BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001183
(1131 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O82504|RDR2_ARATH RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana GN=RDR2 PE=3
SV=1
Length = 1133
Score = 1502 bits (3888), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 719/1132 (63%), Positives = 895/1132 (79%), Gaps = 26/1132 (2%)
Query: 4 ATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSK 63
+TV +SN+PQT +A +LL FLE LG+++VFALEI T R NWK R RVQFT+L+ KS+
Sbjct: 10 STVKISNVPQTIVADELLRFLELHLGEDTVFALEIPTTRDNWKPRDFARVQFTTLEVKSR 69
Query: 64 AQNLSLNDKLVFNSQNLKISETHSDIVPRPVKAQHRVEDGVLHVGV-MCKEERLRVLQTF 122
AQ LS KL+F + NL++SE + DI+PRPV + R++D VL VG E+R L+ +
Sbjct: 70 AQLLSSQSKLLFKTHNLRLSEAYDDIIPRPVDPRKRLDDIVLTVGFPESDEKRFCALEKW 129
Query: 123 EGVRGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFSLD 182
+GVR W+L ++RR+EFWVW +S DC +K+E+ FED++ET+ ++
Sbjct: 130 DGVRCWILTEKRRVEFWVW----------------ESGDC-YKIEVRFEDIIETLSCCVN 172
Query: 183 EGAT-VNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKSI 241
A+ ++ L KLKYGPK++++V+ H+A+KF SDRY CKEDFDF W+RTTDFS +KSI
Sbjct: 173 GDASEIDAFLLKLKYGPKVFKRVT-VHIATKFKSDRYRFCKEDFDFMWIRTTDFSGSKSI 231
Query: 242 GCSTSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTTSEIVPLVKCRP-GFNL 300
G ST F E+ NG DI + P+Y+ED L +G+ F + ++IVPL+ G
Sbjct: 232 GTSTCFCLEVHNGSTMLDIFSGLPYYREDTLSLTYVDGKTFASAAQIVPLLNAAILGLEF 291
Query: 301 SHEVLFQLNSLVHNQKVSLVAA-DAELIQILSGLSMETALMVLQKLHKLKSICYDPVSFV 359
+E+LFQLN+LVH QK+SL AA D ELI+IL G+S+ETAL++L+KLH+ SICYDPV FV
Sbjct: 292 PYEILFQLNALVHAQKISLFAASDMELIKILRGMSLETALVILKKLHQQSSICYDPVFFV 351
Query: 360 KTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKY 419
KTQ+ + + K P S++KRL + N+MSC RA VTP KIY LGPELET+NYVVKNFA++
Sbjct: 352 KTQMQSVVKKMKHSPASAYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEH 411
Query: 420 ASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEF 479
SDFMRVTFVEEDWSKLPANALS + + G F KP RT IY+R+L+IL +GI +G K +EF
Sbjct: 412 VSDFMRVTFVEEDWSKLPANALSVNSKEGYFVKPSRTNIYNRVLSILGEGITVGPKRFEF 471
Query: 480 LAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVV 539
LAFSASQLR NSVWMFASN++V AED+R WMGCF KIRS+SKCAARMGQLFS+S+QTL+V
Sbjct: 472 LAFSASQLRGNSVWMFASNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIV 531
Query: 540 PVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGV 599
QDVE IPD+EVT+DG YCFSDGIGKISL+FA+QVAQKCGLSH PSAFQIRYGGYKGV
Sbjct: 532 RAQDVEQIPDIEVTTDGADYCFSDGIGKISLAFAKQVAQKCGLSHVPSAFQIRYGGYKGV 591
Query: 600 IAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEA 659
IAVDR+SFRKLSLR SMLKF+S NRMLNVT+W+ESMPCFLNREII LLSTLG++D +FEA
Sbjct: 592 IAVDRSSFRKLSLRDSMLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEA 651
Query: 660 MQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHE 719
MQ L +LG ML +R+AAL+VLQKL+G +SKN+LVKMLLQGY P+ EPYLSMML HHE
Sbjct: 652 MQAVHLSMLGNMLEDRDAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHE 711
Query: 720 NQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDK 779
+QLS+LKSRCRI VPKGR+LIGC DE GIL YGQV+VRVT+T+ EL+S+DQS+F ++D++
Sbjct: 712 SQLSELKSRCRILVPKGRILIGCMDEMGILEYGQVYVRVTLTKAELKSRDQSYFRKIDEE 771
Query: 780 TSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDL 839
TS+V GKV+VTKNPCLHPGD+RVL+A+YE+ EEK Y+DCIIFPQKGERPHPNECSGGDL
Sbjct: 772 TSVVIGKVVVTKNPCLHPGDIRVLDAIYEVHFEEKGYLDCIIFPQKGERPHPNECSGGDL 831
Query: 840 DGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTA 899
DGD FF+SWD +IP E +PPMDY G R R+MDHDVTLEEIHKFFVDYMI+DTLG ISTA
Sbjct: 832 DGDQFFVSWDEKIIPSEMDPPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVISTA 891
Query: 900 HLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRY 959
HLVHADRDP+KARS KCL LA LHS AVDFAKTGAPAEMP ALKP+EFPDF+ER +KP Y
Sbjct: 892 HLVHADRDPEKARSQKCLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTY 951
Query: 960 ISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEE 1019
IS V GKLYRA S+ Q + A + +A YD LE GFE+F+ A++H++MY E
Sbjct: 952 ISESVFGKLYRAVKSSLAQRKPEAESEDTVA---YDVTLEEAGFESFIETAKAHRDMYGE 1008
Query: 1020 EMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGS 1079
++ +LM YYGA+ E+EILTG L+ + YL RDNRRYGDMKDRI LS K+L EA WF
Sbjct: 1009 KLTSLMIYYGAANEEEILTGILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGWFEK 1068
Query: 1080 SCK-ENEHPQLASAWYHVTYSPSYCKERMALLSFPWIVGDILLNIKSVNSRK 1130
SC+ E + +LASAWY+VTY+P++ E++ LSFPWIVGD+LL+IK+ N+++
Sbjct: 1069 SCEDEQQKKKLASAWYYVTYNPNHRDEKLTFLSFPWIVGDVLLDIKAENAQR 1120
>sp|Q7XM31|RDR2_ORYSJ Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp.
japonica GN=RDR2 PE=2 SV=1
Length = 1136
Score = 1121 bits (2899), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 579/1124 (51%), Positives = 768/1124 (68%), Gaps = 31/1124 (2%)
Query: 8 VSNIPQTAIAKDLLLFLESKLGKNSVFAL-EIITDRSNWKSRGIGRVQFTSLDFKSKAQN 66
VSNIP +A+A +LL F +S + EI W SRG G VQF S + A
Sbjct: 14 VSNIPPSAVAAELLAFFDSAVAVAGGAFACEIAAAHRGWLSRGHGTVQFGSAAAAAAAAG 73
Query: 67 LSLNDKLV-FNSQNLKISETHSDIVPRPVKAQHRVEDGVLHVGVMCKEERLRVLQTFEGV 125
L+ + +L F L +S + D++PR R L VG E ++GV
Sbjct: 74 LASSGRLPRFLGALLSVSPSPVDLLPRASDLSLRAAGAGLVVGDRVAERVFEAADAWDGV 133
Query: 126 RGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFSLDEGA 185
R ++P +RR++ ++ +H+ + +K+E+LFED+ + +G +LD
Sbjct: 134 RAEVIPGKRRVDLYL--EHDSQR---------------YKLEVLFEDMKDCLGCTLD--- 173
Query: 186 TVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKSIGCST 245
+ IL +L Y P+I+ +SGP V S+F DR+H CKED F WVR DF+ S G +
Sbjct: 174 GMGAILLQLNYAPRIHTAISGPAVNSRFMDDRFHACKEDAKFSWVRALDFTPNYSFGRCS 233
Query: 246 SFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTTSEIVPLVKCRPGFNLSHEVL 305
+ ++ L SDI PF + +L + + +S +VPLV C +++ +EVL
Sbjct: 234 TLVLKLGKSALVSDILKSLPF-SGNLGELTMNSMDGVGASSNVVPLVHCPRDYSVPYEVL 292
Query: 306 FQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSFVKTQLHV 365
F+LNSL+H K+ +A+L + L L ++ + + +K+HKL+S CY P+ F++ + +
Sbjct: 293 FRLNSLMHMGKIVAKHVNADLFKALQELPVDVSRRIFEKMHKLESTCYGPLQFIQQEAYS 352
Query: 366 LGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMR 425
+ R+ + + + + +M CYR +TP KI+C GPE E +NYVVK+ + YASDF+R
Sbjct: 353 MKRSHNVLLSNEGEGEGERKLMKCYRVNITPSKIFCFGPEEEVTNYVVKHHSAYASDFVR 412
Query: 426 VTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSAS 485
VTFV+EDWSKL +NA+S I++G FSKP++T +Y RIL+IL+ G IG K++EFLAFSAS
Sbjct: 413 VTFVDEDWSKLSSNAISARIEQGFFSKPFKTGLYYRILSILKKGFSIGPKNFEFLAFSAS 472
Query: 486 QLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVE 545
QLR NSVWMFASN ++A +R WMG F IRSVSKCAARMGQLFSSS+QT V DVE
Sbjct: 473 QLRGNSVWMFASNASLNAGGIRRWMGHFENIRSVSKCAARMGQLFSSSRQTFEVLRWDVE 532
Query: 546 MIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHT--PSAFQIRYGGYKGVIAVD 603
+IPD+E+T+DG+ Y FSDGIGKISL FA++VA GL T PSAFQIRYGGYKGVIA+D
Sbjct: 533 VIPDIEITTDGSKYIFSDGIGKISLRFAKRVAHHVGLDPTNLPSAFQIRYGGYKGVIAID 592
Query: 604 RNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQ 663
S LSLR SM KFES +RMLN+T WS+S PC++NREIISLLSTLG++DE+F AMQQ
Sbjct: 593 PMSSIDLSLRPSMKKFESESRMLNITSWSKSQPCYVNREIISLLSTLGIRDEIFVAMQQD 652
Query: 664 QLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLS 723
++ +ML N+E AL VL KL G ++K VKMLLQGYEP+ EPYLSM+L +H EN+L+
Sbjct: 653 EMRETEEMLTNKEVALSVLGKLGGSETKTA-VKMLLQGYEPSSEPYLSMILKAHQENRLT 711
Query: 724 DLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIV 783
D+++RC+I+VPKGR+LIGC DETG+L YGQV++R+T +E + +QS+F+ D KT+ V
Sbjct: 712 DIRTRCKIHVPKGRVLIGCLDETGVLEYGQVYIRITKNSKEQKDSNQSYFYNDDGKTATV 771
Query: 784 KGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDI 843
GKV +TKNPCLHPGD+RVLEA+Y+ L VDC++FPQ+GERPHPNECSGGDLDGD+
Sbjct: 772 VGKVAITKNPCLHPGDIRVLEAIYDPDL--VGMVDCLVFPQRGERPHPNECSGGDLDGDL 829
Query: 844 FFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVH 903
+FI+WD+ LIP + + PMDYT R RIMDH VTLEEI K FVDYMIND+LGAISTAHL+H
Sbjct: 830 YFITWDDKLIPEKVDTPMDYTATRPRIMDHVVTLEEIQKHFVDYMINDSLGAISTAHLIH 889
Query: 904 ADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFG 963
ADR P KARS +CL LATLHSMAVDFAKTGAPAEMP L+P+E+PDFMER +KP YIS G
Sbjct: 890 ADRSPLKARSPECLQLATLHSMAVDFAKTGAPAEMPRTLRPREYPDFMERWEKPMYISNG 949
Query: 964 VLGKLYRATLDSIMQIRSNAIWSEKIAEAS--YDHDLEVDGFEAFLGVAESHKEMYEEEM 1021
VLGKLYR+ + + + + S A+ S YD DLEV G + FL AE + E+YEE++
Sbjct: 950 VLGKLYRSAMGHMEKSGDSGALSSSSAQPSPTYDPDLEVPGSDEFLQAAEEYYELYEEKL 1009
Query: 1022 NALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSC 1081
LMNYY A EDEILTGN+RN+ YL+RDN+RY +MKDRI+ + L EA+ W SS
Sbjct: 1010 TTLMNYYRAELEDEILTGNIRNKMLYLKRDNKRYFEMKDRIVAAVDALHREARGWLLSSR 1069
Query: 1082 KENEHPQLASAWYHVTYSPSYCKERMALLSFPWIVGDILLNIKS 1125
KE + ++ASAWY VTY P + + SFPWI D LL IK+
Sbjct: 1070 KEEDASRMASAWYRVTYHPDRRRGKR-FWSFPWIACDNLLAIKA 1112
>sp|Q9LQV2|RDR1_ARATH RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana GN=RDR1 PE=2
SV=1
Length = 1107
Score = 782 bits (2020), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/1138 (40%), Positives = 669/1138 (58%), Gaps = 69/1138 (6%)
Query: 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKA 64
T+ V P A+++ FLE G +V+A+++ + R VQFTS + ++
Sbjct: 4 TIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKG-GPRVYAIVQFTS-ERHTRL 61
Query: 65 QNLSLNDKLVFNSQNLKISETHSDIVPRPVKAQHRVEDGVLHVGVMCKEERLRVLQTFEG 124
+ ++L + LK E DIVP+P + H + + G ++ L + +
Sbjct: 62 IITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQD 121
Query: 125 VRGWLLPDRRRLEF-WVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFSLDE 183
V R+L F + W +QK +++E+ +E++ + + +
Sbjct: 122 VCVSFGIGMRKLHFSFSW------YQKD------------YRLELSYENIWQ-IDLHSPQ 162
Query: 184 GATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKSIGC 243
G + ++ ++ PKI++K P D Y + D W+RTTDF+ + IG
Sbjct: 163 GRSSKFLVIQVIGAPKIFEKEDQPINLLFGIMDFY---SDGSDEQWIRTTDFTSSSCIGQ 219
Query: 244 STSFFWEIKNGLLASDISNIFPFYKEDK-TDLILEEGEEFCTTSE-IVPLVKCRPGFNLS 301
ST+F E+ L D F Y E + + ++E G + + + +VP+V PGF+L
Sbjct: 220 STAFCLELPVHLNVPDFRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLP 279
Query: 302 HEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALM--VLQKLHKLKSICYDPVSFV 359
E+LF+LN+LV N +S A D + ++L+ + AL+ L+KL L CY+P ++
Sbjct: 280 FEILFKLNTLVQNACLSGPALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWL 339
Query: 360 KTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKY 419
+ + K +PLS L D ++ YR VTP ++Y GPE+ SN V+++++KY
Sbjct: 340 RDEYKKWISKGK-LPLSPTISL-DDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKY 397
Query: 420 ASDFMRVTFVEEDWSKLPANALS--TSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHY 477
++F+RV+FV+ED K+ + LS +S QR RTK+Y RI ++L+DGIVIGDK +
Sbjct: 398 INNFLRVSFVDEDLEKVRSMDLSPRSSTQR-------RTKLYDRIYSVLRDGIVIGDKKF 450
Query: 478 EFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTL 537
EFLAFS+SQLR NS WMFA D ++A +R WMG F+ IR+V+K AAR+GQ FSSS++TL
Sbjct: 451 EFLAFSSSQLRENSAWMFAPIDRITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETL 510
Query: 538 VVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSH-TPSAFQIRYGGY 596
V ++E+IPDVE+ S G Y FSDGIGKIS FAR+VA+KCGL+ +PSAFQIRYGGY
Sbjct: 511 NVRSDEIEVIPDVEIISLGTRYVFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGY 570
Query: 597 KGVIAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEV 656
KGV+AVD NS +KLSLR+SM KFES N L+V WS+ PC++NR++I+LLSTLGV D V
Sbjct: 571 KGVVAVDPNSSKKLSLRKSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSV 630
Query: 657 FEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLS 716
FE Q++ + L +L + A + L + ++ NIL ++L GY+P+ EP+LSMML +
Sbjct: 631 FEKKQREVVDRLDAILTHPLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQN 690
Query: 717 HHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRV 776
++L +L+++ RI++ GR ++GC DET L YGQV V+ +
Sbjct: 691 FRASKLLELRTKTRIFISGGRSMMGCLDETRTLEYGQVVVQYSDPMRP------------ 738
Query: 777 DDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSG 836
+ I+ G V+V KNPCLHPGDVRVL+AV L VDC++FPQKG RPHPNECSG
Sbjct: 739 -GRRFIITGPVVVAKNPCLHPGDVRVLQAVNVPALNH--MVDCVVFPQKGLRPHPNECSG 795
Query: 837 GDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAI 896
DLDGDI+F+ WD +L+P T PMDYT ++I+DHDVT+EE+ ++F +Y++ND+LG I
Sbjct: 796 SDLDGDIYFVCWDQELVPPRTSEPMDYTPEPTQILDHDVTIEEVEEYFANYIVNDSLGII 855
Query: 897 STAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDK 956
+ AH AD++P KA S C+ LA S AVDF KTG A +P L KE+PDFME+ DK
Sbjct: 856 ANAHTAFADKEPLKAFSDPCIELAKKFSTAVDFPKTGVAAVIPQHLYVKEYPDFMEKPDK 915
Query: 957 PRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEM 1016
P Y S V+GKL+R + + S ++ +A SYD D+EVDGFE ++ A K
Sbjct: 916 PTYESKNVIGKLFREVKERAPPLISIKSFTLDVASKSYDKDMEVDGFEEYVDEAFYQKAN 975
Query: 1017 YEEEMNALMNYYGASTEDEILTGN-LRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKE 1075
Y+ ++ LM+YYG TE EIL+G +R S+ +R + + I + + L+ E
Sbjct: 976 YDFKLGNLMDYYGIKTEAEILSGGIMRMSKSFTKRRD------AESIGRAVRALRKETLS 1029
Query: 1076 WFGSSCKENEHPQLASAWYHVTYSPSYCK------ERMALLSFPWIVGDILLNIKSVN 1127
F +S +E ASAWYHVTY SY R LSF W V D L+ IK N
Sbjct: 1030 LFNASEEEENESAKASAWYHVTYHSSYWGLYNEGLNRDHFLSFAWCVYDKLVRIKKTN 1087
>sp|Q0DXS3|RDR1_ORYSJ Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp.
japonica GN=RDR1 PE=2 SV=2
Length = 740
Score = 651 bits (1680), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/739 (46%), Positives = 479/739 (64%), Gaps = 41/739 (5%)
Query: 399 IYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKI 458
+Y GPE+ SN VV+NF+ +F+R++FV+ED KL A LS G RT +
Sbjct: 9 VYFYGPEINVSNRVVRNFSSDIENFLRISFVDEDCEKLRATDLSPRSASG--HDANRTAL 66
Query: 459 YSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRS 518
Y R+L++L DGI IG K++EFLAFS+SQLR+NS WMFAS ++A D+R WMG F IR+
Sbjct: 67 YKRVLSVLSDGITIGGKNFEFLAFSSSQLRDNSAWMFASRQGLAASDIRTWMGDFRNIRN 126
Query: 519 VSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQ 578
V+K AAR+GQ FSSS +TL V +VE I D++ +G + FSDGIGKIS +FA +VA
Sbjct: 127 VAKYAARLGQSFSSSTETLKVQKYEVEEISDIK---NGTQHVFSDGIGKISSAFANEVAM 183
Query: 579 KCGLSH-TPSAFQIRYGGYKGVIAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPC 637
KC L PSAFQIRYGGYKGV+AVD S KLSLR+SMLKF+S N ++V +S+ P
Sbjct: 184 KCNLKRFAPSAFQIRYGGYKGVVAVDPTSRWKLSLRKSMLKFQSDNITVDVLAYSKYQPG 243
Query: 638 FLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKM 697
FLNR++I+LLSTLGV+D VFE Q++ + L KM+ + +AA++ ++ + + N + ++
Sbjct: 244 FLNRQLITLLSTLGVRDSVFEQKQEEAVNQLNKMVTDPQAAIEAIELMPMGEITNAVKEL 303
Query: 698 LLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVR 757
LL GY+P+ EPYLSM+L + ++L +LK++ RI +PKGR ++GC DET L YGQVF+R
Sbjct: 304 LLCGYQPDDEPYLSMLLQTFRASKLLELKTKSRILIPKGRAMMGCLDETRTLKYGQVFIR 363
Query: 758 VTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYV 817
T D+ V GKV++ KNPCLHPGD+R+L AV L
Sbjct: 364 ATSGVN-------------DNDRFTVTGKVVIAKNPCLHPGDIRILHAVDVPVLHH--MF 408
Query: 818 DCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTL 877
+C++FPQ+G RPHPNECSG DLDGDI+F+SWD LIP PMDYT + +DHDVT+
Sbjct: 409 NCVVFPQQGPRPHPNECSGSDLDGDIYFVSWDPSLIPPRMVTPMDYTPAPTETLDHDVTI 468
Query: 878 EEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAE 937
EE+ ++F +Y++N++LG I+ AH+V AD++ KA SS C+ LA L S+AVDF KTG PA
Sbjct: 469 EEVEEYFTNYIVNESLGMIANAHVVFADKEDLKAESSPCIELAKLFSIAVDFPKTGVPAL 528
Query: 938 MPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHD 997
+P L KE+PDFME+ DK Y S GV+GKLYR I+ ++ ++A SYD D
Sbjct: 529 IPPELHVKEYPDFMEKLDKVTYESKGVIGKLYREIKKHTPHIKH---FTREVARRSYDTD 585
Query: 998 LEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGD 1057
+ VDG+E ++ A + K+ Y+ ++ LM++YG +E EI++G + A + +
Sbjct: 586 MIVDGYEDYITEAMALKDEYDFKLGNLMDHYGIKSEAEIISGCILKMAKNFTKKSD---- 641
Query: 1058 MKDRILLSAKNLQNEAKEWFGS-SCKENEHPQ-----LASAWYHVTYSPSY--C----KE 1105
D I L+ ++L+ EA+ F S +N H ASAWYHVTY P + C E
Sbjct: 642 -ADAIRLAVRSLRKEARSRFSEMSLDDNGHGHDASEAKASAWYHVTYHPEFWGCYNEGYE 700
Query: 1106 RMALLSFPWIVGDILLNIK 1124
R +SFPW + + LL IK
Sbjct: 701 RPHFISFPWCIYEKLLRIK 719
>sp|Q8LHH9|SHL2_ORYSJ Probable RNA-dependent RNA polymerase SHL2 OS=Oryza sativa subsp.
japonica GN=SHL2 PE=2 SV=1
Length = 1218
Score = 549 bits (1414), Expect = e-155, Method: Compositional matrix adjust.
Identities = 339/861 (39%), Positives = 481/861 (55%), Gaps = 54/861 (6%)
Query: 299 NLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSF 358
L +LF +N+LVH ++ E +L + L+ K +D
Sbjct: 351 GLKFPLLFMVNALVHKGIINQHQLTPEFFSLLGRSEENVNVAALRDFWGDKFPVFDACGR 410
Query: 359 VKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAK 418
+K L+ + RN K L K DH R ++TP + YCL PE+E SN V++++ +
Sbjct: 411 LKKALNRVARNPK---LLCSKVGDDH--AEVRRLVITPTRAYCLPPEVERSNRVLRHYHE 465
Query: 419 YASDFMRVTFVEEDWSKLPANALST---SIQRGIFSKPY--RTKIYSRILTILQDGIVIG 473
A F+RVTF++E L N L++ I + + S + +T +Y R+ +L +G +
Sbjct: 466 VADRFLRVTFMDEGMQVLNNNVLNSFTAPIVKDLMSNFFQQKTTVYKRVRMLLTEGFHMC 525
Query: 474 DKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSS 533
+ Y FLAFS++QLR+ S W FA + + + E +R WMG F ++V+K AARMGQ FSS+
Sbjct: 526 GRKYSFLAFSSNQLRDKSAWFFAEDRKTTVEAIRKWMGRFTS-KNVAKHAARMGQCFSST 584
Query: 534 KQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLS-HTPSAFQIR 592
T+ + +V+ D V N Y FSDGIGKI+ A +VA++ L+ + PSA+QIR
Sbjct: 585 YATVTMRPDEVDESFDDVVH---NEYIFSDGIGKITPDLALEVAERLQLTDNPPSAYQIR 641
Query: 593 YGGYKGVIAV--DRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTL 650
+ G+KGVIAV +L LR SM KFES + +L V W++ P FLNR+II LLS+L
Sbjct: 642 FAGFKGVIAVWQGHGDGTRLFLRPSMRKFESNHLVLEVVSWTKFQPGFLNRQIIILLSSL 701
Query: 651 GVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYL 710
V D +F MQ+ L L +L +R+ A +VL + D N ML G+EP EP+L
Sbjct: 702 NVPDSIFWQMQETMLSNLNNILSDRDVAFEVLTT-SCADDGNTAALMLSAGFEPRTEPHL 760
Query: 711 SMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTM-TREELESKD 769
MLL+ QL DL + RI+VPKGR L+GC DE G+L GQ F+R T+ + K
Sbjct: 761 KAMLLAIRSAQLQDLLEKARIFVPKGRWLMGCLDELGVLEQGQCFIRATVPSLNSYFVKH 820
Query: 770 QSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERP 829
S F D T ++ G V++ KNPCLHPGDVR+LEAV +L VDC++FPQKGERP
Sbjct: 821 GSRFSSTDKNTEVILGTVVIAKNPCLHPGDVRILEAVDVPELHH--LVDCLVFPQKGERP 878
Query: 830 HPNECSGGDLDGDIFFISWDNDLIPCETEP--PMDYTGRRSRIMDHDVTLEEIHKFFVDY 887
H NE SG DLDGD++F++WD LIP + PMDY+ ++ + V+ +I FF+
Sbjct: 879 HANEASGSDLDGDLYFVTWDEKLIPPGKKSWNPMDYSPPEAKQLPRQVSQHDIIDFFLKN 938
Query: 888 MINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEF 947
MI++ LG I AH+VHAD A KC+HLA L + AVDF KTG A MP LKPK +
Sbjct: 939 MISENLGRICNAHVVHADLSEYGAMDEKCIHLAELAATAVDFPKTGKLAIMPPHLKPKVY 998
Query: 948 PDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIA---EASYDHDLEVDGFE 1004
PDFM +ED Y S +LG+LYR SI + + + S+++ + YD DLEV G
Sbjct: 999 PDFMGKEDGQSYKSEKILGRLYR----SIQEASNGDVVSQEVCTPNDLPYDIDLEVPGAS 1054
Query: 1005 AFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILL 1064
FL A K Y+ +++AL++ Y TE E++TG++ ++ +++ GD+KDR+
Sbjct: 1055 DFLASAWQCKCSYDAQLSALLSQYRVRTEAELVTGHI---TFLVKNSSKKQGDIKDRLKT 1111
Query: 1065 SAKNLQNEAKEWF----------GSSCKENEHPQLASAWYHVTYSPSYC----------- 1103
+ L+ E K F G K + ASAWY VTY P +
Sbjct: 1112 AYSALRKEFKSTFESIASDQCEIGDDEKNLLYEMKASAWYQVTYHPKWVEKSRGILGPDG 1171
Query: 1104 KERMALLSFPWIVGDILLNIK 1124
+E A LSF WI D L IK
Sbjct: 1172 EEIPASLSFAWIPVDYLARIK 1192
>sp|Q9SG02|RDR6_ARATH RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana GN=RDR6 PE=1
SV=1
Length = 1196
Score = 540 bits (1390), Expect = e-152, Method: Compositional matrix adjust.
Identities = 380/1147 (33%), Positives = 583/1147 (50%), Gaps = 121/1147 (10%)
Query: 53 VQFTSLDFKSKAQNLSLNDKLVFNSQNLKIS----ETHSDIVPRPVKAQHRVEDGVLHVG 108
V F + +A + + L+ + Q LK+S +S R +++ L +G
Sbjct: 81 VHFAVFESAGRAMDAAGQCNLILDGQPLKVSLGPKNPYSLNQRRRTTVPYKLAGITLEIG 140
Query: 109 VMCKEERLRVLQTFEGVRGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEI 168
+ + V EGV + P +F ++ + +C +K+E+
Sbjct: 141 TLVSRDDFFVSWRAEGVDFLVDPFDNTCKFCFRKSTAFSFKDAVMHA---VINCDYKLEL 197
Query: 169 LFEDVLETVGFSLDEGATVNG--ILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFD 226
L D+ ++ + T++G ++ +L P+++ + + + P D
Sbjct: 198 LVRDIQ-----TVRQYKTLHGFVLILQLASSPRVWYRTADDDIYDTVPGDLLDDDDP--- 249
Query: 227 FFWVRTTDFSVTKSIGCSTSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTTS 286
W+RTTDF+ +IG S+ +L S P Y E+K L+
Sbjct: 250 --WIRTTDFTQVGAIGRCHSY------RVLIS------PRY-ENKLRTALDYFRMRRVQE 294
Query: 287 EIV---PLVKCRPGFN---------------LSHEVLFQLNSLVHNQKVSLVAADAELIQ 328
E V P ++ P F +S E++F +NS++H +
Sbjct: 295 ERVRWPPRIRNEPCFGEPVSDHFFCIHHKEGISFEIMFLVNSVLHRGVFNQFQLTERFFD 354
Query: 329 ILSGLSMETALMVLQKLHKLKSICYDPVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMS 388
+L + + L+ L K +D +K + +N K L SH++ ++
Sbjct: 355 LLRNQPKDVNIASLKHLCTYKRPVFDAYKRLKLVQEWIQKNPKL--LGSHEQ--SEDISE 410
Query: 389 CYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALS---TSI 445
R ++TP + YCL PE+E SN V++ + A F+RVTF++E + +N LS I
Sbjct: 411 IRRLVITPTRAYCLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAPI 470
Query: 446 QRGIFSKPY--RTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSA 503
+ + S + +T ++ R+ +IL DG + + Y FLAFSA+QLR+ S W FA + +
Sbjct: 471 VKDLTSSSFSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTRV 530
Query: 504 EDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEM-IPDVEVTSDGNTYCFS 562
D++ WMG F K ++V+KCAARMG FSS+ T+ V +V+ +PD+E N Y FS
Sbjct: 531 SDIKTWMGKF-KDKNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPDIE----RNGYVFS 585
Query: 563 DGIGKISLSFARQVAQKCGLS--HTPSAFQIRYGGYKGVIA--VDRNSFRKLSLRRSMLK 618
DGIG I+ A +V +K L ++P A+QIRY G+KGV+A ++ +L+LR SM K
Sbjct: 586 DGIGTITPDLADEVMEKLKLDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDSMKK 645
Query: 619 FESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAA 678
F S++ +L + W+ P FLNR+II+LLS LGV DE+F MQ+ L L ++L + + A
Sbjct: 646 FFSKHTILEICSWTRFQPGFLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTDVA 705
Query: 679 LDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRL 738
+VL + + N ML G++P EP+L ML S QL L+ + RI+V GR
Sbjct: 706 FEVLTA-SCAEQGNTAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRW 764
Query: 739 LIGCFDETGILNYGQVFVRVTMTR-EELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHP 797
L+GC DE GIL +GQ F++V+ E SK S F +VKG V + KNPCLHP
Sbjct: 765 LMGCLDEAGILEHGQCFIQVSKPSIENCFSKHGSRFKETKTDLEVVKGYVAIAKNPCLHP 824
Query: 798 GDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPC-- 855
GDVR+LEAV +L DC+IFPQKG+RPH NE SG DLDGD++F++WD LIP
Sbjct: 825 GDVRILEAVDVPQLHH--MYDCLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKLIPPNR 882
Query: 856 ETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSK 915
++ P M Y + + V ++I FF + N+ LG I AH+VHADR A +
Sbjct: 883 KSYPAMHYDAAEEKSLGRAVNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYGAMDEE 942
Query: 916 CLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDS 975
CL LA L + AVDF KTG MP LKPK +PDFM +ED Y S +LG+LYR
Sbjct: 943 CLLLAELAATAVDFPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYR----- 997
Query: 976 IMQIRSNAIWSEKIAEAS-----------YDHDLEVDGFEAFLGVAESHKEMYEEEMNAL 1024
R ++ E AEAS YD LE+ GFE + A HK +Y+ ++ L
Sbjct: 998 ----RVKEVYDED-AEASSEESTDPSAIPYDAVLEIPGFEDLIPEAWGHKCLYDGQLIGL 1052
Query: 1025 MNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSCKEN 1084
+ Y E+EI+TG++ + Y +++ G++K+R+ S +L+ E ++ F + ++
Sbjct: 1053 LGQYKVQKEEEIVTGHIWSMPKYT---SKKQGELKERLKHSYNSLKKEFRKVFEETIPDH 1109
Query: 1085 E----------HPQLASAWYHVTYSPSYCKERM-----------ALLSFPWIVGDILLNI 1123
E + + ASAWYHVTY P + K+ + A+LSF WI D L I
Sbjct: 1110 ENLSEEEKNILYEKKASAWYHVTYHPEWVKKSLELQDPDESSHAAMLSFAWIAADYLARI 1169
Query: 1124 KSVNSRK 1130
K + SR+
Sbjct: 1170 K-IRSRE 1175
>sp|O14227|RDR1_SCHPO RNA-dependent RNA polymerase 1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rdr1 PE=1 SV=1
Length = 1215
Score = 333 bits (855), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 251/781 (32%), Positives = 406/781 (51%), Gaps = 74/781 (9%)
Query: 394 VTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKP 453
VTP + + LE N V++NF +A+ FMRV +E + + I+ G S
Sbjct: 459 VTPTTLRIVEDSLEAGNRVIRNFKDFANRFMRVQITDEYYKQ--------KIRGG--SDG 508
Query: 454 YRT-KIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGC 512
+R K+YSRI +L GI +G++ YEFLAF SQLR + + FAS +++A+ +R WMG
Sbjct: 509 FRNEKLYSRIQQLLTYGIKVGNQIYEFLAFGNSQLREHGAYFFASGSDLNAKQIREWMGD 568
Query: 513 FNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSF 572
F++I SVSK AARMGQ FS++K+ V D+ + D+ N +CF+DG+G SLS
Sbjct: 569 FSEINSVSKYAARMGQCFSTTKEINRFCV-DISLQDDIV----RNNHCFTDGVGMASLSV 623
Query: 573 ARQVAQKCGLSHT--PSAFQIRYGGYKGVIAV---DRNSFRKLSL---RRSMLKFESRNR 624
R+++ + +H PSAFQ R GGYKGV+++ + + + +L RRS KF+S +
Sbjct: 624 IRRLSLEVK-NHDMFPSAFQFRMGGYKGVLSLAPPTKLEYHQGNLVFPRRSQDKFKSFHS 682
Query: 625 MLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQ- 683
L V K S LN ++I+LL LGV+ VF + + QL + + + +++ ++ +L+
Sbjct: 683 TLEVIKISRFSNAHLNMQLITLLEGLGVEKTVFLELTRSQLSKMNESINSKQKSILMLRD 742
Query: 684 KLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCF 743
++ S I+ + G+ + + +L ++E L +K + ++ VPKG L+G
Sbjct: 743 NVDEYHSTLIIADFIQAGFLERDDAFTENLLNLYYEWVLRLIKEKQKVSVPKGAYLLGVA 802
Query: 744 DETG---------ILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPC 794
DETG +L+ ++F+++T T S KT ++ G +V +NP
Sbjct: 803 DETGTLKGHYDDAVLSVPEIFIQITDTSTSFGSYSTGKL-----KTRVIVGLCIVARNPS 857
Query: 795 LHPGDVRVLEAVYEMKLEEKDYV-DCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI 853
LHPGDVRV +AV + +E ++ + I+FP G+R P CSGGDLDGD + + WD L+
Sbjct: 858 LHPGDVRVCKAV---RCDELMHLKNVIVFPTTGDRSIPAMCSGGDLDGDEYTVIWDQRLL 914
Query: 854 P-CETEPPMDYTGRRSRI--MDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHA---DRD 907
P PP+ + + I ++ ++ + +FFV+Y+ D+LG IS A A D +
Sbjct: 915 PKIVNYPPLLESSPKKSIDFLEGKPLIDSVKEFFVNYIKYDSLGLISNAWKAWAHDHDNN 974
Query: 908 PDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGK 967
P+ + CL LA +HS AVDFAK+G +M PK +PDFM++ + S +GK
Sbjct: 975 PEGIFGNVCLELAEMHSKAVDFAKSGVACKMQAKYHPKRYPDFMQKTKTRSFRSETAVGK 1034
Query: 968 LYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEA-FLGVAESHKEMYEEEMNALMN 1026
++R + A ++ I YD +++ F+ +L VAE K+ Y+ ++ ++M
Sbjct: 1035 IFRYAARFQRESGRPATYNP-IMNTVYDPCMKLPRFKTEYLNVAEEVKKHYDNDLRSIMA 1093
Query: 1027 YYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRI-----LLSAKNLQN-------EAK 1074
+ STE E+ T + + L + YG +++ + LL K Q +
Sbjct: 1094 RFDISTEYEVYTAFILFKDD-LAKTVNEYG-LREEVSFQFDLLKKKYTQEYLEKCALSNQ 1151
Query: 1075 EWFGSSCKENEHPQLASAWYHVTYSPSYCK----ERMALLSFPWIVGDILLNIKSVNSRK 1130
F SS E +A Y VTY L+SFP++ L + SRK
Sbjct: 1152 SAFDSSEYEERINSAVAATYDVTYDQRVKSVGNGTTEVLISFPYLFSSRLCQL----SRK 1207
Query: 1131 A 1131
A
Sbjct: 1208 A 1208
>sp|O82188|RDR5_ARATH Probable RNA-dependent RNA polymerase 5 OS=Arabidopsis thaliana
GN=RDR5 PE=2 SV=2
Length = 977
Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 159/607 (26%), Positives = 255/607 (42%), Gaps = 119/607 (19%)
Query: 451 SKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQ-----------------LRNNSVW 493
S Y Y I ++GI+IG + Y+F F +R +S
Sbjct: 256 SSTYSIDHYFTYKGIAKNGIMIGLRRYQFFVFKDGGKEEKKKDLSTKKVKCYFIRTDSTA 315
Query: 494 MFASNDEV-----SAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDV--EM 546
+ + S + R ++ +++ AR + S +K TL V + + +
Sbjct: 316 FYDMQNPYILTGKSIYEARMHFMHVHRAPTLANYMARFSLILSKTK-TLEVDMTGITFDQ 374
Query: 547 IPDV--------EVTSDGNTYCF-SDGIGKISLSFAR--------------QVAQKCGLS 583
I D+ +V C SDG G IS AR + Q+
Sbjct: 375 IDDIHCHDQDGKDVLDKNKKPCIHSDGTGYISEDLARMCPLNIFKGKCLRSESIQEACYQ 434
Query: 584 HTPSAFQIR--YGGY--KGVIAVDRN-SFRKLSLRRSMLK---------FESRNRMLNVT 629
P Q R Y GY KG +++ R + +R SM+K F + N + VT
Sbjct: 435 DPPLLIQFRMFYDGYAVKGTFLLNKKLCPRTVQVRPSMIKVSKDPSLSNFSTFNALEVVT 494
Query: 630 KWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVD 689
+ L++ +++LLS G+ +E F + L + N+ AAL+ +D
Sbjct: 495 TSNPPKRTKLSKNLVALLSYGGIPNEFFLDILLNTLEESKSIFYNKRAALNAALNYGEMD 554
Query: 690 SKNILVKMLLQGY---EPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDET 746
+N +M+L G EP+++ YLS++L + + +DLK+ ++ V + L+G D T
Sbjct: 555 DQNA-AQMILVGIPLDEPHLKNYLSILL----KTEKNDLKA-GKLPVTESYYLMGTVDPT 608
Query: 747 GILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAV 806
G L +V V + ++ + G+VLV +NP LH GD+ +L+A
Sbjct: 609 GALKEDEVCVIL--------------------ESGQISGEVLVYRNPGLHFGDIHILKAT 648
Query: 807 YEMKLEEKDYVD----CIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI----PCE-- 856
Y LEE YV + FPQKG R +E +GGD DGD++FIS + +L+ P E
Sbjct: 649 YVKALEE--YVGNSKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPELLENFKPSEPW 706
Query: 857 ---TEPPMDYTGRRSRIMDHDVTLEE---------IHKFFVDYMINDTLGAISTAHLVHA 904
T P +GR + + EE H V + D+ I L+
Sbjct: 707 VSLTPPSKSNSGRAPSQLSPEELEEELFEMFLTAGFHASNVIGIAADSWLTIMDRFLILG 766
Query: 905 -DRDPDKAR-SSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISF 962
DR +KA K L L ++ A+D K G +P LKP FP +MER+ K + S
Sbjct: 767 DDRAEEKAEMKKKMLELIDIYYDALDAPKKGDKVYLPNKLKPDIFPHYMERDKK--FQST 824
Query: 963 GVLGKLY 969
+LG ++
Sbjct: 825 SILGLIF 831
>sp|O82190|RDR3_ARATH Probable RNA-dependent RNA polymerase 3 OS=Arabidopsis thaliana
GN=RDR3 PE=3 SV=2
Length = 992
Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 163/635 (25%), Positives = 256/635 (40%), Gaps = 131/635 (20%)
Query: 439 NALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAF---------------- 482
N L+ + + + Y +YS I ++GI++G + Y F F
Sbjct: 248 NVLTVKFDKVLGVETYCNDLYSTYKGIAKNGIMVGLRRYRFFVFKDGGKEEKKKDVSTKG 307
Query: 483 ---------SASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSS 533
S + + + ++FA S + R N + S+ +R + S +
Sbjct: 308 VKCYFIRTDSTASIDMQNPYIFAGK---SMHEARMHFMHVNTLSSLPNYMSRFSLILSKT 364
Query: 534 KQTLVVPVQDV--EMIPDVE---------VTSDGNTYCFSDGIGKISLSFAR-------- 574
K TL V + + E I D+ + +G SDG G IS AR
Sbjct: 365 K-TLEVDMTGITFEQIDDIHCHDQDDKDVLDKNGKPCIHSDGTGYISEDLARMCPVNIFK 423
Query: 575 ----------------QVAQKCGLSHTPSAFQIR--YGGY--KGVIAVDRN-SFRKLSLR 613
+ CG P Q R Y GY KG ++ R + +R
Sbjct: 424 GKSMRSNNIQSKNLNFEGQGPCG-QEPPLLIQFRIFYNGYAVKGTFLTNKKLPPRTVQVR 482
Query: 614 RSMLK-FESR--------NRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQ 664
SM+K +E R N + VT + L+R +++LLS GV ++ F + +
Sbjct: 483 PSMIKVYEDRTLSNLSTFNSLEVVTTSNPPRKARLSRNLVALLSYGGVPNDFFLNILRNT 542
Query: 665 LILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSD 724
L + + AA +N D + M+L G P EPYL L + + +
Sbjct: 543 LEESKTIFYSERAAFKA--AINYGDDQ-YTADMILVGI-PLDEPYLKDRLSYLLKTERNA 598
Query: 725 LKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVK 784
LK+ R + + ++G D TG L ++ V H + +
Sbjct: 599 LKA-GRFPIDESYYIMGTVDPTGELKENEICV---------------ILH-----SGQIS 637
Query: 785 GKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVD----CIIFPQKGERPHPNECSGGDLD 840
G VLV +NP LH GD+ VL+A Y LE DYV + FPQKG R +E +GGD D
Sbjct: 638 GDVLVYRNPGLHFGDIHVLKATYVKALE--DYVGNAKFAVFFPQKGPRSLGDEIAGGDFD 695
Query: 841 GDIFFISWDNDLI----PCE-----TEPPMDYTGRRSRIMDHDVTLEEIHKFFVD--YMI 889
GD++FIS + L+ P E ++P Y GR+ + + EE+ K F+ +
Sbjct: 696 GDMYFISRNPKLLEHFKPSEPWVSSSKPSKIYCGRKPSELSEEELEEELFKMFLKARFCK 755
Query: 890 NDTLG-------AISTAHLVHADRDPDKA--RSSKCLHLATLHSMAVDFAKTGAPAEMPL 940
D +G I L D + R L L ++ A+D K GA ++P
Sbjct: 756 RDVIGMAADCWLGIMDPFLTLGDESAKEKYERKKNILKLIDIYYDALDAPKKGAKVDLPP 815
Query: 941 ALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDS 975
L+ K FP +MER+ K + S +LG ++ T+DS
Sbjct: 816 DLEIKNFPHYMERDPKRDFRSTSILGLIF-DTVDS 849
>sp|O82189|RDR4_ARATH Probable RNA-dependent RNA polymerase 4 OS=Arabidopsis thaliana
GN=RDR4 PE=3 SV=2
Length = 927
Score = 115 bits (289), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 151/595 (25%), Positives = 242/595 (40%), Gaps = 115/595 (19%)
Query: 459 YSRILTILQDGIVIGDKHYEFLAFS----ASQLRNNSVWMF----------ASND----- 499
YS+ I ++GI++G + Y+F F A + + NS AS+D
Sbjct: 268 YSKYKEIAKNGIMVGLRRYQFFVFKDGGKAEKKKRNSTKQVKCYFIRTGSTASSDMENPY 327
Query: 500 ---EVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQ-DVEMIPDVE---- 551
+S + R + + S + AR + S +K+ V + V I D+
Sbjct: 328 ILSGMSIHEARMHFMHVHTLPSPANYMARFSLILSKTKKLEVDMTEITVMQIDDIHCHDQ 387
Query: 552 -----VTSDGNTYCFSDGIGKISLSFARQVA--------------QKCGLSHTPSAFQIR 592
+ +G SDG G IS AR Q + P QIR
Sbjct: 388 SNNDVLDKNGKPRIHSDGTGYISEDLARMCPLNIFKGKSMRSNNIQGTCVQEPPLLIQIR 447
Query: 593 Y----GGYKGVIAVDRN-SFRKLSLRRSMLK---------FESRNRMLNVTKWSESMPCF 638
KG+ +++N + + +R SM+K F + N + VT +
Sbjct: 448 MFNDGSAVKGIFLLNKNLPPQTVQVRPSMIKVYKDKNLSNFSTFNSLEVVTTSNPPKRAK 507
Query: 639 LNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKML 698
L++ +++LLS GV ++ F + L + AA +D KN L +M+
Sbjct: 508 LSKNLVALLSYGGVPNDFFLDILLNTLEKKKTIFFKVRAAGKAALHYGNMDDKNAL-QMI 566
Query: 699 LQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRV 758
+ G P EPYL L + + DLK+ ++ + + L+G D TG
Sbjct: 567 MAGI-PLDEPYLKHYLSKLLKLEKDDLKA-GKLPIDESYYLMGTVDPTG----------- 613
Query: 759 TMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVD 818
EL+ + S + D VLV +NP LH GD+ +L+A Y LE+ YV
Sbjct: 614 -----ELKEDEVSGLAKSQD--------VLVYRNPGLHFGDIHILKATYVKSLEQ--YVG 658
Query: 819 ----CIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLI-------PCETEPPMD--YTG 865
+ FPQKG R +E +GGD DGD++FIS + L+ P + P YTG
Sbjct: 659 NSKYGVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEHYKPSEPWVSSSPRSKIYTG 718
Query: 866 RRSRIMDHDVTLEEIHKFFVD--YMINDTLGAISTAHLVHADR---------DPDKARSS 914
R+ + + EE+ K F+ + + +G + + L DR
Sbjct: 719 RQPSELSPEQLEEELFKIFLKTGFSPSSVIGQAADSWLAIMDRFLTLGDENVKEKAEMKK 778
Query: 915 KCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLY 969
K L L ++ A+D KTG +PL +K FP +MER + S +LG ++
Sbjct: 779 KMLKLTDIYYDAIDAPKTGTEVNLPLDVKVDLFPHYMERNKT--FKSTSILGLIF 831
>sp|Q5QMN4|RDR4_ORYSJ Probable RNA-dependent RNA polymerase 4 OS=Oryza sativa subsp.
japonica GN=RDR4 PE=2 SV=2
Length = 1183
Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 154/603 (25%), Positives = 237/603 (39%), Gaps = 134/603 (22%)
Query: 487 LRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQ--LFSSSKQTLVVPVQDV 544
+R S W +S + F IR+V A M + L S TL V + +V
Sbjct: 477 VRTESGWNMDEPYILSGRTIGQARDLFMHIRTVLTLAKYMLRFALIVSKTITLDVDLSEV 536
Query: 545 --EMIPD--------VEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHT--------- 585
++I D EV DG +DG G IS +AQKC S++
Sbjct: 537 LVKLIDDEPCLDEHGKEVFRDGERLIHTDGTGLIS----EDLAQKCTYSNSKGKLLEPQD 592
Query: 586 ------------------PSAFQIR--YGG--YKGVIAVD-RNSFRKLSLRRSMLKF--- 619
P Q+R Y G KG + VD R R + +R SMLK
Sbjct: 593 IVDCAASKLMGSNNTTEYPLLIQLRLFYNGSAVKGTVLVDKRLPPRTIHIRPSMLKIKTY 652
Query: 620 ---------------------------ESRNRMLNVTKWSESMPCFLNREIISLLSTLGV 652
+S N V+ + S F + +I+LL GV
Sbjct: 653 PELSGVQSVNSLDIVSARNAKKSLSGVQSVNSFEIVSTSNRSGRTFTSNNLIALLHYGGV 712
Query: 653 KDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNIL-VKMLLQGYEPNVEPYLS 711
+E F + Q + + AL++ N D ++ + +M+L G P E YL
Sbjct: 713 PEEFFMELLQTAIEEADNARFDYAGALNI--AFNYADMEDSMPARMILSGI-PLEESYLQ 769
Query: 712 MMLLSHHENQLSDLKSRC----RIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELES 767
L + LS L+ + +I + L+G D TG L +V V + +
Sbjct: 770 SRL-----DFLSLLERKGIKNGKIPIDDCYYLMGTADPTGKLGPNEVCVILDYGQ----- 819
Query: 768 KDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEE--KDYVDCIIFPQK 825
V G VLV K P LHPGD+ VL+A Y +E+ + I+FP
Sbjct: 820 ---------------VSGDVLVYKYPGLHPGDIHVLKATYSSDIEKVVGNSKHAILFPTT 864
Query: 826 GERPHPNECSGGDLDGDIFFISWDNDLI----PCET-EPPMDYTGRRSRIMD--HDVTLE 878
G+R +E + D DGDI+++S + L+ P + P + G + + + ++ LE
Sbjct: 865 GQRSLADEMANSDFDGDIYWVSLNPKLLEHFKPSKPWVPAITPNGTKQKGPEDFNESELE 924
Query: 879 EI--HKFF-VDYMINDTLGAISTAHLVHADR--------DPDKARSSKCLHLATLHSMAV 927
+ H+F + + +T LV+ DR K K L L L+ +A+
Sbjct: 925 RVLFHEFLKTRFAPSYARATAATNWLVYMDRLLTVSLDESEKKLIEKKMLKLVDLYYLAL 984
Query: 928 DFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSE 987
D K G +P L K++P FM+R P Y S +LGK+Y D +RS+ +
Sbjct: 985 DAPKMGNKVNIPRDLMVKQYPHFMDR--SPSYHSSSILGKIYDKAGDP-KPLRSDNVQPT 1041
Query: 988 KIA 990
I+
Sbjct: 1042 SIS 1044
>sp|Q5QMN5|RDR3_ORYSJ Probable RNA-dependent RNA polymerase 3 OS=Oryza sativa subsp.
japonica GN=RDR3 PE=2 SV=2
Length = 1153
Score = 77.0 bits (188), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 105/397 (26%), Positives = 170/397 (42%), Gaps = 54/397 (13%)
Query: 600 IAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEA 659
I RN+ + LS +S+ FE V+ + +R +I+LL GV +E F
Sbjct: 645 IVSARNAKKSLSGVQSVNSFEI------VSTSNRPRRTLTSRFLITLLCYGGVPEEYFLE 698
Query: 660 MQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHE 719
+ Q + + E AL + ++ ++ +M+L G P E YL L +
Sbjct: 699 LLQSAIEGAENACYDYEDALRIAFSYADMED-SMSARMILSGI-PLEESYLQHRLDFMAQ 756
Query: 720 NQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDK 779
+ +K + +I + + L+ D TG L +V V + +
Sbjct: 757 QERKGIK-QGKIPIDECYYLMDTTDPTGTLRPNEVCVIL--------------------E 795
Query: 780 TSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVD----CIIFPQKGERPHPNECS 835
G VLV K+P LH GD+ VL+A Y L EK+YV I+FP G R +E +
Sbjct: 796 NGQFSGDVLVYKHPGLHFGDIHVLKATYIRDL-EKEYVGYAKYAILFPISGPRSLADEMA 854
Query: 836 GGDLDGDIFFISWDNDLI----PCE--TEPPMDYTGRRSRIMD-HDVTLEEI--HKFF-V 885
D DGDI+++S + L+ P E + ++ + D ++ LE + H+F
Sbjct: 855 NSDFDGDIYWVSKNPKLLEHFKPSEPWVQAIKPKKTKQKKPQDCNESKLERLLFHEFLKT 914
Query: 886 DYMINDTLGAISTAHLVHADR--------DPDKARSSKCLHLATLHSMAVDFAKTGAPAE 937
+ + LG + + L + DR K K L L L+ +A+D KTG
Sbjct: 915 RFTPSFALGTAADSWLAYMDRLLTDSLDEIEKKLIEEKMLKLVDLYYLALDAPKTGNKVN 974
Query: 938 MPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLD 974
+P L K++P FM R Y S +LG++Y D
Sbjct: 975 IPSDLMVKQYPHFMGRSFS--YHSSSILGQIYDKAED 1009
>sp|Q4WF53|NRPS4_ASPFU Nonribosomal peptide synthetase 4 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=NRPS4
PE=2 SV=1
Length = 2083
Score = 38.1 bits (87), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 12/102 (11%)
Query: 17 AKDLLLFLESKLGKNSV---FALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKL 73
A DLL F++++ +++ E I + W S GR F S+ ++ D +
Sbjct: 1952 ASDLLNFVQTQSAESAAHDFLGFEKIAKLAGWAS---GRQGFDSIVHHQDWEDF---DMM 2005
Query: 74 VFN--SQNLKISETHSDIVPRPVKAQHRVEDGVLHVGVMCKE 113
F S + I+ H D PVKA V++G +HVGV+C E
Sbjct: 2006 PFGGGSCRVDIANPHGDAA-YPVKAVSFVKEGEIHVGVVCSE 2046
>sp|O28208|ARGC_ARCFU N-acetyl-gamma-glutamyl-phosphate reductase OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=argC PE=3 SV=1
Length = 332
Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 747 GILNYGQVFVRVTMTREEL-----ESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVR 801
GIL VF+R +TREEL E + SFF R+ + S+ + + + +HPG+ R
Sbjct: 232 GILTNAHVFLRGELTREELYRIYEEFYEDSFFVRIQESVSLSQVRGSNFCDISIHPGEDR 291
Query: 802 VL 803
V+
Sbjct: 292 VV 293
>sp|Q31B49|URE1_PROM9 Urease subunit alpha OS=Prochlorococcus marinus (strain MIT 9312)
GN=ureC PE=3 SV=1
Length = 569
Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 9/86 (10%)
Query: 451 SKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWM 510
++PY T L +L + K E +AF+ S++R ++ +AED+ M
Sbjct: 303 TRPYTTNTLEEHLDMLMVCHHLDSKIPEDIAFAESRIRRETI---------AAEDILHDM 353
Query: 511 GCFNKIRSVSKCAARMGQLFSSSKQT 536
G F+ I S S+ R+G++ + + QT
Sbjct: 354 GAFSIIASDSQAMGRVGEVITRTFQT 379
>sp|A5CVL9|SYS_VESOH Serine--tRNA ligase OS=Vesicomyosocius okutanii subsp. Calyptogena
okutanii (strain HA) GN=serS PE=3 SV=1
Length = 429
Score = 34.3 bits (77), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 19 DLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLS-LNDKLVFNS 77
D L+ LES KN + + + + N +S+ IG+ + + D KS +N+S L+ KL
Sbjct: 28 DHLIELESNRKKNQI-ETQNLQNLRNMQSKAIGKAKASGEDIKSLLKNVSDLSTKLNLAK 86
Query: 78 QNLKISETHSDIV--PRPVKAQHRVEDG 103
NL++ ++ D++ P H V +G
Sbjct: 87 SNLQLIQSEIDVIVLSMPNIPHHSVPNG 114
>sp|Q9Y4D8|HECD4_HUMAN Probable E3 ubiquitin-protein ligase HECTD4 OS=Homo sapiens
GN=HECTD4 PE=1 SV=5
Length = 3996
Score = 33.5 bits (75), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 49/235 (20%), Positives = 88/235 (37%), Gaps = 35/235 (14%)
Query: 654 DEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQG-YEPNVE----- 707
DEV E +QQ L+ + +RE L L+++ L+ +LL PN++
Sbjct: 502 DEVLEMLQQVTTALINSDIADREQRLKGLEQVTKATMLGHLLPVLLTSLMHPNLQTLIMA 561
Query: 708 ----PYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTRE 763
P L ++L + L LK++C ++ G G D+ R+
Sbjct: 562 DALMPQLVQLVLYTSQTALL-LKTQCPVFAEVGCSPCGAPDQK---------CRLFPDER 611
Query: 764 ELESKDQ-SFFHRVDDKTSIVKGKVLVTKNP---------CLHPGDVRVLEAVYEMKLEE 813
LE K++ F + GK + T +P +H R L ++ +
Sbjct: 612 MLEEKEEPGFLTGLKIPAPWAAGKTVETVHPVRDNYKFKETVHIPGARCLYLRFDSRCSS 671
Query: 814 K-DYVDCIIFPQKGERPHPNECSGGDLDG----DIFFISWDNDLIPCETEPPMDY 863
+ DY +I+ GG+ G + W DL+ C + P +++
Sbjct: 672 QYDYDKLVIYAGPNTNSRKVAEYGGNTLGYGSRSVLGTGWPKDLVKCISPPSLNF 726
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 412,038,939
Number of Sequences: 539616
Number of extensions: 17369251
Number of successful extensions: 38814
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 38700
Number of HSP's gapped (non-prelim): 43
length of query: 1131
length of database: 191,569,459
effective HSP length: 128
effective length of query: 1003
effective length of database: 122,498,611
effective search space: 122866106833
effective search space used: 122866106833
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)