLKVA 470
Query: 541 VQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSH-TPSAFQIRYGGYKGV 599
++E+IPD+E DG TY FSDGIGKIS A +VA KCG + TPSAFQIRYGGYKGV
Sbjct: 471 KHEIEIIPDIETHRDGTTYVFSDGIGKISAELAHRVAIKCGCKNSTPSAFQIRYGGYKGV 530
Query: 600 IAVDRNSFRKLSLRRSMLKFESRNRMLNV 628
+AVD S RKLSLR+SM K+ES N L++
Sbjct: 531 VAVDPTSSRKLSLRKSMFKYESENTNLDL 559
Score = 310 bits (795), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 164/354 (46%), Positives = 224/354 (63%), Gaps = 18/354 (5%)
Query: 782 IVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDG 841
I++GKV+V KNPCLHPGDVR+L AV L VDC++FPQKG RPHP+ECSG DLDG
Sbjct: 582 ILEGKVVVAKNPCLHPGDVRILSAVDVPALHH--MVDCVVFPQKGMRPHPDECSGSDLDG 639
Query: 842 DIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHL 901
DI+F+ WD+DLIP PMDYT ++++DHDV +EE+ ++F +Y+ ND LG I+ AH
Sbjct: 640 DIYFVCWDHDLIPPRQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIGNDKLGIIANAHT 699
Query: 902 VHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYIS 961
V AD++ DKA C LA L S+A++F KTG PAE+P L KE+PDFME+ +KP Y S
Sbjct: 700 VFADKEYDKALCPPCKELAKLFSIALEFPKTGVPAEIPFHLHVKEYPDFMEKANKPTYES 759
Query: 962 FGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEM 1021
V+GKL+R D ++ +A SYD D+EVDGFE ++ A +K Y+ ++
Sbjct: 760 QSVIGKLFREVKDVAPHNYDVRSFTRDVAMQSYDADMEVDGFEDYVRDAFYYKSQYDFKL 819
Query: 1022 NALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWF---- 1077
+LM+ G TE EIL+G++ + D R+ + I L+ ++L+ EA+ WF
Sbjct: 820 GSLMDCCGIRTESEILSGSIMKMSKSF--DKRKDAEA---IALAVRSLRKEARTWFNKMG 874
Query: 1078 -GSSCKENEHPQLASAWYHVTYSPSY--C-KERM---ALLSFPWIVGDILLNIK 1124
G+ ++ +ASAWYHVTY P Y C E M LSFPW V D L+ IK
Sbjct: 875 SGTYAGADDVYAIASAWYHVTYHPYYWGCYNEGMYHDHFLSFPWCVYDKLIQIK 928
>gi|156379597|ref|XP_001631543.1| predicted protein [Nematostella vectensis]
gi|156218585|gb|EDO39480.1| predicted protein [Nematostella vectensis]
Length = 523
Score = 347 bits (889), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 206/534 (38%), Positives = 310/534 (58%), Gaps = 18/534 (3%)
Query: 506 VRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGI 565
+R WMG F+ IR V +RMGQ FS+S T+ + V +E + ++ ++ +Y F+DGI
Sbjct: 1 IRRWMGDFSSIRCVGTYVSRMGQCFSTSLDTVGITVDGIECLEKDDIQTEEKSYTFTDGI 60
Query: 566 GKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRN-SFRKLSLRRSMLKFESRNR 624
G IS AR+V K G PSAFQIRY G KGV+AVD++ ++L R SM KF+S +R
Sbjct: 61 GGISSQLARKVTIKIGKDFIPSAFQIRYAGCKGVLAVDKSLGEKQLFCRPSMRKFQSSHR 120
Query: 625 MLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQK 684
L V + S +LN ++I LLS LG+ D+VF ++ ++ L LG L++ A +++
Sbjct: 121 RLEVLQTSRPQAVYLNHQVIMLLSNLGISDDVFMSLLEKTLDNLGGTLLDERLA---MRQ 177
Query: 685 LNGVDSKNILVKMLLQ-GYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVP--KGRLLIG 741
L+ + I + L G VEP+ + + + ++L L + R+ +P RL++G
Sbjct: 178 LSSAVKRGISYRDLFDAGVHLTVEPFFRSLNAAVYRDRLMQLLMKARMQLPLESARLMMG 237
Query: 742 CFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVR 801
DETG+L YGQVFV+ + + S D+ F + DK ++KG V+VT+NPCLHPGDVR
Sbjct: 238 VVDETGVLEYGQVFVQYSAASNDPRS-DKEF--ELSDK-RVLKGPVVVTRNPCLHPGDVR 293
Query: 802 VLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCET---E 858
L A+ KL + VDC++FP+ G+RPHP+E +GGDLDGD++F+ W LIP +
Sbjct: 294 RLVAIDTPKL--RHLVDCVVFPKTGQRPHPSEMAGGDLDGDLYFVCWYKPLIPSQEISLY 351
Query: 859 PPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLH 918
PMDY R ++T ++ ++ VDY+ D LG I +H AD+ +S +CL
Sbjct: 352 DPMDYKAPPKREDRTEITSADMTQYIVDYIRMDILGVIDNSHKALADKLKKGVQSEECLF 411
Query: 919 LATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQ 978
LA HS AVD KTG ++ PK +PDFM + DKP Y S +LGKLYR+ S +
Sbjct: 412 LAEAHSYAVDAPKTGQWPDLNGLKLPKSYPDFMMKTDKPTYRSKKLLGKLYRSC-RSFKK 470
Query: 979 IRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGAST 1032
+ ++ E I + D +L V G+ FL A++ + Y ++ +M YG +T
Sbjct: 471 LAEDSAPKE-ITKPCLDPNLLVAGYRRFLDEAKNVYQEYCLRLDHIMGIYGINT 523
>gi|320586448|gb|EFW99118.1| RNA-directed RNA polymerase [Grosmannia clavigera kw1407]
Length = 2177
Score = 346 bits (887), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 241/721 (33%), Positives = 370/721 (51%), Gaps = 69/721 (9%)
Query: 299 NLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSF 358
LS EV +QL + + + D ++ L+ LS + A VL+ + + Y P
Sbjct: 1015 QLSFEVSYQLEVCISRGILQEHSLDVVFLESLAALSPDRACRVLEYVAERDKRIYQP--- 1071
Query: 359 VKTQLHVLGRNCKSIP----LSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVK 414
H + R+ K+ L + +A+VTP I P LE N V++
Sbjct: 1072 -----HNIFRDPKAASYWRKTPPEATLDKDRAVYIRKAIVTPTTIVFSTPALEAGNRVLR 1126
Query: 415 NFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGD 474
++ ++ F+RV F +E + T+ F++ +R L++GI +G
Sbjct: 1127 HYREHHDRFLRVQFTDELHIGRLSGGPDTTRTDECFTRAFRA---------LKNGIRVGG 1177
Query: 475 KHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSK 534
+H++FLAF SQLR N + FA + V+ +DVR WMG F+ I++V+K AAR+GQ S+++
Sbjct: 1178 RHFKFLAFGNSQLRENGAYFFAPTELVTCQDVRDWMGDFSNIKTVAKYAARLGQCLSTTR 1237
Query: 535 Q--TLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIR 592
T VP V+ IPDVE G +CF+DG+GKIS +AR +A +S PSAFQ R
Sbjct: 1238 PVPTFGVPTT-VQHIPDVE----GGGFCFTDGVGKISKWWARVIASHLRVSEVPSAFQFR 1292
Query: 593 YGGYKGVIAV--DRNSFRKLSLRRSMLKFESRNR--MLNVTKWSESMPCFLNREIISLLS 648
GG KGV+ V D S + + +R S KF + ++ +L + + SE+ LN++ I LL+
Sbjct: 1293 MGGCKGVLVVWPDVPSGQVVQVRPSQEKFPTSDKANVLEIVRCSETATATLNQQTILLLT 1352
Query: 649 TLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQ-KLNGVDSKNILVKMLLQGYEPNVE 707
LG+ VF + ++L + ++ + A+D L +++ + + L M+ G+ + E
Sbjct: 1353 CLGIPTSVFLELLNEELTGIDAVMKDARKAVDQLMVRVDQNHTTHALADMVKAGFMDSDE 1412
Query: 708 PYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGIL-NYGQVFVRVTM--TREE 764
P++ +L L LK + RI V + ++GC DET L + R T TR++
Sbjct: 1413 PFVWALLQLWRSWTLKALKEKARITVERSAFVLGCVDETDTLRGHTNEPERPTNEDTRDK 1472
Query: 765 LESKDQ------SFFHRVDDKTSIVKGKV--------------------LVTKNPCLHPG 798
++ K+ F +V D ++ G+V LV +NP LHPG
Sbjct: 1473 IDDKENKIARLPQIFLQVPDLDAVTAGQVRSSIDQDAGHGKYKVIVGLCLVGRNPSLHPG 1532
Query: 799 DVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCE-- 856
D+RV+EAV L D ++FP+ G+R P CSGGDLDGD +F+ WD L+P
Sbjct: 1533 DLRVVEAVDVPALHH--LRDVVVFPRVGDRDIPGMCSGGDLDGDDYFVFWDKRLLPPHRV 1590
Query: 857 -TEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSK 915
M+Y R +D VTL + FFV +M +DTL I+ +H AD+ A +
Sbjct: 1591 WNYEAMNYEASREPDVDR-VTLRHLISFFVQHMKHDTLPRIALSHRGFADQLDGGAMHPR 1649
Query: 916 CLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLY-RATLD 974
CL LA LHS AVD+AKTG PA +P L PK++P +M R K Y S LGK+Y R +D
Sbjct: 1650 CLELAQLHSQAVDYAKTGIPALLPHRLNPKQWPHWMNRIQKHTYRSPTALGKIYDRVKVD 1709
Query: 975 S 975
S
Sbjct: 1710 S 1710
>gi|346325393|gb|EGX94990.1| RNA-directed RNA polymerase (Sad-1) [Cordyceps militaris CM01]
Length = 1102
Score = 345 bits (884), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 256/850 (30%), Positives = 407/850 (47%), Gaps = 67/850 (7%)
Query: 300 LSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSFV 359
L V ++L V + A DA ++ L+ L + A +L + + DP+
Sbjct: 134 LDFAVRYRLEVCVSRGYLREYALDAVFLEKLASLDVAKASRMLDYIADQELQVEDPMQIF 193
Query: 360 KTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKY 419
+ + K IP H + +TP + P +E+SN V++ +
Sbjct: 194 EDAKFLCAPAKKRIP---------HYCSLVLKVNITPTCLKLNLPNVESSNRVMRKYNNL 244
Query: 420 ASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEF 479
F+RV F+ E T R + ++ R+L L GI IGD+ YEF
Sbjct: 245 HDRFLRVQFLSE-----------TESDRIAKDRYNNDDVWKRLLRALHKGIRIGDRTYEF 293
Query: 480 LAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVV 539
LAF SQLR SV F +S +D+R W+G F+ IR+++K AR+GQ FS++++ +
Sbjct: 294 LAFGNSQLREGSVTFFCPTAYLSCDDIRKWLGNFDHIRNIAKFGARIGQCFSTTREVRGI 353
Query: 540 PVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLS--HTPSAFQIRYGGYK 597
V V +I D+E + CFSDG+G IS + V + L PSAFQ R GG K
Sbjct: 354 RVPTVRLIDDIETEGE----CFSDGVGIISGLLGKLVVDEMKLDVVGEPSAFQFRMGGAK 409
Query: 598 GVIAVDRNSFRK---LSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKD 654
GV+AV + K + +R+S +KF + L + K +++ LNR+ I +L LGV
Sbjct: 410 GVLAVWPREYAKHMEVCVRKSQIKFTTEANTLEIVKCAKTTTATLNRQTIIILEHLGVSC 469
Query: 655 EVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMML 714
F + + + + +R AA+D+L K + +++ LL+ +P++ +L
Sbjct: 470 GAFLELLNAHIKQYEEAMTDRTAAIDLLTKFVDENQTTVIIAELLKA--DFQDPFVKNLL 527
Query: 715 LSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFH 774
L +K +CRI+V K ++GC DETG L + T+ ++ Q F
Sbjct: 528 KLWRSWSLKLMKEKCRIHVEKSAFVMGCVDETGTLQGHSKKTEGSNTK-RMDDLPQIFLQ 586
Query: 775 ----RVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPH 830
+ +KT+I+KG L+ +NP LH GD+RV++AV L + D ++FP KG+R
Sbjct: 587 ISNRKYRNKTTIIKGLCLIGRNPSLHAGDIRVVQAVDMQCL--RHLKDVVVFPSKGDRSL 644
Query: 831 PNECSGGDLDGDIFFISWDNDLIP-CETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMI 889
P+ SGGDLDGD +F+ W+ L+P PPM + +D DV + ++ F V YM
Sbjct: 645 PSMLSGGDLDGDDYFVIWEPTLMPKVWNTPPMHSEPVNPQNLDRDVEVNDLRNFVVKYMK 704
Query: 890 NDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLA-LKPKEFP 948
ND LG I+ +HL HAD+ S CL LA LHS AVD+ KTG PAE A +PKE+P
Sbjct: 705 NDFLGLIAYSHLAHADK--KGVNSPMCLQLAELHSQAVDYPKTGIPAEWTRAKYQPKEWP 762
Query: 949 DFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLE--VDGFEAF 1006
FM+ + + Y S LGKLY D + + + S E +D + + +
Sbjct: 763 HFMQPKSR-TYHSRRALGKLY----DRVAHENFDYVPS---CEDEFDSRVSQGIHLTDDI 814
Query: 1007 LGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSA 1066
L +A K Y++ L+ + +TE E+ +G ++ + + D +R D+ +
Sbjct: 815 LAIARDIKTEYDQAARRLLKQFRLATEFELYSGWAMSKPA-VGSDYKRQEDLGQQFGALK 873
Query: 1067 KNLQNEAKEWFGSSCKENEHPQLASAWYHVTYSPSYC-------------KERMALLSFP 1113
+ ++ + G + + L +A Y VT C + M L+ FP
Sbjct: 874 QRFRDMCIQAAGEA-GGGQLEVLVAAMYKVTQDEVKCFLAAAEGGDLTCSSKPMPLIGFP 932
Query: 1114 WIVGDILLNI 1123
WI +L+ I
Sbjct: 933 WIFHWVLVKI 942
>gi|449467491|ref|XP_004151456.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Cucumis sativus]
Length = 401
Score = 340 bits (872), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 177/398 (44%), Positives = 248/398 (62%), Gaps = 31/398 (7%)
Query: 739 LIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPG 798
++GC DET L YGQVFV ++ R + +VKGK++V KNPCLHPG
Sbjct: 1 MMGCLDETQTLEYGQVFVHCSIPG------------RSSEGNFVVKGKIVVAKNPCLHPG 48
Query: 799 DVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETE 858
DVRVL+AV L VDC++FPQKG+RPHPNECSG DLDGD++F+ WD +L +
Sbjct: 49 DVRVLDAVDVKALHH--MVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDTELTCIKQV 106
Query: 859 PPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLH 918
PM Y + +DHDVT+EE+ ++F +YM+ND LGAI+ AH V AD++ KA S +C+
Sbjct: 107 KPMSYKPAPTIQLDHDVTIEEVQEYFANYMVNDGLGAIANAHTVFADKNSKKAMSVECIK 166
Query: 919 LATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQ 978
LA L S+AVDF KTG PA +P L+ E+PDFM++ +KP Y+S GVLGKL+R D
Sbjct: 167 LAKLFSIAVDFPKTGVPANLPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSD 226
Query: 979 IRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILT 1038
+ + I++ ++A YD D+EVDGFE +L A +K Y+ ++ LM+YYG TE E+++
Sbjct: 227 VSAFEIFTREVATKCYDPDMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVS 286
Query: 1039 GNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSCKENEHPQL------ASA 1092
GN+ A D R+ D+ ++I + K+L+ E + WF + ++ + + ASA
Sbjct: 287 GNILKMAKSF--DKRK--DL-EQIAFAMKSLRKEVRFWFNENESKSTYDDIQDEYARASA 341
Query: 1093 WYHVTYSPSY--C----KERMALLSFPWIVGDILLNIK 1124
WY VTY P Y C +R LSFPW V D L+ IK
Sbjct: 342 WYCVTYHPDYWGCYNEGTKRDHFLSFPWCVADKLIQIK 379
>gi|171685025|ref|XP_001907454.1| hypothetical protein [Podospora anserina S mat+]
gi|170942473|emb|CAP68125.1| unnamed protein product [Podospora anserina S mat+]
Length = 1493
Score = 339 bits (869), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 240/734 (32%), Positives = 376/734 (51%), Gaps = 66/734 (8%)
Query: 327 IQILSGLSMETALMVLQKLHKLKSICYDPVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNV 386
+QI G + A +VL+ + +DPVS + T + L ++ L + L+
Sbjct: 475 LQIPKGQDPQRARLVLEYAADMGRKIWDPVSLL-TDVGALTYYPTTLRLPHYCALV---- 529
Query: 387 MSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQ 446
+ +VTP KI P +ET+N V++++ + + FMR+ F +E +L +
Sbjct: 530 ---RKVMVTPTKIIFSTPTVETTNRVIRHYWTFQNYFMRIQFTDE---QLEGRVRGSDAD 583
Query: 447 RGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDE------ 500
R +Y+R+ +L GI +G H++FLAF SQ+R N +MF D
Sbjct: 584 RD-------DDLYTRVYRVLFWGIRMGKWHWKFLAFGNSQVRENGAFMFCQPDSHAGDMV 636
Query: 501 VSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYC 560
S +D+R WMG F I+ V+K AAR+GQ FS+++ + I D+ T+DG +C
Sbjct: 637 PSCDDIRRWMGNFEHIKVVAKYAARLGQCFSTTRVLRGGTFPPIVEIEDIN-TADGK-HC 694
Query: 561 FSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNS-FRKLSLRRSMLKF 619
F+DG+G+IS +R VA+ + PSA+Q R GG KGV+ +++ ++ +R S KF
Sbjct: 695 FTDGVGRISPLLSRLVAEDWQVYPPPSAYQFRMGGCKGVLVGWKHAKGTEVHIRPSQEKF 754
Query: 620 ESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAAL 679
+ L V + S LNR+ I++LS+LGV D VF + ++QL + + + ++A+
Sbjct: 755 SAAYNGLEVVRCSSFSCATLNRQTITILSSLGVPDHVFVDLMREQLSRFDRAMTDGKSAV 814
Query: 680 DVLQKLNGVDSKNI-LVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRL 738
D+L + + + +M+ G+ + EP++ +L L LK + R+ V KG
Sbjct: 815 DMLTSFVDENMTTVSIARMIKSGFMDSNEPFVKTVLQLWRAWSLKTLKEKARLAVEKGAF 874
Query: 739 LIGCFDETGILNYGQVFVRVTMTREELESKDQ--SFFHRVDDKT-----SIVKGKVLVTK 791
++GC DETG L + + T R+ + +DQ F ++ D+ + G ++ +
Sbjct: 875 VLGCVDETGTL---RGHSKATEGRQRIR-RDQLPQIFLQIPDRDDPSGYKAIAGLCIIGR 930
Query: 792 NPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDND 851
NP LHPGD+RV+EAV L + D ++FP +G+R P+ CSGGDLDGD FF+ WD
Sbjct: 931 NPSLHPGDIRVVEAVDVPAL--RHLRDVVVFPLEGDRDVPSMCSGGDLDGDDFFVIWDEK 988
Query: 852 LIPCE-TEPPMDYTGRRSRIMDHDVT-LEEIHKFFVDYMINDTLGAISTAHLVHADRDPD 909
L+P E + PPMD+T + D + +E + FFV +M ND L I+ AHL AD +P
Sbjct: 989 LLPTEWSHPPMDHTPQPPVTSDSKKSIMESLASFFVLFMKNDRLPFIAHAHLATADAEPQ 1048
Query: 910 KARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLY 969
A+S KCL LA + TG PAE L P+ +P FMER+ K Y S LG+LY
Sbjct: 1049 GAKSEKCLKLAEM---------TGVPAEWSKKLNPRSWPHFMERQ-KGSYHSKTALGQLY 1098
Query: 970 RAT----LDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALM 1025
DS +S ++ + Y D EV L A K Y+ M ++
Sbjct: 1099 DMVHTQDFDSTKNYQSPF---DRRILSRYMLDQEV------LKTARKIKTQYDIAMRRIL 1149
Query: 1026 NYYGASTEDEILTG 1039
TE E+ TG
Sbjct: 1150 GMLEIRTEFEVWTG 1163
>gi|452987327|gb|EME87083.1| hypothetical protein MYCFIDRAFT_202751 [Pseudocercospora fijiensis
CIRAD86]
Length = 1276
Score = 337 bits (865), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 243/751 (32%), Positives = 379/751 (50%), Gaps = 76/751 (10%)
Query: 323 DAELIQILSGLSMETALMVLQKLHKLKSICYDPVSFVKTQLHVLGRNCKSIPLSSHKRLI 382
D + ++ L+ + + A+ VL+K+ K Y+P++ + Q V S+ K+
Sbjct: 258 DRDFLKRLAEMDLTRAVKVLEKVADNKERVYEPMTIFRLQNQV------SV---VTKKKP 308
Query: 383 DHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALS 442
D+ +VTP IY ETSN V++ F Y F+RV F +E + S
Sbjct: 309 DY-CTEIGSVVVTPSTIYAATMVRETSNRVIRQFKDYEDRFLRVKFTDERYK---GKIWS 364
Query: 443 TSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVS 502
+ R +++SRI + GI IGD+HYEFLAF SQ R + + FA ++++
Sbjct: 365 SDDNR-------MNEVFSRIKRTMTHGIQIGDRHYEFLAFGNSQFREHGAYFFAPTEKLT 417
Query: 503 AEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFS 562
AE +R WMG F+ IR ++K +R+GQ FS+++ +P V++ V++ +G YCF+
Sbjct: 418 AEMIREWMGRFSHIRVIAKYVSRLGQCFSTTR---AIP-HKVDLGRSVDIERNG--YCFT 471
Query: 563 DGIGKISLSFARQVAQKCGLSHT----PSAFQIRYGGYKGVIAVDR--NSFRKLSLRRSM 616
DG G +S AR +A + ++ PSA Q R G KGV+AVD F + +R S
Sbjct: 472 DGAGTMSPFLARMIALHHNVPNSEENFPSAVQFRLAGCKGVLAVDPALKGF-AIQIRPSQ 530
Query: 617 LKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINRE 676
KF + L + + S+ LN +II +LS LG+ DEVF + L+ + + + +
Sbjct: 531 EKFPAEYHGLEICRISQFSTANLNMQIILVLSALGIDDEVFLGKMRAMLVDIKEAMSDER 590
Query: 677 AALDVLQK-LNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPK 735
AL++LQK ++ + +L M+ G+ +P++ L L LK + RIYV +
Sbjct: 591 KALELLQKNIDYSQTTILLATMIFDGFMETKDPFMITCLRLWRSWCLKYLKEKARIYVEQ 650
Query: 736 GRLLIGCFDETGILNYGQVFVRVTMTREELESKDQ---------------SFFHRVDDKT 780
G + DETG L G V+ + ++ D+ F +V D
Sbjct: 651 GFFGLAVPDETGTLR-GHYDKPVSADSDNADTSDEHDAGSDEIASDEDLPEIFLQVPDPD 709
Query: 781 SIVKGKVLVT-----KNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECS 835
+ K +V+++ +NP LHPGDVR + AV + +L D ++ P G+R N CS
Sbjct: 710 APGKYRVILSICILARNPSLHPGDVRKVRAVDKPELHH--LRDVVVIPTTGDRDLANMCS 767
Query: 836 GGDLDGDIFFISWDNDLIP-CETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLG 894
GGDLDGD F + WD + IP + PPMDYT D V+++++ FFV ++ ND L
Sbjct: 768 GGDLDGDDFMVIWDPNFIPHGASHPPMDYTSPDPVTSDGPVSVDDMTTFFVKHIKNDNLS 827
Query: 895 AISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMERE 954
+I+ AH AD+ D + +KC+ LA LHS AVD+ KTG PA M LK +++P + E +
Sbjct: 828 SIAVAHRYWADQLADGVKDAKCIELAQLHSKAVDYPKTGVPAVMTPGLKVQKWPHWSEPK 887
Query: 955 DKPR---YISFGVLGKLYRATLDSIMQIRSNAIW----SEKIAEASYDHDLEVDGFEAFL 1007
+K + Y S VLGKLY D + + +A W ++I A D L
Sbjct: 888 NKSKSKIYHSNRVLGKLY----DEVKKEPFHAAWDLPFDQRILTACEPSD-------RML 936
Query: 1008 GVAESHKEMYEEEMNALMNYYGASTEDEILT 1038
A K Y+E + +M +G TE EI T
Sbjct: 937 ADAREVKAEYDEAIQRIMTQHGIKTEFEIWT 967
>gi|301106324|ref|XP_002902245.1| RNA-dependent RNA Polymerase1 (RDR1) [Phytophthora infestans T30-4]
gi|262098865|gb|EEY56917.1| RNA-dependent RNA Polymerase1 (RDR1) [Phytophthora infestans T30-4]
Length = 2680
Score = 336 bits (862), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 268/843 (31%), Positives = 407/843 (48%), Gaps = 101/843 (11%)
Query: 325 ELIQILSGLSMETALMVLQKLHKLKSICYDPVSFVKTQLHVLGRNCKSIPLSSHKRLIDH 384
EL+ L E AL+ + SI SF+K + L C S L+ +
Sbjct: 1045 ELLTELDEDVQEKALLAFRAHPSDVSITDQFSSFLKEERSTLEGLCTSPSLNPESIV--- 1101
Query: 385 NVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTS 444
Y+ +VTP +I P+ SN V +++ + +FM V F +++ +L +++
Sbjct: 1102 -----YKVIVTPSRIVYCPPDPAPSNRVFRHWG--SENFMYVYFRDDNMERLDFRSVT-- 1152
Query: 445 IQRGIFSKPYRTKIYSRILTILQDGIVI----GDKHYEFLAFSASQLRNNSVWMFASNDE 500
I RI +L++GI I G + FL S SQ+RN+S +F D
Sbjct: 1153 -------------ILERIRNVLKNGIEIPHVSGGLKFRFLGCSLSQVRNSSA-IFTRLDH 1198
Query: 501 VSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVV-------PVQDVEMIPDVEVT 553
+ VR W+G + + S +K R+GQ FSS+K T V PV D+E
Sbjct: 1199 HA---VRLWIGDLSLLTSPAKYLKRLGQAFSSTKDTFEVSRSVLDNPVDDIE-------- 1247
Query: 554 SDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAV------DRNSF 607
+ Y F+DG G+I L A + ++ LS+TPSAFQ+R GG KGV+ V D +
Sbjct: 1248 --NDQYVFTDGCGEIGLVGAESIVRELQLSYTPSAFQVRLGGAKGVLVVSDLGNPDISRE 1305
Query: 608 RKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLIL 667
+ LR+SM KF S + ML + + +L R+ + +L+ LG+ ++VF MQ++ L
Sbjct: 1306 EAVVLRKSMSKFSSNHTMLEIVACAGKSEAYLTRQSVLILNDLGINEDVFMEMQEEFLSD 1365
Query: 668 LGKMLINREAALDVLQKLNGVDSKNIL--VKMLLQGYEPN--VEPYLSMMLLSHHENQLS 723
L ++ + A L V +++ + +L++ E V+ YLS + + + +L+
Sbjct: 1366 LRSLIASDSGAY---FGLKAVLPPSVIWRIDVLVRKLEVKILVDEYLSSLARTIYHYRLA 1422
Query: 724 DLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIV 783
+ R RI + KGR L+G D TG L YG+VFV+ + T EE + +D
Sbjct: 1423 NTVMRARIPIAKGRTLMGVADFTGTLEYGEVFVQYSDTDEETGNDSYVLLDGID------ 1476
Query: 784 KGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDI 843
V V ++PC HPGD+RVL ++ + + DCI+FP KG RPHP+EC+GGDLDGD+
Sbjct: 1477 ---VAVHRSPCHHPGDIRVLRCRTDVPPQLRQLKDCIVFPSKGPRPHPDECTGGDLDGDM 1533
Query: 844 FFISWDNDLIPCETE--PPMDY-------TGRRSRIMDHDVTLEEIHKFFVDYMINDTLG 894
F + WD LIP T+ PM + T R + F++ + +D LG
Sbjct: 1534 FVVIWDERLIPSRTQVHEPMAFDEDNGGDTSPRGEEYHQSTDDAGLIDFYIHSIQDDILG 1593
Query: 895 AISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMERE 954
S AHL D D + LA + S VD + E+ L PK +PDFM+ +
Sbjct: 1594 IASNAHLALCDSSNDGSLDDNAKILARICSKQVDSLRAEKDLEIVRNLAPKSYPDFMQNK 1653
Query: 955 DKPRYISFGVLGKLYR---ATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAE 1011
+KP Y S +LGK+YR A D+ M + ++ I + DH L V G+ ++ A
Sbjct: 1654 EKPSYPSKKILGKMYRRCKAIFDTTM---TKSVSRMPIRD---DHFL-VAGYTDYVEQAN 1706
Query: 1012 SHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDM-KDRILLSAKNLQ 1070
Y+ + AL+ GA TE E+ TG + S + D R+G+ KD LQ
Sbjct: 1707 LLYRQYKLRLRALLLMSGAQTEAELATGMIVEPQSEYKADYFRFGEQCKDAFY----ALQ 1762
Query: 1071 NEAKEWFGSSCK---ENEHPQLASAWYHVTYSPSYCKERMALLSFPWIVGDILLNIKSVN 1127
+ F S E+ +LASA Y VT+ S R LSFPWIV D+L IK+ N
Sbjct: 1763 AGFRSQFDSDTSTFAAGENLKLASACYFVTHDDSDATTR--CLSFPWIVIDLLTTIKTSN 1820
Query: 1128 SRK 1130
+ K
Sbjct: 1821 ASK 1823
>gi|19114207|ref|NP_593295.1| RNA-directed RNA polymerase Rdp1 [Schizosaccharomyces pombe 972h-]
gi|59800170|sp|O14227.1|RDR1_SCHPO RecName: Full=RNA-dependent RNA polymerase 1; Short=Protein rdp1
gi|2330856|emb|CAB11093.1| RNA-directed RNA polymerase Rdp1 [Schizosaccharomyces pombe]
Length = 1215
Score = 333 bits (855), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 251/781 (32%), Positives = 406/781 (51%), Gaps = 74/781 (9%)
Query: 394 VTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKP 453
VTP + + LE N V++NF +A+ FMRV +E + + I+ G S
Sbjct: 459 VTPTTLRIVEDSLEAGNRVIRNFKDFANRFMRVQITDEYYKQ--------KIRGG--SDG 508
Query: 454 YRT-KIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGC 512
+R K+YSRI +L GI +G++ YEFLAF SQLR + + FAS +++A+ +R WMG
Sbjct: 509 FRNEKLYSRIQQLLTYGIKVGNQIYEFLAFGNSQLREHGAYFFASGSDLNAKQIREWMGD 568
Query: 513 FNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSF 572
F++I SVSK AARMGQ FS++K+ V D+ + D+ N +CF+DG+G SLS
Sbjct: 569 FSEINSVSKYAARMGQCFSTTKEINRFCV-DISLQDDIV----RNNHCFTDGVGMASLSV 623
Query: 573 ARQVAQKCGLSHT--PSAFQIRYGGYKGVIAV---DRNSFRKLSL---RRSMLKFESRNR 624
R+++ + +H PSAFQ R GGYKGV+++ + + + +L RRS KF+S +
Sbjct: 624 IRRLSLEVK-NHDMFPSAFQFRMGGYKGVLSLAPPTKLEYHQGNLVFPRRSQDKFKSFHS 682
Query: 625 MLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQ- 683
L V K S LN ++I+LL LGV+ VF + + QL + + + +++ ++ +L+
Sbjct: 683 TLEVIKISRFSNAHLNMQLITLLEGLGVEKTVFLELTRSQLSKMNESINSKQKSILMLRD 742
Query: 684 KLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCF 743
++ S I+ + G+ + + +L ++E L +K + ++ VPKG L+G
Sbjct: 743 NVDEYHSTLIIADFIQAGFLERDDAFTENLLNLYYEWVLRLIKEKQKVSVPKGAYLLGVA 802
Query: 744 DETG---------ILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPC 794
DETG +L+ ++F+++T T S KT ++ G +V +NP
Sbjct: 803 DETGTLKGHYDDAVLSVPEIFIQITDTSTSFGSYSTGKL-----KTRVIVGLCIVARNPS 857
Query: 795 LHPGDVRVLEAVYEMKLEEKDYV-DCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI 853
LHPGDVRV +AV + +E ++ + I+FP G+R P CSGGDLDGD + + WD L+
Sbjct: 858 LHPGDVRVCKAV---RCDELMHLKNVIVFPTTGDRSIPAMCSGGDLDGDEYTVIWDQRLL 914
Query: 854 P-CETEPPMDYTGRRSRI--MDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHA---DRD 907
P PP+ + + I ++ ++ + +FFV+Y+ D+LG IS A A D +
Sbjct: 915 PKIVNYPPLLESSPKKSIDFLEGKPLIDSVKEFFVNYIKYDSLGLISNAWKAWAHDHDNN 974
Query: 908 PDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGK 967
P+ + CL LA +HS AVDFAK+G +M PK +PDFM++ + S +GK
Sbjct: 975 PEGIFGNVCLELAEMHSKAVDFAKSGVACKMQAKYHPKRYPDFMQKTKTRSFRSETAVGK 1034
Query: 968 LYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEA-FLGVAESHKEMYEEEMNALMN 1026
++R + A ++ I YD +++ F+ +L VAE K+ Y+ ++ ++M
Sbjct: 1035 IFRYAARFQRESGRPATYNP-IMNTVYDPCMKLPRFKTEYLNVAEEVKKHYDNDLRSIMA 1093
Query: 1027 YYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRI-----LLSAKNLQN-------EAK 1074
+ STE E+ T + + L + YG +++ + LL K Q +
Sbjct: 1094 RFDISTEYEVYTAFILFKDD-LAKTVNEYG-LREEVSFQFDLLKKKYTQEYLEKCALSNQ 1151
Query: 1075 EWFGSSCKENEHPQLASAWYHVTYSPSYCK----ERMALLSFPWIVGDILLNIKSVNSRK 1130
F SS E +A Y VTY L+SFP++ L + SRK
Sbjct: 1152 SAFDSSEYEERINSAVAATYDVTYDQRVKSVGNGTTEVLISFPYLFSSRLCQL----SRK 1207
Query: 1131 A 1131
A
Sbjct: 1208 A 1208
>gi|297737619|emb|CBI26820.3| unnamed protein product [Vitis vinifera]
Length = 919
Score = 325 bits (832), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 228/355 (64%), Gaps = 20/355 (5%)
Query: 782 IVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDG 841
I++GK++V KNPCLHPGDVRVL AV L VDC++FPQKG+RPHPNECSG DLDG
Sbjct: 548 ILEGKIVVAKNPCLHPGDVRVLWAVNVPTLHH--MVDCVVFPQKGKRPHPNECSGSDLDG 605
Query: 842 DIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHL 901
DI+F+ WD DLIP + PMDYT ++++DHDV +EE+ ++F +Y++ND+LG I+ AH
Sbjct: 606 DIYFVCWDRDLIPPQQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIVNDSLGIIANAHT 665
Query: 902 VHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYIS 961
V AD++ DKA C LA L S+AVDF KTG PAE+P L+ KE+PDFME+ DKP Y S
Sbjct: 666 VFADKEYDKAYCDPCTELAKLFSIAVDFPKTGVPAEIPRNLRVKEYPDFMEKADKPTYES 725
Query: 962 FGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEM 1021
V+GKL+R D + ++ +A SYD D+EV GFE ++ A +K Y+ ++
Sbjct: 726 QSVIGKLFREVKDIAPHNCNIRSFTRDVARQSYDPDMEVVGFEDYVSDAFYYKSEYDYKL 785
Query: 1022 NALMNYYGASTEDEILTGN-LRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSS 1080
LM+YYG TE EIL+G+ +R S+ +R + + I L+ K+L+ EA+ WF
Sbjct: 786 GNLMDYYGIKTESEILSGSIMRMSKSFDRRKD------AEAIGLAVKSLRKEARTWFNKM 839
Query: 1081 CKENEHP-----QLASAWYHVTYSPSY--C----KERMALLSFPWIVGDILLNIK 1124
E + ASAWYHVTY P Y C +R LSFPW V D L++ K
Sbjct: 840 GSETDSEADDVYAKASAWYHVTYHPDYWGCYNEGMDRDHFLSFPWCVYDKLIHTK 894
Score = 299 bits (766), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 212/629 (33%), Positives = 305/629 (48%), Gaps = 112/629 (17%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKA 64
T+ V P A ++ FLE G+ ++ ALEI RS S +VQFTS +
Sbjct: 4 TIQVYGFPSIVSADEIKEFLEKYTGEGTIEALEIKQPRSG-ASMTHAKVQFTSFELAEFI 62
Query: 65 QNLSLNDKLVFNSQN-LKISETHSDIVPRPVKAQHRVEDGVLHVGVMCKEERLRVLQTFE 123
++L K V+ +N LK E DI+P+P H ++ LH G +ER VL
Sbjct: 63 --ITLCKKKVWYGRNYLKAREMDLDIIPKPRAFLHSMDRITLHFGCQMSDERFCVL---- 116
Query: 124 GVRGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFSLDE 183
W+ + S
Sbjct: 117 ------------------------WK--------------------------AINVSHPR 126
Query: 184 GATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKSIGC 243
G +L +L P+IY+K P Y+ KE D WVR DF+ + IG
Sbjct: 127 GQITKFLLIQLLGAPQIYEK--------DVPVLSYYF-KEAPDDQWVREIDFTPSCFIGQ 177
Query: 244 STSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTTSEIVPLVKCRPGFNLSHE 303
S + E+ G + F +YKE+ ILE G + +VP++ G +L +
Sbjct: 178 SFALCLELPYGSQLPNFRENFAYYKENDGKFILESGSSYSHNLHLVPILGPPQGSSLPFQ 237
Query: 304 VLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALM--VLQKLHKLKSICYDPVSFVKT 361
+LF++N+LV N +S D +++ + + L+KL+ LK CY+PV ++
Sbjct: 238 ILFKINTLVQNGCLSGPTLDTSFFRLVDPERFPISFIEHALEKLYHLKECCYEPVRWLSE 297
Query: 362 QLHVLGRNCKSIPLSSHKRL-IDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYA 420
Q R P++ + +D ++ R +TP
Sbjct: 298 QY----RTYVKKPVAGSPAISLDTGLVYVRRVQITPY----------------------- 330
Query: 421 SDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFL 480
E+ K+ + +S + + + RT +Y RIL+ILQ+GIVIGDK ++FL
Sbjct: 331 ----------ENLEKIHSTVISPRMSK----EGRRTGVYRRILSILQNGIVIGDKKFDFL 376
Query: 481 AFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVP 540
AFS+SQLR+NS WMFAS ++A ++R WMG F++IR+V+K AAR+GQ FSSSK+TL V
Sbjct: 377 AFSSSQLRDNSAWMFASRPGLTAAEIRSWMGDFSQIRNVAKYAARLGQSFSSSKETLKVA 436
Query: 541 VQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGL-SHTPSAFQIRYGGYKGV 599
++E IPD+E+ TY FSDGIGKIS A +VA KCG S TPSAFQIRYGGYKGV
Sbjct: 437 KDEIENIPDIEIHKGRTTYVFSDGIGKISPQLAHRVAIKCGCKSSTPSAFQIRYGGYKGV 496
Query: 600 IAVDRNSFRKLSLRRSMLKFESRNRMLNV 628
+AVD S RKLSLR+SM K+ES N L++
Sbjct: 497 VAVDPTSSRKLSLRKSMFKYESDNTNLDL 525
>gi|348680026|gb|EGZ19842.1| hypothetical protein PHYSODRAFT_558487 [Phytophthora sojae]
Length = 2706
Score = 323 bits (827), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 250/807 (30%), Positives = 394/807 (48%), Gaps = 93/807 (11%)
Query: 357 SFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNF 416
+++K + VL C S L S + Y+ +VTP ++ P+ SN V +++
Sbjct: 1094 AYLKEERSVLESMCSSPSLGSGAVV--------YKVIVTPSRVVFCPPDPAPSNRVFRHW 1145
Query: 417 AKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKH 476
+ +FM + F +++ +L + I RI +L+ GI +
Sbjct: 1146 G--SENFMYMYFRDDNMERLDYTS---------------GNILRRIRNVLKKGIEVPHAR 1188
Query: 477 ----YEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSS 532
+ FL S SQ+RN+S +F D +VR W+G + + S +K R+GQ FSS
Sbjct: 1189 DGCRFNFLGCSLSQVRNSSA-IFTLLDH---HEVRSWIGDLSHLTSPAKYLKRLGQAFSS 1244
Query: 533 SKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIR 592
+K+T V Q V P ++T+D Y F+DG G+I+ A + ++ LS+TPSAFQIR
Sbjct: 1245 TKETFNVS-QSVLDNPVEDITNDD--YVFTDGCGEIAKIGAESIVRELNLSYTPSAFQIR 1301
Query: 593 YGGYKGVIAVDRNSFRKLS------LRRSMLKFESRNRMLNVTKWSESMPCFLNREIISL 646
GG KGV+ V +++ LR SM KF S + ML + + +L R+ + +
Sbjct: 1302 LGGAKGVLVVSDQDNPEVTREESILLRESMSKFASNHTMLEIVACAGKSEAYLTRQSVLI 1361
Query: 647 LSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKL--------NGVDSKNILVKML 698
LS LG+ ++V MQ+Q L L ++ + + A L+ + V ++ + VK+L
Sbjct: 1362 LSDLGINEDVLMEMQEQFLSELRTLIASDDGAYFELKAVLPPKVIWWIDVLTRKLGVKIL 1421
Query: 699 LQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRV 758
+ +LS + + + +L++ R RI + +GR L+G D TG L+YG+VFV+
Sbjct: 1422 -------DDEFLSSLARTIYHYRLANTVMRARIPIAQGRTLMGVADFTGTLDYGEVFVQY 1474
Query: 759 TMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVD 818
++T EE + VD V V ++PC HPGD+RVL ++ + + D
Sbjct: 1475 SVTEEETGADRYVTLDEVD---------VAVHRSPCHHPGDIRVLRCRADVPRQLRQLKD 1525
Query: 819 CIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETE--PPMDY-------TGRRSR 869
CI+FP +G RPHP+EC+GGDLDGD+F + WD LIP T+ PM + T R
Sbjct: 1526 CIVFPCQGPRPHPDECTGGDLDGDMFVVIWDKRLIPSRTQVHEPMAFDEENEGDTSPRGG 1585
Query: 870 IMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDF 929
+ + F+V + +D LG S AHL D + + LA + S VD
Sbjct: 1586 EFYQSTDDDGLIDFYVHSIQDDILGVASNAHLALCDSSHEGSLDESAKALARICSKQVDS 1645
Query: 930 AKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYR---ATLDSIMQIRSNAIWS 986
++ E+ +L PK +PDFM+ ++KP Y S VLGK++R A D+ M + +
Sbjct: 1646 LRSEKDLEIVRSLAPKNYPDFMQNKEKPSYPSKKVLGKMFRRCKAIFDTTM---TKGVTQ 1702
Query: 987 EKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRAS 1046
+ + DH L G+ ++ A+ Y+ + AL+ GA TE E+ TG + S
Sbjct: 1703 MPVRD---DHFLTA-GYTDYVDHAKMLYRQYKLRLRALLLMSGAQTEAELATGMIVEPPS 1758
Query: 1047 YLQRDNRRYGDMKDRILLSAKNLQNEAKEWFG---SSCKENEHPQLASAWYHVTYSPSYC 1103
+ D R+G+ + LQ + F S+ E +LASA Y V Y S
Sbjct: 1759 VYKADYFRFGEQCKDVFY---ELQTAFRAQFNGDTSTLASGEELKLASACYFVAYDDSDA 1815
Query: 1104 KERMALLSFPWIVGDILLNIKSVNSRK 1130
R LSF WIV D+L IK+ N K
Sbjct: 1816 STRS--LSFTWIVIDLLTTIKTNNMGK 1840
>gi|268530338|ref|XP_002630295.1| C. briggsae CBR-RRF-3 protein [Caenorhabditis briggsae]
Length = 1766
Score = 320 bits (821), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 243/867 (28%), Positives = 423/867 (48%), Gaps = 103/867 (11%)
Query: 321 AADAELIQILSGLSMETALMVL---QKLHKLKSICYDPVSFVKTQLHVLGRNCKSIPLSS 377
AA+ L Q+L+ ++ V+ ++K + + Y+ + + G + + + L+
Sbjct: 620 AAEESLEQLLNAFDERRSIDVIFAFSTMYKTRKVQYERL--------LNGESLQDVGLA- 670
Query: 378 HKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAK-YASDFMRVTFVEEDWSKL 436
R + N +S + +V+P ++ + PE+ N VV+ F YA +R F +++ +L
Sbjct: 671 --RPLPKNCVSVAKVIVSPSRVLLMAPEVMMVNRVVRRFGPDYA---LRCVFRDDNLGRL 725
Query: 437 PANALSTSIQRGIFSKPYRTKIYSR-ILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMF 495
S I + + + + + I L++GI + D+HY FL +S SQ+R+ +++
Sbjct: 726 AIRDFS------INNIDHMSNVVTEAIYNTLKNGIQVADRHYSFLGWSNSQMRDQGCYLY 779
Query: 496 ASN-DEVSA------EDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIP 548
A D +S ED+R WMG F + SV K +RMGQ F+ ++ T+ + + P
Sbjct: 780 APRVDPISGKVSGTVEDIRVWMGDFREAVSVPKMMSRMGQCFTQAQPTVKLARHHWLVEP 839
Query: 549 DVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRN--- 605
D+E GN +CFSDG G+IS A Q+ +K L P+ FQ+R+ G+KG++ +D
Sbjct: 840 DME-GGPGNKFCFSDGCGRISYKLAGQITRKLKLKEIPACFQVRFKGFKGILVIDPTIDD 898
Query: 606 --SFRKLSLRRSMLKF-----ESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEV-- 656
+ K+ R+S KF + ++ L V K++ P LNR +++L + K
Sbjct: 899 IINMPKVIFRKSQQKFGEGGGDQQDESLEVVKYAMPSPVCLNRPFVTILDQVSKKQSAKC 958
Query: 657 -------FEAMQQQQLILLGKMLINR-EAALDVLQKLNGVDSKNILVKMLLQGYEPNVEP 708
+++L L ML+N +AA +++ + N N+ K G++ +V+P
Sbjct: 959 HQRITNRVHYYLERELSSLSNMLLNENQAAEELVNRTNLPIDWNLASKR--AGFQLSVDP 1016
Query: 709 YLSMMLLSHHENQLSDLKSRCRIYVPK--GRLLIGCFDETGILNYGQVFVRVTMTREELE 766
+ ML + + + S+ +I++P GR + G DETG+L YGQVF++ + T
Sbjct: 1017 LIRSMLFAIYRYNIIHHISKAKIFLPPSLGRSMYGVVDETGLLQYGQVFIQYSPT----- 1071
Query: 767 SKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKG 826
+ + + GKVL+TKNPC PGDVRV +AV++ L VD ++FP+ G
Sbjct: 1072 ------IRQTSPEPLLKTGKVLITKNPCHVPGDVRVFDAVWQPALAH--LVDVVVFPRHG 1123
Query: 827 ERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVD 886
RPHP+E +G DLDGD + I WD +++ E M + +++ D + T +++ +FF+
Sbjct: 1124 PRPHPDEMAGSDLDGDEYSIIWDQEMLLDYNETAMVFPSSQAQEEDKEPTTDDMVEFFLR 1183
Query: 887 YMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKE 946
YM D++G +S AHLV+AD S C +A ++AVDF K+G PAE + +
Sbjct: 1184 YMQQDSIGRMSNAHLVYADL--HGLFSENCASIAQKCAVAVDFPKSGVPAEPLTGFEQCD 1241
Query: 947 F-PDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEA 1005
PD+M KP Y S + G+L+R + ++ I E YD + D +
Sbjct: 1242 VTPDYMMSGGKPMYYSASLNGQLHRKA-RKVEEVLEEYESKGSIFEGEYDKMICPDDADV 1300
Query: 1006 FLGVAE------SHKEMYEEEMNALMNYYGASTEDEILTGNLRN--RASYLQRDNRRYGD 1057
F G + ++ Y + M L++ YG E +++G+ + R + ++RD+ +
Sbjct: 1301 FFGSEPKLVQTMNIRDEYIDRMQQLLDEYGIEDEASVVSGHAASIKRLAGMERDDYSFYH 1360
Query: 1058 MKDRILLSAKNLQN--EAK--EWFGSS--------------CKENEHPQLASAWYHVTY- 1098
+ L + L + AK E FG C H ++ WY Y
Sbjct: 1361 TDKVVELRYEKLYSVFRAKFFEEFGGEEAHTVNDGKGSRVVCIPAMHEKVRQ-WYFAAYV 1419
Query: 1099 SPSYCKE-RMALLSFPWIVGDILLNIK 1124
P K + S PW+ D+L +++
Sbjct: 1420 QPKKNKTGKYIGQSLPWVAWDVLCDLR 1446
>gi|392861850|gb|EAS37560.2| hypothetical protein CIMG_02715 [Coccidioides immitis RS]
Length = 1195
Score = 320 bits (820), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 242/833 (29%), Positives = 399/833 (47%), Gaps = 138/833 (16%)
Query: 376 SSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSK 435
S+ L+ N + +RA VTP Y GP +ET N V++ + + ++F+RV FV+E
Sbjct: 403 STRLNLVHPNNVKVHRAQVTPSGTYLYGPNIETKNRVLRQYNDHINNFLRVEFVDETGD- 461
Query: 436 LPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMF 495
P + IF + R +L+ GI IG H+ FL FS S LR+ + W
Sbjct: 462 -PVYFDPQASLHNIF--------HERFKGVLKQGIKIGGCHFSFLGFSHSSLRSQTCWFV 512
Query: 496 A-----SNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDV 550
A S + A+ + +G F+ I S +K AAR+GQ FS ++ ++ +P +D + +
Sbjct: 513 APFTTSSGERFDAQSIIQGLGSFSHIYSPAKLAARIGQTFSETQTSIAIP-EDAVFLNEP 571
Query: 551 EVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHT--PSAFQIRYGGYKGVIAVD-RNSF 607
++ +G FSDG+G S ++ + L P+ FQIR+ G KG++++D R
Sbjct: 572 DMKRNGR--VFSDGVGTFSPRLLYKIWSEYALREKVKPTVFQIRFAGAKGMVSLDTRLKG 629
Query: 608 RKLSLRRSMLKFESRNRMLNVTKWS---ESMPCFLNREIISLLSTLGVKDEVFEAMQQ-- 662
+L LR SM+KF +R R N+ ++P +LN +II +L LGV F +Q
Sbjct: 630 EQLRLRESMVKFSAR-RAFNIEVCGSGIRALPFYLNAQIIKILEDLGVPPTGFIKLQSDE 688
Query: 663 -QQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQ-----GYEPNVEPYLSMMLLS 716
++L+ +GK L+ +K + V L++ G+ + +P+L ++
Sbjct: 689 IERLLSVGKSASKTSQFLE-----ESSIAKEVRVPWLIEILHGLGFHHDQDPFLRSVVQL 743
Query: 717 HHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRV 776
++ DLK R RI VP+ L G DETG LN G++F +F +
Sbjct: 744 AIFFKMRDLKYRARIRVPEAVTLYGIMDETGYLNEGEIFC--------------TFLNEE 789
Query: 777 DDKTSIVKGKVLVTKNPCLHPGDVRVLEAV-YEMKLEEKDYVDCIIFPQKGERPHPNECS 835
+ +V+ +V+VT+ P LHPGDV+ +AV + +C+IF Q G R P+ S
Sbjct: 790 GGREILVRDQVIVTRAPALHPGDVQYAKAVDVPENSPLRSLHNCVIFSQHGFRDLPSMLS 849
Query: 836 GGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGA 895
GGDLDGD++ + +D L+P T PP +Y +++D +V ++I FFV +M D LG
Sbjct: 850 GGDLDGDLYNVIYDERLMPPCTYPPANYPKVEEKLLDREVVRDDIIDFFVTFMQQDQLGR 909
Query: 896 ISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMP-LALKPKEFPDFME-- 952
I+T H AD+ P CL LA LHS+AVDF+K+G P ++ + +P+ +PDFM
Sbjct: 910 IATIHQAIADQRPAGTLDQDCLLLAELHSVAVDFSKSGIPVDLTRIPKRPRYYPDFMAPS 969
Query: 953 ----------------------------REDKPRYISFGVLGKLYR--------ATLDSI 976
R + Y S +LG +YR + +
Sbjct: 970 PRIKIADSIEVVEEEQYLAEDEDDDEDERPQRRYYKSNRILGVMYRNINEQEFLNAVRNA 1029
Query: 977 MQIRS------NAIWSEKIAEA---SYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNY 1027
++R NAIW +E +DH +E DG + K++YE+++ +M
Sbjct: 1030 SKLRRDDNTLLNAIWDYVASETEGFQWDHLVE-DGRKV--------KDIYEDKLREIMQQ 1080
Query: 1028 YGAS------TEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFG--- 1078
Y + TE E++ G++ + S R ++ ++++++ E +E
Sbjct: 1081 YSKTPWKSSLTEVEVVMGSILGQNSKQSRRDKE----------ASQSMREEYQELVNFTI 1130
Query: 1079 -------SSCKENEHPQLASAWY--HVTYSPSYCKERMALLSFPWIVGDILLN 1122
S ++ +AS W+ H YS S ++++ALLSFPWI + L
Sbjct: 1131 SMLTDRDSGGDDSLERSIASFWHALHAKYSGSRSQKKVALLSFPWIAAMVCLQ 1183
>gi|170582151|ref|XP_001896001.1| RNA dependent RNA polymerase family protein [Brugia malayi]
gi|158596891|gb|EDP35156.1| RNA dependent RNA polymerase family protein [Brugia malayi]
Length = 1475
Score = 320 bits (820), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 253/888 (28%), Positives = 421/888 (47%), Gaps = 130/888 (14%)
Query: 333 LSMETALMVLQKLHKLKSICYDPVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRA 392
+++E ++ + ++K+I +F + Q + + K + H R D +A
Sbjct: 416 MTLEVLERLINMIDEMKNIPPLISAFERIQNSIFVK--KELLAEIHGRSADEGFQRVRKA 473
Query: 393 LVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSK 452
++TP ++ + PEL N V++ F + D +R+ F ++D + L + I
Sbjct: 474 VITPTRMLLVIPELLMGNRVLREFDESGDDALRIQFRDDDGAHLRRSRAGLYI------- 526
Query: 453 PYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGC 512
T +++ +L G+ I D+H+ +LA S SQ+R+N + F D+ + +R +G
Sbjct: 527 -IETTVHNSLLR----GVYISDRHFVYLASSNSQMRDNGCYFFNDGDDGKVKMIRDKLGK 581
Query: 513 FNKIRSVSKCAARMGQLFSSSKQT-LVVPVQDVEMIPDVEVTSD--GNTYCFSDGIGKIS 569
F+ ++ K +RMGQ F+ SK+T + + + DV D G + FSDG+GK+S
Sbjct: 582 FDHT-NIPKLMSRMGQCFTQSKETDVTLKRRKYNKTHDVIGGKDSCGEPFIFSDGVGKLS 640
Query: 570 LSFARQVAQKCGLSH-TPSAFQIRYGGYKGVIAVD-----------RNSFRK-------- 609
FA Q+A GL+ PS FQ RY G KGV++VD RN
Sbjct: 641 EDFAEQIANDLGLAKCVPSCFQFRYRGLKGVLSVDPALRQRRLWAERNGLEDKHAKTAKV 700
Query: 610 ----LSLRRSMLKFES-RNRMLNVTKWSESMPCFLNREIISLLSTLG------VKDEV-- 656
+ R S KF + R ++ + K+S +LNR +I++L + V +
Sbjct: 701 NDLDIIFRPSQDKFHAPRKEIIEIVKYSSPTSVYLNRPLINILDQVSDMQGFDVHSRIVN 760
Query: 657 -FEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKML--LQGYEPNVEPYLSMM 713
+ +QL+ L L++ + + L + + I V+ L +G+ EP+ +
Sbjct: 761 RIHGLLDRQLLKLSDALMSEDRCRERLAEF----PRRINVQYLSVARGFTLTQEPFFHGL 816
Query: 714 LLSHHENQLSDLKSRCRIYVPK--GRLLIGCFDETGILNYGQVFVRVTMTREELESKDQS 771
L++ L S+ I +P GR + G DETG+L YGQVFV+ T
Sbjct: 817 LIASVRFTLQKQLSKEHIQIPANLGRTMFGILDETGLLQYGQVFVQFT----------ND 866
Query: 772 FFHRVDDKT---SIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGER 828
F + K +IVKG VL+TKNP + GDVR+ EAV +L + VD ++FPQ G R
Sbjct: 867 VFLKTPPKAAAKTIVKGFVLITKNPSIVAGDVRIFEAVDLPEL--RHLVDVVVFPQHGPR 924
Query: 829 PHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTG--RRSRIMDHDVTLEEIHKFFVD 886
PH +E +G DLDGD + + WD+ ++ E PMD++ R I+ D + E+ +F+V+
Sbjct: 925 PHTDEMAGSDLDGDEYSVIWDDQMLFSHNEEPMDFSKLIRPPDILKEDEVVREMRRFYVE 984
Query: 887 YMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAP----------- 935
Y++ D++G I+ A LV++ D S C+ +A HS +VDF KTG P
Sbjct: 985 YVMQDSIGIIANAFLVNS--DTFGIASDVCMSIAEKHSQSVDFPKTGQPPKPLVKEWSNG 1042
Query: 936 --AEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRAT--LDSIMQIRSNAIWSEKIAE 991
+M +P+ +PDFM + +P Y+S ++G+L+R +D ++ I E ++
Sbjct: 1043 PDGKMIPPERPERWPDFMCKTHEPSYVSTRLVGQLFRRIRLIDDVLTITRA---HETQSK 1099
Query: 992 ASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTG---NLRNRASYL 1048
+ D LE G+E++ A + Y + ALM+ YG E ++ +G +RNR S
Sbjct: 1100 VTVDPLLEYSGWESYENDATLNLIAYSAHIRALMDNYGIEDECQLYSGCFCKVRNRIS-- 1157
Query: 1049 QRDNRRYGDMKDRILLSAK----------NLQNEAKEWFGSSCKEN-------------- 1084
RD ++ K N E ++ + +++
Sbjct: 1158 DRDGDDMSQFNTSFIIERKLTNIFMCFRCNFFAEFGDFMSCTQQDDDLRNKDVIERRYCK 1217
Query: 1085 ----EHPQLASAWYHVTYSPSYCKERMALLSFPWIVGDILLNIKSVNS 1128
E + ASA+Y V Y ++ LLSFPWIV DIL +IK N+
Sbjct: 1218 YPTVEMKKKASAYYIVCYRKVMKEKGERLLSFPWIVWDILADIKKENA 1265
>gi|320034943|gb|EFW16885.1| conserved hypothetical protein [Coccidioides posadasii str. Silveira]
Length = 1195
Score = 318 bits (815), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 242/833 (29%), Positives = 399/833 (47%), Gaps = 138/833 (16%)
Query: 376 SSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSK 435
S+ L+ N + +RA VTP Y GP +ET N V++ + + ++F+RV FV+E
Sbjct: 403 STRLNLVHPNNVKVHRAQVTPSGTYLYGPNIETKNRVLRQYNDHINNFLRVEFVDETGD- 461
Query: 436 LPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMF 495
P + IF + R +L+ GI IG H+ FL FS S LR+ + W
Sbjct: 462 -PVYFDPQASLHNIF--------HERFKGVLKQGIKIGGCHFSFLGFSHSSLRSQTCWFV 512
Query: 496 A-----SNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDV 550
A S + A+ + +G F+ I S +K AAR+GQ FS ++ ++ +P +D + +
Sbjct: 513 APFTTSSGERFDAQSIIQGLGSFSHIYSPAKLAARIGQTFSETQTSIAIP-EDAVFLNEP 571
Query: 551 EVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHT--PSAFQIRYGGYKGVIAVD-RNSF 607
++ +G FSDG+G S ++ + L P+ FQIR+ G KG++++D R
Sbjct: 572 DMKRNGR--VFSDGVGTFSPRLLYKIWSEYALREKVKPTVFQIRFAGAKGMVSLDTRLKG 629
Query: 608 RKLSLRRSMLKFESRNRMLNVTKWS---ESMPCFLNREIISLLSTLGVKDEVFEAMQQ-- 662
+L LR SM+KF +R R N+ ++P +LN +II +L LGV F +Q
Sbjct: 630 EQLRLRESMVKFSAR-RAFNIEVCGSGIRALPFYLNAQIIKILEDLGVPPTGFIKLQSDE 688
Query: 663 -QQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQ-----GYEPNVEPYLSMMLLS 716
++L+ +GK L+ +K + V L++ G+ + +P+L ++
Sbjct: 689 IERLLSVGKSASKTSQFLE-----ESSIAKEVRVPWLIEILHGLGFHHDQDPFLRSVVQL 743
Query: 717 HHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRV 776
++ DLK R RI VP+ L G DETG LN G++F +F +
Sbjct: 744 AIFFKMRDLKYRARIRVPEAVTLYGIMDETGYLNEGEIFC--------------TFLNEE 789
Query: 777 DDKTSIVKGKVLVTKNPCLHPGDVRVLEAV-YEMKLEEKDYVDCIIFPQKGERPHPNECS 835
+ +V+ +V+VT+ P LHPGDV+ +AV + +C+IF Q G R P+ S
Sbjct: 790 GGREILVRDQVIVTRAPALHPGDVQYAKAVDVPENSPLRSLHNCVIFSQHGFRDLPSMLS 849
Query: 836 GGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGA 895
GGDLDGD++ + +D L+P T PP +Y +++D +V ++I FFV +M D LG
Sbjct: 850 GGDLDGDLYNVIYDERLMPPCTYPPANYPKVEEKLLDREVLRDDIIDFFVTFMQQDQLGR 909
Query: 896 ISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMP-LALKPKEFPDFME-- 952
I+T H AD+ P CL LA LHS+AVDF+K+G P ++ + +P+ +PDFM
Sbjct: 910 IATIHQAIADQRPAGTLDRDCLLLAELHSVAVDFSKSGIPVDLTRIPKRPRYYPDFMAPS 969
Query: 953 ----------------------------REDKPRYISFGVLGKLYR--------ATLDSI 976
R + Y S +LG +YR + +
Sbjct: 970 PRIKIADSIEVVEEEQYLAEDEDDDEDERPQRRYYKSNRILGVMYRNINEQEFLNAVRNA 1029
Query: 977 MQIRS------NAIWSEKIAEA---SYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNY 1027
++R NAIW +E +DH +E DG + K++YE+++ +M
Sbjct: 1030 SKLRRDDNTLLNAIWDYVASETEGFQWDHLVE-DGRKV--------KDIYEDKLREIMQQ 1080
Query: 1028 YGAS------TEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFG--- 1078
Y + TE E++ G++ + S R ++ ++++++ E +E
Sbjct: 1081 YSKTPWKSSLTEVEVVMGSILGQNSKQSRRDKE----------ASQSMREEYQELVNFTI 1130
Query: 1079 -------SSCKENEHPQLASAWY--HVTYSPSYCKERMALLSFPWIVGDILLN 1122
S ++ +AS W+ H YS S ++++ALLSFPWI + L
Sbjct: 1131 SMLTDRDSGGDDSLERSIASFWHALHGKYSGSRSQKKVALLSFPWIAAMVCLQ 1183
>gi|316989903|gb|ADU77017.1| RNA-dependent RNA polymerase 1c [Cucumis sativus]
Length = 400
Score = 317 bits (813), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 175/397 (44%), Positives = 247/397 (62%), Gaps = 31/397 (7%)
Query: 740 IGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGD 799
+GC DET L YGQVFV ++ R + +VKGKV+V KNPCLHPGD
Sbjct: 1 MGCLDETQTLEYGQVFVHCSIPG------------RSSEGNFVVKGKVVVAKNPCLHPGD 48
Query: 800 VRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEP 859
VR+L+A+ L VDC++FPQKG+RPHPNECSG DLDGD++F+ WD +L +
Sbjct: 49 VRLLDAIDVKALHH--MVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDTELTCIKQVK 106
Query: 860 PMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHL 919
PM Y + +DHDVT+EE+ ++F +YM+ND LGAI+ AH V AD++ KA S++C+ L
Sbjct: 107 PMSYKPAPTIQLDHDVTIEEVQEYFANYMVNDGLGAIANAHTVFADKNSKKAMSAECIKL 166
Query: 920 ATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQI 979
A L S+AVDF KTG PA +P L+ E+PDFM++ +K Y+S GVLGKL+R D +
Sbjct: 167 AKLFSIAVDFPKTGVPANLPRNLRVHEYPDFMDKPNKATYVSNGVLGKLFRGVKDVSSDV 226
Query: 980 RSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTG 1039
+ I++ ++A YD D+EVDGFE +L A +K Y+ ++ LM+YYG TE E+++G
Sbjct: 227 SAFEIFTREVATKCYDPDMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSG 286
Query: 1040 NLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSCKENEHPQL------ASAW 1093
N+ A D R+ D+ ++I + K+L+ E + WF + ++ + + ASAW
Sbjct: 287 NILKMAKSF--DKRK--DL-EQIAFAMKSLRKEVRFWFNENESKSTYDDIQDEYARASAW 341
Query: 1094 YHVTYSPSY--C----KERMALLSFPWIVGDILLNIK 1124
Y VTY P Y C +R LSFPW V D L+ IK
Sbjct: 342 YCVTYHPDYWGCYNEGTKRDHFLSFPWCVADKLIQIK 378
>gi|303322200|ref|XP_003071093.1| RNA-directed RNA polymerase, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240110792|gb|EER28948.1| RNA-directed RNA polymerase, putative [Coccidioides posadasii C735
delta SOWgp]
Length = 1195
Score = 317 bits (813), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 242/833 (29%), Positives = 398/833 (47%), Gaps = 138/833 (16%)
Query: 376 SSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSK 435
S+ L+ N + +RA VTP Y GP +ET N V++ + + ++F+RV FV+E
Sbjct: 403 STRLNLVHPNNVKVHRAQVTPSGTYLYGPNIETKNRVLRQYNDHINNFLRVEFVDETGD- 461
Query: 436 LPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMF 495
P + IF + R +L+ GI IG H+ FL FS S LR+ + W
Sbjct: 462 -PVYFDPQASLHNIF--------HERFKGVLKQGIKIGGCHFSFLGFSHSSLRSQTCWFV 512
Query: 496 A-----SNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDV 550
A S + A+ + +G F+ I S +K AAR+GQ FS ++ ++ +P +D + +
Sbjct: 513 APFTTSSGERFDAQSIIQGLGSFSHIYSPAKLAARIGQTFSETQTSIAIP-EDAVFLNEP 571
Query: 551 EVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHT--PSAFQIRYGGYKGVIAVD-RNSF 607
+V +G FSDG+G S ++ + L P+ FQIR+ G KG++++D R
Sbjct: 572 DVKRNGR--VFSDGVGTFSPRLLYKIWSEYALREKVKPTVFQIRFAGAKGMVSLDTRLKG 629
Query: 608 RKLSLRRSMLKFESRNRMLNVTKWS---ESMPCFLNREIISLLSTLGVKDEVFEAMQQ-- 662
+L LR SM+KF +R R N+ ++P +LN +II +L LGV F +Q
Sbjct: 630 EQLRLRESMVKFSAR-RAFNIEVCGSGIRALPFYLNAQIIKILEDLGVPPTGFIKLQSDE 688
Query: 663 -QQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQ-----GYEPNVEPYLSMMLLS 716
++L+ +GK L+ +K + V L++ G+ + +P+L ++
Sbjct: 689 IERLLSVGKSASKTSQFLE-----ESSIAKEVRVPWLIEILHGLGFHHDQDPFLRSVVQL 743
Query: 717 HHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRV 776
++ DLK R RI VP+ L G DETG LN G++F +F +
Sbjct: 744 AIFFKMRDLKYRARIRVPEAVTLYGIMDETGYLNEGEIFC--------------TFLNEE 789
Query: 777 DDKTSIVKGKVLVTKNPCLHPGDVRVLEAV-YEMKLEEKDYVDCIIFPQKGERPHPNECS 835
+ +V+ +V+VT+ P LHPGDV+ +AV + +C+IF Q G R P+ S
Sbjct: 790 GGREILVRDQVIVTRAPALHPGDVQYAKAVDVPENSPLRSLHNCVIFSQHGFRDLPSMLS 849
Query: 836 GGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGA 895
GGDLDGD++ + +D L+P T PP +Y +++D +V ++I FFV +M D LG
Sbjct: 850 GGDLDGDLYNVIYDERLMPPCTYPPANYPKVEEKLLDREVVRDDIIDFFVTFMQQDQLGR 909
Query: 896 ISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMP-LALKPKEFPDFME-- 952
I+T H AD+ P CL LA LHS+AVDF+K+G P ++ + +P+ +PDFM
Sbjct: 910 IATIHQAIADQRPAGTLDRDCLLLAELHSVAVDFSKSGIPVDLTRIPKRPRYYPDFMAPS 969
Query: 953 ----------------------------REDKPRYISFGVLGKLYR--------ATLDSI 976
R + Y S +LG +YR + +
Sbjct: 970 PRIKIADSIEVVEEEQYLAEDEDDDEDERPQRRYYKSNRILGVMYRNINEQEFLNAVRNA 1029
Query: 977 MQIRS------NAIWSEKIAEA---SYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNY 1027
++R NAIW +E +DH +E DG + K++YE+++ +M
Sbjct: 1030 SKLRRDDNTLLNAIWDYVASETEGFQWDHLVE-DGRKV--------KDIYEDKLREIMQQ 1080
Query: 1028 YGAS------TEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFG--- 1078
Y + TE E++ G++ + S R ++ ++++++ E +E
Sbjct: 1081 YSKTPWKSSLTEVEVVMGSILGQNSKQSRRDKE----------ASQSMREEYQELVNFTI 1130
Query: 1079 -------SSCKENEHPQLASAWY--HVTYSPSYCKERMALLSFPWIVGDILLN 1122
S ++ +A W+ H YS S ++++ALLSFPWI + L
Sbjct: 1131 SMLTDRDSGGDDSLERSIACFWHALHGKYSGSRSQKKVALLSFPWIAAMVCLQ 1183
>gi|213407476|ref|XP_002174509.1| RNA-directed RNA polymerase Rdp1 [Schizosaccharomyces japonicus
yFS275]
gi|212002556|gb|EEB08216.1| RNA-directed RNA polymerase Rdp1 [Schizosaccharomyces japonicus
yFS275]
Length = 1213
Score = 315 bits (808), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 244/772 (31%), Positives = 389/772 (50%), Gaps = 72/772 (9%)
Query: 300 LSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDP-VSF 358
LS++ L+ L + V +S LI IL ++ E A L+ K P +
Sbjct: 374 LSNQTLYWLEACVSQFLISEFDLPT-LIPILESVTEEQARSFLESTFARKVFVSKPSLEL 432
Query: 359 VKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAK 418
V+ Q G+ S + S + +TP + + LE N V+++F++
Sbjct: 433 VQNQSSASGKKFTS------------GLNSVKKVCITPTTVKVMDNSLEAGNRVIRHFSQ 480
Query: 419 YASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTK---IYSRILTILQDGIVIGDK 475
Y F+R+ EE+ +R I S P K +Y+R+ ++ GI+IG
Sbjct: 481 YNDRFLRIQITEEN------------TKRKIRSNPDALKQESVYARVYQLMSHGIIIGKT 528
Query: 476 HYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQ 535
H+EFLAF SQLR + + FAS ++ SA+ +R WMG F+ SV+K AARMGQ FS++K
Sbjct: 529 HFEFLAFGNSQLREHGAYFFASGEDESADSIRNWMGDFSNNESVAKYAARMGQCFSTTKD 588
Query: 536 TLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHT-PSAFQIRYG 594
V+ VE D+ + +D CF+DG+G SLS ++ A + PSA Q R G
Sbjct: 589 LKRFQVK-VEKRNDI-IRNDS---CFTDGVGMASLSVMKRTASEMDNEEMFPSAVQFRMG 643
Query: 595 GYKGVIAVDRNS---FRKLSL---RRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLS 648
GYKGV+++ + + K +L R S KF+S +L V K S LN ++I+LL
Sbjct: 644 GYKGVLSLAPPTLLEYHKGNLVFTRDSQEKFKSNFTVLEVIKVSRFSHAHLNMQLITLLE 703
Query: 649 TLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVD---SKNILVKMLLQGYEPN 705
LGV +F + + +L L L + A+ +L+ N VD S IL ++ G+
Sbjct: 704 GLGVPTSLFVDLAKNELKELTISLKDPRRAVTLLR--NHVDEYRSTLILADLIACGFMQR 761
Query: 706 VEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETG---------ILNYGQVFV 756
+ + ++ + E + +K + R+ V +G L+G DETG +L +VF+
Sbjct: 762 NDSFTKNLINLYFEWVVRTIKEKQRLRVKEGAFLMGVADETGTLKGHYNDSVLPIPEVFI 821
Query: 757 RVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDY 816
++T + ++ D + ++ KT+I+ G +V +NP LHPGDVRV AV +L
Sbjct: 822 QIT---DPSKNADATVTGKI--KTTIIMGLCVVVRNPALHPGDVRVCRAVRCNELLHLKN 876
Query: 817 VDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIP--CETEPPMDYTGRRSRIMDHD 874
V I+FP G+ C+GGDLDGD + + WD + +P P +D +R
Sbjct: 877 V--IVFPTTGDLSVTEMCAGGDLDGDEYTVIWDPNFLPKIVNYPPYIDNAAKRILTFKEG 934
Query: 875 V-TLEEIHKFFVDYMINDTLGAISTAHLVHA-DR--DPDKARSSKCLHLATLHSMAVDFA 930
V +E I FFV Y+ ++LG IS + A DR +PD S CL L+ LHS AVD+
Sbjct: 935 VPPIESIKAFFVRYIKYESLGLISNSWKAWAHDRVNNPDGIFGSICLKLSALHSTAVDYP 994
Query: 931 KTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIA 990
K+G A MP +PK +PDFME+E + + + +G++YR Q A +S K+
Sbjct: 995 KSGVAAIMPQEYRPKAYPDFMEKEFR-SFPAMTAVGEIYRYASAFQSQYFKKA-YSSKL- 1051
Query: 991 EASYDHDLEVDGF-EAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNL 1041
YD +++ + + ++ +A+ KE Y+ ++ ++M ++ TE EI T L
Sbjct: 1052 NNDYDETMKLPPYKQQYIEIAKKSKEQYDNDLRSVMTHFDIKTEYEIFTSFL 1103
>gi|324500457|gb|ADY40216.1| RNA-dependent RNA polymerase RRF-3 [Ascaris suum]
gi|333440982|gb|AEF32766.1| RdRP3 [Ascaris suum]
Length = 1640
Score = 311 bits (797), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 241/803 (30%), Positives = 401/803 (49%), Gaps = 96/803 (11%)
Query: 385 NVMSCYRALVTPMKIYCLGPELETSNYVVKNFAK-YASDFMRVTFVEEDWSKLPANALST 443
N + + + TP+++ + PE+ +N VV++F + YA +R F +++ +L N +
Sbjct: 561 NCVLIRKVMATPLRLILMPPEVMMTNRVVRHFGEEYA---LRCVFRDDNGQRLVVNDFT- 616
Query: 444 SIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASN---DE 500
RG + I + L +GI I +HY+FLA+S SQ+R++ +M+++ D+
Sbjct: 617 ---RGRAVQEQSLIIQRLVYKTLSEGIHIASRHYKFLAWSNSQMRDHGCYMYSATKVIDD 673
Query: 501 VSA-------EDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDV--- 550
VS ED+R WMG F ++V K +RMGQ F+ ++ T+V+ +D M D+
Sbjct: 674 VSGKERIYEIEDIRRWMGDFTASKNVPKLMSRMGQCFTQAQPTIVLERKDWRMEEDIVGG 733
Query: 551 -EVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRN---- 605
G + FSDG G+IS +A VA K L PS FQ+R+ G+KGV+ VD +
Sbjct: 734 LPHPETGELFNFSDGAGRISAKYASLVAAKLDLRPPPSCFQVRFKGFKGVLCVDPSLDLE 793
Query: 606 SFRKLSLRRSMLKFE---SRNRMLNVTKWSESMPCF--LNREIISLLSTLGVKDEV---- 656
+ + RRS KFE S L V K SMP F L+R +I +L + +
Sbjct: 794 NKENVVFRRSQKKFEEDESEAAELEVVK--HSMPSFVCLSRPLIMILDQVSERQNRELHQ 851
Query: 657 -----FEAMQQQQLILLGKMLINREAALDVLQ-KLN-GVDSKNILVKMLLQGYEPNVEPY 709
+ +++L L +ML++ E A + L +L+ +D + ++ G+ EP+
Sbjct: 852 RLCWRIHCLLEKELNTLAEMLLDEEVAAEALSSRLSLSIDFR----QLHDSGFTFTNEPF 907
Query: 710 LSMMLLSHHENQLSDLKSRCRIYVPK--GRLLIGCFDETGILNYGQVFVRVTMTREELES 767
+L++ H + S+ +I++P GR + G D+TG+L YGQVFV+ + +
Sbjct: 908 FRSLLVAVHHYNIKQHLSKLKIFLPGSMGRTMYGVIDDTGVLQYGQVFVQYSPSV----- 962
Query: 768 KDQSFFHRVDDKTSIVK-GKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKG 826
R K I G VLVTKNPCL GDVR+ AVY+ L D I+FP+ G
Sbjct: 963 -------RTPSKKVITHVGPVLVTKNPCLVGGDVRMFTAVYQSSLSH--LRDVIVFPRYG 1013
Query: 827 ERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVD 886
RPH +E +G DLDGD + + +D DL E M + + D T E++ FF+
Sbjct: 1014 PRPHTDEMAGSDLDGDEYIVIFDKDLFLDHNEEAMHFPKPVASDYDTPPTAEDMIDFFLK 1073
Query: 887 YMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKE 946
Y+ D++G +S AHL+ +DR C +A S+AVDF K+G PAE + + +
Sbjct: 1074 YLSQDSIGRMSNAHLIMSDR--LGLFHEICDGIARKCSIAVDFPKSGEPAEPLSSFEQSD 1131
Query: 947 F-PDFMEREDKPRYISFGVLGKLYRAT--LDSIMQIRSNAIWSEKIAEASYDHDLEVDGF 1003
PDFM++ +P Y S ++G+LYR +++I+++ +++ YD L D
Sbjct: 1132 IVPDFMQKSFRPSYRSHRLVGRLYRKVKKVENIVELAQMIPFTDTFDPQLYDESL-FDTH 1190
Query: 1004 EAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGN--LRNRASYLQRDNRRYGDMKDR 1061
+ + + Y ++ LM+ YG + E +++G+ R + +++D+ Y DR
Sbjct: 1191 PCLVRNSIHLRNQYNAKVQQLMDEYGITDEASVVSGHSVTIRRITDMEKDDYSYYH-SDR 1249
Query: 1062 I--LLSAKNLQNEAKEWFGSSCKENEHPQL-----------------ASAWYHVTYSP-S 1101
I + ++ ++ +E+F +E++ + A WY V Y +
Sbjct: 1250 IVEMRYSRIYESFRREFFMEFGEESDFITVDAFGQRGIRWNSALITKAKVWYAVCYGKRA 1309
Query: 1102 YCKERMALLSFPWIVGDILLNIK 1124
C + SFPWIV D+LL +K
Sbjct: 1310 MCPSKFR--SFPWIVWDLLLIVK 1330
>gi|302420105|ref|XP_003007883.1| RNA-dependent RNA polymerase [Verticillium albo-atrum VaMs.102]
gi|261353534|gb|EEY15962.1| RNA-dependent RNA polymerase [Verticillium albo-atrum VaMs.102]
Length = 1465
Score = 310 bits (793), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 229/736 (31%), Positives = 357/736 (48%), Gaps = 83/736 (11%)
Query: 381 LIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANA 440
++ H + +VTP IY P +E SN V++ + + F+RV F +E
Sbjct: 482 VVPHYCAIVRKVVVTPTTIYLSSPGVEASNRVIRKYQHVSDRFLRVQFTDE--------- 532
Query: 441 LSTSIQRGIFSKPYRTK----IYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFA 496
+ RG S + + ++ R+ + +GI IGD+HY+FLAF SQ+R + F
Sbjct: 533 ----LTRGRISTRAKMELDHYVFKRVYLTMINGIRIGDRHYKFLAFGNSQIRECGAYFFC 588
Query: 497 SNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDG 556
+ ++R WMG FN I V+K AAR+GQ FS++++ + ++++IPD+E
Sbjct: 589 ETVHLKCTEMRQWMGNFNHIHIVAKFAARLGQCFSTTREIRSIRAPNIQIIPDIER---- 644
Query: 557 NTYCFSDGIGKISLSFARQVAQKCGLS--HTPSAFQIRYGGYKGVIAV-DRNSFRKLSLR 613
N +CF+DG+GKIS A V ++ GL TPSAFQ R GG KGV+AV + +R
Sbjct: 645 NGHCFTDGVGKISSFLASMVLEEMGLETVETPSAFQFRMGGCKGVLAVWPEAKGMYVHIR 704
Query: 614 RSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLI 673
+S KF++ L + + + LNR+ I++L++LG+K EVF + Q+QL K +
Sbjct: 705 KSQEKFKATFNGLEIIRCARFSAATLNRQTITILTSLGIKSEVFMDLLQRQLHSYEKAMN 764
Query: 674 NREAALDVLQKLNGVDSKNILVKMLLQ-GYEPN--VEPYLSMMLLSHHENQLSDLKSRCR 730
++ AA +L + + ++ ++ L+ G+ + EP++ +L + L+ + R
Sbjct: 765 DQGAAAVLLGRHIDENHTSLALRDLINWGFMRHDVQEPFVLTILQLWRVWSMKLLRDKAR 824
Query: 731 IYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFH--RVDDKT--SIVKGK 786
I V KG ++GC DET L T +E Q F DD+ +++KG
Sbjct: 825 IVVDKGAFVLGCVDETATLRGHNRASEGQTTSRNVELLPQIFLQIPDPDDRHFFNVIKGV 884
Query: 787 VLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFI 846
+V +NP LHPGD+RV+EAV +L V ++FP G+ P+ SGGDLDGD FF+
Sbjct: 885 CIVGRNPSLHPGDIRVVEAVDVPQLRHMKNV--VVFPSTGDVDVPSMLSGGDLDGDDFFV 942
Query: 847 SWDNDLI-PCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHAD 905
WD DLI P PMD +++++D DV +++
Sbjct: 943 IWDPDLIPPVWNFRPMDNAAPQTKVLDRDVNTKDL------------------------- 977
Query: 906 RDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFM--EREDKPRYISFG 963
L LA LHS AVD+ K+G PAE+ L+ + +P FM R Y S+
Sbjct: 978 ----------SLQLAKLHSKAVDYVKSGDPAELGRELRARRWPHFMGGRRNKNSIYHSYT 1027
Query: 964 VLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNA 1023
LG++Y D I + N ++ +K +D A L A K Y+ M
Sbjct: 1028 ALGQIY----DRIQDVPFNPLYEKKFDRRILTRFAPID--NAVLKQARRLKSTYDTAMRR 1081
Query: 1024 LMNYYGASTEDEILTGNL--RNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSC 1081
LM STE EI TG R R + + G +D LL ++ ++E G S
Sbjct: 1082 LMAQREVSTEFEIWTGFPLSRPRVGNAYKHSEDIG--RDAGLLK-QSFRDEVHALVGGSG 1138
Query: 1082 KENEHPQLASAWYHVT 1097
+ P +A Y VT
Sbjct: 1139 YDKVAP-FVAAMYQVT 1153
>gi|392890785|ref|NP_495713.2| Protein RRF-3 [Caenorhabditis elegans]
gi|316979926|emb|CAA88315.2| Protein RRF-3 [Caenorhabditis elegans]
Length = 1765
Score = 309 bits (792), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 235/800 (29%), Positives = 390/800 (48%), Gaps = 89/800 (11%)
Query: 385 NVMSCYRALVTPMKIYCLGPELETSNYVVKNFA-KYASDFMRVTFVEEDWSKLPANALST 443
N +S + +VTP +I + PE+ N VV+ F YA +R F +++ +L S
Sbjct: 675 NCVSVAKVIVTPSRILLMAPEVMMVNRVVRRFGPDYA---LRCVFRDDNLGRLAIRDFS- 730
Query: 444 SIQRGIFSKPYRTKIYSR-ILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFAS----- 497
I + + + I + I L++GI + D+ Y FL +S SQ+R+ +++A
Sbjct: 731 -----INNIDHMSNIVTEGIYLTLKNGIQVADRVYSFLGWSNSQMRDQGCYLYAPRVNAL 785
Query: 498 NDEVSA--EDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSD 555
EV+ ED+R WMG F SV K +RMGQ F+ ++ T+ + + PD+E +
Sbjct: 786 TGEVTGTVEDIRVWMGDFRDAISVPKMMSRMGQCFTQAQPTVRLERHHWIVEPDIEGGVE 845
Query: 556 GNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRN-----SFRKL 610
N YCFSDG G+IS+ A +++ L P+ FQ+R+ G+KG++ +D + K+
Sbjct: 846 -NKYCFSDGCGRISIKLATHISKILQLKEVPACFQVRFKGFKGILVIDPTIDDIINMPKV 904
Query: 611 SLRRSMLKF-----ESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQ---- 661
R+S KF E ++ L V K++ P LNR I++L + K +
Sbjct: 905 IFRKSQQKFGEGGGELQDEYLEVVKYAMPSPVCLNRPFITILDQVSEKQSASSHRRITNR 964
Query: 662 -----QQQLILLGKMLINR-EAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLL 715
+++L L MLIN +AA +++ + N N K G+E +V+P + ML
Sbjct: 965 VHYYLERELCSLSNMLINENQAAEELVNRTNLAIDWNAASKR--AGFELSVDPLIRDMLF 1022
Query: 716 SHHENQLSDLKSRCRIYVPK--GRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFF 773
S + + S+ +I++P GR + G DETG+L YGQVF++ + +
Sbjct: 1023 SIYRYNIIHHISKAKIFLPPSLGRSMYGVVDETGLLQYGQVFIQYSPS-----------I 1071
Query: 774 HRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNE 833
+ ++ + GKVL+TKNPC PGDVRV +AV++ L VD ++FPQ G RPHP+E
Sbjct: 1072 RQTSNRPILKTGKVLITKNPCHVPGDVRVFDAVWQPALAH--LVDVVVFPQHGPRPHPDE 1129
Query: 834 CSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTL 893
+G DLDGD + I WD +++ E M + + D + T +++ +FF+ Y+ D++
Sbjct: 1130 MAGSDLDGDEYSIIWDQEMLLDYNEEAMVFPSSSAAEEDKEPTTDDMVEFFLRYLQQDSI 1189
Query: 894 GAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEF-PDFME 952
G +S AHL +AD C +A ++AVDF K+G PAE + + E PD+M
Sbjct: 1190 GRMSHAHLAYADL--HGLFHENCHAIALKCAVAVDFPKSGVPAEPLSSFEQCEMTPDYMM 1247
Query: 953 REDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLG---- 1008
KP Y S + G+L+R + ++ + E YD + + + F G
Sbjct: 1248 SGGKPMYYSTRLNGQLHRKA-RKVEEVLEEFETRGSVFEREYDKLICPEDVDVFFGNEIK 1306
Query: 1009 --VAESHKEMYEEEMNALMNYYGASTEDEILTGNLRN--RASYLQRDNRRYGDMKDRILL 1064
+ ++ Y + M L++ YG E +++G+ + R + ++RD+ + + L
Sbjct: 1307 LVQTLTLRDEYVDRMQQLLDEYGIEDEASVVSGHAASIKRLAGMERDDYSFYHTDKVVEL 1366
Query: 1065 SAKNLQN--EAK--EWFGSS--------------CKENEHPQLASAWYHVTY-SPSYCKE 1105
+ L AK E FG C + H ++ WY V Y P K
Sbjct: 1367 RYEKLYAVFRAKFFEEFGGEEINIENDGKNTRLKCTKAMHEKIRQ-WYFVAYVQPKINKA 1425
Query: 1106 -RMALLSFPWIVGDILLNIK 1124
R S PW+ D L +++
Sbjct: 1426 GRCIGQSLPWVAWDALCDLR 1445
>gi|367021614|ref|XP_003660092.1| hypothetical protein MYCTH_2297939 [Myceliophthora thermophila ATCC
42464]
gi|347007359|gb|AEO54847.1| hypothetical protein MYCTH_2297939 [Myceliophthora thermophila ATCC
42464]
Length = 1033
Score = 308 bits (790), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 197/562 (35%), Positives = 298/562 (53%), Gaps = 49/562 (8%)
Query: 383 DHNVMSCY--------------RALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTF 428
DH M+ Y RA+VTP ++Y P +ETSN VV+ + F+RV F
Sbjct: 493 DHGAMTYYPATLHIPDYCALIRRAIVTPTRMYFSTPTVETSNRVVRRYQHIQDHFLRVQF 552
Query: 429 VEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLR 488
+E L + + R ++Y+R+ ++ GI +G H++FLAF SQ+R
Sbjct: 553 TDE---LLDGRIRACEVDRD-------DELYARVCRVMTQGIRMGKWHWKFLAFGNSQIR 602
Query: 489 NNSVWMFASNDE--VSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEM 546
++ + F ++ V+ + +R WMG F+ I SV+K AAR+GQ FS+++ + +
Sbjct: 603 ESAAFFFCEPEDGSVTCDSIRQWMGNFDHITSVAKLAARLGQCFSTTRLLHCISSPRIAR 662
Query: 547 IPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRN- 605
IPDVE N +CF+DGIGKISL A VA+ L PSA Q R GG KGV+ N
Sbjct: 663 IPDVE---SENGFCFTDGIGKISLPLACLVAEDWKLDRPPSAVQFRMGGCKGVLVQWPNV 719
Query: 606 SFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQL 665
++ +R S KF + L + + S+ LNR+ I +LS LGV DEVF M Q+
Sbjct: 720 KGTEIHIRPSQEKFCAEYNGLEIIRCSQFSCATLNRQTILILSCLGVSDEVFIDMMASQI 779
Query: 666 ILLGKMLINREAALDVLQKLNGVD---SKNILVKMLLQGYEPNVEPYLSMMLLSHHENQL 722
+ +++ A+++L N VD + + ML G+ EP++ +L +
Sbjct: 780 ANFDAAMTDKDTAVELLD--NYVDENLTTTTIASMLRNGFMHTREPFVRTVLQLWRSWSI 837
Query: 723 SDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQ--SFFHRVDDKT 780
LK + R+ V +G ++GC DETG L + + R T + + S+DQ F +V D+
Sbjct: 838 KALKEKARLVVEQGAFVLGCVDETGTL---RGYSRATEGQSNV-SRDQLPQIFFQVPDRD 893
Query: 781 -----SIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECS 835
+V G +V +NP LHPGD+RV+EAV +L + D ++FP +G+R P+ CS
Sbjct: 894 HRHAYKVVTGLCIVGRNPSLHPGDIRVVEAVDVPQL--RHLRDVVVFPLRGDRDVPSMCS 951
Query: 836 GGDLDGDIFFISWDNDLIPCE-TEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLG 894
GGDLDGD FF+ WD L+P E PPM+Y+ + I + + FFV +M ND L
Sbjct: 952 GGDLDGDDFFVIWDPRLLPAEWGHPPMNYSAPQPPIESRASLAKSLAFFFVLFMKNDRLP 1011
Query: 895 AISTAHLVHADRDPDKARSSKC 916
I+ AHL AD + + A+ KC
Sbjct: 1012 LIAHAHLARADYELEGAKHWKC 1033
>gi|308510538|ref|XP_003117452.1| CRE-RRF-3 protein [Caenorhabditis remanei]
gi|308242366|gb|EFO86318.1| CRE-RRF-3 protein [Caenorhabditis remanei]
Length = 1779
Score = 308 bits (789), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 257/909 (28%), Positives = 432/909 (47%), Gaps = 122/909 (13%)
Query: 295 RPGFNLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVL---QKLHKLKSI 351
RP L HE LF L + + A + L Q+L+ +L VL ++K + +
Sbjct: 594 RP-MELEHEPLF-LKLVRRGMRECPQAVEETLEQLLNAFDERRSLDVLFAFSTMYKARKV 651
Query: 352 CYDPVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNY 411
Y+ + + G + + + L+ + + N +S + +V+P ++ + PE+ N
Sbjct: 652 QYERL--------LSGESLQDVGLA---KPLPKNCVSVAKVIVSPSRVLLMAPEVMMVNR 700
Query: 412 VVKNFAK-YASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGI 470
+V+ F YA +R F +++ +L S + + + I L+ GI
Sbjct: 701 IVRRFGPDYA---LRCVFRDDNLGRLAIRDFSVNNIDHM-----SNVVTEAIYNTLKSGI 752
Query: 471 VIGDKHYEFLAFSASQLRNNSVWMFASN-DEVSA------EDVRGWMGCFNKIRSVSKCA 523
I D+ Y FL +S SQ+R+ +++A D ++ ED+R WMG F SV K
Sbjct: 753 KIADRVYSFLGWSNSQMRDQGCYLYAPRVDPITGAVTGTVEDIRIWMGDFRDAVSVPKMM 812
Query: 524 ARMGQLFSSSKQTL-VVPV------------QDVEMI--PDVEVTSDGNTYCFSDGIGKI 568
+RMGQ F+ ++ T+ V P+ Q I PD+E D N +CFSDG G+I
Sbjct: 813 SRMGQCFTQAQPTVRVSPILFQLNFLFQVKLQRHHWIVEPDMEGGPD-NKFCFSDGCGRI 871
Query: 569 SLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRN-----SFRKLSLRRSMLKF---- 619
S A +++ L P+ FQ+R+ G+KG++ +D + K+ R+S KF
Sbjct: 872 SYKLAGHISKILDLKAIPACFQVRFKGFKGILVIDPTIDDIMNMPKVIFRKSQQKFGEGG 931
Query: 620 -ESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQ---------QQQLILLG 669
+ ++ L V K++ P LNR I++L + K + +++L L
Sbjct: 932 GDLQDEYLEVVKYAMPSPVCLNRPFITILDQVSAKQSTASHRRITKRVHYYLERELCSLS 991
Query: 670 KMLINR-EAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSR 728
ML+N +AA +++ + N N+ K G++ + +P + ML + + + S+
Sbjct: 992 NMLLNENQAAEELVNRTNLPIDWNLASKR--AGFQLSTDPLVRSMLFAIYRYNIIHHISK 1049
Query: 729 CRIYVPK--GRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGK 786
+I++P GR + G DETG+L YGQVF++ + T + D + GK
Sbjct: 1050 AKIFLPPNLGRSMYGVVDETGLLQYGQVFIQYSPT-----------IRQTSDTPILKTGK 1098
Query: 787 VLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFI 846
VL+TKNPC PGDVRV EAV++ L VD ++FP+ G RPHP+E +G DLDGD + I
Sbjct: 1099 VLITKNPCHVPGDVRVFEAVWQPALAH--LVDVVVFPRHGPRPHPDEMAGSDLDGDEYSI 1156
Query: 847 SWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADR 906
WD D++ E M + S+ D + T +++ +FF+ Y+ D++G +S AHLV+AD
Sbjct: 1157 IWDQDMLLDYNETAMVFPSSSSQEEDKEPTTDDMVEFFLRYLQQDSIGRMSNAHLVYADL 1216
Query: 907 DPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPK--EFPDFMEREDKPRYISFGV 964
+ C +A ++AVDF K+G PAE PL + PD+M KP Y S +
Sbjct: 1217 --NGLFHENCHSIALKCAVAVDFPKSGVPAE-PLTSHEQCDVTPDYMISGGKPMYYSARL 1273
Query: 965 LGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESH-------KEMY 1017
G+L+R + ++ I E YD + + + F G +ES ++ Y
Sbjct: 1274 NGQLHRKA-RKVEEVLEEYESRGSIFEGEYDKLICPENVDVFFG-SESKLVQVMTLRDEY 1331
Query: 1018 EEEMNALMNYYGASTEDEILTGNLRN--RASYLQRDNRRYGDMKDRILLSAKNLQN--EA 1073
+ M L++ YG E +++G+ + R + ++RD+ + + L + L + A
Sbjct: 1332 IDRMQQLLDEYGIEDEASVVSGHAASIKRLAGMERDDYSFYHTDKVVELRYEKLYSVFRA 1391
Query: 1074 K--EWFGS--------------SCKENEHPQLASAWYHVTY-SPSYCKE-RMALLSFPWI 1115
K E FG +C H ++ WY V Y P K R S PW+
Sbjct: 1392 KFFEEFGGEEANTVHDGKDTRVACTPAMHEKIRQ-WYFVAYVQPKKNKTGRYIGQSLPWV 1450
Query: 1116 VGDILLNIK 1124
D+L +++
Sbjct: 1451 AWDVLCSLR 1459
>gi|341885460|gb|EGT41395.1| CBN-RRF-3 protein [Caenorhabditis brenneri]
Length = 1736
Score = 308 bits (789), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 242/826 (29%), Positives = 401/826 (48%), Gaps = 92/826 (11%)
Query: 360 KTQLHVL--GRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFA 417
KTQ L G + + + L+ + + N + + +VTP +I + PE+ N +V+ F
Sbjct: 621 KTQYERLLSGESLQDVGLA---KPLPKNCVQVAKVIVTPSRILLMAPEVMMVNRIVRRFG 677
Query: 418 K-YASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKH 476
YA +R F +++ +L S + + + I L+ G+ + D+
Sbjct: 678 PDYA---LRCVFRDDNLGRLAIRDFSVNNIDHL-----SNIVTESIFNTLKYGVQVADRK 729
Query: 477 YEFLAFSASQLRNNSVWMFA-----SNDEVSA--EDVRGWMGCFNKIRSVSKCAARMGQL 529
Y FL +S SQ+R+ +++A + VS E++R WMG F + SV K +RMGQ
Sbjct: 730 YSFLGWSNSQMRDQGCYLYAPRVDPATGRVSGTVEEIRKWMGDFREAVSVPKMMSRMGQC 789
Query: 530 FSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAF 589
F+ ++ T+ + + + PDVE G YCFSDG G+IS+ A + + L TP+ F
Sbjct: 790 FTQAQPTVRLERRHWIVEPDVEGGLSGK-YCFSDGCGRISVKLANHITRILELKETPACF 848
Query: 590 QIRYGGYKGVIAVDRN-----SFRKLSLRRSMLKF-----ESRNRMLNVTKWSESMPCFL 639
Q+R+ G+KG++ +D K+ R+S KF + ++ L V K++ P L
Sbjct: 849 QVRFKGFKGILVIDPTIDDIIGMPKVIFRKSQQKFGEGGGDQQDEYLEVVKYAMPSPVCL 908
Query: 640 NREIISLLSTLGVKDEVFEAMQ---------QQQLILLGKMLINR-EAALDVLQKLNGVD 689
NR I++L + K + +++L L ML+N +AA +++ + N
Sbjct: 909 NRPFITILDQVSAKQSASSHRRITNRIHYYLERELCSLSNMLLNENQAAEELVNRTNLPI 968
Query: 690 SKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPK--GRLLIGCFDETG 747
N K G++ + +P + ML S + + S+ +I++P GR + G DETG
Sbjct: 969 DWNKASKH--AGFQLSKDPLIRSMLFSIYRYNIIHHISKAKIFLPPDLGRSMYGVVDETG 1026
Query: 748 ILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVK-GKVLVTKNPCLHPGDVRVLEAV 806
+L YGQVF++ + QS R T I+K GKVL+TKNPC PGDVRV EAV
Sbjct: 1027 LLQYGQVFIQYS----------QSI--RQTSATPILKTGKVLITKNPCHVPGDVRVFEAV 1074
Query: 807 YEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGR 866
++ L VD ++FP+ G RPHP+E +G DLDGD + I WD +++ E M Y
Sbjct: 1075 WQPALAH--LVDVVVFPRHGPRPHPDEMAGSDLDGDEYSIIWDQEMLLDYNEEAMIYPSS 1132
Query: 867 RSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMA 926
+ D + T +++ +FF+ Y+ D++G +S AHL +AD C ++A ++A
Sbjct: 1133 TAPEEDKEPTTDDMVEFFLRYLQQDSIGRMSNAHLTYADL--HGLFHENCRNIALKCAVA 1190
Query: 927 VDFAKTGAPAEMPLALKPKEF-PDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIW 985
VDF K+G PAE + + E PD+M KP Y S + G+L+R + ++
Sbjct: 1191 VDFPKSGVPAEPLASFEQCEMTPDYMATGGKPMYYSPRLNGQLHRKA-RKVEEVLEEYET 1249
Query: 986 SEKIAEASYDHDLEVDGFEAFLGV------AESHKEMYEEEMNALMNYYGASTEDEILTG 1039
I E YD + D + F G A ++ Y + M L++ YG E +++G
Sbjct: 1250 RGSIFEGEYDKIICPDDADVFFGSEAKLVQAMMIRDEYIDRMQQLLDEYGIEDEASVVSG 1309
Query: 1040 NLRN--RASYLQRDNRRYGDMKDRILLSAKNLQN--EAK--EWFGSSCKE--NEHPQL-- 1089
+ + R + ++RD+ + + L + L + AK E FG N+ ++
Sbjct: 1310 HAASIKRLAGMERDDYSFYHTDKIVELRYEKLYHVFRAKFFEEFGGEAAHLVNDGSKMRL 1369
Query: 1090 ---------ASAWYHVTY-SPSYCKE-RMALLSFPWIVGDILLNIK 1124
WY V+Y P K + S PW+V D L +++
Sbjct: 1370 NCTKAMREKVRQWYFVSYVQPKKNKTGKFIGQSLPWVVWDALCDLR 1415
>gi|312082346|ref|XP_003143407.1| RNA dependent RNA polymerase [Loa loa]
Length = 1312
Score = 308 bits (788), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 245/837 (29%), Positives = 391/837 (46%), Gaps = 118/837 (14%)
Query: 378 HKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLP 437
H+R + +A++TP ++ + PEL N V++ F ++ +R+ F ++D + L
Sbjct: 211 HERSANEGFQRVRKAVITPTRMLLVVPELLMGNRVLREFDEHGDRALRIQFRDDDGTHLR 270
Query: 438 ANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFAS 497
N + + I I + + L GI I + H+ +LA S SQ+R+N + F
Sbjct: 271 RNKVGSYI------------IETTVHNCLLHGIYISNSHFVYLASSNSQMRDNGCYFFND 318
Query: 498 NDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQT-LVVPVQDVEMIPDVEVTSD- 555
D+ +R +G F++ ++ K +RMGQ F+ SK++ +V+ + DV D
Sbjct: 319 GDDGRVGKIREKLGKFDRT-NIPKLMSRMGQCFTQSKESDVVLKRKKYNKTYDVIGGKDS 377
Query: 556 -GNTYCFSDGIGKISLSFARQVAQKCGLSH-TPSAFQIRYGGYKGVIAVD---------- 603
G + FSDG+GK+S FA ++A+ GL+ PS FQ R G KGV++VD
Sbjct: 378 CGEPFIFSDGVGKLSEDFAERIAKDLGLNKCVPSCFQFRLRGLKGVLSVDPALRQRRLWA 437
Query: 604 -----RNSFRKLS--------LRRSMLKFES-RNRMLNVTKWSESMPCFLNREIISLLST 649
+ RK R S KF + R M+ + K+S P LNR I++L
Sbjct: 438 ECNDVEDKNRKTEKVNDLDVLFRPSQDKFHAPRKEMIEIVKYSSPTPVCLNRPFINILDQ 497
Query: 650 LG------VKDEV---FEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQ 700
+ V + + +QL+ L L++ + L + N+ L +
Sbjct: 498 VSDMQGFDVHRRIVHRIHGLLDRQLLQLSDALMSENKCRERLAEFPR--RINVQYLSLAR 555
Query: 701 GYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPK--GRLLIGCFDETGILNYGQVFVRV 758
G+ EP+ +L++ L + +I +P GR + G DETG+L YGQVFV+
Sbjct: 556 GFTLTQEPFFRGLLIASVRFTLQKQLFKEQIQIPANLGRTMFGILDETGLLQYGQVFVQF 615
Query: 759 TMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVD 818
T L++ ++ +IVKG VL+TKNP + GDVRV EA+ +L + VD
Sbjct: 616 T-NNVSLKTPSKA------AAKTIVKGPVLITKNPSIVAGDVRVFEAIDLPEL--RHLVD 666
Query: 819 CIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTG--RRSRIMDHDVT 876
++FPQ G RPH +E +G DLDGD + + WD+ ++ E PMD++ R +++ D
Sbjct: 667 VVVFPQHGPRPHTDEMAGSDLDGDEYSVIWDDQMLFDHNEEPMDFSKLVRPPDLLEEDEV 726
Query: 877 LEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPA 936
+ E+ +F+V Y++ D++G I+ A L A+ D S C +A HS +VDF KTG P
Sbjct: 727 VREMRRFYVKYIMQDSVGVIANAFL--ANSDMFGIASDICTSIAEKHSQSVDFPKTGWPP 784
Query: 937 E--------------MPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSN 982
MP +P+ +PDFM + +P Y+S ++G+L+R + + + +
Sbjct: 785 RPLVKEWSKGPDGKIMP-PERPERWPDFMCKTHEPSYVSTRLVGQLFR-RIRLVHDVLTI 842
Query: 983 AIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTG--- 1039
SE ++ D LE G+E++ A + Y + ALM+ YG E ++ +G
Sbjct: 843 TAVSEGHSQIVVDPLLEYHGWESYENNANLNLIAYSAHIKALMDNYGIEDEYQLFSGCFS 902
Query: 1040 NLRNRASYLQRDNRRYGDMKDRILLSAKNLQN--------------------EAKEWFGS 1079
+RNR S RD + K L N E + F S
Sbjct: 903 KIRNRIS--DRDTDDMSQFNTNFFIEQK-LTNIFMSFRSSFFAEFGDFMSCTEPDDDFHS 959
Query: 1080 ---------SCKENEHPQLASAWYHVTYSPSYCKERMALLSFPWIVGDILLNIKSVN 1127
C E + ASA+Y V Y + LLSFPWI DIL IK N
Sbjct: 960 KDMTERRYCKCPTMEMKKKASAYYIVCYRKAVNGIGERLLSFPWIAWDILAEIKKEN 1016
>gi|393908637|gb|EJD75145.1| CBR-RRF-1 protein [Loa loa]
Length = 1689
Score = 308 bits (788), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 245/837 (29%), Positives = 391/837 (46%), Gaps = 118/837 (14%)
Query: 378 HKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLP 437
H+R + +A++TP ++ + PEL N V++ F ++ +R+ F ++D + L
Sbjct: 575 HERSANEGFQRVRKAVITPTRMLLVVPELLMGNRVLREFDEHGDRALRIQFRDDDGTHLR 634
Query: 438 ANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFAS 497
N + + I I + + L GI I + H+ +LA S SQ+R+N + F
Sbjct: 635 RNKVGSYI------------IETTVHNCLLHGIYISNSHFVYLASSNSQMRDNGCYFFND 682
Query: 498 NDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQT-LVVPVQDVEMIPDVEVTSD- 555
D+ +R +G F++ ++ K +RMGQ F+ SK++ +V+ + DV D
Sbjct: 683 GDDGRVGKIREKLGKFDRT-NIPKLMSRMGQCFTQSKESDVVLKRKKYNKTYDVIGGKDS 741
Query: 556 -GNTYCFSDGIGKISLSFARQVAQKCGLSH-TPSAFQIRYGGYKGVIAVD---------- 603
G + FSDG+GK+S FA ++A+ GL+ PS FQ R G KGV++VD
Sbjct: 742 CGEPFIFSDGVGKLSEDFAERIAKDLGLNKCVPSCFQFRLRGLKGVLSVDPALRQRRLWA 801
Query: 604 -----RNSFRKLS--------LRRSMLKFES-RNRMLNVTKWSESMPCFLNREIISLLST 649
+ RK R S KF + R M+ + K+S P LNR I++L
Sbjct: 802 ECNDVEDKNRKTEKVNDLDVLFRPSQDKFHAPRKEMIEIVKYSSPTPVCLNRPFINILDQ 861
Query: 650 LG------VKDEV---FEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQ 700
+ V + + +QL+ L L++ + L + N+ L +
Sbjct: 862 VSDMQGFDVHRRIVHRIHGLLDRQLLQLSDALMSENKCRERLAEFP--RRINVQYLSLAR 919
Query: 701 GYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPK--GRLLIGCFDETGILNYGQVFVRV 758
G+ EP+ +L++ L + +I +P GR + G DETG+L YGQVFV+
Sbjct: 920 GFTLTQEPFFRGLLIASVRFTLQKQLFKEQIQIPANLGRTMFGILDETGLLQYGQVFVQF 979
Query: 759 TMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVD 818
T L++ ++ +IVKG VL+TKNP + GDVRV EA+ +L + VD
Sbjct: 980 T-NNVSLKTPSKA------AAKTIVKGPVLITKNPSIVAGDVRVFEAIDLPEL--RHLVD 1030
Query: 819 CIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTG--RRSRIMDHDVT 876
++FPQ G RPH +E +G DLDGD + + WD+ ++ E PMD++ R +++ D
Sbjct: 1031 VVVFPQHGPRPHTDEMAGSDLDGDEYSVIWDDQMLFDHNEEPMDFSKLVRPPDLLEEDEV 1090
Query: 877 LEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPA 936
+ E+ +F+V Y++ D++G I+ A L A+ D S C +A HS +VDF KTG P
Sbjct: 1091 VREMRRFYVKYIMQDSVGVIANAFL--ANSDMFGIASDICTSIAEKHSQSVDFPKTGWPP 1148
Query: 937 E--------------MPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSN 982
MP +P+ +PDFM + +P Y+S ++G+L+R + + + +
Sbjct: 1149 RPLVKEWSKGPDGKIMP-PERPERWPDFMCKTHEPSYVSTRLVGQLFR-RIRLVHDVLTI 1206
Query: 983 AIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTG--- 1039
SE ++ D LE G+E++ A + Y + ALM+ YG E ++ +G
Sbjct: 1207 TAVSEGHSQIVVDPLLEYHGWESYENNANLNLIAYSAHIKALMDNYGIEDEYQLFSGCFS 1266
Query: 1040 NLRNRASYLQRDNRRYGDMKDRILLSAKNLQN--------------------EAKEWFGS 1079
+RNR S RD + K L N E + F S
Sbjct: 1267 KIRNRIS--DRDTDDMSQFNTNFFIEQK-LTNIFMSFRSSFFAEFGDFMSCTEPDDDFHS 1323
Query: 1080 ---------SCKENEHPQLASAWYHVTYSPSYCKERMALLSFPWIVGDILLNIKSVN 1127
C E + ASA+Y V Y + LLSFPWI DIL IK N
Sbjct: 1324 KDMTERRYCKCPTMEMKKKASAYYIVCYRKAVNGIGERLLSFPWIAWDILAEIKKEN 1380
>gi|118386404|ref|XP_001026321.1| RNA dependent RNA polymerase family protein [Tetrahymena thermophila]
gi|89308088|gb|EAS06076.1| RNA dependent RNA polymerase family protein [Tetrahymena thermophila
SB210]
Length = 1439
Score = 305 bits (780), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 246/836 (29%), Positives = 399/836 (47%), Gaps = 131/836 (15%)
Query: 295 RPGFNLSHEVLFQLNSLVHNQKVSLVAADAEL----IQILSGLSMETALMVLQKLHKLKS 350
R FNLS+ +L +L+ + K+S+V L +QI G S +Q + K
Sbjct: 457 RYSFNLSYSIL----TLISHNKLSVVKLREFLDYIDLQIRDGKSEYILEKGIQYYYNQKK 512
Query: 351 ICYDPVSFVKTQL--HVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELET 408
+ ++F Q+ + R + + D V++ R +TP + ELE
Sbjct: 513 EI-NRLNFTAFQILFQDVQRQENYFKIQEIRAKRDVKVIATRRVSITPSGLIYNLKELEL 571
Query: 409 SNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYS-RILTILQ 467
SN V++ F F+R TF ++ +L + S+ +R K+ S ++L
Sbjct: 572 SNRVLRIFQDSTDSFIRGTFQDD--------SLENAKHMKYVSRYFRQKLKSFKVL---- 619
Query: 468 DGIVIGDKHYEFLAF--SASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAAR 525
++EF+ F SASQLRN+S W F + + +DV +G F+ I +K +AR
Sbjct: 620 --------NWEFINFGWSASQLRNSSSWFFHETEVLKKQDVITRIGDFSGINPPAKKSAR 671
Query: 526 MGQLFSSSKQTLVVPVQDVEMIPDV-------EVTSDGN-------TYCFSDGIGKISLS 571
+GQ FSSS ++ ++E I D+ EV ++GN F+DGIG IS
Sbjct: 672 IGQCFSSSTPYILKERPNIEFIDDITTPSAVQEVDANGNICYFRQKKKVFTDGIGTISQD 731
Query: 572 FARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSFRK--LSLRRSMLKF----ESRNRM 625
R+++ + A Q+RYGG KGV+ +D S +K + LR SM+K+ E +
Sbjct: 732 LIRKISDHLN-AFFMCAIQVRYGGAKGVLTIDYKSDKKNTIQLRESMIKYKITDEQDELI 790
Query: 626 LNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKL 685
+++ ++ +LNR++I LL +LG+++E F QQ+ + L K + + +
Sbjct: 791 IDILDRNKYRFGYLNRQVIILLRSLGIENEQFIQAQQEYIEELNKSALKDASIFTLFNTD 850
Query: 686 NGVDSKNIL-VKMLLQGYEPN-----VEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLL 739
D + + LL+ + + + + ++ + + L+ + I++ K L
Sbjct: 851 YSKDGTRLFPITHLLRSMQTSRIDMAQDIFCKGVIHTLKKRGFYILRKKSNIFLKKSARL 910
Query: 740 IGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGD 799
+G DE +L +VF ++ E +SFF V+G V+V KNPCLHPGD
Sbjct: 911 MGVIDEYNVLEQDEVFAYISQDSE------KSFFQ--------VEGDVIVVKNPCLHPGD 956
Query: 800 VRVLEAV----YEMKLEE------KDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWD 849
+R L+AV +L E K + +IFPQKG+ P ++ +G DLDGD +FI WD
Sbjct: 957 IRKLKAVTLETISQRLGEGKINPFKKLRNILIFPQKGKEPITSQIAGSDLDGDCYFICWD 1016
Query: 850 NDLIPCETEPPMDY----TGRRSRIMD--HDVTL---------------------EEIHK 882
IP E + P +Y ++ +I +D+ + E++
Sbjct: 1017 QRFIPLEQKEPFNYDEDDNSQKKQISQEQYDIEISKKPNTQFKTKNPVREVIDDNEQMLD 1076
Query: 883 FFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLAL 942
FF+D++ N+ LG I +HLV AD+ P A KCL LA+LH+ AVD+AKTG ++P L
Sbjct: 1077 FFIDFINNENLGKIDNSHLVFADKSPLYAEDPKCLKLASLHAQAVDYAKTGISPQLPKNL 1136
Query: 943 KPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDG 1002
KE+PDFME++DKP Y S +LG LYR D + N I ++ ++ D++L +
Sbjct: 1137 AIKEYPDFMEKDDKPSYQSQSILGILYRQVKDQYEKHCKNDIEGDR-SQTFIDNNL-IFN 1194
Query: 1003 FEAFLG--VAESHKEMYEE---------------EMNALMNYYGASTEDEILTGNL 1041
F+ V E + Y E E+N L ++GA E EI TGN
Sbjct: 1195 PPTFVNEIVDEQENKTYLEQEIDFAIEANNQWNIEINNLKQFFGAQNEFEIYTGNF 1250
>gi|111610628|gb|ABH11712.1| RNA-dependent RNA polymerase [Tetrahymena thermophila]
Length = 1434
Score = 305 bits (780), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 246/835 (29%), Positives = 398/835 (47%), Gaps = 129/835 (15%)
Query: 295 RPGFNLSHEVLFQLNSLVHNQKVSLVAADAEL----IQILSGLSMETALMVLQKLHKLKS 350
R FNLS+ +L +L+ + K+S+V L +QI G S +Q + K
Sbjct: 452 RYSFNLSYSIL----TLISHNKLSVVKLREFLDYIDLQIRDGKSEYILEKGIQYYYNQKK 507
Query: 351 ICYDPVSFVKTQL--HVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELET 408
+ ++F Q+ + R + + D V++ R +TP + ELE
Sbjct: 508 EI-NRLNFTAFQILFQDVQRQENYFKIQEIRAKRDVKVIATRRVSITPSGLIYNLKELEL 566
Query: 409 SNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQD 468
SN V++ F F+R TF ++ +L + S+ +R K+ S +L
Sbjct: 567 SNRVLRIFQDSTDSFIRGTFQDD--------SLENAKHMKYVSRYFRQKLKS--FKVL-- 614
Query: 469 GIVIGDKHYEFLAF--SASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARM 526
++EF+ F SASQLRN+S W F + + +DV +G F+ I +K +AR+
Sbjct: 615 -------NWEFINFGWSASQLRNSSSWFFHETEVLKKQDVITRIGDFSGINPPAKKSARI 667
Query: 527 GQLFSSSKQTLVVPVQDVEMIPDV-------EVTSDGN-------TYCFSDGIGKISLSF 572
GQ FSSS ++ ++E I D+ EV ++GN F+DGIG IS
Sbjct: 668 GQCFSSSTPYILKERPNIEFIDDITTPSAVQEVDANGNICYFRQKKKVFTDGIGTISQDL 727
Query: 573 ARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSFRK--LSLRRSMLKF----ESRNRML 626
R+++ + A Q+RYGG KGV+ +D S +K + LR SM+K+ E ++
Sbjct: 728 IRKISDHLN-AFFMCAIQVRYGGAKGVLTIDYKSDKKNTIQLRESMIKYKITDEQDELII 786
Query: 627 NVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLN 686
++ ++ +LNR++I LL +LG+++E F QQ+ + L K + + +
Sbjct: 787 DILDRNKYRFGYLNRQVIILLRSLGIENEQFIQAQQEYIEELNKSALKDASIFTLFNTDY 846
Query: 687 GVDSKNIL-VKMLLQGYEPN-----VEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLI 740
D + + LL+ + + + + ++ + + L+ + I++ K L+
Sbjct: 847 SKDGTRLFPITHLLRSMQTSRIDMAQDIFCKGVIHTLKKRGFYILRKKSNIFLKKSARLM 906
Query: 741 GCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDV 800
G DE +L +VF ++ E +SFF V+G V+V KNPCLHPGD+
Sbjct: 907 GVIDEYNVLEQDEVFAYISQDSE------KSFFQ--------VEGDVIVVKNPCLHPGDI 952
Query: 801 RVLEAV----YEMKLEE------KDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDN 850
R L+AV +L E K + +IFPQKG+ P ++ +G DLDGD +FI WD
Sbjct: 953 RKLKAVTLETISQRLGEGKINPFKKLRNILIFPQKGKEPITSQIAGSDLDGDCYFICWDQ 1012
Query: 851 DLIPCETEPPMDY----TGRRSRIMD--HDVTL---------------------EEIHKF 883
IP E + P +Y ++ +I +D+ + E++ F
Sbjct: 1013 RFIPLEQKEPFNYDEDDNSQKKQISQEQYDIEISKKPNTQFKTKNPVREVIDDNEQMLDF 1072
Query: 884 FVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALK 943
F+D++ N+ LG I +HLV AD+ P A KCL LA+LH+ AVD+AKTG ++P L
Sbjct: 1073 FIDFINNENLGKIDNSHLVFADKSPLYAEDPKCLKLASLHAQAVDYAKTGISPQLPKNLA 1132
Query: 944 PKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGF 1003
KE+PDFME++DKP Y S +LG LYR D + N I ++ ++ D++L +
Sbjct: 1133 IKEYPDFMEKDDKPSYQSQSILGILYRQVKDQYEKHCKNDIEGDR-SQTFIDNNL-IFNP 1190
Query: 1004 EAFLG--VAESHKEMYEE---------------EMNALMNYYGASTEDEILTGNL 1041
F+ V E + Y E E+N L ++GA E EI TGN
Sbjct: 1191 PTFVNEIVDEQENKTYLEQEIDFAIEANNQWNIEINNLKQFFGAQNEFEIYTGNF 1245
>gi|241633126|ref|XP_002410398.1| RNA-directed RNA polymerase, putative [Ixodes scapularis]
gi|215503415|gb|EEC12909.1| RNA-directed RNA polymerase, putative [Ixodes scapularis]
Length = 529
Score = 301 bits (772), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 200/540 (37%), Positives = 288/540 (53%), Gaps = 29/540 (5%)
Query: 506 VRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPV--QDVEMIPDV---EVTSDGNTYC 560
+R WMG F+ I SV+K ARMGQ FSS+++++ VP+ + VE PD+ + G +
Sbjct: 1 IRRWMGDFSNIPSVAKKMARMGQCFSSTEESVKVPLDGKAVEDRPDIVGGKHPRSGRPFI 60
Query: 561 FSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRN-SFRKLSLRRSMLKF 619
FSDGIG IS +V +K ++ PSA QIRY GYKG++ V+ KL LR SM KF
Sbjct: 61 FSDGIGMISQPLLEKVCKKLEMAQIPSAIQIRYAGYKGMLCVNPLLPGDKLVLRESMRKF 120
Query: 620 E-SRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAA 678
S + L V K S P LNR +I++L LGV VF +QQ+ +++ L+ A
Sbjct: 121 TCSSSDSLEVIKVSAPRPVCLNRPLITILEQLGVPSRVFLCLQQKMVLMFADALVCESTA 180
Query: 679 LDVL-QKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVP--K 735
L VL L+G ++ + G P++ +L + +++ + L ++ RI VP K
Sbjct: 181 LQVLCTYLSGALP---FRRLRMHGLCLTRNPFVRSLLYTVYKSTMDGLHTKSRIAVPLNK 237
Query: 736 GRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIV--KGKVLVTKNP 793
GR ++G DET L YGQVFV+ T + E +D KT I+ G VLVTK P
Sbjct: 238 GRNMLGVLDETDTLKYGQVFVQYTALGPDTEGQDDGL-----PKTRIIFCTGAVLVTKCP 292
Query: 794 CLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI 853
CLHPGDVR AV L DC++FP +G RPHPNE +G DLDGD + + W DL+
Sbjct: 293 CLHPGDVRKFTAVDVPALHHVK--DCVVFPARGPRPHPNEMAGSDLDGDEYVVIWKKDLL 350
Query: 854 -PCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKAR 912
P M ++ + + LE + +F +Y+ ND +G +S AHL AD D
Sbjct: 351 FPGPNRKAMVFSDHSAPCDANKSLLEGMIQFVCNYIKNDNVGIMSNAHLAWADSLEDGIF 410
Query: 913 SSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMER-EDKPRYISFGVLGKLYR- 970
S +CL +A S +DFAKTG + + KP ++PDFME+ K Y S VLG LYR
Sbjct: 411 SKQCLQIARKISTCLDFAKTGETSYLNKDEKPIQYPDFMEKGSSKDTYRSKRVLGHLYRL 470
Query: 971 -ATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYG 1029
+L++++ + A+ S + G+E + AES + Y +M + YG
Sbjct: 471 HRSLEAVVGTDFQTCVEDGDADCSL---FALPGWEEYAAAAESVRANYASQMARIRRQYG 527
>gi|119196681|ref|XP_001248944.1| hypothetical protein CIMG_02715 [Coccidioides immitis RS]
Length = 1155
Score = 301 bits (771), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 223/752 (29%), Positives = 364/752 (48%), Gaps = 116/752 (15%)
Query: 376 SSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSK 435
S+ L+ N + +RA VTP Y GP +ET N V++ + + ++F+RV FV+E
Sbjct: 403 STRLNLVHPNNVKVHRAQVTPSGTYLYGPNIETKNRVLRQYNDHINNFLRVEFVDETGD- 461
Query: 436 LPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMF 495
P + IF + R +L+ GI IG H+ FL FS S LR+ + W
Sbjct: 462 -PVYFDPQASLHNIF--------HERFKGVLKQGIKIGGCHFSFLGFSHSSLRSQTCWFV 512
Query: 496 A-----SNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDV 550
A S + A+ + +G F+ I S +K AAR+GQ FS ++ ++ +P +D + +
Sbjct: 513 APFTTSSGERFDAQSIIQGLGSFSHIYSPAKLAARIGQTFSETQTSIAIP-EDAVFLNEP 571
Query: 551 EVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHT--PSAFQIRYGGYKGVIAVD-RNSF 607
++ +G FSDG+G S ++ + L P+ FQIR+ G KG++++D R
Sbjct: 572 DMKRNGR--VFSDGVGTFSPRLLYKIWSEYALREKVKPTVFQIRFAGAKGMVSLDTRLKG 629
Query: 608 RKLSLRRSMLKFESRNRMLNVTKWS---ESMPCFLNREIISLLSTLGVKDEVFEAMQQ-- 662
+L LR SM+KF +R R N+ ++P +LN +II +L LGV F +Q
Sbjct: 630 EQLRLRESMVKFSAR-RAFNIEVCGSGIRALPFYLNAQIIKILEDLGVPPTGFIKLQSDE 688
Query: 663 -QQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQ-----GYEPNVEPYLSMMLLS 716
++L+ +GK L+ +K + V L++ G+ + +P+L ++
Sbjct: 689 IERLLSVGKSASKTSQFLE-----ESSIAKEVRVPWLIEILHGLGFHHDQDPFLRSVVQL 743
Query: 717 HHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRV 776
++ DLK R RI VP+ L G DETG LN G++F +F +
Sbjct: 744 AIFFKMRDLKYRARIRVPEAVTLYGIMDETGYLNEGEIFC--------------TFLNEE 789
Query: 777 DDKTSIVKGKVLVTKNPCLHPGDVRVLEAV-YEMKLEEKDYVDCIIFPQKGERPHPNECS 835
+ +V+ +V+VT+ P LHPGDV+ +AV + +C+IF Q G R P+ S
Sbjct: 790 GGREILVRDQVIVTRAPALHPGDVQYAKAVDVPENSPLRSLHNCVIFSQHGFRDLPSMLS 849
Query: 836 GGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGA 895
GGDLDGD++ + +D L+P T PP +Y +++D +V ++I FFV +M D LG
Sbjct: 850 GGDLDGDLYNVIYDERLMPPCTYPPANYPKVEEKLLDREVVRDDIIDFFVTFMQQDQLGR 909
Query: 896 ISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMP-LALKPKEFPDFME-- 952
I+T H AD+ P CL LA LHS+AVDF+K+G P ++ + +P+ +PDFM
Sbjct: 910 IATIHQAIADQRPAGTLDQDCLLLAELHSVAVDFSKSGIPVDLTRIPKRPRYYPDFMAPS 969
Query: 953 ----------------------------REDKPRYISFGVLGKLYR--------ATLDSI 976
R + Y S +LG +YR + +
Sbjct: 970 PRIKIADSIEVVEEEQYLAEDEDDDEDERPQRRYYKSNRILGVMYRNINEQEFLNAVRNA 1029
Query: 977 MQIRS------NAIWSEKIAEA---SYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNY 1027
++R NAIW +E +DH +E DG + K++YE+++ +M
Sbjct: 1030 SKLRRDDNTLLNAIWDYVASETEGFQWDHLVE-DGRKV--------KDIYEDKLREIMQQ 1080
Query: 1028 YGAS------TEDEILTGNLRNRASYLQRDNR 1053
Y + TE E++ G++ + S R ++
Sbjct: 1081 YSKTPWKSSLTEVEVVMGSILGQNSKQSRRDK 1112
>gi|290974592|ref|XP_002670029.1| RNA-directed RNA polymerase [Naegleria gruberi]
gi|284083583|gb|EFC37285.1| RNA-directed RNA polymerase [Naegleria gruberi]
Length = 663
Score = 300 bits (768), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 199/623 (31%), Positives = 326/623 (52%), Gaps = 51/623 (8%)
Query: 510 MGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKIS 569
MG F I++ +K AAR GQ +S+ ++ + +D+E + D+E N + F+DGIGKIS
Sbjct: 1 MGDFTDIKTPAKVAARFGQCLTSTTPSIEI-TKDIEPVEDIE----RNGFTFTDGIGKIS 55
Query: 570 LSFARQVAQKCGLSHTP-SAFQIRYGGYKGVIAVDRN-SFRKLSLRRSMLKFESRNRMLN 627
++V +K L + SA Q R GG KGV+A+D ++ R+S KF S + L
Sbjct: 56 EEMMQRVKEKLQLGESLLSAIQFRCGGGKGVLAIDPTLKGEQIVFRKSQFKFTSIQKQLE 115
Query: 628 VTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNG 687
+ +S+ FLNR+ I++L+ LG+KDE+F Q++ + + + + A + L +
Sbjct: 116 IVDYSKRRSGFLNRQFITILTALGIKDEIFMTKQREMIRSILSITDDVSKAYEWLSIYHS 175
Query: 688 VDSKNILVKMLLQGYEPNV---EPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFD 744
++ + +L Y P + E ++ ML S+ E L L+ + +IY+ K L+G D
Sbjct: 176 NHTRTFICHVL--KYVPEIATSENFIMNMLSSYKEQLLKGLRDKTKIYIEKSAYLMGAID 233
Query: 745 ETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLE 804
E G+L ++FV ++ FHR + + +VKG+ +V KNP LH GD+R++
Sbjct: 234 EYGVLEENEIFVNLS-----------PIFHRPNAEFGVVKGRCIVGKNPSLHKGDLRIVT 282
Query: 805 AVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYT 864
AV +L + D ++F +KG+RP N +G DLDGD FF+ WD DLIP PMDY+
Sbjct: 283 AVDRPELYHLN--DVVVFSKKGKRPITNMITGSDLDGDQFFVYWDPDLIPESDSEPMDYS 340
Query: 865 ---------GRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSK 915
+ ++ + ++I FF++++ + LG I+ HL ++D + S +
Sbjct: 341 VGAVAKPTNKKDEEEEEYKIKQDDIIDFFIEFITRNNLGLIANTHLANSDFRKNGLTSKE 400
Query: 916 CLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDS 975
CL L LHS AVD AK+G A +P +K E+P FM K +Y S VLGKL+ T
Sbjct: 401 CLTLCELHSTAVDSAKSGKFAIIPSKVKLYEYPHFMISSMKRKYKSKKVLGKLFDET--- 457
Query: 976 IMQIRSNAIWSEKIAEASYDHD--LEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTE 1033
Q + E + + H+ L VDGF+ +L E H Y +N+ M YG E
Sbjct: 458 --QFK-----HETPGKCNKKHNSLLIVDGFDKYLKEIEPHYYNYSRFVNSDMVKYGVEDE 510
Query: 1034 DEILTGNLR-NRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSCKENEHPQLASA 1092
+I++G + N + +++ + + I K+ +N +E E+E +ASA
Sbjct: 511 SQIISGWINTNIKCFGHKEHDIHETIAITISFYLKHFRNVFEEMV-RKYGESERLAIASA 569
Query: 1093 WYHVTYSPSYCKERMALLSFPWI 1115
WY++T++ K + + SF WI
Sbjct: 570 WYYITHTE---KNQFNIFSFGWI 589
>gi|324500541|gb|ADY40252.1| RNA-dependent RNA polymerase EGO-1 [Ascaris suum]
gi|333440978|gb|AEF32764.1| RdRP1 [Ascaris suum]
Length = 1644
Score = 300 bits (767), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 249/830 (30%), Positives = 396/830 (47%), Gaps = 135/830 (16%)
Query: 391 RALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIF 450
+ ++TP ++ + PEL N V++NF K + +RV F ++D S+L N + +
Sbjct: 547 KVVITPTRMLFVVPELLMGNRVLRNFDKDGNGSLRVQFRDDDSSQLRRNTVGPFL----- 601
Query: 451 SKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWM 510
I S + L GI IG +H+ +L S SQLR+N + F A+ +R +
Sbjct: 602 -------IQSTVFNTLTRGIHIGSRHFVYLGSSNSQLRDNGCYFFDDGKGGHAQWIRTQL 654
Query: 511 GCFNKIRSVSKCAARMGQLFSSSKQTLVV-PVQDVEMIPDVEVTSD--GNTYCFSDGIGK 567
G F++ ++ K +RMGQ F+ +KQ VV DV D G Y FSDG+G+
Sbjct: 655 GKFDR-GNIPKMMSRMGQCFTQAKQCAVVLKRHKYNKTWDVIGGRDSRGEPYIFSDGVGR 713
Query: 568 ISLSFARQVAQKCGLSHT-PSAFQIRYGGYKGVIAVD----------------------- 603
+S FA ++A+ L++ PS FQIR+ G KGV++VD
Sbjct: 714 LSQEFAEKIAKDINLANAVPSCFQIRHRGMKGVLSVDPLLDDRKQWAIAHGIKDGSMATS 773
Query: 604 RNSFRKLSLRRSMLKFES-RNRMLNVTKWSESMPCFLNREIISLLST----------LGV 652
R + + R S KF++ R+ + + K+S LNR +IS+L + V
Sbjct: 774 RINDLAVVFRPSQDKFKAPRDEAIEIVKYSSPTCVSLNRPMISILDQVSSMQGHTVHMTV 833
Query: 653 KDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSM 712
+ + E + Q L+ L ++ ++ + D L +L + N+ L++G+ EP+
Sbjct: 834 TERIHELLDMQ-LMELAEIFLDEDRCRDKLNELPRL--MNVDRLSLVRGFALTQEPFFRS 890
Query: 713 MLLSHHENQLSDLKSRCRIYVPK--GRLLIGCFDETGILNYGQVFVRVTMTREELESKDQ 770
+L + L ++ +I +P GR + G DETG L GQ+FV+ T +
Sbjct: 891 LLRASVRYTLKKQLAKEQILIPSHLGRSMFGVMDETGQLQSGQIFVQYTNNVWLKNPPPR 950
Query: 771 SFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPH 830
+ +I+KG VL+TKNPC+ GDVR+LEAV +L VD ++FPQ G RPH
Sbjct: 951 A-------AKTILKGPVLMTKNPCIVAGDVRLLEAVDIPELHH--LVDVVVFPQYGPRPH 1001
Query: 831 PNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRI--MDHDVTLEEIHKFFVDYM 888
P+E +G DLDGD + + WD L+ E P+D+T R + + D E+ KFFV+Y+
Sbjct: 1002 PDEMAGSDLDGDEYSVIWDKKLMFIRNENPLDFTKRMRKYEEVGTDKVDLEMRKFFVNYI 1061
Query: 889 INDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPL-------- 940
D++G+I+ A LV+AD S C ++A HS AVDF KTG E PL
Sbjct: 1062 KQDSIGSIANAFLVNADL--YGITSEICENIAKKHSQAVDFPKTGDAPE-PLTRVWTIGK 1118
Query: 941 --ALKPKE----FPDFMEREDKPRYISFGVLGKLYRAT--LDSIMQIRSNAIWSEKIAEA 992
+ P E +PDFM + +P YIS ++G+LYR +D ++ + S +++ E
Sbjct: 1119 DGSFVPPERSERWPDFMCKNHEPSYISPRLVGQLYRRIRLVDDVLTLTSAL---DEVTEL 1175
Query: 993 SYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGN---LRNRASYLQ 1049
D L+ G+E + A + Y + A+++ YG E ++L+G +RNR S
Sbjct: 1176 ELDPMLQYPGWEKYAENARLQLDSYNAHIRAILDNYGIQDEGQLLSGCISVIRNRISDRD 1235
Query: 1050 RDN--------------------------RRYGDMK-----DRILLSAKNLQNEAK---- 1074
D+ R +G + DR ++ N +E +
Sbjct: 1236 VDDMSFFNTNHVIEKKVASIFRMFRHAFFREFGGYERCTEVDREGATSDNGDDERRVCLN 1295
Query: 1075 EWFGSSCKENEHPQLASAWYHVTYSPSYCKERMALLSFPWIVGDILLNIK 1124
+ CK ASA+Y V Y + R LLSF W+ D+L ++K
Sbjct: 1296 PTYSMRCK-------ASAYYVVCYQEAAESTR-RLLSFGWLAWDVLSHVK 1337
>gi|407917163|gb|EKG10484.1| RNA-dependent RNA polymerase eukaryotic-type [Macrophomina phaseolina
MS6]
Length = 1221
Score = 299 bits (766), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 251/859 (29%), Positives = 399/859 (46%), Gaps = 138/859 (16%)
Query: 299 NLSHEVLFQLNSLVHN------QKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSIC 352
NL V FQ+ L N + V+L+ L L L A+ +L + +
Sbjct: 329 NLKFPVKFQVERLARNAYLPPAKVVALLPTIKRLTGQLGYLRTAMAIRMLARDIQYPGPH 388
Query: 353 YDPVSF-VKTQLHVLGRNCKSIPLSS-----HKRLIDHNVMSCYRALVTPMKIYCLGPEL 406
DP +F V L RN K + +KR ++ +R ++TP Y GPE
Sbjct: 389 LDPENFNVDFLARALARNAKEFKIEGSIYDVNKR--HKHIALIHRVIITPAGTYLEGPEP 446
Query: 407 ETSNYVVKNFAKYASDFMRVTFVEEDWSKL---PANALSTSIQRGIFSKPYRTKIYSRIL 463
E SN V++ + ++ +F+RV FV+E+ + P +L IF ++R
Sbjct: 447 EVSNRVLRKYPEHTDNFLRVQFVDEEGDAIRYEPKTSLGE-----IF--------HNRFK 493
Query: 464 TILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDE----VSAEDVRGWMGCFNKIRSV 519
++L I IG + FL FS S LR+ + W A + ++A++V +G F+KIRS
Sbjct: 494 SVLDGEINIGGHSFAFLGFSHSSLRSQTCWFMAPFVQKLSLIAAQEVIKGLGDFSKIRSP 553
Query: 520 SKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQ- 578
+KCAAR+GQ FS + T+ V + ++MI DV + + FSDG+GKIS ++V +
Sbjct: 554 AKCAARIGQAFSDTSGTVTVNEEIIKMIDDVR---NDRGHIFSDGVGKISYKLLKRVWKE 610
Query: 579 -KCGLSHTPSAFQIRYGGYKGVIAVD-RNSFRKLSLRRSMLKFESRNRMLNVTKWS---- 632
+ P+ QIR+GG KGV+++D R +L LR SM+KF W+
Sbjct: 611 YQQARGQRPTCLQIRFGGAKGVVSLDDRLPGEQLVLRPSMVKF------YGAGTWNIEIC 664
Query: 633 ----ESMPCFLNREIISLLSTLGVKDEVFEAMQQ---QQLILLGKMLINREAALDVLQKL 685
+P +LNR+ I +L LGV +VF +Q +QL + K +N L+ +
Sbjct: 665 GANFRPLPMYLNRQFIKILEDLGVPAQVFLDLQSAMVEQLRRITKSPVNAATFLEHARVG 724
Query: 686 NGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDE 745
++L + G+ N + +LS ++ +QL D+K R RI V +G L G DE
Sbjct: 725 QATRMPHLLRMLDELGFSFNEDEFLSHVVEIAALSQLRDIKHRSRIQVDRGVTLYGIMDE 784
Query: 746 TGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEA 805
TG L +++ + + K +T + G+V+VT++P +HPGDV+ A
Sbjct: 785 TGFLGEDEIYCVIERIGDNGRPK----------RTVLSGGEVIVTRSPAMHPGDVQKARA 834
Query: 806 V-YEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYT 864
V + + ++F KG+R P++ SGGDLDGD++ + +D L+P T P DY
Sbjct: 835 VDVPPDSPLQALSNVVVFSSKGQRDLPSQLSGGDLDGDLYNVIFDRRLMPRVTYQPADYK 894
Query: 865 GRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHS 924
+ VT ++I FFV +M D LG IS H+ ADR P+ CL LA + S
Sbjct: 895 KVPPLDIGRPVTRQDITDFFVKFMETDQLGRISNIHMQLADRRPNGTLDPDCLKLAEMAS 954
Query: 925 MAVDFAKTGAPAEMPLALKPKEF-PDFMEREDKPR------------------------- 958
+AVDF+KTG P +M + PDFM + PR
Sbjct: 955 IAVDFSKTGIPVDMSQCPRVDMIRPDFM--ANGPRVIVEKKGAVFQDEDEDDLLDDDDAV 1012
Query: 959 ------------YISFGVLGKLYRATLDSIM---------QIRS--------NAIWSEKI 989
Y S VLG+LYRA + + + +S + +W+ +
Sbjct: 1013 GALDPDFKTFRYYESERVLGQLYRAIDEKKIFQEMQRYATETKSHLGGLNLMDQVWAYVL 1072
Query: 990 AEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGAS-----TEDEILTGNLRNR 1044
EA+ ++ DG++ +A S KE YE + +M+ Y +E E+ GN+ +
Sbjct: 1073 REAAL---IQWDGYKP---LARSIKETYESNLLDIMSDYSTHSQYPLSELEVFGGNIIGK 1126
Query: 1045 ASYLQ--RDNRRYGDMKDR 1061
++ Q R R +M +R
Sbjct: 1127 STGAQNRRTRERTMEMNER 1145
>gi|105990550|gb|ABF81697.1| truncated MOP1 [Zea mays]
Length = 310
Score = 299 bits (766), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 152/314 (48%), Positives = 207/314 (65%), Gaps = 5/314 (1%)
Query: 194 LKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKSIGCSTSFFWEIKN 253
L Y P+I+ +SG V S+F DR+H CKED F WVR DF+ S G ++ ++
Sbjct: 1 LTYAPRIHTAISGSTVKSRFTDDRFHACKEDAKFAWVRALDFTPNSSFGECSTLVLKLSK 60
Query: 254 GLLASDISNIFPFYKEDKTDLILEEGEEFCTTSEIVPLVKCRPGFNLSHEVLFQLNSLVH 313
G S I PF E +L + + F ++S +VPLV C GF++ +EVLF+LNSLVH
Sbjct: 61 GASVSYILESLPFSGE-LGELAIASMDVFGSSSNVVPLVDCPNGFSVPYEVLFRLNSLVH 119
Query: 314 NQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSFVKTQLHVLGRNCKSI 373
K+ +A+L ++L LS++T + +K+ KLKS CY+P+ F++ + H + K++
Sbjct: 120 MGKLVARHVNADLFKVLEDLSIDTLRRIFEKMSKLKSTCYEPLQFIRHEAHSMNMRKKAL 179
Query: 374 PLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDW 433
S+KR +M CYR +TP KIYCLGPE E SNYVVK ++YASDF RVTFV+EDW
Sbjct: 180 ---SNKRE-SGKLMRCYRIHITPSKIYCLGPEEEVSNYVVKYHSEYASDFARVTFVDEDW 235
Query: 434 SKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVW 493
SKL NALS ++G FSKP +T +Y RIL+IL++G IG K YEFLAFSASQLR NSVW
Sbjct: 236 SKLSPNALSARTEQGFFSKPLKTGLYHRILSILKEGFCIGPKKYEFLAFSASQLRGNSVW 295
Query: 494 MFASNDEVSAEDVR 507
MFASN ++AE++R
Sbjct: 296 MFASNSSLTAENIR 309
>gi|164429758|ref|XP_964248.2| hypothetical protein NCU02178 [Neurospora crassa OR74A]
gi|157073607|gb|EAA35012.2| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 1049
Score = 298 bits (763), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 188/545 (34%), Positives = 293/545 (53%), Gaps = 31/545 (5%)
Query: 381 LIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASD-FMRVTFVEEDWSKLPAN 439
+I ++ R +TP +IY P +E +N V++ + K+A D F+R+ F +E
Sbjct: 526 MIPNHCAWVRRVTITPTRIYFSTPCVEPTNRVIRQW-KHAQDYFIRIQFTDE-------- 576
Query: 440 ALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASND 499
L I+ G P ++ R+ +L+ G+ +G H++FLAF SQ+R +MF
Sbjct: 577 VLEGRIKSGEAELP----LFLRVYRVLEKGVAMGPWHWKFLAFGNSQIREAGAFMFCEQS 632
Query: 500 EVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTY 559
++ + +R WMG F+ I+ ++K AAR+GQ FS+++ +P + IPDVE DG +
Sbjct: 633 NLTGDMMRAWMGRFSHIKVIAKYAARLGQCFSTTRLVPGIPAPRIVTIPDVE--KDG--F 688
Query: 560 CFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRN-SFRKLSLRRSMLK 618
CF+DG+GKIS A+ VA + PSA+Q R GG KGV+ + ++ +R+S K
Sbjct: 689 CFTDGVGKISPLLAKIVAHDWSIDPPPSAYQFRMGGCKGVLVTWPDVKGMEVHIRKSQEK 748
Query: 619 FESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAA 678
F + L V + S+ LNR+II++LS+LGV D+VF M +QQL + +++ A
Sbjct: 749 FVAEFNGLEVVRCSQFSTATLNRQIIAVLSSLGVPDQVFVDMMEQQLSDFNAAMEDKQKA 808
Query: 679 LDVLQKLNGVDSKN---ILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPK 735
+L+ +D + I+ +ML G+ + EP++ +L + LK + R+ V K
Sbjct: 809 TAILKTF--IDENHMTPIIAEMLAYGFMGSQEPFVRTLLQLWRSWSIKTLKEKARLNVEK 866
Query: 736 GRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTS---IVKGKVLVTKN 792
++GC DETG L G + V E Q F DD ++ G +V +N
Sbjct: 867 SAFVLGCVDETGTLK-GHMKVIEDWKDVSSEKLPQIFLQIPDDVNGGYRVITGTCVVGRN 925
Query: 793 PCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDL 852
P LHPGD+RV+EAV L + D ++FP G+R P+ CSGGDLDGD FF+ WD L
Sbjct: 926 PSLHPGDIRVVEAVDVPAL--RHLRDVVVFPLTGDRDVPSMCSGGDLDGDDFFVIWDPLL 983
Query: 853 IPCE-TEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKA 911
IP E + PPM + + + T+ + FFV YM + L I+ AHL AD + +
Sbjct: 984 IPKERSHPPMISEPIAGKELATEPTVNNLITFFVLYMKYNNLPLIAHAHLATADAEVEGV 1043
Query: 912 RSSKC 916
+S KC
Sbjct: 1044 KSPKC 1048
>gi|345563096|gb|EGX46100.1| hypothetical protein AOL_s00110g264 [Arthrobotrys oligospora ATCC
24927]
Length = 1279
Score = 296 bits (758), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 194/587 (33%), Positives = 301/587 (51%), Gaps = 47/587 (8%)
Query: 385 NVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTS 444
N + +R +TP ++ GP LE N V++ + Y + F+RV+ VEED L
Sbjct: 459 NQVLIHRMSITPTGMFPGGPNLEPKNRVLREYHDYLNHFLRVSLVEEDGGDL-------R 511
Query: 445 IQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFAS----NDE 500
+ G+ K + L + + I + ++FL FS S LR+++ W A+
Sbjct: 512 FESGVDGKYIYDGRFLPFLMPESNLLKIAGRTFKFLGFSQSSLRSHTAWFMATISTPRRT 571
Query: 501 VSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPD----VEVTSDG 556
++ + V +G F I+ KCAAR+GQ F+ + + + D MI +++ G
Sbjct: 572 ITVDGVIERLGDFKSIKIPGKCAARIGQAFTDTVANIKI---DDFMIAQKRDIIKIAPGG 628
Query: 557 NTYCFSDGIGKISLSFARQVAQKCGLSH--TPSAFQIRYGGYKGVIAVDRNSFRK-LSLR 613
Y FSDG G +S + +K + P+ FQIR+ G KGV+A+D L L
Sbjct: 629 KKYTFSDGCGTVSKPLIELIWKKGEFTSDPKPTVFQIRFRGAKGVVALDSTQRDPILCLY 688
Query: 614 RSMLKFES-RNRMLNVTK-WSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKM 671
SM+KF+ +N++ + + +++ +P +LNR II +L GV + F +Q + L L +
Sbjct: 689 DSMVKFDGLKNKVFEICRSFTKPLPFYLNRCIIKILEDRGVPIKNFMDLQGRALATLRER 748
Query: 672 LINREAALDVLQKLNGVDSKNI--LVKMLLQ-GYEPNVEPYLSMMLLSHHENQLSDLKSR 728
++A L N NI L++ L G++ + +L ++ L D+K R
Sbjct: 749 TFTPDSAAHFLDYQNRCTQANIPFLIRELFALGWDYKEDNFLRKVVEFTMLTTLRDMKYR 808
Query: 729 CRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVL 788
RI V KG L+G DETG L G+++ + R K +G V
Sbjct: 809 ARIQVDKGFTLVGVLDETGYLQEGEIYCPI---------------QREGGKREAHRGVVA 853
Query: 789 VTKNPCLHPGDVRVLEAV---YEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFF 845
+ +NP LHPGD++++ AV Y+ L +D ++C++F Q+G+R P+ SGGDLDGDIF
Sbjct: 854 ICRNPALHPGDIQIVTAVEVPYDSPL--RDLMNCVVFSQRGQRDLPSMLSGGDLDGDIFH 911
Query: 846 ISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHAD 905
I W+ L+P + P D+ + D DVT +I KFF+D+M ND LG IS AH+V AD
Sbjct: 912 IWWEPSLMPRFSSAPSDFPAVEALNYDRDVTQADIGKFFLDFMENDKLGVISVAHMVLAD 971
Query: 906 RDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMP-LALKPKEFPDFM 951
++P RS+ CL A + S AVDF KTG P M L PK PDF+
Sbjct: 972 QEPAGVRSAACLTCARMASQAVDFPKTGVPVRMSELPRTPKARPDFL 1018
>gi|358366477|dbj|GAA83098.1| rna-dependent rna polymerase [Aspergillus kawachii IFO 4308]
Length = 1212
Score = 294 bits (752), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 245/853 (28%), Positives = 396/853 (46%), Gaps = 109/853 (12%)
Query: 291 LVKCRPGFNLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETA-------LMVLQ 343
L C +L +LFQL +L +N + + +++ +TA ++ L+
Sbjct: 306 LATCTRNNSLPFGILFQLQALAYNAYLLPRTVQSLTQELVKAYREDTAAQRKPISVLALK 365
Query: 344 KLHKL---KSICYDPVSF-VKTQLHVLGRNCKSI----PLSSHKRLIDHNVMSCYRALVT 395
KL + S +P + V + L +N K + +S N+ ++ +VT
Sbjct: 366 KLFDMIDWPSPHSNPTDYEVGALMAALKQNQKDVLQDLAVSGDILGPSENLTPIHKVMVT 425
Query: 396 PMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYR 455
P ++ GPELE N +++ F K+ F+RV F +E+ L N S+ +
Sbjct: 426 PTRVTLHGPELEPRNRILRRFPKHHDFFIRVQFCDENGQDLHFN-----------SRVHY 474
Query: 456 TKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAE-----DVRGWM 510
++SR ++L GI I + Y FL +S S LR+++VW + + S + + +
Sbjct: 475 DDVFSRFKSVLTRGIQIAGRTYSFLGWSHSSLRSHAVWFSSPFVDESGQFQTHFSIIKAL 534
Query: 511 GCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISL 570
G F+KI+S ++CAAR+GQ F+ + + + D+ + +VTS+ FSDG+G +S
Sbjct: 535 GDFSKIQSPARCAARIGQAFTDTHYAISLSEYDINVSEVADVTSNDGKRVFSDGVGTLSW 594
Query: 571 SFA----RQVAQKCGLSHTPSAFQIRYGGYKGVIAVD-RNSFRKLSLRRSMLKFESRNRM 625
A + +K GL P+ FQ+R GG KG++AVD R S ++++R SM+KF+ +
Sbjct: 595 DVAETIWHHIPEKKGL---PTCFQVRLGGAKGMLAVDGRLSGSQVNIRPSMIKFQGDMKD 651
Query: 626 LNVTKWS-ESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQK 684
L + + + M LNR++I +L +G DE F +Q+ L L + + + +V K
Sbjct: 652 LEICDMAAKPMGLVLNRQMIKILEDMGTPDEWFITLQEAALTKLRSVTASAHNS-EVFIK 710
Query: 685 LNGVDSKNILVKML----LQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLI 740
V L ++ L+ + EP++ ++ + +L LK + RI V KG L
Sbjct: 711 KQAVGDSIGLYRLFRHCHLRDLDYKKEPFIRSVVEAVVLKELRLLKHKARIPVFKGITLF 770
Query: 741 GCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDV 800
G DETG+L QV+V T E +E + H + G VLVT++P LH GD+
Sbjct: 771 GVMDETGLLEAEQVYV----TYEPVEGR-----HAPPPNS----GTVLVTRSPALHDGDI 817
Query: 801 RVLEAVYEMKLEE-KDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEP 859
+ + V + +CI+F KG R P++ SGGDLDGDIF + WD D P T
Sbjct: 818 QYAQNVIPPDNHPLAELTNCIVFSSKGYRDLPSQLSGGDLDGDIFNVIWDTDAYPVRTFA 877
Query: 860 PMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHL 919
P DY + V +++ +FF+D+M D LG I+T H++ AD++ + C L
Sbjct: 878 PADYPRVSPVDIGRPVERDDMAQFFLDFMKTDHLGMIATRHMIMADQEEEGTSHPVCRQL 937
Query: 920 ATLHSMAVDFAKTGAPAEMPLALKPKEF-PDFMEREDKPR-------------------- 958
A LHS AVDF+KTG P ++ K F PDFM R
Sbjct: 938 AQLHSTAVDFSKTGIPVQLGDIPKGNPFRPDFMAPGPVARIHNKSEIELEEYVIQTAYDE 997
Query: 959 ----------YISFGVLGKLYRAT---------LDSIMQIRSNAIWSEKI-AEASYDHDL 998
Y S +LGKLYR + S +Q + W+E + + + L
Sbjct: 998 DNDLEPFHRYYRSDKILGKLYRGVDERHIWQKDIQSKVQPNEDEFWNEFLWSTLERCNKL 1057
Query: 999 EVDGFEAFLGVAESHKEMYEEEMNALMNYYGAS-----TEDEILTGNLRNRASYLQRDNR 1053
+E +L A YEE + + N Y +E E+ G++ N+ R R
Sbjct: 1058 GNLSWERWLDEARHICLRYEEAVFSARNNYSEHPIEPLSELEVFIGSVLNKGGVQTRRQR 1117
Query: 1054 ----RYGDMKDRI 1062
+ D DRI
Sbjct: 1118 DQSNKLADEFDRI 1130
>gi|242809058|ref|XP_002485290.1| RNA-dependent RNA polymerase, putative [Talaromyces stipitatus ATCC
10500]
gi|218715915|gb|EED15337.1| RNA-dependent RNA polymerase, putative [Talaromyces stipitatus ATCC
10500]
Length = 1207
Score = 294 bits (752), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 199/585 (34%), Positives = 305/585 (52%), Gaps = 42/585 (7%)
Query: 382 IDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANAL 441
+ HN M +R VTP IY GP +E N V++ + + F+RV F+EE + + +
Sbjct: 408 LHHNQMEIHRLSVTPTGIYLDGPNVEAENRVLRKYRHQSDYFIRVRFIEESGDPMMYD-I 466
Query: 442 STSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDE- 500
S+++ R IF R +L+DG++I D+HY FL FS S LR+ S W A +
Sbjct: 467 SSNLDR-IFK--------DRFGEVLRDGVIIADRHYRFLGFSHSSLRSRSCWFMAEFHDS 517
Query: 501 ----VSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDG 556
++ + +G F+ IRS +K AAR+GQ FS + ++ V V+ I DVE
Sbjct: 518 EGQLITVNSLISKLGDFSHIRSPAKFAARLGQTFSDTLTSISVDRDMVKRIDDVE----R 573
Query: 557 NTYCFSDGIGKISLSFARQVAQKCGLSHT--PSAFQIRYGGYKGVIAVD-RNSFRKLSLR 613
N FSDG G IS ++ + + P+ FQ+R G KG++++D R + LR
Sbjct: 574 NGRVFSDGCGTISKEVLWRIYRDYPRNAAVRPTVFQVRISGAKGMLSLDPRLKGPTICLR 633
Query: 614 RSMLKF--ESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKM 671
SM+KF E+ + + S+PC+LN +I +L LGV ++F +Q++++ L
Sbjct: 634 DSMIKFRAEADHNIEICGSGIHSLPCYLNAPLIKILEDLGVARDLFLELQREEVQNLRLA 693
Query: 672 LINREAALDVLQKLNGVDSKNI--LVKMLLQ-GYEPNVEPYLSMMLLSHHENQLSDLKSR 728
+ + A L + + S + L+ +L G N + +L + +L DLK R
Sbjct: 694 IRSPRQAASFLDQAHITKSTRLSWLITVLQSMGLNYNQDKFLKRAVELVILMKLRDLKYR 753
Query: 729 CRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVL 788
RI VP+ L G DETG L G++FV + E+ + + +V+ KVL
Sbjct: 754 ARILVPEAVTLYGIMDETGYLQEGEIFVPIL---NEVTKR----------RNILVQNKVL 800
Query: 789 VTKNPCLHPGDVRVLEAVYEMKLEE-KDYVDCIIFPQKGERPHPNECSGGDLDGDIFFIS 847
+T++P HPGDV+++ AV + + +C++F QKGER P++ SGGDLDGDIF I
Sbjct: 801 ITRSPAFHPGDVQMVNAVNVPEASPLRKLHNCVVFSQKGERDLPSQLSGGDLDGDIFNII 860
Query: 848 WDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRD 907
+D P DY ++D V +E+I KFF+++M D LG I+T H + AD+
Sbjct: 861 YDPRFRLQRLARPADYPRAPGTVLDRPVQMEDIQKFFIEFMQQDQLGRIATTHKILADQQ 920
Query: 908 PDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALK-PKEFPDFM 951
CL LA LHS AVDF+KTG P ++ K P PDFM
Sbjct: 921 AAGTFDPNCLTLAHLHSTAVDFSKTGTPVDIKQIPKYPPYRPDFM 965
>gi|440476070|gb|ELQ44707.1| RNA-dependent rna polymerase [Magnaporthe oryzae Y34]
gi|440486893|gb|ELQ66719.1| RNA-dependent rna polymerase [Magnaporthe oryzae P131]
Length = 1338
Score = 293 bits (751), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 208/668 (31%), Positives = 326/668 (48%), Gaps = 93/668 (13%)
Query: 385 NVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTS 444
N+ YR +VTP +I GPE+E N V++ + K+ F+RV F +E+ + S
Sbjct: 450 NLTHIYRVVVTPTRITLHGPEIENKNRVLRKYPKHQDCFVRVQFCDENTQDI---RFSPK 506
Query: 445 IQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWM----FASNDE 500
I ++YSR L +L GI I + Y FL FS S LR +S W F +
Sbjct: 507 ISY--------DRVYSRFLDVLNRGIQIAGRVYNFLGFSHSSLRTHSAWFSAPFFDQGSQ 558
Query: 501 VSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMI---PDVEVTSDGN 557
+ + +G F+ I+ +KCAAR+GQ FS + + + DVE++ PD+ T+
Sbjct: 559 HTHASIIKSLGEFSSIQCPAKCAARIGQAFSETPSVVDLRDHDVEVVTHFPDI--TNRDG 616
Query: 558 TYCFSDGIGKISLSFARQVAQKCGLS-HTPSAFQIRYGGYKGVIAVDRN-SFRKLSLRRS 615
+ FSDG+GKIS S + + + + P+ FQ+R+GG KG++A+D K+ R S
Sbjct: 617 SRVFSDGVGKISESMMHIIWENIPMKKNAPTCFQVRWGGAKGMLALDMTLKGTKVCFRDS 676
Query: 616 MLKFESRN--RMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLI 673
M KFES + ++ S+ +P LNR++I +L +G F +Q +L L
Sbjct: 677 MTKFESDDVHQLEICDSGSKPIPLVLNRQMIKILEDMGTDRSWFMRLQSYRLQEL----- 731
Query: 674 NREAALDVLQKLNGVDSKNILVKMLL---------QGYEPNVEPYLSMMLLSHHENQLSD 724
R + +D++N+ + L G + + ++ ++ + +L
Sbjct: 732 -RSITASAYNTWHFLDAQNVGQAIKLGKFINFADKHGMDYRTDDFMRSVVEAVVLRELRL 790
Query: 725 LKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVK 784
LK + RI V G+ L G DETG L G+V + ++ D T
Sbjct: 791 LKHKARIPVKYGKTLFGIIDETGYLREGEVVISFGFSQTG-----------EDQPTPPQD 839
Query: 785 GK-VLVTKNPCLHPGDVRVLEAVYEMKLEE-KDYVDCIIFPQKGERPHPNECSGGDLDGD 842
G+ V+VT++P LHPGD+++ + V +++CIIF Q G+R P++ SGGDLDGD
Sbjct: 840 GQIVIVTRSPALHPGDIQIAKQVVPPPSHPLSHHINCIIFSQHGQRDLPSQLSGGDLDGD 899
Query: 843 IFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLV 902
I+ + WD D +P ET P DY ++ + V ++ +FF+D+M D LG I+T H++
Sbjct: 900 IYNVIWDGDAMPKETFDPADYPRVEAQDIGRRVVSADMAQFFIDFMKTDHLGVIATRHVI 959
Query: 903 HADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEF-PDFME--------- 952
AD+ D S +C LA LHS AVDF+K+G PAE+ + +F PDF+
Sbjct: 960 LADQLDDGTLSQECRTLAGLHSTAVDFSKSGIPAELKALPRANKFRPDFLSPGPITNYHD 1019
Query: 953 --------------------REDKPRYISF---GVLGKLYRATLDSIMQIRSNAIWSEKI 989
D PRY + VLG+LYR +I IW+E I
Sbjct: 1020 KGKITLEEYTISEEAEEEEEEGDGPRYGYYRSEKVLGQLYR-------EIDEEKIWNENI 1072
Query: 990 AEASYDHD 997
+ DH+
Sbjct: 1073 -RVAVDHN 1079
>gi|389628880|ref|XP_003712093.1| RNA-dependent RNA polymerase [Magnaporthe oryzae 70-15]
gi|351644425|gb|EHA52286.1| RNA-dependent RNA polymerase [Magnaporthe oryzae 70-15]
Length = 1292
Score = 293 bits (751), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 208/668 (31%), Positives = 326/668 (48%), Gaps = 93/668 (13%)
Query: 385 NVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTS 444
N+ YR +VTP +I GPE+E N V++ + K+ F+RV F +E+ + S
Sbjct: 450 NLTHIYRVVVTPTRITLHGPEIENKNRVLRKYPKHQDCFVRVQFCDENTQDI---RFSPK 506
Query: 445 IQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWM----FASNDE 500
I ++YSR L +L GI I + Y FL FS S LR +S W F +
Sbjct: 507 ISY--------DRVYSRFLDVLNRGIQIAGRVYNFLGFSHSSLRTHSAWFSAPFFDQGSQ 558
Query: 501 VSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMI---PDVEVTSDGN 557
+ + +G F+ I+ +KCAAR+GQ FS + + + DVE++ PD+ T+
Sbjct: 559 HTHASIIKSLGEFSSIQCPAKCAARIGQAFSETPSVVDLRDHDVEVVTHFPDI--TNRDG 616
Query: 558 TYCFSDGIGKISLSFARQVAQKCGLS-HTPSAFQIRYGGYKGVIAVDRN-SFRKLSLRRS 615
+ FSDG+GKIS S + + + + P+ FQ+R+GG KG++A+D K+ R S
Sbjct: 617 SRVFSDGVGKISESMMHIIWENIPMKKNAPTCFQVRWGGAKGMLALDMTLKGTKVCFRDS 676
Query: 616 MLKFESRN--RMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLI 673
M KFES + ++ S+ +P LNR++I +L +G F +Q +L L
Sbjct: 677 MTKFESDDVHQLEICDSGSKPIPLVLNRQMIKILEDMGTDRSWFMRLQSYRLQEL----- 731
Query: 674 NREAALDVLQKLNGVDSKNILVKMLL---------QGYEPNVEPYLSMMLLSHHENQLSD 724
R + +D++N+ + L G + + ++ ++ + +L
Sbjct: 732 -RSITASAYNTWHFLDAQNVGQAIKLGKFINFADKHGMDYRTDDFMRSVVEAVVLRELRL 790
Query: 725 LKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVK 784
LK + RI V G+ L G DETG L G+V + ++ D T
Sbjct: 791 LKHKARIPVKYGKTLFGIIDETGYLREGEVVISFGFSQTG-----------EDQPTPPQD 839
Query: 785 GK-VLVTKNPCLHPGDVRVLEAVYEMKLEE-KDYVDCIIFPQKGERPHPNECSGGDLDGD 842
G+ V+VT++P LHPGD+++ + V +++CIIF Q G+R P++ SGGDLDGD
Sbjct: 840 GQIVIVTRSPALHPGDIQIAKQVVPPPSHPLSHHINCIIFSQHGQRDLPSQLSGGDLDGD 899
Query: 843 IFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLV 902
I+ + WD D +P ET P DY ++ + V ++ +FF+D+M D LG I+T H++
Sbjct: 900 IYNVIWDGDAMPKETFDPADYPRVEAQDIGRRVVSADMAQFFIDFMKTDHLGVIATRHVI 959
Query: 903 HADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEF-PDFME--------- 952
AD+ D S +C LA LHS AVDF+K+G PAE+ + +F PDF+
Sbjct: 960 LADQLDDGTLSQECRTLAGLHSTAVDFSKSGIPAELKALPRANKFRPDFLSPGPITNYHD 1019
Query: 953 --------------------REDKPRYISF---GVLGKLYRATLDSIMQIRSNAIWSEKI 989
D PRY + VLG+LYR +I IW+E I
Sbjct: 1020 KGKITLEEYTISEEAEEEEEEGDGPRYGYYRSEKVLGQLYR-------EIDEEKIWNENI 1072
Query: 990 AEASYDHD 997
+ DH+
Sbjct: 1073 -RVAVDHN 1079
>gi|350629963|gb|EHA18336.1| hypothetical protein ASPNIDRAFT_176277 [Aspergillus niger ATCC 1015]
Length = 1152
Score = 292 bits (747), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 222/746 (29%), Positives = 365/746 (48%), Gaps = 76/746 (10%)
Query: 291 LVKCRPGFNLSHEVLFQLNSLVHNQKV---SLVAADAELIQIL----SGLSMETALMVLQ 343
L C +L +LFQL +L +N + ++ + ELIQ + +++ ++
Sbjct: 285 LATCTRNNSLPFGILFQLQALAYNAYLLPRTVQSLAQELIQAYKEDGAAHRRPISVLAMK 344
Query: 344 KLHKL---KSICYDPVSF-VKTQLHVLGRNCKS----IPLSSHKRLIDHNVMSCYRALVT 395
KL + S +P F V + L RN K + S N+ ++ ++T
Sbjct: 345 KLFDMIDWPSPHGNPTDFEVGALMMALKRNQKDALQDLAASGDMLGPSDNLTPIHKVMIT 404
Query: 396 PMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYR 455
P ++ GPELE N +++ F + F+RV F +E+ L N S+ +
Sbjct: 405 PTRVTLHGPELEPRNRILRRFPNHHDYFIRVQFCDENGQDLHFN-----------SRIHY 453
Query: 456 TKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNN---SVWMFASNDEVSAEDVRGWMGC 512
++SR +L GI I + Y FL +S S LR++ S ++ S + + +G
Sbjct: 454 DDVFSRFKHVLTHGIQIAGRTYSFLGWSHSSLRSHAFSSPFVDESGQFQTHFSIIKALGD 513
Query: 513 FNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSF 572
F+KI+S ++CAAR+GQ F+ + + + D+E+ +VTS FSDGIG +S +
Sbjct: 514 FSKIQSPARCAARIGQAFTDTPYAISLSEYDIEVSEMADVTSKDGKRVFSDGIGTLSWNV 573
Query: 573 AR----QVAQKCGLSHTPSAFQIRYGGYKGVIAVD-RNSFRKLSLRRSMLKFESRNRMLN 627
A+ + +K G P+ FQ+R GG KG++AVD R S ++ +R SM+KFE + L
Sbjct: 574 AKSIWHHIPEKKGF---PTCFQVRLGGAKGMLAVDGRLSGSQVKVRPSMIKFEGDMKDLE 630
Query: 628 VTKWS-ESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLN 686
+ + + M LNR++I +L +G D+ F +Q+ L L + + + +V K
Sbjct: 631 ICAMAAKPMVLVLNRQMIKILEDMGTPDDWFLTLQEAALTKLRSVTASAHNS-EVFIKRQ 689
Query: 687 GVDSKNILVKMLLQGYEPNV----EPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGC 742
V L ++ ++ ++ EP++ ++ + +L LK + RI V KG L G
Sbjct: 690 AVGDTIGLYRLFRHCHQRDLDYRKEPFIRSVVEAVVLKELRLLKHKARIPVFKGITLFGV 749
Query: 743 FDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRV 802
DETG+L QV+V T E +E + G VLVT++P LH GD++
Sbjct: 750 MDETGLLEADQVYV----TYETIEGRH---------APPPNAGMVLVTRSPALHDGDIQF 796
Query: 803 LEAVYEMKLEE-KDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPM 861
+ V + +CI+F KG R P++ SGGDLDGDIF + WD D P T P
Sbjct: 797 AQNVIPPDNHPLAELTNCIVFSSKGYRDLPSQLSGGDLDGDIFNVIWDTDAYPVRTFAPA 856
Query: 862 DYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLAT 921
DY + V +++ +FF+D+M D LG I+T H++ AD++ + C LA
Sbjct: 857 DYPRVSPVDIGRPVERDDMAQFFLDFMKTDHLGVIATRHMIMADQEAEGTSHPVCRKLAQ 916
Query: 922 LHSMAVDFAKTGAPAEMPLALKPKEF-PDFMEREDKPRYISFGVLGKLYRATLDSIMQIR 980
LHS AVDF+KTG P +M K K F PDFM + G + +++ +
Sbjct: 917 LHSTAVDFSKTGIPVQMSEIPKGKPFRPDFM---------APGPVARIHN---------K 958
Query: 981 SNAIWSEKIAEASYDHDLEVDGFEAF 1006
S+ E + +A+YD D +++ F +
Sbjct: 959 SDIELEEYVIQAAYDEDDDMEPFHKY 984
>gi|389747663|gb|EIM88841.1| RdRP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 890
Score = 292 bits (747), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 216/664 (32%), Positives = 328/664 (49%), Gaps = 75/664 (11%)
Query: 306 FQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLK---SICYDPVSFVKTQ 362
+ L SL+ + ++ D ++++I+ + + MVL+ L K + +I +D + + Q
Sbjct: 277 YLLESLLSHGTITFPEVD-DVVKIIHAYYKDNSTMVLEGLFKRRRRSTIEHDLGTVARLQ 335
Query: 363 LHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASD 422
++ S P M R LV P ++ + P++ETSN +++ F +A
Sbjct: 336 IN------NSAPTY---------CMMIRRCLVAPTRLILMPPQMETSNNLLRTFKDHADR 380
Query: 423 FMRVTFVEEDWSKLP----ANALSTSIQ--RGIFSKPYRTKIYSRILTILQDGIVIGDKH 476
F+RV F++E+ S L N + ++Q RG+F++ RT Y GI + +
Sbjct: 381 FLRVQFIQEE-SDLTVTRETNEIDDALQGGRGLFARVRRTLKY---------GIHVAGRK 430
Query: 477 YEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQT 536
Y FL F SQL++ WM A + S + + WMG +K R ++K AAR G S+S+
Sbjct: 431 YVFLCFGESQLKSKGCWMIAEKEGFSVQGILKWMGDLDKERVIAKHAARQGLCLSTSR-- 488
Query: 537 LVVPVQ-DVEMIPDVEVT-SDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYG 594
+P+ VE I D+ T S G Y F+DG+G S A A+ G+ SA Q+RYG
Sbjct: 489 -AIPLDLQVEFIHDITRTDSQGKEYVFTDGMGDCSQEVANVCARFMGIEGDVSAVQVRYG 547
Query: 595 -GYKGVIAVDRNSFRK-----LSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLS 648
G KGVI+V + + L +R SM+KF+S N LN K + P LNR++I L+
Sbjct: 548 TGIKGVISVSEDPLMRGNPYTLRVRDSMVKFKSSNPGLNALKVATYSPATLNRQVILLME 607
Query: 649 TLGVK-DEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVE 707
+LGV D + + + ++ + G EA+ Q+ S L K L G++ +
Sbjct: 608 SLGVSPDTLLDIFKTEKTKIQG-----LEASFG--QERLSRASAFPLEKALDSGFKD--D 658
Query: 708 PYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELES 767
P ++ ++ LSDLK + I +PK L+G D TG L G++F ++
Sbjct: 659 PLVASIVRLVKCRLLSDLKWKAWIEIPKSAFLMGVVDPTGTLQEGEIFCQI--------- 709
Query: 768 KDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGE 827
+ S+V G +NPCLHPGDVR ++AV M + + + I+F G
Sbjct: 710 ------QPPNSSPSVVVGDCTAYRNPCLHPGDVRSVKAVDYMSM--RHLRNVIVFSTLGH 761
Query: 828 RPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDY 887
RP PN GGD+DGD F + WD+ PMDYTG VT+++ KFFVD+
Sbjct: 762 RPLPNMMGGGDVDGDFFSLIWDDRFRLGSEYEPMDYTGPTPVKSILPVTVDQTKKFFVDF 821
Query: 888 MINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEF 947
+ ND LGA+ H+ AD CL LA L S AVDF KTG P K E+
Sbjct: 822 IRNDLLGAVCNTHMALADE--HGPYHDDCLKLAALASQAVDFVKTGVPVSHNDIPKVDEY 879
Query: 948 PDFM 951
PDFM
Sbjct: 880 PDFM 883
>gi|240276859|gb|EER40370.1| RNA-dependent RNA polymerase [Ajellomyces capsulatus H143]
Length = 1240
Score = 290 bits (741), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 244/819 (29%), Positives = 382/819 (46%), Gaps = 105/819 (12%)
Query: 299 NLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSIC------ 352
N+ + V FQL LV N +S A + ++ + L +E +V++ L +L S
Sbjct: 320 NMPYRVRFQLQKLVWNGDISPAKAISFASRVRAALVIEDLDIVVRALMRLSSDVKWPSPD 379
Query: 353 -----YDPVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELE 407
D + V+ + L + ++ R + N +S +RA +TP Y GP E
Sbjct: 380 VEASEVDVPALVEVFKNALESTAREREMTRSNRPMHPNHISIHRAQITPCGTYLDGPHAE 439
Query: 408 TSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQ 467
T N V+++++ + F+RV FV+E + + ++ IF SR T+L+
Sbjct: 440 TKNRVLRHYSSHVDHFLRVEFVDETGDPVRYDPRASIDM--IFE--------SRFKTVLK 489
Query: 468 DGIVIGDKHYEFLAFSASQLRNNSVWMFAS--NDEV--SAEDVRGWMGCFNKIRSVSKCA 523
GI I + +EFL FS S LR+ + W A D + +A + +G F+ I+S +K A
Sbjct: 490 SGINIAGRKFEFLGFSHSSLRSQTCWFVAPFYKDRILYNASTIIQNLGRFDHIQSPAKQA 549
Query: 524 ARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLS 583
AR+GQ FS + ++ + + + + DVE N FSDG+G IS S + + L
Sbjct: 550 ARIGQTFSDTLTSIPISDKYISIGKDVE----RNGRVFSDGVGTISPSVMYMIWKDHSLR 605
Query: 584 HT--PSAFQIRYGGYKGVIAVD-RNSFRKLSLRRSMLKFESRN--RMLNVT---KWSESM 635
P+ FQIR G KG+I++D R + L LR SM+KF N N+ + +
Sbjct: 606 TVVKPTVFQIRLAGAKGMISLDSRKKGKSLVLRPSMIKFHLPNSYNAFNIEICGSGLKPL 665
Query: 636 PCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNI-- 693
P FLN ++I +L LGV D VF +Q ++ L + A L+ N S +
Sbjct: 666 PFFLNAQLIKILEDLGVDDSVFLRLQADEISRLRATATSTAKAARFLEDTNIAKSVGLPW 725
Query: 694 LVKMLLQ-GYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYG 752
L+ +L G + + +L ++ +L DLK R RI VP L G DETGIL G
Sbjct: 726 LINILEGFGLRHSNDEFLRRVMELAVLIKLRDLKYRARIRVPNAVTLFGIMDETGILKEG 785
Query: 753 QVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAV-YEMKL 811
+VF L K + +V +V+VT++P +HPGDV++ AV
Sbjct: 786 EVFC------TSLSDKGV--------REVLVNPRVVVTRSPAMHPGDVQIARAVDVPADS 831
Query: 812 EEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIM 871
+ +CI F Q G R P+ SGGDLDGD++ + +DN L+P P +Y + +++
Sbjct: 832 PLRQLHNCIAFSQHGHRDLPSMLSGGDLDGDLYNVIFDNTLLPKRIARPAEYPRVQEKVL 891
Query: 872 DHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAK 931
V E+I FFV +M D LG I+T H ADR P +CL LA LHS AVDF+K
Sbjct: 892 GRAVVREDIIDFFVTFMQQDQLGRIATIHQALADRRPLGTFDPECLLLAELHSTAVDFSK 951
Query: 932 TGAPAEMPLALK-PKEFPDFMEREDKPR-------------------------------Y 959
TG P ++ K P PDF + R Y
Sbjct: 952 TGVPVDLARIPKFPSCRPDFQAPSPRIRIAENLSLLEGDMDAVQDGGDEDDDERPAVRFY 1011
Query: 960 ISFGVLGKLYRAT--------LDSIMQIRSNAIWSEKIAEASYDH-DLEVDGF--EAFLG 1008
S +LGKLYR+ S M++ S A+ + + + ++ E +GF + +
Sbjct: 1012 KSENILGKLYRSIDEVKFLQHRQSAMELPS-AMGAPSVLQGVWEFVQREAEGFLWDHHIE 1070
Query: 1009 VAESHKEMYEEEMNALMNYYGAS------TEDEILTGNL 1041
A +++YE+ + +M Y ++ TE E+ G +
Sbjct: 1071 HALDIRQIYEDNLLEIMARYSSTPWKSSITEYEVFVGTI 1109
>gi|392886217|ref|NP_001250555.1| Protein RRF-1, isoform a [Caenorhabditis elegans]
gi|8886070|gb|AAF80368.1|AF159144_1 RRF-1 [Caenorhabditis elegans]
gi|14530419|emb|CAC42290.1| Protein RRF-1, isoform a [Caenorhabditis elegans]
Length = 1601
Score = 290 bits (741), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 232/841 (27%), Positives = 400/841 (47%), Gaps = 132/841 (15%)
Query: 391 RALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIF 450
+ + TP ++ + PE N V++ F K + +RVTF +++ K+ +N + R
Sbjct: 466 KVIFTPTRVIYIAPETIMGNRVLRKFDKDGTRVLRVTFRDDNNKKMRSNVTGKLLDRT-- 523
Query: 451 SKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMF--------------- 495
+ Y L+ G+ I ++ Y FL S SQ+R+N +
Sbjct: 524 ANKY-----------LEHGVRIANREYGFLGCSNSQMRDNGAYFMMRFTDKQLDRFYKCN 572
Query: 496 --ASNDEVSA--EDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVE 551
ASN ++VR +G F++I +V K AR+GQ F+ S+ T V +D + +
Sbjct: 573 PTASNINFKPKIDEVRFQLGRFSEIENVPKLMARLGQCFTQSRLTGVGLGRD-DYCSTYD 631
Query: 552 VT----SDGNTYCFSDGIGKISLSFARQVAQKCGLSHT-PSAFQIRYGGYKGVIAVDR-- 604
+T ++G+ Y FSDG+G +S FA++V+Q PS FQIR+ G KGVIA++
Sbjct: 632 LTGGRATNGSEYTFSDGVGMMSYQFAQEVSQAMQFGKAVPSCFQIRFRGNKGVIAIEPFL 691
Query: 605 NSFRKLSL--------------RRSMLKFESR---NRMLNVTKWSESMPCFLNREIISLL 647
+ RK +L R S +KF+++ + + K+S ++ LN+ I++L
Sbjct: 692 DEIRKWALVNGVTSMKMAKCLFRPSQIKFQAKAISGDQIEMVKFSSAVLVALNKPFINIL 751
Query: 648 STLGVKDEV---------FEAMQQQQLILLGKMLINREAALDVLQKL-NGVDSKNILVKM 697
+ + E + +Q++ K + + L++ +D N+
Sbjct: 752 DQVSEMQSLDCHKRITSRIEELMDRQILSFAKQMNEETFCRNKLKEFPRRIDIDNLRT-- 809
Query: 698 LLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPK--GRLLIGCFDETGILNYGQVF 755
+ G+ + EP+ ++ + + ++ + +I +P GR ++G DETG L YGQ+F
Sbjct: 810 -MWGFTLSSEPFFRSLIKASIKFSITKQLCKEQIQIPSELGRSMLGVVDETGRLQYGQIF 868
Query: 756 VRVTMT-REELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEK 814
V+ T +++L +D + ++V + IV G VL+TKNPC+ PGDVR+ EAV +L
Sbjct: 869 VQYTKNYKKKLPPRDSN--NKVHG-SEIVTGTVLLTKNPCIVPGDVRIFEAVDIPELHH- 924
Query: 815 DYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRI-MDH 873
D ++FPQ G RPHP+E +G DLDGD + + WD +L+ E P D+ + ++ D
Sbjct: 925 -MCDVVVFPQHGPRPHPDEMAGSDLDGDEYSVIWDQELLLERNEEPFDFAVEKIKVPYDR 983
Query: 874 DVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTG 933
+ + +F+V Y+ D++G IS +HL ++D+ +R C+ LA + AVDF K+G
Sbjct: 984 EKLDVLMREFYVTYLKLDSVGQISNSHLHNSDQYGLNSRV--CMDLAKKNCQAVDFTKSG 1041
Query: 934 APAEMPLALK---------------PKEFPDF-MEREDKPRYISFGVLGKLYR--ATLDS 975
P + PL K P+ PDF M E P Y+S + GKL+R +D+
Sbjct: 1042 QPPD-PLETKWRADPVTFEVIPPENPERIPDFHMGNERSPMYVSPRLCGKLFREFQAIDN 1100
Query: 976 IMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDE 1035
+++I ++ D + V GFE ++ A+ Y ++ ++M YG +E E
Sbjct: 1101 VIKISEE---RDEQYNIELDETIFVTGFERYMESAQKQLSSYNGQLRSIMENYGIRSEGE 1157
Query: 1036 ILTG---NLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWF-----GSSCK----- 1082
I++G +RNR S +D+ + + I +L + +E F G + K
Sbjct: 1158 IMSGCIVEMRNRISDKDQDDMSFYNTNQMIETKMTSLVCKFRETFFEEFGGFTVKCTLLP 1217
Query: 1083 ----------------ENEHPQLASAWYHVTYSPSYCKERMALLSFPWIVGDILLNIKSV 1126
+ E + A AWY Y + + LSF WI D++ +K
Sbjct: 1218 NAYDNGNCLNYRCEDPDQEVRKKAVAWYRACYECAQSTREVRKLSFAWIAYDVIAKVKET 1277
Query: 1127 N 1127
N
Sbjct: 1278 N 1278
>gi|392886219|ref|NP_001250556.1| Protein RRF-1, isoform b [Caenorhabditis elegans]
gi|345107385|emb|CCD31066.1| Protein RRF-1, isoform b [Caenorhabditis elegans]
Length = 1520
Score = 290 bits (741), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 232/841 (27%), Positives = 400/841 (47%), Gaps = 132/841 (15%)
Query: 391 RALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIF 450
+ + TP ++ + PE N V++ F K + +RVTF +++ K+ +N + R
Sbjct: 385 KVIFTPTRVIYIAPETIMGNRVLRKFDKDGTRVLRVTFRDDNNKKMRSNVTGKLLDRT-- 442
Query: 451 SKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMF--------------- 495
+ Y L+ G+ I ++ Y FL S SQ+R+N +
Sbjct: 443 ANKY-----------LEHGVRIANREYGFLGCSNSQMRDNGAYFMMRFTDKQLDRFYKCN 491
Query: 496 --ASNDEVSA--EDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVE 551
ASN ++VR +G F++I +V K AR+GQ F+ S+ T V +D + +
Sbjct: 492 PTASNINFKPKIDEVRFQLGRFSEIENVPKLMARLGQCFTQSRLTGVGLGRD-DYCSTYD 550
Query: 552 VT----SDGNTYCFSDGIGKISLSFARQVAQKCGLSHT-PSAFQIRYGGYKGVIAVDR-- 604
+T ++G+ Y FSDG+G +S FA++V+Q PS FQIR+ G KGVIA++
Sbjct: 551 LTGGRATNGSEYTFSDGVGMMSYQFAQEVSQAMQFGKAVPSCFQIRFRGNKGVIAIEPFL 610
Query: 605 NSFRKLSL--------------RRSMLKFESR---NRMLNVTKWSESMPCFLNREIISLL 647
+ RK +L R S +KF+++ + + K+S ++ LN+ I++L
Sbjct: 611 DEIRKWALVNGVTSMKMAKCLFRPSQIKFQAKAISGDQIEMVKFSSAVLVALNKPFINIL 670
Query: 648 STLGVKDEV---------FEAMQQQQLILLGKMLINREAALDVLQKL-NGVDSKNILVKM 697
+ + E + +Q++ K + + L++ +D N+
Sbjct: 671 DQVSEMQSLDCHKRITSRIEELMDRQILSFAKQMNEETFCRNKLKEFPRRIDIDNLRT-- 728
Query: 698 LLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPK--GRLLIGCFDETGILNYGQVF 755
+ G+ + EP+ ++ + + ++ + +I +P GR ++G DETG L YGQ+F
Sbjct: 729 -MWGFTLSSEPFFRSLIKASIKFSITKQLCKEQIQIPSELGRSMLGVVDETGRLQYGQIF 787
Query: 756 VRVTMT-REELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEK 814
V+ T +++L +D + ++V + IV G VL+TKNPC+ PGDVR+ EAV +L
Sbjct: 788 VQYTKNYKKKLPPRDSN--NKVHG-SEIVTGTVLLTKNPCIVPGDVRIFEAVDIPELHH- 843
Query: 815 DYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRI-MDH 873
D ++FPQ G RPHP+E +G DLDGD + + WD +L+ E P D+ + ++ D
Sbjct: 844 -MCDVVVFPQHGPRPHPDEMAGSDLDGDEYSVIWDQELLLERNEEPFDFAVEKIKVPYDR 902
Query: 874 DVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTG 933
+ + +F+V Y+ D++G IS +HL ++D+ +R C+ LA + AVDF K+G
Sbjct: 903 EKLDVLMREFYVTYLKLDSVGQISNSHLHNSDQYGLNSRV--CMDLAKKNCQAVDFTKSG 960
Query: 934 APAEMPLALK---------------PKEFPDF-MEREDKPRYISFGVLGKLYR--ATLDS 975
P + PL K P+ PDF M E P Y+S + GKL+R +D+
Sbjct: 961 QPPD-PLETKWRADPVTFEVIPPENPERIPDFHMGNERSPMYVSPRLCGKLFREFQAIDN 1019
Query: 976 IMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDE 1035
+++I ++ D + V GFE ++ A+ Y ++ ++M YG +E E
Sbjct: 1020 VIKISEE---RDEQYNIELDETIFVTGFERYMESAQKQLSSYNGQLRSIMENYGIRSEGE 1076
Query: 1036 ILTG---NLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWF-----GSSCK----- 1082
I++G +RNR S +D+ + + I +L + +E F G + K
Sbjct: 1077 IMSGCIVEMRNRISDKDQDDMSFYNTNQMIETKMTSLVCKFRETFFEEFGGFTVKCTLLP 1136
Query: 1083 ----------------ENEHPQLASAWYHVTYSPSYCKERMALLSFPWIVGDILLNIKSV 1126
+ E + A AWY Y + + LSF WI D++ +K
Sbjct: 1137 NAYDNGNCLNYRCEDPDQEVRKKAVAWYRACYECAQSTREVRKLSFAWIAYDVIAKVKET 1196
Query: 1127 N 1127
N
Sbjct: 1197 N 1197
>gi|268561564|ref|XP_002646475.1| Hypothetical protein CBG19448 [Caenorhabditis briggsae]
Length = 1606
Score = 289 bits (740), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 246/903 (27%), Positives = 417/903 (46%), Gaps = 142/903 (15%)
Query: 334 SMETALMVLQKLHKLKSI--CYDPVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYR 391
++E + ++ ++ SI C+D + + ++ ++ NC S + I +
Sbjct: 417 ALEDLIHLVDGRKRIGSIIKCFDKICQKRQRMQLI--NCLS------ESEIRSGFQRVRK 468
Query: 392 ALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFS 451
+ TP ++ + PE N V++ F K + +R+TF +++ +++ AN ++
Sbjct: 469 VIFTPTRVIYISPETIMGNRVLRKFDKDGTRVIRITFRDDNNNQMRANDTGDLLEMTANK 528
Query: 452 KPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAE------- 504
L +GI I ++ + FL S SQ+R+N + A + E
Sbjct: 529 -------------FLGEGIRIANREFGFLGCSNSQMRDNGAYFMAKYSQSQLEKFLRTRP 575
Query: 505 -------------DVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLV-VPVQDVEMIPDV 550
+VR +G F+K+ ++ K ARMGQ F+ S+ T V + D IPD
Sbjct: 576 NEAQLKAFKPRIMEVRKHLGKFDKLENIPKLMARMGQCFTQSRLTGVELNRSDYIRIPDF 635
Query: 551 EVTSD--GNTYCFSDGIGKISLSFARQVAQKCGLSHT-PSAFQIRYGGYKGVIAVDR--- 604
E + G Y FSDG+G +S FA++VA + ++ PS+FQIR+ G KG+IA+D
Sbjct: 636 EGGKNLAGKPYTFSDGVGIMSYRFAQKVAHAMQMGNSVPSSFQIRFRGMKGMIAIDPYMD 695
Query: 605 ----------------NSFRKLSLRRSMLKFESRN---RMLNVTKWSESMPCFLNREIIS 645
N K + R S +KFE+++ + + K+S + LN+ I+
Sbjct: 696 LIHQWNVSYDIPYQVPNLELKCAFRPSQIKFEAKSLPGDQIEMVKYSAPVMVALNKPFIN 755
Query: 646 LLSTLGVKDEV---------FEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVK 696
+L + + E + +Q++ + + + + L++ + L
Sbjct: 756 ILDQVSEMQSLECHKRVTGRVEELMDRQILSFARQMNDETYCRNRLKEFPRRIDIDFLRP 815
Query: 697 MLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPK--GRLLIGCFDETGILNYGQV 754
M G+ + EP+ ++ + + ++ + +I +PK GR ++G DETG L YGQ+
Sbjct: 816 MW--GFTLSSEPFFRSLIKASIKFSITKQLRKEQIQIPKELGRSMLGVVDETGQLQYGQI 873
Query: 755 FVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEK 814
FV+ T + D K IV G VLVTKNPC+ GDVRV EAV +L
Sbjct: 874 FVQYTQNAAKKLPMRGPNMTVPDAK--IVTGTVLVTKNPCIVTGDVRVFEAVDIPELHH- 930
Query: 815 DYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIM--D 872
D ++FPQ G RPHP+E +G DLDGD + I WD L+ E P D++ + + D
Sbjct: 931 -MCDVVVFPQHGPRPHPDEMAGSDLDGDEYSIIWDQQLLLDRNEDPFDFSVEKKDPVPFD 989
Query: 873 HDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKT 932
D + + F+V Y+ D++G IS HL ++D+ S+ C++LA +S AVDF K+
Sbjct: 990 FDQIDDLMRDFYVKYLKLDSVGTISNNHLHNSDQ--YGLTSTVCMNLAKKNSQAVDFTKS 1047
Query: 933 GAPAEMPLALK-----------PKE----FPDF-MEREDKPRYISFGVLGKLYR--ATLD 974
G P PL + P E PD+ M E P Y+S + G+L+R +D
Sbjct: 1048 GDPP-APLTREWGKDPETGENIPPEGAERIPDYHMANERVPVYVSPRLCGRLFREFQAID 1106
Query: 975 SIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTED 1034
++++I ++ E D L + G+EA++ A Y ++ A+M YG TE
Sbjct: 1107 NVIKISEE---RDEQFEVQIDETLMIQGYEAYMEGARKDLANYNGQLRAIMETYGIRTEG 1163
Query: 1035 EILTG---NLRNRASYLQRDNRRYGDMKDRIL------LSAKNLQNEAKEWFG--SSCKE 1083
EI++ ++RNR S +D++ ++++ L + +N KE+ G ++C E
Sbjct: 1164 EIMSDCILDMRNRISDRDQDDKMSFYNTNQMIETRTTALFCRFRENFFKEFHGFQAACTE 1223
Query: 1084 NEHP-------------------QLASAWYHVTYSPSYCKERMALLSFPWIVGDILLNIK 1124
++ Q A AWY Y + LSF WIV D+L +K
Sbjct: 1224 IQNSNDSTNPLNFRCDGPSVPMLQKAVAWYRACYEFAQSSRETRKLSFAWIVFDVLAKVK 1283
Query: 1125 SVN 1127
N
Sbjct: 1284 EHN 1286
>gi|115436872|ref|XP_001217666.1| predicted protein [Aspergillus terreus NIH2624]
gi|114188481|gb|EAU30181.1| predicted protein [Aspergillus terreus NIH2624]
Length = 1039
Score = 289 bits (739), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 238/764 (31%), Positives = 366/764 (47%), Gaps = 122/764 (15%)
Query: 299 NLSHEVLFQLNSLVHN---QKVSLVAADAELIQI--------LSGLSMETALMVLQKLHK 347
+L VL+QL +LV+N ++ ++L I L+ +S + +L +H
Sbjct: 283 DLPFGVLYQLQALVYNAYLHPTTVQILGSKLCAISQDRRQRGLAPISADAVRTLLNTVHW 342
Query: 348 LKSI----CYDPVSFVKT-------QLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTP 396
+ P S + T ++ + S LSS LI +R V+P
Sbjct: 343 ALPFDNPEVFQPDSLLATLRLDREAKMERTTQKSVSADLSSDHVLI-------HRVSVSP 395
Query: 397 MKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRT 456
+I GPE E N V++ F ++ + F+RV F +E S L N K
Sbjct: 396 ARITFHGPEREPQNRVIRKFPRHHAYFIRVQFCDERGSDLFFNP-----------KHDYE 444
Query: 457 KIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWM---FASND---EVSAEDVRGWM 510
+I+ R T+L GI I + Y FL FS S LR++SVW F D + S+ ++ +
Sbjct: 445 QIFQRFRTVLTLGIQIAGRTYTFLGFSHSSLRSHSVWFSSPFIDGDGSLQTSSSIIKA-L 503
Query: 511 GCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISL 570
G F+ I S ++CAAR+GQ F+ + TL PVQ+V + ++TS + FSDGIG ISL
Sbjct: 504 GNFSGITSPARCAARIGQAFTETPFTL--PVQNVVVEYIEDITSSDESRVFSDGIGTISL 561
Query: 571 SFARQV----AQKCGLSHTPSAFQIRYGGYKGVIAVD-RNSFRKLSLRRSMLKFESRN-R 624
++ QK G TP+ FQ+R GG KG++++D R + +R SM+KF + + R
Sbjct: 562 EVVERIWKGIPQKKG---TPTCFQVRLGGAKGMLSLDSRLEGSVIRIRPSMVKFSTDDMR 618
Query: 625 MLNVTKW-SESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQ 683
L + SE P LNR+I+ +L +GV D+ F +Q +L L + + + L+
Sbjct: 619 DLGICGMASEPYPLVLNRQIVKILEDIGVPDDWFFGLQNDRLRQLQLISSSADKTATFLK 678
Query: 684 KLNGVDSKNILVKMLLQGYEPNVE----PYLSMMLLSHHENQLSDLKSRCRIYVPKGRLL 739
DS L K+ Y +++ P+L ++ + +L LK + RI VP+G L
Sbjct: 679 DAKIADSIG-LYKLFRWCYWMDLDYREDPFLRSIVEAMILRELRLLKHKSRIPVPQGMTL 737
Query: 740 IGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGD 799
G DETG L +VF+ + G VLVT++P L+ GD
Sbjct: 738 YGIIDETGYLKENEVFITFDTISGLYAAPPG-------------PGPVLVTRSPALYDGD 784
Query: 800 VRVLEAVYEMKLEE-KDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETE 858
++V V + +CIIF Q+G R P++ SGGDLDGD++ + WD + T
Sbjct: 785 IQVARNVVPPPDHPLARHKNCIIFSQQGARDLPSQLSGGDLDGDLYHVIWDPIVAKVHTS 844
Query: 859 PPMDYTGRRSRIMDHD----VTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSS 914
PP +Y +R++ HD VT +++ FFV++M D +G I+T H++ AD++P+ +S
Sbjct: 845 PPANY----ARVVPHDIGRVVTTKDMAYFFVEFMKTDCVGIIATRHMILADQEPEGTHAS 900
Query: 915 KCLHLATLHSMAVDFAKTGAPAEMPLALKPKEF-PDFMER-------------------- 953
C LA LHS AVD++K+G P +M F PDFM
Sbjct: 901 GCKLLAELHSTAVDYSKSGVPVDMAKIPSTGRFRPDFMAPGPLAQVYSKSKITLTELSSH 960
Query: 954 ----EDKPRYISF----GVLGKLYRATLDSIMQIRSNAIWSEKI 989
ED P +I + +LGKLYRA I IW E+I
Sbjct: 961 AAYDEDGPSHILYYKSDRILGKLYRA-------IDEKRIWHERI 997
>gi|239613137|gb|EEQ90124.1| RNA-dependent RNA polymerase [Ajellomyces dermatitidis ER-3]
Length = 1154
Score = 289 bits (739), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 247/822 (30%), Positives = 387/822 (47%), Gaps = 112/822 (13%)
Query: 300 LSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLK------SICY 353
L ++V FQL LV N +S A + ++ + L E +V+Q L +L+ S
Sbjct: 236 LPYQVRFQLQKLVWNGDISPAKAISFASRVQAALVTENLDVVVQALMRLRQNIKWPSPDV 295
Query: 354 DPVSFVKTQLHVLGRNCKSIPLSSHK-----RLIDHNVMSCYRALVTPMKIYCLGPELET 408
+P + L RN + HK R + N +S +R VTP IY GP +E+
Sbjct: 296 EPSEVDVSALVATFRNALEAAVREHKMASTNRHTNPNHVSIHRVQVTPCGIYLDGPYMES 355
Query: 409 SNYVVKNFAKYASDFMRVTFVEEDWSKL---PANALSTSIQRGIFSKPYRTKIYSRILTI 465
N V++ +A + F+RV F++E + P ++ Q+ R +
Sbjct: 356 KNRVLRRYANHVDHFLRVEFMDESGDPVRYDPRASIDLIFQQ-------------RFKGV 402
Query: 466 LQDGIVIGDKHYEFLAFSASQLRNNSVWM----FASNDEVSAEDVRGWMGCFNKIRSVSK 521
L++GI I + +EFL FS S LR+ + W +A +A + +G F+ I S +K
Sbjct: 403 LKNGINIAGRKFEFLGFSHSSLRSQTCWFVAPFYADGILYNATTIIQNLGRFDHINSPAK 462
Query: 522 CAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCG 581
AAR+GQ FS + ++ + + + ++ DV N FSDG+G IS S + +
Sbjct: 463 QAARIGQTFSETLTSIPISEEIISVVQDVR----RNDRVFSDGVGTISPSVMYMIWKDYS 518
Query: 582 LSHT--PSAFQIRYGGYKGVIAVD-RNSFRKLSLRRSMLKFESRNRM--LNVT---KWSE 633
L P+ FQIR G KG++++D RN L LR SM+KF N+
Sbjct: 519 LRTMVKPTVFQIRIAGAKGMVSLDSRNKGESLVLRPSMIKFPVTTSFNAYNIEICGSGIR 578
Query: 634 SMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNI 693
S+P FLN ++I +L LGV VF +Q+ +++ L + A L+ N S +
Sbjct: 579 SLPFFLNAQLIKILEDLGVDGNVFLKLQRDEILRLRATATSTTQAAKFLEDTNIAKSVGL 638
Query: 694 --LVKML-LQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILN 750
L+ +L G + + +L ++ +L DLK R RI VPK L G DETG L
Sbjct: 639 PWLISILEALGLRHSDDEFLRRVMELVVLIKLRDLKYRARIRVPKAVTLFGIMDETGYLK 698
Query: 751 YGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAV-YEM 809
G++F L K + + ++ KV+VT++P +HPGDV++ +AV
Sbjct: 699 EGEIFC------TSLSDKGR--------REVLLNPKVVVTRSPAMHPGDVQIAKAVDVPA 744
Query: 810 KLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSR 869
+ +CI F Q G+R P+ SGGDLDGD++ + +++ LIP PP Y + +
Sbjct: 745 DSPLRQLHNCIAFSQHGDRDLPSMLSGGDLDGDLYNVIFEDTLIPRVISPPAQYPRVQEK 804
Query: 870 IMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDF 929
++D V ++I FFV +M D LG I+T H AD+ +CL LA LHS AVDF
Sbjct: 805 VLDRPVVRDDIIDFFVTFMQQDQLGRIATVHQTIADQKALGTFDPQCLLLAELHSTAVDF 864
Query: 930 AKTGAPAEMPLALK-PKEFPDF---------------MERED--------------KPR- 958
+K+G P ++ K P+ PDF +E D +P
Sbjct: 865 SKSGVPVDLARIPKFPRYRPDFQAPGPRVRIAESLSLLEEHDQMTVLDDDDEEEDERPTA 924
Query: 959 --YISFGVLGKLYRATLDSI--MQIRSNAI-WSEKIAEASYDHDL------EVDGF--EA 1005
Y S +LGKLYRA +D + +Q R NAI S +A S + E GF +
Sbjct: 925 RYYKSEKILGKLYRA-IDEVEFLQHRQNAIERSMAMAAPSVLKGVWAFVQSETVGFLWDH 983
Query: 1006 FLGVAESHKEMYEEEMNALMNYYGAS------TEDEILTGNL 1041
+ A +++YE+ + +M Y ++ TE E+ G +
Sbjct: 984 HVENALEIRQIYEDNLLEIMARYSSTPWKSSITEYEVFVGTI 1025
>gi|452004258|gb|EMD96714.1| hypothetical protein COCHEDRAFT_106396 [Cochliobolus heterostrophus
C5]
Length = 931
Score = 289 bits (739), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 231/747 (30%), Positives = 361/747 (48%), Gaps = 99/747 (13%)
Query: 369 NCKSIPLSSH----KRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFM 424
+CK + L+S K+ H++ Y+A VTP I GP+ + SN V++ ++ FM
Sbjct: 111 DCKHMELASRDLNGKQKKHHHLALTYKATVTPTGILLRGPDWDVSNRVLRKYSTRTEYFM 170
Query: 425 RVTFVEEDWSKLPANALSTSIQRGIF--SKPYRTKIYSRILTILQDGIVIGDKHYEFLAF 482
RV F +ED LS +F S+ + ++Y R +LQ+GI + + ++FL F
Sbjct: 171 RVFFADED-------GLS------VFHDSRASQNQVYERFRNVLQNGISVAGRTFQFLGF 217
Query: 483 SASQLRNNSVWMFA----SNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLV 538
S + LRN+ W A V A +V +G F+ I +KCAAR+GQ FS +
Sbjct: 218 SHASLRNHQAWFMAPFEMDGSLVRARNVIQDLGDFSHIHCSAKCAARIGQAFSDT--IFS 275
Query: 539 VPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCG---LSHTPSAFQIRYGG 595
VPV + + +V+ + N+ FSDG G ISL R V + P+ QIRY G
Sbjct: 276 VPVPETAYVTEVKDDVERNSRTFSDGCGTISLELLRTVWRALPPERRQQRPTVLQIRYRG 335
Query: 596 YKGVIAVDRN-SFRKLSLRRSMLKFESRN--RMLNVTKWS-ESMPCFLNREIISLLSTLG 651
KGV+++D + S ++L +R+SM K+ ++ R L + + + + FLN + I +L LG
Sbjct: 336 AKGVLSLDASLSDQQLHVRKSMTKYIAKETWRDLELCGAAYKPLSVFLNHQFIKILEDLG 395
Query: 652 VKDEVFEAMQQQQ---LILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEP 708
V E F +Q + L L+ + +N + L + M G + +
Sbjct: 396 VPAENFLHVQDEAVNTLKLITEHPLNAASFLAYSHSCIFAKVPQLFEMMHRIGLPFHADR 455
Query: 709 YLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESK 768
+L+ ++ + L LK R RI + KG LL G DET L YG+V++ ++
Sbjct: 456 FLTDIVEVAAMSSLRSLKYRARIPIEKGYLLYGVMDETNTLKYGEVYI---------ATQ 506
Query: 769 DQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEE-KDYVDCIIFPQKGE 827
D ++ ++ +V +++VT+ P LHPGD+++++AV + +CI+F Q+G
Sbjct: 507 DHDKTGKLK-RSILVGNQIIVTRAPALHPGDIQLVDAVDVTDDSPLRALHNCIVFSQQGP 565
Query: 828 RPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDY 887
R P++ SGGDLDGD+F I +D LIP T P +Y ++ + V +I FF++Y
Sbjct: 566 RDLPSQLSGGDLDGDLFHIIYDQRLIPAYTVEPAEYDKAPAKDLGRPVEANDIVGFFIEY 625
Query: 888 MINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEF 947
M D LG IS H + AD P+ R CL LA L S AVDF+KTG PA+M K +
Sbjct: 626 MKMDRLGQISNKHKIRADVKPNGTRHPDCLTLAKLASDAVDFSKTGVPADMSRIPKGIDH 685
Query: 948 --PDFME--------------------------------REDKPR---YISFGVLGKLYR 970
PDFM DK R Y S +LG LYR
Sbjct: 686 FRPDFMAPGSHLVINELGAAELAELEEDDIDDPDSISVLDADKGRIRYYRSDKILGILYR 745
Query: 971 ATLDSIM--QIRSN-AIWSEKIAEASYDHDL------EVDG--FEAFLGVAESHKEMYEE 1019
A + +++S+ I+ ++ + S L E G +E AE +E YEE
Sbjct: 746 AIDEKKFFDKMKSDYEIFRQRWGKESLVDKLKRYIIRETQGLQWEHHWDFAEQLRETYEE 805
Query: 1020 EMNALMNYYGAS-----TEDEILTGNL 1041
M +M+ + TE E+ +GN+
Sbjct: 806 NMLEIMDTLRPTRGQPLTELEVFSGNI 832
>gi|261191013|ref|XP_002621915.1| RNA dependent RNA polymerase [Ajellomyces dermatitidis SLH14081]
gi|239590959|gb|EEQ73540.1| RNA dependent RNA polymerase [Ajellomyces dermatitidis SLH14081]
Length = 1239
Score = 288 bits (738), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 247/822 (30%), Positives = 387/822 (47%), Gaps = 112/822 (13%)
Query: 300 LSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLK------SICY 353
L ++V FQL LV N +S A + ++ + L E +V+Q L +L+ S
Sbjct: 321 LPYQVRFQLQKLVWNGDISPAKAISFASRVQAALVTENLDVVVQALMRLRQNIKWPSPDV 380
Query: 354 DPVSFVKTQLHVLGRNCKSIPLSSHK-----RLIDHNVMSCYRALVTPMKIYCLGPELET 408
+P + L RN + HK R + N +S +R VTP IY GP +E+
Sbjct: 381 EPSEVDVSALVATFRNALEAAVREHKMASTNRHTNPNHVSIHRVQVTPCGIYLDGPYMES 440
Query: 409 SNYVVKNFAKYASDFMRVTFVEEDWSKL---PANALSTSIQRGIFSKPYRTKIYSRILTI 465
N V++ +A + F+RV F++E + P ++ Q+ R +
Sbjct: 441 KNRVLRRYANHVDHFLRVEFMDESGDPVRYDPRASIDLIFQQ-------------RFKGV 487
Query: 466 LQDGIVIGDKHYEFLAFSASQLRNNSVWM----FASNDEVSAEDVRGWMGCFNKIRSVSK 521
L++GI I + +EFL FS S LR+ + W +A +A + +G F+ I S +K
Sbjct: 488 LKNGINIAGRKFEFLGFSHSSLRSQTCWFVAPFYADGILYNATTIIQNLGRFDHINSPAK 547
Query: 522 CAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCG 581
AAR+GQ FS + ++ + + + ++ DV+ N FSDG+G IS S + +
Sbjct: 548 QAARIGQTFSETLTSIPISEEIISVVQDVK----RNDRVFSDGVGTISPSVMYMIWKDYS 603
Query: 582 LSHT--PSAFQIRYGGYKGVIAVD-RNSFRKLSLRRSMLKFESRNRM--LNVT---KWSE 633
L P+ FQIR G KG++++D RN L LR SM+KF N+
Sbjct: 604 LRTMVKPTVFQIRIAGAKGMVSLDSRNKGESLVLRPSMIKFPVTTSFNAYNIEICGSGIR 663
Query: 634 SMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNI 693
S+P FLN ++I +L LGV VF +Q+ +++ L + A L+ N S +
Sbjct: 664 SLPFFLNAQLIKILEDLGVDGNVFLKLQRDEILRLRATATSTTQAAKFLEDTNIAKSVGL 723
Query: 694 --LVKML-LQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILN 750
L+ +L G + + +L ++ +L DLK R RI VPK L G DETG L
Sbjct: 724 PWLISILEALGLRHSDDEFLRRVMELVVLIKLRDLKYRARIRVPKAVTLFGIMDETGYLK 783
Query: 751 YGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAV-YEM 809
G++F L K + + ++ KV+VT++P +HPGDV++ +AV
Sbjct: 784 EGEIFC------TSLSDKGR--------REVLLNPKVVVTRSPAMHPGDVQIAKAVDVPA 829
Query: 810 KLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSR 869
+ +CI F Q G+R P+ SGGDLDGD++ + + + LIP PP Y + +
Sbjct: 830 DSPLRQLHNCIAFSQHGDRDLPSMLSGGDLDGDLYNVIFKDTLIPRVISPPAQYPRVQEK 889
Query: 870 IMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDF 929
++D V ++I FFV +M D LG I+T H AD+ +CL LA LHS AVDF
Sbjct: 890 VLDRPVVRDDIIDFFVTFMQQDQLGRIATVHQTIADQKALGTFDPQCLLLAELHSTAVDF 949
Query: 930 AKTGAPAEMPLALK-PKEFPDF---------------MERED--------------KPR- 958
+K+G P ++ K P+ PDF +E D +P
Sbjct: 950 SKSGVPVDLARIPKFPRYRPDFQAPGPRVRIAESLSLLEEHDQMTVLDDEEEEEDERPTA 1009
Query: 959 --YISFGVLGKLYRATLDSI--MQIRSNAI-WSEKIAEASYDHDL------EVDGF--EA 1005
Y S +LGKLYRA +D + +Q R NAI S +A S + E GF +
Sbjct: 1010 RYYKSEKILGKLYRA-IDEVEFLQHRQNAIERSMAMAAPSVLKGVWAFVQSETVGFLWDH 1068
Query: 1006 FLGVAESHKEMYEEEMNALMNYYGAS------TEDEILTGNL 1041
+ A +++YE+ + +M Y ++ TE E+ G +
Sbjct: 1069 HVENALEIRQIYEDNLLEIMARYSSTPWKSSITEYEVFVGTI 1110
>gi|225678504|gb|EEH16788.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
Length = 1262
Score = 287 bits (734), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 259/874 (29%), Positives = 397/874 (45%), Gaps = 149/874 (17%)
Query: 297 GFNLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKL-------- 348
G +L + V+FQL LV N +S V A + ++ L +V+Q L KL
Sbjct: 315 GGDLPYRVMFQLQKLVWNGAISPVNAISFAYRVGKELVDADLDVVVQALDKLERDIQWSS 374
Query: 349 ---KSICYDPVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPE 405
++ D V+ +K + L + LS R I N + +RA VTP IY GP+
Sbjct: 375 PDVQASEVDVVALMKLFANALEIVLRERALSRSNRQIHLNNILIHRAQVTPCGIYLYGPQ 434
Query: 406 LETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTI 465
LET N V++ + F+RV FV+E S P S + IF SR +
Sbjct: 435 LETKNRVLRIYEANVDHFLRVEFVDE--SGDPIRYDSRASVDAIFQ--------SRFKGV 484
Query: 466 LQDGIVIGDKHYEFLAFSASQLRNNSVWMFA----SNDEVSAEDVRGWMGCFNKIRSVSK 521
L++GI I + +EFL FS S LR+ + W A +A + +G F+ I S +K
Sbjct: 485 LKEGITIAGRKFEFLGFSHSSLRSQTCWFVAPFVSGGTLYNATVIIQNLGRFDHIHSPAK 544
Query: 522 CAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCG 581
AAR+GQ FS + ++ + + + DVE N FSDG+G IS S ++ +
Sbjct: 545 QAARIGQTFSDTLTSIPISFDMLSVGEDVE----RNGRVFSDGVGTISPSLMYEIWKDHS 600
Query: 582 LSHT--PSAFQIRYG-----------------------GYKGVIAVDRN-SFRKLSLRRS 615
L P+ FQIR G KG+IA+D + + L LR+S
Sbjct: 601 LRAKVKPTVFQIRVAAPEPLLAGFHAYRGILLTETWFIGAKGMIALDSTKTGKSLMLRKS 660
Query: 616 MLKFESRNRM--LNVT---KWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGK 670
M+KF + LN+ +++P FLN ++I +L LGV+ F +Q ++ L
Sbjct: 661 MVKFPVPETVGGLNIELCGSGLKALPFFLNAQLIKILEDLGVEQSAFLKLQADEIERL-- 718
Query: 671 MLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQ--------- 721
R A Q ++ +I + L P + L LSH ++
Sbjct: 719 ----RATAPSTAQAARFLEDTHIAKSIGL----PWLISILEGFRLSHTNDEFLRRVMELA 770
Query: 722 ----LSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVD 777
L DLK R RI VP L G DETGIL G++F VT++ + HR
Sbjct: 771 VLIKLRDLKYRARIRVPNAVTLFGIMDETGILKEGEIFC-VTLSEDG---------HR-- 818
Query: 778 DKTSIVKGKVLVTKNPCLHPGDVRVLEAV-YEMKLEEKDYVDCIIFPQKGERPHPNECSG 836
+V+ +V+VT++P +HPGDV+V AV + +CI F Q G+R P+ SG
Sbjct: 819 --EVLVRPRVVVTRSPAMHPGDVQVARAVDVPADSPLRQLHNCIAFSQYGDRDLPSMLSG 876
Query: 837 GDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAI 896
GDLDGD++ + +D LIP T PP +Y ++++ V ++I FFV +M D LG I
Sbjct: 877 GDLDGDLYNVIYDETLIPKITVPPAEYPRVEEKVLNRPVVTDDIIDFFVTFMQQDQLGRI 936
Query: 897 STAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALK-PKEFPDF----- 950
+T H AD+ +CL LA LHS AVDF+K+G P ++ K P+ PDF
Sbjct: 937 ATIHQAIADQRDRGTFDEQCLLLAELHSTAVDFSKSGVPVDLARIPKFPRYRPDFQAHGP 996
Query: 951 ---------------------MEREDKPR-----YISFGVLGKLYRATLDSI-------- 976
++ ED R Y S+ +LGKLYR ++D +
Sbjct: 997 RVRIAESLSLHEEDEETTVHDLDDEDDERPPTRFYKSYKILGKLYR-SIDEVDFLHKWQH 1055
Query: 977 MQIRSNAIWSEKIAEASYDH-DLEVDGF--EAFLGVAESHKEMYEEEMNALMNYYGAS-- 1031
R + + + + + + E GF + + A +E+YE+ + LM+ Y ++
Sbjct: 1056 ATQRPSGLAAPSVLMGVWAYVQAETKGFLWDHHIENARYIREIYEDNLWGLMHRYSSTPW 1115
Query: 1032 ----TEDEILTGNLRNRASYL-QRDNRRYGDMKD 1060
+E E+ GN+ L QR +M++
Sbjct: 1116 KSFISEYEVFVGNILGHGQKLSQRQKDASTEMRE 1149
>gi|296810484|ref|XP_002845580.1| RNA-dependent RNA polymerase [Arthroderma otae CBS 113480]
gi|238842968|gb|EEQ32630.1| RNA-dependent RNA polymerase [Arthroderma otae CBS 113480]
Length = 1152
Score = 287 bits (734), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 219/727 (30%), Positives = 349/727 (48%), Gaps = 95/727 (13%)
Query: 381 LIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANA 440
L+ N + +RA+VTP IY LGP E N +++ + F+RV F++E+ P
Sbjct: 357 LVHQNNVLVHRAMVTPCGIYLLGPYAEVKNRILRKYLGNTDYFLRVEFLDENGD--PVFF 414
Query: 441 LSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFA---- 496
+ IF + R +++ GI + +++ FL FS S LR+ + W A
Sbjct: 415 DPNANLEKIF--------HERFSGVMKRGIEVAGRNFNFLGFSHSSLRSQTCWFAAPFTT 466
Query: 497 -SNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEM-IPDVEVTS 554
+ + A + +G F+ IRS SK AAR+GQ FS + ++ V + V + +PDVE
Sbjct: 467 PDGEYLDARTIINSIGHFDHIRSPSKQAARIGQAFSDTLTSISVSKEAVRLRVPDVE--- 523
Query: 555 DGNTYCFSDGIGKISLSFARQVAQKCGLSHT--PSAFQIRYGGYKGVIAVDRNSFRK-LS 611
N FSDG+G IS ++ + L P+ FQIR G KG++++D + + L
Sbjct: 524 -RNGRIFSDGVGVISRELMYKIWNEYALREKVKPTVFQIRIAGAKGMVSLDTSRQGEFLM 582
Query: 612 LRRSMLKFESRNRMLNVT---KWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILL 668
LR SM+KF + + N+ +++P +LN +II +L LGV F +QQ +++ L
Sbjct: 583 LRESMVKFPTDDSY-NIEICGAGIKALPFYLNSQIIKILEDLGVPFAAFHQLQQDEILSL 641
Query: 669 GKMLINREAALDVLQK---LNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDL 725
+ E A L+ + +L+ + G ++P+L ++ +L DL
Sbjct: 642 YSTFNSTEQAAKFLEDSPVPRSLRLPWLLLVLKGLGLRYTLDPFLHRIMELTTLLKLRDL 701
Query: 726 KSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKG 785
K R RI VP L G DETG L +++ F + +V+
Sbjct: 702 KYRARIRVPNAVTLYGIMDETGYLKENEIYC--------------VFLSEDGRREILVRD 747
Query: 786 KVLVTKNPCLHPGDVRVLEAV-YEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIF 844
V+VT++P LHPGDV+V+ AV + +C+ F Q G R P+ SGGDLDGD++
Sbjct: 748 NVVVTRSPALHPGDVQVVNAVDVPANSPLRRLHNCVAFSQHGVRDLPSMLSGGDLDGDLY 807
Query: 845 FISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHA 904
I +D LIP +T PP DY ++R ++ V +I FFV +M D LG I+T H A
Sbjct: 808 NIIYDTRLIPQQTFPPADYPLVKTRELNRKVESNDIIDFFVTFMQQDQLGRIATTHQAIA 867
Query: 905 DRDPDKARSSKCLHLATLHSMAVDFAKTGAPAE-MPLALKPKEFPDFM------------ 951
D+ R CL LA LHS+AVD++K+G P + + P+ PDFM
Sbjct: 868 DQSSLGTRDETCLKLAHLHSVAVDYSKSGIPVNVLDIPRAPRIRPDFMAPSPRILIEDSI 927
Query: 952 -------------------EREDKPR---YISFGVLGKLYRATLDSIMQIRSNAIWS--- 986
+ D+PR Y S +LG+LYR+ + R + +
Sbjct: 928 EDSIEHIIRETEKTVQEDDDDNDRPRIRYYKSHNILGRLYRSIDEQSFLRRLRDVGTVNN 987
Query: 987 ---EKIAEASYDH-DLEVDGF--EAFLGVAESHKEMYEEEMNALMNYYGAS------TED 1034
+ + ++ + + + EVDGF G+ KE+YE+++ LM Y A+ TE
Sbjct: 988 DSRKSVLQSIWRYVEKEVDGFFWNHLTGICHDIKEIYEDQLRELMRQYSATPWKSSITEY 1047
Query: 1035 EILTGNL 1041
E++ G +
Sbjct: 1048 EVVVGTI 1054
>gi|225554768|gb|EEH03063.1| RNA-dependent RNA polymerase [Ajellomyces capsulatus G186AR]
Length = 1240
Score = 287 bits (734), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 243/819 (29%), Positives = 383/819 (46%), Gaps = 105/819 (12%)
Query: 299 NLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSIC------ 352
N+ + V FQL LV N +S A + ++ + L +E +V++ L +L S
Sbjct: 320 NMPYRVRFQLQKLVWNGDISPAKAISFASRVRATLVIEDLDIVVRALMRLSSDVKWPSPD 379
Query: 353 -----YDPVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELE 407
D + V+ + L + ++ R + N +S +RA +TP Y GP E
Sbjct: 380 VEASEVDVPALVEVFKNALESTAREREMTRSNRPMHPNHVSIHRAQITPCGTYLDGPHAE 439
Query: 408 TSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQ 467
T N V+++++ + F+RV FV+E + + ++ IF SR T+L+
Sbjct: 440 TKNRVLRHYSSHVDHFLRVEFVDETGDPVRYDPRASIDM--IFE--------SRFKTVLK 489
Query: 468 DGIVIGDKHYEFLAFSASQLRNNSVWMFAS--NDEV--SAEDVRGWMGCFNKIRSVSKCA 523
GI I + +EFL FS S LR+ + W A D + +A + +G F+ I+S +K A
Sbjct: 490 SGINIAGRKFEFLGFSHSSLRSQTCWFVAPFYKDRILYNATTIIQNLGRFDHIQSPAKQA 549
Query: 524 ARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLS 583
AR+GQ FS + ++ + + + + DVE N FSDG+G IS S + + L
Sbjct: 550 ARIGQTFSDTLTSIPISEKYISVGKDVE----RNGRVFSDGVGTISPSVMYMIWKDHSLR 605
Query: 584 HT--PSAFQIRYGGYKGVIAVD-RNSFRKLSLRRSMLKFESRN--RMLNVT---KWSESM 635
P+ FQIR G KG+I++D R + L LR SM+KF + N+ + +
Sbjct: 606 TVVKPTVFQIRLAGAKGMISLDSRKKGKSLVLRPSMIKFHLPHSYNAFNIEICGSGLKPL 665
Query: 636 PCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNI-- 693
P FLN ++I +L LGV D VF +Q ++ L + A L+ N S +
Sbjct: 666 PFFLNAQLIKILEDLGVDDSVFLRLQADEISRLRATATSTAKAARFLEDTNIAKSVGLPW 725
Query: 694 LVKMLLQ-GYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYG 752
L+ +L G + + +L ++ +L DLK R RI VP L G DETGIL G
Sbjct: 726 LINILEGFGLRHSNDEFLRRVMELAVLIKLRDLKYRARIRVPNAVTLFGIMDETGILKEG 785
Query: 753 QVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAV-YEMKL 811
+VF L K + +V +V+VT++P +HPGDV++ AV
Sbjct: 786 EVFC------TSLSDKGV--------REVLVNPRVVVTRSPAMHPGDVQIARAVDVPADS 831
Query: 812 EEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIM 871
+ +CI F Q G R P+ SGGDLDGD++ + +DN L+P P +Y + +++
Sbjct: 832 PLRQLHNCIAFSQHGHRDLPSMLSGGDLDGDLYNVIFDNTLLPKRIARPAEYPRVQEKVL 891
Query: 872 DHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAK 931
V E+I FFV +M D LG I+T H ADR P +CL LA LHS AVDF+K
Sbjct: 892 GRAVVREDIIDFFVTFMQQDQLGRIATIHQALADRRPLGTFDPECLLLAELHSTAVDFSK 951
Query: 932 TGAPAEMPLALK-PKEFPDFMEREDKPR-------------------------------Y 959
TG P ++ K P PDF + R Y
Sbjct: 952 TGVPVDLARIPKFPSCRPDFQAPSPRIRIAENLSLLEGDMDAVQDGGDEDDDERPAVRFY 1011
Query: 960 ISFGVLGKLYRATLD--------SIMQIRSNAIWSEKIAEASYDH-DLEVDGF--EAFLG 1008
S +LGKLYR+ + S M++ S A+ + + + ++ E +GF + +
Sbjct: 1012 KSENILGKLYRSIDEVKFLQHRQSAMELPS-AMGAPSVLQGVWEFVQREAEGFLWDHHIE 1070
Query: 1009 VAESHKEMYEEEMNALMNYYGAS------TEDEILTGNL 1041
A +++YE+ + +M Y ++ TE E+ G +
Sbjct: 1071 HALDIRQIYEDNLLEIMARYSSTPWKSSITEYEVFVGTI 1109
>gi|451855231|gb|EMD68523.1| hypothetical protein COCSADRAFT_178332 [Cochliobolus sativus ND90Pr]
Length = 1244
Score = 286 bits (733), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 259/871 (29%), Positives = 411/871 (47%), Gaps = 117/871 (13%)
Query: 296 PGFNLSHEVLFQLNSLVHNQKVS---LVAADAELIQILSGLSMETALMVLQKLHKLKSIC 352
P FN + V +QL +LV ++ ++ + QI ET + +++L +
Sbjct: 343 PAFNFA--VRYQLAALVLEGTITPTAMINLIPHIHQIAKQHGAETTAIAVRRLGQQVPTP 400
Query: 353 YDPVSF----VKTQLHVLGRN---CKSIPLS----SHKRLIDHNVMSCYRALVTPMKIYC 401
+S V+ + ++ N CK L+ + K+ H++ Y+A VTP I
Sbjct: 401 APVISAEMFKVRKFVELVQENVEDCKHWGLAYRDLNGKQKKHHHLALTYKATVTPTGILL 460
Query: 402 LGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIF--SKPYRTKIY 459
GP+ + SN V++ + FMRV F +ED LS +F S+ + ++Y
Sbjct: 461 RGPDWDVSNRVLRRYTTRTEYFMRVFFADED-------GLS------VFHDSRASQNQVY 507
Query: 460 SRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFA----SNDEVSAEDVRGWMGCFNK 515
R +LQ+GI + + ++FL FS + LRN+ W A V A +V +G F+
Sbjct: 508 ERFRNVLQNGISVAGRTFQFLGFSHASLRNHQAWFMAPFEMDGSLVRARNVIQDLGDFSH 567
Query: 516 IRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQ 575
I +KCAAR+GQ FS + VPV + + +V+ + N FSDG G ISL R
Sbjct: 568 IHCSAKCAARIGQAFSDT--IFSVPVPETAYVTEVKDDVERNGRTFSDGCGTISLELLRT 625
Query: 576 VAQKCG---LSHTPSAFQIRYGGYKGVIAVDRN-SFRKLSLRRSMLKFESRN--RMLNVT 629
V + P+ QIRY G KGV+++D + S ++L +R+SM K+ ++ R L +
Sbjct: 626 VWRALPPERRQQRPTVLQIRYRGAKGVLSLDASLSGQQLHVRKSMTKYIAKETWRDLELC 685
Query: 630 KWS-ESMPCFLNREIISLLSTLGVKDEVFEAMQQQQ---LILLGKMLINREAALDVLQKL 685
+ + + FLN + I +L LGV E F +Q + L L+ + +N + L
Sbjct: 686 GAAYKPLSVFLNHQFIKILEDLGVPAEKFLDVQDEAVKILKLITEHPLNAASFLAYSHSC 745
Query: 686 NGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDE 745
+ M G + + +L+ ++ + L LK R RI + KG LL G DE
Sbjct: 746 VFAKVPQLFEMMHRIGLSFHADRFLTDIVEVAAMSSLRSLKYRARIPIEKGYLLYGVMDE 805
Query: 746 TGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEA 805
T L YG+V++ E D++ + ++ +V +++VT+ P LHPGDV+++ A
Sbjct: 806 TNTLKYGEVYIAT-------EDHDKTGKLK---RSILVGNQIVVTRAPALHPGDVQLVNA 855
Query: 806 V-YEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYT 864
V + +C++F Q+G R P++ SGGDLDGD+F I +D LIP T P +Y
Sbjct: 856 VDVPDDSPLRALHNCVVFSQQGPRDLPSQLSGGDLDGDLFHIIYDQRLIPAYTVEPAEYD 915
Query: 865 GRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHS 924
+ + V +I FF++YM D LG IS H + AD P+ R CL LA L S
Sbjct: 916 KVPANDLGRPVEANDIVDFFIEYMKMDRLGQISNKHKIRADVKPNGTRHPDCLILAKLAS 975
Query: 925 MAVDFAKTGAPAEMPLALKPKEF--PDFME------------------------------ 952
AVDF+KTG PA+M L K + PDFM
Sbjct: 976 DAVDFSKTGVPADMSLIPKGIDHFRPDFMAPGSNLVINELGAAELAGIEEDDIDDPDSIS 1035
Query: 953 --REDKPR---YISFGVLGKLYRATLDSIM--QIRSN-AIWSEKIAEASYDHDL------ 998
DK R Y S +LG LYRA + +++S+ I+ ++ + S + L
Sbjct: 1036 VLDADKGRIRYYRSDKILGILYRAIDEKKFFDKMKSDYEIFRQRWGKESLVNKLKRYIIR 1095
Query: 999 EVDG--FEAFLGVAESHKEMYEEEMNALMNYY----GAS-TEDEILTGNL---RNRAS-- 1046
E G +E AE +E YE+ M +M+ GA TE E+ +GN+ + RAS
Sbjct: 1096 ETQGLQWEHHWDFAEQLRETYEDNMLEIMDTLRPTRGAPLTELEVFSGNILGKKERASSR 1155
Query: 1047 YLQRDNRRYGDMKDRILLSA-KNLQNEAKEW 1076
Y++ N + +R + S K + + K+W
Sbjct: 1156 YIREANLEVQERFNRDVSSMIKTIVHGDKDW 1186
>gi|312081788|ref|XP_003143174.1| hypothetical protein LOAG_07593 [Loa loa]
Length = 1450
Score = 286 bits (733), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 244/825 (29%), Positives = 397/825 (48%), Gaps = 152/825 (18%)
Query: 391 RALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIF 450
+ ++TP ++ + PEL N V++ F K + +R+ F ++D + P+
Sbjct: 372 KVVITPTRVLLVVPELLMGNRVLRTFDKDGNGALRIQFRDDDGT--PST----------- 418
Query: 451 SKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWM 510
+ +L S SQ+R+N + + A +R +
Sbjct: 419 --------------------------FVYLGSSNSQMRDNGCYFYDDGKGGQAHKIREQL 452
Query: 511 GCFNKIRSVSKCAARMGQLFSSSKQ-TLVVPVQDVEMIPDVEVTSDGNT--YCFSDGIGK 567
G F++ ++ K +RMGQ F+ +K+ T+ + DV D N Y FSDG GK
Sbjct: 453 GKFDRC-NIPKMMSRMGQCFTQAKRCTVTLKRHKYNKTYDVIGGRDTNQAFYIFSDGAGK 511
Query: 568 ISLSFARQVAQKCGL-SHTPSAFQIRYGGYKGVIAVD---------------------RN 605
+S FA ++A GL + PS +QIR+ G KGV++VD N
Sbjct: 512 VSKEFAEKIALDIGLGTSVPSCYQIRHRGIKGVLSVDPSLDQRKHWAAANNVVDNNKMTN 571
Query: 606 SFRKLSL--RRSMLKFES-RNRMLNVTKWSESMPCFLNREIISLLSTL-GVKD-EVFEAM 660
L++ R S KF++ R+ + + K+S LNR +IS+L + G++ V E +
Sbjct: 572 KQNDLAVLFRPSQDKFKAPRDEYIEIVKYSTPTSVCLNRPMISILDQVSGMQGFSVHERI 631
Query: 661 QQQ-------QLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMM 713
+++ Q+ L ML++ E + L +L N+ L +G+ EP+ +
Sbjct: 632 RKRIHDLLDIQMTQLADMLMSEEKCREKLNELPW--RVNVSRLTLARGFALTQEPFFRSL 689
Query: 714 LLSHHENQLSDLKSRCRIYVPK--GRLLIGCFDETGILNYGQVFVRVTMTREELESKDQS 771
L ++ + L L ++ +I VP GR + G DETG L +GQVFV+ T +S
Sbjct: 690 LRANIKCTLKKLIAKVQIQVPPHFGRSMFGVMDETGQLQWGQVFVQCT----------RS 739
Query: 772 FFHRVDDKTS---IVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGER 828
+ + K++ I+ GKV++TKNPC+ GDVRV EAV +L VD ++FPQ G R
Sbjct: 740 IWLKTPSKSAAKIILVGKVMLTKNPCIVAGDVRVFEAVDIPELHH--LVDVVVFPQHGPR 797
Query: 829 PHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRS--RIMDHDVTLEEIHKFFVD 886
PHP+E +G DLDGD + + WD +L+ EPP+D+T S +I++ + E+ KFFV+
Sbjct: 798 PHPDEMAGSDLDGDEYSVIWDPELMFEHNEPPLDFTKSASDNKIVEEEQVDLEMRKFFVN 857
Query: 887 YMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTG-APAEMPLA---- 941
Y+ D++G IS A LV+AD S C+++A HS AVDF KTG AP+ PL
Sbjct: 858 YIKQDSIGTISNAFLVNADL--YGITSEVCINIARKHSKAVDFPKTGNAPS--PLTRQWT 913
Query: 942 -------LKP---KEFPDFMEREDKPRYISFGVLGKLYRAT--LDSIMQIRSNAIWSEKI 989
L P + +PDFM + +P YIS ++G+LYR LD + + + S I
Sbjct: 914 QGKNGNILPPERAERWPDFMCKNHEPSYISSRLVGQLYRRIRLLDDALNLTAAMEGSVTI 973
Query: 990 AEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTG---NLRNRAS 1046
D DLE G+E + VA+ + Y + ++M YG E ++ +G +RNR S
Sbjct: 974 M---LDPDLEYPGWEQYQNVAKIQLDSYHSHIRSIMENYGIEDEGQLFSGFISVIRNRIS 1030
Query: 1047 YLQRDNRRYGD----MKDRILLSAKNLQNEAKEWFGSSCK-------ENE---------- 1085
D+ + + ++ ++ + ++ + FG + +N+
Sbjct: 1031 DRDTDDMSFYNTNHIIEKKVSAVFRAYRHRFFDEFGGFLESTLPDYDDNQSGNAQERRIC 1090
Query: 1086 -HPQL-----ASAWYHVTYSPSYCKERMALLSFPWIVGDILLNIK 1124
HP L ASA+Y + Y + +LSF W+V DIL ++K
Sbjct: 1091 IHPSLDMKRKASAYYILCYRNASMDTSYRILSFGWLVWDILCHVK 1135
>gi|408389379|gb|EKJ68835.1| hypothetical protein FPSE_11001 [Fusarium pseudograminearum CS3096]
Length = 1277
Score = 286 bits (733), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 211/685 (30%), Positives = 337/685 (49%), Gaps = 76/685 (11%)
Query: 385 NVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTS 444
N + ++ALVTP ++ GPE E+ N V++ +A Y F+RV F EED L
Sbjct: 436 NQIWVFKALVTPTRLLLDGPEAESKNRVLRKYADYNDYFLRVLFCEEDGQDL-------R 488
Query: 445 IQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWM---FASNDEV 501
+ ++P IYS+ ++ GI I + ++FL FS S LR++S W F D
Sbjct: 489 FHPKVDNEP----IYSQFRRMMDHGIQIAGRKFDFLGFSHSSLRSHSAWFSAPFVDKDHQ 544
Query: 502 --SAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDV--EVTSDGN 557
S E + +G F IR +KCAAR+GQ FS + VP+ + ++P +V S+
Sbjct: 545 LQSPEAILQALGDFRDIRVPAKCAARIGQAFSET--PYAVPISENNIVPRYIPDVKSEDG 602
Query: 558 TYCFSDGIGKISLSFARQVAQKCGL-SHTPSAFQIRYGGYKGVIAVD-RNSFRKLSLRR- 614
+ FSDG+G IS + + S P+ QIR+GG KG++++D R + +R+
Sbjct: 603 SRVFSDGVGTISQEALESIWPYLSMNSAAPTCLQIRWGGCKGMLSLDTRLEGKVFCIRQE 662
Query: 615 SMLKFESRN--RMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKML 672
SM+KF+S + + S+ + LNR++I +L +G +DE F +Q L +L
Sbjct: 663 SMMKFKSEDTGELGICDTASKPLRLVLNRQMIKILEDMGTRDEWFFELQNNALDIL---- 718
Query: 673 INREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHEN------------ 720
R D + ++ I + M L P + L M + + +
Sbjct: 719 --RNVTADATNTSSFLEHHAIGINMGL----PRLVKQLEKMDIDYRRDKFLKAAVEHVVL 772
Query: 721 -QLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDK 779
+L LK + RI V G L G DETG L G+V+V T + K
Sbjct: 773 RELRLLKHKARIPVDNGVTLFGIMDETGFLKEGEVYVTYDKTYGRNNGRGI--------K 824
Query: 780 TSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEE-KDYVDCIIFPQKGERPHPNECSGGD 838
+++ G+++VT++P LHPGD+++++ V + + +CIIF QKG+R P+ SGGD
Sbjct: 825 STLTDGEIIVTRSPALHPGDIQLVKQVTPPQGHSLRSLQNCIIFSQKGKRDLPSMLSGGD 884
Query: 839 LDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAIST 898
LDGDI+ I WD + +P P DY + +D V ++I FF+++M D LG I+T
Sbjct: 885 LDGDIYNIIWDPEAMPSRVFRPADYPRVTPQPLDRQVEPKDIADFFINFMRTDILGVIAT 944
Query: 899 AHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEM-PLALKPKEFPDFMEREDKP 957
H++ AD + + C+ LA LHS AVDF+KTG P + L P+ PDF+
Sbjct: 945 RHVILADYNDLGSIDRDCIALAELHSTAVDFSKTGIPVNVKALPRAPRFRPDFLATAPPL 1004
Query: 958 RYISFGVLGKLYR----ATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESH 1013
+ G L + D + + ++N SEKI Y + VD
Sbjct: 1005 KLYDKGQLAHIGEDDEMDNADDMARTKTNYYQSEKILGQLYRN---VD-----------E 1050
Query: 1014 KEMYEEEMNALMNYYGASTEDEILT 1038
K++++E+++ +N G S D++LT
Sbjct: 1051 KKIWDEDIHRSINTAGPSVWDQLLT 1075
>gi|396482889|ref|XP_003841572.1| similar to rna-dependent rna polymerase [Leptosphaeria maculans JN3]
gi|312218147|emb|CBX98093.1| similar to rna-dependent rna polymerase [Leptosphaeria maculans JN3]
Length = 1248
Score = 286 bits (732), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 193/603 (32%), Positives = 314/603 (52%), Gaps = 45/603 (7%)
Query: 368 RNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVT 427
R LS +R +H ++ Y+A +TP + GP+ + SN V++ + K+ FMRV
Sbjct: 425 RELTGYDLSRKQRKHNHLALT-YKATITPTGMLLRGPDWDVSNRVLRKYGKHTECFMRVF 483
Query: 428 FVEEDWSKLPANALSTSIQRGIFSKPYRT--KIYSRILTILQDGIVIGDKHYEFLAFSAS 485
F +ED LS +F P + ++Y R +L++GI + + ++FL FS +
Sbjct: 484 FADED-------GLS------VFFDPRASQDRVYERFRGVLRNGITVAGRRFDFLGFSHA 530
Query: 486 QLRNNSVWMFAS--NDEVS--AEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPV 541
LR++ W D +S A D+ +G F+ IR ++CAAR+GQ FS + ++ VP
Sbjct: 531 SLRSHQAWFMTPFIKDGISICARDIIEDLGDFSHIRCSARCAARIGQAFSDTIFSVRVP- 589
Query: 542 QDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCG---LSHTPSAFQIRYGGYKG 598
D + + +V N FSDG G ISL R+V P+ QIRY G KG
Sbjct: 590 -DSAYVTESKVDVKRNGRYFSDGCGTISLELMRKVWNALPPERREQRPTVLQIRYRGAKG 648
Query: 599 VIAVDRNSF-RKLSLRRSMLKFESRNRMLNVTKWSES---MPCFLNREIISLLSTLGVKD 654
V+++D + +L +R+SM K+ ++ ++ + + FLN + I +L LGV +
Sbjct: 649 VLSLDTSLVGEQLHVRQSMTKYIAKEGWKDLELCGAAYKPLTVFLNHQFIKILEDLGVPE 708
Query: 655 EVFEAMQQQQ---LILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLS 711
F+A+Q + L L+ + IN + L+ + + M G + + +L+
Sbjct: 709 RNFKAIQNEAVDTLKLITEHPINAASFLEYSHSSVYARTPRLFELMHQIGLSFHADRFLT 768
Query: 712 MMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQS 771
++ + L LK R RI + +G LL G DETGIL G+V+V T + + + K +
Sbjct: 769 DIVEVAAMSNLRSLKYRARIPISQGYLLYGIMDETGILKEGEVYV-ATKSHDAIGHKSRK 827
Query: 772 FFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEE-KDYVDCIIFPQKGERPH 830
++ +V++T+ P LHPGDV++++AV + + +C++F Q+G R
Sbjct: 828 I---------LIGDRVIITRAPALHPGDVQIVKAVDVPEYSPLRALHNCVVFSQQGARDL 878
Query: 831 PNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMIN 890
P++ SGGDLDGD+F I +D+ LIP T PP DY + + V + ++ FFV+YM
Sbjct: 879 PSQLSGGDLDGDLFHIIYDSRLIPDFTVPPADYKSEPPKDLGRPVQVNDMVDFFVEYMNM 938
Query: 891 DTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEF--P 948
D LG IS H + AD P+ R C+ LA L S AVDF+K+G PA++ + ++ P
Sbjct: 939 DRLGQISNKHKIRADIKPNGTRDPDCILLAQLASDAVDFSKSGNPADINKVPRGSDWIRP 998
Query: 949 DFM 951
DFM
Sbjct: 999 DFM 1001
>gi|341891713|gb|EGT47648.1| hypothetical protein CAEBREN_06166 [Caenorhabditis brenneri]
Length = 1640
Score = 285 bits (730), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 231/851 (27%), Positives = 409/851 (48%), Gaps = 138/851 (16%)
Query: 384 HNVMSCYRALV-TPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALS 442
H+ R +V TP ++ + PE N V++ F K + +R+TF +++ K+ N
Sbjct: 482 HDGFQIVRKVVFTPTRVIYVAPEAIMGNRVLRRFDKDGTKVLRITFRDDNNGKMRTNTTE 541
Query: 443 TSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWM-------- 494
+++ +K +R +G+ + ++ + FL S SQ+R++ +
Sbjct: 542 ELLEKTA-NKFFR------------EGVRVANRDFGFLGCSNSQMRDSGAYFMLKATPSQ 588
Query: 495 ----FASNDEVSAE----------DVRGWMGCFNKIRSVSKCAARMGQLFSSSKQT-LVV 539
+ N + E +VR +G F+++ +V K ARMGQ F+ S+ T + +
Sbjct: 589 LERFYRKNPRATREQLLNYKPLIDEVRLNLGKFSEVENVPKMIARMGQCFTQSRLTGVAL 648
Query: 540 PVQDVEMIPDVE--VTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHT-PSAFQIRYGGY 596
++ I D E S TY FSDG+G +S FA+ +AQ + PS FQIR+ G
Sbjct: 649 ERKNYCKIFDYEGGKNSKQATYTFSDGVGMMSCRFAKIMAQSMNYDRSVPSCFQIRFRGN 708
Query: 597 KGVIAVD-----------RNSFRKL------SLRRSMLKFESRN---RMLNVTKWSESMP 636
KGVIA++ R++ ++ + R S +KF++++ + + K + +P
Sbjct: 709 KGVIAMEPQLDDLRNWAIRHALEEIIPEINVAFRPSQIKFQAKHIEGDQIEMVKPAGPVP 768
Query: 637 CFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVK 696
LN+ +I++L + E+ + ++++ + L++R+ Q + +N L +
Sbjct: 769 VSLNKPLINILDQVS---EMQGVVCHKRMVSRIEELMDRQVQSFAKQMNDETYCRNRLKE 825
Query: 697 MLLQ----------GYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPK--GRLLIGCFD 744
+ G+ + EP+ ++ + + ++ + +I +PK GR L G D
Sbjct: 826 FPRRVDIDYLRTTWGFTLSREPFFRSLIKAAIKFSITKQLRKEQIQIPKELGRTLFGVVD 885
Query: 745 ETGILNYGQVFVRVT---MTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVR 801
ETG L YGQVFV+ + + + + DQS + V +V GK+L++KNPC+ PGDVR
Sbjct: 886 ETGRLQYGQVFVQYSSNILNKHPVRLADQSVQNGV-----VVTGKILISKNPCIVPGDVR 940
Query: 802 VLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPM 861
+ EAV +L D ++FPQ G RPHP+E +G DLDGD + + WD ++ EP
Sbjct: 941 IFEAVDIPELHH--MCDVVVFPQAGPRPHPDEMAGSDLDGDEYSVIWDPQMLLEWNEPAF 998
Query: 862 DYTGRRSRI-MDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLA 920
D++ + RI D + + +F+V Y+ D++G IS AHL ++D+ S+ C++LA
Sbjct: 999 DFSVEKQRIEWDPNEVDNLMREFYVQYLKLDSVGQISNAHLHNSDQ--YGLMSTVCMNLA 1056
Query: 921 TLHSMAVDFAKTGAPA--------------EMPLALKPKEFPDF-MEREDKPRYISFGVL 965
+S AVDF K+G P EM P+ PDF M E P+Y+S +
Sbjct: 1057 KKNSQAVDFTKSGIPPADMTRKWEKDPITDEMVPPENPERIPDFHMGNERNPQYVSPRLC 1116
Query: 966 GKLYR--ATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNA 1023
G+L+R +D++++I +++ + D D+ + G+E F+ A + Y ++ +
Sbjct: 1117 GRLFREFQAIDNVIKISEE---KDELYDIEIDEDIMIYGYERFMVEARTELANYNGQLRS 1173
Query: 1024 LMNYYGASTEDEILTG---NLRNRASYLQRDNRRYGD----MKDRILLSAKNLQNEAKEW 1076
+M YG +TE EI++G +RNR S +D+ + + ++ R+ + + E
Sbjct: 1174 IMETYGIATEGEIMSGCIIEMRNRISDKDQDDMSFFNTNLMIETRVTTLICRFREKFFEP 1233
Query: 1077 FG----------------SSC-------KENEHPQLASAWYHVTYSPSYCKERMALLSFP 1113
FG S+C N Q A AWY Y + LSF
Sbjct: 1234 FGGYQSCCSIIENADENNSTCLAYRCRSATNSMMQKAVAWYRACYEFAQSNRETRKLSFA 1293
Query: 1114 WIVGDILLNIK 1124
WIV D++ ++
Sbjct: 1294 WIVYDVIAKVR 1304
>gi|241997884|ref|XP_002433585.1| RNA-directed RNA polymerase, putative [Ixodes scapularis]
gi|215495344|gb|EEC04985.1| RNA-directed RNA polymerase, putative [Ixodes scapularis]
Length = 528
Score = 285 bits (729), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 198/544 (36%), Positives = 282/544 (51%), Gaps = 39/544 (7%)
Query: 506 VRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNT------- 558
+R +G + IRSV K ARMGQ FS S + VP Q + DV +
Sbjct: 1 IRQGIGDLSSIRSVPKLMARMGQAFSQSLGFVTVPRQYTAVEADVRCRAPPGASAAALAE 60
Query: 559 -----YCFSDGIGKISLSFARQVAQKCGL--SHTPSAFQIRYGGYKGVIAVDRN-SFRKL 610
Y FSDGIG+IS + R+V + L P A QIRYGG KG++ VD + R++
Sbjct: 61 AAKRDYIFSDGIGRISPALMRKVYRSLELEDGEEPCAVQIRYGGCKGMLLVDPTMAGRRI 120
Query: 611 SLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQL-ILLG 669
R SM KF S + L V K S+ +LNR +I++L G++ + F A+Q + L +
Sbjct: 121 VFRTSMCKFPSDHEDLYVLKTSKPRVLYLNRPMITILEQSGIRAKAFLALQNRVLDSFIN 180
Query: 670 KMLINREAALDVLQKLNGVDSKNILVKMLLQ-GYEPNVEPYLSMMLLSHHENQLSDLKSR 728
ML EAA Q L G + + K L G + VEP+ ++ + + LS+ ++
Sbjct: 181 SMLDAHEAA----QVLCGYCALRLPYKELAGVGVDLTVEPFFRGLIRAVNRKVLSEWLTK 236
Query: 729 CRIYVP--KGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGK 786
RI VP KGR + G DET L YGQVFV+ + + F ++ D +I+KG
Sbjct: 237 ARILVPPEKGRTMFGVLDETDTLEYGQVFVQYS---------NDMFRYKATDPATILKGD 287
Query: 787 VLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFI 846
V+VTKNPC+HPGD+R L AV +L DCI+FP KGERPHP+E SG DLDGD + +
Sbjct: 288 VIVTKNPCMHPGDIRRLTAVDVPRLHH--VRDCIVFPAKGERPHPDEMSGSDLDGDEYSV 345
Query: 847 SWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADR 906
W DLI PM Y + + ++++ FF Y+ D +G I+ AHLV AD
Sbjct: 346 LWYEDLIFRNNCSPMHYYSDPPKERKAPIEVQDMIDFFCQYIKGDKIGLIANAHLVWADM 405
Query: 907 DPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMERED-KPRYISFGVL 965
S +C LA ++ +DFAK G + KP +PDFME+ D K Y S VL
Sbjct: 406 LDGGINSRRCRDLARKCAVNLDFAKRGDLKGFQNSEKPPMYPDFMEKLDTKNTYCSKKVL 465
Query: 966 GKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALM 1025
G+LYR + ++ + E + ++ D L +DG E F+ A + Y ++ AL+
Sbjct: 466 GQLYR----NCKKVELSTECLEVVEDSLPDPRLLLDGREEFIESARTSYRRYAMKIRALL 521
Query: 1026 NYYG 1029
YG
Sbjct: 522 KSYG 525
>gi|342878783|gb|EGU80072.1| hypothetical protein FOXB_09347 [Fusarium oxysporum Fo5176]
Length = 1277
Score = 285 bits (729), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 233/790 (29%), Positives = 382/790 (48%), Gaps = 95/790 (12%)
Query: 299 NLSHEVLFQLNSLVHNQKVSLVAADAELIQIL---------SGLSMETALMVLQKLH-KL 348
N+ +LFQ+ +LV N ++ A+ EL+QIL + ++ ++ LH K+
Sbjct: 331 NVHFALLFQVQALVWNNYIN-PASGIELLQILEEVIKDAKENQVAAPVTTDAMKGLHQKI 389
Query: 349 KSIC--YDP---------VSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPM 397
C DP S + + N K + K + DH + ++A+VTP
Sbjct: 390 PYPCPGTDPDELNVITLMTSIMNEEYEARAENPKRDRIYGVK-IPDHQIY-IFKAMVTPT 447
Query: 398 KIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTK 457
++ GPE ++ N V++ + + F+RV F EED L + + ++P
Sbjct: 448 RVLLSGPEPDSKNRVLRKYHENNDYFLRVLFCEEDGQDL-------NFHPKVDNEP---- 496
Query: 458 IYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFA----SN-DEVSAEDVRGWMGC 512
I++R ++ +GI I + ++FL FS S LR++S W A SN + + + +G
Sbjct: 497 IFARFRHVMDEGITIAGRKFDFLGFSHSSLRSHSAWFSAPFTDSNFERQTPAAILQALGD 556
Query: 513 FNKIRSVSKCAARMGQLFSSSKQTLVVPVQDV----EMIPDVEVTSDGNTYCFSDGIGKI 568
F++IR +KCAAR+GQ FS + +P+ + IPDV+ S+ T FSDG+G I
Sbjct: 557 FSEIRVPAKCAARIGQAFSET--PYAIPIFETGICHRFIPDVK--SEDGTRVFSDGVGTI 612
Query: 569 SLSFARQVAQKCGL-SHTPSAFQIRYGGYKGVIAVD-RNSFRKLSLRR-SMLKFESRN-R 624
S ++ + + P+ QIR+GG KG++++D R R +R+ SM+KF S + R
Sbjct: 613 SREALEEIWPYLSMRAAAPTCLQIRWGGCKGMLSLDTRLKGRVFCIRQESMMKFPSDDLR 672
Query: 625 MLNVTKWS-ESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQ 683
L + S + + LNR++I +L +G ++ F +Q L +L R A D
Sbjct: 673 ELGICDASSKPLRLVLNRQMIKILEDMGTTNDWFFRLQNNALDIL------RNATADATN 726
Query: 684 KLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHEN-------------QLSDLKSRCR 730
+D + I V M L P + L M + + + +L LK + R
Sbjct: 727 TSYFLDYQAIGVNMGL----PKLVKQLEKMGIDYRRDKFLKSAVEHVVFRELRLLKHKAR 782
Query: 731 IYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVT 790
I V KG L G DETG L+ +VFV T + R++ +++ G+++VT
Sbjct: 783 IPVDKGVTLFGVMDETGFLDADEVFVTYDKTHGVYRGR------RIN--STLKDGQIIVT 834
Query: 791 KNPCLHPGDVRVLEAVYEMKLEE-KDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWD 849
++P LHPGD++++ V + + +CI+F QKG+R P+ SGGDLDGD++ I WD
Sbjct: 835 RSPALHPGDIQIVNQVTPPQGHSLRSLQNCIVFSQKGKRDLPSMLSGGDLDGDLYNIIWD 894
Query: 850 NDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPD 909
D +P P DY + + +D V ++I FFVD+M D LG I+T H+V AD
Sbjct: 895 PDALPDNYFLPADYPRVKPKPLDRPVKPQDIADFFVDFMRTDILGMIATRHVVLADYHEQ 954
Query: 910 KARSSKCLHLATLHSMAVDFAKTGAPAEM-PLALKPKEFPDFMEREDKPRYISFGVLGKL 968
C+ LA +HS AVDF+KTG P ++ L P PDF+ + G + L
Sbjct: 955 GTTHPDCISLAGMHSTAVDFSKTGIPVDVKALPKNPPFRPDFLAAAPPLKTYEKGQIAHL 1014
Query: 969 YRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYY 1028
R + A + K E+ D L K++++E+++ ++N
Sbjct: 1015 -RDDDEDDNADDGMARYKAKYYES--------DKILGRLYRNVDEKKIWDEDIHRIINTA 1065
Query: 1029 GASTEDEILT 1038
G S D++LT
Sbjct: 1066 GPSVWDQLLT 1075
>gi|341880571|gb|EGT36506.1| hypothetical protein CAEBREN_02888 [Caenorhabditis brenneri]
Length = 1640
Score = 285 bits (728), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 234/851 (27%), Positives = 406/851 (47%), Gaps = 138/851 (16%)
Query: 384 HNVMSCYRALV-TPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALS 442
H+ R +V TP ++ + PE N V++ F K + +R+TF +++ SK+ N
Sbjct: 482 HDGFQIVRKVVFTPTRVIYVAPEAIMGNRVLRRFDKDGTKVLRITFRDDNNSKMRTNTTE 541
Query: 443 TSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVS 502
+++ +K +R +G+ + ++ + FL S SQ+R++ +
Sbjct: 542 ELLEKTA-NKFFR------------EGVRVANRDFGFLGCSNSQMRDSGAYFMLKATPGQ 588
Query: 503 AE----------------------DVRGWMGCFNKIRSVSKCAARMGQLFSSSKQT-LVV 539
E +VR +G F+++ +V K ARMGQ F+ S+ T + +
Sbjct: 589 LERFYRKYPRHTREQLLSYKPWIDEVRLNLGKFSEVENVPKMIARMGQCFTQSRLTGVAL 648
Query: 540 PVQDVEMIPDVE--VTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHT-PSAFQIRYGGY 596
++ I D E S Y FSDG+G +S FA+ +AQ + PS FQIR+ G
Sbjct: 649 ERKNYCKIFDYEGGKNSKKAAYTFSDGVGMMSCRFAKIMAQSMNYDRSVPSCFQIRFRGN 708
Query: 597 KGVIAVD------RN-SFR----------KLSLRRSMLKFESRN---RMLNVTKWSESMP 636
KGVIA++ RN S R K++ R S +KF++++ + + K + +P
Sbjct: 709 KGVIAMEPQLDDLRNWSIRHQLDDLIPEIKVAFRPSQIKFQAKHIEGDQIEMVKPAGPVP 768
Query: 637 CFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVK 696
LN+ +I++L + E+ + ++++ + L++R+ Q + +N L +
Sbjct: 769 VSLNKPLINILDQVS---EMQGVLCHKRMVSRIEELMDRQVQSFAKQMNDETYCRNRLKE 825
Query: 697 MLLQ----------GYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPK--GRLLIGCFD 744
+ G+ + EP+ ++ + + ++ + +I +PK GR L G D
Sbjct: 826 FPRRVDIDYLRTTWGFTLSREPFFRSLIKAAIKFSITKQLRKEQIPIPKELGRTLFGVVD 885
Query: 745 ETGILNYGQVFVRVT---MTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVR 801
ETG L YGQVFV+ + + + + DQS + V +V G +L++KNPC+ PGDVR
Sbjct: 886 ETGRLQYGQVFVQYSSNILNKHPVRLADQSVQNGV-----VVTGPILISKNPCIVPGDVR 940
Query: 802 VLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPM 861
+ EAV +L D ++FPQ G RPHP+E +G DLDGD + + WD ++ EP
Sbjct: 941 IFEAVDIPELHH--MCDVVVFPQSGPRPHPDEMAGSDLDGDEYSVIWDPQMLLEWNEPAF 998
Query: 862 DYTGRRSRI-MDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLA 920
D++ + RI D + + +F+V Y+ D++G IS AHL ++D+ S+ C++LA
Sbjct: 999 DFSVEKQRIEWDPNEVDNLMREFYVQYLKLDSVGQISNAHLHNSDQ--YGLMSTVCMNLA 1056
Query: 921 TLHSMAVDFAKTGAPA--------------EMPLALKPKEFPDF-MEREDKPRYISFGVL 965
+S AVDF K+G P EM P+ PDF M E P+Y+S +
Sbjct: 1057 KKNSQAVDFTKSGIPPAEMTRDWRRDPITDEMVPPENPERIPDFHMGNERNPQYVSPRLC 1116
Query: 966 GKLYR--ATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNA 1023
G+L+R +D++++I +++ + D D+ + G+E F+ A + Y ++ +
Sbjct: 1117 GRLFREFQAIDNVIKISEE---KDELYDIEIDEDIMIYGYERFMVEARTELANYNGQLRS 1173
Query: 1024 LMNYYGASTEDEILTG---NLRNRASYLQRDNRRYGD----MKDRILLSAKNLQNEAKEW 1076
+M YG +TE EI++G +RNR S +D+ + + ++ R+ + + E
Sbjct: 1174 IMETYGIATEGEIMSGCIIEMRNRISDKDQDDMSFFNTNLMIETRVTTLICRFREKFFEQ 1233
Query: 1077 FG----------------SSC-------KENEHPQLASAWYHVTYSPSYCKERMALLSFP 1113
FG SSC N Q A AWY Y + LSF
Sbjct: 1234 FGGYQSCCSIIENADENNSSCLAYRCRSATNSMMQKAVAWYRACYEFAQSNRETRKLSFA 1293
Query: 1114 WIVGDILLNIK 1124
WIV D++ ++
Sbjct: 1294 WIVYDVIAKVR 1304
>gi|327354796|gb|EGE83653.1| RNA-dependent RNA polymerase [Ajellomyces dermatitidis ATCC 18188]
Length = 1240
Score = 285 bits (728), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 247/823 (30%), Positives = 388/823 (47%), Gaps = 113/823 (13%)
Query: 300 LSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLK------SICY 353
L ++V FQL LV N +S A + ++ + L E +V+Q L +L+ S
Sbjct: 321 LPYQVRFQLQKLVWNGDISPAKAISFASRVQAALVTENLDVVVQALMRLRQNIKWPSPDV 380
Query: 354 DPVSFVKTQLHVLGRNCKSIPLSSHK-----RLIDHNVMSCYRALVTPMKIYCLGPELET 408
+P + L RN + HK R + N +S +R VTP IY GP +E+
Sbjct: 381 EPSEVDVSALVATFRNALEAAVREHKMASTNRHTNPNHVSIHRVQVTPCGIYLDGPYMES 440
Query: 409 SNYVVKNFAKYASDFMRVTFVEEDWSKL---PANALSTSIQRGIFSKPYRTKIYSRILTI 465
N V++ +A + F+RV F++E + P ++ Q+ R +
Sbjct: 441 KNRVLRRYANHVDHFLRVEFMDESGDPVRYDPRASIDLIFQQ-------------RFKGV 487
Query: 466 LQDGIVIGDKHYEFLAFSASQLRNNSVWM----FASNDEVSAEDVRGWMGCFNKIRSVSK 521
L++GI I + +EFL FS S LR+ + W +A +A + +G F+ I S +K
Sbjct: 488 LKNGINIAGRKFEFLGFSHSSLRSQTCWFVAPFYADGILYNATTIIQNLGRFDHINSPAK 547
Query: 522 CAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCG 581
AAR+GQ FS + ++ + + + ++ DV+ N FSDG+G IS S + +
Sbjct: 548 QAARIGQTFSETLTSIPISEEIISVVQDVK----RNDRVFSDGVGTISPSVMYMIWKDYS 603
Query: 582 LSHT--PSAFQIRYG-GYKGVIAVD-RNSFRKLSLRRSMLKFESRNRM--LNVT---KWS 632
L P+ FQIR G KG++++D RN L LR SM+KF N+
Sbjct: 604 LRTMVKPTVFQIRIAAGAKGMVSLDSRNKGESLVLRPSMIKFPVTTSFNAYNIEICGSGI 663
Query: 633 ESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKN 692
S+P FLN ++I +L LGV VF +Q+ +++ L + A L+ N S
Sbjct: 664 RSLPFFLNAQLIKILEDLGVDGNVFLKLQRDEILRLRATATSTTQAAKFLEDTNIAKSVG 723
Query: 693 I--LVKML-LQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGIL 749
+ L+ +L G + + +L ++ +L DLK R RI VPK L G DETG L
Sbjct: 724 LPWLISILEALGLRHSDDEFLRRVMELVVLIKLRDLKYRARIRVPKAVTLFGIMDETGYL 783
Query: 750 NYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAV-YE 808
G++F L K + + ++ KV+VT++P +HPGDV++ +AV
Sbjct: 784 KEGEIFC------TSLSDKGR--------REVLLNPKVVVTRSPAMHPGDVQIAKAVDVP 829
Query: 809 MKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRS 868
+ +CI F Q G+R P+ SGGDLDGD++ + +++ LIP PP Y +
Sbjct: 830 ADSPLRQLHNCIAFSQHGDRDLPSMLSGGDLDGDLYNVIFEDTLIPRVISPPAQYPRVQE 889
Query: 869 RIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVD 928
+++D V ++I FFV +M D LG I+T H AD+ +CL LA LHS AVD
Sbjct: 890 KVLDRPVVRDDIIDFFVTFMQQDQLGRIATVHQTIADQKALGTFDPQCLLLAELHSTAVD 949
Query: 929 FAKTGAPAEMPLALK-PKEFPDF---------------MERED--------------KPR 958
F+K+G P ++ K P+ PDF +E D +P
Sbjct: 950 FSKSGVPVDLARIPKFPRYRPDFQAPGPRVRIAESLSLLEEHDQMTVLDDDDDEEDERPT 1009
Query: 959 ---YISFGVLGKLYRATLDSI--MQIRSNAI-WSEKIAEASYDHDL------EVDGF--E 1004
Y S +LGKLYRA +D + +Q R NAI S +A S + E GF +
Sbjct: 1010 ARYYKSEKILGKLYRA-IDEVEFLQHRQNAIERSMAMAAPSVLKGVWAFVQSETVGFLWD 1068
Query: 1005 AFLGVAESHKEMYEEEMNALMNYYGAS------TEDEILTGNL 1041
+ A +++YE+ + +M Y ++ TE E+ G +
Sbjct: 1069 HHVENALEIRQIYEDNLLEIMARYSSTPWKSSITEYEVFVGTI 1111
>gi|299470095|emb|CBN78124.1| RNA-dependent RNA polymerase 1 [Ectocarpus siliculosus]
Length = 1102
Score = 284 bits (727), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 237/778 (30%), Positives = 347/778 (44%), Gaps = 122/778 (15%)
Query: 300 LSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSFV 359
L + V F + L + K+ + E + +L+ E A + L+ +L+ P +
Sbjct: 181 LPYSVKFLIECLTSSLKIDAFGVNEEAVSLLAMAGEERACLALRA--RLEDT---PSQEI 235
Query: 360 KTQLHVLGR-NCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAK 418
L G N + + + I NVM RA VTP+++ C PE E SN V + FA+
Sbjct: 236 LQWLEGYGPYNGAVYGVGEYGKEIG-NVM-VPRASVTPLRVVCQPPEQEMSNGVTRRFAE 293
Query: 419 YASDFMRVTFVEEDWSKL---PANALSTSIQRGIFSKPY--RTKIYSRILTILQDGIVIG 473
++ F+ V FV+E+ +L P A S G+ P+ R + + ++ L V+
Sbjct: 294 HSDRFLGVNFVDENMGRLQLSPLLAPSDCWSIGLACTPFGQRHQTFLKVHPALLVSCVVL 353
Query: 474 DKHYEFLAFSASQLRNNSVWMFASNDEV-------SAEDVRGWMGCFNKIRSVSKCAARM 526
+ SQLR ++ + +A EV S V WMG + I V K AAR+
Sbjct: 354 SPP---VRPRKSQLRGHACFFYAEGGEVDQISESGSEPAVFHWMGDMSGIDVVGKHAARL 410
Query: 527 GQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHT- 585
GQ SS+ T+ VP +++PD + Y F+DG G +S AR+VA G S +
Sbjct: 411 GQSLSSTTSTVEVPPALKKLVPDKKA----GPYEFTDGCGMMSEGLAREVADVLGHSVSQ 466
Query: 586 --PSAFQIRYGGYKGVIAV----------DRNSFRKLSLRRSMLKFESRNRMLNVTKWSE 633
PSAFQIR GG KG++AV R ++ L +R SM KF S L V +++
Sbjct: 467 PPPSAFQIRMGGCKGMLAVWPDSVMRSVSGRGGYKVL-VRPSMQKFPSERNTLEVIQYAR 525
Query: 634 SMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLIN-----REAALDVLQKLNGV 688
+PC+LNR+ I+LL TLGV D+V E + L K+L EA + +++ N
Sbjct: 526 QLPCYLNRQFITLLGTLGVPDKVIEERYSAMVSTLDKVLRTMLSDPAEAEMALVRYYNIT 585
Query: 689 DSKNILVK----------MLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRL 738
K M+ G EP+L +L + + + DL+ R RI+VP
Sbjct: 586 SGGKTGRKQVGPLWEALAMVRAGINIRTEPFLQSVLHATRDKAMIDLRHRTRIFVPDASC 645
Query: 739 LIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPG 798
L+G DETG L GQ + +S H ++ SI+
Sbjct: 646 LLGIVDETGFLQPGQASDSLGC---------RSVNHYTANRASIMT-------------- 682
Query: 799 DVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETE 858
+ C P P++ SGGDLDGD++ + WD DL+P E E
Sbjct: 683 -------------NADRFGQCT--------PEPSKMSGGDLDGDLYSVVWDQDLLPPERE 721
Query: 859 ---------------PPMDY-----TGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAIST 898
P M Y + V ++EI FF+ Y+ ND LG I+
Sbjct: 722 GVAGVQGDSENGFNFPAMGYEPPEKPKTSASSSGKGVDMKEIADFFLKYIQNDNLGKIAN 781
Query: 899 AHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPR 958
AHLV AD P AR +CL LA LHS AVDF K+G PA P LK +PDFM +ED
Sbjct: 782 AHLVRADLSPLGARCDECLQLAALHSKAVDFPKSGVPAVFPDELKVDSYPDFMCKEDNMT 841
Query: 959 YISFGVLGKLYRAT--LDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHK 1014
Y+S ++G+L+R T + R + D L G+E FL AE +
Sbjct: 842 YLSKKLIGRLFRDTPPAGAANPQRRQQQDERFLGGFELDQSLLAPGYEDFLEEAEVER 899
>gi|212537491|ref|XP_002148901.1| RNA-dependent RNA polymerase, putative [Talaromyces marneffei ATCC
18224]
gi|210068643|gb|EEA22734.1| RNA-dependent RNA polymerase, putative [Talaromyces marneffei ATCC
18224]
Length = 1207
Score = 283 bits (725), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 217/715 (30%), Positives = 346/715 (48%), Gaps = 97/715 (13%)
Query: 285 TSEIVPLVKCRPGFNLSHEVLFQLNSLVHNQKV-------------SLVAADAELI--QI 329
T++++ K +N V FQL LV N ++ +L+A L+ +I
Sbjct: 302 TTQLIAFFKVLSMWNFPFAVQFQLQMLVSNGELPPEKVTTLFPYVNTLLARKRPLVAAKI 361
Query: 330 LSGL----------------SMETALMVLQKLHKLKSICY-DPVSFVKTQLHVLGRNCKS 372
+ GL S++T + L+K+ +++++ Y P
Sbjct: 362 IKGLPRRLHHPDPHADSADVSLDTIIDTLEKIEEMQALEYLQP----------------- 404
Query: 373 IPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEED 432
+ +N M +R VTP +Y GP +E N V++ + + F+RV F+EE
Sbjct: 405 ----GQPGYLHYNQMEIHRLSVTPTGLYLDGPNVEAENRVLRKYRNQSDQFIRVRFIEES 460
Query: 433 WSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSV 492
L + +S+++ I+ R +L+DG++I D+HY FL FS S LR+ S
Sbjct: 461 GDPLMYD-ISSNLD----------PIFDRFREVLRDGVIIADRHYRFLGFSHSSLRSRSC 509
Query: 493 WMFAS-NDEVSAEDVR-----GWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEM 546
W A +D V+ E + +G F+ I++ SK AAR+GQ FS + ++ V V+
Sbjct: 510 WFMAEFHDSVTGEFITVNKLISKLGDFDHIKAPSKFAARLGQTFSDTLTSISVDKDMVKR 569
Query: 547 IPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHT--PSAFQIRYGGYKGVIAVDR 604
I DVE N FSDG G IS ++ + + P+ FQ+R G KG++++D
Sbjct: 570 IDDVE----RNGRVFSDGCGTISKEILWRIYRDYPRNAAVRPTVFQVRISGAKGMLSLDP 625
Query: 605 N-SFRKLSLRRSMLKF--ESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQ 661
+ LR SM+KF E+ N + S+PC+LN +I +L LGV ++F +Q
Sbjct: 626 TLKGPTICLRDSMIKFRAEADNNIEICGSGIHSLPCYLNAPLIKILEDLGVPRDLFLELQ 685
Query: 662 QQQLILLGKMLINREAALDVLQKLNGVDSKNI--LVKMLLQ-GYEPNVEPYLSMMLLSHH 718
++++ L + + + + A L + + S + L+ +L G N + +L +
Sbjct: 686 REEVESLRQTVRSPQHAAVFLDQAHISKSTRLSWLITLLQSMGVNYNQDGFLKRAVELVI 745
Query: 719 ENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDD 778
+L DLK + RI VP G L G DETG L G++FV + EE + +D
Sbjct: 746 LMKLRDLKYKARILVPDGVTLYGIMDETGYLKEGEIFV--PILNEETKRRD--------- 794
Query: 779 KTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEE-KDYVDCIIFPQKGERPHPNECSGG 837
+V+ VL+T++P HPGDV++ AV + + +C++F QKG R P++ SGG
Sbjct: 795 --ILVQDDVLITRSPAFHPGDVQLANAVNVPEDSPLRKLHNCVVFSQKGTRDLPSQLSGG 852
Query: 838 DLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAIS 897
DLDGDIF I +D P DY + V +++I FFV +M D LG I+
Sbjct: 853 DLDGDIFNIIYDPRFRLRRLAKPADYPRVPGTELGRPVQIDDIQDFFVTFMQQDQLGRIA 912
Query: 898 TAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALK-PKEFPDFM 951
T H + AD+ CL LA LHS AVDF+KTG P ++ + + P PDFM
Sbjct: 913 TTHKILADQQVKGTFDPNCLTLAQLHSTAVDFSKTGTPVDIKMIPRYPPYRPDFM 967
>gi|226291786|gb|EEH47214.1| predicted protein [Paracoccidioides brasiliensis Pb18]
Length = 1257
Score = 282 bits (722), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 225/758 (29%), Positives = 356/758 (46%), Gaps = 158/758 (20%)
Query: 392 ALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEE-DWSKLPANALSTSIQRGIF 450
A VTP IY P ++T N + + + +YA F+RV F +E + K+ + + +
Sbjct: 406 AEVTPSTIYYKPPSIDTGNRIFRRYLEYADRFLRVRFTDEKNMGKIFPYSNANIV----- 460
Query: 451 SKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWM 510
++Y+R+ +++GI IGD+ YEFLAFS +QLR ++ + FAS ++A ++
Sbjct: 461 ---CMNEVYTRVTLTMKNGITIGDRCYEFLAFSNAQLREHAAYFFASLPHLTAANI---- 513
Query: 511 GCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISL 570
+V + D+E N Y FSDG+G IS
Sbjct: 514 -------------------------LQIVEIDDIER----------NGYTFSDGVGLISK 538
Query: 571 SFARQVAQKCGL----SHTPSAFQIRYGGYK----GVIAVDRNSFRKLSLRRSMLKFESR 622
A+ + + + PS FQ R GG K G+ + +SF
Sbjct: 539 FLAQMIQSEFAIETLSGEPPSVFQFRLGGCKAPHNGLEIIRHSSF--------------- 583
Query: 623 NRMLNVTKWSESMPCF--LNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALD 680
CF LNR++I +LS+LG+ DE+F Q L L + ++E A+D
Sbjct: 584 --------------CFASLNRQLIIVLSSLGIPDEMFVKKLQAMLENLELAMTSQEQAID 629
Query: 681 VLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLI 740
+LQ +PN M L+ L+D+ G L+
Sbjct: 630 LLQTY----------------VDPN-----QMTLV------LADM----------GAFLL 652
Query: 741 GCFDETGILNYGQVFVRV------TMTREELESKDQSFFH--RVDDKT-SIVKGKVLVTK 791
GC DETG L + + R ++L+ + F R + T +++G ++ +
Sbjct: 653 GCLDETGSL---KGYFRSKRPGGGATYEQKLDCLPEIFVQISRHSEGTYEVIEGLCILAR 709
Query: 792 NPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDND 851
NP LHPGD+RV++AV L D ++ PQ G+R + CSGGDLDGD + + WD D
Sbjct: 710 NPSLHPGDIRVVKAVDIPGLHHLK--DVVVLPQTGDRDIASMCSGGDLDGDDYVVIWDQD 767
Query: 852 LIPCE-TEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDK 910
L+P + E PMDY+ +S+++D DVT+++I KFFV YM ND L I+ AHL AD D
Sbjct: 768 LLPKDWFEEPMDYSAPKSKVLDRDVTVDDIIKFFVSYMQNDRLPQIALAHLTIADYSDDG 827
Query: 911 ARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMERE---DKPRYISFGVLGK 967
+ KCL LATLHS AVD+ K+G P M L+PK++P FMER+ +Y S +LG+
Sbjct: 828 VQDEKCLRLATLHSAAVDYNKSGIPVRMNQDLRPKKWPHFMERKFAMKDSQYTSRKILGQ 887
Query: 968 LYRATLDSIMQIRSNAI-----WSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMN 1022
LY + ++S++ + ++I A+++ D E L A+ K Y+ ++
Sbjct: 888 LYDIAGGVYLNLQSHSAKGRLPFDQRILNANFEID------EKLLSFAKELKGEYDADLR 941
Query: 1023 ALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSCK 1082
+M + +ED + +S L++ R K K+ ++ A
Sbjct: 942 RIMAQHEIQSEDYKFHEEIGRISSALRQKFRMLCHEK----AGGKDFKSLAPLAIAMYRV 997
Query: 1083 ENEHPQLASAWYHVTYSPSYCKERMALLSFPWIVGDIL 1120
+E + A A H +P +ERM L+SFPW++ IL
Sbjct: 998 TSEQMEKAKAAAHSHCTPGE-EERMPLISFPWVLQPIL 1034
>gi|268563038|ref|XP_002638736.1| C. briggsae CBR-EGO-1 protein [Caenorhabditis briggsae]
Length = 1631
Score = 281 bits (720), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 225/853 (26%), Positives = 391/853 (45%), Gaps = 153/853 (17%)
Query: 391 RALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIF 450
+ + TP ++ + PE N V++ + + +R+TF ++D K+ N ST +++ +
Sbjct: 493 KIIFTPTRVIYVAPETLMGNRVLRRYDHDGTRVLRITFRDDDNQKMRTNKTSTLLEKTVN 552
Query: 451 SKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFAS------------- 497
T L +GI + +++ +L S SQ+R+N +
Sbjct: 553 -------------TYLMNGITVAGRNFGYLGSSNSQMRDNGAYFMEKYSSSQCREYEKMC 599
Query: 498 --------NDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLV-------VPVQ 542
N ++ A R +G F I ++ K AR+GQ F+ S+ + V V +
Sbjct: 600 RMAPPITFNPKIQA--ARKNLGRFETIDNIPKMMARLGQCFTQSRLSGVNLDRCTYVTMY 657
Query: 543 DVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSH-TPSAFQIRYGGYKGVIA 601
D+ +++ G+ Y FSDG+G +S++FA+ V+Q PS FQ R+ G KGVIA
Sbjct: 658 DLTGGKNIK----GDEYTFSDGVGMMSMNFAQMVSQVMDFGKGVPSCFQFRFRGMKGVIA 713
Query: 602 VD-----------RNSFRKLS----------LRRSMLKFESRNR---MLNVTKWSESMPC 637
V+ N +++S R S +KF S+ + + K+S +P
Sbjct: 714 VEPFLDDLRQWSIENDIQEVSEDTAWGLNCVFRPSQIKFISKRHPRDQVEIVKYSSPVPV 773
Query: 638 FLNREIISLLSTLGVKDEV---------FEAMQQQQLILLGKMLINREAALDVLQKLNGV 688
LN+ I++L + + E + +Q++ + +I+ + L++L
Sbjct: 774 SLNKPFINILDQVSEMQSLECHRRVTNRIEELLDRQMLSFAQQMIDETFCRNRLKEL--- 830
Query: 689 DSKNILVKMLLQ--GYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPK--GRLLIGCFD 744
+ I + L G+ + EP+ ++ + + ++ + +I +P GR ++G D
Sbjct: 831 -PRRIDIDYLRTTWGFTLSSEPFFRSLIKASIKFSITKQLRKEQIPIPADLGRSMLGVVD 889
Query: 745 ETGILNYGQVFVRVTMTRE-ELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVL 803
ETG L YGQ+FV+ T +L K S S++ G VL+TKNPC+ GDVR+
Sbjct: 890 ETGRLQYGQIFVQYTRNLALKLPPKSAS--------RSVLTGTVLLTKNPCIVAGDVRIF 941
Query: 804 EAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDY 863
EAV +L D ++FPQ G RPHP+E +G DLDGD + I WD L+ E P D+
Sbjct: 942 EAVDIPELHH--MCDVVVFPQHGPRPHPDEMAGSDLDGDEYSIIWDQQLLLDRNEDPFDF 999
Query: 864 TGRRSRIMDHDVTLEEIHK-FFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATL 922
T + + + ++++ + F+V Y+ D++G IS +HL ++D+ AR C+ LA
Sbjct: 1000 TSEKQKSSFKEEEIDDLMREFYVKYLKLDSVGTISNSHLHNSDQYGLNARV--CMDLAKK 1057
Query: 923 HSMAVDFAKTGAP--------------AEMPLALKPKEFPDF-MEREDKPRYISFGVLGK 967
+ AVDF K+G P EM + + PD+ M + P Y+S + GK
Sbjct: 1058 NCQAVDFTKSGQPPEELERKWRKDEVTGEMIPPERAERVPDYHMGNDHTPMYVSPRLCGK 1117
Query: 968 LYR--ATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALM 1025
L+R +D +++I ++ E + D + VDG++ ++ A Y ++ ++M
Sbjct: 1118 LFREFKAIDDVLKISEE---RDEQVEITIDETIMVDGYKEYMHSAREDLARYNAQLRSMM 1174
Query: 1026 NYYGASTEDEILTG---NLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWF----- 1077
YG TE E+ +G ++RNR S +D+ + + I NL + +E F
Sbjct: 1175 ENYGIKTEGEVFSGCIVDMRNRISDKDQDDMSFYNTNQMIETKVTNLYKKYREHFFEEFE 1234
Query: 1078 --------GSSCKENEHPQL--------------ASAWYHVTYSPSYCKERMALLSFPWI 1115
G+S E++ L A AWY Y + LSF W+
Sbjct: 1235 GAWEANTEGTSRGESDTNILQRHCRAPTQNMMKKAVAWYRACYEEARVTRENKKLSFAWL 1294
Query: 1116 VGDILLNIKSVNS 1128
+ D+L +K S
Sbjct: 1295 MYDVLAMVKQTKS 1307
>gi|326484092|gb|EGE08102.1| RNA-dependent RNA polymerase [Trichophyton equinum CBS 127.97]
Length = 1207
Score = 281 bits (719), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 260/912 (28%), Positives = 406/912 (44%), Gaps = 133/912 (14%)
Query: 300 LSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSFV 359
+ V FQL LV N ++SL A L + +V Q L ++ P V
Sbjct: 319 FDYRVKFQLLKLVWNGELSLDQASLLLPTVHRLHQQHPPDIVAQALMRIDGNSVYPSPGV 378
Query: 360 -------KTQLHVLGRNCKSIPLSSHK---RLIDHNVMSCYRALVTPMKIYCLGPELETS 409
+ L +N +I + + L+ + +RA VTP IY GP ET
Sbjct: 379 LASDASMEALTETLEKNLDTILKARTEWDINLMHEKNVLVHRATVTPAGIYLSGPYAETK 438
Query: 410 NYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDG 469
N +++ + F+RV F++E + + + Q IF + R +++ G
Sbjct: 439 NRILRKYLDNIDYFIRVEFLDETGDPVFFDPSANLEQ--IF--------HQRFAGVMKRG 488
Query: 470 IVIGDKHYEFLAFSASQLRNNSVWMFA-----SNDEVSAEDVRGWMGCFNKIRSVSKCAA 524
I + +EFL FS S LR + W A + D ++A + G +G F+ IRS SK AA
Sbjct: 489 FEIAGREFEFLGFSHSSLRAQTCWFAAPFTTANGDHLNARTIIGNIGYFDHIRSPSKQAA 548
Query: 525 RMGQLFSSSKQTLVVPVQDVEM-IPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLS 583
R+GQ FS + ++ V + V M PDV+ N FSDG+G IS ++ + L
Sbjct: 549 RIGQAFSDTLTSISVSKEVVWMKAPDVK----RNDRIFSDGVGVISRDLMYRIWNEYALR 604
Query: 584 H--TPSAFQIRYGGYKGVIAVD-RNSFRKLSLRRSMLKFESRNRMLNVT---KWSESMPC 637
P+ FQIR G KG++++D R L LR SM+KF + + + N+ ++P
Sbjct: 605 ERVKPTVFQIRIAGAKGMVSLDTRRKGEFLMLRESMVKFPTDD-LYNIEICGAGIRALPF 663
Query: 638 FLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKM 697
+LN +II +L LGV E F +QQ ++ L + E A L+ S +
Sbjct: 664 YLNNQIIKILEDLGVPFEAFHQIQQDEINFLYSTFNSTERAAKFLEDSPVPRSLRLPWLF 723
Query: 698 LLQ---GYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQV 754
L+ G +P+L ++ +L DLK R RI VP L G DETG L ++
Sbjct: 724 LVLKGLGIRYTQDPFLKRVMELTTLLRLRDLKYRARIRVPNAVTLYGIMDETGYLKENEI 783
Query: 755 FVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAV-YEMKLEE 813
+ + + +V+ KV++T++P LHPGD++V+ AV
Sbjct: 784 YC--------------VYLGENGRREILVRDKVVITRSPALHPGDIQVVNAVDVPENSPL 829
Query: 814 KDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDH 873
+ +C+ F Q G+R P+ SGGDLDGD++ I +D L+P +T PP +Y ++ +D
Sbjct: 830 RKLHNCVAFSQHGDRDLPSMLSGGDLDGDLYNIIYDTRLVPRKTIPPANYPRVEAKELDR 889
Query: 874 DVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTG 933
V E+I FFV +M D LG I+T H AD+ CL LA LHS+AVD++K+G
Sbjct: 890 KVETEDIVDFFVTFMQQDQLGRIATTHQTIADQSELGTLDQACLKLAHLHSVAVDYSKSG 949
Query: 934 -APAEMPLALKPKEFPDFMEREDKPR---------------------------------- 958
A + + P+ PDFM + R
Sbjct: 950 IAVNVLSIPRAPRVRPDFMAPSPRFRVADSIESIIGEKNSAMQDDDDDDEDDSDRRKIRY 1009
Query: 959 YISFGVLGKLYRATLDS--IMQIRSNAIWSEK----IAEASYDHDL-EVDGF--EAFLGV 1009
Y S +LG+LYR+ + + Q+R K + + +++ L EVDGF G+
Sbjct: 1010 YKSNNILGRLYRSIDERSFLCQLRDVGAADTKTNTDVLRSIWNYVLSEVDGFLWTHLTGI 1069
Query: 1010 AESHKEMYEEEMNALMNYYGAS------TEDEILTGNLRNRAS-YLQRDNRRYGDMKDR- 1061
+++YE+E+ LM Y A+ TE E+ G + + +RD +M+D
Sbjct: 1070 FHDTRDIYEDELRELMRKYSATPLKSSITEYELFVGTILGHGNKQRRRDKDNAKEMRDEY 1129
Query: 1062 ---------ILLSAKNLQNEAKE------WFGSSCKEN-EHPQLASAWYHVTYSPSYCKE 1105
++ ++ EA E W K + + P L SA H
Sbjct: 1130 NRLVEFTISMIRDTESGGTEALERSIACFWVAIDGKSSGQKPGLRSAHAH---------- 1179
Query: 1106 RMALLSFPWIVG 1117
+ LLSFPWI
Sbjct: 1180 QDKLLSFPWIAA 1191
>gi|326476492|gb|EGE00502.1| hypothetical protein TESG_07807 [Trichophyton tonsurans CBS 112818]
Length = 1207
Score = 281 bits (719), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 260/912 (28%), Positives = 406/912 (44%), Gaps = 133/912 (14%)
Query: 300 LSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSFV 359
+ V FQL LV N ++SL A L + +V Q L ++ P V
Sbjct: 319 FDYRVKFQLLKLVWNGELSLDQASLLLPTVHRLHQQHPPDIVAQALMRIDGNSVYPSPGV 378
Query: 360 -------KTQLHVLGRNCKSIPLSSHK---RLIDHNVMSCYRALVTPMKIYCLGPELETS 409
+ L +N +I + + L+ + +RA VTP IY GP ET
Sbjct: 379 LASDASMEALTETLEKNLDTILKARTEWDINLMHEKNVLVHRATVTPAGIYLSGPYAETK 438
Query: 410 NYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDG 469
N +++ + F+RV F++E + + + Q IF + R +++ G
Sbjct: 439 NRILRKYLDNIDYFIRVEFLDETGDPVFFDPSANLEQ--IF--------HQRFAGVMKRG 488
Query: 470 IVIGDKHYEFLAFSASQLRNNSVWMFA-----SNDEVSAEDVRGWMGCFNKIRSVSKCAA 524
I + +EFL FS S LR + W A + D ++A + G +G F+ IRS SK AA
Sbjct: 489 FEIAGREFEFLGFSHSSLRAQTCWFAAPFTTSNGDHLNARTIIGNIGYFDHIRSPSKQAA 548
Query: 525 RMGQLFSSSKQTLVVPVQDVEM-IPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLS 583
R+GQ FS + ++ V + V M PDV+ N FSDG+G IS ++ + L
Sbjct: 549 RIGQAFSDTLTSISVSKEVVWMKAPDVK----RNDRIFSDGVGVISRDLMYRIWNEYALR 604
Query: 584 H--TPSAFQIRYGGYKGVIAVD-RNSFRKLSLRRSMLKFESRNRMLNVT---KWSESMPC 637
P+ FQIR G KG++++D R L LR SM+KF + + + N+ ++P
Sbjct: 605 ERVKPTVFQIRIAGAKGMVSLDTRRKGEFLMLRESMVKFPTDD-LYNIEICGAGIRALPF 663
Query: 638 FLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKM 697
+LN +II +L LGV E F +QQ ++ L + E A L+ S +
Sbjct: 664 YLNNQIIKILEDLGVPFEAFHQIQQDEINFLYSAFNSTERAAKFLEDSPVPRSLRLPWLF 723
Query: 698 LLQ---GYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQV 754
L+ G +P+L ++ +L DLK R RI VP L G DETG L ++
Sbjct: 724 LVLKGLGIRYTQDPFLKRVMELTTLLRLRDLKYRARIRVPNAVTLYGIMDETGYLKENEI 783
Query: 755 FVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAV-YEMKLEE 813
+ + + +V+ KV++T++P LHPGD++V+ AV
Sbjct: 784 YC--------------VYLGENGRREILVRDKVVITRSPALHPGDIQVVNAVDVPENSPL 829
Query: 814 KDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDH 873
+ +C+ F Q G+R P+ SGGDLDGD++ I +D L+P +T PP +Y ++ +D
Sbjct: 830 RKLHNCVAFSQHGDRDLPSMLSGGDLDGDLYNIIYDTRLVPRKTIPPANYPRVEAKELDR 889
Query: 874 DVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTG 933
V E+I FFV +M D LG I+T H AD+ CL LA LHS+AVD++K+G
Sbjct: 890 KVETEDIVDFFVTFMQQDQLGRIATTHQTIADQSELGTLDQACLKLAHLHSVAVDYSKSG 949
Query: 934 -APAEMPLALKPKEFPDFMEREDKPR---------------------------------- 958
A + + P+ PDFM + R
Sbjct: 950 IAVNVLSIPRAPRVRPDFMAPSPRFRVADSIESIIGEKNSAMQDDDDDDEDDSDRRKIRY 1009
Query: 959 YISFGVLGKLYRATLDS--IMQIRSNAIWSEK----IAEASYDHDL-EVDGF--EAFLGV 1009
Y S +LG+LYR+ + + Q+R K + + +++ L EVDGF G+
Sbjct: 1010 YKSNNILGRLYRSIDERSFLCQLRDVGAADTKTNTDVLRSIWNYVLSEVDGFLWTHLTGI 1069
Query: 1010 AESHKEMYEEEMNALMNYYGAS------TEDEILTGNLRNRAS-YLQRDNRRYGDMKDR- 1061
+++YE+E+ LM Y A+ TE E+ G + + +RD +M+D
Sbjct: 1070 FHDTRDIYEDELRELMRKYSATPLKSSITEYELFVGTILGHGNKQRRRDKDNAKEMRDEY 1129
Query: 1062 ---------ILLSAKNLQNEAKE------WFGSSCKEN-EHPQLASAWYHVTYSPSYCKE 1105
++ ++ EA E W K + + P L SA H
Sbjct: 1130 NRLVEFTISMIRDTESGGTEALERSIACFWVAIDGKSSGQKPGLRSAHAH---------- 1179
Query: 1106 RMALLSFPWIVG 1117
+ LLSFPWI
Sbjct: 1180 QDKLLSFPWIAA 1191
>gi|400598650|gb|EJP66359.1| RNA dependent RNA polymerase [Beauveria bassiana ARSEF 2860]
Length = 1260
Score = 281 bits (718), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 231/755 (30%), Positives = 350/755 (46%), Gaps = 117/755 (15%)
Query: 389 CYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRG 448
++A+V P +I+ GP+ E+ N V++ F + F+RVTF +ED L N ++
Sbjct: 443 VFKAMVAPTRIFLQGPDPESRNRVLRMFPDHGDYFLRVTFCDEDGQDLSFNPRVSN---- 498
Query: 449 IFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFAS-----NDEVSA 503
IY R +L GI I + + FL FS S LR++S W A S
Sbjct: 499 -------DAIYERYRQVLIKGIRIAGRQFSFLGFSHSSLRSHSTWFMAPFVGADGQRQSR 551
Query: 504 EDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQT--LVVPVQDVEMIPDVEVTSDGNTYCF 561
+ + +G F+ IR +KCAAR+GQ FS + L V IPDV+ ++DG F
Sbjct: 552 DTILAALGDFSDIRIPAKCAARIGQAFSETPYAVDLFKSGIGVRWIPDVK-SADGER-VF 609
Query: 562 SDGIGKISLSFARQVAQKC-GLSHTPSAFQIRYGGYKGVIAVD-RNSFRKLSLRR-SMLK 618
SDG+G +S + + + G S T + FQIR+ G KG++ +D R + + +R+ SM+K
Sbjct: 610 SDGVGTLSRAAVEEFCKALPGRSTTATCFQIRWAGVKGLLVLDTRLQGKVICVRKESMMK 669
Query: 619 FESRN-RMLNVTKW-SESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINRE 676
F S++ + L + S + LNR++I +L +G +D F A+Q L L +
Sbjct: 670 FPSQDLQELGICDLASRPLRLVLNRQVIKILEDMGTRDSWFLALQHDALEFLRAVTATAL 729
Query: 677 AALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHEN----QLSDLKSRCRIY 732
LQ + S L + Q + +++ L S E+ +L LK + RI
Sbjct: 730 NTSTFLQ-YQDIGSAIGLSSFIKQLDKMDIDYRRDAFLKSVVEHVVLRELRLLKHKARIP 788
Query: 733 VPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKN 792
V KG L G DETG L QV+V TR + R+D T++ G ++VT++
Sbjct: 789 VHKGVTLFGVMDETGFLQENQVYVTYDATRGKSG-------ERLD--TTLTDGPIIVTRS 839
Query: 793 PCLHPGDVRVLEAVYEMKLEE-KDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDND 851
P LHPGD++ ++ V + + +CI+F QKG R P++ SGGDLDGD++ I WD
Sbjct: 840 PALHPGDIQYVQMVTPPESHPLRSLRNCIVFSQKGSRDLPSQLSGGDLDGDLYNIIWDPR 899
Query: 852 LIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKA 911
P T P DYT +D VT ++I FFVD+M +D LG I+ H + AD
Sbjct: 900 ARPQWTFAPADYTRVVPPSLDRPVTRQDIADFFVDFMKSDILGLIAIRHQIMADVQDLGT 959
Query: 912 RSSKCLHLATLHSMAVDFAKTGAPA---EMPLALKPKEFPDFM----------------- 951
+ +C+ LA +HS AVD++KTG ++P A P+ PDF+
Sbjct: 960 QDGECIRLAEMHSTAVDYSKTGIAVNWRDLPRA--PRSRPDFLAPAPPLHLYDLGQIGHI 1017
Query: 952 -ERED---------KPRY-ISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEV 1000
E +D KPRY S +LG+LYR +I IWSE I +
Sbjct: 1018 AEEDDDDGNDMALAKPRYHRSEKILGRLYR-------EIDEGKIWSEDIHRP-----IPT 1065
Query: 1001 DGFEAFL-------------GVAESHKEMYEEEMNALMNYYGAST--------------- 1032
DG ++ + + YE+ N Y A T
Sbjct: 1066 DGPSVWVQLLGRVQYELNSWNIGTDYARHYEQAWNIRTLYEDAITGSMWHFSDNPRSPVS 1125
Query: 1033 EDEILTGNLRNRASYLQRDNR----RYGDMKDRIL 1063
E E+ G++ N+ R R R D DR++
Sbjct: 1126 EAEVFCGSILNKRGVQSRQQREASIRLKDEIDRVM 1160
>gi|315045169|ref|XP_003171960.1| RNA-dependent RNA polymerase 1 [Arthroderma gypseum CBS 118893]
gi|311344303|gb|EFR03506.1| RNA-dependent RNA polymerase 1 [Arthroderma gypseum CBS 118893]
Length = 1204
Score = 281 bits (718), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 257/919 (27%), Positives = 410/919 (44%), Gaps = 140/919 (15%)
Query: 300 LSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSFV 359
+ V FQL LV N +SL A + T +V Q L +L P V
Sbjct: 319 FDYRVNFQLQKLVWNGDLSLNQASLLFPTVHRLHRQHTPDIVAQALIRLGQNQLYPSPGV 378
Query: 360 -------KTQLHVLGRNCKSIPLSSHK---RLIDHNVMSCYRALVTPMKIYCLGPELETS 409
+T + L ++ +I + + LI + +RA+VTP IY GP ET
Sbjct: 379 LASDVGIETIVEALEKSIDAIVTAGSEWEINLIPEKSVLVHRAMVTPCGIYLSGPYTETK 438
Query: 410 NYVVKNFAKYASDFMRVTFVEEDWSKL---PANALSTSIQRGIFSKPYRTKIYSRILTIL 466
N +++ + F+RV F++E + P+ L + IF + R ++
Sbjct: 439 NRILRKYLDNIDYFIRVEFLDETGDPVFFDPSANLES-----IF--------HQRFAGVM 485
Query: 467 QDGIVIGDKHYEFLAFSASQLRNNSVWMFA-----SNDEVSAEDVRGWMGCFNKIRSVSK 521
+ GI I + +E+L FS S LR+ + W A + D + A+ + G +G F+ IRS SK
Sbjct: 486 KRGIEIAGRVFEYLGFSHSSLRSQTCWFAAPFTTANGDYLDAKTIIGNIGHFDHIRSPSK 545
Query: 522 CAARMGQLFSSSKQTLVVPVQDVEM-IPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKC 580
AAR+GQ FS + ++ V + V+M PDV+ N FSDG+G IS ++ +
Sbjct: 546 QAARIGQAFSDTLTSISVSKEVVKMKAPDVK----RNGRVFSDGVGVISRELMYRIWNEY 601
Query: 581 GLSH--TPSAFQIRYGGYKGVIAVD-RNSFRKLSLRRSMLKFESRNRMLNVT---KWSES 634
L P+ FQIR G KG++++D R L LR SM+KF + + + N+ +
Sbjct: 602 ALRERVKPTVFQIRIAGAKGMVSLDTRKKGEFLMLRESMVKFPTDD-LYNIEICGAGIRA 660
Query: 635 MPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNIL 694
+P +LN +II +L LGV E F +QQ ++ L + E A + L++ S +
Sbjct: 661 LPFYLNNQIIKILEDLGVPFEAFHQLQQDEISFLYSTFSSIERAANFLEESPVPRSLRLP 720
Query: 695 VKMLLQ---GYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNY 751
+L+ G + +P+L ++ +L DLK R RI VP L G DETG L
Sbjct: 721 WLLLVLKSLGIRYSQDPFLQRVMELTMLLRLRDLKYRARIRVPNAVTLYGIMDETGYLKE 780
Query: 752 GQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAV-YEMK 810
+++ + + +V+ V++T++P LHPGDV+V AV
Sbjct: 781 NEIYC--------------VYLAENGRREILVRDNVVITRSPALHPGDVQVANAVDVPAN 826
Query: 811 LEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRI 870
+ +C+ F Q G R P+ SGGDLDGD++ I +D L+P +T P DY ++
Sbjct: 827 SPLRKLHNCVAFSQFGTRDLPSMLSGGDLDGDLYNIIYDTRLLPQKTFSPADYPRAEAKE 886
Query: 871 MDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFA 930
+D V E+I FFV +M D LG I+ H AD+ CL LA LHS AVD++
Sbjct: 887 LDRKVETEDIIDFFVTFMQQDQLGRIAITHQAIADQSERGTLDGVCLTLARLHSTAVDYS 946
Query: 931 KTGAPAE-MPLALKPKEFPDFMEREDKPR------------------------------- 958
K+G + M + P+ PDFM + R
Sbjct: 947 KSGIAVDVMSIPKAPRVRPDFMAPSPRIRVEDSIESILREKESTVQDDDDDDNDRAKIRY 1006
Query: 959 YISFGVLGKLYRATLDS--IMQIRS-------------NAIWSEKIAEASYDHDLEVDGF 1003
Y S +LG+LYR+ + + Q+R +IW + E+ EVDGF
Sbjct: 1007 YKSHNILGRLYRSIDEQSFLHQLRDAGAVDNNNRNSVLKSIW--RYVES------EVDGF 1058
Query: 1004 --EAFLGVAESHKEMYEEEMNALMNYYGAS------TEDEILTGNLRNRA-SYLQRDNRR 1054
G+ K++YE+++ L++ Y ++ +E E+ G + +RD
Sbjct: 1059 LWNHLTGICHDIKDIYEDKLRELLHKYSSTPLKSSISEYELFVGTILGHGHKQRRRDKEN 1118
Query: 1055 YGDMKD---RILLSAKNLQNEAKEWFGSSCKENEHPQLASAWYHVTYSPSYCKERM---- 1107
+M+D R++ ++ + + S E +A W + + K +
Sbjct: 1119 ANEMRDEYNRLVEFTISMIRDTE----SGGTEALERSIACFWVAINEQSAGQKAGLRSAH 1174
Query: 1108 ----ALLSFPWIVGDILLN 1122
LLSFPWI L+
Sbjct: 1175 THQEKLLSFPWIAAMTCLD 1193
>gi|397600982|gb|EJK57779.1| hypothetical protein THAOC_22138 [Thalassiosira oceanica]
Length = 1292
Score = 281 bits (718), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 254/876 (28%), Positives = 399/876 (45%), Gaps = 192/876 (21%)
Query: 391 RALVTPMKIYCLGPELETSNYVVKNFAK----YASDFMRVTFVEEDWSKLPANALSTSIQ 446
R L+TP ++ G E SN +++ F + + F+R+T +E+ KL ++ ++ ++
Sbjct: 451 RLLLTPTRLVVTGFHFEISNRMIRKFIQDHNFMSESFVRLTLGDENSDKLYSDDITVQVE 510
Query: 447 RGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDV 506
RI + GI I KHY+FLA+S+SQL+ S+W+ + + + +
Sbjct: 511 E-------------RIKEFVLGGIDIVGKHYKFLAYSSSQLKEQSLWLVSPERGWTVDGM 557
Query: 507 RGWMGCFNKIRSVSKCAARMGQLFSSS-----------------KQTLVVPVQDVEMIPD 549
R MG F+ ++ SK AAR+GQ FS++ K T + V+D + D
Sbjct: 558 RESMGDFSMCKTPSKYAARIGQCFSTTVSVAEGSGSRNIFSAMDKTTDWLRVKDD--LED 615
Query: 550 VEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTP---------SAFQIRYGGYKGVI 600
+ +G SDG+G I R+ + + P SA QIR GG KGV+
Sbjct: 616 ITSRWNGLEMQHSDGVGLI-----RKEVLQNAIKQVPFGPRDKTHISAIQIRLGGAKGVL 670
Query: 601 ---AVD-----RNSFRK--LSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTL 650
+ D +N R + LR S +KF + L V + +P FLNR ++ L S L
Sbjct: 671 VGWSFDQLNHLKNEIRNFDICLRPSQVKFSAPYMSLEVVNLATRIPYFLNRNVVLLGSHL 730
Query: 651 GVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSK--NILVKMLLQGYEPNVEP 708
G++D +F +Q++ + L +L + + AL L L+G D + L+ MLL G +PN++P
Sbjct: 731 GIQDGIFLCLQKEMIQDLNLLLYDADHALRFLPSLSGPDCSLVSTLMSMLLAGMKPNIDP 790
Query: 709 YLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESK 768
+L L + + + L+ + RI+V G +L+GC DETG++ VF++V
Sbjct: 791 FLFSCLHTTRAHHMMTLRKKARIFVKDGAVLMGCLDETGLVPENSVFIQV--------KH 842
Query: 769 DQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGER 828
D F ++ GKV+VTK+P +HPGD+R+LEAV +L K+ D IIF + G R
Sbjct: 843 DNGSFKPIE-------GKVMVTKHPVMHPGDMRMLEAVNIPEL--KNMKDIIIFSRHGSR 893
Query: 829 PHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYT-----GRRSRIMDHDVTLEEIHKF 883
P ++ SG DLDGD+F ++WD L ++ PM+Y+ G+ + ++ L
Sbjct: 894 PEADKMSGSDLDGDLFAVTWDKRLFLRQSLDPMEYSPPPTLGQETPPINDSSLLAH---- 949
Query: 884 FVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALK 943
FV + ND LG IS L HA A +C+ LA L S+AVDF K+G A +P LK
Sbjct: 950 FVGHAKNDNLGRISMLWLDHA-VTKGGAGCHECVRLAKLASIAVDFPKSGISATLPDDLK 1008
Query: 944 PK---------------EFPDFMER------EDKPRYISFGVLGKLY------------- 969
K P F ++ E FG G+LY
Sbjct: 1009 IKSTVIQNITSLSICFERIPSFPQKTVEEALELGFATDVFGCDGELYDMVVSAMKDGTTF 1068
Query: 970 -------RATLDSIMQIRSNAIWSEKIA-EASYDHDLEVDGFEAFLGVAESHKEMY---- 1017
R D + +R+ A E Y+ + ++ F E ++EMY
Sbjct: 1069 DCVALAGRKRNDKGLILRTGKPRDLHTAKETVYECNPKLP-FHLGWKRNEDNQEMYDFML 1127
Query: 1018 ----------EEEMNALMNYYGASTEDEILTG--------NLRNR--------------- 1044
EE++ ALMN + TE EI+TG N R R
Sbjct: 1128 EFALAQRSAYEEQLGALMNKFKVHTEGEIVTGIILKHHKLNKRRRHDVSEEIRRLFRTLR 1187
Query: 1045 ------------------ASYLQRDNR--RYGDMKDRILLSAKNLQNEAKEWFGSSCKEN 1084
A Y + ++ R ++KD L + ++L + + +SCK
Sbjct: 1188 RTFRDEFFTAVHHIVHYGAEYFENNSNWDRQDELKDEELEAIEDLVTASSKGMATSCKVQ 1247
Query: 1085 EHPQ-LASAWYHVTYSPSYCKE--RMALLSFPWIVG 1117
+ LAS++Y VTYSP E ++A SFPW+V
Sbjct: 1248 CVARLLASSYYLVTYSPYIHNEDDKVAYFSFPWVVA 1283
>gi|46109400|ref|XP_381758.1| hypothetical protein FG01582.1 [Gibberella zeae PH-1]
Length = 1467
Score = 281 bits (718), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 210/685 (30%), Positives = 338/685 (49%), Gaps = 76/685 (11%)
Query: 385 NVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTS 444
N + ++ALVTP ++ GPE E+ N V++ +A Y F+RV F EE L
Sbjct: 436 NQIWVFKALVTPTRLLLDGPEAESKNRVLRKYADYNDYFLRVLFCEEGGQDL-------R 488
Query: 445 IQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWM---FASNDEV 501
+ ++P IYS+ ++ GI I + ++FL FS S LR++S W F D
Sbjct: 489 FHPKVDNEP----IYSQFRRMMDHGIQIAGRKFDFLGFSHSSLRSHSAWFSAPFIDKDRQ 544
Query: 502 --SAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDV--EVTSDGN 557
S E + +G F IR +KCAAR+GQ FS + VP+ + ++P +V S+
Sbjct: 545 LQSPEAILQALGDFRDIRVPAKCAARIGQAFSET--PYAVPIFENNIVPRYIPDVKSEDG 602
Query: 558 TYCFSDGIGKISLSFARQVAQKCGL-SHTPSAFQIRYGGYKGVIAVD-RNSFRKLSLRR- 614
+ FSDG+G IS + + S P+ QIR+GG KG++++D R + +R+
Sbjct: 603 SRVFSDGVGTISQEALEAIWPYLSMNSAAPTCLQIRWGGCKGMLSLDTRLEGKVFCIRQE 662
Query: 615 SMLKFESRN--RMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKML 672
SM+KF+S + + S+ + LNR++I +L +G +DE F +Q L +L
Sbjct: 663 SMMKFKSEDTGELGICDTASKPLRLVLNRQMIKILEDMGTRDEWFFELQNNALDIL---- 718
Query: 673 INREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHEN------------ 720
R D + ++ + I + M L P + L M + + +
Sbjct: 719 --RNVTADATNTSSFLEHQAIGINMGL----PRLVKQLEKMDIDYRRDKFLKAAVEHVVL 772
Query: 721 -QLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDK 779
+L LK + RI V G L G DETG L G+V+V T S+ K
Sbjct: 773 RELRLLKHKARIPVDNGVTLFGIMDETGFLKEGEVYVTYDKTYGRNNSRGI--------K 824
Query: 780 TSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEE-KDYVDCIIFPQKGERPHPNECSGGD 838
+++ G+++VT++P LHPGD+++++ V + + +CI+F QKG+R P+ SGGD
Sbjct: 825 STLTDGEIIVTRSPALHPGDIQLVKQVTPPQGHSLRSLQNCIVFSQKGKRDLPSMLSGGD 884
Query: 839 LDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAIST 898
LDGDI+ I WD + +P P DY + +D V ++I FF+++M D LG I+T
Sbjct: 885 LDGDIYNIIWDPEAMPSRVFRPADYPRVTPQPLDRQVEPKDIADFFINFMRTDILGVIAT 944
Query: 899 AHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEM-PLALKPKEFPDFMEREDKP 957
H++ AD + + C+ LA LHS AVDF+KTG P + L P+ PDF+
Sbjct: 945 RHVILADYNDLGSIDRDCIALAELHSTAVDFSKTGIPVNVKALPRAPRFRPDFLATAPPL 1004
Query: 958 RYISFGVLGKL----YRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESH 1013
+ G L + D + + ++N SEKI Y + VD
Sbjct: 1005 KLYDKGQLAHIGEDDEMDDADDMARTKTNYYQSEKILGQLYRN---VD-----------E 1050
Query: 1014 KEMYEEEMNALMNYYGASTEDEILT 1038
K++++E+++ +N G S D++LT
Sbjct: 1051 KKIWDEDIHRRINTAGPSVWDQLLT 1075
>gi|380095764|emb|CCC05810.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1230
Score = 280 bits (716), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 226/741 (30%), Positives = 357/741 (48%), Gaps = 106/741 (14%)
Query: 382 IDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANA- 440
I + YRALVTP +I GPELE N +++ F ++ F+RV F EED L N+
Sbjct: 407 IPSGLTKIYRALVTPTRIELHGPELEAMNRILRKFPEHQDHFLRVQFGEEDGQDLFFNST 466
Query: 441 LSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWM---FAS 497
+S + IY R +L GI +G + Y FL FS S LR +S+W+ F
Sbjct: 467 VSMDV------------IYQRFKDVLTKGISVGGRVYRFLGFSHSSLRAHSLWLSAPFIH 514
Query: 498 NDEVS-AEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDG 556
N + +E++ +G F IRS ++ AAR+GQ FS + ++ + + +I +V
Sbjct: 515 NGVLRISENIIEGLGDFRNIRSPARRAARIGQAFSETPYSVSLHDHGIAVIRQNDVKR-- 572
Query: 557 NTYCFSDGIGKISLSFARQVAQKCGLSHT-PSAFQIRYGGYKGVIAVD-RNSFRKLSLRR 614
FSDG+GKIS + ++ S P+ Q+R+ G KG++A+D R R++ +R
Sbjct: 573 GKRVFSDGVGKISQGALEVIHREIPASKGYPNCLQVRWAGAKGMLALDARLPGRQICIRD 632
Query: 615 SMLKFESRNR-MLNVTKW-SESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKML 672
SM KF S + L + S+ +P LNR++I +L +G + F +Q+++L L + +
Sbjct: 633 SMEKFRSHDEEHLEICDMASKPIPLMLNRQMIKILEDMGAPAKWFVRLQEKELQRL-RAI 691
Query: 673 INREAALDVLQKLNGVDSKNILVKMLLQGYEPNVE----PYLSMMLLSHHENQLSDLKSR 728
N + KL V L + L ++ N++ +L ++ S +L LK +
Sbjct: 692 TNSVHNVAAFLKLQCVGDSVHLGQFLKDVHKMNIDYRKDQFLRGIVESVVLRELRLLKHK 751
Query: 729 CRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVL 788
RI VP+G L G DETG+L G+V+V E+ D F K G V+
Sbjct: 752 ARIPVPRGITLFGVMDETGLLREGEVYV-------TYETVDDRF------KDPPTSGSVV 798
Query: 789 VTKNPCLHPGDVRVLEAVYEMKLEE-KDYVDCIIFPQKGERPHPNECSGGDLDGDIFFIS 847
VT++P LHPGD+++ + V ++ +CI+F Q GER P++ SGGDLDGD F +
Sbjct: 799 VTRSPALHPGDIQIAQNVIPPAGHPLRELKNCIVFSQNGERDLPSQLSGGDLDGDTFNVI 858
Query: 848 WDNDLIP-CETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADR 906
WD ++ ET DY R ++ ++ +++ FFV++M D LG I+ H++ AD
Sbjct: 859 WDQKIVSKLETFAAADYPRVTPRELNREIESKDMADFFVEFMKADHLGVIAVRHMILADV 918
Query: 907 DPDKARSSKCLHLATLHSMAVDFAKTGAPAEMP-LALKPKEFPDFM-ERED--------- 955
CL LA LHS AVDF+K+G ++ L P+ PDF+ R D
Sbjct: 919 RDQGTGDEDCLKLAELHSQAVDFSKSGIHVDITELPRPPRYRPDFLVNRPDVKIHDKSKI 978
Query: 956 ----------------KPRYISFG---VLGKLYRA-------TLDSIMQIRSN--AIWSE 987
PRY + +LGKLYRA T D +++ S+ + W E
Sbjct: 979 DLEEQYLKPDNDDDDDTPRYKYYASKKLLGKLYRAVDETKIWTRDIKLEVLSDGPSFWDE 1038
Query: 988 ----------KIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEM-NALMNYYGAST---- 1032
I E + H L+ A +E YE+ + +A++ + + T
Sbjct: 1039 LERSLLKRIGTIGEVRWKHRLD---------EARRIRESYEDAIRDAMVEFADSPTRPLK 1089
Query: 1033 EDEILTGNLRNRASYLQRDNR 1053
E E++ G + N+ R R
Sbjct: 1090 ELEVVIGFILNKKGIQSRRQR 1110
>gi|327295881|ref|XP_003232635.1| hypothetical protein TERG_06627 [Trichophyton rubrum CBS 118892]
gi|326464946|gb|EGD90399.1| hypothetical protein TERG_06627 [Trichophyton rubrum CBS 118892]
Length = 1207
Score = 279 bits (714), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 255/915 (27%), Positives = 405/915 (44%), Gaps = 139/915 (15%)
Query: 300 LSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPV--- 356
+ V FQL LV N ++SL A L + +V Q L ++ P
Sbjct: 319 FDYRVKFQLLKLVWNGELSLDQASLLLPAVHRLHQQHPHDIVAQALMRIDGNSVYPSPGV 378
Query: 357 ----SFVKTQLHVLGRNCKSIPLSSHK---RLIDHNVMSCYRALVTPMKIYCLGPELETS 409
+ ++ L +N +I + + L+ + +RA VTP IY GP ET
Sbjct: 379 LASDAGIEALTETLEKNLDTILKARTEWDINLMHEKNVLVHRATVTPAGIYLSGPYAETK 438
Query: 410 NYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPY---RTKIYSRILTIL 466
N +++ + F+RV F++E +F P+ + R ++
Sbjct: 439 NRILRKYLDNIDYFIRVEFLDETGDP-------------VFFDPHANLEPIFHQRFAGVM 485
Query: 467 QDGIVIGDKHYEFLAFSASQLRNNSVWMFA-----SNDEVSAEDVRGWMGCFNKIRSVSK 521
+ GI I + +EFL FS S LR + W A D ++A + G +G F+ IRS SK
Sbjct: 486 KRGIEIAGRGFEFLGFSHSSLRAQTCWFAAPFTTADGDYLNARTIIGNIGYFDHIRSPSK 545
Query: 522 CAARMGQLFSSSKQTLVVPVQDVEM-IPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKC 580
AAR+GQ FS + ++ V + V M PDV+ N FSDG+G +S ++ +
Sbjct: 546 QAARIGQAFSDTLTSISVSKEVVWMRAPDVK----RNDRIFSDGVGVMSRDLMYRIWNEY 601
Query: 581 GLSHT--PSAFQIRYGGYKGVIAVD-RNSFRKLSLRRSMLKFESRNRMLNVT---KWSES 634
L P+ FQIR G KG++++D R L LR SM+KF + + + N+ +
Sbjct: 602 ALREKVKPTVFQIRIAGAKGMVSLDTRRKGEFLMLRESMVKFPTDD-LYNIEICGAGIRA 660
Query: 635 MPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNIL 694
+P +LN +II +L LGV E F +QQ ++ L + E A L+ S +
Sbjct: 661 LPFYLNNQIIKILEDLGVPFEAFHQLQQDEINFLYSTFNSTERAAKFLEDSPVPRSLRLP 720
Query: 695 VKMLLQ---GYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNY 751
L+ G +P+L ++ +L DLK R RI VP L G DETG L
Sbjct: 721 WLFLVLKGLGIRYTRDPFLKRVMELTTLLRLRDLKYRARIRVPNAVTLYGIMDETGYLKE 780
Query: 752 GQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAV-YEMK 810
+++ + + +V+ V++T++P LHPGD++V+ AV
Sbjct: 781 NEIYC--------------VYLGENGRREILVRDNVVITRSPALHPGDIQVVNAVDVPAN 826
Query: 811 LEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRI 870
+ +C+ F Q G+R P+ SGGDLDGD++ I +D LIP +T PP +Y ++
Sbjct: 827 SPLRKLHNCVAFSQHGDRDLPSMLSGGDLDGDLYNIIYDTRLIPRKTIPPANYPRVEAKE 886
Query: 871 MDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFA 930
+D V E+I FFV +M D LG I+T H AD+ CL LA LHS+AVD++
Sbjct: 887 LDRKVETEDIIDFFVTFMQQDQLGRIATTHQTIADQSEFGTLDQACLKLAHLHSVAVDYS 946
Query: 931 KTGAPAE-MPLALKPKEFPDFMEREDKPR------------------------------- 958
K+G + + + P+ PDFM + + R
Sbjct: 947 KSGIAVDVLSIPRAPRVRPDFMAQSPRFRVADSIESIIGEKKSTMQEDDDEDEDDSDRRR 1006
Query: 959 ---YISFGVLGKLYRATLDS--IMQIRSNAI----WSEKIAEASYDHDL-EVDGF--EAF 1006
Y S +LG+LYR+ + + Q+R + + + +++ L EVDGF
Sbjct: 1007 IRYYKSNNILGRLYRSIDERSFLCQLRDAGAVDTNTNTNVLRSIWNYVLSEVDGFLWTHL 1066
Query: 1007 LGVAESHKEMYEEEMNALMNYYGAS------TEDEILTGNLRNRA-SYLQRDNRRYGDMK 1059
G+ +++YE+E+ LM Y A+ +E E+ G + +RD +M+
Sbjct: 1067 TGIFHDTRDIYEDELRELMRKYSATPLKSSISEYELFVGTILGHGHKQRRRDKDNAKEMR 1126
Query: 1060 DR----------ILLSAKNLQNEAKE------WFGSSCKEN-EHPQLASAWYHVTYSPSY 1102
D ++ ++ EA E W + K + + P L SA H
Sbjct: 1127 DEYNRLVEFTISMIRDTESGGTEALERSIACFWVAINGKSSGQKPGLRSAHAH------- 1179
Query: 1103 CKERMALLSFPWIVG 1117
+ LLSFPWI
Sbjct: 1180 ---QEKLLSFPWIAA 1191
>gi|341891711|gb|EGT47646.1| CBN-EGO-1 protein [Caenorhabditis brenneri]
Length = 1632
Score = 279 bits (713), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 223/850 (26%), Positives = 388/850 (45%), Gaps = 147/850 (17%)
Query: 391 RALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIF 450
+ + TP ++ + PE N V++ + + +R+TF ++D K+ N ST +++ +
Sbjct: 493 KIIFTPTRVIYVAPETLMGNRVLRRYDHDGTRVLRITFRDDDNQKMRTNKTSTLLEKTVN 552
Query: 451 SKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFAS------------- 497
+ L GI + +++ +L S SQ+R+N +
Sbjct: 553 N-------------YLHSGITVAGRNFGYLGSSNSQMRDNGAYFMEKYSSSQCREYEAIH 599
Query: 498 --------NDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPD 549
N ++ A R +G F I ++ K AR+GQ F+ S+ + V + +
Sbjct: 600 HVKPPITYNPKIQA--ARKNLGRFETIDNIPKMMARLGQCFTQSRLS-GVNLDRCTYMTM 656
Query: 550 VEVTSDGNT----YCFSDGIGKISLSFARQVAQKCGLSH-TPSAFQIRYGGYKGVIAVDR 604
++T N Y FSDG+G +SL FA+ V+Q PS FQ R+ G KGVIAV+
Sbjct: 657 YDLTGGKNIKRDEYTFSDGVGMMSLRFAQMVSQVMDFGKGVPSCFQFRFRGMKGVIAVEP 716
Query: 605 --NSFRKLSL-------------------RRSMLKFESRNR---MLNVTKWSESMPCFLN 640
+ RK SL R S +KF S+ + + K+S +P LN
Sbjct: 717 LLDMIRKWSLEFALEKPSDDVAWGLNCVFRPSQIKFISKRHPRDQVEIVKYSSPVPVSLN 776
Query: 641 REIISLLSTLGVKDEV---------FEAMQQQQLILLGKMLINREAALDVLQKLNGVDSK 691
+ I++L + + E + +Q++L + +++ + L++L +
Sbjct: 777 KPFINILDQVSEMQSLECHRRVTNRIEELLDRQMLLFAQQMVDETFCRNRLKEL----PR 832
Query: 692 NILVKMLLQ--GYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPK--GRLLIGCFDETG 747
+ + L G+ + EP+ ++ + + ++ + +I +P+ GR ++G DETG
Sbjct: 833 RVDIDYLRTTWGFTLSSEPFFRSLIKASIKFSITKQLRKEQIPIPQDLGRSMLGVVDETG 892
Query: 748 ILNYGQVFVRVTMTRE-ELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAV 806
L YGQ+FV+ T +L K+ + ++ G VL+TKNPC+ GDVR+ EAV
Sbjct: 893 RLQYGQIFVQYTKNLALKLPPKNAA--------RQVLTGTVLLTKNPCIVAGDVRIFEAV 944
Query: 807 YEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGR 866
+L D ++FPQ G RPHP+E +G DLDGD + I WD L+ + E P D+T
Sbjct: 945 DIPELHH--MCDVVVFPQHGPRPHPDEMAGSDLDGDEYSIIWDQQLLLDKNEDPFDFTSE 1002
Query: 867 RSRIMDHDVTLEEIHK-FFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSM 925
+ + + ++++ + F+V Y+ D++G IS +HL ++D+ AR C+ LA +
Sbjct: 1003 KQKSSFKEEEIDDLMREFYVKYLKLDSVGTISNSHLHNSDQYGLNARV--CMDLAKKNCQ 1060
Query: 926 AVDFAKTGAP--------------AEMPLALKPKEFPDF-MEREDKPRYISFGVLGKLYR 970
AVDF K+G P EM + + PD+ M + P Y+S + GKL+R
Sbjct: 1061 AVDFTKSGQPPDELERKWRKDEETGEMIPPERCERVPDYHMGNDHTPMYVSPRLCGKLFR 1120
Query: 971 --ATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYY 1028
+D +++I ++ E S D ++ +DG+E+++ A Y ++ ++M Y
Sbjct: 1121 EFKAIDDVLKISEE---RDEQVEISIDENIMMDGYESYMHSARDELSRYNAQLRSMMENY 1177
Query: 1029 GASTEDEILTG---NLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWF-------- 1077
G TE E+ +G ++RNR S +D+ + + I NL + +E F
Sbjct: 1178 GIKTEGEVFSGCIVDMRNRISDKDQDDMSFYNTNQMIETKVTNLFKKYREHFFEEFEGGW 1237
Query: 1078 ----------GS-------SCKENEHPQL--ASAWYHVTYSPSYCKERMALLSFPWIVGD 1118
GS C+ + A AWY Y + LSF WI D
Sbjct: 1238 EANTESSSRIGSDANILQRQCRAPTQKMMRKAVAWYRACYEEARITRENKKLSFAWIAFD 1297
Query: 1119 ILLNIKSVNS 1128
++ +K S
Sbjct: 1298 VIAMVKQTRS 1307
>gi|341885452|gb|EGT41387.1| hypothetical protein CAEBREN_32717 [Caenorhabditis brenneri]
Length = 1562
Score = 279 bits (713), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 233/826 (28%), Positives = 383/826 (46%), Gaps = 133/826 (16%)
Query: 360 KTQLHVL--GRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFA 417
KTQ L G + + + L+ + + N + + +VTP +I + PE+ N +V+ F
Sbjct: 651 KTQYERLLSGESLQDVGLA---KPLPKNCVQVAKVIVTPSRILLMAPEVMMVNRIVRRFG 707
Query: 418 K-YASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKH 476
YA +R F +++ +
Sbjct: 708 PDYA---LRCVFRDDNLGR----------------------------------------- 723
Query: 477 YEFLAFSASQLRNNSVWMFA-----SNDEVSA--EDVRGWMGCFNKIRSVSKCAARMGQL 529
+S SQ+R+ +++A VS E++R WMG F + SV K +RMGQ
Sbjct: 724 -----WSNSQMRDQGCYLYAPRVDPGTGRVSGTVEEIRKWMGDFREAVSVPKMMSRMGQC 778
Query: 530 FSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAF 589
F+ ++ T+ + + + PDVE G YCFSDG G+IS+ A + + L TP+ F
Sbjct: 779 FTQAQPTVRLERRHWIVEPDVEGGLSGK-YCFSDGCGRISVKLANHITKILELKETPACF 837
Query: 590 QIRYGGYKGVIAVDRN-----SFRKLSLRRSMLKF-----ESRNRMLNVTKWSESMPCFL 639
Q+R+ G+KG++ +D K+ R+S KF + ++ L V K++ P L
Sbjct: 838 QVRFKGFKGILVIDPTIDDIIGMPKVVFRKSQQKFGEGGGDQQDEYLEVVKYAMPSPVCL 897
Query: 640 NREIISLLSTLGVKDEVFEAMQ---------QQQLILLGKMLINR-EAALDVLQKLNGVD 689
NR I++L + K + +++L L ML+N +AA +++ + N
Sbjct: 898 NRPFITILDQVSAKQSASSHRRITNRIHYYLERELCSLSNMLLNENQAAEELVNRTNLPI 957
Query: 690 SKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPK--GRLLIGCFDETG 747
N K G+ + +P + ML S + + S+ +I++P GR + G DETG
Sbjct: 958 DWNKASKH--AGFRLSKDPLIRSMLFSIYRYNIIHHISKAKIFLPPDLGRSMYGVVDETG 1015
Query: 748 ILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVK-GKVLVTKNPCLHPGDVRVLEAV 806
+L YGQVF++ + QS R T I+K GKVL+TKNPC PGDVRV EAV
Sbjct: 1016 LLQYGQVFIQYS----------QSI--RQTSATPILKTGKVLITKNPCHVPGDVRVFEAV 1063
Query: 807 YEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGR 866
++ L VD ++FP+ G RPHP+E +G DLDGD + I WD +++ E M Y
Sbjct: 1064 WQPALAH--LVDVVVFPRHGPRPHPDEMAGSDLDGDEYSIIWDQEMLLDYNEEAMIYPSS 1121
Query: 867 RSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMA 926
+ D + T +++ +FF+ Y+ D++G +S AHL +AD C ++A ++A
Sbjct: 1122 TAPEEDKEPTTDDMVEFFLRYLQQDSIGRMSNAHLTYADL--HGLFHENCRNIALKCAVA 1179
Query: 927 VDFAKTGAPAEMPLALKPKEF-PDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIW 985
VDF K+G PAE + + E PD+M KP Y S + G+L+R + ++
Sbjct: 1180 VDFPKSGVPAEPLASFEQCEMTPDYMATGGKPMYYSPRLNGQLHRKA-RKVEEVLEEYET 1238
Query: 986 SEKIAEASYDHDLEVDGFEAFLGV------AESHKEMYEEEMNALMNYYGASTEDEILTG 1039
I E YD + D + F G A ++ Y + M L++ YG E +++G
Sbjct: 1239 RGSIFEGEYDKIICPDDADVFFGSEAKLVQAMMIRDEYIDRMQQLLDEYGIEDEASVVSG 1298
Query: 1040 NLRN--RASYLQRDNRRYGDMKDRILLSAKNLQN--EAK--EWFGSSCKE--NEHPQL-- 1089
+ + R + ++RD+ + + L + L + AK E FG N+ ++
Sbjct: 1299 HAASIKRLAGMERDDYSFYHTDKIVELRYEKLYHVFRAKFFEEFGGEAAHLVNDGSKMRL 1358
Query: 1090 ---------ASAWYHVTY-SPSYCKE-RMALLSFPWIVGDILLNIK 1124
WY V+Y P K + S PW+V D L +++
Sbjct: 1359 NCTKAMREKVRQWYFVSYVQPKRNKTGKFIGQSLPWVVWDALCDLR 1404
>gi|347830482|emb|CCD46179.1| similar to rna-dependent rna polymerase [Botryotinia fuckeliana]
Length = 1203
Score = 278 bits (712), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 200/597 (33%), Positives = 299/597 (50%), Gaps = 70/597 (11%)
Query: 384 HNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKL--PANAL 441
N +R +TP Y GPE E++N +++ +A S+F+RVTF +ED +L +NA
Sbjct: 416 QNTALIHRVTITPAGFYLDGPEPESNNRILRKYAGNHSNFVRVTFCDEDGDRLQYASNAS 475
Query: 442 STSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWM---FASN 498
+ I G+F K +LQDG IG + YE+L S S LR S W F N
Sbjct: 476 NDEIYDGVFRK------------VLQDGFSIGKQKYEYLGSSHSSLRTQSCWFVAPFTQN 523
Query: 499 D-EVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVV-PVQDVEMIPDVEVTSDG 556
D A + +G F IRS +KCAAR+GQ FS + TL + VE + D+E
Sbjct: 524 DIYYDALHITQDLGRFGDIRSPAKCAARIGQAFSDTPNTLTLDETVTVETVADIE----R 579
Query: 557 NTYCFSDGIGKISLSFARQVAQKCGLSH--TPSAFQIRYGGYKGVIAVD-RNSFRKLSLR 613
N FSDG+G +S ++ + + P+ FQIRY G KG+I++D R KL LR
Sbjct: 580 NGRVFSDGVGTMSEKLMEKIWDRLPDKYLVKPTCFQIRYRGAKGMISLDSRLPGVKLRLR 639
Query: 614 RSMLKFE--SRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKM 671
SM+KFE + N + + +P +LNR+ I +L LGV+ E F +Q +++ L ++
Sbjct: 640 ESMIKFEGSTSNDLEICGGAYKPLPMYLNRQFIKILEDLGVEPEYFMRLQAKEVSRLREI 699
Query: 672 LINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHEN----------- 720
+ A LQ SK + +LL P + + S + L +
Sbjct: 700 TASAYNASTFLQ------SKRVGDVVLL----PQLIEHCSALDLDFRNDLFLRDILEMTV 749
Query: 721 --QLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDD 778
+L LK + RI V +G L G DETGIL G+++ +
Sbjct: 750 LIELRTLKHKARIPVERGYHLHGIMDETGILEEGEIYC---------------CWIEDGK 794
Query: 779 KTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYV-DCIIFPQKGERPHPNECSGG 837
+T++V V++T+ P LHPGD+++ AV + + +C+ F QKG R P++ SGG
Sbjct: 795 RTTLVGSNVVITRAPALHPGDIQLANAVNVPSDSPLNRLYNCVCFSQKGARDLPSQLSGG 854
Query: 838 DLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAIS 897
DLDGD++++ +D D+ T P DY+ + V E++ FF+ +M D LG IS
Sbjct: 855 DLDGDLYYVIFDEDMKLKRTVKPADYSRSLPLDIGRPVKQEDMADFFLTFMKTDQLGVIS 914
Query: 898 TAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEF---PDFM 951
H V+AD+D S CL LA L S AVD++KTG P ++ P+ PDFM
Sbjct: 915 NRHQVYADQDVMGTECSDCLKLAELCSTAVDYSKTGIPPKLNDPSVPRHSLWRPDFM 971
>gi|346973013|gb|EGY16465.1| RNA-dependent RNA polymerase [Verticillium dahliae VdLs.17]
Length = 1310
Score = 278 bits (712), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 196/602 (32%), Positives = 308/602 (51%), Gaps = 43/602 (7%)
Query: 354 DPVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVV 413
DPV+ + L R K +++ K + N ++A VTP +I GP E N ++
Sbjct: 397 DPVALMAHLLKKEARTRKEAAMTAFKHTSNKNYAWVFKANVTPTRITLHGPAYEPMNRIL 456
Query: 414 KNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIG 473
+ F +A FMRV F +E+ + +A K IY+R +LQ GI I
Sbjct: 457 RKFPDHAEYFMRVQFCDENGDDIFLSA-----------KVSNDHIYNRFRRVLQSGIQIA 505
Query: 474 DKHYEFLAFSASQLRNNSVWMFASNDEVSAE-----DVRGWMGCFNKIRSVSKCAARMGQ 528
+ Y FL FS S LR++S W A + + + ++ +G F IR +KCAAR+GQ
Sbjct: 506 GRVYSFLGFSHSSLRSHSAWFSAPFVDKTGQLQSYVNIIKSLGDFEHIRIPAKCAARIGQ 565
Query: 529 LFSSSKQTLVVPVQDV--EMIPDVEVTSDGNTYCFSDGIGKISLSFARQV-AQKCGLSHT 585
FS + ++ + + + IPDV+ GN FSDG+G IS + +
Sbjct: 566 AFSETTSSVSLVDHGIVCQFIPDVKY---GNR-VFSDGVGTISRDALETIWPHLPRMESL 621
Query: 586 PSAFQIRYGGYKGVIAVD-RNSFRKLSLRR-SMLKFESRN--RMLNVTKWSESMPCFLNR 641
P+ QIR+GG KG++++D R R +++R+ SMLKF S + + S + LNR
Sbjct: 622 PTCLQIRWGGVKGMLSLDSRLPGRVMNIRQESMLKFPSTDLDNLGICGAASRPLRMVLNR 681
Query: 642 EIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKML--L 699
++I +L +GV+DE F ++Q+++L L + + LQ L G+ S L + L
Sbjct: 682 QMIKILEDMGVRDEWFFSLQKRELERLRAVTADAWNTGAFLQ-LQGIGSAFYLSTFIKTL 740
Query: 700 QGYEPNV--EPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVR 757
Y N + +L + + +L LK + RI VP+G L G DETG L+ G+V+V
Sbjct: 741 DKYGINYRRDDFLRCTVEAVVLRELRLLKHKARIPVPQGVTLFGIMDETGFLSEGEVYV- 799
Query: 758 VTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVR-VLEAVYEMKLEEKDY 816
D + + +++ G +LVT++P LHPGD++ V + +D
Sbjct: 800 ---------CYDSRYNGSLPIDSTLSDGNILVTRSPALHPGDIQWVRMRTPPVGHPLRDL 850
Query: 817 VDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVT 876
+CI+F Q GER P++ SGGDLDGD++ I WD P P DY ++ VT
Sbjct: 851 RNCIVFSQHGERDLPSQLSGGDLDGDLYNIIWDRQARPKRFFAPADYPRITPTELNRQVT 910
Query: 877 LEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPA 936
+++ FFV++M +D LG I+T HL+ AD+ + + C+ A +HS AVDF+KTG P
Sbjct: 911 RDDMAGFFVNFMKSDVLGMIATKHLILADQKEEGTLDADCIIFAEMHSTAVDFSKTGIPV 970
Query: 937 EM 938
+M
Sbjct: 971 DM 972
>gi|336273462|ref|XP_003351485.1| hypothetical protein SMAC_00026 [Sordaria macrospora k-hell]
Length = 1226
Score = 278 bits (711), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 225/737 (30%), Positives = 357/737 (48%), Gaps = 102/737 (13%)
Query: 382 IDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANA- 440
I + YRALVTP +I GPELE N +++ F ++ F+RV F EED L N+
Sbjct: 407 IPSGLTKIYRALVTPTRIELHGPELEAMNRILRKFPEHQDHFLRVQFGEEDGQDLFFNST 466
Query: 441 LSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWM---FAS 497
+S + IY R +L GI +G + Y FL FS S LR +S+W+ F
Sbjct: 467 VSMDV------------IYQRFKDVLTKGISVGGRVYRFLGFSHSSLRAHSLWLSAPFIH 514
Query: 498 NDEVS-AEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDG 556
N + +E++ +G F IRS ++ AAR+GQ FS + ++ + + +I +V
Sbjct: 515 NGVLRISENIIEGLGDFRNIRSPARRAARIGQAFSETPYSVSLHDHGIAVIRQNDVKR-- 572
Query: 557 NTYCFSDGIGKISLSFARQVAQKCGLSHT-PSAFQIRYGGYKGVIAVD-RNSFRKLSLRR 614
FSDG+GKIS + ++ S P+ Q+R+ G KG++A+D R R++ +R
Sbjct: 573 GKRVFSDGVGKISQGALEVIHREIPASKGYPNCLQVRWAGAKGMLALDARLPGRQICIRD 632
Query: 615 SMLKFESRNR-MLNVTKW-SESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKML 672
SM KF S + L + S+ +P LNR++I +L +G + F +Q+++L L + +
Sbjct: 633 SMEKFRSHDEEHLEICDMASKPIPLMLNRQMIKILEDMGAPAKWFVRLQEKELQRL-RAI 691
Query: 673 INREAALDVLQKLNGVDSKNILVKMLLQGYEPNVE----PYLSMMLLSHHENQLSDLKSR 728
N + KL V L + L ++ N++ +L ++ S +L LK +
Sbjct: 692 TNSVHNVAAFLKLQCVGDSVHLGQFLKDVHKMNIDYRKDQFLRGIVESVVLRELRLLKHK 751
Query: 729 CRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVL 788
RI VP+G L G DETG+L G+V+V E+ D F K G V+
Sbjct: 752 ARIPVPRGITLFGVMDETGLLREGEVYV-------TYETVDDRF------KDPPTSGSVV 798
Query: 789 VTKNPCLHPGDVRVLEAVYEMKLEE-KDYVDCIIFPQKGERPHPNECSGGDLDGDIFFIS 847
VT++P LHPGD+++ + V ++ +CI+F Q GER P++ SGGDLDGD F +
Sbjct: 799 VTRSPALHPGDIQIAQNVIPPAGHPLRELKNCIVFSQNGERDLPSQLSGGDLDGDTFNVI 858
Query: 848 WDNDLIP-CETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADR 906
WD ++ ET DY R ++ ++ +++ FFV++M D LG I+ H++ AD
Sbjct: 859 WDQKIVSKLETFAAADYPRVTPRELNREIESKDMADFFVEFMKADHLGVIAVRHMILADV 918
Query: 907 DPDKARSSKCLHLATLHSMAVDFAKTGAPAEMP-LALKPKEFPDF--MEREDK------- 956
CL LA LHS AVDF+K+G ++ L P+ PD ++ DK
Sbjct: 919 RDQGTGDEDCLKLAELHSQAVDFSKSGIHVDITELPRPPRYRPDLPDVKIHDKSKIDLEE 978
Query: 957 -------------PRYISFG---VLGKLYRA-------TLDSIMQIRSN--AIWSE---- 987
PRY + +LGKLYRA T D +++ S+ + W E
Sbjct: 979 QYLKPDNDDDDDTPRYKYYASKKLLGKLYRAVDETKIWTRDIKLEVLSDGPSFWDELERS 1038
Query: 988 ------KIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEM-NALMNYYGAST----EDEI 1036
I E + H L+ A +E YE+ + +A++ + + T E E+
Sbjct: 1039 LLKRIGTIGEVRWKHRLD---------EARRIRESYEDAIRDAMVEFADSPTRPLKELEV 1089
Query: 1037 LTGNLRNRASYLQRDNR 1053
+ G + N+ R R
Sbjct: 1090 VIGFILNKKGIQSRRQR 1106
>gi|154290300|ref|XP_001545747.1| hypothetical protein BC1G_15659 [Botryotinia fuckeliana B05.10]
Length = 1080
Score = 278 bits (710), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 199/597 (33%), Positives = 299/597 (50%), Gaps = 70/597 (11%)
Query: 384 HNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKL--PANAL 441
N +R +TP Y GPE E++N +++ +A S+F+RVTF +ED +L +NA
Sbjct: 283 QNTALIHRVTITPAGFYLDGPEPESNNRILRKYAGNHSNFVRVTFCDEDGDRLQYASNAS 342
Query: 442 STSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWM---FASN 498
+ I G+F K +LQDG IG + YE+L S S LR S W F N
Sbjct: 343 NDEIYDGVFRK------------VLQDGFSIGKQKYEYLGSSHSSLRTQSCWFVAPFTQN 390
Query: 499 D-EVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVV-PVQDVEMIPDVEVTSDG 556
D A + +G F IRS +KCAAR+GQ FS + TL + VE + D+E
Sbjct: 391 DIYYDALHITQDLGRFGDIRSPAKCAARIGQAFSDTPNTLTLDETVTVETVADIE----R 446
Query: 557 NTYCFSDGIGKISLSFARQVAQKCGLSH--TPSAFQIRYGGYKGVIAVD-RNSFRKLSLR 613
N FSDG+G +S ++ + + P+ FQIRY G KG+I++D R +L LR
Sbjct: 447 NGRVFSDGVGTMSEKLMEKIWDRLPDKYLVKPTCFQIRYRGAKGMISLDSRLPGVQLRLR 506
Query: 614 RSMLKFE--SRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKM 671
SM+KFE + N + + +P +LNR+ I +L LGV+ E F +Q +++ L ++
Sbjct: 507 ESMIKFEGSTSNDLEICGGAYKPLPMYLNRQFIKILEDLGVEPEYFMRLQAKEVSRLREI 566
Query: 672 LINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHEN----------- 720
+ A LQ SK + +LL P + + S + L +
Sbjct: 567 TASAYNASTFLQ------SKRVGDVVLL----PQLIEHCSALDLDFRNDLFLRDILEMTV 616
Query: 721 --QLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDD 778
+L LK + RI V +G L G DETGIL G+++ +
Sbjct: 617 LIELRTLKHKARIPVERGYHLHGIMDETGILEEGEIYC---------------CWIEDGK 661
Query: 779 KTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYV-DCIIFPQKGERPHPNECSGG 837
+T++V V++T+ P LHPGD+++ AV + + +C+ F QKG R P++ SGG
Sbjct: 662 RTTLVGSNVVITRAPALHPGDIQLANAVNVPSDSPLNRLYNCVCFSQKGARDLPSQLSGG 721
Query: 838 DLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAIS 897
DLDGD++++ +D D+ T P DY+ + V E++ FF+ +M D LG IS
Sbjct: 722 DLDGDLYYVIFDEDMKLKRTVKPADYSRSLPLDIGRPVKQEDMADFFLTFMKTDQLGVIS 781
Query: 898 TAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEF---PDFM 951
H V+AD+D S CL LA L S AVD++KTG P ++ P+ PDFM
Sbjct: 782 NRHQVYADQDVMGTECSDCLKLAELCSTAVDYSKTGIPPKLNDPSVPRHSLWRPDFM 838
>gi|17508365|ref|NP_493057.1| Protein RRF-2 [Caenorhabditis elegans]
gi|13655331|emb|CAC35914.1| Protein RRF-2 [Caenorhabditis elegans]
Length = 1579
Score = 277 bits (709), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 234/852 (27%), Positives = 394/852 (46%), Gaps = 147/852 (17%)
Query: 382 IDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANAL 441
I+ + + TP ++ PE+ N V++NF + + +RVTF +++ K+ ANA
Sbjct: 443 IEEGYQRVRKVIFTPTRVIYTPPEMIMGNRVLRNFDRDGTHVLRVTFRDDNNRKMRANAT 502
Query: 442 STSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDE- 500
+ I K Y L+ GIV+ ++ + FL S+SQ+R+N + N +
Sbjct: 503 GELLD--ICVKKY-----------LEHGIVVANRDFGFLGCSSSQMRDNGAYFMVKNTDN 549
Query: 501 -------------VSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMI 547
+ + VR +G F +I ++ K AR+GQ F+ S+ T V +
Sbjct: 550 RHKNACKMNSKFKPNIDSVRNQLGNFLQIENIPKLMARLGQCFTQSRLT------GVSLG 603
Query: 548 PDVEV---------TSDGNTYCFSDGIGKISLSFARQVAQKCGLSHT-PSAFQIRYGGYK 597
PD +S+G+ Y FSDG+G +S FA++V++ + PS FQ RY G K
Sbjct: 604 PDNYCLTHDLSGGRSSNGSEYTFSDGVGMMSYEFAQEVSRLMSFGRSVPSCFQFRYRGMK 663
Query: 598 GVIAVD------RNSFRKLSL----------RRSMLKFESRNRM---LNVTKWSESMPCF 638
GV+A+D RN K + R S +KFE + + + + K+S +
Sbjct: 664 GVLAIDPLLDKERNWQEKHGISLSKNIKCVFRPSQIKFEGKQILGDQVEMVKYSSPVLVA 723
Query: 639 LNREIISLLSTLGVKDEV---------FEAMQQQQLILLGKMLINREAALDVLQKLNGVD 689
LN+ +I++L + + E + Q + K + + + L++
Sbjct: 724 LNKPLINILDQVSEMQSLECHRRITSRIEELMDLQTLSFAKQMTDEACFRNKLKEF---- 779
Query: 690 SKNILVKML--LQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPK--GRLLIGCFDE 745
+ I + L + G+ + EP+ ++ + + ++ + +I +P GR ++G DE
Sbjct: 780 PRRIDIDYLRTIWGFTLSNEPFFRSLVKASIKFAITKQLFKEQIQIPSELGRSMLGVVDE 839
Query: 746 TGILNYGQVFVRVTMT-REELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLE 804
TGIL YGQVFV+ T R L +D +R + IV G VL+TKNP + PGDVR+ E
Sbjct: 840 TGILQYGQVFVQYTKNHRNILPPRDS---NRKVLGSEIVTGTVLLTKNPGIVPGDVRIFE 896
Query: 805 AVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYT 864
AV +L D ++FPQ G RPHP+E +G DLDGD + + WD L+ E D+
Sbjct: 897 AVDIPELHH--LCDVVVFPQHGPRPHPDEMAGSDLDGDEYSVIWDQKLLLERNEEAFDFA 954
Query: 865 GRRS-RIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLH 923
++ + + + + + +V+Y+ D +G I+ +HL ++D+ +R C++LA
Sbjct: 955 VEKNLQTYEWEDIDDLMRDVYVEYLKKDLVGLIANSHLHNSDQYGLTSRV--CMNLAKKS 1012
Query: 924 SMAVDFAKTGAP--------------AEMPLALKPKEFPDFMEREDK-PRYISFGVLGKL 968
AVDF+K+G P EM + + PD+ D P+Y+S + GKL
Sbjct: 1013 CQAVDFSKSGKPPDELQTTWKTDDATGEMIPPERAERVPDYHVGSDHMPKYVSPRLCGKL 1072
Query: 969 YR--ATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMN 1026
+R +D+ M+I KI D + VDGFE ++ A+ Y ++ + M+
Sbjct: 1073 FREFQGIDNAMKISEEKSEQYKI---EVDESIRVDGFEEYMEDAKKQLASYNGQLKSTMD 1129
Query: 1027 YYGASTEDEILTG---NLRNRASYLQRDN--------------------------RRYGD 1057
YG +E EI++G +RNR S +D+ +++G
Sbjct: 1130 TYGIQSEGEIMSGCIIEMRNRISDSDQDDMSFYNTNRMIETKMTALVSKFRTIFFQQFGG 1189
Query: 1058 MKD--RILLSAKNLQNEAKEWFGSSCKENEHPQL---ASAWYHVTYSPSYCKERMALLSF 1112
++ +L A N N +F C EN + ++ A AWY Y + LSF
Sbjct: 1190 FQEVCTLLPDAYNESN----FFNFRC-ENPNEEIRKKAVAWYRACYECAKSTREPRKLSF 1244
Query: 1113 PWIVGDILLNIK 1124
WI D++ IK
Sbjct: 1245 AWIAYDVIAKIK 1256
>gi|346325370|gb|EGX94967.1| rna-dependent rna polymerase [Cordyceps militaris CM01]
Length = 1252
Score = 277 bits (708), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 234/791 (29%), Positives = 366/791 (46%), Gaps = 121/791 (15%)
Query: 389 CYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRG 448
++A+V+P +I GP+ E+ N V++ F F+RV+F +ED +L N ++
Sbjct: 437 VFKAIVSPTRISLQGPDPESRNRVLRMFPDRGDQFLRVSFCDEDGQRLAFNPRVSN---- 492
Query: 449 IFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFAS-----NDEVSA 503
IY R +L GI I +H+ FL FS S LR++S W A +
Sbjct: 493 -------DPIYERFREVLTKGIRIAGRHFSFLGFSHSSLRSHSTWFLAPFIDADGQRQNR 545
Query: 504 EDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQT--LVVPVQDVEMIPDVEVTSDGNTYCF 561
+ + +G F+ I + +KCAAR+GQ FS + L V IPDV+ ++DGN F
Sbjct: 546 DTILAVLGNFSDILTPAKCAARIGQAFSETPYAVDLFETRIGVRWIPDVK-SADGNR-VF 603
Query: 562 SDGIGKISLS----FARQVAQKCGLSHTPSAFQIRYGGYKGVIAVD-RNSFRKLSLRR-S 615
SDG+G IS F + + ++ S + FQIR+ G KG++ +D R + + +R+ S
Sbjct: 604 SDGVGTISWGAVEDFWKALPKR---SAGVTCFQIRWAGVKGLLVLDPRLPGKVICVRKES 660
Query: 616 MLKFESRN-RMLNVTK-WSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLI 673
M+KF S++ + L + S + LNR++I +L +G F A+Q L L +
Sbjct: 661 MMKFPSQDLKELGICDVASRPLRLVLNRQVIKILEDMGTSASWFLALQNDALDFLRAVTA 720
Query: 674 NREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHEN----QLSDLKSRC 729
LQ + S L + Q + +++ L S E+ +L LK +
Sbjct: 721 TPLNTSTFLQ-YQDIGSAIGLPSFIKQLSKMDIDYRHDTFLKSVVEHVVLRELRLLKHKA 779
Query: 730 RIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLV 789
RI VPKG L G DETG L +V++ TR + R+D +++ G V+V
Sbjct: 780 RIPVPKGVTLFGVMDETGFLGENEVYITFDSTRGKSG-------ERMD--ATLIDGPVIV 830
Query: 790 TKNPCLHPGDVRVLEAVYEMKLEE-KDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISW 848
T++P LHPGD+++ + V K +CI F Q+G R P++ SGGDLDGD++ + W
Sbjct: 831 TRSPALHPGDIQIAKMVTPPDSHPLKSLRNCIAFSQRGSRDLPSQLSGGDLDGDLYNVIW 890
Query: 849 DNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDP 908
D P T P DYT +D VT +I FF+D+M +D LG I+T H + AD
Sbjct: 891 DPKAYPKHTFDPADYTRVVPPSLDRPVTRHDIANFFIDFMRSDILGLIATRHQILADVQE 950
Query: 909 DKARSSKCLHLATLHSMAVDFAKTGAPA---EMPLALKPKEFPDFME------------- 952
+ C+ LA +HS AVD++KTG +MP A P+ PDF+
Sbjct: 951 AGTSDASCIKLAEMHSTAVDYSKTGIAVNWRDMPRA--PRSRPDFLAPAPPVFLYDLGQI 1008
Query: 953 ---------------REDKPRY-ISFGVLGKLYRATLDSIMQIRSNAIWSE-------KI 989
KPRY S +LG LYR I N IWSE K+
Sbjct: 1009 SHIAEDDDDDDGNDMNSAKPRYHRSEKILGHLYRG-------IDENKIWSENIYRSIPKL 1061
Query: 990 AEASYDHDLEVDGFEAFLG----VAESHKE-------MYEEEMNALMNYYGAS-----TE 1033
+ + ++ LE E L ESH++ +YE+ ++ M ++ + TE
Sbjct: 1062 SSSVWEQLLERVQAELNLRRINMYYESHRQRAWKIRALYEDSISENMWHFSENSRSHITE 1121
Query: 1034 DEILTGNLRNRASYLQRDNR----RYGDMKDRILLSAKNLQNEAKE-------WFGSSCK 1082
E G++ N+ R R + D DR++ L + E ++
Sbjct: 1122 AEAFCGSILNKRGVQSRQQRETSIQLKDETDRVMTWITKLIRDGVERIDDEDVYYSDESD 1181
Query: 1083 ENEHPQLASAW 1093
E+++ L +W
Sbjct: 1182 EDDYSVLRLSW 1192
>gi|402078468|gb|EJT73733.1| RNA-dependent RNA polymerase [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 1287
Score = 276 bits (705), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 205/638 (32%), Positives = 315/638 (49%), Gaps = 79/638 (12%)
Query: 385 NVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTS 444
N+ + +RA+VTP +I GPE+ET N V++ + F+RV F +E L S
Sbjct: 439 NLTNIFRAVVTPTRITLHGPEVETKNRVLRKHPGHQDYFLRVQFCDEGSRDLRFET-GVS 497
Query: 445 IQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDE---- 500
++R +Y R +L GI + + Y FL FS S LR +SVW A+ +
Sbjct: 498 VER----------VYQRFKDVLLSGIRLPGRIYNFLGFSHSSLRTSSVWFCAAFRDKETG 547
Query: 501 --VSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQD-----VEMIPDVEVT 553
V+ + + +G F IR +K AAR+GQ FS + VVP+ ++ +PD+ +
Sbjct: 548 KLVNHKSIIEGLGEFGHIRCPAKLAARIGQAFSETPS--VVPLSGYSDILIKHVPDI-YS 604
Query: 554 SDGNTYCFSDGIGKISLSFARQVAQKCGLS-HTPSAFQIRYGGYKGVIAVDRN-SFRKLS 611
+DG CFSDG+G +S R + + + P+ FQIR+ G KG++A+D S + +
Sbjct: 605 ADGRR-CFSDGVGSVSEEMMRIIWAHVPMKKNAPTCFQIRHAGCKGMLALDTTLSGKIIY 663
Query: 612 LRRSMLKFESRNR--MLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLG 669
R SM KF+S ++ + S+++P LNR++I +L +G + F +Q +L L
Sbjct: 664 FRDSMKKFDSIDQEDLEICDTGSKAIPLVLNRQMIKILEDMGADHKWFLKLQSYRLKELQ 723
Query: 670 KMLINREAALDVLQKLNGVDSKNILVKML----LQGYEPNVEPYLSMMLLSHHENQLSDL 725
+ N L N V L K + L G + +P+L ++ + +L L
Sbjct: 724 AVTANAYNVQTFLHTAN-VGQPISLGKFIYWAHLNGMDYKKDPFLRGVVEALVLQELRLL 782
Query: 726 KSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKG 785
K + RI V KG+ L G DETG+L GQV+V T E++ + H
Sbjct: 783 KHKARIPVSKGKTLFGLIDETGLLREGQVYV--TFASEKIPGFQKPPRH---------SQ 831
Query: 786 KVLVTKNPCLHPGDVRVLEAVYEMKLEE-KDYVDCIIFPQKGERPHPNECSGGDLDGDIF 844
V+VT++P LHPGD++++ + + + I F + G R P+ SGGDLDGDI+
Sbjct: 832 SVIVTRSPALHPGDIQIVTNIIPPPDHPLAAHRNSIFFSRHGSRDLPSMLSGGDLDGDIY 891
Query: 845 FISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHA 904
I WD +++P + P DY+ + + V E+I + FVD+M ND LGAI+T H++ A
Sbjct: 892 NIIWDKEVLPKQRFHPADYSNAPPQDIGRPVEREDIVQHFVDFMKNDNLGAIATRHMILA 951
Query: 905 DRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEF-PDF------------- 950
D+ + C LA LHS AVDF+KTG P +M + F PDF
Sbjct: 952 DQMVEGTLHPDCQKLAELHSTAVDFSKTGIPVDMKELPRTNRFRPDFLSPGPIANLHDKD 1011
Query: 951 ---------------MEREDKPR---YISFGVLGKLYR 970
+E + PR Y S +LGKLYR
Sbjct: 1012 EILMEQYRAPDPEEELEHGEPPRFKYYKSGKILGKLYR 1049
>gi|429863873|gb|ELA38280.1| RNA-dependent RNA polymerase [Colletotrichum gloeosporioides Nara
gc5]
Length = 1308
Score = 275 bits (703), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 220/749 (29%), Positives = 351/749 (46%), Gaps = 120/749 (16%)
Query: 389 CYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRG 448
++A+VTP ++ GPE+E N +++ + FMRV F +ED + L N
Sbjct: 440 VFKAMVTPTRVTLHGPEMEPLNRILRKHRNHTDYFMRVQFCDEDGTDLWFNP-------- 491
Query: 449 IFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAE---- 504
+ ++ R +L GI + + Y+FL FS S LR+++ W A + S E
Sbjct: 492 ---RVNYEDVFERYKNVLNKGIQVAGRIYQFLGFSHSSLRSHAAWFMAPFVDDSGEMQLY 548
Query: 505 -DVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEM--IPDVEVTSDGNTYCF 561
+ +G F I+ +KCAAR+GQ FS + + + D+ IPD++ + G+ F
Sbjct: 549 RHIIKSLGDFEHIQIPAKCAARIGQTFSETPAFISLTDSDISAWNIPDIKSSIGGDDRVF 608
Query: 562 SDGIGKISLSFARQVAQKCGL-SHTPSAFQIRYGGYKGVIAVD-RNSFRKLSLRR-SMLK 618
SDG+G IS + + S P+ QIR+GG KG++++D R R + +RR SM K
Sbjct: 609 SDGVGTISREALELIWPRLPRGSLIPTCLQIRWGGVKGMLSLDTRLPGRVMCIRRESMEK 668
Query: 619 FESRN--RMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINRE 676
F S++ + S+ + LNR++I +L LGV+++ F +Q+ +L L R
Sbjct: 669 FPSQDTENLEICGGASKPLKLVLNRQMIKILEDLGVRNDFFLRLQKTELDRL------RA 722
Query: 677 AALDVLQKLNGVDSKNILVKMLLQGYEPNVEPY---------LSMMLLSHHENQLSDLKS 727
D + + I + L + +++ Y L ++ + +L LK
Sbjct: 723 VTADAYNTGTFLHMQGIGLNCFLPSFIKSLDKYGIDYRRDDFLRTVVQNVVLQELRLLKH 782
Query: 728 RCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKV 787
+ RI VPKG + G DETG L G+V++ R R S+ G V
Sbjct: 783 KARIPVPKGVTVFGVMDETGFLREGEVYIAYDTYRRP---------GRTSIDGSLRDGPV 833
Query: 788 LVTKNPCLHPGDVRVLEAVYEMKLEE-KDYVDCIIFPQKGERPHPNECSGGDLDGDIFFI 846
LVT++P LHPGD+++++ ++ +CI F Q G R P++ SGGDLDGD++ I
Sbjct: 834 LVTRSPALHPGDIQLVKMRTPPAGHPLRNLRNCIAFSQFGRRDLPSQLSGGDLDGDLYNI 893
Query: 847 SWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADR 906
WD D +P T DY + V E++ +FVD+M +D LG I+T HLV +D+
Sbjct: 894 IWDRDAMPKVTYKAADYPRVTPAALGRTVEREDMANWFVDFMQSDCLGLIATRHLVVSDQ 953
Query: 907 DPDKARSSKCLHLATLHSMAVDFAKTGAPA---EMPLALKPKEFPDF------------- 950
DP+ + CL LA LHS AVDF+KTG P E+P A P+ PDF
Sbjct: 954 DPNGTLGNDCLTLAGLHSTAVDFSKTGIPVDTKEIPKA--PRFRPDFLAPAPPAHIFDRN 1011
Query: 951 ----------MEREDK----PR--YISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASY 994
+E +D+ P Y S +LG LYR + IW+E I
Sbjct: 1012 EIEFIGKNETLEEDDEDMLPPHQYYKSEKILGILYR-------NVDEKHIWTEDIQRVVT 1064
Query: 995 DHDLEVDGFEAFLGVAESH---------------------KEMYEEEMNALMNYYGAS-- 1031
V ++ F+G+ E +++YE+ + M+ Y +
Sbjct: 1065 RAGPSV--WDQFIGLIERKIYGYTGGRVTWRTRQAEAKRLRDVYEDTVIQAMSTYSDNHV 1122
Query: 1032 ---TEDEILTGNLRNRA---SYLQRDNRR 1054
TE E+ G++ N+A + Q+DN +
Sbjct: 1123 KRMTEIEVFCGSIFNKAGAQTRRQKDNSK 1151
>gi|336467963|gb|EGO56126.1| hypothetical protein NEUTE1DRAFT_64449 [Neurospora tetrasperma FGSC
2508]
gi|350289794|gb|EGZ71019.1| RdRP-domain-containing protein [Neurospora tetrasperma FGSC 2509]
Length = 1350
Score = 274 bits (701), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 191/588 (32%), Positives = 302/588 (51%), Gaps = 48/588 (8%)
Query: 382 IDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANAL 441
I + YRALVTP +I GPELE N +++ F ++ F+RV F EED L N+
Sbjct: 405 IPPGLTKIYRALVTPTRIELHGPELEAKNRILRKFPEHQDHFLRVQFGEEDGQDLFFNSA 464
Query: 442 STSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWM---FASN 498
+ IY R +L +GI +G + Y FL FS S LR +S+W+ F N
Sbjct: 465 VSM-----------DAIYQRFKDVLTNGISVGGRVYRFLGFSHSSLRAHSLWLAAPFIYN 513
Query: 499 DEVS-AEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGN 557
+ A ++ +G F I+S ++ AAR+GQ FS + ++ + +++I ++ N
Sbjct: 514 GRLQLANNIIEGLGDFGNIKSPARRAARIGQAFSETPYSVSLDTHGIDVIRQRDIKR--N 571
Query: 558 TYCFSDGIGKISLS----FARQVAQKCGLSHTPSAFQIRYGGYKGVIAVD-RNSFRKLSL 612
FSDG+G IS R++ + G P+ Q+R+ G KG++A+D R R++ +
Sbjct: 572 ERVFSDGVGIISQGALEVIHREIPESKGY---PNCLQVRWAGAKGMLALDARLPGRQICI 628
Query: 613 RRSMLKFESRNR-MLNVTKW-SESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGK 670
R SM KF SR+ L + S+ +P LNR++I +L +G + F +Q+++L L
Sbjct: 629 RDSMEKFRSRDEEHLEICDMASKPIPLMLNRQMIKILEDMGAPAKWFMKLQEKELQRLRA 688
Query: 671 MLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVE----PYLSMMLLSHHENQLSDLK 726
+ N + L KL V L + L + N++ +L ++ + +L LK
Sbjct: 689 ITDNVQNVATFL-KLQCVGDSVHLSQFLKDLDKMNIDYRRDQFLRGIVEAVVLRELRLLK 747
Query: 727 SRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGK 786
+ RI VP G L G DETG+L G+V+V E+ D F K G
Sbjct: 748 HKARIPVPYGVTLFGVMDETGLLREGEVYV-------TFETVDGRF------KGPPTAGP 794
Query: 787 VLVTKNPCLHPGDVRVLEAVYEMKLEE-KDYVDCIIFPQKGERPHPNECSGGDLDGDIFF 845
V+VT++P LHPGD+++ V ++ +CI+F Q GER P++ SGGDLDGD F
Sbjct: 795 VVVTRSPALHPGDIQIAYNVIPPAGHPLRELKNCIVFSQNGERDLPSQLSGGDLDGDTFN 854
Query: 846 ISWDNDLIPC-ETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHA 904
+ WD ++ T P DY ++ +V +++ FFV++M D LG I+ H++ A
Sbjct: 855 VIWDQRIVSTLRTFPAADYPRVEPLKLNREVESKDMADFFVEFMKADHLGVIAVRHMILA 914
Query: 905 DRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEF-PDFM 951
D + + CL LA LHS AVDF+K+G ++ +P + PDF+
Sbjct: 915 DERDEGTLDADCLKLAALHSKAVDFSKSGIHVDITELPRPPMYRPDFL 962
>gi|170584472|ref|XP_001897023.1| RNA dependent RNA polymerase family protein [Brugia malayi]
gi|158595558|gb|EDP34101.1| RNA dependent RNA polymerase family protein [Brugia malayi]
Length = 1542
Score = 273 bits (698), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 227/776 (29%), Positives = 375/776 (48%), Gaps = 91/776 (11%)
Query: 405 ELETSNYVVKNFAK-YASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRIL 463
E+ +N V+++F + YA +R F +++ +L + RG + I +
Sbjct: 489 EVMMTNRVIRHFGEEYA---LRCVFRDDNGQRL----VPKEFTRGRSLQDQSLIIPDLVY 541
Query: 464 TILQDGIVIGDKHYEFLAFSASQLRNNSVWMFAS---NDEV------SAEDVRGWMGCFN 514
IL G+ I +HY+FLA+S SQ+R+ +M++ NDEV + ED+R WMG F
Sbjct: 542 RILGTGLRIASRHYQFLAWSNSQMRDGGCYMYSDAIVNDEVHGEVVCNVEDIRRWMGDFT 601
Query: 515 KIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEV----TSDGNTYCFSDGIGKISL 570
++V K +RMGQ F+ ++ T+ + D ++ D+ G + FSDG+G+IS
Sbjct: 602 ASKTVPKLMSRMGQCFTQAQPTIKLKKDDWKVEDDIMGGIVHPETGEVFNFSDGVGRISK 661
Query: 571 SFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDR--NSFRKLSL--RRSMLKFESRNRM- 625
+A ++A+ GL TPS +Q+R+ G+KGV+ +D + ++++ R+S KFE +
Sbjct: 662 KYADRIAKTLGLYPTPSCYQVRFKGFKGVLCIDPLLDELDQVNIVFRKSQKKFEEDDESA 721
Query: 626 --LNVTKWSESMPCFLNREIISLLSTLGVKD---------EVFEAMQQQQLILLGKMLIN 674
+ V K+S P LNR +I +L + K ++ + +L L M+ +
Sbjct: 722 AEVEVVKYSMPSPVRLNRPLIMILDQVSDKQGRHLHKKVCNRIHSLLELELDKLAAMMFD 781
Query: 675 REAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVP 734
A + L + ++ G EP+ +L + H + S+ +I++P
Sbjct: 782 ENVATEELSSRLSLPID--FHQLHSNGITFTNEPFFRSLLTAIHRYNIKLHLSKSKIFLP 839
Query: 735 --KGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKN 792
GR + G D+TG+L YGQVFV+ + S V K + G V+VTKN
Sbjct: 840 CSMGRTMYGVIDDTGLLQYGQVFVQYS-----------SSMQYVSAKKIVYTGSVMVTKN 888
Query: 793 PCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDL 852
PC GDVR+ EAVY+ L D I+FP+ G RPH +E +G DLDGD + + +D +L
Sbjct: 889 PCHVAGDVRMFEAVYQDALLH--LCDVIVFPRYGPRPHSDEMAGSDLDGDEYTVIFDKEL 946
Query: 853 IPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKAR 912
E M + T ++ FF+ Y+ D++G +S AHL+ D D AR
Sbjct: 947 FFENNERAMFFPNSLPTEYGTPATTGDMIDFFLKYLSQDSIGRMSNAHLIIEVCD-DIAR 1005
Query: 913 SSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKE-FPDFMEREDKPRYISFGVLGKLYRA 971
KC ++AVDF KTG A+ L+ + E PD+M+ KP Y S +LG+LYR
Sbjct: 1006 --KC-------AVAVDFPKTGVAAKPLLSHEQCEVMPDYMQNMIKPSYRSKRLLGELYRK 1056
Query: 972 T--LDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYG 1029
++ I +I +++ D L + E + + ++ Y + LM+ YG
Sbjct: 1057 ARRVEDISEIVQGTKFADYCDPQLCDESLFHEQSE-LIQESLRLRDEYHSRIQQLMDEYG 1115
Query: 1030 ASTEDEILTGNLRN--RASYLQRDNRRYGDMKDRI--LLSAKNLQNEAKEWFGSSCKENE 1085
S E +++G+ R +++D+ + + D+I L ++ E+F E++
Sbjct: 1116 ISDEASVISGHSMTIKRIIEMEKDDYSFYN-SDKIVELRYSRIFSYFRHEFFKEFGGESD 1174
Query: 1086 HPQL-----------------ASAWYHVTYSPSYCKERMALLSFPWIVGDILLNIK 1124
+ A AWY VTY+ ++ + SFPWIV DILL IK
Sbjct: 1175 FQTVDAFGKREMRWNVALIRKAKAWYTVTYTSAF-RSSSEFRSFPWIVWDILLIIK 1229
>gi|290989465|ref|XP_002677358.1| predicted protein [Naegleria gruberi]
gi|284090965|gb|EFC44614.1| predicted protein [Naegleria gruberi]
Length = 913
Score = 273 bits (698), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 199/639 (31%), Positives = 321/639 (50%), Gaps = 70/639 (10%)
Query: 377 SHKRL------IDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVE 430
SHKR +D N+ + ++TP I LE+ N V++ + +Y F+RVTF +
Sbjct: 291 SHKRQHKSFVKVDDNMFEIRKVMITPTGIKYFPKILESGNRVLRKYKQYEDRFLRVTFCD 350
Query: 431 EDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNN 490
E +++ A + T ++ R+ L +G IG++HYE LA+S SQLR++
Sbjct: 351 EGLNRVSAEKV--------------TNMHPRLEEFLNNGFTIGNRHYEMLAYSNSQLRSH 396
Query: 491 SVWMFASND--EVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTL---VVPVQDVE 545
S W + E+S + +G F+ I+ ++K AAR+GQ FS++ + + V D+
Sbjct: 397 SCWFLNTEGIRELSVSSIIEGLGDFSDIKVMAKYAARIGQCFSNTFNGIKSEFIEVNDI- 455
Query: 546 MIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKC-----GLSHTPSAFQIRYGGYKGVI 600
+ ++E D +DG G++S+SFA QV+++ G ++ PSA Q R GGYKGV+
Sbjct: 456 VYREIERNGDIKENVLNDGCGRMSVSFAEQVSKQMKIRIHGKAYIPSALQFRLGGYKGVV 515
Query: 601 AVDRNSF----RKLSLRRSMLKF-ESRNRMLNVTKWSESMPCF--LNREIISLLSTLGVK 653
D++ + L L +S KF + ++ + +S+ P F LNR+II LLS+ G+
Sbjct: 516 VQDKDVADIFGKDLVLTKSQNKFKDEKSDEFEMVAFSKR-PKFSSLNRQIIILLSSNGLP 574
Query: 654 DEVFEAMQQQQLIL----LGKMLINREAALDVLQKLNGVDSKNIL--------------- 694
D +++ K L R+ V + + G + K ++
Sbjct: 575 DSALMKFVDREIETWRSRTTKKLSIRKLLRKVWENVVGSNIKKVISSEYLDLKAQVLASQ 634
Query: 695 VKMLLQG---YEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNY 751
VK + Q Y NV+P L + NQ S LK+ + V K LL+G D G+L
Sbjct: 635 VKGMSQQHVEYFYNVDPLLCTLCDKILINQFSSLKTN--LPVDKCSLLMGVVDFYGVLED 692
Query: 752 GQVFVRVTMTREELESKDQSFFHRVD-DKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMK 810
+VFV+++ ES ++ + + IV G V VT+NPCLHPGDVR +AV + +
Sbjct: 693 DEVFVQLS----SFESYERDLYDPGSYAEGGIVSGNVFVTRNPCLHPGDVRKFKAVSDDR 748
Query: 811 LEE-KDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSR 869
+ K D I+F QK ++ ++ SGGDLDGD+F + WD +L+ PM +T +
Sbjct: 749 INVLKHLKDVIVFSQKSKQSQASKMSGGDLDGDLFMVCWDPELLNFTEHKPMKHTQLKPL 808
Query: 870 IMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDF 929
+ + I F +Y++ND LG ++ H+ H D+ A CL LA HS VD+
Sbjct: 809 EKNDGFDYKAIRDFLKEYVVNDNLGVVAFMHMEHYDQSSKGALDQNCLDLADYHSHQVDY 868
Query: 930 AKTGAPAEMPLALKPKEFPDFMERE-DKPRYISFGVLGK 967
AKTG +P+ L + P +M + K Y S ++GK
Sbjct: 869 AKTGVRKALPMELVSEYRPHYMPKSFMKKTYHSTKIIGK 907
>gi|393904650|gb|EJD73758.1| RNA dependent RNA polymerase [Loa loa]
Length = 1022
Score = 273 bits (698), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 227/729 (31%), Positives = 362/729 (49%), Gaps = 113/729 (15%)
Query: 487 LRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQ-TLVVPVQDVE 545
+R+N + + A +R +G F++ ++ K +RMGQ F+ +K+ T+ +
Sbjct: 1 MRDNGCYFYDDGKGGQAHKIREQLGKFDRC-NIPKMMSRMGQCFTQAKRCTVTLKRHKYN 59
Query: 546 MIPDVEVTSDGNT--YCFSDGIGKISLSFARQVAQKCGL-SHTPSAFQIRYGGYKGVIAV 602
DV D N Y FSDG GK+S FA ++A GL + PS +QIR+ G KGV++V
Sbjct: 60 KTYDVIGGRDTNQAFYIFSDGAGKVSKEFAEKIALDIGLGTSVPSCYQIRHRGIKGVLSV 119
Query: 603 D---------------------RNSFRKLSL--RRSMLKFES-RNRMLNVTKWSESMPCF 638
D N L++ R S KF++ R+ + + K+S
Sbjct: 120 DPSLDQRKHWAAANNVVDNNKMTNKQNDLAVLFRPSQDKFKAPRDEYIEIVKYSTPTSVC 179
Query: 639 LNREIISLLSTL-GVKD-EVFEAMQQQ-------QLILLGKMLINREAALDVLQKLNGVD 689
LNR +IS+L + G++ V E ++++ Q+ L ML++ E + L +L
Sbjct: 180 LNRPMISILDQVSGMQGFSVHERIRKRIHDLLDIQMTQLADMLMSEEKCREKLNELPW-- 237
Query: 690 SKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPK--GRLLIGCFDETG 747
N+ L +G+ EP+ +L ++ + L L ++ +I VP GR + G DETG
Sbjct: 238 RVNVSRLTLARGFALTQEPFFRSLLRANIKCTLKKLIAKVQIQVPPHFGRSMFGVMDETG 297
Query: 748 ILNYGQVFVRVTMTREELESKDQSFFHRVDDKTS---IVKGKVLVTKNPCLHPGDVRVLE 804
L +GQVFV+ T +S + + K++ I+ GKV++TKNPC+ GDVRV E
Sbjct: 298 QLQWGQVFVQCT----------RSIWLKTPSKSAAKIILVGKVMLTKNPCIVAGDVRVFE 347
Query: 805 AVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYT 864
AV +L VD ++FPQ G RPHP+E +G DLDGD + + WD +L+ EPP+D+T
Sbjct: 348 AVDIPELHH--LVDVVVFPQHGPRPHPDEMAGSDLDGDEYSVIWDPELMFEHNEPPLDFT 405
Query: 865 GRRS--RIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATL 922
S +I++ + E+ KFFV+Y+ D++G IS A LV+AD S C+++A
Sbjct: 406 KSASDNKIVEEEQVDLEMRKFFVNYIKQDSIGTISNAFLVNADL--YGITSEVCINIARK 463
Query: 923 HSMAVDFAKTG-APAEMPLA-----------LKP---KEFPDFMEREDKPRYISFGVLGK 967
HS AVDF KTG AP+ PL L P + +PDFM + +P YIS ++G+
Sbjct: 464 HSKAVDFPKTGNAPS--PLTRQWTQGKNGNILPPERAERWPDFMCKNHEPSYISSRLVGQ 521
Query: 968 LYRAT--LDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALM 1025
LYR LD + + + S I D DLE G+E + VA+ + Y + ++M
Sbjct: 522 LYRRIRLLDDALNLTAAMEGSVTIM---LDPDLEYPGWEQYQNVAKIQLDSYHSHIRSIM 578
Query: 1026 NYYGASTEDEILTG---NLRNRASYLQRDNRRYGD----MKDRILLSAKNLQNEAKEWFG 1078
YG E ++ +G +RNR S D+ + + ++ ++ + ++ + FG
Sbjct: 579 ENYGIEDEGQLFSGFISVIRNRISDRDTDDMSFYNTNHIIEKKVSAVFRAYRHRFFDEFG 638
Query: 1079 ---------------SSCKENE---HPQL-----ASAWYHVTYSPSYCKERMALLSFPWI 1115
+ +E HP L ASA+Y + Y + +LSF W+
Sbjct: 639 GFLESTLPDYDDNQSGNAQERRICIHPSLDMKRKASAYYILCYRNASMDTSYRILSFGWL 698
Query: 1116 VGDILLNIK 1124
V DIL ++K
Sbjct: 699 VWDILCHVK 707
>gi|121716158|ref|XP_001275688.1| rna-dependent rna polymerase [Aspergillus clavatus NRRL 1]
gi|119403845|gb|EAW14262.1| rna-dependent rna polymerase [Aspergillus clavatus NRRL 1]
Length = 1203
Score = 273 bits (698), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 204/651 (31%), Positives = 316/651 (48%), Gaps = 91/651 (13%)
Query: 384 HNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALST 443
N+ ++ ++TP +I GPE E N +++ F + F+RV F +E L ++ T
Sbjct: 419 QNLALIHKVMITPSRITLHGPEPEPFNRILRRFPNHHDYFIRVQFCDEQGGDLHFSSRVT 478
Query: 444 SIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSA 503
+++SR +L +GI I + Y FL +S S LR++SVW SA
Sbjct: 479 Y-----------DEVFSRFKNVLTNGIQIAGRTYYFLGWSHSSLRSHSVW-------ASA 520
Query: 504 EDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQD----VEMIPDVEVTSDGNTY 559
+ +G F+KI S ++CAAR+GQ FS + +PV+D +E +PD+ + DG +
Sbjct: 521 VCIIKALGDFSKITSPARCAARIGQAFSET--PFAIPVEDNTITIEEVPDL-ASKDGQRF 577
Query: 560 CFSDGIGKISLSFAR----QVAQKCGLSHTPSAFQIRYGGYKGVIAVD-RNSFRKLSLRR 614
FSDG+G +SL+ + K G P+ FQIR GG KG+IA+D R + + +R
Sbjct: 578 -FSDGVGSLSLNVLEMIWSNIPPKKG---KPTGFQIRLGGAKGMIAIDSRLTGSVIRIRP 633
Query: 615 SMLKFESRNRMLNVTKW-SESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLI 673
SM+KF+ R L + S+ +P LNR++I +L +GV ++ F +Q Q+L L +
Sbjct: 634 SMIKFQGEMRDLEICDMASKPIPLVLNRQMIKILEDMGVAEDWFFRLQNQELTYLRSITA 693
Query: 674 NREAALDVLQKLNGVDSKNILVKMLLQGYEPNVE---PYLSMMLLSHHENQLSDLKSRCR 730
+ + V K V L ++ Q ++ + P+L ++ + +L LK + R
Sbjct: 694 SAQNTA-VFIKRQAVGDCIGLFRLFRQCHQWKINYKVPFLRSLVEAVILRELRLLKHKAR 752
Query: 731 IYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVT 790
I V KG L G DET L +V+V + + + G VLVT
Sbjct: 753 IPVDKGITLFGIIDETEYLQENEVYVTFNTIQGRPVAPPTA-------------GPVLVT 799
Query: 791 KNPCLHPGDVRV-LEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWD 849
++P L+ GD+++ L V + + +CI+F KG+R P++ SGGDLDGDI+ I WD
Sbjct: 800 RSPALYDGDIQICLNTVPPEDHPLRRHRNCIVFSAKGDRDLPSQLSGGDLDGDIYNIIWD 859
Query: 850 NDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPD 909
+ P T P DY + V + ++ FF+D+M D LG I+ H++ AD+ +
Sbjct: 860 PEARPKRTFAPADYPRVEPVNIGRLVEVHDMADFFIDFMKTDHLGVIAIRHMIMADQLDE 919
Query: 910 KARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEF-PDFM----------------- 951
C LA LHS AVDF+KTG P +M + F PDF+
Sbjct: 920 GTSHPDCRKLAQLHSTAVDFSKTGIPVQMEHLPRGNNFRPDFLAPGPQAYMYNKSAIHMD 979
Query: 952 -----------EREDKPR--YISFGVLGKLYRATLDSIMQIRSNAIWSEKI 989
+ + PR Y S +LGKLYRA I IWS I
Sbjct: 980 QYIARTEYDEDDDTEPPRKYYRSEKILGKLYRA-------IDERKIWSNDI 1023
>gi|302907308|ref|XP_003049617.1| hypothetical protein NECHADRAFT_123067 [Nectria haematococca mpVI
77-13-4]
gi|256730553|gb|EEU43904.1| hypothetical protein NECHADRAFT_123067 [Nectria haematococca mpVI
77-13-4]
Length = 1261
Score = 273 bits (697), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 236/755 (31%), Positives = 360/755 (47%), Gaps = 102/755 (13%)
Query: 304 VLFQLNSLVHNQKVSLVAADAELIQILSGLSMET-----ALMVLQKLHK--LKSICY--- 353
+LFQ+ +LV N + L ++ +L IL ++++ A+ V K L+ I Y
Sbjct: 325 ILFQVQALVWNNYI-LPSSGIQLCDILEQVAIDAKEKGVAIPVTTDAMKTLLQRIPYPCP 383
Query: 354 --DPVSF--VKTQLHVLGRNCKSIPLSSHK------RLIDHNVMSCYRALVTPMKIYCLG 403
DP V V+ K + + +L DH V ++ALVTP ++ G
Sbjct: 384 GTDPAELDVVSIMAEVMNAEYKYREENPQRDRIYGSKLPDHQVW-VFKALVTPTRVLLHG 442
Query: 404 PELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRIL 463
P+ E+ N V++ F F+RV F +ED L N + +SR
Sbjct: 443 PDAESKNRVLRMFPDNNDSFLRVIFCDEDGQDLNFNPRIDN-----------EDTFSRYR 491
Query: 464 TILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASN------DEVSAEDVRGWMGCFNKIR 517
++ DGI I + Y FL FS S LR++S W FAS + + +G F IR
Sbjct: 492 KVMDDGIDIAGRKYTFLGFSHSSLRSHSAW-FASPFVDGNYQSQTISVILEALGDFQDIR 550
Query: 518 SVSKCAARMGQLFSSSKQTLVVPVQD----VEMIPDVEVTSDGNTYCFSDGIGKISLSFA 573
+KCAAR+GQ FS + VP+ + IPD++ T+DG + FSDG+G IS
Sbjct: 551 VPAKCAARIGQAFSET--PYAVPLFENSITTRHIPDIK-TADG-SRVFSDGVGTISQDAL 606
Query: 574 RQVAQKCGL-SHTPSAFQIRYGGYKGVIAVD-RNSFRKLSLRR-SMLKFESRN--RMLNV 628
V + S P+ QIR+GG KG++++D R + +R+ SM+KF S + +
Sbjct: 607 EDVWMYLPMRSAAPTCLQIRWGGCKGMLSLDTRLEGKTFCIRKESMMKFPSNDLTELGIC 666
Query: 629 TKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQ-KLNG 687
S+ + LNR++I +L +G +++ F +Q + L +L + + L+ + G
Sbjct: 667 DTSSKPLRLVLNRQMIKILEDMGTQNDWFFDLQNKALNVLRGVTASAHNTSTFLEYQTIG 726
Query: 688 VD-SKNILVKMLLQ-GYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDE 745
V+ LVK L + G + + +L + +L LK + RI V KG L G DE
Sbjct: 727 VNMGLPKLVKQLDRMGIDYRRDKFLRSAVEHVVLRELRLLKHKARIPVEKGVTLFGVMDE 786
Query: 746 TGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEA 805
TG L QV+V T + R++ ++ G +LVT++P LHPGD++V E
Sbjct: 787 TGFLKERQVYVTYDKTYGVKNGR------RIN--ATLEDGIILVTRSPALHPGDIQVAEM 838
Query: 806 VYEMKLEE-KDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYT 864
V K ++ +CI+F QKG+R P++ SGGDLDGD++ I WD +P + P DY
Sbjct: 839 VTPPKGHPLRNLQNCIVFSQKGDRDLPSQLSGGDLDGDLYNIIWDERAMPEKVFEPADYP 898
Query: 865 GRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHS 924
+D VT ++I FF+++M D LG I+T H++ AD +C+ LA +HS
Sbjct: 899 RVTPVPLDRPVTPKDIADFFINFMRTDILGMIATRHVMLADSHDLGTLHPECISLAEMHS 958
Query: 925 MAVDFAKTGAPAEMPLALKPKEF-PDF----------------------------MERED 955
AVDF+KTG P E+ KP F PDF M
Sbjct: 959 TAVDFSKTGIPVEVKKLPKPPRFRPDFLAMAPPLKLYDLGQIDHIGDPEEYDEDDMMARA 1018
Query: 956 KPRYI-SFGVLGKLYRATLDSIMQIRSNAIWSEKI 989
KP+Y S +LG LYR+ + N IW E I
Sbjct: 1019 KPKYYKSTKILGHLYRS-------VDENKIWHENI 1046
>gi|320593975|gb|EFX06378.1| RNA-dependent RNA polymerase [Grosmannia clavigera kw1407]
Length = 1259
Score = 272 bits (696), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 212/681 (31%), Positives = 337/681 (49%), Gaps = 50/681 (7%)
Query: 300 LSHEVLFQLNSLVHN-----QKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYD 354
L +LFQL +L N V+ +A++ ++Q + +S++ M+ + D
Sbjct: 298 LPFSILFQLQALAWNAFLYPDTVADLASELVVLQKTAPVSVDAMKMLFTDIGWPTPNDAD 357
Query: 355 PVSFVKTQL--HVLG--RNCKSIPLSSHKRLID--HNVMSCYRALVTPMKIYCLGPELET 408
P F L H+L R +S + + L+ N+ R VTP +I GPE E
Sbjct: 358 PSQFEVPALVAHLLKKEREIRS-GYAIREGLLSPSENLAPICRVSVTPTRILLYGPEFEK 416
Query: 409 SNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQD 468
N V++ F F+RV F +E+ L TS + K+Y R + I+++
Sbjct: 417 KNRVLRKFPNQHDCFIRVQFCDENGDSLRLLGRRTSYE----------KVYKRFIDIMKN 466
Query: 469 GIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAE-----DVRGWMGCFNKIRSVSKCA 523
GI I + Y+FL +S S LR +S+W A + + + +G F IRS +KCA
Sbjct: 467 GIQIVGRTYKFLGWSHSSLRAHSMWFTAPFIDDTGRLQTHLTIISTLGDFAGIRSPAKCA 526
Query: 524 ARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLS 583
AR+GQ FS + + + + ++ +V S + FSDG+G ISL A V + S
Sbjct: 527 ARIGQAFSETPYAVPLSEHKISVMLVDDVKSKDGKHVFSDGVGTISLDAAAAVWKYVPKS 586
Query: 584 -HTPSAFQIRYGGYKGVIAVD-RNSFRKLSLRRSMLKFES-RNRMLNVTKWSESMPCFLN 640
P+ FQ+RY G KG++++D R ++ LR SM+KFES L + +++MP +LN
Sbjct: 587 KRNPTCFQVRYAGAKGMLSLDTRLQGSQILLRPSMIKFESNETENLEICDVAKAMPLYLN 646
Query: 641 REIISLLSTLGVKDEVFEAMQQ---QQLILLGKMLINREAALDVLQKLNGVDSKNILVKM 697
R++I +L + V + F +Q QQL L+ N L + +L+
Sbjct: 647 RQMIKILEDMSVPRKWFLRLQNDALQQLRLIASSAYNMAYFLKHQSVGTSIKLHKLLLLT 706
Query: 698 LLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVR 757
G + EP+L + +L LK + RI VP G L G DET L GQV+V
Sbjct: 707 DKLGLDYRTEPFLRRAAEAVVLRELRLLKHKARIPVPFGITLFGVMDETEFLAKGQVYVT 766
Query: 758 VTMTREELESK--DQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVR-VLEAVYEMKLEEK 814
T++ L+ + +Q H V +LVT++P LHPGD++ + +
Sbjct: 767 FE-TKQGLKPQRFEQPPGHAV---------YLLVTRSPALHPGDIQWACNMIPPEGHPLR 816
Query: 815 DYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDL---IPCETEPPMDYTGRRSRIM 871
+ +C++F KG R P++ SGGDLDGDIF + WD ++ + +T +Y + +
Sbjct: 817 ELSNCVVFSAKGARDLPSQLSGGDLDGDIFNLIWDREVCRPVELKTYRAAEYARVPPQNI 876
Query: 872 DHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAK 931
+V E+I +FF+D+M D LG I+T H++ AD+ S C+ +A LHS AVDF+K
Sbjct: 877 WREVQTEDIAQFFIDFMKTDHLGTIATRHMILADQKEMGTLDSDCIAMAELHSTAVDFSK 936
Query: 932 TGAPAEMPLALKPKEF-PDFM 951
TG PA++ + F PDF+
Sbjct: 937 TGIPADLNELRRASPFRPDFL 957
>gi|317158412|ref|XP_001826725.2| rna-dependent rna polymerase [Aspergillus oryzae RIB40]
Length = 1206
Score = 272 bits (696), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 223/747 (29%), Positives = 350/747 (46%), Gaps = 118/747 (15%)
Query: 385 NVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTS 444
N+ +R VTP +I GPE+E N +++ F + F+RV F +E+ L NA
Sbjct: 393 NMTKVHRVNVTPTRITLHGPEMEPQNRILRKFPNHHEYFIRVQFCDENGEDLLFNA---- 448
Query: 445 IQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFAS---NDEV 501
+ Y+ I+ R + I+ GI I + Y FL FS S LR+ +VW F+S +D
Sbjct: 449 ------NVDYK-DIFGRFIDIMTRGIQIAGRTYNFLGFSHSSLRSRAVW-FSSPFVDDNG 500
Query: 502 SAE---DVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQD----VEMIPDVEVTS 554
+ + +G F+ I S ++CAAR+GQ F+ + +VP++ V IPD+ TS
Sbjct: 501 HMQTYFSIVSAIGKFSHITSPARCAARIGQAFTET--PFMVPLEKHGVLVSTIPDL--TS 556
Query: 555 DGNTYCFSDGIGKISLSFARQVAQKCGLSH-TPSAFQIRYGGYKGVIAVD-RNSFRKLSL 612
+ FSDG+G IS + L P+ FQIR GG KG++A D R + +
Sbjct: 557 PDGSRVFSDGVGAISREVVASIWADIPLKRGNPTCFQIRLGGAKGMLAADSRLRTAVIQI 616
Query: 613 RRSMLKFESRNRMLNV---TKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLG 669
R SM+KF+S + M N+ S P LNR++I +L +G + F MQ ++L L
Sbjct: 617 RPSMIKFDSED-MKNLEICNMASRPYPMVLNRQVIKILEDMGASKDWFFQMQNEELTRLQ 675
Query: 670 KMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNV----EPYLSMMLLSHHENQLSDL 725
+ ++ + L+ + + L ++ Q Y + + +L ++ + +L L
Sbjct: 676 SITVSTDKTARFLKDKSVAECIG-LYRLYRQCYWTRLNYKKDGFLRAIVEAVVLRELRLL 734
Query: 726 KSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKG 785
K + RI V KG L G DETG L G+V+V F R++ + + G
Sbjct: 735 KHKARIPVKKGMTLYGVIDETGFLQEGEVYVT---------------FDRMEGRYAAPPG 779
Query: 786 --KVLVTKNPCLHPGDVRVLEAVYEMKLEEKDY-VDCIIFPQKGERPHPNECSGGDLDGD 842
+LVT++P LH GD++ + V + Y +CI+F QKG R P++ SGGDLDGD
Sbjct: 780 PGHILVTRSPALHCGDIQRAQNVIPPEDHPLRYHRNCIVFSQKGSRDLPSKLSGGDLDGD 839
Query: 843 IFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLV 902
++ + WD +L ET P DY S + DV ++++ FFV++M +D LG I+ H+V
Sbjct: 840 LYHVIWDPELESVETFAPADYPRPTSIDIGRDVRVDDMAAFFVEFMRSDILGMIAIRHMV 899
Query: 903 HADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEF-PDFMEREDKPR--- 958
AD+ R + C LA LHS AVDF+KTG P M + + PDF+ + R
Sbjct: 900 MADQAASGTRDTSCRLLAGLHSKAVDFSKTGIPVNMEDMPRVNRYRPDFLAPGPQTRLYN 959
Query: 959 ------------------------------YISFGVLGKLYRATLDSIMQIRSNAIWSEK 988
Y S +LGKLYRA I +IW +
Sbjct: 960 KSKIGLEQHVSHANYDDDDDDADVEEPYRYYKSEKILGKLYRA-------IDEQSIWRKH 1012
Query: 989 I-AEASYDHD----------------LEVDGFEAFLGVAESHKEMYEEEMNALMNYYGAS 1031
+ +E+ D + L E L A+ + Y++ + + M+ Y
Sbjct: 1013 VLSESETDEEFFWNSVIDDCLRRCKSLPRTPKEEHLDEAKRIRAAYDDAIISAMDTYSDH 1072
Query: 1032 -----TEDEILTGNLRNRASYLQRDNR 1053
+E E++ G++ NR R R
Sbjct: 1073 PTKPISELEVVIGSIINRRGVQTRRQR 1099
>gi|83775472|dbj|BAE65592.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 1188
Score = 272 bits (696), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 223/747 (29%), Positives = 350/747 (46%), Gaps = 118/747 (15%)
Query: 385 NVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTS 444
N+ +R VTP +I GPE+E N +++ F + F+RV F +E+ L NA
Sbjct: 393 NMTKVHRVNVTPTRITLHGPEMEPQNRILRKFPNHHEYFIRVQFCDENGEDLLFNA---- 448
Query: 445 IQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFAS---NDEV 501
+ Y+ I+ R + I+ GI I + Y FL FS S LR+ +VW F+S +D
Sbjct: 449 ------NVDYK-DIFGRFIDIMTRGIQIAGRTYNFLGFSHSSLRSRAVW-FSSPFVDDNG 500
Query: 502 SAE---DVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQD----VEMIPDVEVTS 554
+ + +G F+ I S ++CAAR+GQ F+ + +VP++ V IPD+ TS
Sbjct: 501 HMQTYFSIVSAIGKFSHITSPARCAARIGQAFTET--PFMVPLEKHGVLVSTIPDL--TS 556
Query: 555 DGNTYCFSDGIGKISLSFARQVAQKCGLSH-TPSAFQIRYGGYKGVIAVD-RNSFRKLSL 612
+ FSDG+G IS + L P+ FQIR GG KG++A D R + +
Sbjct: 557 PDGSRVFSDGVGAISREVVASIWADIPLKRGNPTCFQIRLGGAKGMLAADSRLRTAVIQI 616
Query: 613 RRSMLKFESRNRMLNV---TKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLG 669
R SM+KF+S + M N+ S P LNR++I +L +G + F MQ ++L L
Sbjct: 617 RPSMIKFDSED-MKNLEICNMASRPYPMVLNRQVIKILEDMGASKDWFFQMQNEELTRLQ 675
Query: 670 KMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNV----EPYLSMMLLSHHENQLSDL 725
+ ++ + L+ + + L ++ Q Y + + +L ++ + +L L
Sbjct: 676 SITVSTDKTARFLKDKSVAECIG-LYRLYRQCYWTRLNYKKDGFLRAIVEAVVLRELRLL 734
Query: 726 KSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKG 785
K + RI V KG L G DETG L G+V+V F R++ + + G
Sbjct: 735 KHKARIPVKKGMTLYGVIDETGFLQEGEVYVT---------------FDRMEGRYAAPPG 779
Query: 786 --KVLVTKNPCLHPGDVRVLEAVYEMKLEEKDY-VDCIIFPQKGERPHPNECSGGDLDGD 842
+LVT++P LH GD++ + V + Y +CI+F QKG R P++ SGGDLDGD
Sbjct: 780 PGHILVTRSPALHCGDIQRAQNVIPPEDHPLRYHRNCIVFSQKGSRDLPSKLSGGDLDGD 839
Query: 843 IFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLV 902
++ + WD +L ET P DY S + DV ++++ FFV++M +D LG I+ H+V
Sbjct: 840 LYHVIWDPELESVETFAPADYPRPTSIDIGRDVRVDDMAAFFVEFMRSDILGMIAIRHMV 899
Query: 903 HADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEF-PDFMEREDKPR--- 958
AD+ R + C LA LHS AVDF+KTG P M + + PDF+ + R
Sbjct: 900 MADQAASGTRDTSCRLLAGLHSKAVDFSKTGIPVNMEDMPRVNRYRPDFLAPGPQTRLYN 959
Query: 959 ------------------------------YISFGVLGKLYRATLDSIMQIRSNAIWSEK 988
Y S +LGKLYRA I +IW +
Sbjct: 960 KSKIGLEQHVSHANYDDDDDDADVEEPYRYYKSEKILGKLYRA-------IDEQSIWRKH 1012
Query: 989 I-AEASYDHD----------------LEVDGFEAFLGVAESHKEMYEEEMNALMNYYGAS 1031
+ +E+ D + L E L A+ + Y++ + + M+ Y
Sbjct: 1013 VLSESETDEEFFWNSVIDDCLRRCKSLPRTPKEEHLDEAKRIRAAYDDAIISAMDTYSDH 1072
Query: 1032 -----TEDEILTGNLRNRASYLQRDNR 1053
+E E++ G++ NR R R
Sbjct: 1073 PTKPISELEVVIGSIINRRGVQTRRQR 1099
>gi|384495849|gb|EIE86340.1| hypothetical protein RO3G_11051 [Rhizopus delemar RA 99-880]
Length = 1099
Score = 272 bits (696), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 187/560 (33%), Positives = 292/560 (52%), Gaps = 45/560 (8%)
Query: 295 RPGFNLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYD 354
R L + L+ L S + +++ D Q L L L+ + K+ +D
Sbjct: 575 RVTLGLDFDTLYSLESAISYNFLNVYNLDRTFYQALKALECSAVREYLEMVVIRKTRLWD 634
Query: 355 PVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVK 414
P++ + Q LG + HK + + ++TP ++ LE N V++
Sbjct: 635 PLADLSDQQKRLG--------AIHK--VPSRCFLVNKVIITPTSVFIEPRSLEVGNRVLR 684
Query: 415 NFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKP---YRTKIYSRILTILQDGIV 471
+F + F+RV F+++ ++++ A KP +Y RI + G+
Sbjct: 685 HFQDHIDRFLRVQFLDDGFNRVCA-----------VRKPGDRMNEALYVRIRKLFDQGLQ 733
Query: 472 IGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFS 531
IGD++YEFLA+S+SQLR + W FAS +++AE +R WMG F++ + VSK AARMGQ FS
Sbjct: 734 IGDRYYEFLAYSSSQLREHGCWFFASGKDLTAEMIRRWMGDFSREKVVSKYAARMGQCFS 793
Query: 532 SSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQI 591
SS +VE IPD++ N Y FSDG+GK+SL+ A++ + L PSA Q+
Sbjct: 794 SSVAICSFHADEVETIPDMK----HNGYIFSDGVGKMSLALAKKTRNQMNLGVDPSALQV 849
Query: 592 RYGGYKGVIAVDRNSFR--KLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLST 649
R GG KGV+AVD N + + LR S +KF++ + L V K + +LNR+II L+S
Sbjct: 850 RLGGSKGVLAVDPNLPKGVHVQLRPSQIKFDTDHLELEVVKIATYRNGYLNRQIIILMSA 909
Query: 650 LGVKDEVFEAMQQQQLILLGKMLINREAALDVLQ-KLNGVDSKNILVKMLLQGYEPNVEP 708
LGV+D + L K+L + AL L + + + N+LV + G+ + +P
Sbjct: 910 LGVRDAYVLELVNTMLQNTEKILTDPLEALYALSPRSDDFGTSNMLVNAIQAGFLKSGDP 969
Query: 709 YLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESK 768
Y+ +L+ + L +LK + ++ VPK LIG DETG+L +VFV+V
Sbjct: 970 YIQNILVLFRCSLLKELKKKAKVLVPKSACLIGVVDETGLLESNEVFVQVW--------- 1020
Query: 769 DQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGER 828
D S ++ ++ +V + +NP LHPGD+RVL+AV +L V ++F KGER
Sbjct: 1021 DNSATGNIN---QVITDRVSIFRNPSLHPGDLRVLQAVDIPELHHLKNV--VVFSSKGER 1075
Query: 829 PHPNECSGGDLDGDIFFISW 848
P+ CSGGDLDGD + W
Sbjct: 1076 DVPSMCSGGDLDGDEYTYEW 1095
>gi|241620373|ref|XP_002408656.1| RNA-directed RNA polymerase, putative [Ixodes scapularis]
gi|215503015|gb|EEC12509.1| RNA-directed RNA polymerase, putative [Ixodes scapularis]
Length = 529
Score = 272 bits (695), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 184/540 (34%), Positives = 273/540 (50%), Gaps = 24/540 (4%)
Query: 506 VRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTS--DGNTYCFSD 563
VR +G + IR SK AR+GQ FS S + VP + D+ + G Y FSD
Sbjct: 1 VRAAIGDLSSIRVPSKYMARLGQAFSQSMGYVTVPQACTRVDRDILLKGRKPGIKYNFSD 60
Query: 564 GIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRN-SFRKLSLRRSMLKFESR 622
G+G+IS S +V PSA QIRYGG KG++ +D ++ R SM K+ S+
Sbjct: 61 GVGRISPSVLARVHAALPAEGKPSAIQIRYGGCKGMLVLDPTLEGDQIVFRDSMFKYPSQ 120
Query: 623 NRMLNVTKWSESMPCFLNREIISLLS-------TLGVKDEVFEAMQQQQLILLGKMLINR 675
+ L + K S LNR +I++LS ++D VF MQQ L L N
Sbjct: 121 SEELFILKTSRPRVVKLNRPMITILSQKMTRSGVQDIEDGVFMRMQQDCLEPYLDSLFND 180
Query: 676 EAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPK 735
+ +LQ + + + ++ G + + EP+ +L + H L DLK + I VP
Sbjct: 181 KGTAALLQSESSL--RMPYRELAEAGLDLHAEPFFRSLLWALHHRCLKDLKDKMNILVPP 238
Query: 736 --GRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNP 793
GR + G DET L YGQV+VR + + D+S + R+ + G+V+VTKNP
Sbjct: 239 RFGRTMFGVLDETATLQYGQVYVRYSTDLDRFGPDDESQY-RLCTTFRLRAGRVMVTKNP 297
Query: 794 CLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI 853
C+HPGD+R+LEAV L DC++FPQ G+RPHP+E +G DLDGD + + W L+
Sbjct: 298 CIHPGDIRLLEAVDVPALSH--IRDCVVFPQIGKRPHPDEMAGSDLDGDEYSVIWYEPLL 355
Query: 854 PCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARS 913
+ PMD+ + + V +E++ F Y++ND +G + +AHL AD +S
Sbjct: 356 FKRNDDPMDFYSSEALEKEGTVQVEDMVDFMCTYIVNDIVGLMGSAHLAWADLLKQGVKS 415
Query: 914 SKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMERE-DKPRYISFGVLGKLYRAT 972
+CL LA S VDFAKTG+ + + KP +PDFME+ +K Y S LG LYR
Sbjct: 416 QRCLVLAKKCSECVDFAKTGSSTRLAQSEKPPRYPDFMEKHAEKYTYPSKRALGLLYRNL 475
Query: 973 LDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGAST 1032
+ A + + + D L V G E F+ A Y+ + +++ YG +
Sbjct: 476 KGMV------ADSAGPVGDVRPDRRLLVPGREEFVEGAREALREYKLALCSILTSYGVGS 529
>gi|358397216|gb|EHK46591.1| hypothetical protein TRIATDRAFT_317554 [Trichoderma atroviride IMI
206040]
Length = 1395
Score = 272 bits (695), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 196/598 (32%), Positives = 312/598 (52%), Gaps = 55/598 (9%)
Query: 391 RALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIF 450
+A+VTP +I GP+ E+ N V++ F ++ FMRV F +ED L AL+++++
Sbjct: 558 KAMVTPTRITLHGPDAESMNRVLRMFPNHSDYFMRVIFGDEDGQDL---ALTSNVKN--- 611
Query: 451 SKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFAS--NDEVSAED--- 505
T ++ R IL+DGI + + +EFL FS S LR++S W A+ +D ++ ++
Sbjct: 612 -----TLVFERYRKILKDGIQVAGRKFEFLGFSHSSLRSHSAWFVAAFVDDSMNLQNNDT 666
Query: 506 VRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQ----DVEMIPDVEVTSDGNTYCF 561
+ +G F+ IR +KCAAR+GQ FS + VP+ ++E I DV+ T+DG F
Sbjct: 667 IIKSLGDFSDIRIAAKCAARIGQAFSETP--YAVPILKCGINIEYIDDVK-TADGKR-VF 722
Query: 562 SDGIGKISLSFARQVAQKCGLSHTPSA------FQIRYGGYKGVIAVD-RNSFRKLSLRR 614
SDG+G IS +V H P A Q+R GG KG++++D R + + + +R+
Sbjct: 723 SDGVGTISWDAMEEV-----WDHLPKASSEATCVQVRLGGIKGMLSLDSRLNGKVICVRK 777
Query: 615 -SMLKFESRNR--MLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKM 671
SM+KF S+++ M S+ M +LNR+ I +L +G E F Q + L +L +
Sbjct: 778 ESMMKFPSKDQTEMGICDTASKPMRTYLNRQTIKILEDMGTNSEWFIDQQNKALNVL-RN 836
Query: 672 LINREAALDVLQKLNGVDSKNILVKMLLQ----GYEPNVEPYLSMMLLSHHENQLSDLKS 727
+ A K V + L +++ G + E ++ ++ +L LK
Sbjct: 837 VTTTAANTSTFLKNQMVGTTAGLPRLIRYLSTIGIDYRRERFMKKVVDHTILRELRLLKH 896
Query: 728 RCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKV 787
+ RI V G L G DETG L GQ++V + + L+ RV K S+ G V
Sbjct: 897 KARIPVDMGVTLFGVMDETGFLEEGQIYVTFNESHDHLQG-------RV--KRSLKDGTV 947
Query: 788 LVTKNPCLHPGDVRVLEAVYEMKLEE-KDYVDCIIFPQKGERPHPNECSGGDLDGDIFFI 846
LVT++P LHPGD+++ + ++ +C++F QKG R P++ SGGDLDGD++ +
Sbjct: 948 LVTRSPALHPGDIQLARMTTPPQGHPLRNLKNCVVFSQKGSRDLPSQLSGGDLDGDLYNV 1007
Query: 847 SWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADR 906
WD +IP + P DY + +D VT ++I FFV +M D LG I+ H + AD
Sbjct: 1008 FWDPFVIPKQYFGPADYPRVKPPELDRAVTRDDIADFFVKFMEADILGIIANRHQMLADY 1067
Query: 907 DPDKARSSKCLHLATLHSMAVDFAKTG-APAEMPLALKPKEFPDFMEREDKPRYISFG 963
+ S+ C+ LA +HS AVD++KTG A + P+ PDF+ R G
Sbjct: 1068 QDEGTLSADCVDLAEMHSTAVDYSKTGIAVRHQDMPKPPRMRPDFLAPAPPTRLFDRG 1125
>gi|340517754|gb|EGR47997.1| predicted protein [Trichoderma reesei QM6a]
Length = 1250
Score = 271 bits (692), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 204/640 (31%), Positives = 320/640 (50%), Gaps = 95/640 (14%)
Query: 391 RALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIF 450
+A+VTP +I GP+ E +N V++ F ++ +RV F +ED L +F
Sbjct: 434 KAVVTPTRIMLQGPDAENNNRVLRMFPHHSDYLLRVIFSDEDGQDL-----------ALF 482
Query: 451 SKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWM---FASNDEV-SAEDV 506
+ I+ R +L+DGI + + YEFL FS S LR++S W F N ++ + E +
Sbjct: 483 PSVDNSAIFGRYRKVLKDGIQVAGRKYEFLGFSHSSLRSHSAWFCAPFIDNMQLHNNESI 542
Query: 507 RGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPV--QDVEMIPDVEVTSDGNTYCFSDG 564
+G F++IR +KCAAR+GQ FS + + + ++ IPDV+ T+DG + FSDG
Sbjct: 543 INSLGDFSEIRIPAKCAARIGQAFSETPYAVDILKCGIGIKYIPDVK-TADG-SRVFSDG 600
Query: 565 IGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVD-RNSFRKLSLRR-SMLKFESR 622
G IS ++ + ++ TP+ Q+R GG KG++++D R + + +R+ SM+KF S
Sbjct: 601 CGTISWDAIEEIWEHLPMTSTPTCLQVRLGGIKGMLSLDSRLKGKVICIRKESMMKFSSS 660
Query: 623 NR-MLNVT-KWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALD 680
++ ML + S+ + LNR+II +L +G E F Q + ALD
Sbjct: 661 DQTMLGICDTASKPLRFVLNRQIIKILEDMGTNAEWFIDQQNK--------------ALD 706
Query: 681 VLQKLNG--VDSKNILVKMLLQGYE--PNVEPYLSMMLLSHHEN-------------QLS 723
VL+ + V++ L L+ P + YLS + + + + +L
Sbjct: 707 VLRNVTATAVNTSTFLEYQLVGTTVGLPKLIKYLSKIGVDYRRDNFMKTVVDHTILEELR 766
Query: 724 DLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIV 783
LK + RI V +G L G DETG L G+++V ++++ RV K S+
Sbjct: 767 LLKHKARIPVDQGVTLFGIMDETGFLEEGEIYVTFDQQYDKVQG-------RV--KHSLK 817
Query: 784 KGKVLVTKNPCLHPGDVRVLEAVYEMKLEE-KDYVDCIIFPQKGERPHPNECSGGDLDGD 842
G VL+T++P LHPGD++ + + D +C++F QKG R P++ SGGDLDGD
Sbjct: 818 DGLVLITRSPALHPGDIQPAQMRTPPEGHPLHDLKNCVVFSQKGTRDLPSQLSGGDLDGD 877
Query: 843 IFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLV 902
++ I WD +IP + Y +D VT ++I FFV +M D LG I+ H V
Sbjct: 878 LYNIFWDPRVIPKQFFTAASYPRVIPPPLDRAVTRDDIADFFVTFMETDILGMIANRHQV 937
Query: 903 HADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEM-PLALKPKEFPDFM---------E 952
AD + +C+ LA LHS AVD++KTG P + L P+ PDFM +
Sbjct: 938 SADAKEEGTLHQECIKLAELHSTAVDYSKTGIPVTVQQLPKAPRMRPDFMAPAPPAHLYD 997
Query: 953 RED--------------------KPRYI-SFGVLGKLYRA 971
R++ KPRY S +LG+LYR
Sbjct: 998 RDEVDHIGDPDSDDDDEDGLGVSKPRYYKSLKILGELYRG 1037
>gi|299116728|emb|CBN76286.1| RNA-dependent RNA polymerase 2 [Ectocarpus siliculosus]
Length = 634
Score = 271 bits (692), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 201/668 (30%), Positives = 294/668 (44%), Gaps = 144/668 (21%)
Query: 385 NVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTS 444
NVM RA VTP+++ C PE E SN V + FA+++ F+RV FV+E+ +L + L
Sbjct: 44 NVM-VPRASVTPLRVVCQPPEQEMSNGVTRRFAEHSDRFLRVNFVDENMGRLQLSPL--- 99
Query: 445 IQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEV-SA 503
+ R+ ++DG+VI + YEFLA+S SQLR ++ + +A D +A
Sbjct: 100 -------------LVPRLEGFMKDGLVIAGRKYEFLAYSGSQLRGHACFFYAEGDGAPTA 146
Query: 504 EDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSD 563
+ +R WMG + I V K AAR+GQ SS+ T+ VP +++PD + Y F+D
Sbjct: 147 DSIRSWMGDMSGIDVVGKHAARLGQSLSSTTSTVEVPPALKKLVPDKKA----GPYEFTD 202
Query: 564 GIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSFRKLSLRRSMLKFESRN 623
G G +S AR GG ++ F +
Sbjct: 203 GCGMMSEGLAR-------------------GG-------------------DVIPFPHAH 224
Query: 624 RMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLIN-----REAA 678
+ V +++ +PC+LNR+ I+LL TLGV D+V E + L K+L EA
Sbjct: 225 TPMQVIQYARQLPCYLNRQFITLLGTLGVPDKVIEERYSAMVSTLDKVLRTMLSDPAEAE 284
Query: 679 LDVLQKLNGVDSKNILVK----------MLLQGYEPNVEPYLSMMLLSHHENQLSDLKSR 728
+ +++ N K M+ G EP+L +L + + + DL+ R
Sbjct: 285 MALVRYYNITSGGKTGRKQVGPLWEALAMVRAGINIRTEPFLQSVLRATRDKAMIDLRHR 344
Query: 729 CRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVL 788
RI+VP L+G DETG+L GQ + +S H ++ SI+
Sbjct: 345 TRIFVPDASCLLGIVDETGLLQPGQASDSLGC---------RSVNHYTANRASIMT---- 391
Query: 789 VTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISW 848
+ C E SGGDLDGD++ + W
Sbjct: 392 -----------------------NADRFGQCT-----------QEMSGGDLDGDLYSVVW 417
Query: 849 DNDLIPCETE---------------PPMDY-----TGRRSRIMDHDVTLEEIHKFFVDYM 888
D DL+P E E P M Y + V ++EI FF+ Y+
Sbjct: 418 DQDLLPPEREGVAGVQGDSENGFNFPAMGYEPPEKPKTSASSSGKGVDMKEIADFFLKYI 477
Query: 889 INDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFP 948
ND LG I+ AHLV AD P AR +CL LA LHS AVDF K+G PA P LK +P
Sbjct: 478 QNDNLGKIANAHLVRADLSPFGARCDECLQLAALHSKAVDFPKSGVPAVFPDELKVDSYP 537
Query: 949 DFMEREDKPRYISFGVLGKLYRAT--LDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAF 1006
DFM +ED Y+S ++G+L+R T + R + D L G+E F
Sbjct: 538 DFMCKEDNMTYLSKKLIGRLFRDTPPAGAANPQRRQQQDERFLGGFELDQSLLAPGYEDF 597
Query: 1007 LGVAESHK 1014
L AE +
Sbjct: 598 LEEAEVER 605
>gi|391864263|gb|EIT73559.1| RNA-directed RNA polymerase QDE-1 [Aspergillus oryzae 3.042]
Length = 1188
Score = 270 bits (691), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 223/747 (29%), Positives = 348/747 (46%), Gaps = 118/747 (15%)
Query: 385 NVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTS 444
N+ +R VTP +I GPE+E N +++ F + F+RV F +E+ L NA
Sbjct: 393 NMTKVHRVNVTPTRITLHGPEMEPQNRILRKFPNHHEYFIRVQFCDENGEDLLFNA---- 448
Query: 445 IQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFAS---NDEV 501
+ Y+ I+ R I+ GI I + Y FL FS S LR+ +VW F+S +D
Sbjct: 449 ------NVDYK-DIFGRFKDIMTRGIQIAGRTYNFLGFSHSSLRSRAVW-FSSPFVDDNG 500
Query: 502 SAE---DVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQD----VEMIPDVEVTS 554
+ + +G F+ I S ++CAAR+GQ F+ + +VP++ V IPD+ TS
Sbjct: 501 HMQTYFSIVSAIGKFSHITSPARCAARIGQAFTET--PFMVPLEKHGVLVSTIPDL--TS 556
Query: 555 DGNTYCFSDGIGKISLSFARQVAQKCGLSH-TPSAFQIRYGGYKGVIAVD-RNSFRKLSL 612
+ FSDG+G IS + L P+ FQIR GG KG++A D R + +
Sbjct: 557 PDGSRVFSDGVGAISREVVASIWADIPLKRGNPTCFQIRLGGAKGMLAADSRLRTAVIQI 616
Query: 613 RRSMLKFESRNRMLNV---TKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLG 669
R SM+KF+S + M N+ S P LNR++I +L +G + F MQ ++L L
Sbjct: 617 RPSMIKFDSED-MKNLEICNMASRPYPMVLNRQVIKILEDMGASKDWFFQMQNEELTRLQ 675
Query: 670 KMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNV----EPYLSMMLLSHHENQLSDL 725
+ ++ + L+ + + L ++ Q Y + + +L ++ + +L L
Sbjct: 676 SITVSTDKTARFLKDKSVAECIG-LYRLYRQCYWTRLNYKKDGFLRAIVEAVVLRELRLL 734
Query: 726 KSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKG 785
K + RI V KG L G DETG L G+V+V F R++ + + G
Sbjct: 735 KHKARIPVKKGMTLYGVIDETGFLQEGEVYVT---------------FDRMEGRYAAPPG 779
Query: 786 --KVLVTKNPCLHPGDVRVLEAVYEMKLEEKDY-VDCIIFPQKGERPHPNECSGGDLDGD 842
+LVT++P LH GD++ + V + Y +CI+F QKG R P++ SGGDLDGD
Sbjct: 780 PGHILVTRSPALHCGDIQRAQNVIPPEDHPLRYHRNCIVFSQKGSRDLPSKLSGGDLDGD 839
Query: 843 IFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLV 902
++ + WD +L ET P DY S + DV ++++ FFV++M +D LG I+ H+V
Sbjct: 840 LYHVIWDPELESVETFAPADYPRPTSIDIGRDVRVDDMAAFFVEFMRSDILGMIAIRHMV 899
Query: 903 HADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEF-PDFMEREDKPR--- 958
AD+ R + C LA LHS AVDF+KTG P M + + PDF+ + R
Sbjct: 900 MADQAASGTRDTSCRLLAGLHSKAVDFSKTGIPVNMEDMPRVNRYRPDFLAPGPQTRLYN 959
Query: 959 ------------------------------YISFGVLGKLYRATLDSIMQIRSNAIWSEK 988
Y S +LGKLYRA I +IW +
Sbjct: 960 KSKIGLEQHVSHANYDDDDDDADVEEPYRYYKSEKILGKLYRA-------IDEQSIWRKH 1012
Query: 989 I-AEASYDHD----------------LEVDGFEAFLGVAESHKEMYEEEMNALMNYYGAS 1031
+ +E+ D + L E L A+ + Y++ + + M+ Y
Sbjct: 1013 VFSESETDEEFFWNSVIDDCLRRCKSLPRTPREEHLDEAKRIRAAYDDAIISAMDTYSDH 1072
Query: 1032 -----TEDEILTGNLRNRASYLQRDNR 1053
E E++ G++ NR R R
Sbjct: 1073 PTKPINELEVVIGSIINRRGVQTRRQR 1099
>gi|308476834|ref|XP_003100632.1| CRE-RRF-1 protein [Caenorhabditis remanei]
gi|308264650|gb|EFP08603.1| CRE-RRF-1 protein [Caenorhabditis remanei]
Length = 1680
Score = 270 bits (691), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 225/841 (26%), Positives = 380/841 (45%), Gaps = 129/841 (15%)
Query: 391 RALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIF 450
+ + TP ++ + PE N V++ F K + +RVTF ++ +L A+ +
Sbjct: 517 KIVFTPTRVIYIAPETIMGNRVLRRFDKDGTRVIRVTFRDDSNGRLRASTTGEEL----- 571
Query: 451 SKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASND----------- 499
I + +G+ + ++ Y FL S SQ+R+N + +
Sbjct: 572 -------IDKTAMKFFSEGVKVANRDYGFLGCSNSQMRDNGAYFMEKSTFGQRQRLLKNN 624
Query: 500 --------EVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLV-VPVQDVEMIPDV 550
+ +VR +G F I +V K AR+GQ F+ S+ T V + D D
Sbjct: 625 PNANLIGFQPKILEVRRHLGRFETIENVPKMMARLGQCFTQSRLTGVELERSDYCTTFDY 684
Query: 551 EVTSD----GNTYCFSDGIGKISLSFARQVAQKCGLS-HTPSAFQIRYGGYKGVIAVDR- 604
E G Y +SDG+G +S FA+++A+ PS QIR+ G KGVIA+D
Sbjct: 685 EGAKTKPIVGKCYTYSDGVGIMSYGFAQRLARSMNFGISVPSCLQIRFRGMKGVIAIDPF 744
Query: 605 -------------------NSFRKLSLRRSMLKFESRN---RMLNVTKWSESMPCFLNRE 642
N K R S +KF +++ + + K+S + LN+
Sbjct: 745 YDEVSEWAQANGIQSYDVPNLDLKCQFRPSQIKFPAKSIPGDQIEMVKFSSPVLVALNKP 804
Query: 643 IISLLSTLGVKDEV---------FEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNI 693
I++L + + E + +Q++ K + + + L++ +
Sbjct: 805 FINILDQVSEMQSIECHRRVTGRIEELMDRQIVSFAKQMNDELYCRNKLKEFPRRIDIDF 864
Query: 694 LVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPK--GRLLIGCFDETGILNY 751
L +M G+ EP+ ++ + + ++ + +I +PK GR ++G DETG L Y
Sbjct: 865 LKRMW--GFTLCNEPFFRSLIKASIKFSITKQLRKEQIQIPKELGRSMLGIVDETGRLQY 922
Query: 752 GQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKL 811
GQ+FV+ T E + H + +V G VL+TKNPC+ GDVR+ EAV +L
Sbjct: 923 GQIFVQYTRNSNEKLPPRSNMQHMKVQGSQVVTGTVLLTKNPCIVTGDVRIFEAVDIPEL 982
Query: 812 EEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRI- 870
D ++FPQ G RPHP+E +G DLDGD + + WD L+ + E P D+T + +
Sbjct: 983 HH--LCDVVVFPQHGPRPHPDEMAGSDLDGDEYSVIWDQQLLLDKNEAPFDFTVEKKEMP 1040
Query: 871 MDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFA 930
D ++ + +H+F+V Y+ D++G IS HL ++D+ +R C+ LA + AVDF
Sbjct: 1041 YDREMIDQLMHEFYVKYLKLDSVGTISNNHLHNSDQYGLNSRV--CMDLAKKNCQAVDFT 1098
Query: 931 KTGAPAEMPLALK-----------PKEF----PDF-MEREDKPRYISFGVLGKLYR--AT 972
K+G P PL K P E PD+ + ++ P Y++ + G+L+R
Sbjct: 1099 KSGEPP-APLTKKWARDPETGEAVPPELAERVPDYHVGNDNAPVYVTPRLCGRLFREFQA 1157
Query: 973 LDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGAST 1032
+D +++I + E+ E D ++++G+E +L AE Y ++ ++M YG +
Sbjct: 1158 IDDVIRI---SEEREEQYEIEIDESIKMEGYENYLTCAEKELANYNGQLRSIMETYGIQS 1214
Query: 1033 EDEILTG---NLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAK----EWFG---SSCK 1082
E EI++G +RNR S +D+ + + I +L E + E FG + C
Sbjct: 1215 EGEIMSGCILEMRNRISDKDQDDMSFFNTNQMIETRMTSLVCEFRKRFFEEFGGYLAVCT 1274
Query: 1083 E--------------NEHP-----QLASAWYHVTYSPSYCKERMALLSFPWIVGDILLNI 1123
+ E P Q A+AWY Y + LSF WI D+L +
Sbjct: 1275 QLPNTFDANNSLTYRCEMPSELMMQKATAWYRACYKFAQKSRETRKLSFGWIAYDVLAKV 1334
Query: 1124 K 1124
K
Sbjct: 1335 K 1335
>gi|151370755|gb|ABS11001.1| RNA-dependent RNA polymerase 1 [Nicotiana clevelandii]
Length = 243
Score = 270 bits (690), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 135/228 (59%), Positives = 171/228 (75%)
Query: 455 RTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFN 514
RT IY RIL+ L++G VIGDK +EFLAFS+SQLR+NSVWMFAS ++A D+R WMG F
Sbjct: 16 RTDIYLRILSTLRNGFVIGDKRFEFLAFSSSQLRDNSVWMFASRPGLTANDIRKWMGEFQ 75
Query: 515 KIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFAR 574
+IR+V+K AAR+GQ F SS++TL V +VE+IPDV + G Y FSDGIGKIS FAR
Sbjct: 76 QIRNVAKYAARLGQSFGSSRETLSVGRHEVEVIPDVVCSLHGTNYIFSDGIGKISADFAR 135
Query: 575 QVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSES 634
+VA KCGL +TP +FQIRYGGYKGV+AVD S KLSLR SMLK+ES N L+V WS+
Sbjct: 136 RVAIKCGLQYTPFSFQIRYGGYKGVVAVDPYSSMKLSLRNSMLKYESNNIKLDVLGWSKY 195
Query: 635 MPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVL 682
PC+LNR++++LLSTLGVKD+VFE Q + + L +L + A + L
Sbjct: 196 QPCYLNRQLVTLLSTLGVKDDVFEQKQNEAVDQLDAILHDSLKAQEAL 243
>gi|400595821|gb|EJP63611.1| RNA dependent RNA polymerase [Beauveria bassiana ARSEF 2860]
Length = 1328
Score = 270 bits (689), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 190/581 (32%), Positives = 301/581 (51%), Gaps = 44/581 (7%)
Query: 391 RALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIF 450
+A+VTP ++ GP+ E+ N V++ F F+RVTF +ED S L N
Sbjct: 483 KAMVTPTRVILGGPDPESKNRVLRMFHDRTDYFLRVTFTDEDGSDLNFNHR--------V 534
Query: 451 SKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFAS--NDEVSAED--- 505
S Y +Y ++++ GI + + + FL FS S LR++S W A ++ + +D
Sbjct: 535 SNDY---VYDHYRSVMKQGIEVAGRRFSFLGFSHSSLRSHSAWFMAPFVDNRMGRQDYAT 591
Query: 506 VRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEM--IPDVEVTSDGNTYCFSD 563
V +G F +IR +KCAAR+GQ FS + + + + + I DV D + FSD
Sbjct: 592 VLNSLGDFREIRIPAKCAARIGQAFSETPYAVSLRGSSIVISYIEDVRSYVD-ESRVFSD 650
Query: 564 GIGKISLSFARQVAQKCGLS-HTPSAFQIRYGGYKGVIAVD-RNSFRKLSLR-RSMLKFE 620
G+G IS + L+ +P+ QIR G KG++++D R +++ +R SM+KF
Sbjct: 651 GVGTISQGALEEFWDVLPLNLGSPTCVQIRVAGIKGMLSLDPRLLGKQICIRAESMMKFP 710
Query: 621 SRNRM-LNVTK-WSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAA 678
SR+ + + + + + + LNR++I +L +G F AMQ + L L +
Sbjct: 711 SRDFVEIGICEVAARPLRLVLNRQMIKILEDMGTNRTWFRAMQAKALETLRGVTATAANT 770
Query: 679 LDVLQKLNGVDSK----NILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVP 734
L+ GV S + +M G + +P+L ++ +L LK + RI +
Sbjct: 771 CTFLE-YQGVGSSIRLPRFIRRMHAHGIDYRGDPFLKGVVEYVVLRELRLLKHKARIPIE 829
Query: 735 KGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPC 794
KG L G DETG L G++++ R KD ++D S+V G V+VT++P
Sbjct: 830 KGVTLFGVMDETGFLKEGEIYIH--YDRRAPGRKDG-----IED--SLVDGPVVVTRSPA 880
Query: 795 LHPGDVRVLEAVYEM-KLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI 853
LHPGD+++ + V K + +CI+F Q+G R P++ SGGDLDGD + + WD +
Sbjct: 881 LHPGDIQLAKMVTPPEKHPLRALRNCIVFSQRGGRDLPSQLSGGDLDGDKYNVIWDGGAL 940
Query: 854 PCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARS 913
P P Y + + +D DVT ++I FF+++M D LG I+ HL++AD P A
Sbjct: 941 PRSVFAPASYPRNKPQPLDRDVTRDDIASFFIEFMRTDVLGLIANRHLMYADIQPAGADD 1000
Query: 914 SKCLHLATLHSMAVDFAKTGAPA---EMPLALKPKEFPDFM 951
C+ LA LHS AVD++KTG P E+P +PK PDFM
Sbjct: 1001 PTCIKLAELHSTAVDYSKTGIPPLINEIP--RQPKTKPDFM 1039
>gi|330921324|ref|XP_003299375.1| hypothetical protein PTT_10351 [Pyrenophora teres f. teres 0-1]
gi|311326958|gb|EFQ92511.1| hypothetical protein PTT_10351 [Pyrenophora teres f. teres 0-1]
Length = 1237
Score = 270 bits (689), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 189/590 (32%), Positives = 308/590 (52%), Gaps = 49/590 (8%)
Query: 384 HNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALST 443
+++ Y+A VTP I GP+ + SN +++ + FMRV F +ED LS
Sbjct: 436 YHLALTYKATVTPTGILLRGPDWDVSNRILRKYGTRTEYFMRVFFADED-------GLS- 487
Query: 444 SIQRGIFSKPYRTK--IYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFA----S 497
+F P ++ +Y R ++L++GI + ++ Y+FL FS + LR + W A +
Sbjct: 488 -----VFHDPRASQDNVYERFRSVLRNGISVSERTYQFLGFSHASLRTHQAWFMAPFEMN 542
Query: 498 NDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGN 557
A D+ +G F+ I ++C+AR+GQ FS + VPV + + + N
Sbjct: 543 GTRFRARDIISDLGDFSHIHCSARCSARIGQAFSDT--IFSVPVSSTAYVTETKPDIVRN 600
Query: 558 TYCFSDGIGKISLSFARQVAQKCGL---SHTPSAFQIRYGGYKGVIAVDRN-SFRKLSLR 613
FSDG G ISL R+V + P+ QIR+ G KGV+++D + + +L +R
Sbjct: 601 GRTFSDGCGTISLEILRKVWNTLPPERKTQRPTILQIRFRGAKGVLSLDESLAGEQLHIR 660
Query: 614 RSMLKFESRN--RMLNVTKWS-ESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGK 670
+SM K+ ++ R L + + + + FLN + I +L LGV F+A+Q + + L K
Sbjct: 661 QSMTKYIAKETWRDLELCGAAYKPLQVFLNHQFIKILEDLGVPARNFKAVQDEAVNAL-K 719
Query: 671 MLINR--EAALDVLQKLNGVDSK-NILVKMLLQ-GYEPNVEPYLSMMLLSHHENQLSDLK 726
M+ AA + +GV +K L +++ Q G + + +L+ ++ L LK
Sbjct: 720 MITEHPLNAASFLEYSHSGVYAKVPRLFELMHQIGLSFHADRFLTDIVEVAAMTNLRSLK 779
Query: 727 SRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGK 786
R RI + +G LL G DET L GQV++ T++ +S R+ +V +
Sbjct: 780 YRARIPIEQGHLLYGIMDETNFLQEGQVYI---ATQDYEKSGSGKLQRRI-----LVGER 831
Query: 787 VLVTKNPCLHPGDVRVLEAV-YEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFF 845
+++T+ P LHPGDV+++ AV + +C++F Q+G R P++ SGGDLDGD+F
Sbjct: 832 IVITRAPALHPGDVQLVTAVDVPANSSLRALHNCVVFSQRGARDLPSQLSGGDLDGDLFH 891
Query: 846 ISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHAD 905
I +D L+P T PP DY +R + V + +I FF+++M D LG IS H + AD
Sbjct: 892 IIYDQRLVPDFTVPPADYKSNGARDLGRPVEVNDIVDFFIEHMNMDRLGQISNKHKIRAD 951
Query: 906 RDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEF----PDFM 951
+ + +CL LA L S AVDF+K+G PA+ ++ P+ F PDFM
Sbjct: 952 KS-TGTKDPECLLLAQLASDAVDFSKSGIPAD--ISKIPRGFDHIRPDFM 998
>gi|17506499|ref|NP_492132.1| Protein EGO-1 [Caenorhabditis elegans]
gi|8886068|gb|AAF80367.1| RNA-directed RNA polymerase related EGO-1 [Caenorhabditis elegans]
gi|14530420|emb|CAB01701.2| Protein EGO-1 [Caenorhabditis elegans]
Length = 1632
Score = 269 bits (688), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 214/850 (25%), Positives = 389/850 (45%), Gaps = 147/850 (17%)
Query: 391 RALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIF 450
+ + TP ++ + PE N V++ + + +R+TF ++D K+ N ST +++ +
Sbjct: 493 KIIFTPTRVIYVAPETLMGNRVLRRYDHDGTRVLRITFRDDDNQKMRTNKTSTMLEKTVN 552
Query: 451 SKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFAS------------- 497
L++GI + +++ +L S SQ+R+N +
Sbjct: 553 Q-------------YLKNGITVAGRNFGYLGSSNSQMRDNGAYFMEKYSSSQCREYERIY 599
Query: 498 --------NDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPD 549
N ++ A R +G F I ++ K AR+GQ F+ S+ + V ++ +
Sbjct: 600 QIKPPITFNPKIQA--ARKNLGRFETIDNIPKMMARLGQCFTQSRLS-GVNLERCTYMTT 656
Query: 550 VEVTS----DGNTYCFSDGIGKISLSFARQVAQKCGLSH-TPSAFQIRYGGYKGVIAVDR 604
++T G+ Y FSDG+G +S FA+ V++ PS FQ R+ G KGVI+++
Sbjct: 657 YDLTGGKNLKGDEYTFSDGVGMMSYRFAQMVSEVMDFGKGVPSCFQFRFRGMKGVISIEP 716
Query: 605 --NSFRKLSL-------------------RRSMLKFESRNR---MLNVTKWSESMPCFLN 640
++ R+ S+ R S +KF S+ + + K+S +P LN
Sbjct: 717 LLDNLRQWSISYNISKPSDDSSWSLNCMFRPSQIKFISKRHPRDQVEIVKYSSPVPVALN 776
Query: 641 REIISLLSTLGVKDEV---------FEAMQQQQLILLGKMLINREAALDVLQKLNGVDSK 691
+ I++L + + E + +Q++ + +++ + L++L +
Sbjct: 777 KPFINILDQVSEMQSLECHRRVTNRIEELLDRQMLSFAQQMVDETFCRNRLKEL----PR 832
Query: 692 NILVKMLLQ--GYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVP--KGRLLIGCFDETG 747
+ + L G+ + EP+ ++ + + ++ + +I +P GR ++G DETG
Sbjct: 833 RVDIDYLRTTWGFTLSSEPFFRSLIKASIKFSITRQLRKEQIPIPCDLGRSMLGVVDETG 892
Query: 748 ILNYGQVFVRVTMTRE-ELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAV 806
L YGQ+FV+ T +L K+ + ++ G VL+TKNPC+ GDVR+ EAV
Sbjct: 893 RLQYGQIFVQYTKNLALKLPPKNAA--------RQVLTGTVLLTKNPCIVAGDVRIFEAV 944
Query: 807 YEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGR 866
+L D ++FPQ G RPHP+E +G DLDGD + I WD L+ + E P D+T
Sbjct: 945 DIPELHH--MCDVVVFPQHGPRPHPDEMAGSDLDGDEYSIIWDQQLLLDKNEDPYDFTSE 1002
Query: 867 RSRI-MDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSM 925
+ + D + + +F+V Y+ D++G IS +HL ++D+ AR C+ LA +
Sbjct: 1003 KQKASFKEDEIDDLMREFYVKYLKLDSVGQISNSHLHNSDQYGLNARV--CMDLAKKNCQ 1060
Query: 926 AVDFAKTGAP--------------AEMPLALKPKEFPDF-MEREDKPRYISFGVLGKLYR 970
AVDF K+G P EM + + PD+ M + P Y+S + GKL+R
Sbjct: 1061 AVDFTKSGQPPDELERKWRKDEETGEMIPPERAERVPDYHMGNDHTPMYVSPRLCGKLFR 1120
Query: 971 --ATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYY 1028
+D +++I ++ E S D +++DG+ ++ A++ Y ++ ++M Y
Sbjct: 1121 EFKAIDDVLKISEE---RDEQVEISIDETIKIDGYTEYMASAKNDLARYNAQLRSMMENY 1177
Query: 1029 GASTEDEILTG---NLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKE---------W 1076
G TE E+ +G ++RNR S +D+ + + I NL + +E W
Sbjct: 1178 GIKTEGEVFSGCIVDMRNRISDKDQDDMSFFNTNQMIETKLTNLFKKYREIFFEEFEGGW 1237
Query: 1077 FGSS-------------CKENEHPQL-----ASAWYHVTYSPSYCKERMALLSFPWIVGD 1118
G++ ++ P + A AWY Y + LSF W+ D
Sbjct: 1238 EGNTEAFSRYGRDSNILQRQCRAPTVQMMKKAVAWYRACYEEARITRENKKLSFAWLAYD 1297
Query: 1119 ILLNIKSVNS 1128
++ +K S
Sbjct: 1298 VIAKVKQDKS 1307
>gi|429964430|gb|ELA46428.1| hypothetical protein VCUG_02106 [Vavraia culicis 'floridensis']
Length = 2289
Score = 269 bits (687), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 211/687 (30%), Positives = 314/687 (45%), Gaps = 184/687 (26%)
Query: 394 VTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKP 453
V P+ I C+ P+ SN +++NF S+ +R+TF + +K
Sbjct: 748 VHPLAIVCMYPKNNLSNRILRNF----SNMIRITFKD--------------------TKD 783
Query: 454 YRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFA----SNDEVSAEDVRGW 509
T Y R I+ +GI I D+ Y F+A S+SQLR NS W + +N + ++ VR W
Sbjct: 784 ESTMEYIR--EIMSNGITI-DRPYYFVATSSSQLRANSAWFISPYRKNNVLIGSDYVRNW 840
Query: 510 MGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNT----------- 558
MG N ++ K R+G SS+ + V+ + + ++ S GN+
Sbjct: 841 MGVIN-CDNIGKYMIRVGLGLSSTFNMFEI----VDYVEEDDIVSYGNSGSVSYGNSGSV 895
Query: 559 ---------------------------------------YCFSDGIGKISLSFARQVAQK 579
Y ++DGIG+IS A VA+K
Sbjct: 896 STSNSGSVSTSSNKNNNSSTSNSSTINTTNAITNNVNDEYVWTDGIGRISNRVADMVAKK 955
Query: 580 CGLSHTPSAFQIRYGGYKGVIAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFL 639
L+ TP+AFQIR+ GYKGV+ V N L LR+SM KF+S +L V +S+S+ C+L
Sbjct: 956 LKLTSTPTAFQIRFAGYKGVL-VRANIPHDLMLRKSMRKFKSTYNVLEVVSYSQSIECYL 1014
Query: 640 NREIISLLSTLGVKDEVFEAMQQQQLI---------LLGKMLINREAALDVLQKLNGVDS 690
NR+II +L LGV F +Q + L+ L+GK R + + ++ +++G
Sbjct: 1015 NRQIIMILEGLGVPKHNFICLQNEYLMHMYRAINHSLIGKYC--RISGVALVDRMSGALL 1072
Query: 691 KNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILN 750
+ +M +G RI+V G +L+G DE G+L
Sbjct: 1073 GRLFREMCAKG----------------------------RIFVKNGIVLMGVIDEEGVLG 1104
Query: 751 YGQVFVRV-----------------------TMTREELESKDQSFFHR---------VDD 778
+VF+R+ M ++EL + S R DD
Sbjct: 1105 ENEVFLRIYEDDGDVSGGRSKRMRSNEIGAEEMRKKELFERALSVVDRSGVGTADSSADD 1164
Query: 779 KTS-----------IVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGE 827
+ +V G +V KNPCLHPGD+R ++ VY+ +L Y + ++F +KG
Sbjct: 1165 INTSTGGGVLRDDGVVVGGAIVAKNPCLHPGDIRKVQCVYKKELMH--YKNVLVFSKKGR 1222
Query: 828 RPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDY 887
RP N CSG DLDGD++F+SWD LIP P +Y +H + +++ FF +
Sbjct: 1223 RPVFNMCSGSDLDGDLYFVSWDARLIPPIEHFPQNYQSSSYLSKEH-IVAQDMVNFFTRF 1281
Query: 888 MINDTLGAISTAHLVHAD----RDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALK 943
D LG IS AHLV++D DP + L LA L SM VDF KTG A +P L+
Sbjct: 1282 AKEDELGKISNAHLVYSDVHGITDP------QALKLAYLFSMGVDFPKTGYIARLPQNLE 1335
Query: 944 PKEFPDFMEREDKPRYISFGVLGKLYR 970
P E+PDFMER Y S V+G +YR
Sbjct: 1336 PYEYPDFMER--MRSYESVRVMGMMYR 1360
>gi|453081039|gb|EMF09089.1| RdRP-domain-containing protein [Mycosphaerella populorum SO2202]
Length = 1253
Score = 269 bits (687), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 195/581 (33%), Positives = 303/581 (52%), Gaps = 49/581 (8%)
Query: 390 YRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGI 449
+R +VTP I GPE E +N V++ A+ +F+R+ F +ED ++ +
Sbjct: 439 HRVVVTPTGIRLEGPEPEPTNRVLRLHAQNTDNFVRMVFQDEDGGRVKFD---------- 488
Query: 450 FSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFA----SNDEVSAED 505
+S Y+ + R IL GI I K + FL FS S LR+ S W A + + AE
Sbjct: 489 WSSDYQRIYHERFQGILDKGITIAGKSFTFLGFSHSSLRSQSCWFMAPFVKAGSLMFAEK 548
Query: 506 VRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGI 565
V +G F+ IR+ +KCAAR+GQ F+ + + V +Q ++ EV +G+ F+DG
Sbjct: 549 VIKELGNFSGIRTPAKCAARIGQNFTDTNTS--VRLQRDQVFELAEVVRNGHD--FADGA 604
Query: 566 GKISLSFARQVAQKCGLSH--TPSAFQIRYGGYKGVIAVD-RNSFRKLSLRRSMLKF--E 620
G IS +V + G P+A QIR+ G KG++A D R ++L LR +M K+
Sbjct: 605 GTISKGLLEEVWKVYGTKRMLKPTALQIRFQGAKGMVAQDTRLPGKRLMLRNNMRKYLTG 664
Query: 621 SRNRM-LNVTKWS-ESMPCFLNREIISLLSTLGVKDEVFEAMQQ---QQLILLGKMLINR 675
+ + M L + + +P LNR I +L L V ++ F +Q ++L ++ + IN
Sbjct: 665 ADDHMDLEICGAAFRPLPMILNRGFIKILEDLAVPEQSFINLQNKAMERLRMMTQSAINT 724
Query: 676 EAALDVLQ--KLNGVDSKNILVKMLLQ-GYEPNVEPYLSMMLLSHHENQLSDLKSRCRIY 732
LD + K +G+ S L++ L Q G + + + +L + ++L D+K R RI
Sbjct: 725 GTLLDEVHTSKASGLPS---LIRYLGQIGLDYHHDDFLYAAVELAVISELRDIKHRGRIP 781
Query: 733 VPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKN 792
VPKG L G DETG L G++FV R K+ +V+ KV++T++
Sbjct: 782 VPKGVTLFGVPDETGYLKEGEIFV--ITERGPTGGKE-----------ILVRDKVIITRS 828
Query: 793 PCLHPGDVRVLEAV-YEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDND 851
P LHPGD+++ +AV + + ++F + G+R P++ SGGDLDGD++ + WD
Sbjct: 829 PALHPGDIQLAKAVDVPPGNSNRQLSNVVVFSKWGQRDLPSKLSGGDLDGDLYNVIWDET 888
Query: 852 LIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKA 911
LIP P Y + DVT +++ FFV +M ND LG I+ HL AD+ P
Sbjct: 889 LIPWMIYAPAQYPRVPPVELPRDVTRKDMSDFFVTFMENDKLGLIANQHLQLADQRPMGT 948
Query: 912 RSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEF-PDFM 951
C+ LA L S AVD++KTG PA M A +P +F PD+M
Sbjct: 949 LDPDCIKLAALASTAVDYSKTGIPANMGTAPRPAKFKPDYM 989
>gi|308476844|ref|XP_003100637.1| hypothetical protein CRE_20435 [Caenorhabditis remanei]
gi|308264655|gb|EFP08608.1| hypothetical protein CRE_20435 [Caenorhabditis remanei]
Length = 1685
Score = 269 bits (687), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 222/853 (26%), Positives = 381/853 (44%), Gaps = 153/853 (17%)
Query: 391 RALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIF 450
+ + TP ++ + PE N V++ + + +R+TF ++D K+ N S + + +
Sbjct: 547 KIVFTPTRVIYVAPETLMGNRVLRRYDHDGTRVLRITFRDDDNQKMRTNKTSMLLDKTVH 606
Query: 451 SKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFAS------------- 497
T L+DGI + + + +L S SQ+R+N +
Sbjct: 607 -------------TYLRDGITVAGRDFGYLGSSNSQMRDNGAYFMEKYSSSQCREYQSRT 653
Query: 498 --------NDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPD 549
N ++ A R +G F I ++ K AR+GQ F+ S+ + V ++ +
Sbjct: 654 GVKPPIDFNPKIQA--ARKNLGRFETIDNIPKMMARLGQCFTQSRLS-GVNLERCTYMTT 710
Query: 550 VEVTSDGNT----YCFSDGIGKISLSFARQVAQKCGLSH-TPSAFQIRYGGYKGVIAVD- 603
++T N Y FSDG+G +S FA+ V+ PS FQ R+ G KGVIAV+
Sbjct: 711 YDLTGGKNVKRDEYTFSDGVGMMSHHFAQMVSHVMDFGKGVPSCFQFRFRGMKGVIAVEP 770
Query: 604 ----------RNSFRKLS----------LRRSMLKFESRNR---MLNVTKWSESMPCFLN 640
N + S R S +KF S+ + + K+S +P LN
Sbjct: 771 LLDNIRQWFLENGIPEASEETSWNLNCVFRPSQIKFISKRHPRDQVEIVKYSSPVPVALN 830
Query: 641 REIISLLSTLGVKDEV---------FEAMQQQQLILLGKMLINREAALDVLQKLNGVDSK 691
+ I++L + + E + +Q++ + +++ + L++L +
Sbjct: 831 KPFINILDQVSEMQSLECHRRVTNRIEELLDRQMLSFAQQMVDETFCRNRLKEL----PR 886
Query: 692 NILVKMLLQ--GYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPK--GRLLIGCFDETG 747
I + L G+ + EP+ ++ + + ++ + +I +P GR ++G DETG
Sbjct: 887 RIDIDYLRTSWGFTLSSEPFFRSLIKASIKFSITRQLRKEQIPIPSELGRSMLGVVDETG 946
Query: 748 ILNYGQVFVRVTMTRE-ELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAV 806
L YGQ+FV+ T +L K+ + ++ G VL+TKNPC+ GDVRV EAV
Sbjct: 947 RLQYGQIFVQYTKNLALKLPPKNAA--------REVLTGTVLLTKNPCIVAGDVRVFEAV 998
Query: 807 YEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGR 866
+L D ++FPQ G RPHP+E +G DLDGD + I WD L+ + E P D+T
Sbjct: 999 DIPELHH--MCDVVVFPQHGPRPHPDEMAGSDLDGDEYSIIWDQQLLLDKNEIPFDFTSE 1056
Query: 867 RSRI----MDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATL 922
+ + D D + E F+V Y+ D++G IS +HL ++D+ +R C+ LA
Sbjct: 1057 KQKTEFKEEDIDALMRE---FYVKYLKLDSVGTISNSHLHNSDQYGLNSRV--CMDLAKK 1111
Query: 923 HSMAVDFAKTGAP--------------AEMPLALKPKEFPDF-MEREDKPRYISFGVLGK 967
+ AVDF K+G P EM + + PD+ M + P Y+S + GK
Sbjct: 1112 NCQAVDFTKSGQPPDELEKKWRRDEETGEMIPPERAERVPDYHMGNDHAPMYVSPRLCGK 1171
Query: 968 LYR--ATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALM 1025
L+R +D +++I ++ E + D + +DG++ ++ A Y ++ ++M
Sbjct: 1172 LFREFKAIDDVLKISEE---RDEQVEITIDETMMIDGYKEYMHSAREDLSRYNAQLRSMM 1228
Query: 1026 NYYGASTEDEILTG---NLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWF----- 1077
YG TE E+ +G ++RNR S +D+ + + I NL + +E F
Sbjct: 1229 ENYGIKTEGEVFSGCIVDMRNRISDKDQDDMSFYNTNQMIETKVTNLFKKYREHFFEEFE 1288
Query: 1078 -------------GS-------SCK--ENEHPQLASAWYHVTYSPSYCKERMALLSFPWI 1115
GS C+ N + A AWY Y + LSF W+
Sbjct: 1289 GGWQANTEVTSRHGSETNILQRQCRAPSNRMMRKAVAWYRACYEEARITRENKKLSFAWL 1348
Query: 1116 VGDILLNIKSVNS 1128
+ D+L +K + S
Sbjct: 1349 MFDVLGMVKQIRS 1361
>gi|310795671|gb|EFQ31132.1| RNA dependent RNA polymerase [Glomerella graminicola M1.001]
Length = 1313
Score = 268 bits (685), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 223/748 (29%), Positives = 354/748 (47%), Gaps = 107/748 (14%)
Query: 383 DHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALS 442
+H+V ++A+VTP +I GPE E N V++ F + S FMRVTF +ED L N
Sbjct: 437 NHHV-QVFKAMVTPTRITLHGPEPEPLNRVLRRFPDHTSYFMRVTFCDEDGGDLFFNPRV 495
Query: 443 TSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVS 502
+ Q I+ R +L GI I + Y+FL FS S LR++S W A + +
Sbjct: 496 SYDQ-----------IFDRYRKVLNGGIPIAGRVYQFLGFSHSSLRSHSAWFSAPFVDST 544
Query: 503 AE-----DVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEM--IPDVEVTSD 555
+ ++ +G F+ I+ +KCAAR+GQ FS + + + + IPDV+
Sbjct: 545 GKLQLYANIIKSLGDFDHIQIPAKCAARIGQAFSETPAFINLSEHRIRHWDIPDVKSHDG 604
Query: 556 GNTYCFSDGIGKISLSFARQVAQKCG-LSHTPSAFQIRYGGYKGVIAVD-RNSFRKLSLR 613
FSDG+G IS V + S P+ QIR+GG KG+++++ R S R + +R
Sbjct: 605 KIQRVFSDGVGTISQEAIELVWPRLPQRSLIPTCLQIRWGGVKGMLSLESRLSGRSICIR 664
Query: 614 R-SMLKFESRN-RMLNV-TKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGK 670
R SM KF S + + L + S+ + LNR++I ++ LGV F +Q+ +L L
Sbjct: 665 RESMEKFPSTDVQNLEICDAASKPLKLVLNRQMIKIMEDLGVDKNFFLRLQKNELDRLRA 724
Query: 671 MLINREAALDVLQKLNGVDSKNIL---VKMLLQ-GYEPNVEPYLSMMLLSHHENQLSDLK 726
+ + L L GV S L +K L + G + + +L ++ S +L LK
Sbjct: 725 VTADAYNTGTFLH-LQGVGSAFFLPTFIKSLEKYGIDYRRDDFLRAVVESTVLRELRLLK 783
Query: 727 SRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGK 786
+ RI VP+G L G DETG L G+V+V + +S ++ R S+ G+
Sbjct: 784 HKARIPVPQGATLFGVMDETGFLKEGEVYV----CYDTYKSPGKAPTER-----SLRDGR 834
Query: 787 VLVTKNPCLHPGDVRVLEAVYEMKLEE-KDYVDCIIFPQKGERPHPNECSGGDLDGDIFF 845
VLVT++P LHPGD+++ ++ +C+ F Q G+R P++ SGGDLDGD++
Sbjct: 835 VLVTRSPALHPGDIQLANMRTPPPGHPLRNLRNCVAFSQHGQRDLPSQLSGGDLDGDLYN 894
Query: 846 ISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHAD 905
I WD +P DY + VT +++ +FVD+M +D LG I+T HL+ +D
Sbjct: 895 IIWDKQAMPRWICKAADYPRVTPEPLGRPVTRDDMANWFVDFMKSDVLGLIATRHLILSD 954
Query: 906 RDPDKARSSKCLHLATLHSMAVDFAKTGAPAEM-PLALKPKEFPDFM------------- 951
+D + CL LA LHS AVDF+KTG E + P+ PDF+
Sbjct: 955 QDQEGTMGRNCLKLAELHSTAVDFSKTGIAVEQREIPKAPRFRPDFLAPAPPAQLYDRTH 1014
Query: 952 ----------------EREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYD 995
+ + Y S +LG+LYR + IW + I
Sbjct: 1015 IDFIDEDEAVDDDEDAQGPNHKYYKSENILGQLYR-------NVNEKQIWDQDINRVVSK 1067
Query: 996 HDLEVDGFEAFLGV---------------------AESHKEMYEEEMNALM-----NYYG 1029
V ++ FLG+ A+S ++++E+ ++ M N+
Sbjct: 1068 AGPSV--WDQFLGLMERKIGEYGKGRIRWETKREQAQSLRDVFEDTVSGFMVQYSDNHMK 1125
Query: 1030 ASTEDEILTGNLRNRA---SYLQRDNRR 1054
TE E+ G++ N+ + Q+DN +
Sbjct: 1126 QLTEVEVFCGSIFNKTGSQTRRQKDNSK 1153
>gi|169625035|ref|XP_001805922.1| hypothetical protein SNOG_15784 [Phaeosphaeria nodorum SN15]
gi|160705585|gb|EAT76879.2| hypothetical protein SNOG_15784 [Phaeosphaeria nodorum SN15]
Length = 1234
Score = 267 bits (683), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 199/610 (32%), Positives = 308/610 (50%), Gaps = 63/610 (10%)
Query: 375 LSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWS 434
++S+KR +V+ ++A +TP I+ GP+ +TSN +++ +++Y FMRV+F +ED
Sbjct: 420 VASNKRGQQDHVVLTHKATITPTGIFLRGPDADTSNRILRKYSQYTDYFMRVSFTDEDGV 479
Query: 435 KLPANALSTSIQRGIFSKPYRTK--IYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSV 492
+F P ++ +Y R IL++GI + +H+EFL FS + LR + V
Sbjct: 480 -------------SVFHDPKASQHEVYERFRKILREGIHVAGRHFEFLGFSHASLRCHQV 526
Query: 493 WMFAS----NDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIP 548
W AS + A DV +G FN ++CAAR+GQ FS + + +P +
Sbjct: 527 WFMASFIFKGLPICARDVIQNLGDFNGFTCSARCAARIGQAFSDTIFAVQIPSTATILET 586
Query: 549 DVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHT---PSAFQIRYGGYKGVIAVDRN 605
++T N FSDG G +SL + + +K P+ QIR G KGV+++D +
Sbjct: 587 KEDITR--NNRVFSDGCGTMSLELFQLLWRKLNPQQRRKRPTVLQIRCRGAKGVLSLDSS 644
Query: 606 SF-RKLSLRRSMLKF--ESRNRMLNVTKWS-ESMPCFLNREIISLLSTLGVKDEVFEAMQ 661
+L +R+SM KF S R L + + + +LN + I +L LGV + F +Q
Sbjct: 645 LVGEELHIRKSMTKFIAGSEWRDLEICSAAYRPLRVYLNHQFIKILEDLGVPPQNFIKVQ 704
Query: 662 ---QQQLILLGKMLINREAALDVLQK---------LNGVDSKNI---LVKMLLQGYEPNV 706
++QL L+ K +N A D L+K + D I M G
Sbjct: 705 NEARKQLELIVKHPLN---AADFLRKHKTNIRTGYSHSADHAKIPRLFELMHYAGLSFQT 761
Query: 707 EPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELE 766
+ +L ++ + + DLK R RI V G LL G DET L G+V+V T +E
Sbjct: 762 DQFLCEIVEVAAMSSIRDLKYRARIPVESGHLLYGIMDETNTLKEGEVYV---ATEDETP 818
Query: 767 SKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEE-KDYVDCIIFPQK 825
S + +K ++ +V+VT+ P LHPGDV+++ AV + +CI+F Q+
Sbjct: 819 SGRR-------EKNILIGDRVVVTRAPALHPGDVQLVSAVNVPDGSPLRSLHNCIVFSQQ 871
Query: 826 GERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFV 885
G R P++ SGGDLDGD+F + WD LIP T P DY + V + +I FF+
Sbjct: 872 GARDLPSQLSGGDLDGDLFHVIWDPLLIPKYTVPAADYAAAAPFNLGRPVEVNDIVDFFI 931
Query: 886 DYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPK 945
+M ND LG IS H + AD+ + S C+ LA L S AVDF+K+G PA+ + P+
Sbjct: 932 GFMQNDKLGQISNMHKIRADKRENGTFDSDCILLAKLASDAVDFSKSGVPAKT--SDIPR 989
Query: 946 EF----PDFM 951
+ PDFM
Sbjct: 990 DIDIIRPDFM 999
>gi|346977552|gb|EGY21004.1| RNA-dependent RNA polymerase [Verticillium dahliae VdLs.17]
Length = 1444
Score = 267 bits (683), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 223/786 (28%), Positives = 354/786 (45%), Gaps = 165/786 (20%)
Query: 381 LIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANA 440
++ H + +VTP IY P +E SN V++ + + F+RV F +E
Sbjct: 482 VVPHYCAIVRKVVVTPTTIYLSSPGVEASNRVIRKYQHVSDRFLRVQFTDE--------- 532
Query: 441 LSTSIQRGIFSKPYRTK----IYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFA 496
+ RG S + + ++ R+ + +GI IGD+HY+FLAF SQ+R + F
Sbjct: 533 ----LTRGRISTRAKMELDHYVFKRVYLTMINGIRIGDRHYKFLAFGNSQIRECGAYFFC 588
Query: 497 SNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDG 556
+ ++R WMG FN I V+K AAR+GQ FS++++ + ++++IPD+E
Sbjct: 589 ETAHLKCTEMRQWMGNFNHIHIVAKFAARLGQCFSTTREIRSIRAPNIQIIPDIER---- 644
Query: 557 NTYCFSDGIGKISLSFARQVAQKCGLS--HTPSAFQIRYGGYKGVIAV-DRNSFRKLSLR 613
N +CF+DG+GKIS A V ++ GL TPSAFQ R GG KGV+AV + +R
Sbjct: 645 NGHCFTDGVGKISSFLASMVLEEMGLETVETPSAFQFRMGGCKGVLAVWPEAKGMYVHIR 704
Query: 614 RSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLI 673
+S KF++ L + + + LNR+ I++L++LG+K EVF
Sbjct: 705 KSQEKFKATFNGLEIIRCARFSVATLNRQTITILTSLGIKSEVF---------------- 748
Query: 674 NREAALDVLQKLNGVDSKNILVKMLLQGYEP--NVEPYLSMMLLSHHENQLSDLKSRCRI 731
+D+LQ+ L GYE N + +++L H + + L R
Sbjct: 749 -----MDLLQRQ-------------LHGYEKAMNDQGAAAVLLGRHIDENHTSLALR--- 787
Query: 732 YVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTK 791
++N+G F+R + + F + + +G +V +
Sbjct: 788 ---------------DLINWG--FMRHDV--------QEPFVLTI---LQLWRGVCIVGR 819
Query: 792 NPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDND 851
NP LHPGDVRV+EAV +L + + ++FP G+ P+ SGGDLDGD FF+ WD +
Sbjct: 820 NPSLHPGDVRVVEAVDVPQL--RHMKNVVVFPSTGDVDVPSMLSGGDLDGDDFFVIWDPN 877
Query: 852 LI-PCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDK 910
LI P PMD + +++D DV +++
Sbjct: 878 LIPPVWNFRPMDNVAPQPKVVDRDVNAKDL------------------------------ 907
Query: 911 ARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFM-EREDKPR-YISFGVLGKL 968
L LA LHS AVD+ K+G PAE+ L+ + +P FM ER +K Y S+ LG++
Sbjct: 908 -----SLQLAKLHSKAVDYVKSGDPAELGRELRARRWPHFMGERRNKNSLYHSYTALGQI 962
Query: 969 YRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYY 1028
Y D + + N ++ +K +D A L A K Y+ M LM
Sbjct: 963 Y----DRVQDVPFNPLYEKKFDRRILSRFAPIDN--AVLKQARRLKSTYDTAMRRLMAQR 1016
Query: 1029 GASTEDEILTGNL--RNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSCKENEH 1086
STE EI TG R R + + G +D LL ++ ++E G S +
Sbjct: 1017 EVSTEFEIWTGFPLSRPRVGNAYKHSEDIG--RDAGLLK-QSFRDEVHALVGGSGYDKVA 1073
Query: 1087 PQLASAW-----------------YHVTYSPSYCKER------MALLSFPWIVGDILLNI 1123
P +A+ + + V P R M L++FPWI +L I
Sbjct: 1074 PFVAAMYQVTAEEVSIALHRRREAHSVAGDPEALPGRKRDMKGMPLITFPWIYHWVLGRI 1133
Query: 1124 KSVNSR 1129
+ +++
Sbjct: 1134 ATDDAK 1139
>gi|238508311|ref|XP_002385352.1| RNA-dependent RNA polymerase, putative [Aspergillus flavus
NRRL3357]
gi|220688871|gb|EED45223.1| RNA-dependent RNA polymerase, putative [Aspergillus flavus
NRRL3357]
Length = 1107
Score = 267 bits (683), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 193/590 (32%), Positives = 300/590 (50%), Gaps = 56/590 (9%)
Query: 385 NVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTS 444
N+ +R VTP +I GPE+E N +++ F + F+RV F +E+ L NA
Sbjct: 393 NMTKVHRVNVTPTRITLHGPEMEPQNRILRKFPNHHEYFIRVQFCDENGEGLLFNA---- 448
Query: 445 IQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFAS---NDEV 501
+ Y+ I+ R + I+ GI I + Y FL FS S LR+ +VW F+S +D
Sbjct: 449 ------NVDYK-DIFGRFIDIMTRGIQIAGRTYNFLGFSHSSLRSRAVW-FSSPFVDDNG 500
Query: 502 SAE---DVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQD----VEMIPDVEVTS 554
+ + +G F+ I S ++CAAR+GQ F+ + +VP++ V IPD+ TS
Sbjct: 501 HMQTYFSIVSAIGKFSHITSPARCAARIGQAFTETP--FMVPLEKHGVLVSTIPDL--TS 556
Query: 555 DGNTYCFSDGIGKISLSFARQVAQKCGLSH-TPSAFQIRYGGYKGVIAVD-RNSFRKLSL 612
+ FSDG+G IS + L P+ FQIR G KG++A D R + +
Sbjct: 557 PDGSRVFSDGVGAISREVVASIWADIPLKRGNPTCFQIRLGRAKGMLAADSRLRTAVIQI 616
Query: 613 RRSMLKFESRNRMLNV---TKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLG 669
R SM+KF+S + M N+ S P LNR++I +L +G + F MQ ++L L
Sbjct: 617 RPSMIKFDSED-MKNLEICNMASRPYPMVLNRQVIKILEDMGASKDWFFQMQNEELTRLQ 675
Query: 670 KMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNV----EPYLSMMLLSHHENQLSDL 725
+ ++ + L+ + + L ++ Q Y + + +L ++ + +L L
Sbjct: 676 SITVSTDKTARFLKDKSVAECIG-LYRLYRQCYWTRLNYKKDGFLRAIVEAVVLRELRLL 734
Query: 726 KSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKG 785
K + RI V KG L G DETG L G+V+V F R++ + + G
Sbjct: 735 KHKARIPVKKGMTLYGVIDETGFLQEGEVYVT---------------FDRMEGRYAAPPG 779
Query: 786 --KVLVTKNPCLHPGDVRVLEAVYEMKLEEKDY-VDCIIFPQKGERPHPNECSGGDLDGD 842
+LVT++P LH GD++ + V + Y +CI+F QKG R P++ SGGDLDGD
Sbjct: 780 PGHILVTRSPALHCGDIQRAQNVIPPEDHPLRYHRNCIVFSQKGSRDLPSKLSGGDLDGD 839
Query: 843 IFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLV 902
++ + WD +L ET P DY S + DV ++++ FFV++M +D LG I+ H+V
Sbjct: 840 LYHVIWDPELESVETFAPADYPRPTSIDIGRDVRVDDMAAFFVEFMRSDILGMIAIRHMV 899
Query: 903 HADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEF-PDFM 951
AD+ R + C LA LHS AVDF+KTG P M + + PDF+
Sbjct: 900 MADQAASGTRDTSCRLLAGLHSKAVDFSKTGIPVNMEDMPRVNRYRPDFL 949
>gi|406862357|gb|EKD15408.1| RNA-dependent RNA polymerase [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 1193
Score = 267 bits (683), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 195/590 (33%), Positives = 299/590 (50%), Gaps = 55/590 (9%)
Query: 390 YRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGI 449
+R +TP Y GPE E N V++ + K+ F+RV+F +ED + N
Sbjct: 419 HRVTITPSGFYLGGPEYEPMNRVLRQYPKHHDSFIRVSFADEDGEPIRFNP--------- 469
Query: 450 FSKPYRTKIYS-RILTILQDGIVIGDKHYEFLAFSASQLRNNSVWM---FASNDEVSAED 505
K KI+ R T L G + + ++FL FS S LR S W FA N + +
Sbjct: 470 --KVSNEKIFQDRFGTFLSTGFHVAGRKFDFLGFSHSSLRAQSCWFMSPFAHNGSLMYDR 527
Query: 506 VR-GWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQD--VEMIPDVEVTSDGNTYCFS 562
V +G F KIR +KCAAR+GQ FS + + VP++ V+++PDVE S FS
Sbjct: 528 VLIQQLGDFTKIRCPAKCAARIGQAFSET--PIAVPLEPGLVQLLPDVERGSR----VFS 581
Query: 563 DGIGKISLSFARQVAQKCG--LSHTPSAFQIRYGGYKGVIAVDRN-SFRKLSLRRSMLKF 619
DG GKIS S ++ H P+ FQIRY G KG++++D ++ +R SM+KF
Sbjct: 582 DGCGKISRSIMHRIWAVLPDMRKHQPTCFQIRYQGAKGMLSLDDTLEGDQVLMRPSMIKF 641
Query: 620 ESRNRM-LNVTKWS-ESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREA 677
+ L + S +S+P +LNR++I ++ +GV D+ F +Q Q++ L K +
Sbjct: 642 DGSPSFDLELCNASYKSLPMYLNRQLIKIMEDIGVPDQWFLDLQSQEIERLRKATTSASN 701
Query: 678 ALDVLQKLNGVDSKNI--LVKMLLQ-GYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVP 734
A L + D ++ L++ L Q E + +L +L ++ LK R R VP
Sbjct: 702 AAKFLSSHSIGDRVHLSWLIRKLAQMSIEFRTDRFLCDVLELSVMLEVKTLKHRARYPVP 761
Query: 735 KGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPC 794
+G L G DETGIL G+++ ++ + + +++ +VLVT++P
Sbjct: 762 EGLTLYGIMDETGILEEGEIYC--------------TYQSQKGKRMVVIQDRVLVTRSPA 807
Query: 795 LHPGDVRVLEAVYEMKLEEKDYV-DCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI 853
LHPGDV+ ++AV + + +CI F QKG+R P+ SGGDLDGD++ I WD
Sbjct: 808 LHPGDVQPVKAVNVPRDSPLSKLRNCICFSQKGDRDLPSMLSGGDLDGDLYNIIWDPGCQ 867
Query: 854 PCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARS 913
P DY + + V+ E++ KFFV +M D LG I+ +H + AD+
Sbjct: 868 IRFKSFPADYPRQDPIDIGRQVSREDMTKFFVQFMETDQLGRIAMSHQILADQKDMGTFD 927
Query: 914 SKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFG 963
C LA +HS AVDF+KTG P +M K+ P F +P ++S G
Sbjct: 928 EDCRILAEMHSTAVDFSKTGVPVDM------KKMPKFT--PIRPDFMSMG 969
>gi|380493792|emb|CCF33621.1| RNA dependent RNA polymerase, partial [Colletotrichum higginsianum]
Length = 1278
Score = 266 bits (681), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 220/743 (29%), Positives = 346/743 (46%), Gaps = 96/743 (12%)
Query: 383 DHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALS 442
+H+ + ++A+VTP +I GPE E N +++ F S F+RVTF +ED L N
Sbjct: 438 NHHAL-VFKAMVTPTRITLHGPEPEPMNRILRRFPNQTSYFIRVTFCDEDGGDLFFNPRV 496
Query: 443 TSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVS 502
+ Q I+ R +L GI I + Y+FL FS S LR++S W A +
Sbjct: 497 SYDQ-----------IFDRYREVLNGGIPIAGRIYQFLGFSHSSLRSHSAWFSAPFVDDG 545
Query: 503 AE-----DVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEM--IPDVEVTSD 555
+ ++ +G F I +KCAAR+GQ FS + + + + IPDV+
Sbjct: 546 GKLQLYGNIIKALGDFEHIEIPAKCAARIGQAFSETPTFIKLAENRIRHSNIPDVKSQDG 605
Query: 556 GNTYCFSDGIGKISLSFARQVAQKCGL-SHTPSAFQIRYGGYKGVIAVD-RNSFRKLSLR 613
FSDG+G IS V + S P+ QIR+GG KG++++D R R + +R
Sbjct: 606 DIERVFSDGVGTISQDVLELVWPRLPRGSLIPTCLQIRWGGVKGMLSLDSRLMGRTICVR 665
Query: 614 R-SMLKFESRNRMLNVT---KWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLG 669
R SM KF S N + N+ S + LNR++I ++ LGV +F +Q++++ L
Sbjct: 666 RESMEKFPS-NDVENLEICDAASRPLKLVLNRQMIKIMEDLGVDSNLFLQLQKKEVDRLR 724
Query: 670 KMLINREAALDVLQKLNGVDSKNILVKMLLQ----GYEPNVEPYLSMMLLSHHENQLSDL 725
+ + L L GV S L ++ G + + +L ++ S +L L
Sbjct: 725 AVTADAYNTGTFLH-LQGVGSTFFLPSLIKSLKNYGIDYRRDSFLRAVVESTVLQELRLL 783
Query: 726 KSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKG 785
K + RI VP+G L G DETG L G+V+V + +S K S+ G
Sbjct: 784 KHKARIPVPEGATLFGIMDETGFLREGEVYVCYDTYKRPGKSPM---------KNSLRDG 834
Query: 786 KVLVTKNPCLHPGDVRVLEAVYEMKLEE-KDYVDCIIFPQKGERPHPNECSGGDLDGDIF 844
VLVT++P LHPGD++ + ++ +CI F Q+G R P+ SGGDLDGD++
Sbjct: 835 PVLVTRSPALHPGDIQYVNMRTPPPGHPLRNLRNCIAFSQRGHRDLPSMLSGGDLDGDLY 894
Query: 845 FISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHA 904
I WD P T DY + V +++ +FVD+M +D LG I+T HL+ +
Sbjct: 895 NIIWDKAAAPKRTFKAADYPRVTPEPLGRPVERKDMANWFVDFMKSDVLGLIATRHLILS 954
Query: 905 DRDPDKARSSKCLHLATLHSMAVDFAKTGA---PAEMPLALKPKEFPDFME--------- 952
D+DP CL LA LHS AVDF+KTG P ++P A P+ PDF+
Sbjct: 955 DQDPVGTLGQDCLKLAGLHSTAVDFSKTGVAVEPRDIPKA--PQFRPDFLAPAPPAQLYD 1012
Query: 953 ---------------------REDKPRYISFGVLGKLYRAT---------LDSIMQIRSN 982
+ Y S +LG LYR + ++
Sbjct: 1013 RTQINFLGRDEGVDDDDEDAAGPNHKYYRSEKILGVLYRNVDEKQIWDEDISRVVSKTGP 1072
Query: 983 AIWSEKIA---EASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGAS-----TED 1034
++W++ + ++ + +E L A+S + +YE+ + M Y S TE
Sbjct: 1073 SVWAQFVGLMQRKIKEYSAGLIRWETRLEEAKSLRNVYEDTVGGFMTQYSDSHMKQLTEV 1132
Query: 1035 EILTGNLRNRA---SYLQRDNRR 1054
E+ G++ N++ + Q+DN +
Sbjct: 1133 EVFCGSIFNKSGSQTRRQKDNSK 1155
>gi|189200837|ref|XP_001936755.1| RNA-dependent RNA polymerase [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187983854|gb|EDU49342.1| RNA-dependent RNA polymerase [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 953
Score = 266 bits (681), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 191/590 (32%), Positives = 304/590 (51%), Gaps = 51/590 (8%)
Query: 384 HNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALST 443
H++ Y+A VTP I GP+ + SN +++ + FMRV F +ED LS
Sbjct: 130 HHLALTYKATVTPTGILLRGPDWDVSNRILRKYGTRTEYFMRVFFADED-------GLS- 181
Query: 444 SIQRGIFSKPYRTK--IYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFA----S 497
+F P ++ +Y R ++LQ GI + + Y+FL FS + LR++ W A +
Sbjct: 182 -----VFHDPRASQGNVYERFRSVLQHGIFVAGRTYQFLGFSHASLRSHQAWFMAPFEMN 236
Query: 498 NDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGN 557
A D+ +G F+ I ++C+AR+GQ FS + VPV + + + N
Sbjct: 237 GTMFRARDIISDLGDFSHIHCSARCSARIGQAFSDT--IFSVPVPSTAYVTETKADIARN 294
Query: 558 TYCFSDGIGKISLSFARQVAQKCG---LSHTPSAFQIRYGGYKGVIAVDRNSF-RKLSLR 613
FSDG G ISL R+V + P+ QIR+ G KGV+++D + +L +R
Sbjct: 295 GRTFSDGCGTISLEILRKVWNTLPPERKAQRPTILQIRFRGAKGVLSLDESLVGEQLHIR 354
Query: 614 RSMLKFESRN--RMLNVTKWS-ESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGK 670
+SM K+ ++ R L + + + + FLN + I +L LGV F+A+Q + + L K
Sbjct: 355 QSMTKYIAKETWRDLELCGAAYKPLQVFLNHQFIKILEDLGVPARNFKAVQDEAVNAL-K 413
Query: 671 MLINR--EAALDVLQKLNGVDSK-NILVKMLLQ-GYEPNVEPYLSMMLLSHHENQLSDLK 726
M+ AA + +GV +K L +++ Q G + + +L+ ++ L LK
Sbjct: 414 MITEHPLNAASFLEYSHSGVYAKVPRLFELMHQIGLSFHADRFLTDIVEVAAMTNLRSLK 473
Query: 727 SRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGK 786
R RI + +G LL G DET L GQV++ + D+S R + +V +
Sbjct: 474 YRARIPIEQGHLLYGIMDETNFLQEGQVYIAT-------QDYDKSGKLR---RRILVGER 523
Query: 787 VLVTKNPCLHPGDVRVLEAVYEMKLEE-KDYVDCIIFPQKGERPHPNECSGGDLDGDIFF 845
+++T+ P LHPGDV+++ AV + + +C++F Q+G R P++ SGGDLDGD+F
Sbjct: 524 IVITRAPALHPGDVQLVTAVDVPEHSSLRALHNCVVFSQRGARDLPSQLSGGDLDGDLFH 583
Query: 846 ISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHAD 905
I +D LIP T PP DY ++ + V + +I FF++YM D LG IS H + AD
Sbjct: 584 IIYDQRLIPDFTMPPADYKSNGAKDLGRPVEVNDIVDFFIEYMNMDRLGQISNKHKIRAD 643
Query: 906 RDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEF----PDFM 951
+ +CL LA L S AVDF+K+G A+ ++ P+ F PDFM
Sbjct: 644 KS-TGTNDPECLLLAQLASDAVDFSKSGISAD--ISKIPRGFDHIRPDFM 690
>gi|85110327|ref|XP_963405.1| hypothetical protein NCU08435 [Neurospora crassa OR74A]
gi|28881256|emb|CAD70515.1| related to RNA-directed RNA polymerase [Neurospora crassa]
gi|28925084|gb|EAA34169.1| predicted protein [Neurospora crassa OR74A]
Length = 1351
Score = 266 bits (681), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 189/588 (32%), Positives = 302/588 (51%), Gaps = 48/588 (8%)
Query: 382 IDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANAL 441
I + YRALVTP +I GPELE N +++ F ++ F+RV F EED L N+
Sbjct: 407 IPPGLTKIYRALVTPTRIELHGPELEAKNRILRKFPEHQDHFLRVQFAEEDGQDLFFNSA 466
Query: 442 STSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWM---FASN 498
+ IY R +L +GI +G + Y FL FS S LR +S+W+ F +
Sbjct: 467 VSM-----------DAIYQRFKDVLTNGISVGGRVYRFLGFSHSSLRAHSLWLAAPFIYD 515
Query: 499 DEVS-AEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGN 557
++ A ++ +G F I S ++ AAR+GQ FS + ++ + +++I +V N
Sbjct: 516 GKLQLASNIIEDLGDFRNIMSPARRAARIGQAFSETPYSVSLYDHGIDVIRQRDVKR--N 573
Query: 558 TYCFSDGIGKISLS----FARQVAQKCGLSHTPSAFQIRYGGYKGVIAVD-RNSFRKLSL 612
FSDG+G IS R++ + G P+ Q+R+ G KG++A+D R + R++ +
Sbjct: 574 ERVFSDGVGIISQGALEVIHREIPESKGY---PNCLQVRWAGAKGMLALDARLTGRQICI 630
Query: 613 RRSMLKFESRNR-MLNVTKW-SESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGK 670
R SM KF SR+ L + S+ +P LNR++I +L + + F +Q+++L L
Sbjct: 631 RDSMEKFRSRDEEHLEICDMASKPIPLMLNRQMIKILEDMRAPAQWFLELQEKELQRLRA 690
Query: 671 MLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVE----PYLSMMLLSHHENQLSDLK 726
+ N + L KL V L + L + N++ +L ++ + +L LK
Sbjct: 691 ITDNVQNVATFL-KLQCVGDSVHLSQFLKDLDKMNIDYRRDQFLRGIVEAVVLRELRLLK 749
Query: 727 SRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGK 786
+ RI VP G L G DETG+L G+V+V E+ D F K G
Sbjct: 750 HKARIPVPYGVTLFGVMDETGLLREGEVYV-------TFETVDGRF------KDPPTAGP 796
Query: 787 VLVTKNPCLHPGDVRVLE-AVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFF 845
V+VT++P LHPGD+++ A+ ++ +CI+F Q GER P++ SGGDLDGD F
Sbjct: 797 VVVTRSPALHPGDIQIAHNAIPPAGHPLRELKNCIVFSQNGERDLPSQLSGGDLDGDTFN 856
Query: 846 ISWDNDLIPC-ETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHA 904
+ WD ++ T DY ++ +V +++ FFV++M D LG I+ H++ A
Sbjct: 857 VIWDQSIVATLRTFAAADYPRVEPLKLNREVESKDMADFFVEFMKADHLGVIAVRHMILA 916
Query: 905 DRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEF-PDFM 951
D + + CL LA LHS AVDF+K+G ++ +P + PDF+
Sbjct: 917 DERNEGTLDADCLKLAALHSKAVDFSKSGIHVDITELPRPPMYRPDFL 964
>gi|302660624|ref|XP_003021989.1| hypothetical protein TRV_03883 [Trichophyton verrucosum HKI 0517]
gi|291185913|gb|EFE41371.1| hypothetical protein TRV_03883 [Trichophyton verrucosum HKI 0517]
Length = 1233
Score = 266 bits (681), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 210/687 (30%), Positives = 330/687 (48%), Gaps = 58/687 (8%)
Query: 300 LSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPV--- 356
+ V FQL LV N ++SL A L + ++ +V Q L ++ P
Sbjct: 319 FDYRVKFQLLKLVWNGELSLDQASLLLPTVHRLHQQHSSDIVAQALMRIDGNSVYPSPGV 378
Query: 357 ----SFVKTQLHVLGRNCKSIPLSSHK---RLIDHNVMSCYRALVTPMKIYCLGPELETS 409
+ ++ L ++ +I + + L+ + +RA VTP IY GP ET
Sbjct: 379 LASDASIEALTETLEKSLDTILKARTEWDINLMHEKNVLVHRATVTPAGIYLSGPYAETK 438
Query: 410 NYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDG 469
N +++ + F+RV F++E + + + Q IF + R +++ G
Sbjct: 439 NRILRKYLDNIDYFIRVEFLDETGDPVFFDPSANLEQ--IF--------HQRFAGVMKRG 488
Query: 470 IVIGDKHYEFLAFSASQLRNNSVWMFA-----SNDEVSAEDVRGWMGCFNKIRSVSKCAA 524
I I + +EFL FS S LR + W A + D ++A + G +G F+ IRS SK AA
Sbjct: 489 IEIAGREFEFLGFSHSSLRAQTCWFAAPFTTANGDYLNARTIIGNIGYFDHIRSPSKQAA 548
Query: 525 RMGQLFSSSKQTLVVPVQDVEM-IPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLS 583
R+GQ FS + ++ V + V M PDV+ N FSDG+G IS ++ + L
Sbjct: 549 RIGQAFSDTLTSISVSKEVVWMRAPDVK----RNDRIFSDGVGVISRDLMYRIWNEYALR 604
Query: 584 HT--PSAFQIRYGGYKGVIAVD-RNSFRKLSLRRSMLKFESRNRMLNVT---KWSESMPC 637
P+ FQIR G KG++++D R L LR SM+KF + + + N+ ++P
Sbjct: 605 EKVKPTVFQIRIAGAKGMVSLDTRRKGEFLMLRESMVKFPTDD-LYNIEICGAGIRALPF 663
Query: 638 FLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKM 697
+LN +II +L L V E F +QQ ++ L + E A L+ S +
Sbjct: 664 YLNNQIIKILEDLEVPFEAFHQLQQDEINFLYSTFNSTERAAKFLEDSPVPKSLRLPWLF 723
Query: 698 LLQ---GYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQV 754
L+ G +P+L ++ +L DLK R RI VP L G DETG L ++
Sbjct: 724 LVLKGLGIRYTQDPFLKRVMELTTLLRLRDLKYRARIRVPNAVTLYGIMDETGYLKENEI 783
Query: 755 FVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAV-YEMKLEE 813
+ ++ + +V+ V++T++P LHPGD++V+ AV
Sbjct: 784 YC--------------AYLGGDGRREILVRDNVVITRSPALHPGDIQVVNAVDVPANSPL 829
Query: 814 KDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDH 873
+ +C+ F Q G+R P+ SGGDLDGD++ I +D L+P +T PP DY ++ +D
Sbjct: 830 RKLHNCVAFSQHGDRDLPSMLSGGDLDGDLYNIIYDTRLVPRKTIPPADYPRVEAKELDR 889
Query: 874 DVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTG 933
V E+I FFV +M D LG I+T H AD+ CL LA LHS+AVD++K+G
Sbjct: 890 KVETEDIIDFFVTFMQQDQLGRIATTHQTIADQSEFGTLDQACLKLAHLHSVAVDYSKSG 949
Query: 934 APAEM-PLALKPKEFPDFMEREDKPRY 959
P + + P+ PDFM PR+
Sbjct: 950 IPVNVFSIPRAPRVRPDFM--APSPRF 974
>gi|302510543|ref|XP_003017223.1| hypothetical protein ARB_04100 [Arthroderma benhamiae CBS 112371]
gi|291180794|gb|EFE36578.1| hypothetical protein ARB_04100 [Arthroderma benhamiae CBS 112371]
Length = 1233
Score = 266 bits (680), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 221/725 (30%), Positives = 340/725 (46%), Gaps = 101/725 (13%)
Query: 383 DHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALS 442
+ NV+ +RA VTP IY GP ET N +++ + F+RV F++E + + +
Sbjct: 413 EKNVL-VHRATVTPAGIYLSGPYAETKNRILRKYLDNIDYFIRVEFLDETGDPVFFDPSA 471
Query: 443 TSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFA-----S 497
Q IF + R +++ GI I + +EFL FS S LR + W A +
Sbjct: 472 NLEQ--IF--------HQRFAGVMKRGIEIAGREFEFLGFSHSSLRAQTCWFAAPFTTAN 521
Query: 498 NDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEM-IPDVEVTSDG 556
D ++A + G +G F+ IRS SK AAR+GQ FS + ++ V + V M PDV+
Sbjct: 522 GDYLNARTIIGNIGYFDHIRSPSKQAARIGQAFSDTLTSISVSKEVVWMRAPDVK----R 577
Query: 557 NTYCFSDGIGKISLSFARQVAQKCGLSH--TPSAFQIRYGGYKGVIAVD-RNSFRKLSLR 613
N FSDG+G IS ++ + L P+ FQIR G KG++++D R L LR
Sbjct: 578 NDRIFSDGVGVISCDLMHRIWNEYALRERVKPTVFQIRIAGAKGMVSLDTRRKGEFLMLR 637
Query: 614 RSMLKFESRNRMLNVT---KWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGK 670
SM+KF + + + N+ ++P +LN +II +L LGV E F +Q+ ++ L
Sbjct: 638 ESMVKFPTDD-LYNIEICGAGIRALPFYLNNQIIKILEDLGVPFEAFHQLQRDEINFLYS 696
Query: 671 MLINREAALDVLQKLNGVDSKNILVKMLLQ---GYEPNVEPYLSMMLLSHHENQLSDLKS 727
+ E A L+ S + L+ G +P+L ++ +L DLK
Sbjct: 697 TFSSTERAAKFLEDSPVPRSLRLPWLFLVLKGLGIRYTQDPFLKRVMELTTLLRLRDLKY 756
Query: 728 RCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKV 787
R RI VP L G DETG L +++ + + +V+ V
Sbjct: 757 RARIRVPNAVTLYGIMDETGYLKENEIYC--------------VYLGENGRREILVRDNV 802
Query: 788 LVTKNPCLHPGDVRVLEAV-YEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFI 846
++T++P LHPGD++V+ AV + +C+ F Q G+R P+ SGGDLDGD++ I
Sbjct: 803 VITRSPALHPGDIQVVNAVDVPANSPLRKLHNCVAFSQHGDRDLPSMLSGGDLDGDLYNI 862
Query: 847 SWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADR 906
+D L+P +T PP DY ++ +D V E+I FFV +M D LG I+T H AD+
Sbjct: 863 IYDTRLVPRKTIPPADYPRVEAKELDRKVETEDIIDFFVTFMQQDQLGRIATTHQTIADQ 922
Query: 907 DPDKARSSKCLHLATLHSMAVDFAKTG-APAEMPLALKPKEFPDFMEREDKPR------- 958
CL LA LHS+AVD++K+G A + + P+ PDFM + R
Sbjct: 923 SEFGTLDQACLKLAHLHSVAVDYSKSGIAVNVLSIPRAPRVRPDFMAPSPRFRVADSIES 982
Query: 959 ---------------------------YISFGVLGKLYRATLDS--IMQIRSNAI----W 985
Y S VLG+LYR+ + + Q+R
Sbjct: 983 IIGEKKSTMQDDDDDDEDDSDHRKIRYYKSNNVLGRLYRSIDERSFLCQLRDAGAVDINT 1042
Query: 986 SEKIAEASYDHDL-EVDGF--EAFLGVAESHKEMYEEEM-----NALMNYYGA------S 1031
+ + + +++ L EVDGF G+ K+MYE + M+ Y A S
Sbjct: 1043 NTNVLRSIWNYVLSEVDGFLWTHLTGIFHDIKDMYEPPFISFSRDMFMDIYQADALGIIS 1102
Query: 1032 TEDEI 1036
EDE+
Sbjct: 1103 YEDEL 1107
>gi|156045453|ref|XP_001589282.1| hypothetical protein SS1G_09915 [Sclerotinia sclerotiorum 1980]
gi|154694310|gb|EDN94048.1| hypothetical protein SS1G_09915 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1184
Score = 266 bits (679), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 213/714 (29%), Positives = 338/714 (47%), Gaps = 93/714 (13%)
Query: 384 HNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKL--PANAL 441
N +R +TP Y GPE E++N +++ +A +F+RV F +ED ++ +N
Sbjct: 415 QNTALVHRVTITPAGFYLEGPEAESNNRILRKYAGSHGNFVRVNFCDEDGGRIQYASNVA 474
Query: 442 STSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFAS--ND 499
+ I G+F IL++G I + YE+L S S LR S W A N
Sbjct: 475 NDEIFDGVFK------------NILKNGFSIASQKYEYLGSSHSSLRTQSCWFVAPFFNK 522
Query: 500 EV--SAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDV--EMIPDVEVTSD 555
E A+ + +G F IRS +KCAAR+GQ FS + + + + V E IPDVE
Sbjct: 523 EGYHDAQHIIHDLGNFTAIRSPAKCAARIGQAFSDTPNAITLDKRTVTIERIPDVE---- 578
Query: 556 GNTYCFSDGIGKISLSFARQVAQKCGLSH--TPSAFQIRYGGYKGVIAVD-RNSFRKLSL 612
N FSDG+G +S S ++ +K P+ FQIRY G KG+I++D R L L
Sbjct: 579 RNGRVFSDGVGTMSESLMHKIWEKLPNKKFVKPTCFQIRYQGAKGMISLDTRLPGDHLRL 638
Query: 613 RRSMLKFESR--NRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGK 670
R SM+KF+ N + + + +LNR+ I +L LGV+ E F +Q++++ L
Sbjct: 639 RESMIKFDGSISNDLEICGGAYKPLSMYLNRQFIKILEDLGVEPEYFMKLQEKEVTRLRA 698
Query: 671 MLINREAALDVLQKLNGVDSKNILVKMLLQ-----GYEPNVEPYLSMMLLSHHENQLSDL 725
+ N A L++ D +L+ L++ + + +L +L +L L
Sbjct: 699 ITANTYNASTFLERKRVGDV--VLLPYLIEHCSYLNLDFRNDVFLRDVLEMAVLIELRTL 756
Query: 726 KSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKG 785
K + RI V KG L G DETGIL G+++ + +T++V+
Sbjct: 757 KHKARIPVEKGYHLHGIMDETGILKEGEIYC---------------CWLEDGKRTTLVQS 801
Query: 786 KVLVTKNPCLHPGDVRVLEAV-YEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIF 844
V++T+ P LHPGDV++ AV K +CI F QKG R P++ SGGDLDGD++
Sbjct: 802 SVVITRAPALHPGDVQLANAVDVPSNSPLKRLYNCICFSQKGARDLPSQLSGGDLDGDLY 861
Query: 845 FISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHA 904
++ +D ++ +T P DY + VT +++ F+ +M D LG IS H V+A
Sbjct: 862 YVMFDPEMKLKKTVIPADYPRLPPLDIGRSVTQQDMADNFLTFMKTDQLGVISNRHQVYA 921
Query: 905 DRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISF-- 962
D++ + +CL LA L S AVDF+KTG P+ + M+ ED+ I +
Sbjct: 922 DQNVMGTQCQQCLILAELCSTAVDFSKTGIAEYAPI--------EAMDEEDEVSNIKYYE 973
Query: 963 --GVLGKLYRA-----TLDSIMQIRSNAIWSEKIAEASYD-----------HDLEVDGFE 1004
G LYRA + I ++ A + + + ++ L D E
Sbjct: 974 SQKTCGMLYRAIDERQVFEDIQRLDMQANDTPDVMQHVWEFVKSRSQGILWQHLRNDAME 1033
Query: 1005 AFLGVAESHKEMYEEEMNALMNYYGAS-----TEDEILTGNLRNRASYLQRDNR 1053
K++YE M +M++Y +E E+ GN+ +A + + R
Sbjct: 1034 I--------KDIYENNMLDIMHHYSEHPSRPVSEREVFVGNILGKAGSVSKKQR 1079
>gi|358378399|gb|EHK16081.1| hypothetical protein TRIVIDRAFT_10390, partial [Trichoderma virens
Gv29-8]
Length = 1247
Score = 265 bits (676), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 213/688 (30%), Positives = 345/688 (50%), Gaps = 60/688 (8%)
Query: 300 LSHEVLFQLNSLVHNQKVSLVAADAELIQIL---------SGLSME-TALMVLQKLHKLK 349
L +LFQL +LV N + A ++++I+ +GL + T + Q K+
Sbjct: 319 LPFAILFQLQALVWNNYLHPATA-LKMLEIMDRIAKDCKRAGLPLPFTTDSMKQLFQKIP 377
Query: 350 SIC--YDPVSFVKTQL-------HVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIY 400
C DP +L + R + S + + + + +VTP +I
Sbjct: 378 YPCPGVDPQDLAAEKLVADVIEGEQMQRAEDPMRTSPYGPQLPEHQAWVLKVMVTPTRIM 437
Query: 401 CLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYS 460
GP+ E N V++ F +++ F RV F +ED L AL S+ + I+
Sbjct: 438 LHGPDGENKNRVLRMFPQHSDYFARVIFGDEDGQDL---ALLPSVNN--------SAIFE 486
Query: 461 RILTILQDGIVIGDKHYEFLAFSASQLRNNSVWM---FASNDEVSAED--VRGWMGCFNK 515
R I++DGI + + +EFL FS S LR++S W F E+ D +R +G F+
Sbjct: 487 RYRKIMKDGIHVAGRKFEFLGFSHSSLRSHSAWFCAPFVDKMELQNNDSIIRS-LGDFSD 545
Query: 516 IRSVSKCAARMGQLFSSSKQTLVVPV--QDVEMIPDVEVTSDGNTYCFSDGIGKISLSFA 573
IR +KCAAR+GQ FS + + + ++ IPDV+ T+DG FSDG+G IS
Sbjct: 546 IRIPAKCAARIGQAFSETPYAVDILKCGIGIKYIPDVK-TADGKR-VFSDGVGTISWDAM 603
Query: 574 RQVAQKCGLSHT-PSAFQIRYGGYKGVIAVD-RNSFRKLSLRR-SMLKFESRNRM-LNVT 629
++ + ++++ P+ FQ+R GG KG++++D R + + +R+ SM+KF S ++ L +
Sbjct: 604 EEIWDRLPMNNSAPTCFQVRLGGIKGMLSLDSRLKGKVICIRKESMMKFPSSDQTTLGIC 663
Query: 630 -KWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQ-KLNG 687
S+ + LNR+ I +L +G E F Q + L +L + + L+ +L G
Sbjct: 664 DTASKPLRLVLNRQTIKILEDMGTNFEWFIDQQNKALDVLRNVTASASNTSTFLESQLVG 723
Query: 688 VDSK-NILVKMLLQ-GYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDE 745
+ L+K L + G + + ++ ++ +L LK + RI V +G L G DE
Sbjct: 724 TNVGFPKLIKYLNKVGIDYRRDKFMKKVVDHTILRELRLLKHKARIPVDQGVTLFGIMDE 783
Query: 746 TGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEA 805
TG L GQ++V + ++ + RV K S+ G VL+T++P LHPGD+++ +
Sbjct: 784 TGFLEEGQIYVTFDSSYDKAQG-------RV--KGSLKDGFVLITRSPALHPGDIQLAQV 834
Query: 806 VYEMKLEE-KDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYT 864
+ +D +C++F QKG R P++ SGGDLDGD++ I WD +IP P DY
Sbjct: 835 MTPPHGHPLRDLRNCVVFSQKGSRDLPSQLSGGDLDGDLYSIFWDPFVIPKSYFTPADYP 894
Query: 865 GRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHS 924
+D VT E+I FFV +M D LG I+ H + AD + C +LA LHS
Sbjct: 895 RVTPPALDRVVTREDIADFFVKFMETDILGMIANRHQIFADFKDEGTVDQVCTNLAELHS 954
Query: 925 MAVDFAKTGAPAEM-PLALKPKEFPDFM 951
AVD++KTG P + L P+ PDF+
Sbjct: 955 TAVDYSKTGIPVTIQQLPKAPRLRPDFL 982
>gi|367053924|ref|XP_003657340.1| hypothetical protein THITE_2147717 [Thielavia terrestris NRRL 8126]
gi|347004606|gb|AEO71004.1| hypothetical protein THITE_2147717 [Thielavia terrestris NRRL 8126]
Length = 1241
Score = 264 bits (675), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 215/661 (32%), Positives = 315/661 (47%), Gaps = 105/661 (15%)
Query: 390 YRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGI 449
+RA VTP +I GPELE N V++ F+ + S F+R F +E+ L NA
Sbjct: 437 FRATVTPTRITLHGPELEPMNRVLRKFSDH-SYFIRAQFCDENGQDLFFNA--------- 486
Query: 450 FSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWM---FASNDEVSAED- 505
K ++ R ++L DGI + + Y+ L FS S LR +S W+ F V D
Sbjct: 487 --KVSLDAVFDRFKSVLTDGIQVAGRVYKLLGFSHSSLRAHSAWLSAPFIHEGRVQIPDL 544
Query: 506 VRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEM--IPDVEVTSDGNTYCFSD 563
+ +G FN+I+S ++ AAR+GQ FS + + + +++ +PDVE N FSD
Sbjct: 545 IITGLGDFNRIQSPARRAARIGQAFSETPYAVDLDENMIQVLEVPDVE----RNGRVFSD 600
Query: 564 GIGKISLSFARQVAQKCGLSHT-PSAFQIRYGGYKGVIAVD-RNSFRKLSLRRSMLKFES 621
G+G IS A V S P+ FQIR+ G KG++++D R K+ +R SM+KFES
Sbjct: 601 GVGTISAGAADAVYNVIPKSKGYPTCFQIRWAGAKGMLSLDPRLEGNKICIRPSMVKFES 660
Query: 622 RNRMLNVTKW-SESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALD 680
+R L + S +P LN ++I +L +G D+ F +Q ++L L R
Sbjct: 661 NDRQLEICDMASRPIPMVLNHQLIKILEDMGAPDKWFLELQNRELQRL------RAVTAT 714
Query: 681 VLQKLNGVDSKNI-----LVKMLLQGYEPNVEPYLSMMLLSHHE----NQLSDLKSRCRI 731
V + V +K I L K+LLQ ++ + L + E N+L LK + RI
Sbjct: 715 VCNTASFVRAKKIGQSIQLHKLLLQTEAMGLDYWQDDFLRTAVEAIVLNELRLLKHKARI 774
Query: 732 YVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTK 791
VPKG L G DETG L+ G+V+V T E+ + G V+V +
Sbjct: 775 PVPKGITLFGIMDETGFLDEGEVYV--TYDAEDRYCQPPG------------PGPVIVAR 820
Query: 792 NPCLHPGDVRVLEAVYEMKLEEKDYV---DCIIFPQKGERPHPNECSGGDLDGDIFFISW 848
+P LHPGD++V A + + + +C+IF G+R P++ SGGDLDGD F + W
Sbjct: 821 SPALHPGDIQV--AYNRIPPDGHPLIQQRNCLIFSSWGDRDLPSQLSGGDLDGDQFHVIW 878
Query: 849 DNDLIPCE-TEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRD 907
D ++ T P Y +D V +I FFVD+M D LG I+T H + AD+
Sbjct: 879 DPQVVASVITFEPAKYDRVSPLELDRPVVSADIAAFFVDFMRTDHLGVIATRHKILADQR 938
Query: 908 PDKARSSKCLHLATLHSMAVDFAKTGAPA---EMPLALKPKEFPDFMEREDKPR------ 958
C+ LA LHS AVDF+KTG E+P +LK + PDF+ R + +
Sbjct: 939 EGGTLDQDCVRLAELHSRAVDFSKTGRAVERWELPQSLKWR--PDFLSRGPEIKIHDISA 996
Query: 959 ---------------------------YISFGVLGKLYRATLDSIMQIRSNAIWSEKIAE 991
Y S +LGKLYRA + IW+E I
Sbjct: 997 IELDQYAASRGDEDVDDVNDEGPQHRYYRSEKILGKLYRA-------VDERKIWAEDIRM 1049
Query: 992 A 992
A
Sbjct: 1050 A 1050
>gi|409039622|gb|EKM49158.1| hypothetical protein PHACADRAFT_201955 [Phanerochaete carnosa
HHB-10118-sp]
Length = 908
Score = 264 bits (674), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 244/872 (27%), Positives = 393/872 (45%), Gaps = 105/872 (12%)
Query: 281 EFCTTSEIVPLVKCRPGFNLSHEVL--------FQLNSLVHNQKVSLVAADAELIQILSG 332
+F T +E VP V+ PG L + + +L+ + +++ D EL++ L+
Sbjct: 60 DFSTPTEHVP-VQAMPGAEFVDRCLQCLPFDKRYLIEALLSHGTITIPEVD-ELLRALAH 117
Query: 333 LSMET-ALMVLQKLHKLKSICYDPVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYR 391
+ +++L+ L K + + ++ L + R + +S R ++ + R
Sbjct: 118 YQRDDDQIVILEGLFK-----WTRQASIEKDLQDVARRATRLHISDTGR----HLTAVRR 168
Query: 392 ALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFS 451
LVTP + P ETSN ++++ Y F+RV FV++D P + I +
Sbjct: 169 CLVTPTRCVLNPPTWETSNEMLRDHEHYVDRFLRVQFVDDD-GDFPVVGETLVIDDEMQG 227
Query: 452 KPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMG 511
R +++R+ L DG+VI +HY F FS SQ + WM A + + V MG
Sbjct: 228 ---REGVFARVRRALSDGLVIAGRHYVFATFSESQAKERGCWMIAEDGPFTVSAVLAKMG 284
Query: 512 CFNKIRSVSKCAARM-GQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISL 570
++ R ++K AAR G + K T+ + D++ N+Y F+DG+G S
Sbjct: 285 DLSQERIIAKHAARQRGSM--PKKITINRALDDIKR----------NSYVFTDGVGHFSH 332
Query: 571 SFARQVAQKCGLSHTP-SAFQIRYGGYKGVIAVDRNSF---RKLSLRRSMLKFES--RNR 624
S A+ A+ G P SA QIR GG KGV+AV ++ ++ LR SM+K +
Sbjct: 333 SLAQACAKTLGYRLIPVSAAQIRIGGAKGVLAVVQDETLGENEVRLRPSMIKLQGVKPEP 392
Query: 625 MLNVTKWSESMPCFLNREIISLLSTLGV-KDEVFEAMQQQQLILLGKMLINREAALDVLQ 683
LN+ K + LNR+ I L+ GV D +F+ Q++ + G E+ D +
Sbjct: 393 TLNIIKVATYSKATLNRQAILLMEDRGVSSDTLFDIFTQEKRRIQGL-----ESGFDPM- 446
Query: 684 KLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCF 743
+L V + + + +P V+ S++ L DLK + I + + L+G
Sbjct: 447 RLASVTTFPLARALRHDIKDPVVQNVTSLVKC----RLLCDLKWKAWIELSESAYLMGIA 502
Query: 744 DETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVL 803
DET L G++F ++ H +++ + + +NPCLHPGDVR++
Sbjct: 503 DETDSLQEGEIFCQI---------------HPSGSDPQVIEARCTIYRNPCLHPGDVRLV 547
Query: 804 EAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDND-LIPCETE-PPM 861
AV KL + + I+F +G R PN +GGDLDGD + + WD LIP E PM
Sbjct: 548 TAVDCPKL--RHLRNVIVFSTRGCRDLPNMLAGGDLDGDCYSLIWDPRLLIPEGGEYEPM 605
Query: 862 DYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLAT 921
DYT + ++ VT+E+ + F+D M ND LG + AH+ AD +C LA+
Sbjct: 606 DYTPPPAVRSEYPVTIEQTKQHFLDTMKNDVLGRVCNAHMALADL--HGPSDFQCRELAS 663
Query: 922 LHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKP----------RYISFGVLGKLYRA 971
L S AVDF+KTG + + +E+PDFM +E K Y S VLG+++R
Sbjct: 664 LASQAVDFSKTGVAVQQSEIPRLEEYPDFMGKEYKSIRIFKKQEIRSYSSEKVLGRMFR- 722
Query: 972 TLDSIMQIRSNAIWSEKIAEASYDHDLEVD---GFEAFLGVAESHKEMYEEEMNALMNYY 1028
+I I+ E + A LE GF +L A HK YE E+ L+ Y
Sbjct: 723 ------EIDPEPIFEEAVELAGDPRLLEAGEETGFREYLQEAAMHKARYEFELTGLLRRY 776
Query: 1029 GASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSCKENEHP- 1087
+ + + LR+ + L+ + D R+ + A + EHP
Sbjct: 777 NINETECVAGLLLRSPKTRLKVEK----DYDLRVAVRDAYSHIIAATIARADGYIKEHPV 832
Query: 1088 -----QLASAWYHVTYSPSYCKERMALLSFPW 1114
Q AW Y +Y +E L W
Sbjct: 833 SEDSTQYRLAWAIAAYKLTYDQEYSTYLKIDW 864
>gi|281207108|gb|EFA81291.1| RNA-directed RNA polymerase [Polysphondylium pallidum PN500]
Length = 2852
Score = 263 bits (672), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 222/760 (29%), Positives = 360/760 (47%), Gaps = 92/760 (12%)
Query: 392 ALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFS 451
A +TP ++ P ++ N ++ F + FM V F EED L I+ F
Sbjct: 1323 AYITPTRVILNLPRIQLGNRCIRQFP--SERFMSVQFTEED--------LQIRIEYQDFL 1372
Query: 452 KPYRTKIYSRILTILQDGIVIGD-KHYEFLAFSASQLRNNSVWMFASNDEVSAE----DV 506
P+ YS IL +GI + + + FL S+SQ+RN W + + V+ E ++
Sbjct: 1373 LPF----YSHILL---NGINVPEMGTFYFLGSSSSQVRNYQSWFYCVEEGVNKESRLKEI 1425
Query: 507 RGWM-GCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGI 565
R M G + S K M +F S+ T+ +P + D V +D N F++G
Sbjct: 1426 REAMIGKTDSSWSARKALRAMSLVFPSTIPTIRIPPHEYHEGLDDIVRNDHN---FTEGC 1482
Query: 566 GKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSFRKLSLRRSMLKFESR--- 622
G + + AR++A SA+QIR GG KGV++V + R + LR+SM KF +
Sbjct: 1483 GYVGIETAREIAIAGNFPQDTSAYQIRIGGNKGVVSVHHSIRRGIYLRKSMRKFNTTDEH 1542
Query: 623 --NRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALD 680
NR L V S C LNR+II+LL LGV D F ++QQ L L + +
Sbjct: 1543 AYNRTLEVISVSSKKACNLNRQIINLLVGLGVLDGFFLSLQQAALDKLAHIFNDESVRRH 1602
Query: 681 VLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLI 740
++ +L+ +D ++ L +P + L + L +L +K +C I + R ++
Sbjct: 1603 IMHELSSIDEA--FDELDLAANDPLICSSLQLCYLK----KLDQIKDKCMIEIDSARTVL 1656
Query: 741 GCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDV 800
G DE+GIL +VF+++++ E+ + ++ G+V V KNPCLHPGD+
Sbjct: 1657 GVSDESGILGPDEVFLQISIDEEDGHISRK-----------VITGQVFVCKNPCLHPGDI 1705
Query: 801 RVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCET-EP 859
RVL AV +L YVD I F Q GE P+ +CSG DLDGD +F+ +D ++ T EP
Sbjct: 1706 RVLTAVDVPELRNC-YVDVIAFSQNGEVPNFKQCSGSDLDGDRYFVGFDQTMVKFITPEP 1764
Query: 860 PM--DYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADR-DPDKARSSKC 916
P D + +D + +++ K ++ + +LG I+ +HL D+ P +
Sbjct: 1765 PFLGDESANTKVEPPYDGSHKQLVKQYITNITRGSLGKIALSHLAICDKFSPTHPLA--- 1821
Query: 917 LHLATLHSMAVDFAKTGAPAEMPLALKP-----KEFPDFMERE--DKPRYISFGVLGKLY 969
+ LA H + VD KTG ++P +K K +P+FME K ++S +LGKLY
Sbjct: 1822 IELAIQHFIEVDAFKTGVNGKVPDIVKKHLNYFKLYPNFMESSMPKKNYWVSHKILGKLY 1881
Query: 970 RATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYG 1029
+ + + AI I + D L VDG++ +L A+ Y+ +N+L+ Y
Sbjct: 1882 Q------ISVPLKAI-PRYIPDTFVDEGLLVDGYQEYLADAKKTYTRYKFAINSLLTRYD 1934
Query: 1030 ASTEDEIL-------TGNLRNRASYLQRDNRRYGDMKDRI------LLSAKNLQNEAKEW 1076
E++I+ ++R + + Y +++D + K++ + K+
Sbjct: 1935 IDREEDIIIEFIKETINSMRYTKLIIDELKKSYHEIQDSFRDEFIRVFPGKDV--DEKKR 1992
Query: 1077 FGSSCKENEHPQLASAWYHVTYSPSYCKERMALLSFPWIV 1116
F S + + SAWY V YS E L+F WIV
Sbjct: 1993 FNSEAIQKK----VSAWYKVAYSDV---ENDKTLTFYWIV 2025
>gi|325095101|gb|EGC48411.1| RNA-dependent RNA polymerase [Ajellomyces capsulatus H88]
Length = 1209
Score = 263 bits (672), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 233/817 (28%), Positives = 369/817 (45%), Gaps = 132/817 (16%)
Query: 299 NLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSIC------ 352
N+ + V FQL LV N +S A + ++ + L +E +V++ L +L S
Sbjct: 320 NMPYRVRFQLQKLVWNGDISPAKAISFASRVRAALVIEDLDIVVRALMRLSSDVKWPSPD 379
Query: 353 -----YDPVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELE 407
D + V+ + L + ++ R + N +S +RA +TP Y GP E
Sbjct: 380 VEASEVDVPALVEVFKNALESTAREREMTRSNRPMHPNHISIHRAQITPCGTYLDGPHAE 439
Query: 408 TSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQ 467
T N V+++++ + F+RV FV+E + + ++ IF SR T+L+
Sbjct: 440 TKNRVLRHYSSHVDHFLRVEFVDETGDPVRYDPRASIDM--IFE--------SRFKTVLK 489
Query: 468 DGIVIGDKHYEFLAFSASQLRNNSVWMFAS--NDEV--SAEDVRGWMGCFNKIRSVSKCA 523
GI I + +EFL FS S LR+ + W A D + +A + +G F+ I+S +K
Sbjct: 490 SGINIAGRKFEFLGFSHSSLRSQTCWFVAPFYKDRILYNASTIIQNLGRFDHIQSPAKQV 549
Query: 524 ARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLS 583
AR+GQ FS + ++ + + + + DVE N FSDG+G
Sbjct: 550 ARIGQTFSDTLTSIPISDKYISIGKDVE----RNGRVFSDGVGA---------------- 589
Query: 584 HTPSAFQIRYGGYKGVIAVD-RNSFRKLSLRRSMLKFESRN--RMLNVT---KWSESMPC 637
KG+I++D R + L LR SM+KF N N+ + +P
Sbjct: 590 -------------KGMISLDSRKKGKSLVLRPSMIKFHLPNSYNAFNIEICGSGLKPLPF 636
Query: 638 FLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNI--LV 695
FLN ++I +L LGV D VF +Q ++ L + A L+ N S + L+
Sbjct: 637 FLNAQLIKILEDLGVDDSVFLRLQADEISRLRATATSTAKAARFLEDTNIAKSVGLPWLI 696
Query: 696 KMLLQ-GYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQV 754
+L G + + +L ++ +L DLK R RI VP L G DETGIL G+V
Sbjct: 697 NILEGFGLRHSNDEFLRRVMELAVLIKLRDLKYRARIRVPNAVTLFGIMDETGILKEGEV 756
Query: 755 FVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAV-YEMKLEE 813
F L K + +V +V+VT++P +HPGDV++ AV
Sbjct: 757 FC------TSLSDKGV--------REVLVNPRVVVTRSPAMHPGDVQIARAVDVPADSPL 802
Query: 814 KDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDH 873
+ +CI F Q G R P+ SGGDLDGD++ + +DN L+P P +Y + +++
Sbjct: 803 RQLHNCIAFSQHGHRDLPSMLSGGDLDGDLYNVIFDNTLLPKRIARPAEYPRVQEKVLGR 862
Query: 874 DVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTG 933
V E+I FFV +M D LG I+T H ADR P +CL LA LHS AVDF+KTG
Sbjct: 863 AVVREDIIDFFVTFMQQDQLGRIATIHQALADRRPLGTFDPECLLLAELHSTAVDFSKTG 922
Query: 934 APAEMPLALK-PKEFPDFMEREDKPR-------------------------------YIS 961
P ++ K P PDF + R Y S
Sbjct: 923 VPVDLARIPKFPSCRPDFQAPSPRIRIAENLSLLEGDMDAVQDGGDEDDDERPAVRFYKS 982
Query: 962 FGVLGKLYRATLD--------SIMQIRSNAIWSEKIAEASYDH-DLEVDGF--EAFLGVA 1010
+LGKLYR+ + S M++ S A+ + + + ++ E +GF + + A
Sbjct: 983 ENILGKLYRSIDEVKFLQHRQSAMELPS-AMGAPSVLQGVWEFVQREAEGFLWDHHIEHA 1041
Query: 1011 ESHKEMYEEEMNALMNYYGAS------TEDEILTGNL 1041
+++YE+ + +M Y ++ TE E+ G +
Sbjct: 1042 LDIRQIYEDNLLEIMARYSSTPWKSSITEYEVFVGTI 1078
>gi|322712330|gb|EFZ03903.1| rna-dependent rna polymerase [Metarhizium anisopliae ARSEF 23]
Length = 1114
Score = 263 bits (671), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 229/858 (26%), Positives = 379/858 (44%), Gaps = 110/858 (12%)
Query: 303 EVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSFVKTQ 362
+++ + L+H+ + ++ A + L + E+AL ++ H + + S T+
Sbjct: 226 DIIDEARHLLHHAEPNVPAVTQLFRRRLFQAASESALDASRRGHNVSRRPENSASSRVTE 285
Query: 363 LHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASD 422
H+L + + R + +ALVTP +I GP+LET N V++ F +
Sbjct: 286 RHLLEQQAHDSRTPASGRAL------VLKALVTPTRIVLRGPDLETKNRVLRMFPGKSDH 339
Query: 423 FMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAF 482
F+RVTF +ED L + I+ IL G+ + + +EFLAF
Sbjct: 340 FLRVTFGDEDGEDLSYG-----------DRTCNDDIFEHYRRILLRGLTVAGRRFEFLAF 388
Query: 483 SASQLRNNSVWMFAS--NDEVSAEDVRGW---MGCFNKIRSVSKCAARMGQLFSSSKQTL 537
S S LR++S W + ++ +D R +G F IR +KCAAR+GQ FS + L
Sbjct: 389 SHSSLRSHSAWFCSPFVGQSLTVQDCRSIVKSLGVFQNIRIPAKCAARIGQAFSETPIAL 448
Query: 538 VVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQV----AQKCGLSHTPSAFQIRY 593
+ + + + +V + T FSDG+G IS+ ++V ++ G P+ QIR
Sbjct: 449 SLSQRGIRLQYIDDVKNSAGTRVFSDGVGTISIDALQEVWDCLPERLG---RPTCIQIRI 505
Query: 594 GGYKGVIAVDRNSFRKLSLRRS--MLKFESRN-RMLNVTK-WSESMPCFLNREIISLLST 649
G KG++++D K RS M+KF+S++ +L + S + LNR+I+ +L
Sbjct: 506 AGVKGMLSLDSQLRGKYICIRSESMMKFKSQDLDVLGICDVGSRPLRFTLNRQIVKILED 565
Query: 650 LGVKDEVFEAMQQQQL---ILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNV 706
+G+ F A Q + + + + + A L + + ++ K+ G +
Sbjct: 566 MGIHHNWFLAWQDKAIRNFLSVASSTRHTRAFLRQYEVGTSLRLPELIEKLEENGIDYRE 625
Query: 707 EPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELE 766
+ +L ++ +L LK + RI V K L G DETG L GQ++V +
Sbjct: 626 DDFLRSVVGQAVLAELRFLKYKARIPVSKAVTLFGVMDETGFLQEGQIYVTYDVA----- 680
Query: 767 SKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAV---YEMKLEEKDYVDCIIFP 823
+ + KG+ LVT++P LHPGD++ +E V + L E +CI+F
Sbjct: 681 ----DHLGATGIEAAPAKGRALVTRSPALHPGDIQYVEMVTPPFGHALLE--LRNCIVFS 734
Query: 824 QKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKF 883
+G R P+ SGGDLDGD++ + WD D IP P +Y + V E++ F
Sbjct: 735 SQGSRDLPSMLSGGDLDGDLYSVIWDPDAIPTRNLKPAEYPRISPKPNKRQVRQEDMANF 794
Query: 884 FVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALK 943
F+D+M ND LG I+T H ++AD P +C+ LA +HS AVD++K+G P E K
Sbjct: 795 FIDFMKNDVLGIIATRHQMYADLKPAGTLDPECIRLAEMHSAAVDYSKSGVPVEAHCIPK 854
Query: 944 -PKEFPDFM-------------------------EREDKP------RYISFGVLGKLYR- 970
P+ DF+ E E P Y S +LG+L+R
Sbjct: 855 VPQARADFLVPAPTLALHLSNDASYFERLTACISESETSPAQPGFATYQSNKILGRLFRE 914
Query: 971 ---------ATLDSIMQIRSNAIWSEKIAEASYDH---DLEVDGFEAFLGVAESHKEMYE 1018
+T + S IW + D ++ +D +E L A++ + Y+
Sbjct: 915 IDEHRIWKESTQAEVTTRTSGGIWDGLLKHVESDLSAVNIILD-WETKLATAKNLRTEYD 973
Query: 1019 EEMNALM-----NYYGASTEDEILTGNLRNRASYLQRDNRRY-GDMKDRILLSAKNLQNE 1072
+ + N G +E E +G N A R +R Y + DR+ E
Sbjct: 974 MALAETLRQFSVNPRGQVSEVEAFSGRSLNSAGRQSRRHRVYSAKLADRM--------EE 1025
Query: 1073 AKEWFGSSCKENEHPQLA 1090
W +E +LA
Sbjct: 1026 LTAWMSGRIRECSALELA 1043
>gi|258569467|ref|XP_002543537.1| predicted protein [Uncinocarpus reesii 1704]
gi|237903807|gb|EEP78208.1| predicted protein [Uncinocarpus reesii 1704]
Length = 1004
Score = 263 bits (671), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 184/611 (30%), Positives = 303/611 (49%), Gaps = 75/611 (12%)
Query: 377 SHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKL 436
+ + L N + R VTP IY GP +ET N V++ + + + F+RV FV+E ++
Sbjct: 419 ASRNLTHPNNVKVNRTQVTPSGIYLYGPNIETKNRVLRQYDNHINHFLRVEFVDEHGDRV 478
Query: 437 ---PANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVW 493
P +L IF Y R +L++GI IG + + FL FS S LR+ + W
Sbjct: 479 YYDPQASLEE-----IF--------YQRFKGVLKNGIQIGGRRFSFLGFSHSSLRSQTCW 525
Query: 494 MFA-----SNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIP 548
A + + E + +G F+ I S SK AAR+GQ FS ++ ++ +P +D
Sbjct: 526 FVAPFITNTGERFDVESIIQGLGSFDHIYSPSKLAARIGQTFSETQSSIKIP-EDAVYFD 584
Query: 549 DVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSH--TPSAFQIRYGG----------- 595
+ ++ +G FSDG+G +S S ++ ++ L P+ FQIR+ G
Sbjct: 585 EPDIKRNGR--VFSDGVGTMSPSIMYKIWKEYALRERVKPTIFQIRFAGNSLPSTFPCYP 642
Query: 596 -----------YKGVIAVD-RNSFRKLSLRRSMLKFESRNRMLNVT---KWSESMPCFLN 640
KG++++D R +L LR SM+KF+++ N+ + ++P +LN
Sbjct: 643 TANTVFCIILGAKGMVSLDSRLKGDQLKLRESMIKFKAKG-AFNIEICGSGTRALPFYLN 701
Query: 641 REIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQ 700
++I +L LGV+ F +Q ++ L + + A L++ N ++ + + L+Q
Sbjct: 702 AQLIKVLEDLGVRPSAFIDLQTDEIDRLRSVEKSVIKAGQFLEQTN--IAQGVRLPWLIQ 759
Query: 701 ---GYE--PNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVF 755
G E + +P+L ++ ++ DLK R RI VP L G DE+G L G++F
Sbjct: 760 VIRGLELHHDQDPFLRSVIQLAVFLKMRDLKYRARIRVPNAVTLYGIMDESGYLKEGEIF 819
Query: 756 VRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAV-YEMKLEEK 814
+F + +V+ +++VT++P LHPGDV+ AV +
Sbjct: 820 C--------------TFLTEGGVREILVRDRIIVTRSPALHPGDVQFANAVDVPATSPLR 865
Query: 815 DYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHD 874
+C++F Q G+R P+ SGGDLDGD++ I +D L+P T P DY ++++
Sbjct: 866 KLHNCVVFSQHGQRDLPSMLSGGDLDGDLYNIIYDERLMPRRTIEPADYPRVEEKLLNRR 925
Query: 875 VTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGA 934
V ++I FFV +M D LG I+T H AD+ + CL LA LHS AVDF+K+G
Sbjct: 926 VVRDDIIDFFVTFMEQDQLGRIATIHQALADQKIEGTLDQDCLLLAELHSTAVDFSKSGI 985
Query: 935 PAEMPLALKPK 945
P + L P+
Sbjct: 986 PVSVYLVYDPE 996
>gi|403346586|gb|EJY72692.1| Rna-dependent RNA polymerase [Oxytricha trifallax]
Length = 1470
Score = 262 bits (670), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 198/665 (29%), Positives = 326/665 (49%), Gaps = 93/665 (13%)
Query: 363 LHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASD 422
LH R+ K++ +RL +TP Y + +N V++ + + S
Sbjct: 544 LHDFKRSTKNVNFLRQRRL-----------FITPTLDYYQPAYEDETNRVIRQYRDHLSR 592
Query: 423 FMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAF 482
F+RV+FV E +++G + + + +L +GI +G+ +FL++
Sbjct: 593 FVRVSFVNE------------YLEKGYYFSDQMNWLLGYLHHVLVNGIQLGNYVLKFLSY 640
Query: 483 SASQLRNNSVWM------------FASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLF 530
S SQ++N+S WM F N+ + + MG F++ +++ K AR GQ F
Sbjct: 641 SNSQIKNHSCWMLVESLVPNKDFDFPLNENI----IMRSMGDFSQEKNMLKRYARRGQCF 696
Query: 531 SSSKQTLVVPVQDVEM-IPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAF 589
S++K L + +V +PDV+ N + F+DG G IS A+ +A++ + SAF
Sbjct: 697 STTKFILQLDKSEVTYNLPDVK----RNGFIFTDGCGYISPELAQLIAEQFSFKRS-SAF 751
Query: 590 QIRYGGYKGVIAVD-RNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLS 648
QIR+GG KGV+ ++ R R++ LR S +KF+S + LNV + FLNR+II L++
Sbjct: 752 QIRFGGTKGVLMLNPRLEGRQIQLRDSQIKFQSNDLGLNVVRCGTYSQGFLNRQIIILMN 811
Query: 649 TLGVKDEVFEAMQQQ-------------------QLILLGKMLINREAALDVLQKLNGVD 689
LGV + VF +Q++ + I K+ N+ +L + KL +
Sbjct: 812 CLGVPESVFLELQRKAKEYAQVQEIYNNLIKKTSKAIKAFKLSQNKSKSLQQITKLINLS 871
Query: 690 ------SKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCF 743
+ L LL GY +P S +L + + +LK + RI +P +L+G
Sbjct: 872 LGPSKWFEQSLKTALLCGYNIPNDPIFSSILYTMQLSSFMNLKKKARIIIPDSCVLLGIV 931
Query: 744 DETGILNYGQVFVRVTMTREELESK---------DQSFFHRVDDKTSIVKGKVLVTKNPC 794
DE GIL +VF++V L+ K +Q + D K + V+VT+NPC
Sbjct: 932 DEFGILEEDEVFIQVKQDNYSLKKKPWLWDINLNNQEELEK-DSKPLQICQDVIVTRNPC 990
Query: 795 LHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIP 854
HPGD+R+L+AV + +L + ++F KGERP N+ +GGDLDGD++F+ WD+ ++
Sbjct: 991 THPGDIRLLKAVNKPELSH--LFNVVVFSSKGERPQCNKMAGGDLDGDVYFVCWDSLILS 1048
Query: 855 C----ETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADR-DPD 909
+ P Y + + I + + E I +F+ Y+ D LG ++ HL D+ D
Sbjct: 1049 HIKKENIQEPATYV-KPTLISEQPIDSEHIADYFIFYLQRDVLGKLANMHLALCDQIGVD 1107
Query: 910 KARSSKCLHLATLHSMAVDFAKTGAPAEMP----LALKPKEFPDFMEREDKPRYISFGVL 965
+C L+ L S+AVDFAK G + L +PDF E+ ++ +S GVL
Sbjct: 1108 GPLKEECQELSALQSIAVDFAKHGESVDKKNFEHLQKMLDNWPDFFEKSNQKMRVSEGVL 1167
Query: 966 GKLYR 970
G LYR
Sbjct: 1168 GMLYR 1172
>gi|353235419|emb|CCA67432.1| related to RNA-directed RNA polymerase (RdRP) [Piriformospora
indica DSM 11827]
Length = 1186
Score = 262 bits (670), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 195/627 (31%), Positives = 317/627 (50%), Gaps = 70/627 (11%)
Query: 385 NVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTS 444
V C+RA +TP I GP + +N V++ + KYA F+R+ F EED L +
Sbjct: 396 GVFECHRATITPSSIILTGPLPDETNRVIRKYRKYAHKFIRIDFTEEDGLHLRKE---KN 452
Query: 445 IQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWM---FASNDE- 500
+ G + RI +++G+++ + +EFLA+S+S L+ ++VW F ++D
Sbjct: 453 VDLGAI-------LDDRIGEFMKNGLLVAGRRFEFLAYSSSALKEHAVWFMTPFTTSDGQ 505
Query: 501 -VSAEDVRGWMGCFNK-IRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNT 558
V++E +R +G F+K I S+ AR+ Q FSS++ ++ + V ++ IPD E + G+
Sbjct: 506 YVTSESIRRSLGDFSKVIYCPSRYGARLSQAFSSTEPSITIKVNEIRFIPDKE-SDQGSL 564
Query: 559 YCFSDGIGKISLSFARQVAQK---------CGLSHTPSAFQIRYGGYKGVIAVD-RNSFR 608
Y +DG+G +S A ++ K TPSAFQIR GG KG++ VD R R
Sbjct: 565 Y--TDGVGTMSPQVAEEIWAKYTEPRSKRSRRRLKTPSAFQIRLGGLKGMLCVDSRLQGR 622
Query: 609 KLSLRRSMLKFESRNRMLNVTK-WSESMPCFLNREIISLLSTLG-VKDEVFEAMQQQQLI 666
+ +R SM KF S +R + + + + M FLNR +I LL TL V E F A+Q + +
Sbjct: 623 VVCVRDSMNKFHSNDREVEIARAFDRPMTMFLNRPLIMLLETLKKVPLEPFMALQTKAVE 682
Query: 667 LLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVE-----------PYLSMMLL 715
+ + + A +L++ G+ + L + LQ ++ +V P+L ML
Sbjct: 683 ETRDAMKSFDTAARLLEQY-GLGTAFRLTSVFLQLHKLDVALALKDQSQGLLPFLGRMLQ 741
Query: 716 SHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHR 775
+ L DLK + RI VP L+G DE L +++ RV
Sbjct: 742 FVENHILRDLKYKARIPVPNAWTLVGVSDEYDYLGENEIYARVRT--------------- 786
Query: 776 VDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEE----KDYVDCIIFPQKGERPHP 831
+D + ++G V+++++P +HPGD R++ A+ + +D +C++FP KG P
Sbjct: 787 IDGEEQYLEGPVMISRSPTVHPGDARMVWAIGKPSRGAPPGLEDLTNCVVFPCKGHPSLP 846
Query: 832 NECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMIND 891
+GGDLDGD++ + D L DY + +D T++++ +F ++Y+ ND
Sbjct: 847 QCLAGGDLDGDLYCLVLDPQLHFRWQFQHGDYDPPQLVTLDRPSTIKDVAQFVINYIKND 906
Query: 892 TLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAE---MPLALKPKEFP 948
LG IST ++ AD D C+ LA LHS+AVD+ KTG E MP +L+ P
Sbjct: 907 LLGVISTRSMLIADIREDCLADEDCVKLAKLHSIAVDYPKTGRHVEFEQMP-SLESNRRP 965
Query: 949 DFMERE----DKPRYISFGVLGKLYRA 971
D+ E D Y S +G L+RA
Sbjct: 966 DWHANELNDNDPELYQSNRHIGHLFRA 992
>gi|453080014|gb|EMF08066.1| RdRP-domain-containing protein, partial [Mycosphaerella populorum
SO2202]
Length = 446
Score = 262 bits (670), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 159/434 (36%), Positives = 241/434 (55%), Gaps = 34/434 (7%)
Query: 456 TKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNK 515
+++SR+ + GI +G +HYEFLAF +Q R++ + FAS V+A D+R WMG F
Sbjct: 9 NEVFSRVKRAMAQGINVGGRHYEFLAFGNAQFRDHGAYFFASTTGVTAADIRDWMGDFTS 68
Query: 516 IRSVSKCAARMGQLFSSSKQTLVVP-VQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFAR 574
IR ++K +R+GQ FS+++ +P +VE I DVE N +CF+DG+GKIS AR
Sbjct: 69 IRIIAKYVSRLGQCFSTTR---AIPHAVNVEKIDDVE----RNGFCFTDGVGKISPFLAR 121
Query: 575 QVAQKCGLSHT----PSAFQIRYGGYKGVIAVD-RNSFRKLSLRRSMLKFESRNRMLNVT 629
+A G++++ PS FQIR G KGV+AVD R K+ +R S KF +++ L +
Sbjct: 122 MIAHHYGMANSEQDYPSVFQIRLAGCKGVLAVDPRLKGMKIQIRPSQQKFPAKSNGLEIC 181
Query: 630 KWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVD 689
+ S+ LN ++I +LS LGV DEVF + L L + L + + AL++LQK +
Sbjct: 182 RISQFSTASLNVQLILVLSALGVPDEVFLNKLRNMLSDLQEALDSEQKALELLQKNVDFN 241
Query: 690 SKNI-LVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGI 748
I L M+ G+ +P++ L L LK + RI++ +G L+GC DE+
Sbjct: 242 QMTISLACMIFDGFMATKDPFVMTCLRLWRSWNLKYLKEKARIFIDQGAFLLGCTDESAT 301
Query: 749 L--------NYGQVFVRVTMTREELESKDQS----FFHRVDDKT-----SIVKGKVLVTK 791
L + + T +++ D+S F ++ D +V G V++ +
Sbjct: 302 LRGHFKSVADPNGILKDQQSTEADVDKHDESALPEIFLQIPDAEKPGSYKVVTGIVVLAR 361
Query: 792 NPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDND 851
NP LHPGD+RV++AV L + +C++ PQ G+R N CSGGDLDGD F + WD +
Sbjct: 362 NPSLHPGDIRVVKAVDNAAL--RHLKNCVVLPQTGDRDVANMCSGGDLDGDDFIVMWDKE 419
Query: 852 LIPCE-TEPPMDYT 864
LIP E PMDYT
Sbjct: 420 LIPPEWNHEPMDYT 433
>gi|308474534|ref|XP_003099488.1| hypothetical protein CRE_01169 [Caenorhabditis remanei]
gi|308266677|gb|EFP10630.1| hypothetical protein CRE_01169 [Caenorhabditis remanei]
Length = 1637
Score = 262 bits (670), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 217/853 (25%), Positives = 386/853 (45%), Gaps = 154/853 (18%)
Query: 391 RALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIF 450
+ + TP ++ + PE N V++ + + +R+ F ++D K+ N ST ++
Sbjct: 493 KIIFTPTRVVYVAPETLMGNRVLRRYDRDGCRVLRIMFRDDDNQKMRTNKTSTLLE---- 548
Query: 451 SKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAED----- 505
+ + L+DGI + K++ +L S SQ+R++ + +
Sbjct: 549 ---------TTVHRYLRDGITVAGKNFGYLGSSNSQMRDSGAYFMEKYSSAQCREYEEKY 599
Query: 506 --------------VRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVE 551
R +G F I ++ K AR+GQ F+ S+ + V ++ I +
Sbjct: 600 KLKPPIDFNPKIQSARKNLGRFETIDNIPKMMARLGQCFTQSRLS-GVNLERCTYITTFD 658
Query: 552 VTSDGNT----YCFSDGIGKISLSFARQVAQKCGLSH-TPSAFQIRYGGYKGVIAVD--- 603
+T N Y FSDG+G +S FA+ V++ L PS FQ R+ G KGVIAV+
Sbjct: 659 LTGGKNVKRDEYTFSDGVGLMSHLFAKMVSEVMDLGKGVPSCFQFRFRGMKGVIAVEPLL 718
Query: 604 --------RNSFRKLS----------LRRSMLKFESRNR---MLNVTKWSESMPCFLNRE 642
N+ ++S R S +KF S+ + + K+S +P LN+
Sbjct: 719 DNIRLWCVENNVPEVSEETSWGLSCVFRPSQIKFISKRHPRDQVEIVKYSAPVPVSLNKP 778
Query: 643 IISLLSTLGVKDEV---------FEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNI 693
I++L + + E + +Q++ + +++ + L++L + +
Sbjct: 779 FINILDQVSEMQSLECHRRVTNRIEELLDRQMLQFAQQMVDETFCRNRLKEL----PRRV 834
Query: 694 LVKMLLQ--GYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPK--GRLLIGCFDETGIL 749
+ L G+ + EP+ ++ + + ++ + +I +P GR ++G DETG L
Sbjct: 835 DIDYLRTTWGFTLSSEPFFRSLIKASIKFLITRQLRKEQIPIPADLGRSMLGVVDETGRL 894
Query: 750 NYGQVFVRVTMTREELESKDQSFFHRVDDKTS---IVKGKVLVTKNPCLHPGDVRVLEAV 806
YGQ+FV++T ++ ++ KT+ ++ G VL+TKNPC+ GDVR+ EAV
Sbjct: 895 QYGQIFVQLT----------KNLALKIPPKTAARQVLTGTVLLTKNPCIVAGDVRIYEAV 944
Query: 807 YEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGR 866
+L + D ++FPQ G RPHP+E +G DLDGD + I WD L+ + E P D+T
Sbjct: 945 DIPELHHMN--DVVVFPQHGPRPHPDEMAGSDLDGDEYSIIWDQQLLLDKNEDPFDFTSE 1002
Query: 867 RSRIMDHDVTLEEIHK-FFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSM 925
+ + + ++ + + F+V Y+ D++G IS +HL ++D+ +R C+ LA +
Sbjct: 1003 KQKSSFKEEEIDGLMRDFYVTYLKLDSVGTISNSHLHNSDQYGLNSRV--CMDLAKKNCQ 1060
Query: 926 AVDFAKTGAP--------------AEMPLALKPKEFPDF-MEREDKPRYISFGVLGKLYR 970
AVDF K+G P EM + + PD+ M + P Y+S + GKL+R
Sbjct: 1061 AVDFTKSGIPPEELEKKWRKDDETGEMIPPERAERVPDYHMGNDHSPMYVSPRLCGKLFR 1120
Query: 971 --ATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYY 1028
+D +++I E+I E S D + +DG++ ++ A Y ++ ++M Y
Sbjct: 1121 EFKAIDDVVKISEER--DEQI-EISIDPTMTIDGYDEYMQSAREDLARYNAQLRSVMENY 1177
Query: 1029 GA--------STEDEILTG---NLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWF 1077
G TE EI +G ++RNR S +D+ + + I NL + +E F
Sbjct: 1178 GIKKINDRYFQTEGEIFSGCIVDMRNRISDKDQDDMSFYNTNQLIETKVSNLFKKYREHF 1237
Query: 1078 ----------GSSCKENEHP----------------QLASAWYHVTYSPSYCKERMALLS 1111
+ C N + + A AWY Y + LS
Sbjct: 1238 FDEFDGGWQTNTECTRNGNETNILQRQCRAPTNKMMRKAVAWYKACYEEARVTRENKKLS 1297
Query: 1112 FPWIVGDILLNIK 1124
F W+ D+L ++K
Sbjct: 1298 FAWLAYDVLASVK 1310
>gi|443899804|dbj|GAC77133.1| RNA-directed RNA polymerase QDE-1 [Pseudozyma antarctica T-34]
Length = 1455
Score = 262 bits (669), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 215/640 (33%), Positives = 318/640 (49%), Gaps = 90/640 (14%)
Query: 390 YRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGI 449
Y +TP ++ GP ++ SN V++ F + S F+RV F +ED + P +S GI
Sbjct: 444 YHVTITPTRMLLDGPFMDASNRVLRMFPDFGSHFVRVAFCDEDGDRFP---VSRHDLDGI 500
Query: 450 FSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMF-ASNDEVS----AE 504
S+ + + RI L+ GI I + +E LA+S S L ++ W A D+V AE
Sbjct: 501 DSESF---VRERIGDPLKYGIAIAGRKFEALAWSGSGLGSHHCWFVTAFTDKVGKLWDAE 557
Query: 505 DVRGWMGCFNKI-RSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPD----VEVTSDG--- 556
+R +G F I R ++ AR+ Q FS++ ++ + VE+IPD ++ S+G
Sbjct: 558 RIRQALGNFRSIDRYPARLGARLSQAFSATSSSITIENDWVEIIPDELSNAQMPSNGPER 617
Query: 557 --NTYCFSDGIGKISLSF----------ARQVAQKCGLSHT-----PSAFQIRYGGYKGV 599
Y +DG+G+IS S R + ++ LS PSA Q R GG KGV
Sbjct: 618 DRKYYLLTDGVGQISKSLLDEIWHALCETRGMRREWRLSQQDPRRIPSAIQFRCGGAKGV 677
Query: 600 IAVDRN-SFRKLSLRRSMLKFES-RNRMLNVTKWSES-MPCFLNREIISLLSTLGVKDEV 656
+ ++ +K+ +R SM+KF + ++R L V S S +P LNR +I+ L LGVKD+V
Sbjct: 678 LCLNPTLKGKKMIMRESMIKFSAPKHRELEVAAHSFSPLPARLNRPLINALEDLGVKDDV 737
Query: 657 FEAMQQQQL--------------ILLGKMLINREAALDVL-QKLNGVDSKNILVKMLLQG 701
F +Q + L+G ++ A + L ++L+ V + M
Sbjct: 738 FLNLQASAVESAQEARKSFKRASQLMGSFAMSDAAEMHKLFRRLDSV------IGMRPDE 791
Query: 702 YEPN-VEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTM 760
+P+ + L ++++ L DLK + RI V +G LIG DE L GQ+F +V
Sbjct: 792 LDPDSILHRLCTIVIA---AALGDLKRKARIPV-QGCTLIGVVDEFNFLERGQIFAQVN- 846
Query: 761 TREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCI 820
+DQ D+ IV+GKV+V ++P +HPGDVRV+ AV + +
Sbjct: 847 ------DRDQ-------DEFRIVEGKVMVGRSPTIHPGDVRVVSAVKPPPGHPLLQLRNV 893
Query: 821 IFPQKGE--RPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLE 878
I K RP + SGGDLDGDI+ I D DL P TE P Y R + T E
Sbjct: 894 IVFSKSPFGRPLQSILSGGDLDGDIYTIYEDKDLFPTRTESPGQYKSVPPRSLARPCTFE 953
Query: 879 EIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAE- 937
++ FFVDY+IND +G +ST HL AD P + C+ LA LH+ AVD+ KTG
Sbjct: 954 DLADFFVDYVINDQVGLVSTFHLHIADTSPLHSLDPDCIKLAQLHAKAVDYRKTGQAVHR 1013
Query: 938 ----MPLALKPKEFPDFM-EREDKPR-YISFGVLGKLYRA 971
MP P+ PDF+ +R P Y S LGKL+RA
Sbjct: 1014 RDVPMPPFNSPR--PDFLAQRPAGPGIYSSTRALGKLFRA 1051
>gi|384499712|gb|EIE90203.1| hypothetical protein RO3G_14914 [Rhizopus delemar RA 99-880]
Length = 595
Score = 261 bits (668), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 169/486 (34%), Positives = 254/486 (52%), Gaps = 50/486 (10%)
Query: 668 LGKMLINREAALDVLQKLNGVD---SKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSD 724
+ K+L E A+ VL LN D + +++ ++ G+ +PY+ +L N L +
Sbjct: 8 IDKILARPEEAIRVL--LNNADEAGTAHMMASIIQAGFLERGDPYIKNLLNLFRVNVLKE 65
Query: 725 LKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVK 784
LK + +I VP+G L+G DETG L+ G+V+++V K ++
Sbjct: 66 LKKKAKILVPQGAFLLGVMDETGTLDEGEVYIQVWDNSHSGTMK------------QVIT 113
Query: 785 GKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIF 844
G+ V +NPC HPGDVRV+ AV L V+ ++FP KG R P+ CSGGDLDGD +
Sbjct: 114 GECAVFRNPCFHPGDVRVVTAVDRPNLSH--LVNVVVFPAKGYRDIPSMCSGGDLDGDDY 171
Query: 845 FISWDNDLIPCETE-PPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVH 903
I WD LIP + PMDYT R ++ DV + +I +FFV+Y+ ND LG I+ AHL
Sbjct: 172 TIFWDPKLIPTRKDVAPMDYTASDPRKVE-DVKIRDIQRFFVNYINNDNLGQIANAHLAT 230
Query: 904 ADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFG 963
AD A +C+ LA LHS AVDF K+G PA + L + FPDFM+++DK Y S
Sbjct: 231 ADFSEKGAMDGRCILLAQLHSEAVDFPKSGKPATLSEDLIVRTFPDFMQKKDKESYASKK 290
Query: 964 VLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNA 1023
VLG ++R SI + S+ EA YD + + G ++G A + + Y ++ A
Sbjct: 291 VLGHIFR----SIDKSDYKNYMSKLTEEAVYDTRMHLSGMAYYIGEARTLRRDYNRDLLA 346
Query: 1024 LMNYYGASTEDEILTGNL-------RNRASYLQRDNRRYGDMKDRILLSAKNL-QNEAKE 1075
LMN G TE EI++G + +++ Y Q D+ + + S K+L + E ++
Sbjct: 347 LMNQNGVQTEAEIMSGYIIKWLKKGKSKTRYEQHDSTM------KAIKSFKDLWRKEFEK 400
Query: 1076 WFGSSCKENEHP-------QLASAWYHVTYSPSYCK----ERMALLSFPWIVGDILLNIK 1124
F ++ P A+AWY+VTY PS + E+ LSFPW++ D + I
Sbjct: 401 EFMDDTQKTVDPAHRASMDAKAAAWYYVTYHPSERQRDFSEQGGFLSFPWVIHDYVCEIA 460
Query: 1125 SVNSRK 1130
N +
Sbjct: 461 KRNKHR 466
>gi|171683804|ref|XP_001906844.1| hypothetical protein [Podospora anserina S mat+]
gi|170941862|emb|CAP67515.1| unnamed protein product [Podospora anserina S mat+]
Length = 1230
Score = 261 bits (667), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 191/603 (31%), Positives = 300/603 (49%), Gaps = 64/603 (10%)
Query: 383 DHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKL---PAN 439
+ N +R ++PM+I GPELET N +++ F A+ F RV +E+ L P
Sbjct: 437 NENSTRIFRVSISPMRITLHGPELETKNRILRKFDGKANFFFRVQLCDENGQDLLFNPTI 496
Query: 440 ALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFA--- 496
+L T +YSR +IL+ GI + + Y+FL FS S LR +S+W A
Sbjct: 497 SLDT--------------VYSRFKSILRKGIAVAGRQYKFLGFSHSSLRAHSLWFSAPFY 542
Query: 497 -SNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEM--IPDVEVT 553
E + +G F IRS ++CAAR+GQ F+ + ++ + V+ IPDVE
Sbjct: 543 HEGKLQIPEHIIEQLGDFAPIRSPARCAARIGQAFTETPYSVSLVDNGVQTSEIPDVE-- 600
Query: 554 SDGNTYCFSDGIGKISLSFARQVAQKCGLSH-TPSAFQIRYGGYKGVIAVDRN-SFRKLS 611
N FSDG+G +S A + S P+ FQIR+ G KG++++D ++
Sbjct: 601 --RNGRVFSDGVGVLSPQAAEAIHDAIPESKGEPTCFQIRWAGAKGMLSLDTELEGSQIC 658
Query: 612 LRRSMLKFESRNRM-LNVTKW-SESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLG 669
+R SM KFES + L++ S+ +P LNR++I +L + F +Q++++ L
Sbjct: 659 IRPSMKKFESPDEANLDICDMASKPIPMMLNRQMIKILEDMDAPPWWFLELQRKEVNHLR 718
Query: 670 KMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHE----NQLSDL 725
+ + L + + L +L Q V+ + + L S E ++ +
Sbjct: 719 AITRTVSSTASFL-AMKDIGESIRLPHLLRQTEAMGVDYHQDLFLRSVVEMALLKEIKLI 777
Query: 726 KSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKG 785
K + RI VPKG L G DETG L GQV+V Q +H +
Sbjct: 778 KHKARIPVPKGITLFGVMDETGFLQEGQVYVSFDTM--------QGRYHEPPECQ----- 824
Query: 786 KVLVTKNPCLHPGDVRVLEAVYEMK----LEEKDYVDCIIFPQKGERPHPNECSGGDLDG 841
KV++T++P LHPGD+++ V + LE ++ C++F Q+G+R P+ SGGDLDG
Sbjct: 825 KVVITRSPALHPGDIQLAHHVIPPEGHPLLELRN---CVVFSQRGDRDLPSMLSGGDLDG 881
Query: 842 DIFFISWDNDLIP-CETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAH 900
DI+ I WD ++ + P DY + V +++ FFVD++ D LG I+T H
Sbjct: 882 DIYNIIWDEAIVSQVRSFSPADYPRLPIVELGRKVEADDMIDFFVDFISQDCLGVIATRH 941
Query: 901 LVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYI 960
++ AD P R S C+ LA LHS AVDF+KTG A+ +E P R+ +P ++
Sbjct: 942 MILADLAPQGTRDSDCVKLAELHSQAVDFSKTGR------AVNLRELPK-TPRQGRPHFL 994
Query: 961 SFG 963
+ G
Sbjct: 995 AAG 997
>gi|449550827|gb|EMD41791.1| hypothetical protein CERSUDRAFT_147107 [Ceriporiopsis subvermispora
B]
Length = 1211
Score = 261 bits (666), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 192/632 (30%), Positives = 313/632 (49%), Gaps = 68/632 (10%)
Query: 379 KRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPA 438
+RL + + C R +VTP GP E N V++ F+RV FV+E
Sbjct: 412 RRLEELDTFDCLRLIVTPTTWSLEGPFPERFNRVIRTHRDNCDSFLRVAFVDE------- 464
Query: 439 NALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMF--- 495
N L R + + I R+ +L +GI I +H+EFLA+S S LR ++VW
Sbjct: 465 NRLQYRFDREVDGSEF---IRRRVKGLLINGITIAGRHFEFLAYSQSALREHAVWFVKSF 521
Query: 496 --ASNDEVSAEDVRGWMGCFNK------IRSVSKCAARMGQLFSSSKQTLVVPVQDVEMI 547
AS V A + +G F+ I ++ AAR+ Q F+++ ++ V +++ ++
Sbjct: 522 TDASGACVDAPGIIRTLGNFHVNYDPQLIYCPARWAARVSQAFTATDASVSVEAEEIIIL 581
Query: 548 PDVEVTSDGNTYCFSDGIGKISLSFARQVAQK-CGLSHT-------PSAFQIRYGGYKGV 599
D+E D N F+DG+G IS A+ + ++ C H P AFQIR+GG KG+
Sbjct: 582 DDIE---DSNRRLFTDGVGTISAELAKAIWKELCARRHRNRRRPAYPRAFQIRFGGSKGM 638
Query: 600 IAVDRN-SFRKLSLRRSMLKFESRNRMLNVTKWSESMPC--FLNREIISLLSTLGVKDEV 656
++VD R + LRRSM+KFE+ + M+ + P +LNR +I LL LGV +V
Sbjct: 639 LSVDYTLEGRIICLRRSMIKFEAPHSMVVEVARAFDRPGKYYLNRPLIMLLEGLGVPYDV 698
Query: 657 FEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLS----- 711
F+ +Q + + + + E A +L+ +G+ S L ++L ++ VEP++
Sbjct: 699 FQKLQDDAVQHVEESRGSLETAARLLET-HGLGSSFRLTSVMLALHKLGVEPFMQDVFWR 757
Query: 712 MMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQS 771
M+ + L +LK RI VP G L+G D G L GQ+F + T
Sbjct: 758 QMMDFAVNHVLRELKHHARIPVPDGWTLVGVADVHGFLEEGQIFACIIPT---------- 807
Query: 772 FFHRVDDKTSI-VKGKVLVTKNPCLHPGDVRVLEAVYE----MKLEEKDYVDCIIFPQKG 826
D I ++G L++++P +HPGDV+V+ A+ + ++ + ++F KG
Sbjct: 808 -----DGAAPIYLEGPTLISRSPTIHPGDVQVVHAIGKPPPNSPFAKESLRNTVVFSIKG 862
Query: 827 ERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVD 886
RP P+ GGDLDGD++ ++ +L P T P Y +++ T+ ++ F +
Sbjct: 863 SRPLPSCLGGGDLDGDVYNLTTMPELRPRRTYEPASYAAAEKKLLIRPCTMADVADFVAE 922
Query: 887 YMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPA------EMPL 940
Y+I+DTLG I+ L+ AD+ + R CL LA LHS AVD+ K+G P +
Sbjct: 923 YIISDTLGIIAINWLIIADQSVEGIRDPACLLLAALHSDAVDYPKSGRPVPVENIPRLKF 982
Query: 941 ALKPK-EFPDFMEREDKPRYISFGVLGKLYRA 971
KP P+ ++ + Y S +GKL+R+
Sbjct: 983 RAKPDWNAPETLKGDAVEFYESQRAIGKLFRS 1014
>gi|449304105|gb|EMD00113.1| hypothetical protein BAUCODRAFT_119665 [Baudoinia compniacensis UAMH
10762]
Length = 1187
Score = 261 bits (666), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 219/753 (29%), Positives = 352/753 (46%), Gaps = 100/753 (13%)
Query: 390 YRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGI 449
++ ++TP Y GP E +N V++ +A F+RV F +ED S + + ++ Q I
Sbjct: 422 HKVVITPAGTYLEGPSAEPTNRVLRKYATQTDCFIRVVFQDEDGSSMHHDPRAS--QEAI 479
Query: 450 FSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFA------SNDEVSA 503
+ Y+ +L I I + + FL FS S LRN S W A + V +
Sbjct: 480 YHIRYKG--------VLDGTINIAGQGFSFLGFSHSSLRNRSCWFMAPLIDSRTRTLVLS 531
Query: 504 EDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSD 563
V +G F IR+ +KCAAR+GQ F+ + ++ V +V +P VE N FSD
Sbjct: 532 PQVIKELGDFTHIRTPAKCAARIGQCFTDTTASVSVKDWEVGKLPVVE----RNGRDFSD 587
Query: 564 GIGKISLSFARQVAQKCGLSHT--PSAFQIRYGGYKGVIAVD-RNSFRKLSLRRSMLKF- 619
G+G +S V Q G+ + P+ QIR+ G KG++++D R R+L LR +M KF
Sbjct: 588 GVGTLSRQLFEDVWQVYGMRNALKPTVLQIRFQGAKGMVSLDSRLQGRQLLLRTNMEKFV 647
Query: 620 ESRNRMLNVTKWS-ESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKML---INR 675
S++R+L + +P LNR+ + +L LG E ++Q +++ L ML +N
Sbjct: 648 GSQSRVLEICGAGFRPLPMVLNRQSVQILEDLGTPTEAVLSLQTREVQKLQCMLESAVNT 707
Query: 676 EAALDVLQKLNGVDSKNILVKMLLQG-YEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVP 734
+ L+ ++ + L+ ML Q + + +L+ + +QL D+K R RI++
Sbjct: 708 ASLLETMELTKAAKLPD-LIDMLDQARLDFRHDRFLTGIAQMAVVHQLRDIKYRGRIHIN 766
Query: 735 KGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPC 794
G L G DETG L G+V+V VT + K+ +++ +L+T++P
Sbjct: 767 DGVTLYGIMDETGYLQEGEVYV-VTEKAPDGGRKE------------LIRNNILITRSPA 813
Query: 795 LHPGDVRVLEAV-YEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI 853
+HPGD++ + AV K + ++F Q G R P++ SGGDLDGD++ I WD+ L
Sbjct: 814 MHPGDIQQVNAVSVPADSPLKHLSNVVVFSQHGARDLPSQLSGGDLDGDLYNIIWDSTLW 873
Query: 854 PCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARS 913
P + P DY + +D VT +++ FFV +M + LG I + H+ AD+ P
Sbjct: 874 PTKFATPADYPRVKPVELDRIVTGKDMSDFFVTFMETNQLGMICSIHMQLADQRPMGTWD 933
Query: 914 SKCLHLATLHSMAVDFAKTGAPAEMPLALK-PKEFPDFMEREDKPR-------------- 958
C+ LA + S AVD++KTG P +M K + PDFM PR
Sbjct: 934 PDCIKLAAMASTAVDYSKTGIPVDMKQCPKYDRCRPDFM--APSPRILLSEQGYLDLEDE 991
Query: 959 -------YISFGVLGKLYRA----TLDSIMQIRSNAIWSEKIAEASYDHDL--EVDGFEA 1005
Y S LG+LYRA + + +Q + A+ + +S + L + +
Sbjct: 992 LSRPYRYYKSQKALGQLYRAIDERSFIADLQAQQRAVTATHERSSSPLNSLLHYMKKWAN 1051
Query: 1006 FLGVAESH--------KEMYEEEMNALMNYYGAS-----TEDEILTGNLRNRASYLQRDN 1052
G+ SH + YEE + M +Y +E E+ G + R S Q
Sbjct: 1052 QYGIGYSHQTKLARDIRASYEESLLDAMYHYSPVAHSVLSEQEVYAGIILGRQSGAQNK- 1110
Query: 1053 RRYGDMKDRILLSAKNLQNEAKEWFGSSCKENE 1085
S + L E +E FGS + E
Sbjct: 1111 ------------SLRELAKEMRERFGSVVEYTE 1131
>gi|154272513|ref|XP_001537109.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150409096|gb|EDN04552.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1209
Score = 260 bits (664), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 232/817 (28%), Positives = 369/817 (45%), Gaps = 132/817 (16%)
Query: 299 NLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSIC------ 352
N+ + V FQL LV N +S A + ++ + L +E +V++ L +L S
Sbjct: 320 NMPYRVRFQLQKLVWNGDISPAKAISFASRVRATLVIEDLDIVVRALMRLSSDVKWPSPD 379
Query: 353 -----YDPVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELE 407
D + V+ + L + ++ R ++ N +S +RA +TP Y GP E
Sbjct: 380 VEASEVDVPALVEVFKNALESTAREREMTRSNRPMNPNHISIHRAQITPCGTYLDGPHAE 439
Query: 408 TSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQ 467
T N V+++++ + F+RV FV+E P + IF SR T+L+
Sbjct: 440 TKNRVLRHYSSHVDHFLRVEFVDETGD--PVRYDPRASIDMIFE--------SRFKTVLK 489
Query: 468 DGIVIGDKHYEFLAFSASQLRNNSVWMFAS--NDEV--SAEDVRGWMGCFNKIRSVSKCA 523
GI I + +EFL FS S LR+ + W A D + +A + +G F+ I+S +K A
Sbjct: 490 SGINIAGRKFEFLGFSHSSLRSQTCWFVAPFYKDRILYNASTIIQNLGRFDHIQSPAKQA 549
Query: 524 ARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLS 583
AR+GQ FS + ++ + + + + DVE N FSDG+G
Sbjct: 550 ARIGQTFSDTLTSIPISDKYISIGKDVE----RNGRVFSDGVGA---------------- 589
Query: 584 HTPSAFQIRYGGYKGVIAVD-RNSFRKLSLRRSMLKFESRN--RMLNVT---KWSESMPC 637
KG+I++D R + L LR SM+KF N N+ + +P
Sbjct: 590 -------------KGMISLDSRKKGKSLVLRPSMIKFHLPNSYNAFNIEICGSGLKPLPF 636
Query: 638 FLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNI--LV 695
FLN ++I +L LGV + VF +Q ++ L + A L+ N S + L+
Sbjct: 637 FLNAQMIKILEDLGVDESVFLRLQADEISRLRATATSTAKAARFLEDTNIAKSVGLPWLI 696
Query: 696 KMLLQ-GYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQV 754
+L G + + +L ++ +L DLK R RI VP L G DETGIL G+V
Sbjct: 697 NVLEGFGLRHSNDEFLRRVMELSVLIKLRDLKYRARIRVPNAVTLFGIMDETGILKEGEV 756
Query: 755 FVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAV-YEMKLEE 813
F L K + +V +V+VT++P +HPGDV++ AV
Sbjct: 757 FC------TSLSDKGV--------REVLVNPRVVVTRSPAMHPGDVQIARAVDVPADSPL 802
Query: 814 KDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDH 873
+ +CI F Q G R P+ SGGDLDGD++ + +DN L+P P +Y + +++
Sbjct: 803 RQLHNCIAFSQHGHRDLPSMLSGGDLDGDLYNVIFDNTLLPKRIARPAEYPRVQEKVLGR 862
Query: 874 DVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTG 933
V E+I FFV +M D LG I+T H AD+ P +CL LA LHS AVDF+KTG
Sbjct: 863 TVVREDIIDFFVTFMQQDQLGRIATIHQALADQRPLGTFDPECLLLAELHSTAVDFSKTG 922
Query: 934 APAEMPLALK-PKEFPDFMEREDKPR-------------------------------YIS 961
P ++ K P PDF + R Y S
Sbjct: 923 VPVDLARIPKFPSCRPDFQAPSPRIRIAENLSLLEGDMDAVQDGGDEDDDERPAVRFYKS 982
Query: 962 FGVLGKLYRATLD--------SIMQIRSNAIWSEKIAEASYDH-DLEVDGF--EAFLGVA 1010
+LGKLYR+ + S+M++ S A+ + + ++ E +GF + + A
Sbjct: 983 ENILGKLYRSIDEVKFLQHRQSVMELPS-AMCAPSVLRGVWEFVQREAEGFLWDHHIEHA 1041
Query: 1011 ESHKEMYEEEMNALMNYYGAS------TEDEILTGNL 1041
+++YE+ + +M + ++ TE E+ G +
Sbjct: 1042 LDIRQIYEDNLLEIMARFSSTPWKSSITEYEVFVGTI 1078
>gi|398389633|ref|XP_003848277.1| RNA-directed RNA polymerase [Zymoseptoria tritici IPO323]
gi|339468152|gb|EGP83253.1| RNA-directed RNA polymerase [Zymoseptoria tritici IPO323]
Length = 1234
Score = 259 bits (662), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 189/593 (31%), Positives = 297/593 (50%), Gaps = 59/593 (9%)
Query: 390 YRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGI 449
++ +V P + GPE E +N V++ +AKY F+RV F +ED + + + T + R
Sbjct: 424 HKVVVMPTGLRLEGPEPEPTNRVLRRYAKYTDFFLRVEFRDEDGATVRYDP-RTDLHR-- 480
Query: 450 FSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFAS---NDEVS-AED 505
+ R T+L I+I + + FL FS S LR+ S W A N + A+
Sbjct: 481 -------VYHGRFKTVLDSSILISGRAFSFLGFSHSSLRSQSCWFMAPFVFNGSLRYADH 533
Query: 506 VRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGI 565
V +G F IR+ +KCAAR+GQ F+ + ++ + + V + DVE N FSDG+
Sbjct: 534 VLQDLGEFKMIRTPAKCAARIGQNFTDTNTSVELRPEQVYWLNDVE----RNGRTFSDGV 589
Query: 566 GKISLSFARQVAQKCGLSH--TPSAFQIRYGGYKGVIAVD-RNSFRKLSLRRSMLKFESR 622
G IS+ + V + G P+ QIR+ G KG++++D R + L+LR+SM KF++
Sbjct: 590 GIISMELLQSVWRVYGTRRLLKPTILQIRFQGCKGMVSLDTRLRGKCLALRKSMRKFQTE 649
Query: 623 NRMLNVTKWS--------ESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKML-- 672
T W +P LNR+ + LG+ VF +QQ+ + L +M
Sbjct: 650 ------TTWDLEICGAAFRPLPMILNRQFTKIFEDLGIPLSVFMDLQQKSVDKLRRMTHS 703
Query: 673 -INREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRI 731
IN LD + +++ + G + +P+L ++ ++L D+K R RI
Sbjct: 704 AINTANFLDETECTKAARVPSLIRYLGQMGLDYRHDPFLYNVVEMSVVSKLRDIKYRGRI 763
Query: 732 YVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTK 791
+ G L G DETG+L ++FV VT + ++ +V+ V+VT+
Sbjct: 764 PIDDGVTLYGIMDETGVLKANEIFV-VTEKAP------------LGGRSVLVRNNVIVTR 810
Query: 792 NPCLHPGDVRVLEAV-YEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDN 850
+P +HPGDV+++ AV + + ++F Q G+R P+ SGGDLDGDI+ + W
Sbjct: 811 SPAMHPGDVQIVNAVDVPQGSPLRQLSNVVVFSQHGDRDLPSMLSGGDLDGDIYNVIWLP 870
Query: 851 DLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDK 910
L+P T DY + +D DV +++ FFV +M +D LG I TAHL AD+
Sbjct: 871 QLVPEVTYDAADYPKVPTEELDRDVNRKDMSDFFVKFMESDQLGMICTAHLQIADQRERG 930
Query: 911 ARSSKCLHLATLHSMAVDFAKTGAP---AEMPLALKPKEFPDFMEREDKPRYI 960
C+ L+ + S AVDF+KTG P A+MP + K PDFM PR I
Sbjct: 931 VLDPDCIKLSAMASTAVDFSKTGIPVNLAQMPRYDRCK--PDFM--APSPRVI 979
>gi|403414238|emb|CCM00938.1| predicted protein [Fibroporia radiculosa]
Length = 1215
Score = 259 bits (661), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 198/678 (29%), Positives = 334/678 (49%), Gaps = 84/678 (12%)
Query: 387 MSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQ 446
+C+ +VTP +Y GP E SN +++ + F+RV+FVEE N L
Sbjct: 415 FNCFHVVVTPTTMYLEGPFPERSNRIMRMYMANQDSFLRVSFVEE-------NRLMYRFD 467
Query: 447 RGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWM---FASND--EV 501
R + ++ + + R+ +L +G+ I +H++FLA+S S L+ ++VW F D ++
Sbjct: 468 RELDARDF---VNRRVKHLLLNGLTIAGRHFDFLAYSQSALKEHAVWFVKPFNHTDRRQI 524
Query: 502 SAEDVRGWMGCFNK-------IRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTS 554
A + +G F+ I ++ AAR+ Q F+++ ++ V ++V IPD+ +
Sbjct: 525 DAATIISGLGSFHDLAFDERLIYCPARYAARISQAFTATDSSVSVEAEEVVPIPDIWDAT 584
Query: 555 DGNTYCFSDGIGKISLSFARQV------AQKCGLSHT-PSAFQIRYGGYKGVIAVD-RNS 606
+TY F+DG+G IS A+ + QK T P A+Q+R+ G KG+++VD R
Sbjct: 585 --HTYSFTDGVGTISPDLAQAIWDELRAKQKRSRHRTKPRAYQVRFMGSKGMLSVDYRLE 642
Query: 607 FRKLSLRRSMLKFESRNRMLNVTKWSESMPC--FLNREIISLLSTLGVKDEVFEAMQQQQ 664
R + LR SM+KF++ N + + P +LNR +I LL LGV F+A+Q
Sbjct: 643 NRLVCLRESMIKFDAPNSLFIEIARAFDKPGRYYLNRPLIMLLEGLGVPYSTFQALQDAA 702
Query: 665 LILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEP-----YLSMMLLSHHE 719
+ + + ++ +L+ +G+ + L +L + + P + M+
Sbjct: 703 VQNAQDSVESLSSSARLLEA-HGLGTSFRLTSTMLSLHRLGLGPLHEDIFWQQMMDFAVN 761
Query: 720 NQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDK 779
+ L +LK RI VP G L+G D G LN G++F V H D
Sbjct: 762 HVLRELKHHARIPVPDGWTLVGVADVHGFLNEGEIFACV---------------HPQDSS 806
Query: 780 TSI-VKGKVLVTKNPCLHPGDVRVLEAVYE----MKLEEKDYVDCIIFPQKGERPHPNEC 834
I ++G L++++P +HPGDV+V+ A+ E++ + ++F KG RP P+
Sbjct: 807 VPIYLEGPTLISRSPTIHPGDVQVVHAIGPPPPGSPFEKEPLPNTVVFSIKGGRPLPSYL 866
Query: 835 SGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLG 894
GGDLDGD++ ++ + P T PP Y + +DH T+ ++ +F +Y+I+DTLG
Sbjct: 867 GGGDLDGDVYNLTTMPSMRPRRTYPPARYDPAPKKFVDHPSTMADVAEFVAEYIISDTLG 926
Query: 895 AISTAHLVHADR------DPDKARSSKCLHLATLHSMAVDFAKTGAPA---EMPLALKPK 945
I+ L+ AD+ DPD CL LA LHS AVD+ K+G P ++P LK K
Sbjct: 927 IIAINWLITADQSGLGIFDPD------CLKLAQLHSDAVDYPKSGIPVALDQIP-RLKRK 979
Query: 946 EFPDF-----MEREDKPRYISFGVLGKLYRAT-LDSIMQIRSNAIWSEKIAEASYDHDLE 999
PD+ + +E Y S +G L+RA L ++ ++ + + + S +L
Sbjct: 980 SKPDWNAPETITKESTNWYESTRAIGHLFRAIELPALQTVKRASRYQRR--HLSNGDELN 1037
Query: 1000 VDGFEAFLGVAESHKEMY 1017
+D A E H+ Y
Sbjct: 1038 LDDILAEFRSVEPHRADY 1055
>gi|429963046|gb|ELA42590.1| hypothetical protein VICG_00342 [Vittaforma corneae ATCC 50505]
Length = 2092
Score = 258 bits (660), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 200/644 (31%), Positives = 308/644 (47%), Gaps = 106/644 (16%)
Query: 392 ALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFS 451
A++TP+ + SN V+ NF F +V EE+ L+ +
Sbjct: 839 AILTPLSVIFNYETTSESNRVLNNFD--PDKFCKVVIREENGKDRFMADLAKNTD----- 891
Query: 452 KPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDE----VSAEDVR 507
+Y ++ +G VIG + Y FLA + SQL+ + W + + A+ ++
Sbjct: 892 -----GVYDYFRRVMLNGFVIGLRKYFFLAMTTSQLKIHGSWFITPYEHDDMVIGADYIK 946
Query: 508 GWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGK 567
W+G F+KI+++ K A R+G SS+ T P D + D++ N+YCF+DGIG
Sbjct: 947 SWIGNFHKIKNIGKYAIRIGLALSSTTPT--YPFNDFVEVDDIQ----KNSYCFTDGIGL 1000
Query: 568 ISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDR----------------------- 604
I+ +A ++ GL PSAFQIR+GGYKGVIAV
Sbjct: 1001 ITKKWAHNISNILGLGFIPSAFQIRFGGYKGVIAVHPWMDEQKNFEEWLTVNSNIVRGYG 1060
Query: 605 -------------------NSFRK------------LSLRRSMLKFESRNRMLNVTKWSE 633
NSF + L +R+SM KF+S R L + S+
Sbjct: 1061 KYSNINSLLYSNTSSNDAVNSFHQIVASFKQLGTPDLIVRKSMNKFDSSYRTLEIIAVSK 1120
Query: 634 SMPCFLNREIISLLSTLGVKDEVFEAMQQQQLI-LLGKMLINREAALDVLQKLNGVDSKN 692
S +LNR+II +L LGV ++F +Q + + +L K+ +++ L + + +N +
Sbjct: 1121 SSSFYLNRQIILILEGLGVPIQIFIDLQDKYIQNMLSKL--SQDFTLFIKKYVNTTMN-- 1176
Query: 693 ILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYG 752
+ L Y P LS + +L ++ +I + +GR IG DE GIL
Sbjct: 1177 --ISTDLPFYRKLQSPILSKVF--------EELNTKSKILIGQGRSAIGVLDELGILEED 1226
Query: 753 QVFVRVTMTREELESKDQSFFHRVDDKTSIVKG-KVLVTKNPCLHPGDVRVLEAVYEMKL 811
Q+F M ++++ D+S + D + IV +V KNP +HPGD+RV++ V KL
Sbjct: 1227 QIFC---MFQKDV---DESMENLKDYGSYIVPNCYCIVAKNPVMHPGDIRVVKCVDAPKL 1280
Query: 812 EEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIM 871
V I+F +KG RP N+CSG DLDGDIF +SW LIP T P +Y + I
Sbjct: 1281 HYLKNV--IVFSKKGSRPIFNQCSGSDLDGDIFLVSWCKALIPKATFKPYNYINTCALIK 1338
Query: 872 DHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAK 931
D V L +I F++ +M LG I+ ++L +D+ + K L L+ + + +D+ K
Sbjct: 1339 DK-VLLSDIVNFYIRHMKFYQLGQIAHSYLAMSDKFS--IFNEKSLRLSDIFNKNIDYVK 1395
Query: 932 TGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLY-RATLD 974
TG +P L P E+PDFMER P Y S +G LY R+T D
Sbjct: 1396 TGHITSIPEDLIPTEYPDFMERS--PSYYSTKAIGHLYRRSTFD 1437
>gi|295668891|ref|XP_002794994.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226285687|gb|EEH41253.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 1142
Score = 258 bits (659), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 224/737 (30%), Positives = 331/737 (44%), Gaps = 135/737 (18%)
Query: 297 GFNLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKL-------- 348
G +L + V+FQL LV N +S V A + ++ L +V+Q L KL
Sbjct: 315 GGDLPYRVMFQLQKLVWNGAISPVNAISFAYRVEKELVDADLDVVVQALDKLERDIQWSS 374
Query: 349 ---KSICYDPVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPE 405
++ D V+ +K + L + LS R I N + +RA VTP IY GP+
Sbjct: 375 PDVQASEVDVVALMKLFANALEIVVREKALSRSNRPIHPNNILIHRAQVTPCGIYLYGPQ 434
Query: 406 LETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTI 465
LET N V++ + F+RV FV+E S P S + IF SR +
Sbjct: 435 LETKNRVLRIYEANVDHFLRVEFVDE--SGDPVRYDSRASVDAIFQ--------SRFKGV 484
Query: 466 LQDGIVIGDKHYEFLAFSASQLRNNSVWMFA----SNDEVSAEDVRGWMGCFNKIRSVSK 521
L++GI I + +EFL FS S LR+ + W A +A + +G F+ I S +K
Sbjct: 485 LKEGITIAGRKFEFLGFSHSSLRSQTCWFVAPFVSGGTLYNATVIIQNLGRFDHIHSPAK 544
Query: 522 CAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCG 581
AAR+GQ FS + ++ + + + DVE N FSDG+G IS F + K
Sbjct: 545 QAARIGQTFSDTLTSIPISFDMLSVGEDVE----RNGRIFSDGVGTIS-PFLIKSMVKFP 599
Query: 582 LSHTPSAFQIRYGGYKGVIAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNR 641
+ T I G S LK ++P FLN
Sbjct: 600 VPETVGGLNIELCG-------------------SGLK---------------ALPFFLNA 625
Query: 642 EIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQG 701
++I +L LGV+ F +Q ++ L R A Q ++ +I + L
Sbjct: 626 QLIKILEDLGVEQSAFLKLQADEIERL------RATAPSTAQAARFLEDTHIAKSIGL-- 677
Query: 702 YEPNVEPYLSMMLLSHHENQ-------------LSDLKSRCRIYVPKGRLLIGCFDETGI 748
P + L LSH +++ L DLK R RI VP L G DETGI
Sbjct: 678 --PWLISILEGFRLSHTDDEFLRRVMELAVLIKLRDLKYRARIRVPNAVTLFGIMDETGI 735
Query: 749 LNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAV-Y 807
L G++F VT++ + HR +V+ +V+VT++P +HPGDV+V +AV
Sbjct: 736 LKEGEIFC-VTLSEDG---------HR----EVLVRPRVVVTRSPAMHPGDVQVAKAVDV 781
Query: 808 EMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRR 867
+ +CI F Q G+R P+ SGGDLDGD++ + +D LIP T PP +Y
Sbjct: 782 PADSPLRQLHNCIAFSQYGDRDLPSMLSGGDLDGDLYNVIYDETLIPKITVPPAEYPRVE 841
Query: 868 SRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAV 927
++++ V ++I FFV +M D LG I+T H AD+ +CL LA LHS AV
Sbjct: 842 EKVLNRPVVTDDIIDFFVTFMQQDQLGRIATIHQAIADQRDRGTFDEQCLLLAELHSTAV 901
Query: 928 DFAKTGAPAEMPLALK-PKEFPDFM-----------------------------EREDKP 957
DF+K+G P ++ K P+ PDF E +++P
Sbjct: 902 DFSKSGVPVDLARIPKFPRYRPDFQAHGPRVRIAESLSLFEEDEETTAQDLHDDEDDERP 961
Query: 958 R---YISFGVLGKLYRA 971
Y S+ +LGKLYR+
Sbjct: 962 PTRFYKSYKILGKLYRS 978
>gi|33331167|gb|AAQ10792.1| RNA-directed RNA polymerase-like protein [Branchiostoma floridae]
Length = 1005
Score = 258 bits (658), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 154/413 (37%), Positives = 237/413 (57%), Gaps = 39/413 (9%)
Query: 733 VPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKN 792
V GR+++G DETG L YGQVF++ +RE + + H +G+V VTKN
Sbjct: 600 VTSGRIMMGTMDETGKLQYGQVFIQ--YSREVDKPQADKVVH---------QGQVTVTKN 648
Query: 793 PCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDL 852
P HPGD+R AV +L + VDCI+FP +G RPHP+E SG DLDGD++F++W L
Sbjct: 649 PYFHPGDMRKFTAVDVPEL--RHMVDCIVFPSRGPRPHPDEMSGSDLDGDMYFVTWREGL 706
Query: 853 I-PCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKA 911
I P E P MD+T + R++ V ++ +FF +Y+ ++ LG I+ AHLVHAD++
Sbjct: 707 ILPRENRPAMDFTAQPKRVLHRPVQESDMIEFFAEYIGSNQLGLIANAHLVHADKEDQGI 766
Query: 912 RSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRA 971
S KC+ LA LHS AVD KTG E+ L+P+ +PDFM + DKP+Y S ++G+L+R
Sbjct: 767 FSQKCIDLAQLHSDAVDAPKTGQCPELKGDLRPEVYPDFMMKSDKPQYRSERIIGRLFRK 826
Query: 972 T--LDSIMQIRSNAIWSEKIA--EASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNY 1027
LDS Q RS ++ I + DHDL +GF++++ A++ +Y M ++M+
Sbjct: 827 CQELDSANQ-RSG---TDDIVYHTSRIDHDLVREGFDSYIEDAQTQLNIYNNMMMSIMSL 882
Query: 1028 YGASTEDEILTG---NLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWF------- 1077
YG ++E E+++G ++ R L+ N R+ ++ + + K L + + F
Sbjct: 883 YGITSEGEVVSGCILKVKQRLGLLK--NERF-EVAEYVRARFKTLWRKTRAEFFKQFDVE 939
Query: 1078 --GSSCKENEHPQLASAWYHVTYSPSY--CKERMALLSFPWIVGDILLNIKSV 1126
++ E + ASAWY VTYS + LLSFPW+V D+L ++K +
Sbjct: 940 ELSEERRKEEQLKKASAWYMVTYSDANKPLDPSPKLLSFPWVVYDVLASLKKI 992
Score = 180 bits (457), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 112/287 (39%), Positives = 168/287 (58%), Gaps = 29/287 (10%)
Query: 354 DPVSFVKTQLHVLG----RNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETS 409
DP++ + LH L +N +I + + L DH V + + +VTP ++ L PE
Sbjct: 333 DPIA-TASALHQLADTELKNASTIDQNHTEDLPDHYVYA-RKVVVTPTQMLFLKPEPIVE 390
Query: 410 NYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTK-IYSRILTILQD 468
N VV+ + +F+RV F +ED+SKL + P + + SR+ +L+
Sbjct: 391 NRVVREYG--VDNFIRVAFRDEDFSKLAV------------TNPNSIRCVTSRVKDVLER 436
Query: 469 GIVIGDKHYEFLAFSASQLRNNSVWMFASNDEV--SAEDVRGWMGCFNKIRSVSKCAARM 526
GI IG++H+++L S SQ+R + WM+A+ D+ S D+RGWMG + R V+ +R+
Sbjct: 437 GIRIGERHFKYLGSSNSQMREHGCWMYAAVDKTTTSTSDIRGWMGDLSHERCVATYVSRL 496
Query: 527 GQLFSSSKQTLVVPVQD--VEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSH 584
GQ FSSS+ + V V+D VE+I DVE +S T+ FSDGIGKIS+ A++VA G+S
Sbjct: 497 GQFFSSSRNAVSVSVEDRSVELIADVETSS--GTHTFSDGIGKISVPLAKKVAAALGVSP 554
Query: 585 TPSAFQIRYGGYKGVIAVDRN--SFRKLSLRRSMLKFESRNRMLNVT 629
PSAFQIRY G KGV+A D + ++ +R SM KFES ++ L VT
Sbjct: 555 VPSAFQIRYAGCKGVLAQDPTLGNTDRIQIRGSMKKFESEHKTLEVT 601
>gi|402590834|gb|EJW84764.1| RNA-dependent RNA polymerase, partial [Wuchereria bancrofti]
Length = 1136
Score = 256 bits (655), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 224/785 (28%), Positives = 369/785 (47%), Gaps = 104/785 (13%)
Query: 405 ELETSNYVVKNFAK-YASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRIL 463
E+ +N V+++F + YA +R F +++ +L + RG + I I
Sbjct: 78 EVMMTNRVIRHFGEEYA---LRCVFRDDNGQRL----VPKEFTRGRSLQDQSLIIPDLIY 130
Query: 464 TILQDGIVIGDKHYEFLAFSASQLRNNSVWMFAS---NDEV------SAEDVRGWMGCFN 514
L G+ I +HY+FLA+S SQ+R+ +M++ NDEV + ED+R WMG F
Sbjct: 131 RTLGTGLHIASRHYQFLAWSNSQMRDGGCYMYSDATVNDEVHGEMVYNVEDIRRWMGDFT 190
Query: 515 KIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDV----EVTSDGNTYCFSDGIGKISL 570
++V K +RMGQ F+ ++ T+++ D ++ D+ G + FSDG+G+IS
Sbjct: 191 ASKNVPKLMSRMGQCFTQAQPTIMLKKDDWKVEDDILGGIVHPETGEVFNFSDGVGRISK 250
Query: 571 SFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSFRKLSLRRSMLKFESRNRMLNVTK 630
+A ++A+ GL TPS +Q+R+ G+KGV+ +D L R + V K
Sbjct: 251 KYADRIAKTLGLCPTPSCYQVRFKGFKGVLCID-----PLLDELDQANIVFRKTEVEVVK 305
Query: 631 WSESMPCFLNREIISLLSTLGVKD---------EVFEAMQQQQLILLGKMLINREAALDV 681
+S P LNR +I +L + K ++ + +L L M+ + A +
Sbjct: 306 YSMPSPVCLNRPLIMILDQVSEKQGRHLHKKVCNRIHSLLELELDKLAAMMFDENIATEE 365
Query: 682 LQKL------------NGVDSKN--ILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKS 727
L NG+ N +L+ + N+ +L++ S+ + +
Sbjct: 366 LSSRLSLPIDFHQLHSNGITFTNEPFFRSLLIAVHRYNISWFLTLYEYSNIATGIIFRIA 425
Query: 728 RCRI--YVP--KGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIV 783
+I ++P GR + G D+TG+L YGQVF++ + S V K +
Sbjct: 426 SKQIQNFLPCSMGRTMYGVIDDTGLLQYGQVFIQYS-----------SSMQYVLTKKIVY 474
Query: 784 KGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDI 843
G V+VTKNPC GDVR+ EAVY+ L D I+FP+ G RPH +E +G DLDGD
Sbjct: 475 TGSVMVTKNPCHVAGDVRMFEAVYQDALLH--LCDVIVFPRYGPRPHSDEMAGSDLDGDE 532
Query: 844 FFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVH 903
+ + +D +L E M + T ++ FF+ Y+ D++G +S AHL+
Sbjct: 533 YTVIFDKELFFENNERAMFFPKSIPSECGTPPTTGDMIDFFLKYLSQDSIGRMSNAHLII 592
Query: 904 ADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKE-FPDFMEREDKPRYISF 962
D D AR KC ++AVDF KTG A+ L+ + E PD+M+ +P Y S
Sbjct: 593 EICD-DIAR--KC-------AVAVDFPKTGVAAKPLLSHEQCEVMPDYMQNMIRPSYRSK 642
Query: 963 GVLGKLYRAT--LDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEE 1020
+LG+LYR ++ I +I +++ YD L + E + + ++ Y
Sbjct: 643 RLLGELYRKARRVEDISEIVQGTKFADYCDPQLYDESLFHEQSE-LIQESLRLRDEYHSR 701
Query: 1021 MNALMNYYGASTEDEILTGNLRN--RASYLQRDNRRYGDMKDRI--LLSAKNLQNEAKEW 1076
+ LM+ YG S E +++G+ R +++D+ + D+I L ++ +E+
Sbjct: 702 IQQLMDEYGISDEASVISGHSMTIKRIIEMEKDDYSFYH-SDKIVELRYSRIFSYFRREF 760
Query: 1077 FGSSCKENEHPQL-----------------ASAWYHVTYSPSYCKERMALLSFPWIVGDI 1119
F E++ + A AWY VTY+ ++ SFPWIV DI
Sbjct: 761 FKEFGGESDFLTVDAFGKREMRWNMALITKAKAWYAVTYTSAFRSSEFR--SFPWIVWDI 818
Query: 1120 LLNIK 1124
LL IK
Sbjct: 819 LLIIK 823
>gi|384495057|gb|EIE85548.1| hypothetical protein RO3G_10258 [Rhizopus delemar RA 99-880]
Length = 1125
Score = 256 bits (655), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 196/767 (25%), Positives = 342/767 (44%), Gaps = 98/767 (12%)
Query: 391 RALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIF 450
+ L+TP +Y L P L+ N++ F +Y+ F+ + F +E+ I
Sbjct: 371 KVLITPTSVYPLQPILQKMNHLQYQFQRYSDRFLLIQFTDEELGP-------------II 417
Query: 451 SKPY---RTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVR 507
P+ K+Y+RI +L+ G+++ ++YEFL S LR++S W FA DE++ +D+
Sbjct: 418 PSPHPNQNDKLYNRIFKVLKRGLMLSGRYYEFLCSSLDDLRDHSCWFFAPTDELNRDDII 477
Query: 508 GWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGK 567
W+G F +I V K +GQ+ + +L + ++VE I D E N +S GK
Sbjct: 478 YWLGDFQEISCVPKYIQSVGQVMAPRLTSLEIKPKEVEEIDDYE----HNGIIYSSECGK 533
Query: 568 ISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRN-SFRKLSLRRSMLKFESRNRML 626
+S AR+++ GL +TP+ + G +G++ + RK+ LR + F + L
Sbjct: 534 MSPQVAREISSLLGLKYTPNVVKFNLAGARGILMLSNYLQKRKIQLRTGQIHFNTERLTL 593
Query: 627 NVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQ---QQLILLGKMLINREAALDVLQ 683
+ K S+ +L+R I+LL+ LG+ VF+ + + Q+ ++ G +E L+ L
Sbjct: 594 EINKISKRERAYLDRYSITLLTGLGIHPVVFQQITEGVLQEYLMGGP---QKENFLNHLM 650
Query: 684 KLNGVDS-KNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGC 742
D ++L G+ +P ++ ++L+ L ++K +IY+ G
Sbjct: 651 DEYYSDHFAKCFNRVLCSGFLERSDPLITNLVLAFQNKVLDEIKGNTKIYIQDGARAFAV 710
Query: 743 FDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRV 802
DETG L +VF + + + +D + +++ GK L+ +N +P DV +
Sbjct: 711 MDETGSLGENEVFFQTSTSA------------GLDSELNVIIGKCLIFRNSSCNPNDVMI 758
Query: 803 LEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMD 862
++AV KL + Y + +I+ R N CS D D +N+ P
Sbjct: 759 VKAVDSPKL--RSYTNVLIYSAVSSRHLLNICSHDDAD--------ENNFTP-------- 800
Query: 863 YTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATL 922
+ ++ KF V Y+ D I A + ADR L+ A
Sbjct: 801 ------------IKFGDVSKFIVKYISEDQTKLIKDAWVASADRHSTSIYHGNALYFAQQ 848
Query: 923 HSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSN 982
S+ + +AKTG L PDFME++ Y S LG ++R + I
Sbjct: 849 LSIMIAYAKTGISVPTSEELYEYPIPDFMEQDSLMSYQSKKPLGYIHRI----VKTIEKR 904
Query: 983 AIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLR 1042
S + YD L V+G F+ A K Y+ + LM YG +E E ++G +
Sbjct: 905 PYVSNR---CEYDTRLYVEGMHKFILDARKTKMRYDNSLRLLMGEYGICSEIEFISGCIV 961
Query: 1043 NRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSCKENEHPQL------------A 1090
+ Y +++ ++ +I ++ +NE K++F + + L A
Sbjct: 962 HFPKYTSESDKK--ELTQKIKMAYIQFKNEWKKYFEFEFYKEDVKHLSEDELNCYVEAKA 1019
Query: 1091 SAWYHVTYSPSYCKERMA-------LLSFPWIVGDILLNIKSVNSRK 1130
+AWY+VTY P+ KE LSFPW++ D ++ I S NS +
Sbjct: 1020 AAWYYVTYHPAENKEYQKNTEVLSRCLSFPWVIDDYIVYIASKNSER 1066
>gi|66802840|ref|XP_635263.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
gi|60463423|gb|EAL61608.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
Length = 2403
Score = 256 bits (654), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 215/759 (28%), Positives = 364/759 (47%), Gaps = 98/759 (12%)
Query: 392 ALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFS 451
+TP + + P L+ S V+ F +S+F+ V V E L +G+ +
Sbjct: 1211 VFITPSRTIFIQPTLQRSCRAVRKFG--SSNFIMVKIVNESLEPL----------QGVNN 1258
Query: 452 K-PYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWM 510
K P +RI IL+ GI++G K Y + S SQLR S W F SN ++ V+ W
Sbjct: 1259 KHPLHE---NRIKPILEGGILVGGKIYSYAGNSNSQLREYSSW-FVSN-QIGTHTVKIWS 1313
Query: 511 GC--FNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKI 568
G + +R +C +G +FS++ T+ +P + I D+ NT+ F++G G+I
Sbjct: 1314 GIEHVDNVRKFFRC---IGLMFSTTIPTVTLPQNRIYRIQDIT----RNTHVFTEGCGEI 1366
Query: 569 SLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSF--RKLSLRRSMLKFE-----S 621
A+ + + + A+Q+R GG KG++ V+ + + +R SM+KF
Sbjct: 1367 GPELAKHLNENYNFRPSTCAYQVRIGGNKGMLVVNNQAPDPSGIYIRPSMVKFNPIVCGD 1426
Query: 622 RNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDV 681
+R L + S + C LNR++ISLLSTLG +D VF A+Q L + +++ + A
Sbjct: 1427 EHRTLEICSVSTTSRCKLNRQVISLLSTLGTQDNVFFALQDHYLNQVAQIVNDTNA---- 1482
Query: 682 LQKLNGVDSKNILVKMLLQGYEPNV--EPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLL 739
SK +V+ E + +PY+ +L+S ++ ++ ++ +C I + R+L
Sbjct: 1483 --------SKQAIVEFFPDITEGELYQDPYIRRILISLYKLKMERIQQKCHIEIKDSRML 1534
Query: 740 IGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGD 799
+G D T L VFV++ E+ + + +++G V+V KNPC HPGD
Sbjct: 1535 LGVCDPTNSLPPNTVFVQLEEEDEDDDDGRKY--------EKVIEGLVMVIKNPCTHPGD 1586
Query: 800 VRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEP 859
VR L+AV ++L + + ++F KG+ P+ E SG DLDGD +F +D LI ++
Sbjct: 1587 VRYLKAVDNLRL--RHLRNVLVFSTKGDVPNFKEISGSDLDGDRYFFCYDKSLIGNRSKS 1644
Query: 860 PMDYTG--------RRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKA 911
Y G +++ + + L ++ V+ LG + +HL A D A
Sbjct: 1645 ETAYLGDETVSNNDKKANVFNDPFALSSMYSTNVE---RQELGKMYNSHL--AISDLFGA 1699
Query: 912 RSSKCLHLATLHSMAVDFAKTG----APAEMPLALKPKEFPDFMEREDKPR--YISFGVL 965
+ ++ +D+ KTG P E + LK K +P +M+RE+ R Y S ++
Sbjct: 1700 NHEFSIQISKECFKEIDYPKTGIHGTIPKEANVWLKTKGYPHYMQRENSTRVYYQSKTIM 1759
Query: 966 GKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALM 1025
GK+Y D I Q+ + + S D VD +E +L A+ Y+ ++++L+
Sbjct: 1760 GKMY----DQIDQL---VYIGDFLPNISLDKSNLVDDYEIYLNSAKILYSQYKLQVHSLL 1812
Query: 1026 NYYGASTEDEILTGNLRNR--ASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSCKE 1083
+Y A +E+ I+ G L + + +D + G+MK+ + + +NE + FG KE
Sbjct: 1813 RHYSAESEESIMIGFLDQGFISDKVSKDIK--GEMKNDYIKIQQTFENEFLKEFGEQHKE 1870
Query: 1084 N-------EHPQLASAWYHVTYSPSYCKERMALLSFPWI 1115
N + SAWYHV YS K+ A L F WI
Sbjct: 1871 NCLLIHRVNIEKKVSAWYHVAYSD--LKDDRA-LGFYWI 1906
>gi|14475571|emb|CAC41975.1| putative RNA dependent RNA polymerase [Dictyostelium discoideum]
Length = 1964
Score = 256 bits (653), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 215/759 (28%), Positives = 364/759 (47%), Gaps = 98/759 (12%)
Query: 392 ALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFS 451
+TP + + P L+ S V+ F +S+F+ V V E L +G+ +
Sbjct: 768 VFITPSRTIFIQPTLQRSCRAVRKFG--SSNFIMVKIVNESLEPL----------QGVNN 815
Query: 452 K-PYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWM 510
K P +RI IL+ GI++G K Y + S SQLR S W F SN ++ V+ W
Sbjct: 816 KHPLHE---NRIKPILEGGILVGGKIYSYAGNSNSQLREYSSW-FVSN-QIGTHTVKIWS 870
Query: 511 GC--FNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKI 568
G + +R +C +G +FS++ T+ +P + I D+ NT+ F++G G+I
Sbjct: 871 GIEHVDNVRKFFRC---IGLMFSTTIPTVTLPQNRIYRIQDIT----RNTHVFTEGCGEI 923
Query: 569 SLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSF--RKLSLRRSMLKFE-----S 621
A+ + + + A+Q+R GG KG++ V+ + + +R SM+KF
Sbjct: 924 GPELAKHLNENYNFRPSTCAYQVRIGGNKGMLVVNNQAPDPSGIYIRPSMVKFNPIVCGD 983
Query: 622 RNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDV 681
+R L + S + C LNR++ISLLSTLG +D VF A+Q L + +++ + A
Sbjct: 984 EHRTLEICSVSTTSRCKLNRQVISLLSTLGTQDNVFFALQDHYLNQVAQIVNDTNA---- 1039
Query: 682 LQKLNGVDSKNILVKMLLQGYEPNV--EPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLL 739
SK +V+ E + +PY+ +L+S ++ ++ ++ +C I + R+L
Sbjct: 1040 --------SKQAIVEFFPDITEGELYQDPYIRRILISLYKLKMERIQQKCHIEIKDSRML 1091
Query: 740 IGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGD 799
+G D T L VFV++ E+ + + +++G V+V KNPC HPGD
Sbjct: 1092 LGVCDPTNSLPPNTVFVQLEEEDEDDDDGRKY--------EKVIEGLVMVIKNPCTHPGD 1143
Query: 800 VRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEP 859
VR L+AV ++L + + ++F KG+ P+ E SG DLDGD +F +D LI ++
Sbjct: 1144 VRYLKAVDNLRL--RHLRNVLVFSTKGDVPNFKEISGSDLDGDRYFFCYDKSLIGNRSKS 1201
Query: 860 PMDYTG--------RRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKA 911
Y G +++ + + L ++ V+ LG + +HL A D A
Sbjct: 1202 ETAYLGDETVSNNDKKANVFNDPFALSSMYSTNVE---RQELGKMYNSHL--AISDLFGA 1256
Query: 912 RSSKCLHLATLHSMAVDFAKTG----APAEMPLALKPKEFPDFMEREDKPR--YISFGVL 965
+ ++ +D+ KTG P E + LK K +P +M+RE+ R Y S ++
Sbjct: 1257 NHEFSIQISKECFKEIDYPKTGIHGTIPKEANVWLKTKGYPHYMQRENSTRVYYQSKTIM 1316
Query: 966 GKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALM 1025
GK+Y D I Q+ + + S D VD +E +L A+ Y+ ++++L+
Sbjct: 1317 GKMY----DQIDQL---VYIGDFLPNISLDKSNLVDDYEIYLNSAKILYSQYKLQVHSLL 1369
Query: 1026 NYYGASTEDEILTGNLRNR--ASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSCKE 1083
+Y A +E+ I+ G L + + +D + G+MK+ + + +NE + FG KE
Sbjct: 1370 RHYSAESEESIMIGFLDQGFISDKVSKDIK--GEMKNDYIKIQQTFENEFLKEFGEQHKE 1427
Query: 1084 N-------EHPQLASAWYHVTYSPSYCKERMALLSFPWI 1115
N + SAWYHV YS K+ A L F WI
Sbjct: 1428 NCLLIHRVNIEKKVSAWYHVAYSD--LKDDRA-LGFYWI 1463
>gi|14475569|emb|CAC41974.1| putative RNA dependent RNA polymerase [Dictyostelium discoideum]
Length = 1883
Score = 255 bits (652), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 213/759 (28%), Positives = 364/759 (47%), Gaps = 97/759 (12%)
Query: 392 ALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFS 451
+TP + + P L+ S V+ F +S+F+ V V E L +G+ +
Sbjct: 943 VFITPSRTIFIQPTLQRSCRAVRKFG--SSNFIVVKIVNESLEPL----------QGVNN 990
Query: 452 K-PYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWM 510
K P +RI IL+ GI++G + Y + S SQLR S W F SN ++ V+ W
Sbjct: 991 KHPLHE---NRIKPILEGGILVGGEIYSYAGNSNSQLREYSSW-FVSN-QIGTHTVKIWS 1045
Query: 511 GC--FNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKI 568
G + +R +C +G +FS++ T+ +P + I D+ NT+ F++G G+I
Sbjct: 1046 GIEHVDNVRKFFRC---IGLMFSTTIPTVTLPQNRIYRIQDIT----RNTHEFTEGCGEI 1098
Query: 569 SLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSF--RKLSLRRSMLKFE-----S 621
A+ + + + A+Q+R GG KGV+ V+ + + +R SM+KF
Sbjct: 1099 GPELAKHLNENYNFRPSTCAYQVRIGGNKGVLVVNNQAPDPSGIYIRPSMVKFNPIDCGD 1158
Query: 622 RNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDV 681
+R L + S + C LNR++ISLLSTLG +D VF A+Q L + +++ + A
Sbjct: 1159 EHRTLEICSVSTTSRCKLNRQVISLLSTLGTQDNVFFALQDHYLNQVAQIVNDTNA---- 1214
Query: 682 LQKLNGVDSKNILVKMLLQGYEPNV--EPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLL 739
SK +V+ E + +PY+ +L+S ++ ++ ++ +C I + R+L
Sbjct: 1215 --------SKQAIVEFFPDITEGELYQDPYIRRILISLYKLKMERIQQKCHIEIKDSRML 1266
Query: 740 IGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGD 799
+G D T L VFV++ E+ + + + +++G V+V KNPC HPGD
Sbjct: 1267 LGVCDPTNSLPPNTVFVQLEEEDEDDDDDGRKY-------EKVIEGLVMVIKNPCTHPGD 1319
Query: 800 VRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEP 859
VR L+AV ++L + + ++F KG+ P+ E SG DLDGD +F +D LI +E
Sbjct: 1320 VRYLKAVDNIRL--RHLRNVLVFSTKGDVPNFKEISGSDLDGDRYFFCYDKSLIGNRSES 1377
Query: 860 PMDY--------TGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKA 911
Y +++ + + L ++ + LG + +HL A D A
Sbjct: 1378 ETAYLVVETVSNNDKKANVFNDPFALSSMYSTNAE---RQELGKLYHSHL--AISDQYGA 1432
Query: 912 RSSKCLHLATLHSMAVDFAKTG----APAEMPLALKPKEFPDFMEREDKPR--YISFGVL 965
+ ++ +D+ KTG P E+ + L+ +P +M+RE+ R Y S ++
Sbjct: 1433 NHKYSIQISKECFKEIDYPKTGIHGTIPKEVNIRLQTVGYPHYMQRENSTRVYYQSKKIM 1492
Query: 966 GKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALM 1025
GK+Y D I Q+ + + S D VDG+E +L A+ Y+ ++++L+
Sbjct: 1493 GKMY----DQIDQL---VYIGDFLPNISLDKSNLVDGYEIYLNSAKILYSQYKLQVHSLL 1545
Query: 1026 NYYGASTEDEILTGNLRNR--ASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSCKE 1083
+Y A +E+ I+ G L + + +D + G+MK+ + + +NE + FG KE
Sbjct: 1546 RHYSAESEESIMIGFLDQGFISDKVSKDIK--GEMKNDYIKIQQTFENEFLKEFGEQHKE 1603
Query: 1084 N-------EHPQLASAWYHVTYSPSYCKERMALLSFPWI 1115
N + SAWYHV YS K+ A L F WI
Sbjct: 1604 NCLLIHRVNIEKKVSAWYHVAYSD--LKDDRA-LGFYWI 1639
>gi|66804721|ref|XP_636093.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
gi|60464394|gb|EAL62541.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
Length = 2417
Score = 254 bits (650), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 213/759 (28%), Positives = 364/759 (47%), Gaps = 97/759 (12%)
Query: 392 ALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFS 451
+TP + + P L+ S V+ F +S+F+ V V E L +G+ +
Sbjct: 1196 VFITPSRTIFIQPTLQRSCRAVRKFG--SSNFIVVKIVNESLEPL----------QGVNN 1243
Query: 452 K-PYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWM 510
K P +RI IL+ GI++G + Y + S SQLR S W F SN ++ V+ W
Sbjct: 1244 KHPLHE---NRIKPILEGGILVGGEIYSYAGNSNSQLREYSSW-FVSN-QIGTHTVKIWS 1298
Query: 511 GC--FNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKI 568
G + +R +C +G +FS++ T+ +P + I D+ NT+ F++G G+I
Sbjct: 1299 GIEHVDNVRKFFRC---IGLMFSTTIPTVTLPQNRIYRIQDIT----RNTHEFTEGCGEI 1351
Query: 569 SLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSF--RKLSLRRSMLKFE-----S 621
A+ + + + A+Q+R GG KGV+ V+ + + +R SM+KF
Sbjct: 1352 GPELAKHLNENYNFRPSTCAYQVRIGGNKGVLVVNNQAPDPSGIYIRPSMVKFNPIDCGD 1411
Query: 622 RNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDV 681
+R L + S + C LNR++ISLLSTLG +D VF A+Q L + +++ + A
Sbjct: 1412 EHRTLEICSVSTTSRCKLNRQVISLLSTLGTQDNVFFALQDHYLNQVAQIVNDTNA---- 1467
Query: 682 LQKLNGVDSKNILVKMLLQGYEPNV--EPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLL 739
SK +V+ E + +PY+ +L+S ++ ++ ++ +C I + R+L
Sbjct: 1468 --------SKQAIVEFFPDITEGELYQDPYIRRILISLYKLKMERIQQKCHIEIKDSRML 1519
Query: 740 IGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGD 799
+G D T L VFV++ E+ + + + +++G V+V KNPC HPGD
Sbjct: 1520 LGVCDPTNSLPPNTVFVQLEEEDEDDDDDGRKY-------EKVIEGLVMVIKNPCTHPGD 1572
Query: 800 VRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEP 859
VR L+AV ++L + + ++F KG+ P+ E SG DLDGD +F +D LI +E
Sbjct: 1573 VRYLKAVDNIRL--RHLRNVLVFSTKGDVPNFKEISGSDLDGDRYFFCYDKSLIGNRSES 1630
Query: 860 PMDY--------TGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKA 911
Y +++ + + L ++ + LG + +HL A D A
Sbjct: 1631 ETAYLVVETVSNNDKKANVFNDPFALSSMYSTNAE---RQELGKLYHSHL--AISDQYGA 1685
Query: 912 RSSKCLHLATLHSMAVDFAKTG----APAEMPLALKPKEFPDFMEREDKPR--YISFGVL 965
+ ++ +D+ KTG P E+ + L+ +P +M+RE+ R Y S ++
Sbjct: 1686 NHKYSIQISKECFKEIDYPKTGIHGTIPKEVNIRLQTVGYPHYMQRENSTRVYYQSKKIM 1745
Query: 966 GKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALM 1025
GK+Y D I Q+ + + S D VDG+E +L A+ Y+ ++++L+
Sbjct: 1746 GKMY----DQIDQL---VYIGDFLPNISLDKSNLVDGYEIYLNSAKILYSQYKLQVHSLL 1798
Query: 1026 NYYGASTEDEILTGNLRNR--ASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSCKE 1083
+Y A +E+ I+ G L + + +D + G+MK+ + + +NE + FG KE
Sbjct: 1799 RHYSAESEESIMIGFLDQGFISDKVSKDIK--GEMKNDYIKIQQTFENEFLKEFGEQHKE 1856
Query: 1084 N-------EHPQLASAWYHVTYSPSYCKERMALLSFPWI 1115
N + SAWYHV YS K+ A L F WI
Sbjct: 1857 NCLLIHRVNIEKKVSAWYHVAYSD--LKDDRA-LGFYWI 1892
>gi|115437172|ref|NP_001043229.1| Os01g0527600 [Oryza sativa Japonica Group]
gi|113532760|dbj|BAF05143.1| Os01g0527600, partial [Oryza sativa Japonica Group]
Length = 385
Score = 254 bits (650), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 152/366 (41%), Positives = 208/366 (56%), Gaps = 35/366 (9%)
Query: 785 GKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIF 844
G V++ KNPCLHPGDVR+LEAV +L VDC++FPQKGERPH NE SG DLDGD++
Sbjct: 3 GTVVIAKNPCLHPGDVRILEAVDVPELHH--LVDCLVFPQKGERPHANEASGSDLDGDLY 60
Query: 845 FISWDNDLIPCETEP--PMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLV 902
F++WD LIP + PMDY+ ++ + V+ +I FF+ MI++ LG I AH+V
Sbjct: 61 FVTWDEKLIPPGKKSWNPMDYSPPEAKQLPRQVSQHDIIDFFLKNMISENLGRICNAHVV 120
Query: 903 HADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISF 962
HAD A KC+HLA L + AVDF KTG A MP LKPK +PDFM +ED Y S
Sbjct: 121 HADLSEYGAMDEKCIHLAELAATAVDFPKTGKLAIMPPHLKPKVYPDFMGKEDGQSYKSE 180
Query: 963 GVLGKLYRATLDSIMQIRSNAIWSEKIA---EASYDHDLEVDGFEAFLGVAESHKEMYEE 1019
+LG+LYR SI + + + S+++ + YD DLEV G FL A K Y+
Sbjct: 181 KILGRLYR----SIQEASNGDVVSQEVCTPNDLPYDIDLEVPGASDFLASAWQCKCSYDA 236
Query: 1020 EMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWF-- 1077
+++AL++ Y TE E++TG++ ++ +++ GD+KDR+ + L+ E K F
Sbjct: 237 QLSALLSQYRVRTEAELVTGHI---TFLVKNSSKKQGDIKDRLKTAYSALRKEFKSTFES 293
Query: 1078 --------GSSCKENEHPQLASAWYHVTYSPSYC-----------KERMALLSFPWIVGD 1118
G K + ASAWY VTY P + +E A LSF WI D
Sbjct: 294 IASDQCEIGDDEKNLLYEMKASAWYQVTYHPKWVEKSRGILGPDGEEIPASLSFAWIPVD 353
Query: 1119 ILLNIK 1124
L IK
Sbjct: 354 YLARIK 359
>gi|390596235|gb|EIN05637.1| RdRP-domain-containing protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 1230
Score = 253 bits (645), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 193/650 (29%), Positives = 307/650 (47%), Gaps = 90/650 (13%)
Query: 384 HNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALST 443
+ + C VTP I + SN V++ + + F+RV F +ED+ L
Sbjct: 399 NGIFDCLHVAVTPSSIIPREQYPDRSNRVIRRYPNHQQHFVRVQFCDEDY-------LQY 451
Query: 444 SIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFA----SND 499
R + + + R+ +++ GI IG + +EFLA+S S L++++VW
Sbjct: 452 RFDRDLDGDGF---VRDRVGGVMRTGIRIGGRAFEFLAYSQSALKDHAVWFVRPFNLDGH 508
Query: 500 EVSAEDVRGWMGCFNK-IRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVE-VTSDGN 557
V AE +R +G F K IR S ARM Q F+++ ++ V +++ IPD+E V S G
Sbjct: 509 RVDAEAIRQSLGTFTKVIRFPSLYGARMSQAFTATDPSITVTPNEIKRIPDIEIVDSTGQ 568
Query: 558 TYCFSDG-------------------IGKISLSFARQVA--------QKCGLSHTPSAFQ 590
F+DG +G ISL+ A+ +A +K G P AFQ
Sbjct: 569 KRQFTDGSLPSTLSYADPIDYFRLAGVGTISLALAKDIASALLAVRKRKRGKYFKPRAFQ 628
Query: 591 IRYGGYKGVIAVDRNS-FRKLSLRRSMLKFESRNRM-LNVTKWSESMPCFL-NREIISLL 647
IR+ G KG+++VD N R L LR SM+KFES + + + + K + FL NR +I +L
Sbjct: 629 IRFAGSKGMVSVDINEEGRVLCLRPSMIKFESPDSLDIEIAKTFDRPGKFLLNRPLIMIL 688
Query: 648 STLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKM--------LL 699
LG FEA+Q + + + + +L+ ++G+ L + L
Sbjct: 689 EGLGAPAAAFEALQDAAVEEAEAARESLQKSARMLE-VHGLGGAYRLPSVADVPHRLGLP 747
Query: 700 QGYEPNV------EPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQ 753
+ E + ++ M+ + L +LK RI VP L+G D G+L G+
Sbjct: 748 RSSEARGTTQCIDDEFMDRMVAFAVNHVLRELKHHARIPVPDSWTLVGIADIHGVLEEGE 807
Query: 754 VFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYE----M 809
VF V + Q + ++G V+VT++P HPGDV++ A+
Sbjct: 808 VFACV-----QPPQGGQRVY---------LEGNVMVTRSPVAHPGDVQMARAIGRPPPGS 853
Query: 810 KLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSR 869
+ + + +IF KG RP P+ GGDLDGD+F +S D+ P PP Y +
Sbjct: 854 AYDTEPIPNTVIFSVKGSRPLPSALGGGDLDGDVFNVSQFADIFPRHLHPPASYEAAVRK 913
Query: 870 IMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDF 929
+D D T+E++ F VD++ ND LG I+ L+ AD+ P+ ++C+ L+ LHS AVDF
Sbjct: 914 ELDRDSTIEDVMDFVVDFINNDRLGVIAINWLIIADQSPEGVFCTECIKLSQLHSDAVDF 973
Query: 930 AKTGAPAEMPLALKPK---------EFPDFMEREDKPRYISFGVLGKLYR 970
K+G +PL P+ P+ + ED Y S +GKL+R
Sbjct: 974 QKSG--RSVPLGDVPRLLMRARPDWNAPETINPEDGAYYESTKAIGKLFR 1021
>gi|134114255|ref|XP_774375.1| hypothetical protein CNBG3560 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257010|gb|EAL19728.1| hypothetical protein CNBG3560 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 1123
Score = 253 bits (645), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 237/784 (30%), Positives = 377/784 (48%), Gaps = 98/784 (12%)
Query: 324 AELIQILSGLSMETA--------LMVLQKLHKLKSICYDPVSFVKTQLHVLGRNCKSIPL 375
AELI +L +S TA L QK+ +K + +F++ +
Sbjct: 313 AELIAMLRKVSSSTAFHDRILEALFSQQKIRDIKHLIPKLAAFLRRR------------- 359
Query: 376 SSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSK 435
I +++ LVTP ++ P+ E SN V + + +RV F +E+
Sbjct: 360 ---PPYIQPHLVLIRTVLVTPTRLLIGPPQYEPSNSVTRRYHDKLDGIIRVQFTDEEDRL 416
Query: 436 LPAN--ALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVW 493
A+ L SI + I +R+ LQ G++IG + + +A SASQ + +++W
Sbjct: 417 FIADNMKLIDSINPAV-------GIMARVRRALQFGLIIGGETFYPVASSASQQKEHAMW 469
Query: 494 MFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVT 553
F +N + ++R WMG ++ V+K AARMG FS+S+ + + + E +PD+E
Sbjct: 470 -FINNKVIDGLELRNWMGTVHET-VVAKHAARMGLPFSTSR-IVNMKINIGEELPDIE-- 524
Query: 554 SDGNTYCFSDGIGKISLSFARQVA----QKCGLSHTPSAFQIRYGGYKGVIA-----VDR 604
N CF+DG G Q A +K G++ PSA Q R GG KGV++ V+
Sbjct: 525 --RNGRCFTDGCGIAGREVLNQAALALNEKVGINSQPSAIQFRLGGAKGVLSDWSQLVNE 582
Query: 605 NSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQ 664
R LR SM+KF+S LNV + ++ FLNR+ I+++ GV E+ + +
Sbjct: 583 YEIR---LRPSMIKFKSDLADLNVIRIAKYQAAFLNRQFINIMCANGVPHELIIGIFEDA 639
Query: 665 LILLG--KMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQL 722
+ + K + A + Q+L + + L +++ G+ N P L + L
Sbjct: 640 IADIKGFKDRVWNNAVTENDQQLIALCNDFPLAQLIKSGFNEN--PLLLDVAAIIECRAL 697
Query: 723 SDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSI 782
DLK R R+ + G LIG DETG L G+VF + + D+S I
Sbjct: 698 QDLKWRARVKLLDGVYLIGIADETGTLKEGEVFC-------QFQENDES-------PPKI 743
Query: 783 VKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGD 842
V +VLV + P LHPGDVR AV +L + + I+F +G R P+ GGDLDGD
Sbjct: 744 VVNEVLVCRAPALHPGDVRRAWAVDNPEL--RHLKNVIVFSTQGMRDMPSMLGGGDLDGD 801
Query: 843 IFFISWDNDLI-PCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHL 901
+ + WD + + PMDY + H VT + +++ FV Y++ND LG + HL
Sbjct: 802 DYTLIWDQRFVQSLKVYDPMDYEAPDPISVKH-VTQKHLNENFVQYILNDVLGQVDNCHL 860
Query: 902 VHADR----DPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMERED-K 956
+D DP +CLHL+ +HS AVDFAKTG A + +L+PKE+PDFM+++D K
Sbjct: 861 ALSDMYTPFDP------RCLHLSEIHSTAVDFAKTGQAAALDPSLRPKEWPDFMDKDDVK 914
Query: 957 PRYISFGVLGKLYRATLDSIMQIRSNAIWSEK-IAEASYDHDLEVDGF---EAFLGVAES 1012
Y S G+LGK++R ++++A +S + + Y D + F E+ L +
Sbjct: 915 VVYESTGILGKIFRI-------VQADAHFSPSDLEQMGYPTDPRITRFPLHESLLDRLKP 967
Query: 1013 HKEMYEEEMNALMNYYGASTEDEILTG-NLRNRASYLQRDNRRYGDMKDRILLSAKNLQN 1071
K YE ++ M Y E EI +G +RN+ RD +++ L N++
Sbjct: 968 LKASYERDLQYDMRRYRV-YEPEIPSGIAIRNKRRKRVRDQNLNEPLREAYNLLVNNVRE 1026
Query: 1072 EAKE 1075
A++
Sbjct: 1027 TAQK 1030
>gi|402218300|gb|EJT98377.1| RdRP-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 908
Score = 253 bits (645), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 194/647 (29%), Positives = 322/647 (49%), Gaps = 87/647 (13%)
Query: 392 ALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFS 451
A+VTP I+ GP L+ SN V++ + ++ F+R++F ED L R + S
Sbjct: 139 AIVTPTCIHLEGPYLDQSNSVLRAYPEHQHYFLRLSFASEDH-------LPLYNDRDVDS 191
Query: 452 KPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDE-----VSAEDV 506
+ + + RI TIL++G+ + +H+EFLA+S S LR +SVWM A D ++A V
Sbjct: 192 RLF---VGYRIGTILREGVTLAGRHFEFLAYSLSALRQHSVWMVAPFDHPVLGLMTANRV 248
Query: 507 RGWMGCFNKIRSVSKCAARMG----QLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFS 562
R +G F++ VSKC AR G Q F++++ ++V+ +++ IPD + N F+
Sbjct: 249 RDRLGDFSR---VSKCPARYGARLAQAFTATEPSIVLKPENIVEIPDK--INKANKLIFT 303
Query: 563 DGIGKISL-----SFARQVAQKCGL----SHTPSAFQIRYGGYKGVIAVDRNSFRK---L 610
DG+G +SL ++ R V + L + FQ R GG KG++++ N +
Sbjct: 304 DGVGGMSLELLEGTWKRLVENRPHLRTKIDFPATVFQFRLGGNKGLLSL--NPLLPGLVM 361
Query: 611 SLRRSMLKFESRNRM-LNVTK-WSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILL 668
+R SM KF++ + + L + K + P FLNR I LL + GV +VF +Q+ + +
Sbjct: 362 QVRPSMNKFDAPDSLGLEIAKSFERPRPFFLNRPFIMLLESRGVHADVFLTLQRNAVKAV 421
Query: 669 --GKMLINREAALDVLQKLNGVDSKNILVKMLL----------QGYEPNVEPYLSMMLLS 716
K + R + + L G ++++ + QG +P+L ++
Sbjct: 422 EDSKSSLIRASIMTETYGLGGTFWIRLILRNIHDILGLDFEAGQGLTTFYDPFLKHIIDV 481
Query: 717 HHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRV 776
N L +++ R RI VP LIG DE +L +++ + H+
Sbjct: 482 GKANALREIRFRARIPVPNSWTLIGVADEHDVLGKNEIYACI---------------HKP 526
Query: 777 DD-KTSIVKGKVLVTKNPCLHPGDVRVLEAVYE------MKLEEKDYVDCIIFPQKGERP 829
D + ++G +VTK+P L PGD + + + L +C++F +G RP
Sbjct: 527 GDPEPHWIEGPAIVTKSPSLGPGDAQFVTGIGRPPPDCPFMLGPYPLKNCVVFSCRGVRP 586
Query: 830 HPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMI 889
P+ GGDLDGD F + + L P P DYT +D D T+ ++ F +DY+
Sbjct: 587 IPSMLGGGDLDGDEFNVVQYSSLFPQYPADPDDYTAAERAELDRDCTMNDVIDFIIDYVN 646
Query: 890 NDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPA---EMPLALKPKE 946
ND +G ++T HL+ AD+ PD + S C LA L+++A+DFAKTG P ++P L +
Sbjct: 647 NDLVGRLATEHLILADQHPDGVKYSNCHQLAQLYALALDFAKTGTPIDQDQIPSLLNDMK 706
Query: 947 FPDFMEREDK------PRYISFGVLGKLYRATLDSIMQIRSNAIWSE 987
PD+++RE + Y S LG ++R + +QI +AI E
Sbjct: 707 -PDYLQREQQVGKQSTKFYQSQRALGHMFR---EPDLQIDFDAIREE 749
>gi|353235420|emb|CCA67433.1| related to RNA-directed RNA polymerase (RdRP) [Piriformospora
indica DSM 11827]
Length = 1169
Score = 253 bits (645), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 196/633 (30%), Positives = 318/633 (50%), Gaps = 78/633 (12%)
Query: 383 DHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKL--PANA 440
+ V C+RA VTP + GP + +N V++ + Y +F+RV F EED L N
Sbjct: 377 ESGVFECHRATVTPSSVVLTGPLPDETNRVIRKYRAYGHNFIRVDFTEEDRLHLRKEKNV 436
Query: 441 LSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWM---FAS 497
T+I + RI +++G+ + + +E LA+S+S L+ ++VW F +
Sbjct: 437 DLTAI------------LDDRIGEFMKNGLSVAGRKFELLAYSSSALKEHAVWFMTPFTT 484
Query: 498 NDE--VSAEDVRGWMGCFNK-IRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTS 554
+D +++E +R +G F+K I ++ AR+ Q FSS++ ++ V V ++ IPD E S
Sbjct: 485 SDGQYITSESIRRSLGDFSKVIYCPARYGARLSQAFSSTEPSITVRVDEIRFIPDKE--S 542
Query: 555 DGNTYCFSDGIGKISLSFARQVAQKCGLSHT---------PSAFQIRYGGYKGVIAVD-R 604
D + ++DG+G IS A+++ K S + PSAFQIR GG KG++ VD R
Sbjct: 543 DYGS-LYTDGVGTISPQAAKEIWHKYTESRSKRNRRRLKRPSAFQIRLGGLKGMLCVDNR 601
Query: 605 NSFRKLSLRRSMLKFESRNRMLNVTK-WSESMPCFLNREIISLLSTLG-VKDEVFEAMQQ 662
R + +R SM KF S +R + + + + M FLNR +I LL TL V E F A+Q
Sbjct: 602 LRGRVICVRESMNKFHSDDREVEIARVFDRPMAMFLNRPLIMLLETLKKVPLEPFMALQT 661
Query: 663 QQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVE-----------PYLS 711
+ + + + +AA +L++ G+ + L + LQ ++ V P+L
Sbjct: 662 KAVEETRDAMKSFDAAARILERY-GLGTAFRLTSVFLQLHKLGVSLALKDRSQGLLPFLG 720
Query: 712 MMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQS 771
ML + L DLK + RI VP L+G DE L +++ RV
Sbjct: 721 RMLQFVENHILRDLKYKARIPVPNAWTLVGVSDEYDYLGENEIYARVRT----------- 769
Query: 772 FFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMK------LEEKDYVDCIIFPQK 825
+D + ++G V+++++P +HPGD R++ A+ + LEE +C++FP K
Sbjct: 770 ----IDGEEQYLEGPVMISRSPTVHPGDARMVWAIGKPSRGAPPGLEE--LTNCVVFPCK 823
Query: 826 GERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFV 885
G P +GGDLDGD++ + D L DY + +D T++++ +F V
Sbjct: 824 GHPSLPQCLAGGDLDGDLYCLVLDPQLHFRWQFQHGDYDPPQLVTLDRPSTIKDVAQFVV 883
Query: 886 DYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTG---APAEMPLAL 942
+Y+ ND LG IS ++ AD D C+ LA LHS+AVD+ KTG +E+P L
Sbjct: 884 NYIKNDLLGIISMQCMLIADVRKDCLADPDCVKLAKLHSIAVDYPKTGRHVESSEIPW-L 942
Query: 943 KPKEFPDFMERE----DKPRYISFGVLGKLYRA 971
+ PD+ E + Y S +G L+RA
Sbjct: 943 DSRRRPDWYANELHNNNPDLYQSQRHIGHLFRA 975
>gi|358369173|dbj|GAA85788.1| RNA-directed RNA polymerase (Sad-1) [Aspergillus kawachii IFO 4308]
Length = 745
Score = 253 bits (645), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 187/582 (32%), Positives = 297/582 (51%), Gaps = 59/582 (10%)
Query: 579 KCGLSHTPSAFQIRYGGYKGVIAVDRNS-FRKLSLRRSMLKFESRNRMLNVTKWSESMPC 637
K PSAFQ R GG KG++AV ++ +++ +R S KF + + L + +WS+
Sbjct: 7 KTPTGEPPSAFQFRLGGCKGMLAVSSDAQPQEIHIRESQNKFPTVHNGLEIIRWSQYSMA 66
Query: 638 FLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILV-K 696
LNR++I ++STLG+ DEVF A + L L + + + A++VL+K + + V +
Sbjct: 67 TLNRQLILVMSTLGIPDEVFHAKLKSMLRALDEAMESDSRAIEVLKKYVDPNQTTLTVSQ 126
Query: 697 MLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFV 756
M+ G+ + EP+ + +L + LK + +I + G L+G DETGIL G +
Sbjct: 127 MVSDGFRRSKEPFFTSILALWRTWHIKYLKEKAKIVIDNGTNLLGVMDETGILK-GYFYD 185
Query: 757 RVTMTREELESKDQSF---FHRVDDKTS--------IVKGKVLVTKNPCLHPGDVRVLEA 805
++ LE K + F +V + +++G ++ +NP LHPGD+RV+ A
Sbjct: 186 KIPKEDASLEQKLAALPEIFLQVPRTSGSEGGAQYEVIEGLCILARNPSLHPGDIRVVRA 245
Query: 806 VYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCE-TEPPMDYT 864
V +L D ++ PQ G+R + CSGGDLDGD + + WD DLI + PM YT
Sbjct: 246 VNVPELHS--LRDVVVLPQTGDRDIASMCSGGDLDGDDYLVIWDQDLIHKDWFLDPMRYT 303
Query: 865 GRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHS 924
+++ +DHDVT++E+ FFV YM ND+L I+ AH+ AD+ D KC+ LA LHS
Sbjct: 304 SNKAQDLDHDVTVDEVTSFFVMYMKNDSLPTIAHAHVAWADQLEDGVNEEKCIRLAQLHS 363
Query: 925 MAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPR---YISFGVLGKLYRATLDSIMQIRS 981
AVD+ KTG PA M L+P+ +P FME+ KP+ Y S +LG+LY A
Sbjct: 364 DAVDYNKTGRPAIMTRNLQPRRWPHFMEKP-KPKDQIYCSRKILGQLYDAVERVDFVPSL 422
Query: 982 NAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNL 1041
+ E+I S +EV E A++ K ++ M +M + TE E+ + +
Sbjct: 423 EMPFDERILNCS----IEVS--EDLYTFAKNLKNEFDTAMRRIMAQHEIKTEFEVWSTFI 476
Query: 1042 RNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSCKENEHPQ-------LASAWY 1094
N S++ +D + + ++ +SA + +E F C + LA A Y
Sbjct: 477 LNH-SHMSKDYKFHEEIG---AISAAH-----RETFRKQCYNKVDGRTFELLAPLAVAMY 527
Query: 1095 HVTY-------------SPSYCKER---MALLSFPWIVGDIL 1120
VT+ SP + + + L+SFPWI+ IL
Sbjct: 528 RVTHEEMTQALKKHRENSPPHETPKINQLPLISFPWILPHIL 569
>gi|67524519|ref|XP_660321.1| hypothetical protein AN2717.2 [Aspergillus nidulans FGSC A4]
gi|40743829|gb|EAA63015.1| hypothetical protein AN2717.2 [Aspergillus nidulans FGSC A4]
gi|259486372|tpe|CBF84157.1| TPA: RNA-directed RNA polymerase (Sad-1), putative (AFU_orthologue;
AFUA_3G06790) [Aspergillus nidulans FGSC A4]
Length = 1203
Score = 252 bits (644), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 204/654 (31%), Positives = 322/654 (49%), Gaps = 98/654 (14%)
Query: 390 YRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANA-LSTSIQRG 448
+R +VTP +I GPE E N +++ F + F+RV F +E+ + N ++ S+
Sbjct: 391 HRVVVTPSRITLHGPETEPLNRILRRFPNHHEYFIRVQFCDENGEDIYFNPRINNSL--- 447
Query: 449 IFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFAS--NDEVSAED- 505
I++R + +G I + Y FL FS S LR+ S W A +D+ S +
Sbjct: 448 ---------IFARFKNVFANGFQIAGRTYTFLGFSHSSLRSRSAWFSAPFIDDDGSLQSY 498
Query: 506 --VRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEM--IPDVEVTSDGNTYCF 561
+ +G F++I S ++CAAR+GQ FS + + + + + IPDV+V F
Sbjct: 499 FTIIKAIGRFSEITSPARCAARIGQAFSETPFAVNLKENGIRVLRIPDVQVGGR----VF 554
Query: 562 SDGIGKISLSFARQVAQKCGL----SHTPSAFQIRYGGYKGVIAVD-RNSFRKLSLRRSM 616
SDG+G IS A+ V G+ + P+ FQIR GG KG++++D R K+ +R SM
Sbjct: 555 SDGVGTIS---AKAVDIIHGVLPPRNGAPTCFQIRLGGAKGMLSLDPRLRGSKICIRPSM 611
Query: 617 LKFESRNRMLNVT---KWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLI 673
KF++ ++ +NV S+ +P FLNR++I +L +GV E F +Q+ ++ L K
Sbjct: 612 TKFQTDDQ-VNVEICGSGSKPIPLFLNRQVIKILEDMGVDREWFMTLQELRIEQLRKATA 670
Query: 674 NREAALDVLQKLNGVDSKNILVKMLLQGYEPNVE----PYLSMMLLSHHENQLSDLKSRC 729
+ ++ + D L ++ L + ++ P+L ++ + +L LK +
Sbjct: 671 TTKNTATFVKGQSVADCVK-LYRLFLLFHNLKLDYKKIPFLRAVVEAMVLRELRLLKHKA 729
Query: 730 RIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLV 789
RI V KG L G DETG LN +VFV + L + Q+ ++LV
Sbjct: 730 RIPVHKGITLYGVMDETGFLNENEVFV-TYQAMDRLAAPPQN-------------CRLLV 775
Query: 790 TKNPCLHPGDVRVLEAVYEMKLEE-KDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISW 848
T++P LH GD++ V K + +CI+F QKG R P++ SGGDLDGD++ I W
Sbjct: 776 TRSPALHNGDIQYPYNVVPPKGHPLQQQRNCIVFSQKGTRDLPSQLSGGDLDGDLYNIIW 835
Query: 849 DNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDP 908
D P P +Y + V E++ FFV++M +D LG I+T H++ AD+
Sbjct: 836 DPAAAPKRVFTPANYPRNPPLDIKRVVEREDMANFFVEFMQSDRLGVIATKHMILADQME 895
Query: 909 DKARSSKCLHLATLHSMAVDFAKTGAPA---EMPLALKPKEFPDFM---------ERED- 955
S C LA LHS AVDF+KTG P EMP + + PDF+ +R++
Sbjct: 896 LGTSHSDCKKLAQLHSTAVDFSKTGIPVRLKEMPFVNRSR--PDFLAPGPLAKIHDRQNI 953
Query: 956 --KPRYI------------------SFGVLGKLYRATLDSIMQIRSNAIWSEKI 989
+ RY+ S +LGKLYRA I + IW++ I
Sbjct: 954 QLEARYVHPYPDDDIDFSPVHKYYRSEKILGKLYRA-------INEHEIWTKDI 1000
>gi|452977804|gb|EME77568.1| hypothetical protein MYCFIDRAFT_60792 [Pseudocercospora fijiensis
CIRAD86]
Length = 1015
Score = 252 bits (644), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 186/595 (31%), Positives = 307/595 (51%), Gaps = 46/595 (7%)
Query: 374 PLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDW 433
P KR + N++ ++ +VTP I GPE E +N V++ +A+ DF+RV F +E
Sbjct: 197 PFELAKRHVHINLI--HKVIVTPAGIRLEGPEPEPTNRVLRKYAENIDDFVRVVFQDEHG 254
Query: 434 SKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVW 493
+ + R ++ Y + R +L IVI + + FL FS S LR+ S W
Sbjct: 255 GPVRYDP------RTDLARIY----HERFRNVLDTSIVICGRGFSFLGFSHSSLRSQSCW 304
Query: 494 MFA-----SNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIP 548
A + + AE V +G F+ IR+ +KCAAR+GQ F+ + T+ + + + +
Sbjct: 305 FMAPFVNRNGRLIFAEKVLKGLGDFSSIRTPAKCAARIGQNFTDTNATVHL---EPDQVF 361
Query: 549 DVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHT--PSAFQIRYGGYKGVIAVD-RN 605
D++V + N FSDG+G IS + R+V ++ G P+ QIR+ G KG++++D R
Sbjct: 362 DLQVI-ERNGRDFSDGVGTISEALLREVWRRYGTKKMLKPTVLQIRFQGAKGMVSLDPRL 420
Query: 606 SFRKLSLRRSMLKFESRNR-MLNVTKWS-ESMPCFLNREIISLLSTLGVKDEVFEAMQQQ 663
+ L LR +M K+++ +L + + +P LN++ I + LG+ VF +Q+
Sbjct: 421 PGKALMLRANMRKYDTETSWVLEICGAGFKPLPMVLNQQFIKIFEDLGIPMSVFLDLQRS 480
Query: 664 QLILLGKMLINREAALDVLQKLNGVDSKNI--LVKMLLQ-GYEPNVEPYLSMMLLSHHEN 720
+ L +M + +L+ + + L++ L Q G++ + + +L ++
Sbjct: 481 AMKHLRQMTALSVNSAKLLEDSGIARATGMPRLIRDLAQIGFDYHEDHFLYSIVEMAVVT 540
Query: 721 QLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKT 780
QL D+K R RI V G L G DETG L GQ+FV +T + E K
Sbjct: 541 QLRDIKYRARIPVEAGVTLYGIMDETGYLKEGQIFV---ITEKAPEG----------GKH 587
Query: 781 SIVKGKVLVTKNPCLHPGDVRVLEAV-YEMKLEEKDYVDCIIFPQKGERPHPNECSGGDL 839
++K KV++T++P +HPGD++V++AV + + ++F + G+R P++ SGGDL
Sbjct: 588 ILIKDKVVITRSPAMHPGDIQVVDAVDVPPNSLLRRLSNVVVFSKWGDRDLPSKLSGGDL 647
Query: 840 DGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTA 899
DGDI+ I W ++P T DY ++D +VT++++ FFV +M D LG I T
Sbjct: 648 DGDIYNIIWHEGMVPRTTYTAADYPRVSPLVLDREVTIKDMSDFFVTFMETDLLGMICTT 707
Query: 900 HLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAP---AEMPLALKPKEFPDFM 951
H AD+ + CL LA L S AVD++KTG ++P K PDFM
Sbjct: 708 HKQLADQREAGSLDPDCLTLAGLASTAVDYSKTGISVKHTQIPRNDKHIFRPDFM 762
>gi|242221257|ref|XP_002476381.1| predicted protein [Postia placenta Mad-698-R]
gi|220724386|gb|EED78433.1| predicted protein [Postia placenta Mad-698-R]
Length = 1141
Score = 252 bits (643), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 206/712 (28%), Positives = 337/712 (47%), Gaps = 85/712 (11%)
Query: 299 NLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSF 358
L V FQ+ +L +Q + L + GL E MV + K+ S +F
Sbjct: 298 GLDWNVAFQVEALARSQFIDL--------RQTMGLRPEIEQMVAEHGPKVTSAFLR--NF 347
Query: 359 VKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAK 418
+ + + P ++ D N C R +VTP ++ GP+ E SN V + +
Sbjct: 348 LGQAKSIFWYGTEFTPPTT-----DDN-FDCLRVIVTPTCLHLEGPDPERSNRVFRRYPG 401
Query: 419 YASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYE 478
+F+RVTFV+E L R + + + I R+ +L G+ I +H+E
Sbjct: 402 QEQNFLRVTFVDE-------TRLMYRFDREVDGRGF---INRRVRHMLVQGLTIAGRHFE 451
Query: 479 FLAFSASQLRNNSVWM---FASND--EVSAEDVRGWMGCFNK------IRSVSKCAARMG 527
FLA+S S L+ ++VW F D EV A + +G F I ++ AAR+
Sbjct: 452 FLAYSQSALKEHAVWFVTPFRDPDGREVRASTIIASLGSFRPAFEPQLIYCPARYAARIS 511
Query: 528 QLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPS 587
Q F+++ ++ V +++V PD++ + YCF+DG+G+IS + AR ++ + +
Sbjct: 512 QAFTATDSSISVELEEVFYDPDIK--DNTGQYCFTDGVGRISPALARAISSELRAKKRRA 569
Query: 588 A--------FQIRYGGYKGVIAVDRN-SFRKLSLRRSMLKFESRNRMLNV---TKWSESM 635
FQIR+ G KG+++VD S R + LR SM+KF++ + LNV + +
Sbjct: 570 RRARTYTRLFQIRFMGSKGMLSVDYQLSDRSIFLRPSMIKFDAPDS-LNVEIAQAFDKPG 628
Query: 636 PCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDS---KN 692
+LNR +I LL LGV EVFEA+Q + + + E++ +L+ S +
Sbjct: 629 KYYLNRPLIMLLEGLGVPYEVFEALQDDAVQDAEGAVHSLESSARLLEAYGLGASFRLSS 688
Query: 693 ILVKMLLQGYEPNVEPYLSMMLLSHHENQ-LSDLKSRCRIYVPKGRLLIGCFDETGILNY 751
+V M G P E ++ N L +LK RI +P G L+G D G L
Sbjct: 689 TMVNMHRLGLRPLSEDIFWQQMMDFAVNHVLRELKHHARIPLPDGWTLVGVADVHGYLEE 748
Query: 752 GQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYE--- 808
G++F V +S D + ++G +++++P +HPGDV+++ A+
Sbjct: 749 GEIFACV-------DSPDLL-------EPIYLEGPTVISRSPTIHPGDVQLVHAIGRPPP 794
Query: 809 -MKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRR 867
E + + ++F KGERP P+ GGDLDGD++ ++ L P T Y
Sbjct: 795 GSPFEHESLRNGVVFSIKGERPLPSCLGGGDLDGDVYNVTTMPSLRPARTYRSGSYKPAV 854
Query: 868 SRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAV 927
+ +DH T+E++ F +Y+ +DTLG I+ L+ AD+ + CL LA LHS AV
Sbjct: 855 KKTVDHPSTMEDVADFVAEYINSDTLGIIAINWLIIADQSSEGILDPHCLRLAQLHSDAV 914
Query: 928 DFAKTGAPAEMPLALKPK---------EFPDFMEREDKPRYISFGVLGKLYR 970
D+ K+G P +PL P+ P+ + R Y S +G+LYR
Sbjct: 915 DYPKSGNP--VPLERIPRLKFKAKPDWNAPETLTRATPDFYESTRAIGRLYR 964
>gi|241244478|ref|XP_002402311.1| RNA-directed RNA polymerase, putative [Ixodes scapularis]
gi|215496312|gb|EEC05952.1| RNA-directed RNA polymerase, putative [Ixodes scapularis]
Length = 519
Score = 250 bits (639), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 178/549 (32%), Positives = 289/549 (52%), Gaps = 52/549 (9%)
Query: 506 VRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTS---DGNTYCFS 562
+R WMG F+ I +V+K ARMGQ FSS++Q ++V +V M+PD+E + Y FS
Sbjct: 1 IRDWMGRFDGIPNVAKRMARMGQCFSSTEQAVLVRKHEVRMVPDMEGGAHPVSRKPYVFS 60
Query: 563 DGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRN--SFRKLSLRRSMLKFE 620
DG+G +S+ A++V + L PSA QIRY G KG++ ++ + + L LR SM KF
Sbjct: 61 DGVGMMSVPLAQEVYKVMKLKERPSAIQIRYAGAKGMLCINPELPNQKLLYLRPSMQKFP 120
Query: 621 -SRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDE---VFEAMQQQQLILLGKMLINRE 676
+ + L V K S R++ + L + D + + + L LG I +
Sbjct: 121 CTSSDYLEVVKVSAP------RKLHTPLGRVHYLDSDRTIHQVSGEYHLEELGLGCIKDD 174
Query: 677 A--------ALDVLQKLNGV-DSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKS 727
A A+ VL K + S +I+V + +++++ H + L+
Sbjct: 175 AIMSRMVSTAMAVLTKPRYIISSCDIMVSCSCTMF--------NLVVVLH----AAGLRY 222
Query: 728 RCRIYVP--KGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKG 785
+ RI +P + R ++G D TG+L YGQVFV+ + E+ ++ + K ++ G
Sbjct: 223 KTRIALPVDRARNMLGVVDTTGVLRYGQVFVQCS----EMGARAS---QQGPPKCRVITG 275
Query: 786 KVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFF 845
+VLVTK PCLHPGDVR A+ E +L VDCI+FP +G RPHP+E +G DLDGD +
Sbjct: 276 QVLVTKCPCLHPGDVRKFTAIDEPRLHH--VVDCIVFPGQGHRPHPDEMAGSDLDGDEYI 333
Query: 846 ISWDNDLI-PCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHA 904
+ W+ L+ P + PM+++ R ++T+ ++ +F +Y+ ND++G +S AHL A
Sbjct: 334 VIWEPSLLFPGYNKQPMNFSDRNPEPERGEITINDMIQFLCNYIKNDSIGILSNAHLAWA 393
Query: 905 DRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMER-EDKPRYISFG 963
D++ + S +CL +A S+ +DFAK+G A + +P +PDFME+ K Y S
Sbjct: 394 DQEEEGIYSRRCLAIAEKISICLDFAKSGRTAYLRREERPMFYPDFMEKGSHKISYRSDR 453
Query: 964 VLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNA 1023
VLG LYR + S + +A L+V G++ + A + Y +
Sbjct: 454 VLGLLYRTCRSLEAAVGS---LGHRHVDAGRCLALDVPGWQRYESAALAALADYNTRLRR 510
Query: 1024 LMNYYGAST 1032
++N YG ++
Sbjct: 511 ILNQYGIAS 519
>gi|389746474|gb|EIM87654.1| RdRP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 976
Score = 250 bits (639), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 217/702 (30%), Positives = 340/702 (48%), Gaps = 78/702 (11%)
Query: 385 NVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTS 444
V Y ++TP GP + SN V++ F + F+RV+F +E+ + L + TS
Sbjct: 176 TVFDAYTLILTPTSKILEGPLPDQSNSVLRRFGHHDC-FIRVSFQDENHTPLRRDPSGTS 234
Query: 445 IQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWM---FASNDE- 500
IQ + RT+ S ++ GI + +H+EFL +S S LR +S+ F S+D
Sbjct: 235 IQELL-----RTRYKSAMVK----GIPLAGRHFEFLGYSMSGLREHSIIFMQAFESDDGS 285
Query: 501 -VSAEDVRGWMGCFNKIRS-VSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNT 558
++A+ +R +G F+ I + + AAR Q FS+S ++ + +++ I D S
Sbjct: 286 LMTADRIRSLLGNFSHISNKPALLAARWAQAFSASDPSVTLQSAEIQRIGDKRSPSGS-- 343
Query: 559 YCFSDGIGKISLSFARQV--------AQKCGLSHTPSAFQIRYGGYKGVIAVDRNSFRKL 610
F+DG G IS S AR V + + PS FQIR GG KG++ D N K+
Sbjct: 344 -LFTDGCGTISESLARDVWKFLQRHRRRAASMRLVPSCFQIRIGGAKGILFQDPNLIGKM 402
Query: 611 -SLRRSMLKFESRNRMLNV---TKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQ---- 662
LR S KFE+ + L + + S + FLNR +I LL LGVK +VF A+Q+
Sbjct: 403 VCLRPSQTKFENDSEALTLDIASTSSRPIRMFLNRSLILLLEFLGVKPDVFMALQKDATD 462
Query: 663 -----QQLILLGKMLINRE---AALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMML 714
+ L L + ++ + N + ++ L + LQG E + L+ +
Sbjct: 463 AVERARHSFLEAAKLFSHHGFGSSFRIASLFNNLVTQLKLDEGDLQGLECQI---LTKSI 519
Query: 715 LSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFH 774
+ L ++K R RI V L+G DE G L G++F V R+E
Sbjct: 520 EYAATHVLREIKFRARIPVHGSWTLLGVSDEWGCLREGEIFATV---RDE---------- 566
Query: 775 RVDDKTSI-VKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNE 833
TS+ ++G +L+T++P +HPGDV+++ AV +L + ++F +GER P+
Sbjct: 567 --HSGTSVEIQGPMLITRSPQIHPGDVQMVTAVRRPELAH--LTNVVVFSCEGERSLPSM 622
Query: 834 CSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTL 893
GGDLDGDI+ + D DL P T Y G +++D D T++++ F ++Y+ D +
Sbjct: 623 LGGGDLDGDIYNLILDPDLFPTHTCEAGGYVGLPHKVLDRDCTIDDVADFVINYIEADLV 682
Query: 894 GAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPA---EMPLALK-PKEFPD 949
G I+ HL AD P+ S CL LA S AVDF KTG P ++P A + PK PD
Sbjct: 683 GYIAILHLRIADLSPEGPNSKDCLLLAEKASHAVDFPKTGTPTNFDDLPRAPRGPK--PD 740
Query: 950 FMERED-KPRYISF----GVLGKLYR-ATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGF 1003
F+ E P SF VLG+L+R L+ + +++ I +A D +
Sbjct: 741 FLGSETVDPSSSSFYPSNKVLGRLFRNVPLEIVDADHEGSVFGSTIIDA-LDRAARLGHV 799
Query: 1004 EAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRA 1045
L V H + EEM +M+ Y EI + ++RA
Sbjct: 800 RLGLPVIHGHSDDLVEEMELMMDAYSEQLM-EIAKAHTQSRA 840
>gi|239614149|gb|EEQ91136.1| RNA-directed RNA polymerase [Ajellomyces dermatitidis ER-3]
Length = 1701
Score = 249 bits (637), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 193/631 (30%), Positives = 309/631 (48%), Gaps = 82/631 (12%)
Query: 300 LSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSFV 359
L V +QL + ++ ++ + ++ L L + A +L+ + K+I YDP+
Sbjct: 810 LPFSVRYQLEVCMSHRYINEYTIEETFVRRLVQLGEKKAKELLEHVAMNKTIYYDPMEIF 869
Query: 360 KTQLHVLGRNCKSIPL---SSHKRLIDHNVMSCY--RALVTPMKIYCLGPELETSNYVVK 414
+IP +++ R+ H CY A VTP I P ++TSN V +
Sbjct: 870 ------------NIPFPKGATNGRIPGH---CCYIRSADVTPSTICYDIPSVDTSNRVFR 914
Query: 415 NFAKYASDFMRVTFVEEDW--SKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVI 472
++A F+RV F +E + P N+ ++ K+Y+R+L LQ GI I
Sbjct: 915 YHREHADRFLRVRFCDEKYIGKIYPNNSGNSQCME---------KVYARVLRTLQHGITI 965
Query: 473 GDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSS 532
GD+ YEFLAF SQLR + + FAS ++A ++R MG N IR V+K AAR+GQ FS+
Sbjct: 966 GDRRYEFLAFGNSQLREHGAYFFASLPHLTAANIRAQMGDLNNIRVVAKYAARLGQCFST 1025
Query: 533 SKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGL----SHTPSA 588
++ PVQ ++ I D+E N Y FSDG+G++S + + G+ PS
Sbjct: 1026 TRAVTSCPVQ-IKKIDDIE----RNGYVFSDGVGRLSHFLTQMIQSDLGIKTPSGEPPSV 1080
Query: 589 FQIRYGGYKGVIAVDRNSF-RKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLL 647
FQ R GG KG++AV + R++ +RRS KF + + L + ++S LNR++I +L
Sbjct: 1081 FQFRLGGCKGILAVSPEARQREVHIRRSQFKFPASHNGLEIIRYSHFSYATLNRQLILIL 1140
Query: 648 STLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKN---ILVKMLLQGYEP 704
S LG DEVF A L L + + + + A+ +LQK VD +L M+ G++
Sbjct: 1141 SALGTPDEVFIAKLSMMLANLEQAMTDEDKAVSLLQKY--VDPNQMTLVLADMIRDGFQG 1198
Query: 705 NVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILN--YGQVFVRVTMTR 762
+ EP++S +L Q+ LK + +I + +G L+GC DET L + + T
Sbjct: 1199 SREPFVSSLLELWRTWQIKYLKEKAKIAIDEGAFLLGCIDETKTLKGYFRSARPKANSTY 1258
Query: 763 EELESKDQSFFHRV----DDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVD 818
+E F +V + K ++++G ++ +NP LHPGD+RV++A+ + EE+ D
Sbjct: 1259 QERVDCLPEIFVQVWRHSEGKYAVIEGLCILARNPSLHPGDIRVVKAIQFLSPEERPQFD 1318
Query: 819 CIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIM-DHDVTL 877
I SG I D L+ T+ M Y RIM H++
Sbjct: 1319 KRILK-----------SG---------IEVDEKLLSVATDLKMQYDTDMRRIMARHEIET 1358
Query: 878 E-EIHKFFV--------DYMINDTLGAISTA 899
E E+ FV DY ++ +G IS+A
Sbjct: 1359 ELEVWSTFVLSHSEMSNDYKFHEDIGRISSA 1389
>gi|308458494|ref|XP_003091586.1| hypothetical protein CRE_24272 [Caenorhabditis remanei]
gi|308255699|gb|EFO99651.1| hypothetical protein CRE_24272 [Caenorhabditis remanei]
Length = 1634
Score = 249 bits (636), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 240/843 (28%), Positives = 376/843 (44%), Gaps = 145/843 (17%)
Query: 391 RALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIF 450
+ ++TP + L PE +N ++ + +R T +++ K+ N L ++Q I
Sbjct: 449 KVILTPTRKIYLAPEKIMANRAIRGACHDGTRIIRATLRDDNLQKMRFNLLG-NLQGEI- 506
Query: 451 SKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASND---------EV 501
L L+DG I ++ + +LA S SQ+R + D E
Sbjct: 507 -----------TLGHLRDGFGIMERAFGYLASSNSQMREGGAYFMERYDAEQLAEYKEEH 555
Query: 502 SAEDV---------RGW--MGCFNKIRSVSKCAARMGQLFSSSK--QTLVVPVQDVEMIP 548
E V W +G F S+ K AR+GQ F+ ++ + + D +MIP
Sbjct: 556 PGEPVPHSFKPMIKEYWNVLGKFVDTGSIPKALARLGQCFTQARPIDNVSISPTDYKMIP 615
Query: 549 DV--EVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVD--- 603
D ++G Y ++DG+G IS A Q+ G+ H P AFQ R+ G+KG++A+D
Sbjct: 616 DAIGGKNTEGKPYMYTDGVGCISAGLAEQIFGSLGIKHVPCAFQFRFRGFKGMLAIDPNI 675
Query: 604 ---RNSFRKLSL---------RRSMLKFES--RNRMLNVTKWSESMPCFLNREIISLLST 649
N + L L R+S LKFES + + + KWS P LN+ I++L
Sbjct: 676 DHTANHWESLGLRYHRIKCLFRKSQLKFESCQEDEQMEMVKWSSPTPVTLNKPFINILDQ 735
Query: 650 L-GVKD-EVFEAMQQQQLILLGKMLINREAALDVLQK----LNGVDSKNILVKMLLQ-GY 702
+ G++ E + + + LL + N AA+ +K L G+ + M + G+
Sbjct: 736 VSGLQSLECHKRVSGRVEELLSMEMDNYSAAVVNEEKCREVLEGMPRRIHFASMERKNGF 795
Query: 703 EPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPK--GRLLIGCFDETGILNYGQVFVRVTM 760
+ EP+ ++ + ++ +S L + +I +P GR + G DETG L YGQVFVR T
Sbjct: 796 VLSTEPFFRSLVKATIDSAMSRLLRKLQIPIPGNLGRSMFGITDETGQLQYGQVFVRYT- 854
Query: 761 TREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCI 820
E + K S KT + GKVLVTK P L GDVR+ EAV +L D I
Sbjct: 855 --ENVNEKHPS----RHKKTITLTGKVLVTKFPSLCEGDVRMYEAVDIPELHH--LQDVI 906
Query: 821 IFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEI 880
+FPQ G R P+E +G DLDGD + + WD L + +Y+ + D EE+
Sbjct: 907 VFPQTGPRSQPDEMAGSDLDGDEYAVIWDPQLFFERNQKAFEYSSEKP---DQHFAAEEM 963
Query: 881 ----HKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTG-AP 935
H F+ +Y + +G S HL +D+ S C +A + MA+D+AK+G AP
Sbjct: 964 DDGFHWFYTEYAKQEDVGVTSINHLHQSDQ--FGINSDVCRSIAIKNGMALDYAKSGVAP 1021
Query: 936 AEMPLALKPKEFPDFMERE---------DKPRYISFGVLGKLYRATLDSIMQIRS-NAIW 985
+ + P+ ER P Y S +LG+LYR ++R N +
Sbjct: 1022 PPLTSVWSSEGPPERSERRPDYANNRYNGSPSYQSSRLLGQLYR-------ELRCVNDVC 1074
Query: 986 SE--KIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTG---N 1040
SE K + D L G+E F+ A H Y E+ ++M+ YG +TE EI +G
Sbjct: 1075 SEDSKQVPVAIDPLLTWQGWEEFVDGAHLHMTRYNAEVRSIMDTYGVATEAEIFSGCYRE 1134
Query: 1041 LRNRASYLQRDN------------------RRY----------GDMKDRILLSAKNLQN- 1071
+RNR S ++D+ R+Y GD L +N ++
Sbjct: 1135 IRNRHSEKEQDDMSIYDTESVIETQMTRVFRKYREQFFEEFAPGDNGYMRLTEVENPRDD 1194
Query: 1072 -EAKEWFGSSCKENEHPQLAS--AWYHVTYSPSY----CKERMALLSFPWIVGDILLNIK 1124
E K+ C++ +A A+Y Y+ + C+ LSF WI DIL ++
Sbjct: 1195 EEEKDVLRRVCRQPTGRMMAKAVAYYRDCYTAAQNSVDCR-----LSFAWIAYDILNTVR 1249
Query: 1125 SVN 1127
N
Sbjct: 1250 GKN 1252
>gi|296416873|ref|XP_002838094.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295633999|emb|CAZ82285.1| unnamed protein product [Tuber melanosporum]
Length = 1218
Score = 249 bits (635), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 230/803 (28%), Positives = 360/803 (44%), Gaps = 121/803 (15%)
Query: 394 VTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKP 453
+TP Y GP E N V++ + + F+RVTF EED L Q + P
Sbjct: 445 ITPAGCYFFGPLPEPQNRVLRKYPDHHEYFIRVTFCEEDGEPL-------LFQHKVDQSP 497
Query: 454 YRTKIY-SRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFA----SNDEVSAEDVRG 508
IY ++ L +GI I + +EFL FS+S LR S W A + + V
Sbjct: 498 ----IYKNQFRFYLSEGITIAGRKFEFLGFSSSSLRTQSCWFMAPFYLDGKYLDPKIVTS 553
Query: 509 WMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKI 568
+G F+ I K AAR+GQ FS + ++ V + IPDV +G T FSDG+G I
Sbjct: 554 RLGDFSSITCPGKYAARVGQAFSDTYGSIDVRAEHEVEIPDV--VRNGRT--FSDGVGTI 609
Query: 569 SLSFARQVAQKC-GLSHT-PSAFQIRYGGYKGVIAVD-RNSFRKLSLRRSMLKFE-SRNR 624
S +V ++ L T P+ FQIR+ G KGV+++D R K LR SM+KF S +R
Sbjct: 610 SQQLLDRVWRESESLRKTRPTVFQIRFAGAKGVVSLDTRLVGDKFCLRPSMIKFRGSSDR 669
Query: 625 MLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQK 684
+ + ++ +P +LNR +I +L +GV + F +Q++ + L + + A + L++
Sbjct: 670 KIEICNSADWLPMYLNRPLIKVLEDIGVFESTFMTLQKEAIEDLRQSTTSVANAANFLKR 729
Query: 685 LNGVDSKNILVKMLLQ-----GYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLL 739
+ S I + +++ G+ + +L L LK + RI V KG L
Sbjct: 730 QR-IASTAIRLPWVIESLNNLGFNFRDDHFLEQAFELSLITSLRSLKHKARIPVKKGMTL 788
Query: 740 IGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGD 799
+G DETG L GQ++V V +++D+S + + G+VL+T++P HPGD
Sbjct: 789 VGVMDETGYLQEGQIYVTV-------QARDKS-------TSESIAGRVLITRSPVHHPGD 834
Query: 800 VRVLEAVYEMKLEE----KDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPC 855
V++ A+ +L + +C+ FPQ+GER P+ DL + I +D
Sbjct: 835 VQMALAIGTNQLPPDSPLRALRNCVAFPQRGERDMPSMLGAPDL----YNIIYDARFSLK 890
Query: 856 ETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSK 915
T P +Y ++ + V +I FF+++M N+ LG IS+ HL+ AD+ +
Sbjct: 891 TTYDPAEYPKVPTKDLGRPVKTSDIVDFFLEFMENNLLGMISSRHLITADKKVEGVHHPD 950
Query: 916 CLHLATLHSMAVDFAKTG---APAEMPLALKPKEFPDFMEREDKPR-------------- 958
CL LA L S AVDF KTG + ++ P A K PDFM PR
Sbjct: 951 CLKLAELASTAVDFPKTGIKVSRSDFPKATFAK--PDFM--APGPRILIKRGPEFVEEDV 1006
Query: 959 ---------------YISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDG- 1002
Y S VLGKLYR ++ +++ + D V G
Sbjct: 1007 VPDDDDDDEDTPTLYYESEKVLGKLYREIDETAFLREVQGTVNKERRARNVDEGAVVLGI 1066
Query: 1003 -------------FEAFLGVAESHKEMYEEEMNALMNYYGAST------EDEILTGNLRN 1043
+E ++GVA KE YE + +M Y E E+ GN+
Sbjct: 1067 WEWLEEAIPSNYKWEDYIGVAAELKEAYEGNVERMMLNYSDMPWKYRLREVEVFIGNIVG 1126
Query: 1044 RASYLQRDNRRYGDMKDRI--LLSA--KNLQNEAKEWFGSSCKENEHPQLASAWYHVTYS 1099
+ QR M+D L S+ +++Q+E++E + + A +
Sbjct: 1127 KERQTQRQKDASSQMRDEFDRLASSIVESMQSESRE---------KTLGIGMASLSLCLP 1177
Query: 1100 PSYCKERMALLSFPWIVGDILLN 1122
K+ +L SF WI +LL
Sbjct: 1178 EKNWKDLDSLKSFTWIAVSVLLT 1200
>gi|393912446|gb|EFO21905.2| RNA dependent RNA polymerase [Loa loa]
Length = 1514
Score = 248 bits (633), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 223/794 (28%), Positives = 367/794 (46%), Gaps = 107/794 (13%)
Query: 382 IDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAK-YASDFMRVTFVEEDWSKLPANA 440
+ HN + + + TP+++ L PE+ +N V+++F + YA +R F +++ +L
Sbjct: 455 LPHNCVLIRKVMATPLRLLLLPPEVMMTNRVIRHFGEEYA---LRCVFRDDNGQRLVPKE 511
Query: 441 LSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFAS--- 497
S RG + I I L G+ I +HY+FLA+S SQ+R+ +M++
Sbjct: 512 FS----RGRALQDQSLIIPDLIYRTLGTGLHIASRHYQFLAWSNSQMRDGGCYMYSDAVV 567
Query: 498 NDEV------SAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVE 551
NDEV + ED+R WMG F +SV K +RMGQ F+ ++ T+++ D ++ D+
Sbjct: 568 NDEVHGQMICNVEDIRRWMGDFTASKSVPKMMSRMGQCFTQAQPTIMLEKNDWKVEDDIM 627
Query: 552 V----TSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSF 607
G + FSDG+G+IS +A ++A+ L TPS +Q
Sbjct: 628 GGIVHPETGEVFNFSDGVGRISKKYADRIAEVLDLHPTPSCYQ----------------- 670
Query: 608 RKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKD---------EVFE 658
+ E + V K+S P L+R +I +L + K
Sbjct: 671 ----------EDEESAAEIEVVKYSMPAPVCLSRPLIMILDQVSEKQSRHLHKKICSRIH 720
Query: 659 AMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKML-LQGYEPNVEPYLSMMLLSH 717
++ + +L L M+ + D ++L+ S I L G EP+ +L++
Sbjct: 721 SLLELELNKLSAMMFDEN---DAAEELSSRMSLPIDFHQLHSSGITFTNEPFFRSLLIAI 777
Query: 718 HENQLSDLKSRCRIYVPK--GRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHR 775
H + S+ +I++P G + G D+TG+L +GQVF++ + +
Sbjct: 778 HRYNIKLHLSKSKIFLPASMGHTMYGVVDDTGLLQHGQVFIQYSPS-----------IRY 826
Query: 776 VDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECS 835
V K I G V+VTKNPC GDVR+ EAVY+ L D I+FP+ G RPH +E +
Sbjct: 827 VSGKKIIYTGPVMVTKNPCHVAGDVRMFEAVYQDALSH--LCDVIVFPRYGPRPHCDEMA 884
Query: 836 GGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGA 895
G DLDGD + + +D +L E M + D T ++ FF+ Y+ D++G
Sbjct: 885 GSDLDGDEYTVIFDKELFFENNEQAMFFPKSIPTEYDTPPTTGDMIDFFLKYLSQDSIGR 944
Query: 896 ISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPK--EFPDFMER 953
+S AHL+ DR C +A ++AVDF KTG A+ PL L + PD+M+
Sbjct: 945 MSNAHLIMCDR--LGLFHEICDSIARKCAVAVDFPKTGVQAK-PLILHEQCDSIPDYMQN 1001
Query: 954 EDKPRYISFGVLGKLYRAT--LDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAE 1011
KP Y S +LG+LYR ++ I + A +++ YD L + +
Sbjct: 1002 TIKPSYRSKRLLGQLYRKAQKVEDISEAVQGAKFADYYDPQLYDESLFHEQPKLIQRSLR 1061
Query: 1012 SHKEMYEEEMNALMNYYGASTEDEILTGN--LRNRASYLQRDNRRYGDMKDRI--LLSAK 1067
E Y + L++ YG S E +++G+ R +++D+ + D+I L ++
Sbjct: 1062 LRNEYY-SRIQQLLDEYGISDEASVISGHSLAIKRIVEMEKDDYSFYH-SDKIVELRYSR 1119
Query: 1068 NLQNEAKEWFGSSCKENEHPQL-----------------ASAWYHVTYSPSYCKERMALL 1110
+E+F +E++ + A AWY VTY+ ++ +
Sbjct: 1120 IFAYFRREFFKEFGEESDFVSVDALGKRGMRWNMALITKAKAWYAVTYASAF-RSSSEFR 1178
Query: 1111 SFPWIVGDILLNIK 1124
SFPWIV DILL IK
Sbjct: 1179 SFPWIVWDILLIIK 1192
>gi|409080815|gb|EKM81175.1| hypothetical protein AGABI1DRAFT_56593 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1176
Score = 248 bits (632), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 205/716 (28%), Positives = 337/716 (47%), Gaps = 77/716 (10%)
Query: 304 VLFQLNSLVHNQKV------SLVAADAELIQILSGLSMETALMVLQK-LHKLKSICYDPV 356
V FQL SL+ N + L+ EL+ L + L K +H L D +
Sbjct: 307 VAFQLESLLRNMDIDTTELLGLLPRVDELVNSYGSLYVADLLKTFSKRVHSLIHDRRDTL 366
Query: 357 SFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNF 416
+ V + L + S+ L+D + + A+VTP I GP E SN V++ +
Sbjct: 367 NVVISCLDSCHEEVMKLGNSTSPLLVDEALCQTFHAMVTPTTILLTGPFPERSNRVIRRY 426
Query: 417 AKYASD-FMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDK 475
K D F+RV F EED L + R + R + RI IL++ IVI +
Sbjct: 427 GKRNEDNFLRVEFREED-------GLQYRLDRDVNG---RASLRHRISPILKEKIVIAGR 476
Query: 476 HYEFLAFSASQLRNNSVWM---FASND--EVSAEDVRGWMGCFNK-------IRSVSKCA 523
++FLA+S S LR +SVW F +D EV A + +G F+ I ++ A
Sbjct: 477 SFDFLAYSQSALREHSVWFCRPFVDSDLGEVDAARIIQDLGTFDNLSYDKELINCPARYA 536
Query: 524 ARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQ----- 578
AR+ Q F+++ + V++ ++ D++ ++ Y F+DG G +S FAR++ Q
Sbjct: 537 ARLSQAFTAT-EAATFRVEEPQIRKDIK--TNDKQYIFTDGCGCMSEDFAREIWQTMHPK 593
Query: 579 -KCGLSHTPSAFQIRYGGYKGVIAVDRN--SFRKLSLRRSMLKFES--RNRMLNVTKWSE 633
+ P A+QIRY G KG+++VD R +R SM+KF++ + V
Sbjct: 594 GRDSEEDFPRAYQIRYAGSKGMLSVDYKLKGSRTFVVRPSMIKFDAPEAKEIEIVRGIKN 653
Query: 634 SMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSK-- 691
P + NR +I LL LGV +V + Q + + + + A+D+L+ +G+ S
Sbjct: 654 PTPYYFNRPLIMLLEGLGVNYDVLQHFQDKAVAKTQDATLALQDAIDLLEN-HGLGSSFR 712
Query: 692 --NILVKMLLQGYEP-NVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGI 748
+ + ++ G + + + +L + L DLK+ RI +P L+G DE
Sbjct: 713 RPSTMQNIIQLGIDALQSDAFYGRLLRVAVYHALRDLKNNARIPIPDAWTLVGVADEHNF 772
Query: 749 LNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYE 808
L ++F + + D + ++G VLV+++PC+HPGDV+V+ A+
Sbjct: 773 LGKNEIFACIKKS---------------DGEMIYLEGHVLVSRSPCIHPGDVQVVSAIGR 817
Query: 809 MK----LEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFI---SWDNDLIPCETEPPM 861
E + + ++F KG RP P+ GGDLDGDI+ + + L P P
Sbjct: 818 PPKGSCFEVESLQNTVVFSTKGNRPIPSCLGGGDLDGDIYNLLPLAVHKSLTPLRYFKPG 877
Query: 862 DYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLAT 921
YT + +D T++++ F ++Y+I+D +G ++ LV AD+ + CL LA
Sbjct: 878 KYTSGERKCLDKPSTMKDVADFVMEYIISDVIGLVANRWLVIADQSQFGIQDRVCLRLAQ 937
Query: 922 LHSMAVDFAKTGAP---AEMP---LALKPKEFPDFMEREDKPRYISFGVLGKLYRA 971
LHS AVD+ KTG P AE+P L P+ ++ + Y S +G+L RA
Sbjct: 938 LHSDAVDYPKTGNPVSVAEIPKLKFPLPDWSAPETVDPDPVNYYPSQSAVGRLSRA 993
>gi|312079416|ref|XP_003142164.1| RNA dependent RNA polymerase [Loa loa]
Length = 1486
Score = 248 bits (632), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 223/794 (28%), Positives = 367/794 (46%), Gaps = 107/794 (13%)
Query: 382 IDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAK-YASDFMRVTFVEEDWSKLPANA 440
+ HN + + + TP+++ L PE+ +N V+++F + YA +R F +++ +L
Sbjct: 427 LPHNCVLIRKVMATPLRLLLLPPEVMMTNRVIRHFGEEYA---LRCVFRDDNGQRLVPKE 483
Query: 441 LSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFAS--- 497
S RG + I I L G+ I +HY+FLA+S SQ+R+ +M++
Sbjct: 484 FS----RGRALQDQSLIIPDLIYRTLGTGLHIASRHYQFLAWSNSQMRDGGCYMYSDAVV 539
Query: 498 NDEV------SAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVE 551
NDEV + ED+R WMG F +SV K +RMGQ F+ ++ T+++ D ++ D+
Sbjct: 540 NDEVHGQMICNVEDIRRWMGDFTASKSVPKMMSRMGQCFTQAQPTIMLEKNDWKVEDDIM 599
Query: 552 V----TSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSF 607
G + FSDG+G+IS +A ++A+ L TPS +Q
Sbjct: 600 GGIVHPETGEVFNFSDGVGRISKKYADRIAEVLDLHPTPSCYQ----------------- 642
Query: 608 RKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKD---------EVFE 658
+ E + V K+S P L+R +I +L + K
Sbjct: 643 ----------EDEESAAEIEVVKYSMPAPVCLSRPLIMILDQVSEKQSRHLHKKICSRIH 692
Query: 659 AMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKML-LQGYEPNVEPYLSMMLLSH 717
++ + +L L M+ + D ++L+ S I L G EP+ +L++
Sbjct: 693 SLLELELNKLSAMMFDEN---DAAEELSSRMSLPIDFHQLHSSGITFTNEPFFRSLLIAI 749
Query: 718 HENQLSDLKSRCRIYVPK--GRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHR 775
H + S+ +I++P G + G D+TG+L +GQVF++ + +
Sbjct: 750 HRYNIKLHLSKSKIFLPASMGHTMYGVVDDTGLLQHGQVFIQYSPS-----------IRY 798
Query: 776 VDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECS 835
V K I G V+VTKNPC GDVR+ EAVY+ L D I+FP+ G RPH +E +
Sbjct: 799 VSGKKIIYTGPVMVTKNPCHVAGDVRMFEAVYQDALSH--LCDVIVFPRYGPRPHCDEMA 856
Query: 836 GGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGA 895
G DLDGD + + +D +L E M + D T ++ FF+ Y+ D++G
Sbjct: 857 GSDLDGDEYTVIFDKELFFENNEQAMFFPKSIPTEYDTPPTTGDMIDFFLKYLSQDSIGR 916
Query: 896 ISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPK--EFPDFMER 953
+S AHL+ DR C +A ++AVDF KTG A+ PL L + PD+M+
Sbjct: 917 MSNAHLIMCDR--LGLFHEICDSIARKCAVAVDFPKTGVQAK-PLILHEQCDSIPDYMQN 973
Query: 954 EDKPRYISFGVLGKLYRAT--LDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAE 1011
KP Y S +LG+LYR ++ I + A +++ YD L + +
Sbjct: 974 TIKPSYRSKRLLGQLYRKAQKVEDISEAVQGAKFADYYDPQLYDESLFHEQPKLIQRSLR 1033
Query: 1012 SHKEMYEEEMNALMNYYGASTEDEILTGN--LRNRASYLQRDNRRYGDMKDRI--LLSAK 1067
E Y + L++ YG S E +++G+ R +++D+ + D+I L ++
Sbjct: 1034 LRNEYY-SRIQQLLDEYGISDEASVISGHSLAIKRIVEMEKDDYSFYH-SDKIVELRYSR 1091
Query: 1068 NLQNEAKEWFGSSCKENEHPQL-----------------ASAWYHVTYSPSYCKERMALL 1110
+E+F +E++ + A AWY VTY+ ++ +
Sbjct: 1092 IFAYFRREFFKEFGEESDFVSVDALGKRGMRWNMALITKAKAWYAVTYASAF-RSSSEFR 1150
Query: 1111 SFPWIVGDILLNIK 1124
SFPWIV DILL IK
Sbjct: 1151 SFPWIVWDILLIIK 1164
>gi|145547505|ref|XP_001459434.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|74830373|emb|CAI39057.1| RNA-dependent RNA polymerase [Paramecium tetraurelia]
gi|124427259|emb|CAK92037.1| unnamed protein product [Paramecium tetraurelia]
Length = 1331
Score = 248 bits (632), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 206/641 (32%), Positives = 323/641 (50%), Gaps = 80/641 (12%)
Query: 382 IDHN----VMSCYRALVTPMK-IYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKL 436
ID N V R +TP I+ L ETS +++ + +F+R+ F +E+
Sbjct: 502 IDQNEQKRVAMIKRVSLTPSGYIFNLKLPEETSE-IIRQYYNQLDNFIRLHFEDENLE-- 558
Query: 437 PANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFA 496
I Y T+ Y + + L +G+ + + + L +SASQLR S W+F
Sbjct: 559 -----------TIHGHHYITEYYFK--SKLSNGLHLLGEQFRLLTWSASQLRGGSCWIFN 605
Query: 497 SND-EVSAEDVRGWMGCFNKIR--SVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVT 553
N ++S ++ +G FN + V+K AAR+GQ FSSSK + + +PD +V
Sbjct: 606 YNRAQISRQNFIDSIGNFNTLNMDQVAKNAARLGQNFSSSKSIDLRQIIVKTQVPD-KVG 664
Query: 554 SDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRN-SFRKLSL 612
+G Y +DGIGKIS + + + +HT SA Q+RY G KGV+ ++ + + L
Sbjct: 665 DNGKLY--TDGIGKISRNLIEMIRVEMN-NHTISAIQVRYHGAKGVLLLNDDLPDNTIEL 721
Query: 613 RRSMLKFE-------SRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQL 665
R+SM+KF + M+++ +++ +LNR+II LL TLG+++EVF +Q++ L
Sbjct: 722 RKSMIKFNPTLMNDGNYKTMISLLDYNKFRGGYLNRQIIILLVTLGIQEEVFMQLQREYL 781
Query: 666 ILLGKML-----INREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEP-YLSMMLLSHHE 719
+ + I +D +L G+ S ++M++ Y+ +L
Sbjct: 782 HKIANLSAVDSSIYNHFLVDYNGELQGLPSIIDNIRMMINANLNENNNHYIKRVLDRLKR 841
Query: 720 NQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDK 779
L L+++ I + + ++G D+ IL+ G+V V + ++ L D
Sbjct: 842 RGLMQLRTKSNILMDQAARVLGVVDDYDILDQGEV---VCIVKQSL-----------DVN 887
Query: 780 TSIVKGKVLVTKNPCLHPGDVRVLEAV--------YEMKLEEKDYVDCIIFPQKGERPHP 831
+ G+++V +NPCLHPGD+R + A+ Y MK +Y +CI+FP KG P
Sbjct: 888 HKYITGEIIVVRNPCLHPGDIRKVRALSENEILSRYNMKNPFAEYYNCIVFPCKGNSI-P 946
Query: 832 NECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRS-------------RIMDHDVTLE 878
+C GGDLDGDI+F+SWD +IP TE PM+Y + I D E
Sbjct: 947 ADCGGGDLDGDIYFVSWDPKVIPKTTEYPMNYDEEKKPAVVVSKQIQAQGYISAEDFFQE 1006
Query: 879 -EIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAE 937
++ +F ++Y+ D LG I +HL AD PD A+ KC+ LA LHS AVD+ K G E
Sbjct: 1007 NKMIEFLLEYLNFDVLGKIDNSHLAIADGSPDYAKDPKCIRLAELHSAAVDYVKHGNKVE 1066
Query: 938 MPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQ 978
+P L K +PDFME+ D Y S +LGKLYR L I Q
Sbjct: 1067 IPNNLVTKRWPDFMEK-DSMVYESTSILGKLYREVLQCINQ 1106
>gi|367034442|ref|XP_003666503.1| hypothetical protein MYCTH_2071684 [Myceliophthora thermophila ATCC
42464]
gi|347013776|gb|AEO61258.1| hypothetical protein MYCTH_2071684 [Myceliophthora thermophila ATCC
42464]
Length = 1182
Score = 247 bits (630), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 202/637 (31%), Positives = 299/637 (46%), Gaps = 92/637 (14%)
Query: 390 YRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGI 449
+R +VTP + GPELE N V++ F + S F+R F +E + L N
Sbjct: 426 FRVVVTPTSVLLHGPELEPMNRVLRKFPNH-SYFIRAQFCDEAGNDLFFN---------- 474
Query: 450 FSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWM----FASNDEVSAED 505
SK +IY+R +IL DGI I + Y+ L FS S LR +S W+ F N +
Sbjct: 475 -SKVSLDRIYNRFKSILSDGIQIAGRVYKLLGFSHSSLRAHSAWLSAPFFHQNQRHGPDF 533
Query: 506 VRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEM--IPDVEVTSDGNTYCFSD 563
+ +G FN IRS ++ AAR+GQ FS + L + +++ IPDVE N FSD
Sbjct: 534 IIETLGDFNDIRSPARRAARIGQAFSETPWALDLDEYGIQVSRIPDVE----RNGRVFSD 589
Query: 564 GIGKIS---LSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDR-NSFRKLSLRRSMLKF 619
GIG IS LS +V K P+ QIR+ G KG++A+D R++ +R SM+KF
Sbjct: 590 GIGTISHDALSAVYKVIPKS--KGFPTCLQIRWAGAKGMLALDPLLEGRRICIRDSMIKF 647
Query: 620 ESRNRMLNVTKW-SESMPCFLNREIISLLSTLGVKDEVFEAMQQ---QQLILLGKMLINR 675
S ++ L + S MP LNR++I +L + DE F +Q Q+L + + N
Sbjct: 648 ASNDKQLEICDMASRPMPMVLNRQLIKILEDMKAPDEWFLNLQSTELQRLRGISATVYNT 707
Query: 676 EAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPK 735
+ + + + + + L + G + + +L + +L LK + RI V +
Sbjct: 708 ASFIRMQKVAESIKLHDFLRQTEAMGIDYRQDSFLRGAVEIILLRELRLLKHKSRIPVRE 767
Query: 736 GRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCL 795
G L G DETG L GQV+ VT EE G +LVT++P L
Sbjct: 768 GITLFGVMDETGFLKEGQVY--VTFDTEEGRYAQPP-----------EPGPLLVTRSPAL 814
Query: 796 HPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI-P 854
HPGD G R P++ SGGDLDGD+F + WD +++
Sbjct: 815 HPGDW-------------------------GSRDLPSQLSGGDLDGDVFHVIWDPEVVGA 849
Query: 855 CETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSS 914
T P DY ++ VTL +I FFVD+M D LG I+ H++ AD+ D R
Sbjct: 850 LTTYQPADYGRTTPPELNRPVTLADIASFFVDFMKTDQLGVIAIRHMILADQKEDGTRDQ 909
Query: 915 KCLHLATLHSMA--VDFAKTGAPAEMP----LALKP---KEFPDFMEREDKPRYISFG-- 963
C+ LA LHS A DF G + ++L +E D + E +PRY +
Sbjct: 910 NCIALAELHSSAWRPDFLAPGPSITVHDKSNISLDDHVVQEDSDSEDEEGQPRYGYYKSE 969
Query: 964 -VLGKLYRAT---------LDSIMQIRSNAIWSEKIA 990
++G+LYRA + I++ R + W E +A
Sbjct: 970 RIIGQLYRAVDERKIWSKDIKMIIKPRGPSFWDEMLA 1006
>gi|341880675|gb|EGT36610.1| hypothetical protein CAEBREN_29614 [Caenorhabditis brenneri]
Length = 1669
Score = 245 bits (626), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 216/872 (24%), Positives = 385/872 (44%), Gaps = 169/872 (19%)
Query: 391 RALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIF 450
+ + TP ++ + PE N V++ + + +R+TF ++D K+ N ST +++ +
Sbjct: 508 KIIFTPTRVIYVAPETLMGNRVLRRYDHDGTRVLRITFRDDDNQKMRTNKTSTLLEKTVN 567
Query: 451 SKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFAS------------- 497
+ L GI + +++ +L S SQ+R+N +
Sbjct: 568 N-------------YLHSGITVAGRNFGYLGSSNSQMRDNGAYFMEKYSSSQCREYEAIH 614
Query: 498 --------NDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPD 549
N ++ A R +G F I ++ K AR+GQ F+ S+ + V + +
Sbjct: 615 HVKPPITYNPKIQA--ARKNLGRFETIDNIPKMMARLGQCFTQSRLS-GVNLDRCTYMTM 671
Query: 550 VEVTSDGNT----YCFSDGIGKISLSFARQVAQKCGLSH-TPSAFQI---RYGGYKGVIA 601
++T N Y FSDG+G +SL FA+ V+Q PS FQ+ + +
Sbjct: 672 YDLTGGKNIKRDEYTFSDGVGMMSLRFAQMVSQVMDFGKGVPSCFQVFLNPIAPKTPIFS 731
Query: 602 VDRNSFRKLSL-------------------RRSMLKFESRNR---MLNVTKWSESMPCFL 639
+ RK SL R S +KF S+ + + K+S +P L
Sbjct: 732 PLLDMIRKWSLEFALEKPSDDVAWGLNCVFRPSQIKFISKRHPRDQVEIVKYSSPVPVSL 791
Query: 640 NREIISLLSTLGVKDEV---------FEAMQQQQLILLGKMLINREAALDVLQKLNGVDS 690
N+ I++L + + E + +Q++L + +++ + L++L
Sbjct: 792 NKPFINILDQVSEMQSLECHRRVTNRIEELLDRQMLLFAQQMVDETFCRNRLKEL----P 847
Query: 691 KNILVKMLLQ--GYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPK--GRLLIGCFDET 746
+ + + L G+ + EP+ ++ + + ++ + +I +P+ GR ++G DET
Sbjct: 848 RRVDIDYLRTTWGFTLSSEPFFRSLIKASIKFSITKQLRKEQIPIPQDLGRSMLGVVDET 907
Query: 747 GILNYGQVFVRVTMTRE-ELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEA 805
G L YGQ+FV+ T +L K+ + ++ G VL+TKNPC+ GDVR+ EA
Sbjct: 908 GRLQYGQIFVQYTKNLALKLPPKNAA--------RQVLTGTVLLTKNPCIVAGDVRIFEA 959
Query: 806 VYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTG 865
V +L D ++FPQ G RPHP+E +G DLDGD + I WD L+ + E P D+T
Sbjct: 960 VDIPELHH--MCDVVVFPQHGPRPHPDEMAGSDLDGDEYSIIWDQQLLLDKNEDPFDFTS 1017
Query: 866 RRSRIMDHDVTLEEIHK-FFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHS 924
+ + + ++++ + F+V Y+ D++G IS +HL ++D+ AR C+ LA +
Sbjct: 1018 EKQKSSFKEEEIDDLMREFYVKYLKLDSVGTISNSHLHNSDQYGLNARV--CMDLAKKNC 1075
Query: 925 MAVDFAKTGAP--------------AEMPLALKPKEFPDF-MEREDKPRYISFGVLGKLY 969
AVDF K+G P EM + + PD+ M + P Y+S + GKL+
Sbjct: 1076 QAVDFTKSGQPPDELERKWRKDEETGEMIPPERCERVPDYHMGNDHTPMYVSPRLCGKLF 1135
Query: 970 R--ATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEE-----MN 1022
R +D +++I ++ E S D ++ ++G+E+++ A Y + ++
Sbjct: 1136 REFKAIDDVLKISEE---RDEQVEISIDENIMMEGYESYMHSARDELSRYNAQLRVSFLD 1192
Query: 1023 ALMNYYGASTEDEILTG---NLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWF-- 1077
++M YG TE E+ +G ++RNR S +D+ + + I NL + +E F
Sbjct: 1193 SMMENYGIKTEGEVFSGCIVDMRNRISDKDQDDMSFYNTNQMIETKVTNLFKKYREHFFE 1252
Query: 1078 ----------------GS-------SCKENEHPQL--ASAWYHVTY---SPSYCKERM-- 1107
GS C+ + A AWY Y +P C +
Sbjct: 1253 EFEGGWEANTESSSRIGSDANILQRQCRAPTQKMMRKAVAWYRACYGTKNPQKCIHNLIK 1312
Query: 1108 -----------ALLSFPWIVGDILLNIKSVNS 1128
LSF WI D++ +K S
Sbjct: 1313 FLEEARITRENKKLSFAWIAFDVIAMVKQTRS 1344
>gi|393247829|gb|EJD55336.1| RdRP-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 1217
Score = 245 bits (625), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 197/650 (30%), Positives = 310/650 (47%), Gaps = 84/650 (12%)
Query: 368 RNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVT 427
+ K PL++H + + + ++TP ++ GPE E SN V++ +A+ F+RVT
Sbjct: 408 QESKMTPLAAHD-----SPLQVQKIIITPTRVKLSGPEPEQSNRVLRRYAENIDAFLRVT 462
Query: 428 FVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQL 487
F + D S R + T + S + L++GI I + +EFLA+S+S L
Sbjct: 463 FADND-------EYSYHYDREV---DIPTFVKSAVGIPLKNGITIAGRKFEFLAYSSSAL 512
Query: 488 RNNSVWMFASNDEV------SAEDVRGWMGCFNKIR-SVSKCAARMGQLFSSSKQTLVVP 540
+ +SVW E +A+ +R +G F K + ++ ARM Q FS++ + V
Sbjct: 513 KEHSVWFVTPFVEEKTGTYHTAKTIRDSLGDFEKEKYCAARLGARMAQAFSATDPS--VE 570
Query: 541 VQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQV----------AQKCGLSHTPSAFQ 590
V+++ + D+ S G C SDG+G +S F+ QV ++ PSAFQ
Sbjct: 571 VEEILPLDDIPKASSG-PQCMSDGVGTMSRDFSEQVWEALESRRNKGRRGKNRPAPSAFQ 629
Query: 591 IRYGGYKGVIAVD-RNSFRKLSLRRSMLKFESRN-RMLNVTK-WSESMPCFLNREIISLL 647
IRY G KG+++VD + + LR SM+KFE N R L + + ++ +LNR +I LL
Sbjct: 630 IRYKGAKGMLSVDYKLKGSVICLRPSMIKFEDLNSRELEIARAFNTPARMYLNRPLIVLL 689
Query: 648 STLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQK---------------LNGVDSKN 692
LGVK +VF +QQ L + K + + A +L+ L+ + K+
Sbjct: 690 EGLGVKPDVFMNLQQAALEDIHKAAGSLDTAARMLESHGLGAAFRLPSLFTSLHKLRDKH 749
Query: 693 ILVKMLLQGYEPNVEPYLSMMLLSHHENQLS-DLKSRCRIYVPKGRLLIGCFDETGILNY 751
+ LL E +L N + +LK + RI VP L+G D L
Sbjct: 750 SAISELL------AEDDFFRRVLDFAINHIRRELKYKARIPVPDSWTLVGVVDVHDYLKE 803
Query: 752 GQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYE--- 808
G++F V R K ++G +L+T++P +HPGDV+V+ A+
Sbjct: 804 GEIFAAVKP--------------RDAKKPFYLQGPMLITRSPVIHPGDVQVVRAIGRPPP 849
Query: 809 -MKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRR 867
++ +C++F KG+R + GGD DGDI+ I +L P PP +Y +
Sbjct: 850 GSPFVHEELPNCVVFSIKGKRSLASCLGGGDYDGDIYNICPLTELHPKSCHPPAEYAPGQ 909
Query: 868 SRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAV 927
+I+D +E+I F +Y+ +D LG IS L+ AD C LA LHS AV
Sbjct: 910 RKILDRPCGIEDIADFVTEYINSDLLGHISVNWLLIADASERGIFHPDCFKLAQLHSDAV 969
Query: 928 DFAKTGAPAEMPLALKPKEF--PDFMERE----DKPRYISFGVLGKLYRA 971
D+ KTG P +PK+ PD+ E DK Y+S LG+L+RA
Sbjct: 970 DYPKTGMPVPHKDIPQPKQGVRPDWQASELKEHDKDHYVSQRALGQLFRA 1019
>gi|308469043|ref|XP_003096761.1| hypothetical protein CRE_23681 [Caenorhabditis remanei]
gi|308241452|gb|EFO85404.1| hypothetical protein CRE_23681 [Caenorhabditis remanei]
Length = 1721
Score = 243 bits (621), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 234/869 (26%), Positives = 380/869 (43%), Gaps = 177/869 (20%)
Query: 391 RALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIF 450
+ ++TP +I L PE +N + + +R TF ++++ K+ N L
Sbjct: 482 KVILTPTRIIFLAPETIMANRAINGADHDGTRIIRATFRDDNFQKMRYNQL--------- 532
Query: 451 SKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFAS-NDEVSAE----- 504
R + R L L+DG VI + + +LA S SQ+R+ + N AE
Sbjct: 533 ----RDLLEERTLNHLRDGFVIYGRGFSYLASSNSQMRDGGAYFMERWNKTQLAEYKERY 588
Query: 505 ---------------DVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPV--QDVEMI 547
D R +G F+K S+ K AR+GQ F+ +++ V + QD MI
Sbjct: 589 PRIRFPDPSFKPKIIDYRKKLGKFSKTGSIPKAMARLGQCFTQARRCDGVEICLQDYTMI 648
Query: 548 PDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDR--- 604
V+ Y F+DG+G IS A ++ Q + PSA+QIR+ G KG++A++
Sbjct: 649 --VDAVGGAGQYKFTDGVGCISARLAAKICQSISIKCLPSAYQIRFRGLKGMLAIEPSID 706
Query: 605 -------NSFRK-------------------LSLRRSMLKFES-RNRM----LNVTKWSE 633
N +RK R S LKF S R ++ + + KWS
Sbjct: 707 EIADYFLNIYRKGFMIKESIESADLEPYTFKCLFRGSQLKFHSSRGKVEEWPIEMVKWSS 766
Query: 634 SMPCFLNREIISLLSTLGVKDEV---------FEAMQQQQLILLGKMLINREAALDVLQK 684
P LN+ I++L + + E + +++ K ++N E + +
Sbjct: 767 PTPVTLNKPFINILDQVSAMQSLKCHKRVTARIEELLSMEMVNYSKWIVNEEQCRN---R 823
Query: 685 LNGVDSKNILVKMLLQ-GYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPK--GRLLIG 741
L G+ + + + G+ + EP+ ++ + ++ +S L + +I +P GR + G
Sbjct: 824 LEGMPRRVHFATLERKYGFVLSAEPFFRSIVKAAIDSSMSRLLRKLQIPIPSHLGRSVFG 883
Query: 742 CFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVR 801
DETG L YGQVFVR T E +++K + D + + GKVLVTK P L GDVR
Sbjct: 884 VVDETGQLQYGQVFVRYT---ENVDNKSP-----LKDFGTTLTGKVLVTKFPSLCEGDVR 935
Query: 802 VLEAV-----YEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCE 856
+ EAV Y +K D I+FPQ G R P+E +G DLDGD + + WD +L
Sbjct: 936 MYEAVDIPELYHLK-------DVIVFPQTGPRSQPDEMAGSDLDGDEYAVIWDAELFFER 988
Query: 857 TEPPMDYTGRRSRI------MDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDK 910
EP Y+ + + MDH + L F+ +YM + +G ST HL +D+
Sbjct: 989 NEPAFAYSSEKPEVPFTSSEMDHKMNL-----FYAEYMKQEDVGVTSTNHLHQSDQ--FG 1041
Query: 911 ARSSKCLHLATLHSMAVDFAKTGAPAEMPLAL-----------KPKE----FPDFMERE- 954
S C +A ++MA+D++K+G A PL +P E PDF
Sbjct: 1042 INSDVCNAIAVKNAMALDYSKSGV-APPPLTSEWTFNHVTGINEPPERSERRPDFAANRY 1100
Query: 955 -DKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESH 1013
Y S +LG+L+R L + + +++ S K D L +E + VA
Sbjct: 1101 NGNVSYQSSRLLGQLHRE-LRCVNDVLASS--SAKQVPIEIDPLLVWKRWEKYAEVARVQ 1157
Query: 1014 KEMYEEEMNALMNYYGASTEDEILTG---NLRNRASYLQRDN------------------ 1052
Y ++ ++M+ +G +TE EI +G +RNR S ++D+
Sbjct: 1158 MIRYNGQLRSIMDTFGINTEAEIFSGCYREIRNRHSEREQDDMSLYNTETIIETQMTEIY 1217
Query: 1053 RRYGDMKDRILLSAKN------------LQNEAKEWFGSSCKENEHPQLAS--AWYHVTY 1098
R+Y + L +N + ++ K+ C+E + +A A+Y V Y
Sbjct: 1218 RKYREQFFAEFLEGENAYMRLTEVENSRMSDDEKDVLRRVCREPNNKMMAKAVAYYRVCY 1277
Query: 1099 SPSYCKERMALLSFPWIVGDILLNIKSVN 1127
+ + K LSF WI DIL ++ N
Sbjct: 1278 AAAQ-KTGDQKLSFAWIAYDILNTVRQKN 1305
>gi|358384596|gb|EHK22193.1| hypothetical protein TRIVIDRAFT_149633 [Trichoderma virens Gv29-8]
Length = 1731
Score = 242 bits (618), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 163/475 (34%), Positives = 249/475 (52%), Gaps = 44/475 (9%)
Query: 465 ILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAA 524
+L+ GI I HY F S SQL++ + ++ A++ E A+ V +G F K+++V+K A
Sbjct: 123 LLRAGITIQGVHYNFYGHSNSQLKSRTCYLCAASKEQIAQKVEA-LGDFTKMKTVAKKAK 181
Query: 525 RMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLS- 583
R+G LFS ++ + V + VE IPD+EV + F+DG G I+ A Q++++ ++
Sbjct: 182 RIGLLFSVARAAMQVDPKKVEDIPDIEV----GDFIFTDGCGLIAPGLASQLSRRIKIAF 237
Query: 584 ----HTPSAFQIRYGGYKGVIAVDRNSFRK---LSLRRSMLKFESRNRMLNVTKWSESMP 636
+TPS FQIRY GYKGV+ +D + L +R+SM KF + + +S +
Sbjct: 238 RNMRYTPSVFQIRYRGYKGVVTLDPTMAKGGPWLKMRKSMKKFSGGDDL----SFSPYVF 293
Query: 637 CFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVD-SKNILV 695
LN E+I LL LG+ + QQ+ L K + A +L LN + ++ +++
Sbjct: 294 GNLNDEVIVLLDALGISRQTLLRKQQEHFDFLAKAYKDPRVAFRILCHLNMPEVAERVII 353
Query: 696 KMLLQGYEPNVEPYLSMMLLSHHENQLSDL-KSRCRIYVPKGRLLIGCFDETGILNYGQV 754
L V P ++ ++ + ++ L+ + +CRI +PK RLL G D G+L GQ
Sbjct: 354 DSL-----DAVRPKINKLINAEYDKMLNKRDEQKCRILIPKSRLLFGVCDAWGVLKPGQC 408
Query: 755 FVRVTMTREELESKDQSFFHRVDDKTSIVKG-KVLVTKNPCLHPGDVRVLEAVYEMKLEE 813
V+VTM D + +KG KVLVT+NPCLHPGD++ L+ V +L
Sbjct: 409 AVKVTMDG--------------DGQPYALKGMKVLVTRNPCLHPGDLQKLDVVERPELAH 454
Query: 814 KDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDH 873
VDCI+FP G RP + SGGDLDGD FF++WD D+IP Y G R +
Sbjct: 455 --LVDCIVFPTTGRRPTADMMSGGDLDGDTFFVTWDPDIIPSTISQAAHYPGVREPLRFS 512
Query: 874 DVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVD 928
+T ++ +F Y N +LG + +L A A SS+C L L S VD
Sbjct: 513 PITDDDRLLYFAKY-TNASLGRVKNLYLKWA--RASNAMSSECQELNRLFSQCVD 564
>gi|358393899|gb|EHK43300.1| hypothetical protein TRIATDRAFT_294361 [Trichoderma atroviride IMI
206040]
Length = 1759
Score = 242 bits (617), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 162/475 (34%), Positives = 253/475 (53%), Gaps = 40/475 (8%)
Query: 466 LQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAAR 525
L+ GI I HY F S SQL++ + + A+ E ++ + G +G F K+++V+K A R
Sbjct: 124 LRTGISIQGVHYNFYGHSNSQLKSRTCYFLAAPKEQISKKIEG-LGDFTKMKTVAKKAKR 182
Query: 526 MGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKC----- 580
+G LFS ++ + V + VE IPD+EV Y F+DG G I+ + A++++++
Sbjct: 183 IGLLFSVARAAMKVDPKKVEDIPDIEV----GDYVFTDGCGLIAPALAKELSRRTRIIFR 238
Query: 581 GLSHTPSAFQIRYGGYKGVIAVDRNSFRK---LSLRRSMLKFESRNRM-LNVTKWSES-M 635
+ +TPS FQ+RY GYKGV+ +D + L +R+SM KF + + +V ++S+ +
Sbjct: 239 NMRYTPSVFQLRYRGYKGVVTLDPTMAKGGTWLKMRKSMKKFSGGDDLSFSVVEYSKPYV 298
Query: 636 PCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILV 695
LN E+I LL LGV ++ QQ+ L + + AA VL L D ++
Sbjct: 299 FGHLNDEVIVLLDALGVDRKILLRKQQEHFNFLAEAYQDPRAAFRVLCHL---DRPDLAE 355
Query: 696 KMLLQGYEPNVEPYLSMMLLSHHENQLSDL-KSRCRIYVPKGRLLIGCFDETGILNYGQV 754
++++ + +V P ++ ++ + ++ L+ + +CRI +PK RLL G D G+L GQ
Sbjct: 356 RVIIDSLD-SVRPSINRLINAEYDKMLNKRDEQKCRILIPKSRLLFGVCDAWGVLKPGQC 414
Query: 755 FVRVTMTREELESKDQSFFHRVDDKTSIVKG-KVLVTKNPCLHPGDVRVLEAVYEMKLEE 813
V+VTM VD +KG KVLVT+NPCLHPGD++ L+ V +L
Sbjct: 415 AVKVTMD--------------VDGLPYALKGTKVLVTRNPCLHPGDLQKLDVVERPELAH 460
Query: 814 KDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDH 873
VDCI+FP G RP + SGGDLDGD FF++WD D+IP Y G R +
Sbjct: 461 --LVDCIVFPTTGRRPAADMMSGGDLDGDTFFVTWDPDIIPSTISQAAHYPGVREPLRFA 518
Query: 874 DVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVD 928
+T ++ +F Y N +LG + +L A A +C L L S VD
Sbjct: 519 PITDDDRLLYFAKY-TNASLGRVKNLYLRWA--RATNAMRPECQELNRLFSQCVD 570
>gi|403177737|ref|XP_003336185.2| hypothetical protein PGTG_17766 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375173183|gb|EFP91766.2| hypothetical protein PGTG_17766 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 1297
Score = 241 bits (616), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 203/735 (27%), Positives = 343/735 (46%), Gaps = 127/735 (17%)
Query: 300 LSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSFV 359
L+ +L +L S + Q+ A+D Q+ SG H+ +++ P +
Sbjct: 407 LAERILIRLGSDLTQQQRPQPASDDRQGQVASG-------------HRNQNLLLFPAALA 453
Query: 360 KTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKY 419
H S +R+ + C +TP + GP E N +++ F +
Sbjct: 454 HKFQHAKAMVDVKTVQRSEERVQREGIFKCRTVTITPTSLVLDGPCAEQGNSILR-FYDF 512
Query: 420 ASDFMRVTFVEED-----WSK---LPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIV 471
S F+RV EED W + LP FS YR L + ++
Sbjct: 513 NSAFIRVALREEDGAPHRWDRNVDLPE----------FFSHRYRP---------LANCLL 553
Query: 472 IGDKHYEFLAFSASQLRNNSVWMFAS----NDEVSAEDVRGWMGCFNKIRSV-SKCAARM 526
+ + +EFL +SAS LR++ W + ++A +R +G F K+ ++ ++ AR+
Sbjct: 554 LAGRQFEFLCYSASALRSHQAWFVCPFIHRGELITATKIRNRIGSFPKVINIPARYMARV 613
Query: 527 GQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQV----AQKCGL 582
GQ F+++++ + + +++I DVE N F+DG+G ISLS A++V A G
Sbjct: 614 GQAFTTTRKAVTLQPSQIKLIEDVE----RNGSVFTDGVGTISLSLAKKVEHALAGPTG- 668
Query: 583 SHTP-----SAFQIRYGGYKGVIAVDRN-SFRKLSLRRSMLKFESRNRMLNVT-KWSESM 635
S P S +QIR GGYKG++++D + LR SM KFE + L++ K+
Sbjct: 669 SKPPTELQASCYQIRLGGYKGMLSLDTTLEGDIVRLRPSMKKFEGESYTLDIAEKFDRPF 728
Query: 636 PCFLNREIISLLSTLGVKDEVFEAMQQQQLILL----GKM----LINREAALDVLQKLNG 687
P FLNR++I +L LG+ +VF Q + + ++ G M L+ A L +
Sbjct: 729 PAFLNRQLIKILEDLGISGQVFLDAQAETVAMVENSQGSMNQSSLVMERAGLG-----SA 783
Query: 688 VDSKNILVKM--LLQGYEPN------VEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLL 739
V+ IL ++ L+ P V+ L ++ + + L +LK RI +P L
Sbjct: 784 VELPQILKQLGRLMDSDRPEEIRCSFVQDSLDLLAV----HCLRELKYNTRIPLPGSFNL 839
Query: 740 IGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGD 799
+G DE G L Q+FV + + + + +KG+ + ++PCLHPGD
Sbjct: 840 VGVADEDGCLLENQIFVPIQLPGQ---------------RKYCLKGRFAIARSPCLHPGD 884
Query: 800 VRVLEAVYEMKLEEK---DYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCE 856
++V+ A+ + + + V+C++FP G+R P+ +GGDLDGD++ I D ++P
Sbjct: 885 IQVVYAIGDPPVGSRRLASLVNCVVFPVIGKRSLPSCLAGGDLDGDLYTIITDPQMVPDS 944
Query: 857 TE--PPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSS 914
P Y + + + T+ + FF Y++++ +G I+ H + AD+ +
Sbjct: 945 RRIYQPGSYESGQMKTTESPCTIHDGIDFFFHYILDNIVGMIANKHTIIADQADEGVLDR 1004
Query: 915 KCLHLATLHSMAVDFAKTGAPAEMPLALKPK---EFPDFMERE--------DKPR----- 958
KCL LA LHS AVD+ KTG +P+ P+ + PDFM E DK +
Sbjct: 1005 KCLDLAELHSQAVDYPKTG--MAVPVTKIPRCSPKRPDFMCPEYMFNDHLSDKEKAQQAE 1062
Query: 959 --YISFGVLGKLYRA 971
Y S +LG+L+RA
Sbjct: 1063 RTYPSPKILGQLFRA 1077
>gi|328872313|gb|EGG20680.1| RNA-directed RNA polymerase [Dictyostelium fasciculatum]
Length = 2876
Score = 241 bits (614), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 226/786 (28%), Positives = 345/786 (43%), Gaps = 129/786 (16%)
Query: 385 NVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTS 444
N + + VTP +I PE+ N ++ F A FM+V FVEE+
Sbjct: 1266 NYVYIKKVFVTPTRIIFQKPEIMQCNRSIRLFG--ADRFMQVQFVEENLDH------RIE 1317
Query: 445 IQRGIFSKPYRTKIYSRILTILQDGI-VIGDKHYEFLAFSASQLRNNSVWMFASNDEVSA 503
+Q+ + S Y+ ++++ GI V G + +L S+SQ R N W + + +A
Sbjct: 1318 LQQSLAS-------YTN--SMMKKGIHVPGFGTFHYLGNSSSQARKNMSWFYCQDKMENA 1368
Query: 504 EDVRG-------------WMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDV-EMIPD 549
+ G +G F + K + +F+S+ ++V+ +D E IPD
Sbjct: 1369 KADGGEEQVYSLDHVRDTLLGEFTNFENPRKYLRAINLVFASTMPSIVIAEEDYHEDIPD 1428
Query: 550 VEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSFRK 609
V V N Y F++GIG I A++V + C + AFQIR GG KGV+ V +
Sbjct: 1429 VIV----NGYNFTEGIGYIGWKTAQKVNEACEYIQSTCAFQIRIGGNKGVVVVRPDIQNG 1484
Query: 610 LSLRRSMLKFESR----NRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQL 665
+ LR+SM KF + +R L + PC LNR++I+LLS LGV D F + Q L
Sbjct: 1485 VYLRKSMKKFSTTSNEWSRTLEIVSIPAYKPCTLNRQVINLLSGLGVPDRCFLTLLSQSL 1544
Query: 666 ILLGKMLINREAALDVLQK--LNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLS 723
L +L + A L + V IL +++G L + +L
Sbjct: 1545 NELASLLHLPKVAKRALSSDLFDDVSDGEILSDPMIRG-----------TLHRIYCKRLV 1593
Query: 724 DLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIV 783
+ + +C I + R L+G D+T L GQVF++V+ EL+ IV
Sbjct: 1594 EYRDKCFIPIDTARTLLGVTDDTASLKEGQVFLQVSDENGELQ---------------IV 1638
Query: 784 KGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDI 843
G V V KNPCLH GDVR+++AV L VD + F Q G P ECSG DLDGD
Sbjct: 1639 TGPVAVAKNPCLHAGDVRIVQAVDIPALHH--LVDVVCFSQNGSVPTFQECSGSDLDGDR 1696
Query: 844 FFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMIN---DTLGAISTAH 900
+F+ +D ++I E + + G + D D T+ + Y+ N TLG I+ AH
Sbjct: 1697 YFVLFDREMI-GEIKQHDAFLGEDAVAADSDPTITQ-SSLIAQYITNIQKGTLGMIALAH 1754
Query: 901 L----VHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMP------LALKPKEFPDF 950
L VH+ + P + LA H VD KTG E+P L + +FP+F
Sbjct: 1755 LAVCDVHSPKHP------LAIALAIEHFKEVDRVKTGVGGEIPTDVFQILGEQFDKFPNF 1808
Query: 951 MERE--DKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLG 1008
ME+ K + S +LG+LY + IR + E D L G+E +
Sbjct: 1809 MEKSLPQKSYWESDKILGRLYAQCVSLQNVIRF-------MPEVKVDPHLLTPGWETYQA 1861
Query: 1009 VAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILL---- 1064
A Y ++ +L+ Y E+++L + D G D++++
Sbjct: 1862 DAIETYRRYRHQVGSLLKRYDIENEEDVLIQYV---------DETMSGHTLDKVVVMEIF 1912
Query: 1065 -SAKNLQNEAKEWF-------------GSSCKENEHPQLASAWYHVTYSPSYCKERMALL 1110
+QN +E F + ++E + SAWYH YS + K+ L
Sbjct: 1913 NHYTVIQNTFREQFLRPFQRAGETIDQTITTHQHEIEKKVSAWYHTAYSDN--KKLTKFL 1970
Query: 1111 SFPWIV 1116
SF WIV
Sbjct: 1971 SFYWIV 1976
>gi|393247225|gb|EJD54733.1| RdRP-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 1245
Score = 240 bits (612), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 211/726 (29%), Positives = 333/726 (45%), Gaps = 82/726 (11%)
Query: 332 GLSMETALMVLQKLHKLKSICYDPVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYR 391
G ++T + + S+ D ++ V T V G S P + N +S
Sbjct: 394 GAELKTIPWYMDDVQASASVVRDLLNRVIT---VQGPGNLSGPTNGRVVTKRRNDISTLH 450
Query: 392 ALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWS--KLPANALSTSIQRGI 449
V+P + GP + SN ++ F + F+RV F + D + AN + ++ R
Sbjct: 451 VAVSPSSVSITGPIPDRSNRILHAFGNFQEHFIRVAFTDNDGQTFRYDANVDTQALVR-- 508
Query: 450 FSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMF-----ASNDEVSAE 504
S +L ILQ+G +G + +E+LA+S S L+ +SVWM + SA
Sbjct: 509 ----------SHVLPILQNGFKLGGRLFEYLAYSQSALKQHSVWMVHPFTDTAGRRHSAS 558
Query: 505 DVRGWMGCFNKI-RSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSD 563
+R MG F K R ++ ARM FS+++ + + + M PD+ DG C SD
Sbjct: 559 TIRADMGTFTKDERCPARVGARMSLAFSATEPSGELLSSNRRMEPDI--GGDGPA-CMSD 615
Query: 564 GIGKIS--------LSFARQVAQKCGL--SHTPSAFQIRYGGYKGVIAVDRN-SFRKLSL 612
G G IS + F R +++ + PS Q+R GG KG + VD R + L
Sbjct: 616 GSGLISIEAMAAVWMEFCRGRSKRTVIRPPPPPSVIQVRVGGAKGTLFVDPMLPGRAVVL 675
Query: 613 RRSMLKFESRNRMLNV---TKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQ--QLIL 667
R SM+KFE+ R + +++ P +LNR +I +L GV E F +QQ +
Sbjct: 676 RPSMMKFEAGERFNQIEVCMAFTKPSPAYLNRPLIMVLEARGVPKETFLRLQQDVVERTQ 735
Query: 668 LGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYE--PNVEPYL-------SMMLLSHH 718
L + AAL L G L + + Q + P V+ Y+ + L
Sbjct: 736 LATRTLESAAALLESNGLGGPVGLPTLFRRIRQRFSNFPEVDSYVLTQDAFVARTLDFTV 795
Query: 719 ENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDD 778
+ L LK R RI +P L+G D GILN G++FV + REE S+
Sbjct: 796 NHVLRGLKFRGRIPIPFSWTLVGVPDHHGILNEGEIFVCI---REEDISQ---------- 842
Query: 779 KTSIVKGKVLVTKNPCLHPGDVRVLEAVYE----MKLEEKDYVDCIIFPQKGERPHPNEC 834
++G V+V+++P HPGDV +++A+ + ++C++F KG R P C
Sbjct: 843 -VEYLEGDVVVSRSPTCHPGDVMIMKAIGRPPAGTAFATERPINCVVFSTKGAR-SPGSC 900
Query: 835 -SGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTL 893
GGD DGD + ++ L P + P Y + + T+E+I++FF +++IND L
Sbjct: 901 LGGGDYDGDEYVVTKLPSLRPTKPAGPAMYKNTPRQDIGRPYTMEDIYEFFTNFVINDQL 960
Query: 894 GAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAP---AEMPLALKPKEFPDF 950
I++ L AD + + +C+ LA LHS+AVD+ KTG P +++P A P PD+
Sbjct: 961 PRIASLWLRIADSSEESVYNEQCMKLAELHSVAVDYPKTGVPVNHSDIPQA--PNRIPDW 1018
Query: 951 MERE----DKPR-YISFGVLGKLYRA-TLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFE 1004
E D+ R Y S LG L+RA +L ++ + R A+A L+ E
Sbjct: 1019 SISELGASDRDRVYRSEKALGYLFRAVSLPAVEEAREEGRAQSSAAKARKQLTLQAAQKE 1078
Query: 1005 AFLGVA 1010
L A
Sbjct: 1079 LVLNAA 1084
>gi|340521489|gb|EGR51723.1| Hypothetical protein TRIREDRAFT_55637 [Trichoderma reesei QM6a]
Length = 1734
Score = 239 bits (611), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 172/529 (32%), Positives = 266/529 (50%), Gaps = 54/529 (10%)
Query: 465 ILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAA 524
+L+ GI I HY F S SQL++ + ++ A++ E + V +G F K+++V+K A
Sbjct: 123 LLKAGISIHGVHYNFYGHSNSQLKSRTCYLCAASKEDISRKVEA-LGDFTKMKTVAKKAK 181
Query: 525 RMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKC---- 580
R+G LFS ++ + V + V+ IPD+EV + F+DG G I+ A++++++
Sbjct: 182 RIGLLFSVARAAMQVDPKMVQDIPDIEV----GDFIFTDGCGLIAPHLAKELSRRTRIVF 237
Query: 581 -GLSHTPSAFQIRYGGYKGVIAVDRNSFRK---LSLRRSMLKFESRNRMLNVTKWSESMP 636
+ +TPS FQIRY GYKGV+ +D + L +R+SM KF + + +S +
Sbjct: 238 RNMRYTPSVFQIRYRGYKGVVTLDPTMAKGVPWLKMRKSMKKFSGGDDL----SFSPYVF 293
Query: 637 CFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLN-GVDSKNILV 695
LN E+I LL LG+ + QQ+ L + N A +L LN D++ +++
Sbjct: 294 GHLNDEVIVLLDALGISRQTLLRKQQEHFEFLAQAYHNPIVAFRILCHLNMPEDAEKVII 353
Query: 696 KMLLQGYEPNVEPYLSMMLLSHHENQLSDL-KSRCRIYVPKGRLLIGCFDETGILNYGQV 754
L V P ++ ++ + ++ L+ + RCRI +PK RLL G D G+L GQ
Sbjct: 354 DSL-----DAVRPTINRLVKAEYDKMLNKRDEQRCRILIPKSRLLFGVCDAWGVLKPGQC 408
Query: 755 FVRVTMTREELESKDQSFFHRVDDKTSIVKG-KVLVTKNPCLHPGDVRVLEAVYEMKLEE 813
V+VTM D + +KG KVLVT+NPCLHPGD++ L+ V +L
Sbjct: 409 AVKVTMDG--------------DGQPYALKGTKVLVTRNPCLHPGDLQKLDVVERPELAH 454
Query: 814 KDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDH 873
VDCI+FP G RP + SGGDLDGD FF++WD D+IP Y G R +
Sbjct: 455 --LVDCIVFPTTGRRPTADMMSGGDLDGDTFFVTWDPDIIPTTVSQAAHYPGVREPLRFS 512
Query: 874 DVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTG 933
+T E+ +F Y N +LG + +L A A S++C L L S VD +
Sbjct: 513 PITDEDRLVYFAKY-TNVSLGRVKNLYLKWA--RATGAMSAECQELNRLFSQCVDGNR-- 567
Query: 934 APAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSN 982
+K F + + VL +L+ A D I+Q + N
Sbjct: 568 --------IKEDHLKKFEKPPEPDAEAPPFVLDELHEAAKDIIIQQKRN 608
>gi|426197730|gb|EKV47657.1| RNA-dependent RNA polymerase [Agaricus bisporus var. bisporus H97]
Length = 1151
Score = 239 bits (610), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 190/658 (28%), Positives = 316/658 (48%), Gaps = 76/658 (11%)
Query: 358 FVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFA 417
+V L + + S+ L+D + + A+VTP I GP E SN V++ +
Sbjct: 343 YVADLLKTFSKRVMKLGNSTSPLLVDEALCQTFHAMVTPTTILLTGPFPERSNRVIRRYG 402
Query: 418 KYASD-FMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKH 476
K D F+RV F EED L + R + R + RI IL++ IVI +
Sbjct: 403 KRNEDNFLRVEFREED-------GLQYRLDRDVNG---RASLRHRISPILKEKIVIAGRS 452
Query: 477 YEFLAFSASQLRNNSVWM---FASND--EVSAEDVRGWMGCFNK-------IRSVSKCAA 524
++FLA+S S LR +SVW F +D EV A + +G F+ I ++ AA
Sbjct: 453 FDFLAYSQSALREHSVWFCRPFVDSDLGEVDAARIIQDLGTFDNLSYDKELINCPARYAA 512
Query: 525 RMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQ------ 578
R+ Q F+++ + V++ ++ D++ ++ Y F+DG G +S FAR++ Q
Sbjct: 513 RLSQAFTAT-EAATFRVEEPQIRKDIK--TNDKQYIFTDGCGCMSEDFAREIWQTMHPKG 569
Query: 579 KCGLSHTPSAFQIRYGGYKGVIAVDRN--SFRKLSLRRSMLKFES--RNRMLNVTKWSES 634
+ P A+QIRY G KG+++VD R ++R SM+KF++ + V
Sbjct: 570 RDSEEDFPRAYQIRYAGSKGMLSVDYKLKGSRSFAVRPSMIKFDAPEAKEIEIVRGIKNP 629
Query: 635 MPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDS---- 690
P + NR +I LL LGV +V + Q + + + A+ +L+ +G+ S
Sbjct: 630 TPYYFNRPLIMLLEGLGVNYDVLQHFQDKAVAKTQDATRALQDAIILLEN-HGLGSSFRL 688
Query: 691 ----KNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDET 746
+NI +K+ + + + + +L + L DLK+ RI +P L+G DE
Sbjct: 689 ASTMQNI-IKLGIDALQSDA--FYGRLLRVAVYHALRDLKNNARIPIPDAWTLVGVADEH 745
Query: 747 GILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAV 806
L ++F + + D + ++G VLV+++PC+HPGDV+V+ A+
Sbjct: 746 NFLGKNEIFACI---------------KKSDGEMIYLEGHVLVSRSPCIHPGDVQVVSAI 790
Query: 807 YEMK----LEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFI---SWDNDLIPCETEP 859
+ E + + ++F KG RP P+ GGDLDGDI+ + + L P
Sbjct: 791 GKPPKGSCFEVQSLQNTVVFSTKGIRPIPSCLGGGDLDGDIYNLLPLAVHKSLTPLRYFK 850
Query: 860 PMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHL 919
P YT + +D T++++ F ++Y+I+D +G ++ LV AD+ + CL L
Sbjct: 851 PGKYTSGERKCLDKPSTMKDVADFVMEYIISDVIGLVANRWLVIADQSQFGIQDRVCLRL 910
Query: 920 ATLHSMAVDFAKTGAP---AEMP---LALKPKEFPDFMEREDKPRYISFGVLGKLYRA 971
A LHS AVD+ KTG P AE+P L P+ ++ + Y S +G+L RA
Sbjct: 911 AQLHSDAVDYPKTGNPVSVAEIPKLKFPLPDWSAPETVDPDPVNYYPSQSAVGRLSRA 968
>gi|343428005|emb|CBQ71530.1| related to RNA-dependent RNA polymerase [Sporisorium reilianum SRZ2]
Length = 1505
Score = 238 bits (607), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 194/634 (30%), Positives = 311/634 (49%), Gaps = 75/634 (11%)
Query: 390 YRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGI 449
+ +TP + GP ++ SN V++ F ++ S F+RV F +ED + P + R
Sbjct: 467 FHVTITPTRTLLEGPFMDASNRVLRLFPEFGSHFLRVAFCDEDGDRFP-------VSRHD 519
Query: 450 FSKPYRTK--IYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWM---FASNDEV--S 502
F+ ++ + RI T L++GI I + +E LA+S S L ++ W F D +
Sbjct: 520 FADDIDSESFVRERIGTPLKEGIDIAGRRFEALAWSGSGLGSHHCWFVTAFTDKDGKWWN 579
Query: 503 AEDVRGWMGCFNKIRS-VSKCAARMGQLFSSSKQTLVVPVQDVEMIPD-----VEVTSDG 556
AE +R +G F+++ + ++ AR+ Q FS++ T+ + ++++ D + +S+G
Sbjct: 580 AERIRASLGNFSRVENQPARFGARLSQAFSATSSTIRISDDWIQIVEDDFSHALMPSSNG 639
Query: 557 N------TYCFSDGIGKISLSFARQVAQK-CGL--------------SHTPSAFQIRYGG 595
N Y +DG+G+IS + ++ ++ C + + PSA Q R GG
Sbjct: 640 NGRSSKQRYLLTDGVGEISRALLNEIWRELCAVKNMRREWTLCEQDAARIPSAIQFRLGG 699
Query: 596 YKGVIAVDRNSFRK-LSLRRSMLKF---ESRNRMLNVTKWSESMPCFLNREIISLLSTLG 651
KGV+ ++ K + +R SM+KF E R+ + T +S ++P LNR +I+ L LG
Sbjct: 700 AKGVLCLNPQLKGKVMKVRHSMIKFSAPEHRDLEVATTSFS-ALPARLNRPLINALEDLG 758
Query: 652 VKDEVFEAMQQQQL--ILLGKMLINREAALDVLQKLNGVDSKNILVKML--LQGYEPNVE 707
V VF +Q + + + R + L L+ + L + L + G +P+
Sbjct: 759 VPAHVFLTLQDKAVESAQSARKCFRRASQLMGTFALSDTAEMHRLFRRLDSIVGIQPDQL 818
Query: 708 P---YLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREE 764
P L+ + L DLK + RI V G LIG DE G L G++F +V
Sbjct: 819 PADGILNRLCTIVIAAALGDLKRKARIPV-DGCTLIGVVDEFGFLQKGEIFAQVDY---- 873
Query: 765 LESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEK-DYVDCIIFP 823
KD SF + V+G+V+V ++P +HPGDVRV+ AV + + ++F
Sbjct: 874 --GKDGSF--------TAVEGRVMVGRSPTIHPGDVRVVNAVVPPRGHPLWQLRNVLVFN 923
Query: 824 Q-KGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHK 882
+ RP + SGGDLDGDI+ I D L P E P Y R + T ++
Sbjct: 924 KCPTGRPLQSILSGGDLDGDIYTIYRDPQLFPKRIESPGQYKTVAPRSLAAPCTFADLAD 983
Query: 883 FFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPA---EMP 939
FFVDY+IND +G +S HL AD+ + C+ LA LH+ AVD+ KTG ++P
Sbjct: 984 FFVDYVINDQVGLVSHFHLQIADKSHLHSLDPDCIRLAQLHAKAVDYRKTGQAVHRRDVP 1043
Query: 940 LALKPKEFPDFM-EREDKPR-YISFGVLGKLYRA 971
+ E PDF+ +R P Y S LG+LYRA
Sbjct: 1044 MPPFGAERPDFLVQRPAGPGIYPSTRALGQLYRA 1077
>gi|407926953|gb|EKG19860.1| PhoH-like protein [Macrophomina phaseolina MS6]
Length = 1608
Score = 238 bits (607), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 166/487 (34%), Positives = 246/487 (50%), Gaps = 36/487 (7%)
Query: 462 ILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSK 521
I +L+ GI HY F S SQL+ S +FA + +G F+K+ +V K
Sbjct: 13 ISRLLKSGIRFNGVHYNFYGHSNSQLKTRSCVLFADTRAAIHRKIES-LGDFSKMTTVGK 71
Query: 522 CAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCG 581
A R+G LFSS++ + + + IPDVE N Y F+DG G IS AR + Q
Sbjct: 72 KAKRIGLLFSSAEMGVELAPERCADIPDVE----ANDYIFTDGCGLISPHLARSLVQSVH 127
Query: 582 LS-----HTPSAFQIRYGGYKGVIAVDRNSFRKL--SLRRSMLKFESRNRM-LNVTKWSE 633
++ + PS FQIRY GYKGV+++D + + R SM KF + + L+V +S+
Sbjct: 128 IAFRNVKYIPSVFQIRYRGYKGVLSLDPSMGSQCLAKFRSSMKKFRGGDDLTLSVVDYSK 187
Query: 634 SMP-CFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKN 692
+LN E++ LL L V DEVF Q + L L + R + L+ + +
Sbjct: 188 PYTFGYLNDEVVLLLHALRVPDEVFLRKQAEHLHFLES--VTRLDVRMCFRFLSYCNRLD 245
Query: 693 ILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDL-KSRCRIYVPKGRLLIGCFDETGILNY 751
+ ++L+ G E VE + M+ +E L+ + RCRI +P+ RLL G D G+L
Sbjct: 246 LAERLLISGVEA-VERDVRKMVGQEYERMLTKRNEQRCRILIPQSRLLFGVCDTKGLLKE 304
Query: 752 GQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKL 811
G+ VRVTM + +IV +VLVT+NPCLHPGD++ AV+ +L
Sbjct: 305 GECVVRVTMDGD-------------GQAQTIVGTQVLVTRNPCLHPGDLQKFRAVFHPEL 351
Query: 812 EEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIM 871
VDC++FP G+RP + SGGDLDGD FF+ WD DLIP P +Y G +++I
Sbjct: 352 SH--LVDCVVFPTAGKRPSADLMSGGDLDGDKFFVCWDKDLIPTVASQPAEYPGPKAQIA 409
Query: 872 DHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAK 931
+T ++ +F Y N +LG + L A S +C L L S+ VD +
Sbjct: 410 LKPITEDDRIDYFAQYS-NMSLGRVKNLFLAWARL--HGPLSPQCQQLNRLFSLCVDGNR 466
Query: 932 TGAPAEM 938
P ++
Sbjct: 467 IKIPQDL 473
>gi|169623159|ref|XP_001804987.1| hypothetical protein SNOG_14810 [Phaeosphaeria nodorum SN15]
gi|160704927|gb|EAT77662.2| hypothetical protein SNOG_14810 [Phaeosphaeria nodorum SN15]
Length = 1674
Score = 238 bits (606), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 180/543 (33%), Positives = 276/543 (50%), Gaps = 52/543 (9%)
Query: 462 ILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSK 521
I +L GI I Y F S SQL++ S +M+A++ E A + G MG +K+RSV+K
Sbjct: 109 ITKMLVSGITINAISYHFFGHSNSQLKSRSCFMYAASKEEVARKIEG-MGDLSKLRSVAK 167
Query: 522 CAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCG 581
+ R+G LFSS++ + ++P + + I DV Y F+DG G +S FA+ +AQ+
Sbjct: 168 KSKRIGLLFSSAEVSTMLPSERCQDIDDVT----SKDYIFTDGCGLMSPQFAKLLAQRRN 223
Query: 582 L-----SHTPSAFQIRYGGYKGVIAVDR--NSFRKLSLRRSMLKF-ESRNRMLNVTKWSE 633
+ + PS +QIRY GYKGV+ +D + ++ R SM KF +S + V +S+
Sbjct: 224 IVFRDKRYLPSVYQIRYRGYKGVLTLDPTLSGQTQVQFRASMRKFKDSPDYSFAVVDYSK 283
Query: 634 SMP-CFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKN 692
LN EI+ LL TLG+ ++ A Q Q L + + Q L+ ++
Sbjct: 284 PYAFGSLNDEIVVLLHTLGISEKTLLAKQTQHLDFIQN--VQGGDPRSAFQFLSYINRTE 341
Query: 693 ILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDL-KSRCRIYVPKGRLLIGCFDET----- 746
+ K+LL+G E +V P L ++ + ++ + RCRI VPK RLL G D T
Sbjct: 342 LAEKLLLEGPE-SVRPTLLSLVKQEYARMINKRDEQRCRILVPKSRLLFGVCDPTAKDGC 400
Query: 747 -GILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEA 805
G L G+ FVR+T ++ + + Q+ I+ +VLVT+NPCLHPGD++ +
Sbjct: 401 PGRLKEGECFVRIT---QDGDGRAQT----------IINTEVLVTRNPCLHPGDLQKFKV 447
Query: 806 VYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTG 865
V + VDCI+F +G+RP + SGGDLDGD FF++WD+DL+P P Y G
Sbjct: 448 VDIPEFSH--LVDCIVFTTQGKRPSADLMSGGDLDGDKFFVTWDSDLVPSTVAEPAQYPG 505
Query: 866 RRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSM 925
+ I DVT + ++F Y N +LG + ++ A A S +C L L S
Sbjct: 506 GKELITFGDVTGDSRAEYFARYT-NASLGKVKNLYMKWARL--GNAMSPQCQQLNRLFSQ 562
Query: 926 AVDFAKTGAPAEMPLALKPKEFPDFME-REDKPRYISFGVLGKLYRATLDSIMQIRSNAI 984
VD P + K F D + E K + + F +L L+ A + I R+N +
Sbjct: 563 CVDGNHIRIPQNL------KVFKDLEDPPEPKAKVVPF-ILDVLHEACMQQIK--RANIL 613
Query: 985 WSE 987
E
Sbjct: 614 APE 616
>gi|58269288|ref|XP_571800.1| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21]
gi|58269290|ref|XP_571801.1| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21]
gi|58269292|ref|XP_571802.1| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21]
gi|57228036|gb|AAW44493.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|57228037|gb|AAW44494.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|57228038|gb|AAW44495.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 1120
Score = 236 bits (603), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 233/784 (29%), Positives = 373/784 (47%), Gaps = 101/784 (12%)
Query: 324 AELIQILSGLSMETA--------LMVLQKLHKLKSICYDPVSFVKTQLHVLGRNCKSIPL 375
AELI +L +S TA L QK+ +K + +F++ +
Sbjct: 313 AELIAMLRKVSSSTAFHDRILEALFSQQKIRDIKHLIPKLAAFLRRR------------- 359
Query: 376 SSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSK 435
I +++ LVTP ++ P+ E SN V + + +RV F +E+
Sbjct: 360 ---PPYIQPHLVLIRTVLVTPTRLLIGPPQYEPSNSVTRRYHDKLDGIIRVQFTDEEDRL 416
Query: 436 LPAN--ALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVW 493
A+ L SI + I +R+ LQ G++IG + + +A SASQ + +++W
Sbjct: 417 FIADNMKLIDSINPAV-------GIMARVRRALQFGLIIGGETFYPVASSASQQKEHAMW 469
Query: 494 MFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVT 553
F +N + ++R WMG ++ V+K AARMG FS+S+ + + + E +PD+E
Sbjct: 470 -FINNKVIDGLELRNWMGTVHET-VVAKHAARMGLPFSTSR-IVNMKINIGEELPDIE-- 524
Query: 554 SDGNTYCFSDGIGKISLSFARQVA----QKCGLSHTPSAFQIRYGGYKGVIA-----VDR 604
N CF+DG G Q A +K G++ PSA Q R GG KGV++ V+
Sbjct: 525 --RNGRCFTDGCGIAGREVLNQAALALNEKVGINSQPSAIQFRLGGAKGVLSDWSQLVNE 582
Query: 605 NSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQ 664
R LR SM+KF+S LNV + ++ FLNR+ I+++ GV E+ + +
Sbjct: 583 YEIR---LRPSMIKFKSDLADLNVIRIAKYQAAFLNRQFINIMCANGVPHELIIGIFEDA 639
Query: 665 LILLG--KMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQL 722
+ + K + A + Q+L + + L +++ G+ N P L + L
Sbjct: 640 IADIKGFKDRVWNNAVTENDQQLIALCNDFPLAQLIKSGFNEN--PLLLDVAAIIECRAL 697
Query: 723 SDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSI 782
DLK R R+ + G LIG DETG L G+VF + + D+S I
Sbjct: 698 QDLKWRARVKLLDGVYLIGIADETGTLKEGEVFC-------QFQENDES-------PPKI 743
Query: 783 VKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGD 842
V +VLV + P DVR AV +L + + I+F +G R P+ GGDLDGD
Sbjct: 744 VVNEVLVCRAPAC---DVRRAWAVDNPEL--RHLKNVIVFSTQGMRDMPSMLGGGDLDGD 798
Query: 843 IFFISWDNDLI-PCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHL 901
+ + WD + + PMDY + H VT + +++ FV Y++ND LG + HL
Sbjct: 799 DYTLIWDQRFVQSLKVYDPMDYEAPDPISVKH-VTQKHLNENFVQYILNDVLGQVDNCHL 857
Query: 902 VHADR----DPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMERED-K 956
+D DP +CLHL+ +HS AVDFAKTG A + +L+PKE+PDFM+++D K
Sbjct: 858 ALSDMYTPFDP------RCLHLSEIHSTAVDFAKTGQAAALDPSLRPKEWPDFMDKDDVK 911
Query: 957 PRYISFGVLGKLYRATLDSIMQIRSNAIWSEK-IAEASYDHDLEVDGF---EAFLGVAES 1012
Y S G+LGK++R ++++A +S + + Y D + F E+ L +
Sbjct: 912 VVYESTGILGKIFRI-------VQADAHFSPSDLEQMGYPTDPRITRFPLHESLLDRLKP 964
Query: 1013 HKEMYEEEMNALMNYYGASTEDEILTG-NLRNRASYLQRDNRRYGDMKDRILLSAKNLQN 1071
K YE ++ M Y E EI +G +RN+ RD +++ L N++
Sbjct: 965 LKASYERDLQYDMRRYRV-YEPEIPSGIAIRNKRRKRVRDQNLNEPLREAYNLLVNNVRE 1023
Query: 1072 EAKE 1075
A++
Sbjct: 1024 TAQK 1027
>gi|210148496|gb|ACJ09171.1| RNA-dependent RNA polymerase [Cryptococcus neoformans var. grubii]
Length = 1120
Score = 236 bits (602), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 229/781 (29%), Positives = 372/781 (47%), Gaps = 95/781 (12%)
Query: 324 AELIQILSGLSMETA--------LMVLQKLHKLKSICYDPVSFVKTQLHVLGRNCKSIPL 375
AELI +L +S TA L Q++ +K + + +F++ +
Sbjct: 313 AELIAMLRKVSSSTAFHDRILEALFSQQRIRDIKHLIPELAAFLRRR------------- 359
Query: 376 SSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSK 435
I +++ LVTP ++ P+ E SN V + + +RV F +E+
Sbjct: 360 ---PPYIQPHLVLIRTVLVTPTRLLIGPPQYEPSNSVTRRYHDKLDGIIRVQFTDEEDRL 416
Query: 436 LPAN--ALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVW 493
A+ L SI + I +R+ LQ G+VIG + + +A SASQ + +++W
Sbjct: 417 FIADYMKLVDSINPAV-------GIMARVRRALQFGLVIGGETFYPVASSASQQKEHAMW 469
Query: 494 MFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVT 553
F +N + ++R WMG ++ V+K AARMG FS+S+ + + + E +PD+E
Sbjct: 470 -FINNKVIDGLELRNWMGTVHET-VVAKHAARMGLPFSTSR-IVNMKINIGEELPDIE-- 524
Query: 554 SDGNTYCFSDGIGKISLSFARQVA----QKCGLSHTPSAFQIRYGGYKGVIA--VDRNSF 607
N CF+DG G Q A +K G++ PSA Q R GG KGV++ S
Sbjct: 525 --RNGRCFTDGCGIAGREVLNQAALALNEKVGINAQPSAIQFRLGGAKGVLSDWSQLVSE 582
Query: 608 RKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLIL 667
++ LR SM+KF S LNV + ++ FLNR+ I+++ GV E+ + + +
Sbjct: 583 YEIRLRPSMIKFRSDLADLNVIRIAKYQAAFLNRQFINIMCANGVPHELIIGIFEDAIAD 642
Query: 668 LG--KMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDL 725
+ K + A + Q+L + + L +++ G+ N P L + L DL
Sbjct: 643 IKGFKDRVWNNAVTENDQQLIALCNDFPLAQLIRSGFNEN--PLLLDVAAIIECRALQDL 700
Query: 726 KSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKG 785
K R R+ + G LIG DETG L G+VF + F D +V
Sbjct: 701 KWRARVKLSDGVYLIGIADETGTLKEGEVFCQ--------------FQENDDSPPKVVVN 746
Query: 786 KVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFF 845
+VLV + P DVR AV +L + + I+F +G R P+ GGDLDGD +
Sbjct: 747 EVLVCRAPAC---DVRRAWAVDRPEL--RHLKNVIVFSTQGMRDMPSMLGGGDLDGDDYT 801
Query: 846 ISWDNDLI-PCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHA 904
+ WD + + PMDY + H VT + +++ FV Y++ND LG + HL +
Sbjct: 802 LIWDQRFVQSLKVYDPMDYEAPDPISVKH-VTQKHLNENFVQYVLNDVLGQVDNCHLALS 860
Query: 905 DR----DPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMERED-KPRY 959
D DP +CLHL+ +HS++VDFAKTG A + +L+PKE+PDFM+++D K Y
Sbjct: 861 DMYTPFDP------RCLHLSEIHSVSVDFAKTGQAAALDPSLRPKEWPDFMDKDDVKVVY 914
Query: 960 ISFGVLGKLYRATLDSIMQIRSNAIWSEK-IAEASYDHDLEVDGF---EAFLGVAESHKE 1015
S G+LGK++R ++++A +S + + Y D + F E+ L + K
Sbjct: 915 ESKGILGKIFRI-------VQADAHFSPSDLEQMGYPTDPRITRFPLHESLLDRLKPLKA 967
Query: 1016 MYEEEMNALMNYYGASTEDEILTG-NLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAK 1074
YE ++ M Y E EI +G +RN+ RD +++ + N++ A+
Sbjct: 968 SYERDLQYDMRRYRV-YEPEIPSGIAIRNKRRKRVRDQNLNEPLREAYNILVNNVRETAQ 1026
Query: 1075 E 1075
+
Sbjct: 1027 K 1027
>gi|405121923|gb|AFR96691.1| hypothetical protein CNAG_03466 [Cryptococcus neoformans var. grubii
H99]
Length = 1120
Score = 236 bits (601), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 230/781 (29%), Positives = 370/781 (47%), Gaps = 95/781 (12%)
Query: 324 AELIQILSGLSMETA--------LMVLQKLHKLKSICYDPVSFVKTQLHVLGRNCKSIPL 375
AELI +L +S TA L Q++ +K + +F++ +
Sbjct: 313 AELIAMLRKVSSSTAFHDRILEALFSQQRIRDIKHLIPKLAAFLRRR------------- 359
Query: 376 SSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSK 435
I +++ LVTP ++ P+ E SN V + + +RV F +E+
Sbjct: 360 ---PPYIQPHLVLIRTVLVTPTRLLIGPPQYEPSNSVTRRYHDKLDGIIRVQFTDEEDRL 416
Query: 436 LPAN--ALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVW 493
A+ L SI + I +R+ LQ G+VIG + + +A SASQ + +++W
Sbjct: 417 FIADYMKLVDSINPAV-------GIMARVRRALQFGLVIGGETFYPVASSASQQKEHAMW 469
Query: 494 MFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVT 553
F +N + ++R WMG ++ V+K AARMG FS+S+ + + + E +PD+E
Sbjct: 470 -FINNKVIDGLELRNWMGTVHET-VVAKHAARMGLPFSTSR-IVNMKINIGEELPDIE-- 524
Query: 554 SDGNTYCFSDGIGKISLSFARQVA----QKCGLSHTPSAFQIRYGGYKGVIA--VDRNSF 607
N CF+DG G Q A +K G++ PSA Q R GG KGV++ S
Sbjct: 525 --RNGRCFTDGCGIAGREVLNQAALALNEKVGINAQPSAIQFRLGGAKGVLSDWSQLVSE 582
Query: 608 RKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLIL 667
++ LR SM+KF S LNV + ++ FLNR+ I+++ GV E+ + + +
Sbjct: 583 YEIRLRPSMIKFRSDLADLNVIRIAKYQAAFLNRQFINIMCANGVPHELIIGIFEDAIAD 642
Query: 668 LG--KMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDL 725
+ K + A + Q+L + + L +++ G+ N P L + L DL
Sbjct: 643 IKGFKDRVWNNAVTENDQQLIALCNDFPLAQLIRSGFNEN--PLLLDVAAIIECRALQDL 700
Query: 726 KSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKG 785
K R R+ + G LIG DETG L G+VF + F D +V
Sbjct: 701 KWRARVKLSDGVYLIGIADETGTLKEGEVFCQ--------------FQENDDSPPKVVVN 746
Query: 786 KVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFF 845
+VLV + P DVR AV +L + + I+F +G R P+ GGDLDGD +
Sbjct: 747 EVLVCRAPAC---DVRRAWAVDRPEL--RHLKNVIVFSTQGMRDMPSMLGGGDLDGDDYT 801
Query: 846 ISWDNDLI-PCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHA 904
+ WD + + PMDY + H VT + +++ FV Y++ND LG + HL +
Sbjct: 802 LIWDQRFVQSLKVYDPMDYEAPDPISVKH-VTQKHLNENFVQYVLNDVLGQVDNCHLALS 860
Query: 905 DR----DPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMERED-KPRY 959
D DP +CLHL+ +HS AVDFAKTG A + +L+PKE+PDFM+++D K Y
Sbjct: 861 DMYTPFDP------RCLHLSEIHSTAVDFAKTGQAAALDPSLRPKEWPDFMDKDDVKVVY 914
Query: 960 ISFGVLGKLYRATLDSIMQIRSNAIWSEK-IAEASYDHDLEVDGF---EAFLGVAESHKE 1015
S G+LGK++R ++++A +S + + Y D + F E+ L + K
Sbjct: 915 ESKGILGKIFRI-------VQADAHFSPSDLEQMGYPTDPRITRFPLHESLLDRLKPLKA 967
Query: 1016 MYEEEMNALMNYYGASTEDEILTG-NLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAK 1074
YE ++ M Y E EI +G +RN+ RD +++ + N++ A+
Sbjct: 968 SYERDLQYDMRRYRV-YEPEIPSGIAIRNKRRKRVRDQNLNEPLREAYNILVNNVRETAQ 1026
Query: 1075 E 1075
+
Sbjct: 1027 K 1027
>gi|209978362|gb|ACJ04634.1| RNA-dependent RNA polymerase [Cryptococcus neoformans var. grubii]
Length = 1120
Score = 235 bits (599), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 216/704 (30%), Positives = 345/704 (49%), Gaps = 71/704 (10%)
Query: 393 LVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPAN--ALSTSIQRGIF 450
LVTP ++ P+ E SN V + + +RV F +E+ A+ L SI +
Sbjct: 374 LVTPTRLLIGPPQYEPSNSVTRRYHDKLDGIIRVQFTDEEDRLFIADYMKLVDSINPAV- 432
Query: 451 SKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWM 510
I +R+ LQ G+VIG + + +A SASQ + +++W F +N + ++R WM
Sbjct: 433 ------GIMARVRRALQFGLVIGGETFYPVASSASQQKEHAMW-FINNKVIDGLELRNWM 485
Query: 511 GCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISL 570
G ++ V+K AARMG FS+S+ + + + E +PD+E N CF+DG G
Sbjct: 486 GTVHET-VVAKHAARMGLPFSTSR-IVNMKINIGEELPDIE----RNGRCFTDGCGIAGR 539
Query: 571 SFARQVA----QKCGLSHTPSAFQIRYGGYKGVIA--VDRNSFRKLSLRRSMLKFESRNR 624
Q A +K G++ PSA Q R GG KGV++ S ++ LR SM+KF S
Sbjct: 540 EVLNQAALALNEKVGINAQPSAIQFRLGGAKGVLSDWSQLVSEYEIRLRPSMIKFRSDLA 599
Query: 625 MLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLG--KMLINREAALDVL 682
LNV + ++ FLNR+ I+++ GV E+ + + + + K + A +
Sbjct: 600 DLNVIRIAKYQAAFLNRQFINIMCANGVPHELIIGIFEDAIADIKGFKDRVWNNAVTEND 659
Query: 683 QKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGC 742
Q+L + + L +++ G+ N P L + L DLK R R+ + G LIG
Sbjct: 660 QQLIALCNDFPLAQLIRSGFNEN--PLLLDVAAIIECRALQDLKWRARVKLSDGVYLIGI 717
Query: 743 FDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRV 802
DETG L G+VF + F D +V +VLV + P DVR
Sbjct: 718 ADETGTLKEGEVFCQ--------------FQENDDSPPKVVVNEVLVCRAPAC---DVRR 760
Query: 803 LEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI-PCETEPPM 861
AV +L + + I+F +G R P+ GGDLDGD + + WD + + PM
Sbjct: 761 AWAVDRPEL--RHLKNVIVFSTQGMRDMPSMLGGGDLDGDDYTLIWDQRFVQSLKVYDPM 818
Query: 862 DYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADR----DPDKARSSKCL 917
DY + H VT + +++ FV Y++ND LG + HL +D DP +CL
Sbjct: 819 DYEAPDPISVKH-VTQKHLNENFVQYVLNDVLGQVDNCHLALSDMYTPFDP------RCL 871
Query: 918 HLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMERED-KPRYISFGVLGKLYRATLDSI 976
HL+ +HS++VDFAKTG A + +L+PKE+PDFM+++D K Y S G+LGK++R
Sbjct: 872 HLSEIHSVSVDFAKTGQAAALDPSLRPKEWPDFMDKDDVKVVYESKGILGKIFRI----- 926
Query: 977 MQIRSNAIWSEK-IAEASYDHDLEVDGF---EAFLGVAESHKEMYEEEMNALMNYYGAST 1032
++++A +S + + Y D + F E+ L + K YE ++ M Y
Sbjct: 927 --VQADAHFSPSDLEQMGYPTDPRITRFPLHESLLDRLKPLKASYERDLQYDMRRYRV-Y 983
Query: 1033 EDEILTG-NLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKE 1075
E EI +G +RN+ RD +++ + N++ A++
Sbjct: 984 EPEIPSGIAIRNKRRKRVRDQNLNEPLREAYNILVNNVRETAQK 1027
>gi|328855950|gb|EGG05073.1| hypothetical protein MELLADRAFT_64236 [Melampsora larici-populina
98AG31]
Length = 1240
Score = 232 bits (592), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 190/631 (30%), Positives = 317/631 (50%), Gaps = 74/631 (11%)
Query: 380 RLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPAN 439
RL+ + C +TP + GP E SN V++ + + +F+R++ EE N
Sbjct: 434 RLLSGDSFPCRTVTITPSRFILEGPVTEQSNSVLRMY-RDTHNFLRISIREE-------N 485
Query: 440 ALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWM----F 495
L+ R + + +R L L G+ + + +EFL +S+S LR + W +
Sbjct: 486 GLTLRPDRDV---DILRLLKTRYLDFLTQGLNLCGRKFEFLGYSSSALREHQAWFVCPFY 542
Query: 496 ASNDEVSAEDVRGWMGCFNKIRSV-SKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTS 554
+ V+A +R +G F+K+ ++ ++ AR+ Q F+S++Q+L + + I DVE
Sbjct: 543 KGDSLVTAASIRQRLGDFSKVINIPARYMARVAQAFTSTRQSLTLLPSQIVRIEDVE--- 599
Query: 555 DGNTYCFSDGIGKISLSFARQVAQ--KCGLSH-------TPSAFQIRYGGYKGVIAVDRN 605
N CF+DG+G IS ARQV + GL S FQIR GG+KG+++VD
Sbjct: 600 -RNGSCFTDGVGTISPDLARQVDEVLSAGLPSRKRRHHANSSCFQIRLGGFKGMLSVDPT 658
Query: 606 SFRK-LSLRRSMLKFESRNRM-LNVT-KWSESMPCFLNREIISLLSTLGVKDEVFEAMQQ 662
+ + +R SM KF S + + L++ ++ +P +LNR +I +L LG+ ++VF A+Q+
Sbjct: 659 LKQACVCVRPSMDKFVSPDSLTLDIAGSFTRPLPAYLNRPMIKVLEDLGIHEQVFLALQR 718
Query: 663 QQLILLGKMLINREAALDVLQKLNGVDSKNI--LVKML--LQGYEPN-----VEPYLSMM 713
+ + + N A +++ +L+ + + +++ L L G E N +E +M
Sbjct: 719 EIVSKVEHSRTNLRRASELMDQLSMARTSGMPSILRQLGTLMGDESNTQSDFIEECYDLM 778
Query: 714 LLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFF 773
++ DLK R RI + L+G DE +L V+ + + ++ F
Sbjct: 779 IM----QCFRDLKYRARIPLDASYTLVGVADEDQVLPPNFVYACI-------QYPGKAPF 827
Query: 774 HRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVD----CIIFPQKGERP 829
+ ++G + ++++PCLHPGDVRV+ + ++ LE ++ C++F G R
Sbjct: 828 Y--------LEGPITISRSPCLHPGDVRVVTGIGKLDLERAPRLNALRNCVVFSVAGMRS 879
Query: 830 HPNECSGGDLDGDIFFISWDNDLIPCETE--PPMDYTGRRSRIMDHDVTLEEIHKFFVDY 887
P+ GGDLDGD++ + +LIP PP YT + +D T+E+ FF+DY
Sbjct: 880 LPSCLGGGDLDGDLYTLITLPELIPATARLHPPASYTAPEMKRLDRPCTIEDGAAFFLDY 939
Query: 888 MINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEM-PLALKPKE 946
+ +D +G I++ HL AD+ R CL L +LHS AVD+ KTG P + L P
Sbjct: 940 ISSDLVGVIASRHLHIADQADQGTRDDLCLELVSLHSDAVDYPKTGVPVAIDQLPRAPNR 999
Query: 947 F-PDFM------EREDKPRYISFGVLGKLYR 970
PDFM RE Y S VLGKL+R
Sbjct: 1000 MKPDFMCPEHHERREGDDYYESQKVLGKLFR 1030
>gi|328848635|gb|EGF97840.1| hypothetical protein MELLADRAFT_114044 [Melampsora larici-populina
98AG31]
Length = 1135
Score = 231 bits (590), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 191/631 (30%), Positives = 319/631 (50%), Gaps = 74/631 (11%)
Query: 380 RLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPAN 439
RL+ + C +TP + GP E SN V++ + + +F+R++ EE N
Sbjct: 434 RLLSGDSFPCRTVTITPSRFILEGPVTEQSNSVLRMY-RDTHNFLRISIREE-------N 485
Query: 440 ALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWM----F 495
L+ R + + +R L L G+ + + +EFL +S+S LR + W +
Sbjct: 486 GLTLRPDRDV---DILRLLKTRYLDFLTQGLNLCGRKFEFLGYSSSALREHQAWFVCPFY 542
Query: 496 ASNDEVSAEDVRGWMGCFNKIRSV-SKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTS 554
+ V+A +R +G F+K+ ++ ++ AR+ Q F+S++Q+L + + I DVE
Sbjct: 543 KGDSLVTAASIRQRLGDFSKVINIPARYMARVAQAFTSTRQSLTLLPSQIVRIEDVE--- 599
Query: 555 DGNTYCFSDGIGKISLSFARQVAQ--KCGLS------HTPSA-FQIRYGGYKGVIAVDRN 605
N CF+DG+G IS ARQV + GL H S+ FQIR GG+KG+++VD
Sbjct: 600 -RNGSCFTDGVGTISPDLARQVDEVLSAGLPSRKRRHHAKSSCFQIRLGGFKGMLSVDPT 658
Query: 606 SFRK-LSLRRSMLKFESRNRM-LNVT-KWSESMPCFLNREIISLLSTLGVKDEVFEAMQQ 662
+ + +R SM KF S + + L++ ++ +P +LNR +I +L LG+ ++VF A+Q+
Sbjct: 659 LKQACVCVRPSMDKFVSPDSLTLDIAGSFTRPLPAYLNRPMIKVLEDLGIHEQVFLALQR 718
Query: 663 QQLILLGKMLINREAALDVLQKLNGVDSKNI--LVKML--LQGYEPN-----VEPYLSMM 713
+ + + N A +++ +L+ + + +++ L L G E N +E +M
Sbjct: 719 EIVSKVEHSRTNLRRASELMDQLSMARTSGMPSILRQLGTLMGDEGNTQSDFIEECYDLM 778
Query: 714 LLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFF 773
++ DLK R RI + L+G DE +L V+ + + ++ F
Sbjct: 779 IM----QCFRDLKYRARIPLDASYTLVGVADEDQVLPPNFVYACI-------QYPGKAPF 827
Query: 774 HRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVD----CIIFPQKGERP 829
+ ++G + ++++PCLHPGDVRV+ + ++ LE ++ C++F G R
Sbjct: 828 Y--------LEGPITISRSPCLHPGDVRVVTGIGKLDLERAPRLNALRNCVVFSVAGMRS 879
Query: 830 HPNECSGGDLDGDIFFISWDNDLIPCET--EPPMDYTGRRSRIMDHDVTLEEIHKFFVDY 887
P+ GGDLDGD++ + +LIP PP YT + +D T+E+ FF+DY
Sbjct: 880 LPSCLGGGDLDGDLYTLITLPELIPATARLHPPASYTAPEMKRLDRPCTIEDGAAFFLDY 939
Query: 888 MINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEM-PLALKPKE 946
+ +D +G I++ HL AD+ R CL L +LHS AVD+ KTG P + L P
Sbjct: 940 ISSDLVGVIASRHLHIADQADQGTRDDLCLELVSLHSDAVDYPKTGVPVAIDQLPRAPNR 999
Query: 947 F-PDFM------EREDKPRYISFGVLGKLYR 970
PDFM RE Y S VLGKL+R
Sbjct: 1000 MKPDFMCPEHHERREGDDYYESQKVLGKLFR 1030
>gi|159123458|gb|EDP48577.1| RNA-directed RNA polymerase, putative [Aspergillus fumigatus A1163]
Length = 809
Score = 231 bits (588), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 178/554 (32%), Positives = 271/554 (48%), Gaps = 74/554 (13%)
Query: 465 ILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAA 524
+L++GI++ Y F S+SQLR+ + ++ + AE V +G F+ I++V+K A
Sbjct: 108 LLKEGIILNGVLYSFYGHSSSQLRSRACYLLRGSKNEVAELVES-LGDFSGIKTVAKKAK 166
Query: 525 RMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGL-- 582
R+G LFSS + VP E+I D+E + Y F+DG G + AR ++QK +
Sbjct: 167 RIGLLFSSCHALMKVPDGTYEVIDDIEFSG----YNFTDGCGLVGAKTARVLSQKLSIIS 222
Query: 583 ---SHTPSAFQIRYGGYKGVIAVDRNSFRK--LSLRRSMLKFES-RNRMLNVTKWSESMP 636
+ P+ +QIR+ GYKGV+ ++ + RRSM KF +R V ++S++ P
Sbjct: 223 RNTRYHPAVYQIRFKGYKGVVMLEPQMPPQYWFQFRRSMRKFSGIGDRSFAVVEYSKTQP 282
Query: 637 C-----------------FLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAAL 679
+LN E+I LL TLGV EVF Q++ L + + A
Sbjct: 283 ATPLFYSLPLMVQPYTYGYLNDEVILLLHTLGVSAEVFLRKQKEHFQRLQESVTEPTVAF 342
Query: 680 DVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLK-SRCRIYVPKGRL 738
L LN D + K++L G E V L ++ H+ L+ + +CRI VP+ RL
Sbjct: 343 TFLCSLNRFD---LAEKLVLHGIE-RVSGALRSLVADEHKKMLNKREDQKCRILVPESRL 398
Query: 739 LIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKT-----SIVKGKVLVTKNP 793
+ G D G+L G+ F+RVT DD +IV +V+VT+NP
Sbjct: 399 VFGVCDPRGVLQEGECFLRVT-----------------DDMNGGRPRTIVGCEVVVTRNP 441
Query: 794 CLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI 853
CLHPGD+R L+AV +L DCI+F KGERP ++ SGGDLDGD FF+ WD DL+
Sbjct: 442 CLHPGDLRKLKAVDRPELSH--LRDCIVFAVKGERPAADQMSGGDLDGDTFFVCWDPDLV 499
Query: 854 PCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARS 913
P Y R ++T++ ++F Y + +LG T L A A S
Sbjct: 500 PSTVSEAAHYPPGREPFAVEEITVDHRIEYFARY-TSISLG--RTKKLFLAWAILKGAFS 556
Query: 914 SKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYR-AT 972
+C + LHS+ VD + P + P + E ED SF +L L+R A
Sbjct: 557 VECQEINRLHSLCVDGNRIKIPDRLMNVPSPSK-----EVED-----SF-ILNVLHREAE 605
Query: 973 LDSIMQIRSNAIWS 986
+S+ ++ + W+
Sbjct: 606 KESLQKLAARGAWN 619
>gi|392571578|gb|EIW64750.1| RdRP-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 1224
Score = 230 bits (587), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 179/630 (28%), Positives = 307/630 (48%), Gaps = 74/630 (11%)
Query: 389 CYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRG 448
C R +TP + GP E SN V++ + + F+RV F +E N L R
Sbjct: 421 CLRVTITPTTMILEGPFPERSNRVMRKYYRSQDSFLRVCFQDE-------NRLQLRFDRE 473
Query: 449 IFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWM---FASNDE----- 500
I + + R+ ++L G+ ++FLA+S S L+ ++VW F D+
Sbjct: 474 IDGTDF---VNRRVKSVLLGGLAFPGARFDFLAYSQSALKEHAVWFVKPFRHTDDQGYTH 530
Query: 501 -VSAEDVRGWMGCFNK-------IRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEV 552
V A + G +G F I ++ AAR+ Q F+++ ++ + + D++
Sbjct: 531 FVDAAAIIGSLGTFRNLTFDPELIYCPARYAARISQAFTATDASITIDAGQIIFGSDIKD 590
Query: 553 TSDGNTYCFSDGIGKISLSFARQVAQKCGLSHT--------PSAFQIRYGGYKGVIAVDR 604
S F+DG+G IS A+ + + + P A+QIR+ G KG+++VD
Sbjct: 591 ASGKRE--FTDGVGTISPQLAKDIWRALQENRRRGRRDRTYPRAYQIRFQGSKGMLSVDY 648
Query: 605 N-SFRKLSLRRSMLKFESRN-RMLNVTK-WSESMPCFLNREIISLLSTLGVKDEVFEAMQ 661
R + +R SM+KFES + R + V + + + P +LNR +I LL LGV EVF+ +Q
Sbjct: 649 TLPGRSILIRPSMIKFESPDSRNIEVARAFEKPAPYYLNRPLIMLLEGLGVPYEVFQRLQ 708
Query: 662 QQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQ----GYEP-NVEPYLSMMLLS 716
+ + + + E + +L+ +G+ L ++L G P N E + +
Sbjct: 709 DNAVRDVKAAVESLERSARLLEG-HGLGGSFRLTSVMLGLHKLGLGPLNNEVFWRQTMDF 767
Query: 717 HHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRV 776
+ L +LK R RI VP+G L+G D G L G++FV + ++ D+
Sbjct: 768 AINHVLRELKHRARIPVPEGWTLVGVADVHGYLEEGEIFVCI-------DAPDRGGLR-- 818
Query: 777 DDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMK----LEEKDYVDCIIFPQKGERPHPN 832
++G+ L++++P +HPGD +V+ A+ + + + ++F KG+RP P+
Sbjct: 819 -----YLEGRTLISRSPTIHPGDAQVVHAIGRPRPGSPFSMESLRNTVVFSIKGKRPLPS 873
Query: 833 ECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDT 892
GGDLDGD + ++ +L+P T +Y +++DH+ T+ ++ +F +Y+ +DT
Sbjct: 874 CLGGGDLDGDEYNVTSMPELLPPRTFYAAEYKATPRKLVDHESTMVDVAEFVAEYINSDT 933
Query: 893 LGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPA------EMPLALKPK- 945
LG I+ L+ AD+ + CL LA LHS AVD+ K+G P + A KP
Sbjct: 934 LGIIAITWLIIADQSTEGILDPDCLKLAALHSDAVDYPKSGQPVPIQHIPRLQFARKPDW 993
Query: 946 EFPDFMERE---DKPR-YISFGVLGKLYRA 971
P+ M + + PR Y S +GKLYR+
Sbjct: 994 NAPETMSIDTLSESPRFYESVRAIGKLYRS 1023
>gi|46133873|ref|XP_389252.1| hypothetical protein FG09076.1 [Gibberella zeae PH-1]
Length = 1721
Score = 230 bits (587), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 177/548 (32%), Positives = 270/548 (49%), Gaps = 57/548 (10%)
Query: 455 RTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFN 514
R ++ + L+ GI I HY F S SQL++ S ++ A+ E + + +G F
Sbjct: 112 RQEVSDYSIRCLRAGISINGVHYNFYGHSNSQLKSRSCFLLAATKEGISRQIES-LGDFT 170
Query: 515 KIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFAR 574
K+++V K A R+G LFSS+K + + E IPDVE T+D Y F+DG G I+ S A+
Sbjct: 171 KMKTVGKKAKRIGLLFSSAKTAMTINPDRCEDIPDVE-TAD---YIFTDGCGLIAPSLAQ 226
Query: 575 QVAQKCGL-----SHTPSAFQIRYGGYKGVIAVDRNSFRK---LSLRRSMLKFESRNRML 626
+++++ + +TPS FQIRY GYKGV+ VD ++ L R+SM KF +
Sbjct: 227 ELSRRTRIIFRDTRYTPSVFQIRYRGYKGVVTVDTRMKKQKALLKFRKSMKKFSGGDDH- 285
Query: 627 NVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLN 686
++ FLN E I LL LG+ E A Q++ LL + A +L N
Sbjct: 286 ---SFAPFSYGFLNDETIILLHALGISQETLLAKQRRHFDLLRNAKTDHRDAFRLLSYSN 342
Query: 687 GVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKS-RCRIYVPKGRLLIGCFDE 745
D + ++LL G + +++P ++ ++ + + L+ RCRI+V K RLL G D
Sbjct: 343 RPD---LAERVLLDGSD-SIKPQINSIVNAELKKMLNKKDGQRCRIFVQKSRLLFGVCDA 398
Query: 746 TGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEA 805
+L G+V V+VTM ++ H ++ +V V +NPCLHPGD + +
Sbjct: 399 WDVLREGEVAVKVTM-------EETGVPH------ALKNTEVTVIRNPCLHPGDWQKFKV 445
Query: 806 VYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTG 865
V +L DCI+F +G+RP + SGGDLDGD FF+ WD DLIP P Y G
Sbjct: 446 VERPELAH--LTDCIVFSTRGKRPAADMMSGGDLDGDTFFVCWDPDLIPSTISTPALYPG 503
Query: 866 RRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKAR-----SSKCLHLA 920
R I +T ++ +F Y N +LG + +L D AR S++C L
Sbjct: 504 GRDPITFRPITDDDRLVYFAKYN-NASLGKVKNLYL-------DWARATGPMSAQCQELN 555
Query: 921 TLHSMAVDFAKTGAPAEMPLALK-PKEFPDFM------EREDKPRYISFGVLGKLYRATL 973
L S VD + P ++ K P + P F+ E D+ +S G L +
Sbjct: 556 RLFSQCVDGNRIRIPEKLQSPPKSPDDAPPFILDILHSESRDQAHSLSLSQNGDLDGYDI 615
Query: 974 DSIMQIRS 981
D+I + S
Sbjct: 616 DAIQLLLS 623
>gi|74830367|emb|CAI39056.1| RNA-dependent RNA polymerase [Paramecium tetraurelia]
Length = 1367
Score = 230 bits (586), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 177/624 (28%), Positives = 300/624 (48%), Gaps = 79/624 (12%)
Query: 391 RALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIF 450
R +TP I + E ++ +++ F+RV + +E+ Q +
Sbjct: 526 RVSMTPSGILYFNKQPEVTSGILRQHYNIVEYFLRVHYEDEN-------------QDMVL 572
Query: 451 SKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAE-DVRGW 509
+ PY T+ Y + + I +H+E +S+S LR + W N D+
Sbjct: 573 NIPYITQTY--YYNFMFPTLKILGQHFELFTWSSSSLRAGTCWFIDFNGAGKQRTDIIKS 630
Query: 510 MGCFNKIR--SVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGK 567
+G F ++ ++K AAR+GQ S+S V ++ + D+ D N ++DGIGK
Sbjct: 631 IGNFTNLKYDEIAKNAARLGQNLSTSISVDCVGGINILIKDDL---VDKNNKLYTDGIGK 687
Query: 568 ISLSFARQVAQKCGLSHTP--SAFQIRYGGYKGVIAVDRNSFRK-LSLRRSMLKFESRN- 623
IS Q+ QK ++ SA QIRY G KG++ +D + +K + LRRSM+K+
Sbjct: 688 ISQDLIDQIRQKMRVNSKIKISAIQIRYEGAKGLLVLDESLEQKTIVLRRSMIKYNPAKG 747
Query: 624 --RMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQL-----ILLGKMLINRE 676
+ + +++ +LNR+II LL TL V ++ F+ +Q + L + + I +
Sbjct: 748 YPNKIQILDFNKFRGGYLNRQIIILLLTLQVNEKAFQELQDEYLKKIEDLQMKDASIYKY 807
Query: 677 AALDVLQKLNGVDSKNILVKM---LLQGYEPNVEPYLSMMLLSHHENQ-LSDLKSRCRIY 732
++D + +D NI+ + + G E N+ L +LS + + L L+ + I
Sbjct: 808 FSVDYCDE--QIDLPNIMDALRAYINIGMEDNI---LCQGVLSKLKQRGLLQLRKKTSIL 862
Query: 733 VPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKN 792
V K ++G DE +L +++ V + + + ++ ++G+VLVT+N
Sbjct: 863 VEKAARVLGVIDEHNLLQPNEIYCLVQDENNDTQVEPEN-----------IQGEVLVTRN 911
Query: 793 PCLHPGDVRVLEAVYEMKLEEKD--------YVDCIIFPQKGERPHPNECSGGDLDGDIF 844
PCLHPGD++ L A+ ++ +++ ++C++FP G P + +GGDLDGD++
Sbjct: 912 PCLHPGDIKKLNAISTQEILKRNGSKNPYSQLINCLVFPACG-NSLPCQIAGGDLDGDLY 970
Query: 845 FISWDNDLIPCETEPPMDYTGRRSRIM------------------DHDVTLEEIHKFFVD 886
FI WDN L+P M Y ++ + D + + + F
Sbjct: 971 FICWDNRLLPPVQAKSMVYDNKKPNQVQYKKIDFRENNQRFHENVDKNFDTKNMFDFLYF 1030
Query: 887 YMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKE 946
Y+ ++TLG I +HL AD+ KA CL LA LHS AVDF KTG + + L K
Sbjct: 1031 YLNSETLGLIDNSHLAWADKSDKKANDPNCLELAELHSDAVDFVKTGKQVFLDVKLLSKI 1090
Query: 947 FPDFMEREDKPRYISFGVLGKLYR 970
FPD+ME+E Y S ++GKLYR
Sbjct: 1091 FPDYMEKEQSVTYESQTIIGKLYR 1114
>gi|145498970|ref|XP_001435471.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124402604|emb|CAK68074.1| unnamed protein product [Paramecium tetraurelia]
Length = 1343
Score = 230 bits (586), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 177/624 (28%), Positives = 300/624 (48%), Gaps = 79/624 (12%)
Query: 391 RALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIF 450
R +TP I + E ++ +++ F+RV + +E+ Q +
Sbjct: 502 RVSMTPSGILYFNKQPEVTSGILRQHYNIVEYFLRVHYEDEN-------------QDMVL 548
Query: 451 SKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAE-DVRGW 509
+ PY T+ Y + + I +H+E +S+S LR + W N D+
Sbjct: 549 NIPYITQTY--YYNFMFPTLKILGQHFELFTWSSSSLRAGTCWFIDFNGAGKQRTDIIKS 606
Query: 510 MGCFNKIR--SVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGK 567
+G F ++ ++K AAR+GQ S+S V ++ + D+ D N ++DGIGK
Sbjct: 607 IGNFTNLKYDEIAKNAARLGQNLSTSISVDCVGGINILIKDDL---VDKNNKLYTDGIGK 663
Query: 568 ISLSFARQVAQKCGLSHTP--SAFQIRYGGYKGVIAVDRNSFRK-LSLRRSMLKFESRN- 623
IS Q+ QK ++ SA QIRY G KG++ +D + +K + LRRSM+K+
Sbjct: 664 ISQDLIDQIRQKMRVNSKIKISAIQIRYEGAKGLLVLDESLEQKTIVLRRSMIKYNPAKG 723
Query: 624 --RMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQL-----ILLGKMLINRE 676
+ + +++ +LNR+II LL TL V ++ F+ +Q + L + + I +
Sbjct: 724 YPNKIQILDFNKFRGGYLNRQIIILLLTLQVNEKAFQELQDEYLKKIEDLQMKDASIYKY 783
Query: 677 AALDVLQKLNGVDSKNILVKM---LLQGYEPNVEPYLSMMLLSHHENQ-LSDLKSRCRIY 732
++D + +D NI+ + + G E N+ L +LS + + L L+ + I
Sbjct: 784 FSVDYCDE--QIDLPNIMDALRAYINIGMEDNI---LCQGVLSKLKQRGLLQLRKKTSIL 838
Query: 733 VPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKN 792
V K ++G DE +L +++ V + + + ++ ++G+VLVT+N
Sbjct: 839 VEKAARVLGVIDEHNLLQPNEIYCLVQDENNDTQVEPEN-----------IQGEVLVTRN 887
Query: 793 PCLHPGDVRVLEAVYEMKLEEKD--------YVDCIIFPQKGERPHPNECSGGDLDGDIF 844
PCLHPGD++ L A+ ++ +++ ++C++FP G P + +GGDLDGD++
Sbjct: 888 PCLHPGDIKKLNAISTQEILKRNGSKNPYSQLINCLVFPACG-NSLPCQIAGGDLDGDLY 946
Query: 845 FISWDNDLIPCETEPPMDYTGRRSRIM------------------DHDVTLEEIHKFFVD 886
FI WDN L+P M Y ++ + D + + + F
Sbjct: 947 FICWDNRLLPPVQAKSMVYDNKKPNQVQYKKIDFRENNQRFHENVDKNFDTKNMFDFLYF 1006
Query: 887 YMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKE 946
Y+ ++TLG I +HL AD+ KA CL LA LHS AVDF KTG + + L K
Sbjct: 1007 YLNSETLGLIDNSHLAWADKSDKKANDPNCLELAELHSDAVDFVKTGKQVFLDVKLLSKI 1066
Query: 947 FPDFMEREDKPRYISFGVLGKLYR 970
FPD+ME+E Y S ++GKLYR
Sbjct: 1067 FPDYMEKEQSVTYESQTIIGKLYR 1090
>gi|290993029|ref|XP_002679136.1| predicted protein [Naegleria gruberi]
gi|284092751|gb|EFC46392.1| predicted protein [Naegleria gruberi]
Length = 464
Score = 229 bits (585), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 163/479 (34%), Positives = 250/479 (52%), Gaps = 34/479 (7%)
Query: 510 MGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKIS 569
+G F+ I+ ++ AAR+GQ FS + + + ++ E+IPD+ N Y F+DG+G+IS
Sbjct: 1 LGNFSHIKVKARYAARIGQCFSHTYEGIS---KEYEIIPDIT----RNNYVFTDGVGRIS 53
Query: 570 LSFARQVAQK-----CGLSHTPSAFQIRYGGYKGVIAVDRN----SFRKLSLRRSMLKF- 619
L FA ++ +K G + PSAFQ R GG KGV+ VD + S L L +S KF
Sbjct: 54 LEFAVELTKKFQISFAGKEYIPSAFQFRMGGLKGVVVVDPDIHLYSDLDLLLSKSQEKFI 113
Query: 620 -ESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAA 678
S + +T + LNR++I+LLS+ V D VF + + L + K+ +++
Sbjct: 114 DSSSSEFELITYSKRNRFASLNRQLIALLSSNKVSDSVFLQLLDRDLEEIKKLFNDKKYM 173
Query: 679 LDVLQK-LNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGR 737
VL+K + + KN + K+ Y + + ++ ++ RI + K
Sbjct: 174 RRVLRKSQDNIVGKN-MKKVASLNYLDSQYDFSKVVQSGEDIKFFYQIEPNGRIILDKAL 232
Query: 738 LLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSI----VKGKVLVTKNP 793
LL+G D G+L +VF++++ ELE+ D + DD + + G V +T++P
Sbjct: 233 LLMGVVDFYGVLEEDEVFIQLS----ELENSDSDLY---DDNCFVNGGTLSGTVAITRSP 285
Query: 794 CLHPGDVRVLEAVYE-MKLEEKDYV-DCIIFPQKGERPHPNECSGGDLDGDIFFISWDND 851
CLHPGD+R +AV + K+ + ++ D I+F QKG RP N+ SGGD DGD F + WD
Sbjct: 286 CLHPGDIRKFKAVTDPEKISKLSHLRDVIVFSQKGNRPAANKMSGGDYDGDFFQVFWDPL 345
Query: 852 LIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKA 911
L+ E PPM+Y G I +F +Y+IND LG ++ HL H D++ D
Sbjct: 346 LVNFEEYPPMNYEGLPPEEKHDGCDYRVIREFLTEYIINDNLGVVAFLHLEHYDKEGDGL 405
Query: 912 RSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMERE-DKPRYISFGVLGKLY 969
RS CL LA HS VD+AKTG +P L P +M R K Y S V+G +Y
Sbjct: 406 RSEPCLKLAKHHSYQVDYAKTGVRKPLPTELFSNSRPHYMPRVFGKKTYHSEDVIGSIY 464
>gi|395334239|gb|EJF66615.1| RdRP-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 1225
Score = 229 bits (584), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 193/653 (29%), Positives = 318/653 (48%), Gaps = 92/653 (14%)
Query: 374 PLSSHKRLIDH-NVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEED 432
P+++H +D C+ +TP + GP E SN V++ + + F+RV+F +E
Sbjct: 410 PVAAHAPAVDAPATFQCFHVSITPTTMILEGPFPERSNRVIRMYWQNEECFLRVSFQDE- 468
Query: 433 WSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSV 492
N L R + + + I R +L+DGI I H+ FLA+S S L+ ++V
Sbjct: 469 ------NRLQFRFDREVDGRSF---INRRFRGVLRDGITIAGAHFSFLAYSQSALKEHAV 519
Query: 493 WM---FASNDE------VSAEDVRGWMGCF------NKIRSVSKCAARMGQLFSSSKQTL 537
W F D V A + +G F I ++ AAR+ Q F+++ ++
Sbjct: 520 WFVKPFRHRDGHGVECYVDATTIIENLGNFRVSFDTTLIHCPARYAARIAQAFTATDASI 579
Query: 538 VVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQV-------AQKCGLSHT-PSAF 589
V V +E D+E + GN YCF+DG+G IS AR++ ++ T P A+
Sbjct: 580 TVDVDQIERGEDLE-DATGN-YCFTDGVGTISRELAREIWRSVRERGRRSRPDRTYPRAY 637
Query: 590 QIRYGGYKGVIAVDRN-SFRKLSLRRSMLKFES-RNRMLNVTK-WSESMPCFLNREIISL 646
Q+R+ G KG+++VD S RK+ +R SM KFE+ ++ + V + + P FLNR +I L
Sbjct: 638 QVRFQGSKGMLSVDHTLSGRKIVIRPSMTKFEANQSSTIEVARAFDRPGPYFLNRPLIML 697
Query: 647 LSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNV 706
L LGV E +A+Q + + + + E + +L+ +G+ L +L ++ +
Sbjct: 698 LEGLGVSYETLQALQDAAVYDAQQSVTSLERSARLLEA-HGLGVSFRLTSAMLGLHKLGL 756
Query: 707 EPY-------LSMMLLSHHENQLSDLKSRCRIYVPK--GRLLIGCFDETGILNYGQVFVR 757
+P +M +H L +LK RI VP L+G D G L G++F
Sbjct: 757 DPLNDDVFWRQAMDFAINH--VLRELKHHARIPVPSLDSWTLVGVADVHGELQDGEIFAC 814
Query: 758 VTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCL-------HPGDVRVLEAVYE-- 808
+ S + +++ + PCL HPGDV+V+ A+
Sbjct: 815 ID---------------------SPTESRLIYLEGPCLISRSPTIHPGDVQVVHAIGRPP 853
Query: 809 --MKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGR 866
L ++ + ++F +GERP P+ GGDLDGD++ ++ DL+P T P Y
Sbjct: 854 AGSALAKESLRNAVVFSIQGERPLPSCLGGGDLDGDLYNVTTRRDLLPPRTYTPASYEPA 913
Query: 867 RSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMA 926
++++H+ T+E++ F +Y+ +DTLG I+T L AD+ D CL LA LHS A
Sbjct: 914 AKKLVEHECTMEDVADFVAEYISSDTLGIIATTWLKIADQSADGILDQDCLKLAALHSHA 973
Query: 927 VDFAKTGAPA---EMPLALKPKEFPDF-----MEREDKPRYISFGVLGKLYRA 971
VD+ K+G P ++P LK K PD+ + R ++ Y S +GKL+R+
Sbjct: 974 VDYPKSGQPVPVNQIP-KLKSKTKPDWSAPETISRGNEDYYTSMKAIGKLFRS 1025
>gi|169844306|ref|XP_001828874.1| RNA-directed RNA polymerase 2 [Coprinopsis cinerea okayama7#130]
gi|116509986|gb|EAU92881.1| RNA-directed RNA polymerase 2 [Coprinopsis cinerea okayama7#130]
Length = 1232
Score = 229 bits (583), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 184/650 (28%), Positives = 307/650 (47%), Gaps = 97/650 (14%)
Query: 383 DHNVMSCYRALVTPMKIYCLGPELETSNYVVKNF-AKYASDFMRVTFVEEDWSKLPANAL 441
D ++ +TP KI GP E SN V++ + ++ F+RVTF +E +L +
Sbjct: 417 DGSLYQAQHVTITPTKILLEGPFPERSNRVIRAYEPRHQESFLRVTFADE--GRLQYRSN 474
Query: 442 STSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMF-----A 496
+ F + R L +G+ I +H+ FLA+S S L+ +SVW
Sbjct: 475 DRELDHEAF-------VRERFGEFLLNGLTIAKRHFRFLAYSQSALKEHSVWFVKPFVDT 527
Query: 497 SNDEVSAEDVRGWMGCFNKI-------RSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPD 549
+ V+AE + +G F+ + ++ AAR+ Q F+++ ++ V+++ D
Sbjct: 528 KHGLVNAESIIHSLGNFDGLDFDSQLMHCPARYAARLSQAFTAT-DACIIEVEEIINGRD 586
Query: 550 VEVTS-DGNTYCFSDGIGKISLSFARQVAQKC--------GLSHTPSAFQIRYGGYKGVI 600
+EV S +G YCF+DG+G +S AR++ + + P+A+Q+R+ G KG++
Sbjct: 587 IEVVSPEGQKYCFTDGVGTLSPELAREIWKHLKRTKRRARSVKGHPAAYQVRFMGSKGML 646
Query: 601 AVD-RNSFRKLSLRRSMLKFESRN-RMLNVTK-WSESMPCFLNREIISLLSTLGV----- 652
+VD R + LR SM+KFE+ N R + + + + P FLNR +I+LL LGV
Sbjct: 647 SVDYRLQGSTIYLRPSMIKFEAPNSRAIEIARSFDRPTPYFLNRPLITLLEGLGVPLSTF 706
Query: 653 ---KDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGV-DSKNILVKMLLQGYEPNVEP 708
+D QQ L + L +L V +S N L +L N +
Sbjct: 707 KFFQDRAVRETQQAASSLATAAAMLDTYGLGASFRLPSVMNSLNKLGIPVL-----NQDR 761
Query: 709 YLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESK 768
+LS + + L LK+ RI VP L+G D L Q+F
Sbjct: 762 FLSRAMEYAINHILRLLKNHARIPVPGAWTLVGVADVHRFLQPRQIF------------- 808
Query: 769 DQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAV----YEMKLEEKDYVDCIIFPQ 824
++ ++ + ++G VL++++P +HPGDV++++A+ + + + ++F
Sbjct: 809 --AYVKPLNSRGIYLEGPVLISRSPTIHPGDVQLVQAIGHPPPDSPFAHEPLANTVVFSV 866
Query: 825 KGERPHPNECSGGDLDGDIFFISWDNDLIPCET---------------EPPMDYTGRRSR 869
G+RP P+ GGDLDGDI+ +LIP E + P Y + +
Sbjct: 867 LGDRPLPSCLGGGDLDGDIY------NLIPLEDPQRPELRGFTPVRPLQAPSQYAPAQRK 920
Query: 870 IMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDF 929
I+D T+ ++ +F ++Y+++D LG I+ L+ AD+ P S CL LA LHS AVD+
Sbjct: 921 ILDRKATMRDVAEFVMEYILSDVLGIIAINWLIIADQSPRGIYDSDCLKLADLHSDAVDY 980
Query: 930 AKTGAPAEMP--LALKPKEFPDFMERE------DKPRYISFGVLGKLYRA 971
KTG P + LK + PD+ E Y S +GKL+RA
Sbjct: 981 PKTGNPVALTNIPRLKYRTKPDWNAPETVDTSASGNYYTSSKAIGKLFRA 1030
>gi|388857678|emb|CCF48827.1| related to RNA-dependent RNA polymerase [Ustilago hordei]
Length = 1462
Score = 228 bits (582), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 191/632 (30%), Positives = 305/632 (48%), Gaps = 73/632 (11%)
Query: 390 YRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGI 449
Y +TP ++ GP ++ SN V++ F ++ S F+RV F +ED + P +S GI
Sbjct: 458 YHVAITPTRMLLEGPFMDASNRVLRLFPEFGSHFVRVAFCDEDGDRFP---VSRHDLHGI 514
Query: 450 FSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWM---FASNDEV--SAE 504
S+ + + RI L+ GI I + +E LA+S S L ++ W F D +AE
Sbjct: 515 DSESF---VRERIGDPLKHGIAIAGRKFEALAWSGSGLGSHHCWFVTAFTDKDGNLWNAE 571
Query: 505 DVRGWMGCFNKI-RSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPD----VEVTSDGNT- 558
+R +G F + R ++ AR+ Q FS++ T+ + V+++ D + S+G
Sbjct: 572 RIRQSLGDFQGVDRYPARLGARLSQAFSATSSTIKINDDWVKIVTDDHSNCAMPSNGPNE 631
Query: 559 -----YCFSDGIGKIS----------LSFARQVAQKCGLSHT-----PSAFQIRYGGYKG 598
Y +DG+G+IS L A+ + ++ LS PSA Q RYGG KG
Sbjct: 632 REKQFYLLTDGVGEISRELRDDIWRELCSAKNMLREWQLSQQDARRIPSAIQFRYGGAKG 691
Query: 599 VIAVDRNSFRK-LSLRRSMLKFES-RNRMLNVTKWS-ESMPCFLNREIISLLSTLGVKDE 655
V+ ++ K + +R SM+KF + ++R L V S +P LNR +I+ L LGV +
Sbjct: 692 VLCLNPQLRGKVMKVRHSMIKFSAPKHRDLEVATTSFHPLPARLNRPLINALEDLGVPAD 751
Query: 656 VFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNI--LVKML--LQGYEPNV---EP 708
VF ++Q + + + + A +++ D+ + L L + G P+ +
Sbjct: 752 VFVSLQNKAVESAQLARKDFKHASQLMRSFALSDTAEVHKLFHRLDSILGITPDNLHHDS 811
Query: 709 YLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESK 768
L+ + L DLK + RI V G LIG DE L ++FV+V
Sbjct: 812 ILNRLCTIVIAAALGDLKRKARIPV-DGCTLIGVVDEFNYLGKNEIFVQVN--------- 861
Query: 769 DQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEE-KDYVDCIIFPQKGE 827
+ D + I++G+V++ ++P +HPGDVR++ AV + + ++F +
Sbjct: 862 -----DKEDGQYRIIEGRVMIGRSPTIHPGDVRIVTAVKPPPTHPLRQLRNVVVFNKHPH 916
Query: 828 -RPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVD 886
RP + SG D DGDIF I D L P + P Y R + T E++ FFVD
Sbjct: 917 GRPLQSMLSGADFDGDIFTIYEDEQLFPKQMASPGVYKNTPPRALARPCTFEDLADFFVD 976
Query: 887 YMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAE-----MPLA 941
++IND +G +ST HL AD+ + C+ LA LH+ AVD+ KTG MP
Sbjct: 977 FVINDQIGLVSTFHLHIADQSELHSLDPDCVKLAQLHAKAVDYRKTGQAVHRKDVPMPPL 1036
Query: 942 LKPKEFPDFMEREDKPR--YISFGVLGKLYRA 971
P+ PDF+ + + Y S LGKL+RA
Sbjct: 1037 NSPR--PDFLAQRPVGQGIYASSRALGKLFRA 1066
>gi|321261399|ref|XP_003195419.1| hypothetical protein CGB_G5150C [Cryptococcus gattii WM276]
gi|317461892|gb|ADV23632.1| Conserved hypothetical protein [Cryptococcus gattii WM276]
Length = 1120
Score = 228 bits (581), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 228/785 (29%), Positives = 373/785 (47%), Gaps = 103/785 (13%)
Query: 324 AELIQILSGLSMETA--------LMVLQKLHKLKSICYDPVSFVKTQLHVLGRNCKSIPL 375
AEL+ +L +S TA L QK+ +K + +F++ +
Sbjct: 313 AELVAMLRKVSSSTAFHDRILEALFSQQKIRDIKHLIPKLAAFLRRR------------- 359
Query: 376 SSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSK 435
I +++ LVTP ++ P+ E SN V + + +RV F +E+
Sbjct: 360 ---PPYIQPHLVLIRTVLVTPTRLLIGPPQYEPSNSVTRRYHDKLDGIIRVQFTDEEDRL 416
Query: 436 LPAN--ALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVW 493
A+ L SI + I +R+ LQ G++IG + + +A SASQ + +++W
Sbjct: 417 FIADYMKLVDSINPAV-------GIMARVRRALQFGLIIGGETFYPVASSASQQKEHAMW 469
Query: 494 MFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVT 553
F +N + ++R WMG ++ V+K AARMG FS+S+ + + + E +PD+E
Sbjct: 470 -FINNKIIDGLELRNWMGTVHET-VVAKHAARMGLPFSTSR-IVNMKINIGEELPDIE-- 524
Query: 554 SDGNTYCFSDGIGKISLSFARQVA----QKCGLSHTPSAFQIRYGGYKGVIA-----VDR 604
N CF+DG G Q A +K G++ PSA Q R GG KGV++ V+
Sbjct: 525 --RNGRCFTDGCGIAGREVLNQAALALNEKFGINAQPSAIQFRLGGAKGVLSDWSQLVNE 582
Query: 605 NSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQ 664
R LR SM+KF S LNV + ++ FLNR+ I+++ GV E+ + +
Sbjct: 583 YEIR---LRPSMIKFRSDLADLNVIRIAKYQAAFLNRQFINIMCANGVPHELIIGIFEDA 639
Query: 665 LILLGKMLINR---EAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQ 721
+ + K +R A + ++L + + L +++ G+ N P + +
Sbjct: 640 IADI-KGFRDRVWNNAITENDEQLIALCNDFPLAQLIKSGFSEN--PLVLDVAAIIECRA 696
Query: 722 LSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTS 781
L DLK R R+ + G LIG DETG L G++F + + D+S
Sbjct: 697 LQDLKWRARVKLSDGVYLIGIADETGTLKEGEIFC-------QFQENDES-------PPK 742
Query: 782 IVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDG 841
+V +VLV + P DVR AV +L + + I+F +G R P+ GGDLDG
Sbjct: 743 VVVNEVLVCRAPAC---DVRRAWAVDRPEL--RHLKNVIVFSTQGMRDMPSMLGGGDLDG 797
Query: 842 DIFFISWDNDLI-PCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAH 900
D + + WD + + PMDY + H VT + +++ FV Y++ND LG + H
Sbjct: 798 DDYTLIWDQRFVQSLKVYDPMDYEAPDPISVKH-VTQKHLNENFVQYVLNDVLGQVDNCH 856
Query: 901 LVHADR----DPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMERED- 955
L +D DP +CLHL+ +HS AVDFAKTG A + +L+PKE+PDFM+++D
Sbjct: 857 LALSDMYTPFDP------RCLHLSEIHSTAVDFAKTGQAAALDPSLRPKEWPDFMDKDDV 910
Query: 956 KPRYISFGVLGKLYRATLDSIMQIRSNAIWSEK-IAEASYDHDLEVDGF---EAFLGVAE 1011
K Y S G+LGK++R ++++A +S + + Y D + F E+ L +
Sbjct: 911 KVVYESKGILGKIFRI-------VQADAHFSPSDLEQMGYPTDPRIIRFPLHESLLDRLK 963
Query: 1012 SHKEMYEEEMNALMNYYGASTEDEILTG-NLRNRASYLQRDNRRYGDMKDRILLSAKNLQ 1070
K YE ++ M Y E EI +G +RN+ RD +++ + N++
Sbjct: 964 PLKASYERDLQYDMRRYRV-YEPEIPSGIAIRNKRRKRVRDQNLNEPLREAYNILVNNVR 1022
Query: 1071 NEAKE 1075
A++
Sbjct: 1023 ETAQK 1027
>gi|388851646|emb|CCF54642.1| related to RNA-directed RNA polymerase [Ustilago hordei]
Length = 1557
Score = 228 bits (581), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 187/619 (30%), Positives = 301/619 (48%), Gaps = 69/619 (11%)
Query: 394 VTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKP 453
VTP +I GP SN V++++ + F RVTF ED L+TSI+
Sbjct: 425 VTPTRILLHGPHYHVSNRVIRSYPNHWHHFARVTFTNED------RDLATSIRPNYGFDD 478
Query: 454 YRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWM---FASND--EVSAEDVRG 508
I SR+L +L G+ + +H++ LA+S+S + ++VW F N+ + A +R
Sbjct: 479 SERYIQSRVLNVLLHGLNVAGRHWDLLAWSSSSISTHTVWFVTPFVDNNGQRIDANVIRS 538
Query: 509 WMGCFNK-IRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGK 567
+G F+ I+S + AR+ Q FS++ T+ VP + PD +V+ G Y +DG+G+
Sbjct: 539 RLGDFSDVIKSPALYGARLSQAFSATAHTISVPASHIHAKPD-KVSEQGMPY--TDGVGQ 595
Query: 568 ISLSFARQVAQKCGLSH------------TPSAFQIRYGGYKGVIAVD-RNSFRKLSLRR 614
IS +V +H PSA Q+R GG KGV+AV+ R + L +R
Sbjct: 596 ISPELMAEVWTSFLAAHGEGRKRKLLKAAAPSAIQMRLGGSKGVLAVNPRLRGKVLIIRP 655
Query: 615 SMLKFESRNRMLNVTKWS-ESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLI 673
SM KF S ++ L V S + P LNR +I+ L GV F +Q + + L+G+
Sbjct: 656 SMTKFGSPHQDLEVANASTRARPAKLNRPLINALEDRGVPASAFMEIQDEAITLIGRARS 715
Query: 674 NREAALDVLQKLN---GVDSKNILVKML---LQGYEPNVEPYLSMMLLSHHENQLSDLKS 727
+ +AA + + G + +++ K+ L G +V+ + ++ S L D+K
Sbjct: 716 DFQAAARLCSAFSFGTGCNLRSLFQKLHSLGLGGKTVHVDSFFLVIAKSVTAAALGDMKR 775
Query: 728 RCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKV 787
+ RI +G ++G DE +L G+VF +V E +ES + I+ G+
Sbjct: 776 KARIPT-RGVTMLGIADEFSLLKEGEVFAQV----ESVESGKVT--------RRILVGRN 822
Query: 788 LVTKNPCLHPGDVRVLEAVYE------MKLEEKDYVDCIIFPQ-KGERPHPNECSGGDLD 840
L+ ++P + P DV +++ V ++L + I+F ++P P GGD D
Sbjct: 823 LIGRSPTVDPADVAMVKCVKPPPGHPLLQLR-----NVIVFDTCSRDQPFPRRLGGGDCD 877
Query: 841 GDIFFISWDNDLIPCETEPPMDYTGRRSRI-MDHDVTLEEIHKFFVDYMINDTLGAISTA 899
GD++ I D+ L + M + + + + D E+ FF +M+ND +G +S+
Sbjct: 878 GDLYTIYEDDRLFTKAQQSAMTFHPKIAPAELSRDCGSYELAFFFTQFMLNDFIGLVSST 937
Query: 900 HLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAP---AEMPLALKPKEFPDFM----E 952
HL AD + S+C LA LHS A DF KTG ++MP +P PDF+ +
Sbjct: 938 HLRIADISELGSHDSRCKTLARLHSQATDFKKTGYAVDRSQMPRHREPI-IPDFLAQGEK 996
Query: 953 REDKPRYISFGVLGKLYRA 971
RE K Y S LG LYRA
Sbjct: 997 REGKLVYSSSRALGYLYRA 1015
>gi|390594179|gb|EIN03593.1| RdRP-domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 973
Score = 225 bits (574), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 167/571 (29%), Positives = 276/571 (48%), Gaps = 64/571 (11%)
Query: 385 NVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTS 444
+ C +VTP I + SN V+++F + F+RV F EED+ +L
Sbjct: 428 GLFDCLHVIVTPSSIVPQEQYPDRSNRVIRSFPDHQQHFVRVQFTEEDYHQL-------R 480
Query: 445 IQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMF----ASNDE 500
R + + + + +RI +L++G +G + +EFLA+S S L++++VW N
Sbjct: 481 FDRDVDGEHF---VKTRIGGVLRNGFQVGGRTFEFLAYSQSALKDHAVWFVRRFKIDNQW 537
Query: 501 VSAEDVRGWMGCFNK-IRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVT-SDGNT 558
++ +R +G F+K I S ARM Q F+++ ++ + +++ IPD+E S G T
Sbjct: 538 ITGNTIRESLGSFDKVIYCPSLYGARMSQAFTATDPSVTITAEEIVRIPDIERRDSTGRT 597
Query: 559 YCFSDGIGKISLSFARQVA--------QKCGLSHTPSAFQIRYGGYKGVIAVDRN-SFRK 609
+ F+DG+G IS A+++ +K G P AFQIR G KG+++V+ R
Sbjct: 598 WQFTDGVGTISPELAQEITTALVARSRRKKGRYFRPRAFQIRIAGSKGMVSVNHKLHGRV 657
Query: 610 LSLRRSMLKFESRNRM-LNVTKWSESMPCF-LNREIISLLSTLGVKDEVFEAMQQQQL-- 665
L LR SM+KFES N + + + K + F LNR ++ LL LGV + F +Q +
Sbjct: 658 LCLRPSMIKFESPNSLDIEIAKTFDKPGKFLLNRPLVMLLEGLGVPADEFMKLQNAAVED 717
Query: 666 ------ILLGKMLINREAALDVLQKLNGV--DSKNILVKMLLQGYEPNVEPYLSMMLLSH 717
L I L +L V + + V + +G +E +++
Sbjct: 718 TKAASRSLTKAAQILETHGLGTAFRLTSVFLGLERLGVDLTRRGNRFRLEDEFIHRAIAY 777
Query: 718 HENQ-LSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRV 776
N L +LK RI VP L+G D G+L G+VF + +
Sbjct: 778 AINHVLRELKHHARIPVPSSWTLVGIADIHGVLKEGEVFACIQPSH-------------- 823
Query: 777 DDKTSIVKGKVLVTKNPCLHPGDVRVLEAV--------YEMKLEEKDYVDCIIFPQKGER 828
+ ++G V++T++P +HPGDV++L AV Y++ + + +IF KG R
Sbjct: 824 GGEKIYLQGPVMITRSPVIHPGDVQMLRAVGRPPAGSIYDL----EPIPNTVIFSIKGSR 879
Query: 829 PHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYM 888
P +E GGDLDGD+F +S D+ P + P Y +++D + ++ F VD++
Sbjct: 880 PTASELGGGDLDGDVFNVSQYFDIFPKKCYMPASYATAERKMLDRPSDVGDVIDFVVDFI 939
Query: 889 INDTLGAISTAHLVHADRDPDKARSSKCLHL 919
ND LG I+T L+ AD+ P+ CL L
Sbjct: 940 NNDNLGLIATNWLIIADQSPESIFDDACLQL 970
>gi|389746475|gb|EIM87655.1| RdRP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 1279
Score = 224 bits (571), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 202/693 (29%), Positives = 326/693 (47%), Gaps = 82/693 (11%)
Query: 386 VMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALS-TS 444
+ Y ++TP+ GP L+ SN V++ F + F+R++F +E+ + L + S TS
Sbjct: 476 IFDSYTLVLTPLSRILEGPLLDQSNSVLRRFGHHDC-FLRLSFQDENHTPLRRDPTSGTS 534
Query: 445 IQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFAS-NDE--- 500
I + +R +++ DGI I ++++FL +S S L+++S+ +S +DE
Sbjct: 535 IAE---------LLRTRFRSVMVDGIRIAGRYFQFLGYSMSGLKDHSIMFMSSFHDERGE 585
Query: 501 -VSAEDVRGWMGCFNKIRS-VSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNT 558
++AE +R +G FN I + + AAR Q FS+S ++ + ++ I D S
Sbjct: 586 LMTAEGIRRTLGSFNHISNKPALLAARWSQAFSASDPSVTLDPNEIRRIDDRRSPSGS-- 643
Query: 559 YCFSDGIGKISLSFARQV--------AQKCGLSHTPSAFQIRYGGYKGVIAVDRNSF--- 607
F+DG G IS AR V + + PS FQIR GG KGV+ D
Sbjct: 644 -LFTDGCGTISPLLARDVWKFLQHRRRRAAKMRSVPSCFQIRIGGAKGVLFQDPTLAGLG 702
Query: 608 RKLSLRRSMLKFESRNRMLNVTKWSESMPC--FLNREIISLLSTLGVKDEVFEAMQQQQL 665
R + LR S KFE+ + + + P FLNR +I LL LGV+D+VF ++Q+
Sbjct: 703 RVVCLRPSQTKFENPEALTLDIASTSARPIRMFLNRPLILLLEFLGVQDDVFLSLQKDAT 762
Query: 666 ILLGKMLINREAALDVLQKL--NGVDSKNILVKML------LQGYEPNVEPYLSMMLLSH 717
+ + R++ D + +G S L + L+ + +++ ++
Sbjct: 763 AAVERA---RDSFTDAAKLFSHHGFGSSFRLASLFNNLISELKLDDSDLQELGCQLITRT 819
Query: 718 HE----NQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFF 773
E + L ++K R RI V L+G DE L G+++ V
Sbjct: 820 VEYAATHVLREIKFRARIPVHGSWTLLGVSDEWSCLREGEIYATVR-------------- 865
Query: 774 HRVDDKTSI---VKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPH 830
D++T ++G+VL+T++P +HPGDV+ + AV KLE + V ++F +G+R
Sbjct: 866 ---DERTGTYVPIEGRVLITRSPQIHPGDVQFVNAVRHPKLEHLNNV--VVFSCEGDRSL 920
Query: 831 PNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMIN 890
P+ GGDLDGDI+ + + +L P T Y ++ H T+E+I F +DY+
Sbjct: 921 PSMLGGGDLDGDIYNLILNPNLFPTRTSVAGAYEPLPHKVTPHPCTIEDIADFVIDYIEA 980
Query: 891 DTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPA---EMPLALKPKEF 947
D +G IS HL AD DP +CL LA S AVDF KTG P +P A + +
Sbjct: 981 DLVGYISILHLRIADLDPKGPSCDECLLLAEKASHAVDFQKTGTPVNFDNLPRAGRLR-- 1038
Query: 948 PDFMERE------DKPRYISFGVLGKLYR-ATLDSIMQIRSNAIWSEKIAEASYDHDLEV 1000
PDF+ E + Y S VLG LYR L + I +++ KI E+
Sbjct: 1039 PDFLAGEVVEPSAESSFYPSDKVLGVLYRNVPLKNEDAIHEESVFGIKIYESVTRIARRA 1098
Query: 1001 DGFEAFLGVAESHKEMYEEEMNALMNYYGASTE 1033
+ + + E+ +E +M Y TE
Sbjct: 1099 EVRFGLPSIDDYPDELLDEMHATMMAYSEQLTE 1131
>gi|426197722|gb|EKV47649.1| RNA-dependent RNA polymerase [Agaricus bisporus var. bisporus H97]
Length = 1202
Score = 223 bits (569), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 190/643 (29%), Positives = 311/643 (48%), Gaps = 97/643 (15%)
Query: 385 NVMSCYRAL---VTPMKIYCLGPELETSNYVVKNFAKYA-SDFMRVTFVEEDWSKLPANA 440
N S Y +L ++P I+ GP ++ SN V++ ++K +F+RV F +E N
Sbjct: 393 NDASYYHSLQVTISPTSIFLNGPFIDKSNRVLRRYSKANHENFLRVEFRDE-------NN 445
Query: 441 LSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDE 500
L + I + + + R+ + +G+VI + + FLA+S S LR +SVW + +
Sbjct: 446 LQYRSDKDIDDEEF---VRRRLGHFMHEGLVIAGRRFRFLAYSQSALREHSVWFVKAFRD 502
Query: 501 -----VSAEDVRGWMGCFNKI---RSVSKCAARMGQLFS---SSKQTLVVPVQDVEMIPD 549
V+A + +G F + R++ C AR G S S+ +V V ++ + D
Sbjct: 503 PKHGIVNAGKIIESLGNFRDLAYDRTLGYCPARFGARVSQAFSATDAAIVEVDEILIKRD 562
Query: 550 VEVTSDGNTYCFSDGIGKISLSFAR----QVAQKCGLSHTPSAFQIRYGGYKGVIAVDR- 604
+ T DG Y F+DG G +S AR ++A+K + P A+QIR+ G KG+I+VD
Sbjct: 563 I-TTPDGQ-YTFTDGSGDMSADLARDIWHRIARKRDRNDFPRAYQIRHEGSKGMISVDYR 620
Query: 605 -NSFRKLSLRRSMLKFES--RNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQ 661
N LSLR SM+KF++ N + + P +LNR +I +L LGVK EVF+ Q
Sbjct: 621 LNGSNTLSLRDSMIKFDAPESNEIEVSRAIDQPTPYYLNRFLIMILEGLGVKHEVFQGFQ 680
Query: 662 QQQLILLGKMLINREAALDVLQ---------------KLNGVDSKNILVKMLLQGYEPNV 706
+ + + + + +A +LQ L+ +D N++ L
Sbjct: 681 DEAVRGTQQAMEHLSSASHLLQAHGLGLTFKIPSTMANLSKLDLDNLVRDPLFD------ 734
Query: 707 EPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELE 766
+P + L +H L DLK + RI +P L+G D G L +VFV +
Sbjct: 735 QP---LRLGVYH--VLRDLKYKARIPIPNAWTLVGVADTHGYLKADEVFVCIK------H 783
Query: 767 SKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMK----LEEKDYVDCIIF 822
+ SF+ ++G VL++++P +HPGDV++ A+ + + + ++F
Sbjct: 784 PEKGSFY---------LEGPVLISRSPTIHPGDVQLAMAIGGPRQGSPFAREPLPNTVVF 834
Query: 823 PQKGERPHPNECSGGDLDGDIFFISWDND---LIPCETEPPMDYTGRRSRIMDHDVTLEE 879
KG+RP P+ GGDLDGD + I D P +T P +Y ++ + T+++
Sbjct: 835 SVKGDRPLPSCLGGGDLDGDPYNIIPLRDHPYFTPEKTYEPANYEAAEKQLTEWPCTMKD 894
Query: 880 IHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAE-- 937
+ F + Y+++D +G ++T L+ AD+ D CL LA LHS AVD+ KTG P +
Sbjct: 895 VADFVMQYIVSDVIGVVATNWLIIADQRKDIT-DDDCLVLAKLHSDAVDYPKTGRPVQQD 953
Query: 938 -MPLALKPKEFPDFMEREDKPRYISFG--------VLGKLYRA 971
+P PK PD++ E +S G LGKL RA
Sbjct: 954 HIPRPRNPK--PDWLAPETLENVLSQGGRYYESQTALGKLTRA 994
>gi|340505285|gb|EGR31631.1| RNA-dependent rna polymerase, putative [Ichthyophthirius
multifiliis]
Length = 592
Score = 223 bits (569), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 141/415 (33%), Positives = 224/415 (53%), Gaps = 47/415 (11%)
Query: 586 PSAFQIRYGGYKGVIA----VDRNSFRKLSLRRSMLKFESRNR----MLNVTKWSESMPC 637
P AF++ G KGV+ +++N+ + LR SM KF+ N +++ ++
Sbjct: 124 PHAFKLDLLGSKGVLMQMKFIEKNT---IILRNSMKKFDVLNEGDKLYIDILDMNKYRNG 180
Query: 638 FLNREIISLLSTLGVKDEVFEAMQQQQLILLGK---------MLINREAALDVLQK-LNG 687
+LNR++I LL +LG++D++F +Q + L +L K L N + ++++K +
Sbjct: 181 YLNRQVIILLKSLGIQDKIFRDLQNEFLQMLEKEGFKDANFYNLFNVDFEENLVEKNIEK 240
Query: 688 VDSKNILVKMLL--QGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDE 745
+D +L+K + Q Y +P++ +L S LK +C IYV K L+G DE
Sbjct: 241 LDRITVLLKKMYDEQLYRKK-DPFIDGVLNSLKYRGYYILKKKCNIYVEKSARLLGILDE 299
Query: 746 TGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEA 805
+L QV+ SKD F ++ GKV+V KNPCLHPGD+R+L A
Sbjct: 300 FNLLEENQVYANY--------SKDGELFQEIE-------GKVIVVKNPCLHPGDIRILNA 344
Query: 806 VYEMKLEE----KDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPM 861
V ++ K+Y + +IFP+KG+ P + +G DLDGD +FI WD LIP + P
Sbjct: 345 VSTKNDKKYNFLKEYKNVLIFPKKGKIPIAAQIAGSDLDGDQYFICWDERLIPNKEVIPF 404
Query: 862 DYTGRRSRIMDHD----VTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCL 917
DY ++ + + + +++ FF+D++ + LG I +HL AD+ A +C+
Sbjct: 405 DYDQENNKNIQQNLQNQINDQQMLDFFIDFINCENLGKIDNSHLAIADQSSFFALDFRCI 464
Query: 918 HLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRAT 972
LA LH+ AVD+AKTG +PL L+ K+FPD+ME+ DK +Y S VLG LYR
Sbjct: 465 QLAKLHAQAVDYAKTGVSPYVPLNLQSKQFPDYMEKSDKNQYESKSVLGYLYRQV 519
>gi|409080807|gb|EKM81167.1| hypothetical protein AGABI1DRAFT_56570 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1201
Score = 223 bits (568), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 188/635 (29%), Positives = 309/635 (48%), Gaps = 81/635 (12%)
Query: 385 NVMSCYRAL---VTPMKIYCLGPELETSNYVVKNFAKYA-SDFMRVTFVEEDWSKLPANA 440
N S Y +L ++P I+ GP ++ SN V++ ++K +F+RV F +E N
Sbjct: 391 NDASYYHSLQVTISPTSIFLNGPFIDKSNRVLRRYSKANHENFLRVEFRDE-------NN 443
Query: 441 LSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDE 500
L + I + + + R+ + +G+VI + + FLA+S S LR +SVW + +
Sbjct: 444 LQYRSDKDIDDEEF---VRRRLGHFMHEGLVIAGRRFRFLAYSQSALREHSVWFVKAFRD 500
Query: 501 -----VSAEDVRGWMGCFNKI---RSVSKCAARMG----QLFSSSKQTLVVPVQDVEMIP 548
V+A + +G F + R++ C AR G Q FS++ +V + E++
Sbjct: 501 PKHGIVNAGKIIESLGNFRDLAYDRTLGYCPARFGARVSQAFSATDAAIV---EVDEILI 557
Query: 549 DVEVTSDGNTYCFSDGIGKISLSFAR----QVAQKCGLSHTPSAFQIRYGGYKGVIAVDR 604
++T+ Y F+DG G +S AR ++A+K + P A+QIR+ G KG+I+VD
Sbjct: 558 KRDITTPDGQYTFTDGSGDMSADLARDIWHRIARKRDRNDFPRAYQIRHEGSKGMISVDY 617
Query: 605 --NSFRKLSLRRSMLKFES--RNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAM 660
N LSLR SM+KF++ N + + P +LNR +I +L LGVK EVF+
Sbjct: 618 RLNGSNTLSLRDSMIKFDAPESNEIEVSRAIDQPTPYYLNRFLIMILEGLGVKHEVFQGF 677
Query: 661 QQQQLILLGKMLINREAALDVLQKLN-GVDSK-----NILVKMLLQGYEPNVEPYLSMML 714
Q + + + + + +A +LQ G+ K L K+ L +P L
Sbjct: 678 QDEAVRGTQQAMEHLSSASHLLQAHGLGLTFKIPSTMANLSKLDLDNLA--RDPLFDQPL 735
Query: 715 LSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFH 774
+ L DLK + RI +P L+G D G L +VFV + + SF+
Sbjct: 736 RLGVYHVLRDLKYKARIPIPNAWTLVGVADTHGYLKADEVFVCIK------HPEKGSFY- 788
Query: 775 RVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMK----LEEKDYVDCIIFPQKGERPH 830
++G VL++++P +HPGDV++ A+ + + + ++F KG+RP
Sbjct: 789 --------LEGPVLISRSPTIHPGDVQLAMAIGGPRQGSPFAREPLPNTVVFSVKGDRPL 840
Query: 831 PNECSGGDLDGDIFFISWDND---LIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDY 887
P+ GGDLDGD + I D P +T P +Y ++ + T++++ F + Y
Sbjct: 841 PSCLGGGDLDGDPYNIIPLRDHPYFTPEKTYEPANYEAAEKQLTEWPCTMKDVADFVMQY 900
Query: 888 MINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAE---MPLALKP 944
+++D +G ++T L+ AD+ D CL LA LHS AVD+ KTG P + +P P
Sbjct: 901 IVSDVIGVVATNWLIIADQRQDIT-DDDCLVLAKLHSDAVDYPKTGRPVQQDHIPRPRNP 959
Query: 945 KEFPDFMEREDKPRYISFG--------VLGKLYRA 971
K PD++ E +S G LGKL RA
Sbjct: 960 K--PDWLAPETLENVLSQGGRYYESQTALGKLTRA 992
>gi|393244711|gb|EJD52223.1| RdRP-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 1372
Score = 222 bits (565), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 194/645 (30%), Positives = 307/645 (47%), Gaps = 90/645 (13%)
Query: 380 RLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEED-----WS 434
R++D +V C+ VTP + GP SN V++ + + F+RV F +E+ W
Sbjct: 565 RVLDRSVFLCHHVGVTPSGVRLEGPFPVLSNRVLRKYPDHQDCFIRVHFTDEEQYQFRWD 624
Query: 435 KLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWM 494
+ + RG R+ +L+ G+ + +++EFLA+S L+ ++VW
Sbjct: 625 R---EVDGVAFVRG------------RVGGVLKQGLELAGRYFEFLAYSFGALKEHTVWF 669
Query: 495 FA-----SNDEVSAEDVRGWMGCFNK-IRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIP 548
+ V+AE +R +G F+K I S AR+ Q FS++ ++ V +VE IP
Sbjct: 670 VTPFIDQAGKSVTAESIRDSLGDFSKVIYHPSLYGARLSQAFSATYPSVRVEASEVEQIP 729
Query: 549 DVEVTSDGNTYCFSDGIGKISLSFARQV-------AQKCGLSHTPSAFQIRYGGYKGVIA 601
D+ S N SDG S A+ + + + P A+QIR GG KG+I
Sbjct: 730 DIYDPSGEN--VMSDGCAPCSTQLAKDIDDVLMEGKSRYEYNPVPKAYQIRIGGSKGMIY 787
Query: 602 VDRN-SFRKLSLRRSMLKFESRNRM-LNVTKWSESMPCFLNREIISLLSTLGVKDEVFEA 659
VD RKL LR SM KF++ + + + V+ + +LNR ++ LL LGV+ F+
Sbjct: 788 VDPTLPGRKLLLRPSMNKFDAPDSLDIEVSNIPRASHMYLNRPLVMLLEDLGVRLSTFKQ 847
Query: 660 MQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQ-----------GYEPNVEP 708
+Q+ M + +AA + + + G++ + + L G + +
Sbjct: 848 LQED------TMAADLDAARHIGRFIIGMNQIGLGKRFYLSYVLGELADMEFGLRDDCQG 901
Query: 709 YLSMMLLSH--HE-------NQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVT 759
+L + H +Q +K + RI VP L+G DE IL GQ+ V
Sbjct: 902 DFGSLLDDYWYHGIVKSTLWDQFRKIKYQARIRVPDSWTLVGVLDEHQILQTGQIMAYV- 960
Query: 760 MTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMK---LEEKDY 816
+ E +F +KG VL+ ++P +HPGDV+++EAV L+ +
Sbjct: 961 ----QNEDYPNGYF---------LKGPVLICRSPVVHPGDVQMVEAVVPPDGSILDVERL 1007
Query: 817 VDCIIFPQKGERPHPNECSGGDLDGDIFFIS-WDNDLIPCETEPPMDYTGRRSRIMDHDV 875
+C+IF G R P+ GGDLDGD+F +S + I P T R ++ D +
Sbjct: 1008 PNCVIFSALGARSIPSCLGGGDLDGDLFHVSEYPYFRIKQPYLPAAYPTPERRKLKDREA 1067
Query: 876 TLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAP 935
T++++ F V+Y+ +D LG ++T HLV AD+ PD R+ KC+ LA LHS AVD+AKTG P
Sbjct: 1068 TIDDVADFVVEYINSDVLGLVATTHLVIADQHPDGVRAHKCMQLAELHSTAVDYAKTGIP 1127
Query: 936 AEMPLALKPKEF---PDFMERE-DKPR----YISFGVLGKLYRAT 972
+ + EF PD+ E D P Y S LG LYR
Sbjct: 1128 VPR-MRIPHYEFPAKPDWKADEVDDPTSADYYESQRALGHLYRGV 1171
>gi|409046075|gb|EKM55555.1| hypothetical protein PHACADRAFT_161565 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1108
Score = 221 bits (564), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 190/634 (29%), Positives = 294/634 (46%), Gaps = 102/634 (16%)
Query: 389 CYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRG 448
CY A VTP ++ GP E N VV+ +A + S+F+RV+F++E N L R
Sbjct: 323 CYHAKVTPSRLLLEGPFPERCNRVVRKYAGHTSNFLRVSFMDE-------NRLQYRFDRD 375
Query: 449 IFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWM---FASND-----E 500
+ + I R T+L +G+ I +H++FLA+S S L+N+SVW F +++
Sbjct: 376 VDGYDF---IRKRFGTLLFEGLWIAGRHFKFLAYSQSALKNHSVWFVRDFTAHENGTEVH 432
Query: 501 VSAEDVRGWMGCFNKI-------RSVSKCAARMGQLF------SSSKQTLVVPVQDVEMI 547
V+ + + +G F + R ++ AR+ Q F + V PV+D+
Sbjct: 433 VTVDSIIAGLGIFRNVPQDLELMRCPARYGARVAQAFTTTEAAVEVEVEEVFPVEDM--- 489
Query: 548 PDVEVTSDGNTY-CFSDGIGKISLSFARQV---AQKCGLSH------TPSAFQIRYGGYK 597
D N Y F+DGIG +S A + Q+ + H P AFQIR+ G+K
Sbjct: 490 ------MDPNGYRSFTDGIGLVSQELAADIWGALQEKSVRHRRYGRCMPRAFQIRFQGFK 543
Query: 598 GVIAVDRN-SFRKLSLRRSMLKFESRNRMLNVTKWSESMP--CFLNREIISLLSTLGVKD 654
G+++VD N S R + LR SM KFE+ M + + P +L+R + LL L V+
Sbjct: 544 GMLSVDHNLSGRAVCLRLSMKKFEAPESMTIEVASAFNKPGRLYLSRPLTMLLEGLKVRG 603
Query: 655 --EVFEAMQQQQLILLGKMLIN-REAALDVLQKLNGVDSKNILVKMLLQ----GYEPNVE 707
+F+ +Q + + + R+AA L + G+ + L + L G E +
Sbjct: 604 GFGIFKTLQDAVIKDTKEATRSFRQAA--TLWEAYGLGTAFKLSSIFLDLAKFGSEAIED 661
Query: 708 PYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELES 767
P+L L + L DLK RI VPKG L+G D G L G++F V
Sbjct: 662 PFLLQCLKFGIYHILRDLKYHARIPVPKGYSLVGVADIHGYLKEGEIFACVA-------- 713
Query: 768 KDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMK----LEEKDYVDCIIFP 823
QS+ + +HPGDV+V A+ +E+ + ++F
Sbjct: 714 --QSW-------------------SSTIHPGDVQVATAIGRPPPGTVFDEEPLTNTVVFS 752
Query: 824 QKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKF 883
+G RP + SGGDLDGD+F ++ L+P E P +Y + + + H T ++ F
Sbjct: 753 TRGTRPLASCLSGGDLDGDVFMLTTLEGLLPTEIYEPAEYASAQRKTVPHTSTRRDVADF 812
Query: 884 FVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEM---PL 940
++Y +D +G I ++ LV AD+ CL LA LHS A D+ KTG P M P
Sbjct: 813 ILEYFYSDNIGMIVSSWLVQADQSDQGIFDEACLTLAELHSDAADYPKTGNPVSMRKVPR 872
Query: 941 ALKPKEFPDFMEREDKPR----YISFGVLGKLYR 970
P PD+ E + R Y S +G+LYR
Sbjct: 873 YALPTMKPDWSAPEIQDRLGLFYQSQRSIGRLYR 906
>gi|171681273|ref|XP_001905580.1| hypothetical protein [Podospora anserina S mat+]
gi|170940595|emb|CAP65823.1| unnamed protein product [Podospora anserina S mat+]
Length = 1721
Score = 221 bits (564), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 161/497 (32%), Positives = 248/497 (49%), Gaps = 49/497 (9%)
Query: 463 LTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKC 522
+ +L+ GI I HY F S SQL++ + + +A + E + V +G F+K+++V+K
Sbjct: 123 IRLLRTGISIQGVHYNFYGHSNSQLKSRTCFFYAGSPEEISRKVND-LGDFSKMKTVAKK 181
Query: 523 AARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGL 582
A R+ LFS+ +++P + VE IPD+E T+D Y F+DG G IS + AR++A++ +
Sbjct: 182 AKRISLLFSTGSVAMLIPPERVEDIPDIE-TAD---YIFTDGCGLISPNLARELARRDRI 237
Query: 583 -----SHTPSAFQIRYGGYKGVIAVDRNSFRK-----------LSLRRSMLKFESRNRM- 625
+TPS FQIRY GYKGV+ VD+ R L LR+SM KF +
Sbjct: 238 IFRNRRYTPSVFQIRYRGYKGVVEVDQTMPRPKNKSSDAPPIWLKLRKSMKKFSGGDDYS 297
Query: 626 LNVTKWSESMP-CFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQK 684
+V ++S+ +LN E I LLS LG+ + F Q + L + + AA L
Sbjct: 298 FSVVEYSKPYTYGYLNDESILLLSALGITHKTFHQKQNEHFQFLEEATRDPRAAFRFLSY 357
Query: 685 LNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLK-SRCRIYVPKGRLLIGCF 743
N + K+L+ + + + ++ + + L+ +CRI +P+ RLL G
Sbjct: 358 AN---MPEMAEKILMADNVEHAQSKVKALVKAEYGKMLNKRDDQKCRILIPQSRLLFGVC 414
Query: 744 DETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKG-KVLVTKNPCLHPGDVRV 802
D L G+ V+VT+ D + + +KG +VLVT+NPCLHPGD++
Sbjct: 415 DAWDCLKEGECAVKVTLFE--------------DGQPAALKGMEVLVTRNPCLHPGDMQK 460
Query: 803 LEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMD 862
V +L DCI+F +G RP + SGGDLDGD FF+ WD +IP P
Sbjct: 461 FRVVERPELAH--LTDCIVFSSRGRRPAADLMSGGDLDGDTFFVCWDKSVIPSTMSEPAK 518
Query: 863 YTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHA-DRDPDKARSSKCLHLAT 921
Y G R I +T ++ +F Y N +LG + +L A R P + +C L
Sbjct: 519 YPGAREAISFKAITDDDRLVYFAKYN-NMSLGRVKKLYLAWARARGP---MAPECQELNR 574
Query: 922 LHSMAVDFAKTGAPAEM 938
L S VD P ++
Sbjct: 575 LFSQCVDGTIIRIPPKL 591
>gi|328874858|gb|EGG23223.1| RNA-directed RNA polymerase [Dictyostelium fasciculatum]
Length = 2645
Score = 220 bits (561), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 207/758 (27%), Positives = 345/758 (45%), Gaps = 97/758 (12%)
Query: 394 VTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKP 453
+TP + P + N ++ + A +F+ V FVEE+ ++ +SK
Sbjct: 1097 ITPTRTLFQKPSMYQLNRALRRYG--ADNFLLVHFVEENLD-----------EKVEYSK- 1142
Query: 454 YRTKIYSRILTILQDGIVI-GDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWM-- 510
++TK I IL +GI+I G + ++ SASQ R++S W +N+ + +R +
Sbjct: 1143 FQTK---SIENILLEGIMIEGIGRFHYIGNSASQARSSSCWF--TNNRNDIDTIRNQLVD 1197
Query: 511 -GCFNKIRSVSKCAARMGQLFSSSKQTLVVPV-QDVEMIPDVEVTSDGNTYCFSDGIGKI 568
I + K +G +FS + ++++P Q E + DV + F++GIG I
Sbjct: 1198 LSINTGIANPRKYLRSLGLVFSGTTPSIIIPNNQYNENLDDVR----NDEAIFTEGIGFI 1253
Query: 569 SLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSFRKLSLRRSMLKFESR----NR 624
+ A ++ + S++QIR GG KGV++V + + LR SM KF + NR
Sbjct: 1254 GKNLANKINAENSFPLGTSSYQIRIGGNKGVVSVHHSIENGIYLRNSMKKFNTNNSEMNR 1313
Query: 625 MLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQK 684
L + + C LNR+II+L LGV D +F + + L L +L + A L+
Sbjct: 1314 TLEIISIASKKNCTLNRQIINLFGGLGVPDRLFLMLVMECLEKLALILQDSSMARSELKN 1373
Query: 685 LNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFD 744
++ + K LL +P + +L + ++ QL+ C I + R L+G D
Sbjct: 1374 IDFFNQSEPTEKELL------YDPLIRRILHTLYKKQLTKYLDFCFIPIKNARTLLGVID 1427
Query: 745 ETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLE 804
ETG L QVFVR+T E+ +++ V V KNPCLHPGDV++
Sbjct: 1428 ETGTLEENQVFVRITADNNEI---------------IVIQSNVAVVKNPCLHPGDVQLAM 1472
Query: 805 AVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYT 864
V L +D ++F QKG P ++CSG DLDGD +F+ +D D++ + D+
Sbjct: 1473 GVDNQLLHH--MLDVVVFSQKGTIPLFSKCSGSDLDGDRYFVCFDTDMVNTIVQHK-DFC 1529
Query: 865 GRRSRIMDHDVTLEEIHK-----FFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHL 919
S+ D T++EI+K F++ LG I+ +HL A D + L
Sbjct: 1530 NLPSK---SDSTVKEINKDTVIQQFIENTQKGRLGQIALSHL--AISDYKSPTDDLAIEL 1584
Query: 920 ATLHSMAVDFAKTGAPAEMP-----LALKPKEFPDFMERE---DKPRYISFGVLGKLYRA 971
A H VDF KT +P L + +P FM+ +K S VLGK+Y
Sbjct: 1585 AIEHFKEVDFVKTNIHGTVPEQALELTNYGRRYPMFMKASVGANKEFSESTKVLGKIYN- 1643
Query: 972 TLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGAS 1031
Q S ++ + ++ D + V G+E ++ A + Y++E+ L + Y
Sbjct: 1644 ------QCSSLVSVAQYLPDSRVDESILVSGYEDYVEDARHQFKNYKKEIRYLRSKYNIE 1697
Query: 1032 TEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQN------EAKEWFGSSCKEN- 1084
E++I++ + N S D ++ + A + ++ ++KE G E+
Sbjct: 1698 KEEDIISSYMDNSMSGSSYSKNIVEDAYNQFSVLAVHYRDLFLLPFKSKESGGGVSDEDI 1757
Query: 1085 ------EHPQLASAWYHVTYSPSYCKERMALLSFPWIV 1116
E + SAWY V+Y ++ +LSF WIV
Sbjct: 1758 VIKYRQEIDKKVSAWYFVSYGDDKLEK---VLSFYWIV 1792
>gi|336388940|gb|EGO30084.1| RNA-directed RNA polymerase [Serpula lacrymans var. lacrymans S7.9]
Length = 1246
Score = 219 bits (558), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 167/570 (29%), Positives = 277/570 (48%), Gaps = 49/570 (8%)
Query: 397 MKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKL-----PANALSTSIQRGIFS 451
M+ Y L +T+ + F ++ SD + + + + +++ P+ + S ++ F
Sbjct: 1 MEPYVLRKRRQTT---IGKFVQFTSDAITLKWQDFPGNRIVHGDDPSKFILVSFEKLRFP 57
Query: 452 KPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMG 511
+ I+ +++ G+ + Y F S SQLR+ + + +N + + +G
Sbjct: 58 ESSLKVTSEYIVRLMKAGLFLNGLQYRFYHHSNSQLRSRTCFFREANSDEELDARIYKLG 117
Query: 512 CFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLS 571
F +I +++K A R+G LFS+++ L + D + + D++ + G+ FSDG G ++
Sbjct: 118 DFGRIMNIAKRAKRIGLLFSAAEVDLQL---DPKWVTDIDDITVGDI-VFSDGCGLMAKR 173
Query: 572 FARQVAQKCGL-----SHTPSAFQIRYGGYKGVIAVDRNSFRK----LSLRRSMLKFES- 621
FA QV++ + +TP+ FQIRY GYKGV+ +D + + R+SM KF +
Sbjct: 174 FAVQVSKAKSIIFRNQRYTPTVFQIRYLGYKGVLMLDPKLDEEKKFLVKFRKSMKKFSTT 233
Query: 622 RNRMLNVTKWSESMP-CFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALD 680
++ +V +S+ LN +I+ LLS+LG+ DE F+A Q+ + + A+D
Sbjct: 234 EDKSFSVVGYSQPYSFGRLNNDIVVLLSSLGISDEKFQAKQRAYFEWIEGASHDAVKAID 293
Query: 681 VLQKLNGVDSKNILVKMLLQGYE-PNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLL 739
L L ++ ++LL G + P V + + + L + + R R+ + K RLL
Sbjct: 294 FLSSLGKY---SLAERLLLDGMDSPAVSKEIRALQNAEVAQFLKNNRPRTRMIIHKSRLL 350
Query: 740 IGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGD 799
G D G+L GQV +R+T +R T+ + G +LV +NPCLHPGD
Sbjct: 351 YGVCDPYGVLKEGQVQIRITSSR--------------GGATTPINGDILVVRNPCLHPGD 396
Query: 800 VRVLEAVYEMKLEEKDYVDCIIFP---QKGERPHPNECSGGDLDGDIFFISWDNDLIPCE 856
L AV L +DCI+F + G +P P SGGDLDGD FF+ WD DL+P
Sbjct: 397 CLKLRAVDHPSLSH--LLDCIVFATVGRPGHQPAPAMSSGGDLDGDKFFVCWDPDLVPSL 454
Query: 857 TEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKC 916
P DY + R+ DVT ++ +F Y N +L +S H PD A +C
Sbjct: 455 VHEPYDYPPNKERV-GKDVTRMDLATYFASYN-NMSLAKVSALHQKWVRSSPDGALCVQC 512
Query: 917 LHLATLHSMAVDFAKTGAPAEMPLALKPKE 946
L LHS +VD + P + L P E
Sbjct: 513 QELNALHSQSVDGGRIKIPDRL-LTPPPTE 541
>gi|403168646|ref|XP_003328239.2| hypothetical protein PGTG_09533 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375167590|gb|EFP83820.2| hypothetical protein PGTG_09533 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 1246
Score = 218 bits (556), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 186/647 (28%), Positives = 316/647 (48%), Gaps = 104/647 (16%)
Query: 377 SHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKL 436
+H ++ + C +TP ++ GP++E SN +++ + + +F+RV+ +E +L
Sbjct: 422 NHLKIEGGDSFPCRTVTITPTRLSLQGPQIEQSNSILRLYQQ-TENFLRVSLADETGHRL 480
Query: 437 PANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWM-- 494
A S ++ + +R L G+++ + +EFL +S S L+++ W
Sbjct: 481 RA---SREVE-------IHHLLRNRYRPFLTKGMILCGRKFEFLGYSNSALKDHQAWFVC 530
Query: 495 -FASNDE-VSAEDVRGWMGCFNK-IRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVE 551
F D+ V+A +R +G F+K IR ++ AR+ Q F+S++++L + +V + DVE
Sbjct: 531 PFYKGDQLVTAASIRAKLGDFSKVIRIPARYMARIAQAFTSTRRSLTLRPSEVTRMDDVE 590
Query: 552 VTSDGNTYCFSDGIGKISLSFARQVAQKCGL-----SHTPSAFQIRYGGYKGVIAVDRNS 606
N CF+DG+G IS +V + + S + + +QIR GG+KG++++D
Sbjct: 591 ----RNGSCFTDGVGTISKDLVDEVHRVLNVGNIRKSISSTCYQIRLGGFKGMLSLDPTL 646
Query: 607 FRKL-SLRRSMLKFESRNRM-LNVT-KWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQ 663
K+ +R SM KF++ + + L++ +++ + +LNR +I LL LG+ EVF +Q +
Sbjct: 647 KGKVVRMRPSMDKFDAPDSLTLDIAGTFTKPLVAYLNRPLIKLLEDLGIPSEVFLRLQDK 706
Query: 664 QLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYE-------PNVEPYLSMMLLS 716
+++K+ S L L+Q Y P++ LS +L+
Sbjct: 707 -----------------IIRKVENSRSSPKLAGNLMQQYSMGSGSGMPSMLHKLSELLVD 749
Query: 717 HHENQ---------------LSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMT 761
+ L DLK R RI + K L+G DE L ++V V
Sbjct: 750 DRAVESDFIEECYDLMTVQCLRDLKYRGRIPLDKSYTLVGVADEDNFLPPDSIYVCVQTP 809
Query: 762 REELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEE----KDYV 817
+ ++G VT++P LHPGDVRV+ AV ++ + V
Sbjct: 810 ---------------NSAPMYLEGSFAVTRSPSLHPGDVRVVNAVGKLDPKRAPRLSSLV 854
Query: 818 DCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIP--CETEPPMDYTGRRSRIMDHDV 875
+C+ FP +GER P+ GGDLDGD+F + L+P + + Y+ R +D D
Sbjct: 855 NCVAFPIQGERSLPSCLGGGDLDGDLFTVIGLPQLVPKRSKIQRAASYSPPEMRKLDRDC 914
Query: 876 TLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAP 935
T+ + FF+DY+ +D +G I+T HL AD+ P+ + C+ LA LHS AVD+ KTG P
Sbjct: 915 TIADGADFFLDYISSDLVGMIATRHLHIADQCPEGTLNESCIKLAELHSDAVDYPKTGVP 974
Query: 936 AEM------PLALKPKEFPDFM------EREDKPRYISFGVLGKLYR 970
+ P+ +K PDFM +E + Y S VLGKL+R
Sbjct: 975 VNIRSLPNPPVRMK----PDFMCHEHDSSKEGEDYYESPNVLGKLFR 1017
>gi|392567096|gb|EIW60271.1| RdRP-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 1228
Score = 218 bits (556), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 189/634 (29%), Positives = 303/634 (47%), Gaps = 60/634 (9%)
Query: 383 DHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALS 442
D C+ TP ++ GP + SN V++ FA + F+RV F +ED L
Sbjct: 421 DMGKFQCHHITFTPTRVILEGPYVSVSNRVIRQFAGFEDHFVRVDFRDED-------RLQ 473
Query: 443 TSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMF-----AS 497
R + T + R+ IL+ G +G + YEFLA+S+S LR ++VW +
Sbjct: 474 YRWAREVDGT---TLLTERVGGILKHGFELGGRQYEFLAYSSSALREHAVWFMNPFEHPT 530
Query: 498 NDEVSAEDVRGWMGCF-NKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDG 556
V A+ +R +G F N I+ SK AAR+ Q F+++ ++ + E + D+E S+
Sbjct: 531 QGFVCAQRIRDSLGDFTNVIKQPSKYAARLAQAFTATDPSVSISRDQWEEMEDLE--SEQ 588
Query: 557 NTYCFSDGIGKISLSFARQVAQKC--------GLSHTPSAFQIRYGGYKGVIAVD-RNSF 607
Y F+DG+G IS + + + HTP A+QIR+ G+KGV+ +D R
Sbjct: 589 EDYLFTDGVGTISQELGDMIWEALCTAKESLRRVDHTPHAYQIRFLGFKGVVVIDKRLKG 648
Query: 608 RKLSLRRSMLKFESRN---RMLNVTKW-SESMPCFLNREIISLLSTLGVKDEVFEAMQQQ 663
K+ LR SM KFE + + + +W +LN+ +I +L GV+ + F +Q+
Sbjct: 649 IKMRLRPSMNKFEVPDMDIAPIEIARWFDRPGTSYLNKALIMILEDRGVEQKAFLKLQEM 708
Query: 664 QLILLGKMLINREAALDVLQKLNGVDSKNI---LVKMLLQGYEPNVEP----------YL 710
+ + +L+ N S NI L + G EP +L
Sbjct: 709 AAAQITTASDTITSTTLLLKAHNLGQSFNIPFVLKALRAAGLGMRGEPDSPAGDLGDTFL 768
Query: 711 SMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQ 770
+L+ + L D+K RI +P LL+G DE + V + ++ + Q
Sbjct: 769 RSLLIFAQHHILRDIKHGARIPIPDSYLLVGVADEGPVYEKEGVEDVFMLQEGQIYACIQ 828
Query: 771 SFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYV----DCIIFPQKG 826
+ D+K +KG V ++++P +HPGDV+ + A+ E ++ + + ++ P G
Sbjct: 829 ---NEADEKPVYLKGTVSISRSPVVHPGDVQRVWAIGEPPAGKECFFRGLKNVVVLPSVG 885
Query: 827 ERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYT--GRRSRIMDHDVTLEEIHKFF 884
+R + GGDLDGD++ I + LIP E P Y G RS D T+++I F
Sbjct: 886 KRSLASMLGGGDLDGDLYSIIKYDPLIPIEHAEPGSYVSVGTRSLPDGRDSTVDDICDFI 945
Query: 885 VDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEM--PLAL 942
V+Y+ +D LG +S HL+ AD+ D CL LA L S AVD+ K G P ++ L
Sbjct: 946 VEYINSDVLGLLSDRHLIIADQSKDGTSDPACLELARLCSQAVDYPKNGVPVDIFDSPKL 1005
Query: 943 KPKEFPDFMEREDK-PR----YISFGVLGKLYRA 971
+E PD+ + ED PR Y S LG+L+R+
Sbjct: 1006 LIREKPDWKKAEDSDPRDTDYYFSSRALGELFRS 1039
>gi|409051493|gb|EKM60969.1| hypothetical protein PHACADRAFT_168316 [Phanerochaete carnosa
HHB-10118-sp]
Length = 968
Score = 218 bits (555), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 156/537 (29%), Positives = 268/537 (49%), Gaps = 59/537 (10%)
Query: 385 NVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTS 444
+ C VTP GP E SN V++ ++ F+RV FV+E L
Sbjct: 426 DTFDCLHVTVTPTTHRPEGPYPERSNRVMRTYSNNHDCFVRVNFVDE-------TDLQFR 478
Query: 445 IQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVW-----MFASND 499
R + + + I R+ +L +GIV+ +++EFLA+S S L+ ++VW +
Sbjct: 479 FDREVDGRAF---IKRRVGEVLANGIVVAGRYFEFLAYSQSALKEHAVWFVKEFLLPDGT 535
Query: 500 EVSAEDVRGWMGCFNKIRSVSKCAARMG----QLFSSSKQTLVVPVQDVEMIPDVEVTSD 555
V+A + +G F + R + C AR G Q F+++ ++ V ++V +PD+E +
Sbjct: 536 VVNACTIIAGLGDFTRDRQLIYCPARYGARISQAFTATDSSVTVEAEEVIEVPDIEDPT- 594
Query: 556 GNTYCFSDGIGKISLSFARQV-----AQKCG--LSHTPSAFQIRYGGYKGVIAVDRN-SF 607
T+CF+DG+G +S+ AR++ A++ G P A QIR+ G KG+++VD S
Sbjct: 595 -GTWCFTDGVGTMSVRLAREIWKVLAARRRGSRWQTYPRALQIRFQGSKGMLSVDHTLSG 653
Query: 608 RKLSLRRSMLKFES--RNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQL 665
R + LR SM+KFE+ N++ ++ P +LNR +I +L LGV+ EVF+ +Q +
Sbjct: 654 RAICLRPSMIKFEALNSNQIEVARAFNRPGPFYLNRPLIMILEHLGVQHEVFQDLQDAAV 713
Query: 666 ILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEP-----YLSMMLLSHHEN 720
+ + + + E A +L+ G+ + L + L ++ V P + M+ +
Sbjct: 714 MDAQQSVESLEKAARLLETF-GLGASFRLTSVFLSLHKLAVGPLTEDNFWRKMMDFAVNH 772
Query: 721 QLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKT 780
L +LK RI VP L+G D G L +VF + T D T
Sbjct: 773 VLRELKHHARIPVPNAWNLVGVADVHGYLEEHEVFGCIYPT----------------DGT 816
Query: 781 SIV--KGKVLVTKNPCLHPGDVRVLEAVYE----MKLEEKDYVDCIIFPQKGERPHPNEC 834
+ G+VLVT++P +HPGDV+V++ + E + + ++F KG RP P+
Sbjct: 817 GPIYLDGRVLVTRSPTIHPGDVQVVQGIGRPPPGSPFERESLRNTLVFSVKGTRPLPSYL 876
Query: 835 SGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMIND 891
GGDLDGD + ++ + L+P T P YT +++D T++++ F ++Y+ +D
Sbjct: 877 GGGDLDGDEYRVTMLDPLLPPRTYLPASYTPAEKKLLDRPSTMKDVADFVMEYINSD 933
>gi|336364173|gb|EGN92535.1| hypothetical protein SERLA73DRAFT_99065 [Serpula lacrymans var.
lacrymans S7.3]
Length = 1660
Score = 218 bits (555), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 163/555 (29%), Positives = 270/555 (48%), Gaps = 46/555 (8%)
Query: 412 VVKNFAKYASDFMRVTFVEEDWSKL-----PANALSTSIQRGIFSKPYRTKIYSRILTIL 466
+ F ++ SD + + + + +++ P+ + S ++ F + I+ ++
Sbjct: 38 TIGKFVQFTSDAITLKWQDFPGNRIVHGDDPSKFILVSFEKLRFPESSLKVTSEYIVRLM 97
Query: 467 QDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARM 526
+ G+ + Y F S SQLR+ + + +N + + +G F +I +++K A R+
Sbjct: 98 KAGLFLNGLQYRFYHHSNSQLRSRTCFFREANSDEELDARIYKLGDFGRIMNIAKRAKRI 157
Query: 527 GQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGL---- 582
G LFS+++ L + D + + D++ + G+ FSDG G ++ FA QV++ +
Sbjct: 158 GLLFSAAEVDLQL---DPKWVTDIDDITVGDI-VFSDGCGLMAKRFAVQVSKAKSIIFRN 213
Query: 583 -SHTPSAFQIRYGGYKGVIAVDRNSFRK----LSLRRSMLKFES-RNRMLNVTKWSESMP 636
+TP+ FQIRY GYKGV+ +D + + R+SM KF + ++ +V +S+
Sbjct: 214 QRYTPTVFQIRYLGYKGVLMLDPKLDEEKKFLVKFRKSMKKFSTTEDKSFSVVGYSQPYS 273
Query: 637 -CFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILV 695
LN +I+ LLS+LG+ DE F+A Q+ + + A+D L L ++
Sbjct: 274 FGRLNNDIVVLLSSLGISDEKFQAKQRAYFEWIEGASHDAVKAIDFLSSLG---KYSLAE 330
Query: 696 KMLLQGYE-PNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQV 754
++LL G + P V + + + L + + R R+ + K RLL G D G+L GQV
Sbjct: 331 RLLLDGMDSPAVSKEIRALQNAEVAQFLKNNRPRTRMIIHKSRLLYGVCDPYGVLKEGQV 390
Query: 755 FVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEK 814
+R+T +R T+ + G +LV +NPCLHPGD L AV L
Sbjct: 391 QIRITSSR--------------GGATTPINGDILVVRNPCLHPGDCLKLRAVDHPSLSH- 435
Query: 815 DYVDCIIFP---QKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIM 871
+DCI+F + G +P P SGGDLDGD FF+ WD DL+P P DY + R+
Sbjct: 436 -LLDCIVFATVGRPGHQPAPAMSSGGDLDGDKFFVCWDPDLVPSLVHEPYDYPPNKERV- 493
Query: 872 DHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAK 931
DVT ++ +F Y N +L +S H PD A +C L LHS +VD +
Sbjct: 494 GKDVTRMDLATYFASYN-NMSLAKVSALHQKWVRSSPDGALCVQCQELNALHSQSVDGGR 552
Query: 932 TGAPAEMPLALKPKE 946
P + L P E
Sbjct: 553 IKIPDRL-LTPPPTE 566
>gi|281205109|gb|EFA79302.1| hypothetical protein PPL_07720 [Polysphondylium pallidum PN500]
Length = 3481
Score = 217 bits (553), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 168/585 (28%), Positives = 280/585 (47%), Gaps = 73/585 (12%)
Query: 372 SIPLSSHKRLIDHNVMSCY--RALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFV 429
+IP + + N C+ +A VTP +I P + +N ++ F F+ V
Sbjct: 1123 NIPPRAKSNVKPLNANFCWIKKAYVTPSRILFQRPLMVQTNRAIRLFG--PDRFLMVQIT 1180
Query: 430 EEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGI-VIGDKHYEFLAFSASQLR 488
EE +S SI Y+ I +L L DGI V G Y FL +S SQLR
Sbjct: 1181 EE--------TISDSID-------YQPLISKLMLDKLIDGIAVAGYGQYHFLGYSNSQLR 1225
Query: 489 NNSVWMFASN------DEVSAEDVRGWMGCFNKIRSVSKCAAR-MGQLFSSSKQTLVVPV 541
N+ W + + D S +DV+ + I + + R + +F S+ +L++P
Sbjct: 1226 KNTCWFYCPDAIDSLDDAPSLDDVKQILIGDTSIYTEPRQYLRSLSLVFPSTTPSLLIPA 1285
Query: 542 QDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIA 601
+ + +PDV + G FSDGIG I A QV + L AFQIR GYKGV+
Sbjct: 1286 EHIHEVPDVVSANTGQ--IFSDGIGYIGKRVALQVIEFASLPEETCAFQIRIAGYKGVVT 1343
Query: 602 VDRNSFRKLSLRRSMLKFES-----RNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEV 656
+ + LR SM KF++ N +L + + PC LNR++I+LLS LGV D+
Sbjct: 1344 IHPTIDDGIYLRPSMKKFQADLTQQHNCILEIISINGDNPCHLNRQVINLLSGLGVPDQY 1403
Query: 657 FEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLS 716
F +Q++ L+ L +L N ++ + L + + ++ + +P + ++
Sbjct: 1404 FLRLQKEALMDLADLLHNPAESIRCSEDLPWLRT--------IEKEDLRSDPMIRSLVHL 1455
Query: 717 HHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRV 776
++ +++ +C I + G+ +IG DETG+L GQV++ + T+
Sbjct: 1456 VYQKSIAEYSDKCFIPIANGKTIIGVLDETGLLEAGQVYINIYNTK-------------- 1501
Query: 777 DDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYV-DCIIFPQKGERPHPNECS 835
+ ++ +++G V V KNPCLHPGDVR+L+ +E ++ + ++F +G+ P +CS
Sbjct: 1502 NGQSMVIQGAVAVCKNPCLHPGDVRILQGT---DIELLSHLKNVVVFSARGDNPDFKKCS 1558
Query: 836 GGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEE--IHKFFVDYMINDTL 893
G DLDGD +FI +D ++I + DY + + + + I ++ + TL
Sbjct: 1559 GSDLDGDRYFICYDPEVISTVRQYE-DYHYEDPIKVKQTIPINQSTILAQYLKSIDKGTL 1617
Query: 894 GAISTAHLVHADR----DPDKARSSKCLHLATLHSMAVDFAKTGA 934
G I+ +HL +DR DP + L+ HS+ VD KTG
Sbjct: 1618 GKIALSHLAVSDRLTPLDP------LAIALSIQHSIEVDSPKTGV 1656
>gi|116200327|ref|XP_001225975.1| hypothetical protein CHGG_08319 [Chaetomium globosum CBS 148.51]
gi|88179598|gb|EAQ87066.1| hypothetical protein CHGG_08319 [Chaetomium globosum CBS 148.51]
Length = 1176
Score = 216 bits (551), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 191/621 (30%), Positives = 284/621 (45%), Gaps = 77/621 (12%)
Query: 384 HNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALST 443
N +RA+VTP +I GPE E N V++ + + S F+R F +E+ L NA +
Sbjct: 421 QNRALIFRAVVTPSRITLHGPEPEPMNRVLRKYPDH-SYFIRTQFCDENGQDLFFNARVS 479
Query: 444 SIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFA-----SN 498
IY R ++L +GI + + Y+ L FS S LR +S W+ A
Sbjct: 480 L-----------DSIYDRFKSVLSNGIQVAGRVYKLLGFSHSSLRAHSAWLSAPFFHQGQ 528
Query: 499 DEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNT 558
++ V G +G F+KI+S ++ AAR+GQ FS + + + VE+ ++ N
Sbjct: 529 VQIPTLIVTG-LGNFDKIKSPARRAARIGQAFSETPWAIDLVAHSVEVWEIDDIVR--NE 585
Query: 559 YCFSDGIGKISLSFARQVAQKCGLSHT-PSAFQIRYGGYKGVIAVDRNSFRK-LSLRRSM 616
FSDG+GK+S AR V S P+ FQIR G KG++A+D K + +R SM
Sbjct: 586 EVFSDGVGKLSQDVARLVYDVIPRSKGFPTCFQIRQAGAKGMLAIDPGLGGKVICIRPSM 645
Query: 617 LKFESRNRMLNVTKW-SESMPCFLNREIISLLSTLGVKDEVFEAMQQ---QQLILLGKML 672
KF+S ++ L + S MP LNR++I +L +G ++ F +Q Q+L + +
Sbjct: 646 SKFDSTDKQLEICDMASNPMPMVLNRQLIKILEDMGAPNQWFLNLQSRELQRLRTISSTV 705
Query: 673 INREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIY 732
N + L + + L ++ G + + +L + + ++L LK + RI
Sbjct: 706 YNTASFLRAQRIGESIRLHKFLRQIETMGLDYRRDDFLRGAVEAVLLSELRLLKHKARIP 765
Query: 733 VPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKN 792
V G L G DETG L G+V+ VT EE D+ S
Sbjct: 766 VRNGMTLFGIMDETGFLKEGEVY--VTFDPEE-------------DRHS----------Q 800
Query: 793 PCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDL 852
P PG RVL + GER N+ SGGDLDGD+F I WD +
Sbjct: 801 P---PGPGRVLSSSAIASSSASG----------GERSPSNQLSGGDLDGDVFHIIWDPAV 847
Query: 853 I-PCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKA 911
+ T P Y + +D VT E+I FFVD+M D LG I+T H++ AD+
Sbjct: 848 VNAVRTFKPAAYPRVQPLELDRPVTPEDIAAFFVDFMRTDHLGVIATRHMILADQREKGT 907
Query: 912 RSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPR---YISFGVLGKL 968
C LA LHS A+ A +M P+ D + + PR Y S +LG+L
Sbjct: 908 LDGDCKKLAELHSAAITIHDKSA-IDMEEHFAPRGD-DDDDDDSGPRHQYYRSDKILGQL 965
Query: 969 YRATLDSIMQIRSNAIWSEKI 989
YRA + IW+E I
Sbjct: 966 YRA-------VEEQKIWAEDI 979
>gi|353237176|emb|CCA69155.1| related to RNA-directed RNA polymerase (RdRP) [Piriformospora indica
DSM 11827]
Length = 1262
Score = 216 bits (551), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 201/753 (26%), Positives = 344/753 (45%), Gaps = 108/753 (14%)
Query: 394 VTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKP 453
+TP + GP SN V++ + +++ F+RV F +E+ L R +
Sbjct: 473 ITPTTMRLEGPHHGQSNGVIRRYVEHSEHFLRVNFTDEE-------RLQIRWDRDVDGTS 525
Query: 454 YRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFAS-----NDEVSAEDVR- 507
+ + R+ L++G IG +H++FLA+S S LR +S+W A N++V+AE +R
Sbjct: 526 F---VRERVGNFLKNGFDIGGRHFDFLAYSNSGLREHSMWFVAPFRDRYNNQVNAEIIRN 582
Query: 508 ----------GWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEV----- 552
G F + +K AR+ Q FS+++ + + +VE+ D+ V
Sbjct: 583 LIMDIELQKGGDTAEFKLEKQPAKFGARLAQAFSTTEPAIELKEDEVEIKEDIMVDPKFT 642
Query: 553 TSDGNTYC--FSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRN-SFRK 609
DG F+DG G +SL+ ++ + +R GG KGV+ ++ RK
Sbjct: 643 KPDGPKTATEFTDGYGCMSLAVRDEIWRALNPG-------VRLGGAKGVLGINPTLEGRK 695
Query: 610 LSLRRSMLKFESRNRMLNVT-KWSESMPCFLNREIISLLSTLGVKDEVFE-----AMQQQ 663
+ L RSM+KF+S++ L++ K+ + FLNR +I++L LGV+ + F+ A +
Sbjct: 696 VVLHRSMVKFKSKDYGLHIAFKFDHPLKLFLNRPLIAILEHLGVQIDWFKRLLVNAQSKM 755
Query: 664 QLILL------GKMLINREAAL--DVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLL 715
LL + +R L D+ + L ++ K + ++ LQ Y+ + L
Sbjct: 756 NSTLLSIDEGAAEFFESRRLGLPFDLPRILRSLE-KYEVTRVKLQEYDHPFNDFWLRCLD 814
Query: 716 SHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHR 775
+ +LK + RI VP G L+G D L +V++ ++E + + + F +
Sbjct: 815 VAKAHIDRELKYKARIPVPFGCSLVGVPDVHMELEADEVYI----CKQERDREPKWFPEK 870
Query: 776 VDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMK---LEEKDYVDCIIFPQKGERPHPN 832
G V +T++P +HPGDV+ +A + + V+ ++F KG RP +
Sbjct: 871 --------PGYVYITRSPSIHPGDVQKFKAKHPPRGSVYYNHPVVNAVVFSCKGARPPAS 922
Query: 833 ECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDT 892
GGD+DGD+F I + E PP Y + ++ T+E+I F V+Y+ +D
Sbjct: 923 MLGGGDVDGDLFQIIPEKPDFKLEVGPPASYEVEDTLTLERPTTIEDIADFVVEYINSDK 982
Query: 893 LGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPA---EMPLALKPKEFPD 949
+G ++ HL+ AD+ KCL LA LHS AVDFAK+G P ++P P PD
Sbjct: 983 MGLVAIQHLILADQSNSGLHDPKCLKLAELHSKAVDFAKSGKPVSFQDLPKRYFPYT-PD 1041
Query: 950 FMEREDK-----PRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYD-------HD 997
F +E + Y S LG LYR I IR + + + ++D H
Sbjct: 1042 FQHKETRFDDQTSYYESPKALGVLYRM----IKHIREVPERDKIVYDPTFDPVEHPITHA 1097
Query: 998 LEVDGFEAFLGVAES--HKEM-------YEEEMNALMNYYGAS----TEDEILTGNLRNR 1044
L G + ++ HKE Y E+ ++ Y TE+E++ G +
Sbjct: 1098 LLFIGRPYCPSIQDALVHKERVMRTFYEYARELKSIRRIYTIGRTPLTEEEVVMGTILQA 1157
Query: 1045 ASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWF 1077
+S +R DM ++ A L ++ + F
Sbjct: 1158 SS----QTKRRDDMASKVRDVAGMLVDQVRHAF 1186
>gi|240282192|gb|EER45695.1| RNA-dependent RNA polymerase [Ajellomyces capsulatus H143]
Length = 396
Score = 216 bits (550), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 136/388 (35%), Positives = 218/388 (56%), Gaps = 29/388 (7%)
Query: 456 TKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNK 515
+++Y+R+ ILQ GI+IGD+HYEFLAF SQ R + + FAS ++A ++R MG N
Sbjct: 2 SEVYARVTRILQHGIIIGDRHYEFLAFGNSQFREHGAFFFASLPHLTAANIRAQMGDLNN 61
Query: 516 IRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQ 575
I+ V+K AAR+GQ FS+++ PVQ ++ + D+E N Y FSDG+G++S +
Sbjct: 62 IKVVAKYAARLGQCFSTTRAVTSCPVQ-LKEVDDIE----RNGYVFSDGVGRLSHFLTQM 116
Query: 576 VAQKCGLS----HTPSAFQIRYGGYKGVIAVDRNSF-RKLSLRRSMLKFESRNRMLNVTK 630
+ G++ PSAFQ R GG KG++AV ++ +++ +R+S KF + + L + +
Sbjct: 117 IRSDLGINTPSGQPPSAFQFRLGGCKGILAVSSDAHGQEVHIRKSQYKFAAAHHGLEIIR 176
Query: 631 WSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDS 690
S LNR++I +LS LGV D+VF A + + L + + N E A+ +LQ VD
Sbjct: 177 HSHFSLATLNRQLILVLSCLGVPDKVFIAKLRMMMDKLEQAMTNEEQAVHLLQ--THVDP 234
Query: 691 KN---ILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETG 747
IL M+ G++ + EP++S +L Q+ LK + +I + +G L+GC DET
Sbjct: 235 NQMTLILADMVRDGFQGSKEPFVSSLLELWRTWQIKYLKEKAKIAIDEGAFLLGCIDETK 294
Query: 748 ILNYGQVFVRVT-----MTREELESKDQSFFHRV----DDKTSIVKGKVLVTKNPCLHPG 798
L + + R + T EE + F +V + K I++G ++ +NP LHPG
Sbjct: 295 TL---KGYFRSSRPGQDATYEESVACLPEIFVQVWRHSEGKYVIIEGVCILARNPSLHPG 351
Query: 799 DVRVLEAVYEMKLEEKDYVDCIIFPQKG 826
D+RV++AV L D ++ PQ G
Sbjct: 352 DIRVVKAVNAPSLHH--LRDVVVLPQLG 377
>gi|299753212|ref|XP_002911846.1| calcium:hydrogen antiporter [Coprinopsis cinerea okayama7#130]
gi|298410195|gb|EFI28352.1| calcium:hydrogen antiporter [Coprinopsis cinerea okayama7#130]
Length = 1681
Score = 216 bits (550), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 198/741 (26%), Positives = 333/741 (44%), Gaps = 105/741 (14%)
Query: 300 LSHEVLFQLNSLVHNQ--KVSLVAADAELIQILSGLSMET--ALMVLQKLHKLKSICYDP 355
L V FQ+ +L+ N L+ + ++ L+ M+ A V + L K +
Sbjct: 794 LPWHVAFQMEALLLNGLLHTKLIQDLLDQVEALAAKHMKNNNAHYVGEVLRKFNEVLQSR 853
Query: 356 VSFVKTQLHVLG--RNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVV 413
++ + Q H L N S K +D C TP ++ GP SN ++
Sbjct: 854 LNIPEVQEHPLTIFENVLS-KFEYAKPSLDRGTFPCCHVTFTPTRVLLEGPCPTQSNRII 912
Query: 414 KNFAKYASDFMRVTFVEED-----WSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQD 468
+ +A + F+RV F +ED W + + +F + R+ T+L+
Sbjct: 913 RKYAGFEDKFLRVDFRDEDRLQYRWDR--------EVDGSVF-------VRDRVGTVLKL 957
Query: 469 GIVIGDKHYEFLAFSASQLRNNSVWMFASNDE----VSAEDVRGWMGCFNK---IRSVSK 521
G + + +EFLA+S+S LR ++VW + + V AE +R +G F ++ S
Sbjct: 958 GFELAGRTFEFLAYSSSALREHAVWFMSPFKKDGVIVDAESIRNSVGDFKGTELLKRPSM 1017
Query: 522 CAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCG 581
AAR+ Q F+++ ++ + + E + D+ Y F+DG+G IS + A ++ G
Sbjct: 1018 YAARLAQAFTATDPSVKIRRGEWEDVDDL----GEKPYLFTDGVGTISSALADRIWAAVG 1073
Query: 582 LSHT--PSAFQIRYGGYKGVIAVDRN-----SFRKLSLRRSMLKFESRNRMLNVT----- 629
+ P AFQIR+ GYKG+++VD+ ++ LR SM KFE++ +
Sbjct: 1074 RKNQRRPDAFQIRFLGYKGMVSVDKELDNHPHGIQMRLRPSMRKFENKGEEEDAEIEIAQ 1133
Query: 630 KWSESMPCFLNREIISLLSTLGVKDEVF---------------EAMQQQQLILLGKMLIN 674
+S +LNR ++ LL LG + E F E+++Q Q + G L
Sbjct: 1134 SFSSPNAAYLNRPLVMLLEDLGARKEDFLRLQNLEIADACTIDESLEQFQKFMSGHGLGR 1193
Query: 675 REAALDVLQKLNGVDSKNILVKMLLQGYEPNVE-PYLSMMLLSHHENQLSDLKSRCRIYV 733
+L+KL N+ + + +++ P+L ++ + L D+K RI +
Sbjct: 1194 PFGFQYLLRKL-----WNLGLDLSSNKKGSSIDTPFLHLLRSVAINDVLRDIKHSARIKI 1248
Query: 734 PKGRLLIGCFDETGIL---NYGQVF------VRVTMTREELESKDQSFFHRVDDKTSIVK 784
P LL+G DE Y V+ + + R E DD+ + ++
Sbjct: 1249 PDSYLLVGIADEGPAYEKRGYKNVYSLREGNIYACIQRHE------------DDEPTYIQ 1296
Query: 785 GKVLVTKNPCLHPGDVRVLEAVYE----MKLEEKDYVDCIIFPQKGERPHPNECSGGDLD 840
G V ++++P H GDV+ + A+ E M + + ++ P G+R + GGD+D
Sbjct: 1297 GTVSISRSPVAHRGDVQRVYAIGEPPAGMFCAFRGLRNVVVLPSVGDRSLASCLGGGDVD 1356
Query: 841 GDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAH 900
GD+F + + L+P ET P Y ++ +D D T+E+I F V+Y+ +D LG +S
Sbjct: 1357 GDMFSVITCDALLPSETFEPSAYESAGTKTLDRDSTVEDICDFVVEYINSDVLGLLSDRL 1416
Query: 901 LVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEF----PDFMERE-D 955
L+ AD+ D CL LA L S AVD+ K G P ++ P+ PD+ E
Sbjct: 1417 LIIADQSKDGFSDEACLALAELCSQAVDYPKQGIPVDLDSNDLPRTLIRCKPDWHAAEVV 1476
Query: 956 KPR----YISFGVLGKLYRAT 972
PR Y S LG LYRA
Sbjct: 1477 SPRETDYYRSTRALGFLYRAV 1497
>gi|389741441|gb|EIM82629.1| RdRP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 1527
Score = 215 bits (548), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 161/511 (31%), Positives = 247/511 (48%), Gaps = 56/511 (10%)
Query: 463 LTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKC 522
L Q G+ + Y F S SQLR+ ++ +N + + V G F KI +V+K
Sbjct: 41 LRFFQAGLFLNGVQYRFYGHSNSQLRSGGCFLRRANSDEELDQVVYAKGDFGKIMNVAKR 100
Query: 523 AARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGL 582
A R+G LFS ++ ++ Q I D+++ + FSDG G IS + Q+++K G+
Sbjct: 101 AKRIGLLFSGAEVDYMLDPQYTGDIDDLKIGDE----VFSDGCGLISRWLSVQISKKKGI 156
Query: 583 SH-----TPSAFQIRYGGYKGV----IAVDRNSFRKLSLRRSMLKFESRNRML-NVTKWS 632
H TP FQIRY GYKGV +D + R+S KF + + M+ ++ +S
Sbjct: 157 VHNRRRYTPCVFQIRYRGYKGVQMLHPPLDAAKIHQAEFRKSQKKFTATDDMIFSIVDYS 216
Query: 633 ESMP-CFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKM---------LINREAALDVL 682
+ LN EI LLS+LGV ++ F A+QQ+ + + L + D+
Sbjct: 217 KPHTFGRLNNEITILLSSLGVTNDDFVALQQEYFDWVQRASSDPVHAFELFSTLGKHDIA 276
Query: 683 QK--LNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLI 740
++ L+G+DS I VK + ++ + H E + K R R+ + K R L
Sbjct: 277 ERVLLDGLDSPTI-VKQIRSAQAAEIQAF-------HKEGDAT--KERVRMLIRKSRRLF 326
Query: 741 GCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDV 800
G D G+L GQV VR+T++R ++I V+V +NPCLHPGD+
Sbjct: 327 GVCDPFGVLKEGQVHVRITVSRA--------------GASTINHLDVIVVRNPCLHPGDI 372
Query: 801 RVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPP 860
L AV +L VDC++FP G+R P+ SGGDLDGD +F+ WD L+P +
Sbjct: 373 LKLRAVDHPQLSH--LVDCVVFPSVGKRAAPSMSSGGDLDGDEYFVCWDPRLVPKKISES 430
Query: 861 MDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLA 920
Y + + +T +++ + F Y N + + H A PD A S +C L
Sbjct: 431 YTYPPNKE-FTQNKITRQDLARHFASYN-NSGMAKAAKYHNKWARYPPDGALSKECQELN 488
Query: 921 TLHSMAVDFAKTGAPAEMPLALKPKEFPDFM 951
L+S AVD A+ PA L P+ PDF+
Sbjct: 489 ALYSQAVDGARVSIPAR--LTEVPESRPDFI 517
>gi|389748402|gb|EIM89579.1| RdRP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 1346
Score = 215 bits (548), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 190/648 (29%), Positives = 310/648 (47%), Gaps = 86/648 (13%)
Query: 389 CYRALVTPMKIYCLGPELETSNYVVKNFAK----YASDFMRVTFVEEDWSKLPANALSTS 444
C+ TP + GP SN V++ + + + +F+RV F +ED LS
Sbjct: 423 CHHITFTPTRTILEGPNPTQSNRVIRKYQEIDPTFTENFIRVDFRDED-------RLSYR 475
Query: 445 IQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFA-------- 496
R + + + R+ IL++G + + +EFLA+S S LR ++VW
Sbjct: 476 WDRDVDGTYF---LQQRVGHILKNGFELAGRDFEFLAYSTSALREHAVWFVHPFHLPSSH 532
Query: 497 ---SNDEVSAEDVRGWMGCF-NKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEV 552
S V+ +R +G F N IR SK AAR+ Q F+++ ++ V E + D+
Sbjct: 533 PSHSGTYVNGHYIRQSLGDFSNVIRQPSKYAARIAQAFTATDPSVKVTRDQWEEMEDI-- 590
Query: 553 TSDGNTYCFSDGIGKISLSFARQV-AQKC-------GLSHTPSAFQIRYGGYKGVIAVD- 603
D + Y +DG+G ISL + A+ C G + PSA+QIR+ GYKG++ +D
Sbjct: 591 -GDDDRYLHTDGVGTISLELGGMIWAELCESRLDHGGNTVRPSAYQIRFLGYKGMVVIDH 649
Query: 604 RNSFRKLSLRRSMLKF---ESRNRMLNVTKWSESMPCF-LNREIISLLSTLGVKDEVFEA 659
R K+ LR SM KF + L + + E F LNR ++ +L GV+ E F +
Sbjct: 650 RLVGIKMRLRPSMRKFVVDNDEDAWLEIARAFERPNSFSLNRALVMILEDRGVRKESFIS 709
Query: 660 MQQQQLILLGKMLINREAALDVLQKLNGVDSKNI------LVKMLLQGYEPNVE------ 707
+Q+Q L+ + E + +L+ ++ LVK+ L E N +
Sbjct: 710 LQEQTKSLIYTSSDSIEKFVSLLRTHGMGFGYHLPFILEQLVKLGLDFKETNRDGSKAIE 769
Query: 708 -PYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELE 766
+L +L L D+K + +I VP L+GC DE G ++R + ++ +
Sbjct: 770 NAFLGRVLRFAMNGCLRDIKHKAQIPVPGSYKLVGCADE------GLAYIREGLDKDSVY 823
Query: 767 SKDQS-FFHRVDD----KTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEE----KDYV 817
+ F V + +T +KG +++++P +HPGD++ + AV E ++ KD
Sbjct: 824 TLPAGCIFACVQEGPGSETKFLKGPCMISRSPVVHPGDIQRVWAVGEPPKDKICFFKDLK 883
Query: 818 DCIIFPQKGE------RPHPNECSGGDLDGDIFFISWDN-DLIPCETEPPMDYTGRRSRI 870
+ ++ P + R + GGDLDGD + I DN L+P P DYTG +R
Sbjct: 884 NLVVLPSVADPSSDTDRSLASMLGGGDLDGDQYDIIIDNGSLMPEVHSQPADYTGAGTRT 943
Query: 871 MDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFA 930
+D D T+++I F V+Y+ +D LG +S HL AD+ + +C+ LA L S AVD+
Sbjct: 944 LDRDATVDDICDFIVEYINSDVLGLLSDKHLTIADQSREGTFDHRCMLLAELCSQAVDYP 1003
Query: 931 KTGAP---AEMPLALKPKEFPDFMERE-DKPR----YISFGVLGKLYR 970
K G P +++P +L + PD+ + E PR Y S LG L+R
Sbjct: 1004 KNGKPVDISDLPRSLS-RFKPDWHQAEVSGPRENDYYESDRALGHLFR 1050
>gi|452978294|gb|EME78058.1| hypothetical protein MYCFIDRAFT_145022 [Pseudocercospora fijiensis
CIRAD86]
Length = 1703
Score = 215 bits (547), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 164/506 (32%), Positives = 254/506 (50%), Gaps = 46/506 (9%)
Query: 462 ILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSK 521
+ +L+ G+V+ Y F S SQL++ S ++FA++ EV E V + F+ ++SV K
Sbjct: 109 VARLLKTGVVLNGLAYHFFGHSNSQLKSRSCFLFAASKEVIKEKVEA-LADFSNMQSVGK 167
Query: 522 CAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCG 581
A R+G LFSS++ L + + I DV++ Y F+DG G I++ A+QVAQ+
Sbjct: 168 KAKRLGLLFSSAEHALELQPERCTDIDDVKL----GDYVFTDGCGLIAVRLAKQVAQRKR 223
Query: 582 L-----SHTPSAFQIRYGGYKGVIAVDRN--SFRKLSLRRSMLKFES-RNRMLNVTKWSE 633
+ + PS QIRY GYKGV+ +D ++ R+SM K + ++ +V + S+
Sbjct: 224 IVYRNKRYLPSVLQIRYRGYKGVLMIDPTLTGQTQVLFRKSMKKLKDVKDLSFSVVEHSK 283
Query: 634 SMP-CFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINR-EAALDVLQKLNGVDSK 691
FLN EI+ LL+ LGV + + Q + L L + AA L N +D
Sbjct: 284 PYTFGFLNDEIVVLLNALGVSTDTILSKQTEYLQFLDEAYNGEPRAAFRFLSYQNELD-- 341
Query: 692 NILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLK-SRCRIYVPKGRLLIGCFDETGI-- 748
+ K+L++G +V L ++ + + L+ + RCRI + + RLL G D TG
Sbjct: 342 -LAEKLLIEGVH-SVRKSLRSLVKTEYSRMLNKYEEQRCRIMLTQSRLLFGVCDPTGRDG 399
Query: 749 ----LNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLE 804
L G FVR+T+ + + +++ +VLVT+NPCLHPGD++
Sbjct: 400 GMSRLPPGTCFVRITLDGD-------------GEPRTLINTEVLVTRNPCLHPGDLQKFR 446
Query: 805 AVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYT 864
AV + VDCI+FP +G RP + SGGDLDGD FF++WD D+IP + Y
Sbjct: 447 AVDVPEFSH--LVDCIVFPIRGSRPSADLMSGGDLDGDKFFVTWDPDIIPKKIAEAAMYP 504
Query: 865 GRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHS 924
G + R ++T ++ ++F Y + +LG I +L A A S +C L L S
Sbjct: 505 GVKERHHFGEITGDDRAEYFARYR-STSLGKIKNLYLKWARL--KGAMSPECQQLNRLFS 561
Query: 925 MAVDFAKTGAPA--EMPLALKPKEFP 948
VD PA E P P P
Sbjct: 562 QCVDGNHVKVPAAFEDPPETPPDALP 587
>gi|395334238|gb|EJF66614.1| RdRP-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 1233
Score = 214 bits (546), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 181/659 (27%), Positives = 316/659 (47%), Gaps = 75/659 (11%)
Query: 374 PLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDW 433
PL+S +C R VTP + GP E SN V++ + F+RV+F +E
Sbjct: 417 PLTSFAAGDTSAPFNCLRLTVTPTTMILEGPFPERSNRVMRKYYHSQDCFLRVSFQDE-- 474
Query: 434 SKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVW 493
N L R + + + I R+ +L +GI I H+ FLA+S S L+ ++VW
Sbjct: 475 -----NRLQYRFNREVDGRRF---IDLRVKRVLLEGIRIAGAHFRFLAYSQSALKEHAVW 526
Query: 494 M---FASNDE------VSAEDVRGWMGCFNKI-------RSVSKCAARMGQLFSSSKQTL 537
F D V A + +G F+ + R ++ AAR+ Q F+++ +
Sbjct: 527 FVKPFRYRDSHQNVHFVDATTIIQSLGQFHNLPFDPTLMRCPARYAARISQAFTATDAAV 586
Query: 538 VVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQV----AQKCGLSHT----PSAF 589
+ V V M D++ + + F+DG+G +S A + + G + P AF
Sbjct: 587 SMAVGVVYMGRDIKGRNGKD--VFTDGVGTLSPMLAESIWKALQSRSGKTRKGKTYPRAF 644
Query: 590 QIRYGGYKGVIAVD-RNSFRKLSLRRSMLKFE-SRNRMLNVTK-WSESMPCFLNREIISL 646
Q+R+ G KG+++VD + + + LR SM+KF+ S++ ++ V + + +LNR +I L
Sbjct: 645 QVRFQGSKGMLSVDYKLTDNAIMLRPSMIKFDDSKSAIVEVARAFDRPGAYYLNRPLIML 704
Query: 647 LSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNV 706
L LGV F+ +Q + + + + + + + +G+ + ++L ++ +
Sbjct: 705 LEGLGVPYTTFKKLQDDAVRDAQTSVTSLKLSAKLFED-HGLGVSFRIAPVMLGLHKLGL 763
Query: 707 EP-----YLSMMLLSHHENQLSDLKSRCRIYVP--KGRLLIGCFDETGILNYGQVFVRVT 759
P + M+ + L +LK R RI VP L+G D L G++FV V
Sbjct: 764 GPLDDDIFWRQMMDFAVNHVLRELKHRARIPVPGTDSWTLVGVADIHRELKEGEIFVCVD 823
Query: 760 MTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMK----LEEKD 815
+E+ ++G +V+++P +HPGDV++ A+ + + +
Sbjct: 824 SPKEK--------------GLIFLEGPCVVSRSPTIHPGDVQIATAIGRPRPGSHYDVES 869
Query: 816 YVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDV 875
+ ++F G RP P+ GGDLDGD + ++ DL+P T P Y +++DH+
Sbjct: 870 LRNTVVFSTTGSRPLPSCLGGGDLDGDEYNVTTRPDLMPKRTYDPASYEPAPRKMVDHES 929
Query: 876 TLEEIHKFFVDYMINDTLGAISTAHLVHADR--DPDKARSSKCLHLATLHSMAVDFAKTG 933
T++++ +F +++ +DTLG I+T L+ AD+ D D + CL LA LHS+AVD+AKTG
Sbjct: 930 TMDDVAEFVAEFISSDTLGIIATNWLITADQTNDTDGILNPDCLRLAELHSLAVDYAKTG 989
Query: 934 APAEM------PLALKPK-EFPDFMEREDK-PRYISFGVLGKLYRATLDSIMQIRSNAI 984
P + PL +KP P+ ++ Y S +GKL+RA +Q A+
Sbjct: 990 QPVPIEQIPRPPLRIKPDWNAPETHSGKNSLSFYRSMTAVGKLFRAIDLPAVQTAERAV 1048
>gi|392575092|gb|EIW68226.1| hypothetical protein TREMEDRAFT_74213 [Tremella mesenterica DSM
1558]
Length = 1004
Score = 214 bits (545), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 180/590 (30%), Positives = 283/590 (47%), Gaps = 66/590 (11%)
Query: 394 VTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKP 453
VTP ++ P E SN V + +A +RV F +E+ + + S+
Sbjct: 346 VTPTRLLIGAPTPEPSNSVTRRYAGKIDSIIRVQFSDEE-----DRIFVQDYTKQVDSQR 400
Query: 454 YRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCF 513
+ +R+ L+ G+V+G + Y +A S+SQ + +++W F N E+ +++ WMG
Sbjct: 401 PDLGVMARVRRALRWGLVVGGRRYLPVASSSSQQKEHAMW-FIDNKEIDMLELQRWMGQV 459
Query: 514 NKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFA 573
++ ++K AARMG FS+S+ + + V IPDVE N +CF+DG+G
Sbjct: 460 DET-IIAKHAARMGLPFSTSR-IVEINVDIGLQIPDVE----RNGHCFTDGVGLAGFEVM 513
Query: 574 RQVAQ----KCGLSHTPSAFQIRYGGYKGVIAV--DRNSFRKLSLRRSMLKFESRNRMLN 627
R+ A+ + G++ TPSA Q R GG KG++A R ++ +R+SM+KF+S + LN
Sbjct: 514 REAARALGFREGINSTPSAIQFRLGGAKGMLAFWPGRVKDHEVKMRKSMVKFKSGLKDLN 573
Query: 628 VTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQ---K 684
V ++ I ++ G+ +++ + + + K L R A + + K
Sbjct: 574 VVRF------------IMIMCANGIPEQLMIDIFNDAVASI-KGLRERVATKTLSRDDHK 620
Query: 685 LNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFD 744
L S+ L+ ++ G+ N P + + L DLK R R+ +P G LIG D
Sbjct: 621 LISTCSEFPLLALIKAGFHEN--PMILDICSIVETRALQDLKWRARVRLPTGVFLIGIAD 678
Query: 745 ETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTS-IVKGKVLVTKNPCLHPGDVRVL 803
ETG L G+VF + + DD IV+ +V+V + P LHPGDVR
Sbjct: 679 ETGTLKEGEVFCQ---------------YQESDDTPPVIVESEVIVCRAPALHPGDVRRA 723
Query: 804 EAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDI--FFISWDNDLIPCETEPPM 861
AV L + + ++F +GER PN GGDLDGD F S + T P
Sbjct: 724 FAVDNPYL--RHLKNVLVFSVQGERDLPNMLGGGDLDGDAPQGFPSDELYGSSSATGPKG 781
Query: 862 DYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLAT 921
D T + VT D ND LG + HL +D + CL L+
Sbjct: 782 DSTAPQREFCSVMVT---------DDSQNDVLGQVDNCHLARSDWEDKGPFHPDCLELSE 832
Query: 922 LHSMAVDFAKTGAPAEMPLALKPKEFPDFMERE-DKPRYISFGVLGKLYR 970
+HS AVDF KTG A + +++PK +PDFM+++ K Y S +LG L+R
Sbjct: 833 IHSTAVDFPKTGQAAILDPSMRPKLWPDFMDKDATKKTYESQKILGILFR 882
>gi|403413304|emb|CCM00004.1| predicted protein [Fibroporia radiculosa]
Length = 1503
Score = 214 bits (545), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 184/635 (28%), Positives = 306/635 (48%), Gaps = 82/635 (12%)
Query: 389 CYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRG 448
C+ TP ++ GP + SN V++ + + F+RV F +ED L R
Sbjct: 409 CHHVTYTPTRMILEGPYVSQSNRVIRRYPDHQDHFLRVDFRDED-------RLQYRWARE 461
Query: 449 IFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMF-----ASNDEVSA 503
+ + ++ R+ +L+ G + +++EFLA+S S LR ++VW ++A
Sbjct: 462 VDGS---SLLFDRVGGVLRSGFELAGRYFEFLAYSQSALREHAVWFINPFYHPEEGHITA 518
Query: 504 EDVRGWMGCFNK-IRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFS 562
+ +R +G F+ IR SK AAR+ Q F+++ ++ + E +PD+ Y F+
Sbjct: 519 QTIRDSLGDFSGVIRQPSKYAARLAQAFTATDPSVRITRGQWEEMPDL----GEKPYEFT 574
Query: 563 DGIGKIS----------LSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRN-SFRKLS 611
DG+G IS L +R ++ GL PSA+QIR+ GYKG++ +D K+
Sbjct: 575 DGVGTISTELGNLIWDALCASRPENRRRGLK--PSAYQIRFLGYKGMVVIDEQLQGIKMH 632
Query: 612 LRRSMLKFESRNRMLNVTKWSESM----PCFLNREIISLLSTLGVKDEVFEAMQQ----- 662
LR SM KF + + L + + + +LNR +I +L GV + F +Q+
Sbjct: 633 LRPSMNKFRAHDDDLAEIEIARAFERPGTSYLNRPLIMILEDRGVDKKAFINLQERAKTD 692
Query: 663 ---------QQLILLGKMLINREAALD-VLQKLN--GVDSKNILVKMLLQGYEPNVEPYL 710
+ + +L + + LD +LQ L G+ K+ +LQ +P++
Sbjct: 693 IYTASDSITKSVSMLKAHTLGKSYGLDFILQSLQNIGMGFKHEKSIHVLQ------DPFI 746
Query: 711 SMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQ 770
++ + L D+K RI +P LL+G DE G +V M K +
Sbjct: 747 ERLIHYSKNHVLRDIKHGARIPIPDSYLLVGVADE------GPAYVHAGMENVFCLKKGE 800
Query: 771 SF--FHRVDD-KTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEE----KDYVDCIIFP 823
F DD + + +KG V+++++P +HPGDV+ + A+ ++ ++ + ++ P
Sbjct: 801 IFACVQNADDPEPTYLKGSVVISRSPVVHPGDVQRVWAIGSPPPDKVCFFRNLKNVVVLP 860
Query: 824 QKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKF 883
G R + GGDLDGD++ I L+P E E P Y +R +D D T+ +I F
Sbjct: 861 SAGGRSLASCLGGGDLDGDLYSIIKHGPLLPTEHEDPASYLSAGTRTLDRDSTIADICDF 920
Query: 884 FVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEM---PL 940
V+Y+ +D LG +S HL+ AD+ +KCL LA L S AVD+ K G P ++ P
Sbjct: 921 VVEYLNSDVLGLLSDRHLIIADQSKHGTNDTKCLSLAELCSQAVDYPKNGIPVDIHDSPH 980
Query: 941 ALKPKEFPDFMERED-KPR----YISFGVLGKLYR 970
L P + PD+ + ED PR Y S LG L+R
Sbjct: 981 WLIPYK-PDWHQAEDAAPRHTDYYESHRALGDLFR 1014
>gi|409079686|gb|EKM80047.1| hypothetical protein AGABI1DRAFT_72859 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1258
Score = 214 bits (544), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 187/648 (28%), Positives = 311/648 (47%), Gaps = 81/648 (12%)
Query: 385 NVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTS 444
++ C TP ++ GP SN +++ ++ Y F+RV F +ED L
Sbjct: 421 DIFRCRHVTFTPTRMLMEGPYATQSNRIIRQYSGYEEFFIRVDFRDED-------RLQYR 473
Query: 445 IQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWM---FASND-- 499
R + + + R+ TIL+DG I + +EFLA+S+S LR ++VW F +D
Sbjct: 474 WNREVDGASF---VRERVGTILKDGFTIAGRQFEFLAYSSSALREHAVWFMCPFEHHDPK 530
Query: 500 --EVSAEDVRGWMGCF---NKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTS 554
V + +R +G F + ++ SK AAR+ Q F++++ ++ + + E I D++ +
Sbjct: 531 YGRVDSMKIREQIGNFKGTDLMKQPSKYAARLAQAFTATEASVSIKRDEWEEIEDIKPPN 590
Query: 555 --DG--NTYCFSDGIGKISLSFARQV-AQKCGL-------SHTPSAFQIRYGGYKGVIAV 602
DG N Y F+DG+G IS S ++ A+ C S PSA+QIR+ GYKGV+AV
Sbjct: 591 FEDGKPNPYLFTDGVGSISKSLGDKIWAELCSNRRDHGENSIQPSAYQIRFLGYKGVVAV 650
Query: 603 DRN-----SFRKLSLRRSMLKFESRNRMLNVTKWSESMP----CFLNREIISLLSTLGVK 653
D + + + LR SM KF N + + +++ C+LNR ++ LL LGV
Sbjct: 651 DEQLDKTGAGKHMRLRNSMRKFLVVNDDVAPIEIAQAFAHPNRCYLNRPLVMLLEDLGVN 710
Query: 654 DEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSK---NILVKML------LQGYEP 704
+ F +Q +++ + + + L V+ + +G+ + LVK L + +P
Sbjct: 711 VDAFLTLQDKEVAKARTIHDSIDRFLSVISE-HGLGRSFRFSYLVKQLQGLGLEINSKDP 769
Query: 705 ---NVE-PYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTM 760
NV+ P+L + + + D+K RI VP LL+G DE G +V
Sbjct: 770 DKLNVDTPFLKQVREVAMMDVMRDIKHSARILVPDSHLLVGIADE------GPAYVSAGF 823
Query: 761 TREELESKDQSFFHRV-----DDKTSIVKGKVLVTKNPCLHPGDVRVLEAV---YEMKLE 812
E + F + D K ++G LVT++P H GDV+ + A+ + KL
Sbjct: 824 --ENVYCLPPGFIYACVQESPDGKAEWLEGHCLVTRSPVAHIGDVQRVRAIGKPPQGKLC 881
Query: 813 EKDYV-DCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIM 871
++ + ++ +G R + GGD+DGD+F + L+P E PM+Y ++ +
Sbjct: 882 LFSHIKNALVMSSQGNRSLASCLGGGDVDGDLFQVIQYEPLLPMTYELPMEYESVGTKAI 941
Query: 872 DHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAK 931
+ T+++I F V+Y+ +D LG +S L+ AD+ C+ LA L S AVD+ K
Sbjct: 942 TTECTVDDICDFVVEYINSDVLGLLSDRLLMIADQSKLGMNDKDCIRLAELCSQAVDYPK 1001
Query: 932 TGAPAEMPLALKPKEF----PDFMERE-DKPR----YISFGVLGKLYR 970
G P ++ P PD+ E PR Y S LG+LYR
Sbjct: 1002 NGIPVDLNKEKLPHTLIRCKPDWHAAEVVSPRETDYYRSTRALGELYR 1049
>gi|426198551|gb|EKV48477.1| RNA-dependent RNA polymerase [Agaricus bisporus var. bisporus H97]
Length = 1258
Score = 214 bits (544), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 225/822 (27%), Positives = 377/822 (45%), Gaps = 107/822 (13%)
Query: 385 NVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTS 444
++ C TP ++ GP SN +++ ++ Y F+RV F +ED L
Sbjct: 421 DIFRCRHVTFTPTRMLMEGPYATQSNRIIRQYSGYEEFFIRVDFRDED-------RLQYR 473
Query: 445 IQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWM---FASND-- 499
R + + + R+ TIL+DG I + +EFLA+S+S LR ++VW F +D
Sbjct: 474 WNREVDGASF---VRERVGTILKDGFTIAGRQFEFLAYSSSALREHAVWFMCPFEHHDPK 530
Query: 500 --EVSAEDVRGWMGCF---NKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVT- 553
V + +R +G F + ++ SK AAR+ Q F++++ ++ + + E I D++
Sbjct: 531 YGRVDSMKIREQIGNFKGTDLMKQPSKYAARLAQAFTATEASVSIKRDEWEEIEDIKPPK 590
Query: 554 -SDG--NTYCFSDGIGKISLSFARQV-AQKCGL-------SHTPSAFQIRYGGYKGVIAV 602
DG N Y F+DG+G IS S ++ A+ C S PSA+QIR+ GYKGV+AV
Sbjct: 591 FEDGKPNPYLFTDGVGSISKSLGDKIWAELCSNRRDHGENSIQPSAYQIRFLGYKGVVAV 650
Query: 603 DRN-----SFRKLSLRRSMLKFESRNRMLNVTKWSESMP----CFLNREIISLLSTLGVK 653
D + + + LR SM KF N + + +++ C+LNR ++ LL LGV
Sbjct: 651 DEQLDKTGAGKHMRLRNSMRKFLVVNDDVAPIEIAQAFAHPNRCYLNRPLVMLLEDLGVN 710
Query: 654 DEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSK---NILVKML------LQGYEP 704
+ F +Q +++ + + + L V+ + +G+ + LVK L + +P
Sbjct: 711 VDAFLTLQDKEVAKARTIHDSIDRFLSVISE-HGLGRSFRFSYLVKQLQGLGLEINSKDP 769
Query: 705 ---NVE-PYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTM 760
NV+ P+L + + + D+K RI VP LL+G DE G +V
Sbjct: 770 DKLNVDTPFLKQVREVAMMDVMRDIKHSARILVPDSHLLVGIADE------GPAYVSAGF 823
Query: 761 TREELESKDQSFFHRV-----DDKTSIVKGKVLVTKNPCLHPGDVRVLEAV---YEMKLE 812
E + F + D K ++G LVT++P H GDV+ + A+ + KL
Sbjct: 824 --ENVYCLPPGFIYACVQESPDGKAEWLEGHCLVTRSPVAHIGDVQRVRAIGKPPQGKLC 881
Query: 813 EKDYV-DCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIM 871
++ + ++ +G R + GGD+DGD+F + L+P E PM+Y ++ +
Sbjct: 882 LFSHIKNALVMSSQGNRSLASCLGGGDVDGDLFQVIQYEPLLPMTYELPMEYESVGTKAI 941
Query: 872 DHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAK 931
+ T+++I F V+Y+ +D LG +S L+ AD+ C+ LA L S AVD+ K
Sbjct: 942 TTECTVDDICDFVVEYINSDVLGLLSDRLLMIADQSKLGMNDKDCIRLAELCSQAVDYPK 1001
Query: 932 TGAPAEMPLALKPKEF----PDFMERE-DKPR----YISFGVLGKLYR----ATLDSIMQ 978
G P ++ P PD+ E PR Y S LG+LYR + +
Sbjct: 1002 NGIPVDLNKEKLPHTLIRCKPDWHAAEVVSPRETDYYRSTRALGELYRNISLTEPEPMKP 1061
Query: 979 IRSN-AIWSEKIAEASYDH------DLEVDGFEAFLGVAESHKEMYEEEMN------ALM 1025
+ N ++ + I++ D DL + E + +++ Y EE+N L
Sbjct: 1062 VSKNFELFRDPISQVLSDRVEFYIGDLVLPTTEVDQTLEDTYSR-YLEELNYIRFTHTLS 1120
Query: 1026 NYYGAS-TEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNE---AKEWFGSSC 1081
N GA E E++ G + + S + + R M+ + K ++NE KE+ G
Sbjct: 1121 NTPGAKLLEAEVVAGTILAKCSQKRWRSDRIYRMRLHTINLVKEVKNELLTQKEYHGF-- 1178
Query: 1082 KENEHPQLASAWYHVTYSPSYCKERMALLSFPWIVGDILLNI 1123
E L AW S + E A SF +I D++ I
Sbjct: 1179 -EELVEGLIRAWRAWELSQKHINEDGA-NSFGFIALDVIFFI 1218
>gi|299752904|ref|XP_001832921.2| RNA-dependent RNA polymerase [Coprinopsis cinerea okayama7#130]
gi|298410053|gb|EAU88888.2| RNA-dependent RNA polymerase [Coprinopsis cinerea okayama7#130]
Length = 1251
Score = 214 bits (544), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 187/657 (28%), Positives = 309/657 (47%), Gaps = 114/657 (17%)
Query: 388 SCYRAL---VTPMKIYCLGPELETSNYVVKNF-AKYASDFMRVTFVEEDWSKLPANALST 443
S Y++L VTP I+ GP E SN V++ + ++ S F+RVTF +E +L +
Sbjct: 430 SNYQSLHVTVTPTAIFLEGPYPEQSNRVIRAYDPQHHSSFLRVTFADE--GRLQYRSSDR 487
Query: 444 SIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASND---- 499
+ F + +R IL +G+ I + +EFLA+S S L+ +SVW D
Sbjct: 488 QVDHKAF-------VRARFGDILLNGLEIAGRRFEFLAYSMSALKEHSVWFVKPFDVIEN 540
Query: 500 ----EVSAEDVRGWMGCFNKI-------RSVSKCAARMGQLFSSSKQTLVVPVQDVEM-- 546
V+A+ + +G F+ + ++ AAR+ Q F+++ + VQD+E+
Sbjct: 541 GHRVTVTADSIIQSLGTFDGLDFEPRLMHCPARYAARISQAFTAT-DLCTIEVQDLEITV 599
Query: 547 IPDVEVTSDGNTYCFSDGIGKISLSFARQV--AQKCGLSHTPSAFQIRYGGYKGVIAVDR 604
I D+EVTS G+ + +DG+G +S +R + A P+A Q+R GG KG+++VD
Sbjct: 600 IDDIEVTSGGHKWTHTDGVGTMSPMASRAIWKALPKRKGPAPAADQVRIGGAKGMLSVDY 659
Query: 605 N-SFRKLSLRRSMLKFESRNR-MLNVTK-WSESMPCFLNREIISLLSTLGVKDEVFEAMQ 661
+ K+ LR SM+KFE+ R + + + + P +LNR +I +L LGV FE Q
Sbjct: 660 TLTGHKICLRPSMVKFEAPTRKYIEIARAFDRPTPYYLNRPLIMILEGLGVPYSTFEHFQ 719
Query: 662 QQQLILLGKMLINREAALDVLQKLNGVDS------------KNILVKMLLQGYEPNVEPY 709
+ + R+AA + + + +DS N L ++ ++ P+
Sbjct: 720 DRAV------RETRQAASSLRRAASMLDSYGLGSSFRLSSVMNSLDRLGIRHLNPDKFYS 773
Query: 710 LSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKD 769
+M +H L DLK+ RI +P L+G D L G++F V T E
Sbjct: 774 KAMEFAINH--VLRDLKNHARIPIPGAWTLVGVADVHRFLQPGEIFAYVKPTNE------ 825
Query: 770 QSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYE----MKLEEKDYVDCIIFPQK 825
+ F+ ++G +L++++PC+HPGDVR+ A+ E + + ++F
Sbjct: 826 KGFY---------LEGDILISRSPCIHPGDVRITRAIGPPPPGSPFEREPLANTVVFNVL 876
Query: 826 GERPHPNEC-SGGDLDGDIFFISWDND-----LIPCETEPPMDYTGRRSRIMDHDVTLEE 879
C GGDLDGD + + +D P P Y R ++ T+ +
Sbjct: 877 A------SCLGGGDLDGDTYNLLPLSDPALQGFRPTRIPEPSQYAPAEKRYLEEKSTMRD 930
Query: 880 IHKFFVDYMINDTLGAISTAHLVHADR--------------DPDKAR--SSKCLHLATLH 923
+ +F ++Y+++D LG +S + AD+ DPD S C+ LA LH
Sbjct: 931 VAEFVLEYILSDVLGMVSINWRIIADQSRHAYLATYPTANGDPDSTGIFDSDCMLLADLH 990
Query: 924 SMAVDFAKTGAPAE---MPLALKPKEFPDFMERE-------DKPRYISFGVLGKLYR 970
S AVD+ K+G P + +P LK K PD+ E + Y+S LGKL+R
Sbjct: 991 SAAVDYPKSGTPVDFKKIP-RLKHKLKPDWNAPETLDAQALSEKYYVSSTALGKLFR 1046
>gi|409083384|gb|EKM83741.1| hypothetical protein AGABI1DRAFT_66661 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1198
Score = 213 bits (543), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 200/733 (27%), Positives = 334/733 (45%), Gaps = 94/733 (12%)
Query: 304 VLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICY---------- 353
V FQL SL+ N +V AEL+++L + + KL Y
Sbjct: 302 VAFQLASLLQN----MVLDTAELLELLPRVRELVRVKGRTYTAKLLRAFYNNSIAQWHSD 357
Query: 354 DPVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVV 413
DP V + R+ + + D + ++TP + GP E SN V+
Sbjct: 358 DPGEPVMSSFEATKRDFEKQENTLTLVPEDGSYYQSLHVIITPTTMSLQGPYPEQSNRVL 417
Query: 414 KNF-AKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVI 472
+ + +K F+RVTF ++ N L R + + I R+ L+ G+ I
Sbjct: 418 RRYDSKNHESFLRVTFRDD-------NYLQLRFDRDVDGPSF---IRDRVGRFLKQGLSI 467
Query: 473 GDKHYEFLAFSASQLRNNSVWMF-----ASNDEVSAEDVRGWMGCFNKIR-------SVS 520
+ + FLA+S S L+ +SVW A +V A+ + +G F+ + +
Sbjct: 468 AGRTFTFLAYSQSALKEHSVWFVKKFHNAPYGDVDAKTIIDSLGTFDNLSYDPTLKLCPA 527
Query: 521 KCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQV---- 576
+ AAR+ Q F+++ VV V++V + D++ TSDG Y F+DG+G +S AR +
Sbjct: 528 RYAARISQAFTATDAA-VVSVEEVLNLDDIK-TSDGK-YVFTDGVGTMSQDLARAIWGKL 584
Query: 577 ---AQKCGLSHT-PSAFQIRYGGYKGVIAVDR--NSFRKLSLRRSMLKFESRN----RML 626
+K G S P A+Q+R+ G KG++++D N ++LR SM KFE+ + + +
Sbjct: 585 RSAKRKSGRSSDYPHAYQVRFLGSKGMLSIDHTLNGAHTIALRPSMTKFEAESGSGEQEI 644
Query: 627 NVTK-WSESMPCFLNREIISLLSTLGVKDEVFEAMQQQ--QLILLGKMLINREAALDVLQ 683
+ + + +LNR +I+LL LG+ VF Q Q + +++ A L
Sbjct: 645 EIARAFDRPTAYYLNRPLITLLEGLGIPTNVFLKFQNDAVQETRSATLTLSKAARLLETH 704
Query: 684 KLNGV----DSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLL 739
L + L K+ L + P+ +L + L DLK RI VP L
Sbjct: 705 GLGASFRLPATMTSLAKLGLGSIHDD--PFYGKLLQIAVHHVLRDLKHHARIPVPDAWTL 762
Query: 740 IGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGD 799
+G D L G+VF V K Q+ ++G +L++++P +HPGD
Sbjct: 763 VGVADVHSYLEEGEVFACV---------KHQT------RGIIFLEGLLLISRSPTIHPGD 807
Query: 800 VRVLEAVYEMK----LEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFI---SWDNDL 852
V++++A+ + + ++F KG RP P+ GGDLDGDI+ + D
Sbjct: 808 VQIVKAIGVPPEGSCFAREPLHNTVVFSVKGRRPLPSCLGGGDLDGDIYNVLPLKEHPDF 867
Query: 853 IPCE-TEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKA 911
+P T P +Y + +++D T++++ F ++Y+I+D +G I+ L+ AD+ P
Sbjct: 868 MPRRATYKPAEYAPTQRKLLDQPSTMDDVADFVMEYIISDVVGIIAINWLIIADQSPAGI 927
Query: 912 RSSKCLHLATLHSMAVDFAKTGA---PAEMP---LALKPK-EFPDFMEREDKPRYISFGV 964
CL LA LHS AVD+ K+G P +P +KP P+ + + Y S
Sbjct: 928 EDEDCLRLAQLHSDAVDYPKSGRAVNPESIPKLKFPMKPDWNAPETINPDSANYYQSRKA 987
Query: 965 LGKLYR-ATLDSI 976
+G L+R LD I
Sbjct: 988 VGVLFREVKLDEI 1000
>gi|426201566|gb|EKV51489.1| RNA-dependent RNA polymerase [Agaricus bisporus var. bisporus H97]
Length = 1198
Score = 212 bits (539), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 199/733 (27%), Positives = 334/733 (45%), Gaps = 94/733 (12%)
Query: 304 VLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICY---------- 353
V FQL SL+ N +V AEL+++L + + KL Y
Sbjct: 302 VAFQLASLLQN----MVLDTAELLELLPRVRELVRVKGRTYTAKLLRAFYNNSIAQWHSD 357
Query: 354 DPVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVV 413
DP V + R+ + + D + ++TP + GP E SN V+
Sbjct: 358 DPGEPVVSSFEATKRDFEKQENTLTLVPEDGSYYQSLHVIITPTTMSLQGPYPEQSNRVL 417
Query: 414 KNF-AKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVI 472
+ + +K F+RVTF ++ N L R + + I R+ L+ G+ I
Sbjct: 418 RRYDSKNHESFLRVTFRDD-------NYLQLRFDRDVDGPSF---IRDRVGRFLKQGLSI 467
Query: 473 GDKHYEFLAFSASQLRNNSVWMF-----ASNDEVSAEDVRGWMGCFNKIR-------SVS 520
+ + FLA+S S L+ +SVW A +V A+ + +G F+ + +
Sbjct: 468 AGRTFTFLAYSQSALKEHSVWFVKKFHNAPYGDVDAKTIIDSLGTFDNLSYDPTLKLCPA 527
Query: 521 KCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQV---- 576
+ AAR+ Q F+++ VV V++V + D++ TSDG Y F+DG+G +S AR +
Sbjct: 528 RYAARISQAFTATDAA-VVSVEEVLNLDDIK-TSDGK-YVFTDGVGTMSQDLARAIWGKL 584
Query: 577 ---AQKCGLSHT-PSAFQIRYGGYKGVIAVDR--NSFRKLSLRRSMLKFESRN----RML 626
+K G S P A+Q+R+ G KG++++D N ++LR SM KFE+ + + +
Sbjct: 585 RSAKRKSGRSSDYPHAYQVRFLGSKGMLSIDHTLNGAHTIALRPSMTKFEAESGSGEQEI 644
Query: 627 NVTK-WSESMPCFLNREIISLLSTLGVKDEVFEAMQQQ--QLILLGKMLINREAALDVLQ 683
+ + + +LNR +I+LL LG+ VF Q Q + +++ A L
Sbjct: 645 EIARAFDRPTAYYLNRPLITLLEGLGIPTNVFLKFQNDAVQETRSATLTLSKAARLLETH 704
Query: 684 KLNGV----DSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLL 739
L + L K+ L + P+ +L + L DLK RI +P L
Sbjct: 705 GLGASFRLPATMTSLAKLGLGSIHDD--PFYGKLLQIAVHHVLRDLKHHARIPIPDAWTL 762
Query: 740 IGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGD 799
+G D L G+VF V K Q+ ++G +L++++P +HPGD
Sbjct: 763 VGVADVHSYLEEGEVFACV---------KHQT------RGIIFLEGLLLISRSPTIHPGD 807
Query: 800 VRVLEAVYEMK----LEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFI---SWDNDL 852
V++++A+ + + ++F KG RP P+ GGDLDGDI+ + D
Sbjct: 808 VQIVKAIGVPPEGSCFAREPLHNTVVFSVKGRRPLPSCLGGGDLDGDIYNVLPLKEHPDF 867
Query: 853 IPCE-TEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKA 911
+P T P +Y + +++D T++++ F ++Y+I+D +G I+ L+ AD+ P
Sbjct: 868 MPKRATYEPAEYAPTQRKLLDQPSTMDDVADFVMEYIISDVVGIIAINWLIIADQSPAGI 927
Query: 912 RSSKCLHLATLHSMAVDFAKTGA---PAEMP---LALKPK-EFPDFMEREDKPRYISFGV 964
CL LA LHS AVD+ K+G P +P +KP P+ + + Y S
Sbjct: 928 EDEDCLRLAQLHSDAVDYPKSGRAVNPELIPKLKFPMKPDWNAPETINPDSANYYQSRKA 987
Query: 965 LGKLYR-ATLDSI 976
+G L+R LD I
Sbjct: 988 VGVLFREVKLDEI 1000
>gi|393247227|gb|EJD54735.1| RdRP-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 1217
Score = 211 bits (537), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 198/686 (28%), Positives = 308/686 (44%), Gaps = 109/686 (15%)
Query: 373 IPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEED 432
+PL H + ++ S V+P + +GP + N V+ + Y +F+RV FV+ D
Sbjct: 378 LPLDMHIGRLSRSMSSILHVSVSPANVSIIGPIPDDLNRVLYQYRAYHENFIRVAFVDND 437
Query: 433 WSKLPANALSTSIQRGIFSKPYR--------TKIYSRILTILQDGIVIGDKHYEFLAFSA 484
+P+R + + +L IL+DG+ +G + ++FLA+S
Sbjct: 438 ------------------GQPFRYDPDVNTQALVDAHVLPILRDGLTLGGRLFKFLAYSQ 479
Query: 485 SQLRNN--SVWMFASNDEV-----SAEDVRGWMGCFNKI-RSVSKCAARMGQLFSSSKQT 536
S L+ + VW+ + + SA +R +G F K R ++ ARM FS++ +
Sbjct: 480 SGLKQHWEQVWLVHTFTDALGHTHSASTIRASLGTFTKDERCPARVGARMSLAFSATVPS 539
Query: 537 LVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKIS-LSFARQVAQKCG----------LSHT 585
+ V + +PD+ DG+T C +DG G IS + R C L
Sbjct: 540 GSLSVARLRNLPDI--GGDGHT-CMTDGAGLISRAAMDRAWIHFCAARGRRGRTAELPPA 596
Query: 586 PSAFQIRYGGYKGVIAVDRN-SFRKLSLRRSMLKFESRNRMLNV---TKWSESMPCFLNR 641
PS Q+R G KGV+ VD ++ +R SM+KF + + N+ ++ FLNR
Sbjct: 597 PSVIQVRVKGAKGVLLVDPTLQGLRIVVRPSMVKFSAGEQYDNIEICNAFTAPSRAFLNR 656
Query: 642 EIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGV-DSKNI--LVKML 698
+I +L GV E F +QQQ ++ ++ + L + NG+ +S N+ L++ +
Sbjct: 657 PLIMVLEARGVPKETFLWLQQQ-VVAETQLAVQSLLPAAALLESNGLGESLNLPTLLRRI 715
Query: 699 LQGYE--PNVEPYL-------SMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGIL 749
+ P VE +L + L + L LK R RI VP L+G D GIL
Sbjct: 716 ASRFANFPEVEQHLVAEDAFMTRCLDFAVNHVLRGLKFRGRIPVPDSWTLVGVPDHHGIL 775
Query: 750 NYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEM 809
G+V V + M + L + +KG V VT++P HPGDV V+ A+
Sbjct: 776 EEGEVLVGI-MDGDPL-------------RLRYLKGGVTVTRSPVCHPGDVMVMRAIGPP 821
Query: 810 K----LEEKDYVDCIIFPQKGERPHPNEC-SGGDLDGDIFFISWDNDLIPCETEPPMDYT 864
+ E +CI+F KG R P C GGD DGD + + + P E P Y
Sbjct: 822 RAGSAFELLRPKNCIVFSTKGSR-SPVSCLGGGDYDGDEYVVMKPAYMRPPEPAAPAMYK 880
Query: 865 GRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHS 924
+ + E++ K D++ ND L I+ L AD P +CL L+ LHS
Sbjct: 881 NSPRQDIGRRYRKEDLLKVVPDFINNDQLPRIAATWLRIADISPQGVYDPRCLKLSALHS 940
Query: 925 MAVDFAKTGAP---AEMPLALKPKEFPD--------------FMEREDKPRYISFGVLGK 967
+AVDF KTG P A++P A P FPD FM+R Y S LG
Sbjct: 941 IAVDFPKTGIPVKHADIPQA--PNMFPDWSMSELGAADHNKSFMDRI----YPSDRALGH 994
Query: 968 LYRA-TLDSIMQIRSNAIWSEKIAEA 992
LYRA +L ++ + R+ + A+A
Sbjct: 995 LYRAISLPAVGEARTEGRAQREAAKA 1020
>gi|403164222|ref|XP_003324286.2| hypothetical protein PGTG_05092 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375164936|gb|EFP79867.2| hypothetical protein PGTG_05092 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 1282
Score = 211 bits (537), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 211/735 (28%), Positives = 344/735 (46%), Gaps = 111/735 (15%)
Query: 304 VLFQLNSLVHNQKVSLVAADAELIQILSGL--SMETALMVLQKLHKLKSICYD------- 354
V FQL+SL++N L+ ++IQ L GL ME L + + D
Sbjct: 374 VAFQLDSLLYN----LILNPLQIIQ-LGGLVKDMEPTLAERVLIRLASDLSQDQTGQQQI 428
Query: 355 -----PVSFVKTQL----HVLGRNCKSIPLSSHKRLIDH-----NVMSCYRALVTPMKIY 400
VSF QL C S S K L D NV C +TP +
Sbjct: 429 DRQNQTVSFSDDQLVQKFQAARERCSS---KSKKNLFDRQERLDNVFKCRSVTITPTTLI 485
Query: 401 CLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYS 460
GP E SN +++ + Y S F+RV +ED S + RT +
Sbjct: 486 LEGPLPEESNSILRLY-DYNSAFIRVAIRDEDGSNYHHDREVDG----------RTFLKQ 534
Query: 461 RILTILQDGIVIGDKHYEFLAFSASQLRNNSVWM---FASNDEV-SAEDVRGWMGCFNKI 516
R L DG+ + + + FL +S+S L+ + W F V SAE +R MG F+ +
Sbjct: 535 RYRPFLVDGLYVAGRRFMFLGYSSSALKCHQAWFVCPFVHKGAVMSAEKIRSRMGTFSLV 594
Query: 517 RSV-SKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQ 575
+ ++ AR+ Q F+++++ + + + IPDV+ N F+DG+G IS S ARQ
Sbjct: 595 NRIPARYMARIAQAFTTTQKAVTLAPSQLRKIPDVQ----RNGSVFTDGVGTISPSLARQ 650
Query: 576 VAQ---------KCGLSHTPSAFQIRYGGYKGVIAVDRN-SFRKLSLRRSMLKFESRNRM 625
V Q K + S +QIR GGYKG++++D + + LR SM KF++ +
Sbjct: 651 VEQALLGTMMVLKRRNAINSSCYQIRLGGYKGMLSIDPTLAGEIVGLRPSMSKFDADSYT 710
Query: 626 LNV-TKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQK 684
L++ + + +P FLNR +I +L L + VF QQ+ + + + + + +++K
Sbjct: 711 LDIASSFRRPLPSFLNRPLIKILEDLKIPSHVFMTAQQKTVRSIERSRESFRQSAKLMEK 770
Query: 685 LN-GVDSK--NILVKM--LLQGYEPN------VEPYLSMMLLSHHENQLSDLKSRCRIYV 733
G S IL + L++ P+ ++ L + ++ L DLK R RI +
Sbjct: 771 AGLGFSSSFPKILKRFSSLMRTDNPDEVRSTFIDDCLDLAVIEC----LRDLKYRARIPL 826
Query: 734 PKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNP 793
L+G DE L GQ++ V + + K + + + GK+ ++++P
Sbjct: 827 EGSYTLVGVADEEFCLQEGQIYACV-----QEKGKPRKY----------LSGKIAISRSP 871
Query: 794 CLHPGDVRVLEAVYEMKLEEKD---YVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDN 850
+HPGDV+V+ A+ + V+C++F G+R P+ GGDLDGD++ + D
Sbjct: 872 SIHPGDVQVVHAIGRPPPGSEKLGALVNCVVFSVIGKRSLPSCLGGGDLDGDLYSLITDP 931
Query: 851 DLIPCETE--PPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDP 908
+IP + + P Y+ + ++ T+ + +FF+DY+ +D +G I+T HL AD+
Sbjct: 932 QMIPFQKDICSPGSYSPIQPILLPQPCTILDGIEFFLDYISSDLVGIIATRHLQIADQQT 991
Query: 909 DKARSSKCLHLATLHSMAVDFAKTGAPA---EMPLALKPKEFPDFM---------EREDK 956
CL LA LHS AVD+ KTG P ++P K PDFM ++ ++
Sbjct: 992 LGTLHPDCLKLAELHSKAVDYPKTGVPVSIQDLPKVESAK--PDFMCPEYMLNVHKKGNE 1049
Query: 957 PRYISFGVLGKLYRA 971
Y S VLG+L+RA
Sbjct: 1050 RYYESDKVLGRLFRA 1064
>gi|342319755|gb|EGU11702.1| RNA-directed RNA polymerase 2 [Rhodotorula glutinis ATCC 204091]
Length = 1904
Score = 211 bits (537), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 176/616 (28%), Positives = 293/616 (47%), Gaps = 64/616 (10%)
Query: 395 TPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPY 454
T + GP L +N +V+ +A+ F+ V ED S L S
Sbjct: 1112 TATRALLFGPYLGDTNSIVRAYAR-PELFVSVAVRHEDGSSLRDRDDSL----------- 1159
Query: 455 RTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWM---FASNDE--VSAEDVRGW 509
I SR + +DG +G + + FLA+S+S L+++S + F +DE ++ +
Sbjct: 1160 ---IASRFSPLFRDGFELGGRSWRFLAWSSSGLKSSSCFFMSPFRLDDETLITPTFIHRT 1216
Query: 510 MGCFNKIRSV---SKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIG 566
+G F + +K AR+ Q FSSSK +L + + I D+ DG+ CFSDG+G
Sbjct: 1217 IGDFTGSETALIPAKYMARIAQAFSSSKPSLTLRPDQMLSIEDI-TAPDGS--CFSDGVG 1273
Query: 567 KISLSFARQVAQKCGLS-----HTPSAFQIRYGGYKGVIAVDRN-SFRKLSLRRSMLKFE 620
IS S A V +K G+ P+ FQ R GG KG + VD + ++LR S +KF
Sbjct: 1274 LISPSLANDVVEKLGIKLGKEERPPTCFQFRLGGAKGTLQVDPTLEGKVVALRPSQVKFR 1333
Query: 621 SRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALD 680
S L + E+ P +LNR +I+LL LG+ +VF +Q + + K + +A+
Sbjct: 1334 STLTSLEIAGTFEAGPGYLNRPLITLLENLGIPADVFLKLQAKATAKIRKSRASLPSAVK 1393
Query: 681 VLQK---LNG---VDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVP 734
+ + +G V + N+L K P+++ L + + L D+K RI +P
Sbjct: 1394 LPRDWSLASGTRFVSALNLLAKDQATRDAAFANPFVARCLDASVVHALRDIKYLARIPLP 1453
Query: 735 KGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPC 794
L+G D G L +++ R++ R D T ++G + ++++P
Sbjct: 1454 GCYNLVGVVDVDGCLAQDEIYARIS---------------RPDGSTEYLQGTIAISRSPT 1498
Query: 795 LHPGDVRVLEAVYEMKLEEKDYV----DCIIFPQKGERPHPNECSGGDLDGDIFFI-SWD 849
HPGD R++ AV ++ + + +C++FP G R P+ +GGDLDGD++ + +
Sbjct: 1499 NHPGDCRLVRAVGKLPKGAGERIRGLTNCVVFPVHGPRSLPSMLAGGDLDGDVYLLLTEA 1558
Query: 850 NDLIPCETE--PPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRD 907
+ L+P P Y + +D +V++E+ +FF Y+ D G ++T L+ AD
Sbjct: 1559 SGLVPSPDRIAEPAAYDAAPTVKLDREVSVEDGGEFFFKYITQDRTGLVATRQLLLADSH 1618
Query: 908 PDKARSSKCLHLATLHSMAVDFAKTGAPAE---MPLALKPKEFPDFMEREDKPRYISFGV 964
+ CL LA LHS VD AK+G+ + +P + + PDF+ + Y S
Sbjct: 1619 AEGLFHPDCLKLAQLHSNCVDAAKSGSFVQQHAVPRVTQ-RGLPDFLTNDAPDSYRSSKA 1677
Query: 965 LGKLYRATLDSIMQIR 980
LG LYRA + +R
Sbjct: 1678 LGHLYRAIDEEDFAVR 1693
>gi|340960580|gb|EGS21761.1| hypothetical protein CTHT_0036280 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 1520
Score = 211 bits (537), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 148/433 (34%), Positives = 219/433 (50%), Gaps = 47/433 (10%)
Query: 523 AARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGL 582
A R+G LFS+++ V+P VE IPD+E + DG Y F+DG G IS A+ +A++ G+
Sbjct: 2 AKRIGLLFSTARVAKVIPPDRVEDIPDIE-SPDG--YVFTDGCGLISPHLAQDLARRLGI 58
Query: 583 -----SHTPSAFQIRYGGYKGVIAVDRNSFRK----LSLRRSMLKFES-RNRMLNVTKWS 632
+TPS QIRY GYKGV+ VD L +R+SM KF + +V ++S
Sbjct: 59 VFRDRRYTPSVLQIRYRGYKGVVTVDPRMTSDPRILLRMRKSMKKFSGGDDHSFSVVEYS 118
Query: 633 ESMP-CFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSK 691
+ FLN E+I LL+ LGV E+ + Q L + +A L LN D
Sbjct: 119 KPFTYGFLNDEVIVLLNALGVDREIIKKKQDNHFKFLADASRDPRSAFRFLSGLNMPD-- 176
Query: 692 NILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLK-SRCRIYVPKGRLLIGCFDETGILN 750
+ +L++ ++ + P + ++ + + L+ + +CRI +PK RLL G D G+L
Sbjct: 177 -LAESVLVESFDA-IRPRIRSLVKNEYAKMLNKREEQKCRILIPKSRLLFGVCDAWGVLK 234
Query: 751 YGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMK 810
G+ V++T+ L ++ +VLVT+NPCLHPGD++ V +
Sbjct: 235 EGECAVKITLEENGL-------------PMALKNCEVLVTRNPCLHPGDLQKFRVVERPE 281
Query: 811 LEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRI 870
L VDCI+F KG+RP + SGGDLDGD FF+ WD DLIP P Y G + I
Sbjct: 282 LSH--LVDCIVFSTKGKRPAADMMSGGDLDGDTFFVCWDLDLIPKTLSQPAKYPGVKEPI 339
Query: 871 MDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKAR-----SSKCLHLATLHSM 925
+T ++ +FFV Y N +LG + +L D AR S +C L L S
Sbjct: 340 RFTPITDDDRLEFFVRY-TNASLGRVKNLYL-------DWARAGGPMSPECQELNRLFSQ 391
Query: 926 AVDFAKTGAPAEM 938
VD + P +
Sbjct: 392 CVDGNRIKIPPRL 404
>gi|452838162|gb|EME40103.1| hypothetical protein DOTSEDRAFT_138071 [Dothistroma septosporum
NZE10]
Length = 947
Score = 211 bits (536), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 180/609 (29%), Positives = 290/609 (47%), Gaps = 77/609 (12%)
Query: 374 PLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDW 433
P KR N++ ++ ++TP Y GP+ E +N V++ + F+RV F +ED
Sbjct: 126 PYELSKRYAHINLV--HKIIITPAGTYLEGPDAEPTNRVLRRYHHSTDHFVRVIFQDEDR 183
Query: 434 SKLPANALSTSIQRGIFSKPYRTKIYS-RILTILQDGIVIGDKHYEFLAFSASQL----- 487
S + + + +++IY R +L ++I + + FL FS S L
Sbjct: 184 SPMRHDPRTD-----------QSQIYHMRFKGVLDGSVLICGRAFSFLGFSHSSLRSQSC 232
Query: 488 -------RNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVP 540
+F AE V +G F+KIR +KCAAR+GQ F+ + ++ +
Sbjct: 233 WFSAPMVSKQGSLVF-------AEQVIKELGDFSKIRVPAKCAARIGQNFTDTNASVKLR 285
Query: 541 VQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSH--TPSAFQIRYGGYKG 598
++V +P+VE N FSDG+G IS + V ++ G P+A QIR+ G KG
Sbjct: 286 PEEVFELPNVE----RNGRDFSDGVGTISERLLQSVHRRYGSKKLLKPTALQIRFQGSKG 341
Query: 599 VIAVD-RNSFRKLSLRRSMLKFESRNRMLNVTKWS--------ESMPCFLNREIISLLST 649
++A+D R ++L +R +M K+E+ W +P LNR I ++
Sbjct: 342 MVALDSRLPGKRLMIRPNMKKYET------AATWDLEICGAAFRPLPMVLNRPFIKVMED 395
Query: 650 LGVKDEVFEAMQQQQLILLGKML---INREAALDVLQKLNGVDSKNILVKMLLQGYEPNV 706
LG F +Q ++ L +M IN LD + ++ + G + +
Sbjct: 396 LGTPISTFMDLQNAAMVHLQRMTASCINTAIFLDDSEACRATRMSELIRYLGQIGLDYHH 455
Query: 707 EPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELE 766
+ ++ ++ +L D+K + RI V +G L G DETG L +++V VT E
Sbjct: 456 DHFMYSVVEMAVVAKLRDIKYKGRIPVEQGVTLYGIMDETGYLGPREIYV-VTEKAE--- 511
Query: 767 SKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEE-KDYVDCIIFPQK 825
K +V ++VT++P LHPGD++V+ AV + K + ++F +
Sbjct: 512 ----------GGKKVVVANDIIVTRSPALHPGDMQVVNAVDVPQTSPLKRLSNVVVFSKH 561
Query: 826 GERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFV 885
G+R P++ GGDLDGD++ I WD L P T P DY + +D DV +++ FFV
Sbjct: 562 GDRDLPSQLGGGDLDGDLYNIIWDPKLRPMRTFQPADYPRVSAVQLDRDVVRKDMSDFFV 621
Query: 886 DYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPA---EMPLAL 942
+M +D LG I T HL AD+ C+ LA + S AVDF+KTG P ++P
Sbjct: 622 TFMESDVLGMICTTHLQLADQRSAGVLDPDCIKLAGMASTAVDFSKTGIPVNIKDIPRYT 681
Query: 943 KPKEFPDFM 951
+ K PDFM
Sbjct: 682 RVK--PDFM 688
>gi|409044334|gb|EKM53816.1| hypothetical protein PHACADRAFT_125775, partial [Phanerochaete
carnosa HHB-10118-sp]
Length = 1091
Score = 209 bits (533), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 152/486 (31%), Positives = 241/486 (49%), Gaps = 34/486 (6%)
Query: 462 ILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSK 521
++ + G+ + Y F S SQLR+ S ++ + ++ + + +G F KI S SK
Sbjct: 85 MIRFFKAGLFLNGTQYRFYGHSNSQLRSRSCFLRQAENDEELDALIYRLGDFLKITSASK 144
Query: 522 CAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQK-- 579
A R+G LFS +K + + + I D+ V N FSDG G IS+ FA+Q+++
Sbjct: 145 RAKRIGLLFSEAKIDWNLQPRWTKDIDDIVV----NGETFSDGCGLISVKFAKQLSKHKR 200
Query: 580 ---CGLSHTPSAFQIRYGGYKGVIAVD-RNSFRKLSLRRSMLKF-ESRNRMLNVTKWSES 634
G +TP+ +QIRY GYKGV+A+D R + + R+S KF ++N +V S
Sbjct: 201 ILYHGRPYTPTVYQIRYRGYKGVLAIDPRLTTDHVHFRKSQKKFTATQNDTFSVVDHSTP 260
Query: 635 MP-CFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNI 693
LN +I+ LL++LG+ + F A Q+ L K EAA D+L N +
Sbjct: 261 FAFARLNNDIVVLLASLGISSDAFLAKQRGYHEWLQKASDGWEAAFDLLCAAN---RYAM 317
Query: 694 LVKMLLQGYEPN-VEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYG 752
++LL+G + V + + S + + + R R VPK R L G D +L G
Sbjct: 318 AERLLLEGIDSKPVRQEIRALQNSELASIRKNDRLRVRTLVPKSRFLFGVCDPYSVLREG 377
Query: 753 QVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLE 812
+V VR+ + R+ + T++ VLV +NPCL+PGD L AV+ L+
Sbjct: 378 EVHVRIMIPRKGI--------------TTLTNVDVLVVRNPCLYPGDCLKLRAVHHPALD 423
Query: 813 EKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMD 872
+DC++F +G R P+ SGGDLDGD F + WD DL+P + DY R ++
Sbjct: 424 H--LIDCLVFASRGRRAAPSMSSGGDLDGDKFTVIWDPDLVPRKVAQSYDYPAPPER-LN 480
Query: 873 HDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKT 932
+ +++ K F Y + T+G ++ H P A S++C L L+S+AVD
Sbjct: 481 AKIARQDLAKHFAAYN-SITMGRVAALHQKWIRLSPAGAMSAECQELNALYSLAVDGGSI 539
Query: 933 GAPAEM 938
P +
Sbjct: 540 KIPERL 545
>gi|225680005|gb|EEH18289.1| RNA-directed RNA polymerase Rdp1 [Paracoccidioides brasiliensis Pb03]
Length = 1258
Score = 209 bits (532), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 138/441 (31%), Positives = 228/441 (51%), Gaps = 36/441 (8%)
Query: 707 EPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRV---TMTRE 763
+P+++ +L Q+ LK + +I + KG L+GC DETG L R+ +
Sbjct: 597 DPFVTSLLELWRVWQIKYLKEKAKIAIDKGAFLLGCLDETGSLKGYFRSKRLGGGATYEQ 656
Query: 764 ELESKDQSF---FHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCI 820
+L+ + F + +++G ++ +NP LHPGD+RV++AV L D +
Sbjct: 657 KLDCLPEIFVQILRHSEGTYEVIEGLCILARNPSLHPGDIRVVKAVDIPGLHH--LKDVV 714
Query: 821 IFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCE-TEPPMDYTGRRSRIMDHDVTLEE 879
+ PQ G+R + CSGGDLDGD + + WD DL+P + E PMDY+ +S+++D DVT+++
Sbjct: 715 VLPQTGDRDIASMCSGGDLDGDDYVVIWDQDLLPKDWFEEPMDYSAPKSKVLDRDVTVDD 774
Query: 880 IHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMP 939
I KFFV YM ND L I+ AHL AD D + KCL LATLHS AVD+ K+G P M
Sbjct: 775 IIKFFVSYMQNDRLPQIALAHLAIADYSDDGVQDEKCLRLATLHSAAVDYNKSGIPVRMN 834
Query: 940 LALKPKEFPDFMER---EDKPRYISFGVLGKLYRATLDSIMQIRSNAI-----WSEKIAE 991
L+PK++P FMER + +Y S +LG+LY + ++S++ + ++I
Sbjct: 835 QDLRPKKWPHFMERKFAKKDSQYTSRKILGQLYDIAGGVYLNLQSHSAKGRLPFDQRILN 894
Query: 992 ASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILT------GNLRNRA 1045
A+++ D E L A+ K Y+ ++ +M + +E+E+ + N+
Sbjct: 895 ANFEID------EKLLSFAKELKGEYDADLRRIMAQHEIQSEEEVWSTFVLSHANMSKDY 948
Query: 1046 SYLQRDNRRYGDMKDRILL------SAKNLQNEAKEWFGSSCKENEHPQLASAWYHVTYS 1099
+ + R ++ + + K+ ++ A +E + A A H +
Sbjct: 949 KFHEEIGRISSALRQKFRMLCHEKAGGKDFKSLAPLAIAMYRVTSEQMEKAKATAHSHCT 1008
Query: 1100 PSYCKERMALLSFPWIVGDIL 1120
P +E M L+SFPW++ IL
Sbjct: 1009 PGE-EEMMPLISFPWVLQPIL 1028
Score = 145 bits (365), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 86/234 (36%), Positives = 132/234 (56%), Gaps = 18/234 (7%)
Query: 381 LIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEE-DWSKLPAN 439
LI+ + A VTP IY P ++T N V + + +YA F+RV F +E + K+
Sbjct: 375 LIEQIIPGHQSAEVTPSTIYYKPPSIDTGNRVFRRYREYADRFLRVRFTDEKNMGKIFPY 434
Query: 440 ALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASND 499
+ + + ++Y+R+ +++GI IGD+ YEFLAFS +QLR ++ + FAS
Sbjct: 435 SNANIV--------CMNEVYTRVTLTMKNGITIGDRCYEFLAFSNAQLREHAAYFFASLP 486
Query: 500 EVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTY 559
++A ++R +G FN IR+V+K AAR+GQ FSS++ PVQ VE I D+E N Y
Sbjct: 487 HLTAANIRAQLGKFNPIRNVAKHAARVGQCFSSTRALTGCPVQIVE-IDDIER----NGY 541
Query: 560 CFSDGIGKISLSFARQVAQKCGL----SHTPSAFQIRYGGYKGVIAVDRNSFRK 609
FSDG+G IS A+ + + + PS FQ R GG KG++ V + R+
Sbjct: 542 TFSDGVGLISKFLAQMIQSEFAIETLSGEPPSVFQFRLGGCKGILTVSSKAHRR 595
>gi|409046078|gb|EKM55558.1| hypothetical protein PHACADRAFT_173705 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1167
Score = 208 bits (530), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 186/698 (26%), Positives = 327/698 (46%), Gaps = 100/698 (14%)
Query: 383 DHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALS 442
D CY +TP + GP E +N V++ +A + S+F+RV F +E+
Sbjct: 372 DAETFPCYHVTITPSRFILSGPFPERNNRVMRKYASHTSNFLRVDFADEE-------GFQ 424
Query: 443 TSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFA----SN 498
+ R + S+ + + + R L+ G V+ D+H++FL +S S L+ ++VW S+
Sbjct: 425 YRMDRVLDSRRFVRERFGRFLS---QGFVLVDRHFDFLQWSQSGLKQHAVWFVKEFQMSH 481
Query: 499 DEVSAEDVRGWMGCFNKIRSVSK---CAARMGQ----LFSSSKQTLVVPVQDVEMIPDVE 551
D V+ + + +G F+ + C AR+G F+++ + V +++ + PD+E
Sbjct: 482 DTVTVDSIIADLGTFHDTPYDPRLMYCPARLGARRALAFTTTDAAVEVEAEEIVVEPDIE 541
Query: 552 VTSDGN-TYCFSDGIGKISLSFA-------RQVAQKCGLSHT-PSAFQIRYGGYKGVIAV 602
D N F+DG G IS R+ +++ +H P Q R+ G KG V
Sbjct: 542 ---DANGKRSFTDGAGLISEELMTAVWEELRKKSRRYRRAHMMPDVIQHRFQGSKGTSTV 598
Query: 603 DRN-SFRKLSLRRSMLKFESR-NRMLNVTK-WSESMPCFLNREIISLLSTLGVKD--EVF 657
R R L +R SM+KFE+ +RM+ V ++ + P LNR +I LL L ++ E+
Sbjct: 599 SRRLPGRVLVIRPSMIKFEATGSRMVEVAAAFTRAGPFRLNRPLIMLLEGLRIRGGYEIL 658
Query: 658 EAMQQQQLILLGKMLINREAALDVLQKLNGVDS----KNILVKMLLQGYEPNVEPYLSMM 713
+ +Q +I K N + L + +G+ + ++ + + +P+ +
Sbjct: 659 KKLQDA-VIQETKDAANSLSTAARLLEPHGLGTGFKVSSVFANLARLELDSMPDPFFHRV 717
Query: 714 LLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFF 773
L + L DLK RI VP G L+G D G L G+VF VT +
Sbjct: 718 LNVAIYHILRDLKYHARIPVPGGYTLVGVADPYGYLGEGEVFACVTTS------------ 765
Query: 774 HRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYE----MKLEEKDYVDCIIFPQKGERP 829
+ + ++G+++++++P +HPGDV+++ A+ + ++ ++ ++F G+RP
Sbjct: 766 --TNAEPIFLEGEMMISRSPTVHPGDVQIVRAIGRPPKGSEFDKHPIMNALVFATIGKRP 823
Query: 830 HPNECSG-GDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYM 888
P C G GDLDGD++ + +L+P +T P Y + + H T +++ F +++
Sbjct: 824 -PASCLGNGDLDGDVYVCTTKEELLPKQTRAPASYDAAARKEVPHQSTQQDMADFVTEFI 882
Query: 889 INDTLGAISTAHLVHADR----DPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKP 944
+D +G I++ L AD+ DP CL LA LHS+A D+ KTG P +PL P
Sbjct: 883 CSDNIGIIASRWLELADKRGIFDPG------CLRLAYLHSLATDYPKTGLP--VPLEYLP 934
Query: 945 -----KEFPDFM--EREDKPR-YISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDH 996
+ PD+ E E R Y S LG+L+R ++R + + +Y+
Sbjct: 935 GTDMRRGRPDWSAPETEGSRRFYQSTRYLGRLFR-------EVRLPVPPHPQQPKQTYEE 987
Query: 997 DLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTED 1034
LE+ AF + ++ A MN A D
Sbjct: 988 RLELGKVTAF----------FRDDSRASMNAIDAKVHD 1015
>gi|45861741|gb|AAS78669.1| RdRp1m truncated protein [Nicotiana benthamiana]
Length = 479
Score = 208 bits (529), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 164/510 (32%), Positives = 260/510 (50%), Gaps = 52/510 (10%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKA 64
T+ V P A+ + FLE+ G +V+ALE+ +S R RVQF S +K+
Sbjct: 4 TIQVFGFPYLLSAEAVKTFLENHTGNGTVYALEV--KQSKGGRRSFARVQFAS----NKS 57
Query: 65 QNLSLNDK---LVFNSQNLKISETHSDIVPRPVKAQHRVEDGV-LHVGVMCKEERLRVLQ 120
L ++ L + LK E ++DIV QH DGV L+ G +++ VL
Sbjct: 58 AELIIDLASMGLYYGPSYLKAWEMNTDIVQPRTYVQHM--DGVTLNFGCQISDKKFAVLG 115
Query: 121 TFEGVRGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFS 180
+ + V +++ F++ SSD +K+++ +E++ + V
Sbjct: 116 S-KDVSIKFGIGLKKIYFFL---------------SYGSSD--YKLQLSYENIWQVV-LH 156
Query: 181 LDEGATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKS 240
G +L +L P+IY+++ Y KE D WVRTTDF+ +
Sbjct: 157 RPYGQKAQFLLLQLFGAPRIYKRLE---------ESCYSFFKETPDDQWVRTTDFTPS-W 206
Query: 241 IGCSTSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTTSEI--VPLVKCRPGF 298
IG S+S E NG+ + F +YKE +IL G F + ++ VP+V G
Sbjct: 207 IGLSSSLCLEFHNGIRLPNFRESFFYYKESGNQVILRTGFTFSFSQKLALVPIVHLPNGV 266
Query: 299 NLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALM--VLQKLHKLKSICYDPV 356
+L +++LF+++SL+ + VA + Q++ A + L+KL+ LK CYDPV
Sbjct: 267 DLPYKILFKISSLIQHGCFPGVALNFNFFQLVDPRRRNIACIEHALEKLYYLKECCYDPV 326
Query: 357 SFVKTQL-HVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKN 415
++ Q L R + +P S L D ++ R +VTP K+Y GPE+ SN V++N
Sbjct: 327 RWLTEQYDEYLKR--RQLPKSPSITL-DDGLVYVRRVVVTPCKVYFSGPEVNVSNRVLRN 383
Query: 416 FAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDK 475
+++ +F+RV+FV+E+W K+ + L + R RT IY RIL+ L++G VIGDK
Sbjct: 384 YSEDIDNFLRVSFVDEEWEKIHSTDL---LPRASTGNGMRTDIYLRILSTLRNGFVIGDK 440
Query: 476 HYEFLAFSASQLRNNSVWMFASNDEVSAED 505
+EFLAFS+SQLR+NSVWMFAS ++A D
Sbjct: 441 KFEFLAFSSSQLRDNSVWMFASRPGLTAND 470
>gi|395332591|gb|EJF64970.1| RdRP-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 1236
Score = 208 bits (529), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 182/643 (28%), Positives = 299/643 (46%), Gaps = 85/643 (13%)
Query: 387 MSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQ 446
+ C A++TP ++ GP SN V++ + Y F+RV F EE+
Sbjct: 419 VQCAHAIITPTRVLLEGPYDTQSNRVIRKYYAYRDYFLRVEFREEN-------------- 464
Query: 447 RGIFSKPY----RTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFA-----S 497
R F P R+ I R L+ G+ I + + FL +S S LR ++VW A
Sbjct: 465 RMSFRWPIEVNGRSLIQQRFGKFLKQGLEIAGRTFRFLGYSTSGLREHTVWFMADFNHPE 524
Query: 498 NDEVSAEDVRGWMGCFN---KIRSVSKCAARMGQLFSSSKQTLVVPV-QDVEMIPDVEVT 553
V+ E +R +G F IR SK AAR+ Q FS + + + + Q E +PD+
Sbjct: 525 EGPVTPEKIRNDLGDFTFKKSIRQPSKYAARIAQAFSGTDPSYKITIGQWEEGVPDLGT- 583
Query: 554 SDGNTYCFSDGIGKISLSFARQV--------AQKCGLSHTPSAFQIRYGGYKGVIAVDRN 605
+ Y F+DG G IS+ ++ K L PSAFQIR+ G KG++ VD
Sbjct: 584 ---DPYEFTDGQGTISVELRDRIWDVLCEASPDKRKLILKPSAFQIRFLGCKGIVVVDEQ 640
Query: 606 -SFRKLSLRRSMLKFE---SRNRMLNVTK-WSESMPCFLNREIISLLSTLGVKDEVFEAM 660
KL LR SM KF R + + K + + P L R +I++L G+ + A+
Sbjct: 641 LEGIKLRLRDSMKKFHVEHMREAEIEIAKAFIKPGPARLCRPLIAVLEDRGIHKQHLLAL 700
Query: 661 QQQ--QLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQG------YEPNVE----- 707
Q++ + ++ + I + A L L V +++ L + +P
Sbjct: 701 QEKAKKKVVEARDTIEQTAGLLRDHDLGNVYGLRYILEHLRKAGVDTGKKKPRARHIMDN 760
Query: 708 PYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELES 767
+++ ++ + LS++K RI + + L+GC DE G ++ E++
Sbjct: 761 EFIARLIDYAQTHILSEIKHDARIPIEEAHQLVGCADE------GPAYIAAGHDPEKVIC 814
Query: 768 -KDQSFFHRVD----DKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYV----- 817
K+ F V D+ ++G V ++++P +HPGDV+ + A+ + ++ D V
Sbjct: 815 LKEGEIFACVQQPDSDEPIYIQGLVSISRSPHIHPGDVQRVRAIGKPP-DDPDKVCFFRN 873
Query: 818 --DCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDV 875
+ ++ P G+R + +GGD+DGD F + D L+P P Y G + +D D
Sbjct: 874 LRNVVVMPSVGDRSLASMLAGGDVDGDEFLVIKDMTLLPTTLVEPASYVGVKPEPLDRDS 933
Query: 876 TLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAP 935
T+++I FF++YM +D +G ++ HLV AD+ C+ LA L S AVD+ K G P
Sbjct: 934 TVDDICDFFMEYMQSDVVGLVADLHLVIADQSKYGTFDEDCMRLAQLCSQAVDYPKNGVP 993
Query: 936 A---EMPLALKPKEFPDFMERED---KPR--YISFGVLGKLYR 970
MP L + PD+ + ED +P Y S LG+L+R
Sbjct: 994 VNVENMPRKLI-RAKPDWKKPEDTDYRPADYYESTRALGELFR 1035
>gi|330798142|ref|XP_003287114.1| hypothetical protein DICPUDRAFT_54684 [Dictyostelium purpureum]
gi|325082892|gb|EGC36360.1| hypothetical protein DICPUDRAFT_54684 [Dictyostelium purpureum]
Length = 2341
Score = 208 bits (529), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 207/750 (27%), Positives = 340/750 (45%), Gaps = 86/750 (11%)
Query: 392 ALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFS 451
VTP +I P+LE +N ++ F + +F+ + E L RG+
Sbjct: 1185 VFVTPSRIIFKEPKLERTNRALRRFG--SENFILLKVANESLEPL----------RGLNP 1232
Query: 452 KPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMG 511
K +Y+ I GI + Y ++ S SQ + S W ND +R W
Sbjct: 1233 K---HPLYTTIQKYFDSGIELSGTKYYYVGNSNSQHSDFSAWFV--NDLAHVFLIRNWSQ 1287
Query: 512 CFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLS 571
+ + K A + +F+++ + V+P ++ +I D+ S+G+ F++G G I
Sbjct: 1288 DQSLVMQPRKFARGLSLMFTTTSPSFVIPQRNYYIIDDI--ISNGHN--FTEGCGFIGKD 1343
Query: 572 FARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRN-SFRKLSLRRSMLKFE----SRNRML 626
+R++ + + A+QIR GG KG++ V + +R+S +K + +R L
Sbjct: 1344 LSRRINELFHYKSSTCAYQIRIGGAKGMLVVSETVDPDGVYIRKSQIKTKPAHYDEHRTL 1403
Query: 627 NVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLN 686
+ S S C LNR++I+LLS GVKD VF ++Q + + L L + E + VL +
Sbjct: 1404 EICSISTSSNCKLNRQVIALLSCKGVKDHVFYSIQDRYMNYLASTLNDVEYSRKVLDEF- 1462
Query: 687 GVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDET 746
K++ LLQ + ++ +L++H++ + + + + + K R L+G D T
Sbjct: 1463 ---FKDLNDNELLQ------DNFIRRILITHYKLSIERAQQKSHLDIEKSRNLLGVTDPT 1513
Query: 747 GILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAV 806
+L +F+++ E E +D S H V +KG V+VTKNPC HPGD+R+L AV
Sbjct: 1514 RLLPADCIFIQI-----EQEEEDGSR-HYVP-----LKGDVVVTKNPCTHPGDLRILRAV 1562
Query: 807 YEMKLEEKDYV-DCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTG 865
+E ++ D I+F G P+ E SG DLDGD +F+ +DNDL+ P Y G
Sbjct: 1563 ---NIEALHHLKDVIVFSTYGNVPNFKEISGSDLDGDRYFVCFDNDLMINGNSIP--YLG 1617
Query: 866 RRSRIMDHDVTLEEIHKFFV-DYMIN---DTLGAISTAHLVHADRDPDKARSSKCLHLAT 921
D + K V Y+ N +G + AHL A D A S + L+
Sbjct: 1618 DNLTKEDPPQNVYNDPKLLVGQYLANVEKQKIGTLYNAHL--AISDYYGADSVHAIELSI 1675
Query: 922 LHSMAVDFAKTGAPAEMP----LALKPKEFPDFMERED---KPRYISFGVLGKLYRATLD 974
+D KTG E+P L +P +M R+D K Y S V G ++ D
Sbjct: 1676 ECFKEIDAVKTGVHGEVPRNIQFHLNHFGYPHYMRRDDNSPKKYYQSKKVQGLMF----D 1731
Query: 975 SIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTED 1034
+ Q+ + + E S + DG+ +L A + Y+ ++N+L+ YG E+
Sbjct: 1732 QLEQL---VYIGDFLPEISVNEKNLKDGYNDYLNSASILYQEYKNKINSLLQRYGGEDEE 1788
Query: 1035 EILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSCKE-----NEH--- 1086
+L G + S N + D+K+ + + E + FGS + NEH
Sbjct: 1789 SLLVGFMDQNFSSDYSKNIQ-DDIKENYRAIIDSFKVEFLKDFGSGIIDEQVIKNEHYGE 1847
Query: 1087 -PQLASAWYHVTYSPSYCKERMALLSFPWI 1115
+ SAWY+V+YS K L F WI
Sbjct: 1848 VEKKISAWYYVSYSD---KNEDRALGFYWI 1874
>gi|393235346|gb|EJD42902.1| RNA-directed RNA polymerase [Auricularia delicata TFB-10046 SS5]
Length = 1654
Score = 207 bits (528), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 166/517 (32%), Positives = 255/517 (49%), Gaps = 45/517 (8%)
Query: 437 PANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWM-- 494
P+ +S S + F P T + I L G+ + D+ Y F S SQLR ++
Sbjct: 58 PSKFISVSFRE--FRMPEYTTV-DYIKRFLAAGLFLDDRQYRFYHHSPSQLRERGCFLRE 114
Query: 495 FASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTS 554
AS++E+ A G F++I +V+K A R+G LFS + + Q E I D+ V
Sbjct: 115 AASDEELDARIYS--YGDFSRINNVAKRAKRIGLLFSGASIDYNLDPQFTEDIDDIIV-- 170
Query: 555 DGNTYCFSDGIGKISLSFARQVAQKC-----GLSHTPSAFQIRYGGYKGVIAV----DRN 605
GN FSDG G +S A ++++ G +TPS FQIRY GYKGV+ + DR+
Sbjct: 171 -GNEL-FSDGCGLVSRRLAVALSRQKKIVFRGARYTPSVFQIRYRGYKGVLMLHPELDRS 228
Query: 606 SFRKLSLRRSMLKFESR-NRMLNVTKWSESMP-CFLNREIISLLSTLGVKDEVFEAMQQQ 663
RRSM KF + + V +S LN ++I L+S+LG+ +E A Q +
Sbjct: 229 HGPLAQFRRSMKKFNATLDDTFTVVGYSTPYAFGRLNNDVIVLISSLGITNETLLAKQAE 288
Query: 664 QLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPN-VEPYLSMMLLSHHENQL 722
L + + + A+D+L L + ++LL G + + V+ L+ ++ ++
Sbjct: 289 YFDWLLRAVSDVSCAVDLLSCLGDF---AMAERVLLDGLDADHVQKALAGIVSREVKSFR 345
Query: 723 SD-LKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTS 781
D + R R+ + K RLL G D G+L G+V VRV+ R+ T+
Sbjct: 346 KDNGRLRSRMIIRKSRLLFGVCDPFGVLREGEVHVRVSAGRQP--------------ATT 391
Query: 782 IVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDG 841
+ VLV KNPCLHPGDV L AV +L VDC++FP G+R + SG DLDG
Sbjct: 392 LTHCDVLVVKNPCLHPGDVLKLHAVENPRLAH--LVDCVVFPSVGKRAPASMTSGSDLDG 449
Query: 842 DIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHL 901
D FF+ WD+D+IP +T P Y + +I ++ +++ F Y ++ ++ H
Sbjct: 450 DQFFVCWDSDIIPSKTTDPYLYPKGKEQI-SRSISRQDLAAHFAAYS-GASIAKVAGLHS 507
Query: 902 VHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEM 938
A A ++CL L+ LHS+AVD K P +
Sbjct: 508 KWARHSQQGAMCTECLELSALHSLAVDGGKIKVPKRL 544
>gi|341877528|gb|EGT33463.1| hypothetical protein CAEBREN_18731 [Caenorhabditis brenneri]
Length = 1708
Score = 206 bits (525), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 198/754 (26%), Positives = 331/754 (43%), Gaps = 127/754 (16%)
Query: 393 LVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSK 452
L T KIY L PE+ SN V + +R T ++++ K+ L +
Sbjct: 453 LTTTRKIY-LAPEMIMSNRAVTGVDHDGTRIIRTTIRDDNFQKMRQYQLGDLLS------ 505
Query: 453 PYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAE-------- 504
+++ L+ G VI + + +LA S SQ+R + ++ +
Sbjct: 506 -------EKVMRRLKKGFVIMGRSFSYLASSNSQMREGGTYHMERFNKKQLDLDYPGIHL 558
Query: 505 ------------DVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPV--QDVEMIPDV 550
R +G F K S+SK AR+GQ F+ ++ + + + QD +M+PD
Sbjct: 559 RKIPSGYKPKILAYRKKLGKFEKTGSISKAMARLGQCFTQARACIGIEIGNQDYQMVPDA 618
Query: 551 --EVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSH--TPSAFQIRYGGYKGVIAVD--- 603
++G Y ++DG+G IS A+++A+ L + PSA+QIR+ G KG++ VD
Sbjct: 619 IGGKNANGAPYMYTDGVGMISARLAQKIAKSMKLPNGFVPSAYQIRFRGLKGMLVVDPSL 678
Query: 604 ------------RNSFRKLS---------------LRRSMLKFESRNR-----MLNVTKW 631
R RK + R S +KF S + + KW
Sbjct: 679 DNKADYFKDIYRRGLMRKETNSEEIDLAPYTFKCLFRESQMKFHSSKGGKDKWPIELVKW 738
Query: 632 SESMPCFLNREIISLLSTLGVKDEV---------FEAMQQQQLILLGKMLINREAALDVL 682
S P LNR I++L + + E + ++ +IN +
Sbjct: 739 SSPTPVTLNRPFINILDQVSALQSLDCHKRICGRIEELLDIEMDSFTDCIINEDKCR--- 795
Query: 683 QKLNGVDSKNILVKMLLQ-GYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPK--GRLL 739
KL G+ + + + G+ EP+ ++ + + + L + I +P GR +
Sbjct: 796 SKLEGMPRRVHFPSLWRRNGFSLCTEPFFRALIKAAIDFSMMRLLKKVNIPIPSNVGRSM 855
Query: 740 IGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGD 799
G DETG+L YGQVFV+ T E + +K H I+KG ++VTK P + GD
Sbjct: 856 FGVTDETGLLQYGQVFVQYT---ENVNNK-----HPSGVSGKILKGPLMVTKFPSMCEGD 907
Query: 800 VRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEP 859
VR+ EAV +L + V I+FPQ G R P+E +G DLDGD + + WD L E
Sbjct: 908 VRMYEAVDIPELRHLENV--IVFPQNGPRSMPDEMAGSDLDGDEYAVIWDPFLFFERNET 965
Query: 860 PMDYTGRR-SRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLH 918
Y + + ++ D E ++ F+ ++M + +G +T HL +D+ S C
Sbjct: 966 AFAYCNDKPEKKLNIDEMDEGMNVFYAEFMNQEDVGITATNHLHQSDQ--YGINSKVCNI 1023
Query: 919 LATLHSMAVDFAKTGAPAEMPLALKPKEFPDFM------EREDKP-----------RYIS 961
LA ++M +D++K+G A PL + P+ + E KP Y S
Sbjct: 1024 LAEKNAMLLDYSKSGV-APSPLTFNWDKHPETKKWVPPEKSERKPDFANNRFSMNQTYQS 1082
Query: 962 FGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEM 1021
+LG L+R L S+ + + + +EK D L G+E + VAE+ Y +
Sbjct: 1083 SRLLGTLHRE-LRSVNDVVATS--AEKQVPLVLDDLLVWTGWEQYKSVAEAQLLRYNGSL 1139
Query: 1022 NALMNYYGASTEDEILTG---NLRNRASYLQRDN 1052
++M +G +TE E+ +G +RNR S ++D+
Sbjct: 1140 RSIMETFGVNTEAEVFSGYYREIRNRQSDKEQDD 1173
>gi|392597024|gb|EIW86346.1| RdRP-domain-containing protein [Coniophora puteana RWD-64-598 SS2]
Length = 1218
Score = 206 bits (525), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 190/643 (29%), Positives = 297/643 (46%), Gaps = 82/643 (12%)
Query: 372 SIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEE 431
+ P L N Y + TP GP + SN V++ F + F+RV+F +E
Sbjct: 410 ATPFGPLSALPPVNSYDAYHLIFTPTTQILEGPLPDQSNSVLRRFGHHEC-FLRVSFQDE 468
Query: 432 DWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNS 491
+ + L R F + SR G + + +EFL +S S LR +S
Sbjct: 469 NCAPL----------RRDFEWSISELMKSRFRPKFLKGHRVAGRKFEFLGYSMSGLREHS 518
Query: 492 VWMFA--SNDE---VSAEDVRGWMGCFNKI-RSVSKCAARMGQLFSSSKQTLVVPVQDVE 545
VW A ND ++A +R +G F+++ + ++ AR Q FS++ ++V+ +++
Sbjct: 519 VWFVAPFQNDRGEWLNAAAIRNLLGDFSELLKRPARLGARWSQAFSTTDPSVVLRQEEIF 578
Query: 546 MIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQK--------CGLSHTPSAFQIRYGGYK 597
+ D+ S + +DG IS AR + +K L + PSAFQ R GG K
Sbjct: 579 RVDDI--ISPRSKKVMTDGCSSISPDLARNIWEKLRTDRRQLSSLKNPPSAFQFRLGGAK 636
Query: 598 GVIAVDRN-SFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEV 656
GV+ + + + + LR S LKFE +V S S P +LNR +I+LL + V
Sbjct: 637 GVVVQNPDLEGKVVCLRPSQLKFEGSELTFDVQSHSRSRPMYLNRPLIALLEHVAASGLV 696
Query: 657 FEAMQ-QQQLILLGKMLINREAALDVLQKLNGVDSK--------NILVKMLLQGYEPNVE 707
++ Q I+ + + + + +++G+ + N+ ++ L +
Sbjct: 697 TRVLKLQHDDIMEAQGVRSSFKDASKMLEVHGLGAPFRLGSLFHNLSSELNLHVWTSETP 756
Query: 708 PYL-------SMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTM 760
L +M +S H L +LK R I VP L+G DE LN G++F V
Sbjct: 757 RGLRNEIIIDAMRCISTH--ALRELKYRAHIRVPGSYTLMGVSDEWDCLNPGEIFATVRD 814
Query: 761 TREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCI 820
R +H ++G V VT++P +HPGD++V++AV +LE + I
Sbjct: 815 YR-------TGVYH-------AIEGPVAVTRSPQIHPGDIQVVKAVRRPELEH--LTNVI 858
Query: 821 IFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEI 880
+F +G+RP PN GGDLDGD F + D +L P P Y + H +E++
Sbjct: 859 VFSTRGDRPLPNYLGGGDLDGDDFNLILDENLFPTYNRIPGSYVSLPIKETPHICGVEDV 918
Query: 881 HKFFVDYMINDTLGAISTAHLVHAD-RDPDKARSSKCLHLATLHSMAVDFAKTGAPAE-- 937
F DY +D +G IS AHL AD DPD S +C+ LA L S AVDF KTG P +
Sbjct: 919 VDFIFDYFESDLVGLISIAHLRFADLGDPD---SQECMTLAELASQAVDFPKTGTPVQFE 975
Query: 938 ----MPLALKPKEFPDFMERE-DKPR-----YISFGVLGKLYR 970
P +K PDF+ +E + P Y S +LG+L+R
Sbjct: 976 DLPRFPDTIK----PDFLAKEGEDPHQNSRFYKSPKLLGRLFR 1014
>gi|392597023|gb|EIW86345.1| RdRP-domain-containing protein [Coniophora puteana RWD-64-598 SS2]
Length = 1223
Score = 206 bits (523), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 194/651 (29%), Positives = 312/651 (47%), Gaps = 85/651 (13%)
Query: 389 CYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRG 448
Y + TP GP + SN V++ F + F+RV+F +E+ + L R
Sbjct: 435 AYHLIFTPSTYILDGPLPDQSNSVLRRFGNHEC-FLRVSFQDENRAPL----------RR 483
Query: 449 IFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWM---FASNDEVS--A 503
F + R I G + +HYEFL +S S LR +SVW F S+ ++ A
Sbjct: 484 DFEYSISELMQKRFRPIFLGGHKVAGRHYEFLGYSMSGLREHSVWFVTPFTSDKGITMDA 543
Query: 504 EDVRGWMGCFNKIR-SVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFS 562
E +RG +G F++++ ++ AR Q FS++ ++ + ++++ + D+ ++ GN C +
Sbjct: 544 ETIRGQLGDFSELQYKPARLGARWSQAFSTTDPSVTLERREIQYVNDI-TSASGN--CMT 600
Query: 563 DGIGKISLSFARQV--------AQKCGLSHTPSAFQIRYGGYKGVIAVDRN-SFRKLSLR 613
DG IS+ AR++ + L PSAFQ R GG KGV+ + + + R + LR
Sbjct: 601 DGCSSISIELAREIWTSLNRTRRRTFPLKFPPSAFQFRLGGAKGVVVQNPDLNDRVVCLR 660
Query: 614 RSMLKFESRNRM-LNV-TKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLIL---- 667
+S KFE+ N + +V + + P FLNR +I++L LG +D + ++ Q +
Sbjct: 661 KSQRKFEAPNVLTFDVQSHTARPRPMFLNRPLIAILEHLGEQDTMDRILELQHADIQEAQ 720
Query: 668 --------LGKML-INREAALDVLQKLNGVDSKNILVKMLLQ----GYEPNVEPYLSMML 714
KML ++ A L L G +K + +++ + G++ V ++
Sbjct: 721 GVRSSFRDAAKMLQVHGLGASFHLTSLFGNLAKELNMRVWTRESDDGWQNEVV-IDALRC 779
Query: 715 LSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFH 774
+S H L +LK R I VP L+G DE L G++F V R L+
Sbjct: 780 ISTH--ALRELKYRAHIRVPGSYTLMGVSDEWNCLRPGEIFATVRDIRNGLDKP------ 831
Query: 775 RVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNEC 834
+ G+V VT++P +HPGD++V+ AV +LE + ++F +G+R P+
Sbjct: 832 --------IVGRVAVTRSPQIHPGDIQVVTAVRRPELEH--LTNVVVFSTQGDRALPSFL 881
Query: 835 SGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLG 894
GGDLDGD F + D L P P Y + H +E++ F +Y D +G
Sbjct: 882 GGGDLDGDDFNLILDEALFPTANSEPGSYVSLPIKETTHPCGIEDVVDFVFNYFETDLVG 941
Query: 895 AISTAHLVHAD-RDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPL--ALKPKEF-PDF 950
I+ HL AD DP A C+ LA L + AVDF KTG P + L L KE PDF
Sbjct: 942 RIAIMHLRFADLEDPGCA---SCMTLAELAAQAVDFPKTGTPVDFKLLPRLPDKEIKPDF 998
Query: 951 MERE-DKPR-----YISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYD 995
+ RE + P Y S +LG+L+R +Q S W+++ E+ +D
Sbjct: 999 LAREGENPHKNERFYESQKLLGELFRRV---PLQDWSPGFWNKE--ESPFD 1044
>gi|66813222|ref|XP_640790.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
gi|60468778|gb|EAL66778.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
Length = 2285
Score = 206 bits (523), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 191/706 (27%), Positives = 316/706 (44%), Gaps = 111/706 (15%)
Query: 393 LVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSK 452
VTP +I P L N +++ F+ F+ F +E+ RG+
Sbjct: 1078 FVTPSRIVLKPPRLTLGNRILRKFS--PEKFILFNFTDENLEPF----------RGLNKS 1125
Query: 453 PYRTKIYSRILTILQDGIVI---GDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGW 509
TK RI +GI I K Y F+ S SQ+RN S W + + + W
Sbjct: 1126 SPLTKTIERIFN---NGIEIIQGSGKKYFFIGCSQSQVRNYSAWFVLEDKVTNEKSALNW 1182
Query: 510 MGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKIS 569
G + + K + LFS++ ++ V+ +EMIPD+ ++ +G+ F++G G I
Sbjct: 1183 SGIKYESLQMIKVFRNLCLLFSTTLKSQVI--YKIEMIPDI-ISKEGHN--FTEGCGFIG 1237
Query: 570 LSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRN-SFRKLSLRRSMLKFE-------- 620
+ Q+ + + A+QIR GG KGV+ ++ N L +R SM KFE
Sbjct: 1238 SKLVELINQQNNYNSSTCAYQIRLGGSKGVLVLNENIDEMSLQIRPSMSKFELDYKSGQL 1297
Query: 621 -SRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAAL 679
++ L + S + C LNR+ I+LLS GV+D F M + +L + L++ +
Sbjct: 1298 DEEHKTLEIVSASTTSRCKLNRQAITLLSNAGVEDSTFLQMLEVELNQNAQTLVD----V 1353
Query: 680 DVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLL 739
++ ++L G ++I L Y Y+ +LL ++++L ++ +C I V + R L
Sbjct: 1354 NLSKELLGDFFQHITEYELFNDY------YIRSILLKLYKSKLIKIQDKCWIEVKESRNL 1407
Query: 740 IGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGD 799
+G D +G L V++ V EEL+ D K ++ G+V V KNPC HPGD
Sbjct: 1408 LGVCDTSGTLPEDTVYIEV----EELDPIDNLM------KPKVIIGRVAVLKNPCHHPGD 1457
Query: 800 VRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEP 859
VR L+A+ L K V + F G P+ +CSG DLDGD +F+ +D LI +
Sbjct: 1458 VRFLKAIDHPPLNGKRNV--LFFSTNGMVPNFKQCSGSDLDGDRYFVIYDQTLIREDLIT 1515
Query: 860 PMDYTGRRSRIM----------------DHD-------------VTLEEIHKFFVDYMIN 890
Y G + D+D T ++ ++ +
Sbjct: 1516 HEPYLGEEQTVNPLIGEEDSDDDQYENDDNDITIPTSTTTKSTNNTPTKLSDIYLKNVDK 1575
Query: 891 DTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGA----PAEMPLALKPKE 946
LG IS HL A D +K S + +A ++ VD KT P ++ LK K
Sbjct: 1576 SKLGTISNTHL--AISDIEKVSSINSIKVAIQCAIEVDSVKTSVHGIIPRDVKSILKEKG 1633
Query: 947 FPDFMERED-----------KPRYISFGVLGKLYRATLDSIMQIRSNAIW-SEKIAEASY 994
+P FM+ ++ + YIS V+GK+Y + N +W + + EA
Sbjct: 1634 YPHFMKIKNGSTFEYKGGNQRKYYISDRVIGKIYDSA--------ENLLWFGDFLPEAKV 1685
Query: 995 DHDLEVDGFEAFLGVAESHKEM-YEEEMNALMNYYGASTEDEILTG 1039
D L V G++ +L M Y+ ++N+++ +GA +E+++L G
Sbjct: 1686 DESLLVQGYKEYLNHENFTTYMDYKSKINSILRRFGAQSEEDLLIG 1731
>gi|302682738|ref|XP_003031050.1| hypothetical protein SCHCODRAFT_235575 [Schizophyllum commune H4-8]
gi|300104742|gb|EFI96147.1| hypothetical protein SCHCODRAFT_235575 [Schizophyllum commune H4-8]
Length = 1178
Score = 204 bits (520), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 180/651 (27%), Positives = 305/651 (46%), Gaps = 98/651 (15%)
Query: 383 DHNVMSCYRALVTPMKIYCLGPELETSNYVVKNF-AKYASDFMRVTFVEEDWSKLPANAL 441
D ++ +VTP ++ GP E SN +++++ AK+ F+RV+F +ED L
Sbjct: 382 DASIFQSLHLIVTPTRMIFQGPFPERSNRIIRSYDAKHHDSFLRVSFTDED-------KL 434
Query: 442 STSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWM----FAS 497
R + + + SRI L++GI + ++FLA+S S L+ ++V+ +
Sbjct: 435 HYRFDRDVDGS---SMVRSRIERFLKNGICLAGHKFDFLAYSQSALKEHTVYFVKPFWVG 491
Query: 498 NDEVSAEDVRGWMGCFNKIRS---VSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTS 554
EV+A + +G F ++ AAR+ Q F+++ +++V ++V + D+ T
Sbjct: 492 IREVNAATIIAGIGNFEGSEDRFCPARYAARLSQAFTATDASVIVEAEEVFPVNDIS-TP 550
Query: 555 DGNTYCFSDGIGKISLSFA----------RQVAQKCGLSHTPSAFQIRYGGYKGVIAVDR 604
DG Y F+DG+G +S A R+ +K + P+AFQIR+ G KG+++VD
Sbjct: 551 DG-AYHFTDGVGTMSKGMASETWAELQRWRKRTKKT--KNVPAAFQIRFMGSKGMLSVDH 607
Query: 605 N-SFRKLSLRRSMLKFESRNRMLNVTK-WSESMPCFLNREIISLLSTLGVKDEVFEAMQQ 662
R++ LR SM+KFES + L + + + +LNR +I ++ LGV E F Q+
Sbjct: 608 ALHGREVCLRHSMIKFESSSDTLEIARAFDRPGRYYLNRPLIMVMEGLGVPYESFLRHQE 667
Query: 663 ----------QQLILLGKML--------INREAALDVLQKLNGVDSKNILVKMLLQGYEP 704
+ L KM + L L+KL V KN+ +
Sbjct: 668 AAVQNVHSSSESLAKCAKMFESFGLGTAFRVPSLLLNLEKLCNV--KNLDANVF------ 719
Query: 705 NVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREE 764
Y M+ + H + L +LK+R RI +P L+G D L G++FV +
Sbjct: 720 ----YRQMIEFATH-HVLRELKNRARIPIPGAYTLVGVADVHRYLGPGEIFVCI------ 768
Query: 765 LESKDQSFFHRVDDKTSI--VKGKVLVTKNPCLHPGDVRVLEAVYEMK----LEEKDYVD 818
R D + ++G VL++++P +HPGDV+V+ A+ K ++ +
Sbjct: 769 ----------RPHDSNEVTYLEGDVLISRSPTIHPGDVQVVRAIGRPKAGSPFAKEPLAN 818
Query: 819 CIIFPQKGERPHPNECSGGDLDGD---IFFISWDNDLIPCETEPPMDYTGRRSRIMDHDV 875
++F +G RP P GGDLDGD + ++ + P T Y + +
Sbjct: 819 TVVFSVRGTRPLPTMLGGGDLDGDEYNLIPLNSHPEFRPARTVEAASYAPAPRKTLTRAA 878
Query: 876 TLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAP 935
+ ++ F +D++ D LG ++ L+ AD+ CL L+ LHS AVDF K+G P
Sbjct: 879 DMRDVADFVIDFINYDVLGIVAIHWLIIADQSNKSIFDEDCLTLSQLHSDAVDFQKSGQP 938
Query: 936 AEMPL--ALKPKEFPDFMERE----DKPRYI-SFGVLGKLYRA-TLDSIMQ 978
+ AL + PD+ E + RY S +G+L RA TL S+ +
Sbjct: 939 VALDRIPALHFRAKPDWNAPETVKANSARYYKSQRAIGRLARAITLPSLKE 989
>gi|392595557|gb|EIW84880.1| RdRP-domain-containing protein [Coniophora puteana RWD-64-598 SS2]
Length = 1235
Score = 202 bits (515), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 206/743 (27%), Positives = 344/743 (46%), Gaps = 105/743 (14%)
Query: 304 VLFQLNSLVHNQKVSLVAADAEL--IQILSGLSMETALMVLQKLHKLKSICYDPVSFVKT 361
+ FQ+ +L+HN ++ ++ L + ++ S E A V++ ++ I P S
Sbjct: 323 IAFQVAALLHNGVLNTQEVESILPVVDKMASQSQEIASEVMRSF--IEKISTRPPSQTPK 380
Query: 362 QLHVLGRNCKSIPLSSHKRLIDHN-VMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYA 420
Q + R +SI +R+ + CY +TP ++ GP + SN V++ + +
Sbjct: 381 QFLEVVRKSRSI--DEVRRISSASGRFFCYHVTITPTRMLLEGPYITQSNRVIRKYEGFE 438
Query: 421 SDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFL 480
F+RV F +ED L R + + + + R+ +L++GI I +H+ FL
Sbjct: 439 DHFLRVEFRDED-------RLQFRWDREVDGQSF---LEDRVGGMLKNGIDIAGRHFTFL 488
Query: 481 AFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNK-IRSVSKCAARMG------------ 527
A+S+S LR++SVW D +SA ++R +G F + I SK AAR+G
Sbjct: 489 AYSSSALRSHSVWFVNEEDFMSATNIRDSLGVFAETIYQPSKYAARIGVSNGFLRFDLHM 548
Query: 528 -----QLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKC-- 580
Q FS++ ++ + + I D++ + F+DG+G IS R V +K
Sbjct: 549 FNLPQQAFSATDPSVKISKDQWKEIRDIK---NAQGQLFTDGVGTISRELGRMVWEKLCE 605
Query: 581 ------GLSHTPSAFQIRYGGYKGVIAVDRN-SFRKLSLRRSMLKFESRNRMLN---VTK 630
S PSA+QIR+ G+KGV+A+D L R SM KF + V
Sbjct: 606 ARRDRGANSVIPSAYQIRFLGFKGVVAIDEQLEGIMLCPRTSMRKFADQTEHAEIEIVRA 665
Query: 631 WSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDS 690
+ + LNR ++ +L GV F + LL + A D ++K V
Sbjct: 666 FDKPNQPNLNRPLVMVLEDSGVDKGAF-------MELLDDAVAGARMAHDSVEKFVNVLR 718
Query: 691 KN----------ILVKMLLQGYE----PNVE----PYLSMMLLSHHENQLSDLKSRCRIY 732
N IL+K+ G + N E +L+ + + L D+K RI
Sbjct: 719 SNRLGFSYRLAHILLKLDALGLDLKSNSNQESLDTAFLARVRGCVINHVLRDIKHFARIP 778
Query: 733 VPKGRLLIGCFDETGILNYGQVFVR------VTMTREELESKDQSFFHRVDDKTSIVKGK 786
+P+ L+G DE G +V+ T+ ++ + Q+F ++ ++G
Sbjct: 779 IPQSYQLVGVADE------GPAYVKDGHENVYTLPPGKIFACIQNF----GEEPKWLEGP 828
Query: 787 VLVTKNPCLHPGDVRVLEAVYEMKLEE----KDYVDCIIFPQKGERPHPNECSGGDLDGD 842
+++++P +HPGDV+ + AV + + + + ++ P +G RP N GGDLDGD
Sbjct: 829 CVISRSPVVHPGDVQRVYAVGKPPANQLCLFEHLRNVVVLPSQGPRPLANCLGGGDLDGD 888
Query: 843 IFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLV 902
++ I L+ E P Y R+ R +D T++++ F V+Y+ +D +G IS H++
Sbjct: 889 LYEIIMFQRLLITEHSDPAQYEDRKPRTLDRPSTIDDVCDFVVEYIHSDVVGLISDKHII 948
Query: 903 HADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAE---MPLALKPKEFPDFMERE-DKPR 958
AD+ D R CL LA LHS AVD+ K G P + +P L P + PD+ E PR
Sbjct: 949 IADQSKDGTRDDLCLKLADLHSQAVDYPKNGNPVDIRRLPRNLIPYK-PDWHAAEVSSPR 1007
Query: 959 ----YISFGVLGKLYRA-TLDSI 976
Y S LG +YR+ TL+ I
Sbjct: 1008 SLDYYESDRALGHMYRSVTLEEI 1030
>gi|170117206|ref|XP_001889791.1| RNA-directed RNA polymerase [Laccaria bicolor S238N-H82]
gi|164635257|gb|EDQ99567.1| RNA-directed RNA polymerase [Laccaria bicolor S238N-H82]
Length = 1690
Score = 202 bits (514), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 162/503 (32%), Positives = 242/503 (48%), Gaps = 45/503 (8%)
Query: 462 ILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSK 521
I +L+ G + D Y F S SQLR S ++ +N++ +D +G F +I +++K
Sbjct: 93 IARLLKAGFFLNDIQYRFYHHSNSQLRGRSCFLRQANNDKELDDRIYQLGDFGRIMNIAK 152
Query: 522 CAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKIS--LSFARQVAQK 579
A R+G LFSS++ + + + IPD++ DG+ FSDG G IS LS A A++
Sbjct: 153 RAKRIGLLFSSAQIDYRLDPKYIADIPDIQ---DGDE-LFSDGCGLISKRLSIALSKAKR 208
Query: 580 C---GLSHTPSAFQIRYGGYKGVI----AVDRNSFRKLSLRRSMLKF-ESRNRMLNVTKW 631
+ +TP+ FQIRY GYKGV+ +D R+SM KF + + +V
Sbjct: 209 ITFRNVRYTPTVFQIRYLGYKGVLMLHPQLDAEGKHLAQFRKSMKKFTTTTDHTFSVVGH 268
Query: 632 SESMP-CFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDS 690
S LN +II LLS LGV +E Q + L + AA+D L+ +D
Sbjct: 269 SRPYTFGRLNNDIIVLLSCLGVTNEKLLNKQDEYFQWLRNATEDPTAAVDF---LSCIDQ 325
Query: 691 KNILVKMLLQGY-EPNVEPYLSMMLL---SHHENQLSDLKSRCRIYVPKGRLLIGCFDET 746
+ K+LL G +P+V + + L + + ++ KS R+ + + R L G D
Sbjct: 326 YPLAGKVLLNGINDPDVAKEIRRLQLGEIARYTDEREKFKS--RMIIRESRRLFGVCDPF 383
Query: 747 GILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAV 806
+L G+V +R+ +R+ ++ + G VL+ +NPCLHPGD L AV
Sbjct: 384 QVLKEGEVHIRIMASRK--------------GPSTPIHGDVLIVRNPCLHPGDCLKLRAV 429
Query: 807 YEMKLEEKDYVDCIIF---PQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDY 863
+ KL VDC++F + G P+ SGGDLDGD F + WD DL+P DY
Sbjct: 430 HNDKLSH--LVDCLVFASVARPGHHAAPSMSSGGDLDGDEFLVCWDKDLVPPRISESYDY 487
Query: 864 TGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLH 923
G + RI VT E++ F Y L +S H A P A S +C L LH
Sbjct: 488 PGNKERI-SKKVTREDLAVHFASYNAAG-LARVSALHNKWARYSPQGALSVQCQELNALH 545
Query: 924 SMAVDFAKTGAPAEMPLALKPKE 946
S +VD A P + +P E
Sbjct: 546 SQSVDGAGIKIPDRLTKPPEPTE 568
>gi|395333779|gb|EJF66156.1| RdRP-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 1220
Score = 201 bits (511), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 176/646 (27%), Positives = 306/646 (47%), Gaps = 79/646 (12%)
Query: 379 KRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPA 438
+R D CY TP +I GP + SN V++ FA Y F+RV F +ED
Sbjct: 411 ERARDSGKFKCYHVTFTPTRILLEGPYVSQSNRVIRQFAGYEDHFLRVDFRDED------ 464
Query: 439 NALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASN 498
L R + T + R+ L+ G +G +H+EFLA+S S LR ++VW
Sbjct: 465 -RLQYRWAREVDGT---TLLEERVGGTLKHGFDLGGRHFEFLAYSQSALREHAVWFMNPF 520
Query: 499 DE-----VSAEDVRGWMGCFNK-IRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEV 552
D V + +R +G F+K I + SK AAR+ Q F+++ ++ + E + D+
Sbjct: 521 DHPTRGYVDGQRIRDSLGDFSKVIDAPSKYAARLAQAFTATDPSVSISHDQCEEMSDM-- 578
Query: 553 TSDGNTYCFSDGIGKISLSFARQVAQKCGLS--------HTPSAFQIRYGGYKGVIAVD- 603
Y F+DG+G IS + + + PSA+QIRY GYKG++ +D
Sbjct: 579 --GEEPYLFTDGVGTISPKLGDMIWEALCTAKEDLRRHERKPSAYQIRYLGYKGMVGIDE 636
Query: 604 RNSFRKLSLRRSMLKFESRNR---MLNVTKWSESM-PCFLNREIISLLSTLGVKDEVFEA 659
R K+ LR SM KF++ ++ + + +W ++ +LNR ++ +L GV VF+
Sbjct: 637 RLEGVKMRLRPSMNKFDALDKDVAPIEIARWFDNPGTSYLNRSLVMILEDRGVDKAVFQK 696
Query: 660 MQQQQLILLGKMLINREAALDVLQKLN-------------------GVDSKNILVKMLLQ 700
+Q + + + + + + +L+ N G+ K + L
Sbjct: 697 LQDKAVEAVVTASDSIDGTVTLLKTHNIGLSLGLPYILRGLKAIGMGMKEKEVTTGTL-- 754
Query: 701 GYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTM 760
+ +L ++ + L D+K RI +P LL+G DE V +
Sbjct: 755 -----NDTFLYSLIGYAQAHILRDMKHSARIPIPDSYLLVGLADEGPAYEAEGVQNVFCL 809
Query: 761 TREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEE----KDY 816
++ + Q+ DD+ + ++G V+++++P +HPGDV+ + A+ + ++ ++
Sbjct: 810 KENQIFACVQN---ETDDEPTYLQGVVVISRSPVVHPGDVQRVYAIGKPPDDKVCFFRNL 866
Query: 817 VDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDY--TGRRSRIMDHD 874
+ ++ P G+R + GGDLDGD++ + + L+P E P Y G +
Sbjct: 867 RNVVVLPSVGKRSLASMLGGGDLDGDLYSVIKYSPLLPTEHADPGSYEPVGTKRLPDGRQ 926
Query: 875 VTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGA 934
T+++I F V+Y+ +D LG +S HL+ AD+ + CL LA L S AVD+ K G
Sbjct: 927 STVDDICDFVVEYLNSDVLGLLSDRHLIIADQSREGTNDPACLDLAQLCSQAVDYPKNGI 986
Query: 935 PAEM----PLALKPKEFPDF-MEREDKPR----YISFGVLGKLYRA 971
P ++ L ++ K PD+ M ++ PR Y+S LG+L+R+
Sbjct: 987 PVDIHDSPRLLIRFK--PDWKMAEDNDPRDTDYYLSPRALGELFRS 1030
>gi|389751599|gb|EIM92672.1| RdRP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 1228
Score = 201 bits (510), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 180/635 (28%), Positives = 308/635 (48%), Gaps = 77/635 (12%)
Query: 381 LIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANA 440
L D V + VTP + GP E SN V++ + K F+RV+F++E N
Sbjct: 413 LNDPGVFESFHIAVTPTIMALEGPLPERSNRVMRMYPKDHDCFLRVSFMDE-------NR 465
Query: 441 LSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASND- 499
L R I + I S I IL +G+V+ + + FL +S S L++++VW F +D
Sbjct: 466 LQYRSNRDIDGPLF---INSWITRILHEGMVVAGRKFRFLGYSQSALKSHTVW-FVLDDP 521
Query: 500 ---EVSAEDVRGWMGCFNKI---RSVSKCAARMG----QLFSSSKQTLVVPVQDVEMIPD 549
E+ E++ +G F+ + R + C AR G Q F+++ ++VV ++V ++ D
Sbjct: 522 ERPELRVENIIRGLGQFDNLKYDRQLIYCPARYGARISQAFTATDPSIVVRAEEVFLLED 581
Query: 550 VEVTSDGNTYCFSDGIGKISLSFARQVAQKCG---------LSHTPSAFQIRYGGYKGVI 600
++ +CF++G+G +S + A+ +++ L+ P AFQ+R+ G KGV+
Sbjct: 582 IK----RGQWCFTEGVGTLSRAMAKAISKTLKDSGKRAFRRLTTHPGAFQVRFQGSKGVV 637
Query: 601 AVD-RNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPC--FLNREIISLLSTLGVKDEVF 657
VD R + +R SM+KFE+ + + P +LNR +I +L LGV VF
Sbjct: 638 TVDPRLRGNAICVRPSMIKFEAPESLDVEIAQAFDRPSKYYLNRPLIMILEALGVPYRVF 697
Query: 658 EAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVE--PYLSMM-- 713
+ +Q + + + K + ++++ G+ + L + L + +VE P S
Sbjct: 698 DRLQTRAITQVHKASRSLRGLAEIMEAY-GLGTSYRLPSIFLSLSKLHVEAPPDDSFFHR 756
Query: 714 ---LLSHHENQLSDLKSRCRIYVPK-GRLLIGCFDETGILNYGQVFVRVTMTREELESKD 769
HH L DLK RI + + G L+G D G L +V+ + +
Sbjct: 757 VNDFTVHH--ILRDLKHHARIPLDRHGWTLVGVADIHGWLREKEVYAYIRLP-------- 806
Query: 770 QSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVY----EMKLEEKDYVDCIIFPQK 825
D + ++G+V+V+++P +HPGDV+VL AV + L E + ++F +
Sbjct: 807 -------DGEAFYLEGRVMVSRSPTIHPGDVQVLTAVKPPHGSIYLREP-LANTLVFSIQ 858
Query: 826 GERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFV 885
G RP GGDLDGD++ ++ +L+P + P +Y RI+D T+ +I F
Sbjct: 859 GTRPVYTGLGGGDLDGDLYNVTTLRELMPPKNYHPANYDPAVKRILDRRSTIHDIADFVA 918
Query: 886 DYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAE------MP 939
DY+ +D +G ++ L+ AD+ P CL L LHS AVD+ K+G P +
Sbjct: 919 DYINSDIIGLVAINWLIIADQSPQGIFDPDCLSLCELHSNAVDYPKSGNPVSAKAIPFLK 978
Query: 940 LALKPK-EFPDFMEREDKPRYI-SFGVLGKLYRAT 972
+ KP P+ ++ +D Y S +G+L+RA
Sbjct: 979 FSAKPDWNAPETVDLKDTANYYQSEKAIGRLFRAV 1013
>gi|449547217|gb|EMD38185.1| hypothetical protein CERSUDRAFT_113336 [Ceriporiopsis subvermispora
B]
Length = 1207
Score = 200 bits (508), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 229/899 (25%), Positives = 378/899 (42%), Gaps = 179/899 (19%)
Query: 347 KLKSICYDPVSFVKTQLHVLGRNCKSIPLSSHKRL-----------IDHNVMSCYRALVT 395
K + D + QL V R+ K PL R+ I +CY T
Sbjct: 356 KYPATAGDILRHYTEQLRV--RDPKETPLQCFNRVVPTQYGLEPLQISGGNFTCYHVTFT 413
Query: 396 PMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEED-----WSKLPANALSTSIQRGIF 450
P K+ GP + SN V++ + + F+RV F +ED W+K +S+
Sbjct: 414 PTKMVLEGPYVIQSNRVIRRYVGFQDRFIRVDFRDEDRLQYRWAK---EVDGSSL----- 465
Query: 451 SKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDE-----VSAED 505
++ R+ IL+ G + + +EFLA+S S LR ++VW + V+A+
Sbjct: 466 -------LHDRVGGILRKGFDLAGRRFEFLAYSTSALREHAVWFMNPFEHPREGLVTAQG 518
Query: 506 VRGWMGCFNK---IRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFS 562
+R +G F+ I+ SK AARM Q F+++ ++ + E +PD+ + Y ++
Sbjct: 519 IRESLGDFSGSKVIKQPSKYAARMAQAFTATDPSVSITRDQWETVPDL----GEDPYLYT 574
Query: 563 DGIGKISLSFARQVAQK-CGLSH-------TPSAFQIRYGGYKGVIAVD-RNSFRKLSLR 613
DG+G IS + C S PSA+QIR+ G+KGV+AVD R K+ LR
Sbjct: 575 DGVGTISAELGDMIWDALCAASPDGKRRGVKPSAYQIRFLGFKGVVAVDERLQGIKMRLR 634
Query: 614 RSMLKFESR------NRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLIL 667
SM KF++R ++ + C+LNR ++++L GV F +Q++
Sbjct: 635 PSMDKFKARADEEAEAKIEIARAFDYPGTCYLNRPLVTVLEDRGVDKSAFMRLQERIKAE 694
Query: 668 LGKMLINREAALDVLQKLNGVDSKNILVKMLLQG---------YEPNVE----PYLSMML 714
+ + A+ VL K N + + L +LQG YE NV+ ++ +L
Sbjct: 695 IYTASDSLAQAISVL-KANSIGNGYKL-GFILQGLKNIGMGLPYEKNVQVLNDSFIDRLL 752
Query: 715 LSHHENQLSDLKSRCRIYVPKGRLLIGCFDETG-----------ILNYGQVFVRVTMTRE 763
L ++K RI +P+ LL+G DE IL G ++ V
Sbjct: 753 QYAKNYVLRNIKHDARIPIPESYLLVGIADEGPAYEAEGCENVYILPEGHIYACVQ---- 808
Query: 764 ELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEE----KDYVDC 819
H D + ++G ++VT++P +HPGDV+ + A+ + + ++ +
Sbjct: 809 ----------HPDDPEPIYLEGNIMVTRSPTVHPGDVQQVTAIGKPPEGKICFFRNLKNV 858
Query: 820 IIFPQKGERPHPNECSGGDLDGDI-------------FFISWDNDLIPCETEPPMDYTGR 866
++ P G GGD + + + L+P E++ Y
Sbjct: 859 VVLPSTGN-------CGGDCPRSLASCLGGGDLDGDLYQVVKYAPLVPLESQLAGSYESA 911
Query: 867 RSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMA 926
+ +D D T+++I F V+Y+ +D LG +S HL+ AD+ CL LA L S A
Sbjct: 912 GTHTLDRDSTVDDIIDFIVEYIDSDVLGLLSDRHLMIADQSKYGVNDPSCLELARLCSQA 971
Query: 927 VDFAKTGAP---AEMPLALKPKEFPDFMERED---KPR--YISFGVLGKLYRATLDSIMQ 978
VD+ K G P + P L P + P++ + ED +P Y S LG+L+R +I
Sbjct: 972 VDYPKNGIPVDKGDAPRTLLPYK-PNWKQAEDNDSRPTDYYESNRALGELFR----NISI 1026
Query: 979 IRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAES------HKEMYEEEMNALMNYYGAS- 1031
N + K+ A+Y L+ +A E+ HK EE +L + Y
Sbjct: 1027 TEPNRPGNNKV--ATYLPPLQDSISKALRPYIEAQLHTFHHKNDQFEETKSLFSRYLDEL 1084
Query: 1032 -----------------TEDEILTGNLRNRAS-YLQRDNRRYGDMKDRILLSAKNLQNEA 1073
TE+E++ G + R S + R R+Y R+ L L +
Sbjct: 1085 RYICVTHALSEAPEVRLTEEEVVVGVIMARCSQHRWRTERQY-----RMRLHVSTLVGDI 1139
Query: 1074 --KEWFGSSCKENEHPQ-------LASAWYHVTYSPSYCKERMALLSFPWIVGDILLNI 1123
K F + E P L+ AW +S + E SF I ++LN+
Sbjct: 1140 SRKLRFARPARAEEEPSRPQLLEGLSRAWLAWDFSTRHA-EFFGAKSFGLITLGVILNL 1197
>gi|154273921|ref|XP_001537812.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150415420|gb|EDN10773.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 652
Score = 199 bits (506), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 146/468 (31%), Positives = 237/468 (50%), Gaps = 59/468 (12%)
Query: 672 LINREAALDVLQKLNGVDSKN---ILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSR 728
+I E A+ +LQ VD IL M+ G++ + EP++S +L Q+ LK +
Sbjct: 1 MIQEEQAVHLLQ--THVDPNQMTLILADMVRDGFQGSKEPFVSSILELWRTWQIKYLKEK 58
Query: 729 CRIYVPKGRLLIGCFDETGILNYGQVFVRVT-----MTREELESKDQSFFHRV----DDK 779
+I + +G L+GC DET L + + R + T EE + F +V + K
Sbjct: 59 AKIAIDEGAFLLGCIDETKTL---KGYFRSSRPGQDATYEESVACLPEIFVQVWRHSEGK 115
Query: 780 TSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDL 839
I++G ++ +NP LHPGD+RV++AV L D ++ PQ G+R + CSGGDL
Sbjct: 116 YVIIEGVCILARNPSLHPGDIRVVKAVNAPSLHH--LRDVVVLPQTGDRDISSMCSGGDL 173
Query: 840 DGDIFFISWDNDLIPCE-TEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAIST 898
DGD + + WD D++P + PMDY + ++D DVT+++I KF+V+YM ND L I+
Sbjct: 174 DGDDYVVIWDQDILPTDWFHNPMDYAAPKPEVLDRDVTVDDITKFYVNYMQNDRLPQIAL 233
Query: 899 AHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPR 958
AHL AD + ++ KCL LA LHS AVD+ K+G P ++ LKP+ +P FMER+ + +
Sbjct: 234 AHLALADYMEEGVKNEKCLQLAALHSAAVDYNKSGIPVKLTRDLKPRRWPHFMERKMRNK 293
Query: 959 YISFGV-LGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMY 1017
Y F L Y A + IM A ++ E++ + F+ SH EM
Sbjct: 294 YADFATNLKTQYDADMRRIM--------------AQHEIKTELEVWSTFV---LSHSEMT 336
Query: 1018 EEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWF 1077
++ Y + ++ +LR + + + + + L+ + +++W
Sbjct: 337 KD--------YKFHEDIGRISSSLREKFRIMCYEKVGGKEFEHLAPLAVAMYKVTSEQW- 387
Query: 1078 GSSCKENEHPQLASAWYH-VTYSPSYCKER-MALLSFPWIVGDILLNI 1123
++A A +H V S+ +ER + L+SFPWI+ IL I
Sbjct: 388 ----------EIAVAAHHDVFVDNSHFQERKLPLISFPWILQPILGRI 425
>gi|170094614|ref|XP_001878528.1| RNA-directed RNA polymerase [Laccaria bicolor S238N-H82]
gi|164646982|gb|EDR11227.1| RNA-directed RNA polymerase [Laccaria bicolor S238N-H82]
Length = 1051
Score = 198 bits (504), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 179/691 (25%), Positives = 308/691 (44%), Gaps = 112/691 (16%)
Query: 380 RLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPAN 439
R + +++S +TP ++ GP SN ++ + +F+RV F +ED S N
Sbjct: 205 RGFNASLISAAHVTITPTRMLLEGPLPTQSNNAIRKYKGCDDNFIRVDFRDEDRSSYKRN 264
Query: 440 ALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFAS-- 497
+ + + R+ +L+ GI+I +H++FLA+S S LR ++VW +S
Sbjct: 265 QDVDDM----------SVLRERVGDVLKQGIMIAGRHFQFLAYSTSSLREHAVWFMSSFE 314
Query: 498 --NDEVSAEDVRGWMGCFNKI-RSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEV-- 552
+ ++ + V +G F+ + + SK AAR+ Q FS++ ++ + + E + D+E
Sbjct: 315 SGGEMITPQKVVRDLGDFSALAQQPSKYAARIAQKFSATDPSVHIHGHEWERVDDIEYIE 374
Query: 553 -----TSDGN------TYCFSDGIGKISLSFARQV-----------AQKCGLSHTPSAFQ 590
DG+ +CF+DG+G IS S +++ +K L PSA+Q
Sbjct: 375 ERTIRNDDGDIETRKTVHCFTDGVGTISESLGQEIFETLRNNEGRLEEKAPL---PSAYQ 431
Query: 591 IRYGGYKGVIAVDR-----NSFRKLSLRRSMLKFES--RNRMLNVTK-WSESMPCFLNRE 642
IR+ G KGV+ VD+ +S ++ LR SM+KF S ++ L +++ + C+LNR
Sbjct: 432 IRFMGSKGVVVVDKQLDKNSSGIRMRLRPSMIKFPSLAQSEPLEISEAFRYPKLCYLNRP 491
Query: 643 IISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGY 702
++ L LGV+ + F +Q + + + E +++ G K+ +L+ +
Sbjct: 492 LVMFLEDLGVRLQTFLDLQNAAIAEAQTIDDSLEQFRSIMETHRGGLGKSFDFPDILKHF 551
Query: 703 E--------PNVEPYLSMMLLSHHENQ-----LSDLKSRCRIYVPKGRLLIGCFDETGIL 749
E + P + + N L ++K RI +P LL+G DE
Sbjct: 552 EDDGFDLHSQDGRPGIDNQFIKQLRNVARIEVLREIKHSARIKIPDSYLLVGVADEGPAY 611
Query: 750 ---NYGQVFVRVTMTREELESKDQSFFHRVDDKTSI-VKGKVLVTKNPCLHPGDVRVLEA 805
Y V+ E E + + DK + G ++++P HPGDV+ +
Sbjct: 612 RKDGYQNVY-------ELPEGHIYACVQKAGDKEPTWLSGSCSISRSPVAHPGDVQRVRC 664
Query: 806 VYEMKLEE----KDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPM 861
+ + ++ V+ ++ P G+R + GGDLDGDI+ + L+P + P
Sbjct: 665 IGKPPEDKLCLFSHLVNVVVLPSVGKRSLASCLGGGDLDGDIYSVIMLEPLLPTQMVVPA 724
Query: 862 DYTGRRSRIMDHDVTLEE-IHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLA 920
Y R + ++EE + F V+Y+ +D LG +S LV AD+ + C HLA
Sbjct: 725 SYDSLPPRALPPGQSIEEAVCDFIVEYIHSDVLGLLSNRLLVIADQSKEGVFDQDCEHLA 784
Query: 921 TLHSMAVDFAKTGAPAEMPLALKPKEF----PDFMERE-DKPR----YISFGVLGKLYRA 971
L S AVD+ K G P ++ P PD+ E + PR Y S LG ++R
Sbjct: 785 VLCSQAVDYPKQGNPVDLSGGALPHPLIRCKPDWQSAEINAPRQTDYYKSTRALGVMFR- 843
Query: 972 TLDSIMQIRSNAIWSEKIAEASYDHDLEVDG 1002
DH LEVDG
Sbjct: 844 -----------------------DHRLEVDG 851
>gi|392587026|gb|EIW76361.1| RdRP-domain-containing protein, partial [Coniophora puteana
RWD-64-598 SS2]
Length = 935
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 203/799 (25%), Positives = 346/799 (43%), Gaps = 117/799 (14%)
Query: 299 NLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSF 358
+L V FQ+ +L+HN ++ ++ + I++ LS ++A L SF
Sbjct: 55 SLDWPVAFQVAALLHNGLLNTQEIES-IRPIITQLSNKSAEHTGDTLRLFTEKTRSQTSF 113
Query: 359 VKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAK 418
+ L +L + +R C +TP ++ GP + SN V++ + +
Sbjct: 114 -RQPLELLDELVNYRASNQPRRTPPAGHFFCSHVTITPTRMLLEGPYITQSNRVIRKYDQ 172
Query: 419 YASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYE 478
+ F+RV F EE+ K +R + + T SR+ L+ G+ + + +
Sbjct: 173 FKDHFIRVEFREENRQKY-------RWEREVDVLEFLT---SRVGAKLKGGVDVAGRRFS 222
Query: 479 FLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRS-VSKCAARMG---------- 527
F+A+S S LRN+S+W + +G F+ + +K AARMG
Sbjct: 223 FVAYSPSALRNHSLWFVCEEGFRPPVQILKELGNFSATTNQPAKRAARMGVSTNACYVPQ 282
Query: 528 -------QLFSSSKQTLVVPVQDVEMIPDVEVTSDGNT---YCFSDGIGKISLSFARQVA 577
Q FS+++ ++ V + IPD+ + + F+DGIG IS ++
Sbjct: 283 CTKASFQQAFSATQPSIKVSKDQIVEIPDITGPHNNPARPPHVFTDGIGTISPKLRDRIC 342
Query: 578 QKCGLSHTPSAFQIRYGGYKGVIAVDRNSFRKLSLRR-SMLKF----ESRNRMLNVTK-W 631
+ +S P AFQ+R G KGV VD K+ R SM KF ES + + + + +
Sbjct: 343 EALSISTKPDAFQVRCAGLKGVFVVDHQLEGKIMCPRPSMKKFLPLDESEDAEIEIVRAF 402
Query: 632 SESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSK 691
+ FLNR ++ +L GVK E F L L + + A D + + V K
Sbjct: 403 DKPGRSFLNRPLVMVLEDRGVKTEGF-------LELFNDAVADARTAHDSVDQFVAVLQK 455
Query: 692 NIL------------------VKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYV 733
+ L V Q E +L+ + L ++ L D++ RI +
Sbjct: 456 HRLGIPYRLDQTLLKLKALGLVLRTGQDQESLDTDFLARVRLCVIKHILRDIRHSARIPI 515
Query: 734 PKGRLLIGCFDE-TGILNYGQVFVRVTMTREELES--KDQSFFHRVDDKTSIVKGKVLVT 790
P L+G DE +N G+ V T+ + ++ + +D S D + ++G +++
Sbjct: 516 PGSYQLVGVADEGQAYINAGKENV-FTLRQGQIYACIQDPS-----DAEPQWLQGTCVIS 569
Query: 791 KNPCLHPGDVRVLEAVYEMKLEE----KDYVDCIIFPQKGERPHPNECSGGDLDGDIFFI 846
++P +HPGDV+ + A+ + + + ++F +G P N C GGD FI
Sbjct: 570 RSPVVHPGDVQRVYAIGKPPENQLCAFARLKNVVVFASRGTLPLAN-CLGGDGHVTRLFI 628
Query: 847 SWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADR 906
+ D P +Y R +D VTL++I F V+Y+ +D +G ++ H++ AD
Sbjct: 629 TEQVD--------PTEYDAREPYTLDRPVTLDDICDFVVEYIHSDVVGLVADTHIIIADA 680
Query: 907 DPDKARSSKCLHLATLHSMAVDFAKTGAPAE---MPLALKPKEFPDFMEREDKPR----- 958
D +CL LA +HS AVD+ K G P + MP L P + PD+ E ED+
Sbjct: 681 SSDGTLDRRCLELAKMHSQAVDYLKNGIPVDIRRMPRRLIPFK-PDWHEAEDESSHPCDY 739
Query: 959 YISFGVLGKLYRATL----------------DSIMQIRSNAIWSEKIAEASYDHDLEVDG 1002
Y S LG +YR L DSI Q+ + +A+AS+ V
Sbjct: 740 YRSNRALGHMYRTKLDEDRETLAHVEVDSYGDSISQVVQQRVNGYPLAQASHQEQRNV-- 797
Query: 1003 FEAFLGVAESHKEMYEEEM 1021
L + E+ + Y++E+
Sbjct: 798 ----LRIVETIFKRYQDEL 812
>gi|393244712|gb|EJD52224.1| RdRP-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 1061
Score = 196 bits (497), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 186/647 (28%), Positives = 305/647 (47%), Gaps = 89/647 (13%)
Query: 380 RLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPAN 439
+L +V+ + +VTP ++ GP+ SN V++++ +Y F+RV F ED
Sbjct: 260 KLSSPSVLFSHHLVVTPSGLHLEGPDPNKSNRVLRHYDQYTQFFLRVRFANED------- 312
Query: 440 ALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWM---FA 496
L R + + + +Y R+ IL++GI + + ++FL +S S L S W F
Sbjct: 313 RLQFRWPRDVDGESF---VYERVGGILKNGIEVAGRKFQFLGYSLSSLHQYSAWFVTDFY 369
Query: 497 SNDE--------VSAEDVRGWMGCFNK-IRSVSKCAARMGQLFSSSKQTLVVPVQDVEM- 546
+ E V+ + +R +G F K I S ARM Q FS++ T+ + ++E
Sbjct: 370 AEVEPGSGHRVRVTPQYIRDHLGNFAKVIDCPSLYGARMAQAFSATDPTITLADGEIEYN 429
Query: 547 IPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPS-------AFQIRYGGYKGV 599
+PD+ T G SDG G IS + ++ ++ T + A+QIR GG KGV
Sbjct: 430 VPDIR-TETGE--LMSDGCGTISPELSLEMNEQRIHGRTRAEWEKVVNAYQIRVGGAKGV 486
Query: 600 IAVD-RNSFRKLSLRRSMLKFESRNRM-LNVTKWSESMPCFLNREIISLLSTLGVKDEVF 657
+ VD R RKL LR SM+KF++ + + V + +LNR +I L TLGV+ VF
Sbjct: 487 VGVDPRLEGRKLRLRVSMIKFDALHSTDVEVANIARPARMYLNRPLIMTLETLGVRRHVF 546
Query: 658 EAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQ---GYEPNV-------- 706
E +Q + + + + + KL +++ L+ G+ +
Sbjct: 547 ETLQANVVRTAHEAGDSIRRFIPNVGKLGDRFQLRFVLEQLVDIGCGFRDDCSETDGVVL 606
Query: 707 -EPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGIL-NYGQVFVRVTMTREE 764
+ ++ ++ S L D+K RI VP+ L+G DE IL N +V V V
Sbjct: 607 DDSFVRQLVKSVLWETLRDVKYSARIQVPESWTLLGKVDEHDILTNEKEVMVYVM----- 661
Query: 765 LESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKD---YVDCII 821
D + ++G L+ ++P +HPGDV+++ + + + ++CII
Sbjct: 662 ----DSDY-----PNGKWLEGPALICRSPVMHPGDVQMVTCISPPQGSDPSRCPLINCII 712
Query: 822 FPQKGERPHPNECSGGDLDGDIFFIS-WDNDLIPCETEP-PMDYTGRRSRIMDHDVTLEE 879
F KG R + +GGD DGD F IS ++ I P P R + + T+E+
Sbjct: 713 FSAKGTRSLASCLAGGDYDGDEFHISQYEQLFIKKSAHPAPAPEVVERLYVPERQGTIED 772
Query: 880 IHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMP 939
+ FFVDY+ D++G ++ HL+ AD++ ++ KCL LA ++S AVDF KTG P
Sbjct: 773 VADFFVDYINRDSVGLLARQHLIIADQNDRGVKAPKCLTLAEMYSRAVDFPKTGIP---- 828
Query: 940 LALKPKEFPDFMEREDKPRYI---------------SFGVLGKLYRA 971
+ P++ P +E + KP +I S LG LYRA
Sbjct: 829 --VPPRDMPA-LEFDAKPDWITNEVAAEEAAGAVYRSTKALGHLYRA 872
>gi|409045817|gb|EKM55297.1| hypothetical protein PHACADRAFT_173398 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1215
Score = 196 bits (497), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 185/648 (28%), Positives = 307/648 (47%), Gaps = 106/648 (16%)
Query: 389 CYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRG 448
C+ +TP ++ GP + SN V++ + Y F+R+ F +ED L R
Sbjct: 410 CHHVTITPTRMLLEGPYVIQSNRVIRQYRGYEDHFIRIDFRDED-------RLQYRWDRD 462
Query: 449 IFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWM---FASNDE--VSA 503
K + + +R+ +L+ G + + +EFLA+S+S LR ++VW F ++ + A
Sbjct: 463 TDGK---SLLENRVGGLLKGGFSLATRKFEFLAYSSSALREHAVWFVNPFYHQEKGWIDA 519
Query: 504 EDVRGWMGCFNK-IRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFS 562
E +R +G F+ I SK AAR+ Q F+++ ++ + E + D+ Y F+
Sbjct: 520 EYIRSSLGDFSAVINCPSKYAARIAQAFTATDPSVEITRDQWEQMDDL----GEEPYLFT 575
Query: 563 DGIGKIS----------LSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVD-RNSFRKLS 611
DG+G IS L AR + + + PSA+QIR+ GYKG++AVD R K+
Sbjct: 576 DGVGTISSELGDMIWEALCSARDDSYRKNIK--PSAYQIRFLGYKGMVAVDGRLKGVKMR 633
Query: 612 LRRSMLKFESRNRMLNVTKWSESM----PCFLNREIISLLSTLGVKDEVFEAMQQQQL-- 665
LR SM KFE + + + C+LNR +I +L GV + F +Q+ +
Sbjct: 634 LRPSMNKFEGPAEETATIEIARAFERPNTCYLNRPLIMVLEDRGVIKQAFLELQEAAVAA 693
Query: 666 -------ILLGKMLINREAALD-------VLQKLNGVD-----SKNILVKMLLQGYEPNV 706
++ + L RE +L V Q LN V +NI +++LQ
Sbjct: 694 IHMSSDSVMQCRQLF-REHSLGGSYRLSYVWQLLNAVGLGMEHEENI--RVVLQ------ 744
Query: 707 EPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGI-----------LNYGQVF 755
+P+ ++ + L +K RI V LL+G DE L GQ++
Sbjct: 745 DPFFERLVQFAKNDVLRSIKHNARIPVLGSYLLVGVADEGPAYEAEGCENVFKLEEGQIY 804
Query: 756 VRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEE-- 813
V + VD++ ++G V ++++P +HPGDV+ + A+ + +
Sbjct: 805 ACVQKS--------------VDEELIWIEGSVTISRSPVVHPGDVQRVTAIGKPPDDGRP 850
Query: 814 ---KDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRI 870
++ + ++ P G R + GGDLDGD++ I W++ L+P E + P Y R
Sbjct: 851 CFFRNLKNVVVLPSTGGRSLASMLGGGDLDGDLYSIIWESTLLPTEHQGPAKYEPVGKRE 910
Query: 871 MDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFA 930
+D +E+I F ++Y+ +D LG +S HL+ A + R +KC+ LA L S AVD+
Sbjct: 911 LDRPSRIEDICDFIIEYIDSDVLGLLSDRHLIIAGELREGTRDAKCIRLAELCSQAVDYP 970
Query: 931 KTGAPAEM---PLALKPKEFPDFMEREDK-PR----YISFGVLGKLYR 970
K G P ++ P L P + PD+ + ED PR Y S LG L+R
Sbjct: 971 KNGVPVDIQNSPRWLIPYK-PDWKKAEDNAPRKTDYYESDRALGDLFR 1017
>gi|336367253|gb|EGN95598.1| hypothetical protein SERLA73DRAFT_162413 [Serpula lacrymans var.
lacrymans S7.3]
gi|336379975|gb|EGO21129.1| hypothetical protein SERLADRAFT_417518 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1199
Score = 195 bits (496), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 206/732 (28%), Positives = 336/732 (45%), Gaps = 109/732 (14%)
Query: 304 VLFQLNSLVHNQKVSLVAAD------AELIQILSGLSME-----TALMVLQKLHKLKSIC 352
V FQ+ +L+HN +S V D L+Q L+ E T + + ++ C
Sbjct: 329 VAFQVEALLHNGLLSTVELDDLRAPIDRLVQEHRKLAGEILRYFTEALASRSPNETPRQC 388
Query: 353 YDPVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYV 412
+D V K L S R C+ TP ++ GP + SN V
Sbjct: 389 FDLVRHSK--------------LKSKLRTSPQGRFFCHHVTFTPTRMLLEGPYIIQSNRV 434
Query: 413 VKNFAKYASDFMRVTFVEED-----WSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQ 467
++N+ Y F+RV F +ED W++ +AL+ F +P R+ IL+
Sbjct: 435 IRNYEGYEDHFIRVDFRDEDRLNYRWNR-ELDALA-------FLEP-------RVGGILK 479
Query: 468 DGIVIGDKHYEFLAFSASQLRNNSVWM---FASNDE--VSAEDVRGWMGCFNK-IRSVSK 521
+G + + +EFLA+S+S LR ++VW F+ E V++E +R +G F+ I SK
Sbjct: 480 NGFELAGRDFEFLAYSSSALREHAVWFVNPFSHPTEGWVTSESIRSGLGDFSGVIFHPSK 539
Query: 522 CAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQV----- 576
AARM Q FS++ ++ + IPD+ T CF+DG+G IS +
Sbjct: 540 YAARMAQAFSATDPSVKIHKSQWREIPDL----GDETTCFTDGVGTISRELGDMIWGALC 595
Query: 577 -AQKCGLSHT--PSAFQIRYGGYKGVIAVDRN-SFRKLSLRRSMLKF---ESRNRMLNVT 629
A++ HT PSA+QIR+ GYKG++A+D + ++ LR SM KF E+ + +
Sbjct: 596 EARRDHGEHTIKPSAYQIRFLGYKGMVAIDAQLTGVQMCLRPSMNKFLGKETEYAEIEIA 655
Query: 630 KWSE--SMPCFLNREIISLLSTLGVKDEVFEAMQQQQL--ILLGKMLINREAAL------ 679
+ E ++P LNR ++ +L G K + F +Q + + + I R +L
Sbjct: 656 RAFERPNLP-HLNRPLVMVLEDRGAKRDSFVKLQDEVIAETRMANDSIERFRSLLEEHNL 714
Query: 680 -------DVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIY 732
+LQ+LN + L Q E P+L+ + L +K RI
Sbjct: 715 GHNFRLSPILQQLNALG----LELKADQTKEAMDSPFLAQTRSCAINHVLRSVKHEARIQ 770
Query: 733 VPKGRLLIGCFDE-TGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSI-VKGKVLVT 790
+PK +L+G DE +N G+ V E K + + D I ++G +++
Sbjct: 771 IPKSYMLVGVADEGPAYVNAGRDNVFCLP-----EGKIYACVQKPGDMEPIWLEGLCVIS 825
Query: 791 KNPCLHPGDVRVLEAVYEMKLEE----KDYVDCIIFPQKGERPHPNECSGGDLDGDIFFI 846
++P +HPGDV+ + A+ + + + ++ P G R + GGDLDGD++ +
Sbjct: 826 RSPVIHPGDVQRVYAIGKPPANKLCLFSHLKNVVVLPSVGARSLASCLGGGDLDGDLYEV 885
Query: 847 SWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADR 906
+ + E P +Y +D T+E++ F V+Y+ +D +G +S H+V AD+
Sbjct: 886 IQHSPFLVTEHHDPAEYPAGSIFTLDRPSTIEDVCDFVVEYIHSDVVGLVSDKHIVIADQ 945
Query: 907 DPDKARSSKCLHLATLHSMAVDFAKTGAPAE---MPLALKPKEFPDFMERE-DKPR---- 958
CL L+ LHS AVD+ K G + +P +L P + PD+ E D PR
Sbjct: 946 SKHGTLDQNCLKLSALHSQAVDYPKNGIKVDISFLPRSLIPYK-PDWHAAEVDSPRKTDY 1004
Query: 959 YISFGVLGKLYR 970
Y S LG LYR
Sbjct: 1005 YESSRALGYLYR 1016
>gi|260793153|ref|XP_002591577.1| hypothetical protein BRAFLDRAFT_105111 [Branchiostoma floridae]
gi|229276785|gb|EEN47588.1| hypothetical protein BRAFLDRAFT_105111 [Branchiostoma floridae]
Length = 3516
Score = 193 bits (490), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 159/515 (30%), Positives = 242/515 (46%), Gaps = 65/515 (12%)
Query: 475 KHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSK 534
+HY F SASQLR + ++ E + G F I++ SK AAR+G L S++
Sbjct: 126 RHYVFFGHSASQLRERTCILYDQGVLGPWERLVNGFGEFEAIKNPSKRAARIGLLLSTAT 185
Query: 535 QTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSH--------TP 586
+ L + ++++ D+E DG + F+DG G IS++ AR++ Q +S P
Sbjct: 186 KCLELDEKEIDHTSDIE--RDG--FTFTDGCGFISVACARKIMQDKDISERYRHQDPPVP 241
Query: 587 SAFQIRYGGYKGVIAVDRNSFRKLSLRRSMLKFESR---NRMLNVTKWSESMPCF---LN 640
S Q R G KGV+ D + + +R S KF+ + + V S P LN
Sbjct: 242 SVIQFRMKGCKGVVMTDPSLPNGVCIRPSQEKFKWKLPPPHVFGVCDDGISQPYAFGQLN 301
Query: 641 REIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALD-------------VLQKLNG 687
++ I +LS LG+KDEVF + Q+ L + ++E A + + G
Sbjct: 302 KQYIMMLSALGIKDEVFLSKQETYFKELDCLETDKEVAFRHLCARGYIGLAERLFSREGG 361
Query: 688 VDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETG 747
D++ + + L+G+ V L N + +I + K R + G D +G
Sbjct: 362 PDNETLEI---LRGFRSRVRRPPKANKLHKLLNTKPEPARALKIPIEKSRNVFGVCDPSG 418
Query: 748 ILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVY 807
L GQ F + T + K Q F KV V K PC HPGD RVL+ V
Sbjct: 419 TLEPGQCFFQAT-----VRGKMQVF----------ADTKVAVVKCPCYHPGDFRVLQCV- 462
Query: 808 EMKLEE-KDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGR 866
+E+ + VDC++FP +GERPH +E +G DLDGD FF+ WD DL+P E P+ Y G
Sbjct: 463 --NVEDCRHLVDCVVFPVQGERPHADEIAGSDLDGDKFFVCWDPDLVPECEEAPLSYPGG 520
Query: 867 RSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMA 926
+ + V++ ++ F +Y ++ L + D SS+C +A L S A
Sbjct: 521 EAAKKER-VSIGDLISVFANY---NSRTVSRLNELFNRWADVKGVTSSECRKIAKLFSTA 576
Query: 927 VDFAKTGAPAEM-PLALKPKEFPDFMEREDKPRYI 960
VD AKTG ++ P LKP PD E+ RY+
Sbjct: 577 VDTAKTGKGVDIPPRLLKP---PDAQEK----RYV 604
>gi|353236430|emb|CCA68425.1| related to NAM7-nonsense-mediated mRNA decay protein (RdRP)
[Piriformospora indica DSM 11827]
Length = 678
Score = 192 bits (489), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 157/496 (31%), Positives = 236/496 (47%), Gaps = 51/496 (10%)
Query: 462 ILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSK 521
I L G+ + K Y F S SQLR++S ++ E +G F I S +K
Sbjct: 93 IARCLTSGVTLNGKKYFFYGHSNSQLRSHSCFLRQGRSEADIHSRILSLGDFKSIDSPAK 152
Query: 522 CAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKC- 580
A R+G LFS+++Q V+ IPD+ V G+T FSDG G IS ++AR +A+K
Sbjct: 153 LAKRIGLLFSAAEQDSVLDPSHTRDIPDLMV---GDT-LFSDGCGLISQAYARLLAKKKQ 208
Query: 581 ----GLSHTPSAFQIRYGGYKGVI----AVDRNSFRKLSLRRSMLKFES-RNRMLNVTKW 631
+ + PS FQIRY GYKGV+ +D + + R+SM KF N L++ K+
Sbjct: 209 AIFRQVKYVPSVFQIRYKGYKGVLMLHPPLDSQNDGYVHFRKSMRKFTGVPNDTLSIIKY 268
Query: 632 SESMP-CFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDS 690
S LN EI++LLS+LG+ DEV + + L + N +ALD ++ +D
Sbjct: 269 SVPYTYGRLNNEIVALLSSLGISDEVLLGKLRAYMSWLRTVCTNLSSALDF---VSSIDK 325
Query: 691 KNILVKMLLQGYE-PNVEPYLSMMLLSHHE--NQLSDLKSRCRIYVPKGRLLIGCFDETG 747
+++ ++LL+G + ++ L L E ++ K + R+ V R L G D
Sbjct: 326 HSLVERILLEGIDSAGIQRELKKALKQEIEKFKKVDIEKKKLRVLVNNSRRLFGVCDPFQ 385
Query: 748 ILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVY 807
IL G+VFVRVTM +I VL+ +NPC+HPGD L AV
Sbjct: 386 ILREGEVFVRVTMPHA--------------GPRTIHSCSVLIFRNPCMHPGDCLKLRAV- 430
Query: 808 EMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCET-----EPPMD 862
K E + VDC++F KG P+ SGGDLD + I WD DLIP PP+
Sbjct: 431 -DKPELRHLVDCVVFASKGRHAAPSLSSGGDLDE--YTIIWDKDLIPSRVFEHYLYPPVK 487
Query: 863 YTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATL 922
+ +T ++ F +Y + ++G + + P+ A+S +C L L
Sbjct: 488 EKKKSV------ITRRDLAAHFANYN-SISMGTTARLYWQWVRFHPEGAKSQECQDLNAL 540
Query: 923 HSMAVDFAKTGAPAEM 938
+S VD P +
Sbjct: 541 YSQCVDGGSIKIPERL 556
>gi|34447177|dbj|BAC84970.1| RNA-directed RNA Polymerase [Vigna unguiculata]
Length = 257
Score = 192 bits (488), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 109/253 (43%), Positives = 150/253 (59%), Gaps = 13/253 (5%)
Query: 880 IHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMP 939
+ ++F +Y++ND+LG I+ AH V AD P KA S +CL LA L S AVDF KTG PA +P
Sbjct: 1 VEEYFTNYIVNDSLGIIANAHTVFADNQPRKAMSEECLKLAKLFSTAVDFPKTGVPAVIP 60
Query: 940 LALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDS--IMQIRSNAIWSEKIAEASYDHD 997
L KE+PDFME+ DK YIS V+GKLYR +++ S + ++ ++A SYD D
Sbjct: 61 RVLYVKEYPDFMEKSDKETYISPNVIGKLYREVIEAISSSDGGSISSFTREVARTSYDFD 120
Query: 998 LEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGD 1057
+EVDGF ++ A HK Y+ ++ LM+YYG TE EIL+GN+ + + RR +
Sbjct: 121 MEVDGFLDYVDDAFYHKTNYDYKLGNLMDYYGIKTEAEILSGNIIKLSKCFNK--RRDAE 178
Query: 1058 MKDRILLSAKNLQNEAKEWFGSSCKENEHPQLASAWYHVTYSPSY--CKE----RMALLS 1111
++ + S L+ +A+ WF ++ ASAWYHVTY PSY C R LS
Sbjct: 179 AINKAVTS---LRKDARSWFNEGNNGDDEYAKASAWYHVTYHPSYWGCYNQGMGRDHYLS 235
Query: 1112 FPWIVGDILLNIK 1124
FPW V LL IK
Sbjct: 236 FPWCVFPQLLQIK 248
>gi|330794390|ref|XP_003285262.1| hypothetical protein DICPUDRAFT_149105 [Dictyostelium purpureum]
gi|325084804|gb|EGC38224.1| hypothetical protein DICPUDRAFT_149105 [Dictyostelium purpureum]
Length = 2292
Score = 192 bits (487), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 178/683 (26%), Positives = 299/683 (43%), Gaps = 87/683 (12%)
Query: 392 ALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFS 451
VTP +I + P L + N V+++F S F+ F +E++ P L+ S
Sbjct: 1083 VFVTPTRIVLVPPRLTSGNRVIRSFGNDPSRFLLYNFTDENFE--PFLGLNKS------- 1133
Query: 452 KPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMG 511
P S+ L + I + ++Y ++ S SQ + S W + + + ED W G
Sbjct: 1134 HPLILDGQSKHLKNGLEIIPLSGEYYRYIGNSQSQSKKYSAWFYLEDPKYKIEDAFKWSG 1193
Query: 512 CFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLS 571
I + K + LFSS+ +++V+ + I DV ++ + F++G G I
Sbjct: 1194 IDTSI-PMRKVYRQFCLLFSSTSKSIVIDKSKYKTIDDVYDSTGAHN--FTEGCGIIGKY 1250
Query: 572 FARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSFRKLS-------------LRRSMLK 618
+ +K A+QIR GG KGV+ ++ L +R SM K
Sbjct: 1251 LVDAINKKMNYHPCTCAYQIRIGGSKGVVVLNDTDSISLGNGKSIPMDPTCIYIRESMTK 1310
Query: 619 F------ESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKML 672
F + +R L + S + C LNR+ I+LL G ++ + + L + L
Sbjct: 1311 FMKDPSDDETHRTLEIISVSTTSRCKLNRQAINLLLNAGTEESSILSFLDKSLNENAQTL 1370
Query: 673 INREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIY 732
++ + D+L + NI L Y Y+ ++L H + +L ++ +C I
Sbjct: 1371 VDIGLSKDLLNEF----YPNISEYELFNDY------YIRTIVLKHFKTKLLRIQDKCHIE 1420
Query: 733 VPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVK-----GKV 787
V R ++G D +G L QV++ V DD +I++ G+V
Sbjct: 1421 VEDSRNVLGVTDFSGKLGPNQVYLEVA---------------DFDDNNNIIRSKVITGRV 1465
Query: 788 LVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFIS 847
V KNPC HPGD+R+LEAV L K + + F GE P+ ECSG DLDGD +FI
Sbjct: 1466 AVLKNPCHHPGDIRILEAVDIPLLHGKR--NILFFSINGEVPNFKECSGSDLDGDRYFIV 1523
Query: 848 WDNDLIPCETEPPMDYTGRR--SRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHAD 905
+DN LI + + Y G + + L +++ F +D LG +S HL+ +D
Sbjct: 1524 YDNVLINDKMKNSDPYLGESVAATVGGEGEGLHDVYLFNID---KTNLGKLSNKHLIISD 1580
Query: 906 RDPDKARSSKCLHLATLHSMAVDFAKTGA----PAEMPLALKPKEFPDFMERE---DKPR 958
+ S + LA ++ VD KT PA A+ P FM
Sbjct: 1581 L--EGVDSEIAIDLAIQCAIEVDSVKTNKHGVLPANAKAAMNKCGIPHFMASTTLGTTNI 1638
Query: 959 YISFGVLGKLYRATLDSIMQIRSNAIW-SEKIAEASYDHDLEVDGFEAFLGVAE-SHKEM 1016
Y S V+G++Y + S +W + + E D ++ VDG++ ++ +
Sbjct: 1639 YHSDKVIGQIYDSA--------SRLMWFGDFLPEIKVDENMLVDGYKNYIDQKNLITYRL 1690
Query: 1017 YEEEMNALMNYYGASTEDEILTG 1039
Y+ +N L+ YG+++E+++L G
Sbjct: 1691 YKTRINNLLRIYGSNSEEDLLLG 1713
>gi|116195262|ref|XP_001223443.1| hypothetical protein CHGG_04229 [Chaetomium globosum CBS 148.51]
gi|88180142|gb|EAQ87610.1| hypothetical protein CHGG_04229 [Chaetomium globosum CBS 148.51]
Length = 1676
Score = 191 bits (486), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 138/425 (32%), Positives = 217/425 (51%), Gaps = 47/425 (11%)
Query: 544 VEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGL-----SHTPSAFQIRYGGYKG 598
VE IPD+E T+D Y F+DG G ++ A+++A++ G+ +TPS QIRY GYKG
Sbjct: 162 VEDIPDIE-TAD---YIFTDGCGLVAPKLAQELARRVGIVFRDRRYTPSVLQIRYRGYKG 217
Query: 599 VIAVDRNSFRK----LSLRRSMLKFES-RNRMLNVTKWSESMP-CFLNREIISLLSTLGV 652
V+ VD L +R+SM KF + +V + S+ +LN E+I LL LGV
Sbjct: 218 VVTVDPTMAADKKYLLRMRKSMKKFSGGDDHSFSVVEHSKPYTYGYLNDEVIILLDALGV 277
Query: 653 KDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSM 712
V + Q++ L + +A L +N + ++L+ E +V P +
Sbjct: 278 DRAVIKRKQEEHFRFLADATQDPRSAFRFLCYVN---MPQLAERVLMDSLE-SVRPRIQA 333
Query: 713 MLLSHHENQLSDL-KSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQS 771
++ + + L+ + +CRI +PK RLL G D G+L G+ V++TM
Sbjct: 334 LVKNEYAKMLNKRDEQKCRILLPKSRLLFGVCDAWGVLKEGECAVKITMDG--------- 384
Query: 772 FFHRVDDKTSIVKG-KVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPH 830
D + + +KG VLVT+NPCLHPGD++ + V + +L VDCI+F +G RP
Sbjct: 385 -----DGQPAALKGCDVLVTRNPCLHPGDMQKFKVVEKRELAH--LVDCIVFSSQGRRPA 437
Query: 831 PNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMIN 890
+ SGGDLDGD FF+ WD+D++P P Y G + R+ +T ++ ++F Y N
Sbjct: 438 ADLMSGGDLDGDTFFVCWDSDIVPATLSQPAQYPGAKERLRFEPITDDDRLEYFARYN-N 496
Query: 891 DTLGAISTAHLVHADRDPDKARSS---KCLHLATLHSMAVDFAKTGAPAEMPLALKP-KE 946
+LG + +L D +AR + +C L L S VD P ++ A P ++
Sbjct: 497 ASLGRVKNLYL-----DWARARGAMAEQCQELNRLFSQCVDGNFIRIPQKLEKAPPPSQD 551
Query: 947 FPDFM 951
P F+
Sbjct: 552 APPFI 556
>gi|443895352|dbj|GAC72698.1| RNA-directed RNA polymerase QDE-1 [Pseudozyma antarctica T-34]
Length = 1496
Score = 190 bits (482), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 183/618 (29%), Positives = 290/618 (46%), Gaps = 65/618 (10%)
Query: 394 VTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKP 453
VTP ++ GP SN V++ ++ + F RVTF ED +T+I+
Sbjct: 391 VTPTRVLLSGPHTHVSNRVIRAYSDHWHHFARVTFSNED------RGGATTIKANYGFVE 444
Query: 454 YRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWM---FASND--EVSAEDVRG 508
I SR+L ILQ GI + +H+E LA+S+S + ++VW F D V AE +R
Sbjct: 445 SERYIQSRVLKILQRGINVAGRHWEMLAWSSSSMSAHTVWFVTPFRDKDGTHVHAEVIRR 504
Query: 509 WMGCFNKI-RSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGK 567
+G F + R + AR+ Q FS++ +T+ V + +PD+E T D ++DG+G+
Sbjct: 505 ELGDFTDVARYPAMYGARLSQAFSATARTVEVDSSLILHMPDIE-TPD-RKMAYTDGVGQ 562
Query: 568 ISLSFARQVAQKCGLSH-------------TPSAFQIRYGGYKGVIAVD-RNSFRKLSLR 613
IS +V +K S PSA QIR GG+KG + V+ R ++L+LR
Sbjct: 563 ISPELMAEVWEKYVTSALGEPRKRKFFKAAAPSAIQIRIGGHKGCLTVNPRLQGKQLALR 622
Query: 614 RSMLKFESRNRMLNVTKWS-ESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKML 672
SM KF S ++ L V S + LNR +I+ L GV +Q++ + +G+
Sbjct: 623 PSMSKFVSPHQDLEVANSSARCLSAKLNRPLINALDDRGVPATALLDIQKEAIAHIGRAR 682
Query: 673 INREAALDVLQKLN---GVDSKNILVKMLLQGYEP---NVEPYLSMMLLSHHENQLSDLK 726
+ + + + G D + K+ G + + + ++ + L D+K
Sbjct: 683 THFDETAKLCSAYSFGTGCDLHILFQKLHKHGMGATSIHSDSFFLVLAKAVIAAALGDMK 742
Query: 727 SRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGK 786
+ RI V +G LIG DE L G+VF +V E D R ++ G
Sbjct: 743 RKARIPV-RGVTLIGVADEFAFLKEGEVFAQV-------EHVDLGQVRR-----RVLVGT 789
Query: 787 VLVTKNPCLHPGDVRVLEAVYEMK----LEEKDYVDCIIFPQKGERPHPNECSGGDLDGD 842
L+ ++P + PGD+ +++ V L+ ++ V + + P P GGDLDGD
Sbjct: 790 KLIGRSPTVDPGDIAMVKCVRPPPGHPLLQLRNVV--VFNTCTRQEPLPRRLGGGDLDGD 847
Query: 843 IFFISWDNDLIPCETEPPMDYTGR-RSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHL 901
++ I D L +P + + R +D ++ FF D+M+ND +G +S HL
Sbjct: 848 LYTIYEDERLFLPTPQPGTTFHAKTRPMELDRYCNSTDLANFFADFMLNDFIGLVSHMHL 907
Query: 902 VHADRDPDKARSSKCLHLATLHSMAVDFAKTGAP---AEMPLALKPKEFPDFMEREDKPR 958
AD + +C LA LHS+A DF KTG ++P +P PDF+ + +PR
Sbjct: 908 RIADASKAGSLDGRCKQLAMLHSLATDFRKTGVAVKRTQLPRMDEPI-IPDFLA-QGEPR 965
Query: 959 -----YISFGVLGKLYRA 971
Y S VLG LYRA
Sbjct: 966 QGGLTYPSTRVLGYLYRA 983
>gi|392564352|gb|EIW57530.1| RdRP-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 1232
Score = 189 bits (481), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 171/642 (26%), Positives = 293/642 (45%), Gaps = 91/642 (14%)
Query: 385 NVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWS--KLPANALS 442
+ C+ +VTP +I GP SN VV+ + Y +F+RV F +E+ + P S
Sbjct: 417 GTLKCFHVIVTPTRILLEGPYDTQSNRVVRKYHDYRENFVRVEFRDENRMAFRWPKEVNS 476
Query: 443 TSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWM---FASND 499
S+ I R TIL++G+ I + + FL +S S LR ++ W F D
Sbjct: 477 ASL------------IEERFGTILKEGLEIAGRRFRFLGYSNSGLREHTTWFMSDFEHPD 524
Query: 500 E--VSAEDVRGWMGCFNKIRSV-SKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDG 556
E ++ + +R +G F+ + ++ SK AAR+ Q FS + ++ + + D
Sbjct: 525 EGLLTPDRIRDSLGNFSNVNTIPSKYAARIAQAFSGTDPSVRIRRDQWD---DQLADLGK 581
Query: 557 NTYCFSDGIGKISLSFARQV--------AQKCGLSHTPSAFQIRYGGYKGVIAVDRN-SF 607
+ +DG G IS+ ++ K L+ PSA+QIR+ G+KG++ VD
Sbjct: 582 KPFWHTDGQGTISVGLRDEIWDVLVKAQPDKAKLTLKPSAYQIRFLGFKGIVVVDETLEG 641
Query: 608 RKLSLRRSMLKFESR-----NRMLNVTK-WSESMPCFLNREIISLLSTLGVKDEVFEAMQ 661
+ LR +M KF++ + + + K + L R +I +L LGV+ E +Q
Sbjct: 642 VYMRLRPTMNKFKAHADDEADAEIEIAKAFIYPGTARLCRPLIMVLEDLGVRKEAMLELQ 701
Query: 662 QQQLILLGKMLINREAALDVLQKLNGVDS---KNILVKMLLQGY-------EPNV--EPY 709
++ + +++L+K DS ++IL + G P+V +
Sbjct: 702 NLAKAVVVTASDSMGETINLLRKHALGDSFGLRHILEHLRRAGMCMRREAGSPDVMDNDF 761
Query: 710 LSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKD 769
+ ++ + L ++K RI +P L+G DE G + M REE + K+
Sbjct: 762 ILQLVKYAQHHILHEIKHDARIPIPNAHQLVGVADE------GPAY----MQREEYKDKE 811
Query: 770 ------QSFFHRVDDKTS----IVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEE----KD 815
F V+ VKG+V ++++P +HPGDV+ + A+ + ++ ++
Sbjct: 812 VFCLGMGEIFACVEQPDGGEPLYVKGQVTISRSPHIHPGDVQRVRAIGKPPDDKLCLFRN 871
Query: 816 YVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDV 875
+ ++ P GER + +GGD+DGD F + D L+P P Y R +
Sbjct: 872 LRNVVVLPSVGERSLASCLAGGDVDGDEFLVIKDPTLLPTTNADPASYDAGDPRDIGRPS 931
Query: 876 TLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAP 935
T+++I F ++YM +D +G ++ HL AD C+ LA L S AVD+ K G P
Sbjct: 932 TIDDICNFLLEYMQSDVMGLVADQHLKIAD----------CMVLARLCSQAVDYPKNGVP 981
Query: 936 AEMPLALKP--KEFPDFMEREDK-PR----YISFGVLGKLYR 970
+ +P + PD+ + ED PR Y S LG L+R
Sbjct: 982 VNLESMPEPLIRAKPDWKKSEDNDPRPSDYYESTRALGALFR 1023
>gi|403417878|emb|CCM04578.1| predicted protein [Fibroporia radiculosa]
Length = 1258
Score = 189 bits (480), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 208/745 (27%), Positives = 329/745 (44%), Gaps = 95/745 (12%)
Query: 298 FNLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDP-V 356
F+ FQL +L++N ++ A L + L E A + L K P +
Sbjct: 355 FDRDWPFAFQLTALLYNGSLNTEELSA-LRPDIEKLHREQASIAASVLQDFKGAPVSPNI 413
Query: 357 SFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNF 416
+ L R +S ++ D N+ +C+ TP ++ GP SN VV+ +
Sbjct: 414 RTIVDHRRYLARIIGERTMSLGQQRSDKNIFTCHHVTFTPTRMILEGPSRLQSNSVVREY 473
Query: 417 AKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKH 476
+ F+RV FV+E+ S L + F + R+ TIL+ G I +
Sbjct: 474 WENRDRFIRVDFVDENRSHF---RLDQEVDGASF-------LQDRVGTILKGGFQIASRV 523
Query: 477 YEFLAFSASQLRNNSVWMFASNDEVS-------------AEDVRGWMGCFNKIRSVSKCA 523
+E L +S S L ++ W + VS AE++R +G ++I +K A
Sbjct: 524 FELLGYSNSSLGDHVFWFVNPFERVSRNANGQEVREFITAEEIRRRLGDLSEIALPAKYA 583
Query: 524 ARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQV------- 576
AR+GQ F+S+ ++ V + E I ++ D N DG+G+IS A +
Sbjct: 584 ARIGQAFTSTYFSVQVVEDEWEEIEEILEDRD-NPKSHVDGLGRISQDLANAIWEGMCEE 642
Query: 577 -AQKCGLSHTPSAFQIRYGGYKGVIAVDRN-SFRKLSLRRSMLKFESR------------ 622
++ PSAFQIR+ GYKGV+AVDR RKL LR M KF+
Sbjct: 643 EPERRAYGVKPSAFQIRFIGYKGVVAVDRQLKGRKLCLRPEMRKFKPHRCDGCRAKLFCA 702
Query: 623 --NRMLNVTKWSESM----PCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINRE 676
N + +E+ +L R+ +++L V+DEVFE +Q + + E
Sbjct: 703 HLNNPIQSLHIAEAFHGPRRAYLTRDPVTILEDREVRDEVFENLQDEAKRTTYMARDSSE 762
Query: 677 AALDVLQKLN-GVDSK-NILVKMLL--------QGYEPNV--EPYLSMMLLSHHENQLSD 724
L++LQ + G + L++ LL Q NV +P+ + ++ L D
Sbjct: 763 KYLELLQSHHLGFQYRLPFLLQRLLDIGLDCGSQILAENVLNDPFFLGLREYGIQHVLRD 822
Query: 725 LKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRV----DDKT 780
LK+R RI VP LL+G DE G + + + +L K+ F V D K
Sbjct: 823 LKTRARIPVPNSYLLVGVADE------GPAYTKQGHSVYQL--KNGQIFACVQESPDAKP 874
Query: 781 SIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYV------DCIIFPQKGERPHPNEC 834
+KG +T++P +HPGDV+ + A+ + + + + ++ P G R +
Sbjct: 875 IWLKGLCFITRSPTVHPGDVQRVTAIGKPDVPDGQICLFEHMKNVVVLPTVGCRSLASCL 934
Query: 835 SGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLG 894
GGDLDGD++++ + L+P PP Y + T +++ F V+YM +D LG
Sbjct: 935 GGGDLDGDLYYVFHYSQLLPVLHVPPAAYPDEKP--PPRQFTFDDVCDFIVEYMHSDVLG 992
Query: 895 AISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAE---MPLALKPKEFPDFM 951
+S LV AD+ + + +C+ LA L S AVD+ KTG P L P PD+
Sbjct: 993 LLSVRRLVIADQSQEGSLDKRCIELARLCSDAVDYPKTGRAVNSRTAPKKLLPYS-PDWH 1051
Query: 952 EREDKPR------YISFGVLGKLYR 970
ED Y S LGKLYR
Sbjct: 1052 ADEDNISDPLADCYQSDRALGKLYR 1076
>gi|390597813|gb|EIN07212.1| RdRP-domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 1217
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 167/611 (27%), Positives = 277/611 (45%), Gaps = 90/611 (14%)
Query: 385 NVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTS 444
+ SCY P ++ GP N V++ ++ Y F+RV F EED L
Sbjct: 402 GMFSCYHITFCPSRMILEGPFPTQGNRVIREYSGYEEHFVRVDFREED-------GLQYR 454
Query: 445 IQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWM---FASNDE- 500
R + + + + R+ IL++G + +H++FLA+S+S L+ ++VW F +++
Sbjct: 455 WDREVDCRSF---LAERVGRILKEGFELAGRHFQFLAYSSSALKQHAVWFVHPFEHHEKG 511
Query: 501 -VSAEDVRGWMGCF-------NKIRSV---------SKCAARMGQLFSSSKQTLVVPVQD 543
V A +R +G F N+ R SK AARM Q F+++ ++ +
Sbjct: 512 SVDAYIIRDRLGDFSGAIDNNNETRDAKTIQLRMQPSKYAARMAQAFTATDPSVRINEDQ 571
Query: 544 VEMIPDVEVTSDGNTYCFSDGIGKISLSFA----------RQVAQKCGLSHTPSAFQIRY 593
+ IPD+ + +DG G IS A R Q C S P +QIR+
Sbjct: 572 WQEIPDL----GKEPHLHTDGCGTISRKLADMIWAALCKDRPYFQACKSS--PDCYQIRF 625
Query: 594 GGYKGVIAVDRN-SFRKLSLRRSMLKFESR---NRMLNVTK--WSESMPCFLNREIISLL 647
GYKG++ VD ++ LR SM KF + + + + K W + LNR +I +L
Sbjct: 626 LGYKGIVTVDETLEGEQMCLRPSMNKFRAHKTPSAEIEIAKPFWKPTQ-VNLNRALIMIL 684
Query: 648 STLGVKDEVFEAMQQQQLILLG----------KMLINREAALD----VLQKLNGVDSKNI 693
GV + F +Q + + + +ML +R A L +L + +
Sbjct: 685 EDRGVSWKCFMKLQDEAVRDINTASFSIDNFVRMLSDRGAGLGSNYRLLYIMRNLAELGF 744
Query: 694 LVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGIL---N 750
K L+ +P P++ ++ + L ++K I + LL G DE
Sbjct: 745 DFKQRLR-VQPLSHPFILRLVEFIRHHLLREIKHGASIPLRDAYLLPGVADEGPAYEARG 803
Query: 751 YGQVFVRVTMTREELESKDQSFFHRVDD-KTSIVKGKVLVTKNPCLHPGDVRVLEAVYEM 809
+ VF + E++ + DD + +KG ++ ++P +HPGD+ + VY +
Sbjct: 804 HQNVF-------KLAENRIFACVQGPDDVEPKWLKGNCVIWRSPVVHPGDI---QRVYAI 853
Query: 810 KLEEKDYV-------DCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMD 862
+D + + ++ P GER + GGDLDGD + +S L+P E +PP +
Sbjct: 854 GKPPEDQLCFFSRLKNVVVLPSVGERSLASCLGGGDLDGDEYCVSMLPTLLPTEQQPPAE 913
Query: 863 YTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATL 922
Y + +D +++I F V+Y+ +D LG +S HLV AD+ D R KCL LA L
Sbjct: 914 YPPVETLTLDRPAEIDDICDFIVEYVHSDVLGLLSDKHLVIADQSKDGVRDEKCLRLAEL 973
Query: 923 HSMAVDFAKTG 933
S AVD+AK G
Sbjct: 974 CSQAVDYAKNG 984
>gi|347841951|emb|CCD56523.1| hypothetical protein [Botryotinia fuckeliana]
Length = 717
Score = 185 bits (469), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 143/470 (30%), Positives = 221/470 (47%), Gaps = 58/470 (12%)
Query: 224 DFDFFWVRTTDFSVTKS-----IGCSTSFFWEIKNGLLASD----------------IS- 261
+FD F + + ++ K IG T++ W NG D IS
Sbjct: 262 EFDPFIIESQPVALHKKRPVIDIGRWTTYRWTFNNGQCPPDKFQMVQAALQDFNIDMISL 321
Query: 262 ---NIFPFYKEDKTDLILEEGEEFCTTSEIVPLVKCRPGFNLSHEVLFQLNSLVHNQKVS 318
N+ P K + LI + E T + + L NL EV +QL + + V+
Sbjct: 322 NSFNLMPMRKAELWSLI-DPCEAKTTQAGLRSLDPSSVKVNLPFEVRYQLEVCISREIVN 380
Query: 319 LVAADAELIQILSGLSMETALMVLQKL-----HKLKSICYDPVSFVKTQLHVLGRNCKSI 373
D + I L+ LS + L H YDP S N +++
Sbjct: 381 EYNIDEKFINSLAELSAQDPAKARNLLEYVAEHYSSKRLYDPSSIFT--------NSEAL 432
Query: 374 PLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASD--FMRVTFVEE 431
S+ I H +A VTP I P +ET+N V+++++K + F+RV F +E
Sbjct: 433 SFSALTD-IPHYCAFSRKATVTPTSILFNSPTVETTNRVLRHYSKENQEGRFLRVQFTDE 491
Query: 432 DWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNS 491
+ N+ + I+ I++R+ ++ +GI IGD+HYEFLAF SQ R N
Sbjct: 492 KFEGR-INSCADKIRND--------AIFTRVFRVISNGIRIGDRHYEFLAFGNSQFRENG 542
Query: 492 VWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVE 551
+ F + +S D+R WMG F+ I V+K AAR+GQ FS+++ + D+ IPD+
Sbjct: 543 AYFFCPSANLSCNDIRQWMGTFSHINVVAKYAARLGQCFSTTRAIKGLSAPDIVKIPDI- 601
Query: 552 VTSDGNTYCFSDGIGKISLSFARQVAQ--KCGLSHTPSAFQIRYGGYKGVIAVDRNSF-R 608
YCF+DG+GKIS A+ +A K + PSAFQ R GG KG++ V ++
Sbjct: 602 ---GRGRYCFTDGVGKISPYLAQMIASELKLRVDLAPSAFQFRLGGCKGILVVSPDAKDN 658
Query: 609 KLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFE 658
++ +R+S KF + L + + S+ LNR+ I++LS LGVKDE E
Sbjct: 659 EVHIRKSQQKFTAAYNGLEIIRCSQFSSATLNRQTITILSALGVKDECNE 708
>gi|403377070|gb|EJY88529.1| Suppressor of ascus dominance [Oxytricha trifallax]
Length = 1160
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 175/660 (26%), Positives = 290/660 (43%), Gaps = 99/660 (15%)
Query: 383 DHNVMSCYRALVTP-MKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANAL 441
D + Y +TP IY L + + SN +++ Y F++V F +D A +
Sbjct: 313 DDGKIEAYSLTITPTFNIYNLNSQ-QLSNVILRQNQNYHDKFLKVDFKGDDLE--DAGQI 369
Query: 442 STSIQRGIFSKPYRTK--IYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASND 499
S KP + K + + + + +GI I +Y+FL S S L+ +++WM ++
Sbjct: 370 LQSKYGFKQGKPIKHKNSLSNYVWKPISEGINILHMNYQFLGNSNSSLKQHTIWMLNTSQ 429
Query: 500 EVSAED--VRGWMG---------CFNKIRSVSKCA-------------ARMGQLFSSSKQ 535
D VR + G F + V K AR QLFS ++
Sbjct: 430 FEDKCDNVVRLYNGMELLQQIQESFGHLPKVVKSENKELNKGITLHTLARAAQLFSGTRH 489
Query: 536 TLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGG 595
+ +E IPD+ +G FSDG G IS A ++ L SA+Q R GG
Sbjct: 490 ICELRADQIEYIPDI--IKNGKN--FSDGNGCISQELANKINAIYNLQDC-SAYQFRLGG 544
Query: 596 YKGVIAVDRN-SFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKD 654
KG + V++ K+ +R+SM KFE+ + LN+ + + F NR++ISL+ G+
Sbjct: 545 CKGTLVVNQELQGEKIQIRKSMKKFENSDTSLNIARCATPSQGFFNRQLISLIENQGIIF 604
Query: 655 EVFEAM---------------------------QQQQLILLGKMLINREAALDVLQKLNG 687
E E + QQQ + ML N + +N
Sbjct: 605 EDIEQILESSDQLKFINQINSFENTIKDEDLIFSQQQAKISNLMLTNTQKEF-----INY 659
Query: 688 V-DSKNILVKMLLQG-YEPNVEPYLSMM--LLSHHENQLSDLKSRCRIYVPKGRLLIGCF 743
+ +S + K ++ + +P++ + LLSH S +K++ RI + +LIG
Sbjct: 660 ISESGQQMFKTFVEKRMDVQSDPFIKNLSKLLSHQIT--SQIKNKGRIPIKDSAILIGVA 717
Query: 744 DETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVL 803
D +L G++F++V ESKD ++ G V++T++PCLHP DV +
Sbjct: 718 DYLQVLQPGEIFLQVQDPDINEESKD---------IYEVITGDVIITRSPCLHPNDVMKV 768
Query: 804 EAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMD- 862
+AV + + + V ++F G+ P ++ +GGDLDGD+F I W+ L+ T ++
Sbjct: 769 KAVNCNQYKHLNNV--VVFSANGDEPIQSQLAGGDLDGDVFHIIWNERLVSQFTPQFLEK 826
Query: 863 --YTGRRSRIMDHDVTL--EEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLH 918
+ +R TL +EI + + N+ LG I + HL D+ S L
Sbjct: 827 QKFDSKRIVGYQAKYTLIPQEIADSLLHFFKNNILGKIDSLHLAICDKQS--PNSQHALS 884
Query: 919 LATLHSMAVDFAKTGAPAEMP-------LALKPKEFPDFMEREDKPRYISFGVLGKLYRA 971
LH AVDF K G ++ L + FPD+M+ + + Y S ++G +YRA
Sbjct: 885 TEFLHQQAVDFQKHGCKPDIEEYHEIRNEGLDNQMFPDYMQSKSQDSYASQKIMGTIYRA 944
>gi|119370384|gb|ABL68089.1| putative RNA-directed RNA polymerase 2 [Nicotiana attenuata]
Length = 108
Score = 184 bits (467), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 88/108 (81%), Positives = 98/108 (90%)
Query: 523 AARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGL 582
AARMGQLFS+S QT+ V VE++PD+EVTSDG +YCFSDGIGKIS +FA QVAQKCGL
Sbjct: 1 AARMGQLFSTSFQTMEVQSPHVEILPDIEVTSDGVSYCFSDGIGKISQAFASQVAQKCGL 60
Query: 583 SHTPSAFQIRYGGYKGVIAVDRNSFRKLSLRRSMLKFESRNRMLNVTK 630
S+TPSAFQIRYGGYKGVIAVDRNSFRKLSLR SMLKFES+NRMLN+TK
Sbjct: 61 SYTPSAFQIRYGGYKGVIAVDRNSFRKLSLRGSMLKFESKNRMLNITK 108
>gi|125590670|gb|EAZ31020.1| hypothetical protein OsJ_15103 [Oryza sativa Japonica Group]
Length = 352
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 114/361 (31%), Positives = 185/361 (51%), Gaps = 23/361 (6%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFAL-EIITDRSNWKSRGIGRVQFTSLDFKSK 63
++ VSNIP +A+A +LL F +S + EI W SRG G VQ S +
Sbjct: 11 SLRVSNIPPSAVAAELLAFFDSAVAVAGGAFACEIAAAHRGWLSRGHGTVQLGSAAAAAA 70
Query: 64 AQNLSLNDKLV-FNSQNLKISETHSDIVPRPVKAQHRVEDGVLHVGVMCKEERLRVLQTF 122
A L+ + +L F L +S + D++PR R L VG E +
Sbjct: 71 AAGLASSGRLPRFLGALLSVSPSPVDLLPRASDLSLRAAGAGLVVGDRVAERVFEAADAW 130
Query: 123 EGVRGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFSLD 182
+GVR ++P +RR++ ++ +H+ + +K+E+LFED+ + +G +LD
Sbjct: 131 DGVRAEVIPGKRRVDLYL--EHDSQR---------------YKLEVLFEDMKDCLGCTLD 173
Query: 183 EGATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKSIG 242
+ IL +L Y P+I+ +SGP V S+F DR+H CKED F WVR DF+ S G
Sbjct: 174 ---GMGAILLQLNYAPRIHTAISGPAVNSRFMDDRFHACKEDAKFSWVRALDFTPNYSFG 230
Query: 243 CSTSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTTSEIVPLVKCRPGFNLSH 302
++ ++ L SDI PF + +L + + +S +VPLV C +++ +
Sbjct: 231 RCSTLVLKLGKSALVSDILKSLPF-SGNLGELTMNSMDGVGASSNVVPLVHCPRDYSVPY 289
Query: 303 EVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSFVKTQ 362
EVLF+LNSL+H K+ +A+L + L L ++ + + +K+HKL+S CY P+ +
Sbjct: 290 EVLFRLNSLMHMGKIVAKHVNADLFKALQELPVDVSRRIFEKMHKLESTCYGPLQLSNRR 349
Query: 363 L 363
L
Sbjct: 350 L 350
>gi|241633128|ref|XP_002410399.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
gi|215503416|gb|EEC12910.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
Length = 756
Score = 179 bits (455), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 117/353 (33%), Positives = 194/353 (54%), Gaps = 22/353 (6%)
Query: 391 RALVTPMKIYCLGPELETSNYVVKNF-AKYASDFMRVTFVEEDWSKLPANALSTSIQRGI 449
R VTP ++ L P + + N V++ F A+YA +RV+F +++ L + +
Sbjct: 416 RVFVTPSCVFFLPPNVHSENRVLRCFDAEYA---LRVSFRDDNLQHLSHSLM-------- 464
Query: 450 FSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDE-VSAEDVRG 508
F + + + + L+ GI +G + ++FLA S SQLR++ VW++A + + +AE +R
Sbjct: 465 FHRQKEEMVDTIVAKFLRTGIEVGGRQFKFLASSCSQLRDHGVWLYAMDRQGFTAESIRR 524
Query: 509 WMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQ--DVEMIPDVEV---TSDGNTYCFSD 563
WMG F+ I +V+K ARMGQ FSS+++++ VP+ ++E +PDV G + FSD
Sbjct: 525 WMGDFSAIPNVAKKMARMGQCFSSTEESVKVPLHGGNMEEVPDVVGGVHPVSGKEFTFSD 584
Query: 564 GIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRN-SFRKLSLRRSMLKFESR 622
GIG IS S ++V +K L+ PSA QIRY GYKG++ V+ KL LR SM KF
Sbjct: 585 GIGMISTSLMQKVCKKLDLAEVPSAIQIRYAGYKGMLCVNPELRGDKLVLRDSMRKFSCS 644
Query: 623 NR-MLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDV 681
N L V K S +LNR +I++L LGV VF +QQ+ ++ L+ AL V
Sbjct: 645 NSDSLEVIKVSAPRTVYLNRFLITILEQLGVPSRVFLCLQQKMMLTFADALVCESTALRV 704
Query: 682 LQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVP 734
L V +++ G+ +P++ ++L + + + + + R +++ P
Sbjct: 705 L--CTYVGGTLPFLRLQQNGFCLARDPFVRLLLYTVYRSTMGKRRCRPQLFWP 755
>gi|392569009|gb|EIW62183.1| RdRP-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 793
Score = 179 bits (455), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 140/497 (28%), Positives = 233/497 (46%), Gaps = 54/497 (10%)
Query: 466 LQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKI---RSVSKC 522
+++G+ I Y FL F+ SQ++ + F + E + G + + K
Sbjct: 65 VREGVEINGVRYRFLGFTESQVKAGKLMFFREGHGWTVERLLASFGDLSAVYLKSGYGKY 124
Query: 523 AARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGL 582
+AR+G FSS+ ++L VP + +PD++ DG+ Y +DG G I SFA+++ K
Sbjct: 125 SARLGLSFSSTVESLDVPREAAHEMPDLKAP-DGSLY--TDGCGMIRDSFAKKLCTKHNF 181
Query: 583 SHTPSAFQIRYGGYKGVI-----------AVDRNSFRKLSLRRSMLKFESRNRMLNVTKW 631
S FQ+R GG KG++ +S ++ R SM K+E ML +
Sbjct: 182 PPDTSVFQVRRGGIKGLLVRYPDEKFERLGGTSSSSHLIAYRPSMYKYEDGPTMLEINNH 241
Query: 632 S-ESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQ-KLN-GV 688
+ P LN + LL +LGV +VF+ + Q Q+ ++G ++ +RE AL ++ +L+ GV
Sbjct: 242 NLPPAPAHLNVQFTVLLLSLGVPVDVFKRLLQDQVDIIGSIVTDREKALHYIKGELDAGV 301
Query: 689 DS--KNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDET 746
+ L MLL ++ + EPY+ LL + E Q L+ + + + + G DE
Sbjct: 302 EDGLNQSLYAMLLAQHDLS-EPYVRQRLLKYQEVQYESLRRKMNLRIMDSCYVFGVVDED 360
Query: 747 GILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAV 806
+L G+V+V + ++ I+ V+V +NP HPGD+R L AV
Sbjct: 361 SVLAPGEVYVNLPA------------------RSGILVRDVVVARNPSYHPGDIRKLRAV 402
Query: 807 YEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGR 866
+L + + +CI+FP+KG R P+ S GDLDGD++F++W+ LIP P++
Sbjct: 403 DRPQL--RHHRNCIVFPRKGPRSVPDTISSGDLDGDMYFVAWEPTLIPSTEMKPVNRALS 460
Query: 867 RSRIMDHDVTLEEIHKF----------FVDYMINDTLGAISTAHLVHADRDPDKARSSKC 916
S H T + F+ + LG ++ D+ D A +
Sbjct: 461 MS-AAGHTATSASGRQLPDMPRAAVETFLQLRYSRLLGRMANEWTKAVDKTVDLANAEFP 519
Query: 917 LHLATLHSMAVDFAKTG 933
L L A+D KTG
Sbjct: 520 RRLVPLIEAALDIMKTG 536
>gi|400596582|gb|EJP64353.1| RNA dependent RNA polymerase [Beauveria bassiana ARSEF 2860]
Length = 590
Score = 179 bits (454), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 121/370 (32%), Positives = 188/370 (50%), Gaps = 29/370 (7%)
Query: 321 AADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSFVKTQLHVLGRNCKSIPLSSHKR 380
A DAE ++ L+ L + A +L+ L + DP+ + + P+ KR
Sbjct: 241 AIDAEFLEKLAALDVPKASQLLEYLVDEEIQLEDPLQLFEDA------RFRYAPI---KR 291
Query: 381 LIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANA 440
I + +A +TP + P +E+SN V++ + F+RV F+ E
Sbjct: 292 KIPYYCSLVLKANITPTSLKLNLPNVESSNRVMRKYNNLHDRFLRVQFLSE--------- 342
Query: 441 LSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDE 500
T R + ++ R+L L GI IG++ YEFLAF SQLR SV F
Sbjct: 343 --TESNRIAKDRYNNDDVWKRLLRALHKGIRIGERTYEFLAFGNSQLREGSVTFFCPTAH 400
Query: 501 VSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYC 560
VS +D+R W+G F+ IR+V+K AR+GQ FS++++ V V + I D+E + C
Sbjct: 401 VSCDDIRKWLGNFDHIRNVAKFGARIGQCFSTTREVRGVRVPTIRHIDDIEAKGE----C 456
Query: 561 FSDGIGKISLSFARQVAQKCGLS--HTPSAFQIRYGGYKGVIAVDRNSFRK---LSLRRS 615
F+DG+G IS A+ V + L PSAFQ R GG KGV+AV + K + LR+S
Sbjct: 457 FTDGVGIISALLAQLVVDELELDIVGNPSAFQFRMGGAKGVLAVWPREYAKHMEVCLRKS 516
Query: 616 MLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINR 675
+KF + L + K +++ LNR+II++L LGV F A+ +Q+ + + +R
Sbjct: 517 QIKFSTEANTLEIIKCAKTSTATLNRQIITILEHLGVPLGAFMALLNKQIQHYEEAMTSR 576
Query: 676 EAALDVLQKL 685
AA+D+L K
Sbjct: 577 VAAIDLLTKF 586
>gi|302690464|ref|XP_003034911.1| hypothetical protein SCHCODRAFT_255915 [Schizophyllum commune H4-8]
gi|300108607|gb|EFJ00009.1| hypothetical protein SCHCODRAFT_255915 [Schizophyllum commune H4-8]
Length = 1237
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 173/686 (25%), Positives = 305/686 (44%), Gaps = 104/686 (15%)
Query: 382 IDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANAL 441
I C + TP + GP SN +++ + Y F+RV F +ED L
Sbjct: 423 ITPGYFQCCHIIFTPTRTVLEGPYPVQSNRIIRRYPGYEHHFIRVEFRDED-------RL 475
Query: 442 STSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFAS--ND 499
+ R + + + R+ IL +G +G + + FLA+S S LR +SVW ++
Sbjct: 476 AYRWDRTVDGSQF---VRERVGGILANGFKLGGRSFVFLAYSTSALREHSVWYLNEFYHE 532
Query: 500 E----VSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSD 555
E ++A+ +R +G F + + AAR+ Q F++++ ++ + + E + D+
Sbjct: 533 ELGYCITADYIRDSIGHFPEDSKLY--AARLAQAFTATEPSVKIRRDEWEEMEDLSPPPP 590
Query: 556 G----NTYCFSDGIGKISLSFARQV-----------------AQKCGLSHTPSAFQIRYG 594
+ Y F+DG+G IS S ++ A +CG + +IR+
Sbjct: 591 PGKRVSPYLFTDGVGTISRSLGDRIWGKLISERGGDLTQAVAAGRCG----SISGRIRFL 646
Query: 595 GYKGVIAVDR-----NSFRKLSLRRSMLKFESRNRMLNVTKWSESMPC----------FL 639
GYKG++AVD N+ + LR SM KF+S+ + W + F
Sbjct: 647 GYKGMVAVDEEMDKDNTGIHMRLRPSMRKFDSKEEDM----WEADIEIARHFAYPNNMFT 702
Query: 640 NREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDS---KNILVK 696
N+ ++++L LGV + FE +QQ + + ++ + +A DVL+ N + +IL
Sbjct: 703 NKALVTVLENLGVGCDQFEKLQQSAVASVERIHDDIDAWRDVLRSNNLCRTFRLAHILDN 762
Query: 697 MLLQGYE-------------PNVE-PYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGC 742
+ G E P + P+ + L D+K R +P L+G
Sbjct: 763 FVAMGLEMKGTPSRPRRAPLPGFDSPFFKKIREVARMAILRDIKHDARFGIPDSYKLVGI 822
Query: 743 FDE-TGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSI-VKGKVLVTKNPCLHPGDV 800
DE + G+ V RE + R + + + ++G +++++P H GDV
Sbjct: 823 ADEGPAYIKAGKENVYCLGDREIY-----ACVQRTEGEDPVWLEGNCIISRSPVTHVGDV 877
Query: 801 RVLEAV----YEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCE 856
+ + A+ +M + ++ P G+R + SGGDLDGD++ I DL+ +
Sbjct: 878 QRVHAIGRPPADMLSSFGKLKNLVVLPSVGDRSLCSMLSGGDLDGDLYDIIMCEDLLYSQ 937
Query: 857 TEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKC 916
E P+D+ + ++ T+++I F V+Y+ +D +G +S LV AD+ + C
Sbjct: 938 QEKPLDFDPGETFQLNRPATVDDICNFIVEYINSDVVGLLSDRLLVIADQSKNGIFDEDC 997
Query: 917 LHLATLHSMAVDFAKTGAPAEMPLALKPKEF----PDFMERE-----DKPRYISFGVLGK 967
+ +A L S AVD+ K G P ++ P+ PD+ E D Y S LG+
Sbjct: 998 VKIAKLCSQAVDYPKQGIPVDLENGNLPRPLMRQKPDWHAAEVIRPRDNDYYRSDKALGR 1057
Query: 968 LYRATLDSIMQIRSNAIWSEKIAEAS 993
LYR +QIR SE+ A ++
Sbjct: 1058 LYRN-----IQIREVEALSEEEAAST 1078
>gi|405952888|gb|EKC20645.1| Putative RNA-dependent RNA polymerase SHL2 [Crassostrea gigas]
Length = 1226
Score = 178 bits (452), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 132/391 (33%), Positives = 209/391 (53%), Gaps = 40/391 (10%)
Query: 299 NLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSF 358
+L +V+ L V NQ L L Q+L+ L A+ V++K P
Sbjct: 858 SLGSKVVDHLTYEVKNQIECLSQKTELLTQLLNNL----AVKVIEK----------PFFN 903
Query: 359 VKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAK 418
K +L +L P++ + H M R ++TP K L E N +++ +
Sbjct: 904 FKDELDLLMAKS---PITVENEVPSHFYM-VGRMILTPTKTVFLPKEPVFQNRILR---E 956
Query: 419 YASDF-MRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHY 477
Y DF +RV + +ED+ K+ N + + + + KI + L +DG I ++HY
Sbjct: 957 YGPDFFIRVVYRDEDFEKM--NTVQSCLLDDVL------KIMKQFL---KDGFRIRNRHY 1005
Query: 478 EFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTL 537
EFL S SQLR +S W F +D++++E +R G F+K R V+ +R G FSS+++T
Sbjct: 1006 EFLGCSNSQLREHSFWFFHPHDDITSESIRNNSGEFSKDRCVASYVSRFGLCFSSTRRT- 1064
Query: 538 VVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYK 597
V V + +I D +V D YCF+DGIG+IS A++VA + +S PSAFQIR+GG K
Sbjct: 1065 -VDVDESCLIYDDDVKKD--EYCFTDGIGRISTKLAKKVAAELHISPIPSAFQIRFGGCK 1121
Query: 598 GVIAVDR---NSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKD 654
GV+A D + L +R+SM+KFES++ L + + LNR++I+LLS LG+ D
Sbjct: 1122 GVVAQDPTLGDDADVLVIRKSMIKFESKSNNLEILGETRPGRLHLNRQVITLLSGLGIPD 1181
Query: 655 EVFEAMQQQQLILLGKMLINREAALDVLQKL 685
EVF +Q++ L+ + ML+ + AL L ++
Sbjct: 1182 EVFLGLQEKMLLDIADMLLYDKVALLALSEM 1212
Score = 131 bits (329), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 104/346 (30%), Positives = 171/346 (49%), Gaps = 64/346 (18%)
Query: 269 EDKTDLILEEGEEFCTTSEIVPLVKCRPGFNLSHEVLFQLNSLVH---NQKVSLVAADAE 325
E K+D++L + E + V + GF ++ + F++ + ++ SL
Sbjct: 276 ELKSDVLLPDNFELTYAWQCVTTI----GFKVTDHLTFEVKKYIEYLFQKETSL------ 325
Query: 326 LIQILSGLSMETALMVLQKLHKLKSICYDPVSFVKTQLHVLGRNCKSIPLSSHKRLI--- 382
+IQ+L L++E L+ Q H K +L ++ KR++
Sbjct: 326 MIQVLYNLAIE--LIEKQFFH------------FKNELDLM-----------KKRILTNF 360
Query: 383 DHNVMSCY----RALVTPMKIYCLGPELETSNYVVKNFAKYASDF-MRVTFVEEDWSKLP 437
DH++ Y R ++TP + L E N +V+ +Y DF +RV F +ED+ K+
Sbjct: 361 DHDLPPHYSRVARMVLTPTRSLFLPKEPMFQNRIVR---EYGEDFFIRVVFRDEDFEKI- 416
Query: 438 ANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFAS 497
+ S +++ I R+ T +DG I + YEFL S SQLR +S W F
Sbjct: 417 STVQSDAVE----------NILERMKTFFEDGFQIQTRDYEFLGCSNSQLREHSFWFFHP 466
Query: 498 NDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGN 557
D++++E++R G + R V+ +R G FSS+K+T+ V V+ DV+ +
Sbjct: 467 RDDITSENIRNSSGELSTERCVASYVSRFGLCFSSTKKTVDVDKGCVQYTDDVQ----ND 522
Query: 558 TYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVD 603
YCF+DGIG+IS A +V+ + +S PSAFQIR+GG KGV+A D
Sbjct: 523 EYCFTDGIGRISTKLAEKVSNELNISPVPSAFQIRFGGCKGVVAQD 568
>gi|400596583|gb|EJP64354.1| RNA dependent RNA polymerase [Beauveria bassiana ARSEF 2860]
Length = 527
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 137/432 (31%), Positives = 211/432 (48%), Gaps = 58/432 (13%)
Query: 725 LKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREE-------LESKDQSFFHRVD 777
+K +CRI + K ++GC DETG L + + + + L+ D+ +
Sbjct: 1 MKEKCRIQIEKSAFVMGCVDETGTLRGHSIQTEGSRGKNKAVLPQIFLQMSDRKY----G 56
Query: 778 DKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGG 837
+KT+I++G + +NP LH GD+RV+EAV L + D ++FP KG+R P+ SGG
Sbjct: 57 NKTTIIQGVCFIGRNPSLHAGDIRVVEAVDTPCL--RHLKDVVVFPSKGDRSLPSILSGG 114
Query: 838 DLDGDIFFISWDNDLIP-CETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAI 896
DLDGD +F+ WD+ L+P PPM T + ++ V ++++ F V YM ND LG +
Sbjct: 115 DLDGDEYFVIWDSTLVPKIWNSPPMHSTPVTPQDLERGVEVDDLRNFAVKYMKNDCLGFV 174
Query: 897 STAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLA-LKPKEFPDFMERED 955
+ AHL HAD CL LA LHS AVD+ KTG PAE A +P ++P FM+R +
Sbjct: 175 AVAHLAHADA--LGLNHPICLQLAKLHSQAVDYLKTGVPAEWNRARYQPSKWPHFMQR-N 231
Query: 956 KPRYISFGVLGKLY-RATLDSIMQIRSNAIWSEKIAEASYDHDL--EVDGFEAFLGVAES 1012
Y S LGKLY R ++ + S E +D + D + L A +
Sbjct: 232 SCTYPSHKALGKLYNRVAEENFDYVPS--------CEDEFDSRITQRFDFTDEILASARN 283
Query: 1013 HKEMYEEEMNALMNYYGASTEDEILTGNLRNRASY-----LQRD-NRRYGDMKDRILLSA 1066
K+ Y+ + L+ + +TE E+ +G ++ + LQ D +++ +K R
Sbjct: 284 LKQQYDVAVRRLLKQFRVATEFELYSGWAMSKPAVGSDYKLQEDLGQQFDTVKQRF---R 340
Query: 1067 KNLQNEAKEWFGSSCKENEHPQLASAWYHVTYSPS---------------YCKERMALLS 1111
+ EA GS +E L +A Y VT + Y + M L+S
Sbjct: 341 EMCIQEAGIAGGSKLEE-----LVAAIYKVTEDEAKDFLAEAEAEGEALEYSPKAMPLIS 395
Query: 1112 FPWIVGDILLNI 1123
FPWI +L+ I
Sbjct: 396 FPWIFHWVLVKI 407
>gi|302698389|ref|XP_003038873.1| hypothetical protein SCHCODRAFT_64962 [Schizophyllum commune H4-8]
gi|300112570|gb|EFJ03971.1| hypothetical protein SCHCODRAFT_64962 [Schizophyllum commune H4-8]
Length = 984
Score = 175 bits (443), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 153/566 (27%), Positives = 262/566 (46%), Gaps = 81/566 (14%)
Query: 383 DHNVMSCYRALVTPMKIYCLGPELETSNYVVKNF-AKYASDFMRVTFVEEDWSKLPANAL 441
D +V +VTP + GP E SN +++ + AKY F+RV+FVEE L
Sbjct: 403 DGSVFDSLHVIVTPTTMILEGPFPERSNRIIRMYDAKYHDCFLRVSFVEE-------GRL 455
Query: 442 STSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMF------ 495
R + RT I RI +L+ G+ I +EFLA+S S L+ ++VW
Sbjct: 456 QYRFDREVDG---RTFIRERIGPLLKKGLHIAGHKFEFLAYSQSALKEHAVWFVKPFRPD 512
Query: 496 ASNDEVSAEDVRGWMGCFNKIRS---VSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEV 552
+V+A + +G F+ + ++ AAR+ Q F+++ ++ V +++ D+
Sbjct: 513 GQRADVNAATIIAGIGDFSTSKDRFCPARYAARLSQAFTATDASVFVEAEEIGYHDDIS- 571
Query: 553 TSDGNTYCFSDGIGKISLSFARQVAQKCGLSH--------TPSAFQIRYGGYKGVIAVD- 603
TSDG Y F+DG+G +S AR + + TP++FQ+R G KG+++VD
Sbjct: 572 TSDG-AYHFTDGVGTMSKEMARDTWTELRRTRKRARKSKGTPASFQVRLMGSKGMLSVDY 630
Query: 604 RNSFRKLSLRRSMLKFESRNRM-LNVTK-WSESMPCFLNREIISLLSTLGVKDEVFEAMQ 661
+ R + LR SM+KFE+ + + L + + + +LNR +I LL LGV E F Q
Sbjct: 631 KLRGRAVCLRPSMIKFEAPDSLNLEIARAFDRPGKYYLNRPLIMLLEGLGVPYETFLKYQ 690
Query: 662 QQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNV-----EPYLSMMLLS 716
+ + + E A +L+ G+ + L +LL + + + + ML
Sbjct: 691 DLAVRDAHRATESLEHAARMLEAF-GLGTSFRLPSVLLNLEKLGIDHLPGDAFYDRMLEF 749
Query: 717 HHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRV 776
+ L LK+ RI +P L+G D L G+VF V +E++S
Sbjct: 750 AINHVLRVLKNHARIPIPGAYTLVGVADVHRYLAEGEVFACV----KEVDS--------- 796
Query: 777 DDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYE----MKLEEKDYVDCIIFPQK------- 825
++ ++G +L++++P +HPGDV+V+ A+ ++ + ++F K
Sbjct: 797 -NRIEYLEGDILISRSPTIHPGDVQVVRAIGRPPAGSPFAQEPLANTVVFSVKGMLLGPF 855
Query: 826 -------------GERPHPNECSGGDLDGDIF-FISWDN---DLIPCETEPPMDYTGRRS 868
G RP P+ GGDLDGD++ I D + P T P Y
Sbjct: 856 QARHEQHLTVSHSGSRPLPSMLGGGDLDGDVYNLICLDTTHPEFRPARTCDPASYAAAPR 915
Query: 869 RIMDHDVTLEEIHKFFVDYMINDTLG 894
+++D ++++ F +D+M D G
Sbjct: 916 KVLDRPANMDDVADFVLDFMSFDVRG 941
>gi|170577358|ref|XP_001893975.1| RNA dependent RNA polymerase family protein [Brugia malayi]
gi|158599674|gb|EDP37189.1| RNA dependent RNA polymerase family protein [Brugia malayi]
Length = 261
Score = 173 bits (439), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 112/268 (41%), Positives = 155/268 (57%), Gaps = 34/268 (12%)
Query: 722 LSDLKSRCRIYVPK--GRLLIGCFDETGILNYGQVFVRVTMT-REELESKDQSFFHRVDD 778
L L ++ +I +P GR + G DETG L +GQ+FV+ T + S + F
Sbjct: 8 LEKLIAKIQIQIPSHLGRSMFGVMDETGQLQWGQIFVQCTRNIWLKTPSPSAAKF----- 62
Query: 779 KTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGD 838
I+KGKV++TKNPC+ GDVRV EAV +L VD ++FPQ G RPHP+E +G D
Sbjct: 63 ---ILKGKVMLTKNPCIVAGDVRVFEAVDIPELHH--LVDVVVFPQHGPRPHPDEMAGSD 117
Query: 839 LDGDIFFISWDNDLIPCETEPPMDYTGRRS--RIMDHDVTLEEIHKFFVDYMINDTLGAI 896
LDGD + + WD +LI EPP+D+T S +I+D E+ KFFV+Y+ D++G+I
Sbjct: 118 LDGDEYSVIWDQELIFEHNEPPLDFTKSTSGNKIIDEAQVDLEMRKFFVNYIKQDSIGSI 177
Query: 897 STAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTG-APAEMPLA-----------LKP 944
S A LV+AD S C+++A HS AVDF KTG APA PL L P
Sbjct: 178 SNAFLVNADL--YGITSEVCINIAKKHSKAVDFPKTGDAPA--PLTRQWTHDKNGNMLPP 233
Query: 945 ---KEFPDFMEREDKPRYISFGVLGKLY 969
+ +PDFM + +P YIS ++G+LY
Sbjct: 234 ERAERWPDFMCKNHEPSYISSRLVGQLY 261
>gi|389748392|gb|EIM89569.1| RdRP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 1274
Score = 171 bits (432), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 174/663 (26%), Positives = 298/663 (44%), Gaps = 101/663 (15%)
Query: 389 CYRALVTPMKIYCLGPELETSNYVVKNFAKYAS----DFMRVTFVEEDWSKLPANALSTS 444
C+ +TP ++ GP +N V++ + +Y S +F+RV F +ED + N +
Sbjct: 425 CHHITITPTRMLLEGPYPTQNNRVIRGYQEYDSTLVGNFVRVDFRDEDRFQYRFN---RA 481
Query: 445 IQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRN-NSVWMFASND---- 499
+ G + R+L L+ G +G +H++F A+S+S LR+ +++W D
Sbjct: 482 VDGGYL-------LEKRVLDFLKPGFSLGGRHFDFFAYSSSSLRDSHALWAIHPFDVPVG 534
Query: 500 --------EVSAEDVRGWMGCFNK-IRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDV 550
++A+ +R +G F+ I SK AAR+GQ S++ ++ + E D
Sbjct: 535 ASPTILCGHITADMIRHSLGNFSTVINQPSKLAARVGQTCSATTPSVRL---KREQWDDD 591
Query: 551 EVTSDGNTYCFSDGIGKISLSFARQV-AQKCGLS-------HTPSAFQIRYGGYKGVIAV 602
V + Y +DG+G IS ++ A C P AFQIR+ G+KGV+ V
Sbjct: 592 MVDLGESPYEHTDGVGTISSDLRDEIWATLCSKGWDKDKDRAKPDAFQIRFLGFKGVVVV 651
Query: 603 DRN-SFRKLSLRRSMLKF-----ESRNRMLNVTKWSESMPCF-LNREIISLLSTLGVKDE 655
D + ++ LR SM KF E N + + + + LNR I +L GV +
Sbjct: 652 DYCLTGIRMRLRPSMKKFDVDEEEKNNASFEIVRAFDRPNRYSLNRSTIMVLEDRGVPID 711
Query: 656 VFEAMQQ---QQLILLGKMLINREAALDVLQKLNGVDSKNILVKM--LLQGYEPNV---- 706
F +Q+ + + G + + A L + + G D IL ++ L NV
Sbjct: 712 TFMKLQEKAKETIFTAGDSIASFVAFLRINRLGIGFDLPLILERLAVLKDSSHKNVVRSF 771
Query: 707 -EPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREEL 765
P+L +L ++L DLK + +I VP G L+G DE GQ +++ + +
Sbjct: 772 ENPFLERVLRFAMNSRLRDLKHKAQIPVPGGFKLVGVADE------GQAYIQEGLDPSSV 825
Query: 766 ES-KDQSFFHRVDD----KTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEE----KDY 816
+ K+ + V D + +KG +T++P PGD++ + A+ + ++ +
Sbjct: 826 ATLKEGEIYACVRDGHKAEPKFLKGDCFITRSPVNDPGDIQRVRAIGKPPEDKVCFFRGL 885
Query: 817 VDCIIFPQ-KGERPHPNECSGGDLDGDIFFI---SWDNDLIPCETEPPMDYTGRRSRIMD 872
+ ++ P G R + GGD+DGD+F I D++L+P +PP +Y + +D
Sbjct: 886 QNVVVLPAVPGTRSLASCLGGGDVDGDMFDIVGFDCDSNLLPTLHKPPAEYKSVGTYTLD 945
Query: 873 HDVTLEEIHKFFVDYMINDTLGAISTAHL-------------------VHADRDPDKARS 913
H T +++ F V+Y+ +D LG +S L V D+ D +
Sbjct: 946 HPATEDDVWSFVVEYIQSDVLGLLSERLLTIAGETLSSSVHRPTNGTDVSPDQSEDGMSN 1005
Query: 914 SKCLHLATLHSMAVDFAKTGAPAEMP-LALKPKEF-PDFMERE-----DKPRYISFGVLG 966
CL LA L S AVD+ K G E + P F P++ E + Y S LG
Sbjct: 1006 PLCLELAKLCSQAVDYPKNGIAVETDRIPYPPTRFRPNWARAEVSDEREGDFYQSDRALG 1065
Query: 967 KLY 969
+L+
Sbjct: 1066 RLF 1068
>gi|4768840|gb|AAD29638.1|AF117611_1 DosA protein [Dictyostelium discoideum]
Length = 1069
Score = 171 bits (432), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 153/550 (27%), Positives = 253/550 (46%), Gaps = 91/550 (16%)
Query: 546 MIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRN 605
MIPD+ ++ G+ F++G G I + Q+ + + A+QIR GG KGV+ ++ N
Sbjct: 1 MIPDI-ISKGGHN--FTEGCGFIGFKLVELINQQNNYNSSTCAYQIRLGGSKGVLVLNEN 57
Query: 606 -SFRKLSLRRSMLKFE---------SRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDE 655
L +R SM KFE ++ L + S + C LNR+ I+LLS GV+D
Sbjct: 58 IDEMSLQIRPSMSKFELDYKSGQLDGGHKTLEIVSASTTSRCKLNRQAITLLSNAGVEDS 117
Query: 656 VFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLL 715
F M + +L + L++ +++ ++L G ++I L Y Y+ +LL
Sbjct: 118 TFLQMLEVELNQNAQTLVD----VNLSKELLGDFFQHITEYELFNDY------YIRSILL 167
Query: 716 SHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHR 775
++++L ++ +C I V + R L+G D +G L V++ V EEL+ D
Sbjct: 168 KLYKSKLIKIQDKCWIEVKESRNLLGVCDTSGTLPEDTVYIEV----EELDPIDNLM--- 220
Query: 776 VDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECS 835
K ++ G+V V KNPC HPGDVR L+A+ L K V + F G P+ +CS
Sbjct: 221 ---KPKVIIGRVAVLKNPCHHPGDVRFLKAIDHPPLNGKRNV--LFFSTNGMVPNFKQCS 275
Query: 836 GGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIM----------------DHD----- 874
G DLDGD +F+ +D LI + Y G + D+D
Sbjct: 276 GSDLDGDRYFVIYDQTLIREDLITHEPYLGEEQTVNPLIGEEDSDDDQYENDDNDITIPT 335
Query: 875 --------VTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMA 926
T ++ ++ + LG IS HL A D +K S + +A ++
Sbjct: 336 STTTKSTNNTPTKLSDIYLKNVDKSKLGTISNTHL--AISDIEKVSSINSIKVAIQCAIE 393
Query: 927 VDFAKTGA----PAEMPLALKPKEFPDFMERED-----------KPRYISFGVLGKLYRA 971
VD KT P ++ LK K +P FM+ ++ + YIS V+GK+Y +
Sbjct: 394 VDSVKTSVHGIIPRDVKSILKEKGYPHFMKIKNGSTFEYKGGNQRKYYISDRVIGKIYDS 453
Query: 972 TLDSIMQIRSNAIW-SEKIAEASYDHDLEVDGFEAFLGVAESHKEM-YEEEMNALMNYYG 1029
N +W + + EA D L V G++ +L M Y+ ++N+++ +G
Sbjct: 454 A--------ENLLWFGDFLPEAKVDESLLVQGYKEYLNHENFTTYMDYKSKINSILRRFG 505
Query: 1030 ASTEDEILTG 1039
A +E+++L G
Sbjct: 506 AQSEEDLLIG 515
>gi|769816|emb|CAA83245.1| unnamed protein product [Phanerochaete chrysosporium]
Length = 953
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 139/517 (26%), Positives = 232/517 (44%), Gaps = 66/517 (12%)
Query: 383 DHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALS 442
+ ++ C VTP GP E SN V++ + Y F+R+ FV+E L
Sbjct: 425 NQDIFDCLHVTVTPTTHRLDGPYPERSNRVMRMYPDYHDCFVRINFVDE-------TDLQ 477
Query: 443 TSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVW-----MFAS 497
R + + + I R+ IL +GI I +H+EFLA+S S L+ ++VW M +
Sbjct: 478 FRFDREVDGRAF---IKRRVGEILTNGIDIAGRHFEFLAYSQSALKEHAVWFVKEFMLPN 534
Query: 498 NDEVSAEDVRGWMGCFNKIRSVSKCAARMG----QLFSSSKQTLVVPVQDVEMIPDVEVT 553
V+A + +G F + + C AR G Q F+++ ++ V +V I D+E
Sbjct: 535 GTIVNARTIIAGLGDFTRDHQLIYCPARYGARISQAFTATDSSVKVQPDEVFEIDDIEGP 594
Query: 554 SDGNTYCFSDGIGKISLSFARQVAQKCGLSHT-------PSAFQIRYGGYKGVIAVDRN- 605
+ T+CF+ G+G +S+ AR + +K P A QIR+ G KG+++VD
Sbjct: 595 T--GTWCFTSGVGTMSVQLARDIWKKLAARRGGSRWKTYPRALQIRFRGSKGMLSVDHTL 652
Query: 606 SFRKLSLRRSMLKFESRNRMLNV---TKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQ 662
R + LR SM+KFE+ + ++ ++ P +LNR +I ++ LGV EVFE +Q
Sbjct: 653 QGRAICLRPSMIKFEAPESLTDIEIARAFNRPGPFYLNRPLIMIMEHLGVPYEVFEELQD 712
Query: 663 QQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEP-----YLSMMLLSH 717
+ + + + E A +L+ G+ + L + L ++ V P + M+
Sbjct: 713 MAVEEAQESVESLEKAARLLETF-GLGASYRLTSIFLSLHKLGVGPLTGDEFWQKMMDFA 771
Query: 718 HENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVD 777
+ L +LK RI VP L+G D G L +VF + +D
Sbjct: 772 INHVLRELKHHARIPVPNAWNLVGVADVHGYLEQDEVF---------------GCIYPLD 816
Query: 778 DKTSI-VKGKVLVTKNPCLHPGDVRVLEAVYE----MKLEEKDYVDCIIFPQKGERPHPN 832
I + G LVT++P +HPGDV+V + E + + ++F KG
Sbjct: 817 GTGPIYLDGPTLVTRSPTIHPGDVQVAHGIGRPPRGSPFEHESLRNTLVFSTKG------ 870
Query: 833 ECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSR 869
S + D +FF +D+ + P + R R
Sbjct: 871 --SSANFDRLVFFSIHPDDVFRFASSPVLSRRRRSGR 905
>gi|402468934|gb|EJW04010.1| hypothetical protein EDEG_01704 [Edhazardia aedis USNM 41457]
Length = 2457
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 90/207 (43%), Positives = 123/207 (59%), Gaps = 7/207 (3%)
Query: 764 ELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFP 823
+ E ++++ D T+I+ G ++V KNPCLHPGDVR+ EAVY+ +LE D I+F
Sbjct: 18 QCEKTEKTYTLPYDRDTNILFGSIVVAKNPCLHPGDVRIAEAVYKKELEH--LQDVIVFS 75
Query: 824 QKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKF 883
KG RP N CSG DLDGD + + WD LIP +T P Y + +M VTL ++ F
Sbjct: 76 GKGSRPLFNMCSGSDLDGDQYAVIWDKRLIPTKTVDPDTY-DNTTILMKEMVTLNDVINF 134
Query: 884 FVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALK 943
+V YM D LG I+TAHL +DR +C+ LA L + VDF KTG A +P L
Sbjct: 135 YVRYMKEDELGLIATAHLATSDRLS--IMDKECITLAKLFNKGVDFPKTGYVARLPDDLL 192
Query: 944 PKEFPDFMEREDKPRYISFGVLGKLYR 970
P +PDFM++ +Y S +LGK+YR
Sbjct: 193 PSSYPDFMQQN--SQYKSDKILGKMYR 217
>gi|393244916|gb|EJD52427.1| RdRP-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 813
Score = 167 bits (424), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 195/710 (27%), Positives = 302/710 (42%), Gaps = 100/710 (14%)
Query: 461 RILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKI---R 517
R+L +++ G+ G + FL F+ SQL ++ F D + + + + G +
Sbjct: 72 RLLELMRHGLETGGSRFSFLGFTESQLGAGALLFFEEGDGYTIDSMLEYFGELEPVFVKS 131
Query: 518 SVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVA 577
K AAR+G FSS+K + D+ I D DG +DG G I S ARQ+
Sbjct: 132 GYGKYAARLGLSFSSTKPVYELSPSDLISIDD-RFALDGTVT--TDGCGLIKDSLARQLC 188
Query: 578 QKCGLSHTPSAFQIRYGGYKGVIA---------VDRNSFRKLSLRRSMLKFESRNRMLNV 628
G+++T + FQ+R GG KGV+A + +NS ++ R SM K+ +++ +
Sbjct: 189 ILLGIANTTAIFQVRIGGIKGVLARYPDDVFERLAQNSVAVIAYRPSMFKYRGGPQIVEL 248
Query: 629 TKWSESMP--CFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLN 686
K S++ P LN + I LL TLGV EVF+ + QL + + +R++A+ L+
Sbjct: 249 NKISKTRPDSARLNIQFILLLLTLGVGVEVFQQLLSIQLERIDNIFSDRKSAIAFLENAY 308
Query: 687 GVDSKNILVKMLLQ--------GYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRL 738
V + + L Q G++ + EP L L + L L+ + +I V +
Sbjct: 309 DVTLDSNATRSLYQDAFLMLHAGFDLS-EPQLQWSLNTLRTQMLKRLQDKLQIEVQDSAM 367
Query: 739 LIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPG 798
L G DET L +V+V L + F R V+V KNP PG
Sbjct: 368 LFGVCDETNSLEEDEVYV-------NLPERGGGFGGRT----------VVVMKNPAYAPG 410
Query: 799 DVRVLEAVYEMKLEEKDYVDCIIFPQKGE--RPHPNECSGGDLDGDIFFISWDNDLIPCE 856
D+RV +AV L +CI+F R ++ SGGDLDGD FF+SWD+ LIP
Sbjct: 411 DIRVFKAVDRPSLRICP-TNCIVFASSARCGRSPADKMSGGDLDGDTFFVSWDSSLIPSR 469
Query: 857 --TEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSS 914
+ P + L E K F+ LG +S + A+ D A+
Sbjct: 470 VASPQPRPKPIPPLQPPPRGPILAEAAKTFIALHNKMLLGQMSNSWKETAENSADIAQDK 529
Query: 915 KCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLD 974
CL L + A+D KTG + AL F + S G + L A L
Sbjct: 530 YCLQLVPMIEAALDITKTGEDVDQLAAL-------FRRTRFRSGQRSQGCISHL--APLR 580
Query: 975 SIMQIRSNAIWSEKIAEASYDH---DLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGAS 1031
++ I +A+++H D E+ E + +AE E + E A+M + A
Sbjct: 581 EMITIE---------PKATFEHWRCDAELVQTET-MPLAE--WERHTREGAAVMPKFNAE 628
Query: 1032 TEDEILTGN----LRNRASYLQ--RDNR-RYGDMKDRIL---LSAKNLQNEAKEWFGSSC 1081
+ GN +N AS Q D+R R + +DR + K LQ+
Sbjct: 629 LAKALSAGNDELPYQNAASQRQTSSDSRTRVDETRDRFIERYFGGKTLQD---------- 678
Query: 1082 KENEHPQLASAWYHVTYSPSYCKERMALLSFPWIVGDILLNIKSVNSRKA 1131
N A AWY + Y + K+ SF W+ L +K++ A
Sbjct: 679 -RNSEAMRAVAWYKLGY--GWQKQ-----SFAWLGLRYLCRLKALARHGA 720
>gi|443927204|gb|ELU45719.1| RNA-directed RNA polymerase [Rhizoctonia solani AG-1 IA]
Length = 1713
Score = 167 bits (423), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 140/516 (27%), Positives = 233/516 (45%), Gaps = 82/516 (15%)
Query: 462 ILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSK 521
I L G+ I + Y F S SQLR+ S W+ A++ + + + +KI +++K
Sbjct: 88 IQRALTKGLFINGQQYRFYHHSNSQLRSRSCWLRAASSDEELDRRIEKLCDVSKINNIAK 147
Query: 522 CAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCG 581
A R+G LFS ++ + + IPD+ + + FSDG G IS F + +A+K
Sbjct: 148 RAKRIGLLFSGAEIDWDLNPALTKDIPDITIAEE----LFSDGCGLISRRFMQLLAKKKK 203
Query: 582 LSH-----TPSAFQIRYGG-----------YKGVIAV----DRNSFRKLSLRRSMLKFES 621
+ H TPS QIR +GV+A+ D+ + + R SM K ++
Sbjct: 204 IVHRGYRYTPSVIQIRAVCSFVSHNVTILIIQGVLAIHPQLDQAAQHHVHFRDSMRKLKT 263
Query: 622 -RNRMLNVTKWSESMP-CFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAAL 679
+ +V +S+ LN +II LLS LG+ +E+ + Q + + +A+
Sbjct: 264 GADNTFSVVDYSKPYQFARLNNDIIVLLSALGITNEMLKTKQDAYFKWIESANKDMSSAM 323
Query: 680 DVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDL------KSRCRIYV 733
+ L L D + ++ + G + E + + + +++ K R RI++
Sbjct: 324 NFLSALGKDD---LAERVFMDGLD---EEQVQAQIRNAQVEEVNAFQKPETGKDRSRIFL 377
Query: 734 PKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNP 793
+ R L G D G+L G+V VR+ R+ T++ ++V +NP
Sbjct: 378 LQSRFLFGVCDPYGLLEEGEVHVRIMEPRK--------------GATTLSNIDLMVVRNP 423
Query: 794 CLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI 853
CLHPGD+ L AV+ L+ VDCI+F KG+R P SGGDLDGD F + WD D++
Sbjct: 424 CLHPGDILKLRAVHHTGLDH--LVDCIVFSGKGKRAAPAMSSGGDLDGDRFTVVWDPDIV 481
Query: 854 PCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARS 913
P DY ++++ + +T +++ F +Y S
Sbjct: 482 PRTIAQSYDYPAAKTQV-NLRITRKDLATHFANY------------------------NS 516
Query: 914 SKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPD 949
+C L LHS +VD A+ P + +KP E D
Sbjct: 517 PECQELNALHSQSVDGARIRIPERL---IKPPEVTD 549
>gi|347841952|emb|CCD56524.1| hypothetical protein [Botryotinia fuckeliana]
Length = 461
Score = 167 bits (423), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 103/262 (39%), Positives = 143/262 (54%), Gaps = 17/262 (6%)
Query: 781 SIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLD 840
++++G LV +NP LHPGD+RV++AV L D ++FPQ GER P+ CSGGDLD
Sbjct: 39 NVIEGICLVGRNPSLHPGDLRVVQAVNIPALHH--LRDVVVFPQSGERDVPSMCSGGDLD 96
Query: 841 GDIFFISWDNDLIPCETE-PPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTA 899
GD FF+ WD DL P E PM Y + V + ++ KFFV YM ND+L +I+ A
Sbjct: 97 GDDFFVIWDKDLQPTEWNCEPMSYAALDPVALKRPVVVTDLQKFFVKYMKNDSLPSIAHA 156
Query: 900 HLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKP-- 957
HL AD + KCL LA LHS AVD+ KTG PA M L P ++P FME+ +P
Sbjct: 157 HLAQADYQKQGIKDPKCLKLAELHSKAVDYVKTGQPATMQKYLAPPKWPHFMEKIHQPAS 216
Query: 958 -RYISFGVLGKLYRA--TLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHK 1014
+Y S +LG+L+ ++D + Q + ++I A E+D A L A K
Sbjct: 217 KQYHSQKILGQLHDKVESVDFVPQYEEP--FDKRILRA-----YELDN--ATLKAARQTK 267
Query: 1015 EMYEEEMNALMNYYGASTEDEI 1036
Y+ M ++ TE E+
Sbjct: 268 TKYDTAMRRILAQQDIKTEFEV 289
>gi|395327643|gb|EJF60041.1| RdRP-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 734
Score = 166 bits (420), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 138/500 (27%), Positives = 221/500 (44%), Gaps = 58/500 (11%)
Query: 468 DGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKI---RSVSKCAA 524
+GI Y FL ++ SQ++ + F + + E + G + K AA
Sbjct: 67 EGIEHNGTVYRFLGYTESQVKAGKLMFFHEGEGWTVERMLESFGDLPGVYLKSGYGKYAA 126
Query: 525 RMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSH 584
R+G FSS+ Q+L +P++ IPD+ DG+ + SDG G I SFA Q+ + L
Sbjct: 127 RLGLSFSSTVQSLDIPLECAIEIPDL-TAPDGSLH--SDGCGMIRDSFAAQLCARHNLPP 183
Query: 585 TPSAFQIRYGGYKGVI---------------AVDRNSFRKLSLRRSMLKFESRNRMLNVT 629
+ FQ+R GG KG++ + R ++ R SM K+ L +
Sbjct: 184 DTTVFQVRRGGIKGLLVRYPDNEFDVRCRTHSRTRGGHYMIAYRPSMFKYAGGPTCLELN 243
Query: 630 KW-SESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQ-KLNG 687
S S LN + ++LL TLGV +F+ + QL L+G +L +RE AL ++ +L+
Sbjct: 244 NHNSPSASARLNVQFMALLLTLGVPFAIFQRLVLDQLDLIGSILTDREKALQYVKGELDA 303
Query: 688 V---DSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFD 744
D L MLL + + EPY+ L + Q L+++ + +P L G D
Sbjct: 304 AAEDDFAQGLYAMLLARQDLS-EPYVRHKLETFQRKQYITLRNKMSLRIPDSAYLFGVVD 362
Query: 745 ETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLE 804
E G+L +V V + +++ ++ V+V +NP +PGD R L
Sbjct: 363 EAGVLAPNEVHVNLP------------------NRSGVLVRDVIVGRNPSYYPGDFRKLR 404
Query: 805 AVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYT 864
AV L + + +CI+F P+ +GGDLDGD++F+ WD LIP PP
Sbjct: 405 AVDHPSL--RHHRNCIVFSSNAAHSIPDTIAGGDLDGDMYFVCWDPCLIPPREAPPFSRP 462
Query: 865 GRRSRIMDHDVT-------LEEIHKFFVDYMI----NDTLGAISTAHLVHADRDPDKARS 913
+ L + K +D + + LG ++ + PD ARS
Sbjct: 463 QSATAAAQAGTAPASATRQLSNMPKAAIDTFMQLKFSRLLGMMAKEWTRQVELTPDLARS 522
Query: 914 SKCLHLATLHSMAVDFAKTG 933
+ C L L A+D K+G
Sbjct: 523 AYCQELVPLIESALDLMKSG 542
>gi|406695038|gb|EKC98353.1| RNA-dependent RNA polymerase [Trichosporon asahii var. asahii CBS
8904]
Length = 1018
Score = 165 bits (417), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 142/470 (30%), Positives = 223/470 (47%), Gaps = 61/470 (12%)
Query: 382 IDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANAL 441
+ +++ VTP ++ P+ ETSN V + ++ +RV F +E
Sbjct: 372 VSRHIVMIRTVTVTPTRVLVGPPQPETSNSVTRRYSDKLDAIIRVHFTDE--------GE 423
Query: 442 STSIQRGIFSKPY-----RTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFA 496
++Q+ F+KP + +R+ LQ GI + Y +A S SQ +++++W F
Sbjct: 424 RLNVQK--FTKPADDACPEKGLMARVRRALQYGIEVAGCRYYPVASSGSQQKDHNMW-FI 480
Query: 497 SNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQ-TLVVPVQDVEMIPDVEVTSD 555
+ + ++ WMG K + V+K AAR+G FS+S+ L V V D+ +
Sbjct: 481 DHTVIDRPELSRWMGQV-KEQVVAKHAARLGLPFSASRAVALKVTVSDLADV-------F 532
Query: 556 GNTYCFSDGIGKISLSFARQVAQ----KCGLSHTPSAFQIRYGGYKGVIAV--DRNSFRK 609
N +CF+DG G + RQ A+ K PSA Q R GG KGV+A +
Sbjct: 533 RNDHCFTDGCGVAGIDVMRQAARSMNNKRKTGEAPSALQFRLGGAKGVLAYWPGMAGNDE 592
Query: 610 LSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLG 669
+ +R S KFESR + LNV + ++ FLNR+ I+++S GV D +FE QL +
Sbjct: 593 ILMRPSQTKFESRLKELNVVRIAKYQAAFLNRQFINIMSACGVPDALFE-----QLFVEA 647
Query: 670 KMLINREAALDVLQKLNGVD-------SKNILVKMLLQGYEPNVEPYLSMMLLSHHENQL 722
I VL+ L D ++ +V+++ G+ N P + + L
Sbjct: 648 TQAIEGLPDRAVLRDLTKDDLVLFQQYTEFPMVQVIDAGFARN--PMIQDLARLVEARAL 705
Query: 723 SDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSI 782
DLK R R+ + G LIG DETG+L G+VFV+ +T +D+ +
Sbjct: 706 QDLKWRARVKLDMGVYLIGVADETGLLKEGEVFVQYQVTE--------------NDEPVV 751
Query: 783 VKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPN 832
V G V+V + P LHPGDVR AV +L + + ++F KG RP PN
Sbjct: 752 VTGAVVVCRAPALHPGDVRTARAVDHPQL--RHLKNVVVFSIKGARPLPN 799
>gi|449550168|gb|EMD41133.1| hypothetical protein CERSUDRAFT_111700, partial [Ceriporiopsis
subvermispora B]
Length = 595
Score = 164 bits (416), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 130/478 (27%), Positives = 214/478 (44%), Gaps = 55/478 (11%)
Query: 466 LQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKI---RSVSKC 522
+ +G+ + Y F F+ + ++ V F ++ + V+ G +++ K
Sbjct: 65 VHEGVTVASARYAFFGFTENHVKEGRVICFREDESWTVRHVKEQFGDLDEVYQKHGYGKY 124
Query: 523 AARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGL 582
AAR+G FSS+ Q+L V ++ +PD+ DG+ + +DG G I SFA ++ L
Sbjct: 125 AARLGLSFSSTVQSLDVAPEEALEVPDLRA-PDGSLH--TDGCGMICDSFAAEICHAHEL 181
Query: 583 SHTPSAFQIRYGGYKGVI----------------AVDRNSFRKLSLRRSMLKFESRNRML 626
+ FQ+R GG KG++ + K++ R SMLK+ L
Sbjct: 182 PADTTVFQVRRGGIKGLLVRYPDDKFAELCAKHRGIPTPPSIKMAYRPSMLKYSGGPTAL 241
Query: 627 NVTKWSE-SMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQ-K 684
+ S LN + I +L TLG+ E FE M ++ L ++G + +R+ AL L+ +
Sbjct: 242 ELNDCSRCPTSARLNAQFIIMLLTLGINIETFEKMLKEHLDIIGCITHDRDVALRYLKGE 301
Query: 685 LNGVDSKNIL--VKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGC 742
L+ D V LL Y EPY+ L Q L + + V + + G
Sbjct: 302 LDASDHDTFGQDVYALLLAYHDLSEPYVEWKLKQFQALQYKSLYKKLNLRVEESCYVYGV 361
Query: 743 FDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRV 802
DE GIL +VF+ + +T +V G VLV +NP PGD R
Sbjct: 362 VDEDGILEGDEVFINLP------------------GRTGVVLGNVLVARNPSYSPGDFRK 403
Query: 803 LEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPP-- 860
L AV++ +L K + CI+F +K P+ + GDLDGD +F++WD LIP P
Sbjct: 404 LRAVHDPRL--KHHKHCIVFSRKASHSIPDSMASGDLDGDEYFVTWDPTLIPSHMATPHQ 461
Query: 861 --MDYTGRRSRI----MDHDVTLEEIH-KFFVDYMINDTLGAISTAHLVHADRDPDKA 911
+ + R+ + + TLEE F++ + LG ++ + + A+ P A
Sbjct: 462 RALPASATRASVSPTRITRQCTLEEAAIDTFIENAFSRLLGKMANSWSILAEATPQLA 519
>gi|218188371|gb|EEC70798.1| hypothetical protein OsI_02249 [Oryza sativa Indica Group]
Length = 307
Score = 162 bits (409), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 107/288 (37%), Positives = 155/288 (53%), Gaps = 31/288 (10%)
Query: 861 MDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLA 920
MDY+ ++ + V+ +I FF+ MI++ LG I AH+VHAD A KC+HLA
Sbjct: 1 MDYSPPEAKQLPRQVSQHDIIDFFLKNMISENLGRICNAHVVHADLSEYGAMDEKCIHLA 60
Query: 921 TLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIR 980
L + AVDF KTG A MP LKPK +PDFM +ED Y S +LG+LYR SI +
Sbjct: 61 ELAATAVDFPKTGKLAIMPPHLKPKVYPDFMGKEDGQSYKSEKILGRLYR----SIQEAS 116
Query: 981 SNAIWSEKIA---EASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEIL 1037
+ + S+++ + YD DLEV G FL A K Y+ +++AL++ Y TE E++
Sbjct: 117 NGDVVSQEVCTPNDLPYDIDLEVPGASDFLASAWQCKCSYDAQLSALLSQYRVRTEAELV 176
Query: 1038 TGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGS----SCKENE------HP 1087
TG++ S ++ +++ GD+KDR+ + L+ E K F S C+ ++ +
Sbjct: 177 TGHI---TSLVKNSSKKQGDIKDRLKTAYSALRKEFKSTFESIASDQCEIDDDEKNLLYE 233
Query: 1088 QLASAWYHVTYSPSYC-----------KERMALLSFPWIVGDILLNIK 1124
ASAWY VTY P + +E A LSF WI D L IK
Sbjct: 234 MKASAWYQVTYHPKWVEKSRGILGPDGEEIPASLSFAWIPVDYLARIK 281
>gi|406867650|gb|EKD20688.1| RNA-dependent RNA polymerase 1 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 901
Score = 161 bits (408), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 160/581 (27%), Positives = 243/581 (41%), Gaps = 125/581 (21%)
Query: 385 NVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTS 444
NV S +RA VT I GP+LE++N ++ + ++ FMRV+F ED L +
Sbjct: 367 NVTSIHRARVTATSITLSGPQLESNNRTLRKYKEFHDYFMRVSFGAEDGEPLMYH----- 421
Query: 445 IQRGIFSKPYRTKIY-SRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSA 503
SK +Y R I G+ IG + + FL F S LR S W+ A + +
Sbjct: 422 ------SKVSNYHVYHGRFQEIPDRGVKIGGRVFSFLGFPQSSLRERSYWLVAPFGSLGS 475
Query: 504 ----EDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTY 559
D+ G +G F IRS +KCAAR+GQ FS ++ + + V + D++ + Y
Sbjct: 476 LLLDRDITGGLGNFTLIRSPAKCAARIGQAFSDTRSFMTIDPLIVRNMEDIKRSG----Y 531
Query: 560 CFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVD-RNSFRKLSLRRSMLK 618
FSDG G I+LS C G KG+I++D R +L LR SM+K
Sbjct: 532 VFSDGCGTIALSLL------C-------------LGAKGMISLDSRLDGDQLCLRDSMIK 572
Query: 619 FESRN----RMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLIN 674
F+ + ++T +P ++NR+ I + E+ + + +
Sbjct: 573 FDGSTSNDIEIYDITY--RPLPVYMNRKFIKIDHGEPATKEITSLRMITESPINASSFLK 630
Query: 675 REAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVP 734
R+ D Q E L ++ HE RI VP
Sbjct: 631 RQGVGDSFQ---------------------FPELILRLLRKLKHE---------ARIPVP 660
Query: 735 KGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPC 794
+G L G DETG L G++F + EE K I ++++T+ P
Sbjct: 661 RGWHLHGIMDETGSLKEGEIFC---VGVEE------------GVKNVITSERLVITRAPA 705
Query: 795 LHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIP 854
L PGDVR+ +AV M E + E GGDLDGD F++ WD+D +P
Sbjct: 706 LDPGDVRIAKAV--MPPAESPLM---------------ELGGGDLDGDRFYVIWDDDALP 748
Query: 855 CETEPPMDYTGRRSRIM----DHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRD--- 907
+Y I+ + ++L+ +I T G++ + LV A +
Sbjct: 749 ENEFEAAEYPSLPRWILAALFNAKISLDSA------LIIKRTSGSVPS-QLVTASQQIIC 801
Query: 908 PDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFP 948
+ KC A LH +AVDF KTG PA + P + P
Sbjct: 802 RGGTDAEKCKTFAMLHGVAVDFPKTGIPA---CCVDPTQIP 839
>gi|70608336|gb|AAZ04410.1| putative RNA-dependent RNA polymerase SDE1/SGS2/RDR6 [Nicotiana
benthamiana]
Length = 172
Score = 160 bits (404), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 78/175 (44%), Positives = 111/175 (63%), Gaps = 4/175 (2%)
Query: 676 EAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPK 735
+ A DV+ + ++ N ML G++P EP+L ML S +QL DL+++ RI+VP
Sbjct: 1 DVAFDVITA-SCAEAGNTAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPS 59
Query: 736 GRLLIGCFDETGILNYGQVFVRVTM-TREELESKDQSFFHRVDDKTSIVKGKVLVTKNPC 794
GR L+GC DE G L GQ F++V+ + E K F + ++KG V++ KNPC
Sbjct: 60 GRWLMGCLDELGELEQGQCFIQVSSPSLESCFVKHGPNFSDIKKNLQVIKGLVIIAKNPC 119
Query: 795 LHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWD 849
LHPGDVR+LEAV L DC++FPQKG+RPHP++ SG DLDGD++F++WD
Sbjct: 120 LHPGDVRILEAVDVPGLHH--LYDCLVFPQKGDRPHPDQASGSDLDGDLYFVTWD 172
>gi|343426952|emb|CBQ70480.1| related to RNA-directed RNA polymerase [Sporisorium reilianum SRZ2]
Length = 1037
Score = 159 bits (402), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 161/613 (26%), Positives = 278/613 (45%), Gaps = 86/613 (14%)
Query: 394 VTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKP 453
+TP ++ GP SN V++++ + F R++ E + +T+I
Sbjct: 137 LTPTRVLLSGPHWHMSNRVIRSYPGHWDHFARLSITSE------SREGATTITPNYGFDD 190
Query: 454 YRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMF-----ASNDEVSAEDVRG 508
I R+L IL++GI++ + ++ LA+S+S + +++VW A+ V A VR
Sbjct: 191 AERYIRGRVLDILKNGIIVAGRRFQLLAWSSSSMSSHTVWFVTPFLDATGRLVDANSVRK 250
Query: 509 WMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKI 568
+G F + ++ M D N +DG+G+I
Sbjct: 251 SLGNFKDV------------------------IRKPAMYAD-------NGQDHTDGVGQI 279
Query: 569 SLSFARQVAQKCGLSH------------TPSAFQIRYGGYKGVIAVD-RNSFRKLSLRRS 615
S + V + ++H PSA QIR GG KG+++++ R + + L +R S
Sbjct: 280 SPALMADVWESYLVNHGEFRKRKLLKASAPSAIQIRLGGSKGMLSLNPRLTGKVLYIRPS 339
Query: 616 MLKFESRNRMLNVTKWSES-MPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLIN 674
M KF+S+++ L V S + LNR +++ L GV F A+Q + + +G+ N
Sbjct: 340 MSKFDSQHQDLEVANSSSRCLTAKLNRPLVNALDDRGVHASAFIAIQDEAISQIGRARHN 399
Query: 675 REAALDVLQKLNGVDSKNILV------KMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSR 728
+ ++ + N+ + K+ L + E + ++ + L D+K +
Sbjct: 400 FDETARLVSAFSFGTGCNLRILFEKVHKVGLGAASTDPESFFLVLAKAVTAAALGDMKRK 459
Query: 729 CRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVL 788
RI V G L+G DE G L G+VFV+V E+ D F +V + I+ G+ L
Sbjct: 460 ARIPV-AGVTLLGIADEFGYLKEGEVFVQV-------ETVD---FGQVSRR--ILTGRKL 506
Query: 789 VTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGER--PHPNECSGGDLDGDIFFI 846
+ ++P + P D+ +++ + ++ R P P GGDLDGD++ I
Sbjct: 507 IGRSPTIDPSDITMVQCKKPPPGHPLLQLRNVVVFNTCTRLQPLPRRLGGGDLDGDLYTI 566
Query: 847 SWDNDLIPCETEPPMDYTGR-RSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHAD 905
D L P +P + + ++ + H ++ FF D+M+ND +G +S+ HL +D
Sbjct: 567 YEDERLFPPTPQPEAVFHAKVEAKELSHPCNAHDLADFFADFMLNDFVGLVSSLHLRISD 626
Query: 906 RDPDKARSSKCLHLATLHSMAVDFAKTGAP---AEMPLALKPKEFPDFM----EREDKPR 958
A +C LA LHS A DF KTG +++P +P PDF+ +RE K
Sbjct: 627 ASEAGAADPRCKTLAKLHSQATDFRKTGVAVKRSQLPPMHEPI-VPDFLAQSEKREGKLV 685
Query: 959 YISFGVLGKLYRA 971
Y S LG LYR+
Sbjct: 686 YSSRRALGYLYRS 698
>gi|401885409|gb|EJT49528.1| hypothetical protein A1Q1_01432 [Trichosporon asahii var. asahii
CBS 2479]
Length = 1000
Score = 157 bits (397), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 139/469 (29%), Positives = 220/469 (46%), Gaps = 70/469 (14%)
Query: 382 IDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANAL 441
+ +++ VTP ++ P+ ETSN V + ++ +RV F +E
Sbjct: 372 VSRHIVMIRTVTVTPTRVLVGPPQPETSNSVTRRYSDKLDAIIRVHFTDE--------GE 423
Query: 442 STSIQRGIFSKPY-----RTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFA 496
++Q+ F+KP + +R+ LQ GI + Y +A S SQ +++++W F
Sbjct: 424 RLNVQK--FTKPADDACPEKGLMARVRRALQYGIEVAGCRYYPVASSGSQQKDHNMW-FI 480
Query: 497 SNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDG 556
+ + ++ WMG K + V+K AAR+G +V V D+ +V +G
Sbjct: 481 DHTVIDRPELSRWMGQV-KEQVVAKHAARLG----------LVTVSDL-----ADVFRNG 524
Query: 557 NTYCFSDGIGKISLSFARQVAQ----KCGLSHTPSAFQIRYGGYKGVIAV--DRNSFRKL 610
+CF+DG G + RQ A+ K PSA Q R GG KGV+A ++
Sbjct: 525 --HCFTDGCGVAGIDVMRQAARSMNNKRKTGEAPSALQFRLGGAKGVLAYWPGMAGNDEI 582
Query: 611 SLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGK 670
+R S KFESR + LNV + ++ FLNR+ I+++S GV D +FE QL +
Sbjct: 583 LMRPSQTKFESRLKELNVVRIAKYQSAFLNRQFINIMSACGVPDALFE-----QLFVEAT 637
Query: 671 MLINREAALDVLQKLNGVD-------SKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLS 723
I VL+ L D ++ +V+++ G+ N P + + L
Sbjct: 638 QAIEGLPERAVLRDLTKDDLVLFQQYTEFPMVQVIDAGFARN--PMIQDLARLVEARALQ 695
Query: 724 DLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIV 783
DLK R R+ + G LIG DETG+L G+VFV+ +T +D+ +V
Sbjct: 696 DLKWRARVKLDMGVYLIGVADETGLLKEGEVFVQYQVTE--------------NDEPVVV 741
Query: 784 KGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPN 832
G V+V + P LHPGDVR AV +L + + ++F KG RP PN
Sbjct: 742 TGAVVVCRAPALHPGDVRTARAVDHPQL--RHLKNVVVFSIKGARPLPN 788
>gi|242053113|ref|XP_002455702.1| hypothetical protein SORBIDRAFT_03g022060 [Sorghum bicolor]
gi|241927677|gb|EES00822.1| hypothetical protein SORBIDRAFT_03g022060 [Sorghum bicolor]
Length = 108
Score = 157 bits (396), Expect = 4e-35, Method: Composition-based stats.
Identities = 73/108 (67%), Positives = 82/108 (75%)
Query: 861 MDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLA 920
MDYT R RIMDH VTLEEI K F YM NDTLG IST HL+HAD +P A + KCL LA
Sbjct: 1 MDYTATRPRIMDHAVTLEEIQKHFDSYMTNDTLGVISTVHLIHADHNPLNAHTPKCLQLA 60
Query: 921 TLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKL 968
LHSMAVDFAKTG PAEM L L+P+EFPDFME+ ++P Y+S VL KL
Sbjct: 61 ALHSMAVDFAKTGPPAEMSLTLRPREFPDFMEQWERPMYVSNNVLDKL 108
>gi|409046080|gb|EKM55560.1| hypothetical protein PHACADRAFT_173707 [Phanerochaete carnosa
HHB-10118-sp]
Length = 876
Score = 156 bits (395), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 125/453 (27%), Positives = 217/453 (47%), Gaps = 61/453 (13%)
Query: 389 CYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRG 448
C+ A+VTP + GP LE N V++ +A+ S F+RV F +E L +R
Sbjct: 416 CFHAIVTPSTVRLEGPFLEQCNRVIRKYARNTSCFLRVRFADE-------ARLQFRSERE 468
Query: 449 IFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFAS----------- 497
+ + + I++R +L+ G+VI +H+ FL ++ + L+ ++ W S
Sbjct: 469 VDCRAF---IHNRFGNVLRRGLVIAGRHFHFLGYTQASLKEHTAWFVRSFKQPAVTSDGT 525
Query: 498 --NDEVSAEDVRGWMGCFNKI---RSVSKCAARMG----QLFSSSKQTLVVPVQDVEMIP 548
+ V+A+ + +G F+ I + C AR G Q FSS+ ++ + + D+E++
Sbjct: 526 SCEETVTADTIIAGLGVFDGILYDPELIMCPARYGARQAQCFSSTSASVTIDLDDIEVVE 585
Query: 549 DVEVTSDGNTYCFSDGIGKISLSFARQVAQK-CGLSHTPSA------FQIRYGGYKGVIA 601
D+ V +DG F+DG+G IS + A ++ + C S P + FQIR G KG+++
Sbjct: 586 DI-VDADGER-SFTDGVGTISPNLAAEIWTRLCAASGRPPSERGPRRFQIRIQGAKGMVS 643
Query: 602 VDR-NSFRKLSLRRSMLKF-ESRNRMLNVT-KWSESMPCFLNREIISLLSTLGVKD--EV 656
VD RKL LR SM+KF + +R L + + + +LNR ++ LL L + +
Sbjct: 644 VDHLLQGRKLCLRPSMIKFYAADSRTLEIADAFVKPSKFYLNRPLVMLLEELDILGGYDF 703
Query: 657 FEAMQQQQLILLGKMLINREAALDVLQKLN---GVDSKNILVKMLLQGYEPNVEPYLSMM 713
+ +Q+ + + + AA D+ N D N+ ++ G + + +
Sbjct: 704 LKFLQESVVEKTEAAVQSLYAAADLFDDFNLGRTYDLSNVFRELHHMGIATLDDTFSQQV 763
Query: 714 LLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFF 773
L + L DLK R RI VP G L+G D G L G++F V E ++ +
Sbjct: 764 LCFGRHHVLRDLKYRARIPVPSGWNLVGVADIHGCLEEGEIFACVI----PYEGQEPIYL 819
Query: 774 HRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAV 806
H G L++++P +H GDV+V+ A+
Sbjct: 820 H----------GPTLISRSPVIHRGDVQVVRAI 842
>gi|302682736|ref|XP_003031049.1| hypothetical protein SCHCODRAFT_57049 [Schizophyllum commune H4-8]
gi|300104741|gb|EFI96146.1| hypothetical protein SCHCODRAFT_57049 [Schizophyllum commune H4-8]
Length = 739
Score = 153 bits (387), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 129/440 (29%), Positives = 216/440 (49%), Gaps = 52/440 (11%)
Query: 392 ALVTPMKIYCLGPELETSNYVVKNF-AKYASDFMRVTFVEEDWSKLPANALSTSIQRGIF 450
A++TP +I GP E SN V++ F ++ F+RV+F EE L R +
Sbjct: 296 AIITPTRIILQGPYPERSNRVIRMFDVQHHDSFLRVSFTEE-------TKLQYRFDREVD 348
Query: 451 SKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMF----ASNDEVSAEDV 506
+ + + SR+ +IL++G+VI + +EFLA+S S L+ ++V+ + EV+A V
Sbjct: 349 TASF---VRSRVGSILKNGLVIAGREFEFLAYSQSALKEHTVYFVKPFRVGDTEVNAASV 405
Query: 507 RGWMGCFNKIRS---VSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSD 563
+G F K ++ AAR+ Q F+++ ++VV + +I D+ T DG Y F+D
Sbjct: 406 IASIGNFEKSSDRLCPARYAARLSQAFTATDASIVVNPAETHIISDIS-TPDG-MYHFTD 463
Query: 564 GIGKISLSFA--------RQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRN-SFRKLSLRR 614
G+G +S A R + P+AFQIR+ G KG+++VD R + LR
Sbjct: 464 GVGTMSREMAVDAYTEVNRYRKRAMNGRGIPAAFQIRFMGSKGMLSVDHTLQGRVVCLRD 523
Query: 615 SMLKFE-SRNRMLNVTK-WSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKML 672
SM+KF+ NR L + + + +LNR +I LL LGV E F Q +
Sbjct: 524 SMIKFDCPNNRNLEIARVFDRPAKYYLNRPLIMLLEGLGVPYETFLQHQDAAVQDAYSST 583
Query: 673 INREAALDVLQKLNGVDSKNILVKMLLQGYE-PNVE-----PYLSMMLLSHHENQLSDLK 726
+ A +L+ L G+ + L +LL + N+E + S ML + L +LK
Sbjct: 584 ESLTKAARMLEAL-GLGTSFRLPSLLLNLVKLCNIENLGDNKFYSRMLEFAIHHVLRELK 642
Query: 727 SRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGK 786
+ RI +P L+G D G L ++F + ++ D D+ ++G
Sbjct: 643 NHARIPIPGAYTLVGVADVHGYLKEWEIFACI-------KAHDS-------DEVIYLEGD 688
Query: 787 VLVTKNPCLHPGDVRVLEAV 806
+L+ ++P +HPGDV++ A+
Sbjct: 689 ILIPRSPSIHPGDVQIARAI 708
>gi|440493516|gb|ELQ75976.1| RNA-directed RNA polymerase QDE-1, partial [Trachipleistophora
hominis]
Length = 714
Score = 152 bits (384), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 88/197 (44%), Positives = 113/197 (57%), Gaps = 15/197 (7%)
Query: 781 SIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLD 840
+V G +V KNPCLHPGD+R + VY+ +L Y + ++F +KG RP N CSG DLD
Sbjct: 255 GVVVGNAIVAKNPCLHPGDIRKVHCVYKKELLH--YKNVLVFSRKGTRPTFNMCSGSDLD 312
Query: 841 GDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAH 900
GD++FISWD LIP P Y +H VT +++ FF + D LG IS AH
Sbjct: 313 GDLYFISWDKRLIPRNEHFPQSYQSSSYLSKEHIVT-QDMVNFFTRFAKEDELGKISNAH 371
Query: 901 LVHAD----RDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDK 956
LV++D DP + L LA L SM VDF KTG A +P L+P+ +PDFMER
Sbjct: 372 LVYSDIHGITDP------QALKLAYLFSMGVDFPKTGYIARLPQNLEPEVYPDFMERGRS 425
Query: 957 PRYISFGVLGKLYRATL 973
Y S V+G LYR L
Sbjct: 426 --YKSGRVMGVLYRRVL 440
Score = 92.0 bits (227), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 97/193 (50%), Gaps = 36/193 (18%)
Query: 573 ARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWS 632
A +A+K LS TP+AFQIR+ GYKGV+ V + L LR+SM KF S +L V +S
Sbjct: 2 AHMIAKKLRLSFTPTAFQIRFAGYKGVV-VRAHIPHDLILRKSMRKFNSTYTILEVVNYS 60
Query: 633 ESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLIN-------REAALDVLQKL 685
+ + C+LNR+II +L LG+ F ++Q + L+ + + + + R + ++ ++
Sbjct: 61 QPIECYLNRQIIMILEGLGIPKHNFISLQNEYLMQMYRAINHSLISKYCRIGGVALVDRM 120
Query: 686 NGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDE 745
+G + +M +G RI+V G +L+G DE
Sbjct: 121 SGAVIGRLFREMCAKG----------------------------RIFVSNGVVLMGVIDE 152
Query: 746 TGILNYGQVFVRV 758
G+L +VFVRV
Sbjct: 153 EGVLGENEVFVRV 165
>gi|403358455|gb|EJY78878.1| RNA-directed RNA polymerase [Oxytricha trifallax]
Length = 1079
Score = 150 bits (380), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 148/562 (26%), Positives = 258/562 (45%), Gaps = 54/562 (9%)
Query: 406 LETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTI 465
LE SN V++ F+++ F+ + N I +G + + R + + + I
Sbjct: 256 LEQSNQVIRRHFTNVDKFLKIKFLGGNQELELLNDQYMRI-KGDY-QIRRNLVTNLLWNI 313
Query: 466 LQDGIVIGDKHYEFLAFSASQLRNNSVWMF---ASNDEVSAEDVRGWMGC------FNK- 515
L GI I +K ++FL +S SQL++ S W ND + G NK
Sbjct: 314 LGYGISINNKTFKFLGYSNSQLKDRSFWFLRQAVENDLKLNSAIMSMYGIVAIPSNLNKK 373
Query: 516 --IRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDV--EVTSDGNTYCFSDGIGKISLS 571
+ V C ++ ++SS + + +++I D+ D + F+DG G IS
Sbjct: 374 EYLGEVLNCHGKVANNYTSSDFIIKLERNQIQVINDIVRHDYQDNRDFNFTDGNGLISQK 433
Query: 572 FARQVAQKCGLSHTPSAFQIRYGGYKGVIAVD-RNSFRKLSLRRSMLKFESRNRMLNVTK 630
+ + Q GL + S +Q+R GG KG + VD R +K+ LR SM+K ++ LN+ +
Sbjct: 434 LSNMINQHYGLKNC-SVYQVRIGGAKGTLTVDQRLKGKKVILRSSMIKLKNNITDLNIVQ 492
Query: 631 WSESMPCFLNREIISLLSTLGV-KDEVFEAMQQQQLILLGKMLINREAA------LDVLQ 683
++ + NR++I+L GV K+E FE +++ K L +A L L+
Sbjct: 493 CGKAGLGYSNRQVIALFEHDGVHKEEFFELIKKNIQYQFFKQLSQGQAQSVSYYDLAFLE 552
Query: 684 K----LNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLL 739
+ L G I K + Y+P + ++ + + + + + RIY+ +L
Sbjct: 553 QHLTHLVGAFKYFIRKKPEILRYDPLFQSIVNQL----KQEIMRQITEKGRIYMKNSVVL 608
Query: 740 IGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGD 799
+G D GIL ++F+++ +LE +Q +++G V+VT+NP LHP D
Sbjct: 609 LGVPDFLGILQENEIFLQIP-KYNDLEQGEQ---------YQVIRGDVVVTRNPALHPND 658
Query: 800 VRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEP 859
+R L AV + E + + ++F +G P +GGD DGD + I W+ ++
Sbjct: 659 IRKLVAV--DRPEFRYLRNAVVFSTQGSIPPSTMMAGGDHDGDRYLIIWERSIVNNFLAN 716
Query: 860 PMDYT----GRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADR-DPDKARSS 914
+ Y R + +++ + I V Y+ +D LG I + HL D P+ +
Sbjct: 717 QIRYKYFDPKRLMKKGRYNIQPQMIASSIVKYVRSDYLGLIDSMHLGLCDYLGPNHDFT- 775
Query: 915 KCLHLATLHSMAVDFAKTG-AP 935
L+L LH AVD++K G AP
Sbjct: 776 --LYLEYLHRQAVDYSKHGKAP 795
>gi|290988183|ref|XP_002676801.1| predicted protein [Naegleria gruberi]
gi|284090405|gb|EFC44057.1| predicted protein [Naegleria gruberi]
Length = 1650
Score = 149 bits (376), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 144/514 (28%), Positives = 238/514 (46%), Gaps = 66/514 (12%)
Query: 461 RILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWM---GCFNKIR 517
+I+ ++ I K Y + S S LR++ V+ F + + +V M G ++
Sbjct: 298 KIIDVVPASIECCGKEYRPVGGSLSMLRSDYVYFFDTTAMPACSEVDELMQIFGTYDSNL 357
Query: 518 SVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVA 577
+ K +R F+++K+T + + + D E+ DG+ +DGIGKIS S A+Q++
Sbjct: 358 NPFKLVSRHALNFTTTKETCTI--NKWKCVKD-ELAIDGSE--MTDGIGKISQSIAQQIS 412
Query: 578 QKCGLSHTPSAFQIRYGGYKGVIAV----DRNSFRKLSLRRSMLKF---ESRNRMLNVTK 630
+ GL P+A QIR+ G+KGV++V D + LR SM KF E N++ V+
Sbjct: 413 NQLGLVSVPTALQIRFLGFKGVLSVLPDEDLGDGMDVILRESMCKFNGKEELNKIELVSC 472
Query: 631 WSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDS 690
+ P +LN++II LL+TLG+ E F ++ L + + + + L VL++ N +D+
Sbjct: 473 TTARKPAYLNKQIILLLTTLGITKETFLSIFLDYFKDLSEKITSPKYFLKVLKE-NCMDT 531
Query: 691 KNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILN 750
++ L + + YL+ L+ +++ ++++ I + K + + DE L
Sbjct: 532 LPA-IQSLNEMPDDEFLQYLARYLIY---DEIKKVQTKAMIPIEKAVIAMSIVDEYKQLK 587
Query: 751 YGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMK 810
+V V++ D ++ ++D T +V + +NPCLHP D++
Sbjct: 588 ENEVMVQLG---------DGNY---IEDGT-----QVFICRNPCLHPSDIQTFTCRDNSL 630
Query: 811 LEEKDYVD--CIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCET---------EP 859
L K IIFP +G D DGD F+ WD+ LIP +
Sbjct: 631 LRSKYRPSNAAIIFPTQGY----TSIKICDFDGDRVFVCWDSRLIPDQVSNLSPLTHDNE 686
Query: 860 PMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHL 919
PM+ T S ++ LE LG IS A + A D + A S + L L
Sbjct: 687 PMESTTEHSEVLSK--ILEN----------GKLLGKISDAWV--AIVDSEGADSDRALEL 732
Query: 920 ATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMER 953
A L AVDF K G +P K +PDFMER
Sbjct: 733 ADLFVKAVDFPKNGKQISLPNWFKDIIYPDFMER 766
>gi|402594185|gb|EJW88111.1| hypothetical protein WUBG_00980 [Wuchereria bancrofti]
Length = 902
Score = 149 bits (375), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 139/523 (26%), Positives = 237/523 (45%), Gaps = 64/523 (12%)
Query: 283 CTTSEIVPLVKCRPGFNLSHEVLFQLNSLVHNQKVSLVAADAE-LIQILSGLSMETA--L 339
C T E + L +P + + L ++V +Q + V + E L+ I+ + A L
Sbjct: 362 CATEEAI-LQSDQPYQPVEPKTLLSRGAVVKDQLLQTVESRNEFLMHIVKSYEQDEAITL 420
Query: 340 MVLQKL----HKLKSICYDPVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVT 395
VL++L ++K+I +F + Q + + K + H+R D +A++T
Sbjct: 421 EVLERLINMVDEVKNIPPLISAFERIQNSIFVK--KELLAEIHERSADEGFQRVRKAVIT 478
Query: 396 PMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYR 455
P ++ + PEL N V++ F + +R+ F ++D + L + I
Sbjct: 479 PTRMLLVVPELLMGNRVLREFDESGDSALRIQFRDDDGAHLRRSRAGLYI---------- 528
Query: 456 TKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNK 515
I + I L G+ I D+H+ +LA S SQ+R+N + F + + +R +G F+
Sbjct: 529 --IETTIHNCLLRGVHISDRHFVYLASSNSQMRDNGCYFFNDGVDGKVKKIRDKLGKFDH 586
Query: 516 IRSVSKCAARMGQLFSSSKQT-LVVPVQDVEMIPDVEVTSD--GNTYCFSDGIGKISLSF 572
++ K +RMGQ F+ SK++ + + + DV D G + FSDG+GK+S F
Sbjct: 587 T-NIPKLMSRMGQCFTQSKESDVTLRRRKYNKTYDVIGGKDSCGEPFIFSDGVGKLSEDF 645
Query: 573 ARQVAQKCGLSH-TPSAFQIRYGGYKGVIAVD-----------RNSFRK----------- 609
A Q+A GL PS FQ RY G KGV++VD RN
Sbjct: 646 AEQIANDLGLGKCVPSCFQFRYRGLKGVLSVDPALRQRRLWAERNGLEDKHAKTEKVNDL 705
Query: 610 -LSLRRSMLKFES-RNRMLNVTKWSESMPCFLNREIISLLSTLG------VKDEV---FE 658
+ R S KF + R ++ + K+S +LNR +I++L + V +
Sbjct: 706 DILFRPSQDKFHAPRKEIIEIVKYSCPTFVYLNRPLINILDQVSDMQGFDVHSRIVNRIH 765
Query: 659 AMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHH 718
+ +QL+ L L++ + + L + N+ L +G+ EP+ +L++
Sbjct: 766 GLLDRQLLKLSDALMSEDRCRERLAEFP--RRINVQYLSLARGFTLTQEPFFHGLLIASV 823
Query: 719 ENQLSDLKSRCRIYVPK--GRLLIGCFDETGILNYGQVFVRVT 759
L S+ I +P GR + G DETG+L YGQVFV+ T
Sbjct: 824 RFALQKQLSKEHIQIPTNLGRTMFGILDETGLLQYGQVFVQFT 866
>gi|299740231|ref|XP_001838952.2| hypothetical protein CC1G_05505 [Coprinopsis cinerea okayama7#130]
gi|298404148|gb|EAU82883.2| hypothetical protein CC1G_05505 [Coprinopsis cinerea okayama7#130]
Length = 1214
Score = 148 bits (373), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 226/962 (23%), Positives = 380/962 (39%), Gaps = 186/962 (19%)
Query: 297 GFNLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPV 356
GF + E L + N L Q + ++ EL ++ + + +++K K ++ D
Sbjct: 261 GFQI--EALVRGNQLSFEQAIEIIPDIQELNKVHEKVGSRFVIQLVRKFSK--TMRTDFT 316
Query: 357 SFVKTQLHVLGRNCKSIPLSSH--KRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVK 414
K V ++ K +H ++ D + C+ TP + +GP N +++
Sbjct: 317 KQGKPPADVF-KDLKKKSFKAHPPRQDQDSKLFECHHVTCTPSRFILVGPNPTGFNRIIR 375
Query: 415 NFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGD 474
+ Y F+RV F +ED R F T + +RI +L+ GI I
Sbjct: 376 KYRDYTDHFIRVDFRDEDGQYF----------RSSFEVDASTLVKTRIGGVLKGGITIAG 425
Query: 475 KHYEFLAFSASQLRNNSVWM---FASNDE------VSAEDVRGWM-----GCFNKIRSVS 520
+H+EFLA+S+S ++ +S W F D V+A+ +R + +R+ S
Sbjct: 426 RHFEFLAYSSSSMKVHSTWFLNPFEFKDRTGQRIRVTAQRIREDIIPDIPANVQLMRTPS 485
Query: 521 KCAARMGQLFSSS---------KQTLVVPVQDV-------------------EMIPDVEV 552
K AAR+ F++S + V P D+ E D +
Sbjct: 486 KYAARIALAFTTSESVDGARLKRDEWVGPFPDIYPAVSHVKVRREEEQEEEGEGESDTDE 545
Query: 553 TSDGNTY----------CFSDGIGKISLSFA----RQVAQKCGL----SHTPSAFQIRYG 594
+ Y F+DG+G IS ++ +K GL + PSA+ +R
Sbjct: 546 EESADEYDPQFKMVKLPPFTDGVGSISKELNDRIWKEYYEKRGLEVHPNFYPSAWMLRML 605
Query: 595 GYKGVIAVD--RNSFRKLSLRRSMLKFESRN---------RMLNVTKWSESMPCFLNREI 643
GYKGV+AVD L LR+SM KFES R+ + + C+LNR
Sbjct: 606 GYKGVVAVDPEMEGPIHLRLRKSMHKFESLEDDLSQHSEVRIEIAEIYDKPGLCYLNRFY 665
Query: 644 ISLLSTL-----------------GVKDEVFEAMQQ-QQLILLGKMLINREAALDV---L 682
+ L + D E ++ Q++ + M I+ A++D L
Sbjct: 666 LPFFPHLHRLLITPVLFRPLVMMFDLHDRPLEVFEELQRMAVADAMTID--ASIDQFSRL 723
Query: 683 QKLNGVDSKNILVKMLLQGYEP---------NVEPYLSMMLLSHHENQLSDLKSRCRIYV 733
+++G+ + + LL+ E V P + + ++ ++ RI V
Sbjct: 724 MQMHGLGNP-FKITYLLEHVEALGLSLEELDQVSPLWKALRDVAFKTVMAGIRYEARIPV 782
Query: 734 PKGRLLIGCFDE----TGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLV 789
PK +L+G DE G Y V+ +DQ D + ++G +V
Sbjct: 783 PKSWVLVGVADEGPAYKGQPGYENVYCLPENCIFVCIQEDQ------DSEPEWLEGDCVV 836
Query: 790 TKNPCLHPGDVRVLEAVYE----MKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIF- 844
T+NP + PGD++ + A+ + +K +D + ++F +G R P+ +GGDLDGD +
Sbjct: 837 TRNPVVRPGDIQKVRAIGKPPRGVKCLFRDLKNVVVFSSQGRRSLPSCLAGGDLDGDKYA 896
Query: 845 FISWDNDLIPCETEPPMDYTGRRSRIMD--HDVTLEEIHKFFVDYMINDTLGAISTAHLV 902
I ++ L + S+ D V E+I FFV Y+ D L +
Sbjct: 897 VIQYEGLLTETYRREADPDEAKDSKFKDKARKVKPEDICDFFVQYVNRDVLDPFN----- 951
Query: 903 HADRDPDKARSSKCLHLATLHSMAVDFAKTGAP-----AEMPLALKPK--EFPDFMERE- 954
++ ++ +C LA L S AVD+ K G P E+ L+PK PD+ +R+
Sbjct: 952 --EKGYNQQGDDECSILAKLCSQAVDYPKKGIPIDLDNPEIKRILRPKITHKPDW-DRDG 1008
Query: 955 -----DKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEV---DGFEAF 1006
D Y S VLG LYR+ L N ++ + Y L + + EA
Sbjct: 1009 SSDMVDTIYYKSSRVLGHLYRSELFKDTDDPVNDAATDGPSPVPYSDRLSLAIKEAVEAI 1068
Query: 1007 LG----------VAESHKEM---YEEEMNALMNYYGAS-------TEDEILTGNLRNRAS 1046
G + + KE Y EE+ + + S E E+++G + R
Sbjct: 1069 FGQGFLPTVLSRLNDRVKEAFTHYAEELKYIRYAHSLSLRPDARLLEAEVISGTVLGRRD 1128
Query: 1047 YLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSCKENEHPQLASAWYHVTYSPSYCKER 1106
+ R M+D I +A ++ E ++N L AW YS KE
Sbjct: 1129 LKKLRKERISRMRDHIGSAASTVRLE----LMGGREDNRMETLERAWNAWGYSQEKFKEE 1184
Query: 1107 MA 1108
A
Sbjct: 1185 GA 1186
>gi|4138610|emb|CAA09895.1| RNA-directed RNA polymerase [Triticum aestivum]
Length = 107
Score = 147 bits (371), Expect = 3e-32, Method: Composition-based stats.
Identities = 62/107 (57%), Positives = 81/107 (75%)
Query: 829 PHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYM 888
PHPNECSG DLDGDI+F+SWD DLIP PMDYT + +DHDV +EE+H++F +Y+
Sbjct: 1 PHPNECSGSDLDGDIYFVSWDPDLIPTRMVAPMDYTPAPTETLDHDVMIEEVHEYFTNYI 60
Query: 889 INDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAP 935
+N++LG I+ AH+V ADR+ KA S+ C+ LA L S+AVDF KTG P
Sbjct: 61 VNESLGIIANAHVVFADREILKAESTPCIKLAELFSIAVDFPKTGVP 107
>gi|241083173|ref|XP_002409051.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
gi|215492624|gb|EEC02265.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
Length = 597
Score = 146 bits (369), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 108/342 (31%), Positives = 175/342 (51%), Gaps = 39/342 (11%)
Query: 391 RALVTPMKIYCLGPELETSNYVVKNF-AKYASDFMRVTFVEEDWSKLPANALSTSIQRGI 449
R VTP +++ L P L N V++ F +YA MRVTF +++ +L R +
Sbjct: 283 RLFVTPSRVFFLPPLLFRENRVLRRFNPEYA---MRVTFRDDNLQQL---------SRSL 330
Query: 450 FSKPYRTKIYSRIL-TILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAED-VR 507
R ++ I+ L++G+ +G++ ++FLA S SQLR++ W++A + + D +R
Sbjct: 331 MFHRRRDEMVDAIVGKFLREGVAVGNRRFKFLATSCSQLRDHGAWLYAEDSLGNTVDLIR 390
Query: 508 GWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQD--VEMIPDV---EVTSDGNTYCFS 562
WMG F+ I +++K ARMGQ FSS+ +TL VP++ V+M PD+ + FS
Sbjct: 391 TWMGDFSGIPNIAKKMARMGQCFSSTMETLKVPLKGDIVQMTPDIVGGRHPVSAKEFSFS 450
Query: 563 DGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRN-SFRKLSLRRSMLKFE- 620
DGIG IS S +IRY GYKG++ ++ KL LR SM KF+
Sbjct: 451 DGIGMISASLME---------------KIRYAGYKGMLCLNPCLQGDKLVLRPSMRKFDC 495
Query: 621 SRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALD 680
S + L + K S LNR +I++L LGV VF +QQ ++ L+ AL
Sbjct: 496 SSSDNLELVKVSAPRLVCLNRPLITILEQLGVPSRVFLCLQQSTVLQCTDALVCETTALQ 555
Query: 681 VLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQL 722
VL G +++ G+ +P++ +L + ++N +
Sbjct: 556 VLSGFGGTSLP--FAELVRGGFCLTRDPFVRSLLYAVYKNTM 595
>gi|440298585|gb|ELP91216.1| RNA-dependent RNA polymerase, putative [Entamoeba invadens IP1]
Length = 1008
Score = 146 bits (369), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 139/492 (28%), Positives = 224/492 (45%), Gaps = 57/492 (11%)
Query: 474 DKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGC---FNKIRSVSKCAARMGQLF 530
++ YEF + SQ R+ + W + D+++ +G KI++ R G
Sbjct: 300 NRRYEFFLSNPSQSRSGACWFIDNTDDITRVAAYNSLGIDLKSAKIKNSGILLMRAGLFG 359
Query: 531 SSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQV---AQKCGLS---- 583
S S T + Q ++ I DV T++G Y FSDG+G+ISLS A +V ++CG +
Sbjct: 360 SDSVATAGIYPQQIKRIEDV--TNEGG-YTFSDGVGRISLSLASKVFAEYRRCGENVIRV 416
Query: 584 HTPSAFQIRYGGYKGVIAVD-RNSFRKLSLRRSMLKFES---RNRMLNVTKWSESMPCFL 639
P+AFQIR+ G KGV++VD + + R S +K E+ R + L V + + +
Sbjct: 417 EEPAAFQIRFAGVKGVVSVDCLDKSENIYFRPSQIKIEAFPERVQKLRVVQIPQYRSGRM 476
Query: 640 NREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLL 699
N ++ L L + F ++ L + N E + + QK + I +KM++
Sbjct: 477 NEQLALGLEYLEIPIPNFIQCAKEYLRKYFTSIPNDEV-VRLFQKNAKNPTVAIALKMVM 535
Query: 700 Q-GYEPNV--EPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFV 756
G + + EP++ L LS+ + + L+G DETGIL GQVF+
Sbjct: 536 AAGRDSKIFEEPFVKANSLVLRMAMLSEKSDFIKFDIDNSAFLMGVMDETGILEEGQVFI 595
Query: 757 RVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKD- 815
+++ + + ++L K P HPGD +L V E L E+
Sbjct: 596 QLS-----------------SNSVFVPSSRLLAVKFPATHPGDFLLLRNVCENVLFERKR 638
Query: 816 ------YV-DCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIP---CETEPPMDYTG 865
Y+ D I+F KG RP PN+ +GGDLDGD + + W+ +P ++ PP +Y
Sbjct: 639 GYERLAYLKDVIVFSSKGYRPDPNKMAGGDLDGDEYLVIWNPLFLPKLGKKSHPPANYDF 698
Query: 866 RRS---RIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATL 922
+ R ++++ + H F L IST H + SK L+ L
Sbjct: 699 EETHLERFLEYN---DMKHAFVSQLYSKYVLAQISTCHKKACMSLGMQDEISKA--LSQL 753
Query: 923 HSMAVDFAKTGA 934
S+AVD KTGA
Sbjct: 754 ISVAVDAPKTGA 765
>gi|389743114|gb|EIM84299.1| RdRP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 1120
Score = 145 bits (367), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 134/499 (26%), Positives = 220/499 (44%), Gaps = 57/499 (11%)
Query: 465 ILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVR--GWMGCFNKIRSVSKC 522
++ +GI Y FL ++ SQL+ MF + + + +R G + + K
Sbjct: 93 VVHEGIQQDGHRYTFLGYTESQLKATQFMMFEGDKAATQKLLRTFGKLDAVYQKSGYGKY 152
Query: 523 AARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGL 582
AAR+G FSS+ L P V IPD+ V DG SDG G I S + G+
Sbjct: 153 AARLGLSFSSTAVGLDAPHSRVTEIPDL-VARDGT--LMSDGCGVIRDSVLAIICANRGI 209
Query: 583 SHTPSAFQIRYGGYKGVIAVDRNSF---------RKLSLRRSMLKFESRNRMLNVTKWSE 633
QIR+ G+KG++ ++F +++R SM K++ R L + S
Sbjct: 210 RRDTHCIQIRWNGHKGMLVGYPDAFCTDVLHMGENWIAVRPSMKKYDGRLTSLEINAVSH 269
Query: 634 -SMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKN 692
+ LN+ I LL T G+ + +QL L + +R+ A+++L+ G DS
Sbjct: 270 PAGSARLNKMYILLLLTAGIPAATIHELLNEQLEKLDLFMTDRDKAIEILE---GTDSAQ 326
Query: 693 I----------LVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGC 742
+ L + LL ++ + EPY+ ++L + + + L+ + I V LL G
Sbjct: 327 LDADGEGFNQELFEGLLASHDLS-EPYVKWLMLKYQKLRYRRLREKICIDVKLSWLLFGI 385
Query: 743 FDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRV 802
DE+ L +V++ + HR ++ G V+V + P PGD+RV
Sbjct: 386 VDESRTLKPDEVYIHMP--------------HR----DGVIIGWVVVCRTPAYAPGDMRV 427
Query: 803 LEAVYEMKLEEKDYVDCIIFPQKGERPHP--NECSGGDLDGDIFFISWDNDLIPCETE-- 858
+AV + +L + +CI+F P + SGGDLDGD F++ D L+P +
Sbjct: 428 FKAVSKPELLH--HTNCIVFSGHESCPRSVTDMISGGDLDGDKFWVCSDPRLVPKRSNIF 485
Query: 859 PPMDYTGRRSRIMDHDVTLEEIHKFFVDYMI----NDTLGAISTAHLVHADRDPDKARSS 914
PP + + +L+++ + +D + LG IS H PD A S
Sbjct: 486 PPSQRASPAAAVSSRKNSLKDMPQASIDTFVIQHGTSLLGQISRKWTAHTANHPDLAASE 545
Query: 915 KCLHLATLHSMAVDFAKTG 933
+ LA+ AVD KTG
Sbjct: 546 ESRKLASCFEAAVDLTKTG 564
>gi|255635133|gb|ACU17923.1| unknown [Glycine max]
Length = 290
Score = 145 bits (365), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 94/265 (35%), Positives = 132/265 (49%), Gaps = 31/265 (11%)
Query: 888 MINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEF 947
M+N+ LGAI AH+VHAD A KC+HLA L + AVDF KTG MP LKPK +
Sbjct: 1 MVNEHLGAICNAHVVHADSSDYGALDEKCIHLAELAATAVDFPKTGKLVTMPPHLKPKLY 60
Query: 948 PDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFL 1007
PDFM +E Y S +LG+LYR D+ + + YD DLEV G F+
Sbjct: 61 PDFMGKERHQSYRSKKILGRLYRRIKDAYDEDIDAPYLNFVTGGIPYDKDLEVPGSADFI 120
Query: 1008 GVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAK 1067
A K Y+ +++ L+ Y E+E++TG + + Y ++R+ G++K+R+ S
Sbjct: 121 ADAWEQKCSYDGQLSGLLGQYKVKREEEVVTGQIWSMPKY---NSRKQGELKERLKHSYS 177
Query: 1068 NLQNEAKEWF-------GSSCKENE---HPQLASAWYHVTYSPSYCKERMAL-------- 1109
L+ E + F G +E + + Q ASAWY VTY P + K+ + L
Sbjct: 178 ALKKEFRHTFEKLNSDVGELSEEEKNLFYEQKASAWYQVTYHPEWVKKSLDLQDKSSENQ 237
Query: 1110 ----------LSFPWIVGDILLNIK 1124
LSFPWI D L K
Sbjct: 238 EADSLGSTVMLSFPWIAVDYLARTK 262
>gi|401412157|ref|XP_003885526.1| hypothetical protein NCLIV_059230 [Neospora caninum Liverpool]
gi|325119945|emb|CBZ55498.1| hypothetical protein NCLIV_059230 [Neospora caninum Liverpool]
Length = 1367
Score = 144 bits (363), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 135/516 (26%), Positives = 221/516 (42%), Gaps = 101/516 (19%)
Query: 393 LVTPMKIYCLGPELETSNYVVKNFAKYASD--FMRVTFVEEDWSKLPANALSTSIQRGIF 450
L TP+K+ G E + V + +A+ + +RV FVEED +S+S+ R
Sbjct: 531 LATPLKVLVRGIYCELGSRVTRQYAREVATGLLVRVAFVEED-----GRPMSSSLHRA-- 583
Query: 451 SKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMF--ASNDEVSAEDVRG 508
+ R+ ++ G+ +G + Y+F A S SQLR WM + + +SAE +
Sbjct: 584 ---QDESLQERMRLMMVGGLSVGHERYKFFAASLSQLREGCCWMIRVSGDTRLSAEAILS 640
Query: 509 WMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTS-------------- 554
+G F+ S R+G FSS+ + + +++ +IPDV ++
Sbjct: 641 RLGVFDSSISPGVLTKRLGVCFSSTLPAIDIRDEEMLLIPDVTSSAAAPTAREEAAENEG 700
Query: 555 ------------DGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAV 602
D + F+DG G ISL R++ + HT SAFQIR GG KG++ +
Sbjct: 701 RQARARPIPLAVDSPEFVFTDGSGAISLDLWRRIVARLPALHTSSAFQIRLGGIKGMLVL 760
Query: 603 -----------DRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLG 651
S + + + +SM KF S +R L V +S P +LNR++I LL TLG
Sbjct: 761 HPAFPRPVPHHPAESLKHILVSQSMQKFHSSSRCLEVNDFSRRFPYYLNRQVILLLDTLG 820
Query: 652 VKDEVFEAMQQQQLILLGKMLINREAALDVLQKLN-----GVDS--KNILVKMLLQGYEP 704
V VFE +Q++ L L + + R A+ L L G+ S + L + L+G
Sbjct: 821 VGFPVFERLQKRMLQFL-RDVDTRAGAIKFLSTLAIDQNLGMSSFAQVCLDFIALRGRGA 879
Query: 705 NV--EPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGC-----------FDETGILNY 751
N+ P + L H + S P R+ G F + G+ +
Sbjct: 880 NLFGVPDFTHSLAYDHGWRSS----------PSARVFAGLPEVFVHVTRSPFSDEGMARH 929
Query: 752 GQVFVRVTMTREELESKDQSFFHRVDD---------KTSIVKGKVLVTKNPCLHPGDVRV 802
V + E +++ + R+ + +++G V V +NPCL PGD+++
Sbjct: 930 VAVATGKSWLSAEADAQAERARRRLGRFPGGSVAAFGSEVIQGVVAVCRNPCLFPGDIQL 989
Query: 803 LEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGD 838
AV L + ++ P G C GGD
Sbjct: 990 CFAVAHGDLPDDSP---LLRPLTG-------CLGGD 1015
>gi|66736429|gb|AAY54273.1| RNA-dependent RNA polymerase [Caenorhabditis remanei]
Length = 200
Score = 144 bits (363), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 80/204 (39%), Positives = 119/204 (58%), Gaps = 7/204 (3%)
Query: 733 VPK--GRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVT 790
+PK GR ++G DETG L YGQ+FV+ T E + H + +V G VL+T
Sbjct: 1 IPKELGRSMLGIVDETGRLQYGQIFVQYTRNSNEKLPPRSNMQHMKVQGSQVVTGTVLLT 60
Query: 791 KNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDN 850
KNPC+ GDVR+ EAV +L D ++FPQ G RPHP+E +G DLDGD + + WD
Sbjct: 61 KNPCIVTGDVRIFEAVDIPELHH--LCDVVVFPQHGPRPHPDEMAGSDLDGDEYSVIWDQ 118
Query: 851 DLIPCETEPPMDYTGRRSRI-MDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPD 909
L+ + E P D+T + + D ++ + +H+F+V Y+ D++G IS HL ++D+
Sbjct: 119 QLLLDKNEAPFDFTVEKKEMPYDREMIDQLMHEFYVKYLKLDSVGTISNNHLHNSDQYGL 178
Query: 910 KARSSKCLHLATLHSMAVDFAKTG 933
+R C+ LA + AVDF K+G
Sbjct: 179 NSRV--CMDLAKKNCQAVDFTKSG 200
>gi|67537240|ref|XP_662394.1| hypothetical protein AN4790.2 [Aspergillus nidulans FGSC A4]
gi|40741170|gb|EAA60360.1| hypothetical protein AN4790.2 [Aspergillus nidulans FGSC A4]
Length = 854
Score = 144 bits (362), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 125/454 (27%), Positives = 192/454 (42%), Gaps = 141/454 (31%)
Query: 407 ETSNYVVKNFAKYASDFMRVTFVE-EDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTI 465
+ SN V++ +A A +F+RV F + + ++ A +T ++ +RI
Sbjct: 232 DISNCVIRRYANLADNFLRVRFTDAKHIGRIHATVDNTM-----------DEVLTRIKRA 280
Query: 466 LQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAAR 525
L +GI IG YEFLAF S CF+ R++S C A
Sbjct: 281 LANGITIGSTRYEFLAFGNSS------------------------SCFSTTRAISGCTAH 316
Query: 526 MGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQ----KCG 581
V+ I D+E GN Y FSDG+G+IS A+ V K
Sbjct: 317 ------------------VKKIDDIE----GNGYIFSDGVGRISKFLAQIVKSELKIKTP 354
Query: 582 LSHTPSAFQIRYGGYKGVIAV-DRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLN 640
PSA+Q R G KG++ V + +++ +R+S KF + ++ L + +WS+ LN
Sbjct: 355 TKEPPSAYQFRLVGCKGMLIVFPQARPQEVHIRKSQFKFAALSQGLEIIRWSQFTVASLN 414
Query: 641 REIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQ 700
R++I +LSTLG+ D+VF + L ML N + A++ K LL+
Sbjct: 415 RQLILVLSTLGITDKVFH-------LKLKTMLRNLDEAMESDPK----------AAHLLR 457
Query: 701 GYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTM 760
Y V+P NQ++ IY+PK
Sbjct: 458 KY---VDP-----------NQVT-----LTIYLPKN------------------------ 474
Query: 761 TREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCI 820
+K I++G ++ +NP LHPG +RV+ AV L D +
Sbjct: 475 ----------------GEKYEIIEGICILARNPSLHPGGIRVVRAVNAPGLHH--LKDIV 516
Query: 821 IFPQKGERPHPNECSGGDLDGDIFFISWDNDLIP 854
+ P+ G+R + CSG DLDGD F + WD DL+P
Sbjct: 517 VLPRTGDRDIASMCSGSDLDGDDFLVIWDQDLLP 550
>gi|259482364|tpe|CBF76776.1| TPA: RNA-directed RNA polymerase (Sad-1), putative (AFU_orthologue;
AFUA_3G06790) [Aspergillus nidulans FGSC A4]
Length = 869
Score = 143 bits (361), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 125/454 (27%), Positives = 192/454 (42%), Gaps = 141/454 (31%)
Query: 407 ETSNYVVKNFAKYASDFMRVTFVE-EDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTI 465
+ SN V++ +A A +F+RV F + + ++ A +T ++ +RI
Sbjct: 247 DISNCVIRRYANLADNFLRVRFTDAKHIGRIHATVDNTM-----------DEVLTRIKRA 295
Query: 466 LQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAAR 525
L +GI IG YEFLAF S CF+ R++S C A
Sbjct: 296 LANGITIGSTRYEFLAFGNSS------------------------SCFSTTRAISGCTAH 331
Query: 526 MGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQ----KCG 581
V+ I D+E GN Y FSDG+G+IS A+ V K
Sbjct: 332 ------------------VKKIDDIE----GNGYIFSDGVGRISKFLAQIVKSELKIKTP 369
Query: 582 LSHTPSAFQIRYGGYKGVIAV-DRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLN 640
PSA+Q R G KG++ V + +++ +R+S KF + ++ L + +WS+ LN
Sbjct: 370 TKEPPSAYQFRLVGCKGMLIVFPQARPQEVHIRKSQFKFAALSQGLEIIRWSQFTVASLN 429
Query: 641 REIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQ 700
R++I +LSTLG+ D+VF + L ML N + A++ K LL+
Sbjct: 430 RQLILVLSTLGITDKVFH-------LKLKTMLRNLDEAMESDPK----------AAHLLR 472
Query: 701 GYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTM 760
Y V+P NQ++ IY+PK
Sbjct: 473 KY---VDP-----------NQVT-----LTIYLPKN------------------------ 489
Query: 761 TREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCI 820
+K I++G ++ +NP LHPG +RV+ AV L D +
Sbjct: 490 ----------------GEKYEIIEGICILARNPSLHPGGIRVVRAVNAPGLHH--LKDIV 531
Query: 821 IFPQKGERPHPNECSGGDLDGDIFFISWDNDLIP 854
+ P+ G+R + CSG DLDGD F + WD DL+P
Sbjct: 532 VLPRTGDRDIASMCSGSDLDGDDFLVIWDQDLLP 565
>gi|167375406|ref|XP_001733628.1| RNA-dependent RNA polymerase [Entamoeba dispar SAW760]
gi|165905172|gb|EDR30241.1| RNA-dependent RNA polymerase, putative [Entamoeba dispar SAW760]
Length = 1026
Score = 141 bits (356), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 131/496 (26%), Positives = 223/496 (44%), Gaps = 61/496 (12%)
Query: 475 KHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGC---FNKIRSVSKCAARMGQLFS 531
++++FL + SQ R+ + W + D + +G KI++ R G S
Sbjct: 338 RYFQFLLSNPSQSRSGACWFIDNQDGKTTMAAYQSLGIDLKSPKIKNAGILLMRTGLFGS 397
Query: 532 SSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGL-------SH 584
S T+ + Q +++I D+ ++ + Y FSDG+G+I A++V + S
Sbjct: 398 DSIATVGIYPQQIKVIDDI---TNESGYTFSDGVGRIGYPLAKKVLNEYKRNSNLFIKSD 454
Query: 585 TPSAFQIRYGGYKGVIAVDR-NSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCF----L 639
P AFQIR+ G KGV+ VDR + + R S +K E+ + + + + +P F +
Sbjct: 455 EPYAFQIRFAGVKGVLTVDRLDMTETIYFRPSQIKIEALPKTIQKLRVIQ-IPQFRSGRM 513
Query: 640 NREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLL 699
N ++ L L + F + +Q L + NRE + + Q+ + +KM++
Sbjct: 514 NEQLALGLEYLQIPPSNFISSAKQYLKKYFSVTPNREI-ISLFQRFTNNPVIEVALKMIM 572
Query: 700 QG------YEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQ 753
YE EP++ L + LS+ + + L+G DE+G+L G+
Sbjct: 573 ASNGNQKIYE---EPFIRATSLVLRMSLLSEKTDFIKFDIDNSAFLMGVMDESGLLEEGE 629
Query: 754 VFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYE-MKLE 812
VF++VT +I ++LV K P HPGD +L V + + LE
Sbjct: 630 VFIQVT-----------------SPTITIPSSRLLVVKFPATHPGDFVLLNNVVDKINLE 672
Query: 813 EKD------YV-DCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIP---CETEPPMD 862
+K Y+ D I+F KG RP PN+ SGGDLDGD + I W+ +P + PP
Sbjct: 673 KKKGYERLTYLRDVIVFSSKGNRPDPNKLSGGDLDGDEYLIIWNPLFLPKPEINSHPPAI 732
Query: 863 YTGRRSRIMDHDVTLEEIHKFFVDYMIND-TLGAISTAHLVHADRDPDKARSSKCLHLAT 921
Y + ++ + ++ + F+ + + L IS +H A +K L+
Sbjct: 733 YDSEKVH-LEKFLEFTDMKRAFLSQLYSKFVLSRISVSHKESCMNIGMCAEVTKS--LSQ 789
Query: 922 LHSMAVDFAKTGAPAE 937
L S+ VD KTGA +
Sbjct: 790 LISITVDAPKTGAEVD 805
>gi|183233879|ref|XP_651309.2| RNA-directed RNA polymerase [Entamoeba histolytica HM-1:IMSS]
gi|169801365|gb|EAL45936.2| RNA-directed RNA polymerase, putative [Entamoeba histolytica
HM-1:IMSS]
gi|449710750|gb|EMD49768.1| RNA-dependent RNA polymerase, putative [Entamoeba histolytica KU27]
Length = 1026
Score = 141 bits (356), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 131/496 (26%), Positives = 223/496 (44%), Gaps = 61/496 (12%)
Query: 475 KHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGC---FNKIRSVSKCAARMGQLFS 531
++++FL + SQ R+ + W + D + +G KI++ R G S
Sbjct: 338 RYFQFLLSNPSQSRSGACWFIDNQDGKTTMAAYQSLGIDLKSPKIKNAGILLMRTGLFGS 397
Query: 532 SSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGL-------SH 584
S T+ + Q +++I D+ ++ N Y FSDG+G+I A++V + S
Sbjct: 398 DSIATVGIYPQQIKVIDDI---TNENGYTFSDGVGRIGYPLAKKVLNEYKRNSNLFIKSD 454
Query: 585 TPSAFQIRYGGYKGVIAVDR-NSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCF----L 639
P AFQIR+ G KGV+ VDR + + R S +K E+ + + + + +P F +
Sbjct: 455 EPYAFQIRFAGVKGVLTVDRLDMTENIYFRPSQIKIEALPKTIQKLRVIQ-IPQFRSGRM 513
Query: 640 NREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLL 699
N ++ L L + F + +Q L + NRE + + Q+ + +K+++
Sbjct: 514 NEQLALGLEYLQIPPSNFISSAKQYLKKYFSVTPNREI-ISLFQRFTNNPVIEVALKIIM 572
Query: 700 QG------YEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQ 753
YE EP++ L + LS+ + + L+G DE+G+L G+
Sbjct: 573 ASNGNQKIYE---EPFIRATSLVLRMSLLSEKTDFIKFDIDNSAFLMGVMDESGLLEEGE 629
Query: 754 VFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYE-MKLE 812
VF++VT + +I ++LV K P HPGD +L V + + LE
Sbjct: 630 VFIQVTTS-----------------TVTIPSSRLLVVKFPATHPGDFVLLNNVVDKINLE 672
Query: 813 EKD------YV-DCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIP---CETEPPMD 862
+K Y+ D I+F KG RP PN+ SGGDLDGD + I W+ +P + P
Sbjct: 673 KKKGFERLTYLRDVIVFSSKGNRPDPNKLSGGDLDGDEYLIIWNPLFLPKPEIHSHAPAT 732
Query: 863 YTGRRSRIMDHDVTLEEIHKFFVDYMIND-TLGAISTAHLVHADRDPDKARSSKCLHLAT 921
Y + ++ + ++ + F+ + + L IS AH A +K L+
Sbjct: 733 YDSEKVH-LEKFLEFTDMKRAFLSQLYSKFVLSRISVAHKESCMNIGMCAEVTKS--LSQ 789
Query: 922 LHSMAVDFAKTGAPAE 937
L S+ VD KTGA +
Sbjct: 790 LISITVDAPKTGAEVD 805
>gi|313244084|emb|CBY14941.1| unnamed protein product [Oikopleura dioica]
Length = 784
Score = 140 bits (354), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 156/580 (26%), Positives = 238/580 (41%), Gaps = 115/580 (19%)
Query: 465 ILQDGIVIGDKH-----------YEFLAFSASQLRNNSVWM-------FASN-------- 498
IL+DG D H Y F A++ +Q+RN M + SN
Sbjct: 181 ILKDGFYCHDPHNQKNKKDSICLYRFFAYTPTQVRNRGCIMINYDSDMWDSNKLIDVEGY 240
Query: 499 -------DEVSAEDVR-------------------GWMGCFNKIRSVSKCAARMGQLFSS 532
D+++ VR + G FNKI+ VSK AAR+G L S
Sbjct: 241 SKLKREFDDLAKITVRVDRAEARYSLVKRALPYVWNYFGNFNKIKIVSKYAARIGLLMSP 300
Query: 533 SKQTLVVPVQDVEMIPDVEVTSDGNT--YCFSDGIGKISLSFARQVAQKCGLSH------ 584
+ T+ VP + D+ N Y F+DG G++ A K L H
Sbjct: 301 TAATIFVPDKKWAREKDIVGGPPKNPEKYEFTDGCGRMCTRVAEMFRDKLNLKHLYRHQG 360
Query: 585 ---TPSAFQIRYGGYKGVIAVD-------------RNSFRKLSLRRSMLKFESRN----- 623
PS Q R G KG+ D R+S K + +K R+
Sbjct: 361 AYCVPSVIQFRMMGCKGIFVHDPTLDDADKPWVMIRDSQWKFDWNMNTVKHLERDKDGNP 420
Query: 624 -RMLNVTKWSESMPCF---LNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAAL 679
R + V S P LN + + LL LG++D F +Q+ L + + +R AA
Sbjct: 421 GRAMGVCSNGFSRPFSFGKLNEQFVVLLDALGLEDNTFLNIQKDHFERLKRCMDDRIAAF 480
Query: 680 DVLQKLNGVDSKNILVKMLLQG-YEPNV--------EPYLSMMLLSHHENQLSDLKSRCR 730
++L +D ++L + Y P V +P + + ++K+
Sbjct: 481 EILSSEKRMDEADLLDRTDEDSPYPPEVINTLKRFRKPVFDLPSAKPDRREEKNIKNAA- 539
Query: 731 IYVP--KGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKG-KV 787
Y+P K R + G D +G L G+ FV++T EE+ K + + + G KV
Sbjct: 540 FYIPISKSRNVYGVADISGKLRKGECFVQITQY-EEVVDKKRGTSRKERRMLPLGNGAKV 598
Query: 788 LVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFP-------QKGERPHPNECSGGDLD 840
LV K P HPGD RVL+ + +L D I+FP +RPHP+E DLD
Sbjct: 599 LVNKCPTYHPGDFRVLQNTHVPELMH--LCDVIVFPVYDKVYNPDLKRPHPHEMHESDLD 656
Query: 841 GDIFFISWDNDLIPCETEPPMDYTGRR--SRIMDHDVTLEEIHKFFVDYMINDTLGAIST 898
GD +F+SWD LIP + E P + + I D ++T++++ + F +G I+
Sbjct: 657 GDEYFVSWDERLIPEKLEKPFPCPDKTIGANIKD-EITVQDLIREFT--ASEHLVGRINN 713
Query: 899 AHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEM 938
+ A A S++C LA L + +VD AK G E+
Sbjct: 714 LFIDWAKL--AGASSNECRQLAKLFNQSVDTAKHGGKVEI 751
>gi|405974296|gb|EKC38952.1| Putative RNA-dependent RNA polymerase SHL2 [Crassostrea gigas]
Length = 520
Score = 140 bits (354), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 97/267 (36%), Positives = 141/267 (52%), Gaps = 33/267 (12%)
Query: 382 IDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKL----- 436
+ N RA++TP ++ L E N +++ + A F+R+ + +ED+ K+
Sbjct: 248 VPKNYTMVRRAVLTPSRLILLSKEPVYFNRILRQYN--ADYFIRLVYRDEDFEKISGMKY 305
Query: 437 --PANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWM 494
P + L Q I +G I D+HYEFL S SQLR +S W
Sbjct: 306 RGPQHLLEDMKQHFI------------------NGFTIYDRHYEFLGCSNSQLREHSFWF 347
Query: 495 FASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTS 554
F+S D ++AE +R G K R V+ +R G FSSS TL + + E+ + +VT
Sbjct: 348 FSSYDGITAEFIRQSSGDLAKERCVASYVSRFGLCFSSSWNTLTIEEHE-EVRFEKDVTR 406
Query: 555 DGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRN---SFRKLS 611
+G YCF+DGIGKIS A +VA+ L+ PSAFQIRYGG KGVIA+D + + +
Sbjct: 407 NG--YCFTDGIGKISKRLAAKVAKSMDLNIVPSAFQIRYGGCKGVIAIDPSLGENREIIV 464
Query: 612 LRRSMLKFESRNRMLNVTKWSESMPCF 638
+R SM KFES ++ L V + S + CF
Sbjct: 465 IRESMKKFESNSKSLEVLQVSRPVFCF 491
>gi|407036402|gb|EKE38145.1| RNA-directed RNA polymerase, putative [Entamoeba nuttalli P19]
Length = 1026
Score = 139 bits (349), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 129/496 (26%), Positives = 219/496 (44%), Gaps = 61/496 (12%)
Query: 475 KHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGC---FNKIRSVSKCAARMGQLFS 531
++++FL + SQ R+ + W + D + +G KI++ R G S
Sbjct: 338 RYFQFLLSNPSQSRSGACWFIDNQDGKTTMAAYQSLGVDLKSPKIKNAGILLMRTGLFGS 397
Query: 532 SSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGL-------SH 584
S T+ + Q +++I D+ ++ N Y FSDG+G+I A++V + S
Sbjct: 398 DSIATVGIYPQQIKVIDDI---TNENGYTFSDGVGRIGYPLAKKVLNEYKRNSNLFIKSD 454
Query: 585 TPSAFQIRYGGYKGVIAVDR-NSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCF----L 639
P AFQIR+ G KGV+ VDR + + R S +K E+ + + + + +P F +
Sbjct: 455 EPYAFQIRFAGVKGVLTVDRLDMTENIYFRPSQIKIEALPKTIQKLRVIQ-IPQFRSGRM 513
Query: 640 NREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLL 699
N ++ L L + F + +Q L + NRE + + Q+ + +K+++
Sbjct: 514 NEQLALGLEYLQIPPSNFISSAKQYLKKYFSVTPNREI-ISLFQRFTNNPVIEVALKIIM 572
Query: 700 QG------YEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQ 753
YE EP++ L + LS+ + + L+G DE+G+L G+
Sbjct: 573 ASNGNQKIYE---EPFIRATSLVLRMSLLSEKTDFIKFDIDNSAFLMGVMDESGLLEEGE 629
Query: 754 VFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEE 813
VF++VT +I ++LV K P HPGD +L V + E
Sbjct: 630 VFIQVTTP-----------------TVTIPSSRLLVVKFPATHPGDFVLLNNVVDKINSE 672
Query: 814 KD-------YV-DCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIP---CETEPPMD 862
K Y+ D I+F KG RP PN+ SGGDLDGD + I W+ +P + P
Sbjct: 673 KKKGFERLTYLRDVIVFSSKGNRPDPNKLSGGDLDGDEYLIIWNPLFLPKPEIHSHAPAT 732
Query: 863 YTGRRSRIMDHDVTLEEIHKFFVDYMIND-TLGAISTAHLVHADRDPDKARSSKCLHLAT 921
Y + ++ + ++ + F+ + + L IS +H A +K L+
Sbjct: 733 YDSEKVH-LEKFLEFTDMKRAFLSQLYSKFVLSRISVSHKESCMNIGMCAEVTKS--LSQ 789
Query: 922 LHSMAVDFAKTGAPAE 937
L S+ VD KTGA +
Sbjct: 790 LISITVDAPKTGAEVD 805
>gi|402580635|gb|EJW74584.1| hypothetical protein WUBG_14509 [Wuchereria bancrofti]
Length = 168
Score = 136 bits (343), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 77/169 (45%), Positives = 105/169 (62%), Gaps = 11/169 (6%)
Query: 739 LIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPG 798
+ G DETG L +GQ+FV+ T L++ QS I+KGKV++TKNPC+ G
Sbjct: 1 MFGVMDETGQLQWGQIFVQCTRNIW-LKTPSQSA------AKIILKGKVMLTKNPCIVAG 53
Query: 799 DVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETE 858
DVRV EAV +L VD ++FPQ G RPHP+E +G DLDGD + + WD LI E
Sbjct: 54 DVRVFEAVDIPELHH--LVDVVVFPQHGPRPHPDEMAGSDLDGDEYSVIWDQKLIFEHNE 111
Query: 859 PPMDYTGRRS--RIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHAD 905
PP+D+T S +I+D E+ KFFV+Y+ D++G+IS A LV+AD
Sbjct: 112 PPLDFTKSTSGNKIIDEAQVDLEMRKFFVNYIKQDSIGSISNAFLVNAD 160
>gi|317031168|ref|XP_001392956.2| hypothetical protein ANI_1_2224074 [Aspergillus niger CBS 513.88]
Length = 1206
Score = 136 bits (342), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 117/224 (52%), Gaps = 20/224 (8%)
Query: 785 GKVLVTKNPCLHPGDVRVLEAVYEMKLEE-KDYVDCIIFPQKGERPHPNECSGGDLDGDI 843
G VLVT++P LH GD++ + V + + I+F KG R P++ SGGDLDGDI
Sbjct: 797 GMVLVTRSPALHDGDIQFAQNVIPPDNHPLAELTNSIVFSSKGYRDLPSQLSGGDLDGDI 856
Query: 844 FFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVH 903
F + WD D P T P DY + V +++ +FF+D+M D LG I+T H++
Sbjct: 857 FNVIWDTDAYPVRTFAPADYPRVSPVDIGRPVERDDMAQFFLDFMKTDHLGVIATRHMIM 916
Query: 904 ADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEF-PDFMEREDKPRYISF 962
AD++ + C LA LHS AVDF+KTG P +M K K F PDFM
Sbjct: 917 ADQEAEGTSHPVCRKLAQLHSTAVDFSKTGIPVQMSEIPKGKPFRPDFM----------- 965
Query: 963 GVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAF 1006
LG + R + +S+ E + +A+YD D +++ F +
Sbjct: 966 -ALGPVAR------IHNKSDIELEEYVIQAAYDEDDDMEPFHKY 1002
>gi|341879478|gb|EGT35413.1| hypothetical protein CAEBREN_30970 [Caenorhabditis brenneri]
Length = 1948
Score = 135 bits (340), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 132/491 (26%), Positives = 220/491 (44%), Gaps = 61/491 (12%)
Query: 609 KLSLRRSMLKFESRNR-----MLNVTKWSESMPCFLNREIISLLSTLGVKDEV------- 656
K R S +KF S + + KWS P LNR I++L + +
Sbjct: 902 KCLFRESQMKFHSSTGGKDKWPIELVKWSSPTPVTLNRPFINILDQVSALQSLDCHKRIC 961
Query: 657 --FEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQ-GYEPNVEPYLSMM 713
E + ++ +IN + KL G+ + + + G+ EP+ +
Sbjct: 962 GRIEELLDIEMDSFTDCIINEDKCR---SKLEGMPRRVHFPSLWRRNGFSLCTEPFFRAL 1018
Query: 714 LLSHHENQLSDLKSRCRIYVPK--GRLLIGCFDETGILNYGQVFVRVTMTREELESKDQS 771
+ + + + L + I +P GR + G DETG+L YGQVFV+ T E + +K S
Sbjct: 1019 IKAAIDFSMMRLLKKVNIPIPSNVGRSMFGVTDETGLLQYGQVFVQYT---ENVNNKHPS 1075
Query: 772 FF---------HRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIF 822
+ + K + G ++VTK P + GDVR+ EAV +L + V I+F
Sbjct: 1076 GVSGKILKGKSNFLSFKIQFISGPLMVTKFPSMCEGDVRMYEAVDIPELRHLENV--IVF 1133
Query: 823 PQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRR-SRIMDHDVTLEEIH 881
PQ G R P+E +G DLDGD + + WD L E Y + + ++ D E ++
Sbjct: 1134 PQNGPRSMPDEMAGSDLDGDEYAVIWDPFLFFERNETAFAYCNDKPEKKLNIDEMDEGMN 1193
Query: 882 KFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLA 941
F+ ++M + +G +T HL +D+ S C LA ++M +D++K+G A PL
Sbjct: 1194 VFYAEFMNQEDVGITATNHLHQSDQ--YGINSKVCNILAEKNAMLLDYSKSGV-APSPLT 1250
Query: 942 LKPKEFPDFM------EREDKP-----------RYISFGVLGKLYRATLDSIMQIRSNAI 984
+ P+ + E KP Y S +LG L+R L S+ + + +
Sbjct: 1251 FNWDKHPETKKWVPPEKSERKPDFANNRFSMNQTYQSSRLLGTLHRE-LRSVNDVVATS- 1308
Query: 985 WSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTG---NL 1041
+EK D L G+E + VAE+ Y + ++M +G +TE E+ +G +
Sbjct: 1309 -AEKQVPLVLDDLLVWTGWEQYKSVAEAQLLRYNGALRSIMETFGVNTEAEVFSGYYREI 1367
Query: 1042 RNRASYLQRDN 1052
RNR S ++D+
Sbjct: 1368 RNRQSDKEQDD 1378
>gi|134077480|emb|CAK40045.1| unnamed protein product [Aspergillus niger]
Length = 377
Score = 135 bits (339), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 101/305 (33%), Positives = 145/305 (47%), Gaps = 40/305 (13%)
Query: 787 VLVTKNPCLHPGDVRVLEAVYEMKLEE-KDYVDCIIFPQKGERPHPNECSGGDLDGDIFF 845
VLVT++P LH GD++ + V + + I+F KG R P++ SGGDLDGDIF
Sbjct: 2 VLVTRSPALHDGDIQFAQNVIPPDNHPLAELTNSIVFSSKGYRDLPSQLSGGDLDGDIFN 61
Query: 846 ISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHAD 905
+ WD D P T P DY + V +++ +FF+D+M D LG I+T H++ AD
Sbjct: 62 VIWDTDAYPVRTFAPADYPRVSPVDIGRPVERDDMAQFFLDFMKTDHLGVIATRHMIMAD 121
Query: 906 RDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEF-PDFMEREDKPRYISFGV 964
++ + C LA LHS AVDF+KTG P +M K K F PD Y S +
Sbjct: 122 QEAEGTSHPVCRKLAQLHSTAVDFSKTGIPVQMSEIPKGKPFRPDLYPFHKY--YRSEKI 179
Query: 965 LGKLYRAT---------LDSIMQIRSNAIWSE----------KIAEASYDHDLEVDGFEA 1005
LGKLYR + S +Q + W+E KI S+ E
Sbjct: 180 LGKLYRGVDERQIWQEDIQSKVQPNEDEFWNEFLWSTLERCDKIGNLSW---------EL 230
Query: 1006 FLGVAESHKEMYEEEMNALMNYYGAS-----TEDEILTGNLRNRA--SYLQRD-NRRYGD 1057
+L A + YEE + + N Y +E E+ G++ N+ + QRD + + D
Sbjct: 231 WLDEARHIRLRYEEAVFSARNNYSEHPIDPLSELEVFIGSVMNKGVQTRRQRDQSNKLAD 290
Query: 1058 MKDRI 1062
DRI
Sbjct: 291 EFDRI 295
>gi|403358446|gb|EJY78873.1| RNA-directed RNA polymerase [Oxytricha trifallax]
Length = 1379
Score = 130 bits (328), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 97/295 (32%), Positives = 144/295 (48%), Gaps = 32/295 (10%)
Query: 703 EPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTR 762
EP + LS M+L N LK + RI + LIG DETG L+ G++++++
Sbjct: 829 EPIFDSILSNMVLGLAVN----LKKKARIRIKNSCTLIGVIDETGTLDEGEIYLKINRGS 884
Query: 763 --------------EELESKDQSFFHRVDDKT---SIVKGKVLVTKNPCLHPGDVRVLEA 805
+E+E+ D + T I++G V+VTKNPC HPGD+R L A
Sbjct: 885 YDYDQIQEKLVDEYDEIENADGKKSRLAEINTWLDQIIEGDVIVTKNPCSHPGDIRKLRA 944
Query: 806 VYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPC--ETEPPMDY 863
V E E + I+F KG RP ++ SGGDLDGD++ WD L+ + E P Y
Sbjct: 945 VGEHSTFEH-LTNVIVFSSKGCRPEQHKMSGGDLDGDVYLCMWDESLVNALQKIEKPAVY 1003
Query: 864 TGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADR-DPDKARSSKCLHLATL 922
I D + I + +Y D LG ++ HL +D+ + + +C+ L+
Sbjct: 1004 KKFEESI-KTDSQKDTIVDYMAEYFEKDNLGHLAHLHLGLSDQLGVEGPYNKECVELSWY 1062
Query: 923 HSMAVDFAKTGAPAEMP----LALKPKEFPDFMEREDKPRYI--SFGVLGKLYRA 971
S+AVDFAK G + + K +PD+ME+ D R S +LG+LYRA
Sbjct: 1063 ISIAVDFAKHGKHVDKDKYEMIEKKLDRWPDYMEKNDIGRKTVESPLILGQLYRA 1117
Score = 129 bits (325), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 98/310 (31%), Positives = 146/310 (47%), Gaps = 32/310 (10%)
Query: 366 LGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMR 425
L +N I L + N + R TP + E +N V++ F KY +F R
Sbjct: 428 LEKNSGEITLEIQNETENDNDLRQRRIYQTPTLTLFFANQREQTNRVIRQFKKYKDNFFR 487
Query: 426 VTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSAS 485
+ V + +Q+ F + ++ + +++ + IGD + L +S S
Sbjct: 488 LVLVND------------QLQKFHFGSMKQKEMLQHMKDLMKQELYIGDSLAQVLNYSNS 535
Query: 486 QLRNNSVWMFASND--EVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQ-TLVVPVQ 542
QL+N+SVWM S E+ + +G F K AR GQ FS++K T + P
Sbjct: 536 QLKNHSVWMVCSTSIPEIQPNAIISRLGTFTNEGGNLKMFARRGQCFSTTKYVTKLDPDS 595
Query: 543 DVEMIPDVEV--------------TSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSA 588
+VE+I D+E +GN Y F+DG G IS A ++AQ L SA
Sbjct: 596 NVEVIEDIERPKKNDPDLAQAEPDQREGN-YVFTDGCGNISELLASEIAQSHQLMKC-SA 653
Query: 589 FQIRYGGYKGVIAVDRN-SFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLL 647
FQ+R GG KGV+ + + RK+ LR+S +KF N L V + S +LNR++I LL
Sbjct: 654 FQVRIGGVKGVLMLKPDLDGRKVQLRKSQIKFACENWGLEVIRCSTFSQGYLNRQVILLL 713
Query: 648 STLGVKDEVF 657
S LGV D VF
Sbjct: 714 SCLGVDDNVF 723
>gi|403337310|gb|EJY67868.1| RNA-directed RNA polymerase [Oxytricha trifallax]
Length = 1352
Score = 130 bits (327), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 97/295 (32%), Positives = 144/295 (48%), Gaps = 32/295 (10%)
Query: 703 EPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTR 762
EP + LS M+L N LK + RI + LIG DETG L+ G++++++
Sbjct: 802 EPIFDSILSNMVLGLAVN----LKKKARIRIKNSCTLIGVIDETGTLDEGEIYLKINRGS 857
Query: 763 --------------EELESKDQSFFHRVDDKT---SIVKGKVLVTKNPCLHPGDVRVLEA 805
+E+E+ D + T I++G V+VTKNPC HPGD+R L A
Sbjct: 858 YDYDQIQEKLVDEYDEIENADGKKSRLAEINTWLDQIIEGDVIVTKNPCSHPGDIRKLRA 917
Query: 806 VYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPC--ETEPPMDY 863
V E E + I+F KG RP ++ SGGDLDGD++ WD L+ + E P Y
Sbjct: 918 VGEHSTFEH-LTNVIVFSSKGCRPEQHKMSGGDLDGDVYLCMWDESLVNALQKIEKPAVY 976
Query: 864 TGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADR-DPDKARSSKCLHLATL 922
I D + I + +Y D LG ++ HL +D+ + + +C+ L+
Sbjct: 977 KKFEESI-KTDSQKDTIVDYMAEYFEKDNLGHLAHLHLGLSDQLGVEGPYNKECVELSWY 1035
Query: 923 HSMAVDFAKTGAPAEMP----LALKPKEFPDFMEREDKPRYI--SFGVLGKLYRA 971
S+AVDFAK G + + K +PD+ME+ D R S +LG+LYRA
Sbjct: 1036 ISIAVDFAKHGKHVDKDKYEMIEKKLDRWPDYMEKNDIGRKTVESPLILGQLYRA 1090
Score = 100 bits (248), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 87/310 (28%), Positives = 132/310 (42%), Gaps = 59/310 (19%)
Query: 366 LGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMR 425
L +N I L + N + R TP + E +N V++ F KY +F R
Sbjct: 428 LEKNSGEITLEIQNETENDNDLRQRRIYQTPTLTLFFANQREQTNRVIRQFKKYKDNFFR 487
Query: 426 VTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSAS 485
+ V + +Q+ F + ++ + +++ + IGD + L +S S
Sbjct: 488 LVLVND------------QLQKFHFGSMKQKEMLQHMKDLMKQELYIGDSLAQVLNYSNS 535
Query: 486 QLRNNSVWMFASND--EVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQ-TLVVPVQ 542
QL+N+SVWM S E+ + +G F K AR GQ FS++K T + P
Sbjct: 536 QLKNHSVWMVCSTSIPEIQPNAIISRLGTFTNEGGNLKMFARRGQCFSTTKYVTKLDPDS 595
Query: 543 DVEMIPDVEV--------------TSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSA 588
+VE+I D+E +GN Y F+DG C
Sbjct: 596 NVEVIEDIERPKKNDPDLAQAEPDQREGN-YVFTDG---------------C-------- 631
Query: 589 FQIRYGGYKGVIAVDRN-SFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLL 647
GG KGV+ + + RK+ LR+S +KF N L V + S +LNR++I LL
Sbjct: 632 -----GGVKGVLMLKPDLDGRKVQLRKSQIKFACENWGLEVIRCSTFSQGYLNRQVILLL 686
Query: 648 STLGVKDEVF 657
S LGV D VF
Sbjct: 687 SCLGVDDNVF 696
>gi|403374620|gb|EJY87268.1| RNA-directed RNA polymerase [Oxytricha trifallax]
Length = 1352
Score = 130 bits (327), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 97/295 (32%), Positives = 144/295 (48%), Gaps = 32/295 (10%)
Query: 703 EPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTR 762
EP + LS M+L N LK + RI + LIG DETG L+ G++++++
Sbjct: 802 EPIFDSILSNMVLGLAVN----LKKKARIRIKNSCTLIGVIDETGTLDEGEIYLKINRGS 857
Query: 763 --------------EELESKDQSFFHRVDDKT---SIVKGKVLVTKNPCLHPGDVRVLEA 805
+E+E+ D + T I++G V+VTKNPC HPGD+R L A
Sbjct: 858 YDYDQIQEKLVDEYDEIENADGKKSRLAEINTWLDQIIEGDVIVTKNPCSHPGDIRKLRA 917
Query: 806 VYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPC--ETEPPMDY 863
V E E + I+F KG RP ++ SGGDLDGD++ WD L+ + E P Y
Sbjct: 918 VGEHSTFEH-LTNVIVFSSKGCRPEQHKMSGGDLDGDVYLCMWDESLVNALQKIEKPAVY 976
Query: 864 TGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADR-DPDKARSSKCLHLATL 922
I D + I + +Y D LG ++ HL +D+ + + +C+ L+
Sbjct: 977 KKFEESI-KTDSQKDTIVDYMAEYFEKDNLGHLAHLHLGLSDQLGVEGPYNKECVELSWY 1035
Query: 923 HSMAVDFAKTGAPAEMP----LALKPKEFPDFMEREDKPRYI--SFGVLGKLYRA 971
S+AVDFAK G + + K +PD+ME+ D R S +LG+LYRA
Sbjct: 1036 ISIAVDFAKHGKHVDKDKYEMIEKKLDRWPDYMEKNDIGRKTVESPLILGQLYRA 1090
Score = 100 bits (248), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 87/310 (28%), Positives = 132/310 (42%), Gaps = 59/310 (19%)
Query: 366 LGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMR 425
L +N I L + N + R TP + E +N V++ F KY +F R
Sbjct: 428 LEKNSGEITLEIQNETENDNDLRQRRIYQTPTLTLFFANQREQTNRVIRQFKKYKDNFFR 487
Query: 426 VTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSAS 485
+ V + +Q+ F + ++ + +++ + IGD + L +S S
Sbjct: 488 LVLVND------------QLQKFHFGSMKQKEMLQHMKDLMKQELYIGDSLAQVLNYSNS 535
Query: 486 QLRNNSVWMFASND--EVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQ-TLVVPVQ 542
QL+N+SVWM S E+ + +G F K AR GQ FS++K T + P
Sbjct: 536 QLKNHSVWMVCSTSIPEIQPNAIISRLGTFTNEGGNLKMFARRGQCFSTTKYVTKLDPDS 595
Query: 543 DVEMIPDVEV--------------TSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSA 588
+VE+I D+E +GN Y F+DG C
Sbjct: 596 NVEVIEDIERPKKNDPDLAQAEPDQREGN-YVFTDG---------------C-------- 631
Query: 589 FQIRYGGYKGVIAVDRN-SFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLL 647
GG KGV+ + + RK+ LR+S +KF N L V + S +LNR++I LL
Sbjct: 632 -----GGVKGVLMLKPDLDGRKVQLRKSQIKFACENWGLEVIRCSTFSQGYLNRQVILLL 686
Query: 648 STLGVKDEVF 657
S LGV D VF
Sbjct: 687 SCLGVDDNVF 696
>gi|253743974|gb|EET00246.1| RNA-directed RNA polymerase, putative [Giardia intestinalis ATCC
50581]
Length = 1989
Score = 129 bits (324), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 125/450 (27%), Positives = 193/450 (42%), Gaps = 113/450 (25%)
Query: 509 WMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKI 568
W+G +++++ C R G F S T+ V QDV +IPD + + Y F+DG G+I
Sbjct: 429 WLGTISELQACKICT-RRGLCFGKSLPTIKVKEQDVHIIPDRQY----HDYVFTDGAGEI 483
Query: 569 SLSFARQVA--------------QKCG-----------------------------LSHT 585
S ++A + G LS++
Sbjct: 484 SYDLMLEIAVCLDQIKTEQLNTNRDIGNFSDYNDDNEGEDGGTEDATLDLQTDLKVLSNS 543
Query: 586 ---PSAFQIRYGGYKGVIAVDRNSF---RKLSLRRSMLKFESRN-----RMLNVTKWSES 634
PSA Q+R+ G KGV+ + N+ R + L +S +KF N + L V + +
Sbjct: 544 IQVPSALQMRWAGAKGVLIL--NALLPPRTILLHKSQVKFTIPNPTETQQTLEVLRVAYP 601
Query: 635 MPCFLNREIISLLSTLGVKDEVFEAMQ----QQQLILLGKMLINREAA--LDVLQKLNGV 688
+N +II LLS +GV DEVF + Q+ L+ M R A ++ + +
Sbjct: 602 SRGMINMQIIVLLSEMGVPDEVFLNLVHQDLQKALVFSEPMDRCRHQADLYQLVSRASRS 661
Query: 689 DSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGI 748
S ++++ML+ G + EP L +L+ QL +K+ R VP R+LIG +D +
Sbjct: 662 SSGKLILQMLMAGVDI-TEPCLQFVLMKLQMMQLRSMKANMRFSVPDSRILIGIYDCFNL 720
Query: 749 LNYGQVFVRVTM----------------------TREELESKDQSFFHRVDDKTSIVKGK 786
L G+V++ + T L S F + S V+G+
Sbjct: 721 LKEGEVYIGLQSPLVISKWVASTHLKAISDAQHDTSISLSSHPHIFDMASEFGPSCVEGR 780
Query: 787 VLVTKNPCLHPGDVRVLEAVY---EMKLEEKD-------------------YVDCIIFPQ 824
V+V KNPC + GDVRV +AV +K E + Y I FPQ
Sbjct: 781 VVVAKNPCFYRGDVRVYQAVNLLERLKREASEKTLVPSLPPFVTQEAIKAMYKGVICFPQ 840
Query: 825 KGE-RPHPNECSGGDLDGDIFFISWDNDLI 853
E RP + SG DLDGDI+++SWD +I
Sbjct: 841 YYEGRPMADCLSGSDLDGDIYWVSWDASII 870
>gi|397614211|gb|EJK62661.1| hypothetical protein THAOC_16717 [Thalassiosira oceanica]
Length = 540
Score = 127 bits (320), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 109/366 (29%), Positives = 163/366 (44%), Gaps = 81/366 (22%)
Query: 738 LLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHP 797
+L+G DETG+L Q+F++V+ + E+ ++ ++ G+V+V K+P +HP
Sbjct: 11 VLMGGIDETGLLEENQIFIQVS--KHTKENNKPAY--------EVITGRVMVAKHPVIHP 60
Query: 798 GDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCET 857
GD+R+LEAV +L + + ++F Q G RP N SG DLDGD F I WD L +T
Sbjct: 61 GDLRMLEAVDLPEL--RGVKNVVLFSQHGHRPVTNMMSGSDLDGDEFAICWDRRLFLPKT 118
Query: 858 EPPMDYTGRRS--------RIMDHD---VTLEEIHKFFVDYMINDTLGAISTAHLVHADR 906
M Y +++ + T E + + F+++ ND LG IS L HA
Sbjct: 119 VEAMSYDSHSPDETGLLPLSVLEEEFGVTTNEALVRHFINHAKNDNLGKISMLWLDHA-I 177
Query: 907 DPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALK-PKEFPDFMERE---DKPRYISF 962
D A S+CL LA LHS++VDF K+ PA++P L FP RE P +
Sbjct: 178 DKGSASCSECLELAALHSISVDFPKSSIPAKLPDRLVLGSTFPRAHWREKAGGSPSFHCR 237
Query: 963 GVLGKLYRATLDSIM----QIRSNAIWS-------------------------EKIAEA- 992
++G+LY L + Q S+ W EKI A
Sbjct: 238 SIVGRLYDNVLHELKVMSDQDESSFNWGGGSDKDAMAGRYRDRNGQIIMQGNEEKILRAK 297
Query: 993 -------------------SYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTE 1033
S D+DL L A + +E+E+ LMN Y +E
Sbjct: 298 KSLFDPSLVHRLGWSMDGKSQDYDLH----RCLLDFALEQRNDFEDELVELMNQYHIKSE 353
Query: 1034 DEILTG 1039
E++TG
Sbjct: 354 GEVVTG 359
>gi|405974297|gb|EKC38953.1| Translocon-associated protein subunit beta [Crassostrea gigas]
Length = 1284
Score = 127 bits (319), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 127/244 (52%), Gaps = 24/244 (9%)
Query: 391 RALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPA---NALSTSIQR 447
R ++TP K E N +++ +A+ F+R+ F +ED+ K+ A N+L + I
Sbjct: 463 RIVLTPTKHVFYPKEPIVQNRIIRQYAEEY--FIRIVFRDEDYEKVSAIAPNSLDSVIDA 520
Query: 448 GIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVR 507
+ L G I + YEFL S SQLR + W F ND+ +A+ +R
Sbjct: 521 --------------MKQFLCAGFRILTRRYEFLGCSNSQLREHGFWFFCPNDDTNAQMIR 566
Query: 508 GWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGK 567
G R V+ +R G FS+S+ T+ V +QD E++ ++ + N YCFSDGIGK
Sbjct: 567 DNCGDIYLERCVASYVSRFGLCFSASRDTVDVGMQDGELVHQKDI--EWNNYCFSDGIGK 624
Query: 568 ISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSFRK---LSLRRSMLKFESRNR 624
IS A +V + G PSAFQIRYGG KGV++ D + + L +R SM KF S ++
Sbjct: 625 ISPCLANKVTKALGYKVKPSAFQIRYGGCKGVVSQDPDLGEEKDVLVIRESMNKFNSESK 684
Query: 625 MLNV 628
L +
Sbjct: 685 KLEI 688
>gi|402584478|gb|EJW78419.1| hypothetical protein WUBG_10674, partial [Wuchereria bancrofti]
Length = 355
Score = 126 bits (316), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 97/342 (28%), Positives = 164/342 (47%), Gaps = 55/342 (16%)
Query: 835 SGGDLDGDIFFISWDNDLIPCETEPPMDYTG--RRSRIMDHDVTLEEIHKFFVDYMINDT 892
+G DLDGD + + WD+ ++ E PMD++ R I+ D + E+ +F+V+Y++ D+
Sbjct: 2 AGSDLDGDEYSVIWDDQMLFSYNEEPMDFSKLVRPPDILKEDEVVREMRRFYVEYVMQDS 61
Query: 893 LGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAP-------------AEMP 939
+G I+ A LV++D S C+ +A HS +VDF KTG P +M
Sbjct: 62 IGIIANAFLVNSDT--FGIASDVCMSIAEKHSQSVDFPKTGQPPKPLVKEWSSRPDGKMI 119
Query: 940 LALKPKEFPDFMEREDKPRYISFGVLGKLYRAT--LDSIMQIRSNAIWSEKIAEASYDHD 997
+P+ +PDFM + +P Y+S ++G+L+R +D ++ I S + +E D
Sbjct: 120 PPERPERWPDFMCKTHEPSYVSTRLVGQLFRRIRLIDDVLTITST---HKAQSEVKVDPL 176
Query: 998 LEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTG---NLRNRASYLQRDNRR 1054
LE G+E++ A + Y + ALM+ YG E ++ +G +RNR S RD
Sbjct: 177 LEYIGWESYENDAVLNLTAYSAHIRALMDNYGIEDEYQLYSGCFCKIRNRIS--DRDGDD 234
Query: 1055 YGDMKDRILLSAK----------NLQNEAKEWFGSSCKENE-------------HPQL-- 1089
++ K N E ++ + ++++ +P +
Sbjct: 235 MSQFNTSFIIERKLTNIFMCFRCNFFAEFGDFMFCTEQDDDLRNKDVIERRYCKYPTVEM 294
Query: 1090 ---ASAWYHVTYSPSYCKERMALLSFPWIVGDILLNIKSVNS 1128
ASA+Y V Y + ++ LLSFPWI DIL +IK N+
Sbjct: 295 KRKASAYYIVCYRKAMKEKGERLLSFPWIAWDILADIKKENT 336
>gi|361130100|gb|EHL01954.1| putative RNA-dependent RNA polymerase 2 [Glarea lozoyensis 74030]
Length = 263
Score = 125 bits (315), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 100/172 (58%), Gaps = 19/172 (11%)
Query: 696 KMLLQGYEPNVEPYLSMMLLSHHENQLSDL-KSRCRIYVPKGRLLIGCFDETGILNYGQV 754
K+L+ G+E V+P L+ ++ S ++ ++ + RCRI +PK RLL G D G+L G+
Sbjct: 92 KVLIDGFE-TVQPTLTKLVNSEYDRMINKRDEQRCRILIPKSRLLFGICDAWGVLKEGEC 150
Query: 755 FVRVTMTREELESKDQSFFHRVDDKTSIVKG-KVLVTKNPCLHPGDVRVLEAVYEMKLEE 813
V+VTM D + +KG VLVT+NPCLHPGD++ +AV +L
Sbjct: 151 AVKVTMDG--------------DGQPYTLKGMDVLVTRNPCLHPGDLQKFKAVERDELAH 196
Query: 814 KDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTG 865
VDCI+FP +G RP + SGGDLDGD FF+ WD+DLIP + Y G
Sbjct: 197 --LVDCIVFPTRGARPAADLMSGGDLDGDTFFVCWDSDLIPEKVSEAAQYPG 246
Score = 50.8 bits (120), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 38/62 (61%), Gaps = 9/62 (14%)
Query: 547 IPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLS-----HTPSAFQIRYGGYKGVIA 601
IPD+E Y F+DG G IS AR++++ ++ +TPS FQIRY GYKGV+
Sbjct: 11 IPDIE----AQDYVFTDGCGLISKHLARELSRVLRVAFRNTRYTPSVFQIRYRGYKGVLM 66
Query: 602 VD 603
+D
Sbjct: 67 LD 68
>gi|402468935|gb|EJW04011.1| hypothetical protein EDEG_01705 [Edhazardia aedis USNM 41457]
Length = 1964
Score = 125 bits (315), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 117/222 (52%), Gaps = 48/222 (21%)
Query: 501 VSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYC 560
V A+ +R W+G F+ I+++ K A R+GQ SS+ T + + ++ I D N YC
Sbjct: 1257 VGADYIRQWLGTFSTIKNIGKYAIRLGQALSSTIGT--IEIDNLVCIDDKFF----NGYC 1310
Query: 561 FSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIA------------------- 601
F+DGIG+I S A++V + G+ + PSAFQIR GGYKGV++
Sbjct: 1311 FTDGIGRIDYSTAKKVCECLGIINIPSAFQIRIGGYKGVVSLYKLKNNNEEKKLKNIIYS 1370
Query: 602 -----------VDRNS------FRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREII 644
+D NS L +R SM KFES +R L V +S+++PC+LNR+II
Sbjct: 1371 SNTNTNLNSTNIDTNSNISLVQSNSLYVRNSMKKFESTHRTLEVVAFSQNIPCYLNRQII 1430
Query: 645 SLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLN 686
+L LG+ D + MQ + K+ IN+ L ++QK N
Sbjct: 1431 LILCALGINDNIIIEMQDN---YIEKIAINK---LQIIQKYN 1466
Score = 50.1 bits (118), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 58/108 (53%), Gaps = 15/108 (13%)
Query: 387 MSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQ 446
+S +VTP++ P N V++ F A F+RV+F +E+ TS++
Sbjct: 1091 ISTRSIIVTPLQQIYTYPTKTLGNRVLRTFN--ADFFIRVSFKDENL---------TSVR 1139
Query: 447 RGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWM 494
+ +K I+ +I I+++G +IG++ Y FLA SASQL+ +S W
Sbjct: 1140 KYDSNKF----IFEKIRKIMKEGFLIGNRKYFFLAMSASQLKTHSAWF 1183
Score = 41.2 bits (95), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 26/43 (60%)
Query: 727 SRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKD 769
S+ +I++ KGRLLIG DE +L QVF+R + E KD
Sbjct: 1709 SKSKIFICKGRLLIGILDEYDVLEENQVFIRFSNCGNECVEKD 1751
>gi|159120120|ref|XP_001710276.1| RNA-directed RNA polymerase, putative [Giardia lamblia ATCC 50803]
gi|21666386|gb|AAM73688.1|AF393743_1 RNA dependent RNA polymerase [Giardia intestinalis]
gi|157438394|gb|EDO82602.1| RNA-directed RNA polymerase, putative [Giardia lamblia ATCC 50803]
Length = 2001
Score = 124 bits (312), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 125/479 (26%), Positives = 198/479 (41%), Gaps = 118/479 (24%)
Query: 509 WMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKI 568
W+G ++++ C R G F S T+ V +DV+++ D E N Y F+DG G+I
Sbjct: 428 WLGDIKEVQACKICT-RRGLCFGKSLPTIKVREEDVQIVSDKEY----NGYVFTDGAGEI 482
Query: 569 SLSFARQVA------------------------------------------QKCGLSHTP 586
S ++A L P
Sbjct: 483 SYDLMLEIALCLDKLKIEQLHKDTETYYDNGFADTNEDSEHTVPHLQPNLKTASNLIQVP 542
Query: 587 SAFQIRYGGYKGVIAVDRNSF---RKLSLRRSMLKFESRN-----RMLNVTKWSESMPCF 638
SA Q+R+ G KGV+ + N+ R + +S +KF N + L + + ++
Sbjct: 543 SAVQMRWAGTKGVLIL--NALLPPRTILFHKSQVKFSIPNPTETQQTLEILRVAQPSKGM 600
Query: 639 LNREIISLLSTLGVKDEVFEAMQ----QQQLILLGKMLINREAA--LDVLQKLNGVDSKN 692
+N +II LLS +GV D+VF + Q+ L+ L + R A ++ + + S
Sbjct: 601 INMQIIVLLSEMGVPDDVFLNLVYQDLQKTLLFLEPVDRCRHQADLYQLVSRASHSSSGK 660
Query: 693 ILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYG 752
++++ML+ G + EP L +L+ QL +K+ R YVP R+ +G +D +L G
Sbjct: 661 LILQMLMAGVD-ITEPCLQFLLMKLQMMQLRSMKANMRFYVPDSRIFVGVYDCFDLLKEG 719
Query: 753 QVFVRVT--------------------MTREELESKDQSFFHRVDD-----KTSIVKGKV 787
+V+V + +E L D ++ D S V+G+V
Sbjct: 720 EVYVGLQEPLSISKWAAATHLKAMSNDTQQEALLPPDLDL--QISDIAVGLNISCVEGRV 777
Query: 788 LVTKNPCLHPGDVRVLEAV--YEMKLEEKD--------------------YVDCIIFPQK 825
+V KNPC + GDVR+ AV +E E Y I FP+
Sbjct: 778 VVAKNPCFYRGDVRIYHAVNIFERLRREASRQNLKPVLPSFVAQEAIRGMYRGVICFPKY 837
Query: 826 GE-RPHPNECSGGDLDGDIFFISWDNDL---IPCETEPPMDYTGRRSRIMDHDVTLEEI 880
E RP + SG DLDGDI+++SWD L I E E P + I H + L +I
Sbjct: 838 YEGRPMTDCLSGSDLDGDIYWVSWDASLLGTIQREYE-PASFQANPGEIDAHALDLRDI 895
>gi|241168347|ref|XP_002410232.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
gi|215494759|gb|EEC04400.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
Length = 632
Score = 124 bits (310), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 116/424 (27%), Positives = 190/424 (44%), Gaps = 78/424 (18%)
Query: 725 LKSRCRIYVP--KGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSI 782
L++R RI VP KGR ++G DET L YG+
Sbjct: 2 LRTRTRIAVPPNKGRNMLGVVDETYSLEYGE----------------------------- 32
Query: 783 VKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGD 842
V V P L+ ++K+ ++G R +G DLDGD
Sbjct: 33 ----VFVQYTP---------LDTTAGQGAQKKE--------EEGSR-RAQILTGSDLDGD 70
Query: 843 IFFISWDNDLI-PCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHL 901
+ + W+ DL P + PM ++ S ++ + +F +Y+ ND +G +S AHL
Sbjct: 71 EYIVIWEEDLFFPGCNKQPMVFSDSSSTATSNNSL--GMIQFVCNYIKNDNVGIMSNAHL 128
Query: 902 VHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMERED-KPRYI 960
AD++ D S +CL +A S +DFAKTG A + KP ++PDFME+ K Y
Sbjct: 129 AWADKEGDGIFSKRCLKIAQKISTCLDFAKTGETASLDRDEKPLQYPDFMEKGGFKDTYR 188
Query: 961 SFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDL-EVDGFEAFLGVAESHKEMYEE 1019
S VLG LYR L ++ + + ++ A+ +H L E G+ A++ +Y
Sbjct: 189 SQHVLGHLYR--LHRSLEAVVSTNFQDRAADGDGNHALFEYPGWRDHEESAQTALAVYGS 246
Query: 1020 EMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWF-- 1077
M ++ +G TE E+++G + + + Y + ++ + ++L +E F
Sbjct: 247 RMEQILRQHGIKTEGEVVSGIINSVSDY-NKSKTDKASVEALVEKQYRDLVKSTREQFFR 305
Query: 1078 --GSSCKENEHP----------QLASAWYHVTYSPSYCKERMALLSFPWIVGDILLNI-K 1124
++C+ + P Q+ASAWY VTY+ + + SFPW V D+LL + K
Sbjct: 306 DVDAACQSLKVPTEAGKLTVLLQVASAWYMVTYAGVW--QESNCYSFPWSVSDVLLLVMK 363
Query: 1125 SVNS 1128
VN+
Sbjct: 364 QVNA 367
>gi|241083169|ref|XP_002409050.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
gi|215492623|gb|EEC02264.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
Length = 167
Score = 124 bits (310), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 95/167 (56%), Gaps = 6/167 (3%)
Query: 736 GRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCL 795
GR ++G DET L YG+VFV+ T +L+ +V T I+ G VLVTK PCL
Sbjct: 6 GRNMLGVLDETQSLEYGEVFVQ--FTEHQLDDGSCEDDPKVP-TTKILVGAVLVTKCPCL 62
Query: 796 HPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI-P 854
HPGDVR AV L DCI+FP KG RPHPNE +G DLDGD + + W+ DL+ P
Sbjct: 63 HPGDVRKFAAVDIPGLHH--VKDCIVFPAKGPRPHPNEMAGSDLDGDEYIVIWEKDLLFP 120
Query: 855 CETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHL 901
+P M + S + D + + KF +Y+ ND +G +S AHL
Sbjct: 121 GNNQPAMVFCDHSSVVPSDDSLEDGMVKFICNYIKNDNVGILSNAHL 167
>gi|15419599|gb|AAK97084.1|AF293414_1 RNA-dependent RNA-polymerase [Giardia intestinalis]
Length = 1377
Score = 124 bits (310), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 125/479 (26%), Positives = 198/479 (41%), Gaps = 118/479 (24%)
Query: 509 WMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKI 568
W+G ++++ C R G F S T+ V +DV+++ D E N Y F+DG G+I
Sbjct: 260 WLGDIKEVQACKICT-RRGLCFGKSLPTIKVREEDVQIVSDKEY----NGYVFTDGAGEI 314
Query: 569 SLSFARQVA------------------------------------------QKCGLSHTP 586
S ++A L P
Sbjct: 315 SYDLMLEIALCLDKLKIEQLHKDTETYYDNGFADTNEDSEHTVPHLQPNLKTASNLIQVP 374
Query: 587 SAFQIRYGGYKGVIAVDRNSF---RKLSLRRSMLKFESRN-----RMLNVTKWSESMPCF 638
SA Q+R+ G KGV+ + N+ R + +S +KF N + L + + ++
Sbjct: 375 SAVQMRWAGTKGVLIL--NALLPPRTILFHKSQVKFSIPNPTETQQTLEILRVAQRSKGM 432
Query: 639 LNREIISLLSTLGVKDEVFEAMQ----QQQLILLGKMLINREAA--LDVLQKLNGVDSKN 692
+N +II LLS +GV D+VF + Q+ L+ L + R A ++ + + S
Sbjct: 433 INMQIIVLLSEMGVPDDVFLNLVYQDLQKTLLFLEPVDRCRHQADLYQLVSRASHSSSGK 492
Query: 693 ILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYG 752
++++ML+ G + EP L +L+ QL +K+ R YVP R+ +G +D +L G
Sbjct: 493 LILQMLMAGVD-ITEPCLQFLLMKLQMMQLRSMKANMRFYVPDSRIFVGVYDCFDLLKEG 551
Query: 753 QVFVRVT--------------------MTREELESKDQSFFHRVDD-----KTSIVKGKV 787
+V+V + +E L D ++ D S V+G+V
Sbjct: 552 EVYVGLQEPLSISKWAAATHLKAMSNDTQQEALLPPDLDL--QISDIAVGLNISCVEGRV 609
Query: 788 LVTKNPCLHPGDVRVLEAV--YEMKLEEKD--------------------YVDCIIFPQK 825
+V KNPC + GDVR+ AV +E E Y I FP+
Sbjct: 610 VVAKNPCFYRGDVRIYHAVNIFERLRREASRQNLKPVLPSFVAQEAIRGMYRGVICFPKY 669
Query: 826 GE-RPHPNECSGGDLDGDIFFISWDNDL---IPCETEPPMDYTGRRSRIMDHDVTLEEI 880
E RP + SG DLDGDI+++SWD L I E E P + I H + L +I
Sbjct: 670 YEGRPMTDCLSGSDLDGDIYWVSWDASLLGTIQREYE-PASFQANPGEIDAHALDLRDI 727
>gi|308161550|gb|EFO63991.1| RNA-directed RNA polymerase, putative [Giardia lamblia P15]
Length = 1999
Score = 123 bits (309), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 125/450 (27%), Positives = 197/450 (43%), Gaps = 115/450 (25%)
Query: 508 GWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGK 567
W+G N++++ C R G F S T+ V + V+++ D + N Y F+DG G+
Sbjct: 428 NWLGDINEVQACKICT-RRGLCFGKSLPTIKVREEHVQVVADRQY----NNYVFTDGAGE 482
Query: 568 ISLSFARQVA-----------------------------QKCGLSH-------------T 585
IS ++A + +SH
Sbjct: 483 ISYDLMLEIALCLNKLKVEQLNKNTETHYLDEFADTSEDTEQNMSHLQPNLKTISNLIQV 542
Query: 586 PSAFQIRYGGYKGVIAVDRNSF---RKLSLRRSMLKFESRN--------RMLNVTKWSES 634
PSA Q+R+ G KGV+ + N+ + + L S +KF N +L V + S+
Sbjct: 543 PSAVQMRWAGAKGVLIL--NALLPPKTILLHNSQIKFSIPNPTETQQTIEILRVAQPSKG 600
Query: 635 MPCFLNREIISLLSTLGVKDEVFEAM--QQQQLILLGKMLINR---EAAL-DVLQKLNGV 688
M +N +II LLS +GV D+VF + Q Q LL I+R +A L ++ + +
Sbjct: 601 M---INMQIIVLLSEMGVPDDVFLNLVYQDLQKALLFLEPIDRCRYQADLYQLVSRTSHS 657
Query: 689 DSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGI 748
S I+++ML+ G + +EP L +L+ QL +K+ R VP R+ +G +D +
Sbjct: 658 PSGKIILQMLMAGVDI-IEPCLQFILMKLQLMQLRSMKANMRFSVPDSRIFVGIYDCFDL 716
Query: 749 LNYGQVFVRV---------TMT-----------REELESKDQSFF--HRVDDKTSIVKGK 786
L G+V++ + T T RE L D + V S V+G+
Sbjct: 717 LKEGEVYIGLQEPLSISKWTATTHLKAIFNDTQRESLLPPDLNLHISDVVGLDISCVEGR 776
Query: 787 VLVTKNPCLHPGDVRVLEAV--YEMKLEEKD--------------------YVDCIIFPQ 824
V+V KNPC + GDVR+ +AV +E +E Y I FP+
Sbjct: 777 VIVAKNPCFYRGDVRIYQAVNIFERLKQETSRQKLKAVLPSFVTREAIRGMYRGVICFPK 836
Query: 825 KGE-RPHPNECSGGDLDGDIFFISWDNDLI 853
E RP + SG DLDGDI+++SWD L+
Sbjct: 837 YYEGRPMTDCLSGSDLDGDIYWVSWDASLL 866
>gi|290976086|ref|XP_002670772.1| predicted protein [Naegleria gruberi]
gi|284084334|gb|EFC38028.1| predicted protein [Naegleria gruberi]
Length = 1384
Score = 122 bits (307), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 135/499 (27%), Positives = 216/499 (43%), Gaps = 106/499 (21%)
Query: 534 KQTLVVPVQDVEMIPDV---EVTSDGNTYCFSDGIGKISLSFARQVAQKCGLS------- 583
KQ+L + + + +IP + E T + F+DG G ISL A +V + S
Sbjct: 349 KQSLRLALFNTPVIPTIGVSEYTVINDEGLFTDGCGFISLELAMKVYEIVRKSKNLLKYQ 408
Query: 584 -----------------------HTPSAFQIRYGGYKGVIAVDRNSFR----KLSLRRSM 616
+ P A+QIR+ G KG++ + N+ + L LR+SM
Sbjct: 409 SKQSMDEDGIYEENDGVEFLVNEYLPCAYQIRFRGAKGMVYIHPNAEKVYGHHLVLRKSM 468
Query: 617 LKFESRNR----MLNVTKWSESMPCFLNREIISLLSTL-GVKDE-----VFEAMQQQQLI 666
+K E N + N+ S PC R +++ L G +DE +FE + Q+
Sbjct: 469 MKIEHPNTDDDIINNLCIVGYSSPCDFARINSTIMHILEGCEDETKQGKIFEILNQKACK 528
Query: 667 LLGKMLIN--REAALDVL--QKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQL 722
+ ++ N E+ +D + Q + D ++ V +L+ + L + NQ+
Sbjct: 529 HIENLMKNYISESDIDKVFDQYVKQGDYASLNVLSILKSKKL-------AFLTGPYRNQI 581
Query: 723 SDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSI 782
L+ C R L G D G+L GQ+F++V+ + K ++
Sbjct: 582 LSLRIPCY----SSRRLYGIADPFGVLKEGQIFIQVSSLNDP-------------KKKNV 624
Query: 783 VKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYV-DCIIFPQKGERPHPNECSGGDLDG 841
++ V+VTK PCLH GD+R LEAV + E +++ D I+FP KG RP N +G DLDG
Sbjct: 625 IENTVIVTKEPCLHRGDLRKLEAV---NIPELNFLYDVIVFPTKGSRPITNMIAGSDLDG 681
Query: 842 DIFFISWDNDLIP--CETEP-PMDYTGRRSRIMDHDV--TLEEIHKFFVDYMINDTLGAI 896
D +F WDN+L+ E +P D +R D D+ L I F D+ N
Sbjct: 682 DQYFACWDNELVESLVEFDPGSFDDDYNETRSFDPDIFKDLIGIRHLFADFYGNQW---- 737
Query: 897 STAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTG------APAEMPLALKPKEFPDF 950
S + + +R L TL + A+D K G ++ L K FP +
Sbjct: 738 SRKYWNNMER------------LCTLINRAIDAPKKGNYSVAVNAQDLELLEKFPGFPHY 785
Query: 951 MEREDKPRYISFGVLGKLY 969
+ + P S ++GKLY
Sbjct: 786 HKNKHGPLRRSVSLVGKLY 804
>gi|297832162|ref|XP_002883963.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329803|gb|EFH60222.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
subsp. lyrata]
Length = 981
Score = 122 bits (305), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 164/610 (26%), Positives = 256/610 (41%), Gaps = 125/610 (20%)
Query: 451 SKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQ-----------------LRNNSV- 492
S Y Y I ++GI+IG + Y+F F +R +S
Sbjct: 260 SSTYSNDRYFTYKEIAKNGIMIGLRRYQFFVFKDGGKEEKKKDLSTKKVKCYFIRTDSTA 319
Query: 493 -------WMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVE 545
++F S + R ++ +++ AR + S +K TL V + +
Sbjct: 320 SCDMENPYIFTGK---SIHEARMHFMHVHRAPTLANYMARFSLILSKTK-TLEVDMTGIT 375
Query: 546 MIP--DV--------EVTSDGNTYCF-SDGIGKISLSFARQVA-----QKCGLSHT---- 585
P D+ +V C SDG G IS AR KC S
Sbjct: 376 FDPIDDIHCHDQDGKDVLDKNKKPCIHSDGTGYISEDLARMCPLNIFKGKCLRSENIQEA 435
Query: 586 -----PSAFQIR--YGGY--KGVIAVDRN-SFRKLSLRRSMLK---------FESRNRML 626
P Q R Y GY KG +++ R + +R SM+K F + N +
Sbjct: 436 CNQDPPLLIQFRMFYDGYAVKGTFLLNKKLCPRTVQVRPSMIKVSKDPSLSNFSTFNALE 495
Query: 627 NVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLN 686
VT + L++ +++LLS G+ +E F + L + N+ AAL+V
Sbjct: 496 VVTTSNPPRRTKLSKNLVALLSYGGIPNEFFLDILLNTLEESKSIFYNKHAALNVALNYG 555
Query: 687 GVDSKNILVKMLLQGY---EPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCF 743
+D +N +M+L G EP+++ +LS++L + + +DLK+ R+ V + L+G
Sbjct: 556 EMDDQNA-AQMILVGIPLDEPHLKNHLSILL----KTEKNDLKA-GRLPVTESYYLMGTV 609
Query: 744 DETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVL 803
D TG L +V V + ++ + G+VLV +NP LH GD+ +L
Sbjct: 610 DPTGELKEDEVCVIL--------------------ESGQISGEVLVYRNPGLHFGDIHIL 649
Query: 804 EAVYEMKLEEKDYVD----CIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI----PC 855
+A Y LEE YV + FPQKG R +E +GGD DGD++FIS + +L+ P
Sbjct: 650 KATYVKALEE--YVGNSKYAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPELLEHFKPS 707
Query: 856 E-----TEPPMDYTGRRSRIMDHDVTLEE---------IHKFFVDYMINDTLGAISTAHL 901
E T P +GR + + EE H V + D+ I L
Sbjct: 708 EPWVSLTPPSKSNSGRAPSQLSPEELEEELFEMFLKAGFHASNVIGIAADSWLTIMDRLL 767
Query: 902 VHAD-RDPDKAR-SSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRY 959
+ D R +KA K L L ++ A+D K G +P L+P FP +MERE K +
Sbjct: 768 ILGDERAEEKAEMKKKMLKLIDIYYDALDAPKKGDKVYLPNELRPDIFPHYMEREKK--F 825
Query: 960 ISFGVLGKLY 969
S +LG +Y
Sbjct: 826 KSTSILGLIY 835
>gi|302678369|ref|XP_003028867.1| hypothetical protein SCHCODRAFT_236896 [Schizophyllum commune H4-8]
gi|300102556|gb|EFI93964.1| hypothetical protein SCHCODRAFT_236896 [Schizophyllum commune H4-8]
Length = 711
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 111/402 (27%), Positives = 176/402 (43%), Gaps = 68/402 (16%)
Query: 477 YEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQT 536
Y +L F+ SQL++ + + ++ W +V + +G + S
Sbjct: 86 YSWLGFTESQLKDGTFLLLREDEH--------W--------TVDRFLDALGNVKS----- 124
Query: 537 LVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGY 596
+P + V IPD + T DG F+DG G I S A +V + + FQIR GG
Sbjct: 125 --IPDELVATIPDFQAT-DGT--LFTDGCGLIRDSCAAEVCSALEIPEDTTVFQIRRGGV 179
Query: 597 KGVIA-------------VDRNSFRKLSLRRSMLKFESRNRMLNVTKWSE-SMPCFLNRE 642
KG++ R K++LR SM K+ +L + + LNR
Sbjct: 180 KGLLVRYPDVVFDRICRDAGRRGPMKIALRPSMRKYPGGPTVLEIHSVARRPRSARLNRH 239
Query: 643 IISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQK---LNGVDSKNILVKMLL 699
I LL TLGV+ E FE++ + L + ++ +R+ ALD L+ +G L +LL
Sbjct: 240 FIILLLTLGVRLEAFESLLRANLEFIDLIMTSRQRALDALEAELDADGAGFDQELHDLLL 299
Query: 700 QGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVT 759
G++ + EP++ +L + L L+ + I V L G DE G+L G+V++ V
Sbjct: 300 AGFQLS-EPHVRCLLERLQKRSLDVLRKKLNIRVKNSFYLFGVCDELGVLREGEVYINVA 358
Query: 760 MTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDC 819
+ G VLV +NP +RVL+AV L +C
Sbjct: 359 --------------------GDVKLGTVLVGRNPAYSTSVLRVLQAVNRPGLSH--LRNC 396
Query: 820 IIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCE-TEPP 860
I+F G R ++ GD+DGD F+++ + LIP EPP
Sbjct: 397 IVFASGGARSETSKMQ-GDVDGDNFWVTTEPSLIPPRMAEPP 437
>gi|42569168|ref|NP_179583.3| RNA-dependent RNA polymerase-like protein [Arabidopsis thaliana]
gi|322967572|sp|O82188.2|RDR5_ARATH RecName: Full=Probable RNA-dependent RNA polymerase 5;
Short=AtRDRP5; AltName: Full=RNA-directed RNA polymerase
5
gi|330251850|gb|AEC06944.1| RNA-dependent RNA polymerase-like protein [Arabidopsis thaliana]
Length = 977
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 159/607 (26%), Positives = 255/607 (42%), Gaps = 119/607 (19%)
Query: 451 SKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQ-----------------LRNNSVW 493
S Y Y I ++GI+IG + Y+F F +R +S
Sbjct: 256 SSTYSIDHYFTYKGIAKNGIMIGLRRYQFFVFKDGGKEEKKKDLSTKKVKCYFIRTDSTA 315
Query: 494 MFASNDEV-----SAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDV--EM 546
+ + S + R ++ +++ AR + S +K TL V + + +
Sbjct: 316 FYDMQNPYILTGKSIYEARMHFMHVHRAPTLANYMARFSLILSKTK-TLEVDMTGITFDQ 374
Query: 547 IPDV--------EVTSDGNTYCF-SDGIGKISLSFAR--------------QVAQKCGLS 583
I D+ +V C SDG G IS AR + Q+
Sbjct: 375 IDDIHCHDQDGKDVLDKNKKPCIHSDGTGYISEDLARMCPLNIFKGKCLRSESIQEACYQ 434
Query: 584 HTPSAFQIR--YGGY--KGVIAVDRN-SFRKLSLRRSMLK---------FESRNRMLNVT 629
P Q R Y GY KG +++ R + +R SM+K F + N + VT
Sbjct: 435 DPPLLIQFRMFYDGYAVKGTFLLNKKLCPRTVQVRPSMIKVSKDPSLSNFSTFNALEVVT 494
Query: 630 KWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVD 689
+ L++ +++LLS G+ +E F + L + N+ AAL+ +D
Sbjct: 495 TSNPPKRTKLSKNLVALLSYGGIPNEFFLDILLNTLEESKSIFYNKRAALNAALNYGEMD 554
Query: 690 SKNILVKMLLQGY---EPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDET 746
+N +M+L G EP+++ YLS++L + + +DLK+ ++ V + L+G D T
Sbjct: 555 DQNA-AQMILVGIPLDEPHLKNYLSILL----KTEKNDLKA-GKLPVTESYYLMGTVDPT 608
Query: 747 GILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAV 806
G L +V V + ++ + G+VLV +NP LH GD+ +L+A
Sbjct: 609 GALKEDEVCVIL--------------------ESGQISGEVLVYRNPGLHFGDIHILKAT 648
Query: 807 YEMKLEEKDYVD----CIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI----PCE-- 856
Y LEE YV + FPQKG R +E +GGD DGD++FIS + +L+ P E
Sbjct: 649 YVKALEE--YVGNSKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPELLENFKPSEPW 706
Query: 857 ---TEPPMDYTGRRSRIMDHDVTLEE---------IHKFFVDYMINDTLGAISTAHLVHA 904
T P +GR + + EE H V + D+ I L+
Sbjct: 707 VSLTPPSKSNSGRAPSQLSPEELEEELFEMFLTAGFHASNVIGIAADSWLTIMDRFLILG 766
Query: 905 -DRDPDKAR-SSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISF 962
DR +KA K L L ++ A+D K G +P LKP FP +MER+ K + S
Sbjct: 767 DDRAEEKAEMKKKMLELIDIYYDALDAPKKGDKVYLPNKLKPDIFPHYMERDKK--FQST 824
Query: 963 GVLGKLY 969
+LG ++
Sbjct: 825 SILGLIF 831
>gi|241636823|ref|XP_002410661.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
gi|215503493|gb|EEC12987.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
Length = 385
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 97/303 (32%), Positives = 147/303 (48%), Gaps = 33/303 (10%)
Query: 836 GGDLDGDIFFISWDNDLI-PCETEPPMDYTGRRSRIMDHDVTLEE-IHKFFVDYMINDTL 893
G DLDGD + + W+ DL P + PM ++ S + D LEE + KF +Y+IND +
Sbjct: 12 GSDLDGDEYIVIWEPDLFFPGSNKTPMTFS-DSSSVGSADENLEEGMIKFICNYIINDNV 70
Query: 894 GAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMER 953
G +S AHL +D+ D S CL +A S VDFAKTG + + KP +PDFME+
Sbjct: 71 GIMSNAHLAWSDQLEDGIFSPLCLGVAKKISTCVDFAKTGLASCLDRHEKPLLYPDFMEK 130
Query: 954 E-DKPRYISFGVLGKLYR------ATLDSIMQIRSNAIWSEKIAEASYDHDL-EVDGFEA 1005
K Y S VLG LYR A +++ R+ ++AE L E G++
Sbjct: 131 GGSKDTYRSKRVLGHLYRLHRSLQAVINTDFMARTG-----QLAEGDGHCTLFEYPGWKD 185
Query: 1006 FLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLS 1065
VAE Y +M+ +++ YG +E E+++G + N + Y + N +K +
Sbjct: 186 HQEVAEKALAAYTVQMSRILHQYGVGSEGEVVSGIIVNVSDY-NKSNEDKNSVKALVAKQ 244
Query: 1066 AKNLQNEAKEWFGS----SCKENEHP----------QLASAWYHVTYSPSYCKERMALLS 1111
+L ++ F S +C N Q+ASAWY VTY+ + ++ S
Sbjct: 245 YASLMKLTRDTFFSDVTAACNSNGASTDIAKKTILLQMASAWYMVTYAGVWHEQNCQ--S 302
Query: 1112 FPW 1114
FPW
Sbjct: 303 FPW 305
>gi|290993091|ref|XP_002679167.1| RNA dependent RNA polymerase [Naegleria gruberi]
gi|284092782|gb|EFC46423.1| RNA dependent RNA polymerase [Naegleria gruberi]
Length = 1235
Score = 119 bits (299), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 115/408 (28%), Positives = 175/408 (42%), Gaps = 102/408 (25%)
Query: 536 TLVVP---VQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVA--------------- 577
T V+P +Q +IPD+E DG + F+DG G IS A++V
Sbjct: 327 TPVIPTEIIQYFTVIPDIE--RDG--FNFTDGCGFISPDMAKKVYKHILNAENRVLIKTD 382
Query: 578 ---------QKCGL------SHTPSAFQIRYGGYKGVIAVDRNSFRK----LSLRRSMLK 618
++ G S+ PSAFQIR+ G KG++ V+ +F K + LR SM+K
Sbjct: 383 QEEDEIGYDEQRGFDLFSDSSYIPSAFQIRFRGAKGMLVVNTETFEKYRVHIVLRESMVK 442
Query: 619 FESRNRM----LNVTKWSESMPCFLNR---EIISLLSTLG----VKDEVFEAMQQQQLIL 667
++ ++ + S PC L R I+ LLS V+ V E
Sbjct: 443 CKTNEKVDQSFSTLQIVGHSSPCELTRVNSTIMHLLSGCDSNGEVRKRVLEMASAHVQNS 502
Query: 668 LGKMLI-NREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLK 726
L K + + E K N + S N+L +G+ PY S++
Sbjct: 503 LDKYVHEDTEVIARQYMKDNNLISLNVLSTTKNKGFAFLAGPYKSLI------------- 549
Query: 727 SRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGK 786
+ +I R L G D +LN G+VFV+++ + + +++ +
Sbjct: 550 TSLKIPFSNSRRLYGVVDPYEVLNEGEVFVQISSFKNPSHKQ-------------VLQKE 596
Query: 787 VLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFI 846
+++TK PCLH GD+R ++AVY KL D I+F KG+RP PN SG DLDGD FF+
Sbjct: 597 IVLTKEPCLHRGDLRKIKAVYYPKLSH--LCDVIVFSSKGKRPVPNMISGSDLDGDQFFV 654
Query: 847 SWDN---------------------DLIPCETEPPMDYTGRRSRIMDH 873
WD+ D+ P E + D+ G R +DH
Sbjct: 655 CWDDLIVDNVKIFEPGLFDEEIKQEDIRPFEPDVFKDWVGVRHAYVDH 702
>gi|42569164|ref|NP_179581.2| RNA-dependent RNA polymerase-like protein [Arabidopsis thaliana]
gi|322967566|sp|O82190.2|RDR3_ARATH RecName: Full=Probable RNA-dependent RNA polymerase 3;
Short=AtRDRP3; AltName: Full=RNA-directed RNA polymerase
3
gi|330251848|gb|AEC06942.1| RNA-dependent RNA polymerase-like protein [Arabidopsis thaliana]
Length = 992
Score = 119 bits (299), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 163/635 (25%), Positives = 256/635 (40%), Gaps = 131/635 (20%)
Query: 439 NALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAF---------------- 482
N L+ + + + Y +YS I ++GI++G + Y F F
Sbjct: 248 NVLTVKFDKVLGVETYCNDLYSTYKGIAKNGIMVGLRRYRFFVFKDGGKEEKKKDVSTKG 307
Query: 483 ---------SASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSS 533
S + + + ++FA S + R N + S+ +R + S +
Sbjct: 308 VKCYFIRTDSTASIDMQNPYIFAGK---SMHEARMHFMHVNTLSSLPNYMSRFSLILSKT 364
Query: 534 KQTLVVPVQDV--EMIPDVE---------VTSDGNTYCFSDGIGKISLSFAR-------- 574
K TL V + + E I D+ + +G SDG G IS AR
Sbjct: 365 K-TLEVDMTGITFEQIDDIHCHDQDDKDVLDKNGKPCIHSDGTGYISEDLARMCPVNIFK 423
Query: 575 ----------------QVAQKCGLSHTPSAFQIR--YGGY--KGVIAVDRN-SFRKLSLR 613
+ CG P Q R Y GY KG ++ R + +R
Sbjct: 424 GKSMRSNNIQSKNLNFEGQGPCG-QEPPLLIQFRIFYNGYAVKGTFLTNKKLPPRTVQVR 482
Query: 614 RSMLK-FESR--------NRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQ 664
SM+K +E R N + VT + L+R +++LLS GV ++ F + +
Sbjct: 483 PSMIKVYEDRTLSNLSTFNSLEVVTTSNPPRKARLSRNLVALLSYGGVPNDFFLNILRNT 542
Query: 665 LILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSD 724
L + + AA +N D + M+L G P EPYL L + + +
Sbjct: 543 LEESKTIFYSERAAFKA--AINYGDDQ-YTADMILVGI-PLDEPYLKDRLSYLLKTERNA 598
Query: 725 LKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVK 784
LK+ R + + ++G D TG L ++ V H + +
Sbjct: 599 LKA-GRFPIDESYYIMGTVDPTGELKENEICV---------------ILH-----SGQIS 637
Query: 785 GKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVD----CIIFPQKGERPHPNECSGGDLD 840
G VLV +NP LH GD+ VL+A Y LE DYV + FPQKG R +E +GGD D
Sbjct: 638 GDVLVYRNPGLHFGDIHVLKATYVKALE--DYVGNAKFAVFFPQKGPRSLGDEIAGGDFD 695
Query: 841 GDIFFISWDNDLI----PCE-----TEPPMDYTGRRSRIMDHDVTLEEIHKFFVD--YMI 889
GD++FIS + L+ P E ++P Y GR+ + + EE+ K F+ +
Sbjct: 696 GDMYFISRNPKLLEHFKPSEPWVSSSKPSKIYCGRKPSELSEEELEEELFKMFLKARFCK 755
Query: 890 NDTLG-------AISTAHLVHADRDPDKA--RSSKCLHLATLHSMAVDFAKTGAPAEMPL 940
D +G I L D + R L L ++ A+D K GA ++P
Sbjct: 756 RDVIGMAADCWLGIMDPFLTLGDESAKEKYERKKNILKLIDIYYDALDAPKKGAKVDLPP 815
Query: 941 ALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDS 975
L+ K FP +MER+ K + S +LG ++ T+DS
Sbjct: 816 DLEIKNFPHYMERDPKRDFRSTSILGLIF-DTVDS 849
>gi|336378304|gb|EGO19462.1| hypothetical protein SERLADRAFT_478899 [Serpula lacrymans var.
lacrymans S7.9]
Length = 496
Score = 119 bits (298), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 85/257 (33%), Positives = 128/257 (49%), Gaps = 27/257 (10%)
Query: 722 LSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTS 781
L +LK R I VP L+G DE G L G+++ V R L
Sbjct: 55 LRELKYRAHIAVPGSYTLLGVSDEWGCLREGEIYATVQDERTGLYKP------------- 101
Query: 782 IVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDG 841
++G V++T++P +HPGD++ + AV +L + ++F +G+R + +GGDLDG
Sbjct: 102 -IEGPVVITRSPQVHPGDLQFVTAVRRPELSH--LTNVVVFSCEGDRSLASCLAGGDLDG 158
Query: 842 DIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHL 901
D F + D L P + P Y + + ++ F ++Y+ +D +G IS HL
Sbjct: 159 DDFNLILDEALFPEKVAMPGAYDSLPIKQTTSPCGISDVVDFVMNYIESDLIGYISILHL 218
Query: 902 VHAD-RDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMP--LALKPKEFPDFMERE---- 954
AD +DP ++CL LA S AVD+ KTG+P +M L KE PDF+ RE
Sbjct: 219 RFADIKDPG---CNECLKLAQFASHAVDYPKTGSPVKMQDLPQLPGKERPDFLAREGANL 275
Query: 955 -DKPRYISFGVLGKLYR 970
+ Y S +LGKLYR
Sbjct: 276 QGEDFYQSQKLLGKLYR 292
>gi|443920944|gb|ELU40764.1| calcium:hydrogen antiporter [Rhizoctonia solani AG-1 IA]
Length = 862
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 118/426 (27%), Positives = 196/426 (46%), Gaps = 58/426 (13%)
Query: 297 GFNLSHEVLFQLNSLVHNQKV--SLVAADAELIQILSGLSMETALMVLQKLHKLKSICYD 354
G +L EV FQ+ +L N + + + A +++ L+ S + A L+
Sbjct: 419 GGSLDFEVAFQIEALFRNGALVPTELLAIKPIVEKLAKKSKDQAADALRTFRAEIQGAGA 478
Query: 355 PVSF---------VKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPE 405
SF + ++HV ++ +S+P K I CY +TP ++
Sbjct: 479 RKSFNDFEDKNVVEEFEVHVR-KSAESMPW--EKIGISKASFMCYHVKITPTAVHLN--- 532
Query: 406 LETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYS--RIL 463
E SN V++ + Y + F+RV F +E + R F T ++ R+
Sbjct: 533 -EQSNRVIRRYPGYETHFIRVAFTDE------------ADGRARFEYEVDTMAFTQKRVG 579
Query: 464 TILQDGIVIGDKHYEFLAFSASQLRNNSVWMFAS---NDEV-SAEDVRGWMGCFNK-IRS 518
L++ I + D+ YE L +S S R N+ + A DE+ + E +R +G F+K I
Sbjct: 580 KFLKNAIRLCDREYELLGYSQSGFRENACFFVAPFEWKDEIINGEYIRYSLGNFDKVIDC 639
Query: 519 VSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQV-- 576
++ ARM Q FSS+ Q+ ++ ++ I +++ D FSDG G IS A+ V
Sbjct: 640 PARYGARMSQAFSSTSQSTMLQESEIRHIMELKNRRD---EMFSDGCGTISRELAKDVWK 696
Query: 577 -------AQKCGLSH----TPSAFQIRYGGYKGVIAVD-RNSFRKLSLRRSMLKFESRNR 624
+ G H P AFQIR GG KG++ +D + R L LR SM KFE+ +
Sbjct: 697 SMLQHLPPSRQGFHHENELPPPAFQIRIGGSKGMVRLDPKLEGRVLCLRPSMTKFEAEHD 756
Query: 625 M-LNVTK-WSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQL--ILLGKMLINREAALD 680
+ L + + + PCFLNR ++ LL + GV+D+VF + + L + G + A L
Sbjct: 757 LSLEIARAFVTYSPCFLNRPLVVLLWSGGVEDDVFLNLMKDNLAETMSGMTTLGGAAKLL 816
Query: 681 VLQKLN 686
+ +L
Sbjct: 817 IANRLG 822
>gi|242051713|ref|XP_002455002.1| hypothetical protein SORBIDRAFT_03g002800 [Sorghum bicolor]
gi|241926977|gb|EES00122.1| hypothetical protein SORBIDRAFT_03g002800 [Sorghum bicolor]
Length = 1127
Score = 117 bits (292), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 162/627 (25%), Positives = 249/627 (39%), Gaps = 120/627 (19%)
Query: 552 VTSDGNTYCFSDGIGKISLSFARQVAQKC-------------GLSHTPSA------FQIR 592
DG +DG G IS+ AR G H + F++
Sbjct: 527 AVQDGKDLIHTDGTGLISVDLARNCPSSIFKGNFLKDAVDSKGHQHLTTKHPLLIQFRMF 586
Query: 593 YGGY--KGVIAVD-RNSFRKLSLRRSMLKF---------ESRNRMLNVTKWSESMPCFLN 640
+ GY KG + D R + +R SM+K +S N + +T F +
Sbjct: 587 HNGYAVKGTLLADKRLPANTIHIRPSMIKIHGDENSFGEKSFNSLEVITTSYRPKRAFTS 646
Query: 641 REIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQ 700
R +ISLL V++E F + + L + +L+V +D ++ +M+L
Sbjct: 647 RFLISLLHYGRVREEFFLDLLRNALEDVNNARHRPRNSLEVAFNHADLDD-SMSARMILS 705
Query: 701 GYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTM 760
G +P E YL L + + LK RI + L+G D TG L QV + +
Sbjct: 706 GIQPEDEAYLQSQLALMAKVERKGLKE-GRIPIDDTYYLMGTTDPTGTLKRDQVCIIL-- 762
Query: 761 TREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEE--KDYVD 818
+ GKVLV K+P LH GD+ +L A Y LE+ +
Sbjct: 763 ------------------DNGQLSGKVLVYKHPGLHFGDIHILTATYIDGLEKIVGNSKY 804
Query: 819 CIIFPQKGERPHPNECSGGDLDGDIFFIS---------------WDNDLIPCETE--PPM 861
I FP G R +E + D DGD++++S W + P +TE P
Sbjct: 805 AIFFPTCGPRSLADEMANSDFDGDLYWVSRNPQLLEGFTKQRKPWVRRIQPTKTELKKPQ 864
Query: 862 DYTGRRSRIMDHDVTLEEI--HKFF-VDYMINDTLGAISTAHLVHADR-----DPDKARS 913
DYTG + LE + H+F + + LGA S L DR P R
Sbjct: 865 DYTGPK---------LESLLFHEFLRARFTPSYVLGAASNCWLALMDRLLTGGVPKSERQ 915
Query: 914 S---KCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYR 970
+ K L L ++ +A+D K G +P LK K++P FMER++K Y S VLGK+Y
Sbjct: 916 AIKKKMLDLVDIYYLALDAPKEGNKITVPGELKVKKYPHFMERDEKKSYTSTSVLGKIY- 974
Query: 971 ATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGA 1030
D +M + E+ D ++++ F V S E Y+ +L YY
Sbjct: 975 ---DEVM-----------LKESEIDPEIKIVPLSCFTEVKVS--EDYKGRWRSL--YYQY 1016
Query: 1031 STEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSCKENEHPQLA 1090
E L L ++A + Y + K ++ EA+E+ S ++ + A
Sbjct: 1017 LRESTDLC-KLEDKAEKNNNYRQLYQEYKRKLY--------EAEEFEQSPREQLDLLNEA 1067
Query: 1091 SAWYHVTYSPSYCKERMALLSFPWIVG 1117
A Y V Y + + +A F W V
Sbjct: 1068 CAVYQVVYEYAMSRNDIAKCGFAWKVA 1094
>gi|406693965|gb|EKC97304.1| hypothetical protein A1Q2_08384 [Trichosporon asahii var. asahii
CBS 8904]
Length = 945
Score = 117 bits (292), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 122/498 (24%), Positives = 216/498 (43%), Gaps = 92/498 (18%)
Query: 382 IDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFV-EEDWSKLPANA 440
+D N + Y LVTP ++ L P +ETS ++N ++ F+RV F+ EED ++
Sbjct: 278 LDENSVVVYHCLVTPTRLVLLPPGVETSTDAIRNHLSFSDRFLRVEFIDEEDGFQVNPTV 337
Query: 441 LSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASN-- 498
L +P + +R+ + +G+ I +HY FLA+ A+ R S W A +
Sbjct: 338 LEADQM-----EPAEGTV-ARVRRAMMNGLNIAGRHYVFLAYGATSARQQSCWFLAEDPA 391
Query: 499 DEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNT 558
++ E V+ +G + +R + AR SK +++P D+ +
Sbjct: 392 KNLTVESVKRNLG-LDLLRDTT--VARF-----VSKMAIILP--DI-----LHADQQEKG 436
Query: 559 YCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSFRKLS----LRR 614
YC SD G+ +S D+ S +S R+
Sbjct: 437 YCESDA-GRTEISAVE----------------------------DKESMENISEEVYFRQ 467
Query: 615 SMLKFESRNRM----LNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILL-- 668
S +K+ + ++ LN+ ++ + L+R+ + +++ LGV D VFE++ IL
Sbjct: 468 SQVKYRTGSKTMAYGLNIVEFKRA---HLSRQAVVIMNHLGVPDAVFESL----FILAMR 520
Query: 669 -GKMLINREAALDVLQK-LNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLK 726
+ L+ R A +L++ L+ V L + +P L + + LSD +
Sbjct: 521 EARGLLKRSATAGLLKEDLSLVSQHTHFPVSELYSFGFKTDPMLLDICRATAVRLLSDYR 580
Query: 727 SRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGK 786
R+ V + L+G DE +L+ +VF + + D S D ++V G
Sbjct: 581 HNARLQVDQSVKLMGIADELNVLSEHEVFC-------QYDDPDSS------DGPNVVLGA 627
Query: 787 VLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFI 846
+ ++P LHPGD++++ AV +L + I+F +G+ S G+L GD + +
Sbjct: 628 CAIMRDPVLHPGDIQLVHAVDRPELHH--LRNVIVFSVQGQ-----PLSRGNLAGDQYSL 680
Query: 847 SWDNDLIPCETEPPMDYT 864
WD LIP E P YT
Sbjct: 681 IWDPVLIPPEQVEPSSYT 698
>gi|405974294|gb|EKC38950.1| Putative RNA-dependent RNA polymerase 1 [Crassostrea gigas]
Length = 299
Score = 116 bits (291), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 76/185 (41%), Positives = 106/185 (57%), Gaps = 9/185 (4%)
Query: 453 PYRT-KIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMG 511
PY + KI + +G I D+HY+FL S S+LRN+S W F+S D ++AE +R G
Sbjct: 77 PYGSMKIVQDMKRFFINGFEIHDRHYDFLGCSNSELRNHSFWFFSSYDGITAEFIRQNCG 136
Query: 512 CFNKIRSVSKCAARMGQLFSSSKQTLVVPV-QDVEMIPDVEVTSDGNTYCFSDGIGKISL 570
+ R V+ +++G FS S TL + Q+V DV N CF+DGIGKIS
Sbjct: 137 DLSMERCVASYVSKIGLCFSPSLSTLTMEEHQEVRFEEDVR----RNGLCFTDGIGKISR 192
Query: 571 SFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRN---SFRKLSLRRSMLKFESRNRMLN 627
A +VA+K L+ PS FQI YGG KG+IA+D + + L +R SM KFES ++ L
Sbjct: 193 RLAAKVAKKMNLNTVPSVFQICYGGCKGMIALDPSLGENREILVIRHSMKKFESSSKSLE 252
Query: 628 VTKWS 632
V + S
Sbjct: 253 VLQVS 257
>gi|42569166|ref|NP_179582.2| RNA-dependent RNA polymerase family protein [Arabidopsis thaliana]
gi|322967571|sp|O82189.2|RDR4_ARATH RecName: Full=Probable RNA-dependent RNA polymerase 4;
Short=AtRDRP4; AltName: Full=RNA-directed RNA polymerase
4
gi|330251849|gb|AEC06943.1| RNA-dependent RNA polymerase family protein [Arabidopsis thaliana]
Length = 927
Score = 115 bits (289), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 151/595 (25%), Positives = 242/595 (40%), Gaps = 115/595 (19%)
Query: 459 YSRILTILQDGIVIGDKHYEFLAFS----ASQLRNNSVWMF----------ASND----- 499
YS+ I ++GI++G + Y+F F A + + NS AS+D
Sbjct: 268 YSKYKEIAKNGIMVGLRRYQFFVFKDGGKAEKKKRNSTKQVKCYFIRTGSTASSDMENPY 327
Query: 500 ---EVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQ-DVEMIPDVE---- 551
+S + R + + S + AR + S +K+ V + V I D+
Sbjct: 328 ILSGMSIHEARMHFMHVHTLPSPANYMARFSLILSKTKKLEVDMTEITVMQIDDIHCHDQ 387
Query: 552 -----VTSDGNTYCFSDGIGKISLSFARQVA--------------QKCGLSHTPSAFQIR 592
+ +G SDG G IS AR Q + P QIR
Sbjct: 388 SNNDVLDKNGKPRIHSDGTGYISEDLARMCPLNIFKGKSMRSNNIQGTCVQEPPLLIQIR 447
Query: 593 Y----GGYKGVIAVDRN-SFRKLSLRRSMLK---------FESRNRMLNVTKWSESMPCF 638
KG+ +++N + + +R SM+K F + N + VT +
Sbjct: 448 MFNDGSAVKGIFLLNKNLPPQTVQVRPSMIKVYKDKNLSNFSTFNSLEVVTTSNPPKRAK 507
Query: 639 LNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKML 698
L++ +++LLS GV ++ F + L + AA +D KN L +M+
Sbjct: 508 LSKNLVALLSYGGVPNDFFLDILLNTLEKKKTIFFKVRAAGKAALHYGNMDDKNAL-QMI 566
Query: 699 LQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRV 758
+ G P EPYL L + + DLK+ ++ + + L+G D TG
Sbjct: 567 MAGI-PLDEPYLKHYLSKLLKLEKDDLKA-GKLPIDESYYLMGTVDPTG----------- 613
Query: 759 TMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVD 818
EL+ + S + D VLV +NP LH GD+ +L+A Y LE+ YV
Sbjct: 614 -----ELKEDEVSGLAKSQD--------VLVYRNPGLHFGDIHILKATYVKSLEQ--YVG 658
Query: 819 ----CIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI-------PCETEPPMD--YTG 865
+ FPQKG R +E +GGD DGD++FIS + L+ P + P YTG
Sbjct: 659 NSKYGVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEHYKPSEPWVSSSPRSKIYTG 718
Query: 866 RRSRIMDHDVTLEEIHKFFVD--YMINDTLGAISTAHLVHADR---------DPDKARSS 914
R+ + + EE+ K F+ + + +G + + L DR
Sbjct: 719 RQPSELSPEQLEEELFKIFLKTGFSPSSVIGQAADSWLAIMDRFLTLGDENVKEKAEMKK 778
Query: 915 KCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLY 969
K L L ++ A+D KTG +PL +K FP +MER + S +LG ++
Sbjct: 779 KMLKLTDIYYDAIDAPKTGTEVNLPLDVKVDLFPHYMERNKT--FKSTSILGLIF 831
>gi|391343492|ref|XP_003746043.1| PREDICTED: uncharacterized protein LOC100902078 [Metaseiulus
occidentalis]
Length = 1371
Score = 114 bits (286), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 178/763 (23%), Positives = 305/763 (39%), Gaps = 93/763 (12%)
Query: 391 RALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIF 450
RA+V P K P + + ++++ M V ++D ++L N + +
Sbjct: 400 RAIVCPSKTIVKPPTVVRVSALLRSVD--PEKVMLVDVRDDDGTRLRFNTQNEA------ 451
Query: 451 SKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFA--SNDEVSAEDVRG 508
RT I I ++ GI I K Y FL S SQ + S W +A D + VR
Sbjct: 452 ----RTFIQVSIAEKIKRGIKIAGKTYYFLGNSKSQAEDFSFWAYAIEKGDTDTISSVRE 507
Query: 509 WMGCFNKIRSVSKCAARMGQLFSSSKQTLVV-PVQDVEMIPDVEVTSDGNTYCFSDGIGK 567
+G + ++ A +F+ + + + P E DV SD F GIG+
Sbjct: 508 RLGITGNL---ARRIAVQDLVFAEALGAVSIDPSWVSEESEDVPAASD-----FKHGIGR 559
Query: 568 ISLSFARQVAQKCGLSHT-PSAFQIRYGGYKGVIAVDRN-SFRKLSLRRSMLKFESRNRM 625
IS + R V + C S T SA ++ +GG +G + D + ++ R+S S +
Sbjct: 560 ISEAALRTVVENCHWSRTLCSAIRVIHGGRRGTLVYDPSLEGSRIIYRKSQTVIRSEDST 619
Query: 626 LNVTKWSESMPCFLNREIISLLSTL--GVKDE---------VFEAMQQQQLILLGKMLIN 674
L + SE +R +IS LS+ G+ +E ++E + + + +
Sbjct: 620 LYLIGRSEMKNAAFDRTLISTLSSKADGLTEEFSVEDFLTPLYELLTEPLSLYSTGARVK 679
Query: 675 REAALDVLQKL--NGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIY 732
R AA VL + G D L GY+ + + L DLK + + +
Sbjct: 680 RVAAEPVLDHIFRKGED---------LYGYDKRGDGLFRQAVRCKALKALRDLK-KLKQH 729
Query: 733 VPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKN 792
+ ++ DE G+L G+VF++V+ +L ++ G +++ +
Sbjct: 730 MTNAYEIMPVVDELGLLEEGEVFIQVSSPGGDLR---------------VLSGDLVLARK 774
Query: 793 PCLHPGDVRVLEAVYEMKLEEK--DYVDCIIFPQKG-ERPHPNECSGGDLDG--DIFFIS 847
+H + R + AV + +C++ P KG RP G DI I+
Sbjct: 775 DAMHLEEFRRVTAVNRPDVVGALGHLFNCVVLPSKGGSRPLEFLAREASYAGESDIILIA 834
Query: 848 WDNDLIPC----ETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVH 903
D P +PP + +D E H F +Y+ +
Sbjct: 835 SHPDEEPAFLFKRNDPPRSTSIAVGSEVDASCD-TETHYF--NYLAYVSFNDFEEVFCAL 891
Query: 904 ADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMER-EDKPRYISF 962
AD P A S C+ + + +D + G PL K FP F+E+ D+ Y S
Sbjct: 892 ADSLPQHASSESCIRVGVQRRL-LDKYRRGGREVAPLP-KVVNFPHFLEKISDRRTYCSA 949
Query: 963 GVLGKLYR-ATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEM 1021
LG +YR L + +E + ++ H+L V+G EAF +A + ++
Sbjct: 950 RPLGHIYRKGRLIDTEYFEDTQMMTEDL---TFQHELRVEGSEAFAEIAARDIRQFRGDL 1006
Query: 1022 NALMNYYGASTEDEILTGNL-RNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSS 1080
+ + YG S DE+LTG + +R + N R D++ + L K+L + F
Sbjct: 1007 EGIASLYGISV-DEVLTGTIFSDRGQH--SSNERRSDIEAAVKLQVKHLALICRRKFKKG 1063
Query: 1081 ---CKENEHPQLASAWYHVTYSPSYCKERMALLSFPWIVGDIL 1120
E E Q SA+Y S + K+ +FPW++ D++
Sbjct: 1064 MEKASELEVLQKISAYY--VASRDFPKD--GGYAFPWMLPDLM 1102
>gi|3687227|gb|AAC62125.1| hypothetical protein [Arabidopsis thaliana]
Length = 966
Score = 113 bits (283), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 157/609 (25%), Positives = 248/609 (40%), Gaps = 105/609 (17%)
Query: 439 NALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWM---- 494
N L+ + + + Y +YS I ++GI++G + Y F F +
Sbjct: 248 NVLTVKFDKVLGVETYCNDLYSTYKGIAKNGIMVGLRRYRFFVFKDGGKEEKKKDVSTKG 307
Query: 495 ----FASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDV 550
F D ++ D++ K S ARM + ++ +L + + D
Sbjct: 308 VKCYFIRTDSTASIDMQNPYIFAGK----SMHEARMHFMHVNTLSSLPNYMSRYSIDQDD 363
Query: 551 E--VTSDGNTYCFSDGIGKISLSFAR------------------------QVAQKCGLSH 584
+ + +G SDG G IS AR + CG
Sbjct: 364 KDVLDKNGKPCIHSDGTGYISEDLARMCPVNIFKGKSMRSNNIQSKNLNFEGQGPCG-QE 422
Query: 585 TPSAFQIR--YGGY--KGVIAVDRN-SFRKLSLRRSMLK-FESR--------NRMLNVTK 630
P Q R Y GY KG ++ R + +R SM+K +E R N + VT
Sbjct: 423 PPLLIQFRIFYNGYAVKGTFLTNKKLPPRTVQVRPSMIKVYEDRTLSNLSTFNSLEVVTT 482
Query: 631 WSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDS 690
+ L+R +++LLS GV ++ F + + L + + AA +N D
Sbjct: 483 SNPPRKARLSRNLVALLSYGGVPNDFFLNILRNTLEESKTIFYSERAAFKA--AINYGDD 540
Query: 691 KNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILN 750
+ M+L G P EPYL L + + + LK+ R + + ++G D TG L
Sbjct: 541 Q-YTADMILVGI-PLDEPYLKDRLSYLLKTERNALKA-GRFPIDESYYIMGTVDPTGELK 597
Query: 751 YGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMK 810
++ V H + + G VLV +NP LH GD+ VL+A Y
Sbjct: 598 ENEICV---------------ILH-----SGQISGDVLVYRNPGLHFGDIHVLKATYVKA 637
Query: 811 LEEKDYVD----CIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI----PCE-----T 857
LE DYV + FPQKG R +E +GGD DGD++FIS + L+ P E +
Sbjct: 638 LE--DYVGNAKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEHFKPSEPWVSSS 695
Query: 858 EPPMDYTGRRSRIMDHDVTLEEIHKFFVD--YMINDTLG-------AISTAHLVHADRDP 908
+P Y GR+ + + EE+ K F+ + D +G I L D
Sbjct: 696 KPSKIYCGRKPSELSEEELEEELFKMFLKARFCKRDVIGMAADCWLGIMDPFLTLGDESA 755
Query: 909 DKA--RSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLG 966
+ R L L ++ A+D K GA ++P L+ K FP +MER+ K + S +LG
Sbjct: 756 KEKYERKKNILKLIDIYYDALDAPKKGAKVDLPPDLEIKNFPHYMERDPKRDFRSTSILG 815
Query: 967 KLYRATLDS 975
++ T+DS
Sbjct: 816 LIF-DTVDS 823
>gi|242048812|ref|XP_002462152.1| hypothetical protein SORBIDRAFT_02g020722 [Sorghum bicolor]
gi|241925529|gb|EER98673.1| hypothetical protein SORBIDRAFT_02g020722 [Sorghum bicolor]
Length = 88
Score = 113 bits (282), Expect = 7e-22, Method: Composition-based stats.
Identities = 56/90 (62%), Positives = 63/90 (70%), Gaps = 4/90 (4%)
Query: 844 FFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDY-MINDTLGAISTAHLV 902
I+W +IP + + PMDYT R IMDH VTLEEI K FV Y M NDTLG IS HL+
Sbjct: 2 LLITW---MIPEKVDAPMDYTATRPCIMDHAVTLEEIQKHFVSYYMTNDTLGVISIVHLI 58
Query: 903 HADRDPDKARSSKCLHLATLHSMAVDFAKT 932
HAD +P KA S +CL LA LHSMAVDFAKT
Sbjct: 59 HADHNPLKAHSPECLQLAALHSMAVDFAKT 88
>gi|297738765|emb|CBI28010.3| unnamed protein product [Vitis vinifera]
Length = 929
Score = 113 bits (282), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 181/736 (24%), Positives = 296/736 (40%), Gaps = 137/736 (18%)
Query: 465 ILQDGIVIGDKHYEFLAFSASQLR------NNSV---WMFASNDEVSAEDVRGWMGCF-- 513
I ++GI +G + Y F F +SV ++F + +S + V F
Sbjct: 238 IAREGIFVGLRQYRFFVFKDGGKEEKKKNPTSSVKCYFVFMESSALSGKTVHEARCIFMH 297
Query: 514 -NKIRSVSKCAARMGQLFSSSKQTLV----VPVQDVEMIPD------VEVTSDGNTYCFS 562
+ + SV+K AR + S + + V V +Q ++ P V D +
Sbjct: 298 AHMVSSVAKYMARFSLILSKTVKLDVDLSTVNIQRIDDEPGRDEDGHVVYDEDWKPLILT 357
Query: 563 DGIGKISLSFARQVAQKC-------GLSHTPSAFQIRY----GGYKGVIAVDRN-SFRKL 610
DG G IS A + + P Q R KG + ++R R +
Sbjct: 358 DGTGFISEDLALRCPNNLCRGKYMNNGNSDPLLIQCRLFNNGCAVKGTLLLNRKLPPRTI 417
Query: 611 SLRRSMLKFESRNRMLNVT-------KWSESMP--CFLNREIISLLSTLGVKDEVFEAMQ 661
+R SM+K E+ ++ + + + P +L++ +I+LLS GV +E F +
Sbjct: 418 QIRPSMIKVETDPKLSDTQTVNSVEINGTSNQPRRSYLSKYLIALLSYGGVPNEYFMNLL 477
Query: 662 QQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQ 721
+ L + ++ AAL V + +D +I+ +M+L G P EP+L HH
Sbjct: 478 KDALEDAPSVQSSKRAALRVSLRFGEMDD-SIVTRMILSGI-PIDEPFL------HH--C 527
Query: 722 LSDLKSRCRIYVPKGRL-------LIGCFDETGILNYGQVFVRVTMTREELESKDQSFFH 774
LS + + R + G+L L+G D TG L +V + + +
Sbjct: 528 LSFMVNEERKGLRVGKLPVNDCFYLMGTADPTGTLKSDEVCIILDHGQ------------ 575
Query: 775 RVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEE--KDYVDCIIFPQKGERPHPN 832
V+G+VLV K+P LH GD+ VL A Y LEE + I FP KG R +
Sbjct: 576 --------VQGRVLVYKHPGLHFGDIHVLNATYVEALEEFVGNAKYAIFFPIKGPRSLAD 627
Query: 833 ECSGGDLDGDIFFISWDNDLIPC--ETEPPM------DYTGRRSRIMDHDVTLEEIHKFF 884
E + D DGD++++S + L+ +EP M +R D E+ + F
Sbjct: 628 EMANSDFDGDMYWVSRNQQLLQYFRASEPWMRKRSTRHVPSKRPTDFSPDELEHELFQLF 687
Query: 885 VD--YMINDTLGAISTAHLVHADR---------DPDKARSSKCLHLATLHSMAVDFAKTG 933
+ + + +G + LV DR D + K L L ++ A+D K+G
Sbjct: 688 LTTRFQTSSAIGMAADNWLVFMDRLLTLRDDCSDEKECLKRKMLELTDIYYDALDAPKSG 747
Query: 934 APAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNA-IWSEKIAEA 992
+ LK ++FP FM RE Y S +LG++Y A + +S IW +
Sbjct: 748 MKVNVSKELKAEKFPHFMGRESS--YHSTSILGQIYDAVESFQPENQSTKEIWRLPL--- 802
Query: 993 SYDHDLEVDGF-EAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRD 1051
+D +A L + + Y EM A + +G T+DE + L
Sbjct: 803 -----FNIDAVPQACLRSWKDRYDQYRSEMAAALQ-HGGETKDEYAAEVINKYKQIL--- 853
Query: 1052 NRRYGDMKDRILLSAKNLQNEAKEWFGSSCKENEHPQLASAWYHVTYSPSYCKERMALLS 1111
YG + S +NL++ E A A YHVTY R++ +
Sbjct: 854 ---YGAAE--FEESPRNLEDIFDE--------------ALAIYHVTYEFVINGARVSYCN 894
Query: 1112 FPW-IVGDILLNIKSV 1126
FPW + G L + +V
Sbjct: 895 FPWRVAGRALCKLYTV 910
>gi|226294787|gb|EEH50207.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
Length = 615
Score = 111 bits (278), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 94/294 (31%), Positives = 138/294 (46%), Gaps = 29/294 (9%)
Query: 297 GFNLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKL-------- 348
G +L + V+FQL LV N +S V A + ++ L +V+Q L KL
Sbjct: 315 GGDLPYRVMFQLQKLVWNGAISPVNAISFAYRVGKELVDADLDVVVQALDKLERDIQWPS 374
Query: 349 ---KSICYDPVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPE 405
++ D V+ +K + L + LS R I N + +RA VTP IY GP+
Sbjct: 375 PDVQASEVDVVALMKLFANALEIVLRERALSRSNRQIHLNNILIHRAQVTPCGIYLYGPQ 434
Query: 406 LETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTI 465
LET N V++ + F+RV FV+E S P S + IF SR +
Sbjct: 435 LETKNRVLRIYEANVDHFLRVEFVDE--SGDPIRYDSRASVDAIFQ--------SRFKGV 484
Query: 466 LQDGIVIGDKHYEFLAFSASQLRNNSVWMFA----SNDEVSAEDVRGWMGCFNKIRSVSK 521
L++GI I + +EFL FS S LR+ + W A +A + +G F+ I S +K
Sbjct: 485 LKEGITIAGRKFEFLGFSHSSLRSQTCWFVAPFVSGGTLYNATVIIQNLGRFDHIHSPAK 544
Query: 522 CAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQ 575
AAR+GQ FS + ++ + + + DVE N FSDG+G IS S Q
Sbjct: 545 QAARIGQTFSDTLTSIPISFDMLSVGEDVE----RNGRVFSDGVGTISPSLMSQ 594
>gi|225445110|ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis
vinifera]
Length = 943
Score = 111 bits (278), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 183/743 (24%), Positives = 297/743 (39%), Gaps = 145/743 (19%)
Query: 465 ILQDGIVIGDKHYEFLAFSASQLR------NNSV---WMFASNDEVSAEDVRGWMGCF-- 513
I ++GI +G + Y F F +SV ++F + +S + V F
Sbjct: 246 IAREGIFVGLRQYRFFVFKDGGKEEKKKNPTSSVKCYFVFMESSALSGKTVHEARCIFMH 305
Query: 514 -NKIRSVSKCAARMGQLFSSSKQTLV----VPVQDVEMIPD------VEVTSDGNTYCFS 562
+ + SV+K AR + S + + V V +Q ++ P V D +
Sbjct: 306 AHMVSSVAKYMARFSLILSKTVKLDVDLSTVNIQRIDDEPGRDEDGHVVYDEDWKPLILT 365
Query: 563 DGIGKISLSFARQVAQK--------------CGLSHTPSAFQIRY----GGYKGVIAVDR 604
DG G IS A + C S P Q R KG + ++R
Sbjct: 366 DGTGFISEDLALRCPNNLCRGKYMNNGNSDVCD-SRYPLLIQCRLFNNGCAVKGTLLLNR 424
Query: 605 N-SFRKLSLRRSMLKFESRNRMLNVT-------KWSESMP--CFLNREIISLLSTLGVKD 654
R + +R SM+K E+ ++ + + + P +L++ +I+LLS GV +
Sbjct: 425 KLPPRTIQIRPSMIKVETDPKLSDTQTVNSVEINGTSNQPRRSYLSKYLIALLSYGGVPN 484
Query: 655 EVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMML 714
E F + + L + ++ AAL V + +D +I+ +M+L G P EP+L
Sbjct: 485 EYFMNLLKDALEDAPSVQSSKRAALRVSLRFGEMDD-SIVTRMILSGI-PIDEPFL---- 538
Query: 715 LSHHENQLSDLKSRCRIYVPKGRL-------LIGCFDETGILNYGQVFVRVTMTREELES 767
HH LS + + R + G+L L+G D TG L +V + + +
Sbjct: 539 --HH--CLSFMVNEERKGLRVGKLPVNDCFYLMGTADPTGTLKSDEVCIILDHGQ----- 589
Query: 768 KDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEE--KDYVDCIIFPQK 825
V+G+VLV K+P LH GD+ VL A Y LEE + I FP K
Sbjct: 590 ---------------VQGRVLVYKHPGLHFGDIHVLNATYVEALEEFVGNAKYAIFFPIK 634
Query: 826 GERPHPNECSGGDLDGDIFFISWDNDLIPC--ETEPPM------DYTGRRSRIMDHDVTL 877
G R +E + D DGD++++S + L+ +EP M +R D
Sbjct: 635 GPRSLADEMANSDFDGDMYWVSRNQQLLQYFRASEPWMRKRSTRHVPSKRPTDFSPDELE 694
Query: 878 EEIHKFFVD--YMINDTLGAISTAHLVHADR---------DPDKARSSKCLHLATLHSMA 926
E+ + F+ + + +G + LV DR D + K L L ++ A
Sbjct: 695 HELFQLFLTTRFQTSSAIGMAADNWLVFMDRLLTLRDDCSDEKECLKRKMLELTDIYYDA 754
Query: 927 VDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNA-IW 985
+D K+G + LK ++FP FM RE Y S +LG++Y A + +S IW
Sbjct: 755 LDAPKSGMKVNVSKELKAEKFPHFMGRESS--YHSTSILGQIYDAVESFQPENQSTKEIW 812
Query: 986 SEKIAEASYDHDLEVDGF-EAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNR 1044
+ +D +A L + + Y EM A + +G T+DE +
Sbjct: 813 RLPL--------FNIDAVPQACLRSWKDRYDQYRSEMAAALQ-HGGETKDEYAAEVINKY 863
Query: 1045 ASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSCKENEHPQLASAWYHVTYSPSYCK 1104
L YG + S +NL++ E A A YHVTY
Sbjct: 864 KQIL------YGAAE--FEESPRNLEDIFDE--------------ALAIYHVTYEFVING 901
Query: 1105 ERMALLSFPW-IVGDILLNIKSV 1126
R++ +FPW + G L + +V
Sbjct: 902 ARVSYCNFPWRVAGRALCKLYTV 924
>gi|237843439|ref|XP_002371017.1| RNA dependent RNA polymerase domain-containing protein [Toxoplasma
gondii ME49]
gi|211968681|gb|EEB03877.1| RNA dependent RNA polymerase domain-containing protein [Toxoplasma
gondii ME49]
gi|221502280|gb|EEE28013.1| RNA-dependent RNA polymerase, putative [Toxoplasma gondii VEG]
Length = 1186
Score = 110 bits (276), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 132/527 (25%), Positives = 204/527 (38%), Gaps = 160/527 (30%)
Query: 393 LVTPMKIYCLGPELETSNYVVKNFAK--YASDFMRVTFVEEDWSKLPANALSTSIQRGIF 450
LVTP+K+ G E + + + +A A +R+ FVEED A+S+S+ R
Sbjct: 307 LVTPLKVLLKGVYSELGSRLTRQYANEVAAGLLVRLAFVEED-----GKAMSSSLHRA-- 359
Query: 451 SKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWM 510
QD + D+ N E+SAE + M
Sbjct: 360 ----------------QDA-PLEDR----------------------NKELSAEAILSRM 380
Query: 511 GCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTS---------------- 554
G FN S R+G FSS+ T+ V +++ ++PDV ++
Sbjct: 381 GVFNSSISPGVLTKRLGICFSSTLPTIDVRDEEMLLVPDVTSSAVTAAMSGEAQRRKGDE 440
Query: 555 -----------DGNT--YCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIA 601
D N+ + F+DG G ISL R++ T SAFQIR GG KG++
Sbjct: 441 ERRISSRAIKLDPNSPEFIFTDGSGAISLDLWRRIVACLPALRTSSAFQIRLGGIKGMLL 500
Query: 602 VD---------RNSFRKLSLRRSMLKFESRNRM--------------------------- 625
+ + L + +SM KF SR+R+
Sbjct: 501 LHPAFPLPRPPAPRLKHLLISQSMYKFHSRSRIRKSAEANPGKAKLAWRFSDMASVSLLQ 560
Query: 626 -LNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKM-LINREAALDVLQ 683
L + +S +P FLNR++I LL TLGV+ VF+ +Q++ L L + R+ D
Sbjct: 561 CLEINDFSRRLPYFLNRQVILLLDTLGVEFSVFDRLQRRMLHFLRDIDTRGRKPRRDAES 620
Query: 684 KLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCF 743
++ L + + G P EP+L L + + DL+ + RI+V KG L G
Sbjct: 621 LGTSRFAQTCLEFVSVHGVSPK-EPFLRACLEAMRNSLADDLRKKARIFVEKGANLFGVP 679
Query: 744 DETGILNYG----------------QVFVRVTMT---------REELESKDQSF------ 772
D T L Y +V V VT + R + S+ S
Sbjct: 680 DFTHSLAYDHGWRSSPSGRLYAGLPEVCVHVTKSPVSDSEIPRRTAIASRHGSLSPEADA 739
Query: 773 -------------FHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAV 806
H + +++G V V +NPCL PGD+++ AV
Sbjct: 740 EAERPKRRLSSCGSHSLGAGAELIQGVVAVCRNPCLLPGDIQLCFAV 786
>gi|397621217|gb|EJK66181.1| hypothetical protein THAOC_12913, partial [Thalassiosira oceanica]
Length = 906
Score = 108 bits (270), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 107/381 (28%), Positives = 176/381 (46%), Gaps = 64/381 (16%)
Query: 383 DHNVMSCYRALVTPMKIYCLGPELETSNYVVK---NFAKYA-SDFMRVTFVEEDWSKLPA 438
D +S R L++P+++ + E SN V+ N K++ S F+R+T +E+ KL
Sbjct: 557 DDFCVSLPRVLLSPLRLSITAFQSEMSNRFVRLFINRHKFSESAFVRLTIGDENGDKLFG 616
Query: 439 NALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASN 498
LS ++ RI ++ G+ +G K Y FLA+S+SQL+ S+W+ +
Sbjct: 617 GELSRQVE-------------ERIRQLILQGVRLGGKTYHFLAYSSSQLKEQSMWLVCAE 663
Query: 499 DEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFS--------SSKQTLVVPVQDVEMIPDV 550
S + +R MG F+ S SK AAR+GQ FS S ++ + V+D +PD
Sbjct: 664 RGWSVDSMRDLMGDFSMCESPSKYAARVGQCFSTTVTVSTRSHRRNDGLRVKDD--LPD- 720
Query: 551 EVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTP---------SAFQIRYGGYKGV-I 600
+ S + SDG G I +V K L P SA Q R GG KGV +
Sbjct: 721 -IPSSIESLVHSDGCGLIR----HEVLLKSVLPLVPYAPRFKSDISAIQFRCGGAKGVLV 775
Query: 601 AVDRNSFR----KLSLRRSM-----LKFESRNRMLNVTKWSESMPCFLNREIISLLSTLG 651
D N+ + LR S ++ L + W R++I L + LG
Sbjct: 776 GWDFNTLGIQNYDVCLRPSQGVSICMRGIGGTHQLGI-DW---------RQVILLGTHLG 825
Query: 652 VKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNI--LVKMLLQGYEPNVEPY 709
+ EVF ++Q + + L +ML++ A + + G+D++ + L ML G +P+ +P+
Sbjct: 826 ISGEVFLSLQDEMMSSLNRMLVDARFAAQYVPFIGGIDAEIVTSLCDMLASGLKPSRDPF 885
Query: 710 LSMMLLSHHENQLSDLKSRCR 730
L L + + L L+ + R
Sbjct: 886 LYSCLHATRSHHLMGLRKKAR 906
>gi|221481781|gb|EEE20151.1| RNA-dependent RNA polymerase, putative [Toxoplasma gondii GT1]
Length = 1186
Score = 108 bits (269), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 130/527 (24%), Positives = 203/527 (38%), Gaps = 160/527 (30%)
Query: 393 LVTPMKIYCLGPELETSNYVVKNFAK--YASDFMRVTFVEEDWSKLPANALSTSIQRGIF 450
LVTP+K+ G E + + + +A A +R+ FVEED A+S+S+ R
Sbjct: 307 LVTPLKVLLKGVYSELGSRLTRQYANEVAAGLLVRLAFVEED-----GKAMSSSLHRA-- 359
Query: 451 SKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWM 510
QD + D+ N E+SAE + +
Sbjct: 360 ----------------QDA-PLEDR----------------------NKELSAEAILSRL 380
Query: 511 GCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTS---------------- 554
G FN S R+G FSS+ T+ V +++ ++PDV ++
Sbjct: 381 GVFNSSISPGVLTKRLGICFSSTLPTIDVRDEEMLLVPDVTSSAVTAAMSGEAQRRKGEE 440
Query: 555 -----------DGNT--YCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIA 601
D N+ + F+DG G ISL R++ T SAFQIR GG KG++
Sbjct: 441 ERRISSRGIKLDPNSPEFIFTDGSGAISLDLWRRIVACLPALRTSSAFQIRLGGIKGMLL 500
Query: 602 VD---------RNSFRKLSLRRSMLKFESRNRM--------------------------- 625
+ + L + +SM KF SR+R+
Sbjct: 501 LHPAFPLPRPPAPRLKHLLISQSMYKFHSRSRIRKSAESNPGKAKLAWRFSGMASVSFLQ 560
Query: 626 -LNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQK 684
L + +S +P FLNR++I LL TLGV+ VF+ +Q++ L L + +
Sbjct: 561 CLEINDFSRRLPYFLNRQVILLLDTLGVEFSVFDRLQRRMLHFLRDIDTRGRKPRREAES 620
Query: 685 LNGVD-SKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCF 743
L ++ L + + G P EP+L L + + DL+ + RI+V KG L G
Sbjct: 621 LGTSRFAQTCLEFVSVHGVSPK-EPFLRACLEAMRNSLADDLRKKTRIFVEKGANLFGVP 679
Query: 744 DETGILNYG----------------QVFVRVTMT---------REELESKDQSF------ 772
D T L Y +V V VT + R + S+ S
Sbjct: 680 DFTHSLAYDHGWRSSPSGRLYAGLPEVCVHVTKSPVSDSEIPRRTAIASRHGSLSPEADA 739
Query: 773 -------------FHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAV 806
H + +++G V V +NPCL PGD+++ AV
Sbjct: 740 EAERPKRRLISCGSHSLGAGAELIQGVVAVCRNPCLLPGDIQLCFAV 786
>gi|449436040|ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cucumis
sativus]
Length = 1056
Score = 107 bits (268), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 117/416 (28%), Positives = 182/416 (43%), Gaps = 60/416 (14%)
Query: 589 FQIRYGGY--KGVIAVDRN-SFRKLSLRRSMLK---------FESRNRMLNVTKWSESMP 636
F++ Y G KG +++ R + +R SM+K FE+ N + V +
Sbjct: 521 FRLFYNGLAVKGTFLLNKQLPPRTIQIRDSMIKVEIDPDLENFETENSLELVGTSNPPKR 580
Query: 637 CFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILV- 695
FL+R +I+LL+ GV E F + L + + ++ AAL V +N + + LV
Sbjct: 581 TFLSRNLIALLNYGGVPREYFMNILVDALKDVQGVFSSKRAALRV--SINNGEMDDFLVA 638
Query: 696 KMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVF 755
+M+L G P E YL L + + LKS R++VP+ L+G D T L G+V
Sbjct: 639 RMILAGI-PLDESYLQYRLSVLLKEEKKSLKS-GRLHVPECYYLMGTVDPTFTLESGEVC 696
Query: 756 VRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEE-- 813
V + + + GKVLV +NP LH GD+ VL A Y KL
Sbjct: 697 VILYNGQ--------------------INGKVLVYRNPGLHFGDIHVLTAKYVEKLVPVV 736
Query: 814 KDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI----PCETEPPMD----YTG 865
+ I F KG R +E +GGD DGD++++S ++ L+ PCE P T
Sbjct: 737 GNAKYAIFFSSKGPRSVADEIAGGDFDGDMYWVSRNSQLLEYFRPCEPWRPSPSTEVVTN 796
Query: 866 RRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAH-----------LVHADRDPDKARSS 914
++ + D E+ K F+ + A L ++ +
Sbjct: 797 KKPKEFSADELENELFKLFLSTRFQPSYAKSVAADNWLALMDQFLMLGEERKEERNCIRA 856
Query: 915 KCLHLATLHSMAVDFAKTGAPA-EMPLALKPKEFPDFMEREDKPRYISFGVLGKLY 969
K L L ++ A+D K G E+P LK P FMER K Y+S +LG+++
Sbjct: 857 KILQLINIYYDALDAPKKGGKKIEVPKHLKAGTLPHFMER-GKNSYVSTSILGQIF 911
>gi|3687226|gb|AAC62124.1| hypothetical protein [Arabidopsis thaliana]
Length = 905
Score = 107 bits (268), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 147/595 (24%), Positives = 236/595 (39%), Gaps = 124/595 (20%)
Query: 459 YSRILTILQDGIVIGDKHYEFLAFS----ASQLRNNSVWMF----------ASND----- 499
YS+ I ++GI++G + Y+F F A + + NS AS+D
Sbjct: 273 YSKYKEIAKNGIMVGLRRYQFFVFKDGGKAEKKKRNSTKQVKCYFIRTGSTASSDMENPY 332
Query: 500 ---EVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQ-DVEMIPDVE---- 551
+S + R + + S + AR + S +K+ V + V I D+
Sbjct: 333 ILSGMSIHEARMHFMHVHTLPSPANYMARFSLILSKTKKLEVDMTEITVMQIDDIHCHDQ 392
Query: 552 -----VTSDGNTYCFSDGIGKISLSFARQVA--------------QKCGLSHTPSAFQIR 592
+ +G SDG G IS AR Q + P QIR
Sbjct: 393 SNNDVLDKNGKPRIHSDGTGYISEDLARMCPLNIFKGKSMRSNNIQGTCVQEPPLLIQIR 452
Query: 593 Y----GGYKGVIAVDRN-SFRKLSLRRSMLK---------FESRNRMLNVTKWSESMPCF 638
KG+ +++N + + +R SM+K F + N + VT +
Sbjct: 453 MFNDGSAVKGIFLLNKNLPPQTVQVRPSMIKVYKDKNLSNFSTFNSLEVVTTSNPPKRAK 512
Query: 639 LNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKML 698
L++ +++LLS GV ++ F + L + AA +D KN L +M+
Sbjct: 513 LSKNLVALLSYGGVPNDFFLDILLNTLEKKKTIFFKVRAAGKAALHYGNMDDKNAL-QMI 571
Query: 699 LQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRV 758
+ G P EPYL L + + DLK+ ++ + + L+G D TG L
Sbjct: 572 MAGI-PLDEPYLKHYLSKLLKLEKDDLKA-GKLPIDESYYLMGTVDPTGELK-------- 621
Query: 759 TMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVD 818
+ +V V NP LH GD+ +L+A Y LE+ YV
Sbjct: 622 -------------------------EDEVCVILNPGLHFGDIHILKATYVKSLEQ--YVG 654
Query: 819 ----CIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI-------PCETEPPMD--YTG 865
+ FPQKG R +E +GGD DGD++FIS + L+ P + P YTG
Sbjct: 655 NSKYGVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEHYKPSEPWVSSSPRSKIYTG 714
Query: 866 RRSRIMDHDVTLEEIHKFFVD--YMINDTLGAISTAHLVHADR---------DPDKARSS 914
R+ + + EE+ K F+ + + +G + + L DR
Sbjct: 715 RQPSELSPEQLEEELFKIFLKTGFSPSSVIGQAADSWLAIMDRFLTLGDENVKEKAEMKK 774
Query: 915 KCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLY 969
K L L ++ A+D KTG +PL +K FP +MER + S +LG ++
Sbjct: 775 KMLKLTDIYYDAIDAPKTGTEVNLPLDVKVDLFPHYMERNKT--FKSTSILGLIF 827
>gi|170579664|ref|XP_001894930.1| RNA-directed RNA polymerase 1 [Brugia malayi]
gi|158598304|gb|EDP36223.1| RNA-directed RNA polymerase 1, putative [Brugia malayi]
Length = 312
Score = 106 bits (265), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 112/216 (51%), Gaps = 21/216 (9%)
Query: 391 RALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIF 450
+ ++TP +I + PEL N V++ F K + +R+ F ++D + L N + G+F
Sbjct: 79 KVIITPTRIILVVPELLMGNRVLRTFDKDGNGALRIQFRDDDGTPLRVNTV------GLF 132
Query: 451 SKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWM 510
I + L GI IGD+H+ +L S SQ+R+N + + A +R +
Sbjct: 133 L------IQTTTFNTLSRGIYIGDRHFVYLGSSNSQMRDNGCYFYDDGKGGQAHKIREQL 186
Query: 511 GCFNKIRSVSKCAARMGQLFSSSKQ-TLVVPVQDVEMIPDVEVTSDGN--TYCFSDGIGK 567
G F+ ++ K +RMGQ F+ +K+ +++ Q D+ D N +Y FSDG+GK
Sbjct: 187 GKFDSC-NIPKMMSRMGQCFTQAKRCKVILKRQKYNKTYDIIGGRDTNQASYIFSDGVGK 245
Query: 568 ISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVD 603
+S FA ++A GL + IR+ G KGV+++D
Sbjct: 246 VSKEFAEKIAFDIGLGTS-----IRHRGIKGVLSID 276
>gi|345562071|gb|EGX45143.1| hypothetical protein AOL_s00173g244 [Arthrobotrys oligospora ATCC
24927]
Length = 1092
Score = 105 bits (262), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 122/497 (24%), Positives = 228/497 (45%), Gaps = 79/497 (15%)
Query: 469 GIVIGDKHYEFL-------AFSASQLRNNSVWMFA-SNDEVSAEDVR---GWM--GCFNK 515
G+ I +H+E + A + + ++SV MFA S D++ + V WM N+
Sbjct: 306 GMDILGRHWEAIHASDISKADKEADMESSSVIMFAVSGDDIPTQAVSQPIKWMISPSQNQ 365
Query: 516 IRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQ 575
S +K AR+ FS +T++VP+++V++ + ++ S + +DG G + + +
Sbjct: 366 EMSTAKYNARIKLGFS---RTVLVPLENVQIKEEKDLVST-IKFPMTDGCGTATFAVLKA 421
Query: 576 VAQKCGLSHTPSAFQIRYGGYKGVIAVD-RNSFR---KLSLRRSMLKFESRNRM-LNVTK 630
+A+K GL + PS FQIR+GG KG+I +D NS +++ R++ +KFE+R + + V
Sbjct: 422 IAEKMGLDYVPSYFQIRHGGRKGLILLDVENSDSESLRITYRKTQIKFETRQDLNIEVVD 481
Query: 631 WSESMP-CFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKM-LINR------------E 676
++ + + + +++L GV E + ++++ G L+ R
Sbjct: 482 YARPLKRGKITSQFLTILHNGGVSKETLGNLAKEEIEKDGIWELLERAGDPSFVKNFYQS 541
Query: 677 AALDVLQKLNG---------VDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKS 727
AL + +G ++ +++M+ G+ + L ++ ++N+L D +
Sbjct: 542 GALKKRRDKDGCFKYAGSMPASAEERIIQMVDAGFAVSECLVLKNLISGCNKNRL-DSWN 600
Query: 728 RCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKV 787
+ + + + D +L G+VF++ S D F+ D + GKV
Sbjct: 601 DLKFTISESTSVKCAPDFKKVLREGEVFLQF--------SSDGFVFN--DKLLKFLSGKV 650
Query: 788 LVTKNPCLHPGDVRVLEAVYEMKLEEK--DYVDCIIFPQKGERPHPNECSGGDLDGDIFF 845
LV ++P D++ AV ++ E D VDCI+FP GE + SGGD DGD
Sbjct: 651 LVGRSPAYIASDIQSAIAVMNPEVLEAYGDLVDCIVFPIVGEYSLASRLSGGDYDGDSVL 710
Query: 846 ISWDNDLI-PCETEPPMDYTGRRSRI------------------MDHDVTLEEIHKFFVD 886
+ WD ++ P + P T R + MD D T++ I + +
Sbjct: 711 VIWDQRVVEPFSSRLPPKSTSVRKDLFKESTEQDTVGCYLKDNEMDEDATIKAILRAEIP 770
Query: 887 YMINDTLGAISTAHLVH 903
M++D+ I T L+H
Sbjct: 771 KMLSDSNVGICT--LMH 785
>gi|156374435|ref|XP_001629812.1| predicted protein [Nematostella vectensis]
gi|156216821|gb|EDO37749.1| predicted protein [Nematostella vectensis]
Length = 110
Score = 104 bits (259), Expect = 3e-19, Method: Composition-based stats.
Identities = 53/124 (42%), Positives = 71/124 (57%), Gaps = 14/124 (11%)
Query: 726 KSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKG 785
K+R R+ VPK R++ G D +L G+ + R ++ E D+ F +
Sbjct: 1 KTRLRVLVPKSRMVFGVCDPYEVLRQGECYFRPSIFDE-----DEGDFQAAN-------- 47
Query: 786 KVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFF 845
KV V +NPC HPGDVRVL+ V K E DCI+FP +G RPH ECSG D+DGD FF
Sbjct: 48 KVAVIRNPCYHPGDVRVLKLVRN-KPELNHLRDCIVFPVRGRRPHALECSGADMDGDKFF 106
Query: 846 ISWD 849
++WD
Sbjct: 107 VTWD 110
>gi|3687225|gb|AAC62123.1| hypothetical protein [Arabidopsis thaliana]
Length = 929
Score = 103 bits (258), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 155/588 (26%), Positives = 240/588 (40%), Gaps = 131/588 (22%)
Query: 451 SKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQ-----------------LRNNSVW 493
S Y Y I ++GI+IG + Y+F F +R +S
Sbjct: 226 SSTYSIDHYFTYKGIAKNGIMIGLRRYQFFVFKDGGKEEKKKDLSTKKVKCYFIRTDSTA 285
Query: 494 MFASNDEV-----SAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDV--EM 546
+ + S + R ++ +++ AR + S +K TL V + + +
Sbjct: 286 FYDMQNPYILTGKSIYEARMHFMHVHRAPTLANYMARFSLILSKTK-TLEVDMTGITFDQ 344
Query: 547 IPDV--------EVTSDGNTYCF-SDGIGKISLSFARQVA-----QKCGLSHT--PSAFQ 590
I D+ +V C SDG G IS AR KC S + P Q
Sbjct: 345 IDDIHCHDQDGKDVLDKNKKPCIHSDGTGYISEDLARMCPLNIFKGKCLRSESIQPLLIQ 404
Query: 591 IR--YGGY--KGVIAVDRN-SFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIIS 645
R Y GY KG +++ R + +R SM+K P N +
Sbjct: 405 FRMFYDGYAVKGTFLLNKKLCPRTVQVRPSMIKVSKD-------------PSLSNFSTFN 451
Query: 646 LLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPN 705
L + + ++F A AAL+ + + ++ ILV + L EP+
Sbjct: 452 ALEVVTTRSQIFGA-----------------AALNYGEMDDQNAAQMILVGIPLD--EPH 492
Query: 706 VEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREEL 765
++ YLS++L + + +DLK+ ++ V + L+G D TG L +V V L
Sbjct: 493 LKNYLSILL----KTEKNDLKA-GKLPVTESYYLMGTVDPTGALKEDEVCVI-------L 540
Query: 766 ESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVD----CII 821
ES + G+VLV +NP LH GD+ +L+A Y LEE YV +
Sbjct: 541 ESGQ-------------ISGEVLVYRNPGLHFGDIHILKATYVKALEE--YVGNSKFAVF 585
Query: 822 FPQKGERPHPNECSGGDLDGDIFFISWDNDLI----PCE-----TEPPMDYTGRRSRIMD 872
FPQKG R +E +GGD DGD++FIS + +L+ P E T P +GR +
Sbjct: 586 FPQKGPRSLGDEIAGGDFDGDMYFISRNPELLENFKPSEPWVSLTPPSKSNSGRAPSQLS 645
Query: 873 HDVTLEE---------IHKFFVDYMINDTLGAISTAHLVHA-DRDPDKAR-SSKCLHLAT 921
+ EE H V + D+ I L+ DR +KA K L L
Sbjct: 646 PEELEEELFEMFLTAGFHASNVIGIAADSWLTIMDRFLILGDDRAEEKAEMKKKMLELID 705
Query: 922 LHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLY 969
++ A+D K G +P LKP FP +MER+ K + S +LG ++
Sbjct: 706 IYYDALDAPKKGDKVYLPNKLKPDIFPHYMERDKK--FQSTSILGLIF 751
>gi|222617921|gb|EEE54053.1| hypothetical protein OsJ_00746 [Oryza sativa Japonica Group]
Length = 1148
Score = 103 bits (256), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 154/584 (26%), Positives = 237/584 (40%), Gaps = 115/584 (19%)
Query: 487 LRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQ--LFSSSKQTLVVPVQDV 544
+R S W +S + F IR+V A M + L S TL V + +V
Sbjct: 461 VRTESGWNMDEPYILSGRTIGQARDLFMHIRTVLTLAKYMLRFALIVSKTITLDVDLSEV 520
Query: 545 --EMIPD--------VEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHT--------P 586
++I D EV DG +DG G IS +AQKC S++ P
Sbjct: 521 LVKLIDDEPCLDEHGKEVFRDGERLIHTDGTGLIS----EDLAQKCTYSNSKGKLLEPQP 576
Query: 587 SAFQIR--YGG--YKGVIAVD-RNSFRKLSLRRSMLKF---------------------- 619
Q+R Y G KG + VD R R + +R SMLK
Sbjct: 577 LLIQLRLFYNGSAVKGTVLVDKRLPPRTIHIRPSMLKIKTYPELSGVQSVNSLDIVSARN 636
Query: 620 --------ESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKM 671
+S N V+ + S F + +I+LL GV +E F + Q +
Sbjct: 637 AKKSLSGVQSVNSFEIVSTSNRSGRTFTSNNLIALLHYGGVPEEFFMELLQTAIEEADNA 696
Query: 672 LINREAALDVLQKLNGVDSKNIL-VKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRC- 729
+ AL++ N D ++ + +M+L G P E YL L + LS L+ +
Sbjct: 697 RFDYAGALNI--AFNYADMEDSMPARMILSGI-PLEESYLQSRL-----DFLSLLERKGI 748
Query: 730 ---RIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGK 786
+I + L+G D TG L +V V + + V G
Sbjct: 749 KNGKIPIDDCYYLMGTADPTGKLGPNEVCVILDYGQ--------------------VSGD 788
Query: 787 VLVTKNPCLHPGDVRVLEAVYEMKLEE--KDYVDCIIFPQKGERPHPNECSGGDLDGDIF 844
VLV K P LHPGD+ VL+A Y +E+ + I+FP G+R +E + D DGDI+
Sbjct: 789 VLVYKYPGLHPGDIHVLKATYSSDIEKVVGNSKHAILFPTTGQRSLADEMANSDFDGDIY 848
Query: 845 FISWDNDLI----PCET-EPPMDYTGRRSRIMD--HDVTLEEI--HKFF-VDYMINDTLG 894
++S + L+ P + P + G + + + ++ LE + H+F + +
Sbjct: 849 WVSLNPKLLEHFKPSKPWVPAITPNGTKQKGPEDFNESELERVLFHEFLKTRFAPSYARA 908
Query: 895 AISTAHLVHADR--------DPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKE 946
+T LV+ DR K K L L L+ +A+D K G +P L K+
Sbjct: 909 TAATNWLVYMDRLLTVSLDESEKKLIEKKMLKLVDLYYLALDAPKMGNKVNIPRDLMVKQ 968
Query: 947 FPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIA 990
+P FM+R P Y S +LGK+Y D +RS+ + I+
Sbjct: 969 YPHFMDR--SPSYHSSSILGKIYDKAGDP-KPLRSDNVQPTSIS 1009
>gi|290988454|ref|XP_002676936.1| predicted protein [Naegleria gruberi]
gi|284090541|gb|EFC44192.1| predicted protein [Naegleria gruberi]
Length = 1745
Score = 102 bits (255), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 125/506 (24%), Positives = 211/506 (41%), Gaps = 110/506 (21%)
Query: 537 LVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHT----------- 585
L P+ I + +V D F+DG G IS AR++ +K + +
Sbjct: 471 LNTPISPTINISEYQVIED--VGLFTDGCGFISPDLAREIYRKIKQAESREKVHVFENAQ 528
Query: 586 -----------------------PSAFQIRYGGYKGVIAVDRNSFRKLSLRRSMLKFESR 622
PSAFQIR+ G KG++ + N + + LR SM+KF
Sbjct: 529 YMVDVQMIYQDSDPVEDDMDDNVPSAFQIRFRGAKGMLLQNPN-VKGIVLRESMVKFNVD 587
Query: 623 NRM-----------LNVTKWSE-SMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGK 670
++V +SE S F N I+ ++S E FE + ++ + K
Sbjct: 588 LDEDLDEEDESLSNIHVVGYSEPSNFAFANSTILYMMSGCVDGGEKFEGI----IMNMWK 643
Query: 671 MLINREAALDVLQKLNGVDSKNILVKMLLQG--YEPNV----EPYLSMMLLSHHENQLSD 724
+N D+L+ + D+ ++ K +G + N+ + L QL +
Sbjct: 644 DYVN-----DILKTYSNEDTSQLMKKYFKEGDFHALNIFGLTKDVALAFLAGPFRTQLLN 698
Query: 725 LKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVK 784
LK + + R + G D +L +VFVR+ M D ++
Sbjct: 699 LK----LPIQNARRVYGVCDPLEVLEPDEVFVRIRME---------------DGTLKTLE 739
Query: 785 GKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYV-DCIIFPQKGE-RPHPNECSGGDLDGD 842
G + +TK PCLH GD+R+L+A K+E +Y+ + I+FP KGE RP PN +G DLDGD
Sbjct: 740 GTIAITKEPCLHRGDLRLLKA---KKIESLEYLSEVIVFPIKGEKRPIPNMITGSDLDGD 796
Query: 843 IFFISWDNDLIPC---ETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTA 899
+ + WD L+ + EP + D +E + F + D +G + +
Sbjct: 797 KYLVIWDEPLVSSFVQQFEPG-----------NFDEEIEGEKRNFEPDVFKDWIG-LRHS 844
Query: 900 HLVHADRDPDKARSSKCLH-LATLHSMAVDFAKTG-----APAEMPLALKPKEFPDFMER 953
++ + K + K + L+ + +MAVD K G E + ++P F
Sbjct: 845 YVDSYGYEWSKGENWKTMQRLSDIVNMAVDAPKKGKTFKAGAMEKDIVRNFPKYPHFHNS 904
Query: 954 EDKPRY-ISFGVLGKLYRATLDSIMQ 978
+ K +S V+GK+Y +D + +
Sbjct: 905 KTKEAVRVSTSVVGKMYDFAIDRVTE 930
>gi|361130936|gb|EHL02666.1| putative RNA-dependent RNA polymerase 2 [Glarea lozoyensis 74030]
Length = 902
Score = 102 bits (254), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 96/306 (31%), Positives = 137/306 (44%), Gaps = 53/306 (17%)
Query: 814 KDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDH 873
KD VD QKG R P++ SGGDLDGD ++I WD P T DY +
Sbjct: 531 KDTVD-----QKGARDLPSKLSGGDLDGDRYYIMWDELARPKRTFAAADYPKVSPVNIGR 585
Query: 874 DVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTG 933
V E++ FF+ +M +D LG I+ H V AD+ P +CL +A +HS AVDF+KTG
Sbjct: 586 RVEREDMSDFFLQFMESDQLGRIAVNHRVKADQRPGGTNDPECLLMAEMHSTAVDFSKTG 645
Query: 934 APAEMP-LALKPKEFPDF------------------------MEREDKPR-------YIS 961
P +M + K PDF ME ED+ Y S
Sbjct: 646 IPVDMSRMPFGNKYRPDFEAPGPHVHIEEDGINFDDPTFEDPMEIEDEDDEYSTYRYYKS 705
Query: 962 FGVLGKLYRAT----LDSIMQIRSNAIWS---EKIAEASYDH-DLEVDG--FEAFLGVAE 1011
+LGKLYRA + + +Q R A S +I + +++ V G +E L A
Sbjct: 706 EKILGKLYRAIDEREIFAKIQARVEAEGSARRSRIIDKVWEYVQKRVVGIQWEYLLDQAS 765
Query: 1012 SHKEMYEEEMNALMNYYGAS-----TEDEILTGNLRNRASYLQRDNR-RYGDMKDRILLS 1065
++MYE+ + M Y + +E E TGN+ + + R R MK++ L
Sbjct: 766 DIRDMYEDCLRDTMVEYSSHPSRPLSELEAFTGNILGKTGIQNKYQRERSKTMKEKFDLD 825
Query: 1066 AKNLQN 1071
A + N
Sbjct: 826 ATWIIN 831
Score = 43.9 bits (102), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 84/180 (46%), Gaps = 43/180 (23%)
Query: 513 FNKIRSVSKCAARMGQLFSSSKQTLV-----VPVQDVEMIPDVEVTSDGNTYCFSDGIGK 567
F ++ S S+ A + SS+ + L+ + ++ V+ IPDVE N FSDG+G
Sbjct: 357 FLRVESRSQSAV----ILSSAIRILLLEHNPIDLRHVQEIPDVE----RNGRTFSDGVGT 408
Query: 568 ISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVD-RNSFRKLSLRRSMLKFE-SRNRM 625
+ KG+I++D R L +R SM+KF S++
Sbjct: 409 SA---------------------------KGMISLDSRLKGNVLVVRDSMIKFRGSKSAD 441
Query: 626 LNVTKWS-ESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQK 684
L + + + +P +LNR++I +L +GV+D+ F +Q +++ L N +A L K
Sbjct: 442 LEICEAAYRPLPMYLNRQLIKILEDMGVEDDYFLNLQAREVESLRAAADNPMSASKFLTK 501
>gi|297832164|ref|XP_002883964.1| hypothetical protein ARALYDRAFT_319567 [Arabidopsis lyrata subsp.
lyrata]
gi|297329804|gb|EFH60223.1| hypothetical protein ARALYDRAFT_319567 [Arabidopsis lyrata subsp.
lyrata]
Length = 893
Score = 101 bits (251), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 154/617 (24%), Positives = 246/617 (39%), Gaps = 148/617 (23%)
Query: 454 YRTKIYSRILTILQDGIVIGDKHYEFLAFS----ASQLRNNSVWMF----------ASND 499
Y YS+ I ++GI++G + Y+ F A + + NS AS+D
Sbjct: 258 YCNDPYSKHKEIAKNGIMVGLRRYQIFVFKDGGKAEKKKRNSTKQVKCYFIRMDSTASSD 317
Query: 500 --------EVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLV-VPVQDVEMIPDV 550
+S + R + + S + AR + S +K+ V + V+ I D+
Sbjct: 318 MENPYILAGMSIHEARMHFMHVHTLPSPANYMARFSLILSKTKKLEVDMTGITVKQIDDI 377
Query: 551 E---------VTSDGNTYCFSDGIGKISLSFARQV----------------AQKCGLSHT 585
+ +G SDG G IS AR + CG
Sbjct: 378 HCHDQSNNDVLDKNGKPRIHSDGTGYISEDLARMCPVNIFKGKNIKSDIIQGKTCG-QEP 436
Query: 586 PSAFQIRY----GGYKGVIAVDRN-SFRKLSLRRSMLK---------FESRNRMLNVTKW 631
P QIR KG+ +++N R + +R SM+K F + N + VT
Sbjct: 437 PLLIQIRMFNDGSAVKGIFLLNKNLPPRTVQVRPSMIKVYKDKNLSNFSTFNSLEVVTTS 496
Query: 632 SESMPCFLNREIISLLSTLGVKDEVF-----EAMQQQQLILL-------GKMLINREAAL 679
+ L++ +++LLS GV ++ F ++++ + G M + A
Sbjct: 497 NPPKRAKLSKNLVALLSYGGVPNDFFLDILLNTLEKKNTVFFKIRAAGKGSMRSHMMALF 556
Query: 680 DVL------QKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYV 733
L L +D KN L +M++ G P EPYL L + + DLK+ R+ +
Sbjct: 557 LSLFVFCSCTSLRNMDDKNAL-QMIMAGI-PLDEPYLKHHLSLLLKIKKDDLKA-GRLPI 613
Query: 734 PKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNP 793
+ L+G D TG L + +V V NP
Sbjct: 614 DESYYLMGTVDPTGELK---------------------------------EDEVCVILNP 640
Query: 794 CLHPGDVRVLEAVYEMKLEEKDYVD----CIIFPQKGERPHPNECSGGDLDGDIFFISWD 849
LH GD+ +L+A Y LE+ YV + FPQKG R +E +GGD DGD++FIS +
Sbjct: 641 GLHFGDIHILQATYVKTLEQ--YVGNSKYAVFFPQKGPRSLGDEIAGGDFDGDMYFISRN 698
Query: 850 NDLI----PCE----TEPPMD-YTGRRSRIMDHDVTLEEIHKFFVD--YMINDTLGAIST 898
L+ P E + PP YTGR+ + + EE+ F+ + ++ +G +
Sbjct: 699 PKLLEHYKPSEPWVSSSPPSKIYTGRKPSELSPEQLEEELFNMFLKTGFSPSNVIGQAAD 758
Query: 899 AHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPR 958
+ L DR L A+D KTG +P +K FP +MER +
Sbjct: 759 SWLGIMDR-----------FLTLGDENAIDAPKTGTEVNLPFDVKADVFPHYMERNKIFK 807
Query: 959 YISFGVLGKLYRATLDS 975
IS +LG ++ T+DS
Sbjct: 808 SIS--ILGLIF-DTVDS 821
>gi|443894414|dbj|GAC71762.1| RNA-directed RNA polymerase QDE-1 [Pseudozyma antarctica T-34]
Length = 1339
Score = 101 bits (251), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 98/375 (26%), Positives = 153/375 (40%), Gaps = 87/375 (23%)
Query: 556 GNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSF-------- 607
G +DG +SL+ AR VAQ+ L+ PSA Q R G KGV +D N+
Sbjct: 551 GEQVIMTDGAATMSLAVARDVAQRLSLTSVPSAIQARVAGAKGVWYLDPNAQSWLPGEEP 610
Query: 608 -RKLSLRRSMLKFE---------SRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVF 657
R + +R+S K E S+ + +T + P L+++II +L + GV E F
Sbjct: 611 KRWIHIRKSQNKIEYPRDEPRDLSQQVLDLLTASRTTSPSSLSKQIILVLHSNGVPTETF 670
Query: 658 EAMQQQQL--------------ILLGKMLI----------------NREAALDVLQKLNG 687
A+QQ +L +L+ K L + EAA Q +
Sbjct: 671 AALQQAELRAITDSISNWEGPDLLVSKALAKVVDDLCQVEKLRAKRSTEAAEHRAQGMGL 730
Query: 688 VDSKNI----------------------LVK------MLLQGYEPNVEPYLSMMLLSHHE 719
DS + L K ML G+ P YL+ L+ +
Sbjct: 731 SDSTQMDTVGDDRDFFFEKGRHIWNGMPLSKPERAHDMLKIGFHPRSCSYLAGFLVEIAD 790
Query: 720 NQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSF-FHRVDD 778
+ + R + + + + D TG L G++ R + + + D H V +
Sbjct: 791 TAMKKVTQRFAVSIARSAEAMVIPDPTGTLEEGEIQFR--FSGDSICDPDSRLALHHVPE 848
Query: 779 KTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGD 838
G VLVT++PCL P D+R + AV +L + D ++F KG P + SGGD
Sbjct: 849 ------GDVLVTRHPCLLPTDIRKVRAVVRSELSR--FQDVVVFSTKGHTPLASLLSGGD 900
Query: 839 LDGDIFFISWDNDLI 853
DGD+ + W+ L+
Sbjct: 901 YDGDLIRVFWEPRLV 915
>gi|401885543|gb|EJT49653.1| hypothetical protein A1Q1_01210 [Trichosporon asahii var. asahii
CBS 2479]
Length = 957
Score = 100 bits (249), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 115/471 (24%), Positives = 205/471 (43%), Gaps = 84/471 (17%)
Query: 405 ELETSNYVVKNFAKYASDFMRVTFV-EEDWSKLPANALSTSIQRGIFSKPYRTKIYSRIL 463
E+ETS ++N ++ F+RV F+ EED ++ L +P + +R+
Sbjct: 313 EVETSTDAIRNHLSFSDRFLRVEFIDEEDGFQVNPTVLEADQM-----EPAEGTV-ARVR 366
Query: 464 TILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASN--DEVSAEDVRGWMGCFNKIRSVSK 521
+ +G+ I +HY FLA+ A+ R S W A + ++ E V+ +G + +R +
Sbjct: 367 RAMMNGLNIAGRHYVFLAYGATSARQQSCWFLAEDPAKNLTVESVKRNLG-LDLLRDTT- 424
Query: 522 CAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCG 581
AR SK +++P D+ + YC SD G+ +S V K
Sbjct: 425 -VARF-----VSKMAIILP--DI-----LHADQQEKGYCESDA-GRTEIS---AVEDKES 467
Query: 582 LSHTPSAFQIRYGGYKGVIAVDRNSFRKLSLRRSMLKFESRNRM----LNVTKWSESMPC 637
+ N ++ R+S +K+ + ++ LN+ ++ +
Sbjct: 468 ME---------------------NVSEEVYFRQSQVKYRTGSKTMAYGLNIVEFKRA--- 503
Query: 638 FLNREIISLLSTLGVKDEVFEAMQQQQLILL---GKMLINREAALDVLQK-LNGVDSKNI 693
L+R+ + +++ LGV D VFE++ IL + L+ R A +L++ L+ V
Sbjct: 504 HLSRQAVVIMNHLGVPDAVFESL----FILAMREARGLLKRSATAGLLKEGLSLVSQHTH 559
Query: 694 LVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQ 753
L + +P L + + LSD + R+ V + L+G DE +L+ +
Sbjct: 560 FPVSELYSFGFKTDPMLLDICRATAVRLLSDYRHNARLQVDQSVKLMGIADELNVLSEHE 619
Query: 754 VFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEE 813
VF + + D S D ++V G + ++P LHPGD++++ AV +L
Sbjct: 620 VFC-------QYDDPDSS------DGPNVVLGACAIMRDPVLHPGDIQLVHAVDRPELHH 666
Query: 814 KDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYT 864
V I+F +G+ S G+L GD + + WD LIP E P YT
Sbjct: 667 LRNV--IVFSVQGQ-----PLSRGNLAGDQYSLIWDPVLIPPEQVEPSSYT 710
>gi|268565349|ref|XP_002639417.1| Hypothetical protein CBG04006 [Caenorhabditis briggsae]
Length = 797
Score = 100 bits (248), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 114/404 (28%), Positives = 170/404 (42%), Gaps = 81/404 (20%)
Query: 788 LVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFIS 847
+VTK P + GD+R+ EAV +L D I+FPQ G R P+E +G DLDGD + +
Sbjct: 1 MVTKFPTMCAGDIRMYEAVDIPELHH--LTDVIVFPQSGPRSQPDEMAGSDLDGDEYAVI 58
Query: 848 WDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEI-HK---FFVDYMINDTLGAISTAHLVH 903
WD L + P Y + + TL E+ HK FF M + +G + HL
Sbjct: 59 WDPILFFQKNAPAFGYCSEKK---NKQFTLGEMDHKMNDFFALSMRQEDVGVTAINHLHQ 115
Query: 904 ADR---DPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLAL-----------------K 943
+D+ D D A S L ++MA+DFAK+G P PL L +
Sbjct: 116 SDQFGIDSDVANS-----LVEKNAMALDFAKSGDP---PLPLTNEGRINPETGLWEPPER 167
Query: 944 PKEFPDFMERE--DKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVD 1001
+ PDF + Y S +LG L+R L SI + ++ SEK D L +
Sbjct: 168 SERRPDFSQSRHAGSASYASSRLLGTLHRE-LRSINDVVMSS--SEKQVPVVIDDLLIWE 224
Query: 1002 GFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTG---NLRNRASYLQRDNRRY--- 1055
G+E A Y ++ ++M +G +TE E+ +G ++RNR S ++D+
Sbjct: 225 GWEKHKDNATLQMIRYNGQLRSIMETFGVATEAEVFSGCFRDIRNRQSEREQDDMSMYNT 284
Query: 1056 -----GDMKDRI-----------------------LLSAKNLQNEAKE--WFGSSCKENE 1085
G M D L +N++ +E CK+
Sbjct: 285 ESVIEGQMTDLYKKYRKEFFEEFVTPEARMPAYMRLTEPENVRRNYEEVDVLRRVCKQPS 344
Query: 1086 HPQLAS--AWYHVTYSPSYCKERMALLSFPWIVGDILLNIKSVN 1127
+A A+Y V Y + K LSF WI DIL ++ N
Sbjct: 345 DAMMAKAIAYYRVCYENA-MKGSDRKLSFAWIAYDILNFVRGKN 387
>gi|218187687|gb|EEC70114.1| hypothetical protein OsI_00773 [Oryza sativa Indica Group]
Length = 1172
Score = 100 bits (248), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 153/584 (26%), Positives = 236/584 (40%), Gaps = 115/584 (19%)
Query: 487 LRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQ--LFSSSKQTLVVPVQDV 544
+R S W +S + F IR+V A M + L S TL V + +V
Sbjct: 472 VRTESGWNMDEPYILSGRTIGQARDLFMHIRTVLTLAKYMLRFALIVSKTITLDVDLSEV 531
Query: 545 --EMIPD--------VEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHT--------P 586
++I D EV DG +DG G IS +AQKC S++ P
Sbjct: 532 LVKLIDDEPCLDEHGKEVFRDGERLIHTDGTGLIS----EDLAQKCTYSNSKGKLLEPQP 587
Query: 587 SAFQIR--YGG--YKGVIAVD-RNSFRKLSLRRSMLKF---------------------- 619
Q+R Y G KG + VD R R + +R SMLK
Sbjct: 588 LLIQLRLFYNGSAVKGTVLVDKRLPPRTIHIRPSMLKIKTYPELSGVQSVNSLDIVSARN 647
Query: 620 --------ESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKM 671
+S N V+ + S F + +I+LL GV +E F + Q +
Sbjct: 648 AKKSLSGVQSVNSFEIVSTSNRSGRTFTSNNLIALLHYGGVPEEFFMELLQTAIEEADNA 707
Query: 672 LINREAALDVLQKLNGVDSKNIL-VKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRC- 729
+ AL++ N D ++ + +M+L G P E YL L + LS L+ +
Sbjct: 708 RFDYAGALNI--AFNYADMEDSMPARMILSGI-PLEESYLQSRL-----DFLSLLERKGI 759
Query: 730 ---RIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGK 786
+I + L+G D TG L +V V + + V G
Sbjct: 760 KNGKIPIDDCYYLMGTADPTGKLGPNEVCVILDYGQ--------------------VSGD 799
Query: 787 VLVTKNPCLHPGDVRVLEAVYEMKLEE--KDYVDCIIFPQKGERPHPNECSGGDLDGDIF 844
VLV K P LHPGD+ VL+A Y + + + I+FP G+R +E + D DGDI+
Sbjct: 800 VLVYKYPGLHPGDIHVLKATYSSDIGKVVGNSKHAILFPTTGQRSLADEMANSDFDGDIY 859
Query: 845 FISWDNDLI----PCET-EPPMDYTGRRSRIMD--HDVTLEEI--HKFF-VDYMINDTLG 894
++S + L+ P + P + G + + + ++ LE + H+F + +
Sbjct: 860 WVSLNPKLLEHFKPSKPWVPAITPNGTKQKGPEDFNESELERVLFHEFLKTRFAPSYARA 919
Query: 895 AISTAHLVHADR--------DPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKE 946
+T LV+ DR K K L L L+ +A+D K G +P L K+
Sbjct: 920 TAATNWLVYMDRLLTVSLDESEKKLIEKKMLKLVDLYYLALDAPKMGNKVNIPRDLMVKQ 979
Query: 947 FPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIA 990
+P FM+R P Y S +LGK+Y D +RS+ + I+
Sbjct: 980 YPHFMDR--SPSYHSSSILGKIYDKAGDP-KPLRSDNVQPTSIS 1020
>gi|156390354|ref|XP_001635236.1| predicted protein [Nematostella vectensis]
gi|156222327|gb|EDO43173.1| predicted protein [Nematostella vectensis]
Length = 127
Score = 99.4 bits (246), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 72/124 (58%), Gaps = 15/124 (12%)
Query: 727 SRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGK 786
S+ RI VP R++ G D G L YGQ T+ E ++ Q V +
Sbjct: 18 SKLRILVPNSRVVFGVCDPFGELEYGQCVFHPTLYDEVRIAEYQ------------VATE 65
Query: 787 VLVTKNPCLHPGDVRVLEAVYEMKLEEKDYV-DCIIFPQKGERPHPNECSGGDLDGDIFF 845
V+V +NPC +PGD+RVL+ V L + Y+ DCI+FP KG RPH +E SGGDLDGD FF
Sbjct: 66 VMVVRNPCYYPGDIRVLKLV--KNLPQYAYLNDCIVFPTKGSRPHADESSGGDLDGDEFF 123
Query: 846 ISWD 849
+SWD
Sbjct: 124 VSWD 127
>gi|402579794|gb|EJW73745.1| hypothetical protein WUBG_15348 [Wuchereria bancrofti]
Length = 203
Score = 99.0 bits (245), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/175 (37%), Positives = 95/175 (54%), Gaps = 13/175 (7%)
Query: 664 QLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLS 723
L L ML+N + + L +L N+ L +G+ EP+ +L +H + L
Sbjct: 31 HLTQLADMLMNEDKCRERLNELPL--RVNVSRLTLARGFALTQEPFFRSLLRAHIKCTLK 88
Query: 724 DLKSRCRIYVPK--GRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTS 781
L ++ +I +P GR + G DETG L +GQ+FV+ T L++ QS
Sbjct: 89 KLIAKIQIQIPPHLGRSMFGVMDETGQLQWGQIFVQCT-RNIWLKTPSQS------AAKI 141
Query: 782 IVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSG 836
I+KGKV++TKNPC+ GDVRV EAV +L VD ++FPQ G RPHP+E +G
Sbjct: 142 ILKGKVMLTKNPCIVAGDVRVFEAVDIPELHH--LVDVVVFPQHGPRPHPDEMAG 194
>gi|224093866|ref|XP_002310026.1| hypothetical protein POPTRDRAFT_562705 [Populus trichocarpa]
gi|222852929|gb|EEE90476.1| hypothetical protein POPTRDRAFT_562705 [Populus trichocarpa]
Length = 406
Score = 99.0 bits (245), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 87/267 (32%), Positives = 127/267 (47%), Gaps = 39/267 (14%)
Query: 597 KGVIAVDRN-SFRKLSLRRSMLKFE---------SRNRMLNVTKWSESMPCFLNREIISL 646
KG V++ + R L +R SM+K E S+N + V FL++ +I+L
Sbjct: 154 KGTFLVNKKLNHRTLHVRPSMIKVETDPKLSNTFSKNSLEIVGTSCRPKKTFLSKNLIAL 213
Query: 647 LSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNV 706
LS GV +E F + L +L N++AAL V +D NI+ M+ G P
Sbjct: 214 LSYGGVPEEFFMGILNNALEDAHGILSNKKAALRVALNYGDMDD-NIVATMIGCGI-PLE 271
Query: 707 EPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELE 766
EPYL L S + + +I VP+ L+G D TG+L +V + + +
Sbjct: 272 EPYLQHHL-SILKKEEKKSLKGGKIPVPESYYLMGTADPTGLLESDEVCIILDCGQ---- 326
Query: 767 SKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVD----CIIF 822
V G+VLV +NP LH GD+ +L+A Y +LE D+V I F
Sbjct: 327 ----------------VSGEVLVYRNPGLHFGDIHILKATYVRELE--DFVGNAKYAIFF 368
Query: 823 PQKGERPHPNECSGGDLDGDIFFISWD 849
P KG R +E SGGD DGD+FF+S +
Sbjct: 369 PCKGPRSLADEMSGGDFDGDMFFVSRN 395
>gi|242216941|ref|XP_002474274.1| predicted protein [Postia placenta Mad-698-R]
gi|220726566|gb|EED80511.1| predicted protein [Postia placenta Mad-698-R]
Length = 998
Score = 98.6 bits (244), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 85/319 (26%), Positives = 141/319 (44%), Gaps = 57/319 (17%)
Query: 466 LQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSV---SKC 522
++DG+++ D+HY FL F+ ++ + F + S ++G + S K
Sbjct: 71 MRDGLLLRDEHYTFLGFTDGHVKEGKLVFFREDASWSVARFMDYIGNLRDVYSAYGYGKY 130
Query: 523 AARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGL 582
AAR+ FSS+ ++L VP IPD DG+ + SDG G I SFA V + G+
Sbjct: 131 AARLALSFSSTVESLDVPFVKAARIPDRRA-RDGSLH--SDGCGLIRHSFAMDVCRNNGI 187
Query: 583 SHTPSAFQIRYGGYKG-VIAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNR 641
+ FQIR GG KG ++ N F K++LR
Sbjct: 188 APDTCVFQIRRGGIKGLLVRYPDNQFDKVTLR---------------------------- 219
Query: 642 EIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNI------LV 695
+ ++ +FE M Q QL L+G +L NR+ A ++ +D+ N L
Sbjct: 220 --------MAIRRAIFEKMLQDQLDLIGCILHNRDQAEKYIK--GELDASNTTAFNQDLY 269
Query: 696 KMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVF 755
+LL ++ N EPY+ L + Q + L + + V + G DE+G+L +VF
Sbjct: 270 AILLAKHDLN-EPYVEWKLRQFQQQQCNLLHKKLNLRVEDSCYVFGVIDESGVLEEDEVF 328
Query: 756 VRV-----TMTREELESKD 769
+ + +TR+ + +D
Sbjct: 329 LNLPGRTGVLTRDVIVGRD 347
Score = 44.3 bits (103), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
Query: 836 GGDLDGDIFFISWDNDLIPCETEPPMDYTG------RRSRIMDHDVTLEEIHKFFVDYMI 889
G DLDGD +F++W+ LIP + P G + R + D + F+ +
Sbjct: 345 GRDLDGDEYFVTWEPGLIPRDMPEPQHRAGTPTANTKPPRRLTEDAMNDAALDTFIRHKY 404
Query: 890 NDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGA-PAEM 938
N TL + L AD P A LA + A+D K+GA PA++
Sbjct: 405 NKTLRFAAKKWLDVADATPHLANYPYAQELAPIIESALDCIKSGADPADI 454
>gi|299740358|ref|XP_001838853.2| RNA-directed RNA polymerase [Coprinopsis cinerea okayama7#130]
gi|298404206|gb|EAU82968.2| RNA-directed RNA polymerase [Coprinopsis cinerea okayama7#130]
Length = 1548
Score = 98.6 bits (244), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 124/240 (51%), Gaps = 26/240 (10%)
Query: 465 ILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAA 524
+ + G+ + Y F S SQLR S ++ +N + +D +G F++I +++K A
Sbjct: 41 MFKAGVFLNGVQYRFYHHSNSQLRGRSCFLREANSDKELDDRIYALGDFSRINNIAKRAK 100
Query: 525 RMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKC---- 580
R+G LFSS++ + VE I D+E+ + FSDG G IS S +Q+A+
Sbjct: 101 RIGLLFSSAEVDFNLDPTFVEDIGDIEIGGE----VFSDGCGLISKSLTKQIAKAKKLMF 156
Query: 581 -GLSHTPSAFQIRYGGYKGVIAV-----DRNSFRK-------LSLRRSMLKFE-SRNRML 626
G+ +TP QIRY GYKGV+ + +RN R+ R+SM KF+ + +
Sbjct: 157 RGIRYTPVVIQIRYEGYKGVLMLHPDLDERNRQREPGTPPCYAQFRKSMKKFKATSDHSF 216
Query: 627 NVTKWSESMP-CFLNREIISLLSTLGVKDEVFEAMQQQQ---LILLGKMLINREAALDVL 682
+V +S+ LN +II+L+ +LGV E A QQ+ + + ++ + AALD L
Sbjct: 217 SVVGYSKPYSFGRLNNDIITLIHSLGVTKEKLVAKQQEYFDWIASITQLDTDPTAALDFL 276
Score = 74.7 bits (182), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 64/131 (48%), Gaps = 10/131 (7%)
Query: 817 VDCIIFP----QKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMD 872
VDC++F + G +P P+ SGGDLDGD FF+ WD DL+P P DY +
Sbjct: 321 VDCLVFASAVRRPGSKPAPSLSSGGDLDGDEFFVCWDQDLVPPRVSEPYDYPPNKEP-RP 379
Query: 873 HDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKT 932
VT ++ F Y + + +S H A P A +C L LHS +VD
Sbjct: 380 KAVTRADLANHFASYT-SSGVAKVSALHNKWAISSPLGALCVECQELNALHSQSVD---- 434
Query: 933 GAPAEMPLALK 943
GAP ++P L+
Sbjct: 435 GAPIKIPERLQ 445
>gi|452002294|gb|EMD94752.1| hypothetical protein COCHEDRAFT_1201293 [Cochliobolus heterostrophus
C5]
Length = 1666
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 121/506 (23%), Positives = 205/506 (40%), Gaps = 110/506 (21%)
Query: 513 FNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSD--------- 563
NK +S K AR+ S + TL + + + D D F+D
Sbjct: 921 LNKEQSFCKAFARIDLGLSRTIPTLCFDAEQIRRVRDSRSKGDQEDTRFNDTTLDWPPFP 980
Query: 564 -------GIGKISLSFARQV----AQKCGLSHT-PSAFQIRYGGYKGVIAVDRNSFRK-- 609
G +S+ A+++ + G++ PSAFQ R GG KG+ ++ F K
Sbjct: 981 ARTVMDDGCCVMSVGAAKKIWDLYTKATGVTDPLPSAFQGRIGGAKGIWVINAERFTKEP 1040
Query: 610 ------LSLRRSMLKFESRN------RMLNVTKWSES-MPCFLNREIISLLSTLGVKDE- 655
+ + S KFE N R V +S + P L+ I +L+ GV E
Sbjct: 1041 THLEPWIMINDSQWKFEPPNDQSPYHRTFEVLNYSSTPSPSELHSLFIPILADRGVPKEA 1100
Query: 656 ----VFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSK----------------NILV 695
+F++++++++ LL + + V + NG ++K ++
Sbjct: 1101 ISDLMFDSLEKERMNLLNVLQDTTKVHEWVYR--NGANTKLREETPGRAGQPASLEEKVL 1158
Query: 696 KMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQV- 754
+L G++P PYL+ L S ++ +++ R+ +PK L G D G+LN G++
Sbjct: 1159 NLLESGFDPLKFPYLAQNLESFILSRQIFQEAKLRVLLPKSTFLYGVADPKGVLNPGEIQ 1218
Query: 755 ------FVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYE 808
F+ T LE +D + VLV ++P D++ + V
Sbjct: 1219 VLFSWPFLDETTNERYLELRDLN---------------VLVARHPACRRSDIQKVRTVIH 1263
Query: 809 MKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI------PCETEPP-- 860
+L VD +F KG P + GGD DGDIF+I W+N L+ P +PP
Sbjct: 1264 PELSH--LVDVAVFSSKGSFPLAGKLQGGDYDGDIFWICWENTLVQPFFNAPAPVQPPEP 1321
Query: 861 -MDYTGRRSRIMDHDVTLEEIHKFFVD------YMINDTLGAISTAHLVHADRDPDKARS 913
+ +R+ + H V ++ K VD + D + A ++ +A S
Sbjct: 1322 SLYGIEKRTEKLKHIVDVKRPDK--VDAFLKRAFEFRDHSSLLGQATILAE----SQAYS 1375
Query: 914 SKCLHLATL------HSMAVDFAKTG 933
C+H TL H + VD +K G
Sbjct: 1376 ENCVHSGTLEKLYDVHDLLVDASKQG 1401
>gi|452845289|gb|EME47222.1| hypothetical protein DOTSEDRAFT_69242 [Dothistroma septosporum
NZE10]
Length = 816
Score = 97.8 bits (242), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 110/445 (24%), Positives = 179/445 (40%), Gaps = 93/445 (20%)
Query: 561 FSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGV--IAVDRNSFR--------KL 610
SDG +IS Q+AQ GL PS Q R G KG+ ++ D+++ R +
Sbjct: 137 MSDGCSEISAWAMAQIAQMLGLPEVPSVIQGRIFGAKGIWYVSADQDTARSTEKPPGKNI 196
Query: 611 SLRRSMLK----------FESRNRMLNVTKWSES----------MPCFLNR--------- 641
+ S +K F +NV K S MP +R
Sbjct: 197 KIANSQIKVRYPLHEVRHFGKELLTMNVVKASGPCKPSILHIGFMPLLEDRKVPELAIRG 256
Query: 642 --------EIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNI 693
E+ LL++L ++ E M QQ + NRE + + I
Sbjct: 257 FIGPRVQAEMNDLLTSLETPVQLREWMAQQNEYY---EICNRENGITTAGGFPWSKGEQI 313
Query: 694 LVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQ 753
++ML G+ P + YL+ +++ N L+ + +I+VP+ +IG D G L G+
Sbjct: 314 -IQMLESGFFPQEDAYLAELVVEMVGNYLTLKRKNFKIHVPRSTTVIGISDPLGCLQPGE 372
Query: 754 VFVRV-TMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLE 812
+ + T R+ H ++ VL T+NP + D++ L AVY+ +L
Sbjct: 373 IHIGFSTPFRDHKAGASWMHLHGMN---------VLSTRNPSMAGSDMQKLRAVYKPELA 423
Query: 813 EKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI--------PCETEPPMDYT 864
D ++FP +G RP + GGD DGD F++ W+ L+ P ET+ P T
Sbjct: 424 H--LRDVVVFPSQGMRPLAGKLQGGDYDGDTFWLCWEPSLVDPFLNAPAPWETDVP---T 478
Query: 865 GRRSRIMDHDVTLEE------IHKFFVDYMI--------NDTLGAIST--AHLVHADRDP 908
+ I+ TL + D+++ ++ LG ++ +V+ D D
Sbjct: 479 PEQLGIIKDSTTLADTVGSCPTDSALADWLVACAATRMSHNLLGTVTLEWEKMVYHDNDI 538
Query: 909 DKARSSKCLHLATLHSMAVDFAKTG 933
D RS + LH VD K G
Sbjct: 539 DTKRSRTMI---ALHDYLVDADKQG 560
>gi|322695803|gb|EFY87605.1| Rnai Polymerase [Metarhizium acridum CQMa 102]
Length = 685
Score = 97.1 bits (240), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 88/344 (25%), Positives = 151/344 (43%), Gaps = 55/344 (15%)
Query: 561 FSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSFRK----LSLRRSM 616
+DGIG+IS + A ++A K GL+ P AFQ R GG KG+ +D + + S
Sbjct: 1 MNDGIGRISKALAMKIASKLGLTELPCAFQARLGGAKGMWIIDSDPILGDGDWIVTYASQ 60
Query: 617 LKF-----ESRNRMLNVTKWS-ESMPCFLNREIISLLSTLGV-----KDEVFEAMQQQQL 665
+K+ +S +R V +WS E P LN++ I +L + +D + +++
Sbjct: 61 IKWDCDHEDSHHRTFEVKEWSKEPRPASLNQQFIPVLEARAINPYKMRDTISAHLRRG-- 118
Query: 666 ILLGKMLINREAALDV------LQKLNGV-----------------DSKNILVKMLLQGY 702
LL ++ R A D LQ+ G D K ++ +L G+
Sbjct: 119 -LLEELAAQRTAMEDSAELRLWLQQGGGSKPEGLDNSMAFLGCLPRDPKKVMAVLLDSGF 177
Query: 703 EPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTR 762
P YL + ++ + LK++ +I VP L+ D + L +V V + T+
Sbjct: 178 HPKSCKYLQDLFRDAARDRAAFLKAKMKICVPCSAYLLMVVDFSSTLEEDEVHVSFS-TK 236
Query: 763 EELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIF 822
+++ + +D VLV + P P D++ ++ V +L + D I+F
Sbjct: 237 FQVDGFCDTLLEGMD---------VLVARAPSHLPSDIQRVKVVSRPQL--RHLKDVIVF 285
Query: 823 PQKGERPHPNECSGGDLDGDIFFISWDNDLIP--CETEPPMDYT 864
KG ++ SGGD DGD ++ WD +++ C P D T
Sbjct: 286 STKGRSSLADKLSGGDYDGDRAWVCWDQEIVENFCNAAMPGDDT 329
>gi|115435092|ref|NP_001042304.1| Os01g0198000 [Oryza sativa Japonica Group]
gi|56201772|dbj|BAD73222.1| RNA-dependent RNA polymerase -like [Oryza sativa Japonica Group]
gi|56201879|dbj|BAD73329.1| RNA-dependent RNA polymerase -like [Oryza sativa Japonica Group]
gi|113531835|dbj|BAF04218.1| Os01g0198000 [Oryza sativa Japonica Group]
gi|215693837|dbj|BAG89036.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 582
Score = 96.7 bits (239), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 118/434 (27%), Positives = 190/434 (43%), Gaps = 62/434 (14%)
Query: 586 PSAFQIR-YGGYKGVIAVDRNSFRKLSLR---RSMLKFESRNRMLNVTKWSESMPCFLNR 641
PS +I+ Y GV +V NS +S R +S+ +S N V+ + S F +
Sbjct: 43 PSMLKIKTYPELSGVQSV--NSLDIVSARNAKKSLSGVQSVNSFEIVSTSNRSGRTFTSN 100
Query: 642 EIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNIL-VKMLLQ 700
+I+LL GV +E F + Q + + AL++ N D ++ + +M+L
Sbjct: 101 NLIALLHYGGVPEEFFMELLQTAIEEADNARFDYAGALNI--AFNYADMEDSMPARMILS 158
Query: 701 GYEPNVEPYLSMMLLSHHENQLSDLKSRC----RIYVPKGRLLIGCFDETGILNYGQVFV 756
G P E YL L + LS L+ + +I + L+G D TG L +V V
Sbjct: 159 GI-PLEESYLQSRL-----DFLSLLERKGIKNGKIPIDDCYYLMGTADPTGKLGPNEVCV 212
Query: 757 RVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEE--K 814
+ + V G VLV K P LHPGD+ VL+A Y +E+
Sbjct: 213 ILDYGQ--------------------VSGDVLVYKYPGLHPGDIHVLKATYSSDIEKVVG 252
Query: 815 DYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI----PCET-EPPMDYTGRRSR 869
+ I+FP G+R +E + D DGDI+++S + L+ P + P + G + +
Sbjct: 253 NSKHAILFPTTGQRSLADEMANSDFDGDIYWVSLNPKLLEHFKPSKPWVPAITPNGTKQK 312
Query: 870 IMD--HDVTLEEI--HKFF-VDYMINDTLGAISTAHLVHADR--------DPDKARSSKC 916
+ ++ LE + H+F + + +T LV+ DR K K
Sbjct: 313 GPEDFNESELERVLFHEFLKTRFAPSYARATAATNWLVYMDRLLTVSLDESEKKLIEKKM 372
Query: 917 LHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSI 976
L L L+ +A+D K G +P L K++P FM+R P Y S +LGK+Y D
Sbjct: 373 LKLVDLYYLALDAPKMGNKVNIPRDLMVKQYPHFMDRS--PSYHSSSILGKIYDKAGDP- 429
Query: 977 MQIRSNAIWSEKIA 990
+RS+ + I+
Sbjct: 430 KPLRSDNVQPTSIS 443
>gi|242790556|ref|XP_002481575.1| RNA-directed RNA polymerase, putative [Talaromyces stipitatus ATCC
10500]
gi|218718163|gb|EED17583.1| RNA-directed RNA polymerase, putative [Talaromyces stipitatus ATCC
10500]
Length = 1360
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 124/491 (25%), Positives = 208/491 (42%), Gaps = 71/491 (14%)
Query: 497 SNDEVSAEDVRGWMGCFNKIRSVSKCA--ARMGQLFSSSKQTLVVPVQDVEMIPDVEVTS 554
S+ ++ + + W N+ RS + C +R+ S + T+VV +PD
Sbjct: 610 SHTRMTVDQLIQWHTPLNENRSQTDCKLFSRLSLALSKTWATVVVRPHQFLKLPDAP--- 666
Query: 555 DGNTYCFSDGIGKISLSFARQVAQKCGLSH-TPSAFQIRYGGYKGVIAVDRNSFRK---- 609
+ +DG +S S AR + K G+ TPSAFQ R G KG+ VDR+
Sbjct: 667 --DKPVMNDGCALMSRSLARDICTKLGIDGVTPSAFQGRIAGAKGLWMVDRDRGEDERFW 724
Query: 610 LSLRRSMLKFESRNR-----------MLNVTKWSESM-PCFLNREIISLLSTLG-VKDEV 656
+ + S LK + R V WS+ + +N +++ +L+ G V++ V
Sbjct: 725 IQVSDSQLKVKPHPRDFFGHVDKEKITFEVVGWSKPLRSSEINTQLLEVLNNRGQVRNRV 784
Query: 657 --------------FEAMQQQQLILLGKMLIN--REAALDVLQKLN--GVD---SKNI-- 693
FE + ++ I L + LI R D + N +D S NI
Sbjct: 785 ADIARDAIRSIYSEFEIVMEKNSIPLARALIQKIRPNTEDGHSRTNIRRIDQWLSNNIES 844
Query: 694 LVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQ 753
+++ L G+ P L L + L ++ I +P D G+L +
Sbjct: 845 IIRFLEAGFSPRDFHPLRERLRICLRDTLDRYVTQLHIPIPLSTYAYCIADPYGVLEENE 904
Query: 754 VFVRVTMTREELESKDQSFFHRVDDKTSIVKG-KVLVTKNPCLHPGDVRVLEAVYEMKLE 812
V + + +D ++F DD ++V G VLV + P P D++ AV++ +L
Sbjct: 905 VHFAFSG-----QWRDCAYF---DD--AMVDGVDVLVGRTPAHCPWDIQRRRAVWKSEL- 953
Query: 813 EKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI-------PCETEPPMDYTG 865
+ + D I+F KG P + SGGD DGD ++ WD+ ++ P EP ++ G
Sbjct: 954 -RHFKDVIVFSTKGTTPLASLLSGGDYDGDRTWVCWDSGIVESFTNTTPPAIEPGPEHFG 1012
Query: 866 --RRSRIMDHDVTLEE-IHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATL 922
+ +R M+ ++E+ + F + LG + H A + + S L LATL
Sbjct: 1013 LVKHARPMETVSSVEDMLQNTFKFNLATTNLGQCTVEHNKLAYDEKEGISSPLSLELATL 1072
Query: 923 HSMAVDFAKTG 933
S VD K+G
Sbjct: 1073 LSHLVDSTKSG 1083
>gi|119370386|gb|ABL68090.1| putative RNA-directed RNA polymerase 3 [Nicotiana attenuata]
Length = 110
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 73/111 (65%), Gaps = 1/111 (0%)
Query: 639 LNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKML 698
LNR+I++LLS+L VKD +F MQ++ + L KML++ + A DV+ + ++ N ML
Sbjct: 1 LNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITA-SCAEAGNTAAIML 59
Query: 699 LQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGIL 749
G++P EP+L ML S +QL DL+++ RI+VP GR L+GC DE G L
Sbjct: 60 SAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGEL 110
>gi|290988738|ref|XP_002677050.1| predicted protein [Naegleria gruberi]
gi|284090655|gb|EFC44306.1| predicted protein [Naegleria gruberi]
Length = 553
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 117/429 (27%), Positives = 171/429 (39%), Gaps = 106/429 (24%)
Query: 460 SRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSV 519
S ++ G + + ++ + S+S L V+ D + D+ G +
Sbjct: 133 STVMQTTLKGFCLYGQMFKPIGASSSLLSERGVYFTCEEDPMKMMDIFGIYA-----SEI 187
Query: 520 SKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQK 579
AR F+S+K+T + V +I D+ + DG SDGIG IS SFA+ V
Sbjct: 188 ETKIARQCLNFTSTKET--IRVHKYIVIDDIN-SRDGKGIV-SDGIGMISYSFAKAVC-- 241
Query: 580 CGLS---------HTPSAFQIRYGGYKGVIAVDRNSF---RKLSLRRSMLKFESR---NR 624
C L H P AFQIR+ G+KG++ V + ++ LR SM KFE N+
Sbjct: 242 CSLRDQSIDGKYVHIPRAFQIRFLGFKGMLTVCPDKIMNGNQIILRESMKKFEGNPLFNK 301
Query: 625 MLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQK 684
+ V +ES +NR+II LLS+L VKDEVF Q+
Sbjct: 302 LEIVEGLNESDTANINRQIIILLSSLQVKDEVFLNAQK---------------------- 339
Query: 685 LNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFD 744
K L + N E + + ++ + K + + ++ + G D
Sbjct: 340 -----------KALARNKCRNDEEFRA---------RIKNAKEKTKFFMKDSVIAKGILD 379
Query: 745 ETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKG--KVLVTKNPCLHPGDVRV 802
ET L QV V R +V G KV+V +NP LHP DVR+
Sbjct: 380 ETKQLKDNQVIVITKNGR-------------------MVPGGKKVIVFRNPGLHPRDVRI 420
Query: 803 LEAV----YEMKL--EEKDYVDCIIFPQKGERPH--PNECSGGDL---------DGDIFF 845
E V Y K E D +I + H P E L DGD FF
Sbjct: 421 FETVSIPDYYQKWFGHEVDLKGSVIIFAADCQQHNIPGELGNFHLFSISNLQFKDGDRFF 480
Query: 846 ISWDNDLIP 854
SW+ ++IP
Sbjct: 481 TSWNTEIIP 489
>gi|242211203|ref|XP_002471441.1| predicted protein [Postia placenta Mad-698-R]
gi|220729496|gb|EED83369.1| predicted protein [Postia placenta Mad-698-R]
Length = 865
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 103/381 (27%), Positives = 152/381 (39%), Gaps = 68/381 (17%)
Query: 639 LNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKML 698
LN +II LL++LGV E A Q+ + + E A + L + D ++L
Sbjct: 52 LNNDIIVLLASLGVTPEALLAKQESYHQWIRAASSDWEVAFNFLCAVGQYDFAE---RLL 108
Query: 699 LQGYEPN-VEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVR 757
L G E V+ + +S + + K R R+ + K RLL G D G+L G+V
Sbjct: 109 LDGIEAQGVQTKIRACQMSELASFKKNEKFRSRMIILKSRLLFGVCDPYGVLREGEVH-- 166
Query: 758 VTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYV 817
L AV KL V
Sbjct: 167 ---------------------------------------------LWAVDHPKLAH--LV 179
Query: 818 DCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTL 877
DC++F KG+R P+ SGGDLDGD F + WD DL+P + Y + R+ VT
Sbjct: 180 DCVVFSSKGKRAAPSMSSGGDLDGDRFLVMWDPDLVPKKVAESYTYPAPKERVGTQ-VTR 238
Query: 878 EEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAE 937
++ K F Y L I+ H P A +C L LHS AVD GAP +
Sbjct: 239 ADLAKHFAAYNTM-ALAKITALHARWVRCSPKGAMGDECQELNALHSQAVD----GAPIK 293
Query: 938 MPLALKPKEFP------DFMEREDKPRYISFGVLGKLYRATL--DSIMQIRSNAIWSEKI 989
+P L P D ++ K + SF + G+L A+L ++ + S + +EK
Sbjct: 294 IPERLLSPPDPDTPYIIDLLQESAKHFFDSF-IPGRLQSASLPPEAAEVVLSRFLSTEKS 352
Query: 990 AEASYDHDLEVDGFEAFLGVA 1010
+ + Y+ F G+A
Sbjct: 353 SLSEYETLTMATAFARRNGIA 373
>gi|251765120|sp|Q5QMN4.2|RDR4_ORYSJ RecName: Full=Probable RNA-dependent RNA polymerase 4; Short=OsRDR4
Length = 1183
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 154/603 (25%), Positives = 237/603 (39%), Gaps = 134/603 (22%)
Query: 487 LRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQ--LFSSSKQTLVVPVQDV 544
+R S W +S + F IR+V A M + L S TL V + +V
Sbjct: 477 VRTESGWNMDEPYILSGRTIGQARDLFMHIRTVLTLAKYMLRFALIVSKTITLDVDLSEV 536
Query: 545 --EMIPD--------VEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHT--------- 585
++I D EV DG +DG G IS +AQKC S++
Sbjct: 537 LVKLIDDEPCLDEHGKEVFRDGERLIHTDGTGLIS----EDLAQKCTYSNSKGKLLEPQD 592
Query: 586 ------------------PSAFQIR--YGG--YKGVIAVD-RNSFRKLSLRRSMLKF--- 619
P Q+R Y G KG + VD R R + +R SMLK
Sbjct: 593 IVDCAASKLMGSNNTTEYPLLIQLRLFYNGSAVKGTVLVDKRLPPRTIHIRPSMLKIKTY 652
Query: 620 ---------------------------ESRNRMLNVTKWSESMPCFLNREIISLLSTLGV 652
+S N V+ + S F + +I+LL GV
Sbjct: 653 PELSGVQSVNSLDIVSARNAKKSLSGVQSVNSFEIVSTSNRSGRTFTSNNLIALLHYGGV 712
Query: 653 KDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNIL-VKMLLQGYEPNVEPYLS 711
+E F + Q + + AL++ N D ++ + +M+L G P E YL
Sbjct: 713 PEEFFMELLQTAIEEADNARFDYAGALNI--AFNYADMEDSMPARMILSGI-PLEESYLQ 769
Query: 712 MMLLSHHENQLSDLKSRC----RIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELES 767
L + LS L+ + +I + L+G D TG L +V V + +
Sbjct: 770 SRL-----DFLSLLERKGIKNGKIPIDDCYYLMGTADPTGKLGPNEVCVILDYGQ----- 819
Query: 768 KDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEE--KDYVDCIIFPQK 825
V G VLV K P LHPGD+ VL+A Y +E+ + I+FP
Sbjct: 820 ---------------VSGDVLVYKYPGLHPGDIHVLKATYSSDIEKVVGNSKHAILFPTT 864
Query: 826 GERPHPNECSGGDLDGDIFFISWDNDLI----PCET-EPPMDYTGRRSRIMD--HDVTLE 878
G+R +E + D DGDI+++S + L+ P + P + G + + + ++ LE
Sbjct: 865 GQRSLADEMANSDFDGDIYWVSLNPKLLEHFKPSKPWVPAITPNGTKQKGPEDFNESELE 924
Query: 879 EI--HKFF-VDYMINDTLGAISTAHLVHADR--------DPDKARSSKCLHLATLHSMAV 927
+ H+F + + +T LV+ DR K K L L L+ +A+
Sbjct: 925 RVLFHEFLKTRFAPSYARATAATNWLVYMDRLLTVSLDESEKKLIEKKMLKLVDLYYLAL 984
Query: 928 DFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSE 987
D K G +P L K++P FM+R P Y S +LGK+Y D +RS+ +
Sbjct: 985 DAPKMGNKVNIPRDLMVKQYPHFMDR--SPSYHSSSILGKIYDKAGDP-KPLRSDNVQPT 1041
Query: 988 KIA 990
I+
Sbjct: 1042 SIS 1044
>gi|224148789|ref|XP_002336714.1| hypothetical protein POPTRDRAFT_593566 [Populus trichocarpa]
gi|222836572|gb|EEE74979.1| hypothetical protein POPTRDRAFT_593566 [Populus trichocarpa]
Length = 196
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 90/170 (52%), Gaps = 7/170 (4%)
Query: 896 ISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMERED 955
I +H+VHAD A KCL LA L + +VDF KTG MP LKPK +PDFM +E+
Sbjct: 25 IPKSHVVHADLSEYGALDEKCLTLAELAATSVDFPKTGKIVSMPSDLKPKIYPDFMGKEE 84
Query: 956 KPRYISFGVLGKLYRATLDSIMQIRSNAIWSE---KIAEASYDHDLEVDGFEAFLGVAES 1012
Y S +LG+LYR + A SE + YD DLEV G F+ A
Sbjct: 85 HQSYKSKKILGRLYRQ-IKDAYDDDDVAASSELNFVRGDIPYDLDLEVPGVTDFISDAWD 143
Query: 1013 HKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRI 1062
K Y+ ++N L+ Y E+E++T ++ S + +R+ GD+K+R+
Sbjct: 144 QKCSYDGQLNGLLAQYKVKREEEVVTWHV---WSMPKGSSRKQGDLKERL 190
>gi|302782930|ref|XP_002973238.1| hypothetical protein SELMODRAFT_413790 [Selaginella moellendorffii]
gi|300158991|gb|EFJ25612.1| hypothetical protein SELMODRAFT_413790 [Selaginella moellendorffii]
Length = 878
Score = 94.7 bits (234), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 127/526 (24%), Positives = 215/526 (40%), Gaps = 87/526 (16%)
Query: 465 ILQDGIVIGDKHYEFLAFSASQLRNN---------SVWMFASNDEVSAEDVRGWMGCFNK 515
I++ G +G +H+E+ + R N F ++A D+ F K
Sbjct: 162 IIERGFDVGLRHFEYFVHKEEKKRKNMRKVKQTRQQRSFFVCTKSIAASDLVDPH--FLK 219
Query: 516 IRSVSKCAARMG--------QLFSSSKQTLVVPVQDVEMIP--DVEVTSDGNTYCFSDGI 565
RS+ C + QL++ Q + P ++ V +G +DG
Sbjct: 220 FRSMDACRKYIMHIHTVPCLQLYNKRLQLALSKTWTANHDPGGEIAVGCNGKPLIHTDGT 279
Query: 566 GKISLSFARQVAQKCGLSHTPSAFQIR--YGG--YKGVIAVDRN-SFRKLSLRRSMLKFE 620
G IS A+QVA + P+ Q+R Y G KG + + + + R SMLK +
Sbjct: 280 GFISEDLAKQVAVNTSEEY-PALLQVRLFYHGIAVKGTLLTLKTLQHKTIVYRDSMLKVK 338
Query: 621 SRNRMLNVTKWSESMPCF---------LNREIISLLSTLGVKDEVFEAMQQQQLILLGKM 671
+ ++ N ++ C L+R +I+LL GV + F + Q+ +
Sbjct: 339 ADPKLANCPSFNSLEICTTSHKPPVASLSRYVIALLLEGGVPESFFIQVVQEAIAKAMTP 398
Query: 672 LINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRI 731
L + AA + + + D +M+L G P + +L L++ QL ++ +
Sbjct: 399 LQDIAAAHRLCSRFSFGDMPR---RMILAGI-PLTDHFLRNSLMTMIRTQLKRY-AKANV 453
Query: 732 YVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTK 791
+ L+G D T L QV + + + HR KVLV K
Sbjct: 454 PLEGSYYLMGSADPTNTLARNQVAILL----------ENGPLHR---------HKVLVYK 494
Query: 792 NPCLHPGDVRVLEAVYEMKLE----EKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFIS 847
+P +HPGDV V EA + +LE YV IIFP KG R +E + DLDGD+++I
Sbjct: 495 HPGMHPGDVHVFEATWNQELESCLGNSKYV--IIFPTKGPRSVVHEIANSDLDGDLYWIC 552
Query: 848 WDNDLIPCETEPPMDYTGRRSR---------IMDHDVTLEEIHKFFVDYMI--NDTLGAI 896
N+ + +P + + +R+ M +V + + F+ + N +
Sbjct: 553 -TNEQVSNLYKPQLPWQEKRTNGTTAVPSCLGMSPEVIMSRLVAMFLRAIFKPNFAISRA 611
Query: 897 STAHLVHADRDPDKA---------RSSKCLHLATLHSMAVDFAKTG 933
+T L+H D+ + R + L LA L+ +A+D KTG
Sbjct: 612 ATNWLIHMDKYLSTSFDNVREREFRQNCLLELADLYYLALDADKTG 657
>gi|347839298|emb|CCD53870.1| RNA Polymerase RNA dependante [Botryotinia fuckeliana]
Length = 1007
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 95/383 (24%), Positives = 163/383 (42%), Gaps = 67/383 (17%)
Query: 521 KCAARMGQLFSSSKQTLVVP---VQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVA 577
K AR + S ++ T+ V ++ E I + +V TY +DG G++SL+ AR++
Sbjct: 622 KLFARTALVVSRNRATVTVEETQIRRKEDIRNPDVNDPSKTYVMTDGAGRMSLALARKIV 681
Query: 578 QKCGLSHTPSAFQIRYGGYKGVIAVDRN-------------------------------- 605
K L++ PSAFQ R+G KG+ VDR
Sbjct: 682 LKLELAYIPSAFQGRFGQAKGLWIVDRTQDIENDWIELYGEQCKWKRGKKGSHDYGHPSH 741
Query: 606 -SFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVK---DEVFEAMQ 661
+F + + + ++L + + P + I+ L G+K +E+ A+
Sbjct: 742 RTFEVVGHSAPLKTADLNTQLLPILMHQATNPKTMENAIVGALKE-GLKQSLEELRSALN 800
Query: 662 QQQLILLGKMLINREAALDV----LQKLNGVDSKN--ILVKMLLQGYEPNVEPYLSMMLL 715
Q + L N V LQ L G+ +KN L +L G++P Y+ ++
Sbjct: 801 SPQELRCWNRLTNSSLQDRVKNGTLQWLGGLPTKNEDKLNLLLDAGFDPRRLQYVMDLVK 860
Query: 716 SHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHR 775
+ + ++LK R I V K + D G+L +V + F
Sbjct: 861 KSFDMKCAELKERLNITVAKSTKVYMVPDFWGVLEPNEVHL--------------DFSSF 906
Query: 776 VDDKTSIVKGK-----VLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPH 830
VD++T + + VLV +NP +P D++ + AV + +L + D I+F KG
Sbjct: 907 VDNETGLSDIQLEDMDVLVARNPAHYPSDIQRVTAVNKHEL--RHLKDVIVFSTKGYPAL 964
Query: 831 PNECSGGDLDGDIFFISWDNDLI 853
++ SGGD DGDI ++ WD ++
Sbjct: 965 ADKLSGGDYDGDIAWVCWDRAIV 987
>gi|343429506|emb|CBQ73079.1| conserved hypothetical protein [Sporisorium reilianum SRZ2]
Length = 1287
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 101/380 (26%), Positives = 157/380 (41%), Gaps = 91/380 (23%)
Query: 556 GNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSFRKL----- 610
G + +DG G +SL+ AR +AQ G PSAFQ R G KGV +D + R L
Sbjct: 508 GKSQEMTDGAGCVSLAVARDIAQHLGYDSIPSAFQGRVAGAKGVWYIDPAAERTLPNEKP 567
Query: 611 ----SLRRSMLKFE-SRNRMLNVTKWSESM--------PCFLNREIISLLSTLGVKDEVF 657
+R S K + +++ L++++ + P L+R+II +L + GV F
Sbjct: 568 VRWIEIRDSQNKIQYPQDKPLDLSQLVVDLLGPSRTFAPSTLSRQIILVLQSNGVPISTF 627
Query: 658 EAMQQQQLILLGKMLINREAALD--------VLQKLNGVDSKNIL-----VKMLLQG--- 701
MQ+ +L + + N + D V+++L V+S + QG
Sbjct: 628 ADMQRAELQAIADEISNWQGPSDTVRMRLAVVVERLCKVESTKAKRSTESAEHRAQGMES 687
Query: 702 ---------------------YEPNVEPYLSMMLLSHHENQ---------------LSDL 725
Y N + M LS HE L+DL
Sbjct: 688 QKGGSQANSSEGFGDDHREVFYGQNGRHLWNGMPLSKHERAYEMLLSGFHPEKCAYLADL 747
Query: 726 ----------KSRCRIYVPKGRLLIGCF--DETGILNYGQVFVRVTMTREELESKDQSFF 773
K R +P R D TG L G++ R + + + D
Sbjct: 748 LVEIAALAMSKVIKRFAIPVARSAEAMVIPDPTGTLEEGEIQFR--FSSDNIVDPDTRL- 804
Query: 774 HRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNE 833
R+ T + +G+VLVT++PCL P D+R + AV +L Y D ++F KG+RP +
Sbjct: 805 -RL---THVPEGQVLVTRHPCLLPTDIRKVRAVVRPELSL--YKDVVVFSTKGKRPLASL 858
Query: 834 CSGGDLDGDIFFISWDNDLI 853
SGGD DGD+ + W+ L+
Sbjct: 859 LSGGDYDGDLIRVFWEPKLV 878
>gi|342881586|gb|EGU82475.1| hypothetical protein FOXB_07061 [Fusarium oxysporum Fo5176]
Length = 1387
Score = 92.8 bits (229), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 84/325 (25%), Positives = 139/325 (42%), Gaps = 47/325 (14%)
Query: 563 DGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNS---------FRKLSLR 613
DGIG++S + AR++A GL TP AFQ R G KG+ VD S R
Sbjct: 712 DGIGRVSRNLARRIATHMGLLETPCAFQARIGSAKGMWIVDVEDDGLDNDDWIETYPSQR 771
Query: 614 RSMLKFES-RNRMLNVTKWSESM-PCFLNREIISLLSTLG-VKDEVFEAMQQQQLILLGK 670
+ FE +R V +WS + LN + I +L V ++ + + L +
Sbjct: 772 KWNCDFEDVHHRTFEVREWSRELRSAALNTQFIPVLEAQAPVPQDMRNVISRHLTNGLQE 831
Query: 671 MLINREAALDVLQKLNGVDSK---------------------NILVKMLLQGYEPNVEPY 709
+ + AA+ L G + +I+ ML G++ +
Sbjct: 832 EIGGQLAAMTHPTNLRGFTHRGFDRATLGNVPFVGALPEREEDIISYMLDAGFDATKCRF 891
Query: 710 LSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKD 769
L M+ ++ + Q LK++ I +P+ D TG L G+V + +
Sbjct: 892 LRDMVWNNQKRQADQLKAKMNIKIPRSTYAFMTVDFTGTLEEGEVQLAFS---------- 941
Query: 770 QSFFHRVDDKTSIVKG-KVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGER 828
S F + +++ G +LV + P D++ ++AV+ L K D I+F KG+
Sbjct: 942 -SKFQADGESDTLLDGIDILVARAPAHFVSDIQKVKAVFRPNL--KRLKDVIVFSSKGKS 998
Query: 829 PHPNECSGGDLDGDIFFISWDNDLI 853
P + SGGD DGD+ +I WD D++
Sbjct: 999 PLADMLSGGDYDGDLAWICWDPDVV 1023
>gi|451845380|gb|EMD58693.1| hypothetical protein COCSADRAFT_194603 [Cochliobolus sativus
ND90Pr]
Length = 1215
Score = 92.8 bits (229), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 122/503 (24%), Positives = 203/503 (40%), Gaps = 104/503 (20%)
Query: 513 FNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSD--------- 563
NK ++ K AR+ S + TL + + + D T D F+D
Sbjct: 470 LNKNQNFCKAFARIDLGLSRTTPTLCFSTEQIRHVDDKTSTDDPEDTQFNDTTLDWPPFP 529
Query: 564 -------GIGKISLSFARQV----AQKCGLSHT-PSAFQIRYGGYKGVIAVDRNSFRK-- 609
G +S+ A+++ + G++ PSAFQ R GG KG+ + F K
Sbjct: 530 DGTVMDDGCCVMSVGAAKKIWDLYTKATGVTDPLPSAFQGRIGGAKGIWVISAEKFTKDT 589
Query: 610 ------LSLRRSMLKFESRN------RMLNVTKWSES-MPCFLNREIISLLSTLGVKDEV 656
+ + S KF+ N R V+ +S + P L+ I +L+ GV E
Sbjct: 590 DHLEPWIEINESQWKFQPPNDQSPYHRTFEVSNYSSTPSPSELHSSFIPILADRGVTKE- 648
Query: 657 FEAMQQQQLILLGKMLINREAALDVLQKL---------NGVDSK---------------- 691
A+ L L K IN L+VLQ NG ++K
Sbjct: 649 --AISDLMLDSLEKERIN---LLNVLQDATKVHEWVYRNGANTKLREETHGRVGQPASLK 703
Query: 692 NILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNY 751
+ +L G++P PYL+ L S ++ +++ R+ +PK L G D G+LN
Sbjct: 704 EKALNLLESGFDPLKFPYLAQNLESFIMSRQIFQEAKLRVLLPKSTFLYGVADPLGVLNP 763
Query: 752 GQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKL 811
G++ + + D++ R D + +VLV + P D++ + V +L
Sbjct: 764 GEIQILFSWP-----FVDETTNERYSDLRDL---EVLVARQPACRRSDIQKVRTVIHPEL 815
Query: 812 EEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI--------PCETEPPMDY 863
VD +F KG P + GGD DGDIF+I W++ L+ P + P +
Sbjct: 816 SH--LVDVAVFSSKGPFPLAGKLQGGDYDGDIFWICWEDTLVQPFFNAPAPVRSPNPSLF 873
Query: 864 -----TGRRSRIMD--HDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKC 916
T + I+D ++ K ++ + +L ++T + A+R +A S C
Sbjct: 874 GIKKITEKLKDIVDTKRPDNVDTFLKRAFEFRDHPSLLGLAT---ILAER---QAYSENC 927
Query: 917 LHLATL------HSMAVDFAKTG 933
+H TL H + VD +K G
Sbjct: 928 VHSGTLEKLYDVHDLLVDASKQG 950
>gi|115400193|ref|XP_001215685.1| predicted protein [Aspergillus terreus NIH2624]
gi|114191351|gb|EAU33051.1| predicted protein [Aspergillus terreus NIH2624]
Length = 1285
Score = 90.1 bits (222), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 124/562 (22%), Positives = 225/562 (40%), Gaps = 92/562 (16%)
Query: 500 EVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPD--VEVTSDGN 557
E+S E + W C + S C +LF + L + V++ P+ + + +
Sbjct: 556 EMSLEALIEWHLCLDDNMGQSNC-----KLFQRTSLGLSKTFETVKLTPNQIIHLKDEPG 610
Query: 558 TYCFSDGIGKISLSFARQVAQKCGLSHT-PSAFQIRYGGYKGVIAVDRNSFRK------L 610
+DG +S A+++ G++ + PSAFQ R G KG+ VD++ L
Sbjct: 611 RPVMNDGCALMSRGLAKKICVILGITGSIPSAFQGRIAGAKGLWMVDKHDSDVSEEDIWL 670
Query: 611 SLRRSMLKF-----------ESRNRMLNVTKWSESM-PCFLNREIISLLSTLG-VKDEVF 657
+ S LK + V KWS+ + P LN +++++L G V++ +
Sbjct: 671 QISDSQLKIKPHPAEWKTLIDPEKLTFEVVKWSKPLHPVSLNIQLLAILERGGPVRERIA 730
Query: 658 E----AMQ----------QQQLILLGKMLINR---EAALDVLQKLNGVDSKNILVKMLLQ 700
E MQ ++ +L + LI + D + + ++++
Sbjct: 731 ELTRAGMQSIWKDFAEVLERNCPILCRSLIQKTKPPGEQDRRMEDWAASNSECVIRLCEA 790
Query: 701 GYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTM 760
G++P YL L + L ++ I VP D G+L +V +
Sbjct: 791 GFKPRSFRYLRHRLRNCLRELLERYENELHIEVPLSTYAFCIADPYGVLKPDEVHFGFSS 850
Query: 761 TREELESK-DQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDC 819
+ + + + + +D VLV + P P D++ + AV++ +L + + D
Sbjct: 851 NWRDPQGQFEDNLLDGMD---------VLVARVPAHFPSDIQRVRAVWKPEL--RHFKDV 899
Query: 820 IIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPC--ETEPPMDYTGRRSRIMDHDVTL 877
I+FP G+ P ++ SGGD DGD ++ WD +++ ++ P +Y + +H V +
Sbjct: 900 IVFPTTGDVPLAHKLSGGDYDGDTPWVCWDQEIVQNFQNSDLPREYPPEHFGLTNHSVPM 959
Query: 878 EEIHKF--FVDYMI--NDTLGAISTAHLVHADRDPDKA-RSSKCLHLATLHSMAVDFAKT 932
+I F+ I N TL ++ + H D++ S + LA+L S VD K
Sbjct: 960 RDIQSVDEFLQSAITYNLTLSSLGKCTIEHERLAYDESIGSPNAMKLASLLSHLVDARKA 1019
Query: 933 GA-----------------PAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDS 975
G E+P P+ P ER++ Y+ F V+ K R L
Sbjct: 1020 GTHHSEQAWHEFRKQVSPRARELPAYKNPQRRP---ERKNIVDYLLFEVVKKEKRTVLSQ 1076
Query: 976 IMQIRSNAIWSEKIAEASYDHD 997
W + + S D D
Sbjct: 1077 ---------WEKAYPQLSSDRD 1089
>gi|414586833|tpg|DAA37404.1| TPA: mediator of paramutation1 [Zea mays]
Length = 207
Score = 90.1 bits (222), Expect = 7e-15, Method: Composition-based stats.
Identities = 65/196 (33%), Positives = 96/196 (48%), Gaps = 22/196 (11%)
Query: 4 ATVWVSNIPQTAIAKDLLLFLESKLG-KNSVFALEIITDRSNWKSRGIGRVQFTSLDFKS 62
ATV VSNIP +AIA +LL F +S + + FA EI+ W SRG G VQF S +
Sbjct: 12 ATVRVSNIPASAIAAELLAFFDSAVTIAGATFACEIVAAHRGWLSRGHGFVQFDSSAAAT 71
Query: 63 KAQNLSLNDKLV-FNSQNLKISETHSDIVPRPVKAQHRVEDGVLHVGVMCKEERLRVLQT 121
A +L+ + +L F L +S +D++PR R L +G E L V +
Sbjct: 72 HAIDLASSGRLPPFLGSCLSVSPARADLLPRAPDLSLRAASASLILGNRVAERELEVAYS 131
Query: 122 FEGVRGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFSL 181
+GVR ++P RR++ ++ KH+ + +K+E+LFED+ E G L
Sbjct: 132 CDGVRAEVIPRMRRVDLYL--KHDSQ---------------SYKLEVLFEDINECFGCHL 174
Query: 182 DEGATVNGILFKLKYG 197
D IL +L G
Sbjct: 175 D---GTGAILLQLNQG 187
>gi|451994085|gb|EMD86556.1| hypothetical protein COCHEDRAFT_1034368 [Cochliobolus heterostrophus
C5]
Length = 158
Score = 89.7 bits (221), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 63/158 (39%), Positives = 84/158 (53%), Gaps = 18/158 (11%)
Query: 882 KFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLA 941
+FFV+Y+ ND LG I+ AHL AD + + CL LA LHS AVDF K+G PAEM
Sbjct: 3 RFFVNYIKNDALGPIAHAHLAQADFNENGVGDPICLELAELHSRAVDFPKSGIPAEMKRE 62
Query: 942 LKPKEFPDFMERE---DKPRYISFGVLGKLYRATLDSIMQIRSNAIWS----EKIAEASY 994
L+PK++P FME++ Y S +LG LY D + I W ++I EA +
Sbjct: 63 LRPKKWPHFMEKKYLSQHQIYKSKKILGLLY----DEVKLIDFEPQWENQFDKRILEA-F 117
Query: 995 DHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGAST 1032
D D E+ L A S K Y+E + LM +G T
Sbjct: 118 DLDQEL------LDKAASLKLSYDEALRPLMAKHGIRT 149
>gi|358377627|gb|EHK15310.1| hypothetical protein TRIVIDRAFT_122493, partial [Trichoderma virens
Gv29-8]
Length = 1284
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 85/338 (25%), Positives = 146/338 (43%), Gaps = 49/338 (14%)
Query: 561 FSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSFRK-----LSLRRS 615
+DGIG+IS S A++V + GLS PS FQ R G KG+ +D +S + + S
Sbjct: 589 MNDGIGRISPSLAKKVTEALGLSDCPSCFQGRLGSAKGMWLIDVDSEEDSERDWVEVYPS 648
Query: 616 MLKFE-----SRNRMLNVTKW-SESMPCFLNREIISLLSTLGVKDE-----VFEAMQQQQ 664
K+E +R L + W SE LN++ I +L + + + E +Q+
Sbjct: 649 QRKWECDYDDPHHRTLEIRNWPSELKSASLNQQFIPVLEARSPQPDAMRRVISEHLQRAL 708
Query: 665 LILLG------------KMLINREAALDVLQKLNGV--------DSKNILVKMLL-QGYE 703
LG ++ I++ + L+G DS V LL G++
Sbjct: 709 HADLGEQAAAMKEPMSLRLWIHQSGPSKNDRSLDGSAKFLAGLPDSGADKVAFLLDSGFD 768
Query: 704 PNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTRE 763
YL ++ + + LK++ I +P + D + L G+V + + T+
Sbjct: 769 QRRMKYLKELVWDMCKKKADTLKTKMNITIPCSAYIYMAADFSSTLEEGEVHLSFS-TKF 827
Query: 764 ELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFP 823
+ E + +D +LV + P P D++ + V +L + D IIF
Sbjct: 828 QAEGFSDTLLEHMD---------ILVARAPAHFPSDIQRVRVVSRPEL--RKLKDVIIFS 876
Query: 824 QKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPM 861
KG++P + SGGD DGD+ ++ WD +++ PM
Sbjct: 877 TKGDKPLADMLSGGDYDGDMAWVCWDQNIVKNFDNAPM 914
>gi|297832166|ref|XP_002883965.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329805|gb|EFH60224.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
subsp. lyrata]
Length = 934
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 105/211 (49%), Gaps = 27/211 (12%)
Query: 789 VTKNPCLHPGDVRVLEAVYEMKLEEKDYVD----CIIFPQKGERPHPNECSGGDLDGDIF 844
V +NP LH GD+ VL+A Y LE DYV + FPQKG R +E +GGD DGD++
Sbjct: 584 VYRNPGLHFGDIHVLKATYVKALE--DYVGNSKYAVFFPQKGPRSLGDEIAGGDFDGDMY 641
Query: 845 FISWDNDLI----PCE-----TEPPMDYTGRRSRIMDHDVTLEEIHKFFVD--YMINDTL 893
FIS + L+ P E ++P Y+GR+ + + EE+ K F+ + D +
Sbjct: 642 FISRNPKLLEYFKPSEPWVSSSKPSKIYSGRKPSELSEEELEEELFKMFLKARFCKRDVI 701
Query: 894 G-------AISTAHLVHADRDPDKA--RSSKCLHLATLHSMAVDFAKTGAPAEMPLALKP 944
G I L D + R L L ++ A+D K GA ++P L+
Sbjct: 702 GMAADCWLGIMDPLLTLGDESAKEKYERKKNILKLIDIYYDALDAPKKGAKVDLPPDLEI 761
Query: 945 KEFPDFMEREDKPRYISFGVLGKLYRATLDS 975
K FP +MER+ K + S +LG ++ T+DS
Sbjct: 762 KNFPHYMERDPKRDFRSTSILGLIF-DTVDS 791
>gi|356497593|ref|XP_003517644.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Glycine
max]
Length = 953
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 110/424 (25%), Positives = 183/424 (43%), Gaps = 67/424 (15%)
Query: 579 KCGLSHTPSAFQIRYGGYKGVIAVDRN-SFRKLSLRRSMLKFE--------SRNRMLNVT 629
+C L H A KG + V+R R + +R SM+K E S N + VT
Sbjct: 415 QCRLFHMGHAI-------KGTLLVNRKLPPRTIQVRPSMIKVEKDPSVHMQSINSLEVVT 467
Query: 630 KWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVD 689
++ +L++ +I+LLS GV +E F + + + + N+ +AL D
Sbjct: 468 TSNKPKRGYLSKHLIALLSFGGVPNEFFMDLLRSNMEDANHVYSNKRSALRASINCGEKD 527
Query: 690 SKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGIL 749
N +M+L G P EP+L L + L+ ++Y+P L+G D TG L
Sbjct: 528 EYNA-AEMILCGI-PLDEPFLKHHLSRFAREEKKKLRG-GKLYMPDCFYLMGTVDPTGHL 584
Query: 750 NYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEM 809
QV + + + + IV G VLV +NP LH GD+ ++A Y
Sbjct: 585 KKNQVCI-------------------IHENSQIV-GDVLVYRNPGLHFGDIHKMDATYVK 624
Query: 810 KLEEKDYVD----CIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIP--------CET 857
+LE YV I FP+ G R +E +GGD DGD +++S L+ E
Sbjct: 625 ELE--SYVGHSKYGIFFPRVGTRSVADEIAGGDFDGDTYWVSNHPQLLQYFRKGDPWIEN 682
Query: 858 EPPMDYTGRRSRIMDHDVTLEEIHKFF--VDYMINDTLGAISTAHLVHADR--------- 906
P+D + ++ + EE+ + F + + +G + + DR
Sbjct: 683 SVPLDSSVKKPSEFSPEELEEELFRLFLKTRFQPSYAMGMSENSWMALMDRLLTLNNCTN 742
Query: 907 DPDKAR-SSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVL 965
+ +K R L L ++ A+D K+G ++P L + FP +ME++ + S +L
Sbjct: 743 ENEKERVKENMLKLIDIYYEALDAPKSGRKVQVPNDLIAELFPHYMEKDKS--FTSTSIL 800
Query: 966 GKLY 969
G +Y
Sbjct: 801 GLIY 804
>gi|302893516|ref|XP_003045639.1| hypothetical protein NECHADRAFT_39599 [Nectria haematococca mpVI
77-13-4]
gi|256726565|gb|EEU39926.1| hypothetical protein NECHADRAFT_39599 [Nectria haematococca mpVI
77-13-4]
Length = 1363
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 82/325 (25%), Positives = 138/325 (42%), Gaps = 47/325 (14%)
Query: 563 DGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSFRK-----LSLRRSML 617
DGIG++S S AR+VA GL P AFQ R G KG+ VD + S
Sbjct: 688 DGIGRMSRSLARKVATHLGLLEAPCAFQARIGSAKGMWIVDVEDDGLDDDDWIETYPSQR 747
Query: 618 KFES-----RNRMLNVTKWSESM-PCFLNREIISLLSTLGVKDEVF-EAMQQQQLILLGK 670
K+E +R V +WS + P LN++ I +L + + +A+ + L +
Sbjct: 748 KWECDYLDVHHRTFEVREWSRELRPAALNQQFIPVLEAQAPRPRLMRDAIAAHLVNGLDE 807
Query: 671 MLINREAALDVLQKLNGVDSK---------------------NILVKMLLQGYEPNVEPY 709
+ + AA+ L G + +++ +L G+E +
Sbjct: 808 EIGGQMAAMAHPTNLRGWTHRGFDRSSVGHVPFLGGLPERDEDVISYLLDAGFEATKCRH 867
Query: 710 LSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKD 769
L ++ S + Q LK++ I +P+ D TG L G+V + +
Sbjct: 868 LRDLVWSMQKRQADQLKAKMNIKIPRSTYAYMVVDFTGTLEEGEVQLAFS---------- 917
Query: 770 QSFFHRVDDKTSIVKG-KVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGER 828
S F + +++ G +LV + P D++ ++AV+ L K D I+F KG+
Sbjct: 918 -SKFQADGESDTLLDGIDILVARAPAHFVSDIQKVKAVFRPNL--KRLKDVIVFSSKGKS 974
Query: 829 PHPNECSGGDLDGDIFFISWDNDLI 853
P + SGGD DGD ++ WD ++
Sbjct: 975 PLADLLSGGDYDGDKAWVCWDPKIV 999
>gi|156058730|ref|XP_001595288.1| hypothetical protein SS1G_03377 [Sclerotinia sclerotiorum 1980]
gi|154701164|gb|EDO00903.1| hypothetical protein SS1G_03377 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 1390
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 92/384 (23%), Positives = 165/384 (42%), Gaps = 55/384 (14%)
Query: 514 NKIRSVSKCAARMGQLFSSSKQTLVVP---VQDVEMIPDVEVTSDGNTYCFSDGIGKISL 570
N + K AR + S ++ T+ V ++ E I + +V + TY +DG G++SL
Sbjct: 615 NDYQPYMKLFARTALVVSRNRATVTVDQAHIRRREDIRNPDVNNPKKTYVMTDGAGRLSL 674
Query: 571 SFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSFRK---LSLRRSMLKFES------ 621
+ AR++ + LS+ P+AFQ R+G KG+ VDR+ + + L K+E
Sbjct: 675 ALARKIVFELELSYIPAAFQGRFGEAKGLWIVDRSEDIESDWIELYDEQCKWERGEEGSP 734
Query: 622 -----RNRMLNVTKWSESMPCF-LNREIISLL-----STLGVKDEVFEAMQQ-------- 662
+R V S + LN +++ LL +++ + A+++
Sbjct: 735 EFDHWSHRTFEVVGHSAPLKTADLNTQLLPLLVHQATDPRAMRNAILNALKEGLKQSLEE 794
Query: 663 --------QQL---ILLGKMLINREAALDVLQKLNGVDSK--NILVKMLLQGYEPNVEPY 709
Q+L I L + +Q G+ +K + L +L G++P Y
Sbjct: 795 LKTALTSPQELRSWIRLTNSSVQDRVKNGAIQWRGGLPAKHEDRLSTLLDAGFDPRKLHY 854
Query: 710 LSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKD 769
+ + + + +LK R I V K + D G+L +V + + +
Sbjct: 855 IMELAKKAFDMKCEELKERLNITVAKSTKVYMVPDFWGVLEPNEVHLNFSSFVDNESGLS 914
Query: 770 QSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERP 829
+ VD VLV +NP +P D++ + AV + +L + D I+F KG
Sbjct: 915 DTQLENVD---------VLVARNPAHYPSDIQRVTAVSKHEL--RHLKDVIVFSTKGYPS 963
Query: 830 HPNECSGGDLDGDIFFISWDNDLI 853
++ SGGD DGDI ++ WD ++
Sbjct: 964 LADKLSGGDYDGDIAWVCWDPAIV 987
>gi|342884280|gb|EGU84517.1| hypothetical protein FOXB_04968 [Fusarium oxysporum Fo5176]
Length = 206
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 100/201 (49%), Gaps = 17/201 (8%)
Query: 513 FNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSF 572
+ +R ++ A R+G LFSS+ + E IP+VE T+D Y F+DG G I+L
Sbjct: 1 YASLRRIAAKAKRIGLLFSSATTVTTINPDRCEDIPNVE-TAD---YIFTDGCGLIALKL 56
Query: 573 ARQVAQKCGL-----SHTPSAFQIRYGGYKGVIAVDRNSFRK---LSLRRSMLKFE-SRN 623
A ++A++ + +TPS FQIRY GYKGV+ VD ++ L LR+SM KF +
Sbjct: 57 ANELARRTRILLRDNRYTPSVFQIRYRGYKGVVIVDPRMTKQNPLLKLRKSMKKFNGGED 116
Query: 624 RMLNVTKWSESMP-CFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVL 682
V ++S+ +LN E I LL L + E + Q+ LL + A L
Sbjct: 117 HSFAVVEYSKPFSYGYLNDETIILLHALRISQETLLSKQRDHFRLLSNAKTDFRDAFRFL 176
Query: 683 QKLNGVDSKNILVKMLLQGYE 703
+N D ++LL G E
Sbjct: 177 SYINQPDHAE---RVLLDGGE 194
>gi|378728492|gb|EHY54951.1| RNA-directed RNA polymerase [Exophiala dermatitidis NIH/UT8656]
Length = 1308
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 106/431 (24%), Positives = 176/431 (40%), Gaps = 69/431 (16%)
Query: 561 FSDGIGKISLSFARQVAQKCG-LSHTPSAFQIRYGGYKGVIAVD-RNSFRKLSLR----- 613
+DG +S + A+ + Q+CG PSA Q R G KG+ VD +SF +S R
Sbjct: 582 MNDGCALMSYNLAKNIWQRCGGQGPPPSAVQGRISGAKGLWLVDYHDSFADVSQRGFWIQ 641
Query: 614 --RSMLKF---------ESRNRMLNVTKWS-ESMPCFLNREIISLLSTLGVK-------- 653
S LK + R V K + E LN ++I++L GV
Sbjct: 642 VSDSQLKIKPHPRDRSADESQRTFEVLKSAGECKEAHLNIQLITILEDRGVPRAALRKLL 701
Query: 654 --------DEVFEAMQQQQLILLGKMLINREAALDVLQKLNG--VDSKNILVKMLLQGYE 703
+ + EAM+ + + + +V + L +D ++ + +L G++
Sbjct: 702 EDDTKSYFESLKEAMEDPKALRAWMQEHGLASRTEVTRFLGSFPLDRRDQMKYLLESGFD 761
Query: 704 PNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTM-TR 762
P L + + +++ R I VP ++ D G+L GQVF+ T
Sbjct: 762 PTECARLKDLAAGFLQEYMTNYVERLWINVPCSTVVFCAPDPLGVLEEGQVFINFTSPVY 821
Query: 763 EELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIF 822
+ ++ + +D VLV +NP D+++ +AVY+ +L Y + I+F
Sbjct: 822 DPVKGYHDTVLEGLD---------VLVARNPAYLASDMQLCQAVYKHELHL--YKNVILF 870
Query: 823 PQKGERPHPNECSGGDLDGDIFFISWDNDLIP--CETEPPMDYTGRRSRIMDHDVTLEEI 880
P KG++P + SGGD DGD + WD D++ T PP T + ++ L I
Sbjct: 871 PVKGKQPLASLLSGGDYDGDTVTVIWDPDIVRNFSNTSPPKLPTEEQCGMVQMSRPLSSI 930
Query: 881 HKFFVDYMINDTL-------------GAISTAH--LVHA---DRDPDKARSSKCLHLATL 922
+ + + D L G S+ H LV++ R D + LA L
Sbjct: 931 YDGVQAFPMQDFLEHCVSFNARPGLMGVCSSEHEKLVYSLSLKRGCDILAHQGAIKLAAL 990
Query: 923 HSMAVDFAKTG 933
VD +K G
Sbjct: 991 AGYLVDSSKQG 1001
>gi|453087546|gb|EMF15587.1| hypothetical protein SEPMUDRAFT_123844 [Mycosphaerella populorum
SO2202]
Length = 1406
Score = 87.4 bits (215), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 132/540 (24%), Positives = 210/540 (38%), Gaps = 124/540 (22%)
Query: 496 ASNDEVSAEDVRGWMGCF--NKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVT 553
AS+ +S D+ W + NK ++ K R+ L S + V+ ++ +PD T
Sbjct: 629 ASSPTMSLCDIAQWCLPYSTNKKQAARKAYMRIELLLSRTISATVLQPGEIAHVPDQVAT 688
Query: 554 S--DGNTY-----------------CFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYG 594
D Y SDG ++S A Q ++K L P+ QIR
Sbjct: 689 RERDDRRYEDPNLSHRFYEEYDPEMVMSDGCNRMSYWIAYQYSKKLCLKRVPATLQIRAA 748
Query: 595 GYKGVIAVD---------RNSFRKLSLRRSMLKF--------ESRNRMLNVTKWSE-SMP 636
G KG+ +D R + L+L S +K + +NV K + + P
Sbjct: 749 GAKGLWYIDEPAHGDPDIRPAGPLLNLAPSQVKVHRDTFYGCDEETLSVNVVKANPGARP 808
Query: 637 CFLNREIISLLSTLGVK----------------DEVFEAMQQQQLILLGKMLIN------ 674
L+ + +L GV D EA+ + L + + +
Sbjct: 809 SLLHIGYLPILVDRGVPLENIRTLVRDLVTRQTDGFLEALAADGSLRLRQWIASHNEFFE 868
Query: 675 ---REAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLS---MMLLSHHENQLSDLKSR 728
REA +D+L + I ++ML G+ P YL+ ML S + DLK++
Sbjct: 869 ARRREAGIDLLAGFPKALEERI-IQMLEAGFAPKQNKYLASEVKMLASSY----FDLKNK 923
Query: 729 -CRIYVPKGRLLIGC-----------FDETGILNYGQVFVRVTMTREELESKD----QSF 772
+I +PK L G D TG L G+V V E + D +F
Sbjct: 924 NFKIELPKSTTLWGIAEPKTGHMRGKLDPTGSLRPGEVCV---CFEEPFDVADVGTRVNF 980
Query: 773 FHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPN 832
+D +LV +NP + P D++ + AV++ +L + Y IIF +G RP N
Sbjct: 981 LDDID---------ILVARNPAMGPSDIQKVRAVFKPQLAK--YAGNIIFSARGMRPLAN 1029
Query: 833 ECSGGDLDGDIFFISWDNDLI------PCETEPP----MDYTGRRSRIMDH--DVTLEE- 879
+ GGD DGD F+ +W+ L P +PP + T + ++ DH D E+
Sbjct: 1030 KLQGGDYDGDAFWFTWEPLLTEPFKNAPAPWKPPDPDQLGITKDKYKLSDHVDDPNSEQQ 1089
Query: 880 ----IHKFFVDYMINDTLGAISTAH--LVHADRDPDKARSSKCLHLATLHSMAVDFAKTG 933
+ M + LG ++ H LV+A S + + LH VD K G
Sbjct: 1090 WCRYLSTMAAKRMDANMLGIVTLFHERLVYAGL---PIGSEEVMRFVYLHDYLVDADKQG 1146
>gi|367029127|ref|XP_003663847.1| hypothetical protein MYCTH_2306054 [Myceliophthora thermophila ATCC
42464]
gi|347011117|gb|AEO58602.1| hypothetical protein MYCTH_2306054 [Myceliophthora thermophila ATCC
42464]
Length = 1364
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 102/421 (24%), Positives = 165/421 (39%), Gaps = 70/421 (16%)
Query: 533 SKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIR 592
SK T V + ++I E +DGIG++S S AR++ GL+ PSA Q R
Sbjct: 640 SKTTPTVTFEPGQIIHRPEDILSPTKKIMNDGIGRMSRSVARKIRDLLGLTDIPSAVQGR 699
Query: 593 YGGYKGVI---AVDRNSFRKLSLRRSMLKF------ESRNRMLNVTK-WSESMPCFLNRE 642
G KG+ D + S K+ E +R L V K SE P LN +
Sbjct: 700 IGSAKGMWLMDVTDHGDADWIETYPSQRKWNCDDADEPFHRTLEVRKVASELKPASLNLQ 759
Query: 643 IISLLSTLGVKDEVFE-AMQQQQLILLGKMLINREAALD--------VLQKLNG------ 687
+ +L V + A+ + L L K +++ AL V + N
Sbjct: 760 FLPVLEDRAVDKKAMRCAISNRLLNDLAKQFEDQKTALKRPLQFRQWVHENSNNNRPERV 819
Query: 688 ------------VDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPK 735
D IL ++ G++P + YL + + + L+++ I V +
Sbjct: 820 KHGQVPFLGGLPADKNEILALLMNSGFDPKSQRYLRDLAWELQKQKCDTLRTKLNIKVGR 879
Query: 736 GRLLIGCFDETGILNYGQVFVRVTMT-REELESKDQSFFHRVDDKTSIVKGKVLVTKNPC 794
+ D G+L +V V + R+EL+ + D VLV ++P
Sbjct: 880 SAYIYMVVDFWGVLEENEVHVGFSSKFRDELDGVSYTLLADCD---------VLVARSPA 930
Query: 795 LHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI- 853
D++ + AV++ +L D I+F KG+ P ++ SGGD DGD ++ WD +++
Sbjct: 931 HFVSDIQKVRAVFKPELHA--LKDVIVFSTKGDIPLADKLSGGDYDGDFAWVCWDPEIVD 988
Query: 854 -----PCETEPPMDY---------------TGRRSRIMDHDVTLEEIHKFFVDYMINDTL 893
EP + TG+ R HD + I K F M + L
Sbjct: 989 NFENAEVPVEPDLSAYLRKDKTTFDELVCRTGKTGRRARHDAVYDMIDKSFQFAMQPNYL 1048
Query: 894 G 894
G
Sbjct: 1049 G 1049
>gi|302823993|ref|XP_002993644.1| hypothetical protein SELMODRAFT_431698 [Selaginella moellendorffii]
gi|300138572|gb|EFJ05336.1| hypothetical protein SELMODRAFT_431698 [Selaginella moellendorffii]
Length = 884
Score = 86.3 bits (212), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 125/537 (23%), Positives = 210/537 (39%), Gaps = 105/537 (19%)
Query: 465 ILQDGIVIGDKHYEFLAFSASQLRNN---------SVWMFASNDEVSAEDVRGWMGCFNK 515
I++ G +G +H+E+ + R N F ++A D+ F K
Sbjct: 164 IIERGFNVGLRHFEYFVHKEEKKRKNMSKVKQTRQQRSFFVCTKSIAASDLVDPH--FLK 221
Query: 516 IRSVSKCA-------------------ARMGQLFSSSKQTLVVPVQDVEMIP--DVEVTS 554
RS+ C +R S Q + P ++ V
Sbjct: 222 FRSMDACRKYIMHIHTVPCLQLYNKRFSRTSSFLGSRLQLALSKTWTANHDPGGEIAVGC 281
Query: 555 DGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIR--YGG--YKGVIAVDRN-SFRK 609
+G +DG G IS A+Q P+ Q+R Y G KG + + +
Sbjct: 282 NGKPLIHTDGTGFISEDLAKQ--------EYPALLQVRLFYHGIAVKGTLLTLKTLQHKT 333
Query: 610 LSLRRSMLKFESRNRMLNVTKWSESMPCF---------LNREIISLLSTLGVKDEVFEAM 660
+ R SMLK ++ ++ N ++ C L+R +I+LL GV + F +
Sbjct: 334 IVYRDSMLKVKADPKLANCPSFNSLEICTTSHKPPVASLSRYVIALLLEGGVPESFFIQV 393
Query: 661 QQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHEN 720
Q+ + L + AA + + + D +M+L G P + +L L++
Sbjct: 394 VQEAIAKAMTPLQDIAAAHRLCSRFSFGDMPR---RMILAGI-PLTDHFLRNSLMTMIRT 449
Query: 721 QLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKT 780
QL ++ + + L+G D T L QV + + + HR
Sbjct: 450 QLKRY-AKANVPLEGSYYLMGSADPTNTLARNQVAILL----------ENGPLHR----- 493
Query: 781 SIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLE----EKDYVDCIIFPQKGERPHPNECSG 836
KVLV K+P +HPGDV V EA + +LE YV IIFP KG R +E +
Sbjct: 494 ----HKVLVYKHPGMHPGDVHVFEATWNQELESSLGNSKYV--IIFPTKGPRSVVHEIAN 547
Query: 837 GDLDGDIFFISWDNDLIPCETEPPMDYTGRRSR---------IMDHDVTLEEIHKFFVDY 887
DLDGD+++I N+ + +P + + +R+ M +V + + F+
Sbjct: 548 SDLDGDLYWIC-TNEQVSNLYKPQLPWQEKRTNGTTAVPSCLGMSPEVIMSRLVAMFLRA 606
Query: 888 MI--NDTLGAISTAHLVHADRDPDKA---------RSSKCLHLATLHSMAVDFAKTG 933
+ N + +T L+H D+ + R + L LA L+ +A+D KTG
Sbjct: 607 IFKPNFAISRAATNWLIHMDKYLSTSFDNVREREFRQNCLLELADLYYLALDADKTG 663
>gi|358392113|gb|EHK41517.1| hypothetical protein TRIATDRAFT_321718 [Trichoderma atroviride IMI
206040]
Length = 1316
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 86/335 (25%), Positives = 149/335 (44%), Gaps = 53/335 (15%)
Query: 560 CFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNS-------FRK--L 610
+DGIG+IS S A++VA+ GL+ PS FQ R G KG+ +D +S F K +
Sbjct: 612 VMNDGIGRISASLAKKVAELLGLTDCPSCFQGRLGSAKGMWLIDVDSEGDFEEDFEKDWV 671
Query: 611 SLRRSMLKFES-----RNRMLNVTKW-SESMPCFLNREIISLLSTL----GVKDEVFEAM 660
+ S K+E +R L + W +E LN++ I +L G+ V +
Sbjct: 672 EIYPSQRKWECDFKDVHHRTLEIRNWPAELKSASLNQQFIPVLEARSKDSGLMRRVMSSH 731
Query: 661 QQQQLIL-LG------------KMLINREAALDVLQKLNGV---------DSKNILVKML 698
Q+ L LG ++ I++ + L+G +S + + +L
Sbjct: 732 LQRALHADLGEQTDAMKDTMSLRLWIHQSGPSRNDRLLDGSAEFLAGLPNNSADKVAFLL 791
Query: 699 LQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRV 758
G++ YL +L ++ + LK++ I VP + D + L G+V +
Sbjct: 792 DSGFDQKRLKYLKDAVLDIYQKKADTLKTKMNITVPCSAYVYMAADFSSTLEEGEVHLSF 851
Query: 759 TMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVD 818
+ T+ ++E + ++D +LV + P P D++ + V +L + D
Sbjct: 852 S-TKFQVEGFSDTLLEQMD---------ILVARAPAHLPSDIQRVRVVSRPEL--RRLKD 899
Query: 819 CIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI 853
IIF KG P ++ SGGD DGDI ++ WD ++
Sbjct: 900 VIIFSTKGSVPLADKLSGGDYDGDIAWVCWDQSIV 934
>gi|238580928|ref|XP_002389446.1| hypothetical protein MPER_11425 [Moniliophthora perniciosa FA553]
gi|215451719|gb|EEB90376.1| hypothetical protein MPER_11425 [Moniliophthora perniciosa FA553]
Length = 316
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 122/260 (46%), Gaps = 33/260 (12%)
Query: 383 DHNVMSCYRALVTPMKIYCLGPELETSNYVVKNF-AKYASDFMRVTFVEEDWSKLPANAL 441
D + C +TP + GP E SN V++ + +++ +F+RV+F +E +L N
Sbjct: 48 DDGIFLCMHVQITPTGMIFDGPIPERSNRVIRQYKSEHHHNFLRVSFNDEGRLQLQFN-- 105
Query: 442 STSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFAS---- 497
R I + I R+ ++G+ + + + FL +S S L+ ++V+ AS
Sbjct: 106 -----REIDGDDF---IKRRVQPFFREGLRVAGRVFYFLGYSQSALKEHAVYFMASFEQD 157
Query: 498 NDEVSAEDVRGWMGCFNKIRSVSKC-------AARMGQLFSSSKQTLVVPVQDVEMIPDV 550
+++ V +G F + SK AAR+ Q F+++ T V +PD+
Sbjct: 158 GKQITTASVIESLGSFADLPFDSKLIYCPARYAARISQGFTATDPTTTEVENIVLDLPDI 217
Query: 551 EVT-SDGNTYCFSDGIGKISLSFARQVAQKCG---------LSHTPSAFQIRYGGYKGVI 600
E T +G +DG+G +S FAR + + LS QIR+ G KGVI
Sbjct: 218 ESTDKNGKKQIHTDGVGTMSPEFARSIHAERQSRRRGRRRPLSEYARVLQIRFLGSKGVI 277
Query: 601 AVDRN-SFRKLSLRRSMLKF 619
+VD S + + LR SM+KF
Sbjct: 278 SVDHTLSGKTVCLRPSMVKF 297
>gi|333440980|gb|AEF32765.1| RdRP2 [Ascaris suum]
Length = 384
Score = 85.5 bits (210), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/304 (24%), Positives = 132/304 (43%), Gaps = 59/304 (19%)
Query: 391 RALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIF 450
+ ++TP ++ + PEL N V++ + +RV F ++D +++ N +
Sbjct: 94 KVVLTPTRMLLVVPELLMGNRVLRTHDESGDRALRVQFRDDDGTRMKHNTVG-------- 145
Query: 451 SKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWM 510
PY I + + L G+ I D+H+ +LA S SQ+R+N + F D
Sbjct: 146 --PY--LIQTTVHNALVRGVYIADRHFVYLASSNSQMRDNGCYFFDDGDGGXXXXXXXXX 201
Query: 511 GCFNKIRSVSK---------------CAARMGQLFSSSKQTLVVPV-----QDVEMIPDV 550
ARMGQ F+ +K+ + + + ++I +
Sbjct: 202 XXXXXXXXXXXXXXXXXXXXXXXXXXLMARMGQCFTQAKECSIKLLHRRYNKTFDIIGGM 261
Query: 551 EVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSH-TPSAFQIRYGGYKGVIAVD-----R 604
+ S G Y FSDG G++S FA+++A L PS FQIR+ G KGV++VD R
Sbjct: 262 D--SSGEPYTFSDGCGRLSPEFAQRIADDLHLGKCVPSCFQIRFRGIKGVVSVDPWLTER 319
Query: 605 NSF-RKLSLRRSMLKFESRNRM------------------LNVTKWSESMPCFLNREIIS 645
S+ + ++ +M + +N++ + + K+S P LNR I+
Sbjct: 320 ASWATEHNIADNMENYNKKNKLYMLFRPSQDKFHAPLSHKIEIVKYSSPTPVCLNRPYIA 379
Query: 646 LLST 649
+L T
Sbjct: 380 ILLT 383
>gi|449296300|gb|EMC92320.1| hypothetical protein BAUCODRAFT_569676 [Baudoinia compniacensis
UAMH 10762]
Length = 1367
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 115/484 (23%), Positives = 199/484 (41%), Gaps = 97/484 (20%)
Query: 455 RTKIYSRILTILQ-DGIVIGDKHYEFLA---------FSASQLRNNSVWMFASN----DE 500
+ I +RIL +L+ D +++G K FL S ++ + FA D
Sbjct: 400 KGNITARILEMLKSDHMLLGQKWTAFLNKKRKVTSVDPSYDDSKSFQISFFAVEGAGLDS 459
Query: 501 VSAEDVRGWMGCF--NKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVE------- 551
++ + GW N + +K +R+ S + T+V +E I D+
Sbjct: 460 INVVEAAGWAVPLRNNAEQYAAKAYSRLDLPVSRTDATIVFAPDAIEHIADIMSDDVPDA 519
Query: 552 ----------VTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIA 601
+ SD +DG G I+ + AR+V L+ PSAFQ+R G KG++
Sbjct: 520 SDFNDASLPFLRSDQVPVAMTDGCGYITYAAARRVQSILNLTWLPSAFQVRIAGAKGLLV 579
Query: 602 VDRN---------------SFRKLSLRRSMLKFESRNRMLNVTKWSES----------MP 636
V ++ + RKL S L +R R L+V +S+S +P
Sbjct: 580 VRQDITQGDMAQERIGLTQTQRKLQYSDSDLDDPAR-RTLDVVDYSKSVRSSHIPPGFLP 638
Query: 637 CFLNREII--SLLSTLG--VKDEVFEAMQQ-------QQLILLGKMLINREAALDVLQKL 685
+R + ++L +G VK E +Q + +L + ++ AA +
Sbjct: 639 VLRDRGVPKEAILDVVGEQVKLETSGFLQALKSRSTLHRWVLCQRNVVGFRAAAGGIVLT 698
Query: 686 NGVDSKNI--LVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRC-RIYVPKGRLLIGC 742
G + I ++ +L +EP PYL +L + D+K++ ++++ ++
Sbjct: 699 AGFPANTIERILFLLESWFEPAQCPYLRKQVLD-FAGHVFDVKAKAWKLHLGSCTSVMMI 757
Query: 743 FDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKT------SIVKGKVLVTKNPCLH 796
D T L G+ ++ SF + D T S+ +LV +NPC+
Sbjct: 758 PDWTQTLKPGEAYL--------------SFSKPIKDGTSGRVWSSLAGMDILVARNPCIR 803
Query: 797 PGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI-PC 855
D++ L AV L D I+F +G R ++ SGGD DGDI ++ WD L+ P
Sbjct: 804 NSDMQKLRAVSCAAL--AGIFDVIVFSTQGPRSLASKLSGGDYDGDIAWVCWDPRLVLPF 861
Query: 856 ETEP 859
+ P
Sbjct: 862 KNAP 865
>gi|320587947|gb|EFX00422.1| RNA-dependent RNA polymerase [Grosmannia clavigera kw1407]
Length = 1358
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 100/411 (24%), Positives = 179/411 (43%), Gaps = 57/411 (13%)
Query: 490 NSVWMFASNDEVSAEDVRGWMGCFNKI-----RSVSKCAARMGQLFSSSKQTLVV-PVQD 543
+S W F E+ D+ W+ +N+ + K +R+ S + T+V P Q
Sbjct: 560 DSEWRFGH--ELQVHDMLEWLLQYNRFHENRTQPYLKLFSRIALGLSRTIPTVVFEPEQM 617
Query: 544 VEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVD 603
D+ + G +DGIG++SLS AR+V + GLS P+A Q R G KG+ +D
Sbjct: 618 RHHASDITAPATGK--VMNDGIGRMSLSVARKVRFELGLSDLPAAVQGRLGCAKGMWILD 675
Query: 604 RNSFRK-------LSLRRSMLKF-ESRNRMLNVTKWSESM-PCFLNREIISLLSTLGV-- 652
S R+ F + +R L V ++ ++ LN++++ +L +
Sbjct: 676 PTDTGGEDWIETYPSQRKWKCDFVDPDHRTLEVRNYASAVRSAGLNQQLLPVLEDRAIDK 735
Query: 653 -----------KDEVFEAMQQQQLILLGKMLI-----------NREAALDVLQKLNGV-D 689
+ ++ + Q+ L +L + +A ++ L G+ D
Sbjct: 736 SRMRTVIGDILRGNLYRDLATQRTALEHPLLFSAWVQENSRSRDERSAHCQVRFLGGLPD 795
Query: 690 SKNILVKMLLQG-YEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGI 748
S + +V+ LL G ++P V+ + + + + LK + + V + L D G+
Sbjct: 796 SDSEVVQFLLSGGFDPRVQKMIWDVAYKIQKAKCEKLKEKLNVRVGRTAYLHMVVDFLGV 855
Query: 749 LNYGQVFV------RVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRV 802
L G+V V +V E E D F + +V VLV ++P DV+
Sbjct: 856 LEEGEVQVCFSSKFQVDADSEPDERGDDGSFS----DSLLVGTDVLVARSPAHFASDVQR 911
Query: 803 LEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI 853
+ AV+ +L D +IF +KG+ P ++ SGGD DGD+ ++ WD ++
Sbjct: 912 VRAVFRKEL--CVLKDVVIFSRKGDSPLADKLSGGDYDGDMAWVCWDGRIV 960
>gi|367049126|ref|XP_003654942.1| hypothetical protein THITE_2079458 [Thielavia terrestris NRRL 8126]
gi|347002206|gb|AEO68606.1| hypothetical protein THITE_2079458 [Thielavia terrestris NRRL 8126]
Length = 1373
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 136/545 (24%), Positives = 218/545 (40%), Gaps = 95/545 (17%)
Query: 561 FSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVI---AVDRNSFRKLSLRRSML 617
+DGIG++S S AR++ GLS PSA Q R G KG+ D + S
Sbjct: 666 MNDGIGRMSRSVARKIRDALGLSDIPSAIQGRMGSAKGMWLMDVADAGDDDWIETYPSQR 725
Query: 618 KF-----ESRNRMLNVTKWSESM-PCFLNREIISLLSTLGVKDEVFEAMQQQQLIL--LG 669
K+ ++ +R L + S + P LN + + +L KD+ ++ L
Sbjct: 726 KWKCDDADALHRTLEIRSVSTELKPAALNLQFLPVLEDR-AKDKARMRRAIAARLMNDLK 784
Query: 670 KMLINREAA----LDVLQKLNG-VDSKNILVKM----LLQGYEPNVEPYLSMMLLS---H 717
K +++AA L Q +N +S++ V+ L G N LS +L S
Sbjct: 785 KQFDSQKAAVERPLQFRQWVNECTNSRSERVRHGQVPFLGGLPENKGEVLSFLLNSGFDR 844
Query: 718 HENQLSDL-----KSRCR-------IYVPKGRLLIGCFDETGILNYGQVFVRVTMTREEL 765
+ + DL K RC I+V + + D G+L +V V +
Sbjct: 845 RQKYIQDLAFDLQKQRCEVLRTKLNIHVGRSAYMFMVVDFWGVLEENEVHVGFS------ 898
Query: 766 ESKDQSFFHRVDDKTSIV--KGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFP 823
F VDD T ++ VLV ++P P D++ + AV++ +L D I+FP
Sbjct: 899 ----SKFRDDVDDTTYMLLTDCDVLVARSPAHFPSDIQKVRAVFKPQLHA--LKDVIVFP 952
Query: 824 QKGERPHPNECSGGDLDGDIFFISWDNDLIPCET------EPPMDY-------------- 863
KG+ P ++ SGGD DGD+ ++ WD D++ T EP +
Sbjct: 953 AKGDIPLADKLSGGDYDGDMAWVCWDPDIVENFTNADMPKEPDLSAYLGKDKTTFGELVR 1012
Query: 864 -TGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATL 922
TGR H+ + I+K F M + LG I T + + L L+TL
Sbjct: 1013 DTGRTGAAARHEAVYDMINKSFQFAMQPNYLG-ICTNYKERVCYHNNSVSDGVALLLSTL 1071
Query: 923 HSMAVDFAKTG-------------APAEMPLALK-PKEFPDFMEREDKPRYISFGVLGKL 968
VD +K G ++++ P D +PR+I + +
Sbjct: 1072 VGKLVDQSKQGILFDAASWDRLRRERLGGRMSVEDPAYKGDVWAGAGEPRHIVDYLKFAV 1131
Query: 969 YRATLD-------SIMQIRSNAIWSEKIAEASYDHDLEV--DGFEAFLGVAESHKEMYEE 1019
+ T+D +MQ A + A S+D DL V + F+A + S + + E
Sbjct: 1132 AKPTIDRELEELHKVMQASRRAGPDDDAAAHSWDPDLAVYFENFKALTAESRSLRAVLEA 1191
Query: 1020 EMNAL 1024
NAL
Sbjct: 1192 LQNAL 1196
>gi|440633788|gb|ELR03707.1| hypothetical protein GMDG_06341 [Geomyces destructans 20631-21]
Length = 1330
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 89/348 (25%), Positives = 152/348 (43%), Gaps = 54/348 (15%)
Query: 550 VEVTSDGNTYC------FSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVD 603
E+T YC +DG G+IS A +AQK L +TPSAFQ R GG KG+ VD
Sbjct: 647 TEITFVRYDYCSKSGEVMNDGCGQISRKLAHHIAQKLKLDYTPSAFQARIGGAKGMWIVD 706
Query: 604 RNSF---RKLSLRRSMLKFESR-------NRMLNVTKWSESM-PCFLNREIISLL----- 647
F + + S +K+++ +R+ V WS + LN + + +L
Sbjct: 707 VKDFGDKTNIKIYPSQVKWDNNSFFVDPSHRIFEVICWSRPVRSATLNLQFLPILEDRGR 766
Query: 648 -STLGVKDEV---------FEAMQQQQLILLGKMLIN--REAALDVL--QKLNGVDSKNI 693
+ G++D + +E +Q++ + + RE A + KL V +
Sbjct: 767 NNGKGMRDALSRVLENGLTYEISRQREAMDSPQAFRKWVRETAPRITDRNKLGQVGYEAG 826
Query: 694 LVK--------MLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDE 745
L K +L G+ P +L + + + LK + I V + ++ D
Sbjct: 827 LPKSQGEKMNLLLDAGFNPKELCFLRDLAWKANVARGEILKKKLNISVGRSAYMLMVVDF 886
Query: 746 TGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEA 805
GIL +V V + ++ ES D T + +LV ++P + D++ + A
Sbjct: 887 AGILGPREVHVGFSTAFKD-ESTDFC-------DTILSNMDILVARSPAHYTSDIQKVRA 938
Query: 806 VYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI 853
V++ +L D I+F +G+ P E SGGD DGDI ++ W +++
Sbjct: 939 VFKPELSA--LKDVIVFSTRGDFPLAGELSGGDYDGDIAWVCWQTEIV 984
>gi|408399167|gb|EKJ78292.1| hypothetical protein FPSE_01753 [Fusarium pseudograminearum CS3096]
Length = 1388
Score = 83.6 bits (205), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 82/324 (25%), Positives = 138/324 (42%), Gaps = 45/324 (13%)
Query: 563 DGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSFRKL---------SLR 613
DGI ++S AR+V+ GL TP AFQ R G KG+ VD S R
Sbjct: 710 DGIARMSRGLARRVSTHLGLLETPCAFQARIGSAKGMWIVDVEDDGLDDDVWIETYPSQR 769
Query: 614 RSMLKFES-RNRMLNVTKWSESM-PCFLNREIISLLSTL-----------------GVKD 654
+ KFE +R V +WS + LN + I +L G++D
Sbjct: 770 KWECKFEDVHHRTFEVREWSRELKSASLNSQFIPVLEAQAPNPNSMRNVIANHLANGLQD 829
Query: 655 EV---FEAMQQQQLILLGKMLINREAALDVLQKLNGVDS--KNILVKMLLQGYEPNVEPY 709
E+ AM + ++L + + G+ +I+ ML G++ +
Sbjct: 830 EIGGQLAAMTHPTSLRGWTHRGFDRSSLGRVPFVGGLPDHDDDIVSFMLDAGFDATKCRF 889
Query: 710 LSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKD 769
L ++ ++ + Q LK++ I +P+ D TG L G+V + + ++ + + +
Sbjct: 890 LRDLVWNNQKRQAEQLKAKMNIKIPRSAYAFMVVDFTGTLEEGEVQLAFS-SKFQADGES 948
Query: 770 QSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERP 829
+ +D +LV + P DV+ + AV+ L K D I+F KG+ P
Sbjct: 949 DTLLDDID---------ILVARAPAHFVSDVQKVRAVFRPNL--KRLKDVIVFSSKGKSP 997
Query: 830 HPNECSGGDLDGDIFFISWDNDLI 853
+ SGGD DGD ++ WD D++
Sbjct: 998 LADMLSGGDYDGDQAWVCWDPDIV 1021
>gi|380489167|emb|CCF36884.1| RNA-directed RNA polymerase [Colletotrichum higginsianum]
Length = 1354
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 88/328 (26%), Positives = 145/328 (44%), Gaps = 47/328 (14%)
Query: 561 FSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVD---RNSFRKLSLRRSML 617
+DGIG++S S AR+V GLS PSA Q R+G KG+ D + L S
Sbjct: 655 MNDGIGRMSRSLARKVRDVLGLSDVPSAIQGRFGPAKGMWLTDISEEDGKLWLETWPSQR 714
Query: 618 KFES-----RNRMLNVTKWS----------ESMPCFLNREIISLL--STLG--VKDEVFE 658
K++S +R L V + + +P +R I L T+G + DE+
Sbjct: 715 KWDSDFKDPEHRTLEVRSHAMDTKSASLNLQFLPVMEDRAIDKDLMRETIGKNLVDELNR 774
Query: 659 AMQQQ----QLILLGKMLINREAALDVLQKLNG--------VDSKNILVKMLLQ-GYEPN 705
+++Q + LL + +N+ A+ + NG DS + L+ G+EP
Sbjct: 775 EIEEQKNAMKYSLLFRQYVNKGASTRKQRLTNGRIPFLGGLPDSSEERMNFLIDGGFEPQ 834
Query: 706 VEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREEL 765
+ YL + S L + I VP+ L D +L G+V + + ++ +
Sbjct: 835 SQKYLQDLSWSLRRAHCDKLLKKMSIKVPESAYLFMVIDFWNVLEEGEVHLCFS-SKFQT 893
Query: 766 ESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQK 825
++ S H D VLV ++P DV+ ++AV++ +L D I+F K
Sbjct: 894 DTFSDSMLHGCD---------VLVARSPAHFVSDVQRVKAVFKPELHA--IKDVIVFSAK 942
Query: 826 GERPHPNECSGGDLDGDIFFISWDNDLI 853
G P ++ SGGD DGD ++ WD ++
Sbjct: 943 GNVPLADKLSGGDYDGDKAWVCWDPAIV 970
>gi|342876307|gb|EGU77937.1| hypothetical protein FOXB_11547 [Fusarium oxysporum Fo5176]
Length = 821
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 81/337 (24%), Positives = 146/337 (43%), Gaps = 56/337 (16%)
Query: 557 NTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSF----RKLSL 612
N +DGIG+I S R+V GL P+A Q R GG KG+ +D + + R + +
Sbjct: 147 NGTPMNDGIGRIFHSLLREVRDVMGLDFLPTAIQARIGGAKGLWMMDLSPYPSDERWIEI 206
Query: 613 RRSMLKF-----ESRNRMLNVTKWSE-SMPCFLNREIISLLSTLGV-----KDEVFEAMQ 661
S K+ + +R L V S + P LN + I +L + + + E ++
Sbjct: 207 YPSQRKWHCNWSDPAHRTLEVVSVSSYTGPASLNLQFIPILEERAIDRKLMRTTICERIE 266
Query: 662 QQQLILLGKMLINREAALDVLQKL-------------NGVDSKNILVKMLLQ-------- 700
+ + LG N +AA+++ + + D + V L
Sbjct: 267 KHRRNDLG----NAKAAMEIPEVFRKWIHETSFTTFGDSQDGTSWFVGGLPADWPGTMSF 322
Query: 701 ----GYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFV 756
G+EP +L+ M+ +H + + ++++ I + K + D G+L +V +
Sbjct: 323 LADGGFEPRRLDFLNTMMFNHQKQRWKQMETKLHIKIAKSTSALMTIDFQGVLAPNEVQL 382
Query: 757 RVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDY 816
+ ++ + +DD VLV + P P D++ + AV+ K E + +
Sbjct: 383 CFSPAFDDGQ-------QTLDDLGGF---DVLVGRCPAHLPSDIQKVNAVF--KPELRHF 430
Query: 817 VDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI 853
+ IIF G+ P N+ SGGD DGD ++ WD D++
Sbjct: 431 KNVIIFSSLGDEPLANKLSGGDYDGDKAWVCWDADIV 467
>gi|398407389|ref|XP_003855160.1| RNA-directed RNA polymerase [Zymoseptoria tritici IPO323]
gi|339475044|gb|EGP90136.1| RNA-directed RNA polymerase [Zymoseptoria tritici IPO323]
Length = 1316
Score = 83.2 bits (204), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 90/366 (24%), Positives = 157/366 (42%), Gaps = 54/366 (14%)
Query: 561 FSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGV----------IAVDRNSFRKL 610
SDG ++S ++ ++ G HT SAFQ R GG KGV V + +
Sbjct: 601 MSDGCAELSRHAYWKICEQLGGDHTRSAFQARIGGAKGVWYRAAEIDGSFDVGKPPGPHI 660
Query: 611 SLRRSMLKFESRN--------RMLNVTKW-SESMPCFLNREIISLLSTLGVKDEVFEAMQ 661
++ +S +K + + R NV K S + P L+ + +L GV +V +
Sbjct: 661 TIVQSQIKVQRDSLEDCDPDQRKFNVVKANSYARPSLLHAGFMPILLDRGVPRQVMLDVA 720
Query: 662 QQQL---------------ILLGKMLINREAAL---DVLQKLNGVDS--------KNILV 695
+ Q+ L +M ++ + L + G+D+ + ++
Sbjct: 721 RTQIKAEVDACEAAIVSPDPLAFRMWLHSQNELYEERNRTRDGGIDTVAGWPIRREERII 780
Query: 696 KMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRC-RIYVPKGRLLIGCFDETGILNYGQV 754
++L G+ P PYL+ ++ + DLK R +I + + L+G D G L G+V
Sbjct: 781 RLLESGFVPTQCPYLARDVIDLVKYTF-DLKQRNFKIRLGRSTTLMGIADPKGCLEPGEV 839
Query: 755 FVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEK 814
V + + +K+Q F + + G LV +NP + D++ + VY K E K
Sbjct: 840 HVNFSAPFIDPVTKEQ--FQNLS-SPEVAFG--LVARNPAMAAWDIQRVRFVY--KPELK 892
Query: 815 DYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHD 874
D +F +G RP ++ GGD DGD F+I WD L P ++ R + I
Sbjct: 893 HLTDLAVFSSRGHRPLASKLQGGDYDGDTFWICWDRKLATLFKNAPAPWSDREAPIRHSI 952
Query: 875 VTLEEI 880
++E++
Sbjct: 953 PSVEQL 958
>gi|145531992|ref|XP_001451757.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124419423|emb|CAK84360.1| unnamed protein product [Paramecium tetraurelia]
Length = 1257
Score = 82.8 bits (203), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 93/409 (22%), Positives = 183/409 (44%), Gaps = 63/409 (15%)
Query: 466 LQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGW-MGCFNK---IRSVSK 521
L +G I + ++FL ++ +LR+N +WM ++VS +++ + + F + ++ ++
Sbjct: 629 LTEGFTICSEQWKFLGWNNKELRSNIIWM----NKVSNKELDNYILANFKQNSTLQQKAE 684
Query: 522 CAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCG 581
+R F T + + + V + + N FS G+IS + ++ ++
Sbjct: 685 VKSRFRNFFIDGLTT------EFKQLIIVVIRNQINENNFSQ-FGQISRNLIDKI-REIF 736
Query: 582 LSHTPSAFQIRYGGYKGVIAVDRNSFRKLSLRRSMLK-FESRNRMLNVTKWSESMPCFLN 640
++ S ++ + G + ++ ++ N + S K F S N + + +++ FLN
Sbjct: 737 MNQEISVVKVVFNGVQYILQLNNNLKDNIIQLNSQYKIFSSFNDQITIIDYNKYRGAFLN 796
Query: 641 REIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNG----VDSKNILVK 696
R +I L +GVK++VF + L + K I R +LD+ +L G ++ N++ +
Sbjct: 797 RGLIRLFYQMGVKEDVFIQLLNWHLGQISKAFIVRSVSLDLKSELCGLSPIIEQINVMKR 856
Query: 697 MLLQGYEPNV----EPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYG 752
L E N + Y + LL ++ LK + I V K L G D+ GILN G
Sbjct: 857 NYLN--EKNCLFIQKVYEKLKLL-----EIQQLKQKYNILVEKAERLFGVVDQYGILNEG 909
Query: 753 QVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVT------KNPCLHPGDVRVLEAV 806
+V + +D+ ++GK++V + L+ + LE +
Sbjct: 910 EVIC----------------IRKPNDQVQYLEGKLIVVEDCNQDRQKTLNVIGLSRLEVI 953
Query: 807 YEMKLEEK--DYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI 853
+K + +Y++CIIF K + P C+ +F+SWD LI
Sbjct: 954 GRLKNKTAYDEYINCIIFSNKQQNSTP-FCTNT------YFVSWDKRLI 995
>gi|122920829|pdb|2J7N|A Chain A, Structure Of The Rnai Polymerase From Neurospora Crassa
gi|122920830|pdb|2J7N|B Chain B, Structure Of The Rnai Polymerase From Neurospora Crassa
gi|122920831|pdb|2J7O|A Chain A, Structure Of The Rnai Polymerase From Neurospora Crassa
Length = 1022
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 87/360 (24%), Positives = 153/360 (42%), Gaps = 47/360 (13%)
Query: 552 VTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSFRK-- 609
++ G +DG+G++S S A+++ GL PSA Q R+G KG+ +D +
Sbjct: 318 LSPSGTGEVMNDGVGRMSRSVAKRIRDVLGLGDVPSAVQGRFGSAKGMWVIDVDDTGDED 377
Query: 610 -LSLRRSMLKFE-----SRNRMLNV-TKWSESMPCFLNREIISLLSTLG---------VK 653
+ S K+E R L V + SE LN +++ +L +
Sbjct: 378 WIETYPSQRKWECDFVDKHQRTLEVRSVASELKSAGLNLQLLPVLEDRARDKVKMRQAIG 437
Query: 654 DEVFEAMQQQ---QLILLGKMLINREAALDVLQK------------LNGV-DSKNILVKM 697
D + +Q+Q Q L + + R+ + L G+ DS+ +
Sbjct: 438 DRLINDLQRQFSEQKHALNRPVEFRQWVYESYSSRATRVSHGRVPFLAGLPDSQEETLNF 497
Query: 698 LLQ-GYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFV 756
L+ G++P + YL + + + LKS+ I V + + D G+L +V V
Sbjct: 498 LMNSGFDPKKQKYLQDIAWDLQKRKCDTLKSKLNIRVGRSAYIYMIADFWGVLEENEVHV 557
Query: 757 RVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDY 816
+ + +++SF T + VLV ++P P D++ + AV++ +L
Sbjct: 558 GFS---SKFRDEEESF-------TLLSDCDVLVARSPAHFPSDIQRVRAVFKPELHS--L 605
Query: 817 VDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVT 876
D IIF KG+ P + SGGD DGD+ ++ WD +++ M SR + D T
Sbjct: 606 KDVIIFSTKGDVPLAKKLSGGDYDGDMAWVCWDPEIVDGFVNAEMPLEPDLSRYLKKDKT 665
>gi|296417840|ref|XP_002838558.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634502|emb|CAZ82749.1| unnamed protein product [Tuber melanosporum]
Length = 1700
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 99/421 (23%), Positives = 177/421 (42%), Gaps = 86/421 (20%)
Query: 500 EVSAEDVRGWMGCF--NKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGN 557
E+S ED+ W N+ +V K +R+ FS++ + VE++ D++ T+
Sbjct: 976 EMSVEDLLKWHIPLEGNEDVTVPKFWSRISLGFSTAVPSFKFEPSQVEIVRDMKSTT--- 1032
Query: 558 TYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNS-------FRKL 610
+DG +S +++ + L TP+A Q R GG KGV +D + F K+
Sbjct: 1033 GEVMNDGCSVVSPKVMQEIRRILDLHETPTAVQARLGGAKGVWMIDPSIDWSSDEIFIKV 1092
Query: 611 SLRRSMLKF------ESRNRM-LNVTKWS-ESMPCFLNREIISLLSTLGVKDEVFEAMQQ 662
+ S LK+ + RM L++ S E P +N ++I +L GV F+A+++
Sbjct: 1093 T--DSQLKYSGYADDQDWARMTLDILHISHEPRPATINIQLIPILENRGVP---FQALKE 1147
Query: 663 -----------------QQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPN 705
+ + L K + NR + NG+ + G P+
Sbjct: 1148 LTEEHLEEDLDELFQVIDKPVELRKWIYNRGSVGRARISFNGIQ---------VTGSMPS 1198
Query: 706 VEPYLSMMLLSHH-----------------ENQLSDLKSRCRIYVPKGRLLIGCFDETGI 748
+ ++++LL + +LK + I +P L+ D TG
Sbjct: 1199 TKHEMAILLLESGFLVRSCRVLMDHVRVMIDQYCEELKEKLHIRIPHSTTLLCVADPTGT 1258
Query: 749 LNYGQVFVRVTMTREELESKDQSFFH-RVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAV- 806
L G+V +R + F + +T ++ G +LV +NP P D++ ++AV
Sbjct: 1259 LREGEVSLRFS----------NGFLDPKTLRRTQVITGDILVARNPAHIPSDIQKVKAVD 1308
Query: 807 ----YEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMD 862
+ + L E D I+F +G++ + SGGD DGD ++ W+ L+ T P
Sbjct: 1309 IQPYHSLALRE--LQDVIVFSTQGDQSLASLLSGGDYDGDKPWVCWEERLVKPFTNSPTT 1366
Query: 863 Y 863
Y
Sbjct: 1367 Y 1367
>gi|391343490|ref|XP_003746042.1| PREDICTED: uncharacterized protein LOC100901929 [Metaseiulus
occidentalis]
Length = 1356
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 155/689 (22%), Positives = 270/689 (39%), Gaps = 95/689 (13%)
Query: 475 KHYEFLAFSASQLRNNSVWMFA--SNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSS 532
K Y FL S SQ + S W +A D + VR +G + ++ A +F+
Sbjct: 457 KTYYFLGNSKSQAEDFSFWAYAIEKGDTDTISSVRERLGITGNL---ARRIAVQDLVFAE 513
Query: 533 SKQTLVV-PVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHT-PSAFQ 590
+ + + P E DV SD F GIG+IS + R V + C S T SA +
Sbjct: 514 ALGAVSIDPSWVSEESEDVPAASD-----FKHGIGRISEAALRTVVENCHWSRTLCSAIR 568
Query: 591 IRYGGYKGVIAVDRN-SFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLST 649
+ +GG +G + D + ++ R+S +S + L + + SE +R IS LS+
Sbjct: 569 VVHGGRRGTLVYDPSLEGSRIIYRKSQTVIKSEDSTLYLIERSEIKNAAFDRTFISTLSS 628
Query: 650 L--GVKDE---------VFEAMQQQQLILLGKMLINREAALDVLQKL--NGVDSKNILVK 696
G+ +E ++E + + + + R AA VL + G D
Sbjct: 629 KADGLTEEFSVEDFLTPLYELLTEPLSLYSTGARVKRVAAEPVLDHIFREGED------- 681
Query: 697 MLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFV 756
L GY+ + + L DLK + + ++ ++ DE +L G+VF+
Sbjct: 682 --LYGYDKRGDGLFRQAVRCKALKALRDLK-KLKQHMTNAYEIMPVVDELELLEEGEVFI 738
Query: 757 RVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEK-- 814
+V +L ++ G +++ + +H + R + AV +
Sbjct: 739 QVCSPGGDLR---------------VLSGDLVLARKDAMHLEEFRRVTAVNRPDVVGALG 783
Query: 815 DYVDCIIFPQKG-ERPHPNECSGGDLDG--DIFFISWDNDLIPC----ETEPPMDYTGRR 867
+C++ P KG RP G DI I+ D P +PP +
Sbjct: 784 HLFNCVVLPSKGGSRPLEFLAREASYAGESDIILIASHPDEEPAFLFKRNDPPRSTSIAV 843
Query: 868 SRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAV 927
+D +I F +Y+ + AD P A S C+ + +
Sbjct: 844 GPAVDSGC---DIETHFFNYLSYVSFNDFEEVFCALADYLPQHASSESCIRAGAQQRL-L 899
Query: 928 DFAKTGAPAEMPLALKPKEFPDFMER-EDKPRYISFGVLGKLYRATLDSIMQIRSNAIWS 986
D + G PL K +FP F+E+ D Y S L +Y+ + AI +
Sbjct: 900 DKYRRGGREGAPLP-KVVKFPHFLEKISDGKTYCSTRPLAHIYQ---------KGRAIDT 949
Query: 987 EKIAEA-------SYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTG 1039
+ E ++ +L+V+G + F VAE ++ E+ + + S DE+LTG
Sbjct: 950 KYFEETLMMTDDVTFQPELQVEGSQVFAEVAERDMRSFKRELGGIAALHEISV-DEVLTG 1008
Query: 1040 NL-RNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSCK---ENEHPQLASAWYH 1095
+ NR Y + R +++ + L K+L + F + E E Q SA+Y
Sbjct: 1009 TIFSNRGQYSSSERR--SNIEATVKLQVKHLALICRRRFKKGVEKASEVEVLQKISAYYV 1066
Query: 1096 VTYS-PSYCKERMALLSFPWIVGDILLNI 1123
+ P +FPW++ D++ N+
Sbjct: 1067 ASREFPD-----GGGYAFPWMLPDLMRNL 1090
>gi|345568648|gb|EGX51541.1| hypothetical protein AOL_s00054g240 [Arthrobotrys oligospora ATCC
24927]
Length = 1615
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 103/396 (26%), Positives = 168/396 (42%), Gaps = 65/396 (16%)
Query: 509 WMGCFNKIRSVSKCA--ARMGQLFSSSKQTLVVPVQDVEM-IPDV-----EVTSDGN--T 558
W+ K +C AR+ FS++ ++V +++ I D+ E+ DG
Sbjct: 847 WLVPIEKNMDSKQCKLYARIALGFSTTTPSVVFDKNEIDYSIKDIKAKGLELGRDGKLPE 906
Query: 559 YCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGV------IAVDRNSFRKLSL 612
Y +DG G S + R VA++ GL + PSA Q R G KG+ I +D R + +
Sbjct: 907 YSLTDGCGLASPAVFRAVARQLGLPYPPSAVQARIGAAKGLWIMDPSIPLDSEELR-IRI 965
Query: 613 RRSMLKF-----ESRNRMLNVTKWSESM-PCFLNREIISLLSTLGVKDEVFEAMQQQQL- 665
R KF E +R L++ S+ + P LN + I +L GV + E + ++ +
Sbjct: 966 RPDQNKFDGISLEPEHRTLDICNTSKPLKPSALNLQFIVILLHNGVTEATLEQLLREDIR 1025
Query: 666 -----ILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEP-----------NVEPY 709
+ G L + L+++ S+ + ++G P N
Sbjct: 1026 NEVTELFNGGRLDDGAFLRKYLERVKLSGSQRDGRAIAMKGRIPLGLAERAIDLINAGFT 1085
Query: 710 LSMMLLSH-HENQLSD----LKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREE 764
L L E L+D LK + RI +P D +G L GQV++R
Sbjct: 1086 LQNQTLKDWFEKVLTDHCDTLKDKMRIRIPWSCQPYCVPDPSGKLKKGQVYLRFG----- 1140
Query: 765 LESKDQSFFHRVDDKT----SIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCI 820
+S F +D KT +++G VLV +NP D++ + AV +L + D I
Sbjct: 1141 ----PESKF--IDPKTMMAIDVLRGGVLVGRNPAHFASDIQKVTAVDVPEL--RFLTDVI 1192
Query: 821 IFP---QKGERPHPNECSGGDLDGDIFFISWDNDLI 853
+FP + +R + SGGD DGD + WD L+
Sbjct: 1193 VFPADPESNDRSLADYLSGGDYDGDRVWTCWDQRLV 1228
>gi|396489578|ref|XP_003843139.1| similar to RNA-directed RNA polymerase 2 [Leptosphaeria maculans JN3]
gi|312219717|emb|CBX99660.1| similar to RNA-directed RNA polymerase 2 [Leptosphaeria maculans JN3]
Length = 1435
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 94/407 (23%), Positives = 170/407 (41%), Gaps = 84/407 (20%)
Query: 514 NKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDV--EVTSDGNTY------------ 559
N+ +++ K +R+ S + TLV + ++ D+ + T + N +
Sbjct: 688 NQWQNLYKAYSRIALGLSRTIPTLVFKPSQIRLVKDIRSDGTPEANEFNDEGLDWDEKCS 747
Query: 560 ---CFSDGIGKISLSFARQVAQK-CGLSHT----PSAFQIRYGGYKGVIAVDRNSFRK-- 609
+DG +IS+ AR + + C + + PSAFQ R G KG+ V + +
Sbjct: 748 QPQVMNDGCARISVGAARIIWEMYCRATGSDEPLPSAFQGRIRGAKGMWMVSAEAHTRDE 807
Query: 610 ------LSLRRSMLKFESRNRMLNVTKWSESMPCF-------------LNREIISLLSTL 650
+ + S K+E N ++ F L+ I +L
Sbjct: 808 EHNDIWIEISDSQSKYEPHEADKNDATFNSHRLTFNYVKHSHVNGSTDLHISFIPILVDR 867
Query: 651 GVKDEVFEAMQQQQLILLGKMLINREAALDVLQK--------------LNGVD------- 689
GVK +V ++ + + R LD+L + +GV
Sbjct: 868 GVKRDVIADF------IIKHLNVERAQLLDMLSEPVKLHNWVTKQSSATSGVIPWEAALP 921
Query: 690 -SKNILVKMLLQ-GYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETG 747
S++ VK+LL+ G+ P P+L+ +L++ + S ++ + R + L+G D G
Sbjct: 922 VSQSEKVKLLLRAGFTPQDSPFLAKVLINLIRQRQSVMEQKLRAPLGSATFLLGLADPEG 981
Query: 748 ILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKG-KVLVTKNPCLHPGDVRVLEAV 806
+L GQV + ++ + E Q++ H + G +VL+ + P D++ + V
Sbjct: 982 VLEPGQVHISFSLPFVD-EFSRQTYRH--------LDGLEVLIARQPACRRSDIQKVRVV 1032
Query: 807 YEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI 853
KL D I+FP +G+ P + GGD DGDIF+ W+NDL+
Sbjct: 1033 TYSKLAH--LRDVIVFPTRGQYPLAGKLQGGDYDGDIFWTCWENDLV 1077
>gi|340515396|gb|EGR45650.1| predicted protein [Trichoderma reesei QM6a]
Length = 989
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 86/329 (26%), Positives = 145/329 (44%), Gaps = 47/329 (14%)
Query: 560 CFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKG--VIAVDRNSFRK-LSLRRSM 616
+DGIG+IS S A++VA GLS PS FQ R G KG +I VD + R + + S
Sbjct: 293 VMNDGIGRISPSLAKKVADALGLSDCPSCFQGRLGSAKGMWLIDVDSDDERDWVEIYPSQ 352
Query: 617 LKFE-----SRNRMLNVTKW-SESMPCFLNREIISLLSTL-----GVKDEVFEAMQQQQL 665
K+E +R L + W SE LN++ I +L G++ + E +++
Sbjct: 353 TKWECDFDDPHHRTLEIRNWPSELKSASLNQQFIPILEAQSPEPDGMRRVMAEHLERALH 412
Query: 666 ILLG------------KMLINREAALDVLQKLNGV--------DSKNILVKMLL-QGYEP 704
LG ++ I++ + L+G DS V LL G++
Sbjct: 413 ADLGEQVAAMKEPMSLRLWIHQSGPSKNDRLLDGSTKFLAGLPDSNADKVAFLLDSGFDQ 472
Query: 705 NVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREE 764
YL ++ + + LK++ I VP + D T L +V + + T+ +
Sbjct: 473 KKMKYLQDIVWDMCKRKADVLKTKMNITVPCSAYIYMAADFTSTLEEDEVHLSFS-TKFQ 531
Query: 765 LESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQ 824
+ + +D +LV + P P D++ ++ V +L + D IIF
Sbjct: 532 ADGFSDTLLEGMD---------ILVARVPAHLPSDIQRVKVVSRPEL--RKLKDVIIFST 580
Query: 825 KGERPHPNECSGGDLDGDIFFISWDNDLI 853
KG P ++ SGGD DGD+ ++ WD +++
Sbjct: 581 KGGVPLAHKLSGGDYDGDMAWVCWDQNIV 609
>gi|224146916|ref|XP_002336366.1| rna-dependent RNA polymerase [Populus trichocarpa]
gi|222834816|gb|EEE73265.1| rna-dependent RNA polymerase [Populus trichocarpa]
Length = 320
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 96/195 (49%), Gaps = 31/195 (15%)
Query: 671 MLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCR 730
+L N+ AAL V +D NI+ M+ G P EPYL L + + LK +
Sbjct: 14 ILSNKNAALRVALNYGDMDD-NIVATMIGCGI-PLEEPYLQCRLSILMKEEKKSLKGG-K 70
Query: 731 IYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVT 790
I VP+ L+G D TG+L +V + + + + G+VL+
Sbjct: 71 IPVPESYYLMGTADPTGLLESDEVCIILDCGQ--------------------ISGEVLIY 110
Query: 791 KNPCLHPGDVRVLEAVYEMKLEEKDYVD----CIIFPQKGERPHPNECSGGDLDGDIFFI 846
+NP LH GD+ +L+A Y +LE D+V I FP KG R +E SGGD DGD+FF+
Sbjct: 111 RNPGLHFGDIHILKATYVRELE--DFVGNAKYAIFFPCKGPRSLADEMSGGDFDGDMFFV 168
Query: 847 SWDNDLIPC--ETEP 859
S + L+ +TEP
Sbjct: 169 SRNPQLLETFKQTEP 183
>gi|85091735|ref|XP_959047.1| hypothetical protein NCU07534 [Neurospora crassa OR74A]
gi|4803727|emb|CAB42634.1| RNA-dependent RNA polymerase [Neurospora crassa]
gi|28920444|gb|EAA29811.1| predicted protein [Neurospora crassa OR74A]
Length = 1402
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 87/360 (24%), Positives = 153/360 (42%), Gaps = 47/360 (13%)
Query: 552 VTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSFRK-- 609
++ G +DG+G++S S A+++ GL PSA Q R+G KG+ +D +
Sbjct: 698 LSPSGTGEVMNDGVGRMSRSVAKRIRDVLGLGDVPSAVQGRFGSAKGMWVIDVDDTGDED 757
Query: 610 -LSLRRSMLKFE-----SRNRMLNV-TKWSESMPCFLNREIISLLSTLG---------VK 653
+ S K+E R L V + SE LN +++ +L +
Sbjct: 758 WIETYPSQRKWECDFVDKHQRTLEVRSVASELKSAGLNLQLLPVLEDRARDKVKMRQAIG 817
Query: 654 DEVFEAMQQQ---QLILLGKMLINREAALDVLQK------------LNGV-DSKNILVKM 697
D + +Q+Q Q L + + R+ + L G+ DS+ +
Sbjct: 818 DRLINDLQRQFSEQKHALNRPVEFRQWVYESYSSRATRVSHGRVPFLAGLPDSQEETLNF 877
Query: 698 LLQ-GYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFV 756
L+ G++P + YL + + + LKS+ I V + + D G+L +V V
Sbjct: 878 LMNSGFDPKKQKYLQDIAWDLQKRKCDTLKSKLNIRVGRSAYIYMIADFWGVLEENEVHV 937
Query: 757 RVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDY 816
+ + +++SF T + VLV ++P P D++ + AV++ +L
Sbjct: 938 GFS---SKFRDEEESF-------TLLSDCDVLVARSPAHFPSDIQRVRAVFKPELHS--L 985
Query: 817 VDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVT 876
D IIF KG+ P + SGGD DGD+ ++ WD +++ M SR + D T
Sbjct: 986 KDVIIFSTKGDVPLAKKLSGGDYDGDMAWVCWDPEIVDGFVNAEMPLEPDLSRYLKKDKT 1045
>gi|443921571|gb|ELU41160.1| RdRP domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 1096
Score = 80.5 bits (197), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 95/421 (22%), Positives = 174/421 (41%), Gaps = 95/421 (22%)
Query: 514 NKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPD-VEVTSDGNTYCFSDGIGKISLSF 572
N ++++K ++R FS+S+ L+ ++ +P+ V N+ +DG G I+ +
Sbjct: 407 NPYQTLNKWSSRFALGFSTSRPGLMFAPSEIYYLPETVAPGKSSNSAIMTDGAGFINTAA 466
Query: 573 ARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRN-----SFRKLSLRRSMLKFE------- 620
Q+ + S P + Q R+GG KG+ + N + ++ +R S +K +
Sbjct: 467 MNQLTAQMKWSTAPVSVQARFGGSKGLFILHPNDRLLDNPPRIYIRPSQVKVKLHPDPRR 526
Query: 621 --SRNRMLNV-TKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQ--------------- 662
+ +R+L+V T+ + ++ + ++I LS GV + ++M +
Sbjct: 527 WCASHRVLDVLTRNTMAVGTQVTDQVIINLSHNGVPTTILDSMTRTYIESASLIPYVKEG 586
Query: 663 ---------------QQLILLG---KMLINREAALDVLQKLNGVDSKNILVKMLLQGYEP 704
Q+LIL G + + + + + + +D+K G+ P
Sbjct: 587 RFLQLWETIFTRSKVQELILKGLTPESMARAQGFKSIEKGQDLLDAKFTYQPDPYSGHPP 646
Query: 705 NVEPYLSMMLLSHHENQLSDLKSRCR------IYVPKGRLLI-----GCFDETGILNYGQ 753
+ E +L S + + + L +R ++ G++L G D GIL+ G+
Sbjct: 647 SFETQALGLLQSGFDLKFTPLFNRIESIQKMILFGMDGKVLCQLVLNGLVDPLGILDVGE 706
Query: 754 VFVRVTMTREELESKDQSFFHRVDDKT----SIVKGKVLVTKNPCLHPGDVRVLE----- 804
VF F V D + S V G VLV++NPC+ P D+R +
Sbjct: 707 VFC--------------GFGRPVRDNSGTDISTVLGPVLVSRNPCILPSDMRKVSTEGIC 752
Query: 805 ------------AVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDL 852
AV +L Y D I+F KGER + +GGD DGD + W+ L
Sbjct: 753 GEIRAYSCSQVIAVECPELWAAGYTDVIVFSVKGERSLASMLAGGDYDGDTAILIWEEAL 812
Query: 853 I 853
+
Sbjct: 813 V 813
>gi|238599737|ref|XP_002394960.1| hypothetical protein MPER_05070 [Moniliophthora perniciosa FA553]
gi|215464849|gb|EEB95890.1| hypothetical protein MPER_05070 [Moniliophthora perniciosa FA553]
Length = 346
Score = 80.5 bits (197), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 95/203 (46%), Gaps = 38/203 (18%)
Query: 387 MSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQ 446
+CY TP ++ GP S+ +++ + + F+RV F EED +K +
Sbjct: 153 FNCYHVTFTPTRMITEGPYPTQSHRIIRRYKGFEDHFIRVDFCEEDRTKYGDD------- 205
Query: 447 RGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDE-----V 501
R + S P+ + R+ IL+ G +G +H++FLA+S S LR++SVW + V
Sbjct: 206 REVDSIPF---LKGRVGNILKRGFPLGGRHFQFLAYSGSGLRSHSVWFMSEFHHPLEGLV 262
Query: 502 SAEDVRGWMGCFNK--------------------IRSVSKCAARMGQLFSSSKQTLVVPV 541
+A +R +G F +R SK AR+G F++++ ++ +
Sbjct: 263 NAAKIRDSIGDFRDLRIEEYPEQERRFYQADQDLLRHPSKYGARLGLAFTATRPSVRIRR 322
Query: 542 QDVEMIPDVEVTSDGNTYCFSDG 564
+++PD+E + F+DG
Sbjct: 323 DQWDIVPDIE---GDKSRLFTDG 342
>gi|336470141|gb|EGO58303.1| hypothetical protein NEUTE1DRAFT_82729 [Neurospora tetrasperma FGSC
2508]
gi|350290166|gb|EGZ71380.1| RNA-dependent RNA polymerase [Neurospora tetrasperma FGSC 2509]
Length = 1402
Score = 80.1 bits (196), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 87/360 (24%), Positives = 152/360 (42%), Gaps = 47/360 (13%)
Query: 552 VTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSFRK-- 609
++ G +DG+G++S S A+++ GL PSA Q R+G KG+ +D +
Sbjct: 698 LSPSGTGEVMNDGVGRMSRSVAKRIRDVLGLGDVPSAVQGRFGSAKGMWVIDVDDTGDED 757
Query: 610 -LSLRRSMLKFE-----SRNRMLNV-TKWSESMPCFLNREIISLLSTLG---------VK 653
+ S K+E R L V + SE LN +++ +L +
Sbjct: 758 WIETYPSQRKWECDFVDKHQRTLEVRSVASELKSAGLNLQLLPVLEDRARDKVKMRQAIG 817
Query: 654 DEVFEAMQQQ---QLILLGKMLINREAALDVLQK------------LNGV-DSKNILVKM 697
D + +Q+Q Q L + + R+ + L G+ DS+ +
Sbjct: 818 DRLINDLQRQFSEQKHALNRPVEFRQWVYESYSSRATRVSHGRVPFLAGLPDSQEETLNF 877
Query: 698 LLQ-GYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFV 756
L+ G++P + YL + + + LKS+ I V + + D G+L +V V
Sbjct: 878 LMNSGFDPKKQKYLQDIAWDLQKRKCDTLKSKLNIRVGRSAYIYMIADFWGVLEENEVHV 937
Query: 757 RVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDY 816
+ + +++SF T + VLV ++P P D++ + AV++ +L
Sbjct: 938 GFS---SKFRDEEESF-------TLLSDCDVLVARSPAHFPSDIQRVRAVFKPELHS--L 985
Query: 817 VDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVT 876
D IIF KG+ P + SGGD DGD+ ++ WD ++ M SR + D T
Sbjct: 986 KDVIIFSTKGDVPLAKKLSGGDYDGDMAWVCWDPAIVDGFVNAEMPLEPDLSRYLKKDKT 1045
>gi|336378305|gb|EGO19463.1| hypothetical protein SERLADRAFT_442939 [Serpula lacrymans var.
lacrymans S7.9]
Length = 733
Score = 80.1 bits (196), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 126/491 (25%), Positives = 188/491 (38%), Gaps = 132/491 (26%)
Query: 531 SSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQV-------AQKCGLS 583
+ + ++ + V ++ I D ++ GN +DG G IS++ +V + +
Sbjct: 102 TGTDPSVTLEVHEISQIDD-RISPVGNV--MTDGCGTISVALCNEVWSSLRNRKKHKHVK 158
Query: 584 HTPSAFQIRYGGYKGVIAVD-RNSFRKLSLRRSMLKFESRN-RMLNV-TKWSESMPCFLN 640
+ PSA+Q R GG KGV+ D R + LR S KF++ R L++ + S+ FLN
Sbjct: 159 NVPSAYQFRIGGAKGVLVQDPRLEGNVVCLRPSQTKFDAPGIRTLDIQSTSSQPKAMFLN 218
Query: 641 REIISLLSTLGVKDEVFEAMQQQQL-------------------------ILLGKMLINR 675
R +I LL LG A+Q + L + N
Sbjct: 219 RPLIVLLEYLGTDSNHIIALQNNAISEAQTAHNSFLDASKMFQKNNFGASFRLPSLFHNL 278
Query: 676 EAALDVLQK-----LNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCR 730
LD+ L K+ LV LLQ V Y L +LK R
Sbjct: 279 ATLLDIHPGDSSLGLVSTSWKHDLVAKLLQC----VSTY-----------ALRELKYRAH 323
Query: 731 IYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSI---VKGKV 787
I VP L+G D++T + ++G+V
Sbjct: 324 IAVPGSYTLLG-----------------------------------DERTGLYKSIEGRV 348
Query: 788 LVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFIS 847
L+T++ +HPGDV+V+ AV +L + ++F KG R + GG L GD F +
Sbjct: 349 LITRSAQIHPGDVQVVTAVRHPELSH--LTNVVVFSCKGNRSLASCLGGGGLAGDDFNLL 406
Query: 848 WDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRD 907
D L P + P Y I T+ S + + +D
Sbjct: 407 LDESLFPKKVAKPGTYDS---------------------LPIKKTINPCSASDIADV-KD 444
Query: 908 PDKARSSKCLHLATLHSMAVDFAKTGAPAEMP--LALKPKEFPDFME------REDKPRY 959
P S+CL LA S AVDF KTG+P M L PDF+ R D+ Y
Sbjct: 445 PG---CSECLQLAQYASHAVDFPKTGSPVRMKDLPQLSGLSKPDFLAPEGANIRSDQ-YY 500
Query: 960 ISFGVLGKLYR 970
S +LG L+R
Sbjct: 501 FSPKLLGVLHR 511
>gi|212534570|ref|XP_002147441.1| RNA-directed RNA polymerase, putative [Talaromyces marneffei ATCC
18224]
gi|210069840|gb|EEA23930.1| RNA-directed RNA polymerase, putative [Talaromyces marneffei ATCC
18224]
Length = 1361
Score = 80.1 bits (196), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 112/479 (23%), Positives = 194/479 (40%), Gaps = 71/479 (14%)
Query: 509 WMGCFNKIRSVSKCA--ARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIG 566
W + RS + C R+G S + T+V+ ++++ +DG
Sbjct: 622 WHIPLDANRSQTDCKLFNRIGLALSKTWATVVIQPHQF-----LKLSDPLGKPVMNDGCA 676
Query: 567 KISLSFARQVAQKCGLSH-TPSAFQIRYGGYKGVIAVDRN-----------SFRKLSLRR 614
+S AR + + G+ TPS FQ R G KG+ VDR+ S +L ++
Sbjct: 677 LMSRPLARAICAELGIDGITPSTFQGRIAGAKGLWMVDRDLDDDKGFWIQISDSQLKVKP 736
Query: 615 SMLKF----ESRNRMLNVTKWSESM-PCFLNREIISLLSTLG-------------VKD-- 654
F + V WS+ + LN +++ +L+ G ++D
Sbjct: 737 HPCDFFGHVDEEKITFEVASWSKPLRSSELNTQLLEVLNNRGQVRKRVADIAREAIRDIY 796
Query: 655 EVFEAMQQQQLILLGKMLIN--REAALDVLQKLN--GVD---SKNI--LVKMLLQGYEPN 705
+ FE + ++ I L + LI R A D + N +D S+ I +++ L G+ P
Sbjct: 797 KEFENVMERNSIPLARALIQKIRPTADDGYSRTNIRRIDQWLSQTIESVIRFLEAGFSPR 856
Query: 706 VEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREEL 765
P L + + L+ + I +P D G+L +V +
Sbjct: 857 DFPPLRERMRICLNDTLNRYVNELHIPIPLSTYAYCIADPYGVLEENEVHFAFSG----- 911
Query: 766 ESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQK 825
+ +D S+F D + VLV + P P D++ AV++ +L + + D I+F +
Sbjct: 912 QWRDCSYF----DDAMVDGADVLVGRTPAHCPWDIQRRRAVWKSEL--RHFKDVIVFSTR 965
Query: 826 GERPHPNECSGGDLDGDIFFISWDNDLIP--CETEPPMDYTGRRS-RIMDHDVTLEEIHK 882
G P + SGGD DGD +I WD ++ T PP++ +G ++ H + +
Sbjct: 966 GTTPLASLLSGGDYDGDRPWICWDQGIVETFTNTFPPLEESGPEHFGLVKHAQPMSTVGS 1025
Query: 883 FFVDYMIN--------DTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTG 933
D++ N LG + H + + + S L LATL S VD K+G
Sbjct: 1026 -VGDFLRNAFKFNLAMSNLGRCTVEHEKLSYDEKEGISSPLSLELATLLSHLVDSKKSG 1083
>gi|388853529|emb|CCF52928.1| uncharacterized protein [Ustilago hordei]
Length = 1363
Score = 80.1 bits (196), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 78/158 (49%), Gaps = 9/158 (5%)
Query: 696 KMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVF 755
+MLL G+ P PYL+ +L+ +N + + R I VP+ + D TG L G++
Sbjct: 778 EMLLVGFHPKSCPYLAELLVEIADNAMKRIIKRFTIPVPRSAEAMVMPDPTGTLEEGEIQ 837
Query: 756 VRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKD 815
R + R H + +G VLVT++PCL P D+R + AV ++ E
Sbjct: 838 FRFSGDRLLDPETRLKLNH-------VPEGDVLVTRHPCLLPTDIRKVRAV--VRPELST 888
Query: 816 YVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI 853
Y D ++F KG+ P + GGD DGD + W+ L+
Sbjct: 889 YEDVVVFSIKGQGPLASLLGGGDHDGDTIRVFWEPKLV 926
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 60/264 (22%), Positives = 102/264 (38%), Gaps = 51/264 (19%)
Query: 492 VWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMI---P 548
+W F + + AE+ R +G K R+ S+S VP ++ I P
Sbjct: 501 IWDFIDHHQPFAENGRSPLG---------KYIQRVQLGLSTS-----VPASVIDKITYEP 546
Query: 549 DVEVTSD---GNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRN 605
DV D G +DG G +SL+ A+ +A+ G P AFQ R G KGV ++
Sbjct: 547 DVFGDPDPVTGKRVEMTDGAGVVSLAVAKDIAEHLGYESVPCAFQGRVAGSKGVWYIEPR 606
Query: 606 SFRKLSLRRSMLKFESRNRMLNVTKWSES------------------MPCFLNREIISLL 647
R L + R+ + + P L+++II ++
Sbjct: 607 PERSLPGEKPTRWIRVRDSQKKINYADDKPLDPSQLVIDLLGPSRTFAPSTLSKQIIMVI 666
Query: 648 STLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNIL-VKMLLQGY--EP 704
GV FE MQ+ +L A +D + +G D+ + + +++ Y
Sbjct: 667 QANGVPTSTFEGMQEAEL----------RAIIDEISNWDGPDATVCMRLATVVEKYCKTE 716
Query: 705 NVEPYLSMMLLSHHENQLSDLKSR 728
+++ S H +SDLK +
Sbjct: 717 SMKAKRSTESAEHRAQGMSDLKGK 740
>gi|46124253|ref|XP_386680.1| hypothetical protein FG06504.1 [Gibberella zeae PH-1]
Length = 1372
Score = 79.7 bits (195), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 80/324 (24%), Positives = 138/324 (42%), Gaps = 45/324 (13%)
Query: 563 DGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSFRKL---------SLR 613
DGI ++S AR+V+ GL TP AFQ R G KG+ VD S R
Sbjct: 694 DGIARMSRGLARRVSIHLGLLETPCAFQARIGSAKGMWIVDVEDDGLDDDVWIETYPSQR 753
Query: 614 RSMLKFES-RNRMLNVTKWSESM-PCFLNREIISLLSTL-----------------GVKD 654
+ +FE +R V +WS + LN + I +L G++D
Sbjct: 754 KWECEFEDVHHRTFEVREWSRELKSASLNTQFIPVLEAQAPNPNSMRNVIANHLANGLQD 813
Query: 655 EV---FEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKN--ILVKMLLQGYEPNVEPY 709
++ AM + ++L + + G+ + I+ ML G++ +
Sbjct: 814 DIGGQLAAMTHPTSLRGWTHRGFDRSSLGRVPFVGGLPDHDDDIVSFMLDAGFDATKCRF 873
Query: 710 LSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKD 769
L ++ ++ + Q LK++ I +P+ D TG L G+V + + ++ + + +
Sbjct: 874 LRDLVWNNQKRQAEQLKAKMNIKIPRSAYAFMVVDFTGTLEEGEVQLAFS-SKFQADGES 932
Query: 770 QSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERP 829
+ +D +LV + P DV+ + AV+ L K D I+F KG+ P
Sbjct: 933 DTLLDDID---------ILVARAPAHFVSDVQKVRAVFRPNL--KRLKDVIVFSSKGKSP 981
Query: 830 HPNECSGGDLDGDIFFISWDNDLI 853
+ SGGD DGD ++ WD D++
Sbjct: 982 LADMLSGGDYDGDQAWVCWDPDIV 1005
>gi|405952890|gb|EKC20647.1| Putative RNA-dependent RNA polymerase 2 [Crassostrea gigas]
Length = 266
Score = 79.3 bits (194), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 67/111 (60%), Gaps = 3/111 (2%)
Query: 575 QVAQKCGLSHTPSAFQIRYGGYKGVIAVDR---NSFRKLSLRRSMLKFESRNRMLNVTKW 631
QVA K + PSAFQIR+GG KG++A D N L +R+SM KFES++ L +
Sbjct: 125 QVADKLQIHPVPSAFQIRFGGCKGMVAQDPTLGNDTDILVIRKSMKKFESKSNNLEILDV 184
Query: 632 SESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVL 682
+ +LN+++I+LLS LG++D VF +Q+ L+ + +L+ AL L
Sbjct: 185 TGPGRLYLNKQVITLLSGLGIQDHVFLNLQENMLVDIADILLYDHLALPAL 235
>gi|46117554|ref|XP_384795.1| hypothetical protein FG04619.1 [Gibberella zeae PH-1]
Length = 1079
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 82/333 (24%), Positives = 144/333 (43%), Gaps = 59/333 (17%)
Query: 561 FSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVD---RNSFRKLSLRRSML 617
+DGIG++SL+ R+V L + P+A Q R G KG+ +D + S L S
Sbjct: 397 MNDGIGRVSLALMRKVQNALQLDYLPAAIQGRIGSAKGLWVLDIGTQPSEIWLETYESQR 456
Query: 618 KF-----ESRNRMLNVTKWSESM-PCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKM 671
K+ + +R L V S + LN + IS+L + V + + ++ M
Sbjct: 457 KWNCDWKDPEHRTLEVLSQSSDLKTATLNHQFISILESRSVD------RRNTRAAMVKHM 510
Query: 672 LINREAALDVLQKL------------------NGVDSKNILVKMLLQ------------G 701
IN + +LD ++ G +++ + L + G
Sbjct: 511 KINLQTSLDHAKESMKQPELFRKWIHETSYASYGGRNESWFIGGLPKSWAEQMSFLSDGG 570
Query: 702 YEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMT 761
+EP YL + +H E+Q + K + RI + + + D G+L +V + +
Sbjct: 571 FEPLHLRYLHNLTTNHMESQWKNTKEKMRIEISQSTWALMVVDFQGVLGPDEVQLCFS-- 628
Query: 762 REELESKDQSFFHRVDDKTSIVKG-KVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCI 820
S F+ +K ++G V+V + P P D++ ++AV+ K E + D +
Sbjct: 629 ---------SPFNDGFEKRYDLEGFDVIVARCPAHLPSDIQKVKAVF--KPELRHLKDVV 677
Query: 821 IFPQKGERPHPNECSGGDLDGDIFFISWDNDLI 853
+FP G+ P + SGGD DGD +I WD D++
Sbjct: 678 VFPFVGQEPLAGKLSGGDYDGDKAWICWDADIV 710
>gi|159126570|gb|EDP51686.1| RNA-directed RNA polymerase, putative [Aspergillus fumigatus A1163]
Length = 1318
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 114/495 (23%), Positives = 196/495 (39%), Gaps = 87/495 (17%)
Query: 557 NTYCFSDGIGKISLSFARQVAQKCGLS-HTPSAFQIRYGGYKGVIAVDRNSFRK------ 609
N +DG +S A + + G++ +TPSAFQ R G KG+ VDR++
Sbjct: 633 NRPVMNDGCALMSRPLANAICDQLGITGNTPSAFQGRIAGAKGLWMVDRHNSGISGGGDD 692
Query: 610 --LSLRRSMLKFESRNR-----------MLNVTKWSESM-PCFLNREIISLLSTLG-VKD 654
+ + S LK + + V KWS+ + P LN +++++L G V++
Sbjct: 693 FWIQISDSQLKIQPHPQAWRGPVDDEKLTFEVVKWSKPLHPVELNTQLLAILEHGGQVRE 752
Query: 655 EVFEAMQQQQLIL---LGKMLINREAAL--DVLQK--------LNGVDSK---------- 691
+ E + + +L + AAL ++QK L+G++ +
Sbjct: 753 HIAELTRAGIRAISQDFASVLESNSAALCRSLIQKIKPMADDGLSGINQRMKRLEQWTAN 812
Query: 692 --NILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGIL 749
++++ G+ P L L + L I VP D G+L
Sbjct: 813 DAEAIIRLTEAGFAPRSFYPLRRRLGRCLRDLLDRYVDELHIEVPLSTYAFCIADPYGVL 872
Query: 750 NYGQVFVRVTMTREELESK-DQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYE 808
+V + ++ + + + VD VLV + P P D++ AV++
Sbjct: 873 KEDEVHFGFSNNWRDVRGQFEDNLLDGVD---------VLVGRLPAHVPSDIQRRRAVWK 923
Query: 809 MKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI--------PCETEPP 860
+L + + D I+FP G+ P + SGGD DGD +I WD +++ P E PP
Sbjct: 924 TEL--RHFKDVIVFPTTGDIPLAHMLSGGDYDGDTPWICWDQNIVQRFQNSDLPTEEYPP 981
Query: 861 MDYTGRRSRIMDHDV--TLEEIHKFFVDYMINDTLGAISTAH-LVHADRDPDKARSSKCL 917
+ + + D+ T E + F + LG + H + D D AR+ +
Sbjct: 982 EHFGLTKHSVSMRDIQSTDEFLQSAFTFNLTTSNLGRCTVEHEKIAYDESIDSARAKE-- 1039
Query: 918 HLATLHSMAVDFAKTGA--------PAEMPLALKPKEFPDFMEREDKPR------YISFG 963
LA L S VD K G ++ K +E P + KP+ Y+ F
Sbjct: 1040 -LACLLSHLVDGRKGGVHLSEQAWQQYRKKVSPKAREVPAYKNAGRKPKKTSIIDYLKFE 1098
Query: 964 VLGKLYRATLDSIMQ 978
V K A L+ + +
Sbjct: 1099 VARKERHAVLEDLQR 1113
>gi|119479435|ref|XP_001259746.1| RNA-directed RNA polymerase, putative [Neosartorya fischeri NRRL 181]
gi|119407900|gb|EAW17849.1| RNA-directed RNA polymerase, putative [Neosartorya fischeri NRRL 181]
Length = 1338
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 116/495 (23%), Positives = 191/495 (38%), Gaps = 87/495 (17%)
Query: 557 NTYCFSDGIGKISLSFARQVAQKCGLS-HTPSAFQIRYGGYKGVIAVDRNSFRK------ 609
N +DG +S A + + G++ +TPSAFQ R G KG+ VDR++
Sbjct: 653 NRPVMNDGCALMSRRLANAICDQLGITGNTPSAFQGRIAGAKGLWMVDRHNSGISGGGDD 712
Query: 610 --LSLRRSMLKFESRNR-----------MLNVTKWSESM-PCFLNREIISLLSTLGVKDE 655
+ + S LK + + V KWS+ + P LN +++++L G E
Sbjct: 713 FWIQISDSQLKIQPHPQAWREPIDDEKLTFEVVKWSKPLHPVELNTQLLAILEHGGQVRE 772
Query: 656 VFEAMQQQQLILLGK----MLINREAAL--DVLQKL-----NGVDSKNILVKMLLQGYEP 704
+ + + + + +L + AAL ++QK+ +G + +K L Q
Sbjct: 773 YIAELTRAGIRAISQDFASVLESNSAALCRSLIQKIKPMADDGSSGMSQRMKRLEQWTAN 832
Query: 705 NVEPYLSMMLLSHHENQLSDLKSR---------------CRIYVPKGRLLIGCFDETGIL 749
+ E + + L+ R I VP D G+L
Sbjct: 833 DAEAIIRLTEAGFALRSFYPLRKRLGRCLRDLLDRYADELHIEVPLSTYAFCIADPYGVL 892
Query: 750 NYGQVFVRVTMT-REELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYE 808
+V + R+ + + VD VLV + P P D++ AV+
Sbjct: 893 KEDEVHFGFSNNWRDARGQFEDNLLDGVD---------VLVGRLPAHVPSDIQRRRAVW- 942
Query: 809 MKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI--------PCETEPP 860
K E + + D I+FP G+ P + SGGD DGD +I WD +++ P E PP
Sbjct: 943 -KPELRHFKDVIVFPTTGDIPLAHMLSGGDYDGDTPWICWDQNIVQRFQNSDLPTEEYPP 1001
Query: 861 MDY--TGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAH-LVHADRDPDKARSSKCL 917
+ T + D + T E + F + LG + H + D D AR+ +
Sbjct: 1002 EHFGLTKHSVSMRDIESTDEFLQSAFTFNLTTSNLGRCTLEHEKIAYDESIDSARAKE-- 1059
Query: 918 HLATLHSMAVDFAKTGA--------PAEMPLALKPKEFPDFMEREDKPR------YISFG 963
LA L S VD K G ++ K +E P + KP+ Y+ F
Sbjct: 1060 -LACLLSHLVDGRKGGVHLSEQAWQQYRKKISPKAREVPAYKNAGRKPKKTNIIDYLKFE 1118
Query: 964 VLGKLYRATLDSIMQ 978
V K A L+ + +
Sbjct: 1119 VARKERHAVLEDLQR 1133
>gi|226287106|gb|EEH42619.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
Length = 1366
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 91/393 (23%), Positives = 153/393 (38%), Gaps = 89/393 (22%)
Query: 517 RSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQV 576
+S K R+ S + T+V+ ++V PD +DG +S S ++
Sbjct: 648 QSDCKLFQRLALGLSRTLSTVVLRREEVIFCPDPPGP------VMNDGCALMSRSLGLEI 701
Query: 577 AQKCGLSHTPSAFQIRYGGYKGVIAVDRNSFR--------KLSLRRSMLKF--------- 619
+ L P+ +Q R G KG+ VDR+ R L + S LK
Sbjct: 702 KRILDLETLPACYQGRISGAKGIWMVDRDDSRFKGGDRDFGLEITESQLKISYPHGPPHN 761
Query: 620 -----ESRNRMLNVTKWSESM-PCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLI 673
++ V +WS+ + P LN +++ +L GV + + QQ++ + K
Sbjct: 762 PRLVADNTQLTFEVVQWSQPLNPSSLNLQVLKVLQHGGVGHSHIKKLIQQEVSIFYKEF- 820
Query: 674 NREAALDVLQKLNGVDSKNILVKM--------------------------------LLQG 701
L V+ NGV + L KM L G
Sbjct: 821 -----LKVIHLSNGVACRKWLQKMKRFGDDGYSYKRQTRRIDNFFPSQYVEQAVLLLDSG 875
Query: 702 YEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMT 761
+ P PYL+ + ++ L L+ + ++ V + D G+L+ +V
Sbjct: 876 FLPLKLPYLTQLFRRILKDYLDSLR-KLKVSVSQSTYAYCIADPLGVLSPDEVHF----- 929
Query: 762 REELESKDQSFFHRVDDKTSIVKGK-----VLVTKNPCLHPGDVRVLEAVYEMKLEEKDY 816
F H+ DD + +V + VLV + P P D++ AVY+ +L + +
Sbjct: 930 ---------GFSHKWDDGSVVVGTELHDMNVLVARLPAHLPTDIQKRRAVYKNEL--RHF 978
Query: 817 VDCIIFPQKGERPHPNECSGGDLDGDIFFISWD 849
D I+FP G+ P + SGGD DGD ++ WD
Sbjct: 979 KDVIVFPTTGDVPLASLLSGGDYDGDQCWVCWD 1011
>gi|336268466|ref|XP_003348998.1| hypothetical protein SMAC_02019 [Sordaria macrospora k-hell]
gi|380094257|emb|CCC08474.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1403
Score = 78.2 bits (191), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 83/360 (23%), Positives = 149/360 (41%), Gaps = 47/360 (13%)
Query: 552 VTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSFRK-- 609
++ G +DG+G++S S A+++ GL PSA Q R+G KG+ +D N
Sbjct: 699 LSPSGTDEVMNDGVGRMSRSVAKKIRDVLGLGDVPSAVQGRFGSAKGMWVIDVNDMGDDD 758
Query: 610 -LSLRRSMLKFE-----SRNRMLNVTKWSESM----------PCFLNREIISLLSTLGVK 653
+ S K+E R L V + + P +R + + +
Sbjct: 759 WIETYPSQRKWECDFVDKHQRTLEVRSVASELKSAGLNLQLLPVLEDRAMDKVKMRQAIG 818
Query: 654 DEVFEAMQQQ---QLILLGKMLINREAALDVLQK------------LNGV-DSKNILVKM 697
D + +Q+Q Q L + + R+ + L G+ DS+ +
Sbjct: 819 DRLVNDLQRQFSEQKHALNRPVEFRQWVYESYSTRATRVSHGRVPFLAGLPDSQEETLNY 878
Query: 698 LLQ-GYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFV 756
L+ G++P + +L + + + LKS+ I V + + D +L +V V
Sbjct: 879 LMNSGFDPKKQKFLQDIAWDLQKRKCDTLKSKLNIRVGRSAYIYMIADFWDVLEENEVHV 938
Query: 757 RVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDY 816
+ + +++SF T + VLV ++P P D++ + AV++ +L
Sbjct: 939 GFS---SKFRDEEESF-------TLLSDCDVLVARSPAHFPSDIQRVRAVFKPELHM--L 986
Query: 817 VDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVT 876
D IIF KG+ P + SGGD DGD+ ++ WD +++ M SR + D T
Sbjct: 987 KDVIIFSTKGDIPLAKKLSGGDYDGDMAWVCWDPEIVAGFVNAEMPLEPDLSRYLRKDKT 1046
>gi|402577566|gb|EJW71522.1| hypothetical protein WUBG_17571 [Wuchereria bancrofti]
Length = 89
Score = 77.8 bits (190), Expect = 3e-11, Method: Composition-based stats.
Identities = 44/101 (43%), Positives = 58/101 (57%), Gaps = 15/101 (14%)
Query: 739 LIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKT---SIVKGKVLVTKNPCL 795
+ G DETG+L YGQVFV+ T F + K +IVKG VL+TKNP +
Sbjct: 1 MFGILDETGLLQYGQVFVQFT----------NDVFLKTPPKAAAKTIVKGFVLITKNPSI 50
Query: 796 HPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSG 836
GDVR+ EAV +L + VD ++FPQ G RPH +E +G
Sbjct: 51 VAGDVRIFEAVDLPEL--RHLVDVVVFPQHGPRPHTDEMAG 89
>gi|242215346|ref|XP_002473489.1| predicted protein [Postia placenta Mad-698-R]
gi|220727390|gb|EED81310.1| predicted protein [Postia placenta Mad-698-R]
Length = 1162
Score = 77.8 bits (190), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 97/432 (22%), Positives = 176/432 (40%), Gaps = 98/432 (22%)
Query: 381 LIDHN-----VMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSK 435
L DH +C TP ++ GP SN V++ + + F+RV F++E+ S+
Sbjct: 332 LFDHRNPKSVFFACQHVTFTPTRMILEGPTRVQSNSVIRKYWPHRDHFIRVDFLDENLSQ 391
Query: 436 LPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMF 495
R + + ++ + +L+ G + +++ S Q +V M
Sbjct: 392 Y-------RFDREVDGPAF---LHDHVGKVLKGGFEVAGSPFDYSPDSEMQ---PAVRM- 437
Query: 496 ASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSD 555
+A+ +RG +G ++I+ +K AAR+GQ F+S+ ++ + E I ++ +
Sbjct: 438 ------TADRIRGALGDLSEIKIPAKYAARIGQAFTSTMCSMPISRDQWEEIDEIWEDRE 491
Query: 556 GNTYCFSDGIGKISLSFARQVAQ-KCGL-------SHTPSAFQIRYGG------------ 595
N +DG+G++S + ++ C L PSA Q R+ G
Sbjct: 492 -NPRSHTDGVGRLSQALMDRIWDIVCNLYPDYGVYGVKPSAVQFRFLGKSFNTIVQKITH 550
Query: 596 ------YKGVIAVDRN-SFRKLSLRRSMLKFE-----------------SRNRMLNVTKW 631
YKGV+AVD S ++ R M KF+ ++ L++
Sbjct: 551 SSSPLGYKGVLAVDPQLSGERICFRPEMRKFKPLICPYCREGNLDFCPHENDQNLHIADI 610
Query: 632 SESMP-CFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDS 690
+S +L R+++S+L GV + F +QQ+ + + + +D+LQ +
Sbjct: 611 FDSPKRAYLTRDLVSILEDRGVHLKAFMDLQQEAKMKTYQARDSVTQFMDILQTHH---- 666
Query: 691 KNILVKMLLQGYEPNVEPYLSMMLLSHHENQ-----------------LSDLKSRCRIYV 733
M Q P + L + + NQ L D+K+R RI V
Sbjct: 667 ------MGFQFRLPRLLERLDSLGVDATRNQEADDFTRRVREHAIQHVLCDMKNRARIPV 720
Query: 734 PKGRLLIGCFDE 745
P+ LL+G DE
Sbjct: 721 PRSYLLVGVADE 732
Score = 42.7 bits (99), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 58/140 (41%), Gaps = 29/140 (20%)
Query: 842 DIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHL 901
D++++ L+P P Y + D T ++ F +YM +D L
Sbjct: 858 DLYYVFQYYQLLPTIHIAPASYNDIKPPGRPFDWT--DVCDFITEYMHSDAL-------- 907
Query: 902 VHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEF----PDFMERED-- 955
H DP +C+ LA L S AVD+ KTG P +M A P + PD+ ED
Sbjct: 908 -HGSHDP------RCMRLAELCSDAVDYPKTGRPVDMRTA--PGKLMQYNPDWYADEDTN 958
Query: 956 ----KPRYISFGVLGKLYRA 971
Y S VLG LYR
Sbjct: 959 ANPLADSYQSDRVLGHLYRG 978
>gi|326475512|gb|EGD99521.1| hypothetical protein TESG_06788 [Trichophyton tonsurans CBS 112818]
Length = 1298
Score = 77.8 bits (190), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 108/469 (23%), Positives = 174/469 (37%), Gaps = 91/469 (19%)
Query: 533 SKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIR 592
S+ T + ++ E I D D SDG +S S R +A LS P+ FQ R
Sbjct: 604 SRTTATITLRPEEFIYD----DDPRQEKMSDGFAMMSRSLGRAIADSICLSKVPTCFQGR 659
Query: 593 YGGYKGVIAVDRN-------SFRKLSLRR-------------------SMLKFESRNRML 626
G KGV V ++ R R + L F+
Sbjct: 660 IAGAKGVWVVAKDDQDIHVKGLRHFETERGYWLVINASQLKVQPPPCDTSLMFDKHQLTF 719
Query: 627 NVTKWSES-MPCFLNREIISLLSTLGVKDE-VFEAMQQQQLILLGKMLI---NREAALDV 681
+V+ +S+ P LN + + +L G E + + ++ + L+ AA
Sbjct: 720 DVSSYSQPPQPVHLNTQFLMVLQDRGTNKEYILSLIPEEADKFYSEFLLVQNGDSAACRA 779
Query: 682 LQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLS-------------HHENQLSDLKSR 728
+ NG D+ + + + + P+ L+M L + EN L +
Sbjct: 780 WVRQNGGDASSQIPALNESTFPPSRTVQLNMFLDAGFLPSNLAFVRRLFKENFLGVFVQK 839
Query: 729 C---RIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKG 785
+I +PK + D G+L GQ+ + + + E D T +
Sbjct: 840 LEALKIKIPKSTYVYCIPDPYGVLEEGQIHLDLGDSWE-------------DGTTDLDGI 886
Query: 786 KVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFF 845
VLV + P P D++ AV+ L + + IFP KGE P + SGGD DGD +
Sbjct: 887 DVLVARAPAHLPSDIQKCRAVFHPAL--RYLKNVAIFPTKGEVPLASLLSGGDYDGDEVW 944
Query: 846 ISWDNDLIPCETEPPMDY---------------TGRRSRIMDHDVTLEEIHKFFVDYMIN 890
+ WD +++ +P ++Y RR M D +E F+ M
Sbjct: 945 VCWDQEIV----KPFVNYPMPEIPEPEEYGLVKVSRRVGDMPFDRFMENS---FIFNMSQ 997
Query: 891 DTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTG--APAE 937
+ LG + H + D S +H + L S D K+G PAE
Sbjct: 998 NPLGLCTNEHERYCYHR-DGIGSPLAIHFSGLLSHLADIRKSGYEYPAE 1045
>gi|116208690|ref|XP_001230154.1| hypothetical protein CHGG_03638 [Chaetomium globosum CBS 148.51]
gi|88184235|gb|EAQ91703.1| hypothetical protein CHGG_03638 [Chaetomium globosum CBS 148.51]
Length = 1372
Score = 77.0 bits (188), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 85/329 (25%), Positives = 144/329 (43%), Gaps = 45/329 (13%)
Query: 560 CFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSFRK---LSLRRSM 616
+DGIG++S AR+V GLS PSA Q R G KG+ +D + + S
Sbjct: 668 VMNDGIGRMSRGVARKVRDALGLSDIPSAIQGRMGSAKGMWLMDVGNSGDTDWIETYPSQ 727
Query: 617 LKF-----ESRNRMLNV-TKWSESMPCFLNREIISLLSTLGV-KDEVFEAMQQQQLILLG 669
K+ + +R L V + SE P LN + + +L K + A+ + L
Sbjct: 728 RKWNCDDTDPYHRTLEVRSVASELKPAGLNLQFLPVLEDRARDKRRMKHAIGNRLTNNLE 787
Query: 670 KMLINREAALDVLQK-----------------------LNGV-DSKNILVKMLLQ-GYEP 704
N++ AL + L G+ +SK+ ++ LL G++P
Sbjct: 788 LQFENQKTALKRPSQFRQWVNENSNDRGSRVKHGQVPFLGGLPESKSEILHFLLNSGFDP 847
Query: 705 NVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREE 764
+ YL + + + L+++ I V + + D G+L +V V + ++
Sbjct: 848 KSQKYLQDLAFELQKQKCDILRTKLNIRVGRSAYIYMVIDFWGVLEENEVHVGFS-SKFR 906
Query: 765 LESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQ 824
ES D S+ T + VLV ++P DV+ + AV++ +L D I+F
Sbjct: 907 DESDDISY-------TLLADCDVLVARSPAHFVSDVQKVRAVFKPELHA--LKDVIVFSA 957
Query: 825 KGERPHPNECSGGDLDGDIFFISWDNDLI 853
KG P ++ SGGD DGD+ ++ WD D++
Sbjct: 958 KGNIPLADKLSGGDYDGDMAWVCWDPDIV 986
>gi|70997928|ref|XP_753696.1| RNA-directed RNA polymerase [Aspergillus fumigatus Af293]
gi|66851332|gb|EAL91658.1| RNA-directed RNA polymerase, putative [Aspergillus fumigatus Af293]
Length = 1318
Score = 77.0 bits (188), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 115/495 (23%), Positives = 195/495 (39%), Gaps = 87/495 (17%)
Query: 557 NTYCFSDGIGKISLSFARQVAQKCGLS-HTPSAFQIRYGGYKGVIAVDRNSFRK------ 609
N +DG +S A + + G++ +TPSAFQ R G KG+ VDR++
Sbjct: 633 NRPVMNDGCALMSRPLANAICDQLGITGNTPSAFQGRIAGAKGLWMVDRHNSGISGGGDD 692
Query: 610 --LSLRRSMLKFESRNR-----------MLNVTKWSESM-PCFLNREIISLLSTLG-VKD 654
+ + S LK + + V KWS+ + P LN +++++L G V++
Sbjct: 693 FWIQISDSQLKIQPHPQAWRGPVDDEKLTFEVVKWSKPLHPVELNTQLLAILEHGGQVRE 752
Query: 655 EVFEAMQQQQLIL---LGKMLINREAAL--DVLQK--------LNGVDSK---------- 691
+ E + + +L + AAL ++QK L+G++ +
Sbjct: 753 HIAELTRAGIRAISQDFASVLESNSAALCRSLIQKIKPMADDGLSGINQRMKRLEQWTAN 812
Query: 692 --NILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGIL 749
++++ G+ P L L + L I VP D G+L
Sbjct: 813 DAEAIIRLTEAGFAPRSFYPLRRRLGRCLRDLLDRYVDELHIEVPLSTYAFCIADPYGVL 872
Query: 750 NYGQVFVRVTMT-REELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYE 808
+V + R+ + + VD VLV + P P D++ AV++
Sbjct: 873 KEDEVHFGFSNNWRDARGQFEDNLLDGVD---------VLVGRLPAHVPSDIQRRRAVWK 923
Query: 809 MKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI--------PCETEPP 860
+L + + D I+FP G+ P + SGGD DGD +I WD +++ P E PP
Sbjct: 924 TEL--RHFKDVIVFPTTGDIPLAHMLSGGDYDGDTPWICWDQNIVQRFQNSDLPTEEYPP 981
Query: 861 MDYTGRRSRIMDHDV--TLEEIHKFFVDYMINDTLGAISTAH-LVHADRDPDKARSSKCL 917
+ + + D+ T E + F + LG + H + D D AR+ +
Sbjct: 982 EHFGLTKHPVSMRDIQSTDEFLQSAFTFNLTTSNLGRCTVEHEKIAYDESIDSARAKE-- 1039
Query: 918 HLATLHSMAVDFAKTGA--------PAEMPLALKPKEFPDFMEREDKPR------YISFG 963
LA L S VD K G ++ K +E P + KP+ Y+ F
Sbjct: 1040 -LACLLSHLVDGRKGGVHLSEQAWQQYRKKVSPKAREVPAYKNAGRKPKKTSIIDYLKFE 1098
Query: 964 VLGKLYRATLDSIMQ 978
V K A L+ + +
Sbjct: 1099 VARKERHAVLEDLQR 1113
>gi|251765119|sp|Q5QMN5.2|RDR3_ORYSJ RecName: Full=Probable RNA-dependent RNA polymerase 3; Short=OsRDR3
Length = 1153
Score = 77.0 bits (188), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 105/397 (26%), Positives = 170/397 (42%), Gaps = 54/397 (13%)
Query: 600 IAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEA 659
I RN+ + LS +S+ FE V+ + +R +I+LL GV +E F
Sbjct: 645 IVSARNAKKSLSGVQSVNSFEI------VSTSNRPRRTLTSRFLITLLCYGGVPEEYFLE 698
Query: 660 MQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHE 719
+ Q + + E AL + ++ ++ +M+L G P E YL L +
Sbjct: 699 LLQSAIEGAENACYDYEDALRIAFSYADMED-SMSARMILSGI-PLEESYLQHRLDFMAQ 756
Query: 720 NQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDK 779
+ +K + +I + + L+ D TG L +V V + +
Sbjct: 757 QERKGIK-QGKIPIDECYYLMDTTDPTGTLRPNEVCVIL--------------------E 795
Query: 780 TSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVD----CIIFPQKGERPHPNECS 835
G VLV K+P LH GD+ VL+A Y L EK+YV I+FP G R +E +
Sbjct: 796 NGQFSGDVLVYKHPGLHFGDIHVLKATYIRDL-EKEYVGYAKYAILFPISGPRSLADEMA 854
Query: 836 GGDLDGDIFFISWDNDLI----PCE--TEPPMDYTGRRSRIMD-HDVTLEEI--HKFF-V 885
D DGDI+++S + L+ P E + ++ + D ++ LE + H+F
Sbjct: 855 NSDFDGDIYWVSKNPKLLEHFKPSEPWVQAIKPKKTKQKKPQDCNESKLERLLFHEFLKT 914
Query: 886 DYMINDTLGAISTAHLVHADR--------DPDKARSSKCLHLATLHSMAVDFAKTGAPAE 937
+ + LG + + L + DR K K L L L+ +A+D KTG
Sbjct: 915 RFTPSFALGTAADSWLAYMDRLLTDSLDEIEKKLIEEKMLKLVDLYYLALDAPKTGNKVN 974
Query: 938 MPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLD 974
+P L K++P FM R Y S +LG++Y D
Sbjct: 975 IPSDLMVKQYPHFMGRSFS--YHSSSILGQIYDKAED 1009
>gi|242216295|ref|XP_002473956.1| predicted protein [Postia placenta Mad-698-R]
gi|220726900|gb|EED80835.1| predicted protein [Postia placenta Mad-698-R]
Length = 1264
Score = 76.3 bits (186), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 84/174 (48%), Gaps = 19/174 (10%)
Query: 694 LVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQ 753
++++L G++P P L L +++ D +I VP+ D G+L GQ
Sbjct: 790 VLELLQAGFQPLKLPLLYEKLRKVVADRIEDYIRNYKITVPRSAEAFIIPDPYGVLEEGQ 849
Query: 754 VFVRVTMT-REELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLE 812
+ + T ++ LE + +IV G VL+ +NP P DVR ++AV KL+
Sbjct: 850 IHFKSTQNLKDPLE----------ESNPTIVTGDVLIYRNPTRVPSDVRKVKAVSHPKLD 899
Query: 813 EKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI------PCETEPP 860
+ YV+ I+ P KG R N +GGD+DGD+ +D DL+ P PP
Sbjct: 900 K--YVNVIVLPVKGSRSLANILAGGDVDGDVCTCIFDPDLVDSFENSPINDPPP 951
>gi|222617920|gb|EEE54052.1| hypothetical protein OsJ_00745 [Oryza sativa Japonica Group]
Length = 1243
Score = 76.3 bits (186), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 105/397 (26%), Positives = 170/397 (42%), Gaps = 54/397 (13%)
Query: 600 IAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEA 659
I RN+ + LS +S+ FE V+ + +R +I+LL GV +E F
Sbjct: 726 IVSARNAKKSLSGVQSVNSFEI------VSTSNRPRRTLTSRFLITLLCYGGVPEEYFLE 779
Query: 660 MQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHE 719
+ Q + + E AL + ++ ++ +M+L G P E YL L +
Sbjct: 780 LLQSAIEGAENACYDYEDALRIAFSYADMED-SMSARMILSGI-PLEESYLQHRLDFMAQ 837
Query: 720 NQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDK 779
+ +K + +I + + L+ D TG L +V V + +
Sbjct: 838 QERKGIK-QGKIPIDECYYLMDTTDPTGTLRPNEVCVIL--------------------E 876
Query: 780 TSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVD----CIIFPQKGERPHPNECS 835
G VLV K+P LH GD+ VL+A Y L EK+YV I+FP G R +E +
Sbjct: 877 NGQFSGDVLVYKHPGLHFGDIHVLKATYIRDL-EKEYVGYAKYAILFPISGPRSLADEMA 935
Query: 836 GGDLDGDIFFISWDNDLI----PCE--TEPPMDYTGRRSRIMD-HDVTLEEI--HKFF-V 885
D DGDI+++S + L+ P E + ++ + D ++ LE + H+F
Sbjct: 936 NSDFDGDIYWVSKNPKLLEHFKPSEPWVQAIKPKKTKQKKPQDCNESKLERLLFHEFLKT 995
Query: 886 DYMINDTLGAISTAHLVHADR--------DPDKARSSKCLHLATLHSMAVDFAKTGAPAE 937
+ + LG + + L + DR K K L L L+ +A+D KTG
Sbjct: 996 RFTPSFALGTAADSWLAYMDRLLTDSLDEIEKKLIEEKMLKLVDLYYLALDAPKTGNKVN 1055
Query: 938 MPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLD 974
+P L K++P FM R Y S +LG++Y D
Sbjct: 1056 IPSDLMVKQYPHFMGRSFS--YHSSSILGQIYDKAED 1090
>gi|440464051|gb|ELQ33552.1| RNA-dependent RNA polymerase [Magnaporthe oryzae Y34]
gi|440477644|gb|ELQ58660.1| RNA-dependent RNA polymerase [Magnaporthe oryzae P131]
Length = 1738
Score = 76.3 bits (186), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 83/381 (21%), Positives = 162/381 (42%), Gaps = 55/381 (14%)
Query: 509 WMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKI 568
W F++I+ +G S + T+V ++ ++ GN +DGIG +
Sbjct: 540 WPKLFSRIQ-----LGYLGSGLSRTHPTVVFAPLEIHAEEHDLMSPAGN--VMNDGIGLM 592
Query: 569 SLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVD---RNSFRKLSLRRSMLKF-----E 620
S S AR+V Q G+ P A Q R G KG+ +D ++ R + S K+ +
Sbjct: 593 SRSVAREVQQILGIQDLPCAVQGRLGSAKGMWIIDPFDQSDDRWIKTYPSQRKWNCTSAD 652
Query: 621 SRNRMLNVTKWSESM-PCFLNREIISLLSTL-----GVKDEVFEAMQQQQLILLGKMLIN 674
S +R L + ++ + LN + + +L G++D + E ++ L + +
Sbjct: 653 SHHRTLEIKTHAKPLRSASLNLQFLPVLHDRSKHKHGMRDSIGELLRTSLRTELESVQVA 712
Query: 675 REAALDVLQ--------------------KLNGVDSKN--ILVKMLLQGYEPNVEPYLSM 712
+ LQ +L G+ ++ ++ +M+ G+ P + YL
Sbjct: 713 LRSPQQFLQWVHENSNHRQGLGNTSFEVPRLGGLPERDEDVMAEMVRAGFNPRGQKYLQD 772
Query: 713 MLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSF 772
+ + + + L+ + I V + D G++ G+V + + + F
Sbjct: 773 IAWNIQKQKCETLREKLNIKVGMSTYALMVVDFWGVVPEGEVHLCFS----------EKF 822
Query: 773 FHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPN 832
T + +VLV ++P + D++ ++AV+ +L KD D I+F + G +
Sbjct: 823 TCDGFSGTLLNDQEVLVARSPAHYVSDIQKVKAVFRPEL--KDLKDVIVFSRNGNVALAD 880
Query: 833 ECSGGDLDGDIFFISWDNDLI 853
SGGD DGDI ++ WD+ ++
Sbjct: 881 RLSGGDYDGDIAWVCWDSKIV 901
>gi|389740950|gb|EIM82140.1| hypothetical protein STEHIDRAFT_124929 [Stereum hirsutum FP-91666
SS1]
Length = 982
Score = 76.3 bits (186), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 85/173 (49%), Gaps = 18/173 (10%)
Query: 697 MLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFV 756
+L G+ P P L+ L + ++ +RC++ VP D G+LN G++ +
Sbjct: 488 LLDSGFTPQNNPVLASKLEKVIKGAVNKRLARCKVEVPMACTAFIIPDPFGVLNEGEIHI 547
Query: 757 RVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDY 816
+ ++T L+ +D T+ + G VLVT+NPC P D++ + AV+ +L +DY
Sbjct: 548 KSSLT--NLQRQDGL-------STAQILGPVLVTRNPCKLPSDIQKVTAVFCAEL--RDY 596
Query: 817 VDCIIFPQKGERPHPNECSGGDLDGDIFFISWD----NDLIPCET---EPPMD 862
D I+F KG R + + GD DGD W +D + +T +PP D
Sbjct: 597 DDVIVFSTKGRRSLASLLATGDYDGDKAVAIWQPEIVDDFVNADTKFADPPAD 649
>gi|392597508|gb|EIW86830.1| hypothetical protein CONPUDRAFT_115565 [Coniophora puteana
RWD-64-598 SS2]
Length = 1143
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 105/446 (23%), Positives = 180/446 (40%), Gaps = 95/446 (21%)
Query: 513 FNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSF 572
FN ++++K AR S+S L + ++ +PD SD +DG G I+ +
Sbjct: 412 FNAGQTLAKWTARFALGLSNSVPGLTLEQYNIFELPDTPGPSD-----MTDGCGYINRAA 466
Query: 573 ARQVAQKCGLSHTPSAFQIRYGGYKGVIAV---DRN---SFRKLSLRRSMLKFE------ 620
R++ + L P+A Q R G KG++ + DR + K+ LR S +K
Sbjct: 467 MRKLREILPLESVPTAIQCRIAGAKGLLLMHPDDRENDATEPKVWLRTSQIKIRYPSGQS 526
Query: 621 --SRNRMLNVTKWSE-SMPCFLNREIISLLSTLGVKDEVF-------------------- 657
S R ++V + S P L+ E I L GV ++F
Sbjct: 527 LASGQRTIDVLRTSHMKTPSRLSPETIINLGENGVPHQIFVDLLKKSLDESVDPLLSWEG 586
Query: 658 -EAMQQ-----QQLILLGKMLINREAAL--------------DVLQKLNGVDS------- 690
+AM+Q Q+ + ++REA D + L+ VD
Sbjct: 587 PKAMEQLWFNISQVGRVFAARLSREAGGEARVMGYSAGDLEDDNEEDLDPVDPDAPRSAA 646
Query: 691 -------------KNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGR 737
+ + +L G+ P P L L + ++ + +R ++ VP
Sbjct: 647 WWADEISGCPSSLEETAMALLDSGFTPQECPVLRDKLTAVVKSTVDRHVARYKLDVPMSC 706
Query: 738 LLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHP 797
+ D GIL +V +R +++ L KD S K V G VL+T++PC P
Sbjct: 707 IAWMVPDPFGILAPDEVHIR--SSQDNLLQKDGS-------KAQTVLGSVLLTRHPCKLP 757
Query: 798 GDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCET 857
DV+ + AV +L Y D I+ +G+R + +GGD DGD + W+ +I
Sbjct: 758 TDVQKVTAVQRGEL--AGYTDVIVCSIQGDRRFADLLAGGDYDGDKAIVIWEPTIINTFR 815
Query: 858 EPPMDYTGRRSRIMDH----DVTLEE 879
+ ++ +M H ++T+E+
Sbjct: 816 NADLKFSKAPEDLMSHFLKENITVEQ 841
>gi|189208947|ref|XP_001940806.1| RNA-directed RNA polymerase 2 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187976899|gb|EDU43525.1| RNA-directed RNA polymerase 2 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 1436
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 108/445 (24%), Positives = 190/445 (42%), Gaps = 77/445 (17%)
Query: 547 IPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNS 606
PD V DG + S G I ++ G PS FQ R G KGV + S
Sbjct: 751 FPDGTVMDDGCS-IISVGAALIIWQLYKKATGTTG--PLPSIFQGRIAGAKGVWIISAES 807
Query: 607 FRK--------LSLRRSMLKFES---------RNRMLNVTKWSES----------MPCFL 639
+ K + + S KF +R ++ +S S +P +
Sbjct: 808 YTKDPEHLKPWIMINASQWKFNPPEDALLDHEHHRTFELSNYSSSPTPSELHISFIPILV 867
Query: 640 NREI-ISLLSTLGVKDEVFEAMQQQQLILLG---KML--INR-----EAALDVLQKLNGV 688
+R++ ++++ +L +KD + EA + + L LL KM ++R ++ DV +
Sbjct: 868 DRKVPLTVIDSL-MKDSL-EAERTKLLDLLPDPVKMYDWVHRNGTKTQSGNDVPWQAAMP 925
Query: 689 DSKNILVKMLLQ-GYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETG 747
S VK+LL+ G+ P L+ L + + +S+ R+ + K L G D
Sbjct: 926 VSLEEKVKLLLESGFSPAKFQPLAQSLQRFIQAKQILQESKLRVPLAKSTFLFGIVDPFE 985
Query: 748 ILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVY 807
+L GQ+ V+ + + + ++ D+ + D +VLV + P D++ + V
Sbjct: 986 VLEPGQIQVQFSSSFAD-DTTDEKYLGLRD-------MEVLVARQPACRRSDIQKVRTV- 1036
Query: 808 EMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI--------PCETEP 859
++ E VD ++FP +G P + GGD DGDIF+I W+ L+ P ++
Sbjct: 1037 -IRPELSHLVDVVVFPSRGRYPLAGKLQGGDYDGDIFWICWEPQLVLPFLNAPAPVQSPD 1095
Query: 860 PMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHL-----VHADRDPDKARSS 914
P Y +++ DV ++ + VD ++ + A S + + V A++ +A
Sbjct: 1096 PARYEIKKTTAKVRDV-IDTRNPGDVDRLLEMAIEARSKSSMLGMVTVFAEK---QAYRE 1151
Query: 915 KCLHLATL------HSMAVDFAKTG 933
C+H ATL H + VD K G
Sbjct: 1152 NCIHSATLEALYDMHDLLVDAPKQG 1176
>gi|389627942|ref|XP_003711624.1| RNA-dependent RNA polymerase [Magnaporthe oryzae 70-15]
gi|351643956|gb|EHA51817.1| RNA-dependent RNA polymerase [Magnaporthe oryzae 70-15]
Length = 1261
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 74/329 (22%), Positives = 143/329 (43%), Gaps = 48/329 (14%)
Query: 561 FSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVD---RNSFRKLSLRRSML 617
+DGIG +S S AR+V Q G+ P A Q R G KG+ +D ++ R + S
Sbjct: 580 MNDGIGLMSRSVAREVQQILGIQDLPCAVQGRLGSAKGMWIIDPFDQSDDRWIKTYPSQR 639
Query: 618 KF-----ESRNRMLNVTKWSESM-PCFLNREIISLLSTL-----GVKDEVFEAMQQQQLI 666
K+ +S +R L + ++ + LN + + +L G++D + E ++
Sbjct: 640 KWNCTSADSHHRTLEIKTHAKPLRSASLNLQFLPVLHDRSKHKHGMRDSIGELLRTSLRT 699
Query: 667 LLGKMLINREAALDVLQ--------------------KLNGVDSKN--ILVKMLLQGYEP 704
L + + + LQ +L G+ ++ ++ +M+ G+ P
Sbjct: 700 ELESVQVALRSPQQFLQWVHENSNHRQGLGNTSFEVPRLGGLPERDEDVMAEMVRAGFNP 759
Query: 705 NVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREE 764
+ YL + + + + L+ + I V + D G++ G+V + +
Sbjct: 760 RGQKYLQDIAWNIQKQKCETLREKLNIKVGMSTYALMVVDFWGVVPEGEVHLCFS----- 814
Query: 765 LESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQ 824
+ F T + +VLV ++P + D++ ++AV+ +L KD D I+F +
Sbjct: 815 -----EKFTCDGFSGTLLNDQEVLVARSPAHYVSDIQKVKAVFRPEL--KDLKDVIVFSR 867
Query: 825 KGERPHPNECSGGDLDGDIFFISWDNDLI 853
G + SGGD DGDI ++ WD+ ++
Sbjct: 868 NGNVALADRLSGGDYDGDIAWVCWDSKIV 896
>gi|325190799|emb|CCA25290.1| RNAdependent RNA Polymerase1 (RDR1) putative [Albugo laibachii Nc14]
Length = 557
Score = 74.3 bits (181), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 109/242 (45%), Gaps = 15/242 (6%)
Query: 890 NDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPD 949
+ LG S AHL D + + LA + S+ VD + ++ L P +PD
Sbjct: 4 SSVLGIASNAHLARCDYSDKGSFDPDSMKLAWICSLQVDGHRAEEHLQVIRDLSPPIYPD 63
Query: 950 FMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGV 1009
FME E + + S LG LYR++ I+ + ++ K E + + V + + +
Sbjct: 64 FMESE-RFSHRSSKSLGTLYRSS--KILTLLDHSCL--KYDEQHVNDEFMVGNYTKYAAL 118
Query: 1010 AESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGD-MKDRILLSAKN 1068
+ Y ALM YGA E E+ +G + + D R+G+ +D KN
Sbjct: 119 TKILYRQYSRSTAALMRMYGAVLEGELASGLIIKTDDLYRTDYFRFGERCRDAFF---KN 175
Query: 1069 LQNEAKEWFGSSC---KENEHPQLASAWYHVTYSPSYCKERMALLSFPWIVGDILLNIKS 1125
++ + ++ F C E E +LASAWY+ +S + R LSF WI+ D LL S
Sbjct: 176 VR-QYRKIFSVLCGTLNEFERCELASAWYYAVFSCKNGQNR--FLSFGWIIMDELLMSFS 232
Query: 1126 VN 1127
+N
Sbjct: 233 IN 234
>gi|119183445|ref|XP_001242762.1| hypothetical protein CIMG_06658 [Coccidioides immitis RS]
gi|392865671|gb|EAS31478.2| hypothetical protein CIMG_06658 [Coccidioides immitis RS]
Length = 1372
Score = 73.6 bits (179), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 96/391 (24%), Positives = 166/391 (42%), Gaps = 57/391 (14%)
Query: 514 NKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIP---DVEVTSDGNTYC----FSDGIG 566
NK K R+ S + T+V+ + + + P D+ + GN SDG
Sbjct: 649 NKESKDCKIFQRLALGLSRTIPTVVIRPEHIIIHPRHIDIPLEDRGNMKSSQPDMSDGCA 708
Query: 567 KISLSFARQVAQKCGL-SHTPSAFQIRYGGYKGVIAVD-RN-SFRK---LSLRRSMLKFE 620
+S+S A ++ GL PS FQ R G KG+ VD RN +F+ + + S LK +
Sbjct: 709 LMSVSLANRIKDCLGLKEENPSCFQGRIAGAKGIWMVDGRNIAFKGEECIQISGSQLKTK 768
Query: 621 ---SRNRML--------NVTKWSESM-PCFLNREIISLLSTLGVKDEVFEAMQQQQLIL- 667
S RM+ V WS+ + P LN +++ +L GV+ + + + + ++
Sbjct: 769 PHPSDCRMMLDDHQLTFEVVSWSKELRPVNLNVQLLMVLQHGGVQTDRLKNLVRCEMNTW 828
Query: 668 ---LGKMLINREAALDVLQK-----------LNGVDSKNILVKMLL--QGYEPNVEPYLS 711
++ N A+ +QK ++ ++N+ +LL G+ P YL
Sbjct: 829 YQEFKGIITNEIASRAWVQKQGLYEKRKTRRIDDFPTENVEQAILLLDSGFHPLKSVYLM 888
Query: 712 MMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQS 771
L + ++ + L S +I +P+ D +L +V + + +
Sbjct: 889 NRLKTFLDDYCARLDS-LKIRIPESTYAYCIADPYNVLAEDEVHLGFSRPWDS------- 940
Query: 772 FFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHP 831
+ T + VLV +NP P D++ AV++ +L + + D I+FP G P
Sbjct: 941 -----EGYTDLDGMDVLVGRNPAHLPSDIQKRRAVFKKEL--RHFKDVIVFPTAGALPLA 993
Query: 832 NECSGGDLDGDIFFISWDNDLIPCETEPPMD 862
+ SGGD DGD + WD L+ T P D
Sbjct: 994 SMLSGGDYDGDQVWTCWDPQLVNQFTNTPFD 1024
>gi|303319845|ref|XP_003069922.1| RNA dependent RNA polymerase family protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240109608|gb|EER27777.1| RNA dependent RNA polymerase family protein [Coccidioides posadasii
C735 delta SOWgp]
Length = 1372
Score = 73.6 bits (179), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 98/391 (25%), Positives = 168/391 (42%), Gaps = 57/391 (14%)
Query: 514 NKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIP---DVEVTSDGNTYC----FSDGIG 566
NK K R+ S + T+VV + + + P D+ + GN SDG
Sbjct: 649 NKESKDCKIFQRLALGLSRTIPTVVVRPEHIIIHPRHIDIPLEDRGNMKSSQPDMSDGCA 708
Query: 567 KISLSFARQVAQKCGLSH-TPSAFQIRYGGYKGVIAVD-RN-SFRK---LSLRRSMLKFE 620
+S+S A ++ GL PS FQ R G KG+ VD RN +F+ + + S LK +
Sbjct: 709 LMSVSLANRIKDCLGLKEENPSCFQGRIAGAKGIWMVDGRNIAFKGEECIQISGSQLKTK 768
Query: 621 ---SRNRML--------NVTKWSESM-PCFLNREIISLLSTLGVKDEVFEAMQQQQLIL- 667
S RM+ V WS + P LN +++ +L GV+ + + + + ++
Sbjct: 769 PHPSDCRMMLDDHQLTFEVVSWSRELRPVNLNVQLLMVLQHGGVQTDRLKNLVRCEMNTW 828
Query: 668 ---LGKMLINREAALDVLQK-----------LNGVDSKNILVKMLL--QGYEPNVEPYLS 711
++ N A+ +QK ++ ++N+ +LL G+ P YL
Sbjct: 829 YQEFKDIITNEIASRAWVQKQGLYEKRKTRRIDDFPTENVEQAILLLDSGFHPLKSVYLM 888
Query: 712 MMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQS 771
L + ++ + L S +I +P+ D +L +V + + + +S+ +
Sbjct: 889 NRLKTFLDDYCARLDS-LKIRIPESTYAYCIADPYNVLAEDEVHLGFS---KPWDSEGYT 944
Query: 772 FFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHP 831
+D VLV +NP P D++ AV++ +L + + D I+FP G P
Sbjct: 945 DLDGMD---------VLVGRNPAHLPSDIQKRRAVFKKEL--RYFKDVIVFPTAGALPLA 993
Query: 832 NECSGGDLDGDIFFISWDNDLIPCETEPPMD 862
+ SGGD DGD + WD L+ T P D
Sbjct: 994 SMLSGGDYDGDQVWTCWDPQLVNQFTNAPFD 1024
>gi|295666726|ref|XP_002793913.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226277566|gb|EEH33132.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 1176
Score = 73.2 bits (178), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 95/410 (23%), Positives = 159/410 (38%), Gaps = 89/410 (21%)
Query: 499 DEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNT 558
D++S DV + N +S K R+ S + T+V+ ++V PD +
Sbjct: 472 DKLSTGDVVT-LSADNIHQSDCKLFQRLALGLSRTLSTVVLRREEVIFCPDPPGS----- 525
Query: 559 YCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSFR--------KL 610
+DG +S S ++ + L P+ +Q R G KG+ VD + R L
Sbjct: 526 -VMNDGCALMSRSLGLEIKRILDLEALPACYQGRISGAKGIWMVDCDDSRFKGGDRGFGL 584
Query: 611 SLRRSMLKF-------------ESRNRMLNVTKWSESM-PCFLNREIISLLSTLGVKDEV 656
+ S LK + V +WS+ + P LN +++ +L GV
Sbjct: 585 EITESQLKISYPPGPPHNPRLVDDTQLTFEVVQWSQPLNPSSLNLQVLKVLQHGGVGHSH 644
Query: 657 FEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKM------------------- 697
+ + QQ++ + K L V+ NGV + L KM
Sbjct: 645 IKKLIQQEISIFYKEF------LKVIHLSNGVACRKWLQKMKRFGDDGYSYKRQTRRIDN 698
Query: 698 -------------LLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFD 744
L G+ P PYL+ + ++ L L+ + ++ V + D
Sbjct: 699 FFPSQYVEQAVLLLDSGFLPLKLPYLTQLFRWILKDYLDSLR-KLKVSVSQSTYAYCIAD 757
Query: 745 ETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGK-----VLVTKNPCLHPGD 799
G+L+ +V F H +D + +V + VLV + P P D
Sbjct: 758 PLGVLSPDEVHF--------------GFSHEWEDGSVVVGTELHNINVLVARLPAHLPTD 803
Query: 800 VRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWD 849
++ AVY+ +L + + D IIFP G+ P + SGGD DGD ++ WD
Sbjct: 804 IQKRRAVYKNEL--RHFKDVIIFPTTGDVPLASLLSGGDYDGDQCWVCWD 851
>gi|240277746|gb|EER41254.1| RNA-directed RNA polymerase [Ajellomyces capsulatus H143]
Length = 1317
Score = 73.2 bits (178), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 78/333 (23%), Positives = 135/333 (40%), Gaps = 58/333 (17%)
Query: 561 FSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSFR--------KLSL 612
+DG +S S VA GL P+ FQ R G KGV VD + R L +
Sbjct: 625 MNDGCALMSKSLGMAVASALGLDGHPAIFQARISGAKGVWMVDLDDSRFKTGDRGFWLQI 684
Query: 613 RRSMLK-----------FESRNRMLNVTKWSESM-PCFLNREIISLLSTLGVKDEVFEAM 660
+S LK + V +WS + P LN +++++L G++++ +
Sbjct: 685 TQSQLKIYPAPPHDTKPMDDTQLTFEVVQWSRPLSPASLNMQLLNILQHGGIRNDHIRNL 744
Query: 661 QQQQL---------ILLGKMLINREAALDVLQKLNGVDSKNI---------------LVK 696
+Q++ LL + + L ++ + SK +
Sbjct: 745 IRQEMSSFYDEFLRTLLCSSGVECRSWLQKMKWITNESSKRQSKRTDNFFPPQYAEQAIM 804
Query: 697 MLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFV 756
+L G+ P PYL+ + ++ L +LK + +I V + D G+L +V
Sbjct: 805 LLDAGFLPLKLPYLTKIFRRLLQDYLDNLK-KLKITVSQSTFAYCVADPFGVLRPDEV-- 861
Query: 757 RVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDY 816
+ +RE + H +D VL+ + P D++ +VY+ +L +
Sbjct: 862 HLGFSREWEHGSASTELHDID---------VLLARLPAHLATDIQKRRSVYKNEL--RHM 910
Query: 817 VDCIIFPQKGERPHPNECSGGDLDGDIFFISWD 849
D I+FP G+ P + SGGD DGD ++ WD
Sbjct: 911 KDVIVFPTTGDTPLASLLSGGDYDGDQCWVCWD 943
>gi|320034225|gb|EFW16170.1| conserved hypothetical protein [Coccidioides posadasii str.
Silveira]
Length = 1289
Score = 73.2 bits (178), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 98/391 (25%), Positives = 168/391 (42%), Gaps = 57/391 (14%)
Query: 514 NKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIP---DVEVTSDGNTYC----FSDGIG 566
NK K R+ S + T+VV + + + P D+ + GN SDG
Sbjct: 566 NKESKDCKIFQRLALGLSRTIPTVVVRPEHIIIHPRHIDIPLEDRGNMKSSQPDMSDGCA 625
Query: 567 KISLSFARQVAQKCGL-SHTPSAFQIRYGGYKGVIAVD-RN-SFRK---LSLRRSMLKFE 620
+S+S A ++ GL PS FQ R G KG+ VD RN +F+ + + S LK +
Sbjct: 626 LMSVSLANRIKDCLGLKEENPSCFQGRIAGAKGIWMVDGRNIAFKGEECIQISGSQLKTK 685
Query: 621 ---SRNRML--------NVTKWSESM-PCFLNREIISLLSTLGVKDEVFEAMQQQQLIL- 667
S RM+ V WS + P LN +++ +L GV+ + + + + ++
Sbjct: 686 PHPSDCRMMLDDHQLTFEVVSWSRELRPVNLNVQLLMVLQHGGVQTDRLKNLVRCEMNTW 745
Query: 668 ---LGKMLINREAALDVLQK-----------LNGVDSKNILVKMLL--QGYEPNVEPYLS 711
++ N A+ +QK ++ ++N+ +LL G+ P YL
Sbjct: 746 YQEFKDIITNEIASRAWVQKQGLYEKRKTRRIDDFPTENVEQAILLLDSGFHPLKSVYLM 805
Query: 712 MMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQS 771
L + ++ + L S +I +P+ D +L +V + + + +S+ +
Sbjct: 806 NRLKTFLDDYCARLDS-LKIRIPESTYAYCIADPYNVLAEDEVHLGFS---KPWDSEGYT 861
Query: 772 FFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHP 831
+D VLV +NP P D++ AV++ +L + + D I+FP G P
Sbjct: 862 DLDGMD---------VLVGRNPAHLPSDIQKRRAVFKKEL--RYFKDVIVFPTAGALPLA 910
Query: 832 NECSGGDLDGDIFFISWDNDLIPCETEPPMD 862
+ SGGD DGD + WD L+ T P D
Sbjct: 911 SMLSGGDYDGDQVWTCWDPQLVNQFTNTPFD 941
>gi|330915603|ref|XP_003297095.1| hypothetical protein PTT_07392 [Pyrenophora teres f. teres 0-1]
gi|311330417|gb|EFQ94809.1| hypothetical protein PTT_07392 [Pyrenophora teres f. teres 0-1]
Length = 1415
Score = 72.8 bits (177), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 107/449 (23%), Positives = 174/449 (38%), Gaps = 85/449 (18%)
Query: 547 IPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNS 606
PD V DG + S G I R+ G PS FQ R G KGV + S
Sbjct: 733 FPDGAVMDDGCS-IISVGAALIIWHLYRKATGTTG--PLPSIFQGRIAGAKGVWMISAES 789
Query: 607 FRK--------LSLRRSMLKF---------ESRNRMLNVTKWSES-MPCFLNREIISLLS 648
+ K + + S KF +R ++ +S S P L+ I +L
Sbjct: 790 YTKDPDHLKPWIMINASQWKFNPPEDAMLDHEHHRTFELSNYSSSPTPSELHISFIPILV 849
Query: 649 TLGVKDEVFEAMQQQQLILLGKMLINREAALDVL-----------------QKLNGVDSK 691
V V +++ + L + R LD+L Q N V +
Sbjct: 850 DRKVPMTVIDSLMKDSL------EVERTKLLDLLPDPVKIYDWVHRNGTKTQTGNDVPWQ 903
Query: 692 NIL-------VKMLLQ-GYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCF 743
+ VK+LL+ G+ P L+ L + + +S+ R+ + K L G
Sbjct: 904 AAMPVSLEEKVKLLLESGFSPAKFSPLAQSLQRFIQAKQILQESKLRVPLAKSTFLFGIV 963
Query: 744 DETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVL 803
D G+L G++ V+ + + + ++ D+ + D +VLV + P D++ +
Sbjct: 964 DPLGVLEPGEIQVQFSSSFAD-DTTDEKYLCLRD-------MEVLVARQPACRRSDIQKV 1015
Query: 804 EAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI--------PC 855
V +L VD ++FP KG P + GGD DGDIF+I W+ L+ P
Sbjct: 1016 RTVIRSELSH--LVDVVVFPSKGRYPLAGKLQGGDYDGDIFWICWEPQLVQPFLNAPAPV 1073
Query: 856 ETEPPMDY-----TGRRSRIMDH------DVTLEEIHKFFVDYMINDTLGAISTAHLVHA 904
++ P Y T + +MD D LE +F + LG ++ A
Sbjct: 1074 QSPEPARYEIKKMTAKVRDVMDTRNPNDVDRFLEMAFEFRSKPSL---LGMVTVFAEKQA 1130
Query: 905 DRDPDKARSSKCLHLATLHSMAVDFAKTG 933
R+ ++ S+ L +H + VD K G
Sbjct: 1131 YRE-NRIYSATLEALYDMHDLLVDAPKQG 1158
>gi|426198482|gb|EKV48408.1| RNA-dependent RNA polymerase [Agaricus bisporus var. bisporus H97]
Length = 1114
Score = 72.8 bits (177), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 116/530 (21%), Positives = 214/530 (40%), Gaps = 134/530 (25%)
Query: 513 FNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVE--VTSDGNTYCFSDGIGKISL 570
N+ ++++K A+R S S + +++ I D+ V SD +DG G I+
Sbjct: 371 LNQRQTMAKWASRFALGLSPSILGFTLDEKNISFIEDIRSNVNSD-----MTDGAGYIT- 424
Query: 571 SFARQVAQKCGLSHT----PSAFQIRYGGYKGVIAVD---RNSFRKLSLRRSMLKFESR- 622
R + QK + H PSA Q+R G KG++ + ++ + LR S++K + R
Sbjct: 425 ---RHLLQKLSVLHNWGNRPSAIQVRVRGSKGLLVENPDVKDESLSIKLRPSLMKIDYRS 481
Query: 623 -----NRMLNVTKWSES-MPCFLNREIISLLSTLGVKDEVF-EAMQQ------------- 662
+R +++ + + P ++ ++I L GVK E E M++
Sbjct: 482 PLDATHRTIDILHAAHARTPTRISTDVIINLYENGVKFESLCELMKRSIDGIIASLINCL 541
Query: 663 ------------QQLILL-------GKMLINREAALDV-----------------LQKLN 686
+ L+ L G ++++R A DV +Q+ N
Sbjct: 542 GDAYDPNTLGSLKALLALWVSYERAGSVIMSRRAREDVALTRINGFSGDVLTKEGVQEPN 601
Query: 687 GVDS--------------------KNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLK 726
G+D + +++ L G+ P P L + + +S
Sbjct: 602 GLDDVLEHSTDWFPDRVSGCPSSLEETIIEFLDSGFHPKTCPVLREKMHKVVHSAISRAV 661
Query: 727 SRCRIYVP--KGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVK 784
I +P G +I D +G L +VF + + + L+ + T I+
Sbjct: 662 ENYTIELPFSAGAWIIP--DPSGCLGSNEVFFQCSRSLPALDGTE----------THIIT 709
Query: 785 GKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIF 844
G VL+T++PC P DV+ +A+ +L + Y D II +G R + +GGD DGD
Sbjct: 710 GDVLITRDPCRLPTDVQKWKAIDVPELHQ--YKDVIILSVQGPRRAADWLAGGDYDGDKA 767
Query: 845 FISWDNDLI-------PCETEPPMDYTGR----RSRIMD---------HDVTLEEIHKFF 884
+ W +L+ P +PP++ + ++ + D + E+ K+
Sbjct: 768 KLIWQPELVQDFVNANPSFADPPLNLDSKFEIENKQVHEFLAEIEGCSEDNKINEVQKYL 827
Query: 885 VDYMINDTL-GAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTG 933
+ + + TL G S H V + K++ +K LA + + +D KTG
Sbjct: 828 LGTLKDFTLVGKYSNFHEVSVYTNGYKSKETKL--LAYMFTTILDGRKTG 875
>gi|350635543|gb|EHA23904.1| hypothetical protein ASPNIDRAFT_40039 [Aspergillus niger ATCC 1015]
Length = 1307
Score = 72.8 bits (177), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 124/555 (22%), Positives = 217/555 (39%), Gaps = 92/555 (16%)
Query: 514 NKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFA 573
N +++ K R S + T+V+ + V +PDV + +DG +S A
Sbjct: 587 NLMQTNCKLFQRFSLALSKTYATVVLQPRQVLPLPDV------SKPVMNDGCALMSRGLA 640
Query: 574 RQVAQKCGLS-HTPSAFQIRYGGYKGVIAVDRNSFRK--------LSLRRSMLKF----- 619
++ GL+ +TPSAFQ R G KG+ VD++ + + S LK
Sbjct: 641 NKICDSLGLTGYTPSAFQGRIAGAKGLWMVDKHQSHVSADDNDVWIQISDSQLKIKPHPC 700
Query: 620 ------ESRNRMLNVTKWSESM-PCFLNREIISLL-------------STLGVKD--EVF 657
+ V KWS+ + P LN +++S+L + LG++ + F
Sbjct: 701 QWDESVDDEKLTFEVVKWSKPLHPVNLNIQLLSILDHGGHIKEHLADLTRLGIQSVYQEF 760
Query: 658 EAMQQQQLILLGKMLIN--REAALD----VLQKL----NGVDS-KNILVKMLLQGYEPNV 706
+ Q +L + L+ R + D V Q+ N + S ++++ G+ P
Sbjct: 761 ANVLQSDSAVLCRSLVQKIRPSGDDGFGPVSQRTWRFENWMSSDAEFIIRLTEAGFCPRS 820
Query: 707 EPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELE 766
+L L L RI VP D G+L +V + + +
Sbjct: 821 FYFLRKRLGKCLRELLKRHVDELRIEVPLSTYAFCIADPYGVLKEDEVHFGFSNNWRDGK 880
Query: 767 SKDQSFFHRVDDKTSIVKG-KVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQK 825
+ + ++ G VLV + P P D++ +AV++ +L + + D I+FP
Sbjct: 881 GQFEDI---------LLDGIDVLVGRLPAHLPSDIQRRKAVWKSEL--RHFKDVIVFPSV 929
Query: 826 GERPHPNECSGGDLDGDIFFISWDNDLIPCETE---PPMDYTGRRSRIMDHDVTLEEIHK 882
G P + SGGD DGD +I WD +++ P +++ + + V +++I
Sbjct: 930 GSIPLAHMLSGGDYDGDTPWICWDQNIVQNFNNSKLPDIEFPAEHYGLTKYAVGMKDIQS 989
Query: 883 F-------FVDYMINDTLGAISTAH--LVHADR-DPDKARSSKCL--HLATLHSMAVDFA 930
F + LG + H + + D D DKA+ CL HL V +
Sbjct: 990 MDEFLQSSFTFNLTLSNLGRCTVEHEKIAYDDSIDSDKAKELACLLSHLVDGRKAGVHLS 1049
Query: 931 -KTGAPAEMPLALKPKEFPDFMEREDKPR------YISFGVLGKLYRATLDSIMQIRSNA 983
K ++ +E P + KP+ Y+ F V + L+ + A
Sbjct: 1050 EKAWQQYRKKISPWARELPAYKNPRRKPKKSNVIDYLRFEVATQERHKMLEKL-----EA 1104
Query: 984 IWSEKIAEASYDHDL 998
+ E+ A S D DL
Sbjct: 1105 EFPEEKAPFSKDEDL 1119
>gi|409079756|gb|EKM80117.1| hypothetical protein AGABI1DRAFT_127795 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1114
Score = 72.8 bits (177), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 116/530 (21%), Positives = 214/530 (40%), Gaps = 134/530 (25%)
Query: 513 FNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVE--VTSDGNTYCFSDGIGKISL 570
N+ ++++K A+R S S + +++ I D+ V SD +DG G I+
Sbjct: 371 LNQRQTMAKWASRFALGLSPSILGFTLDEKNIRFIKDIRSNVNSD-----MTDGAGYIT- 424
Query: 571 SFARQVAQKCGLSHT----PSAFQIRYGGYKGVIAVD---RNSFRKLSLRRSMLKFESR- 622
R + QK + H PSA Q+R G KG++ + ++ + LR S++K + R
Sbjct: 425 ---RHLLQKLSVLHNWGNRPSAIQVRVRGSKGLLVENPDVKDESLSIKLRPSLMKIDYRS 481
Query: 623 -----NRMLNVTKWSES-MPCFLNREIISLLSTLGVKDEVF-EAMQQ------------- 662
+R +++ + + P ++ ++I L GVK E E M++
Sbjct: 482 PLDATHRTIDILHAAHARTPTRISTDVIINLYENGVKFESLCELMKRSIDGIIASLINCL 541
Query: 663 ------------QQLILL-------GKMLINREAALDV-----------------LQKLN 686
+ L+ L G ++++R A DV +Q+ N
Sbjct: 542 GDAYDPNTLGSLKALLALWVSYERAGSVIMSRRAREDVALTRINGFSGDVLTKEGVQEPN 601
Query: 687 GVDS--------------------KNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLK 726
G+D + +++ L G+ P P L + + +S
Sbjct: 602 GLDDVLEHSTDWFPDRVSGCPSSLEETIIEFLDSGFHPQTCPVLREKMHKVVRSAISRAV 661
Query: 727 SRCRIYVP--KGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVK 784
I +P G +I D +G L +VF + + + L+ + T I+
Sbjct: 662 ENYTIELPFSAGAWIIP--DPSGCLESNEVFFQCSRSLPALDGTE----------THIIT 709
Query: 785 GKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIF 844
G VL+T++PC P DV+ +A+ +L + Y D II +G R + +GGD DGD
Sbjct: 710 GDVLITRDPCRLPTDVQKWKAIDVPELHQ--YKDVIILSVQGPRRAADWLAGGDYDGDKA 767
Query: 845 FISWDNDLI-------PCETEPPMDYTGR----RSRIMD---------HDVTLEEIHKFF 884
+ W +L+ P +PP++ + ++ + D + E+ K+
Sbjct: 768 KLIWQPELVQDFVNAHPSFADPPLNLDSKFEIENKQVHEFLAEIEGCSEDNKINEVQKYL 827
Query: 885 VDYMINDTL-GAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTG 933
+ + + TL G S H V + K++ +K LA + + +D KTG
Sbjct: 828 LGTLKDFTLVGKYSNFHEVSVYTNGYKSKETKL--LAYMFTTILDGRKTG 875
>gi|327301211|ref|XP_003235298.1| hypothetical protein TERG_04355 [Trichophyton rubrum CBS 118892]
gi|326462650|gb|EGD88103.1| hypothetical protein TERG_04355 [Trichophyton rubrum CBS 118892]
Length = 1302
Score = 72.8 bits (177), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 107/465 (23%), Positives = 170/465 (36%), Gaps = 83/465 (17%)
Query: 533 SKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIR 592
S+ T + ++ E I D D SDG +S S R +A LS P+ FQ R
Sbjct: 608 SRTTATITLRPEEFIYD----DDPRQEKMSDGCAMMSRSLGRAIADSLCLSKVPTCFQGR 663
Query: 593 YGGYKG--VIAVDRNSFRKLSLRR------------------------SMLKFESRNRML 626
G KG V+A D LR + L +
Sbjct: 664 IAGAKGIWVVAKDNRDIHVKGLRHFETERGYWLVINASQLKVQPPPCDTSLMIDKHQLTF 723
Query: 627 NVTKWSES-MPCFLNREIISLLSTLGVKDE-VFEAMQQQQLILLGKMLI---NREAALDV 681
+V+ +S+ P LN + + +L G E + + ++ + L+ AA
Sbjct: 724 DVSSYSQPPQPVHLNTQFLMVLQDRGTNKEYILSLILEEADKFYSEFLLVQNGDSAACRA 783
Query: 682 LQKLNGVDSKNIL---------------VKMLLQ-GYEPNVEPYLSMMLLSHHENQLSDL 725
+ NG D+ + + + MLL G+ P+ ++ + +
Sbjct: 784 WVRQNGGDASSQIPALNESTFSHSLTGRLNMLLDAGFSPSTLAFVRRLFKEYSLGGFVQK 843
Query: 726 KSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKG 785
+I P+ + D G+L GQV + + + E D T +
Sbjct: 844 LEALKIKTPQSTYVYCIPDPYGVLEEGQVHLDLGDSWE-------------DGTTDLDGI 890
Query: 786 KVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFF 845
VLV + P P D++ AV+ L + + IFP KGE P + SGGD DGD +
Sbjct: 891 DVLVARAPAHLPSDIQKCRAVFHPAL--RYLKNVAIFPTKGEVPLASLLSGGDYDGDEVW 948
Query: 846 ISWDNDLI------PCETEP-PMDY----TGRRSRIMDHDVTLEEIHKFFVDYMINDTLG 894
+ WD +++ P P P +Y RR M D +E F+ M + LG
Sbjct: 949 VCWDQEIVKPFVNYPMPDIPEPEEYGLVKVSRRVGDMPFDRFME---YSFIFNMSQNPLG 1005
Query: 895 AISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTG--APAE 937
+ H + S +H + L S D K+G PAE
Sbjct: 1006 LCTNEHERYCYHR-GGIGSPLAIHFSGLLSHLADIRKSGYEYPAE 1049
>gi|325093828|gb|EGC47138.1| RNA-dependent RNA polymerase [Ajellomyces capsulatus H88]
Length = 1387
Score = 72.8 bits (177), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 78/333 (23%), Positives = 135/333 (40%), Gaps = 58/333 (17%)
Query: 561 FSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSFR--------KLSL 612
+DG +S S VA GL P+ FQ R G KGV VD + R L +
Sbjct: 695 MNDGCALMSKSLGMAVASALGLDGHPAIFQARISGAKGVWMVDLDDSRFKTGDRGFWLQI 754
Query: 613 RRSMLK-----------FESRNRMLNVTKWSESM-PCFLNREIISLLSTLGVKDEVFEAM 660
+S LK + V +WS + P LN +++++L G++++ +
Sbjct: 755 TQSQLKIYPAPPHDTKPMDDTQLTFEVVQWSRPLSPASLNMQLLNILQHGGIRNDHIRNL 814
Query: 661 QQQQL---------ILLGKMLINREAALDVLQKLNGVDSK---------------NILVK 696
+Q++ LL + + L ++ + SK +
Sbjct: 815 IRQEMSSFYDEFLRTLLCSSGVECRSWLQKMKWITNESSKRQSKRTDNFFPPQYAEQAIM 874
Query: 697 MLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFV 756
+L G+ P PYL+ + ++ L +LK + +I V + D G+L +V
Sbjct: 875 LLDAGFLPLKLPYLTKIFRRLLQDYLDNLK-KLKITVSQSTFAYCVADPFGVLRPDEV-- 931
Query: 757 RVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDY 816
+ +RE + H +D VL+ + P D++ +VY+ +L +
Sbjct: 932 HLGFSREWEHGSASTELHDID---------VLLARLPAHLATDIQKRRSVYKNEL--RHM 980
Query: 817 VDCIIFPQKGERPHPNECSGGDLDGDIFFISWD 849
D I+FP G+ P + SGGD DGD ++ WD
Sbjct: 981 KDVIVFPTTGDTPLASLLSGGDYDGDQCWVCWD 1013
>gi|397594531|gb|EJK56264.1| hypothetical protein THAOC_23889, partial [Thalassiosira oceanica]
Length = 225
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 74/144 (51%), Gaps = 14/144 (9%)
Query: 835 SGGDLDGDIFFISWDNDLIPCETEPPMDYT-----GRRSRIMDHDVTLEEIHKFFVDYMI 889
SG DLDGD+F ++WD L ++ PMDY+ G+ + ++ L FV +
Sbjct: 2 SGSDLDGDLFAVTWDERLFLRQSLDPMDYSPPPTLGQETPPINDASLLAH----FVGHAK 57
Query: 890 NDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKE-FP 948
ND LG IS L HA A +C+ LA L S+AVDF K+G PA +P LK K P
Sbjct: 58 NDNLGRISMLWLDHAVTKGGGAGCHECVRLAKLASIAVDFPKSGIPATLPDDLKIKSTVP 117
Query: 949 DFMEREDKPRYISF---GVLGKLY 969
RE K SF +LG+LY
Sbjct: 118 RAHWRELK-NNTSFHCNSILGRLY 140
>gi|225557198|gb|EEH05485.1| RNA-dependent RNA polymerase [Ajellomyces capsulatus G186AR]
Length = 1388
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 78/333 (23%), Positives = 135/333 (40%), Gaps = 58/333 (17%)
Query: 561 FSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSFR--------KLSL 612
+DG +S S VA GL P+ FQ R G KGV VD + R L +
Sbjct: 695 MNDGCALMSKSLGMAVASALGLDGHPAIFQARISGAKGVWMVDLDDSRFKTGDRGFWLQI 754
Query: 613 RRSMLK-----------FESRNRMLNVTKWSESM-PCFLNREIISLLSTLGVKDEVFEAM 660
+S LK + V +WS + P LN +++++L G++++ +
Sbjct: 755 TQSQLKIHPAPPHDTKPMDDTQLTFEVVQWSRPLSPASLNMQLLNILQHGGIRNDHIRNL 814
Query: 661 QQQQL---------ILLGKMLINREAALDVLQKLNGVDSK---------------NILVK 696
+Q++ LL + + L ++ + SK +
Sbjct: 815 IKQEMSSFYDEFLRTLLCSSGVECRSWLQKMKWITNGSSKRQPKRTDNFFPSQYAEQAIM 874
Query: 697 MLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFV 756
+L G+ P PYL+ + ++ L +LK + +I V + D G+L +V
Sbjct: 875 LLDAGFLPLKLPYLTKIFRRLLQDYLDNLK-KLKITVSQSTFAYCVADPFGVLRPDEV-- 931
Query: 757 RVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDY 816
+ +RE + H +D VL+ + P D++ +VY+ +L +
Sbjct: 932 HLGFSREWEHGSAGTELHDID---------VLLARLPAHLATDIQKRRSVYKNEL--RHM 980
Query: 817 VDCIIFPQKGERPHPNECSGGDLDGDIFFISWD 849
D I+FP G+ P + SGGD DGD ++ WD
Sbjct: 981 KDVIVFPTTGDTPLASLLSGGDYDGDQCWVCWD 1013
>gi|414588061|tpg|DAA38632.1| TPA: hypothetical protein ZEAMMB73_690745 [Zea mays]
Length = 462
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 84/314 (26%), Positives = 136/314 (43%), Gaps = 56/314 (17%)
Query: 692 NILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNY 751
++L +M+ G P EPYL + LS Q + ++ + + L+G D TG L
Sbjct: 34 SMLERMIHSGI-PLEEPYL-LSRLSFMAKQEMKVFREGKLPIDECYYLMGTTDPTGTLKP 91
Query: 752 GQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKL 811
+V V L+S S G VLV K+P LH GD+ +L A ++
Sbjct: 92 NEVCVI-------LDSGQYS-------------GDVLVFKHPGLHFGDIHILTA-RQIDG 130
Query: 812 EEKDYV----DCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPC------------ 855
EK+++ + I+FP G+R +E + D DGD F++S +N L+
Sbjct: 131 LEKNFIGYSKNAILFPTSGQRSLADEMANSDFDGDEFWVSRNNMLLKTFEKRSEPWVELL 190
Query: 856 ---ETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADR------ 906
ET+ + G + ++ V E ++ N T G L H DR
Sbjct: 191 KLKETQHRLSKPGDLNELILERVLFNEC--LTTMFIPNYTKGLAPDCWLAHMDRLLTEGV 248
Query: 907 DPDKARS--SKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGV 964
D D+ +S + L L+ A+D G ++ L+ K +P FME++ Y S +
Sbjct: 249 DQDEKKSIVENMIKLVDLYYAALD----GHKVDVDRHLRVKAYPHFMEKKGFESYHSSSI 304
Query: 965 LGKLYRATLDSIMQ 978
LG++Y T + I Q
Sbjct: 305 LGRIYDETEEIIAQ 318
>gi|258570921|ref|XP_002544264.1| predicted protein [Uncinocarpus reesii 1704]
gi|237904534|gb|EEP78935.1| predicted protein [Uncinocarpus reesii 1704]
Length = 1348
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 92/377 (24%), Positives = 160/377 (42%), Gaps = 61/377 (16%)
Query: 513 FNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSF 572
+NK + K R+ S + T+VV + D E+ +DG +S S
Sbjct: 647 YNKRQKDCKLFQRLSLALSRTIPTVVVRPGRIVRRKDAEI-------VMNDGCALMSASL 699
Query: 573 ARQVAQKCGLS-HTPSAFQIRYGGYKGVIAVDR---NSFRKLSLRRSMLKFE---SRNRM 625
A ++ GL PS FQ R G KG+ VD N + + S LK + S+ ++
Sbjct: 700 ANEIKSCLGLKDENPSCFQGRIAGAKGIWMVDNADSNGDSWIEISDSQLKIKPHPSKCKI 759
Query: 626 L--------NVTKWSESM-PCFLNREIISLLSTLGVK-DEVFEAMQQQQLI--------- 666
+ V WS + P LN +++ +L GV+ D + E ++++
Sbjct: 760 MLDDYQLTFEVVSWSRELRPVNLNVQLLMVLQHGGVQTDRLKELVRRESSAWYADFKNTI 819
Query: 667 ---LLGKMLINREAALD--VLQKLNGVDSKNILVKMLL--QGYEPNVEPYLSMML---LS 716
++ + I ++ D ++++ ++N +LL G+ P YL +L L
Sbjct: 820 TNEIVSRGWIQKQGLYDRRKTRRIDDFPTENAEQAILLLDSGFHPLRLAYLKELLTTFLK 879
Query: 717 HHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRV 776
+ N+L LK I +P+ D +L +V + + ES + V
Sbjct: 880 DYCNRLDSLK----IRIPESTYAYCIADPYEVLAEDEVHFGFS---KPWESYGYTDLDGV 932
Query: 777 DDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSG 836
D VL+ +NP P D++ AV++ +L + + D I+FP G+ P SG
Sbjct: 933 D---------VLLGRNPAHLPNDIQKRRAVFKKEL--RHFKDVIVFPTVGKVPLAGMLSG 981
Query: 837 GDLDGDIFFISWDNDLI 853
GD DGD ++ WD +L+
Sbjct: 982 GDYDGDQVWVCWDPELV 998
>gi|310799490|gb|EFQ34383.1| RNA-directed RNA polymerase [Glomerella graminicola M1.001]
Length = 1348
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 83/330 (25%), Positives = 141/330 (42%), Gaps = 49/330 (14%)
Query: 560 CFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGV----IAVDRNSFRKLSLRRS 615
+DGIG++S S AR+ GLS PSA Q R G KG+ IA D+ L L S
Sbjct: 658 VMNDGIGRMSRSLARKTRDVLGLSDIPSAIQGRIGPAKGMWLIDIADDKGDLW-LELWPS 716
Query: 616 MLKF-----ESRNRMLNVTKWSES----------MPCFLNR--------EII--SLLSTL 650
K+ + +R L V ++ +P +R E+I SL+ L
Sbjct: 717 QRKWNCDFGDPEHRTLEVRAHAKDPGSACLNIQFLPVLEDRAINKEAMREVIGKSLVDEL 776
Query: 651 G-----VKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKN--ILVKMLLQGYE 703
KD + +Q +Q I + A + + G+ N I+ ++ G++
Sbjct: 777 NRQLEEQKDAMKYPLQFRQWISQTSSTRTQRLAHGHVPYMGGLPESNEEIMNSLIDAGFD 836
Query: 704 PNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTRE 763
P + YL + + + LK + I V L D +L G+V + + ++
Sbjct: 837 PRRQRYLQELAWNLRYSLCESLKKKMSIKVSNSAYLFMVVDFWNVLEEGEVHLCFS-SKF 895
Query: 764 ELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFP 823
+ ++ S H D VLV ++P D++ ++AV++ +L D I+F
Sbjct: 896 QTDTFSDSILHGCD---------VLVARSPAHFVSDIQRVKAVFKPELHT--IKDVIVFS 944
Query: 824 QKGERPHPNECSGGDLDGDIFFISWDNDLI 853
KG P ++ SGGD DGD ++ W+ ++
Sbjct: 945 AKGNVPLADKLSGGDYDGDKAWVCWEPAIV 974
>gi|225683475|gb|EEH21759.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
Length = 1341
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 86/376 (22%), Positives = 147/376 (39%), Gaps = 80/376 (21%)
Query: 517 RSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQV 576
+S K R+ S + T+V+ ++V PD +DG +S S ++
Sbjct: 648 QSDCKLFQRLALGLSRTLSTVVLRREEVIFCPDPPGP------VMNDGCALMSRSLGLEI 701
Query: 577 AQKCGLSHTPSAFQIRYGGYKGVIAVDRNSFRKLSLRRSMLKFESRNRMLNVTKW----- 631
+ L P+ +Q R G KG+ VDR+ R K R+ L +T+
Sbjct: 702 KRILDLETLPACYQGRISGAKGIWMVDRDDSR--------FKGGDRDFGLEITESQLKIM 753
Query: 632 -SESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDS 690
+ + LN +++ +L GV + + Q++ + K L V+ NGV
Sbjct: 754 VAATQSFLLNLQVLKVLQHGGVGHSHIKKLIHQEVSIFYKEF------LKVIHLSNGVAC 807
Query: 691 KNILVKM--------------------------------LLQGYEPNVEPYLSMMLLSHH 718
+ L KM L G+ P PYL+ +
Sbjct: 808 RKWLQKMKRFGDDGYSYKRQTRRIDNFFPSQYVEQAVLLLDSGFLPLKLPYLTQLFRRIL 867
Query: 719 ENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDD 778
++ L L+ + ++ V + D G+L+ +V F H+ DD
Sbjct: 868 KDYLDSLR-KLKVSVSQSTYAYCIADPLGVLSPDEVHF--------------GFSHKWDD 912
Query: 779 KTSIVKGK-----VLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNE 833
+ +V + VLV + P P D++ AVY+ +L + + D I+FP G+ P +
Sbjct: 913 GSVVVGTELHDMNVLVARLPAHLPTDIQKRRAVYKNEL--RHFKDVIVFPTTGDVPLASL 970
Query: 834 CSGGDLDGDIFFISWD 849
SGGD DGD ++ WD
Sbjct: 971 LSGGDYDGDQCWVCWD 986
>gi|358369575|dbj|GAA86189.1| RNA-directed RNA polymerase [Aspergillus kawachii IFO 4308]
Length = 1306
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 112/477 (23%), Positives = 189/477 (39%), Gaps = 75/477 (15%)
Query: 514 NKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFA 573
N +++ K R S + T+V+ + V +PDV + +DG +S S A
Sbjct: 586 NLMQTNCKLFQRFSLALSKTYATVVLHPRQVLPLPDV------SKPVMNDGCALMSRSLA 639
Query: 574 RQVAQKCGLS-HTPSAFQIRYGGYKGVIAVDRN--------------SFRKLSLRRSMLK 618
Q+ GL+ +TPSAFQ R G KG+ VD++ S +L +R +
Sbjct: 640 NQICDSLGLTGYTPSAFQGRIAGAKGLWMVDKHRSHVTADDDVWIQISDSQLKIRPHPHE 699
Query: 619 FES----RNRMLNVTKWSESM-PC-----FLN--------REIISLLSTLGVKD--EVFE 658
++ V KWS+ + P LN R ++ L+ LG++ + F
Sbjct: 700 WDGSVDDEKLTFEVVKWSKPLHPVNQTIQLLNILDHGGHIRGHLADLTRLGIQSLYQEFA 759
Query: 659 AMQQQQLILLGKMLIN--REAALDVLQKLNG---------VDSKNILVKMLLQGYEPNVE 707
+ + +L + L+ R + D +++ + ++++ G+ P
Sbjct: 760 DVLESDSAVLCRSLVQKIRPSGDDGFGRVSQRTWRFENWMSNDAEFIIRLTEAGFCPRSF 819
Query: 708 PYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQV-FVRVTMTREELE 766
+L L L RI VP D G+L +V F + R+
Sbjct: 820 HFLRKRLGKCLRELLKRHVDELRIEVPLSTYAFCIADPYGVLKEDEVHFGFSNVWRDGKG 879
Query: 767 SKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKG 826
+ +D VLV + P P D++ AV++ +L + + D I+FP G
Sbjct: 880 QFEDILLDGID---------VLVGRLPAHLPSDIQRRTAVWKQEL--RHFKDVIVFPSVG 928
Query: 827 ERPHPNECSGGDLDGDIFFISWDNDLI--------PCETEPPMDYTGRRSRIMDHDV-TL 877
P + SGGD DGD +I WD +++ P PP Y + + D+ ++
Sbjct: 929 NIPLAHMLSGGDYDGDTPWICWDQNIVRNFYNSGLPDTEFPPEHYGLTKYAVDMKDIQSM 988
Query: 878 EE-IHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTG 933
+E + F + LG + H + A D + S K LA L S VD K G
Sbjct: 989 DEFLQSSFTFNLTLSNLGRCTVEHEMIA-YDEESIDSDKAKELACLLSHLVDGRKAG 1044
>gi|238505018|ref|XP_002383738.1| RNA-directed RNA polymerase, putative [Aspergillus flavus NRRL3357]
gi|220689852|gb|EED46202.1| RNA-directed RNA polymerase, putative [Aspergillus flavus NRRL3357]
Length = 1131
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 104/456 (22%), Positives = 181/456 (39%), Gaps = 77/456 (16%)
Query: 534 KQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLS-HTPSAFQIR 592
K + ++P+++ E P +DG +S S A ++ G++ TPSAFQ R
Sbjct: 440 KPSQILPLEEPEGTP-----------VMNDGCALMSRSLASRICDSLGITGATPSAFQGR 488
Query: 593 YGGYKGVIAVDRN-------SFRKLSLRRSMLKF-----------ESRNRMLNVTKWSES 634
G KG+ VD++ S + + S LK + V KWS+
Sbjct: 489 IAGAKGLWMVDKHNSTISTESDVWIQISDSQLKIKPHPAGWQEPVDEEKLTFEVVKWSKP 548
Query: 635 MPCF-LNREIISLLSTLG-VKD--------------EVFEAMQQQQLILLGKMLINR--- 675
+ LN +++++L G +K+ E F + Q +L + LI +
Sbjct: 549 LHTVDLNTQLLAILEHGGHIKEYVAGLTRAGIRAVYEDFATVVQSDSPVLCRSLIQKMKP 608
Query: 676 ---EAALDVLQKLNGV-----DSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKS 727
++ +L K+ + D +V++ G+ P L L L
Sbjct: 609 SAESSSAAMLHKVRRMEEWMADDVEAVVRLTEAGFAPRTFRPLRKRLRKCLIGLLDQYVE 668
Query: 728 RCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESK-DQSFFHRVDDKTSIVKGK 786
+ I VP D G+L +V + + E + + + +D
Sbjct: 669 QLHIEVPLSTYAFCIADPYGVLKEDEVHFGFSSNWRDPEGQFEDNLLDGMD--------- 719
Query: 787 VLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFI 846
VLV + P P D++ AV+ K E + + D I+FP G P + SGGD DGD ++
Sbjct: 720 VLVARLPAHVPSDIQRRRAVW--KPELRHFKDVIVFPTVGTTPLAHMLSGGDYDGDTTWV 777
Query: 847 SWDNDLIP---CETEPPMDYTGRRSRIMDHDVTLEEIHKF--FVD--YMINDTLGAISTA 899
WD +++ M+Y + +H+V +++I + F+ + N T+ +
Sbjct: 778 CWDQNIVQKFRNSDLSTMEYPAEHFGLEEHNVPMKDIDSWDEFLQSTFTFNLTMSNLGRC 837
Query: 900 HLVHADRDPDKA-RSSKCLHLATLHSMAVDFAKTGA 934
+ H D++ S LA L S VD K GA
Sbjct: 838 TVEHEKISYDESIDSPNAKELACLLSHLVDGRKGGA 873
>gi|218187686|gb|EEC70113.1| hypothetical protein OsI_00772 [Oryza sativa Indica Group]
Length = 1155
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 98/376 (26%), Positives = 161/376 (42%), Gaps = 52/376 (13%)
Query: 600 IAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEA 659
I RN+ + LS +S+ FE V+ + +R +I+LL GV +E F
Sbjct: 665 IVSARNAKKSLSGVQSVNSFEI------VSTSNRPRRTLTSRFLITLLCYGGVPEEYFLE 718
Query: 660 MQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHE 719
+ Q + + E AL + ++ ++ +M+L G P E YL L +
Sbjct: 719 LLQSAIEGAENACYDYEDALRIAFSYADMED-SMSARMILSGI-PLEESYLQHRLDFMAQ 776
Query: 720 NQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDK 779
+ +K + +I + + L+ D TG L +V V + +
Sbjct: 777 QERKGIK-QGKIPIDECYYLMDTTDPTGTLRPNEVCVIL--------------------E 815
Query: 780 TSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVD----CIIFPQKGERPHPNECS 835
G VLV K+P LH GD+ VL+A Y L EK+YV I+FP G R +E +
Sbjct: 816 NGQFSGDVLVYKHPGLHFGDIHVLKATYIRDL-EKEYVGYAKYAILFPISGPRSLADEMA 874
Query: 836 GGDLDGDIFFISWDNDLI----PCE--TEPPMDYTGRRSRIMD-HDVTLEEI--HKFF-V 885
D DGDI+++S + L+ P E + ++ + D ++ LE + H+F
Sbjct: 875 NSDFDGDIYWVSKNPKLLEHFKPSEPWVQAIKPKKTKQKKPQDCNESKLERLLFHEFLKT 934
Query: 886 DYMINDTLGAISTAHLVHADR--------DPDKARSSKCLHLATLHSMAVDFAKTGAPAE 937
+ + LG + + L + DR K K + L L+ +A+D KTG
Sbjct: 935 RFTPSFALGTAADSWLAYMDRLLTDSLDEIEKKLIEEKMIKLVDLYYLALDAPKTGNKVN 994
Query: 938 MPLALKPKEFPDFMER 953
+P L K++P FM R
Sbjct: 995 IPSDLMVKQYPHFMGR 1010
>gi|429856861|gb|ELA31752.1| RNA-dependent RNA polymerase [Colletotrichum gloeosporioides Nara
gc5]
Length = 1365
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 83/355 (23%), Positives = 156/355 (43%), Gaps = 47/355 (13%)
Query: 560 CFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVD-RNSFRKL------SL 612
+DGIG++S A+++ GL PSA Q R+G KG+ +D +++ L S
Sbjct: 677 VMNDGIGRMSPKLAQKIKNVLGLQDIPSAIQGRFGPAKGMWLIDIQDTGDDLWIETWPSQ 736
Query: 613 RRSMLKF-ESRNRMLNV-TKWSESMPCFLNREIISLLSTLGVK-------------DEVF 657
R+ + + +R L + + +E LN + + +L V DE+
Sbjct: 737 RKWNCDYLDPEHRTLEIKSHAAEPRSASLNIQFLPVLEDRAVDKPGMRKAIGDSLVDELN 796
Query: 658 EAMQQQQLIL---------LGKMLINREAAL--DVLQKLNGV-DSKNILVKMLLQG-YEP 704
++ Q+ + + + I R+ L + + L G+ DS + L+ G +EP
Sbjct: 797 RELEGQKNAMKYPVQFRQWVNENSIGRKQRLIHNSVPFLAGLPDSNEETMNFLIDGGFEP 856
Query: 705 NVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREE 764
+ + ++ + + + +LK + I +P D G+L +V + + ++ +
Sbjct: 857 SKQKFIQDIAWNLRRQKCENLKKKMSIKIPNSAYFYMVIDFWGVLEENEVHLCFS-SKFQ 915
Query: 765 LESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQ 824
ES S H D VLV ++P DV+ ++AV++ +L D I+F
Sbjct: 916 TESFSDSMLHGCD---------VLVARSPAHFVSDVQRVKAVFKPELHA--LKDVIVFSA 964
Query: 825 KGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEE 879
KG+ P ++ SGGD DGD ++ W+ ++ + + SR + D TL E
Sbjct: 965 KGDIPLADKLSGGDYDGDKAWVCWEPAIVSNFVNANVPPSPDLSRYLKKDKTLYE 1019
>gi|115435090|ref|NP_001042303.1| Os01g0197900 [Oryza sativa Japonica Group]
gi|56201770|dbj|BAD73220.1| unknown protein [Oryza sativa Japonica Group]
gi|56201877|dbj|BAD73327.1| unknown protein [Oryza sativa Japonica Group]
gi|113531834|dbj|BAF04217.1| Os01g0197900 [Oryza sativa Japonica Group]
Length = 387
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 101/219 (46%), Gaps = 26/219 (11%)
Query: 785 GKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVD----CIIFPQKGERPHPNECSGGDLD 840
G VLV K+P LH GD+ VL+A Y L EK+YV I+FP G R +E + D D
Sbjct: 26 GDVLVYKHPGLHFGDIHVLKATYIRDL-EKEYVGYAKYAILFPISGPRSLADEMANSDFD 84
Query: 841 GDIFFISWDNDLI----PCETEPPMDYTGRRSRIMDHDVT---LEEI--HKFF-VDYMIN 890
GDI+++S + L+ P E + + D LE + H+F + +
Sbjct: 85 GDIYWVSKNPKLLEHFKPSEPWVQAIKPKKTKQKKPQDCNESKLERLLFHEFLKTRFTPS 144
Query: 891 DTLGAISTAHLVHADR--------DPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLAL 942
LG + + L + DR K K L L L+ +A+D KTG +P L
Sbjct: 145 FALGTAADSWLAYMDRLLTDSLDEIEKKLIEEKMLKLVDLYYLALDAPKTGNKVNIPSDL 204
Query: 943 KPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRS 981
K++P FM R Y S +LG++Y D + +RS
Sbjct: 205 MVKQYPHFMGRSFS--YHSSSILGQIYDKAED-VESLRS 240
>gi|242207403|ref|XP_002469555.1| predicted protein [Postia placenta Mad-698-R]
gi|220731359|gb|EED85204.1| predicted protein [Postia placenta Mad-698-R]
Length = 1264
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 83/174 (47%), Gaps = 19/174 (10%)
Query: 694 LVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQ 753
++++L G++P P L L +++ D +I VP+ D G+L +
Sbjct: 790 VLELLQAGFQPLKLPLLYEKLRKVVADRIEDYIRNYKIAVPRSAEAFIIPDPYGVLEESE 849
Query: 754 VFVRVTMT-REELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLE 812
+ + T ++ LE + +I+ G VL+ +NP P DVR ++AV KL+
Sbjct: 850 IHFKSTQNLQDPLE----------ESNPTIITGDVLIYRNPTRVPSDVRKVKAVSHPKLD 899
Query: 813 EKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI------PCETEPP 860
+ YV+ I+ P KG R N +GGD+DGD+ +D DL+ P PP
Sbjct: 900 K--YVNVIVLPVKGSRSLANILAGGDVDGDVCTCIFDPDLVDSFENSPINDPPP 951
>gi|346978355|gb|EGY21807.1| RNA-dependent RNA polymerase [Verticillium dahliae VdLs.17]
Length = 1394
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 79/337 (23%), Positives = 139/337 (41%), Gaps = 58/337 (17%)
Query: 562 SDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSFRK----LSLRRSML 617
+DG+ ++S A+ +A+ GL+ TPSA+Q R+G KGV V + K + S
Sbjct: 659 NDGVAEMSPKAAKAIAEYLGLTDTPSAYQGRFGSAKGVWIVGTDPENKDDFEIETYPSQR 718
Query: 618 KFE-----SRNRMLNVTKWSESMP---CFLNREIISLLSTLGVKDEVFEAMQQQQLILLG 669
K+E +R V +E+ P LN + I +L VK + + +
Sbjct: 719 KWECDFWDEDHRTFEVK--TEARPLRAANLNMQFIPVLVNGDVKRGTDKHRMRNAIAKCL 776
Query: 670 KMLINREAALDVLQKLNGVDSKNILVKMLLQGYE---------------PNVEPYLSMML 714
+ + E A + V + + + QGY P+ E +L
Sbjct: 777 RTTLKEELARQRSSMDDPVQFRQWIHESFFQGYRNDRLRDQNIRFLAGLPDNEAERVNLL 836
Query: 715 L--SHHENQLSDLKS--------RCRIYVPKGRLLIGC-------FDETGILNYGQVFVR 757
L +LS L+ +C + K + +GC D G+L G++ +
Sbjct: 837 LDAGFQPKKLSFLREMSYKMAFRKCELLKSKMNIKVGCSTYAKMVVDFKGVLEEGEIHLG 896
Query: 758 VTMTREELESK-DQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDY 816
+ + + + + H +D VLV + P P D++ + AV+ +L +
Sbjct: 897 FSTKFMDPDGQFSDTLLHGMD---------VLVARAPAHFPSDIQRVRAVFRPEL--RHL 945
Query: 817 VDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI 853
D I+F KG+ P + SGGD DGD ++ WD+ ++
Sbjct: 946 KDVIVFSIKGDSPLADLLSGGDYDGDQAWVCWDSTIV 982
>gi|384496670|gb|EIE87161.1| hypothetical protein RO3G_11872 [Rhizopus delemar RA 99-880]
Length = 1225
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 73/279 (26%), Positives = 129/279 (46%), Gaps = 48/279 (17%)
Query: 680 DVLQKLNGVDSKN--ILVKMLLQGYE-PNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKG 736
D + K +G S ++V++L G++ NV +++ + + + ++ LKS+ +I + +
Sbjct: 683 DHINKYSGYPSNGHEVVVRLLDSGFDLSNV--FVATRISNIFKQLMAPLKSKYKIEIEQS 740
Query: 737 RLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSI----VKGKVLVTKN 792
+ D GIL +V+++++ +VD+KT I + G V+V +N
Sbjct: 741 CTVTCIPDPIGILEPDEVYLQLST-------------RKVDEKTGIRAGLILGDVVVARN 787
Query: 793 PCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDL 852
PC DV+ ++A+ L + Y D IIF KGE ++ GGD DGD+ F WD +
Sbjct: 788 PCGLKSDVQKVKAIDCPAL--RMYTDLIIFSTKGESSLASKLGGGDYDGDLVFCCWDQRI 845
Query: 853 I-PCETEPPMDYTGRRSRIMDHDVTL--EEIHKF----------FVDYMIND-TLGAIST 898
+ P P + R ++ + D T ++I F F+ + D TLG
Sbjct: 846 VEPFTASPVVKELERVAQAFEKDKTTVGQQIGSFADTEKALQSHFIKAQMPDGTLGLYEN 905
Query: 899 AHLVHADR----DPDKARSSKCLHLATLHSMAVDFAKTG 933
V A++ DPD + +LA + + VD K G
Sbjct: 906 WRTVLAEKSSLDDPDVS------YLAQMCARLVDAPKQG 938
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 109/238 (45%), Gaps = 44/238 (18%)
Query: 487 LRNNSVWMFASN----DEVSAEDVRGWMGCF--NKIRSVSKCAARMGQLFSSSKQTLVVP 540
+++N++ FA+ + +S + V W N S+SK A+RM +SSS T+
Sbjct: 390 IKDNALIFFATEGTDLEPISIQQVIDWHMPIIENWGMSMSKYASRMSLGYSSSIPTIQFE 449
Query: 541 VQDVEMIPDV----EVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGY 596
++E I D+ T D + C +DG G IS + R++ P A Q R G
Sbjct: 450 PSEIEYIDDIYSTISTTKDASA-CMTDGCGIISCAAMREIMGCQATDRLPCAIQGRIAGA 508
Query: 597 KGV--IA--VDRNSFRKLSLRRSMLKFES-----------RNRMLNVTKWSESM-PCFLN 640
KGV IA +D NS + + +R+S KF++ + ++ K S + P LN
Sbjct: 509 KGVWIIAPDLDFNSGKYIKIRKSQDKFKTGLPQADSHLDPHHYTFDLVKNSICIYPSNLN 568
Query: 641 REIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKML 698
+ I +L+ GV +VF + +LG + L +L V +KN VK+L
Sbjct: 569 IQFIQVLAAGGVPTKVF-------VEILG----------EYLHRLATVVTKNQNVKIL 609
>gi|121713002|ref|XP_001274112.1| RNA-directed RNA polymerase, putative [Aspergillus clavatus NRRL 1]
gi|119402265|gb|EAW12686.1| RNA-directed RNA polymerase, putative [Aspergillus clavatus NRRL 1]
Length = 1313
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 131/595 (22%), Positives = 231/595 (38%), Gaps = 102/595 (17%)
Query: 514 NKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFA 573
N+ +S K R+ S + T+++ + + DV N +DG +S A
Sbjct: 593 NRNQSNCKLFQRISLGLSKTYATIILKPWQILHLKDVP-----NRPVMNDGCALMSRGLA 647
Query: 574 RQVAQKCGLS-HTPSAFQIRYGGYKGVIAVDRNSFRK--------LSLRRSMLKFESRNR 624
+ G++ +TPS FQ R G KG+ VDR+ + + S LK +
Sbjct: 648 NAICDSLGITGNTPSCFQGRIAGAKGLWMVDRHQSDISVGGDEFWIQVSDSQLKIHPHPQ 707
Query: 625 M-----------LNVTKWSESMPCF-LNREIISLLSTLG-VKDEVFEAMQQ--------- 662
V KWS+ + LN +++++L G ++D + + +
Sbjct: 708 TWREPVDEEKLTFEVVKWSKPLHSVELNTQLLAILEHGGKLRDYIAQLTRTGIQTVYQDF 767
Query: 663 ------------QQLILLGKMLINREAALDV-----LQKLNGVDSKNILVKMLLQGYEPN 705
+ LI K++ + +AL L++ D++ I +++ G+ P
Sbjct: 768 AKVLDSDSPVLCRSLIQKIKLVADDGSALASQRVKHLEQWTANDTEAI-IRLTEAGFAPR 826
Query: 706 VEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREEL 765
L L ++ L+ I VP D G+L +V + +
Sbjct: 827 SFYPLRKRLGRCLQDVLARYVDELHIKVPLSTYAFCIADPYGVLQENEVHFGFSNNWRDA 886
Query: 766 ESKDQSFFHRVDDKTSIVKG-KVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQ 824
+ + + +++ G VLV + P P D++ AV+ K E + + D I+FP
Sbjct: 887 QGQFED---------NLLDGMDVLVGRLPAHVPSDIQRRRAVW--KPELRHFKDVIVFPT 935
Query: 825 KGERPHPNECSGGDLDGDIFFISWDNDLI--------PCETEPPMDY--TGRRSRIMDHD 874
G+ P + SGGD DGD+ +I WD +++ P E PP + T +M
Sbjct: 936 AGDIPLAHMLSGGDYDGDMPWICWDQNMVQDFRNSGLPTEEFPPEHFGLTKHSVPMMQIQ 995
Query: 875 VTLEEIHKFFVDYMINDTLGAISTAH-LVHADRDPDKARSSKCLHLATLHSMAVDFAKTG 933
T E + F + LG + H + D D AR+ + LA L S VD K G
Sbjct: 996 STDEFLQSAFTFNLTMSKLGRCTVEHEKLSYDESIDSARAKE---LACLLSHLVDGRKGG 1052
Query: 934 ------APAEMPLALKP--KEFPDFMEREDKPR------YISFGVLGKLYRATLDSIMQI 979
A + + P +E P + + KP+ Y+ F V K A L ++
Sbjct: 1053 VHLSEQAWQQYRKTISPWVREDPAYKNTQRKPKKENIIDYLKFEVALKEKHAVLKEFERV 1112
Query: 980 RSNAIWSEKIAEASYDHDLE-VDGFEAFLGVAESHKEMYEEEMNALMNYYGASTE 1033
E+ YD D + V + A+ K+ + ++ ++NY + E
Sbjct: 1113 FPE-------NESLYDRDDDLVRPWNEAQREAQIEKQGSDGQLPVVLNYASSKVE 1160
>gi|340959153|gb|EGS20334.1| RNA polymerase-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 1441
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 84/330 (25%), Positives = 141/330 (42%), Gaps = 47/330 (14%)
Query: 561 FSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVI---AVDRNSFRKLSLRRSML 617
+DGIG++S S AR++ GL+ PSA Q R G KG+ D + + S
Sbjct: 706 MNDGIGRMSRSVARKIRDALGLTDIPSAIQGRMGSAKGMWLMDVADTSDEDWIETYPSQR 765
Query: 618 KF-----ESRNRMLNV-TKWSESMPCFLNREIISLLSTLGVKDEV--------------- 656
K+ + +R L V + +E P LN + + +L KD+
Sbjct: 766 KWHCNWNDPAHRTLEVRSVPTELKPAGLNLQFLPILEA-QAKDKAQMRYAIGERLKKDLE 824
Query: 657 --FEAMQQQQL--ILLGKMLINREAALDVLQKLNG--------VDSKN-ILVKMLLQGYE 703
FE +Q+ L L + +N + + + NG +SK+ L +L G++
Sbjct: 825 TQFE-LQKSALNHPLKFRQWVNEDWSSRSERVRNGQVLFLGGLPESKHETLFFLLNSGFD 883
Query: 704 PNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTRE 763
P + YL + + LK++ I V + + D G+L +V + +
Sbjct: 884 PKKQKYLQKLAWELQYQRCELLKTKLNIKVGRSAYVYMVVDFWGMLEENEVHLGFSSRFC 943
Query: 764 ELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFP 823
DQ F T + VLV ++P DV+ + AV++ +L D I+FP
Sbjct: 944 ANTDLDQESF------TLLADCDVLVARSPAHFVSDVQKVRAVFKPELHA--LKDVIVFP 995
Query: 824 QKGERPHPNECSGGDLDGDIFFISWDNDLI 853
KG ++ SGGD DGD+ ++ WD D++
Sbjct: 996 LKGNVALADKLSGGDYDGDMAWVCWDPDIV 1025
>gi|299747734|ref|XP_001837224.2| hypothetical protein CC1G_00360 [Coprinopsis cinerea okayama7#130]
gi|298407654|gb|EAU84841.2| hypothetical protein CC1G_00360 [Coprinopsis cinerea okayama7#130]
Length = 1039
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 89/200 (44%), Gaps = 24/200 (12%)
Query: 694 LVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQ 753
++ +L G+ P P L+ L + ++S L RI VP + + D+ GIL G+
Sbjct: 528 VLALLQSGFHPGFCPVLAEKLKAVIRTRVSRLTHSYRIEVPMSCMAMIVPDKRGILKEGE 587
Query: 754 VFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVR--VLEAVYEMKL 811
+F R S + R +KT I+ G VL+T+ PC P D++ +AV L
Sbjct: 588 IFFR---------SSHRDLLDRDGEKTDIITGDVLITRYPCKLPTDIQKASCKAVDHPGL 638
Query: 812 EEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIP-------CETEPPMDYT 864
D V II KG R + GGD DGD I W ++ C +PP
Sbjct: 639 H--DLVGVIILSTKGTRRAADFIGGGDYDGDKAMIIWHPPMVEAFTPKNQCFADPP--EP 694
Query: 865 GRRSRIMD--HDVTLEEIHK 882
G + + D H+V + E ++
Sbjct: 695 GFKEKYFDSGHNVPVAEFYR 714
>gi|302413491|ref|XP_003004578.1| RNA-dependent RNA polymerase [Verticillium albo-atrum VaMs.102]
gi|261357154|gb|EEY19582.1| RNA-dependent RNA polymerase [Verticillium albo-atrum VaMs.102]
Length = 99
Score = 70.5 bits (171), Expect = 6e-09, Method: Composition-based stats.
Identities = 34/89 (38%), Positives = 51/89 (57%)
Query: 814 KDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDH 873
+D +CI+F Q G++ P++ SGGDL+GD + I WD P DY+ ++
Sbjct: 11 RDLRNCIVFSQHGDQDLPSQLSGGDLNGDQYNIIWDRQACPKRFFASADYSRITPTELNR 70
Query: 874 DVTLEEIHKFFVDYMINDTLGAISTAHLV 902
VT + FFVD+M +D LG I+T HL+
Sbjct: 71 QVTRDGKAGFFVDFMKSDMLGMITTEHLI 99
>gi|389740949|gb|EIM82139.1| hypothetical protein STEHIDRAFT_161484 [Stereum hirsutum FP-91666
SS1]
Length = 1302
Score = 70.5 bits (171), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 123/547 (22%), Positives = 208/547 (38%), Gaps = 111/547 (20%)
Query: 460 SRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDE----------------VSA 503
SR+ ++I D+ Y AF AS+ +N FAS +E +S
Sbjct: 384 SRVYEFCMRPLIIFDRVYR--AFYASKDQN---VFFASTNETFINGEVVTIPETSRRLSL 438
Query: 504 EDVRGWMGC--FNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYC- 560
+ W N ++++K AAR+ S+S + + + P++ ++S N
Sbjct: 439 HSLLQWHNPIELNSNQTIAKWAARIPLGLSNSVPGPKLECNQIRLEPEI-ISSSWNPSMG 497
Query: 561 --------FSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVD--------- 603
+DG G I+ + +++ P A Q+R G KG++
Sbjct: 498 PKPPSEMEMTDGCGFINQTALQELHSNKFWDSIPVAIQVRVAGNKGLLTRHPSNDANYLK 557
Query: 604 ------RNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCF-LNREIISLLSTLGVKDEV 656
R S K+ L E R ++V + S ++E++ + GV E+
Sbjct: 558 YPCIWVRPSQTKIHYSDQDLAHEPAKRTIDVLRASHMRSGIQASKEVLVNFAENGVPHEI 617
Query: 657 F-----EAMQQ--QQLILLGKML----------------INREAALDVLQKLNGVD---- 689
E++++ +QL+ ML + REAA + ++ G
Sbjct: 618 LSRRMRESLEELMEQLLQWDDMLQLYRLVFKEGGILGARMAREAAGEA--RVRGYRAYDN 675
Query: 690 -----------SKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRL 738
S+ + L G+ P L+ L + +RC++ +P
Sbjct: 676 EDDDKEEDERISEETVCYFLDSGFTPQNNAILAEKLKEVITKAMKKRIARCKVEIPMSCS 735
Query: 739 LIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPG 798
D TG L G++ +R + L+ +D T V G VLV+++PC P
Sbjct: 736 AWIIPDPTGTLKEGEIHIRSSAP--NLKGQDGQL-------TEQVLGPVLVSRHPCKLPT 786
Query: 799 DVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI----- 853
DV+ + AVY +LE+ YVD I+F KG R + GD DGD WD ++
Sbjct: 787 DVQKVTAVYYSQLEK--YVDVIVFSTKGCRSLASMLGTGDYDGDKVEAVWDPEIAGPFRN 844
Query: 854 --PCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKA 911
P +PP D + T+ E K + A+ A L+ A RDP+
Sbjct: 845 ADPKFADPPPDLM---KNFKKQNETVAEFLKRTEKMSPEQRMEALQ-AVLLGALRDPNVV 900
Query: 912 RSSKCLH 918
C+H
Sbjct: 901 GIYSCMH 907
>gi|302501841|ref|XP_003012912.1| RNA-directed RNA polymerase, putative [Arthroderma benhamiae CBS
112371]
gi|291176473|gb|EFE32272.1| RNA-directed RNA polymerase, putative [Arthroderma benhamiae CBS
112371]
Length = 1125
Score = 70.1 bits (170), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 85/364 (23%), Positives = 143/364 (39%), Gaps = 65/364 (17%)
Query: 533 SKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIR 592
S+ T + ++ E I D D SDG +S S R +A LS P+ FQ R
Sbjct: 330 SRTTATITLRPEEFIYD----DDPRQEKMSDGFAMMSRSLGRAIADSLCLSKVPTIFQGR 385
Query: 593 YGGYKGV--IAVDRNSFRKLSLRR-------------SMLKFESRNRML----NVTKWSE 633
G KG+ +A D LR S LK + ++ +V+ +S+
Sbjct: 386 IAGAKGIWLVAKDDQDIHVKGLRNFETERGYWLVINASQLKVQPPPLVILLTFDVSSYSQ 445
Query: 634 S-MPCFLNREIISLLSTLGV-KDEVFEAMQQQQLILLGKMLINREA---ALDVLQKLNGV 688
P LN + + +L GV K+ + + + + L+ + A + NG
Sbjct: 446 PPQPVHLNIQFLMVLQDRGVNKEYILSLIPDEADKFYSEFLLVQNGDPVACRAWVRKNGG 505
Query: 689 DSKNI----------------LVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRC--- 729
D+ + L +L G+ P+ ++ + EN L +
Sbjct: 506 DASSQIPALNESTFPTNHTAQLNGLLDAGFSPSNLAFVRRLF---KENSLGGFVQKLEAL 562
Query: 730 RIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLV 789
+I +P+ + D G+L GQ+ + + + E D T + VLV
Sbjct: 563 KIKIPQSTYVYCIPDPYGVLEEGQIHLDLGDSWE-------------DGTTDLDGIDVLV 609
Query: 790 TKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWD 849
+ P P D++ AV+ L +V IFP KG+ P + SGGD DGD ++ WD
Sbjct: 610 ARAPAHLPSDIQKCRAVFHPALRYLKHV--AIFPTKGDVPLASLLSGGDYDGDEVWVCWD 667
Query: 850 NDLI 853
+++
Sbjct: 668 QEIV 671
>gi|242208189|ref|XP_002469946.1| predicted protein [Postia placenta Mad-698-R]
gi|220731008|gb|EED84857.1| predicted protein [Postia placenta Mad-698-R]
Length = 1427
Score = 70.1 bits (170), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 102/238 (42%), Gaps = 42/238 (17%)
Query: 691 KNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILN 750
+ +LV +L G++P+ P L+ L + ++ R R+ VP+ D G+L
Sbjct: 636 ETVLV-LLDSGFKPDTCPVLAAKLKEVVKRAINSYVRRYRVDVPQSCTAYIVPDPLGVLE 694
Query: 751 YGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMK 810
GQV ++ +R L +D T IV G+VLVT++PC P DV+ + AV+ K
Sbjct: 695 PGQVHIK--SSRRNLVDQDGR-------PTDIVLGEVLVTRHPCKVPTDVQKVTAVFNQK 745
Query: 811 LEEKDYVDCIIFPQKGE-------RPHPNECS-GGDLDGDIFFISWDNDLI--------- 853
L YVD I+ K H C+ GGD DGD W++DL+
Sbjct: 746 LSS--YVDVIVVSIKDHVSNKKLMNRHLASCTGGGDYDGDTMEAFWNSDLVEGFKNAETK 803
Query: 854 ---------PC---ETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTL-GAIST 898
C TE + R D D+ EI K+ + + + ++ G ST
Sbjct: 804 FLNEPKNVQKCLVKNTETVAQFLSRNPLSTDKDIMQPEIQKYLLGSLRDSSMVGTYST 861
>gi|296817563|ref|XP_002849118.1| RNA-dependent RNA polymerase [Arthroderma otae CBS 113480]
gi|238839571|gb|EEQ29233.1| RNA-dependent RNA polymerase [Arthroderma otae CBS 113480]
Length = 1255
Score = 70.1 bits (170), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 85/375 (22%), Positives = 147/375 (39%), Gaps = 69/375 (18%)
Query: 533 SKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIR 592
S+ T + ++ E+I D +D SDG IS S + + GLS P+ FQ R
Sbjct: 612 SRTTPTITLRPEEVIYD----NDPRQEQMSDGCALISKSLGKAITDSLGLSKVPACFQGR 667
Query: 593 YGGYKGVIAVDR-------NSFRK---------LSLRRSMLK-----------FESRNRM 625
+ G KG+ V R N R+ + + S LK +
Sbjct: 668 FAGAKGIWIVARDDQCPQVNGLRQTFETDRGYWMVINASQLKVKPPPCDRGVLLDKHQMT 727
Query: 626 LNVTKWSES-MPCFLNREIISLLSTLGVKDEVFEAMQQQQL--ILLGKMLINR----EAA 678
+V+ ++ + +LN + + +L G+ E + Q + G + I R A
Sbjct: 728 FDVSSYARTPQSVYLNTQFLMVLQNAGINKEYLSFIIQMEADKFYDGYLEIIRTGDSAAC 787
Query: 679 LDVLQKLNGV-------------DSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDL 725
D ++++ G D+ ++ +L G+ P+ +L + + +N L L
Sbjct: 788 RDWIKRMGGSTAVKATMSDGFPPDTLGQIIMLLDAGFLPSKLYFLRRLFKFYFDNYLQKL 847
Query: 726 KSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKG 785
+I +PK + D G+L G+V + E+ D +D
Sbjct: 848 GD-LKIKIPKSTYVYCIADPYGVLEEGEVHLAPGDNWEDTPDLDG-----ID-------- 893
Query: 786 KVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFF 845
+LV + P P D++ A++ L V IF KG+ P + SGGD DGD +
Sbjct: 894 -ILVARAPAHLPSDIQKCRAIFHPALRHLKGV--AIFSTKGDVPLASLLSGGDYDGDEVW 950
Query: 846 ISWDNDLI-PCETEP 859
W+ L+ P +P
Sbjct: 951 ACWEPGLVNPFRNQP 965
>gi|290980534|ref|XP_002672987.1| predicted protein [Naegleria gruberi]
gi|284086567|gb|EFC40243.1| predicted protein [Naegleria gruberi]
Length = 942
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 99/408 (24%), Positives = 186/408 (45%), Gaps = 61/408 (14%)
Query: 587 SAFQIRYGGYKGVI-AVDRN------------SFRKLSLRRSMLKFESRNRMLN---VTK 630
SA Q+R G KGVI V+++ S K+ LR SM+KFE + N +
Sbjct: 319 SAMQVRILGAKGVIQKVNKSMWAELLKKHKLPSNTKVILRNSMVKFEGNYSIYNKIDILN 378
Query: 631 WSESMPCFLNREIISLLSTLGVKDE----VFEAMQQQQLILLGKMLINREAALDVLQKLN 686
+ +NR I+S L + +E +F+ + QL+ + + N E +VL +
Sbjct: 379 VARVHGGNINRNIMSCLLQMTTNEEEMEKLFKNFYETQLMEIVENKDNPEYLCNVLLSQS 438
Query: 687 GVDSKNILVKMLLQGYEPNVEPYLSMMLL-----SHHENQLSD-LKSRCRIYVPKGRLLI 740
G S+ + + L+ E +++ Y ++ S E+ +SD L +C+ P +
Sbjct: 439 GETSQESIARDLIMA-EHSLDNYFISSVVKDNIESKFESMVSDKLSMKCK--HPGFLSGM 495
Query: 741 GCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDV 800
G +DE+ L + +V + + L+ + ++D KVLV +NP + GD+
Sbjct: 496 GVYDESSTLKHDEVHIPCSKLIRSLD------YAKID--------KVLVYRNPLAYEGDI 541
Query: 801 RVLEAVYEMKLE-EKDYVDCIIF---PQKGERPHP-NECSGGDLDGDIFFISWDNDLIPC 855
+ L+ V E + D I+F P + P P +GGDLDGD++ I +D +++
Sbjct: 542 QCLKLVKHPPTEFLQSRRDVIVFGHNPNYKKVPEPLCYMAGGDLDGDLYEIIFDPEIVKL 601
Query: 856 ---ETEPPMDY-----TGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHL--VHAD 905
+P ++Y T + ++ + + +++E++ K ++ M + IS +L +
Sbjct: 602 FDQNLKPKLNYNDGAATNKVTKTVKNSLSMEDVRKTVLEMM--EQSSKISEVYLKTMCWR 659
Query: 906 RDPDKARSSKCLHLATLHSMAVDFAKTGA-PAEMPLALKPKEFPDFME 952
D K L L+ ++ ++D K A A+ + K+ P +ME
Sbjct: 660 EDSSKVGIDIKLKLSKMYHDSIDTIKGSAFNAKQLYEIPKKDSPKWME 707
>gi|7505900|pir||T23669 hypothetical protein M01G12.12 - Caenorhabditis elegans (fragment)
gi|25395342|pir||F87936 protein M01G12.12 [imported] - Caenorhabditis elegans
Length = 604
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 77/158 (48%), Gaps = 27/158 (17%)
Query: 391 RALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIF 450
+ + TP ++ PE+ N V++NF + + +RVTF +++ K+ ANA + I
Sbjct: 452 KVIFTPTRVIYTPPEMIMGNRVLRNFDRDGTHVLRVTFRDDNNRKMRANATGELLD--IC 509
Query: 451 SKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDE---------- 500
K Y L+ GIV+ ++ + FL S+SQ+R+N + N +
Sbjct: 510 VKKY-----------LEHGIVVANRDFGFLGCSSSQMRDNGAYFMVKNTDNRHKNACKMN 558
Query: 501 ----VSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSK 534
+ + VR +G F +I ++ K AR+GQ F+ S+
Sbjct: 559 SKFKPNIDSVRNQLGNFLQIENIPKLMARLGQCFTQSR 596
>gi|429863502|gb|ELA37949.1| RNA-dependent RNA polymerase, partial [Colletotrichum
gloeosporioides Nara gc5]
Length = 989
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 77/328 (23%), Positives = 130/328 (39%), Gaps = 47/328 (14%)
Query: 561 FSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSFRK-------LSLR 613
+DG+G++SLS AR+V LS PSA Q R G KG+ +D S R
Sbjct: 586 MNDGVGRMSLSLARKVRDVLELSDVPSAIQGRLGSAKGMWIIDVEDTGSDIWIETWPSQR 645
Query: 614 RSMLKF-ESRNRMLNVTKW-SESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLI--LLG 669
+ F +R L + + +E LN + + +L ++ + ++ L
Sbjct: 646 KWNCDFLHQEHRTLEIKDFVAEPRSANLNIQFLPILEDRAKDKQIMRKVVGDNVLRQLSD 705
Query: 670 KMLINREAALDVLQKLNGVDSKNILVKMLLQ------------------------GYEPN 705
++ R A LQ VD + K L G+EP
Sbjct: 706 ELEALRNAIKHPLQFRKWVDENSTARKKRLAHSSVPFLAGLPESKEEQLSYLGDGGFEPT 765
Query: 706 VEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREEL 765
+ ++ M+ + ++ + I +P L D GIL +V V + T
Sbjct: 766 KQKFMQDMMWKLQSKKCENVTKKMSIRIPNSAYLYMVVDFWGILEENEVHVCFSSTFRT- 824
Query: 766 ESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQK 825
E S H D VLV ++P D++ ++AV+ K E + + I+FP K
Sbjct: 825 EGFSDSMLHGCD---------VLVARSPAHLVSDIQRVKAVF--KPELRALKNVIVFPAK 873
Query: 826 GERPHPNECSGGDLDGDIFFISWDNDLI 853
G+ ++ SGGD DG ++ W+ ++
Sbjct: 874 GDVALADKLSGGDYDGGRAWVCWEPAIV 901
>gi|407919378|gb|EKG12628.1| RNA-dependent RNA polymerase eukaryotic-type [Macrophomina phaseolina
MS6]
Length = 1485
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 105/445 (23%), Positives = 174/445 (39%), Gaps = 99/445 (22%)
Query: 561 FSDGIGKISLSFARQVAQKCGLSHT-PSAFQIRYGGYKGVIAV----DRNSFRKL----S 611
+DG IS+ AR++ ++ + PS FQ R GG KG+ + D R L
Sbjct: 723 MNDGCSLISVGAARKLWEQTNRTEPLPSTFQGRIGGAKGMWMISDSPDTTDSRHLKVWIQ 782
Query: 612 LRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKM 671
+ S LKF++ + + +++ +R L ST G A + + +
Sbjct: 783 ISDSQLKFKAHSEDQSESEYDP------HRLTFDLHSTTGT------AGESSVYLSFFPI 830
Query: 672 LINREAALDVLQKL-----------------NGVDSKNILVKMLLQGYEPNVE---PYLS 711
L NR + LQKL N V + L + E N + + +
Sbjct: 831 LENRGVSAKALQKLFESHLDREREKILASVTNRVGLRTWLNQQNSLAEERNRDENMTWQA 890
Query: 712 MMLLSHHE--------------NQLSD------------LKSRCRIYVPKGRLLIGCFDE 745
M L HE + L+D L+ R+ +P+ + G D
Sbjct: 891 SMPLQLHEKAILLAESGFDISCDYLADVAHRLLAKSLRLLRQNIRVPLPRCTYIKGVADP 950
Query: 746 TGILNYGQVFVRVTMTREELESKDQSFFHRVD-DKTSIVKGK-VLVTKNPCLHPGDVRVL 803
G+L G++ V T + F V D S + + VLV +NP L D++ +
Sbjct: 951 LGVLKPGEIHVHFT----------RRFVDEVSGDCLSYLNNRNVLVARNPALRASDIQKV 1000
Query: 804 EAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI-PCETEPPM- 861
+ + ++L D ++FP +G P + GGD DGD F+I W+ +++ P + PP
Sbjct: 1001 RSTFNLRLGH--LKDVVVFPTRGTFPLAGKLQGGDYDGDTFWICWEPEMVEPFKNAPPPL 1058
Query: 862 -DYTGRRSRIM----------DHDVTLEEIHKFFVDYMINDTLGAISTAH--LVHADRDP 908
D ++ +I D E + + F LG + H LV+ +
Sbjct: 1059 EDPDPKKCQIKVDKRKLADMCKGDSISEFLRESFKFRCKPSLLGQATKFHERLVYMEGSL 1118
Query: 909 DKARSSKCLHLATLHSMAVDFAKTG 933
RS LA LH + VD++K G
Sbjct: 1119 ATERSRA---LADLHDLLVDYSKNG 1140
>gi|110738636|dbj|BAF01243.1| hypothetical protein [Arabidopsis thaliana]
Length = 339
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 92/196 (46%), Gaps = 28/196 (14%)
Query: 798 GDVRVLEAVYEMKLEEKDYVD----CIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI 853
GD+ +L+A Y LEE YV + FPQKG R +E +GGD DGD++FIS + +L+
Sbjct: 2 GDIHILKATYVKALEE--YVGNSKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPELL 59
Query: 854 ----PCE-----TEPPMDYTGRRSRIMDHDVTLEE---------IHKFFVDYMINDTLGA 895
P E T P +GR + + EE H V + D+
Sbjct: 60 ENFKPSEPWVSLTPPSKSNSGRAPSQLSPEELEEELFEMFLTAGFHASNVIGIAADSWLT 119
Query: 896 ISTAHLVHA-DRDPDKAR-SSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMER 953
I L+ DR +KA K L L ++ A+D K G +P LKP FP +MER
Sbjct: 120 IMDRFLILGDDRAEEKAEMKKKMLELIDIYYDALDAPKKGDKVYLPNKLKPDIFPHYMER 179
Query: 954 EDKPRYISFGVLGKLY 969
+ K + S +LG ++
Sbjct: 180 DKK--FQSTSILGLIF 193
>gi|391867215|gb|EIT76465.1| hypothetical protein Ao3042_07438 [Aspergillus oryzae 3.042]
Length = 1260
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 102/455 (22%), Positives = 179/455 (39%), Gaps = 77/455 (16%)
Query: 534 KQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLS-HTPSAFQIR 592
K + ++P+++ E P +DG +S A ++ G++ TPSAFQ R
Sbjct: 569 KPSQILPLEEPEGTP-----------VMNDGCALMSRGLASRICDSLGITGATPSAFQGR 617
Query: 593 YGGYKGVIAVDRN-------SFRKLSLRRSMLKF-----------ESRNRMLNVTKWSES 634
G KG+ VD++ S + + S LK + V KWS+
Sbjct: 618 IAGAKGLWMVDKHNSTISTESDVWIQISDSQLKIKPHPAGWQEPVDEEKLTFEVVKWSKP 677
Query: 635 MPCF-LNREIISLLSTLG-VKD--------------EVFEAMQQQQLILLGKMLINR--- 675
+ LN +++++L G +K+ E F + Q +L + LI +
Sbjct: 678 LHTVDLNTQLLAILEHGGQIKEYVAGLTRAGIRAVCEDFATVVQSDSPVLCRSLIQKMKP 737
Query: 676 ---EAALDVLQKLNGV-----DSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKS 727
++ +L K+ + D +V++ G+ P L L L
Sbjct: 738 SAESSSAAMLHKVRRMEEWMADDAEAVVRLTEAGFAPRTFRPLRKRLRKCLIGLLDQYVE 797
Query: 728 RCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESK-DQSFFHRVDDKTSIVKGK 786
+ I VP D G+L +V + + E + + + +D
Sbjct: 798 QLHIEVPLSTYAFCIADPYGVLKEDEVHFGFSSNWRDPEGQFEDNLLDGMD--------- 848
Query: 787 VLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFI 846
VLV + P P D++ AV+ K E + + D I+FP G P + SGGD DGD ++
Sbjct: 849 VLVARLPAHVPSDIQRRRAVW--KPELRHFKDVIVFPTVGTTPLAHMLSGGDYDGDTTWV 906
Query: 847 SWDNDLIP---CETEPPMDYTGRRSRIMDHDVTLEEIHKF--FVD--YMINDTLGAISTA 899
WD +++ M+Y + +H+V +++I + F+ + N T+ +
Sbjct: 907 CWDQNIVQKFRNSDLSTMEYPAEHFGLEEHNVPMKDIDSWDEFLQSTFTFNLTMSNLGRC 966
Query: 900 HLVHADRDPDKA-RSSKCLHLATLHSMAVDFAKTG 933
+ H D++ S LA L S VD K G
Sbjct: 967 TVEHEKISYDESIDSPNAKELACLLSHLVDGRKGG 1001
>gi|302411624|ref|XP_003003645.1| RNA-dependent RNA polymerase [Verticillium albo-atrum VaMs.102]
gi|261357550|gb|EEY19978.1| RNA-dependent RNA polymerase [Verticillium albo-atrum VaMs.102]
Length = 1283
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 80/338 (23%), Positives = 138/338 (40%), Gaps = 58/338 (17%)
Query: 561 FSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSFRK----LSLRRSM 616
+DG+ ++S A+ +A+ GL+ TPSA+Q R+G KGV V + K + S
Sbjct: 658 MNDGVAEMSPKAAKVIAEYLGLADTPSAYQGRFGSAKGVWIVGTDPDNKDDFEIETYPSQ 717
Query: 617 LKFE-----SRNRMLNVTKWSESMP---CFLNREIISLLSTLGVKDEVFEAMQQQQLILL 668
K+E +R V +E+ P LN + I +L VK + + +
Sbjct: 718 RKWECDFWDEDHRTFEVK--TEARPLRAANLNMQFIPVLVNGDVKRGTDKHRMRNAIAGC 775
Query: 669 GKMLINREAALDVLQKLNGVDSKNILVKMLLQGYE---------------PNVEPYLSMM 713
+ + E A + V + + + QGY P+ E M
Sbjct: 776 LRTTLKEELARQRSSMNDPVQFRQWIHENFFQGYRSDRVRDQNIRFLAGLPDNEAERVNM 835
Query: 714 LL--SHHENQLSDLKS--------RCRIYVPKGRLLIGC-------FDETGILNYGQVFV 756
LL +LS L+ +C + K + +GC D G+L G++ +
Sbjct: 836 LLDAGFRPKKLSFLREVSYKMAFRKCELLKSKMNIKVGCSTYAKMVVDFKGVLEEGEIHL 895
Query: 757 RVTMTREELESK-DQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKD 815
+ + + + + H +D VLV + P P D++ + AV+ +L +
Sbjct: 896 GFSTKFMDPDGQFSDTLLHGMD---------VLVARAPAHFPSDIQRVRAVFRPEL--RH 944
Query: 816 YVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI 853
D I+F KG+ P + SGGD DGD ++ WD ++
Sbjct: 945 LKDVIVFSIKGDSPLADLLSGGDYDGDQAWVCWDPAIV 982
>gi|402074256|gb|EJT69785.1| RNA-dependent RNA polymerase [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 1442
Score = 68.2 bits (165), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 91/396 (22%), Positives = 156/396 (39%), Gaps = 68/396 (17%)
Query: 552 VTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSFRK-- 609
++ GN +DG+G +S S A+++ + GL P A Q R G KG+ +D
Sbjct: 725 LSPQGN--VMNDGVGLMSRSVAQKIQKTLGLVTVPCAVQGRLGSAKGMWIIDVEDLSGED 782
Query: 610 -LSLRRSMLKFE-----SRNRMLNV-TKWSESMPCFLNREIISLLSTL------------ 650
+ S K+E R L V + SE LN + + +L
Sbjct: 783 WIETYPSQRKWECDIGDPDQRTLEVRSHASELRSARLNLQFLPVLEDRSRDKDAFRTAVG 842
Query: 651 ------------GVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKN--ILVK 696
G++ + +Q +Q + + + L G K+ ++
Sbjct: 843 DLLGENLQTELGGLRAALNRPIQHRQWVHENSSNRDTRVRHGQVPFLGGSPDKDEELMNM 902
Query: 697 MLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFV 756
ML G++P + YL + + + LK + I V K D G L +V +
Sbjct: 903 MLDHGFDPKKQKYLQDLAWVLQKKKCETLKEKLNITVGKSAYAYMVVDFGGHLEPDEVHM 962
Query: 757 RVTMTREELESKDQSFFHRVDDKTSIVKG-KVLVTKNPCLHPGDVRVLEAVYEMKLEEKD 815
+ S F D +++ G ++LV ++P + D++ ++AV++ L KD
Sbjct: 963 CFS-----------SKFQVDDFADTLLDGIELLVARSPAHYISDIQKVKAVFKPAL--KD 1009
Query: 816 YVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI------PCETEPPMDYTGRRSR 869
D I+FP+KG ++ SGGD DGD ++ WD ++ P P + G S+
Sbjct: 1010 LKDVIVFPRKGRVALADKLSGGDYDGDKAWVCWDQAIVKNFVNSPVPRAPDLFERGYLSK 1069
Query: 870 IMD-----------HDVTLEEIHKFFVDYMINDTLG 894
I D T E I + F+ M + LG
Sbjct: 1070 IKDKMDDLVKEHGLETATSELIERSFLFNMRQNHLG 1105
>gi|169598368|ref|XP_001792607.1| hypothetical protein SNOG_01986 [Phaeosphaeria nodorum SN15]
gi|111069078|gb|EAT90198.1| hypothetical protein SNOG_01986 [Phaeosphaeria nodorum SN15]
Length = 1428
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 117/253 (46%), Gaps = 26/253 (10%)
Query: 695 VKMLLQ-GYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQ 753
K+LL+ G++P P+L+ L + + ++ + R + + LIG D GIL G+
Sbjct: 924 AKLLLRTGFQPYQSPFLARTLKRFVQQRQLWMEEKLRAPLGRATYLIGLADPLGILKPGE 983
Query: 754 VFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEE 813
V V+ ++ L+ ++ + ++ +V++T+ P D++ + AV +L
Sbjct: 984 VHVQ--FSKPFLDEYGRNTYR------NLAGEEVVITRQPACRRSDMQKMRAVSHPQLSH 1035
Query: 814 KDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI--------PCETEPPMDY-- 863
VD ++F +G P + GGD DGD F++ W+ DL+ P P Y
Sbjct: 1036 --LVDVVVFSSRGIYPAAGKLQGGDYDGDTFWVCWEPDLVVPFLNAPAPLNDLEPQKYGI 1093
Query: 864 ---TGRRSRIMD-HDV-TLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLH 918
T + + IM+ HD+ T++ + K +++ + +L +T ++ S +
Sbjct: 1094 KKDTRKLTDIMNPHDLSTVDNLLKEALEFRMTQSLLGKATTFAEKVAYKENRIYSERLNA 1153
Query: 919 LATLHSMAVDFAK 931
L +H + VD K
Sbjct: 1154 LYDVHDLLVDAPK 1166
>gi|327354916|gb|EGE83773.1| hypothetical protein BDDG_06718 [Ajellomyces dermatitidis ATCC
18188]
Length = 1096
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 104/431 (24%), Positives = 176/431 (40%), Gaps = 76/431 (17%)
Query: 561 FSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSFR--------KLSL 612
+DG +S S ++A GL P+ FQ R G KGV VDR+ R L +
Sbjct: 408 MNDGCALMSRSLGMEIACTLGLETVPAIFQGRISGAKGVWMVDRDDSRFRVGDRRFGLQI 467
Query: 613 RRSMLK------FESR-----NRMLNVTKWSESM-PCFLNREIISLLSTLGVKDEVFEAM 660
S LK +++R V +WS + P LN +++++L G++++ +++
Sbjct: 468 TESQLKIHPAPPYDTRPVDDTQLAFEVVQWSRPLSPAALNLQLLNILQHGGIRNDHIKSL 527
Query: 661 QQQQL------ILLGKMLINREAALDVLQKLNGVDSKNI------------------LVK 696
+Q++ L + N A LQK+ + ++ V
Sbjct: 528 IKQEMSSFYDDFLETLRVPNGVACRSWLQKMKRITDESYKRQTKRTSNYFPPQYAEQAVL 587
Query: 697 MLLQGYEPNVEPYLSMM---LLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQ 753
+L G+ P PYL+ + LL + N L +LK R V + D G+L +
Sbjct: 588 LLDAGFLPLKLPYLTELFKRLLHDYLNNLKNLKVR----VSQSTFAYCIADPFGVLKPDE 643
Query: 754 VFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEE 813
V + + E + H +D +L+ + P D++ +VY+ L
Sbjct: 644 VHLGFSSAWEHGSVGTE--LHGID---------ILLARLPAHLSTDIQKRRSVYKNAL-- 690
Query: 814 KDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWD--------NDLIPCETEPPMDYTG 865
+ + D I+FP G+ P + SGGD DGD ++ WD N +T P + G
Sbjct: 691 RHFKDVIVFPTTGDTPLASLLSGGDYDGDQCWVCWDPIIVREFKNTEFDPKTVPSEESLG 750
Query: 866 RR---SRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATL 922
R +RI ++ T + + F + + LG + H + SS + LA L
Sbjct: 751 LRDHSTRISEYVSTEKFLANAFKFNLKSSKLGPCTVEHETFCYHQ-NNINSSLGVKLAWL 809
Query: 923 HSMAVDFAKTG 933
S VD K+G
Sbjct: 810 LSYLVDSRKSG 820
>gi|168064128|ref|XP_001784017.1| RNA-directed RNA polymerase [Physcomitrella patens subsp. patens]
gi|162664466|gb|EDQ51185.1| RNA-directed RNA polymerase [Physcomitrella patens subsp. patens]
Length = 1042
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 120/519 (23%), Positives = 211/519 (40%), Gaps = 99/519 (19%)
Query: 516 IRSVSKCAARMGQLFSSS-KQTLVVPVQDVEMIPDVEVTSDGNTYCF---SDGIGKISLS 571
+ ++SK A+R+ S S L V IPD+ T+ N+ F ++G +IS
Sbjct: 412 VPTMSKFASRLQLALSKSVTANLNWDEIKVRQIPDILSTTLDNSGKFMSHTEGTAEISPD 471
Query: 572 FARQVAQKCGL---SHTPSAFQIRY--------GGY------KGVIAVDRNSFRKLSLRR 614
AR + C + P+ Q R G + KG+ + R S K++
Sbjct: 472 VARLIP--CSVFKGKGYPTLIQGRLFWKGMAIKGTWQVNHQLKGLQILYRPSMVKVTTDA 529
Query: 615 SMLKFESRN--RMLNV-TKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKM 671
++ F + N ++N T + L++++I LLS V F ++ L L
Sbjct: 530 ALKDFPTINSFEIVNTNTCYKLKEEAKLSQDLIFLLSVNNVPASFFLEHVEKALENLHSF 589
Query: 672 LINREAALDVLQKLN-GVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCR 730
R L++ + D + ++M++ P P + L +++++ L+ C
Sbjct: 590 FTTRGQVFRELKRCSQDYDVGDQTLRMIMANI-PMNNPQMQKNLKKISQDKIALLRKGC- 647
Query: 731 IYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVT 790
+ +P+ L+G D T +E + ++ + DK V GKVLV
Sbjct: 648 VPLPQSCYLMGTCDPT---------------KERVLKPNEVAVIKNGDK---VLGKVLVY 689
Query: 791 KNPCLHPGDVRVLEAVYEMKLEEKDYV----DCIIFPQKGERPHPNECSGGDLDGDIFFI 846
KNP H GDV V +AV++ +L YV I F +G RP +E + DLDGD +++
Sbjct: 690 KNPGKHWGDVHVFDAVWDERL--NPYVGPANQTIFFSVRGNRPVVDEIANSDLDGDFYWV 747
Query: 847 SWDNDLIPCETEPPMDYTGRR--------SRIMDHDVTLEEIHKFFVDYMINDTLGA--- 895
++ T +DY + RI D++ F +++ G
Sbjct: 748 CFNTQ----ATNSFLDYFSSKVVFCQLIGVRIAAVDLS------FHSKPTLDENRGEDKL 797
Query: 896 ----------ISTAHLVHADR-----------DPDKARSSKCLHLATLHSMAVDFAKTGA 934
+T + H DR + + S L L + A+D KTG
Sbjct: 798 PGWECKPMPLSATYWIAHMDRYLTLKYADEYSEELELLSETILELIDIFYRALDADKTGE 857
Query: 935 PAEMPLALKPKEFPDFMERED----KPRYISFGVLGKLY 969
++ L+PK +P FM +++ + Y S +LG++Y
Sbjct: 858 EVKLRRGLEPKCYPHFMRKQNQTSRRTYYTSTSILGQIY 896
>gi|261202284|ref|XP_002628356.1| RNA-directed RNA polymerase [Ajellomyces dermatitidis SLH14081]
gi|239590453|gb|EEQ73034.1| RNA-directed RNA polymerase [Ajellomyces dermatitidis SLH14081]
Length = 1382
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 105/437 (24%), Positives = 177/437 (40%), Gaps = 76/437 (17%)
Query: 555 DGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSFR------ 608
D +DG +S S ++A GL P+ FQ R G KGV VDR+ R
Sbjct: 688 DPPPPVMNDGCALMSRSLGMEIACTLGLETVPAIFQGRISGAKGVWMVDRDDSRFGVGDR 747
Query: 609 --KLSLRRSMLK------FESR-----NRMLNVTKWSESM-PCFLNREIISLLSTLGVKD 654
L + S LK +++R V +WS + P LN +++++L G+++
Sbjct: 748 RFGLQITESQLKIHPAPPYDTRPVDDTQLAFEVVQWSRPLSPAALNLQLLNILQHGGIRN 807
Query: 655 EVFEAMQQQQL------ILLGKMLINREAALDVLQKLNGVDSKNI--------------- 693
+ +++ +Q++ L + N A LQK+ + ++
Sbjct: 808 DHIKSLIKQEMSSFYDDFLETLRVPNGVACRSWLQKMKRITDESYKRQTKRTSNYFPPQY 867
Query: 694 ---LVKMLLQGYEPNVEPYLSMM---LLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETG 747
V +L G+ P PYL+ + LL + N L +LK R V + D G
Sbjct: 868 AEQAVLLLDAGFLPLKLPYLTELFKRLLHDYLNNLKNLKVR----VSQSTFAYCIADPFG 923
Query: 748 ILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVY 807
+L +V + + E + H +D +L+ + P D++ +VY
Sbjct: 924 VLKPDEVHLGFSSAWEHGSVGTE--LHGID---------ILLARLPAHLSTDIQKRRSVY 972
Query: 808 EMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWD--------NDLIPCETEP 859
+ L + + D I+FP G+ P + SGGD DGD ++ WD N +T P
Sbjct: 973 KNAL--RHFKDVIVFPTTGDTPLASLLSGGDYDGDQCWVCWDPIIVREFKNTEFDPKTVP 1030
Query: 860 PMDYTGRR---SRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKC 916
+ G R +RI ++ T + + F + + LG + H + SS
Sbjct: 1031 SEESLGLRDHSTRISEYVSTEKFLANAFKFNLKSSKLGPCTVEHETFCYHQ-NNINSSLG 1089
Query: 917 LHLATLHSMAVDFAKTG 933
+ LA L S VD K+G
Sbjct: 1090 VKLAWLLSYLVDSRKSG 1106
>gi|326483110|gb|EGE07120.1| RNA-directed RNA polymerase [Trichophyton equinum CBS 127.97]
Length = 1286
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 81/357 (22%), Positives = 137/357 (38%), Gaps = 56/357 (15%)
Query: 533 SKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIR 592
S+ T + ++ E I D D SDG +S S R +A LS P+ FQ R
Sbjct: 604 SRTTATITLRPEEFIYD----DDPRQEKMSDGFAMMSRSLGRAIADSICLSKVPTCFQGR 659
Query: 593 YGGYKGVIAVDRN-------SFRKLSLRR-------------------SMLKFESRNRML 626
G KGV V ++ R R + L F+
Sbjct: 660 IAGAKGVWVVAKDDQDIHVKGLRHFETERGYWLVINASQLKVQPPPCDTSLMFDKHQLTF 719
Query: 627 NVTKWSES-MPCFLNREIISLLSTLGVKDE-VFEAMQQQQLILLGKMLI---NREAALDV 681
+V+ +S+ P LN + + +L G E + + ++ + L+ AA
Sbjct: 720 DVSSYSQPPQPVHLNTQFLMVLQDRGTNKEYILSLIPKEADKFYSEFLLVQNGDSAACRA 779
Query: 682 LQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIG 741
+ NG D+ + + + + P+ L+M L + ++P +
Sbjct: 780 WVRQNGGDASSQIPALNESTFPPSRTVQLNMFLDAG--------------FLPSNLAFVR 825
Query: 742 -CFDETGILNYGQVFVRVTMTREELESKDQSFFHRVD---DKTSIVKG-KVLVTKNPCLH 796
F E + ++ Q + + + K Q D D T+ + G VLV + P
Sbjct: 826 RLFKENFLGDFVQKLEALKIKIPKSTYKAQIHLDLGDSWEDGTTDLDGIDVLVARAPAHL 885
Query: 797 PGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI 853
P D++ AV+ L + + IFP KGE P + SGGD DGD ++ WD +++
Sbjct: 886 PSDIQKCRAVFHPAL--RYLKNVAIFPTKGEVPLASLLSGGDYDGDEVWVCWDQEIV 940
>gi|239612171|gb|EEQ89158.1| RNA-directed RNA polymerase [Ajellomyces dermatitidis ER-3]
Length = 1382
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 105/437 (24%), Positives = 177/437 (40%), Gaps = 76/437 (17%)
Query: 555 DGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSFR------ 608
D +DG +S S ++A GL P+ FQ R G KGV VDR+ R
Sbjct: 688 DPPPPVMNDGCALMSRSLGMEIACTLGLETVPAIFQGRISGAKGVWMVDRDDSRFRVGDR 747
Query: 609 --KLSLRRSMLK------FESR-----NRMLNVTKWSESM-PCFLNREIISLLSTLGVKD 654
L + S LK +++R V +WS + P LN +++++L G+++
Sbjct: 748 RFGLQITESQLKIHPAPPYDTRPVDDTQLAFEVVQWSRPLSPAALNLQLLNILQHGGIRN 807
Query: 655 EVFEAMQQQQL------ILLGKMLINREAALDVLQKLNGVDSKNI--------------- 693
+ +++ +Q++ L + N A LQK+ + ++
Sbjct: 808 DHIKSLIKQEMSSFYDDFLETLRVPNGVACRSWLQKMKRITDESYKRQTKRTSNYFPPQY 867
Query: 694 ---LVKMLLQGYEPNVEPYLSMM---LLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETG 747
V +L G+ P PYL+ + LL + N L +LK R V + D G
Sbjct: 868 AEQAVLLLDAGFLPLKLPYLTELFKRLLHDYLNNLKNLKVR----VSQSTFAYCIADPFG 923
Query: 748 ILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVY 807
+L +V + + E + H +D +L+ + P D++ +VY
Sbjct: 924 VLKPDEVHLGFSSAWEHGSVGTE--LHGID---------ILLARLPAHLSTDIQKRRSVY 972
Query: 808 EMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWD--------NDLIPCETEP 859
+ L + + D I+FP G+ P + SGGD DGD ++ WD N +T P
Sbjct: 973 KNAL--RHFKDVIVFPTTGDTPLASLLSGGDYDGDQCWVCWDPIIVREFKNTEFDPKTVP 1030
Query: 860 PMDYTGRR---SRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKC 916
+ G R +RI ++ T + + F + + LG + H + SS
Sbjct: 1031 SEESLGLRDHSTRISEYVSTEKFLANAFKFNLKSSKLGPCTVEHETFCYHQ-NNINSSLG 1089
Query: 917 LHLATLHSMAVDFAKTG 933
+ LA L S VD K+G
Sbjct: 1090 VKLAWLLSYLVDSRKSG 1106
>gi|242048810|ref|XP_002462151.1| hypothetical protein SORBIDRAFT_02g020720 [Sorghum bicolor]
gi|241925528|gb|EER98672.1| hypothetical protein SORBIDRAFT_02g020720 [Sorghum bicolor]
Length = 84
Score = 67.0 bits (162), Expect = 6e-08, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 49/93 (52%), Gaps = 20/93 (21%)
Query: 938 MPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEA----- 992
M L L+P+EFPDFME+ ++P Y+S VL KLYRA A+W E+ EA
Sbjct: 1 MSLTLRPQEFPDFMEQWERPMYVSNSVLDKLYRA-----------ALWHEENTEALLPVP 49
Query: 993 ----SYDHDLEVDGFEAFLGVAESHKEMYEEEM 1021
YD D+EV GF+ L AE Y E +
Sbjct: 50 PPSSMYDPDVEVAGFDKHLDTAEKQYRAYAERL 82
>gi|147767777|emb|CAN71520.1| hypothetical protein VITISV_042316 [Vitis vinifera]
Length = 1202
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 136/585 (23%), Positives = 229/585 (39%), Gaps = 152/585 (25%)
Query: 579 KCGLSHT---PSAFQIRY----GGYKGVIAVDRN-SFRKLSLRRSMLKFESRNRM----- 625
+C +HT P Q R KG + ++R R + +R SM+K E+ ++
Sbjct: 714 RCLETHTWEPPLLIQCRLFNNGCAVKGTLLLNRKLPPRTIQIRPSMIKVETDPKLSDTQT 773
Query: 626 -----LNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALD 680
+N T ++ +L++ +I+LLS GV +E F + LL L + +
Sbjct: 774 VNSVEINGTS-NQPRRSYLSKYLIALLSYGGVPNEYF-------MNLLKDALEDAPSVQS 825
Query: 681 VLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRL-- 738
+ + + +D +I+ +M+L G P EP+L +++LS + + R + G+L
Sbjct: 826 ISLRFDEMDD-SIVTRMILSGI-PIDEPFL--------QHRLSFMVNEERKGLRVGKLPV 875
Query: 739 -----LIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNP 793
L+G D TG L +V + + + V+G+VLV K+P
Sbjct: 876 NDCFYLMGTADPTGKLKSDEVCIILDHGQ--------------------VQGRVLVYKHP 915
Query: 794 CLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI 853
LH GD+ VL A Y LEE + +K H +
Sbjct: 916 GLHFGDIHVLNATYVEALEEASEP----WMRKXSTRH----------------------V 949
Query: 854 PCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVD--YMINDTLGAISTAHLVHADR----- 906
P ++ P D++ D E+ + F+ + + +G + LV DR
Sbjct: 950 P--SKRPTDFSP--------DELEHELFQLFLTTRFQTSSAIGMAADNWLVFMDRLLTLR 999
Query: 907 ----DPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISF 962
D + K L L ++ A+D K+G + LK ++FP FM RE Y S
Sbjct: 1000 DDCSDEKECLKRKMLELTDIYYDALDAPKSGMKVNVSKELKAEKFPHFMGRESS--YHST 1057
Query: 963 GVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMN 1022
+LG++Y A + S ++ +A +A L + + Y EM
Sbjct: 1058 SILGQIYDA-------VESFQPENQSTKDAVP---------QACLRSWKDRYDQYRSEMA 1101
Query: 1023 ALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSCK 1082
A + +G T+DE + L YG A E+ S K
Sbjct: 1102 AALQ-HGGETKDEYAAEVINKYKQIL------YG----------------AAEFEESPRK 1138
Query: 1083 ENEHPQLASAWYHVTYSPSYCKERMALLSFPW-IVGDILLNIKSV 1126
+ A A YHVTY + R++ +FPW + G L + +V
Sbjct: 1139 LEDIFDEALAIYHVTYEFAINGARVSYCNFPWRVAGRALCKLYTV 1183
>gi|384493387|gb|EIE83878.1| hypothetical protein RO3G_08583 [Rhizopus delemar RA 99-880]
Length = 1222
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 74/304 (24%), Positives = 134/304 (44%), Gaps = 52/304 (17%)
Query: 377 SHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKL 436
S R++ ++ + Y+ + +I P++ SN + + F + F+ +T
Sbjct: 309 SRNRMVRYSAIVYYKTINHKPRISLRPPKIAASNRLFRKFGQ--DRFLEIT--------- 357
Query: 437 PANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFA 496
+NA S S+ R + Y + L ++Q + + FL +++ ++ FA
Sbjct: 358 TSNACSPSMIR------HFKDFYMKPLLLMQ-------RVFRFLF-----IKDATLVFFA 399
Query: 497 SN----DEVSAEDVRGWMGCF--NKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDV 550
+ + +S + V W N ++SK +RM +SSS T+ +E I DV
Sbjct: 400 TEGIDLEPISIQQVIDWHLPITENWGMTMSKYVSRMSLGYSSSIPTIQFEPDQIEYIDDV 459
Query: 551 -EVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAV----DRN 605
T+ G+ C +DG G IS + +++ P A Q R GG KG+ + D N
Sbjct: 460 YSKTAKGSAACMTDGCGIISCAAMKEIMGCQTTDELPCAVQGRIGGAKGIWIISPDLDFN 519
Query: 606 SFRKLSLRRSMLKFES----RNRMLNVTKWSESM--------PCFLNREIISLLSTLGVK 653
S + + +R+S KF++ N L+ ++ + P FLN + I +L+ GV
Sbjct: 520 SGKYIKIRKSQNKFKTGLPQSNLRLDPHHYTFDLVKNSICVYPSFLNTQFIQVLAAGGVP 579
Query: 654 DEVF 657
EVF
Sbjct: 580 TEVF 583
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 104/234 (44%), Gaps = 43/234 (18%)
Query: 722 LSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTS 781
+ + ++ ++ V + + D TG L +VF++++ +VD++T
Sbjct: 725 MKSVNTKYKVEVAQSCTVTCIPDPTGTLEPDEVFLQLST-------------RKVDERTG 771
Query: 782 I----VKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGG 837
+ + G V+VT+NPC DV+ ++AV L + Y D IIF KG+ ++ GG
Sbjct: 772 VCAGLITGDVIVTRNPCGLKSDVQKVKAVDCPAL--RMYTDLIIFSVKGDTSLASKLGGG 829
Query: 838 DLDGDIFFISWDNDLI-PCETEPPM------------DYTGRRSRIMDHDVTLEEIHKFF 884
D DGD+ + WD ++ P + P + D T ++ H T + + F
Sbjct: 830 DYDGDLIYCCWDQRIVEPFKPSPVVKELKQVYQAFEQDKTTVGQQVSSHTNTEKALQMSF 889
Query: 885 VDYMIND-TLGAISTAHLVHADR----DPDKARSSKCLHLATLHSMAVDFAKTG 933
+ I D TLG V A+R DP+ + +LA + + VD K G
Sbjct: 890 ISAQIPDGTLGLYENWRTVLAERTSLDDPNVS------YLAQMCARLVDAPKQG 937
>gi|317151716|ref|XP_001824860.2| RNA-directed RNA polymerase [Aspergillus oryzae RIB40]
Length = 1291
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 101/455 (22%), Positives = 178/455 (39%), Gaps = 77/455 (16%)
Query: 534 KQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLS-HTPSAFQIR 592
K + ++P+++ E P +DG +S A ++ G++ TPSAFQ R
Sbjct: 600 KPSQILPLEEPEGTP-----------VMNDGCALMSRGLASRICDSLGITGATPSAFQGR 648
Query: 593 YGGYKGVIAVDRN-------SFRKLSLRRSMLKF-----------ESRNRMLNVTKWSES 634
G KG+ VD++ S + + S LK + V KWS+
Sbjct: 649 IAGAKGLWMVDKHNSTISTESDVWIQISDSQLKIKPHPAGWQEPVDEEKLTFEVVKWSKP 708
Query: 635 MPCF-LNREIISLLSTLG-VKD--------------EVFEAMQQQQLILLGKMLINR--- 675
+ LN +++++L G +K+ E F + Q +L + LI +
Sbjct: 709 LHTVDLNTQLLAILEHGGQIKEYVAGLTRAGIRAVCEDFATVVQSDSPVLCRSLIQKMKP 768
Query: 676 ---EAALDVLQKLNGV-----DSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKS 727
++ +L K+ + D +V++ G+ P L L L
Sbjct: 769 SAESSSAAMLHKVRRMEEWMADDAEAVVRLTEAGFAPRTFRPLRKRLRKCLIGLLDQYVE 828
Query: 728 RCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESK-DQSFFHRVDDKTSIVKGK 786
+ I VP D +L +V + + E + + + +D
Sbjct: 829 QLHIEVPLSTYAFCIADPYRVLKEDEVHFGFSSNWRDPEGQFEDNLLDGMD--------- 879
Query: 787 VLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFI 846
VLV + P P D++ AV+ K E + + D I+FP G P + SGGD DGD ++
Sbjct: 880 VLVARLPAHVPSDIQRRRAVW--KPELRHFKDVIVFPTVGTTPLAHMLSGGDYDGDTTWV 937
Query: 847 SWDNDLIP---CETEPPMDYTGRRSRIMDHDVTLEEIHKF--FVD--YMINDTLGAISTA 899
WD +++ M+Y + +H+V +++I + F+ + N T+ +
Sbjct: 938 CWDQNIVQKFRNSDLSTMEYPAEHFGLEEHNVPMKDIDSWDEFLQSTFTFNLTMSNLGRC 997
Query: 900 HLVHADRDPDKA-RSSKCLHLATLHSMAVDFAKTG 933
+ H D++ S LA L S VD K G
Sbjct: 998 TVEHEKISYDESIDSPNAKELACLLSHLVDGRKGG 1032
>gi|403411358|emb|CCL98058.1| predicted protein [Fibroporia radiculosa]
Length = 1270
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 78/174 (44%), Gaps = 19/174 (10%)
Query: 694 LVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQ 753
++++L G+ P P L L E ++ + RI + D G+L GQ
Sbjct: 780 VLELLQAGFHPLELPILYEKLRQIVEKRIEEFIKEYRIVLENSAEAFIMPDPYGVLEEGQ 839
Query: 754 V-FVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLE 812
+ F+ ++ LE D + G+VL+ +NP P DVR + AV KL
Sbjct: 840 IQFIATQNLKDPLE----------DPMPMAITGEVLLYRNPARVPSDVRKVIAVVHPKLV 889
Query: 813 EKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI------PCETEPP 860
E YV+ I+ P KG+R N +GGD+DGD+ ++ L+ P PP
Sbjct: 890 E--YVNVIVLPTKGKRSLANILAGGDVDGDVAVCIYEPSLVKPFRNGPINDPPP 941
>gi|171685170|ref|XP_001907526.1| hypothetical protein [Podospora anserina S mat+]
gi|170942546|emb|CAP68197.1| unnamed protein product [Podospora anserina S mat+]
Length = 1478
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 74/326 (22%), Positives = 138/326 (42%), Gaps = 46/326 (14%)
Query: 560 CFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVI---AVDRNSFRKLSLRRSM 616
+DG+G++S + AR++ GL+ PSA Q R G KG+ +D + S
Sbjct: 793 VMNDGVGRMSRTVARKIRDIMGLTEIPSAVQGRIGSAKGMWIMDVLDTGDEEWIETWLSQ 852
Query: 617 LKFES-------RNRMLNVTKW-SESMPCFLNREIISLLS-----------TLGVK--DE 655
K+E R L + + +E LN + + +L +G + ++
Sbjct: 853 RKWECDPQTVDIHQRTLEIRAYATELKSAGLNLQFLPVLEDRAKDKAQMKRAIGARLTND 912
Query: 656 VFEAMQQQQLILLGKMLI------NREAALDVLQK----LNGVDSKN--ILVKMLLQGYE 703
+ + Q+ +L+ N D ++ L G+ K +L +L G++
Sbjct: 913 LKKEFDDQKAAFKHPLLLRQWLHENWSGRADRVKNEVAFLGGLPEKKEEVLNLLLHSGFD 972
Query: 704 PNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTRE 763
P + Y+ + + + L ++ I V + + D +L G+V V + ++
Sbjct: 973 PKHQKYIQDIAWELQKQKCDILSTKLNIKVGRSAYIYMVVDFWEVLEEGEVHVGFS-SKF 1031
Query: 764 ELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFP 823
++ D S+ T + VLV ++P DV+ + AV++ +L D I+F
Sbjct: 1032 RGDADDTSY-------TLLSDCDVLVARSPAHFASDVQRVRAVFKPQLHA--LKDVIVFS 1082
Query: 824 QKGERPHPNECSGGDLDGDIFFISWD 849
KG P + SGGD DGD+ ++ WD
Sbjct: 1083 SKGNVPLAEKLSGGDYDGDMAWVCWD 1108
>gi|83773600|dbj|BAE63727.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 1260
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 101/455 (22%), Positives = 178/455 (39%), Gaps = 77/455 (16%)
Query: 534 KQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLS-HTPSAFQIR 592
K + ++P+++ E P +DG +S A ++ G++ TPSAFQ R
Sbjct: 569 KPSQILPLEEPEGTP-----------VMNDGCALMSRGLASRICDSLGITGATPSAFQGR 617
Query: 593 YGGYKGVIAVDRN-------SFRKLSLRRSMLKF-----------ESRNRMLNVTKWSES 634
G KG+ VD++ S + + S LK + V KWS+
Sbjct: 618 IAGAKGLWMVDKHNSTISTESDVWIQISDSQLKIKPHPAGWQEPVDEEKLTFEVVKWSKP 677
Query: 635 MPCF-LNREIISLLSTLG-VKD--------------EVFEAMQQQQLILLGKMLINR--- 675
+ LN +++++L G +K+ E F + Q +L + LI +
Sbjct: 678 LHTVDLNTQLLAILEHGGQIKEYVAGLTRAGIRAVCEDFATVVQSDSPVLCRSLIQKMKP 737
Query: 676 ---EAALDVLQKLNGV-----DSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKS 727
++ +L K+ + D +V++ G+ P L L L
Sbjct: 738 SAESSSAAMLHKVRRMEEWMADDAEAVVRLTEAGFAPRTFRPLRKRLRKCLIGLLDQYVE 797
Query: 728 RCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESK-DQSFFHRVDDKTSIVKGK 786
+ I VP D +L +V + + E + + + +D
Sbjct: 798 QLHIEVPLSTYAFCIADPYRVLKEDEVHFGFSSNWRDPEGQFEDNLLDGMD--------- 848
Query: 787 VLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFI 846
VLV + P P D++ AV+ K E + + D I+FP G P + SGGD DGD ++
Sbjct: 849 VLVARLPAHVPSDIQRRRAVW--KPELRHFKDVIVFPTVGTTPLAHMLSGGDYDGDTTWV 906
Query: 847 SWDNDLIP---CETEPPMDYTGRRSRIMDHDVTLEEIHKF--FVD--YMINDTLGAISTA 899
WD +++ M+Y + +H+V +++I + F+ + N T+ +
Sbjct: 907 CWDQNIVQKFRNSDLSTMEYPAEHFGLEEHNVPMKDIDSWDEFLQSTFTFNLTMSNLGRC 966
Query: 900 HLVHADRDPDKA-RSSKCLHLATLHSMAVDFAKTG 933
+ H D++ S LA L S VD K G
Sbjct: 967 TVEHEKISYDESIDSPNAKELACLLSHLVDGRKGG 1001
>gi|389742384|gb|EIM83571.1| hypothetical protein STEHIDRAFT_101865 [Stereum hirsutum FP-91666
SS1]
Length = 987
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 99/472 (20%), Positives = 176/472 (37%), Gaps = 107/472 (22%)
Query: 479 FLAFSASQLRNNSVWMFASN-------DEVSAEDVRGWMGCF---------NKIRSVSKC 522
FL F++ +++ V++ +N D +D R +G F N ++VSK
Sbjct: 187 FLVFAS---KDSKVFLMETNENYERVADPRQGDDRRLSLGQFLSWHNSFSRNSKQAVSKW 243
Query: 523 AARMGQLFSSSKQTLVVPVQDVEMIPD-----VEVTSDGNTYCFSDGIGKISLSFARQVA 577
R S+S L D+E+IPD ++ ++ +DG G ++++ VA
Sbjct: 244 VTRFDLGLSTSVPVLQFAPDDIEVIPDKYPKDIDQSNASTEQTLTDGCGFMNMAALVAVA 303
Query: 578 QKCGLSHTPSAFQIRYGGYKGV-----IAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWS 632
+ G +A Q R G KGV + D +S ++ +R S +K + ++ L W
Sbjct: 304 RSMGFLSPHTAVQGRIAGSKGVWMLHPVDRDPHSPPRIWIRDSQVKIKLGDQRL----WK 359
Query: 633 E-------------SMPCFLNREIISLLSTLGVKDEVFEAMQQ----------------- 662
+ P L+ + I + GV +E F +
Sbjct: 360 REHLIFDFLGPSRVTYPGRLSMQFIINMEHNGVPNEAFALLMDDGLREHIDPLMKWDGPE 419
Query: 663 --------------------QQLILLGK--MLINREAALDVLQKLNGVDSKN-------- 692
QQL + + + ++ D Q L GV+
Sbjct: 420 APHLLRDALDKMGNVSGSKVQQLAGSSRRALGLGQKFGRDNEQPLAGVEDGGDPAAEEAE 479
Query: 693 -----ILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETG 747
++ ML G+ P YL L ++ I +P D G
Sbjct: 480 IFCHERVMMMLAAGFTPKNAIYLRTELRELISREIEKWVKNYHIVIPHSAEAFIVPDPYG 539
Query: 748 ILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVY 807
IL Q+F + ++ + + ++ SI++G L+ +NP P D++ + AVY
Sbjct: 540 ILEPDQIFFQSSVPLNDPATG-------MNMNISILEGPCLIGRNPARLPSDIQKVTAVY 592
Query: 808 EMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEP 859
+ + K+Y D II KG+ +GGD DGD + W ++ + P
Sbjct: 593 --RPQYKEYKDVIICSIKGKVSAAFPLAGGDYDGDRALLQWSPTVVEPFSRP 642
>gi|320170627|gb|EFW47526.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 1247
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 75/312 (24%), Positives = 128/312 (41%), Gaps = 75/312 (24%)
Query: 583 SHTPSAFQIRYGGYKGVIAVDRNSFRK--------------LSLRRSMLKFES----RNR 624
S PSA+QIR+GG+KG++ V + ++ + L RSMLKF++ +R
Sbjct: 417 SFVPSAYQIRFGGFKGMLVVVTETVQEQLCKGISAAAPMPSMLLPRSMLKFQTPDFPEHR 476
Query: 625 MLNVTKWS-ESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILL----GKMLINREAAL 679
L V + S P LN EI+ +L + V ++ + +L +++ AL
Sbjct: 477 RLEVLGCAFPSSPVTLNNEIVDMLIGVATDSLVMRGFLKRLVTTFLDDCNFLLADQQKAL 536
Query: 680 DVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLL 739
+ + +I V+ML G+ L S ++L L I +P L
Sbjct: 537 AYYLQ----EKDDIGVRMLAAGHSLKF-----TYLTSFFRSKLIPL----HIPLPSTARL 583
Query: 740 IGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGD 799
G D + +L G V+V +T +V G V++ K PC D
Sbjct: 584 YGVADWSSLLPPGHVYVN-------------------SGETGLVSGDVVMLKEPCFLRTD 624
Query: 800 VRVLEAVYEMKLEEKDYV---------DCIIFPQKGE--RPHPNECSGGDLDGDIFFISW 848
++ +A+ ++D+V + ++F + +G DLDGD F + W
Sbjct: 625 IQRFKAI------DRDHVAFKQLCHLRNVVVFSTASSCTSSDASAMAGSDLDGDKFIVCW 678
Query: 849 DN---DLIPCET 857
D D + C+T
Sbjct: 679 DQTILDNVDCQT 690
>gi|393232270|gb|EJD39854.1| hypothetical protein AURDEDRAFT_171128 [Auricularia delicata
TFB-10046 SS5]
Length = 1291
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 85/165 (51%), Gaps = 20/165 (12%)
Query: 693 ILVKMLLQGYEPNVEP----YLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGI 748
+ ++ML G++P P ++ +L + E L K R I + ++I D + +
Sbjct: 801 MALRMLFSGFDPVTCPILRSHIRTVLRTSTEQYLK--KFRVEITMSAEAMIIS--DTSLV 856
Query: 749 LNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYE 808
L ++F+ + ++ L++ ++ H + G VLV +NP P D++ ++AVY+
Sbjct: 857 LGENEIFL--SSSKVLLDNSGRTMNH--------LSGDVLVYRNPVRLPCDIQKVKAVYK 906
Query: 809 MKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI 853
+L+ Y D I+F KG R ++ +GGD DGD + WD D++
Sbjct: 907 PELDH--YRDVIVFSAKGTRSLASKLAGGDYDGDTAVVIWDQDIV 949
>gi|449541618|gb|EMD32601.1| hypothetical protein CERSUDRAFT_126709 [Ceriporiopsis subvermispora
B]
Length = 1473
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 57/117 (48%), Gaps = 11/117 (9%)
Query: 744 DETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVL 803
D G+L GQ+ R T ++ D + + G VLV +NPC DV+ +
Sbjct: 1032 DPYGVLEPGQIHFRATQLLKD---------SITDPEPDTLLGDVLVYRNPCRVASDVQKV 1082
Query: 804 EAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPP 860
AV KL E Y D I+ P KG+R + +GGD+DGD+ WD +++ PP
Sbjct: 1083 TAVSHPKLTE--YTDVIVLPTKGDRSLASLLAGGDVDGDVCVCIWDPEIVSQFQLPP 1137
>gi|170091852|ref|XP_001877148.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164648641|gb|EDR12884.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 1193
Score = 64.3 bits (155), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 111/528 (21%), Positives = 193/528 (36%), Gaps = 145/528 (27%)
Query: 561 FSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSFRKLS--LRRSMLK 618
+DG G I+ R++ + P+A Q+R G KG++ + ++ S L S +K
Sbjct: 466 MTDGAGSINRYCLRELRHRYDWEEKPTAIQVRLFGAKGLLVENTDTTESPSVILTPSQMK 525
Query: 619 FESRNRM--------LNVTKWSES-MPCFLNREIISLLSTLGVKDEVFEAMQQQQLI--- 666
+ + +++ + S S PC L+ E I L+ GV F + +Q LI
Sbjct: 526 IQYPTHLDPDPAHLIIDLLRSSHSKAPCRLSVETIINLAENGVPKSAFLELLRQGLIELV 585
Query: 667 --------------------LLGKMLINREAALDV-LQKLNG------------------ 687
LG ++ R A D L ++ G
Sbjct: 586 EPLLDWESPMAMRKLWCNVRKLGGIMAARRAREDAGLARVKGYSEWEAEEVEADDEDGFK 645
Query: 688 -VDS--------------------KNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLK 726
+DS + ++ ++ G+ P P L L ++ + +
Sbjct: 646 QLDSVKQGSSAWWNDEISGCPSSLEETVMYLIDAGFTPQTCPVLRSKLEKIVKSSVKNYI 705
Query: 727 SRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGK 786
RI VP D G+L G++F + + R L D + +T I+ G
Sbjct: 706 KAYRIDVPMSASAFLVPDILGVLKPGEIFYKSS--RRNLRQTDGT-------ETDIMLGD 756
Query: 787 VLVTKNPCLHPGDVRVLEAVYEMKLEEKDY---------------VDCIIFPQKGERPHP 831
VL+T++PC P D++ + A + + Y D I+ P G+R
Sbjct: 757 VLITRHPCKLPTDIQKVRASSQFMFVKHLYSPQWKAVDRPELHHLTDVIVLPTTGDRRAA 816
Query: 832 NECSGGDLDGDIFFISWDNDLI------PCE-TEPPMDYTG-------------RRSRIM 871
+ SGGD DGD I+ +L+ P +EPP + R+ ++
Sbjct: 817 DLLSGGDYDGDKGLITNQPELVIPFINAPLHFSEPPSNMQKYFVRENEAVPAFLERTSVL 876
Query: 872 DHDVTLEEIHKFFVDYMINDTL---------GAISTAHLVHADRDPDKARSSKCLHLATL 922
D + E ++ + + + ++ AI T H + + LA +
Sbjct: 877 SDDAKIHERQQYLLGAIRDTSVVGKYSNFHEAAIYTLGYTHPE----------TIRLAYM 926
Query: 923 HSMAVDFAKTGAPAEMPLALK------PKEFPDFME-REDKPRYISFG 963
M +D AKTG +P LK K P + E ED+ R++ G
Sbjct: 927 FCMTLDGAKTGMTV-LPQVLKDDTRKYQKRPPTWKETEEDRERHVMHG 973
>gi|219117572|ref|XP_002179579.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408632|gb|EEC48565.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|225382106|gb|ACN89265.1| putative RNA-dependent RNA polymerase [Phaeodactylum tricornutum]
Length = 976
Score = 63.9 bits (154), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 106/267 (39%), Gaps = 69/267 (25%)
Query: 726 KSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKG 785
++RCRI+ + G D TG + +G VFV + +E
Sbjct: 739 QTRCRIH---HTFMPGYADPTGAIPHGHVFVTGSKPFQE--------------------N 775
Query: 786 KVLVTKNPCLHPGDVRVLEAVY----EMKLEEKDYVDCIIF-------PQKGERPHPNEC 834
+ VT++PC+ P D R+L + M +++ ++++ + F G +P P
Sbjct: 776 LLFVTRSPCIFPSDGRLLPNLVTKPNAMVIDDWNWLNSLPFGALIFADATPGMKPLPAHI 835
Query: 835 SGGDLDGDIFFISWDNDLI------PCETEPPMDYTGRRS-------------------R 869
+ GDLDGD++F+ WD++++ P EP G +
Sbjct: 836 ANGDLDGDLYFVCWDSEILRNVRADPIVEEPLTLTDGEVASTPQAKMPPENPNWFEEALE 895
Query: 870 IMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDF 929
IM L EI F+ + N L A RDPD + AT ++ A+D+
Sbjct: 896 IMCDPAELAEISAFY-GKLFNLALKAALNNPNNLLLRDPD------AMDYATAYNQALDY 948
Query: 930 AKTGAPAEMPLALK---PKEFPDFMER 953
K G ++P L P F ++ +
Sbjct: 949 HKHGRLVQLPRRLHSSIPTRFHQYLAK 975
>gi|255956165|ref|XP_002568835.1| Pc21g18410 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211590546|emb|CAP96738.1| Pc21g18410 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1430
Score = 63.9 bits (154), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 102/427 (23%), Positives = 169/427 (39%), Gaps = 71/427 (16%)
Query: 555 DGNTYCFSDGIGKISLSFARQVAQKCGLS-HTPSAFQIRYGGYKGVIAVDRNSFRKLSLR 613
D +DG +S + A Q+ + G++ TPS FQ R G KG+ + + S +L +
Sbjct: 782 DPTRPVMNDGCALMSRTLANQICDQLGITTATPSCFQGRIAGAKGLWMI-QISDSQLKIH 840
Query: 614 RSMLKF----ESRNRMLNVTKWSESM-PCFLN-------------REIISLLSTLGVK-- 653
++ + V W++ + P LN +E I+ L+ GV+
Sbjct: 841 PHPQEWVGPVDEEKLTFEVVNWAKQLHPVDLNIQLLAILEYGGNVKEYIAKLTRDGVQSL 900
Query: 654 -DEVFEAMQQQQLI----LLGKMLINREAALDVLQKLNG--VDSKNILVKMLLQGYEP-- 704
D+ E ++ + LL K+ + E ++L + ++ G+ P
Sbjct: 901 YDDFLEVLRSNSPVVCRALLQKLRPSGEDGTGKARRLEQWVTNDAESIIHFSEAGFAPRD 960
Query: 705 ------NVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRV 758
+ YL+ +L E + +LK I VP D G+L +V
Sbjct: 961 FFPLRMKIRQYLTWLL----ERNVEELK----IQVPLSTYAYCIADPYGVLGPDEVHFGF 1012
Query: 759 TMTREELESK-DQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYV 817
+ + + + + + VD VLV + P P D++ AV++ +L + +
Sbjct: 1013 SNNWRDPQGQFEDNLLDGVD---------VLVGRLPAHLPSDIQRRRAVWKSEL--RHFK 1061
Query: 818 DCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPM---DYTGRRSRIMDHD 874
+ I+FP GE P SGGD DGD +I WD ++ PM +Y+ + H
Sbjct: 1062 NVIVFPTTGEFPLAGMLSGGDYDGDTPWICWDPMIVERFQNSPMPTDEYSAEHYGLTKHS 1121
Query: 875 V---TLEEIHKFF---VDYMIN-DTLGAISTAHLVHA-DRDPDKARSSKCLHLATLHSMA 926
V +LE F D+ +N LG + H A D D S K LA L
Sbjct: 1122 VPMASLESTEDFLESVFDFNLNVSNLGRCTVEHEKLAYDESVD---SPKAKELACLLGHL 1178
Query: 927 VDFAKTG 933
VD K G
Sbjct: 1179 VDGRKGG 1185
>gi|403414080|emb|CCM00780.1| predicted protein [Fibroporia radiculosa]
Length = 1620
Score = 63.9 bits (154), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 78/165 (47%), Gaps = 19/165 (11%)
Query: 697 MLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFV 756
+L G+ P P L+ L + ++ + + +I V + + D +L G++ V
Sbjct: 1110 LLDAGFNPKTCPVLAAKLKEVVKRVITTMVRKYQIEVSQSLSAVIVPDPCNVLRPGEIHV 1169
Query: 757 RVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDY 816
+ S ++ + +T I+ G VLVT++PC P DV+ ++AVY KL ++Y
Sbjct: 1170 K---------SSQRNLVDQDGKRTDIILGDVLVTRHPCKVPTDVQKVQAVYHEKL--RNY 1218
Query: 817 VDCIIFPQKGE-------RPHPNECS-GGDLDGDIFFISWDNDLI 853
VD I+ K H C+ GGD DGD+ + W +L+
Sbjct: 1219 VDVIVVSTKDHIYGNKLLNRHLASCTGGGDYDGDMMEVFWKRELV 1263
Score = 43.9 bits (102), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 87/197 (44%), Gaps = 26/197 (13%)
Query: 513 FNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTS-DGNTYC-----FSDGIG 566
N+ +++ K AAR S+S V ++ D+ + DGN +DG G
Sbjct: 836 LNRHQTMVKWAARFALGLSNSVPGARVRPSEIAFEDDIICAAWDGNGKAPNEQIMTDGCG 895
Query: 567 KISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSFR-------KLSLRRSMLKF 619
IS + +A + GLS P+A Q+R G KG++ + R ++ LR S +K
Sbjct: 896 LISTDILQLIADRLGLSSVPTAIQMRVCGSKGILLAHPHPQRPSLASSPRVWLRPSQVKI 955
Query: 620 E--SRNRM----------LNVTKWSE-SMPCFLNREIISLLSTLGVKDEVFEAMQQQQLI 666
+ + N++ ++V + S + P L+ E I L+ GV +VF + + L
Sbjct: 956 KHSTTNQLPANLDPALCTIDVLRPSRLTSPVRLSTETIINLAENGVPTDVFINLMKATLK 1015
Query: 667 LLGKMLINREAALDVLQ 683
L N E +L + +
Sbjct: 1016 AKVHSLTNWEGSLGLFK 1032
>gi|302653254|ref|XP_003018456.1| RNA-directed RNA polymerase, putative [Trichophyton verrucosum HKI
0517]
gi|291182103|gb|EFE37811.1| RNA-directed RNA polymerase, putative [Trichophyton verrucosum HKI
0517]
Length = 1082
Score = 63.9 bits (154), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 79/371 (21%), Positives = 140/371 (37%), Gaps = 73/371 (19%)
Query: 533 SKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIR 592
S+ T + ++ E I D D SDG +S S + +A LS P+ FQ R
Sbjct: 389 SRTTATITLRPEEFIYD----DDPRQEKMSDGFAMMSRSLGKAIADSLCLSKVPTIFQGR 444
Query: 593 YGGYKGV--IAVDRNSFRKLSLRR------------------------SMLKFESRNRML 626
G KG+ +A D + LR + L F+
Sbjct: 445 IAGAKGIWLVAKDDHDIHVKGLRHFETERGYWLVINASQLKVQPPPCDTSLTFDEHQLTF 504
Query: 627 NVTKWSES-MPCFLNREIISLLSTLGV-KDEVFEAMQQQQLILLGKMLINREA---ALDV 681
+V+ +S+ P LN + + +L GV K+ + + + + L+ + A
Sbjct: 505 DVSSYSQPPQPVHLNIQFLMVLQDRGVNKEYILSLIPDEADKFYSEFLLVQNGDSVACRA 564
Query: 682 LQKLNGVDSKNILVKM----------------LLQGYEPNVEPYLSMMLLSHHENQLSDL 725
+ NG D+ + ++ + L G+ P+ ++ + EN L
Sbjct: 565 WVRKNGGDASSQILALNESTFPTNHTAQLNGLLDAGFSPSNLAFVRRLF---KENSLGGF 621
Query: 726 KSRC---RIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSI 782
+ +I +P + D G+L GQ+ + + + E D T +
Sbjct: 622 VQKLEALKIKIPHSTYVYCIPDPYGVLEEGQIHLDLGDSWE-------------DGTTDL 668
Query: 783 VKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGD 842
VLV + P P D++ AV+ L Y+ + KG+ P + SGGD DGD
Sbjct: 669 DGIDVLVARAPAHLPSDIQKCRAVFHPALR---YLKHVAIFTKGDVPLASLLSGGDYDGD 725
Query: 843 IFFISWDNDLI 853
++ WD +++
Sbjct: 726 EVWVCWDQEIV 736
>gi|406863804|gb|EKD16851.1| hypothetical protein MBM_05320 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 1323
Score = 63.5 bits (153), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 87/376 (23%), Positives = 153/376 (40%), Gaps = 65/376 (17%)
Query: 528 QLFSSSKQTLVVPVQDVEMIPD-VEVTSDGNTY-----CFSDGIGKISLSFARQVAQKCG 581
+LF+ + L V ++PD +++ + T+ +DG G++S S A ++ Q G
Sbjct: 587 KLFNRTTLALSRTESTVVLMPDQIKIMAQNITFGDPKNVMNDGAGRMSPSLALKITQTLG 646
Query: 582 LSHTPSAFQIRYGGYKGVIAVDRN------------SFRKLSLRRSMLKFESRN---RML 626
LS+ P+AFQ R G KG+ D + S RK +R+ ES + R
Sbjct: 647 LSYLPAAFQGRIGEAKGLWITDLHYTGQDDWIETYPSQRKW-VRKKTGDQESDDESHRTF 705
Query: 627 NVTKWS----------ESMPCFLNREIISLLSTLGVKD-----------EVFEAMQQQQL 665
V+K S + +P ++R LL + D E+ EA QL
Sbjct: 706 EVSKCSGPLKSADLNLQFLPILMDRAKDKLLMKRVLSDILKHGLQLRVQEIQEARDHPQL 765
Query: 666 ILL------GKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHE 719
M ++ L V + + + +L G+ P ++ +
Sbjct: 766 FRQWVRDSNPNMKERERGSIGYKAGLPNVLEERLNI-LLDAGFHPKGIRFMEDLAKKVFT 824
Query: 720 NQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVD-- 777
++ +LK R I V + D G+L G+V++ + SF V
Sbjct: 825 KRIDELKKRLNITVGRSTYAYMVPDFWGVLEEGEVYIDFS-----------SFVDNVSGL 873
Query: 778 DKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGG 837
S ++LV ++P D++ ++AV ++ E D IIF KG ++ SGG
Sbjct: 874 SGASPSGSQILVARSPAHFVSDIQKVKAV--IREELVGLKDVIIFSVKGYPALADKLSGG 931
Query: 838 DLDGDIFFISWDNDLI 853
D DGD+ ++ W+ ++
Sbjct: 932 DYDGDVAWVCWEPAIV 947
>gi|392562423|gb|EIW55603.1| hypothetical protein TRAVEDRAFT_128797, partial [Trametes
versicolor FP-101664 SS1]
Length = 894
Score = 63.5 bits (153), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 74/167 (44%), Gaps = 19/167 (11%)
Query: 701 GYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTM 760
G+ P P L L+ + ++ K++ R VP D G+L ++ V+ +
Sbjct: 422 GFTPQTCPVLRAKLMEVAKKVVTTFKTKYRFAVPMSCSAFIVPDPYGVLGPNEIHVKCSR 481
Query: 761 TREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCI 820
+ F + +T IV G VLVT++PC P DV+ ++AV+ +L + Y + I
Sbjct: 482 ---------RDFVDQEGRQTDIVLGDVLVTRHPCKVPSDVQKVKAVFHERL--RHYCNVI 530
Query: 821 IFPQKG--------ERPHPNECSGGDLDGDIFFISWDNDLIPCETEP 859
+ K +R + GGD DGD + WD L+ EP
Sbjct: 531 VVSTKSHTYQGVPLDRHLASLTGGGDYDGDTMEVFWDPALVGAFKEP 577
>gi|168049572|ref|XP_001777236.1| RNA-directed RNA polymerase [Physcomitrella patens subsp. patens]
gi|162671338|gb|EDQ57891.1| RNA-directed RNA polymerase [Physcomitrella patens subsp. patens]
Length = 1040
Score = 63.2 bits (152), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 98/433 (22%), Positives = 171/433 (39%), Gaps = 84/433 (19%)
Query: 639 LNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKML 698
L++++I LLS V F + ++ L L R L+ + + +
Sbjct: 551 LSQDLIILLSINNVPASFFLELVEKALEKLRTFFTERGQVFRELKSCSPDYAVGDQTLRM 610
Query: 699 LQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRV 758
+ P P + L +++++ L+ C + +P+ L+G D T
Sbjct: 611 IMANIPMSNPQMQNNLKKITQDKIALLRKGC-LPLPQSYYLMGTSDPT------------ 657
Query: 759 TMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVD 818
+E++ ++ + +K V GKVLV KNP H GDV + +AV++ +L YV
Sbjct: 658 ---KEKVLKPNEVAIVKNGEK---VIGKVLVYKNPGKHWGDVHIFDAVWDERLNP--YVG 709
Query: 819 ----CIIFPQKGERPHPNECSGGDLDGDIFF-ISWDNDLIPCET----------EPPMDY 863
I F +G RP +E + DL GD+F+ IS +P + + P +
Sbjct: 710 PTKHAIFFSVRGNRPVVDEIANSDLCGDLFWLISLFTPSLPWKRIGEKINYPIGDGPSNL 769
Query: 864 TGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAH------LVHADR----------- 906
T SR +++ + + + F Y G TAH L AD
Sbjct: 770 T---SRALEYTLFDKFLKSRFTPYKPMSQAGIFWTAHMDRYLSLKDADEYSDELELISES 826
Query: 907 ------------DPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFME-- 952
D DK CLH T M+V ++P L+P FP F++
Sbjct: 827 LEELIDIFYRALDADKTGEELCLHRHTFAWMSV---------KLPRRLEPDCFPHFLKEI 877
Query: 953 REDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAES 1012
+ ++ Y S +LG++Y + ++ I E IA YD E F+ ++
Sbjct: 878 QTNRTYYTSTSILGQIYDMVVRNVDGIGCKP--EETIA---YDPKFEYGRFDRYMERWRG 932
Query: 1013 HKEMYEEEMNALM 1025
+ Y +++ A +
Sbjct: 933 LLQQYNKDIKAAI 945
>gi|452985629|gb|EME85385.1| hypothetical protein MYCFIDRAFT_83458, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 1527
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 119/268 (44%), Gaps = 36/268 (13%)
Query: 688 VDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCF--DE 745
V + +V+ML G P+ E +L+ + + + L K +I + + L+G D
Sbjct: 1001 VSREERIVQMLESGLVPSQEAFLASEVRTMVKTVLDTKKKNFKIPLSRSTTLLGVALADP 1060
Query: 746 TGILNYGQVFVRVTMTR-EELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLE 804
L G++ V T +++ S H ++ L+ +NP + P D++ ++
Sbjct: 1061 LNCLAPGEIHVNFARTFCDKITGMPWSILHEME---------CLIARNPAMAPWDMQKVK 1111
Query: 805 AVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI------PCETE 858
AV++ +L + +I KG+RP GGD DGD F++ W+ L+ P +
Sbjct: 1112 AVFKPELAH--LPNVVILSAKGKRPLAELLQGGDYDGDTFWLCWEPRLVRPFRNHPAPWD 1169
Query: 859 -PPMDYTG--RRSRIMDHDVTLEEIHKFFVDYMIN--------DTLGAISTAH--LVHAD 905
PP+D+ G + +++ V ++ ++ + + LG ++ H L++ +
Sbjct: 1170 PPPIDFFGIKKDPKLLCDYVKQPRSDSQWLKWLADMAETRMRFNLLGVVTKLHERLIYLE 1229
Query: 906 RDPDKARSSKCLHLATLHSMAVDFAKTG 933
RS K L+L LH VD K G
Sbjct: 1230 ---GGIRSRKALYLVHLHDYLVDADKQG 1254
>gi|336376861|gb|EGO05196.1| hypothetical protein SERLA73DRAFT_68825 [Serpula lacrymans var.
lacrymans S7.3]
gi|336389793|gb|EGO30936.1| hypothetical protein SERLADRAFT_432597 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1094
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 81/181 (44%), Gaps = 19/181 (10%)
Query: 697 MLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFV 756
+L G+ P P L+ L + + + R R+ VP + D TG L G++ +
Sbjct: 610 LLDAGFTPGDCPILADKLKHIIDTSVDNYVQRYRVDVPMSCIAFMVPDPTGTLGPGEIHI 669
Query: 757 RVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDY 816
+ S F +T IV G VL+T++PC P DV+ + AV K E + +
Sbjct: 670 K---------SSHPKFLCEDGTETDIVLGDVLLTRHPCKLPTDVQKVRAV--EKAELRHF 718
Query: 817 VDCIIFPQKG-ERPHPNECSGGDLDGDIFFISWDNDLI-PCE------TEPPMDYTGRRS 868
D I+ P KG R + +GGD DGD W +++ P + + PP D + S
Sbjct: 719 KDVIVCPVKGTNRRFADLLAGGDYDGDKAIAIWQKEIVSPFKNADLKYSHPPADLPAQFS 778
Query: 869 R 869
+
Sbjct: 779 K 779
>gi|375281950|gb|AFA45121.1| RNA-directed RNA polymerase 2 [Plenodomus tracheiphilus]
Length = 1382
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 102/232 (43%), Gaps = 31/232 (13%)
Query: 639 LNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALD--VLQKLNGVDSKNILVK 696
L+ E LL TL ++ + +Q + +I REAAL + +K VK
Sbjct: 832 LDIERKQLLETLTEPVKLHNWVTKQGSAIPANGIIAREAALPKCIPEK----------VK 881
Query: 697 MLLQ-GYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVF 755
LL+ G+ P P+L+ L+ + S ++ + R + L+G D +L G+V
Sbjct: 882 YLLRAGFTPQDSPFLARGLMQLIRQRQSVMEQKLRAPLGSATFLLGLADPENVLRPGEVH 941
Query: 756 VRVTMTREELESKDQSFFHRVDDKTSIVKG-KVLVTKNPCLHPGDVRVLEAVYEMKLEEK 814
+ + + E Q++ H + G +VL+ + P D++ + V +L
Sbjct: 942 INFSSPFVD-EFNRQTYRH--------LDGLEVLIARQPACRQSDIQKVRVVAHPQLAH- 991
Query: 815 DYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI------PCETEPP 860
D ++F +G+ P + GGD DGD F+I W++ L+ P PP
Sbjct: 992 -LRDVVVFATRGQYPLAGKLQGGDYDGDTFWICWESILVEPFKNAPAPMNPP 1042
>gi|393236487|gb|EJD44035.1| hypothetical protein AURDEDRAFT_114369 [Auricularia delicata
TFB-10046 SS5]
Length = 1203
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 77/169 (45%), Gaps = 12/169 (7%)
Query: 693 ILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYG 752
+ +++L + P YL +L S + + I +P D G+L G
Sbjct: 695 VCLRLLHARFHPQSCKYLYDILRSVIKTHIESFVKDYHIELPLSAQAFIAPDPFGVLEVG 754
Query: 753 QVFVRV-TMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKL 811
++F + T ++ H DD +++ G VLV ++PC+ P DVR + AV + L
Sbjct: 755 EIFFHPRSHTLRDVNG------HEFDD--NVLLGDVLVGRHPCVLPTDVRKVVAVDSLAL 806
Query: 812 EEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI-PCETEP 859
+ Y D I F KG R N SGGD DGD + W +++ P + P
Sbjct: 807 --RPYRDIIFFSTKGTRSLANILSGGDYDGDTAVLIWQTEVVQPFQNAP 853
>gi|425774605|gb|EKV12907.1| RNA-directed RNA polymerase, putative [Penicillium digitatum Pd1]
gi|425776464|gb|EKV14681.1| RNA-directed RNA polymerase, putative [Penicillium digitatum PHI26]
Length = 1445
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 106/436 (24%), Positives = 171/436 (39%), Gaps = 72/436 (16%)
Query: 555 DGNTYCFSDGIGKISLSFARQVAQKCGLSH-TPSAFQIRYGGYKGVIAVD--RNSFRKLS 611
D +DG IS A Q+ + G++ TPS FQ R G KG+ VD ++S L+
Sbjct: 780 DPTRTVMNDGCALISRPLANQICDQLGITAATPSCFQGRIAGAKGLWMVDCHQSSITTLN 839
Query: 612 -------LRRSMLKFESRNR-----------MLNVTKWSESM-PCFLN------------ 640
+ S LK + V W++ + P LN
Sbjct: 840 DDNIWVQISDSQLKIHPHPQEWVDPVDDEKLTFEVVNWAKPLHPVDLNIQLLAILEYGGN 899
Query: 641 -REIISLLSTLGVK---DEVFEAMQQQQLI----LLGKMLINREAALDVLQKLN---GVD 689
+E I+ L+ GV+ D+ E ++ + LL K+ + E ++L D
Sbjct: 900 VKEYIAKLTRDGVQSLYDDFLEVLRSNSPVGCRALLQKLRPSGEDGTGKARRLEQWVTSD 959
Query: 690 SKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGIL 749
+++I ++ G+ P L M L L +I VP D G+L
Sbjct: 960 AESI-IRFSEAGFAPRDFFPLRMKLRKFITWLLERHVEELKIQVPLSTYAYCIADPYGVL 1018
Query: 750 NYGQVFVRVTMTREELESK-DQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYE 808
+V + + + + + + VD VLV + P P D++ +AV++
Sbjct: 1019 GPDEVHFGFSNNWRDPQGQFEDNLLDGVD---------VLVGRLPAHLPSDIQRRKAVWK 1069
Query: 809 MKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWD--------NDLIPCETEPP 860
+L + + D I+FP G P SGGD DGD +I WD N +P E P
Sbjct: 1070 TEL--RHFKDVIVFPTTGNFPLAGMLSGGDYDGDTPWICWDPIIVERFHNSPMPSH-EYP 1126
Query: 861 MDYTG--RRSRIMDHDVTLEEIHKFFVDYMIN-DTLGAISTAHLVHADRDPDKARSSKCL 917
+++ G + S M + E+ + D+ +N LG + H A + S+K
Sbjct: 1127 VEHYGLTKHSVPMASLKSTEDFLESVFDFNLNLSNLGRCTVEHEKLAYD--ESINSAKAK 1184
Query: 918 HLATLHSMAVDFAKTG 933
LA L VD K G
Sbjct: 1185 ELACLLGHLVDGRKGG 1200
>gi|403160269|ref|XP_003320812.2| hypothetical protein PGTG_02834 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375169485|gb|EFP76393.2| hypothetical protein PGTG_02834 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 1164
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 70/325 (21%), Positives = 134/325 (41%), Gaps = 68/325 (20%)
Query: 576 VAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSFRK---LSLRRSMLKFESRNR-----MLN 627
+ + GLS+ P+A+Q R KG+ + R+ + + +R S K + R + N
Sbjct: 469 IKKALGLSYLPAAYQARILKSKGLWYLSRDLDKDGFWIEIRDSQWKGDVRCKPGDAITFN 528
Query: 628 VTKWS-ESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLI-----LLGKMLINREAALDV 681
+ +S + +NR+ I ++ + V VF Q++ L ++ AL+V
Sbjct: 529 ICNFSTRAKAGHVNRQSIPVIVSRNVPVSVFTDRQREAFKAVLDELTSTNPVHLSQALEV 588
Query: 682 LQKLNGVDSKNI--------------------------------LVKMLLQGYEPNVEPY 709
L + +K + +V++L G+
Sbjct: 589 HGHLLNLKAKRLTTTTNSFVRKEVDEVGVTWEKYSNRPCNAMEEIVELLKSGFTARNNRV 648
Query: 710 LSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKD 769
+ + ++ Q+ + ++ + + D TG L G+VF+R++ R
Sbjct: 649 VDRLNVAG--KQICEKMMNFKVEISSSATIYAIPDPTGTLKEGEVFLRLSRFR------- 699
Query: 770 QSFFHRVDDKTS----IVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQK 825
D KTS I+KG +V ++PC+ P D R ++AV +L Y D ++ +
Sbjct: 700 -------DPKTSVPVNILKGDCVVARSPCVLPTDARKVKAVTNQRL--ACYEDVLVCSIQ 750
Query: 826 GERPHPNECSGGDLDGDIFFISWDN 850
G++ + SGGD DGD+ + WD+
Sbjct: 751 GKKSLLDYLSGGDYDGDVVIVIWDD 775
>gi|324526384|gb|ADY48663.1| RNA-dependent RNA polymerase 2 [Ascaris suum]
Length = 156
Score = 60.5 bits (145), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 78/156 (50%), Gaps = 32/156 (20%)
Query: 524 ARMGQLFSSSKQTLVVPV-----QDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQ 578
ARMGQ F+ +K+ + + + ++I ++ S G Y FSDG G++S FA+++A
Sbjct: 2 ARMGQCFTQAKECSIKLLHRRYNKTFDIIGGMD--SSGEPYTFSDGCGRLSPEFAQRIAD 59
Query: 579 KCGLSH-TPSAFQIRYGGYKGVIAVD-----RNSF-RKLSLRRSMLKFESRNRM------ 625
L PS FQIR+ G KGV++VD R S+ + ++ +M + +N++
Sbjct: 60 DLHLGKCVPSCFQIRFRGIKGVVSVDPWLTERASWATEHNIADNMENYNKKNKLYMLFRP 119
Query: 626 ------------LNVTKWSESMPCFLNREIISLLST 649
+ + K+S P LNR I++L T
Sbjct: 120 SQDKFHAPLSHKIEIVKYSSPTPVCLNRPYIAILLT 155
>gi|238597177|ref|XP_002394255.1| hypothetical protein MPER_05887 [Moniliophthora perniciosa FA553]
gi|215462994|gb|EEB95185.1| hypothetical protein MPER_05887 [Moniliophthora perniciosa FA553]
Length = 279
Score = 60.5 bits (145), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 102/221 (46%), Gaps = 30/221 (13%)
Query: 775 RVDDKTSI-VKGKVLVTKNPCLHPGDVRVLEAVYEMKLEE----KDYVDCIIFPQKGERP 829
R DD I ++G+ ++++P HPGDV+ + A+ + ++ + ++ P +G+R
Sbjct: 1 RPDDPEPIYLEGRCTISRSPVAHPGDVQTVHAIGKPPTDKLCLFAHMKNVVVLPSRGKR- 59
Query: 830 HPNECSGGDLDGDIFFISWDNDLIPCETEPPMD-----YTGRRSRIMDHDVTLE--EIHK 882
+ GD+ +D P E +PP+D Y + + D T+E +I
Sbjct: 60 ---SLASKLGGGDLDGDLYDVITYP-ELQPPLDNKPMSYEAGETLTLKEDRTVEPRDICD 115
Query: 883 FFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHS----MAVDFAKTGAPAEM 938
F V+Y+ +D LG +S LV AD+ D C LA L S AVD+ K G P ++
Sbjct: 116 FIVNYINSDVLGLLSDRLLVIADQSKDGIYDRDCEKLAKLCSQTTYQAVDYPKNGIPVDL 175
Query: 939 PLALKPKEF----PDFMERE-DKPR----YISFGVLGKLYR 970
P PD+ E PR Y+S LG+++R
Sbjct: 176 DKDRLPNTLIRCKPDWHAAEVVDPRGTDYYMSTRALGEMFR 216
>gi|242208926|ref|XP_002470312.1| predicted protein [Postia placenta Mad-698-R]
gi|220730619|gb|EED84473.1| predicted protein [Postia placenta Mad-698-R]
Length = 842
Score = 59.7 bits (143), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 84/201 (41%), Gaps = 41/201 (20%)
Query: 728 RCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKV 787
R R+ VP+ D G+L GQV ++ +R L +D T IV G+V
Sbjct: 497 RYRVDVPQSCTAYIVPDPLGVLEPGQVHIK--SSRRNLVDQDGR-------PTDIVLGEV 547
Query: 788 LVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCI-------IFPQKGERPHPNECS-GGDL 839
LVT++PC P DV+ + AV+ KL YVD I +F +K H C+ GGD
Sbjct: 548 LVTRHPCKVPTDVQKVTAVFNQKLSS--YVDVIVVSIKDHVFNKKLLNRHLASCTGGGDY 605
Query: 840 DGDIFFISWDNDLI------------------PC---ETEPPMDYTGRRSRIMDHDVTLE 878
DGD W+ L+ C TE + R D D+
Sbjct: 606 DGDTMEAFWNPALVEGFRNAETKFLNEPKNVEKCLVKNTETVAQFLSRNPLSTDKDIMQP 665
Query: 879 EIHKFFVDYMINDTL-GAIST 898
EI K+ + + + ++ G ST
Sbjct: 666 EIQKYLLGSLRDSSMVGTYST 686
>gi|384495848|gb|EIE86339.1| hypothetical protein RO3G_11050 [Rhizopus delemar RA 99-880]
Length = 150
Score = 58.5 bits (140), Expect = 2e-05, Method: Composition-based stats.
Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 27/138 (19%)
Query: 1005 AFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNL-------RNRASYLQRDNRRYGD 1057
+++ A ++ Y+ ++ AL+N++G TE E+LTG + + + Y Q DN
Sbjct: 3 SYINKARELRDHYDVKLAALINHHGVKTETELLTGYVVKWEKKGKGKTVYKQDDN----- 57
Query: 1058 MKDRILLSAKNLQNE-----AKEWFGSS-----CKENEHPQLASAWYHVTYSPSYCKER- 1106
+L S + L+NE +E+ G K NE A+AWY+VTY P K+
Sbjct: 58 ----MLKSVRQLKNEWVDEFEREFIGKHKQIDLSKRNEIYAKAAAWYYVTYHPDERKKYG 113
Query: 1107 MALLSFPWIVGDILLNIK 1124
+ SFPW + L +IK
Sbjct: 114 LEYFSFPWTIYKYLCHIK 131
>gi|255546343|ref|XP_002514231.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
gi|223546687|gb|EEF48185.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
Length = 114
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 6/69 (8%)
Query: 783 VKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVD----CIIFPQKGERPHPNECSGGD 838
+ GKVLV +NP LH GD+ VL+A Y LE D+V I FP KG + +E +GGD
Sbjct: 28 ISGKVLVYRNPGLHFGDIHVLKATYVKALE--DFVGNAKYAIFFPCKGPQSLADEIAGGD 85
Query: 839 LDGDIFFIS 847
+ D++F+S
Sbjct: 86 FNNDMYFVS 94
>gi|402224034|gb|EJU04097.1| hypothetical protein DACRYDRAFT_14289 [Dacryopinax sp. DJM-731 SS1]
Length = 1239
Score = 57.8 bits (138), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 59/107 (55%), Gaps = 13/107 (12%)
Query: 749 LNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYE 808
L G++F+R M+RE ++S R T +V G VL+ ++PC P D+++++AV
Sbjct: 881 LKPGEIFLR--MSRERVDS-------RTGMATDVVVGDVLIVRHPCKLPSDIQLVKAVDC 931
Query: 809 MKLEEKDYVDCIIFPQKGERPHP--NECSGGDLDGDIFFISWDNDLI 853
+L + + D II +P ++ +GGD DGD I WD DLI
Sbjct: 932 PEL--RHWKDVIITSVDRSQPRSLLSKLAGGDYDGDTVVIYWDKDLI 976
Score = 45.1 bits (105), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 44/87 (50%)
Query: 514 NKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFA 573
N+ + ++K AAR + S++ + + +++ IPD E + + +DG G ++ S
Sbjct: 571 NQQQIMTKWAARFALMLSTTSPGVSIEPENIHFIPDEEPGKPQSHHVLTDGAGYLNGSAM 630
Query: 574 RQVAQKCGLSHTPSAFQIRYGGYKGVI 600
Q+ + +A Q R+GG KG+
Sbjct: 631 LQICNRLKWGKVQAAVQARFGGAKGMF 657
>gi|395335049|gb|EJF67425.1| hypothetical protein DICSQDRAFT_177042 [Dichomitus squalens
LYAD-421 SS1]
Length = 1306
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 65/141 (46%), Gaps = 13/141 (9%)
Query: 722 LSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMT-REELESKDQSFFHRVDDKT 780
+ D+ S I VP D GILN ++ + T ++ LE D
Sbjct: 817 IDDIISDYHISVPLSAEAFIIPDPYGILNEREIHFKSTKNLKDPLE----------DMNP 866
Query: 781 SIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLD 840
+ G+VL+ +NPC P DV+ + AV L Y D I+ P G R + +GGD D
Sbjct: 867 HQLLGEVLIYRNPCRLPSDVQKVTAVQCDVLAA--YTDVIVLPTVGARSFASYLAGGDYD 924
Query: 841 GDIFFISWDNDLIPCETEPPM 861
GD+ + +D+ L+ T PP+
Sbjct: 925 GDVAVVIYDDRLVKDFTTPPV 945
Score = 40.0 bits (92), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 519 VSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTY------CFSDGIGKISLSF 572
+SK A R FS S + + ++++ + D V +D + +DG G ++ +
Sbjct: 518 ISKWATRFDLGFSVSVPVISIALENMHFMKDEAVLNDDQDWKPPPECILTDGCGWMNGAA 577
Query: 573 ARQVAQKCGLSHTPSAFQIRYGGYKGV 599
+A++ GL P+A Q R+GG KG+
Sbjct: 578 LSALAKQIGLEERPTAVQGRFGGAKGL 604
>gi|302695543|ref|XP_003037450.1| hypothetical protein SCHCODRAFT_80935 [Schizophyllum commune H4-8]
gi|300111147|gb|EFJ02548.1| hypothetical protein SCHCODRAFT_80935 [Schizophyllum commune H4-8]
Length = 409
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 42/64 (65%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKA 64
+V+VS + A+DL F E KLG+N+V I+TDR + +S+GIG V+F ++D KA
Sbjct: 77 SVFVSQLAARLTARDLGYFFEDKLGENTVMDARIVTDRISRRSKGIGYVEFRTVDLVDKA 136
Query: 65 QNLS 68
+LS
Sbjct: 137 LDLS 140
>gi|299747708|ref|XP_001837206.2| RNA-directed RNA polymerase [Coprinopsis cinerea okayama7#130]
gi|298407644|gb|EAU84823.2| RNA-directed RNA polymerase [Coprinopsis cinerea okayama7#130]
Length = 1221
Score = 57.4 bits (137), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 18/126 (14%)
Query: 744 DETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVL 803
D G+L G+++ + S ++ T + G VLVT+NP P DV+
Sbjct: 723 DTRGVLEEGEIYFK---------SSSRNLLRPNGTLTDELIGDVLVTRNPSKLPTDVQKW 773
Query: 804 EAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI-------PCE 856
AV+ +L +D VD ++ KG R + +GGD DGD + WD ++ P
Sbjct: 774 RAVHRPEL--RDLVDVVVLSTKGARRAADWLAGGDYDGDKVTVIWDPKIVDPFKTADPSH 831
Query: 857 TEPPMD 862
+PP D
Sbjct: 832 GDPPDD 837
Score = 44.7 bits (104), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 74/153 (48%), Gaps = 14/153 (9%)
Query: 517 RSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQV 576
+ ++K A+R S+S L++ +++ D+E G+ +DG G +S A Q+
Sbjct: 423 QKMAKWASRFALGLSNSVPGLLLKPENIRFKDDIEHPETGS--VMTDGAGSMSRMVATQL 480
Query: 577 AQKCGLSHTPSAFQIRYGGYKGVIAVDRNS--------FRKLSLRRSMLKFES---RNRM 625
+ G + P+A Q+R G KG++ D + + S R+ + E+ +R+
Sbjct: 481 HRNLGWDYRPTAIQVRVFGSKGLLVDDTDGDHEQEPIVWLTPSQRKIFYRLENCDPVHRV 540
Query: 626 LNVTKWSES-MPCFLNREIISLLSTLGVKDEVF 657
++V + S++ C L+ E I L+ V EVF
Sbjct: 541 IDVLRASQTKTQCRLSVETIINLAENKVPKEVF 573
>gi|341039071|gb|EGS24063.1| hypothetical protein CTHT_0007750 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 392
Score = 56.6 bits (135), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 59/122 (48%), Gaps = 25/122 (20%)
Query: 835 SGGDLDGDIFFISWDNDLIPC----ETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMIN 890
SGGDLDGD+F + WD L ET P DY ++ ++T+ ++ FF D+
Sbjct: 110 SGGDLDGDLFHVIWDPALFNAKPKLETFEPADYPRIPPLELEGEITIRDMANFFADF--- 166
Query: 891 DTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEF-PD 949
T+ A DPD C+ LA L S AV+ +KTG P +M K + + PD
Sbjct: 167 KTILA-----------DPD------CMKLAKLASSAVNLSKTGRPVDMTQLPKCRRWRPD 209
Query: 950 FM 951
F
Sbjct: 210 FF 211
>gi|449541903|gb|EMD32884.1| hypothetical protein CERSUDRAFT_142953, partial [Ceriporiopsis
subvermispora B]
Length = 125
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 63/117 (53%), Gaps = 4/117 (3%)
Query: 462 ILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSK 521
++ + Q G+++ Y F S SQLR+ ++ +N + ++ +G F++I + +K
Sbjct: 1 MIRLFQAGLMLNGVQYRFYGHSNSQLRSRGCFLREANTDDELDEKIYSLGDFHRIMTAAK 60
Query: 522 CAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQ 578
A R+G LFS ++ V+ + + I D+ V + FSDG G +S FA QV++
Sbjct: 61 RAKRIGLLFSQAELDWVLDPRHTKDIDDIVVNGEN----FSDGCGLMSKRFATQVSR 113
>gi|409051063|gb|EKM60539.1| hypothetical protein PHACADRAFT_82474, partial [Phanerochaete
carnosa HHB-10118-sp]
Length = 639
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 66/149 (44%), Gaps = 26/149 (17%)
Query: 727 SRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGK 786
S+ R+ VP D TG+L G+++V + + K ++ ++ G
Sbjct: 392 SKYRVNVPMSCSAWAVPDPTGVLEAGEIYVESSAPLLSADGKTEA---------DVIVGD 442
Query: 787 VLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHP--------NECSGGD 838
VL+T++PC P DV+ ++AV +L + Y D ++ KG R + GGD
Sbjct: 443 VLITRHPCKVPSDVQKVKAVNRREL--RGYKDLVVVSTKGHRVQTQLLDRHLLSMLGGGD 500
Query: 839 LDGDIFFISWDNDLI-------PCETEPP 860
DGD + W+ +L+ P PP
Sbjct: 501 YDGDRVQVFWNPELVDGFQPADPAFATPP 529
>gi|392570629|gb|EIW63801.1| hypothetical protein TRAVEDRAFT_138069 [Trametes versicolor
FP-101664 SS1]
Length = 1030
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 11/162 (6%)
Query: 692 NILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNY 751
+++ +L G+ P P L L N + D+ + +P D G+L
Sbjct: 533 GVVMDLLQAGFHPLRLPALYEKLRKITSNVIEDIIRDFHVSIPLSAEAFIVPDPYGVLKP 592
Query: 752 GQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKL 811
G++ R + ++L+S + D +I+ G VL+ +NP P DV+ + AV L
Sbjct: 593 GEIHFR---SSKDLKSALE------DLNPNILLGDVLIYRNPNRLPSDVQKVTAVQHELL 643
Query: 812 EEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI 853
DY D I+ P +G + +GGD DGD+ +D L+
Sbjct: 644 --ADYADVIVLPSRGPCSFASMLAGGDYDGDVCVCIYDPRLV 683
>gi|395331410|gb|EJF63791.1| hypothetical protein DICSQDRAFT_55194 [Dichomitus squalens LYAD-421
SS1]
Length = 1069
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 77/184 (41%), Gaps = 28/184 (15%)
Query: 695 VKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQV 754
+ ++ G+ P+ L L + + +++ R VP D G+L +V
Sbjct: 567 MTLIDSGFRPDDCAVLGAKLREVAKKVVKTFQTKYRFAVPMSCSAFIVPDPYGVLKANEV 626
Query: 755 FVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEK 814
VR +R L T +V G VLVT++PC P DV+ ++AV+ +L +
Sbjct: 627 HVR--SSRRNLPDHQGRL-------TDLVLGDVLVTRHPCKVPSDVQKVKAVFHERL--R 675
Query: 815 DYVDCIIFPQKGE--RPHP------NECSGGDLDGDIFFISWDNDLIPC---------ET 857
Y D I+ + + R P + GGD DGD + WD D++
Sbjct: 676 HYCDVIVVSTESQTFRGEPLNRHLASLTGGGDYDGDTMEVFWDPDIVNAFHIPDPRVFAV 735
Query: 858 EPPM 861
EPPM
Sbjct: 736 EPPM 739
>gi|361066517|gb|AEW07570.1| Pinus taeda anonymous locus 0_5352_01 genomic sequence
gi|383149658|gb|AFG56735.1| Pinus taeda anonymous locus 0_5352_01 genomic sequence
gi|383149660|gb|AFG56736.1| Pinus taeda anonymous locus 0_5352_01 genomic sequence
gi|383149662|gb|AFG56737.1| Pinus taeda anonymous locus 0_5352_01 genomic sequence
gi|383149664|gb|AFG56738.1| Pinus taeda anonymous locus 0_5352_01 genomic sequence
gi|383149666|gb|AFG56739.1| Pinus taeda anonymous locus 0_5352_01 genomic sequence
gi|383149668|gb|AFG56740.1| Pinus taeda anonymous locus 0_5352_01 genomic sequence
gi|383149670|gb|AFG56741.1| Pinus taeda anonymous locus 0_5352_01 genomic sequence
gi|383149672|gb|AFG56742.1| Pinus taeda anonymous locus 0_5352_01 genomic sequence
gi|383149674|gb|AFG56743.1| Pinus taeda anonymous locus 0_5352_01 genomic sequence
gi|383149676|gb|AFG56744.1| Pinus taeda anonymous locus 0_5352_01 genomic sequence
gi|383149678|gb|AFG56745.1| Pinus taeda anonymous locus 0_5352_01 genomic sequence
gi|383149680|gb|AFG56746.1| Pinus taeda anonymous locus 0_5352_01 genomic sequence
gi|383149682|gb|AFG56747.1| Pinus taeda anonymous locus 0_5352_01 genomic sequence
gi|383149684|gb|AFG56748.1| Pinus taeda anonymous locus 0_5352_01 genomic sequence
gi|383149686|gb|AFG56749.1| Pinus taeda anonymous locus 0_5352_01 genomic sequence
gi|383149688|gb|AFG56750.1| Pinus taeda anonymous locus 0_5352_01 genomic sequence
gi|383149690|gb|AFG56751.1| Pinus taeda anonymous locus 0_5352_01 genomic sequence
gi|383149692|gb|AFG56752.1| Pinus taeda anonymous locus 0_5352_01 genomic sequence
Length = 67
Score = 55.8 bits (133), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 1029 GASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSCKENEHPQ 1088
G E +I++GN+ + ++++ N+R GD+++ IL K+L+ EA+ WFG ++
Sbjct: 1 GVRNEADIISGNIASLSNFVG-SNKRKGDIRETILSGVKSLKQEARRWFGDISNTDKQFA 59
Query: 1089 LASAWYHV 1096
ASAWYHV
Sbjct: 60 KASAWYHV 67
>gi|313243221|emb|CBY39877.1| unnamed protein product [Oikopleura dioica]
Length = 265
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 88/192 (45%), Gaps = 36/192 (18%)
Query: 509 WMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKI 568
+ G F KI++V K AAR+G L S+++ ++D + + ++ G F+DG G++
Sbjct: 29 YFGDFEKIKTVPKYAARLGLLISATRHAEF--IEDGKWQLEKDIVHHGCN--FTDGCGRM 84
Query: 569 SLSFARQVA--QKCGLSH------TPSAFQIRYGGYKGVIAVDRN---SFRKLSLRRSML 617
S A++ + C + PS QIR+ G KG++ D + S + + LR S
Sbjct: 85 STQLAQRFTLNKHCANRYKHQSFEVPSIVQIRFMGCKGILVHDPSLDFSGKDVILRESQK 144
Query: 618 KFE------------------SRNRMLNVTKWSESMPCF---LNREIISLLSTLGVKDEV 656
KFE R+L + + ES P LN++ + +LS LG+ +
Sbjct: 145 KFEWNFNTIKGRLKYTEKKQGRTGRLLGICRGGESKPFVFGRLNKQFVLVLSALGIPNTT 204
Query: 657 FEAMQQQQLILL 668
+Q + L+
Sbjct: 205 LLEIQNEYFELV 216
>gi|392597434|gb|EIW86756.1| splicing factor CC1-like protein [Coniophora puteana RWD-64-598
SS2]
Length = 360
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 40/64 (62%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKA 64
+V+VS + A+DL F E KLG+ +V I+TDR + +S+GIG V+F S+D KA
Sbjct: 31 SVFVSQLAARLTARDLGYFFEDKLGEGTVLDSRIVTDRISRRSKGIGYVEFRSIDLVEKA 90
Query: 65 QNLS 68
LS
Sbjct: 91 LGLS 94
>gi|361066837|gb|AEW07730.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
Length = 125
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 19/93 (20%)
Query: 1051 DNRRYGDMKDRILLSAKNLQNEAKEWFGSS--------CKENEHPQLASAWYHVTYSPSY 1102
++R+ G++K+R+ + + L+NE + F CK +E+ ASAWYHVTY P++
Sbjct: 8 NSRKQGEIKERLQHAYRALRNEFRLIFQGKTDGETPEPCKRSEYEAKASAWYHVTYHPTW 67
Query: 1103 CKERM-----------ALLSFPWIVGDILLNIK 1124
++ LLSFPWI D L IK
Sbjct: 68 VQKARELTESDGYFTSPLLSFPWISVDYLAQIK 100
>gi|383145806|gb|AFG54505.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
gi|383145808|gb|AFG54506.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
gi|383145810|gb|AFG54507.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
gi|383145812|gb|AFG54508.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
gi|383145814|gb|AFG54509.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
gi|383145816|gb|AFG54510.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
gi|383145818|gb|AFG54511.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
gi|383145822|gb|AFG54513.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
gi|383145824|gb|AFG54514.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
gi|383145826|gb|AFG54515.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
gi|383145828|gb|AFG54516.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
gi|383145830|gb|AFG54517.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
gi|383145832|gb|AFG54518.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
gi|383145834|gb|AFG54519.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
gi|383145836|gb|AFG54520.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
gi|383145838|gb|AFG54521.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
gi|383145840|gb|AFG54522.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
Length = 125
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 19/93 (20%)
Query: 1051 DNRRYGDMKDRILLSAKNLQNEAKEWFGSS--------CKENEHPQLASAWYHVTYSPSY 1102
++R+ G++K+R+ + + L+NE + F CK +E+ ASAWYHVTY P++
Sbjct: 8 NSRKQGEIKERLQHAYRALRNEFRLIFQGKTDGETPEPCKRSEYEAKASAWYHVTYHPTW 67
Query: 1103 CKERM-----------ALLSFPWIVGDILLNIK 1124
++ LLSFPWI D L IK
Sbjct: 68 VQKARELTELDGYFTSPLLSFPWISVDYLAQIK 100
>gi|383145820|gb|AFG54512.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
Length = 125
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 19/93 (20%)
Query: 1051 DNRRYGDMKDRILLSAKNLQNEAKEWFGSS--------CKENEHPQLASAWYHVTYSPSY 1102
++R+ G++K+R+ + + L+NE + F CK +E+ ASAWYHVTY P++
Sbjct: 8 NSRKQGEIKERLQHAYRALRNEFRLIFQGKTDGEIPEPCKRSEYEAKASAWYHVTYHPTW 67
Query: 1103 CKERM-----------ALLSFPWIVGDILLNIK 1124
++ LLSFPWI D L IK
Sbjct: 68 VQKARELTELDGYFTSPLLSFPWISVDYLAQIK 100
>gi|302673317|ref|XP_003026345.1| expressed protein [Schizophyllum commune H4-8]
gi|300100027|gb|EFI91442.1| expressed protein [Schizophyllum commune H4-8]
Length = 984
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 13/155 (8%)
Query: 694 LVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCF--DETGILNY 751
+V++L G++P YL + + + R+ VP R L D G+LN
Sbjct: 505 VVELLQAGFKPQECEYLRIKMAKVLDMVCQSAVEDYRVPVPDSRGLNAFVVPDPLGVLNE 564
Query: 752 GQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKL 811
++F + + ++ K+Q V+G+V+V + P P D+R ++AV L
Sbjct: 565 DEIFYMPSPSF--MDPKEQVMVQ-------AVEGEVIVGRYPIRLPSDLRKVKAVNRPAL 615
Query: 812 EEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFI 846
+ Y + I+ P GER + SGGD DGDI F+
Sbjct: 616 HQ--YTNVILVPTVGERSLVSLLSGGDCDGDILFM 648
>gi|336376609|gb|EGO04944.1| hypothetical protein SERLA73DRAFT_174031 [Serpula lacrymans var.
lacrymans S7.3]
Length = 583
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 41/64 (64%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKA 64
+V+VS + A+DL F E KLG+ +V I+TDR + +S+GIG V+F S+D KA
Sbjct: 254 SVFVSQLAARLTARDLGYFFEDKLGEGTVMDSRIVTDRLSRRSKGIGYVEFRSIDMVEKA 313
Query: 65 QNLS 68
+LS
Sbjct: 314 ISLS 317
>gi|315048949|ref|XP_003173849.1| RNA directed RNA polymerase [Arthroderma gypseum CBS 118893]
gi|311341816|gb|EFR01019.1| RNA directed RNA polymerase [Arthroderma gypseum CBS 118893]
Length = 1245
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 70/305 (22%), Positives = 117/305 (38%), Gaps = 45/305 (14%)
Query: 561 FSDGIGKISLSFARQVAQKCGLSHTPSAFQ-IRYGGYKGVI--AVDRNSFRKLSLRRSML 617
SDG +S S R +A L P+ FQ G +K + R ++K + RS++
Sbjct: 634 MSDGCAMMSRSLGRAIADSMRLPKVPACFQESPAGAFKPTVFYGTARQGYQK-GVMRSLI 692
Query: 618 KFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREA 677
+ E+ +++I +L L A QQ + + +
Sbjct: 693 QEEADEHY---------------KKLIQIL--LNGDSAACRAWAQQ--------VRDSSS 727
Query: 678 ALDVLQKLNGVDSKNILVKMLLQ-GYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKG 736
+ L S V MLL GY P+ ++ + H + +I + K
Sbjct: 728 HVTALNDTAFPQSTIRRVNMLLDAGYLPSKLLFVWELFKQHFIDGFVKRLDAIKIKISKS 787
Query: 737 RLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLH 796
D G+L G++++ T E D T + VLV++ P
Sbjct: 788 TYAYCIPDHYGVLEEGEIYLDFGDTWE-------------DGTTDLDGIDVLVSRAPAHF 834
Query: 797 PGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCE 856
P DV+ AVY +L + + IF KG+ P + SGGD DGD ++ W+ +++
Sbjct: 835 PSDVQKCRAVYRPEL--RHLKNVAIFSTKGKVPLASLLSGGDYDGDQVWVCWEPEIVKPF 892
Query: 857 TEPPM 861
PM
Sbjct: 893 VNYPM 897
>gi|336389603|gb|EGO30746.1| hypothetical protein SERLADRAFT_455043 [Serpula lacrymans var.
lacrymans S7.9]
Length = 583
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 41/64 (64%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKA 64
+V+VS + A+DL F E KLG+ +V I+TDR + +S+GIG V+F S+D KA
Sbjct: 254 SVFVSQLAARLTARDLGYFFEDKLGEGTVMDSRIVTDRLSRRSKGIGYVEFRSIDMVEKA 313
Query: 65 QNLS 68
+LS
Sbjct: 314 ISLS 317
>gi|299755304|ref|XP_002912089.1| hypothetical protein CC1G_13622 [Coprinopsis cinerea okayama7#130]
gi|298411164|gb|EFI28595.1| hypothetical protein CC1G_13622 [Coprinopsis cinerea okayama7#130]
Length = 580
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 58/104 (55%), Gaps = 11/104 (10%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKA 64
+V+VS + A+DL F E KLG+ +V I+TDR + +S+GIG V+F S+D KA
Sbjct: 253 SVFVSQLAARLTARDLGYFFEDKLGEGTVMDARIVTDRLSRRSKGIGYVEFRSIDLVEKA 312
Query: 65 QNLSLNDKLVFN-SQNLKISETHSDIVPRPVKAQHRVEDGVLHV 107
++L+ +V N++++E+ + + DG LH+
Sbjct: 313 --IALSGTIVMGLPINVQLTESE--------RNKSHAGDGSLHL 346
>gi|403364990|gb|EJY82270.1| RNA-dependent RNA polymerase [Oxytricha trifallax]
Length = 126
Score = 54.7 bits (130), Expect = 3e-04, Method: Composition-based stats.
Identities = 35/108 (32%), Positives = 57/108 (52%), Gaps = 5/108 (4%)
Query: 524 ARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLS 583
AR QLF+ ++ + +E I D+ GN F+DG G IS A ++ + GL
Sbjct: 12 ARAAQLFTGTRYICELKKTQIEYIGDIVNYRKGN---FTDGNGCISQELANRINRMYGLE 68
Query: 584 HTPSAFQIRYGGYKGVIAVDRNSFRK-LSLRRSMLKFESRNRMLNVTK 630
SA+Q R GG KG + V++ + + +R +M KFE+ + LN+ +
Sbjct: 69 DC-SAYQFRLGGCKGTLVVNQELQEEVIQIRNTMKKFENSDTSLNIAR 115
>gi|393218616|gb|EJD04104.1| splicing factor, CC1-like protein [Fomitiporia mediterranea MF3/22]
Length = 464
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 41/64 (64%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKA 64
+V+VS + A+DL F E KLG NSV + I+TDR + +S+GI V+F S++ KA
Sbjct: 136 SVFVSQLAARMTARDLGYFFEDKLGDNSVLDVRIVTDRISRRSKGIAYVEFGSIELVDKA 195
Query: 65 QNLS 68
+L+
Sbjct: 196 ISLT 199
>gi|440493517|gb|ELQ75977.1| RNA-directed RNA polymerase QDE-1 [Trachipleistophora hominis]
Length = 1082
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 68/144 (47%), Gaps = 32/144 (22%)
Query: 394 VTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKP 453
V P+ I C+ P+ SN +++NF S+ +R+TF N ++
Sbjct: 836 VYPLSIACMYPKNNLSNRILRNF----SNMIRITF---------KNTCDENVM------- 875
Query: 454 YRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFA----SNDEVSAEDVRGW 509
I I+ +GI I D+ Y F+A S+SQLR+NS W + N V ++ VR W
Sbjct: 876 ------EYIREIMSNGITI-DRPYYFVATSSSQLRSNSAWFISPYRKGNVLVGSDYVRNW 928
Query: 510 MGCFNKIRSVSKCAARMGQLFSSS 533
MG + ++ K R+G SS+
Sbjct: 929 MGVI-ECDNIGKYMIRVGLGLSST 951
>gi|395334381|gb|EJF66757.1| splicing factor CC1-like protein [Dichomitus squalens LYAD-421 SS1]
Length = 624
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 41/64 (64%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKA 64
+V+VS + A+DL F E KLG+N+V I+TDR + +S+GIG V+F S++ KA
Sbjct: 294 SVFVSQLAARLTARDLGYFFEDKLGENTVMDSRIVTDRISRRSKGIGYVEFRSVELVDKA 353
Query: 65 QNLS 68
LS
Sbjct: 354 IALS 357
>gi|328861348|gb|EGG10451.1| hypothetical protein MELLADRAFT_103030 [Melampsora larici-populina
98AG31]
Length = 1075
Score = 54.3 bits (129), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Query: 779 KTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGD 838
+ I+ G L+ ++PC P DVR ++ V L+ + Y D I+ +G+R + SGGD
Sbjct: 592 RHGILAGPALIWRSPCAAPIDVRKIQLVANEHLQ-RVYFDVIVCSTRGDRAMLSMLSGGD 650
Query: 839 LDGDIFFISWDNDLI-PCETEPPMDY 863
DGD ++WD L+ P + P Y
Sbjct: 651 YDGDQVSVTWDKRLVDPFQNADPGAY 676
>gi|397613827|gb|EJK62448.1| hypothetical protein THAOC_16940 [Thalassiosira oceanica]
Length = 552
Score = 54.3 bits (129), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 61/126 (48%), Gaps = 29/126 (23%)
Query: 739 LIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPG 798
++G D T + +GQVF+ F H + KV+V+++PC++
Sbjct: 271 VVGVADPTNSIPFGQVFI-------------TGFKH-----IKTYQDKVIVSRSPCINNL 312
Query: 799 DVRVLEAVY----EMKLEEKDYVDCIIF-------PQKGERPHPNECSGGDLDGDIFFIS 847
D+R + V +M +E ++++ + F P G + P + + GDLDGD +FI
Sbjct: 313 DMRTAKTVVAKPRKMNHDEWEWLNSLPFGVLVFPNPPTGTQSMPEQIANGDLDGDRYFIC 372
Query: 848 WDNDLI 853
WD+ L+
Sbjct: 373 WDDALV 378
>gi|403412344|emb|CCL99044.1| predicted protein [Fibroporia radiculosa]
Length = 599
Score = 54.3 bits (129), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 40/64 (62%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKA 64
+V+VS + A+DL F E KLG+ SV I+TDR + +S+GIG V+F S++ KA
Sbjct: 269 SVFVSQLAARLTARDLGYFFEDKLGEGSVMDSRIVTDRISRRSKGIGYVEFRSVELVDKA 328
Query: 65 QNLS 68
LS
Sbjct: 329 LGLS 332
>gi|402576169|gb|EJW70128.1| hypothetical protein WUBG_18968 [Wuchereria bancrofti]
Length = 123
Score = 54.3 bits (129), Expect = 4e-04, Method: Composition-based stats.
Identities = 35/97 (36%), Positives = 55/97 (56%), Gaps = 8/97 (8%)
Query: 536 TLVVPVQDVEMIPDVEVTSDGN--TYCFSDGIGKISLSFARQVAQKCGL-SHTPSAFQIR 592
T+++ Q D+ D N +Y FSDG+GK+S FA ++A GL + PS +QIR
Sbjct: 7 TVILKRQKYNKTYDIIGGRDTNQASYTFSDGVGKVSKEFAEKIAFDIGLGTSVPSCYQIR 66
Query: 593 YGGYKGVIAVDRN--SFRKLSLRRSMLKFESRNRMLN 627
+ G KGV++VD N ++ +L +++ NRM N
Sbjct: 67 HRGIKGVLSVDPNLDQRKQWTLANNIV---DNNRMTN 100
>gi|413938755|gb|AFW73306.1| hypothetical protein ZEAMMB73_707398 [Zea mays]
Length = 208
Score = 53.9 bits (128), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 64/141 (45%), Gaps = 1/141 (0%)
Query: 1 MVLATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRS-NWKSRGIGRVQFTSLD 59
MV T+ V T A+ + LFLE G ++ AL++ R+ + SR VQF S +
Sbjct: 1 MVGRTIQVQGFALTDSAESVKLFLERIAGAGTICALKLRHPRNISANSRAFAIVQFQSQE 60
Query: 60 FKSKAQNLSLNDKLVFNSQNLKISETHSDIVPRPVKAQHRVEDGVLHVGVMCKEERLRVL 119
S +N + L L+ DIVPRP +ED VLH+G + KE L L
Sbjct: 61 SASLVENAAQRQVLKIGRFYLRTRPADRDIVPRPRIPMFSLEDIVLHLGCLVKENILSAL 120
Query: 120 QTFEGVRGWLLPDRRRLEFWV 140
V D +++ F++
Sbjct: 121 FRASNVSVQFGFDMKKIYFYL 141
>gi|401882100|gb|EJT46373.1| RNA-directed RNA polymerase [Trichosporon asahii var. asahii CBS
2479]
Length = 1106
Score = 53.9 bits (128), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 91/379 (24%), Positives = 144/379 (37%), Gaps = 81/379 (21%)
Query: 541 VQDVEMIPDVEVTSDGNTY------CFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYG 594
+Q + +IPD+ + N SDG G +S L P + Q+R G
Sbjct: 422 LQLLGLIPDIVCLTATNPSDPEACEILSDGCGLMSQKILHH-PFFADLRWPPCSVQMRLG 480
Query: 595 GYKGVIAV-----DRNSFRKLSLRRSMLKFESRNRM--------LNVTKWSE-SMPCFLN 640
G KGV+++ + + LR SM+K +S L+V K + C L+
Sbjct: 481 GSKGVLSLMSREQEEEYEADVILRPSMIKSKSAAGFSDDPSVLTLDVLKVDGLKVGCNLS 540
Query: 641 REIISLLSTLGVKDEVFEAMQQQQLILLGKMLIN-----------REAALDVLQKLNGVD 689
E I ++ GV +V A + + + + L+ R+ L + L GV
Sbjct: 541 SEAIIIMEDRGVPPDVLIAKAELEFEKIRENLLPVPHPGENEDDVRQRLLHAVYTLGGVG 600
Query: 690 S-----------KNILVKMLL-----------------QGYEPNVEPYLS----MMLLSH 717
S K+ V L G+ P+ ++S M+ S
Sbjct: 601 SEREKRRCRQLGKSTKVAGLSLESTQQDEHEEDTSVAENGFLPDESVWMSQKLKFMVRSL 660
Query: 718 HENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVD 777
+ +SD K + V + + D G+L ++++ S R
Sbjct: 661 TDRAVSDFK----LPVDQSLSALIVPDTLGVLKPNEIYI--------APSSATLVNPRTM 708
Query: 778 DKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECS-- 835
S V+G VL+ ++PC P DVR + AVY KL K DCI+ + S
Sbjct: 709 RPMSCVEGDVLIFRSPCKLPTDVRKMRAVYHSKL--KHLQDCIVMSADSAMCTASPASLL 766
Query: 836 -GGDLDGDIFFISWDNDLI 853
GGD DGD + WD DL+
Sbjct: 767 AGGDYDGDTATVIWDEDLV 785
>gi|406700852|gb|EKD04014.1| RNA-directed RNA polymerase [Trichosporon asahii var. asahii CBS
8904]
Length = 1087
Score = 53.9 bits (128), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 781 SIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECS---GG 837
S V+G VL+ ++PC P DVR + AVY KL K DCI+ + S GG
Sbjct: 693 SCVEGDVLIFRSPCKLPTDVRKMRAVYHSKL--KHLQDCIVMSADSAMCTASPASLLAGG 750
Query: 838 DLDGDIFFISWDNDLI 853
D DGD + WD DL+
Sbjct: 751 DYDGDTATVIWDEDLV 766
>gi|170083917|ref|XP_001873182.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650734|gb|EDR14974.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 448
Score = 53.1 bits (126), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 40/64 (62%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKA 64
+V+VS + A+DL F E KLG+ +V I+TDR + +S+GIG V+F ++D KA
Sbjct: 119 SVFVSQLAARLTARDLGYFFEDKLGEGTVMDSRIVTDRLSRRSKGIGYVEFRTIDHVEKA 178
Query: 65 QNLS 68
LS
Sbjct: 179 LALS 182
>gi|393247915|gb|EJD55422.1| splicing factor, CC1-like protein [Auricularia delicata TFB-10046
SS5]
Length = 581
Score = 53.1 bits (126), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 41/64 (64%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKA 64
+V+VS + A+DL F E KLG+ +V I+TDR + +S+GIG V+ S+D +KA
Sbjct: 250 SVFVSQLAARLTARDLGYFFEDKLGEGAVRDARIVTDRISRRSKGIGYVELRSIDLVTKA 309
Query: 65 QNLS 68
+LS
Sbjct: 310 LDLS 313
>gi|402217675|gb|EJT97754.1| splicing factor CC1-like protein [Dacryopinax sp. DJM-731 SS1]
Length = 640
Score = 53.1 bits (126), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 42/66 (63%)
Query: 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKS 62
L +V+VS + A+DL F E KLG+ SV + I+TDR + +S+GI V+ +S+D S
Sbjct: 302 LRSVFVSQLAARLTARDLGYFFEEKLGEGSVRDVRIVTDRVSRRSKGIAYVELSSIDMVS 361
Query: 63 KAQNLS 68
+A L+
Sbjct: 362 RAIALT 367
>gi|443921112|gb|ELU40879.1| splicing factor, CC1-like family protein [Rhizoctonia solani AG-1
IA]
Length = 399
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 41/64 (64%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKA 64
+V+VS + A+DL F E KLG+ +V I+TDR + +S+GIG V+F ++D +KA
Sbjct: 66 SVFVSQLAARLTARDLGYFFEDKLGEGAVRDARIVTDRLSRRSKGIGYVEFKNIDLVNKA 125
Query: 65 QNLS 68
LS
Sbjct: 126 IALS 129
>gi|392597983|gb|EIW87305.1| hypothetical protein CONPUDRAFT_87147 [Coniophora puteana
RWD-64-598 SS2]
Length = 1075
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 55/117 (47%), Gaps = 16/117 (13%)
Query: 744 DETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVL 803
D G+L G+++ R + KD R D I+KG VLV +NP P DV+ +
Sbjct: 664 DPYGVLKEGEIYFRSSDG-----FKDPETGARFD----ILKGDVLVLRNPTRLPSDVQKV 714
Query: 804 EAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI-PCETEP 859
AV +LE+ Y D IIFP G R + G GD + WD L+ P + P
Sbjct: 715 RAVTYPELEK--YYDVIIFPTCGARSLASYLGG----GDTVLVVWDKQLVQPFNSTP 765
>gi|401888136|gb|EJT52101.1| hypothetical protein A1Q1_06639 [Trichosporon asahii var. asahii
CBS 2479]
gi|406699204|gb|EKD02415.1| hypothetical protein A1Q2_03307 [Trichosporon asahii var. asahii
CBS 8904]
Length = 612
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 38/64 (59%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKA 64
+V+VS + + + DL LF E KLG +V II DR + +SRGIG V+ S D SKA
Sbjct: 245 SVFVSQLAASLKSSDLGLFFEDKLGPRTVRDARIINDRHSRRSRGIGYVELASTDLVSKA 304
Query: 65 QNLS 68
LS
Sbjct: 305 LALS 308
>gi|409047033|gb|EKM56512.1| hypothetical protein PHACADRAFT_118286 [Phanerochaete carnosa
HHB-10118-sp]
Length = 965
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 783 VKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGD 842
V G VL+ +NP P DV+ + AV + E DY+D II P KG R + +GGD DGD
Sbjct: 576 VVGDVLIYRNPARVPSDVQKVRAV--CRPEYADYLDVIILPTKGRRSLASLLAGGDYDGD 633
Query: 843 IFFISWDNDLI-----PCET-EPP 860
+ +D ++ P T EPP
Sbjct: 634 VATCIFDPQIVGDFRQPVFTAEPP 657
>gi|426201409|gb|EKV51332.1| hypothetical protein AGABI2DRAFT_189584 [Agaricus bisporus var.
bisporus H97]
Length = 563
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 40/64 (62%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKA 64
+V+VS + A+DL F E KLG+ +V I+TDR + +S+GIG V+F +++ KA
Sbjct: 234 SVFVSQLAARLTARDLGYFFEDKLGEGTVMDARIVTDRLSRRSKGIGYVEFRTIELVEKA 293
Query: 65 QNLS 68
LS
Sbjct: 294 IGLS 297
>gi|409083550|gb|EKM83907.1| hypothetical protein AGABI1DRAFT_110515 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 563
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 40/64 (62%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKA 64
+V+VS + A+DL F E KLG+ +V I+TDR + +S+GIG V+F +++ KA
Sbjct: 234 SVFVSQLAARLTARDLGYFFEDKLGEGTVMDARIVTDRLSRRSKGIGYVEFRTIELVEKA 293
Query: 65 QNLS 68
LS
Sbjct: 294 IGLS 297
>gi|402219719|gb|EJT99791.1| hypothetical protein DACRYDRAFT_100977 [Dacryopinax sp. DJM-731
SS1]
Length = 1204
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 74/165 (44%), Gaps = 20/165 (12%)
Query: 513 FNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTS------DGNTYCFSDGIG 566
N+ ++ K A RM L+SSS + ++++M+ D+ S +DG G
Sbjct: 482 LNQKQTSGKWAKRMQLLWSSSVPGPRLEAENIKMVDDIIAPSFRHLPKAPAERDMTDGAG 541
Query: 567 KISLSFARQVAQKCGLSHTPSAFQIRYGGYKGV-----IAVDRNSFRKLSLRRSMLKFES 621
++ + AR + + GL H P A Q R GG KG+ + D + R + R S LK
Sbjct: 542 LMTYAVARDIQARLGLRHPPCAVQYRTGGLKGMWVLRALTSDDDGHRFVWYRPSQLKIRH 601
Query: 622 RN--------RMLNVTKWSE-SMPCFLNREIISLLSTLGVKDEVF 657
R + V S+ S P L +++ LL+ GV +++
Sbjct: 602 SESQLEKNALRTIEVLSPSKLSAPARLTTQLVVLLAENGVPNKLL 646
>gi|353241158|emb|CCA72990.1| related to qde-1 RNA-dependent RNA polymerase (RdRP) [Piriformospora
indica DSM 11827]
Length = 1766
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 87/190 (45%), Gaps = 40/190 (21%)
Query: 513 FNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSF 572
+N+ + +SK A R+ FS + +++ + ++ D+E DG F+DG G ++ S
Sbjct: 945 YNEKQDMSKLATRLELGFSDTLPGVLLEPAHIHVVNDIE-NDDGT--VFTDGAGLMTPSL 1001
Query: 573 ARQVAQKCGLSH--------TPSAFQIRYGGYKGVI------AVDRN--SFRKLSLRRSM 616
AR +A+K TP A+QIR KGV+ VDRN +L L +SM
Sbjct: 1002 ARTLARKYPTKDQRDRDALDTPVAYQIRVQTAKGVVLIDPDMLVDRNFDGPHRLLLSKSM 1061
Query: 617 LKFESRNRML--------NVTKWSESMPCF-------------LNREIISLLSTLGVKDE 655
K N+ L ++ ++ + C L+ + I++LS+ GV D+
Sbjct: 1062 CKAARGNKPLRPGPVNGMHILDAADCIVCIVKPAPVSASTGVRLSSQFITVLSSCGVPDD 1121
Query: 656 VFEAMQQQQL 665
VF +Q L
Sbjct: 1122 VFLQIQHDAL 1131
Score = 46.6 bits (109), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 23/132 (17%)
Query: 729 CRIYVPKGRLLIGCF--DETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSI---- 782
+ ++P R G D TG L G+VF VD +T +
Sbjct: 1286 AKFHLPVERSACGFLQPDFTGSLKEGEVFFSPKSAM-------------VDSETGLAVQF 1332
Query: 783 VKGKVLVTKNPCLHPGDVRVLEAVYEMKLEE-KDYVDCIIFPQKGERPHPNECSGGDLDG 841
++G V+V ++P L P D+R ++AV+ KL++ K + C I GE P + +GGD DG
Sbjct: 1333 IEGDVIVGRHPALLPTDMRKVKAVFVPKLQDFKGILFCSIH---GELPLASILAGGDYDG 1389
Query: 842 DIFFISWDNDLI 853
D I W+ ++
Sbjct: 1390 DEGTIIWEQRIV 1401
>gi|392571432|gb|EIW64604.1| splicing factor CC1-like protein [Trametes versicolor FP-101664
SS1]
Length = 344
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 40/64 (62%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKA 64
+V+VS + A+DL F E KLG+ SV I+TDR + +S+GIG V+F +++ +A
Sbjct: 14 SVFVSQLAARLTARDLGYFFEDKLGEGSVMDSRIVTDRISRRSKGIGYVEFRTVELVDRA 73
Query: 65 QNLS 68
LS
Sbjct: 74 IGLS 77
>gi|409051610|gb|EKM61086.1| hypothetical protein PHACADRAFT_247456 [Phanerochaete carnosa
HHB-10118-sp]
Length = 584
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 40/64 (62%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKA 64
+V+VS + A+DL F E KLG+ +V I+TDR + +S+GIG V+F +++ KA
Sbjct: 255 SVFVSQLAARLTARDLGYFFEDKLGEGAVMDSRIVTDRISRRSKGIGYVEFRTIELVEKA 314
Query: 65 QNLS 68
LS
Sbjct: 315 IGLS 318
>gi|390604396|gb|EIN13787.1| splicing factor CC1-like protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 433
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 40/64 (62%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKA 64
+V+VS + A+DL F E KLG+ +V I+TDR + +S+GIG V+ +++ +A
Sbjct: 104 SVFVSQLAARLTARDLGYFFEDKLGEGTVMDARIVTDRLSRRSKGIGYVELKTIELVDQA 163
Query: 65 QNLS 68
NLS
Sbjct: 164 INLS 167
>gi|353238006|emb|CCA69965.1| related to splicing factor HCC1 [Piriformospora indica DSM 11827]
Length = 543
Score = 51.6 bits (122), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 39/64 (60%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKA 64
+V+V+ + A+DL F E KLG +V I+TDR + +S+GIG V+ SLD SKA
Sbjct: 201 SVFVTQLAARLTARDLGYFFEEKLGDGAVRDARIVTDRLSRRSKGIGYVELRSLDLVSKA 260
Query: 65 QNLS 68
L+
Sbjct: 261 IALT 264
>gi|393224586|gb|EJD32918.1| hypothetical protein AURDEDRAFT_177990 [Auricularia delicata
TFB-10046 SS5]
Length = 655
Score = 51.6 bits (122), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 12/105 (11%)
Query: 744 DETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVL 803
D TG L G+V+ R ++ L+S+ F +++G ++ ++PC+ P D++ +
Sbjct: 231 DPTGTLEPGEVYFRPSVPL--LDSQGYQF--------DVLEGDCVMGRHPCMLPSDLQKV 280
Query: 804 EAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISW 848
AV +L + Y D ++ +G R + +GGD DGD I+W
Sbjct: 281 RAVNRAELGQ--YRDVVVCATRGRRSLASLLAGGDYDGDKVVITW 323
>gi|328855319|gb|EGG04446.1| hypothetical protein MELLADRAFT_117081 [Melampsora larici-populina
98AG31]
Length = 789
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 81/358 (22%), Positives = 140/358 (39%), Gaps = 75/358 (20%)
Query: 560 CFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSFRKLSLRRSMLKF 619
+DG IS A+++ G++ PSAFQ R KGV + +S + +
Sbjct: 342 VMTDGAAAISKFAAQKIKDSLGMNFLPSAFQARIMKAKGVWYL--SSHDSIEEDEESMWI 399
Query: 620 ESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAAL 679
E R+ ++W + + +I F ++ + G +L +R+ +
Sbjct: 400 EIRD-----SQWKADVSYGHDVDI------------PFNLVRSSRHAKTGHVLASRKVPV 442
Query: 680 DV------LQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYV 733
L+ L +S L +++ Y N + + + + LS+ SR +
Sbjct: 443 STFTDLLKLELLTVFNSLTDLNHLMVTSYLDN---HAEVHINTEDVEDLSERLSRRPLDA 499
Query: 734 PKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTS----IVKGKVLV 789
+ D TG L G+VF++++ H VD T+ +++G+ +V
Sbjct: 500 ITS--VYAMPDPTGTLKEGEVFLQLS--------------HFVDQDTALPIQVLRGECIV 543
Query: 790 TKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWD 849
++PC+HP D R + AV L Y D ++ GER + SG GD + WD
Sbjct: 544 ARSPCVHPCDARKVTAVANQNLVR--YDDVLVCSVLGERSLLDYLSG----GDTVTVIWD 597
Query: 850 NDLIPCETEPPMDYTGRRSRIMDHDV-------TLEEIHKFFVDYMINDTLGAISTAH 900
P TEP ++ DV L+E K+F IN + AH
Sbjct: 598 ----PHITEP----------FVNADVGECISQKELKEYEKYFEVSTINSISNSKDNAH 641
>gi|408393216|gb|EKJ72482.1| hypothetical protein FPSE_07363 [Fusarium pseudograminearum CS3096]
Length = 218
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 5/150 (3%)
Query: 417 AKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKH 476
A+++ D + + +E S + A + R ++ + L+ GI + H
Sbjct: 74 AQHSPDILLLFLLESIKSLIVGPASKEQLPAPDLQPRTRQEVSDYSIRCLRAGITVNGVH 133
Query: 477 YEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQT 536
Y F SQL++ S ++ A+ E + + F K+++V K A +G LFSS+K
Sbjct: 134 YNFYGHINSQLKSRSCFLLAATKEEISLQIESLED-FTKMKTVGKKAKCIGLLFSSAKTA 192
Query: 537 LVVPVQDVEMIPDVEVTSDGNTYCFSDGIG 566
+ E IPDVE Y F+ G+
Sbjct: 193 MTTNPDRCEDIPDVETVD----YIFTMGVA 218
>gi|302883308|ref|XP_003040555.1| hypothetical protein NECHADRAFT_106579 [Nectria haematococca mpVI
77-13-4]
gi|256721441|gb|EEU34842.1| hypothetical protein NECHADRAFT_106579 [Nectria haematococca mpVI
77-13-4]
Length = 936
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 787 VLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFI 846
VLV + P P D++ ++AV+ +L + D IIFP G++P + SGG+ DG+ +I
Sbjct: 514 VLVGRCPAHLPSDIQKVKAVFRPEL--RHLKDIIIFPCTGDKPLAQKLSGGNYDGNRAWI 571
Query: 847 SWDNDLI 853
WD D++
Sbjct: 572 CWDPDMV 578
>gi|302413493|ref|XP_003004579.1| RNA-dependent RNA polymerase [Verticillium albo-atrum VaMs.102]
gi|261357155|gb|EEY19583.1| RNA-dependent RNA polymerase [Verticillium albo-atrum VaMs.102]
Length = 139
Score = 50.8 bits (120), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 70/163 (42%), Gaps = 26/163 (15%)
Query: 639 LNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKML 698
LNR++I +L +GV+DE F + Q+++L R A S + L
Sbjct: 3 LNRQMIKILEDMGVRDEWFFSQQKRELE-------RRHAVTAGAWNTGAFCSSKASARHL 55
Query: 699 LQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRV 758
+ L + L LK + RI +P+G L G DE+G L+ G+V V
Sbjct: 56 TSRHSSRRSTMLKELRL---------LKFKARIPMPQGVTLFGIMDESGFLSEGEVSV-- 104
Query: 759 TMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVR 801
D + + +++ G + V ++P L+PGD++
Sbjct: 105 --------CYDSCYNGSLPIDSTLNDGNIPVIRSPALYPGDIQ 139
>gi|238580064|ref|XP_002389180.1| hypothetical protein MPER_11728 [Moniliophthora perniciosa FA553]
gi|215451163|gb|EEB90110.1| hypothetical protein MPER_11728 [Moniliophthora perniciosa FA553]
Length = 317
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 59/109 (54%), Gaps = 22/109 (20%)
Query: 877 LEEIHKFFVDYMINDTLGAISTAHLVHADR----DPDKARSSKCLHLATLHSMAVDFAKT 932
++++ F ++Y+ +D LG +S + AD+ +PD C+ +A LHS+AVD+ K+
Sbjct: 1 MDDVADFVMEYITHDVLGMVSINWRILADQTNIFNPD------CMKMAALHSLAVDYPKS 54
Query: 933 GAPAEMPLALKPK----EFPDFMERE-----DKPRYI-SFGVLGKLYRA 971
G P +P+ PK + PD+ E D +Y S +GKL+RA
Sbjct: 55 GNP--VPIQDIPKRSNEKLPDWYAPETMYTLDTSKYYPSQKAIGKLFRA 101
>gi|390604892|gb|EIN14283.1| hypothetical protein PUNSTDRAFT_49107 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 166
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 52/94 (55%), Gaps = 11/94 (11%)
Query: 744 DETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVL 803
D G+LN G+++ T + E +++ H +KG+VL+ +NPC P DV+ +
Sbjct: 45 DPLGVLNPGEIYFSSTKPLRD-EVTLENYNH--------IKGEVLIYRNPCRLPSDVQKV 95
Query: 804 EAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGG 837
AVY +LE + D I++ KG++ P+ +GG
Sbjct: 96 NAVYRSELES--WQDIILYSTKGDQSLPSWLAGG 127
>gi|383127813|gb|AFG44556.1| Pinus taeda anonymous locus 0_3851_01 genomic sequence
gi|383127815|gb|AFG44557.1| Pinus taeda anonymous locus 0_3851_01 genomic sequence
gi|383127817|gb|AFG44558.1| Pinus taeda anonymous locus 0_3851_01 genomic sequence
gi|383127819|gb|AFG44559.1| Pinus taeda anonymous locus 0_3851_01 genomic sequence
gi|383127821|gb|AFG44560.1| Pinus taeda anonymous locus 0_3851_01 genomic sequence
gi|383127823|gb|AFG44561.1| Pinus taeda anonymous locus 0_3851_01 genomic sequence
gi|383127825|gb|AFG44562.1| Pinus taeda anonymous locus 0_3851_01 genomic sequence
Length = 114
Score = 49.3 bits (116), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 19/88 (21%)
Query: 1056 GDMKDRILLSAKNLQNEAKEWF-GSSCKENEHPQL-------ASAWYHVTYSPSYCKERM 1107
G++K+R+ + K L+ E + F G+ EN P+ ASAWYHV Y P++ ++ M
Sbjct: 1 GEIKERLQHAYKALRKEFRLVFEGTKDSENPEPRKQSDYEAKASAWYHVAYHPTWVQKTM 60
Query: 1108 -----------ALLSFPWIVGDILLNIK 1124
LLSFPWI D L IK
Sbjct: 61 ELIEPNGYHSAPLLSFPWISVDYLAQIK 88
>gi|413954937|gb|AFW87586.1| hypothetical protein ZEAMMB73_608283 [Zea mays]
Length = 577
Score = 49.3 bits (116), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 104/274 (37%), Gaps = 32/274 (11%)
Query: 162 CC-FKVEILFEDVLETVGFSLDEGATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHI 220
CC K+E V E + F D+ ++ +L P +Y + SG V + P + +
Sbjct: 311 CCDVKLEFALAHVAEALAFQADDS-----LVLRLSAAPLVYYRTSGDDVHGRVP---FQL 362
Query: 221 CKEDFDFFWVRTTDFSVTKSIGCSTSF-------FWEIKNGLLASDISNIFPFYKEDKTD 273
D D W+RTTD + + +IG ++ FW L P + D+
Sbjct: 363 VDADDDP-WIRTTDVTRSGAIGRCLAYRVSFAVQFWPTMRVALECMQRQGVPVHVRDRRC 421
Query: 274 ---LILEEGE--EFCTTSEIVPLVKCRPGFNLSHEVLFQLNSLVHNQKVSLVAADAELIQ 328
+LEE + + P G L VL+ +N L+HN V+ E
Sbjct: 422 RGFTVLEEAGLVQPMRDAFFSPRHDDDAGAGLRFPVLYLVNVLMHNGVVNPHQMTPEFFG 481
Query: 329 ILSGLSMETALMVLQKLHKLK-SICYDPVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVM 387
+L + + L +L K +C +P +K +N + S ++ D +
Sbjct: 482 LLMRTREDVNVAALTELFGAKLGVCDNPCWRLKNAQDRAAKNLDLVCRSRRRKASDCDA- 540
Query: 388 SCYRALVTPMKIYCLGPELETSNYVVKNFAKYAS 421
R +VT P L+ N V + A AS
Sbjct: 541 EVRRLIVT--------PSLQPGNTVCRWSAPTAS 566
>gi|392575871|gb|EIW69003.1| hypothetical protein TREMEDRAFT_73994 [Tremella mesenterica DSM 1558]
Length = 1405
Score = 48.9 bits (115), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 779 KTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGE--RPHPNECSG 836
+ S ++G VL ++PC P D+R AVY +L DCI+ + + R + G
Sbjct: 957 RISYLEGPVLALRSPCKLPSDIRKFTAVYRPELVH--LTDCIVMSARDDCRRSPASFLGG 1014
Query: 837 GDLDGDIFFISWDNDLI 853
GD DGD I WD +++
Sbjct: 1015 GDYDGDTVQIIWDPEIV 1031
>gi|392574247|gb|EIW67384.1| hypothetical protein TREMEDRAFT_33681 [Tremella mesenterica DSM
1558]
Length = 619
Score = 48.9 bits (115), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 39/64 (60%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKA 64
+V+VS I + DL LF E KLG+ +V ++TDR + +S+GIG V+ ++ ++A
Sbjct: 247 SVFVSQISSRMTSSDLGLFFEDKLGRGAVRDARVVTDRGSKRSKGIGYVELDAVALVNRA 306
Query: 65 QNLS 68
LS
Sbjct: 307 LALS 310
>gi|225382110|gb|ACN89267.1| putative RNA-dependent RNA polymerase 2 [Thalassiosira pseudonana]
Length = 1039
Score = 48.5 bits (114), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 50/238 (21%), Positives = 91/238 (38%), Gaps = 53/238 (22%)
Query: 622 RNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDV 681
R ML V K + SMP + I+S+++ M Q ++GK+L +++
Sbjct: 580 RESMLKVGKSANSMPKHRDGFILSIVNL----------MPSSQGYVVGKILFDKDPTKSD 629
Query: 682 LQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIG 741
KL P + + + +N L + + +IG
Sbjct: 630 KGKLK----------------PPASDAWRLLFDKGVRQNTLKQYVEDYKFGGIRHASVIG 673
Query: 742 CFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVR 801
D TG + G V++ R + K+ +T++PC R
Sbjct: 674 LIDPTGSIPNGMVYIPGMGKR--------------------LPSKIFITRSPCTEVSHGR 713
Query: 802 VLEAVYEMKLEEKDYVD------CIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI 853
V+E E+ + + + ++F + E P P + + GDLDGD +FI WD+ ++
Sbjct: 714 VVEVAKELPPDAFQFFNREYSFGSVVFALE-ENPLPMKLADGDLDGDWYFICWDDKIL 770
>gi|426200996|gb|EKV50919.1| RNA-dependent RNA polymerase [Agaricus bisporus var. bisporus H97]
Length = 1000
Score = 47.8 bits (112), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 61/117 (52%), Gaps = 12/117 (10%)
Query: 744 DETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVL 803
D GIL+ G+++ R + + L+ + Q + IV G V++ + P D++ +
Sbjct: 599 DPLGILDEGEIYFRSSESL--LDPRTQLTY-------DIVTGDVILGRYPVRLASDLQKV 649
Query: 804 EAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI-PCETEP 859
+AV + +L + D II KG+R + SGGD+DGD F+ + D++ P +P
Sbjct: 650 KAVNKPELYR--WPDVIIVSTKGKRSLASLLSGGDMDGDTLFMLREPDIVEPFRNQP 704
>gi|242053115|ref|XP_002455703.1| hypothetical protein SORBIDRAFT_03g022063 [Sorghum bicolor]
gi|241927678|gb|EES00823.1| hypothetical protein SORBIDRAFT_03g022063 [Sorghum bicolor]
Length = 70
Score = 47.8 bits (112), Expect = 0.034, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Query: 983 AIWSEKIAEA---------SYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTE 1033
A+W EK EA +D ++EV F+ L E Y E + LM YY E
Sbjct: 3 ALWHEKNTEALLPVSPPSSVFDPNVEVVSFDKHLDTTEEQYRAYVERLGTLMTYYSTKRE 62
Query: 1034 DEILTGNL 1041
DEILTGN+
Sbjct: 63 DEILTGNI 70
>gi|353241842|emb|CCA73629.1| hypothetical protein PIIN_07582 [Piriformospora indica DSM 11827]
Length = 1021
Score = 47.4 bits (111), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 783 VKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGD 842
KG+VL+ ++P L P D++ + L++K + II +G RP + SGGD DGD
Sbjct: 629 TKGEVLIGRHPALLPTDIQKVRLANITSLKQKRGL--IICSTQGSRPLADLLSGGDYDGD 686
Query: 843 IFFISWDNDLI 853
I WD +++
Sbjct: 687 EAIIIWDRNVV 697
>gi|403159921|ref|XP_003890550.1| hypothetical protein PGTG_20838 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375169335|gb|EHS63855.1| hypothetical protein PGTG_20838 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 1158
Score = 47.0 bits (110), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 90/422 (21%), Positives = 164/422 (38%), Gaps = 89/422 (21%)
Query: 556 GNTYCFSDGIGKISLSFARQVAQKCGLSHT--PSAFQIRYGGYKGVIAVD-----RNSFR 608
G + +DG G IS + A +V + G + PSA+Q R G KG+ V N
Sbjct: 385 GKSEIMTDGAGIISRAAATRVCESLGRKYDTLPSAYQARIGFSKGLWVVPPEYSAHNITP 444
Query: 609 KLSLRRSMLK---FESRNRMLNVTKWSESM-PCFLNREIISLLSTLGVKDE-VFEAMQQ- 662
+ +R S K E N+ + S S+ L ++++ +LS GV+++ V A+++
Sbjct: 445 WIEIRDSQWKAEPIEGYTFHFNLCRISRSVTSSSLGKQLLPVLSARGVQNKTVCSALEEH 504
Query: 663 -----------------QQLILLGKMLINREAALDVLQKL-----------NGVDSKNI- 693
+ L G + R A LD + + N + NI
Sbjct: 505 ITSTISDLNSADPLRLAEVLSRSGGLKQTRRAILDRISNVQHNPTAYRTYGNDPVAPNID 564
Query: 694 ---------------------------LVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLK 726
++ ML G+EP Y+ L E+++S+
Sbjct: 565 PEYGESWAFTTDGLHAMSLVPFHAEEQVISMLAAGFEPRNR-YIVTKLRKIKEDKISN-A 622
Query: 727 SRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGK 786
+ R+ + + L D TG L + F++ + + ++ K S +
Sbjct: 623 IKFRVPIAQSTYLYVMPDPTGTLKEDEAFLQFSSFED----------YQTGIKLSNLVCP 672
Query: 787 VLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFI 846
+V+++PC+ D R + V L + Y D ++ +G+ + SGGD DGD +
Sbjct: 673 AIVSRSPCVASIDARKINLVDNDILRDV-YYDVLVCSIQGKTSLLSLLSGGDYDGDQVMV 731
Query: 847 SWDNDLIPCETEPPMDYTGRRSRIMDHD----VTLEEIHKFFVDYMINDTLGAISTAHLV 902
WD L+ +D + RI+ + V L + + ++ N+ + TA L+
Sbjct: 732 IWDPVLVQQFHNVDLD---KHPRIVTDELFEPVQLGTVEECLLEAYENNPEEFVKTAQLI 788
Query: 903 HA 904
A
Sbjct: 789 QA 790
>gi|361124327|gb|EHK96429.1| putative RNA-dependent RNA polymerase 1 [Glarea lozoyensis 74030]
Length = 900
Score = 47.0 bits (110), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 55/105 (52%), Gaps = 4/105 (3%)
Query: 751 YGQVFVRVTMTREELESKDQSFFHRVDDKTSIV--KGKVLVTKNPCLHPGDVRVLEAVYE 808
Y ++F R ++ +E+ SF V ++ ++ + VLV ++P D++ ++AV
Sbjct: 448 YLKLFSRTSLEPDEVYMDFSSFVDDVSGQSGVLLHRQDVLVARSPAHFVSDIQKVKAV-- 505
Query: 809 MKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI 853
K+E D I+F KG + SGGD DGD+ ++ W+ ++
Sbjct: 506 AKVELIGLKDVIVFSTKGNPSLAAKLSGGDYDGDLAWLCWEPSIV 550
>gi|313237377|emb|CBY12568.1| unnamed protein product [Oikopleura dioica]
Length = 316
Score = 47.0 bits (110), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 15/123 (12%)
Query: 509 WMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKI 568
+ G F KI++V K AAR+G L S+++ ++D + + ++ G F+DG G++
Sbjct: 29 YFGDFEKIKTVPKYAARLGLLISATRHAEF--IEDGKWQLEKDIVHHGCN--FTDGCGRM 84
Query: 569 SLSFARQVA--QKCGLSH------TPSAFQIRYGGYKGVIAVDRN---SFRKLSLRRSML 617
S A++ + C + PS QIR+ G KG++ D + S + + LR S
Sbjct: 85 STQLAQRFTLNKHCANRYKHQSFEVPSIVQIRFMGCKGILVHDPSLDFSGKDVILRESQK 144
Query: 618 KFE 620
KFE
Sbjct: 145 KFE 147
>gi|58267808|ref|XP_571060.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|134112313|ref|XP_775132.1| hypothetical protein CNBE4060 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257784|gb|EAL20485.1| hypothetical protein CNBE4060 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57227294|gb|AAW43753.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 615
Score = 46.2 bits (108), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 39/64 (60%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKA 64
+++VS + ++ L LF E KLG+ +V ++TD+ +S+GIG V+ S+D +KA
Sbjct: 243 SIFVSQLSARMTSQVLGLFFEDKLGRGAVRDARVVTDKVARRSKGIGYVELDSVDLVNKA 302
Query: 65 QNLS 68
LS
Sbjct: 303 LALS 306
>gi|224008402|ref|XP_002293160.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220971286|gb|EED89621.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 869
Score = 46.2 bits (108), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 53/115 (46%), Gaps = 21/115 (18%)
Query: 739 LIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPG 798
L+G D TG + YG VF+ E + F R ++ V V+++PCL P
Sbjct: 593 LVGVADPTGKIPYGTVFIPGYTKNAE---GSRELFSRSLNE-------VFVSRSPCLTPD 642
Query: 799 DVRVLEAV-YEMKLEEKDYVD--------CIIF--PQKGERPHPNECSGGDLDGD 842
D ++L V + KD+ D IIF P+ + P PN + GDLDGD
Sbjct: 643 DAKLLSVVGSQPDGMRKDHWDMLCSYRFGTIIFGTPENNQTPMPNLIADGDLDGD 697
>gi|321259451|ref|XP_003194446.1| hypothetical protein CGB_E5340C [Cryptococcus gattii WM276]
gi|317460917|gb|ADV22659.1| conserved hypothetical protein [Cryptococcus gattii WM276]
Length = 615
Score = 46.2 bits (108), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 39/64 (60%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKA 64
+++VS + ++ L LF E KLG+ +V ++TD+ +S+GIG V+ S+D +KA
Sbjct: 243 SIFVSQLSARMTSQVLGLFFEDKLGRGAVRDARVVTDKVARRSKGIGYVELDSVDLVNKA 302
Query: 65 QNLS 68
LS
Sbjct: 303 LALS 306
>gi|154285562|ref|XP_001543576.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150407217|gb|EDN02758.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1055
Score = 46.2 bits (108), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 16/149 (10%)
Query: 703 EPNVEPYLSMMLLSHH--ENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTM 760
+P EP L+ ++ ++ L +LK + +I V + D G+L +V +
Sbjct: 545 KPMDEPQLTFEVVQWRLLQDYLDNLK-KLKITVSQSTFAYCVADPFGVLRPDEV--HLGF 601
Query: 761 TREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCI 820
+RE + H +D VL+ + P D++ ++VY+ +L + D I
Sbjct: 602 SREWEHGSAGTELHDID---------VLLARLPAHLATDIQKRKSVYKNEL--RHMKDVI 650
Query: 821 IFPQKGERPHPNECSGGDLDGDIFFISWD 849
+FP G+ P + SGGD DGD ++ WD
Sbjct: 651 VFPTTGDTPLASLLSGGDYDGDQCWVCWD 679
>gi|113205191|gb|AAT39934.2| RNA-directed RNA polymerase-like, identical [Solanum demissum]
Length = 190
Score = 46.2 bits (108), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 56/120 (46%), Gaps = 6/120 (5%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKA 64
T+ V P A+ + LFLE G ++ ALE+ +S SR +VQF K
Sbjct: 4 TIQVFGFPNLLSAEVVKLFLEKHTGYGTICALEV--KQSKGGSRAFAKVQFVDNISADKI 61
Query: 65 QNLSLNDKLVFNSQNLKISETHSDIVPRPVKAQHRVEDGV-LHVGVMCKEERLRVLQTFE 123
NL+ + +L F S LK E +DIV H DG+ L+ G E++ VL + E
Sbjct: 62 INLA-SKRLYFGSSYLKAWEMKTDIVQLRAYVDHM--DGITLNFGCQISEDKFAVLGSTE 118
>gi|297848118|ref|XP_002891940.1| hypothetical protein ARALYDRAFT_892768 [Arabidopsis lyrata subsp.
lyrata]
gi|297337782|gb|EFH68199.1| hypothetical protein ARALYDRAFT_892768 [Arabidopsis lyrata subsp.
lyrata]
Length = 117
Score = 45.8 bits (107), Expect = 0.13, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 3/118 (2%)
Query: 286 SEIVPLVKCRPGFNLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKL 345
+++VP+V GF+L E+LF++N+LV N V A + ++++ L KL
Sbjct: 3 NKLVPVVDPPSGFDLPFEILFKVNALVQNACVPGPALVPKFYELVATHERNFIDEALAKL 62
Query: 346 HKLKSICYDPVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLG 403
L CY S++K + G+ K+ P S K ++ V+ ++ VTP ++Y G
Sbjct: 63 RCLNECCYTLASWLKQEYTDWGK--KTQPPRS-KESLEGVVVYIHQVKVTPTRVYFCG 117
>gi|451994086|gb|EMD86557.1| hypothetical protein COCHEDRAFT_1034369 [Cochliobolus
heterostrophus C5]
Length = 110
Score = 45.4 bits (106), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 694 LVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGIL--NY 751
+ M+L + + EP++ +L + +LK + RI + G L+GC DET L ++
Sbjct: 1 MAAMVLDDFMGSREPFIMSLLALWRACTIKNLKEKARIAIDNGAFLLGCVDETKKLKEHF 60
Query: 752 GQVFVRVTMTREELESKDQSFFHRVDDKTS-----IVKGKVLVTKNPCLH 796
R TR+ + F +V + S I++G +V +NP LH
Sbjct: 61 NDPRSRRDATRDGKLATLPEIFLQVSNPNSKGHYIIIEGICIVARNPSLH 110
>gi|403415588|emb|CCM02288.1| predicted protein [Fibroporia radiculosa]
Length = 1313
Score = 45.1 bits (105), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 80/181 (44%), Gaps = 35/181 (19%)
Query: 783 VKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGE--------RPHPNEC 834
+ G+V+VT++PC P D++ L +V+ +L +VD I+ KG R +
Sbjct: 889 ILGEVIVTRHPCKTPTDMQKLVSVFNNRLIR--FVDVIVVSVKGHLFNNEFLPRHLASMT 946
Query: 835 SGGDLDGDIFFISWDNDLIP--------CETEPP-------------MDYTGRRSRIMDH 873
GGD DGD + WD LI EPP ++ R + + +
Sbjct: 947 GGGDYDGDTVEVYWDPRLIENFRNANPNFAKEPPEVQASLVKNSETVAEFLERTASLRNG 1006
Query: 874 DVTLEEIHKFFVDYMINDT-LGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKT 932
++ L E KF + ++N + +G ST ++ +++ + LA + S +D KT
Sbjct: 1007 EL-LHEYQKFLLGSLLNTSRVGTYSTWWEASIYKNGYSHKTT--IFLAYMFSAILDGPKT 1063
Query: 933 G 933
G
Sbjct: 1064 G 1064
>gi|328850109|gb|EGF99278.1| hypothetical protein MELLADRAFT_79506 [Melampsora larici-populina
98AG31]
Length = 1048
Score = 44.3 bits (103), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 779 KTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGD 838
+ I+ L+ ++PC P D++ + V +L+ + Y D ++ +G R + SGGD
Sbjct: 557 RHGILARHALIWRSPCAAPIDIQKVRLVANEQLQ-RLYFDVLVCSTRGGRAVLSLLSGGD 615
Query: 839 LDGDIFFISWDNDLI-PCETEPPMDY 863
DGD ++WD L+ P + P Y
Sbjct: 616 YDGDQVAVTWDKRLVDPFQNADPDAY 641
>gi|336365378|gb|EGN93729.1| hypothetical protein SERLA73DRAFT_163465 [Serpula lacrymans var.
lacrymans S7.3]
Length = 1089
Score = 44.3 bits (103), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 11/95 (11%)
Query: 744 DETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVL 803
D G+L G++ R + + + Q V+G+VLVT+NP P D++ +
Sbjct: 731 DPFGVLKEGEIHFRSSESLTNPATGAQ---------FDTVRGEVLVTRNPTRLPSDIQKV 781
Query: 804 EAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGD 838
AV KL+ +Y I+F KG+R + GGD
Sbjct: 782 TAVSHPKLD--NYYGVIVFSTKGDRSLASWLGGGD 814
>gi|449668207|ref|XP_002154892.2| PREDICTED: uncharacterized protein LOC100214913 [Hydra
magnipapillata]
Length = 712
Score = 43.5 bits (101), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 6/126 (4%)
Query: 998 LEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTG-NLRNRASYLQRDNRRYG 1056
L + G+ +L A Y + A+M+++ E +++ G N +++ + D G
Sbjct: 520 LRIPGYYEYLEDALEVYSCYAHNIKAIMSWFDLKVEADVVLGCATYNWSTHFEADK---G 576
Query: 1057 DMKDRILLSAKNLQNEAKEWFGSSCKENEHPQLASAWYHVTYSPSY--CKERMALLSFPW 1114
I K L + +E F S+ + + A AWY++ Y + + LSFPW
Sbjct: 577 KASKSIAECYKQLVKKFREIFFSNIDDVSKMKKACAWYNLVYDNAIKIVGHKKKYLSFPW 636
Query: 1115 IVGDIL 1120
++ D+L
Sbjct: 637 VISDVL 642
>gi|409052182|gb|EKM61658.1| hypothetical protein PHACADRAFT_135496 [Phanerochaete carnosa
HHB-10118-sp]
Length = 913
Score = 43.5 bits (101), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 785 GKVLVTKNPCLHPGDVRVLEAV--YEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGD 842
G L+ +NP DVR + AV E+ L Y D I+ P KG P+ +GGD+DGD
Sbjct: 513 GDCLLYRNPARLASDVRKVRAVDVPELVL----YKDVIVVPCKGPVSLPSMLAGGDVDGD 568
Query: 843 IFFISWDNDLI 853
WD L+
Sbjct: 569 TAVCIWDPALV 579
>gi|390599418|gb|EIN08814.1| hypothetical protein PUNSTDRAFT_44349 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 1065
Score = 43.5 bits (101), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 25/126 (19%)
Query: 728 RCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKV 787
R +I +P D TG L+ G++F+R S + KT + G+V
Sbjct: 691 RFKIELPMSCTAFITPDPTGTLDPGEIFIR---------SSHDNVIGLDGIKTDTIIGEV 741
Query: 788 LVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFIS 847
LV +AVY L Y + I+ KG+R + +GGD DGD F++
Sbjct: 742 LV--------------KAVYRPALHR--YTNQIVISVKGDRSLASILAGGDYDGDKCFVT 785
Query: 848 WDNDLI 853
WD ++
Sbjct: 786 WDPAIV 791
>gi|290994090|ref|XP_002679665.1| predicted protein [Naegleria gruberi]
gi|284093283|gb|EFC46921.1| predicted protein [Naegleria gruberi]
Length = 1014
Score = 43.1 bits (100), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 102/428 (23%), Positives = 177/428 (41%), Gaps = 64/428 (14%)
Query: 467 QDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGC-FNK---IRSVSKC 522
++GI Y+F + S S ++ +S +F ++ ++ E V+ +G F+K V K
Sbjct: 262 ENGISYEGHCYKFFSTSNSGMKGSSA-VFINSTLLNLETVKLLVGSSFDKALQTGGVRKV 320
Query: 523 AARMGQLFSSSKQTLVVPVQD-----VEMIPDVEVTSDGNTYCFSDGIGKI-SLSFARQV 576
A+R+G +S Q+L D + I D +DG+ SD +I ++A
Sbjct: 321 ASRIGLSIGTSIQSLATFEFDQIFCLPQNIEDEFPITDGSGLARSDFFEEILEKTYAIPY 380
Query: 577 AQKCGLSHTP---------------SAFQIRYGGYKGVIAVDRNSF-------------R 608
+ L+ P SA Q+R G KGV+ +S
Sbjct: 381 FEMEKLAKHPEMKLSRRLETDYKNVSAIQVRMLGAKGVLQKIPDSLWKVLQVKWKFPDST 440
Query: 609 KLSLRRSMLKFESR-NRMLNVTKWSESMPCFLNREIIS-LLSTLGVKDEVFEAMQQQQLI 666
K+ LR SM+KFE+ + ++V +S + ++R ++S LL ++E+ E
Sbjct: 441 KVILRNSMIKFETAYYKKIDVLSYSSATGGSISRGVMSCLLERTDHREEMEEIFMNDLDD 500
Query: 667 LLGKMLINREAALDVLQK-LNGV-DSKNILVKMLLQGYEP----NVEPYLSMMLLSHHEN 720
L +M NR + V L G ++K L K L+ P ++ + + + H
Sbjct: 501 YLKEMEDNRNDPIYVCNYLLTGTGNTKEGLAKQLIMADHPLNNYFIDSVIRENIKTRHLG 560
Query: 721 QLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKT 780
++D S +I +G DE+G L G++ + + ++ +D
Sbjct: 561 LVNDNLS-FKINSHYCVSALGGVDESGELKEGEIHINCDAF------TNSPYYLELD--- 610
Query: 781 SIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLE-EKDYVDCIIFP-QKGERPHPNECSGGD 838
VLV +NP + GD++ L+ + E K + I F KG R GGD
Sbjct: 611 -----YVLVYRNPLGYEGDIQKLKIKKNPQSEFLKSRRNSITFAMSKGTRNPIGFMQGGD 665
Query: 839 LDGDIFFI 846
DGD + I
Sbjct: 666 FDGDRYNI 673
>gi|71003261|ref|XP_756311.1| hypothetical protein UM00164.1 [Ustilago maydis 521]
gi|46096316|gb|EAK81549.1| hypothetical protein UM00164.1 [Ustilago maydis 521]
Length = 640
Score = 42.4 bits (98), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKA 64
+V+ S + +DL F E LG+ +V + I+ DR +S+G+G V+F + + KA
Sbjct: 248 SVFCSQLSARLGQRDLGEFFEDHLGEGAVQDVRIVMDRVTHRSKGVGYVEFAARELVPKA 307
Query: 65 QNLSLNDKLVFN 76
+ L K+VF
Sbjct: 308 --IELTGKIVFG 317
>gi|298375405|ref|ZP_06985362.1| carbohydrate kinase [Bacteroides sp. 3_1_19]
gi|298267905|gb|EFI09561.1| carbohydrate kinase [Bacteroides sp. 3_1_19]
Length = 494
Score = 42.0 bits (97), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 59/150 (39%), Gaps = 12/150 (8%)
Query: 216 DRYHICKEDFDFFWVRTTDFSVTKSIGCSTSFFWEIKNGLLASDISNIFPFYKEDKTDLI 275
DR H DF +R T VT G S FW+ KN L+ D+ N + F K DLI
Sbjct: 152 DRIHKIMLPGDFIAMRLTGDIVTTVSGLSEGIFWDFKNNALSEDLMNYYGFSK----DLI 207
Query: 276 LEEGEEFCTTSEIVPLVKCRPGFNLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSM 335
+ F E+ V G V ++ +N +SL + I G S
Sbjct: 208 ADIRPTFGLQGEVTASVAAELGLKKGTPVTYRAGDQPNNA-LSLNVLNPGEIAATGGTS- 265
Query: 336 ETALMVLQKLHKLKSICYDPVSFVKTQLHV 365
V+ ++ + YD +S V T HV
Sbjct: 266 ----GVVYGVN--GKVNYDTLSRVNTFAHV 289
>gi|301310567|ref|ZP_07216506.1| putative carbohydrate kinase [Bacteroides sp. 20_3]
gi|423336818|ref|ZP_17314565.1| hypothetical protein HMPREF1059_00517 [Parabacteroides distasonis
CL09T03C24]
gi|300832141|gb|EFK62772.1| putative carbohydrate kinase [Bacteroides sp. 20_3]
gi|409240335|gb|EKN33115.1| hypothetical protein HMPREF1059_00517 [Parabacteroides distasonis
CL09T03C24]
Length = 494
Score = 42.0 bits (97), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 59/150 (39%), Gaps = 12/150 (8%)
Query: 216 DRYHICKEDFDFFWVRTTDFSVTKSIGCSTSFFWEIKNGLLASDISNIFPFYKEDKTDLI 275
DR H DF +R T VT G S FW+ KN L+ D+ N + F K DLI
Sbjct: 152 DRIHKIMLPGDFIAMRLTGDIVTTVSGLSEGIFWDFKNNALSEDLMNYYGFSK----DLI 207
Query: 276 LEEGEEFCTTSEIVPLVKCRPGFNLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSM 335
+ F E+ V G V ++ +N +SL + I G S
Sbjct: 208 ADIRPTFGLQGEVTASVAAELGLKKGTPVTYRAGDQPNNA-LSLNVLNPGEIAATGGTS- 265
Query: 336 ETALMVLQKLHKLKSICYDPVSFVKTQLHV 365
V+ ++ + YD +S V T HV
Sbjct: 266 ----GVVYGVN--GKVNYDTLSRVNTFAHV 289
>gi|224144332|ref|XP_002336131.1| hypothetical protein POPTRDRAFT_584507 [Populus trichocarpa]
gi|222873590|gb|EEF10721.1| hypothetical protein POPTRDRAFT_584507 [Populus trichocarpa]
Length = 211
Score = 42.0 bits (97), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 76/192 (39%), Gaps = 44/192 (22%)
Query: 931 KTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIA 990
K G E+P ALK + FP FME+ +K Y S +LGK+Y D +
Sbjct: 38 KGGRKIEVPEALKAELFPHFMEKHEKKTYRSTSILGKIY----DKV-------------- 79
Query: 991 EASYDHDLEVDGFEAFLGVAESHKEMYEEEM-NALMNYYGASTEDEILTGNLRNRASYLQ 1049
+A D DL + E+ L + Y EM NAL G +N +
Sbjct: 80 KAYEDMDLSSNVHESCLVKWKGLYGQYRTEMRNALQ------------AGKEKNNEA--- 124
Query: 1050 RDNRRYGDMKDRILLSAKNLQNEAKEWFGSSCKENEHPQLASAWYHVTYSPSYCKERMAL 1109
+ ++ K + EA E+ S ++ E + A A Y VTY+ + + +
Sbjct: 125 ----------NEVIKKYKEILYEAAEFNLSRRRDEEIFEEARALYQVTYNHAKRQGAVGK 174
Query: 1110 LSFPWIVGDILL 1121
F W V + L
Sbjct: 175 CGFAWRVAGLAL 186
>gi|224001686|ref|XP_002290515.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220973937|gb|EED92267.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|225382108|gb|ACN89266.1| putative RNA-dependent RNA polymerase 1 [Thalassiosira pseudonana]
Length = 885
Score = 41.6 bits (96), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 11/79 (13%)
Query: 786 KVLVTKNPCLHPGDVRVLEAV----YEMKLEEKDYVDCIIF-------PQKGERPHPNEC 834
++ V+++P D RV+E V + M D++ + F P+KG P P
Sbjct: 682 QIFVSRSPATEVSDGRVVELVNTKPFNMSQANWDWLGSLPFGAIMFGNPEKGYCPLPECI 741
Query: 835 SGGDLDGDIFFISWDNDLI 853
+ GDLDGD +F+ W L+
Sbjct: 742 ANGDLDGDWYFVFWSEALL 760
>gi|449551106|gb|EMD42070.1| hypothetical protein CERSUDRAFT_90674 [Ceriporiopsis subvermispora
B]
Length = 623
Score = 41.6 bits (96), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 17/81 (20%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRG--------------- 49
+V+VS + A+DL F E KLG+ SV I+TDR + +S+G
Sbjct: 276 SVFVSQLAARLTARDLGYFFEDKLGEGSVMDSRIVTDRISRRSKGLLLIISRINTSLTFC 335
Query: 50 --IGRVQFTSLDFKSKAQNLS 68
IG V+F +++ KA LS
Sbjct: 336 LRIGYVEFRTVELVDKAIALS 356
>gi|168044162|ref|XP_001774551.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674106|gb|EDQ60619.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 235
Score = 41.2 bits (95), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%)
Query: 6 VWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQ 65
V + IP++ A++L+ LE +GK +V ++I TD +S+G G V F + +A
Sbjct: 60 VHIGKIPRSITARELVDVLERAVGKGTVTVVDIKTDHRTCESKGFGFVTFNTEKAAERAA 119
Query: 66 NLSLNDKLVFNSQNLK 81
L N LV + L+
Sbjct: 120 LLGENGHLVLLNSRLQ 135
>gi|225405447|ref|ZP_03760636.1| hypothetical protein CLOSTASPAR_04667 [Clostridium asparagiforme
DSM 15981]
gi|225043039|gb|EEG53285.1| hypothetical protein CLOSTASPAR_04667 [Clostridium asparagiforme
DSM 15981]
Length = 878
Score = 41.2 bits (95), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 74/187 (39%), Gaps = 31/187 (16%)
Query: 785 GKVLVTKNPCLHPGDVRVLEAVYEMKLEE-----KDYVDCIIF-------PQKGERPHPN 832
G +L ++P + P +V + V L + KD D ++F PQ+G
Sbjct: 489 GDILSFRSPLVDPSEVNRIRIVRNDLLRKWFGHFKD-QDVVMFNLHDISAPQQG------ 541
Query: 833 ECSGGDLDGDIFFISWDNDLIPCETEPPM-----DYTGRRSRIMDHDVTLEEIHKFFVDY 887
G D DGDIFF+ D ++ + E P+ D +SR + L E D
Sbjct: 542 ---GADFDGDIFFLCDDPVIVASKIEKPVILDIEDKQTAQSRAYTAE-NLVEYEVMTRDN 597
Query: 888 MIND-TLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKP-- 944
I + T A S + D D K S C L +DF KTG M L+
Sbjct: 598 RIGEITNVATSIENRYTTDEDLKKRYSDYCSLLRIFQGKEIDFLKTGFRWHMNRGLQKHL 657
Query: 945 KEFPDFM 951
K+ P F+
Sbjct: 658 KQLPYFL 664
>gi|170084677|ref|XP_001873562.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164651114|gb|EDR15354.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 1268
Score = 40.8 bits (94), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 15/112 (13%)
Query: 744 DETGILNYGQVFVR--VTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVR 801
D TG+L GQ++ R V MT + E +F +++G+V++ + P P D++
Sbjct: 845 DPTGLLEEGQIYYRSSVPMTDPDTE---MDYF--------VLQGEVVLGRYPIRLPSDMQ 893
Query: 802 VLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI 853
+ AV +L ++ D II KG+ + SGGD DGD + D ++
Sbjct: 894 KVTAVDIPEL--FNWPDVIIVSTKGKFSLASLLSGGDQDGDELLVIKDKLIV 943
>gi|256839680|ref|ZP_05545189.1| xylulokinase [Parabacteroides sp. D13]
gi|256738610|gb|EEU51935.1| xylulokinase [Parabacteroides sp. D13]
Length = 492
Score = 40.4 bits (93), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 59/150 (39%), Gaps = 12/150 (8%)
Query: 216 DRYHICKEDFDFFWVRTTDFSVTKSIGCSTSFFWEIKNGLLASDISNIFPFYKEDKTDLI 275
DR H DF +R T VT G S FW+ KN L+ ++ N + F K DLI
Sbjct: 150 DRIHKIMLPGDFIAMRLTGDIVTTVSGLSEGIFWDFKNNALSEELMNYYGFSK----DLI 205
Query: 276 LEEGEEFCTTSEIVPLVKCRPGFNLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSM 335
+ F E+ V G V ++ +N +SL + I G S
Sbjct: 206 ADIRPTFGLQGEVTASVAAELGLKKGTPVTYRAGDQPNNA-LSLNVLNPGEIAATGGTS- 263
Query: 336 ETALMVLQKLHKLKSICYDPVSFVKTQLHV 365
V+ ++ + YD +S V T HV
Sbjct: 264 ----GVVYGVN--GKVNYDTLSRVNTFAHV 287
>gi|423332039|ref|ZP_17309823.1| hypothetical protein HMPREF1075_01836 [Parabacteroides distasonis
CL03T12C09]
gi|409229880|gb|EKN22752.1| hypothetical protein HMPREF1075_01836 [Parabacteroides distasonis
CL03T12C09]
Length = 494
Score = 40.4 bits (93), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 59/150 (39%), Gaps = 12/150 (8%)
Query: 216 DRYHICKEDFDFFWVRTTDFSVTKSIGCSTSFFWEIKNGLLASDISNIFPFYKEDKTDLI 275
DR H DF +R T VT G S FW+ KN L+ ++ N + F K DLI
Sbjct: 152 DRIHKIMLPGDFIAMRLTGDIVTTVSGLSEGIFWDFKNNALSEELMNYYGFSK----DLI 207
Query: 276 LEEGEEFCTTSEIVPLVKCRPGFNLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSM 335
+ F E+ V G V ++ +N +SL + I G S
Sbjct: 208 ADIRPTFGLQGEVTASVAAELGLKKGTPVTYRAGDQPNNA-LSLNVLNPGEIAATGGTS- 265
Query: 336 ETALMVLQKLHKLKSICYDPVSFVKTQLHV 365
V+ ++ + YD +S V T HV
Sbjct: 266 ----GVVYGVN--GKVNYDTLSRVNTFAHV 289
>gi|330791359|ref|XP_003283761.1| hypothetical protein DICPUDRAFT_74732 [Dictyostelium purpureum]
gi|325086384|gb|EGC39775.1| hypothetical protein DICPUDRAFT_74732 [Dictyostelium purpureum]
Length = 630
Score = 40.4 bits (93), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 12/119 (10%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKA 64
TV+VS I Q + KDL SK GK V +++I D+ K++G+G V+F +A
Sbjct: 209 TVFVSKISQNVVDKDLYDLF-SKAGK--VLGVQLIVDKVTKKNKGVGYVEFAEKVMVERA 265
Query: 65 QNLSLNDKLVFNSQNLKISETHSD---IVPRPVKA-QHRVEDGVLHVGVMCKEERLRVL 119
LS + + Q + + + P + A Q R+ G +H+ V EE++RV+
Sbjct: 266 VALSGS---YLDGQAITVHAIQPEKKTTKPTGISAEQSRIYVGYIHLSVT--EEQIRVI 319
>gi|255013981|ref|ZP_05286107.1| xylulose kinase [Bacteroides sp. 2_1_7]
gi|410101787|ref|ZP_11296715.1| hypothetical protein HMPREF0999_00487 [Parabacteroides sp. D25]
gi|409239585|gb|EKN32369.1| hypothetical protein HMPREF0999_00487 [Parabacteroides sp. D25]
Length = 494
Score = 40.4 bits (93), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 59/150 (39%), Gaps = 12/150 (8%)
Query: 216 DRYHICKEDFDFFWVRTTDFSVTKSIGCSTSFFWEIKNGLLASDISNIFPFYKEDKTDLI 275
DR H DF +R T VT G S FW+ KN L+ ++ N + F K DLI
Sbjct: 152 DRIHKIMLPGDFIAMRLTGDIVTTVSGLSEGIFWDFKNNALSEELMNYYGFSK----DLI 207
Query: 276 LEEGEEFCTTSEIVPLVKCRPGFNLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSM 335
+ F E+ V G V ++ +N +SL + I G S
Sbjct: 208 ADIRPTFGLQGEVTASVAAELGLKKGTPVTYRAGDQPNNA-LSLNVLNPGEIAATGGTS- 265
Query: 336 ETALMVLQKLHKLKSICYDPVSFVKTQLHV 365
V+ ++ + YD +S V T HV
Sbjct: 266 ----GVVYGVN--GKVNYDTLSRVNTFAHV 289
>gi|150007431|ref|YP_001302174.1| xylulose kinase [Parabacteroides distasonis ATCC 8503]
gi|149935855|gb|ABR42552.1| xylulose kinase [Parabacteroides distasonis ATCC 8503]
Length = 494
Score = 40.4 bits (93), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 59/150 (39%), Gaps = 12/150 (8%)
Query: 216 DRYHICKEDFDFFWVRTTDFSVTKSIGCSTSFFWEIKNGLLASDISNIFPFYKEDKTDLI 275
DR H DF +R T VT G S FW+ KN L+ ++ N + F K DLI
Sbjct: 152 DRIHKIMLPGDFIAMRLTGDIVTTVSGLSEGIFWDFKNNALSEELMNYYGFRK----DLI 207
Query: 276 LEEGEEFCTTSEIVPLVKCRPGFNLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSM 335
+ F E+ V G V ++ +N +SL + I G S
Sbjct: 208 ADIRPTFGLQGEVTASVAAELGLKKGTPVTYRAGDQPNNA-LSLNVLNPGEIAATGGTS- 265
Query: 336 ETALMVLQKLHKLKSICYDPVSFVKTQLHV 365
V+ ++ + YD +S V T HV
Sbjct: 266 ----GVVYGVN--GKVNYDTLSRVNTFAHV 289
>gi|262382034|ref|ZP_06075172.1| xylulose kinase [Bacteroides sp. 2_1_33B]
gi|262297211|gb|EEY85141.1| xylulose kinase [Bacteroides sp. 2_1_33B]
Length = 494
Score = 40.0 bits (92), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 59/150 (39%), Gaps = 12/150 (8%)
Query: 216 DRYHICKEDFDFFWVRTTDFSVTKSIGCSTSFFWEIKNGLLASDISNIFPFYKEDKTDLI 275
DR H DF +R T VT G S FW+ KN L+ ++ N + F K DLI
Sbjct: 152 DRIHKIMLPGDFIAMRLTGDIVTTVSGLSEGIFWDFKNNALSEELMNYYGFSK----DLI 207
Query: 276 LEEGEEFCTTSEIVPLVKCRPGFNLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSM 335
+ F E+ V G V ++ +N +SL + I G S
Sbjct: 208 ADIRPTFGLQGEVTASVAAELGLKKGTPVTYRAGDQPNNA-LSLNVLNPGEIAATGGTS- 265
Query: 336 ETALMVLQKLHKLKSICYDPVSFVKTQLHV 365
V+ ++ + YD +S V T HV
Sbjct: 266 ----GVVYGVN--GKVNYDTLSRVNTFAHV 289
>gi|410659225|ref|YP_006911596.1| RNA-binding region RNP-1 [Dehalobacter sp. DCA]
gi|410662211|ref|YP_006914582.1| RNA-binding region RNP-1 [Dehalobacter sp. CF]
gi|409021580|gb|AFV03611.1| RNA-binding region RNP-1 [Dehalobacter sp. DCA]
gi|409024567|gb|AFV06597.1| RNA-binding region RNP-1 [Dehalobacter sp. CF]
Length = 84
Score = 40.0 bits (92), Expect = 7.4, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 47/80 (58%), Gaps = 6/80 (7%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKA 64
T++V N+P + +++L + ++ G +V IITDR +SRG G V+ S D + A
Sbjct: 4 TLYVGNLPWSTTSEELTEYF-ARFG--NVIGSRIITDRETGRSRGFGFVEVASEDAERLA 60
Query: 65 QNLSLNDKLVFNSQNLKISE 84
+ L+ ++ FN ++L ++E
Sbjct: 61 EELNGSE---FNDRSLTVNE 77
>gi|357458133|ref|XP_003599347.1| hypothetical protein MTR_3g031900 [Medicago truncatula]
gi|355488395|gb|AES69598.1| hypothetical protein MTR_3g031900 [Medicago truncatula]
Length = 1110
Score = 40.0 bits (92), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Query: 652 VKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLS 711
VKD + M + +LL I E ++L K G D ++ K+LL VE +S
Sbjct: 95 VKDFAYADMNTKTKVLLK---IQNE---NLLPKGGGSDQPSLEHKILLHFVIKGVEANIS 148
Query: 712 MMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGI---LNYGQVFV 756
+ H +QL + + R +VP GRLL F + GI L Q+F
Sbjct: 149 RYIFRHMVHQLRESQQNNRFWVPYGRLLSEIFHQGGIIDLLKEAQIFT 196
>gi|301096404|ref|XP_002897299.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262107183|gb|EEY65235.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 800
Score = 39.7 bits (91), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 81/187 (43%), Gaps = 14/187 (7%)
Query: 562 SDGIGKISLSFARQVAQ---KCGLSHTPSAFQIRYGGYKGVIAVDRNS----FRKLSLRR 614
+D G++ L+F+R A+ K S +P+ + K ++ +DRN+ KLS+
Sbjct: 129 TDAKGELHLTFSRPAARVKAKSVASESPNLLYVTIDSGKDLLPMDRNNSSDPLVKLSVVG 188
Query: 615 SMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDE--VFEAMQQQQLILLGKML 672
+ E+ + L W E FL R+ + L L ++ + + + + QL+L +
Sbjct: 189 QRHQTETVAKTLK-PHWDERF-AFLLRDAHTTLELLAEDEDRTINDFLGRAQLVLADVVE 246
Query: 673 INREAALDVL---QKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRC 729
+ E + V +KL+ + L LL Y+PN E ++ L LK
Sbjct: 247 PHEEKTVTVTLLDRKLHPDKDRGTLKLRLLWVYDPNAESITKSAKKKKDKSILQSLKQSM 306
Query: 730 RIYVPKG 736
R+ P G
Sbjct: 307 RVSAPAG 313
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,274,828,282
Number of Sequences: 23463169
Number of extensions: 717408622
Number of successful extensions: 1547447
Number of sequences better than 100.0: 830
Number of HSP's better than 100.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 176
Number of HSP's that attempted gapping in prelim test: 1541714
Number of HSP's gapped (non-prelim): 1384
length of query: 1131
length of database: 8,064,228,071
effective HSP length: 154
effective length of query: 977
effective length of database: 8,745,867,341
effective search space: 8544712392157
effective search space used: 8544712392157
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 83 (36.6 bits)