Query 001183
Match_columns 1131
No_of_seqs 406 out of 647
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 15:17:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001183.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001183hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j7n_A RNA-dependent RNA polym 100.0 8E-122 3E-126 1143.3 27.4 537 397-967 131-776 (1022)
2 4fxv_A ELAV-like protein 1; RN 99.7 6.6E-17 2.3E-21 152.1 10.7 80 3-87 19-98 (99)
3 2lxi_A RNA-binding protein 10; 99.7 7.6E-17 2.6E-21 149.2 6.7 82 3-88 1-83 (91)
4 3p5t_L Cleavage and polyadenyl 99.6 1.4E-16 4.8E-21 146.5 6.8 83 4-91 2-86 (90)
5 3s8s_A Histone-lysine N-methyl 99.6 1.5E-15 5.1E-20 145.7 10.8 81 3-88 6-86 (110)
6 3md1_A Nuclear and cytoplasmic 99.6 2.8E-15 9.7E-20 134.8 10.8 81 3-88 1-81 (83)
7 2lkz_A RNA-binding protein 5; 99.6 6.7E-16 2.3E-20 144.6 6.5 84 3-87 9-94 (95)
8 3bs9_A Nucleolysin TIA-1 isofo 99.6 3.1E-15 1.1E-19 135.7 10.5 81 3-88 6-86 (87)
9 4f25_A Polyadenylate-binding p 99.6 2.7E-15 9.2E-20 144.5 10.6 80 3-89 5-84 (115)
10 2j8a_A Histone-lysine N-methyl 99.6 1.3E-15 4.5E-20 149.0 8.2 83 2-89 1-97 (136)
11 3ns6_A Eukaryotic translation 99.6 1.5E-15 5.1E-20 142.7 8.0 81 2-87 5-92 (100)
12 1whw_A Hypothetical protein ri 99.6 7.3E-15 2.5E-19 136.8 11.7 84 3-91 8-91 (99)
13 2x1f_A MRNA 3'-END-processing 99.6 5.9E-15 2E-19 137.0 10.5 83 3-90 2-84 (96)
14 3ucg_A Polyadenylate-binding p 99.6 7.4E-15 2.5E-19 133.8 10.5 80 3-88 6-85 (89)
15 2dnz_A Probable RNA-binding pr 99.6 1.4E-14 4.7E-19 133.8 11.9 84 3-91 5-88 (95)
16 2la6_A RNA-binding protein FUS 99.6 6.2E-15 2.1E-19 137.6 9.6 79 3-86 13-99 (99)
17 3mdf_A Peptidyl-prolyl CIS-tra 99.6 7.6E-15 2.6E-19 132.6 9.7 79 3-86 7-85 (85)
18 2cq0_A Eukaryotic translation 99.6 7.5E-15 2.6E-19 137.9 9.9 86 3-93 15-100 (103)
19 1s79_A Lupus LA protein; RRM, 99.6 5.9E-15 2E-19 140.0 9.0 79 2-87 10-88 (103)
20 3s7r_A Heterogeneous nuclear r 99.6 1.1E-14 3.6E-19 132.5 10.1 77 3-85 11-87 (87)
21 3n9u_C Cleavage and polyadenyl 99.6 9.7E-15 3.3E-19 148.7 10.6 80 4-88 56-137 (156)
22 2cqb_A Peptidyl-prolyl CIS-tra 99.5 7.7E-15 2.6E-19 137.4 9.0 85 3-92 12-96 (102)
23 2cpf_A RNA binding motif prote 99.5 1.2E-14 4.2E-19 135.1 10.3 86 3-93 5-93 (98)
24 2dgs_A DAZ-associated protein 99.5 2E-14 6.9E-19 134.0 11.6 82 3-90 10-91 (99)
25 2cpz_A CUG triplet repeat RNA- 99.5 1.3E-14 4.4E-19 139.1 10.5 86 3-93 25-110 (115)
26 2cqc_A Arginine/serine-rich sp 99.5 1.6E-14 5.6E-19 133.1 10.8 80 3-87 15-94 (95)
27 2div_A TRNA selenocysteine ass 99.5 1.1E-14 3.8E-19 135.6 9.7 83 2-89 8-95 (99)
28 1p27_B RNA-binding protein 8A; 99.5 1.3E-14 4.4E-19 136.8 10.2 81 3-88 23-103 (106)
29 1x5t_A Splicing factor 3B subu 99.5 1E-14 3.4E-19 135.0 9.2 83 3-90 5-88 (96)
30 2cqd_A RNA-binding region cont 99.5 1.7E-14 6E-19 138.4 11.2 88 3-96 17-104 (116)
31 2dgo_A Cytotoxic granule-assoc 99.5 2.5E-14 8.5E-19 137.0 12.1 83 3-90 15-97 (115)
32 2dnm_A SRP46 splicing factor; 99.5 1.4E-14 4.6E-19 136.1 10.0 82 3-89 13-94 (103)
33 1x5u_A Splicing factor 3B subu 99.5 1.9E-14 6.6E-19 135.4 10.9 83 3-90 15-97 (105)
34 1sjq_A Polypyrimidine tract-bi 99.5 1.5E-14 5E-19 138.0 10.1 80 3-91 16-95 (105)
35 2mss_A Protein (musashi1); RNA 99.5 6E-15 2.1E-19 130.4 6.9 75 5-85 1-75 (75)
36 2dgx_A KIAA0430 protein; RRM d 99.5 2.4E-14 8.4E-19 133.2 11.1 81 3-91 9-93 (96)
37 1oo0_B CG8781-PA, drosophila Y 99.5 1.6E-14 5.5E-19 137.3 10.0 82 3-89 26-107 (110)
38 1uaw_A Mouse-musashi-1; RNP-ty 99.5 6.5E-15 2.2E-19 130.6 6.7 76 4-85 1-76 (77)
39 2ki2_A SS-DNA binding protein 99.5 4.2E-15 1.4E-19 136.1 5.4 81 4-90 2-82 (90)
40 2jrs_A RNA-binding protein 39; 99.5 1.8E-14 6.3E-19 137.4 10.1 80 3-87 26-105 (108)
41 4a8x_A RNA-binding protein wit 99.5 1.4E-14 4.8E-19 131.5 8.9 80 3-87 4-84 (88)
42 1x5s_A Cold-inducible RNA-bind 99.5 1.5E-14 5.1E-19 135.4 9.2 84 3-91 12-95 (102)
43 1x4h_A RNA-binding protein 28; 99.5 2.8E-14 9.5E-19 135.5 11.2 84 3-89 15-102 (111)
44 2e5h_A Zinc finger CCHC-type a 99.5 1.9E-14 6.6E-19 132.5 9.7 79 3-86 16-94 (94)
45 2krb_A Eukaryotic translation 99.5 9.5E-15 3.3E-19 131.5 7.4 74 3-83 1-81 (81)
46 2kt5_A RNA and export factor-b 99.5 2.6E-14 8.8E-19 139.0 10.9 87 3-95 35-121 (124)
47 2dis_A Unnamed protein product 99.5 2.6E-14 9E-19 135.4 10.5 86 3-91 8-95 (109)
48 2do4_A Squamous cell carcinoma 99.5 2.8E-14 9.6E-19 133.2 10.6 80 3-88 17-96 (100)
49 2dnh_A Bruno-like 5, RNA bindi 99.5 3.2E-14 1.1E-18 133.9 10.9 85 3-93 15-102 (105)
50 1p1t_A Cleavage stimulation fa 99.5 1.3E-14 4.5E-19 136.1 8.2 82 3-89 8-89 (104)
51 2dhg_A TRNA selenocysteine ass 99.5 2.8E-14 9.7E-19 134.0 10.5 82 3-90 9-92 (104)
52 1x4e_A RNA binding motif, sing 99.5 9E-15 3.1E-19 132.4 6.3 78 3-85 5-82 (85)
53 2dng_A Eukaryotic translation 99.5 4.1E-14 1.4E-18 133.0 11.0 81 3-90 15-95 (103)
54 2rs2_A Musashi-1, RNA-binding 99.5 3E-14 1E-18 136.0 10.1 81 3-89 25-105 (109)
55 2nlw_A Eukaryotic translation 99.5 2.3E-14 7.9E-19 135.6 9.1 79 2-87 14-99 (105)
56 2dgp_A Bruno-like 4, RNA bindi 99.5 2.2E-14 7.6E-19 135.2 9.0 82 3-89 13-97 (106)
57 2cph_A RNA binding motif prote 99.5 4.4E-14 1.5E-18 133.2 10.9 84 3-90 15-99 (107)
58 2dh8_A DAZ-associated protein 99.5 2.9E-14 1E-18 134.3 9.6 82 3-90 16-97 (105)
59 2wbr_A GW182, gawky, LD47780P; 99.5 3.5E-14 1.2E-18 130.7 9.6 75 2-87 6-80 (89)
60 2cpe_A RNA-binding protein EWS 99.5 3.4E-14 1.2E-18 135.6 10.0 83 3-90 15-105 (113)
61 2fy1_A RNA-binding motif prote 99.5 4.1E-14 1.4E-18 136.6 10.5 82 3-90 7-88 (116)
62 2khc_A Testis-specific RNP-typ 99.5 2.8E-14 9.6E-19 137.2 9.1 79 3-86 40-118 (118)
63 1u6f_A Tcubp1, RNA-binding pro 99.5 5.6E-14 1.9E-18 139.0 11.1 83 3-90 42-124 (139)
64 2ek1_A RNA-binding protein 12; 99.5 1.6E-14 5.3E-19 133.4 6.6 79 3-86 15-93 (95)
65 2ywk_A Putative RNA-binding pr 99.5 6.9E-14 2.4E-18 129.1 10.9 79 3-87 16-94 (95)
66 1wi8_A EIF-4B, eukaryotic tran 99.5 4.5E-14 1.5E-18 132.9 9.8 80 3-89 15-95 (104)
67 1iqt_A AUF1, heterogeneous nuc 99.5 1.3E-14 4.3E-19 128.2 5.6 75 5-85 1-75 (75)
68 2cq4_A RNA binding motif prote 99.5 3.4E-14 1.2E-18 135.9 9.1 80 3-88 25-104 (114)
69 2j76_E EIF-4B, EIF4B, eukaryot 99.5 1.8E-14 6.1E-19 135.1 6.9 78 3-87 19-97 (100)
70 2d9p_A Polyadenylate-binding p 99.5 5E-14 1.7E-18 132.2 9.8 81 3-90 15-95 (103)
71 2jwn_A Embryonic polyadenylate 99.5 4.9E-14 1.7E-18 136.7 9.8 81 3-89 36-116 (124)
72 3ex7_B RNA-binding protein 8A; 99.5 5E-14 1.7E-18 137.1 9.8 83 3-90 22-104 (126)
73 2cqp_A RNA-binding protein 12; 99.5 1.8E-14 6.2E-19 133.9 6.3 80 3-87 15-94 (98)
74 1wez_A HnRNP H', FTP-3, hetero 99.5 2.5E-14 8.4E-19 135.3 7.2 81 2-90 14-94 (102)
75 2m2b_A RNA-binding protein 10; 99.5 1.5E-14 5E-19 142.4 5.8 80 3-88 23-108 (131)
76 2cqi_A Nucleolysin TIAR; RNA r 99.5 1.4E-13 4.7E-18 129.2 12.1 84 3-93 15-98 (103)
77 2dgv_A HnRNP M, heterogeneous 99.5 8E-14 2.7E-18 127.9 10.1 81 3-90 8-88 (92)
78 2kn4_A Immunoglobulin G-bindin 99.5 7E-14 2.4E-18 141.1 10.7 82 3-89 70-151 (158)
79 2kxn_B Transformer-2 protein h 99.5 4.9E-14 1.7E-18 138.8 9.0 81 3-88 46-126 (129)
80 3ulh_A THO complex subunit 4; 99.5 8.2E-14 2.8E-18 131.5 10.2 78 3-86 29-106 (107)
81 1x4b_A Heterogeneous nuclear r 99.5 8E-14 2.7E-18 133.8 10.1 82 3-90 27-108 (116)
82 1wg5_A Heterogeneous nuclear r 99.5 6.6E-14 2.2E-18 132.3 9.0 81 3-90 15-96 (104)
83 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 8.7E-14 3E-18 137.2 9.9 78 3-85 63-140 (140)
84 2do0_A HnRNP M, heterogeneous 99.5 1.7E-13 5.7E-18 130.9 11.5 81 3-89 15-95 (114)
85 2cpy_A RNA-binding protein 12; 99.5 3.4E-14 1.2E-18 136.5 6.7 80 3-89 15-95 (114)
86 2dnn_A RNA-binding protein 12; 99.5 7.2E-14 2.5E-18 134.0 8.9 77 4-88 17-93 (109)
87 2cqg_A TDP-43, TAR DNA-binding 99.5 1.6E-13 5.5E-18 128.8 10.9 81 3-90 15-95 (103)
88 2dgw_A Probable RNA-binding pr 99.5 9.9E-14 3.4E-18 127.3 9.2 78 3-88 10-87 (91)
89 2cpi_A CCR4-NOT transcription 99.5 8.5E-14 2.9E-18 133.1 8.6 82 3-89 15-102 (111)
90 2jvr_A Nucleolar protein 3; RN 99.5 7.9E-14 2.7E-18 134.2 8.4 77 4-89 29-106 (111)
91 2hgl_A HNRPF protein, heteroge 99.5 4.2E-14 1.4E-18 140.9 6.6 78 3-87 44-124 (136)
92 3r27_A HnRNP L, heterogeneous 99.5 1.9E-13 6.4E-18 129.2 10.5 77 3-88 21-97 (100)
93 2cq1_A PTB-like protein L; RRM 99.5 1.1E-13 3.9E-18 130.8 9.0 80 3-91 15-94 (101)
94 2cq3_A RNA-binding protein 9; 99.5 3E-13 1E-17 126.9 11.8 81 3-90 15-95 (103)
95 2lea_A Serine/arginine-rich sp 99.5 7.3E-14 2.5E-18 138.6 8.0 83 3-90 47-129 (135)
96 2db1_A Heterogeneous nuclear r 99.5 5.5E-14 1.9E-18 136.1 6.8 80 3-89 17-99 (118)
97 3q2s_C Cleavage and polyadenyl 99.5 9.9E-14 3.4E-18 149.7 9.5 81 4-89 69-151 (229)
98 2ad9_A Polypyrimidine tract-bi 99.5 1.1E-13 3.6E-18 135.0 8.6 80 3-91 31-110 (119)
99 2err_A Ataxin-2-binding protei 99.5 1.1E-13 3.7E-18 132.0 8.5 80 3-89 29-108 (109)
100 1h2v_Z 20 kDa nuclear CAP bind 99.4 2.3E-13 8E-18 137.4 11.4 82 3-89 39-120 (156)
101 2lmi_A GRSF-1, G-rich sequence 99.4 3.7E-14 1.2E-18 134.7 5.0 79 3-88 11-92 (107)
102 1wex_A Hypothetical protein (r 99.4 2.1E-13 7.2E-18 129.6 10.0 82 3-93 15-96 (104)
103 1fj7_A Nucleolin RBD1, protein 99.4 3.7E-14 1.3E-18 132.7 4.1 79 3-88 17-95 (101)
104 1x4a_A Splicing factor, argini 99.4 5.4E-13 1.8E-17 126.6 11.9 80 3-90 22-101 (109)
105 1x4d_A Matrin 3; structural ge 99.4 1.2E-13 4.3E-18 130.9 7.4 78 3-89 15-93 (102)
106 1rk8_A CG8781-PA, CG8781-PA pr 99.4 2.8E-13 9.6E-18 138.5 10.2 83 3-90 72-154 (165)
107 2xs2_A Deleted in azoospermia- 99.4 1.5E-13 5E-18 128.8 7.4 79 2-88 8-86 (102)
108 2fc9_A NCL protein; structure 99.4 3.6E-13 1.2E-17 125.9 9.7 80 3-91 15-94 (101)
109 1wel_A RNA-binding protein 12; 99.4 5.6E-14 1.9E-18 136.9 4.3 79 3-87 25-103 (124)
110 2hgm_A HNRPF protein, heteroge 99.4 1.4E-13 4.9E-18 135.4 7.1 78 3-87 42-120 (126)
111 2dha_A FLJ20171 protein; RRM d 99.4 1E-13 3.5E-18 135.8 6.0 80 3-87 23-104 (123)
112 1x4f_A Matrin 3; structural ge 99.4 1.1E-13 3.8E-18 133.4 5.9 78 3-89 25-103 (112)
113 4f02_A Polyadenylate-binding p 99.4 4.8E-13 1.7E-17 141.8 11.2 82 3-89 15-96 (213)
114 1x5o_A RNA binding motif, sing 99.4 4.4E-13 1.5E-17 128.1 9.5 79 3-87 25-111 (114)
115 2a3j_A U1 small nuclear ribonu 99.4 6.1E-13 2.1E-17 131.0 10.1 79 3-89 29-111 (127)
116 2fc8_A NCL protein; structure 99.4 5.4E-13 1.8E-17 124.8 9.1 80 3-90 15-94 (102)
117 2cpx_A Hypothetical protein FL 99.4 1.6E-13 5.6E-18 131.1 5.5 83 3-90 25-107 (115)
118 1nu4_A U1A RNA binding domain; 99.4 3.2E-13 1.1E-17 125.1 7.2 79 3-89 8-90 (97)
119 2qfj_A FBP-interacting repress 99.4 9E-13 3.1E-17 138.3 11.5 86 3-93 125-210 (216)
120 1fxl_A Paraneoplastic encephal 99.4 1.1E-12 3.9E-17 131.3 11.0 82 3-89 2-83 (167)
121 2hgn_A Heterogeneous nuclear r 99.4 1.4E-13 4.9E-18 137.6 4.4 80 3-90 46-125 (139)
122 2e5j_A Methenyltetrahydrofolat 99.4 6.2E-13 2.1E-17 123.6 8.4 77 2-88 18-94 (97)
123 2la4_A Nuclear and cytoplasmic 99.4 7.7E-13 2.6E-17 123.7 8.8 74 3-87 27-100 (101)
124 2lcw_A RNA-binding protein FUS 99.1 4E-14 1.4E-18 136.1 0.0 82 3-89 7-96 (116)
125 1b7f_A Protein (SXL-lethal pro 99.4 1.1E-12 3.8E-17 131.9 10.5 96 3-111 3-98 (168)
126 2hvz_A Splicing factor, argini 99.4 7.8E-13 2.7E-17 123.6 8.7 77 4-90 1-77 (101)
127 2dnl_A Cytoplasmic polyadenyla 99.4 3.3E-13 1.1E-17 129.6 6.3 77 2-86 7-86 (114)
128 2dnq_A RNA-binding protein 4B; 99.4 2.1E-12 7.1E-17 118.3 11.1 75 3-90 8-82 (90)
129 1fjc_A Nucleolin RBD2, protein 99.4 5.9E-13 2E-17 123.2 7.5 77 3-89 16-92 (96)
130 1x4g_A Nucleolysin TIAR; struc 99.4 2.1E-12 7E-17 122.7 11.4 79 3-92 25-103 (109)
131 1x4c_A Splicing factor, argini 99.4 2.5E-12 8.7E-17 122.1 11.3 76 3-90 15-95 (108)
132 1l3k_A Heterogeneous nuclear r 99.4 2.4E-12 8.1E-17 133.0 12.1 99 3-110 13-112 (196)
133 3md3_A Nuclear and cytoplasmic 99.4 1.7E-12 5.9E-17 129.9 10.7 80 3-87 87-166 (166)
134 2e5g_A U6 snRNA-specific termi 99.4 2.1E-12 7.3E-17 119.3 10.4 77 3-90 8-84 (94)
135 2g4b_A Splicing factor U2AF 65 99.4 1.3E-12 4.5E-17 132.1 9.7 78 3-85 94-171 (172)
136 2cpd_A Apobec-1 stimulating pr 99.4 3.1E-12 1.1E-16 119.2 11.5 77 3-90 15-91 (99)
137 2xnq_A Nuclear polyadenylated 99.4 2.4E-12 8.1E-17 120.2 10.7 74 2-88 21-95 (97)
138 3lqv_A PRE-mRNA branch site pr 99.4 2.1E-12 7E-17 123.6 10.5 79 2-88 7-85 (115)
139 2f3j_A RNA and export factor b 99.4 9.9E-13 3.4E-17 136.5 8.7 82 3-90 88-169 (177)
140 1wg1_A KIAA1579 protein, homol 99.4 9.3E-13 3.2E-17 120.4 7.5 76 3-90 5-80 (88)
141 1whx_A Hypothetical protein ri 99.3 1.6E-12 5.6E-17 124.4 9.1 78 4-92 11-88 (111)
142 1why_A Hypothetical protein ri 99.3 2.3E-12 7.9E-17 119.6 9.8 75 3-88 17-93 (97)
143 3md3_A Nuclear and cytoplasmic 99.3 3.6E-12 1.2E-16 127.6 11.7 80 4-89 1-80 (166)
144 2ytc_A PRE-mRNA-splicing facto 99.3 2.3E-12 7.7E-17 116.4 9.2 74 3-86 12-85 (85)
145 2cjk_A Nuclear polyadenylated 99.3 9.6E-13 3.3E-17 132.5 7.4 79 3-87 87-165 (167)
146 3d2w_A TAR DNA-binding protein 99.3 1.9E-12 6.3E-17 119.3 8.7 73 3-87 11-83 (89)
147 1wf1_A RNA-binding protein RAL 99.3 2.3E-12 7.8E-17 122.6 9.2 78 2-92 26-104 (110)
148 2dgt_A RNA-binding protein 30; 99.3 4.2E-12 1.4E-16 116.8 10.7 75 3-90 10-84 (92)
149 2dnp_A RNA-binding protein 14; 99.3 4.2E-12 1.4E-16 116.3 10.3 75 3-90 9-83 (90)
150 2kvi_A Nuclear polyadenylated 99.3 1.8E-12 6.1E-17 120.4 7.9 76 3-91 10-86 (96)
151 2cqh_A IGF-II mRNA-binding pro 99.3 1.7E-12 5.7E-17 119.6 7.4 76 3-90 8-85 (93)
152 2jvo_A Nucleolar protein 3; nu 99.3 3E-12 1E-16 122.1 9.4 75 3-90 31-105 (108)
153 2yh0_A Splicing factor U2AF 65 99.3 3.6E-12 1.2E-16 131.9 10.4 81 3-88 114-194 (198)
154 3egn_A RNA-binding protein 40; 99.3 5.3E-13 1.8E-17 132.9 3.8 81 3-88 45-130 (143)
155 2cq2_A Hypothetical protein LO 99.3 2.7E-12 9.4E-17 124.0 8.4 80 3-93 25-111 (114)
156 1l3k_A Heterogeneous nuclear r 99.3 4E-12 1.4E-16 131.3 10.1 80 4-89 105-184 (196)
157 2dgu_A Heterogeneous nuclear r 99.3 7.2E-12 2.5E-16 117.7 10.8 75 3-90 11-85 (103)
158 2qfj_A FBP-interacting repress 99.3 4.3E-12 1.5E-16 133.1 10.2 81 3-88 28-108 (216)
159 2i2y_A Fusion protein consists 99.3 3.6E-12 1.2E-16 127.9 9.2 76 3-88 73-148 (150)
160 2cjk_A Nuclear polyadenylated 99.3 3.2E-12 1.1E-16 128.7 8.7 78 3-87 3-80 (167)
161 2cpj_A Non-POU domain-containi 99.3 3.6E-12 1.2E-16 118.8 7.9 76 3-89 15-90 (99)
162 2e44_A Insulin-like growth fac 99.3 5.5E-12 1.9E-16 116.6 8.8 77 3-88 15-92 (96)
163 4f02_A Polyadenylate-binding p 99.3 5.8E-12 2E-16 133.5 10.2 78 4-88 104-181 (213)
164 2pe8_A Splicing factor 45; RRM 99.3 1E-11 3.4E-16 118.3 10.4 83 2-89 7-95 (105)
165 2voo_A Lupus LA protein; RNA-b 99.3 7.4E-12 2.5E-16 131.6 10.1 78 3-87 109-186 (193)
166 3pgw_S U1-70K; protein-RNA com 99.3 6.3E-12 2.2E-16 147.8 10.5 82 4-90 103-184 (437)
167 1x5p_A Negative elongation fac 99.3 1.8E-11 6.2E-16 113.7 11.3 75 3-90 15-89 (97)
168 2hzc_A Splicing factor U2AF 65 99.3 1E-11 3.5E-16 112.4 8.8 73 3-84 6-86 (87)
169 1b7f_A Protein (SXL-lethal pro 99.3 1.2E-11 4.1E-16 124.4 10.0 78 3-85 89-168 (168)
170 3nmr_A Cugbp ELAV-like family 99.2 1.3E-11 4.6E-16 124.6 9.9 96 3-110 3-103 (175)
171 3beg_B Splicing factor, argini 99.2 1.1E-11 3.8E-16 119.3 8.5 74 4-89 17-95 (115)
172 1sjr_A Polypyrimidine tract-bi 99.2 1.6E-11 5.5E-16 125.7 10.1 77 4-89 47-125 (164)
173 1wf0_A TDP-43, TAR DNA-binding 99.2 9.1E-12 3.1E-16 113.5 7.1 77 2-90 4-80 (88)
174 3tyt_A Heterogeneous nuclear r 99.2 1.6E-11 5.4E-16 130.2 9.9 78 3-90 4-82 (205)
175 1fxl_A Paraneoplastic encephal 99.2 2.1E-11 7.1E-16 122.1 10.3 77 3-84 88-166 (167)
176 3nmr_A Cugbp ELAV-like family 99.2 2.3E-11 8E-16 122.9 10.3 78 3-86 95-175 (175)
177 2diu_A KIAA0430 protein; struc 99.2 2.5E-11 8.7E-16 112.8 9.2 71 5-89 11-85 (96)
178 3zzy_A Polypyrimidine tract-bi 99.2 3.9E-11 1.3E-15 118.6 10.4 77 4-90 29-108 (130)
179 2e5i_A Heterogeneous nuclear r 99.2 4.8E-11 1.6E-15 117.0 10.8 75 5-90 27-104 (124)
180 1fje_B Nucleolin RBD12, protei 99.2 3.4E-11 1.2E-15 122.4 9.5 76 3-88 99-174 (175)
181 3smz_A Protein raver-1, ribonu 99.2 6.8E-11 2.3E-15 129.9 11.8 99 3-111 95-193 (284)
182 1fje_B Nucleolin RBD12, protei 99.2 1.4E-11 4.9E-16 125.2 5.8 95 3-110 13-107 (175)
183 2bz2_A Negative elongation fac 99.2 5.5E-11 1.9E-15 115.8 8.5 76 2-90 38-113 (121)
184 2yh0_A Splicing factor U2AF 65 99.1 2.4E-11 8.2E-16 125.6 6.2 82 2-89 3-89 (198)
185 1jmt_A Splicing factor U2AF 35 99.1 2.1E-11 7.3E-16 115.7 5.0 74 7-86 19-104 (104)
186 2ghp_A U4/U6 snRNA-associated 99.1 5.6E-11 1.9E-15 131.2 9.2 80 3-88 210-291 (292)
187 3sde_A Paraspeckle component 1 99.1 1.1E-10 3.7E-15 127.6 9.7 81 3-88 96-179 (261)
188 3pgw_A U1-A; protein-RNA compl 99.1 1.2E-10 4.2E-15 127.7 9.8 79 3-89 9-91 (282)
189 2g4b_A Splicing factor U2AF 65 99.1 4.2E-11 1.4E-15 121.1 5.1 76 3-88 4-88 (172)
190 2adc_A Polypyrimidine tract-bi 99.1 2.2E-10 7.6E-15 122.7 10.8 78 3-90 34-112 (229)
191 1qm9_A Polypyrimidine tract-bi 99.1 1.2E-10 4.1E-15 121.1 8.4 78 3-90 3-81 (198)
192 3smz_A Protein raver-1, ribonu 99.1 1.1E-10 3.9E-15 128.2 8.7 82 3-90 184-266 (284)
193 3u1l_A PRE-mRNA-splicing facto 99.1 1.5E-10 5E-15 125.7 9.1 77 3-90 134-231 (240)
194 3tyt_A Heterogeneous nuclear r 99.0 1.9E-10 6.5E-15 121.9 7.3 70 3-79 123-194 (205)
195 2ghp_A U4/U6 snRNA-associated 99.0 4.1E-10 1.4E-14 124.2 10.3 101 3-111 117-219 (292)
196 3sde_A Paraspeckle component 1 99.0 4.2E-10 1.4E-14 123.0 9.7 74 3-87 22-95 (261)
197 3v4m_A Splicing factor U2AF 65 99.0 5.6E-10 1.9E-14 106.2 8.9 83 2-89 4-98 (105)
198 3ue2_A Poly(U)-binding-splicin 99.0 4.6E-10 1.6E-14 109.1 8.3 81 3-88 20-109 (118)
199 1qm9_A Polypyrimidine tract-bi 99.0 6.2E-10 2.1E-14 115.6 7.9 77 3-89 120-198 (198)
200 3pgw_A U1-A; protein-RNA compl 99.0 1.1E-09 3.7E-14 120.3 10.0 74 3-86 207-281 (282)
201 2adc_A Polypyrimidine tract-bi 99.0 1.2E-09 4.1E-14 116.9 10.0 77 3-89 151-229 (229)
202 2dit_A HIV TAT specific factor 99.0 1.3E-09 4.5E-14 104.1 8.9 77 3-88 15-102 (112)
203 3tht_A Alkylated DNA repair pr 98.9 1.9E-09 6.6E-14 122.7 8.7 74 3-87 18-98 (345)
204 2d9o_A DNAJ (HSP40) homolog, s 98.8 1.1E-08 3.7E-13 96.6 9.0 65 13-89 27-91 (100)
205 3s6e_A RNA-binding protein 39; 98.6 3.8E-08 1.3E-12 95.1 6.1 78 3-89 7-94 (114)
206 3dxb_A Thioredoxin N-terminall 98.5 1.2E-07 4E-12 101.0 8.2 70 15-89 141-214 (222)
207 1owx_A Lupus LA protein, SS-B, 98.5 2E-07 6.9E-12 90.8 7.5 74 3-85 18-93 (121)
208 2dnr_A Synaptojanin-1; RRM dom 98.5 3.1E-07 1.1E-11 84.8 8.0 73 4-90 8-88 (91)
209 1ufw_A Synaptojanin 2; RNP dom 98.1 2E-06 6.7E-11 79.9 5.6 69 4-86 16-93 (95)
210 2dhx_A Poly (ADP-ribose) polym 97.1 0.0022 7.6E-08 60.3 9.4 75 2-87 7-83 (104)
211 2l9w_A U4/U6 snRNA-associated- 97.0 0.0018 6.3E-08 61.5 8.1 74 3-84 21-96 (117)
212 2kn4_A Immunoglobulin G-bindin 94.5 0.051 1.7E-06 54.0 6.6 33 35-69 2-34 (158)
213 2i2y_A Fusion protein consists 90.4 0.24 8.2E-06 48.8 4.9 64 45-110 10-81 (150)
214 1wwh_A Nucleoporin 35, nucleop 82.4 4.5 0.00015 39.1 8.6 68 4-84 25-93 (119)
215 1wey_A Calcipressin 1; structu 82.3 5.5 0.00019 37.6 8.9 76 3-89 5-85 (104)
216 3pq1_A Poly(A) RNA polymerase; 81.0 0.7 2.4E-05 54.5 2.9 55 4-67 54-108 (464)
217 3ctr_A Poly(A)-specific ribonu 76.6 2.4 8.4E-05 39.6 4.5 52 6-69 9-60 (101)
218 1whv_A Poly(A)-specific ribonu 73.4 2.6 9E-05 39.3 3.9 52 6-69 19-70 (100)
219 1uw4_A UPF3X; nonsense mediate 51.9 58 0.002 29.8 8.5 67 4-75 2-70 (91)
220 3lu0_D DNA-directed RNA polyme 46.1 11 0.00037 49.5 3.6 52 783-848 416-470 (1407)
221 1b64_A Elongation factor 1-bet 41.4 25 0.00085 32.3 4.3 58 455-515 21-78 (91)
222 2a6h_D DNA-directed RNA polyme 40.5 15 0.00051 48.7 3.7 52 782-847 694-748 (1524)
223 4ayb_A DNA-directed RNA polyme 39.4 15 0.00051 46.7 3.5 52 782-847 411-465 (880)
224 1gh8_A Translation elongation 36.4 29 0.00099 31.8 3.9 60 455-517 19-78 (89)
225 1f60_B Elongation factor EEF1B 35.5 28 0.00094 32.2 3.6 58 455-515 24-81 (94)
226 3p3d_A Nucleoporin 53; structu 33.7 70 0.0024 31.3 6.3 76 5-87 9-98 (132)
227 1twf_A B220, DNA-directed RNA 30.3 24 0.00081 48.0 3.2 53 781-847 435-490 (1733)
228 2yy3_A Elongation factor 1-bet 29.0 36 0.0012 31.2 3.3 59 455-516 21-80 (91)
229 2cos_A Serine/threonine protei 25.8 66 0.0023 26.7 3.9 43 638-686 7-49 (54)
230 3d45_A Poly(A)-specific ribonu 21.6 1.1E+02 0.0039 36.2 6.6 53 5-69 442-494 (507)
231 2g0c_A ATP-dependent RNA helic 21.5 1.2E+02 0.0043 25.8 5.2 64 12-86 10-75 (76)
232 3h0g_A DNA-directed RNA polyme 21.4 42 0.0014 45.7 3.0 54 781-848 441-497 (1752)
No 1
>2j7n_A RNA-dependent RNA polymerase; RNAI response, RNA-directed RNA polymerase, hydrolase; 2.30A {Neurospora crassa} PDB: 2j7o_A
Probab=100.00 E-value=8.5e-122 Score=1143.26 Aligned_cols=537 Identities=19% Similarity=0.266 Sum_probs=434.7
Q ss_pred CeEEecCCcccccCceecccCcCCCcEEEEEEeeCCCCCCCCCcccccccccccCcchhhHHHHHHHHHh----------
Q 001183 397 MKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTIL---------- 466 (1131)
Q Consensus 397 t~i~~~~P~~e~sNRvlR~y~~~~d~FLRV~F~DE~~~~l~~~~~~~~~~~~~~~~~~~~~i~~Rv~~~L---------- 466 (1131)
.++.|.+|+++.|||++|+|+ +||||||+|.+++....+..+. +. ..+ ..+++|.++|
T Consensus 131 ~~l~L~p~~l~~s~R~~RrfG--sDrFL~V~fp~~~~~~~~~~~~---~~----~~~---~~~~~v~~~l~~~~~~~~gr 198 (1022)
T 2j7n_A 131 YLVKLKPLMFEQGCRLTRRFG--PDRFFEILIPSPTSTSPSVPPV---VS----KQP---AAVEEVIQWLTMGQHSLVGR 198 (1022)
T ss_dssp EEEEECCCEEEECBHHHHHHC--GGGEEEEEEECTTCCCSSSCTT---SS----SSS---SCHHHHHHHHHSSCEEETTE
T ss_pred eEEEecCCccCCCceEEEeeC--CceeEEEEecCCccccccccch---hc----cch---HHHHHHHHHHhcCcEEEecc
Confidence 488999999999999999999 5999999999986542211100 00 000 1234444444
Q ss_pred --------------------------------------hcCeEEcCeEEEEeeecccccccCeEEEEecCCCCCHHHHHH
Q 001183 467 --------------------------------------QDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRG 508 (1131)
Q Consensus 467 --------------------------------------~~Gi~I~gr~y~FLafS~SqlR~~s~wff~~~~~~t~~~Ir~ 508 (1131)
.+|+.|++++|+||++ ||+|++++| ...+|+++||+
T Consensus 199 ~~r~f~~~d~~~r~~~~~~~l~~~~~~~~~~~Rv~~f~~~G~~i~~~~f~fl~~--s~lre~s~~----~~~ls~~~ir~ 272 (1022)
T 2j7n_A 199 QWRAFFAKDAGYRKPLREFQLRAEDPKPIIKERVHFFAETGITFRPDVFKTRSV--VPAEEPVEQ----RTEFKVSQMLD 272 (1022)
T ss_dssp EEEEEEEEECC--------------CCCCCEEEEEEEEEEETTCBCCCC---------------C----CBCCCHHHHHH
T ss_pred eeEEEeeccccccccccccccccccccccccceEEEEeccCccccCcccccccc--ccccccccc----cCCCCHHHHHH
Confidence 4555555555555555 455555555 23589999999
Q ss_pred HcCCCCCCC--CHHHHHHHHhccccCCcceeeeeCCcEEEc-CCccccCCCCccccccccceecHHHHHHHHHHcCCCCC
Q 001183 509 WMGCFNKIR--SVSKCAARMGQLFSSSKQTLVVPVQDVEMI-PDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHT 585 (1131)
Q Consensus 509 wmG~F~~i~--~vaK~aARigq~FSsT~~t~~i~~~~i~~I-~DI~~~~~g~~~~FTDG~G~IS~~la~~I~~~l~l~~~ 585 (1131)
|||+|++++ +++|||||||||||+|.+++.|++++|..+ |||+. .+|++|+||||||+||++||++|++++++...
T Consensus 273 wmg~f~~n~~q~~aK~aARigq~FS~T~~tv~v~~~~I~~~~dDI~~-~~g~g~vFTDGvG~IS~~lA~~I~~~l~l~~~ 351 (1022)
T 2j7n_A 273 WLLQLDNNTWQPHLKLFSRIQLGLSKTYAIMTLEPHQIRHHKTDLLS-PSGTGEVMNDGVGRMSRSVAKRIRDVLGLGDV 351 (1022)
T ss_dssp HHHCGGGCTTSBHHHHHHTTHHHHSBCEEEEECCGGGEEECSSCCBC-TTSSCCBSSTTEEEECHHHHHHHHHHHTCSSC
T ss_pred hccChhhcccchHHHHHHHhhhhhcCccCcEEechHHEEEcCCcccc-CCCCCCeecCCchHhhHHHHHHHHHHcCCCCC
Confidence 999998764 599999999999999999999999999875 78863 45678999999999999999999999999999
Q ss_pred CceeEeecCCceEEEEeeCCC-C--ceEEeccccccccc-----cCcceeEEeec-CCccccccHHHHHHHhhCCCCHHH
Q 001183 586 PSAFQIRYGGYKGVIAVDRNS-F--RKLSLRRSMLKFES-----RNRMLNVTKWS-ESMPCFLNREIISLLSTLGVKDEV 656 (1131)
Q Consensus 586 PSAfQiR~gG~KGvl~vdp~~-~--~~I~lR~Sm~KF~s-----~~~~LeI~~~S-~~~p~~LNRQ~I~iL~~lGV~~~v 656 (1131)
|||||||||||||||+|||++ + .+|+|||||.||++ .+++|||+++| ++.|++||||+|+||+++||++++
T Consensus 352 PSAfQiR~gGaKGvl~vdp~~~~~~~~I~lRpSm~KF~~~~~d~~~~~LEIv~~s~~~~~~~LNRQlI~lL~~lGV~~~~ 431 (1022)
T 2j7n_A 352 PSAVQGRFGSAKGMWVIDVDDTGDEDWIETYPSQRKWECDFVDKHQRTLEVRSVASELKSAGLNLQLLPVLEDRARDKVK 431 (1022)
T ss_dssp CSEEEEEETTEEEEEEECTTCCSCCCCEEECTTTBCSCCCCCSGGGSEEEEEEECCCCCCCCBCTTTHHHHHHTBSSHHH
T ss_pred CcEEEEEeccceEEEEECcccCCCcceEEeCCcceeecCCCCCcccCeEEEEeecCCCCCceecHHHHHHHHhCCcCHHH
Confidence 999999999999999999986 2 35999999999986 46899999998 589999999999999999999999
Q ss_pred HHHHHHHHH--------HHHHHHhcCHHHHHHHHHhccC------------------CChHHHHHHHHHcCCCCCCcHHH
Q 001183 657 FEAMQQQQL--------ILLGKMLINREAALDVLQKLNG------------------VDSKNILVKMLLQGYEPNVEPYL 710 (1131)
Q Consensus 657 F~~lq~~~l--------~~l~~~l~d~~~a~~~L~~~~~------------------~~~~~~l~~ml~~Gf~~~~epfl 710 (1131)
|++++.+++ .....++.++..+.+++..... ...++++..|+.+||+|.++|||
T Consensus 432 f~~~i~~~~~~~L~~~l~~~~~al~~~~~~r~~l~~~~~~~~~r~~~g~~~~~~glp~s~~~~l~~Ll~aGf~p~~epfL 511 (1022)
T 2j7n_A 432 MRQAIGDRLINDLQRQFSEQKHALNRPVEFRQWVYESYSSRATRVSHGRVPFLAGLPDSQEETLNFLMNSGFDPKKQKYL 511 (1022)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHSCCHHHHHHHTSCCEETTEESSHHHHHHHHHHTTCCTTTBHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHhhccccccccccccchhhccCccchHHHHHHHHHcCCCccccHHH
Confidence 988765543 2334566777777776643211 12346788999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcceeeeecCceEEEEEecCCCCCCCCcEEEEEccchhhhhccccccccccCCcceeEe-eeEEE
Q 001183 711 SMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVK-GKVLV 789 (1131)
Q Consensus 711 ~~~L~~~~~~~l~~lk~K~rI~Vp~s~~l~GV~DetG~L~~GEVfv~~s~~~~~~~~~~~~~~~~~~~~~~vi~-G~VlV 789 (1131)
+++++.+++.+|+.||+|+||+||+|++||||+||||+|+||||||+++.... .......++. |+|+|
T Consensus 512 ~~~l~~~~~~~l~~LK~k~rI~V~~s~~L~GV~DetG~L~eGEVfv~~s~~~~-----------~~~~~~~~l~gg~VlV 580 (1022)
T 2j7n_A 512 QDIAWDLQKRKCDTLKSKLNIRVGRSAYIYMIADFWGVLEENEVHVGFSSKFR-----------DEEESFTLLSDCDVLV 580 (1022)
T ss_dssp HHHHHHHHHHHHHHHHHHCCBCCSSEEEEEEEECTTSCCCTTEEEEEEEEEEE-----------ETTEEEEEECSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhhccccccceEEEEEecCCCccCCCeEEEEeccccc-----------cCCCCceeecCceEEE
Confidence 99999999999999999999999999999999999999999999999986311 1112334565 69999
Q ss_pred eeCCCCCCCCeeEEEEEccCcccccCCcceEEecCCCCCCCCCcCCCCCCCCCeEEEeecCCCCCCCCCCCCCCCCC---
Q 001183 790 TKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGR--- 866 (1131)
Q Consensus 790 ~RnP~lhPGDIr~v~AV~~P~L~~~hl~dvIVFp~kG~Rplps~lSGGDLDGD~y~ViWD~~Lvp~~~~~P~~Y~~~--- 866 (1131)
+|||||||||||+|+||++|+| |||+||||||++|+||+||||||||||||+|||||||+|||++.+.|+...+.
T Consensus 581 tRnP~lhPGDIrvv~AV~~PeL--~hL~DvIVFp~kG~Rplps~lSGGDLDGD~Y~ViWD~~Lv~~f~na~~p~~p~~~~ 658 (1022)
T 2j7n_A 581 ARSPAHFPSDIQRVRAVFKPEL--HSLKDVIIFSTKGDVPLAKKLSGGDYDGDMAWVCWDPEIVDGFVNAEMPLEPDLSR 658 (1022)
T ss_dssp ECSSCCSGGGEEEEEECCCGGG--TTCCSEEEECSCSSSCHHHHTTTCCSSSCEEEEECCHHHHHTBCCCCCCCCCCCTT
T ss_pred EeCCCcCcCceeEEEeccChhh--hccCCeEEccCCCCCCChhHhcCCCCCCCeEEEEechhhcccccCCCCCCCCchhh
Confidence 9999999999999999999999 99999999999999999999999999999999999999999987665543221
Q ss_pred ----ccccC----C--------CCCCHH-HHHHHHHHhhccCchhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHhcccc
Q 001183 867 ----RSRIM----D--------HDVTLE-EIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDF 929 (1131)
Q Consensus 867 ----~~~~l----~--------~~vt~~-di~~ffv~ym~~d~LG~is~~Hl~~aD~~~~g~~~~~cl~LA~L~S~AVD~ 929 (1131)
....+ + ++++.+ .|.+||+.||++|.||+|||+|+..+|+. .|+.+++|++||+|||+||||
T Consensus 659 y~~k~~~~~~~~~~~~~~g~~~~~~~~~d~i~~ff~~~m~~d~LG~is~~h~~~~~~~-~g~~~~~cl~LA~L~S~AVD~ 737 (1022)
T 2j7n_A 659 YLKKDKTTFKQLMASHGTGSAAKEQTTYDMIQKSFHFALQPNFLGMCTNYKERLCYIN-NSVSNKPAIILSSLVGNLVDQ 737 (1022)
T ss_dssp TSEECCCBHHHHHTTTCSSHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH-TCSSSHHHHHHHHHHHHHTTH
T ss_pred hccccccchhhhhhccccccccCchhHHHHHHHHHHHhcCcchHHHHHHHHHHHHhhc-CCCCCHHHHHHHHHHHHhhCc
Confidence 11111 0 112334 45679999999999999999999888764 799999999999999999999
Q ss_pred cCCCCCCCC--CccCCCCCCCcccCCCCCCcccccchhhH
Q 001183 930 AKTGAPAEM--PLALKPKEFPDFMEREDKPRYISFGVLGK 967 (1131)
Q Consensus 930 ~KTG~~v~l--p~~l~~~~~PdFm~k~~~~~Y~S~kiLGk 967 (1131)
||||+|+++ ++.++|+.+||||+ .++|+|+|++++|+
T Consensus 738 ~KtG~pv~~~~~~~lr~~~~p~~m~-~~~p~Y~s~~~~g~ 776 (1022)
T 2j7n_A 738 SKQGIVFNEASWAQLRRELLGGALS-LPDPMYKSDSWLGR 776 (1022)
T ss_dssp HHHTEECCHHHHHHHHHHHSCCSSC-CCCCGGGSSSCCSS
T ss_pred cccCcccChhhhhhhhHhhCCCCCC-CCCCccccCcccCC
Confidence 999999998 77889999999999 67899999988877
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.69 E-value=6.6e-17 Score=152.10 Aligned_cols=80 Identities=23% Similarity=0.284 Sum_probs=76.3
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
+++|||||||+++|+++|+++|+++ |.|.+|+|+.|+.||++||||||+|.+.++|++|++.+ ||..++||.|+|
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~---G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~l--ng~~~~gr~l~V 93 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSI---GEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL--NGLRLQSKTIKV 93 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTT---SCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHh--CCCEECCEEEEE
Confidence 5789999999999999999999997 79999999999999999999999999999999999999 489999999999
Q ss_pred ecCCC
Q 001183 83 SETHS 87 (1131)
Q Consensus 83 ~~a~~ 87 (1131)
+.|.|
T Consensus 94 ~~AkP 98 (99)
T 4fxv_A 94 SYARP 98 (99)
T ss_dssp EECCB
T ss_pred EEeeC
Confidence 99864
No 3
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.65 E-value=7.6e-17 Score=149.20 Aligned_cols=82 Identities=20% Similarity=0.263 Sum_probs=76.3
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCc-eEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeE
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKN-SVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLK 81 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G-~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~ 81 (1131)
+++|+|+|||+++|++||+++|+++ | +|.+|+|+.|+.||++||||||+|++.++|++|+++++ ++..++||.|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~---G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~-~~~~~~gr~i~ 76 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSH---GVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQ-HSLNILGQKVS 76 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHH---TCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTT-TEEEETTEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHh---CCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcC-CCeEECCEEEE
Confidence 4789999999999999999999997 6 89999999999999999999999999999999999874 57899999999
Q ss_pred eecCCCC
Q 001183 82 ISETHSD 88 (1131)
Q Consensus 82 V~~a~~~ 88 (1131)
|+-|.+.
T Consensus 77 V~~a~~~ 83 (91)
T 2lxi_A 77 MHYSDPK 83 (91)
T ss_dssp EECCCSC
T ss_pred EEEcCCC
Confidence 9988763
No 4
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.64 E-value=1.4e-16 Score=146.49 Aligned_cols=83 Identities=18% Similarity=0.203 Sum_probs=72.1
Q ss_pred cEEEEeCCCCcCCHHHHHHHHhhccCCc--eEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeE
Q 001183 4 ATVWVSNIPQTAIAKDLLLFLESKLGKN--SVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLK 81 (1131)
Q Consensus 4 ~ti~Vgnl~~~~t~~~L~~~fe~~~G~G--~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~ 81 (1131)
.+|||||||+++|+++|+++|+++ | .|.+|+|+.|+.||++||||||+|.+.++|++|++.++ |..++||.|+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~---G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~--g~~~~gr~i~ 76 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSL---GVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLP--KRELHGQNPV 76 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTT---TCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGG--GSCSSSCCCE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHh---CCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcC--CCeeCCEEEE
Confidence 379999999999999999999998 7 99999999999999999999999999999999999995 8999999999
Q ss_pred eecCCCCCCC
Q 001183 82 ISETHSDIVP 91 (1131)
Q Consensus 82 V~~a~~~i~~ 91 (1131)
|..+.++.-+
T Consensus 77 V~~~~~~~~~ 86 (90)
T 3p5t_L 77 VTPSNKLEHH 86 (90)
T ss_dssp ECCC------
T ss_pred EEECCCCccc
Confidence 9999887653
No 5
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.61 E-value=1.5e-15 Score=145.69 Aligned_cols=81 Identities=16% Similarity=0.065 Sum_probs=76.9
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||||||+.+++++|+++|+++ |.|.+|+|+.|+.||+|||||||+|++.++|++|++.+ ||..++||.|+|
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~~~---G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~l--ng~~~~gr~i~V 80 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCRKY---GEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNL--HLTSVMGNIIHA 80 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTT---SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhc---CCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHh--CCCEECCeEEEE
Confidence 4799999999999999999999998 79999999999999999999999999999999999999 499999999999
Q ss_pred ecCCCC
Q 001183 83 SETHSD 88 (1131)
Q Consensus 83 ~~a~~~ 88 (1131)
..|...
T Consensus 81 ~~a~~~ 86 (110)
T 3s8s_A 81 QLDIKG 86 (110)
T ss_dssp EECSTT
T ss_pred EECCCC
Confidence 988654
No 6
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.60 E-value=2.8e-15 Score=134.78 Aligned_cols=81 Identities=21% Similarity=0.169 Sum_probs=76.5
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
+.+|||||||+++++++|+++|+++ |.|.+++|..++.+|++||||||+|.+.++|++|+..+ ||..++|+.|+|
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~---G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l--~g~~~~g~~l~v 75 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDF---PSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSM--QGQDLNGRPLRI 75 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTS---TTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHH--TTCEETTEECEE
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhc---CCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHh--cCCeeCCcEEEE
Confidence 4689999999999999999999997 79999999999999999999999999999999999999 489999999999
Q ss_pred ecCCCC
Q 001183 83 SETHSD 88 (1131)
Q Consensus 83 ~~a~~~ 88 (1131)
+.|.+.
T Consensus 76 ~~a~~~ 81 (83)
T 3md1_A 76 NWAAKL 81 (83)
T ss_dssp EECCCC
T ss_pred EecCcC
Confidence 998763
No 7
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.60 E-value=6.7e-16 Score=144.55 Aligned_cols=84 Identities=18% Similarity=0.266 Sum_probs=74.7
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcC--CCceecCcee
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLN--DKLVFNSQNL 80 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~--~~~~~~gr~L 80 (1131)
+.||||+|||+++|+++|+++|+++ |+-+|.+|+|+.|+.||+|||||||+|.+.++|++|++.++. ..+.++||.|
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~-G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPY-ASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTT-CCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhh-CCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 4689999999999999999999997 533688999999999999999999999999999999999962 1246999999
Q ss_pred EeecCCC
Q 001183 81 KISETHS 87 (1131)
Q Consensus 81 ~V~~a~~ 87 (1131)
+|+-|+.
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9998864
No 8
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.59 E-value=3.1e-15 Score=135.74 Aligned_cols=81 Identities=12% Similarity=0.103 Sum_probs=75.5
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
..+|||||||+++++++|+++|+++ |.|.+|+|..++.+|++||||||+|.+.++|++|++.++ |..++|+.|+|
T Consensus 6 ~~~l~v~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~--g~~~~g~~l~v 80 (87)
T 3bs9_A 6 HFHVFVGDLSPEITTAAIAAAFAPF---GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG--GQWLGGRQIRT 80 (87)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGG---SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT--TCEETTEECEE
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhc---CCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcC--CCEECCeEEEE
Confidence 3689999999999999999999997 799999999999999999999999999999999999994 89999999999
Q ss_pred ecCCCC
Q 001183 83 SETHSD 88 (1131)
Q Consensus 83 ~~a~~~ 88 (1131)
+.|.+.
T Consensus 81 ~~a~~k 86 (87)
T 3bs9_A 81 NWATRK 86 (87)
T ss_dssp EEEC--
T ss_pred EecCCC
Confidence 998764
No 9
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.59 E-value=2.7e-15 Score=144.51 Aligned_cols=80 Identities=15% Similarity=0.285 Sum_probs=73.8
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
+++|||||||+++|+++|+++|+++ |.|.+|+|+.|+ ++|||||||+|++.++|++|++.+ +|..++||.|+|
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~---G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l--~~~~~~g~~i~V 77 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAF---GNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM--NGMLLNDRKVFV 77 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGG---SCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHH--TTCEETTEECEE
T ss_pred CCEEEECCCCCCCCHHHHHHHHhcc---CCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHc--CCCEECCEEEEE
Confidence 3589999999999999999999998 799999999997 569999999999999999999999 489999999999
Q ss_pred ecCCCCC
Q 001183 83 SETHSDI 89 (1131)
Q Consensus 83 ~~a~~~i 89 (1131)
..+....
T Consensus 78 ~~a~~~~ 84 (115)
T 4f25_A 78 GRFKSRK 84 (115)
T ss_dssp EESSCCC
T ss_pred EECCCcc
Confidence 9987643
No 10
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.59 E-value=1.3e-15 Score=149.04 Aligned_cols=83 Identities=10% Similarity=0.051 Sum_probs=72.2
Q ss_pred cccEEEEeCC----CCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCC-----hHH---HHHHHH--h
Q 001183 2 VLATVWVSNI----PQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTS-----LDF---KSKAQN--L 67 (1131)
Q Consensus 2 m~~ti~Vgnl----~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~-----~e~---A~~Ai~--~ 67 (1131)
|.++|||||| |+++++.+|++||++| |+|.+|++++|++||+|||||||+|.+ .++ |.+|+. .
T Consensus 1 mp~kI~VgnL~~~~~~~tte~~Lk~~Fs~f---GeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~ 77 (136)
T 2j8a_A 1 MSCEIVVYPAQDSTTTNIQDISIKNYFKKY---GEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHE 77 (136)
T ss_dssp -CCEEEEEESSSSCCCCCCHHHHHHHHHTT---SCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTT
T ss_pred CCcEEEEeCCCCCCCCCCCHHHHHHHHHhc---CCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhh
Confidence 7899999999 9999999999999998 799999999999999999999999995 333 677766 4
Q ss_pred hcCCCceecCceeEeecCCCCC
Q 001183 68 SLNDKLVFNSQNLKISETHSDI 89 (1131)
Q Consensus 68 ~~~~~~~~~gr~L~V~~a~~~i 89 (1131)
+ ||..++||.|+|+.-+...
T Consensus 78 l--ng~~I~Gr~irV~ln~~g~ 97 (136)
T 2j8a_A 78 S--SGCFIMGFKFEVILNKHSI 97 (136)
T ss_dssp T--TCEEETTEEEEEEECCTTH
T ss_pred h--cCCeecCcEEEEEECcccH
Confidence 4 6999999999999766544
No 11
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.59 E-value=1.5e-15 Score=142.71 Aligned_cols=81 Identities=16% Similarity=0.143 Sum_probs=76.3
Q ss_pred cccEEEEeCCCC------cCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCcee
Q 001183 2 VLATVWVSNIPQ------TAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVF 75 (1131)
Q Consensus 2 m~~ti~Vgnl~~------~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~ 75 (1131)
+.++|||||||+ .+++++|+++|+++ |.|.+|+|..|+.||++||||||+|+++++|++|+..+ ||..+
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~---G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~l--ng~~~ 79 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKA---GKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSF--HGKRL 79 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTT---SCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHH--TTCBS
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhc---CCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHh--CCccc
Confidence 467999999999 99999999999998 79999999999999999999999999999999999999 48999
Q ss_pred cC-ceeEeecCCC
Q 001183 76 NS-QNLKISETHS 87 (1131)
Q Consensus 76 ~g-r~L~V~~a~~ 87 (1131)
+| |.|+|+.|.+
T Consensus 80 ~g~r~l~V~~a~~ 92 (100)
T 3ns6_A 80 DLKHRLFLYTMKD 92 (100)
T ss_dssp SSSCBCEEEESHH
T ss_pred CCCeEEEEEECch
Confidence 99 9999998753
No 12
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=7.3e-15 Score=136.82 Aligned_cols=84 Identities=20% Similarity=0.211 Sum_probs=79.2
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||+|||+.+|+++|+++|+.+ |.|.+|+|..++.+|++||||||+|.+.++|++|+..+ |+..++|+.|+|
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~V 82 (99)
T 1whw_A 8 SGRLFVRNLSYTSSEEDLEKLFSAY---GPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEV--DGQVFQGRMLHV 82 (99)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHHTT---SCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHT--TTEESSSCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHh--CCCEECCcEEEE
Confidence 4689999999999999999999998 79999999999999999999999999999999999999 489999999999
Q ss_pred ecCCCCCCC
Q 001183 83 SETHSDIVP 91 (1131)
Q Consensus 83 ~~a~~~i~~ 91 (1131)
..|.+..-+
T Consensus 83 ~~a~~~~~~ 91 (99)
T 1whw_A 83 LPSTIKKEA 91 (99)
T ss_dssp EECCCCSTT
T ss_pred EEcCCCccc
Confidence 999887653
No 13
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.57 E-value=5.9e-15 Score=137.00 Aligned_cols=83 Identities=18% Similarity=0.274 Sum_probs=78.5
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
+++|||||||+.+++++|+++|+++ |.|.+|+|..++.+|++||||||+|.+.++|++|++.+ ||..++|+.|+|
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~V 76 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNV---GPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNL--NGYQLGSRFLKC 76 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTT---SCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHH--TTCEETTEECEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhc---CCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHh--CCCeECCeEEEE
Confidence 4799999999999999999999998 79999999999999999999999999999999999999 489999999999
Q ss_pred ecCCCCCC
Q 001183 83 SETHSDIV 90 (1131)
Q Consensus 83 ~~a~~~i~ 90 (1131)
..|.+...
T Consensus 77 ~~a~~~~~ 84 (96)
T 2x1f_A 77 GYSSNSDI 84 (96)
T ss_dssp EECSCSSG
T ss_pred EEcCCCCC
Confidence 99988663
No 14
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.57 E-value=7.4e-15 Score=133.79 Aligned_cols=80 Identities=18% Similarity=0.321 Sum_probs=75.3
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||+|||+++|+++|+++|+++ |.|.+++|..++.||++||||||+|.+.++|++|+ .+ |+..++|+.|+|
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~--~g~~~~g~~l~V 79 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGC---GSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-AL--DESLFRGRQIKV 79 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGG---CCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GG--TTCEETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC---CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hc--CCCEECCcEEEE
Confidence 4689999999999999999999997 79999999999999999999999999999999999 77 489999999999
Q ss_pred ecCCCC
Q 001183 83 SETHSD 88 (1131)
Q Consensus 83 ~~a~~~ 88 (1131)
..|.++
T Consensus 80 ~~a~~~ 85 (89)
T 3ucg_A 80 IPKRTN 85 (89)
T ss_dssp EETTTT
T ss_pred EEccCC
Confidence 998763
No 15
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=1.4e-14 Score=133.76 Aligned_cols=84 Identities=11% Similarity=0.208 Sum_probs=78.8
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||+|||+.+++++|+++|+++ |.|..|+|..++.||++||||||+|.+.++|++|++.+ |+..++|+.|+|
T Consensus 5 ~~~l~v~nlp~~~t~~~l~~~f~~~---G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~V 79 (95)
T 2dnz_A 5 SSGLYVGSLHFNITEDMLRGIFEPF---GKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL--NGFELAGRPMRV 79 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTT---SCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHH--TTCCSSSSCCEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhc---CCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHh--CCCeeCCcEEEE
Confidence 4789999999999999999999997 79999999999999999999999999999999999999 489999999999
Q ss_pred ecCCCCCCC
Q 001183 83 SETHSDIVP 91 (1131)
Q Consensus 83 ~~a~~~i~~ 91 (1131)
..|.+..-+
T Consensus 80 ~~a~~~~~~ 88 (95)
T 2dnz_A 80 GHVTERLDG 88 (95)
T ss_dssp EESSCCCCC
T ss_pred EEcccccCC
Confidence 999886543
No 16
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.56 E-value=6.2e-15 Score=137.61 Aligned_cols=79 Identities=16% Similarity=0.207 Sum_probs=74.7
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEE--------EEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCce
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFA--------LEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLV 74 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~--------~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~ 74 (1131)
..+|||||||+++|+++|+++|+++ |.|.. ++|..|+.||++||||||+|.+.++|++|++.++ |..
T Consensus 13 ~~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~--g~~ 87 (99)
T 2la6_A 13 NNTIFVQGLGENVTIESVADYFKQI---GIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFD--GKE 87 (99)
T ss_dssp CSEEEEECCCSSCCHHHHHHHHTTT---SCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHT--TCB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHh---CCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhC--CCE
Confidence 4689999999999999999999997 79999 9999999999999999999999999999999994 899
Q ss_pred ecCceeEeecCC
Q 001183 75 FNSQNLKISETH 86 (1131)
Q Consensus 75 ~~gr~L~V~~a~ 86 (1131)
++|+.|+|+.|.
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999763
No 17
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.56 E-value=7.6e-15 Score=132.56 Aligned_cols=79 Identities=14% Similarity=0.152 Sum_probs=74.8
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||+|||+++++++|+++|+++ |.|.+++|..++.+|++||||||+|.+.++|++|+..+ ||..++|+.|+|
T Consensus 7 ~~~l~V~nl~~~~~~~~l~~~f~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v 81 (85)
T 3mdf_A 7 KRVLYVGGLAEEVDDKVLHAAFIPF---GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM--NESELFGRTIRV 81 (85)
T ss_dssp SSEEEEECCCTTCCHHHHHHHHGGG---SCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHH--TTCEETTEECEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHhcc---CCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHh--CCCEECCcEEEE
Confidence 4689999999999999999999997 79999999999999999999999999999999999999 489999999999
Q ss_pred ecCC
Q 001183 83 SETH 86 (1131)
Q Consensus 83 ~~a~ 86 (1131)
+.|+
T Consensus 82 ~~ak 85 (85)
T 3mdf_A 82 NLAK 85 (85)
T ss_dssp EECC
T ss_pred EEcC
Confidence 8764
No 18
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=7.5e-15 Score=137.88 Aligned_cols=86 Identities=16% Similarity=0.224 Sum_probs=79.9
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||||||+.+++++|+++|+++ |.|.+|+|..++.+|++||||||+|.+.++|++|+..+ |+..++|+.|+|
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~f~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~v 89 (103)
T 2cq0_A 15 NATIRVTNLSEDTRETDLQELFRPF---GSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGV--SGFGYDHLILNV 89 (103)
T ss_dssp SEEEEEESCCTTCCHHHHHTTSTTT---CCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHT--TTCEETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC---CCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHc--CCCeeCCcEEEE
Confidence 4689999999999999999999997 79999999999999999999999999999999999999 489999999999
Q ss_pred ecCCCCCCCCC
Q 001183 83 SETHSDIVPRP 93 (1131)
Q Consensus 83 ~~a~~~i~~~~ 93 (1131)
..|.+..-++|
T Consensus 90 ~~a~~~~~~~~ 100 (103)
T 2cq0_A 90 EWAKPSTNSGP 100 (103)
T ss_dssp EESSCCCCSCC
T ss_pred EECCCCCCCCC
Confidence 99988765433
No 19
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=5.9e-15 Score=139.99 Aligned_cols=79 Identities=19% Similarity=0.233 Sum_probs=73.1
Q ss_pred cccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeE
Q 001183 2 VLATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLK 81 (1131)
Q Consensus 2 m~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~ 81 (1131)
..++|||||||+++|+++|+++|+++ |.|.+|+|..|+. |++||||||+|+++++|++|+. + ++..++|+.|+
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~---G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~--~~~~~~gr~l~ 82 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDK---GQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-T--PGQKYKETDLL 82 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTS---SCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-S--SCCCCTTTTCE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhc---CCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-c--CCCEECCEEEE
Confidence 35799999999999999999999998 7999999999997 9999999999999999999999 5 48999999999
Q ss_pred eecCCC
Q 001183 82 ISETHS 87 (1131)
Q Consensus 82 V~~a~~ 87 (1131)
|..+.+
T Consensus 83 V~~~~~ 88 (103)
T 1s79_A 83 ILFKDD 88 (103)
T ss_dssp EEEHHH
T ss_pred EEEchH
Confidence 986544
No 20
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.55 E-value=1.1e-14 Score=132.53 Aligned_cols=77 Identities=17% Similarity=0.227 Sum_probs=72.1
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||||||+.+++++|+++|+++ |.|.+|+|..++.||++||||||+|.+.++|++|+++. +..++|+.|+|
T Consensus 11 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~---~~~~~g~~i~v 84 (87)
T 3s7r_A 11 AGKMFVGGLSWDTSKKDLKDYFTKF---GEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK---EHRLDGRVIDP 84 (87)
T ss_dssp TTEEEEECCCTTCCHHHHHHHHTTT---SCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSS---CEEETTEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC---CCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhC---CCEECCEEEEE
Confidence 4689999999999999999999997 79999999999999999999999999999999999764 67899999999
Q ss_pred ecC
Q 001183 83 SET 85 (1131)
Q Consensus 83 ~~a 85 (1131)
..|
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 21
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.55 E-value=9.7e-15 Score=148.65 Aligned_cols=80 Identities=21% Similarity=0.287 Sum_probs=76.1
Q ss_pred cEEEEeCCCCcCCHHHHHHHHhhccCCc--eEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeE
Q 001183 4 ATVWVSNIPQTAIAKDLLLFLESKLGKN--SVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLK 81 (1131)
Q Consensus 4 ~ti~Vgnl~~~~t~~~L~~~fe~~~G~G--~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~ 81 (1131)
.+|||||||+.+|+++|+++|+.+ | .|.+|+|+.|+.||++||||||+|.+.++|++|+..+ ||..++||.|+
T Consensus 56 ~~lfVgnLp~~~te~~L~~~F~~~---G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~l--ng~~~~Gr~l~ 130 (156)
T 3n9u_C 56 AAVYVGSFSWWTTDQQLIQVIRSI---GVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELL--PGKVLNGEKVD 130 (156)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHHT---TCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHS--TTCEETTEECE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHH---CCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHc--CCCEECCeEeE
Confidence 589999999999999999999998 7 9999999999999999999999999999999999999 48999999999
Q ss_pred eecCCCC
Q 001183 82 ISETHSD 88 (1131)
Q Consensus 82 V~~a~~~ 88 (1131)
|+.|.+.
T Consensus 131 V~~a~~~ 137 (156)
T 3n9u_C 131 VRPATRQ 137 (156)
T ss_dssp EEECCHH
T ss_pred EEEcCCC
Confidence 9988653
No 22
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=7.7e-15 Score=137.42 Aligned_cols=85 Identities=13% Similarity=0.133 Sum_probs=79.4
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||+|||+.+++++|+++|+++ |.|.+|+|..++.||++||||||+|++.++|++|++.+ |+..++|+.|+|
T Consensus 12 ~~~l~V~nLp~~~t~~~l~~~f~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~V 86 (102)
T 2cqb_A 12 KRVLYVGGLAEEVDDKVLHAAFIPF---GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM--NESELFGRTIRV 86 (102)
T ss_dssp CSCEEEESCCSSCCHHHHHHHHTTT---SCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHH--TTEEETTEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHhhcc---CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHh--CCCEECCcEEEE
Confidence 4689999999999999999999997 79999999999999999999999999999999999999 489999999999
Q ss_pred ecCCCCCCCC
Q 001183 83 SETHSDIVPR 92 (1131)
Q Consensus 83 ~~a~~~i~~~ 92 (1131)
..|.+...++
T Consensus 87 ~~a~~~~~~~ 96 (102)
T 2cqb_A 87 NLAKPMRIKE 96 (102)
T ss_dssp EECCCCCCCC
T ss_pred EeCCCCCCCC
Confidence 9998877533
No 23
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=1.2e-14 Score=135.06 Aligned_cols=86 Identities=13% Similarity=0.178 Sum_probs=79.1
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCC---CCCccceEEEEeCChHHHHHHHHhhcCCCceecCce
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRS---NWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQN 79 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~---tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~ 79 (1131)
.++|||||||+.+|+++|+++|+.+ |.|.+|+|..++. |+++||||||+|.+.++|++|+..++ +..++|+.
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~--g~~~~g~~ 79 (98)
T 2cpf_A 5 SSGLFIKNLNFSTTEETLKGVFSKV---GAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQ--GHTVDGHK 79 (98)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTT---SCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHST--TCEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhC--CCeeCCeE
Confidence 4689999999999999999999997 7999999999987 77999999999999999999999994 89999999
Q ss_pred eEeecCCCCCCCCC
Q 001183 80 LKISETHSDIVPRP 93 (1131)
Q Consensus 80 L~V~~a~~~i~~~~ 93 (1131)
|+|..|.+..-+++
T Consensus 80 l~V~~a~~~~~~~~ 93 (98)
T 2cpf_A 80 LEVRISERATKPAS 93 (98)
T ss_dssp CEEECSSCSSCCCC
T ss_pred EEEEEccCCCCCCC
Confidence 99999988775443
No 24
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=2e-14 Score=133.97 Aligned_cols=82 Identities=16% Similarity=0.234 Sum_probs=77.1
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||||||+.+++++|+++|+++ |.|..|+|+.++.||++||||||+|++.++|++|++ + ++..++|+.|+|
T Consensus 10 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~--~~~~~~g~~l~V 83 (99)
T 2dgs_A 10 SNKIFVGGIPHNCGETELREYFKKF---GVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-M--HFHDIMGKKVEV 83 (99)
T ss_dssp CCEEEEESCCSSCCHHHHHHHHSSS---SCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-H--CCCBSSSCBCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-h--CCCEECCeEEEE
Confidence 5789999999999999999999997 799999999999999999999999999999999999 7 489999999999
Q ss_pred ecCCCCCC
Q 001183 83 SETHSDIV 90 (1131)
Q Consensus 83 ~~a~~~i~ 90 (1131)
..|.+..-
T Consensus 84 ~~a~~~~~ 91 (99)
T 2dgs_A 84 KRAEPRDS 91 (99)
T ss_dssp EECCCCCC
T ss_pred EECCCCcc
Confidence 99987654
No 25
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.55 E-value=1.3e-14 Score=139.14 Aligned_cols=86 Identities=17% Similarity=0.189 Sum_probs=79.7
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||+|||+.+++++|+++|+.+ |.|..|+|+.++.+|++||||||+|.+.++|++|++.++ +..++|+.|+|
T Consensus 25 ~~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~--g~~~~g~~l~V 99 (115)
T 2cpz_A 25 GANLFIYHLPQEFGDQDLLQMFMPF---GNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMN--GFQIGMKRLKV 99 (115)
T ss_dssp TCCEEEESCCSSCCHHHHHHHHGGG---SCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHT--TCEETTEECEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcC--CCEECCEEEEE
Confidence 3689999999999999999999997 799999999999999999999999999999999999994 89999999999
Q ss_pred ecCCCCCCCCC
Q 001183 83 SETHSDIVPRP 93 (1131)
Q Consensus 83 ~~a~~~i~~~~ 93 (1131)
..|.+..-++|
T Consensus 100 ~~a~~~~~~~~ 110 (115)
T 2cpz_A 100 QLKRSKNDSKS 110 (115)
T ss_dssp ECCCCSCCCCC
T ss_pred EEcCCCCcCCC
Confidence 99988765433
No 26
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.6e-14 Score=133.09 Aligned_cols=80 Identities=18% Similarity=0.283 Sum_probs=75.7
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||+|||+.+++++|+++|+.+ |.|.+|+|..++.||++||||||+|.+.++|++|+..+ ||..++|+.|+|
T Consensus 15 ~~~l~v~nlp~~~t~~~l~~~f~~~---G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~v 89 (95)
T 2cqc_A 15 NCCLGVFGLSLYTTERDLREVFSKY---GPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA--NGMELDGRRIRV 89 (95)
T ss_dssp GGCEEEESCCSSCCHHHHHHHHHTT---SCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHH--TTEEETTEEEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhc---CCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHh--CCCEECCEEEEE
Confidence 4689999999999999999999997 79999999999999999999999999999999999999 489999999999
Q ss_pred ecCCC
Q 001183 83 SETHS 87 (1131)
Q Consensus 83 ~~a~~ 87 (1131)
..|..
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 98764
No 27
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1.1e-14 Score=135.59 Aligned_cols=83 Identities=13% Similarity=0.144 Sum_probs=78.1
Q ss_pred cccEEEEeCCCCcCCHHHHHHHHhhccCCceEE-EEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCce-
Q 001183 2 VLATVWVSNIPQTAIAKDLLLFLESKLGKNSVF-ALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQN- 79 (1131)
Q Consensus 2 m~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~-~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~- 79 (1131)
++++|||||||+.+++++|+++|+++ |.|. +|+|..|+.||++||||||+|.+.++|++|++.++ |..++|+.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~--g~~~~g~~~ 82 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATM---GETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKIN--GKPLPGATP 82 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHT---TCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTT--TSEESSCSS
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHh---CCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHc--CCccCCCCc
Confidence 46899999999999999999999998 7999 99999999999999999999999999999999994 89999999
Q ss_pred ---eEeecCCCCC
Q 001183 80 ---LKISETHSDI 89 (1131)
Q Consensus 80 ---L~V~~a~~~i 89 (1131)
|+|+.|.+.-
T Consensus 83 ~~~l~v~~a~~~~ 95 (99)
T 2div_A 83 AKRFKLNYATYSG 95 (99)
T ss_dssp CEECCEEETTCCS
T ss_pred ceeEEEeecCCCC
Confidence 9999987754
No 28
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.3e-14 Score=136.84 Aligned_cols=81 Identities=11% Similarity=0.056 Sum_probs=76.4
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
+++|||||||+.+++++|+++|+.+ |.|.+|+|..++.||++||||||+|.+.++|++|+..++ |..++|+.|+|
T Consensus 23 ~~~l~V~nlp~~~t~~~l~~~f~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~--g~~~~g~~l~V 97 (106)
T 1p27_B 23 GWILFVTGVHEEATEEDIHDKFAEY---GEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLN--GQDLMGQPISV 97 (106)
T ss_dssp BEEEEEECCCTTCCHHHHHHHHGGG---SCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHT--TCBSSSSBCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcc---CCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhc--CCEECCcEEEE
Confidence 4689999999999999999999998 799999999999999999999999999999999999994 89999999999
Q ss_pred ecCCCC
Q 001183 83 SETHSD 88 (1131)
Q Consensus 83 ~~a~~~ 88 (1131)
..|.+.
T Consensus 98 ~~a~~~ 103 (106)
T 1p27_B 98 DWCFVR 103 (106)
T ss_dssp EESEES
T ss_pred EeecCC
Confidence 988663
No 29
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1e-14 Score=134.98 Aligned_cols=83 Identities=14% Similarity=0.183 Sum_probs=78.2
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEE-EEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeE
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFAL-EIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLK 81 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~-~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~ 81 (1131)
.++|||+|||+.+|+++|+++|+++ |.|.++ +|..|+.+|++||||||+|++.++|++|+..+ |+..++|+.|+
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~ 79 (96)
T 1x5t_A 5 SSGIFIGNLDPEIDEKLLYDTFSAF---GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAM--NGQYLCNRPIT 79 (96)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTT---SCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTT--TTCEETTEECE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHc--CCCEECCEEEE
Confidence 5789999999999999999999997 799999 99999999999999999999999999999999 48999999999
Q ss_pred eecCCCCCC
Q 001183 82 ISETHSDIV 90 (1131)
Q Consensus 82 V~~a~~~i~ 90 (1131)
|..|.+..-
T Consensus 80 v~~a~~~~~ 88 (96)
T 1x5t_A 80 VSYAFKKDS 88 (96)
T ss_dssp EEESCCCCC
T ss_pred EEEecccCC
Confidence 999987654
No 30
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.7e-14 Score=138.42 Aligned_cols=88 Identities=19% Similarity=0.301 Sum_probs=80.9
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||+|||+.+|+++|+++|+++ |.|..|+|..++.||++||||||+|.+.++|++|+..++ + .++|+.|+|
T Consensus 17 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~--~-~~~g~~l~V 90 (116)
T 2cqd_A 17 FTKIFVGGLPYHTTDASLRKYFEGF---GDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN--P-IIDGRKANV 90 (116)
T ss_dssp SSEEEEECCCSSCCHHHHHHHHHTT---SCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSS--C-EETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC---CCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCC--C-cCCCEEEEE
Confidence 4689999999999999999999997 799999999999999999999999999999999999995 6 899999999
Q ss_pred ecCCCCCCCCCCCC
Q 001183 83 SETHSDIVPRPVKA 96 (1131)
Q Consensus 83 ~~a~~~i~~~~~~~ 96 (1131)
..|....-||+...
T Consensus 91 ~~a~~~~~~~~~~~ 104 (116)
T 2cqd_A 91 NLAYLGAKPRSLQT 104 (116)
T ss_dssp EESTTTCCCCCCCC
T ss_pred EEcccCCCccccCC
Confidence 99988776665443
No 31
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.54 E-value=2.5e-14 Score=136.98 Aligned_cols=83 Identities=13% Similarity=0.106 Sum_probs=78.6
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||+|||+.+++++|+++|+.+ |.|.+|+|..++.+|++||||||+|.+.++|++|+..++ +..++|+.|+|
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~--g~~~~g~~l~V 89 (115)
T 2dgo_A 15 HFHVFVGDLSPEITTEDIKAAFAPF---GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG--GQWLGGRQIRT 89 (115)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGG---SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTT--TCEETTEECEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhC--CCEECCEEEEE
Confidence 4689999999999999999999997 799999999999999999999999999999999999994 89999999999
Q ss_pred ecCCCCCC
Q 001183 83 SETHSDIV 90 (1131)
Q Consensus 83 ~~a~~~i~ 90 (1131)
..|.+..-
T Consensus 90 ~~a~~~~~ 97 (115)
T 2dgo_A 90 NWATRKPP 97 (115)
T ss_dssp EESSCCCC
T ss_pred EEccCCCC
Confidence 99988764
No 32
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.4e-14 Score=136.13 Aligned_cols=82 Identities=16% Similarity=0.132 Sum_probs=77.7
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||||||+.+++++|+++|+++ |.|..|+|..++.||++||||||+|.+.++|++|+..++ +..++|+.|+|
T Consensus 13 ~~~l~V~nLp~~~t~~~l~~~f~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~--g~~~~g~~l~V 87 (103)
T 2dnm_A 13 MITLKVDNLTYRTSPDSLRRVFEKY---GRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMD--GAELDGRELRV 87 (103)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTT---SCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHS--SCCBTTBCCEE
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcC--CCEECCcEEEE
Confidence 4689999999999999999999997 799999999999999999999999999999999999994 89999999999
Q ss_pred ecCCCCC
Q 001183 83 SETHSDI 89 (1131)
Q Consensus 83 ~~a~~~i 89 (1131)
..|....
T Consensus 88 ~~a~~~~ 94 (103)
T 2dnm_A 88 QVARYGR 94 (103)
T ss_dssp EECSSCC
T ss_pred EECCcCC
Confidence 9998765
No 33
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.9e-14 Score=135.40 Aligned_cols=83 Identities=17% Similarity=0.188 Sum_probs=78.2
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||||||+.+|+++|+++|+++ |.|..|+|..++.+|++||||||+|.+.++|++|+..++ +..++|+.|+|
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~--g~~~~g~~l~v 89 (105)
T 1x5u_A 15 DATVYVGGLDEKVSEPLLWELFLQA---GPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMD--MIKLYGKPIRV 89 (105)
T ss_dssp TTEEEEECCCTTCCHHHHHHHHHTT---SCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSS--SCBCSSCBCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhC--CCeECCeEEEE
Confidence 4689999999999999999999998 799999999999999999999999999999999999994 89999999999
Q ss_pred ecCCCCCC
Q 001183 83 SETHSDIV 90 (1131)
Q Consensus 83 ~~a~~~i~ 90 (1131)
..|.++.-
T Consensus 90 ~~a~~~~~ 97 (105)
T 1x5u_A 90 NKASAHNK 97 (105)
T ss_dssp EETTTTSC
T ss_pred EECCCCCc
Confidence 99987653
No 34
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.5e-14 Score=137.97 Aligned_cols=80 Identities=9% Similarity=0.107 Sum_probs=73.2
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||||||+++|++||+++|++| |.|.+|+|+.+ ||||||+|++.++|+.|++.++.++..++||.|+|
T Consensus 16 ~~~LfV~nLp~~vte~dL~~lF~~f---G~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 16 SRVIHIRKLPIDVTEGEVISLGLPF---GKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCEEEECSCCTTSCHHHHHHHHHHH---CCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 5799999999999999999999998 79999999964 79999999999999999998864578999999999
Q ss_pred ecCCCCCCC
Q 001183 83 SETHSDIVP 91 (1131)
Q Consensus 83 ~~a~~~i~~ 91 (1131)
+.|.+..+.
T Consensus 87 ~~A~~~~~~ 95 (105)
T 1sjq_A 87 QFSNHKELK 95 (105)
T ss_dssp CCCSSSSCC
T ss_pred EEcCCCCCC
Confidence 999887664
No 35
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.54 E-value=6e-15 Score=130.41 Aligned_cols=75 Identities=19% Similarity=0.284 Sum_probs=70.9
Q ss_pred EEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEeec
Q 001183 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKISE 84 (1131)
Q Consensus 5 ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V~~ 84 (1131)
+|||||||+++|+++|+++|+++ |.|.+|++..++.+|++||||||+|.++++|++|++ + ++..++|+.|+|..
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~--~~~~~~g~~l~v~~ 74 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQF---GKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-I--HFHEINNKMVECKK 74 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTT---SCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-S--SCCCSSSCCCEEEC
T ss_pred CEEEecCCCCCCHHHHHHHHHhc---CCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-C--CCCEECCEEEEEEe
Confidence 58999999999999999999997 799999999999999999999999999999999998 6 48999999999986
Q ss_pred C
Q 001183 85 T 85 (1131)
Q Consensus 85 a 85 (1131)
|
T Consensus 75 A 75 (75)
T 2mss_A 75 A 75 (75)
T ss_dssp C
T ss_pred C
Confidence 5
No 36
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.4e-14 Score=133.19 Aligned_cols=81 Identities=22% Similarity=0.134 Sum_probs=74.8
Q ss_pred ccEEEEeCCCCcCCHHHHH----HHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCc
Q 001183 3 LATVWVSNIPQTAIAKDLL----LFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQ 78 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~----~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr 78 (1131)
.++|||||||+.+++++|+ ++|+++ |.|.+|+|..|+.+ ||||||+|++.++|++|++.+ ||..++||
T Consensus 9 ~~~l~V~nL~~~~~~~~l~~~l~~~F~~~---G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l--~g~~~~gr 80 (96)
T 2dgx_A 9 GADVQVSNIDYRLSRKELQQLLQEAFARH---GKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSL--HRYKIGSK 80 (96)
T ss_dssp CEEEEEESCCTTSCHHHHHHHHHHHHHHH---SCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHH--TTEEETTE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhcccc---CcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHh--CCCEECCe
Confidence 4689999999999999999 999998 79999999999976 999999999999999999999 48999999
Q ss_pred eeEeecCCCCCCC
Q 001183 79 NLKISETHSDIVP 91 (1131)
Q Consensus 79 ~L~V~~a~~~i~~ 91 (1131)
.|+|+.|.+..-+
T Consensus 81 ~l~V~~a~~~~~~ 93 (96)
T 2dgx_A 81 KILVSLATGASGP 93 (96)
T ss_dssp EEEEEECCCSSCC
T ss_pred EEEEEEcCCCCCC
Confidence 9999999875543
No 37
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.53 E-value=1.6e-14 Score=137.25 Aligned_cols=82 Identities=12% Similarity=0.089 Sum_probs=76.9
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||||||+.+|+++|+++|+.+ |.|.+|+|..++.||++||||||+|.+.++|++|+..+ ||..++|+.|+|
T Consensus 26 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~V 100 (110)
T 1oo0_B 26 GWILFVTSIHEEAQEDEIQEKFCDY---GEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEAL--NGAEIMGQTIQV 100 (110)
T ss_dssp BEEEEEESCCTTCCHHHHHHHHGGG---SCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHH--TTCEETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHc--CCCEECCcEEEE
Confidence 4689999999999999999999998 79999999999999999999999999999999999999 489999999999
Q ss_pred ecCCCCC
Q 001183 83 SETHSDI 89 (1131)
Q Consensus 83 ~~a~~~i 89 (1131)
..|.+..
T Consensus 101 ~~a~~~~ 107 (110)
T 1oo0_B 101 DWCFVKG 107 (110)
T ss_dssp EESEESS
T ss_pred EEcccCC
Confidence 9887643
No 38
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=6.5e-15 Score=130.55 Aligned_cols=76 Identities=16% Similarity=0.188 Sum_probs=72.3
Q ss_pred cEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEee
Q 001183 4 ATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKIS 83 (1131)
Q Consensus 4 ~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V~ 83 (1131)
+||||||||+++++++|+++|+++ |.|.+|++..++.||++||||||+|.+.++|++|++.+ + ..++|+.|+|+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~---G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~--~-~~~~g~~l~v~ 74 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQF---GEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS--R-HELDSKTIDPK 74 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTT---SCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTT--T-CCCSSCCCEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhC--C-CccCCEEEEEE
Confidence 479999999999999999999997 79999999999999999999999999999999999998 4 89999999998
Q ss_pred cC
Q 001183 84 ET 85 (1131)
Q Consensus 84 ~a 85 (1131)
.|
T Consensus 75 ~a 76 (77)
T 1uaw_A 75 VA 76 (77)
T ss_dssp EC
T ss_pred ec
Confidence 76
No 39
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.53 E-value=4.2e-15 Score=136.08 Aligned_cols=81 Identities=20% Similarity=0.316 Sum_probs=73.3
Q ss_pred cEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEee
Q 001183 4 ATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKIS 83 (1131)
Q Consensus 4 ~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V~ 83 (1131)
++|||||||+++++++|+++|+++ |.|.+|+|..++.||++||||||+|.+.+ |+.|+..++ |..++|+.|+|+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~--g~~~~g~~l~V~ 75 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQF---GKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLD--NTDFMGRTIRVT 75 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHH---TCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSC--SSCCSSSSCSEE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhc---CCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhC--CCEECCeEEEEE
Confidence 689999999999999999999997 79999999999999999999999999999 999999994 899999999999
Q ss_pred cCCCCCC
Q 001183 84 ETHSDIV 90 (1131)
Q Consensus 84 ~a~~~i~ 90 (1131)
.|.+...
T Consensus 76 ~a~~~~~ 82 (90)
T 2ki2_A 76 EANPKKS 82 (90)
T ss_dssp EC-----
T ss_pred EcCCCCC
Confidence 9988764
No 40
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.53 E-value=1.8e-14 Score=137.36 Aligned_cols=80 Identities=14% Similarity=0.245 Sum_probs=76.0
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||||||+.+|+++|+++|+++ |.|.+|+|..++.+|++||||||+|.+.++|++|+..+ ||..++|+.|+|
T Consensus 26 ~~~l~V~nLp~~~te~~l~~~F~~~---G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l--~g~~i~g~~l~V 100 (108)
T 2jrs_A 26 PMRLYVGSLHFNITEDMLRGIFEPF---GRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL--NGFELAGRPMKV 100 (108)
T ss_dssp CEEEEEECCCSSCCHHHHHHHHTTT---SCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHH--TTCCSSSSCCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHc--CCCEECCEEEEE
Confidence 4689999999999999999999997 79999999999999999999999999999999999999 489999999999
Q ss_pred ecCCC
Q 001183 83 SETHS 87 (1131)
Q Consensus 83 ~~a~~ 87 (1131)
+.|.+
T Consensus 101 ~~a~~ 105 (108)
T 2jrs_A 101 GHVTE 105 (108)
T ss_dssp ECSCS
T ss_pred EEccc
Confidence 99876
No 41
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.53 E-value=1.4e-14 Score=131.53 Aligned_cols=80 Identities=14% Similarity=0.222 Sum_probs=75.4
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCC-ccceEEEEeCChHHHHHHHHhhcCCCceecCceeE
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWK-SRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLK 81 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~-sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~ 81 (1131)
.++|||||||+++|+++|+++|+++ |.|.+++|..++.+++ ++|||||+|.+.++|++|+..+ ||..++|+.|+
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~ 78 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTY---GKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHM--DGGQIDGQEIT 78 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTT---SCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHH--TTCEETTEECE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC---CCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHc--CCCeECCeEEE
Confidence 5789999999999999999999997 7999999999998877 9999999999999999999999 48999999999
Q ss_pred eecCCC
Q 001183 82 ISETHS 87 (1131)
Q Consensus 82 V~~a~~ 87 (1131)
|+.|.+
T Consensus 79 v~~a~~ 84 (88)
T 4a8x_A 79 ATAVLA 84 (88)
T ss_dssp EEEECC
T ss_pred EEECCC
Confidence 998855
No 42
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.5e-14 Score=135.43 Aligned_cols=84 Identities=14% Similarity=0.226 Sum_probs=78.6
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||+|||+.+|+++|+++|+++ |.|..|+|..++.++++||||||+|.+.++|++|+..++ +..++|+.|+|
T Consensus 12 ~~~l~v~nLp~~~t~~~l~~~f~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~--g~~~~g~~l~v 86 (102)
T 1x5s_A 12 EGKLFVGGLSFDTNEQSLEQVFSKY---GQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN--GKSVDGRQIRV 86 (102)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHHH---SCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHT--TCCTTSCCCEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhc---CCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhC--CCEECCeEEEE
Confidence 4689999999999999999999998 799999999999999999999999999999999999994 89999999999
Q ss_pred ecCCCCCCC
Q 001183 83 SETHSDIVP 91 (1131)
Q Consensus 83 ~~a~~~i~~ 91 (1131)
..|.+..-+
T Consensus 87 ~~a~~~~~~ 95 (102)
T 1x5s_A 87 DQAGKSSDN 95 (102)
T ss_dssp EEEECCCCC
T ss_pred EECCCCCCC
Confidence 999876643
No 43
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=2.8e-14 Score=135.49 Aligned_cols=84 Identities=15% Similarity=0.162 Sum_probs=78.3
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCC----CceecCc
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLND----KLVFNSQ 78 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~----~~~~~gr 78 (1131)
.++|||+|||+.+|+++|+++|+++ |.|..|+|..|+.||++||||||+|.+.++|++|++.++++ +..++|+
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 15 GKTVFIRNLSFDSEEEALGEVLQQF---GDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTT---SCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhc---CCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 4689999999999999999999998 79999999999999999999999999999999999999422 8999999
Q ss_pred eeEeecCCCCC
Q 001183 79 NLKISETHSDI 89 (1131)
Q Consensus 79 ~L~V~~a~~~i 89 (1131)
.|+|..|.+..
T Consensus 92 ~l~v~~a~~~~ 102 (111)
T 1x4h_A 92 QLKVDLAVTRD 102 (111)
T ss_dssp EEEEECCCCCC
T ss_pred EEEEEECCCCc
Confidence 99999998754
No 44
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=1.9e-14 Score=132.55 Aligned_cols=79 Identities=23% Similarity=0.318 Sum_probs=74.7
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||+|||+.+++++|+++|+++ |.|.+|+|..++.+|++||||||+|.+.++|++|+..+ |+..++|+.|+|
T Consensus 16 ~~~l~V~nlp~~~t~~~l~~~f~~~---G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~v 90 (94)
T 2e5h_A 16 KSTVYVSNLPFSLTNNDLYRIFSKY---GKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAI--NNKQLFGRVIKA 90 (94)
T ss_dssp TTSEEEESCCTTSCHHHHHHHTTTT---SCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHT--TTEEETTEEEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhc---CCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHc--CCCeeCCcEEEE
Confidence 4689999999999999999999997 79999999999999999999999999999999999999 489999999999
Q ss_pred ecCC
Q 001183 83 SETH 86 (1131)
Q Consensus 83 ~~a~ 86 (1131)
+-|+
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 8764
No 45
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.53 E-value=9.5e-15 Score=131.47 Aligned_cols=74 Identities=14% Similarity=0.174 Sum_probs=68.7
Q ss_pred ccEEEEeCCCCcC------CHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceec
Q 001183 3 LATVWVSNIPQTA------IAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFN 76 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~------t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~ 76 (1131)
+++|||||||+.+ |+++|+++|+++ |.|.+|+|. +.||++||||||+|++.++|++|+..+ ||..++
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~---G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~l--ng~~~~ 73 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKF---GKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNA--DGYKLD 73 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTT---CCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTS--SSCCCS
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhc---CCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHh--cCcccC
Confidence 4689999999999 779999999997 799999987 678999999999999999999999999 489999
Q ss_pred Cc-eeEee
Q 001183 77 SQ-NLKIS 83 (1131)
Q Consensus 77 gr-~L~V~ 83 (1131)
|+ .|+|+
T Consensus 74 g~~~l~V~ 81 (81)
T 2krb_A 74 KQHTFRVN 81 (81)
T ss_dssp SSSCCCCC
T ss_pred CceeEEeC
Confidence 99 99986
No 46
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.53 E-value=2.6e-14 Score=139.00 Aligned_cols=87 Identities=18% Similarity=0.115 Sum_probs=80.6
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
+++|||||||+.+++++|+++|+++ |.|.+|+|..++ +|++||||||+|.+.++|++|+..++ |..++|+.|+|
T Consensus 35 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~--g~~~~g~~l~V 108 (124)
T 2kt5_A 35 GAKLLVSNLDFGVSDADIQELFAEF---GTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYK--GVPLDGRPMDI 108 (124)
T ss_dssp CEEEEEESCCSSCCHHHHHHHHHTT---SCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHT--TEESSSCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcC--CCEECCcEEEE
Confidence 4689999999999999999999997 799999999999 99999999999999999999999994 89999999999
Q ss_pred ecCCCCCCCCCCC
Q 001183 83 SETHSDIVPRPVK 95 (1131)
Q Consensus 83 ~~a~~~i~~~~~~ 95 (1131)
+.|.....+.|..
T Consensus 109 ~~a~~~~~~~~~~ 121 (124)
T 2kt5_A 109 QLVASQIDLEHHH 121 (124)
T ss_dssp EEECCTTCCCCCC
T ss_pred EEeCCCCCCCCCc
Confidence 9999988755443
No 47
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2.6e-14 Score=135.39 Aligned_cols=86 Identities=13% Similarity=0.242 Sum_probs=78.2
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCce-EEEEEEe-ecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCcee
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNS-VFALEII-TDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNL 80 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~-V~~~~i~-~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L 80 (1131)
.++|||||||+.+|+++|+++|+++ |. |..|+|. .++.||++||||||+|.+.++|+.|+..+++++..++|+.|
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~f~~~---G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 8 NCRLFIGGIPKMKKREEILEEIAKV---TEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHH---STTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHh---cCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 4689999999999999999999997 67 9999999 89999999999999999999999999999533589999999
Q ss_pred EeecCCCCCCC
Q 001183 81 KISETHSDIVP 91 (1131)
Q Consensus 81 ~V~~a~~~i~~ 91 (1131)
+|..|.+..-+
T Consensus 85 ~V~~a~~~~~~ 95 (109)
T 2dis_A 85 AVDWAEPEIDV 95 (109)
T ss_dssp EEEESCSSCST
T ss_pred EEEEcCCCCCc
Confidence 99999876643
No 48
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=2.8e-14 Score=133.25 Aligned_cols=80 Identities=18% Similarity=0.285 Sum_probs=75.6
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||+|||+.+|+++|+++|+++ |.|.+|+|..++ +|++||||||+|.+.++|++|++.++ +..++|+.|+|
T Consensus 17 ~~~l~v~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~--g~~~~g~~l~v 90 (100)
T 2do4_A 17 KHKLFISGLPFSCTKEELEEICKAH---GTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMD--GMTIKENIIKV 90 (100)
T ss_dssp CSCEEEESCCTTCCHHHHHHHHTTT---SCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHT--TEESSSCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC---CCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhC--CCEECCEEEEE
Confidence 4689999999999999999999997 799999999999 99999999999999999999999994 89999999999
Q ss_pred ecCCCC
Q 001183 83 SETHSD 88 (1131)
Q Consensus 83 ~~a~~~ 88 (1131)
..|.+.
T Consensus 91 ~~a~~~ 96 (100)
T 2do4_A 91 AISNSG 96 (100)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 998764
No 49
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.52 E-value=3.2e-14 Score=133.87 Aligned_cols=85 Identities=14% Similarity=0.133 Sum_probs=77.8
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecC---ce
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNS---QN 79 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~g---r~ 79 (1131)
.++|||||||+.+++++|+++|+.+ |.|.+|+|..++ +|++||||||+|.+.++|++|++.++ +..+.| +.
T Consensus 15 ~~~l~v~nLp~~~t~~~l~~~F~~~---G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~--g~~~~gg~~~~ 88 (105)
T 2dnh_A 15 DRKLFVGMLNKQQSEEDVLRLFQPF---GVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALH--GSQTMPGASSS 88 (105)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTT---SCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHS--SCCCCTTCSSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHc--CCccCCCCCcc
Confidence 4789999999999999999999997 799999999999 89999999999999999999999995 777777 99
Q ss_pred eEeecCCCCCCCCC
Q 001183 80 LKISETHSDIVPRP 93 (1131)
Q Consensus 80 L~V~~a~~~i~~~~ 93 (1131)
|+|..|..+.-++|
T Consensus 89 l~V~~a~~~~~~~~ 102 (105)
T 2dnh_A 89 LVVKFADTDKESGP 102 (105)
T ss_dssp CEEEESCSSCCCSC
T ss_pred EEEEECccCcccCC
Confidence 99999998775443
No 50
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.3e-14 Score=136.14 Aligned_cols=82 Identities=22% Similarity=0.355 Sum_probs=77.4
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||||||+.+++++|+++|+.+ |.|.+|+|..++.+|++||||||+|.+.++|++|++.+ ||..++|+.|+|
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~---G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v 82 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEV---GPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL--NGREFSGRALRV 82 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTT---SCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHS--SSBSCSSSCBEE
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhc---CCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHh--CCCeeCCcEEEE
Confidence 3689999999999999999999997 79999999999999999999999999999999999999 489999999999
Q ss_pred ecCCCCC
Q 001183 83 SETHSDI 89 (1131)
Q Consensus 83 ~~a~~~i 89 (1131)
..|.+..
T Consensus 83 ~~a~~~~ 89 (104)
T 1p1t_A 83 DNAASEK 89 (104)
T ss_dssp EETTCTT
T ss_pred EeCCCcc
Confidence 9988755
No 51
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=2.8e-14 Score=134.02 Aligned_cols=82 Identities=18% Similarity=0.169 Sum_probs=76.7
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhh-ccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCce-ecCcee
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLES-KLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLV-FNSQNL 80 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~-~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~-~~gr~L 80 (1131)
..+|||||||+.+|+++|+++|++ + |.|.+|+|..++ +|++||||||+|.+.++|++|+..++ +.. ++|+.|
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~~---G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~--g~~~~~g~~l 82 (104)
T 2dhg_A 9 EYSLFVGDLTPDVDDGMLYEFFVKVY---PSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQ--GAVGLGSKPV 82 (104)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHHC---TTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTT--TCCSSSSSCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhC---CCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHcc--CCcccCCEeE
Confidence 468999999999999999999999 7 799999999999 99999999999999999999999994 788 999999
Q ss_pred EeecCCCCCC
Q 001183 81 KISETHSDIV 90 (1131)
Q Consensus 81 ~V~~a~~~i~ 90 (1131)
+|..|.+..-
T Consensus 83 ~v~~a~~~~~ 92 (104)
T 2dhg_A 83 RLSVAIPKAS 92 (104)
T ss_dssp CCCBCCCCCS
T ss_pred EEEEccCCCc
Confidence 9999977654
No 52
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=9e-15 Score=132.42 Aligned_cols=78 Identities=19% Similarity=0.227 Sum_probs=73.9
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
+++|||||||+.+++++|+++|+++ |.|.+|+|..++.+|++||||||+|.+.++|++|++.++ |..++|+.|+|
T Consensus 5 ~~~l~v~nlp~~~t~~~l~~~f~~~---G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~--g~~~~g~~~~~ 79 (85)
T 1x4e_A 5 SSGLYIRGLQPGTTDQDLVKLCQPY---GKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALK--ASGVQAQMAKQ 79 (85)
T ss_dssp CCEEEEESCCTTCCHHHHHTTSTTT---SCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHH--HHTCCEESCCS
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhc--CCeEeeEEEee
Confidence 5799999999999999999999998 799999999999999999999999999999999999995 89999999999
Q ss_pred ecC
Q 001183 83 SET 85 (1131)
Q Consensus 83 ~~a 85 (1131)
+.+
T Consensus 80 ~~~ 82 (85)
T 1x4e_A 80 SGP 82 (85)
T ss_dssp SCC
T ss_pred cCC
Confidence 864
No 53
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.52 E-value=4.1e-14 Score=132.99 Aligned_cols=81 Identities=17% Similarity=0.301 Sum_probs=75.8
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
..+|||||||+.+++++|+++|+++ | |.+|+|..++.||++||||||+|++.++|++|+ .+ |+..++|+.|+|
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~---g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l--~g~~~~g~~l~V 87 (103)
T 2dng_A 15 PYTAYVGNLPFNTVQGDIDAIFKDL---S-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TY--DGALLGDRSLRV 87 (103)
T ss_dssp CEEEEEESCCTTCCHHHHHHHTTTS---C-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GG--TTCEETTEECEE
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhC---C-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hh--CCCeECCeEEEE
Confidence 4689999999999999999999998 5 999999999999999999999999999999999 77 489999999999
Q ss_pred ecCCCCCC
Q 001183 83 SETHSDIV 90 (1131)
Q Consensus 83 ~~a~~~i~ 90 (1131)
..|.+..-
T Consensus 88 ~~a~~~~~ 95 (103)
T 2dng_A 88 DIAEGRKQ 95 (103)
T ss_dssp EECCCCCC
T ss_pred EEecCCCC
Confidence 99988654
No 54
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.51 E-value=3e-14 Score=136.01 Aligned_cols=81 Identities=15% Similarity=0.161 Sum_probs=75.4
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||||||+++|+++|+++|+.+ |.|.+|+|..++.||++||||||+|++.++|++|+..+ +..++|+.|+|
T Consensus 25 ~~~lfV~nLp~~~te~~L~~~F~~~---G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~---~~~l~g~~l~V 98 (109)
T 2rs2_A 25 GCKMFIGGLSWQTTQEGLREYFGQF---GEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS---RHELDSKTIDP 98 (109)
T ss_dssp -CCEEEESCCTTCCHHHHHHHHTTT---SCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS---CEEETTEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHcc---CCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC---CCcCCCEEEEE
Confidence 4689999999999999999999998 79999999999999999999999999999999999987 59999999999
Q ss_pred ecCCCCC
Q 001183 83 SETHSDI 89 (1131)
Q Consensus 83 ~~a~~~i 89 (1131)
..|.+..
T Consensus 99 ~~a~~~~ 105 (109)
T 2rs2_A 99 KVAFPRR 105 (109)
T ss_dssp EECCCCC
T ss_pred EEccCCC
Confidence 9987643
No 55
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.51 E-value=2.3e-14 Score=135.65 Aligned_cols=79 Identities=13% Similarity=0.156 Sum_probs=73.2
Q ss_pred cccEEEEeCCCCcC------CHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCcee
Q 001183 2 VLATVWVSNIPQTA------IAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVF 75 (1131)
Q Consensus 2 m~~ti~Vgnl~~~~------t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~ 75 (1131)
+.++|||||||+.+ |+++|+++|+++ |.|.+|+|. +.||++||||||+|++.++|++|+..+ ||..+
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~---G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l--~g~~~ 86 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKF---GKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNA--DGYKL 86 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGG---SCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHC--SSEEC
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcC---CCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHh--CCccc
Confidence 46799999999999 789999999997 799999998 678999999999999999999999999 48999
Q ss_pred cCc-eeEeecCCC
Q 001183 76 NSQ-NLKISETHS 87 (1131)
Q Consensus 76 ~gr-~L~V~~a~~ 87 (1131)
+|+ .|+|+.|.+
T Consensus 87 ~g~~~l~V~~a~~ 99 (105)
T 2nlw_A 87 DKQHTFRVNLFTD 99 (105)
T ss_dssp STTCEEEEECSCC
T ss_pred CCCceEEEEEcch
Confidence 999 999998864
No 56
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.51 E-value=2.2e-14 Score=135.19 Aligned_cols=82 Identities=17% Similarity=0.269 Sum_probs=76.6
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCcee---cCce
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVF---NSQN 79 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~---~gr~ 79 (1131)
.++|||||||+++|+++|+++|+++ |.|..|+|..|+.||++||||||+|.+.++|++|++.++ +..+ +|+.
T Consensus 13 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~--g~~~~~~~g~~ 87 (106)
T 2dgp_A 13 AIKLFIGQIPRNLDEKDLKPLFEEF---GKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALH--EQKTLPGMNRP 87 (106)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHHH---SCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHT--TTCCCTTCSSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhc--CCcccCCCCce
Confidence 4689999999999999999999998 799999999999999999999999999999999999995 7766 8999
Q ss_pred eEeecCCCCC
Q 001183 80 LKISETHSDI 89 (1131)
Q Consensus 80 L~V~~a~~~i 89 (1131)
|+|+.|....
T Consensus 88 l~v~~a~~~~ 97 (106)
T 2dgp_A 88 IQVKPADSES 97 (106)
T ss_dssp CEEEECCCCS
T ss_pred EEEEECCccc
Confidence 9999998765
No 57
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=4.4e-14 Score=133.25 Aligned_cols=84 Identities=18% Similarity=0.224 Sum_probs=78.2
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeec-CCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeE
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITD-RSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLK 81 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~d-r~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~ 81 (1131)
.++|||||||+.+|+++|+++|+.+ |.|.+|+|..+ +.+|++||||||+|.+.++|++|+..++ |+..++|+.|+
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-~~~~~~g~~l~ 90 (107)
T 2cph_A 15 TSKILVRNIPFQANQREIRELFSTF---GELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALC-HSTHLYGRRLV 90 (107)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTT---SCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHH-TCCBSSSCBCE
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHcc---CCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhc-cCCeECCCEEE
Confidence 4689999999999999999999998 79999999999 8999999999999999999999999993 28999999999
Q ss_pred eecCCCCCC
Q 001183 82 ISETHSDIV 90 (1131)
Q Consensus 82 V~~a~~~i~ 90 (1131)
|..|.++.-
T Consensus 91 v~~a~~~~~ 99 (107)
T 2cph_A 91 LEWADSEVT 99 (107)
T ss_dssp EEECCCCCC
T ss_pred EEeCCCCCC
Confidence 999988663
No 58
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=2.9e-14 Score=134.31 Aligned_cols=82 Identities=15% Similarity=0.248 Sum_probs=77.0
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||+|||+.+++++|+++|+++ |.|..|+|..++.||++||||||+|++.++|++|+.. + +..++|+.|+|
T Consensus 16 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~--~~~~~g~~l~V 89 (105)
T 2dh8_A 16 IGKLFVGGLDWSTTQETLRSYFSQY---GEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-R--PHTLDGRNIDP 89 (105)
T ss_dssp SSEECCBSCCTTCCHHHHHHHHHTT---SCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-C--SEEETTEEEBC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-C--CCeECCEEEEE
Confidence 4689999999999999999999997 7999999999999999999999999999999999998 4 89999999999
Q ss_pred ecCCCCCC
Q 001183 83 SETHSDIV 90 (1131)
Q Consensus 83 ~~a~~~i~ 90 (1131)
..|.+..-
T Consensus 90 ~~a~~~~~ 97 (105)
T 2dh8_A 90 KPCTPRGM 97 (105)
T ss_dssp CCSCCSSC
T ss_pred EEccCCCC
Confidence 99987653
No 59
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.51 E-value=3.5e-14 Score=130.67 Aligned_cols=75 Identities=12% Similarity=0.101 Sum_probs=69.8
Q ss_pred cccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeE
Q 001183 2 VLATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLK 81 (1131)
Q Consensus 2 m~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~ 81 (1131)
++.-||||||++.+|+++|+++|++| |+|.++++.. |||||||+|.++++|++|+.++| +..++||.|+
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~---G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln--~~~l~gr~I~ 74 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQH---GPLVSFHPYL------NQGIALCKYTTREEANKAQMALN--NCVLANTTIF 74 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHH---SCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHT--TEEETTEEEE
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhh---CCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhc--CCEECCcEEE
Confidence 46679999999999999999999998 7999999975 79999999999999999999994 8999999999
Q ss_pred eecCCC
Q 001183 82 ISETHS 87 (1131)
Q Consensus 82 V~~a~~ 87 (1131)
|+.|.+
T Consensus 75 V~~A~e 80 (89)
T 2wbr_A 75 AESPSE 80 (89)
T ss_dssp EECCCH
T ss_pred EEECCH
Confidence 999853
No 60
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=3.4e-14 Score=135.58 Aligned_cols=83 Identities=19% Similarity=0.234 Sum_probs=77.7
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEE--------EEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCce
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVF--------ALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLV 74 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~--------~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~ 74 (1131)
.++|||+|||+.+|+++|+++|+++ |.|. .|+|..++.||++||||||+|.+.++|++|++.+ |+..
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l--~g~~ 89 (113)
T 2cpe_A 15 NSAIYVQGLNDSVTLDDLADFFKQC---GVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWF--DGKD 89 (113)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHTTT---SCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHH--TTCE
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhc---CCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHc--CCCc
Confidence 4689999999999999999999998 7998 6999999999999999999999999999999999 4899
Q ss_pred ecCceeEeecCCCCCC
Q 001183 75 FNSQNLKISETHSDIV 90 (1131)
Q Consensus 75 ~~gr~L~V~~a~~~i~ 90 (1131)
++|+.|+|..|.+..-
T Consensus 90 ~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPP 105 (113)
T ss_dssp ETTEECEEECSSCCCC
T ss_pred cCCCEEEEEECCCCCC
Confidence 9999999999988653
No 61
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.51 E-value=4.1e-14 Score=136.65 Aligned_cols=82 Identities=15% Similarity=0.225 Sum_probs=77.2
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||||||+++|+++|+++|+++ |.|.+|+|..++ +|++||||||+|++.++|++|+..+ ||..++|+.|+|
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l--~g~~~~g~~l~V 80 (116)
T 2fy1_A 7 PGKLFIGGLNRETNEKMLKAVFGKH---GPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDM--NGKSLHGKAIKV 80 (116)
T ss_dssp CCEEEEECCTTTCCHHHHHHHHHTS---SCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHC--SSCBCSSSBCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHh--CCCEECCEEEEE
Confidence 4789999999999999999999997 799999999999 9999999999999999999999999 489999999999
Q ss_pred ecCCCCCC
Q 001183 83 SETHSDIV 90 (1131)
Q Consensus 83 ~~a~~~i~ 90 (1131)
..|.+...
T Consensus 81 ~~a~~~~~ 88 (116)
T 2fy1_A 81 EQAKKPSF 88 (116)
T ss_dssp EECCCSSC
T ss_pred EECCCCCC
Confidence 99987663
No 62
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.50 E-value=2.8e-14 Score=137.25 Aligned_cols=79 Identities=18% Similarity=0.237 Sum_probs=74.3
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||||||+++++++|+++|+++ |.|.+|+|..++.+|++||||||+|.+.++|++|++.+ ||..++|+.|+|
T Consensus 40 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~V 114 (118)
T 2khc_A 40 GCNLFIYHLPQEFTDTDLASTFLPF---GNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAM--NGFQVGTKRLKV 114 (118)
T ss_dssp SEEEEEECSCTTCCHHHHHHHTTTS---CEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHC--CCCEETTEECCE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHc--CCCEECCEEEEE
Confidence 4689999999999999999999997 79999999999999999999999999999999999999 489999999999
Q ss_pred ecCC
Q 001183 83 SETH 86 (1131)
Q Consensus 83 ~~a~ 86 (1131)
..++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 8763
No 63
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.50 E-value=5.6e-14 Score=139.01 Aligned_cols=83 Identities=25% Similarity=0.285 Sum_probs=78.6
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||||||+++|+++|+++|+.+ |.|.+|+|+.++.||++||||||+|.+.++|++|++.+ ||..++|+.|+|
T Consensus 42 ~~~l~V~nLp~~~~~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v 116 (139)
T 1u6f_A 42 LRNLMVNYIPTTVDEVQLRQLFERY---GPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGL--NGFNILNKRLKV 116 (139)
T ss_dssp TSEEEEESCSTTCCHHHHHHHHHHH---SCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHT--TTEECSSCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHh--CCCEECCeEEEE
Confidence 4799999999999999999999998 79999999999999999999999999999999999999 489999999999
Q ss_pred ecCCCCCC
Q 001183 83 SETHSDIV 90 (1131)
Q Consensus 83 ~~a~~~i~ 90 (1131)
..|.+..-
T Consensus 117 ~~a~~~~~ 124 (139)
T 1u6f_A 117 ALAASGHQ 124 (139)
T ss_dssp EESSCCCC
T ss_pred EECCCCCC
Confidence 99988764
No 64
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.50 E-value=1.6e-14 Score=133.41 Aligned_cols=79 Identities=19% Similarity=0.146 Sum_probs=74.6
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||+|||+.+|++||+++|+++ |.|..++++.++.+|++||||||+|.++++|++|+..+ |+..++||.|+|
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l--~g~~~~gr~l~v 89 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGY---QVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDL--NDRPIGSRKVKL 89 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTS---CBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHh--CCCeECCcEEEE
Confidence 3689999999999999999999997 79999999999999999999999999999999999999 489999999999
Q ss_pred ecCC
Q 001183 83 SETH 86 (1131)
Q Consensus 83 ~~a~ 86 (1131)
..+.
T Consensus 90 ~~a~ 93 (95)
T 2ek1_A 90 SGPS 93 (95)
T ss_dssp ECCC
T ss_pred Eecc
Confidence 9765
No 65
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.50 E-value=6.9e-14 Score=129.06 Aligned_cols=79 Identities=22% Similarity=0.203 Sum_probs=74.0
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||+|||+.+++++|+++|+++ |.|.+|+|..++. |++||||||+|.++++|++|+..++ +..++|+.|+|
T Consensus 16 ~~~l~v~nlp~~~~~~~l~~~F~~~---G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~--g~~~~g~~l~V 89 (95)
T 2ywk_A 16 DRTVFVGNLEARVREEILYELFLQA---GPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLN--GIRLYGRPINV 89 (95)
T ss_dssp GGEEEEECCCTTCCHHHHHHHHGGG---SCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHT--TCEETTEECEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhc---CCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhC--CCEECCCEEEE
Confidence 4789999999999999999999997 7999999999995 9999999999999999999999994 89999999999
Q ss_pred ecCCC
Q 001183 83 SETHS 87 (1131)
Q Consensus 83 ~~a~~ 87 (1131)
..|..
T Consensus 90 ~~a~~ 94 (95)
T 2ywk_A 90 SGPSS 94 (95)
T ss_dssp ECCCC
T ss_pred EEcCC
Confidence 98753
No 66
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=4.5e-14 Score=132.93 Aligned_cols=80 Identities=18% Similarity=0.270 Sum_probs=75.3
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCC-CCccceEEEEeCChHHHHHHHHhhcCCCceecCceeE
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSN-WKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLK 81 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~t-g~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~ 81 (1131)
..+|||+|||+.+|+++|+++|+.+ | |.+|+|..++.| |++||||||+|++.++|++|+ .++ +..++|+.|+
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~---G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~--g~~~~g~~l~ 87 (104)
T 1wi8_A 15 PYTAFLGNLPYDVTEESIKEFFRGL---N-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLN--EESLGNKRIR 87 (104)
T ss_dssp CEEEEEESCCSSCCHHHHHHHTTTS---C-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGG--TCEETTEECE
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHC---C-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcC--CCEeCCcEEE
Confidence 4689999999999999999999998 7 999999999998 999999999999999999999 774 8999999999
Q ss_pred eecCCCCC
Q 001183 82 ISETHSDI 89 (1131)
Q Consensus 82 V~~a~~~i 89 (1131)
|..|.+..
T Consensus 88 V~~a~~~~ 95 (104)
T 1wi8_A 88 VDVADQAQ 95 (104)
T ss_dssp EEECCCCC
T ss_pred EEEccCCC
Confidence 99998765
No 67
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.50 E-value=1.3e-14 Score=128.18 Aligned_cols=75 Identities=13% Similarity=0.160 Sum_probs=70.6
Q ss_pred EEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEeec
Q 001183 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKISE 84 (1131)
Q Consensus 5 ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V~~ 84 (1131)
||||||||+.+|+++|+++|+++ |.|.+|++..++.||++||||||+|.++++|++|+++ ++..++|+.|+|+.
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~---~~~~~~g~~l~v~~ 74 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGF---GEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK---KYHNVGLSKCEIKV 74 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHH---SCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT---SSCCBTTBCCCEEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh---CCCeECCEEEEEEE
Confidence 69999999999999999999997 7999999999999999999999999999999999996 37889999999986
Q ss_pred C
Q 001183 85 T 85 (1131)
Q Consensus 85 a 85 (1131)
|
T Consensus 75 a 75 (75)
T 1iqt_A 75 A 75 (75)
T ss_dssp C
T ss_pred C
Confidence 5
No 68
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=3.4e-14 Score=135.94 Aligned_cols=80 Identities=20% Similarity=0.271 Sum_probs=74.9
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||||||+.+++++|+++|+++ |.|..|+|+.|+.||++||||||+|.+.++|++|+ .+ |+..++|+.|+|
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l--~g~~~~g~~l~V 98 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAV---GKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GL--TGQRLLGVPIIV 98 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTT---SCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HH--TTEEETTEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC---CCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-Hc--CCCEeCCeEEEE
Confidence 4689999999999999999999997 79999999999999999999999999999999999 88 489999999999
Q ss_pred ecCCCC
Q 001183 83 SETHSD 88 (1131)
Q Consensus 83 ~~a~~~ 88 (1131)
..|.+.
T Consensus 99 ~~a~~~ 104 (114)
T 2cq4_A 99 QASQAE 104 (114)
T ss_dssp EEHHHH
T ss_pred EecCCC
Confidence 987653
No 69
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.50 E-value=1.8e-14 Score=135.12 Aligned_cols=78 Identities=15% Similarity=0.283 Sum_probs=73.2
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecC-CCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeE
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDR-SNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLK 81 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr-~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~ 81 (1131)
.++|||||||+++++++|+++|+++ | |.+|+|..++ .+|++||||||+|.+.++|++|+ .+ ||..++|+.|+
T Consensus 19 ~~~l~V~nLp~~~t~~~l~~~F~~~---G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l--~g~~~~g~~l~ 91 (100)
T 2j76_E 19 PYTAFLGNLPYDVTEESIKEFFRGL---N-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SL--NEESLGNRRIR 91 (100)
T ss_dssp -CEEEESCCSSCCSSSHHHHHSCSS---C-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HT--TTCCBTTBCCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhc---C-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hc--CCCEECCeEEE
Confidence 5799999999999999999999998 8 9999999999 69999999999999999999999 77 48999999999
Q ss_pred eecCCC
Q 001183 82 ISETHS 87 (1131)
Q Consensus 82 V~~a~~ 87 (1131)
|..|.+
T Consensus 92 V~~a~~ 97 (100)
T 2j76_E 92 VDVADQ 97 (100)
T ss_dssp CEECCC
T ss_pred EEeccC
Confidence 999876
No 70
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=5e-14 Score=132.24 Aligned_cols=81 Identities=15% Similarity=0.191 Sum_probs=76.2
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||+|||+.+|+++|+++|+++ |.|.+|+|..+ +|++||||||+|.+.++|++|+..++ +..++|+.|+|
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~--g~~~~g~~l~V 87 (103)
T 2d9p_A 15 VVNLYVKNLDDGIDDERLRKAFSPF---GTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMN--GRIVATKPLYV 87 (103)
T ss_dssp CCCEEEECCCTTCCHHHHHHTTTTT---SCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHT--TCBSSSSBCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhC--CCEeCCcEEEE
Confidence 4689999999999999999999997 79999999998 89999999999999999999999994 89999999999
Q ss_pred ecCCCCCC
Q 001183 83 SETHSDIV 90 (1131)
Q Consensus 83 ~~a~~~i~ 90 (1131)
..|.+..-
T Consensus 88 ~~a~~~~~ 95 (103)
T 2d9p_A 88 ALAQRKEE 95 (103)
T ss_dssp EECSSCCC
T ss_pred EEeccccc
Confidence 99988664
No 71
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.49 E-value=4.9e-14 Score=136.75 Aligned_cols=81 Identities=21% Similarity=0.341 Sum_probs=76.1
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||||||+.+|+++|+++|+++ |.|.+|+|..++.+|++||||||+|.+.++|++|+ .+ ||..++|+.|+|
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l--~g~~~~g~~l~V 109 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSC---GSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AM--DETVFRGRTIKV 109 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTT---SCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TT--TTCEETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hc--CCCeECCeEEEE
Confidence 3689999999999999999999998 79999999999999999999999999999999999 67 489999999999
Q ss_pred ecCCCCC
Q 001183 83 SETHSDI 89 (1131)
Q Consensus 83 ~~a~~~i 89 (1131)
..+.++.
T Consensus 110 ~~a~~~~ 116 (124)
T 2jwn_A 110 LPKRTNM 116 (124)
T ss_dssp EESSCCC
T ss_pred EECCCCC
Confidence 9998765
No 72
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.49 E-value=5e-14 Score=137.06 Aligned_cols=83 Identities=11% Similarity=0.050 Sum_probs=77.9
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
..+|||+|||+.+|+++|+++|+.+ |.|..|+|+.++.||.++|||||+|.+.++|++|+..+ ||..++|+.|+|
T Consensus 22 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v 96 (126)
T 3ex7_B 22 GWILFVTGVHEEATEEDIHDKFAEY---GEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL--NGQDLMGQPISV 96 (126)
T ss_dssp SEEEEEESCCTTCCHHHHHHHHHTT---SCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHH--TTCBSSSSBCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHh--CCCeeCCeEEEE
Confidence 4689999999999999999999997 79999999999999999999999999999999999999 489999999999
Q ss_pred ecCCCCCC
Q 001183 83 SETHSDIV 90 (1131)
Q Consensus 83 ~~a~~~i~ 90 (1131)
..|....-
T Consensus 97 ~~a~~~~~ 104 (126)
T 3ex7_B 97 DWCFVRGP 104 (126)
T ss_dssp EESEESSS
T ss_pred EEecCCCC
Confidence 99977654
No 73
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=1.8e-14 Score=133.89 Aligned_cols=80 Identities=18% Similarity=0.116 Sum_probs=75.4
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||+|||+.+++++|+++|+++ |.|..++++.++.+|++||||||+|++.++|++|++.+ |+..++|+.|+|
T Consensus 15 ~~~l~v~nLp~~~t~~~l~~~F~~~---G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l--~g~~~~g~~l~V 89 (98)
T 2cqp_A 15 PTIIKVQNMPFTVSIDEILDFFYGY---QVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDL--NDRPIGSRKVKL 89 (98)
T ss_dssp SEEEEEESCCTTCCHHHHHHHTTTS---CCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHT--TTCEETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHc---CCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHh--CCCeeCCeEEEE
Confidence 3689999999999999999999998 79999999999999999999999999999999999999 489999999999
Q ss_pred ecCCC
Q 001183 83 SETHS 87 (1131)
Q Consensus 83 ~~a~~ 87 (1131)
..+..
T Consensus 90 ~~a~~ 94 (98)
T 2cqp_A 90 VLGSG 94 (98)
T ss_dssp EESSC
T ss_pred EEcCC
Confidence 98865
No 74
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=2.5e-14 Score=135.27 Aligned_cols=81 Identities=16% Similarity=0.194 Sum_probs=73.4
Q ss_pred cccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeE
Q 001183 2 VLATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLK 81 (1131)
Q Consensus 2 m~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~ 81 (1131)
...+|||+|||+++|++||+++|+++ |.| +|+|+.|+ +|++||||||+|+++++|++|++ + |+..++||.|+
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~---G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~--~~~~~~gr~i~ 85 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPL---NPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-K--DKANMQHRYVE 85 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSC---CCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-T--SSCCSSSSCCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHc---Cce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-h--CCCeECCcEEE
Confidence 45789999999999999999999997 666 99999999 99999999999999999999995 4 48999999999
Q ss_pred eecCCCCCC
Q 001183 82 ISETHSDIV 90 (1131)
Q Consensus 82 V~~a~~~i~ 90 (1131)
|..+.+..-
T Consensus 86 V~~~~~~~~ 94 (102)
T 1wez_A 86 LFLNSTAGT 94 (102)
T ss_dssp EEEECCCCC
T ss_pred EEECCCCCC
Confidence 998877553
No 75
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.49 E-value=1.5e-14 Score=142.41 Aligned_cols=80 Identities=13% Similarity=0.234 Sum_probs=75.1
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEE--EEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCc----eec
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFA--LEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKL----VFN 76 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~--~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~----~~~ 76 (1131)
.++|||||||+.+|+++|+++|+.+ |.|.. |+|+.|+.||++||||||+|++. +|.+|+..++ |. .++
T Consensus 23 ~~~lfV~nL~~~~te~~L~~~F~~~---G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~--g~~~~~~~~ 96 (131)
T 2m2b_A 23 NDTIILRNLNPHSTMDSILGALAPY---AVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQ--ALHPPLTID 96 (131)
T ss_dssp CCEEEECSCCTTCCSHHHHHHHGGG---CCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHT--TCCCSCCGG
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHh---CCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhc--CCCCCccCC
Confidence 4689999999999999999999998 79977 99999999999999999999999 9999999995 78 999
Q ss_pred CceeEeecCCCC
Q 001183 77 SQNLKISETHSD 88 (1131)
Q Consensus 77 gr~L~V~~a~~~ 88 (1131)
||.|+|..|.+.
T Consensus 97 gr~l~V~~a~~~ 108 (131)
T 2m2b_A 97 GKTINVEFAKGS 108 (131)
T ss_dssp GCCCCCEECCCS
T ss_pred CEEEEEEECCCC
Confidence 999999998764
No 76
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=1.4e-13 Score=129.22 Aligned_cols=84 Identities=12% Similarity=0.122 Sum_probs=76.2
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||||||+.+++++|+++|+.+ |.|.+|+|..++. .+||||||+|.+.++|++|+..+ ++..++|+.|+|
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~V 87 (103)
T 2cqi_A 15 PRTLYVGNLSRDVTEVLILQLFSQI---GPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAM--NGRKILGKEVKV 87 (103)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHH---SCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHH--TTEEETTEEEEE
T ss_pred CCEEEEeCCCccCCHHHHHHHHHhc---CCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHh--CCCCcCCCeEEE
Confidence 4789999999999999999999998 7999999999974 47999999999999999999999 489999999999
Q ss_pred ecCCCCCCCCC
Q 001183 83 SETHSDIVPRP 93 (1131)
Q Consensus 83 ~~a~~~i~~~~ 93 (1131)
..|.+..-+++
T Consensus 88 ~~a~~~~~~~~ 98 (103)
T 2cqi_A 88 NWATTPSSQKS 98 (103)
T ss_dssp EECCCTTCCCC
T ss_pred EECCCCccccc
Confidence 99988665443
No 77
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.49 E-value=8e-14 Score=127.89 Aligned_cols=81 Identities=20% Similarity=0.238 Sum_probs=75.0
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
..+|||+|||+.+++++|+++|+++ |.|..|+|..+ +|++||||||+|.+.++|++|+..++ +..++|+.|+|
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~f~~~---G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~--g~~~~g~~l~v 80 (92)
T 2dgv_A 8 ACQIFVRNLPFDFTWKMLKDKFNEC---GHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMN--GMKLSGREIDV 80 (92)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTT---SCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHT--TCCBTTBCCCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhC--CCEECCcEEEE
Confidence 4689999999999999999999997 79999999984 79999999999999999999999994 89999999999
Q ss_pred ecCCCCCC
Q 001183 83 SETHSDIV 90 (1131)
Q Consensus 83 ~~a~~~i~ 90 (1131)
..+.+..-
T Consensus 81 ~~a~~~~~ 88 (92)
T 2dgv_A 81 RIDRNASG 88 (92)
T ss_dssp EECSCCSS
T ss_pred EEcCCCCC
Confidence 99987654
No 78
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.49 E-value=7e-14 Score=141.14 Aligned_cols=82 Identities=21% Similarity=0.225 Sum_probs=77.6
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
..+|||||||+++|+++|+++|+.+ |.|.+|+|..|+.||++||||||+|.+.++|++|+..+ ||..++|+.|+|
T Consensus 70 ~~~l~v~nl~~~~~~~~l~~~F~~~---G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v 144 (158)
T 2kn4_A 70 MTSLKVDNLTYRTSPDTLRRVFEKY---GRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM--DGAVLDGRELRV 144 (158)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHH---SCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHS--TTEESSSSEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHh--CCCEECCeEEEE
Confidence 4689999999999999999999998 79999999999999999999999999999999999999 489999999999
Q ss_pred ecCCCCC
Q 001183 83 SETHSDI 89 (1131)
Q Consensus 83 ~~a~~~i 89 (1131)
..|.+..
T Consensus 145 ~~a~~~~ 151 (158)
T 2kn4_A 145 QMARYGR 151 (158)
T ss_dssp EEECCSS
T ss_pred EECCCCC
Confidence 9998754
No 79
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.48 E-value=4.9e-14 Score=138.83 Aligned_cols=81 Identities=15% Similarity=0.235 Sum_probs=76.5
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||+|||+.+++++|+++|+.+ |.|..|+|..|+.||++||||||+|++.++|++|+..++ |..++|+.|+|
T Consensus 46 ~~~l~V~nLp~~~te~~L~~~F~~~---G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~ln--g~~i~g~~l~V 120 (129)
T 2kxn_B 46 NCCLGVFGLSLYTTERDLREVFSKY---GPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERAN--GMELDGRRIRV 120 (129)
T ss_dssp SSCBCEETCTTSCCHHHHHHHHTTT---SCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHT--TCCSSSSCCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhC--CCEECCEEEEE
Confidence 4689999999999999999999997 799999999999999999999999999999999999994 89999999999
Q ss_pred ecCCCC
Q 001183 83 SETHSD 88 (1131)
Q Consensus 83 ~~a~~~ 88 (1131)
..|.++
T Consensus 121 ~~a~~~ 126 (129)
T 2kxn_B 121 DFSITK 126 (129)
T ss_dssp SCCSSS
T ss_pred EEecCC
Confidence 998763
No 80
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.48 E-value=8.2e-14 Score=131.52 Aligned_cols=78 Identities=17% Similarity=0.149 Sum_probs=73.8
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
..+|||+|||+.+|+++|+++|+.+ |.|.+|+|..++ +|++||||||+|.+.++|++|+..+ ++..++|+.|+|
T Consensus 29 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~V 102 (107)
T 3ulh_A 29 GGKLLVSNLDFGVSDADIQELFAEF---GTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQY--NGVPLDGRPMNI 102 (107)
T ss_dssp SEEEEEESCCTTCCHHHHHHHHHTT---SCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHh--CCCEeCCcEEEE
Confidence 4689999999999999999999997 799999999999 9999999999999999999999999 489999999999
Q ss_pred ecCC
Q 001183 83 SETH 86 (1131)
Q Consensus 83 ~~a~ 86 (1131)
+.|.
T Consensus 103 ~~a~ 106 (107)
T 3ulh_A 103 QLVT 106 (107)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 8764
No 81
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=8e-14 Score=133.78 Aligned_cols=82 Identities=13% Similarity=0.188 Sum_probs=76.6
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||+|||+.+|+++|+++|+.+ |.|..|+|..++.||++||||||+|.+.++|++|+.. + +..++|+.|+|
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~---G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~--~~~~~g~~l~V 100 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQW---GKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-R--PHSIDGRVVEP 100 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSS---CCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-C--SEEETTEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-C--CcEECCEEEEE
Confidence 3689999999999999999999997 7999999999999999999999999999999999998 4 89999999999
Q ss_pred ecCCCCCC
Q 001183 83 SETHSDIV 90 (1131)
Q Consensus 83 ~~a~~~i~ 90 (1131)
..|.+..-
T Consensus 101 ~~a~~~~~ 108 (116)
T 1x4b_A 101 KRAVAREE 108 (116)
T ss_dssp ECCSSCCC
T ss_pred EECCCCcc
Confidence 99987653
No 82
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=6.6e-14 Score=132.31 Aligned_cols=81 Identities=20% Similarity=0.206 Sum_probs=73.8
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEE-EEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeE
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFA-LEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLK 81 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~-~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~ 81 (1131)
..+|||||||+++|++||+++|+++ |.|.. ++|..+ .||++||||||+|+++++|++|+.. + +..++||.|+
T Consensus 15 ~~~l~V~nLp~~~te~~l~~~F~~~---G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~--~~~~~gr~i~ 87 (104)
T 1wg5_A 15 DGFVRLRGLPFGCSKEEIVQFFSGL---EIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-H--KERIGHRYIE 87 (104)
T ss_dssp CCEEEEESCCTTCCHHHHHHHTTTC---CEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-T--TCCSSSSCCE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-C--cchhCCcEEE
Confidence 4689999999999999999999997 69987 999998 6999999999999999999999997 4 7999999999
Q ss_pred eecCCCCCC
Q 001183 82 ISETHSDIV 90 (1131)
Q Consensus 82 V~~a~~~i~ 90 (1131)
|..+.+.-+
T Consensus 88 v~~~~~~~~ 96 (104)
T 1wg5_A 88 IFKSSRAEV 96 (104)
T ss_dssp EEEECTTTS
T ss_pred EEECCHHHH
Confidence 998876544
No 83
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.47 E-value=8.7e-14 Score=137.20 Aligned_cols=78 Identities=14% Similarity=0.151 Sum_probs=73.5
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||||||+.+|+++|+++|+++ |.|.+++|..++.||++||||||+|++.++|++|++.+ ||..++|+.|+|
T Consensus 63 ~~~l~v~nlp~~~~~~~l~~~f~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v 137 (140)
T 2ku7_A 63 KRVLYVGGLAEEVDDKVLHAAFIPF---GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM--NESELFGRTIRV 137 (140)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHGGG---SCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHS--TEEEETTEEEEE
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHhc---CCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHh--CCCEECCEEEEE
Confidence 4689999999999999999999998 79999999999999999999999999999999999999 489999999999
Q ss_pred ecC
Q 001183 83 SET 85 (1131)
Q Consensus 83 ~~a 85 (1131)
+.|
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 865
No 84
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=1.7e-13 Score=130.90 Aligned_cols=81 Identities=22% Similarity=0.266 Sum_probs=75.5
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||+|||+.+++++|+++|+++ |.|..|+|..++ +|++||||||+|.+.++|++|+..+ |+..++|+.|+|
T Consensus 15 ~~~l~V~nlp~~~~~~~l~~~f~~~---G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v 88 (114)
T 2do0_A 15 GSTVFVANLDYKVGWKKLKEVFSMA---GVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMF--NGQLLFDRPMHV 88 (114)
T ss_dssp CSCEEEESCCTTCCHHHHHHHHTTT---SCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHh--CCCEeCCCEEEE
Confidence 5789999999999999999999997 799999999998 6999999999999999999999999 489999999999
Q ss_pred ecCCCCC
Q 001183 83 SETHSDI 89 (1131)
Q Consensus 83 ~~a~~~i 89 (1131)
..+....
T Consensus 89 ~~a~~~~ 95 (114)
T 2do0_A 89 KMDERAL 95 (114)
T ss_dssp EECSCCC
T ss_pred EEcccCC
Confidence 9886544
No 85
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=3.4e-14 Score=136.51 Aligned_cols=80 Identities=24% Similarity=0.269 Sum_probs=74.6
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceE-EEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeE
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSV-FALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLK 81 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V-~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~ 81 (1131)
..+|||||||+++|+++|+++|+.+ |.| .+|+|+.|+ ||++||||||+|++.++|++|+.. + +..++||.|+
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~---g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~--~~~~~gr~i~ 87 (114)
T 2cpy_A 15 KVCAHITNIPFSITKMDVLQFLEGI---PVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-H--RKKLNGREAF 87 (114)
T ss_dssp CCEEEEESCCTTSCHHHHHHHTTTS---CCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-C--SEEETTEEEE
T ss_pred ccEEEEeCcCCcCCHHHHHHHHHhC---CCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-C--CCccCCeEEE
Confidence 4689999999999999999999997 699 899999999 999999999999999999999987 4 8999999999
Q ss_pred eecCCCCC
Q 001183 82 ISETHSDI 89 (1131)
Q Consensus 82 V~~a~~~i 89 (1131)
|..|.+..
T Consensus 88 v~~a~~~~ 95 (114)
T 2cpy_A 88 VHVVTLED 95 (114)
T ss_dssp EEEECHHH
T ss_pred EEECCHHH
Confidence 99987655
No 86
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=7.2e-14 Score=134.02 Aligned_cols=77 Identities=21% Similarity=0.284 Sum_probs=70.8
Q ss_pred cEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEee
Q 001183 4 ATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKIS 83 (1131)
Q Consensus 4 ~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V~ 83 (1131)
.+|||+|||+++|++||++||+.+ .|.+|+|..|+. |++||||||+|+++++|++|+ .+ |+..++||.|.|.
T Consensus 17 ~~v~V~nLp~~~te~dl~~~F~~~----~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~--~~~~~~gr~i~V~ 88 (109)
T 2dnn_A 17 LYVSVHGMPFSAMENDVRDFFHGL----RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KR--NRMLMIQRYVEVS 88 (109)
T ss_dssp HEEEEECCCSSCCHHHHHHHTTTS----CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HT--TTEEETTEEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHhccC----CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hc--CCCeECCeEEEEE
Confidence 589999999999999999999998 589999999985 999999999999999999999 45 4899999999999
Q ss_pred cCCCC
Q 001183 84 ETHSD 88 (1131)
Q Consensus 84 ~a~~~ 88 (1131)
.|.+.
T Consensus 89 ~a~~~ 93 (109)
T 2dnn_A 89 PATER 93 (109)
T ss_dssp ECCHH
T ss_pred ECCcc
Confidence 88653
No 87
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.6e-13 Score=128.78 Aligned_cols=81 Identities=17% Similarity=0.261 Sum_probs=75.1
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||+|||+.+++++|+++|+++ |.|..|+|..++.||++||||||+|.+.++|++|+.. +..++|+.|+|
T Consensus 15 ~~~l~v~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~----~~~~~g~~l~v 87 (103)
T 2cqg_A 15 TSDLIVLGLPWKTTEQDLKEYFSTF---GEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ----RHMIDGRWCDC 87 (103)
T ss_dssp CCCEEEESCCSSCCHHHHHHHHGGG---SCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS----CEEETTEEEEE
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhc---CCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc----CCeeCCeEEEE
Confidence 4689999999999999999999998 7999999999999999999999999999999999983 57999999999
Q ss_pred ecCCCCCC
Q 001183 83 SETHSDIV 90 (1131)
Q Consensus 83 ~~a~~~i~ 90 (1131)
..|.+..-
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cqg_A 88 KLPNSKQS 95 (103)
T ss_dssp ECCCTTCC
T ss_pred EecCCCCc
Confidence 99987653
No 88
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=9.9e-14 Score=127.28 Aligned_cols=78 Identities=17% Similarity=0.239 Sum_probs=72.9
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
..+|||+|||+.+|+++|+++|+.+ .|.+|+|..+ .+|++||||||+|++.++|++|+. + |+..++||.|+|
T Consensus 10 ~~~l~v~nLp~~~t~~~l~~~F~~~----~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~--~g~~~~gr~i~v 81 (91)
T 2dgw_A 10 CHTVKLRGAPFNVTEKNVMEFLAPL----KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-C--NREYMGGRYIEV 81 (91)
T ss_dssp CCEEEEECCCSSCCHHHHHHHHTTS----CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-S--CSEEETTEEEEE
T ss_pred ccEEEEECCCCCCCHHHHHHHHhhC----CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-h--CCceeCCcEEEE
Confidence 4689999999999999999999998 5889999999 799999999999999999999999 8 589999999999
Q ss_pred ecCCCC
Q 001183 83 SETHSD 88 (1131)
Q Consensus 83 ~~a~~~ 88 (1131)
..|.+.
T Consensus 82 ~~a~~~ 87 (91)
T 2dgw_A 82 FREKSG 87 (91)
T ss_dssp EEESSC
T ss_pred EECCcC
Confidence 998764
No 89
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=8.5e-14 Score=133.08 Aligned_cols=82 Identities=15% Similarity=0.155 Sum_probs=75.6
Q ss_pred ccEEEEeCCCCcCCHHHHH---HHHhhccCCceEEEEEEeecCCCC---CccceEEEEeCChHHHHHHHHhhcCCCceec
Q 001183 3 LATVWVSNIPQTAIAKDLL---LFLESKLGKNSVFALEIITDRSNW---KSRGIGRVQFTSLDFKSKAQNLSLNDKLVFN 76 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~---~~fe~~~G~G~V~~~~i~~dr~tg---~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~ 76 (1131)
..+|||||||+.+++++|+ ++|+++ |.|..|+|..++.++ ++||||||+|+++++|++|++.+ ||..++
T Consensus 15 ~~~l~V~nLp~~~~~~~l~~~~~~F~~~---G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~l--ng~~~~ 89 (111)
T 2cpi_A 15 KNLVFVVGLSQRLADPEVLKRPEYFGKF---GKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCV--NNVVVD 89 (111)
T ss_dssp SSCEEEEEECTTTCCHHHHHSTTTTTTT---SCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHH--TTEEET
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhhcc---CCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHh--CCCEEC
Confidence 5689999999999999999 999998 799999999998765 55699999999999999999999 489999
Q ss_pred CceeEeecCCCCC
Q 001183 77 SQNLKISETHSDI 89 (1131)
Q Consensus 77 gr~L~V~~a~~~i 89 (1131)
||.|+|+.|.+..
T Consensus 90 gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 90 GRTLKASLGTTKY 102 (111)
T ss_dssp TEEEEEESCCCCS
T ss_pred CEEEEEEeccccc
Confidence 9999999998865
No 90
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.46 E-value=7.9e-14 Score=134.23 Aligned_cols=77 Identities=14% Similarity=0.192 Sum_probs=69.8
Q ss_pred cEEEEeCCCCcCCHHHHHHHHhhccCCc-eEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 4 ATVWVSNIPQTAIAKDLLLFLESKLGKN-SVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 4 ~ti~Vgnl~~~~t~~~L~~~fe~~~G~G-~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.+|||||||+++++++|+++|+++ | .|..++|.. +++||||||+|++.++|++|++.+ ||..++||.|+|
T Consensus 29 ~~l~VgnLp~~~te~dL~~~F~~~---G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~l--ng~~l~Gr~i~V 99 (111)
T 2jvr_A 29 YRITMKNLPEGCSWQDLKDLAREN---SLETTFSSVNT----RDFDGTGALEFPSEEILVEALERL--NNIEFRGSVITV 99 (111)
T ss_dssp EEEEEECSSCCCCHHHHHHHHHHH---TCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHT--TTEEETTEEEEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHh---CCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHc--CCCEECCeEEEE
Confidence 589999999999999999999998 8 899999864 358999999999999999999999 599999999999
Q ss_pred ecCCCCC
Q 001183 83 SETHSDI 89 (1131)
Q Consensus 83 ~~a~~~i 89 (1131)
..+..++
T Consensus 100 ~~a~~~p 106 (111)
T 2jvr_A 100 ERDDNPP 106 (111)
T ss_dssp EESCC--
T ss_pred EECCCCC
Confidence 9997654
No 91
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.46 E-value=4.2e-14 Score=140.91 Aligned_cols=78 Identities=18% Similarity=0.194 Sum_probs=72.6
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCce---EEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCce
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNS---VFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQN 79 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~---V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~ 79 (1131)
..+|||||||+++|++||++||+++ |. |.+|+|+.|+. |+|||||||+|++.++|++|+. + |+..++||+
T Consensus 44 ~~~lfVgnLp~~~te~dL~~~F~~~---G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~--~g~~l~gr~ 116 (136)
T 2hgl_A 44 GFVVKLRGLPWSCSVEDVQNFLSDC---TIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-K--DRESMGHRY 116 (136)
T ss_dssp TCEEEEESCCTTCCHHHHHHHTTTC---CCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-T--TEEESSSSE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHh---CCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-c--CCCEECCEE
Confidence 3689999999999999999999997 68 89999999997 9999999999999999999999 7 489999999
Q ss_pred eEeecCCC
Q 001183 80 LKISETHS 87 (1131)
Q Consensus 80 L~V~~a~~ 87 (1131)
|+|..|.+
T Consensus 117 i~V~~a~~ 124 (136)
T 2hgl_A 117 IEVFKSHR 124 (136)
T ss_dssp EEEEECCH
T ss_pred EEEEECCh
Confidence 99998854
No 92
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.46 E-value=1.9e-13 Score=129.21 Aligned_cols=77 Identities=12% Similarity=0.166 Sum_probs=69.6
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
+++|||+|||+.+|++||+++|+++ |+|.+|+++. +||||||+|++.++|++|++.++...+.++||+|+|
T Consensus 21 s~~l~V~NLp~~~te~~L~~lF~~f---G~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 21 SPVVHIRGLIDGVVEADLVEALQEF---GPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHGGG---SCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHhcc---CCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 5799999999999999999999998 7999999983 689999999999999999999974456799999999
Q ss_pred ecCCCC
Q 001183 83 SETHSD 88 (1131)
Q Consensus 83 ~~a~~~ 88 (1131)
+-|...
T Consensus 92 ~~S~~k 97 (100)
T 3r27_A 92 NYSTSQ 97 (100)
T ss_dssp EECSCS
T ss_pred Eecccc
Confidence 988764
No 93
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.1e-13 Score=130.84 Aligned_cols=80 Identities=6% Similarity=0.070 Sum_probs=72.8
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
+++|||||||+.+|+++|+++|++| |.|..|+|..+ ||||||+|++.++|+.|++.++.++..++||.|+|
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~~f---G~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 15 SRVLHIRKLPGEVTETEVIALGLPF---GKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp CSEEEEESCCTTCCHHHHHHTTTTT---SCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 5789999999999999999999998 79999998854 89999999999999999998865688999999999
Q ss_pred ecCCCCCCC
Q 001183 83 SETHSDIVP 91 (1131)
Q Consensus 83 ~~a~~~i~~ 91 (1131)
+.|....+.
T Consensus 86 ~~a~~~~~~ 94 (101)
T 2cq1_A 86 QYSNHKELK 94 (101)
T ss_dssp EECSCSSCC
T ss_pred EEcCcccCc
Confidence 999887653
No 94
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=3e-13 Score=126.94 Aligned_cols=81 Identities=21% Similarity=0.316 Sum_probs=75.2
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||+|||+.+|+++|+++|+.+ |.|.+|+|..++. .+||||||+|.+.++|++|+..+ ++..++|+.|+|
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~f~~~---G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v 87 (103)
T 2cq3_A 15 PKRLHVSNIPFRFRDPDLRQMFGQF---GKILDVEIIFNER--GSKGFGFVTFENSADADRAREKL--HGTVVEGRKIEV 87 (103)
T ss_dssp CCEEEEESCCTTCCHHHHHHHGGGT---SCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHH--TTCEETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHh--CCCEECCEEEEE
Confidence 4789999999999999999999998 7999999999873 49999999999999999999999 489999999999
Q ss_pred ecCCCCCC
Q 001183 83 SETHSDIV 90 (1131)
Q Consensus 83 ~~a~~~i~ 90 (1131)
..|.+...
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cq3_A 88 NNATARVM 95 (103)
T ss_dssp EECCSSCC
T ss_pred EEcccCCC
Confidence 99988765
No 95
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.45 E-value=7.3e-14 Score=138.60 Aligned_cols=83 Identities=19% Similarity=0.181 Sum_probs=77.9
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||||||+.+|+++|+++|+.+ |.|..|+|..++.||++||||||+|++.++|++|+..++ |..++|+.|+|
T Consensus 47 ~~~l~V~nLp~~~te~~L~~~F~~~---G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~--g~~i~g~~l~V 121 (135)
T 2lea_A 47 MTSLKVDNLTYRTSPDTLRRVFEKY---GRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMD--GAVLDGRELRV 121 (135)
T ss_dssp CCCEEEECCCSSCHHHHHHHHHGGG---SCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTT--TCCSSSSCCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcC--CCEECCEEEEE
Confidence 3589999999999999999999997 799999999999999999999999999999999999994 89999999999
Q ss_pred ecCCCCCC
Q 001183 83 SETHSDIV 90 (1131)
Q Consensus 83 ~~a~~~i~ 90 (1131)
..|.+..-
T Consensus 122 ~~a~~~~~ 129 (135)
T 2lea_A 122 QMARYGRP 129 (135)
T ss_dssp EECCCCCC
T ss_pred EECCCCCC
Confidence 99987654
No 96
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.45 E-value=5.5e-14 Score=136.14 Aligned_cols=80 Identities=19% Similarity=0.189 Sum_probs=73.4
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCce---EEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCce
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNS---VFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQN 79 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~---V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~ 79 (1131)
..+|||||||+++|++||++||+.+ |. |.+|+|+.++. |++||||||+|++.++|++|+. + ++..++||.
T Consensus 17 ~~~l~V~nLp~~~te~~l~~~F~~~---G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~--~g~~~~gr~ 89 (118)
T 2db1_A 17 GYVVKLRGLPWSCSIEDVQNFLSDC---TIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-K--DRESMGHRY 89 (118)
T ss_dssp CCEEEEESCCTTCCHHHHHHHTTTS---CBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-G--TTEEETTEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHc---CCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-c--CCCeECCeE
Confidence 4689999999999999999999997 57 89999999996 9999999999999999999999 6 489999999
Q ss_pred eEeecCCCCC
Q 001183 80 LKISETHSDI 89 (1131)
Q Consensus 80 L~V~~a~~~i 89 (1131)
|+|..|..+-
T Consensus 90 i~V~~a~~~~ 99 (118)
T 2db1_A 90 IEVFKSHRTE 99 (118)
T ss_dssp EEEEEECHHH
T ss_pred EEEEECCHHH
Confidence 9999886543
No 97
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.45 E-value=9.9e-14 Score=149.73 Aligned_cols=81 Identities=19% Similarity=0.257 Sum_probs=76.4
Q ss_pred cEEEEeCCCCcCCHHHHHHHHhhccCCc--eEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeE
Q 001183 4 ATVWVSNIPQTAIAKDLLLFLESKLGKN--SVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLK 81 (1131)
Q Consensus 4 ~ti~Vgnl~~~~t~~~L~~~fe~~~G~G--~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~ 81 (1131)
++|||||||+.+|+++|+++|+.+ | .|.+|+|+.|+.||++||||||+|++.++|++||..+ |+..++||.|+
T Consensus 69 ~~lfVgnL~~~~te~~L~~~F~~~---G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~l--ng~~~~Gr~l~ 143 (229)
T 3q2s_C 69 IALYIGNLTWWTTDEDLTEAVHSL---GVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLL--PKRELHGQNPV 143 (229)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHTT---TCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTS--TTSCBTTBCCE
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHH---CCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHc--CCCeECCEEeE
Confidence 579999999999999999999998 8 9999999999999999999999999999999999999 48999999999
Q ss_pred eecCCCCC
Q 001183 82 ISETHSDI 89 (1131)
Q Consensus 82 V~~a~~~i 89 (1131)
|..|...-
T Consensus 144 V~~a~~~~ 151 (229)
T 3q2s_C 144 VTPVNKQF 151 (229)
T ss_dssp EEECCHHH
T ss_pred EEECCCCc
Confidence 99887543
No 98
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.1e-13 Score=134.97 Aligned_cols=80 Identities=9% Similarity=0.107 Sum_probs=72.7
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
+++|||||||+++|++||+++|++| |.|.+|+|+.+ ||||||+|++.++|++|++.++.++..++||+|+|
T Consensus 31 s~~LfVgNLp~~vte~dL~~lF~~f---G~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 31 SRVIHIRKLPIDVTEGEVISLGLPF---GKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHTTT---SCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 5789999999999999999999998 79999999964 79999999999999999998864467899999999
Q ss_pred ecCCCCCCC
Q 001183 83 SETHSDIVP 91 (1131)
Q Consensus 83 ~~a~~~i~~ 91 (1131)
+.|....+.
T Consensus 102 ~~a~~k~~~ 110 (119)
T 2ad9_A 102 QFSNHKELK 110 (119)
T ss_dssp EECSSSSCC
T ss_pred EEccCCCCC
Confidence 999887663
No 99
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.1e-13 Score=132.02 Aligned_cols=80 Identities=21% Similarity=0.308 Sum_probs=74.2
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||||||+.+|+++|+++|+.+ |.|.+|+|..++ +++||||||+|.+.++|++|++.+ +|..++|+.|+|
T Consensus 29 ~~~l~V~nLp~~~te~~l~~~F~~~---G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~V 101 (109)
T 2err_A 29 PKRLHVSNIPFRFRDPDLRQMFGQF---GKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKL--HGTVVEGRKIEV 101 (109)
T ss_dssp CCEEEEESCCTTCCHHHHHHHGGGT---CCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHH--TTCEETTEECEE
T ss_pred CCEEEEECCCCcCCHHHHHHHHHhc---CCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHc--CCCEECCEEEEE
Confidence 4689999999999999999999998 799999999987 569999999999999999999999 489999999999
Q ss_pred ecCCCCC
Q 001183 83 SETHSDI 89 (1131)
Q Consensus 83 ~~a~~~i 89 (1131)
..|.+..
T Consensus 102 ~~a~~~~ 108 (109)
T 2err_A 102 NNATARV 108 (109)
T ss_dssp EECCCSC
T ss_pred EECCCCc
Confidence 9998754
No 100
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.45 E-value=2.3e-13 Score=137.44 Aligned_cols=82 Identities=10% Similarity=0.086 Sum_probs=77.6
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||+|||+.+|+++|+++|+++ |.|.+|+|..++.|+++||||||+|++.++|++|+..+ |+..++|+.|+|
T Consensus 39 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~V 113 (156)
T 1h2v_Z 39 SCTLYVGNLSFYTTEEQIYELFSKS---GDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYI--NGTRLDDRIIRT 113 (156)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGG---SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHT--TTSEETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHh--CCCEECCeEEEE
Confidence 4689999999999999999999998 79999999999999999999999999999999999999 489999999999
Q ss_pred ecCCCCC
Q 001183 83 SETHSDI 89 (1131)
Q Consensus 83 ~~a~~~i 89 (1131)
..|.+..
T Consensus 114 ~~a~~~~ 120 (156)
T 1h2v_Z 114 DWDAGFK 120 (156)
T ss_dssp EEESCCC
T ss_pred EECCCCC
Confidence 9998754
No 101
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.45 E-value=3.7e-14 Score=134.74 Aligned_cols=79 Identities=15% Similarity=0.259 Sum_probs=72.7
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCce---EEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCce
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNS---VFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQN 79 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~---V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~ 79 (1131)
..+|||||||+++|++||++||+.+ |. |.+|+|..|+. |++||||||+|++.++|++|+. + ++..++||.
T Consensus 11 ~~~l~V~nLp~~~te~~l~~~F~~~---g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~--~~~~~~gr~ 83 (107)
T 2lmi_A 11 VFLIRAQGLPWSCTMEDVLNFFSDC---RIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-K--HRMYMGQRY 83 (107)
T ss_dssp CCEEEEECCCSSCCSHHHHHHTTTS---CBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-T--TTCCSSSSC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhc---CCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-h--CcceeCCeE
Confidence 4689999999999999999999996 46 99999999997 9999999999999999999999 6 489999999
Q ss_pred eEeecCCCC
Q 001183 80 LKISETHSD 88 (1131)
Q Consensus 80 L~V~~a~~~ 88 (1131)
|+|..|.+.
T Consensus 84 i~V~~a~~~ 92 (107)
T 2lmi_A 84 VEVYEINNE 92 (107)
T ss_dssp CCCEECCHH
T ss_pred EEEEECCHH
Confidence 999988753
No 102
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=2.1e-13 Score=129.65 Aligned_cols=82 Identities=16% Similarity=0.236 Sum_probs=73.5
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
+++|||||||+.+++++|+++|++| |.|.+|+|+. +||||||+|++.++|++|++.++.++..++|+.|+|
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~~f---G~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 15 SPVVHVRGLCESVVEADLVEALEKF---GTICYVMMMP------FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CSEEEEESCCSSCCHHHHHHHHTTT---SCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC---CCEEEEEEEC------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 5799999999999999999999998 7999999875 379999999999999999998864567899999999
Q ss_pred ecCCCCCCCCC
Q 001183 83 SETHSDIVPRP 93 (1131)
Q Consensus 83 ~~a~~~i~~~~ 93 (1131)
..|....+.||
T Consensus 86 ~~a~~~~~~~~ 96 (104)
T 1wex_A 86 NYSTSKRITRP 96 (104)
T ss_dssp EECSSSSCCCS
T ss_pred EEccCccccCC
Confidence 99998776554
No 103
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.44 E-value=3.7e-14 Score=132.70 Aligned_cols=79 Identities=15% Similarity=0.156 Sum_probs=73.4
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
..+|||||||+++|+++|+++|+++ |.|.. .++.++.+|++||||||+|++.++|++|++ ++ +..++|+.|+|
T Consensus 17 ~~~l~V~nLp~~~t~~~l~~~F~~~---G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~--g~~~~g~~l~V 89 (101)
T 1fj7_A 17 PFNLFIGNLNPNKSVAELKVAISEL---FAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LT--GLKVFGNEIKL 89 (101)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHH---HHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GG--GCCBTTBCCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHh---CCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cC--CcEECCcEEEE
Confidence 4689999999999999999999998 78988 888898999999999999999999999998 84 89999999999
Q ss_pred ecCCCC
Q 001183 83 SETHSD 88 (1131)
Q Consensus 83 ~~a~~~ 88 (1131)
..|.+.
T Consensus 90 ~~a~~~ 95 (101)
T 1fj7_A 90 EKPKGR 95 (101)
T ss_dssp ECCSCC
T ss_pred EEcCCC
Confidence 998764
No 104
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=5.4e-13 Score=126.59 Aligned_cols=80 Identities=13% Similarity=0.099 Sum_probs=73.1
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||+|||+.+|+++|+++|+++ |.|..|+|..+ +++||||||+|++.++|++|++.++ +..++|+.|+|
T Consensus 22 ~~~l~V~nLp~~~t~~~l~~~F~~~---G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~--g~~~~g~~l~V 93 (109)
T 1x4a_A 22 DCRIYVGNLPPDIRTKDIEDVFYKY---GAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRD--GYDYDGYRLRV 93 (109)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGG---SCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHT--TCEETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcC--CCEECCeEEEE
Confidence 4689999999999999999999998 79999999654 5699999999999999999999994 89999999999
Q ss_pred ecCCCCCC
Q 001183 83 SETHSDIV 90 (1131)
Q Consensus 83 ~~a~~~i~ 90 (1131)
..|.+..-
T Consensus 94 ~~a~~~~~ 101 (109)
T 1x4a_A 94 EFPRSGRG 101 (109)
T ss_dssp ECCCCCCC
T ss_pred EEcccCCC
Confidence 99988654
No 105
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=1.2e-13 Score=130.93 Aligned_cols=78 Identities=8% Similarity=0.081 Sum_probs=70.5
Q ss_pred ccEEEEeCCCC-cCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeE
Q 001183 3 LATVWVSNIPQ-TAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLK 81 (1131)
Q Consensus 3 ~~ti~Vgnl~~-~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~ 81 (1131)
+++|||||||+ .+|++||+++|++| |+|.+|+|+.+ ||||||+|++.++|+.|++.++.++..++||.|+
T Consensus 15 ~~~l~V~nLp~~~~te~dL~~lF~~f---G~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 15 RRVVHIMDFQRGKNLRYQLLQLVEPF---GVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCEEEEESCCCSSSHHHHHHTTTGGG---SCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCEEEEeCCCCCcCCHHHHHHHHHhc---CCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 57899999999 99999999999998 79999999854 5899999999999999999986446789999999
Q ss_pred eecCCCCC
Q 001183 82 ISETHSDI 89 (1131)
Q Consensus 82 V~~a~~~i 89 (1131)
|+.|....
T Consensus 86 V~~a~~~~ 93 (102)
T 1x4d_A 86 VHLSQKYK 93 (102)
T ss_dssp EEEECCCT
T ss_pred EEECCCCC
Confidence 99998643
No 106
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.43 E-value=2.8e-13 Score=138.45 Aligned_cols=83 Identities=12% Similarity=0.081 Sum_probs=77.6
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||||||+.+|+++|+++|+++ |.|..|+|..++.||++||||||+|.+.++|++|+..+ ||..++|+.|+|
T Consensus 72 ~~~l~V~nLp~~~t~~~L~~~F~~~---G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~V 146 (165)
T 1rk8_A 72 GWILFVTSIHEEAQEDEIQEKFCDY---GEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEAL--NGAEIMGQTIQV 146 (165)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGG---SCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHhhcC---CCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHh--CCCEECCEEEEE
Confidence 3579999999999999999999998 79999999999999999999999999999999999999 489999999999
Q ss_pred ecCCCCCC
Q 001183 83 SETHSDIV 90 (1131)
Q Consensus 83 ~~a~~~i~ 90 (1131)
..|....-
T Consensus 147 ~~a~~~~~ 154 (165)
T 1rk8_A 147 DWCFVKGP 154 (165)
T ss_dssp EESEECC-
T ss_pred EEecCCCC
Confidence 99987664
No 107
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.42 E-value=1.5e-13 Score=128.81 Aligned_cols=79 Identities=27% Similarity=0.309 Sum_probs=73.1
Q ss_pred cccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeE
Q 001183 2 VLATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLK 81 (1131)
Q Consensus 2 m~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~ 81 (1131)
+.++|||||||+++++++|+++|+++ |.|.+|+|..++ +|++||||||+|++.++|++|+. ++..++|+.|.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~----~~~~~~g~~l~ 79 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARY---GSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE----SQINFHGKKLK 79 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGG---SCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT----CCCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhC---CCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh----CCCeECCEEEE
Confidence 35789999999999999999999998 799999999999 99999999999999999999998 38999999999
Q ss_pred eecCCCC
Q 001183 82 ISETHSD 88 (1131)
Q Consensus 82 V~~a~~~ 88 (1131)
|..+...
T Consensus 80 v~~a~~~ 86 (102)
T 2xs2_A 80 LGPAIRK 86 (102)
T ss_dssp EEEEEEC
T ss_pred EEECCcC
Confidence 9887643
No 108
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=3.6e-13 Score=125.89 Aligned_cols=80 Identities=20% Similarity=0.245 Sum_probs=72.5
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||+|||+.+|+++|+++|+++ |.| ++..+ .+|++||||||+|.+.++|++|+..++ +..++|+.|+|
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~---g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~--g~~~~g~~l~v 85 (101)
T 2fc9_A 15 SKTLVLSNLSYSATEETLQEVFEKA---TFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCN--KREIEGRAIRL 85 (101)
T ss_dssp CSEEEEESCCTTCCHHHHHHHCSSC---SEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTS--SEEETTEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC---CEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhC--CCEeCCeEEEE
Confidence 5789999999999999999999997 677 67777 689999999999999999999999994 89999999999
Q ss_pred ecCCCCCCC
Q 001183 83 SETHSDIVP 91 (1131)
Q Consensus 83 ~~a~~~i~~ 91 (1131)
..|.+..-+
T Consensus 86 ~~a~~~~~~ 94 (101)
T 2fc9_A 86 ELQGPRGSP 94 (101)
T ss_dssp EECSSCCCC
T ss_pred EEcCCCCCC
Confidence 999887543
No 109
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=5.6e-14 Score=136.87 Aligned_cols=79 Identities=19% Similarity=0.164 Sum_probs=73.6
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
..+|||||||+.+|+++|+++|+.+ |.|..+.++.++.||++||||||+|++.++|++|++ + |+..++||.|+|
T Consensus 25 ~~~l~V~nLp~~~te~~l~~~F~~~---G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~--~g~~~~gr~i~V 98 (124)
T 1wel_A 25 GFCVYLKGLPFEAENKHVIDFFKKL---DIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-R--HKQYMGNRFIQV 98 (124)
T ss_dssp CCEEEEECCCTTCCHHHHHHHSCSS---CBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-S--CSBCSTTSCBEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhc---CCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-h--CCCeECCcEEEE
Confidence 3689999999999999999999997 799998888888899999999999999999999999 7 589999999999
Q ss_pred ecCCC
Q 001183 83 SETHS 87 (1131)
Q Consensus 83 ~~a~~ 87 (1131)
..|.+
T Consensus 99 ~~a~~ 103 (124)
T 1wel_A 99 HPITK 103 (124)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 98865
No 110
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.42 E-value=1.4e-13 Score=135.38 Aligned_cols=78 Identities=18% Similarity=0.212 Sum_probs=70.0
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEE-EEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeE
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVF-ALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLK 81 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~-~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~ 81 (1131)
..+|||||||+++|++||++||+++ | .|. +|+|..|+. |++||||||+|+++++|++|+... +..++||+|+
T Consensus 42 ~~~lfVgnLp~~~te~dL~~~F~~~-~--i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~---~~~l~gR~I~ 114 (126)
T 2hgm_A 42 DGFVRLRGLPFGCTKEEIVQFFSGL-E--IVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKH---KERIGHRYIE 114 (126)
T ss_dssp CCEEEEECCCTTCCHHHHHHHTTTS-C--EEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTT---TCCBTTBCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcC-C--ceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHC---CCEECCEEEE
Confidence 3689999999999999999999998 3 443 999999997 999999999999999999999863 5899999999
Q ss_pred eecCCC
Q 001183 82 ISETHS 87 (1131)
Q Consensus 82 V~~a~~ 87 (1131)
|..+.+
T Consensus 115 V~~a~~ 120 (126)
T 2hgm_A 115 VFKSSQ 120 (126)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 998754
No 111
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=1e-13 Score=135.81 Aligned_cols=80 Identities=15% Similarity=0.224 Sum_probs=71.2
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCC--ceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCcee
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGK--NSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNL 80 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~--G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L 80 (1131)
..+|||+|||+++|++||++||+++ |+ |.|.+|+|+.|+ ||++||||||+|+++++|++|+.. ++..++||+|
T Consensus 23 ~~~v~V~nLp~~~te~dl~~~F~~~-g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~---~~~~l~gR~i 97 (123)
T 2dha_A 23 QVIVRMRGLPFTATAEEVVAFFGQH-CPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK---HKDLLGKRYI 97 (123)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTT-SCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT---TTEESSSCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhh-CCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh---CCCeeCCeEE
Confidence 3689999999999999999999996 42 345799999995 999999999999999999999986 3799999999
Q ss_pred EeecCCC
Q 001183 81 KISETHS 87 (1131)
Q Consensus 81 ~V~~a~~ 87 (1131)
.|..|.+
T Consensus 98 ~V~~a~~ 104 (123)
T 2dha_A 98 ELFRSTA 104 (123)
T ss_dssp CCEEECH
T ss_pred EEEECCH
Confidence 9988754
No 112
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.41 E-value=1.1e-13 Score=133.39 Aligned_cols=78 Identities=12% Similarity=0.170 Sum_probs=70.7
Q ss_pred ccEEEEeCCCCc-CCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeE
Q 001183 3 LATVWVSNIPQT-AIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLK 81 (1131)
Q Consensus 3 ~~ti~Vgnl~~~-~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~ 81 (1131)
+++|||||||++ +|++||+++|++| |.|.+|+|. ++||||||+|++.++|+.|++.++.++..++||.|+
T Consensus 25 ~~~l~V~NLp~~~~te~~L~~lF~~f---G~V~~v~i~------~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 25 GRVIHLSNLPHSGYSDSAVLKLAEPY---GKIKNYILM------RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp CCEEEEESCCCSSCCSHHHHTTTTTT---SCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCEEEEeCCCCccCCHHHHHHHHHhc---CCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 578999999998 9999999999998 799999996 468999999999999999999886557889999999
Q ss_pred eecCCCCC
Q 001183 82 ISETHSDI 89 (1131)
Q Consensus 82 V~~a~~~i 89 (1131)
|+.|...-
T Consensus 96 V~~a~~~~ 103 (112)
T 1x4f_A 96 VDLSEKYK 103 (112)
T ss_dssp EEEECSCS
T ss_pred EEECcccc
Confidence 99987643
No 113
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.41 E-value=4.8e-13 Score=141.81 Aligned_cols=82 Identities=15% Similarity=0.210 Sum_probs=77.2
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.+||||||||+++|+++|+++|+++ |+|.+|+|+.|+.||++||||||+|.+.++|++|+..+ ++..+.|+.|+|
T Consensus 15 ~~tlfVgnLp~~~te~~L~~~F~~~---G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~--~~~~~~g~~i~~ 89 (213)
T 4f02_A 15 MASLYVGDLHPDVTEAMLYEKFSPA---GPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM--NFDVIKGKPVRI 89 (213)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGG---SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhh---CCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHh--hhhhcCCccccc
Confidence 4689999999999999999999997 79999999999999999999999999999999999999 489999999999
Q ss_pred ecCCCCC
Q 001183 83 SETHSDI 89 (1131)
Q Consensus 83 ~~a~~~i 89 (1131)
..+....
T Consensus 90 ~~~~~~~ 96 (213)
T 4f02_A 90 MWSQRDP 96 (213)
T ss_dssp EECCCCT
T ss_pred ccccccc
Confidence 9887654
No 114
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=4.4e-13 Score=128.12 Aligned_cols=79 Identities=18% Similarity=0.201 Sum_probs=71.6
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCcee-------
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVF------- 75 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~------- 75 (1131)
.++|||+|||+.+|+++|+++|+.+ |.|..|+|..++ +|++||||||+|.+.++|++|++.++ |..+
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~--g~~~~~~~~~~ 98 (114)
T 1x5o_A 25 PTNLYISNLPLSMDEQELENMLKPF---GQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFN--GKFIKTPPGVS 98 (114)
T ss_dssp TTEEEEESCCTTCCHHHHHHTTTTT---SCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHB--TCCCCCCTTSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhC--CCEEcCCcccc
Confidence 3689999999999999999999997 799999999999 99999999999999999999999995 7888
Q ss_pred -cCceeEeecCCC
Q 001183 76 -NSQNLKISETHS 87 (1131)
Q Consensus 76 -~gr~L~V~~a~~ 87 (1131)
.|++|+|.-|.+
T Consensus 99 ~~~~~l~v~~a~p 111 (114)
T 1x5o_A 99 APTEPLLCKFSGP 111 (114)
T ss_dssp CCSSCBEEEECCC
T ss_pred CCCCceeEEccCC
Confidence 567777776653
No 115
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.40 E-value=6.1e-13 Score=131.00 Aligned_cols=79 Identities=13% Similarity=0.138 Sum_probs=71.2
Q ss_pred ccEEEEeCCCCcCCHHHHH----HHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCc
Q 001183 3 LATVWVSNIPQTAIAKDLL----LFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQ 78 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~----~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr 78 (1131)
.++|||||||+.+++++|+ ++|+++ |.|.+|.+. .||++||||||+|++.++|..|+..+ ||..+.|+
T Consensus 29 ~~~LfV~nL~~~~~e~~L~~~L~~~F~~~---G~I~~v~i~---~~~~~rG~aFV~F~~~~~A~~Ai~~l--ng~~l~gr 100 (127)
T 2a3j_A 29 SQVVLITNINPEVPKEKLQALLYALASSQ---GDILDIVVD---LSDDNSGKAYIVFATQESAQAFVEAF--QGYPFQGN 100 (127)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHHHH---SCEEEEEEC---CCCSSCCCEEEEESSHHHHHHHHHHS--TTCCCTTS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhccC---CCeEEEEec---cCCCcCCEEEEEECCHHHHHHHHHHH--CCCEeCCC
Confidence 4689999999999999977 699998 799988774 37899999999999999999999999 48999999
Q ss_pred eeEeecCCCCC
Q 001183 79 NLKISETHSDI 89 (1131)
Q Consensus 79 ~L~V~~a~~~i 89 (1131)
.|+|+-|....
T Consensus 101 ~l~V~~a~~~~ 111 (127)
T 2a3j_A 101 PLVITFSETPQ 111 (127)
T ss_dssp CCEEEECCCCC
T ss_pred EEEEEEccCcc
Confidence 99999998755
No 116
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=5.4e-13 Score=124.82 Aligned_cols=80 Identities=18% Similarity=0.206 Sum_probs=73.3
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||+|||+.+|+++|+++|+.+ + .++++.++.+|++||||||+|++.++|++|+..++ +..++|+.|+|
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~---~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~--g~~~~g~~l~V 86 (102)
T 2fc8_A 15 SKTLFVKGLSEDTTEETLKESFDGS---V---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAME--DGEIDGNKVTL 86 (102)
T ss_dssp CSSEEEECCCTTCCHHHHHHTSTTC---S---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHT--TCEETTEECEE
T ss_pred CCEEEEeCCCCccCHHHHHHHhcCC---e---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhC--CCeECCeEEEE
Confidence 4689999999999999999999976 2 68899999999999999999999999999999994 89999999999
Q ss_pred ecCCCCCC
Q 001183 83 SETHSDIV 90 (1131)
Q Consensus 83 ~~a~~~i~ 90 (1131)
..|.+..-
T Consensus 87 ~~a~~~~~ 94 (102)
T 2fc8_A 87 DWAKPKGE 94 (102)
T ss_dssp EECCCCCS
T ss_pred EEecCCCC
Confidence 99987653
No 117
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=1.6e-13 Score=131.12 Aligned_cols=83 Identities=13% Similarity=0.107 Sum_probs=72.5
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||||||+.+|+++|+++|+.+ |.|..+.+..+..+|++||||||+|.+.++|++|+..++ |..++|+.|+|
T Consensus 25 ~~~l~V~nLp~~~t~~~l~~~f~~~---G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~--g~~~~g~~l~v 99 (115)
T 2cpx_A 25 NKVLYLKNLSPRVTERDLVSLFARF---QEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVN--GYKLYGKILVI 99 (115)
T ss_dssp CSEEEEECCCTTCCHHHHHHHTHHH---HHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHST--TCBCSSCBCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHh---CCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhC--CCEeCCcEEEE
Confidence 4689999999999999999999998 798544444444489999999999999999999999994 89999999999
Q ss_pred ecCCCCCC
Q 001183 83 SETHSDIV 90 (1131)
Q Consensus 83 ~~a~~~i~ 90 (1131)
..|.+..-
T Consensus 100 ~~a~~~~~ 107 (115)
T 2cpx_A 100 EFGKNKKQ 107 (115)
T ss_dssp EECCCCSC
T ss_pred EEccCCCC
Confidence 99988664
No 118
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.39 E-value=3.2e-13 Score=125.08 Aligned_cols=79 Identities=15% Similarity=0.244 Sum_probs=72.8
Q ss_pred ccEEEEeCCCCcCCHHHHH----HHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCc
Q 001183 3 LATVWVSNIPQTAIAKDLL----LFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQ 78 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~----~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr 78 (1131)
+++|||||||+.+++++|+ ++|+++ |.|.+|+|.. +|++||||||+|.+.++|+.|+..++ |..++|+
T Consensus 8 ~~~l~V~nLp~~~~~~~l~~~l~~~f~~~---G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~--g~~~~g~ 79 (97)
T 1nu4_A 8 NHTIYINNLNEKIKKDELKKSLHAIFSRF---GQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQ--GFPFYDK 79 (97)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHGGG---SCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHT--TCEETTE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhC---CCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhC--CCEECCc
Confidence 5689999999999999999 999998 7999999873 78999999999999999999999994 8999999
Q ss_pred eeEeecCCCCC
Q 001183 79 NLKISETHSDI 89 (1131)
Q Consensus 79 ~L~V~~a~~~i 89 (1131)
.|+|..|.++.
T Consensus 80 ~l~v~~a~~~~ 90 (97)
T 1nu4_A 80 PMRIQYAKTDS 90 (97)
T ss_dssp ECEEEECSSCC
T ss_pred EEEEEEccCCC
Confidence 99999988754
No 119
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.39 E-value=9e-13 Score=138.26 Aligned_cols=86 Identities=14% Similarity=0.228 Sum_probs=80.3
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
..+|||+|||+++|+++|+++|+.+ |.|..|+|..++.+|++||||||+|.+.++|.+|+..++ |..++|+.|+|
T Consensus 125 ~~~l~v~nlp~~~t~~~l~~~f~~~---G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~--g~~~~g~~i~V 199 (216)
T 2qfj_A 125 FNRIYVASVHQDLSDDDIKSVFEAF---GKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMN--LFDLGGQYLRV 199 (216)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHTTS---SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT--TCBCSSSBCEE
T ss_pred CcEEEEeCCCCcCCHHHHHHHHhcc---CCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHcc--CCEeCCcEEEE
Confidence 3689999999999999999999998 799999999999999999999999999999999999994 89999999999
Q ss_pred ecCCCCCCCCC
Q 001183 83 SETHSDIVPRP 93 (1131)
Q Consensus 83 ~~a~~~i~~~~ 93 (1131)
+.|.+.+.|.+
T Consensus 200 ~~a~~~~~~~~ 210 (216)
T 2qfj_A 200 GKAVTPPMPLL 210 (216)
T ss_dssp EECSSCSSTTS
T ss_pred EEecCCCCCCC
Confidence 99999876443
No 120
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.38 E-value=1.1e-12 Score=131.34 Aligned_cols=82 Identities=18% Similarity=0.258 Sum_probs=76.9
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||||||+++|+++|+++|+.+ |.|.+++++.++.+|++||||||+|.++++|++|++.+ +|..++|+.|+|
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~---G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l--~~~~~~g~~l~v 76 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSI---GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL--NGLRLQTKTIKV 76 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTT---SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhc---CCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHc--CCCccCCceEEE
Confidence 3689999999999999999999997 79999999999999999999999999999999999999 489999999999
Q ss_pred ecCCCCC
Q 001183 83 SETHSDI 89 (1131)
Q Consensus 83 ~~a~~~i 89 (1131)
..+.+..
T Consensus 77 ~~~~~~~ 83 (167)
T 1fxl_A 77 SYARPSS 83 (167)
T ss_dssp EECCCCC
T ss_pred EecCCCc
Confidence 9887644
No 121
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.38 E-value=1.4e-13 Score=137.61 Aligned_cols=80 Identities=15% Similarity=0.174 Sum_probs=72.3
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
..+|||+|||+++|++||+++|+++ | |.+|+|+.|+. |++||||||+|+++++|++|+ .+ |+..++||+|+|
T Consensus 46 ~~~lfV~nLp~~~te~dL~~~F~~~---G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~--~g~~l~gR~i~V 117 (139)
T 2hgn_A 46 GHCVHMRGLPYKATENDIYNFFSPL---N-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SK--DRANMQHRYIEL 117 (139)
T ss_dssp CCCEECCSCCTTCCHHHHHHHHCSC---C-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TC--CSCSSSSCCCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---C-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hh--CCCEECCEEEEE
Confidence 4689999999999999999999997 6 55999999986 999999999999999999999 55 489999999999
Q ss_pred ecCCCCCC
Q 001183 83 SETHSDIV 90 (1131)
Q Consensus 83 ~~a~~~i~ 90 (1131)
..+.....
T Consensus 118 ~~a~~~~~ 125 (139)
T 2hgn_A 118 FLNSTTGA 125 (139)
T ss_dssp EECCCSCC
T ss_pred EECCCCCC
Confidence 98877553
No 122
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=6.2e-13 Score=123.65 Aligned_cols=77 Identities=21% Similarity=0.245 Sum_probs=69.8
Q ss_pred cccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeE
Q 001183 2 VLATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLK 81 (1131)
Q Consensus 2 m~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~ 81 (1131)
+.++|||||||+.+|+++|+++|+++ |.|. +++++ +++||||||+|.+.++|++|+..+ ||..++|+.|+
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~---G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~ 87 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALREL---GSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCL--QGLRLGTDTLR 87 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHT---TCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHH--TTCCSSSSCCE
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhc---CCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHh--CCCEECCcEEE
Confidence 36799999999999999999999998 6886 78876 469999999999999999999999 48999999999
Q ss_pred eecCCCC
Q 001183 82 ISETHSD 88 (1131)
Q Consensus 82 V~~a~~~ 88 (1131)
|..|.+.
T Consensus 88 V~~a~~~ 94 (97)
T 2e5j_A 88 VALARQQ 94 (97)
T ss_dssp EEECCCC
T ss_pred EEEcCCC
Confidence 9998763
No 123
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.38 E-value=7.7e-13 Score=123.66 Aligned_cols=74 Identities=15% Similarity=0.284 Sum_probs=69.2
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||||||+.+++++|+++|+++ |.|.++++. ++||||||+|.+.++|+.|+..++ |..++|+.|+|
T Consensus 27 ~~~l~V~nlp~~~~~~~l~~~f~~~---G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~--g~~~~g~~l~V 95 (101)
T 2la4_A 27 VTTAYIGNIPHFATEADLIPLFQNF---GFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALA--NFPFQGRNLRT 95 (101)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTT---SCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHT--TCEETTEECCC
T ss_pred CCEEEEcCCCcccCHHHHHHHHHhC---CCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhC--CCeECCeEEEE
Confidence 4689999999999999999999998 799999998 578999999999999999999994 89999999999
Q ss_pred ecCCC
Q 001183 83 SETHS 87 (1131)
Q Consensus 83 ~~a~~ 87 (1131)
+.|.+
T Consensus 96 ~~a~~ 100 (101)
T 2la4_A 96 GWGKE 100 (101)
T ss_dssp CBCCC
T ss_pred EeccC
Confidence 98875
No 124
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.08 E-value=4e-14 Score=136.07 Aligned_cols=82 Identities=16% Similarity=0.194 Sum_probs=76.9
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEE--------EEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCce
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFA--------LEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLV 74 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~--------~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~ 74 (1131)
.++|||||||+.+++++|+++|+++ |.|.. |+|..++.||++||||||+|.+.++|++|+..++ +..
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~--g~~ 81 (116)
T 2lcw_A 7 NNTIFVQGLGENVTIESVADYFKQI---GIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFD--GKE 81 (116)
Confidence 4689999999999999999999998 79999 9999999999999999999999999999999994 899
Q ss_pred ecCceeEeecCCCCC
Q 001183 75 FNSQNLKISETHSDI 89 (1131)
Q Consensus 75 ~~gr~L~V~~a~~~i 89 (1131)
++|+.|+|..|.+..
T Consensus 82 ~~g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 82 FSGNPIKVSFATRRA 96 (116)
Confidence 999999999988754
No 125
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.38 E-value=1.1e-12 Score=131.95 Aligned_cols=96 Identities=20% Similarity=0.195 Sum_probs=83.4
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
..+|||||||+++++++|+++|+++ |.|.+++++.++.+|++||||||+|.++++|++|++.+ +|..++|+.|+|
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l--~~~~~~g~~l~v 77 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAI---GPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVL--NGITVRNKRLKV 77 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTT---SCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHH--TTCEETTEECEE
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhc---CCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhc--CCCEeCCcEEEE
Confidence 4689999999999999999999997 79999999999999999999999999999999999998 489999999999
Q ss_pred ecCCCCCCCCCCCCcceecCeEEEEeeee
Q 001183 83 SETHSDIVPRPVKAQHRVEDGVLHVGVMC 111 (1131)
Q Consensus 83 ~~a~~~i~~~~~~~~~~~~~~~~~~g~~~ 111 (1131)
..+.+..-.. .+-+|.+|.+-
T Consensus 78 ~~~~~~~~~~--------~~~~l~v~nl~ 98 (168)
T 1b7f_A 78 SYARPGGESI--------KDTNLYVTNLP 98 (168)
T ss_dssp EECCCCSSTT--------TTCEEEEESCC
T ss_pred EecCCCcccC--------CCCCEEEeCCC
Confidence 9887654321 23456666543
No 126
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.37 E-value=7.8e-13 Score=123.64 Aligned_cols=77 Identities=14% Similarity=0.052 Sum_probs=71.9
Q ss_pred cEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEee
Q 001183 4 ATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKIS 83 (1131)
Q Consensus 4 ~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V~ 83 (1131)
++|||||||+.+|+++|+++|+++ |.|.+|+|..+ +||||||+|.+.++|++|++.++ +..++|+.|+|.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~--g~~~~g~~l~V~ 70 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYY---GPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLD--GKVICGSRVRVE 70 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHH---CCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHH--HSCSSSCCCEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHC--CCeECCcEEEEE
Confidence 489999999999999999999998 79999999987 89999999999999999999995 789999999999
Q ss_pred cCCCCCC
Q 001183 84 ETHSDIV 90 (1131)
Q Consensus 84 ~a~~~i~ 90 (1131)
.|.+..-
T Consensus 71 ~a~~~~~ 77 (101)
T 2hvz_A 71 LSTGMPR 77 (101)
T ss_dssp ESSSCCC
T ss_pred EccCCCC
Confidence 9988763
No 127
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=3.3e-13 Score=129.61 Aligned_cols=77 Identities=8% Similarity=0.078 Sum_probs=69.6
Q ss_pred cccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCC---CCccceEEEEeCChHHHHHHHHhhcCCCceecCc
Q 001183 2 VLATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSN---WKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQ 78 (1131)
Q Consensus 2 m~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~t---g~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr 78 (1131)
..++|||||||+.+|+++|+++|+++ |.|. +.++.++.| |++||||||+|+++++|++|++.++ .++|+
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~---G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~----~~~G~ 78 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRF---GPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL----EEDGK 78 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTT---CCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE----EETTE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhc---CCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh----hcCCc
Confidence 35789999999999999999999998 7999 999999888 8999999999999999999999983 48899
Q ss_pred eeEeecCC
Q 001183 79 NLKISETH 86 (1131)
Q Consensus 79 ~L~V~~a~ 86 (1131)
.|.+..++
T Consensus 79 ~~~~~~~~ 86 (114)
T 2dnl_A 79 LYLCVSSP 86 (114)
T ss_dssp EEEEECCS
T ss_pred EEEeccCC
Confidence 99988654
No 128
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=2.1e-12 Score=118.32 Aligned_cols=75 Identities=15% Similarity=0.295 Sum_probs=69.9
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||||||+++|+++|+++|+++ |.|.+|++. ||||||+|.+.++|++|++.++ +..++|+.|+|
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~--g~~~~g~~l~v 74 (90)
T 2dnq_A 8 MVKLFIGNLPREATEQEIRSLFEQY---GKVLECDII--------KNYGFVHIEDKTAAEDAIRNLH--HYKLHGVNINV 74 (90)
T ss_dssp CEEEEEESCCSSCCHHHHHHHHHTS---SCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHT--TCBCSSCBCEE
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhC---CCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhc--CCccCCcEEEE
Confidence 4689999999999999999999998 799999998 7999999999999999999994 89999999999
Q ss_pred ecCCCCCC
Q 001183 83 SETHSDIV 90 (1131)
Q Consensus 83 ~~a~~~i~ 90 (1131)
..+.+..-
T Consensus 75 ~~a~~~~~ 82 (90)
T 2dnq_A 75 EASKNKSK 82 (90)
T ss_dssp ECSSCCCC
T ss_pred EECCCCCC
Confidence 99988664
No 129
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.37 E-value=5.9e-13 Score=123.19 Aligned_cols=77 Identities=16% Similarity=0.133 Sum_probs=69.5
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||||||+.+|+++|+++|+++ |.|..+ +.+|++||||||+|.+.++|++|+..++ |..++|+.|+|
T Consensus 16 ~~~l~V~nL~~~~t~~~l~~~F~~~---g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~--g~~~~g~~l~v 85 (96)
T 1fjc_A 16 ARTLLAKNLSFNITEDELKEVFEDA---LEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQ--GAEIDGRSVSL 85 (96)
T ss_dssp GGEEEEESCCSSCCHHHHHHHHCSE---EEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTT--EEEETTEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC---CcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhC--CCEECCeEEEE
Confidence 4699999999999999999999997 677665 5589999999999999999999999994 89999999999
Q ss_pred ecCCCCC
Q 001183 83 SETHSDI 89 (1131)
Q Consensus 83 ~~a~~~i 89 (1131)
..|.+..
T Consensus 86 ~~a~~~~ 92 (96)
T 1fjc_A 86 YYTGEKG 92 (96)
T ss_dssp EECSSSC
T ss_pred EEcCCCC
Confidence 9987643
No 130
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=2.1e-12 Score=122.69 Aligned_cols=79 Identities=10% Similarity=0.106 Sum_probs=72.7
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||||||+.+++++|+++|+.+ |.|..|+|..+ ||||||+|.+.++|++|+..+ +|..++|+.|+|
T Consensus 25 ~~~l~V~nl~~~~t~~~l~~~F~~~---G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v 93 (109)
T 1x4g_A 25 NCTVYCGGIASGLTDQLMRQTFSPF---GQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSV--NGTTIEGHVVKC 93 (109)
T ss_dssp CCEEEEECCSSCCCHHHHHHHHHHH---SCEEEEEEETT------TTEEEEEESSHHHHHHHHHHH--TTCEETTEECEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHc--CCCEECCcEEEE
Confidence 4689999999999999999999998 79999999976 799999999999999999999 489999999999
Q ss_pred ecCCCCCCCC
Q 001183 83 SETHSDIVPR 92 (1131)
Q Consensus 83 ~~a~~~i~~~ 92 (1131)
..|.++.-++
T Consensus 94 ~~a~~~~~~~ 103 (109)
T 1x4g_A 94 YWGKESPDMT 103 (109)
T ss_dssp ECCCCCCSSC
T ss_pred EecCCCCCCC
Confidence 9999877543
No 131
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.36 E-value=2.5e-12 Score=122.09 Aligned_cols=76 Identities=21% Similarity=0.234 Sum_probs=70.9
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecC-----
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNS----- 77 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~g----- 77 (1131)
..+|||+|||+++|+++|+++|+++ |.|..|+|..+ |||||+|++.++|++|++.+ |+..++|
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l--~g~~~~g~~~~~ 82 (108)
T 1x4c_A 15 ENRVVVSGLPPSGSWQDLKDHMREA---GDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKL--DNTKFRSHEGET 82 (108)
T ss_dssp CCEEEEESCCSSCCHHHHHHHHGGG---SCEEEEEEETT-------TEEEEEESSHHHHHHHHHHS--SSEEEECTTSCE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCEeEEEEecC-------CEEEEEECCHHHHHHHHHHH--CcCCccCCcCcc
Confidence 4689999999999999999999997 79999999987 99999999999999999999 4899999
Q ss_pred ceeEeecCCCCCC
Q 001183 78 QNLKISETHSDIV 90 (1131)
Q Consensus 78 r~L~V~~a~~~i~ 90 (1131)
+.|+|..|.+..-
T Consensus 83 ~~i~V~~a~~~~~ 95 (108)
T 1x4c_A 83 AYIRVKVDGPRSP 95 (108)
T ss_dssp EEEEEEESSCCSC
T ss_pred eEEEEEeCCCCCC
Confidence 9999999988663
No 132
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.36 E-value=2.4e-12 Score=133.01 Aligned_cols=99 Identities=16% Similarity=0.224 Sum_probs=80.1
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||||||+.+|+++|+++|+.+ |.|..|+|+.++.||++||||||+|.+.++|++|++. ++..++|+.|+|
T Consensus 13 ~~~l~V~nLp~~~te~~l~~~F~~~---G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~---~~~~~~g~~l~v 86 (196)
T 1l3k_A 13 LRKLFIGGLSFETTDESLRSHFEQW---GTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA---RPHKVDGRVVEP 86 (196)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHGGG---SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT---CSCEETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC---CCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc---CCCEECCEEeee
Confidence 4699999999999999999999998 7999999999999999999999999999999999987 378999999999
Q ss_pred ecCCCCCCC-CCCCCcceecCeEEEEeee
Q 001183 83 SETHSDIVP-RPVKAQHRVEDGVLHVGVM 110 (1131)
Q Consensus 83 ~~a~~~i~~-~~~~~~~~~~~~~~~~g~~ 110 (1131)
..+....-+ ++. -....-+|.+|.+
T Consensus 87 ~~~~~~~~~~~~~---~~~~~~~l~V~nL 112 (196)
T 1l3k_A 87 KRAVSREDSQRPG---AHLTVKKIFVGGI 112 (196)
T ss_dssp EECCC--------------CCSEEEEECC
T ss_pred ecccCcccccccc---cCCCcceEEEeCC
Confidence 998765432 211 1223345666665
No 133
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.36 E-value=1.7e-12 Score=129.85 Aligned_cols=80 Identities=21% Similarity=0.188 Sum_probs=75.4
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
..+|+|+|||+.+|+++|+++|+.+ |.|.++++..++.+|.+||||||+|.+.++|.+|+..+ ||..++|+.|+|
T Consensus 87 ~~~l~v~nl~~~~t~~~l~~~f~~~---G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~i~v 161 (166)
T 3md3_A 87 TFNLFVGDLNVNVDDETLRNAFKDF---PSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSM--QGQDLNGRPLRI 161 (166)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHTTS---TTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHH--TTCEETTEECEE
T ss_pred CceEEECCCCCCCCHHHHHHHHhcc---CCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh--CCCccCCcEEEE
Confidence 4689999999999999999999997 79999999999999999999999999999999999999 489999999999
Q ss_pred ecCCC
Q 001183 83 SETHS 87 (1131)
Q Consensus 83 ~~a~~ 87 (1131)
+-|.+
T Consensus 162 ~~a~~ 166 (166)
T 3md3_A 162 NWAAK 166 (166)
T ss_dssp EESCC
T ss_pred EecCC
Confidence 98753
No 134
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=2.1e-12 Score=119.32 Aligned_cols=77 Identities=13% Similarity=0.235 Sum_probs=69.9
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||||||+.+|+++|+++|+++ |.|.+| +.++.+|+ ||||+|.+.++|++|++ + |+..++|+.|+|
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~---G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l--~g~~~~g~~l~V 76 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAF---GPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-Q--SQHSLGGHRLRV 76 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGT---SCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-C--SCCEETTEECCC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhc---CCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-c--CCeEECCEEEEE
Confidence 4689999999999999999999997 799986 88887887 99999999999999999 8 489999999999
Q ss_pred ecCCCCCC
Q 001183 83 SETHSDIV 90 (1131)
Q Consensus 83 ~~a~~~i~ 90 (1131)
+.|.+..-
T Consensus 77 ~~a~~~~~ 84 (94)
T 2e5g_A 77 RPREQKEF 84 (94)
T ss_dssp BCSCCSCC
T ss_pred EECCcCCC
Confidence 99876553
No 135
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.36 E-value=1.3e-12 Score=132.09 Aligned_cols=78 Identities=12% Similarity=0.241 Sum_probs=74.2
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
..+|+|+|||+.+|+++|+++|+++ |.|.+++|..++.+|++||||||+|.+.++|.+|+..+ ||..++|+.|+|
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~---G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~V 168 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSF---GPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL--NGMQLGDKKLLV 168 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTT---SCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHH--TTCEETTEECEE
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhc---CCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHc--CCCEECCeEEEE
Confidence 3689999999999999999999997 79999999999999999999999999999999999999 489999999999
Q ss_pred ecC
Q 001183 83 SET 85 (1131)
Q Consensus 83 ~~a 85 (1131)
+.|
T Consensus 169 ~~A 171 (172)
T 2g4b_A 169 QRA 171 (172)
T ss_dssp EEC
T ss_pred EeC
Confidence 876
No 136
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=3.1e-12 Score=119.21 Aligned_cols=77 Identities=12% Similarity=0.091 Sum_probs=69.9
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||||||+.+|+++|+++|+++ |+|.|.+|++. ||||||+|.+.++|++|+..++ +..++|+.|+|
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~-g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~--g~~~~g~~l~v 83 (99)
T 2cpd_A 15 VKILYVRNLMLSTSEEMIEKEFNNI-KPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALN--GKVLDGSPIEV 83 (99)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTT-STTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHS--SEEETTEEEEE
T ss_pred cCEEEEeCCCCCCCHHHHHHHHHhc-CCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhC--CCEeCCcEEEE
Confidence 4689999999999999999999995 66899999864 7899999999999999999994 89999999999
Q ss_pred ecCCCCCC
Q 001183 83 SETHSDIV 90 (1131)
Q Consensus 83 ~~a~~~i~ 90 (1131)
..|.+..-
T Consensus 84 ~~a~~~~~ 91 (99)
T 2cpd_A 84 TLAKPVDK 91 (99)
T ss_dssp ECCCCCCC
T ss_pred EECCCCCC
Confidence 99987653
No 137
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.36 E-value=2.4e-12 Score=120.25 Aligned_cols=74 Identities=15% Similarity=0.292 Sum_probs=68.4
Q ss_pred cccEEEEeCCCC-cCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCcee
Q 001183 2 VLATVWVSNIPQ-TAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNL 80 (1131)
Q Consensus 2 m~~ti~Vgnl~~-~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L 80 (1131)
++++|||||||+ .+++++|+++|+++ |.|.+|+| +||||||+|.+.++|++|+..+ ||..++|+.|
T Consensus 21 ~~~~l~V~nLp~~~~t~~~L~~~F~~~---G~v~~v~i--------~~g~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l 87 (97)
T 2xnq_A 21 MKSRLFIGNLPLKNVSKEDLFRIFSPY---GHIMQINI--------KNAFGFIQFDNPQSVRDAIEXE--SQEMNFGKKL 87 (97)
T ss_dssp TTCEEEEESCCSSCCCHHHHHHHHGGG---SCEEEEEE--------CSSEEEEEESSHHHHHHHHHHH--TTSEETTEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhc---CCEEEEEE--------eCCEEEEEECCHHHHHHHHHHc--CCCEECCEEE
Confidence 467999999998 99999999999998 79999999 3899999999999999999999 4899999999
Q ss_pred EeecCCCC
Q 001183 81 KISETHSD 88 (1131)
Q Consensus 81 ~V~~a~~~ 88 (1131)
+|..|...
T Consensus 88 ~V~~a~~~ 95 (97)
T 2xnq_A 88 ILEVSSSN 95 (97)
T ss_dssp EEEECCCC
T ss_pred EEEecCCC
Confidence 99988763
No 138
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.35 E-value=2.1e-12 Score=123.61 Aligned_cols=79 Identities=11% Similarity=0.169 Sum_probs=72.4
Q ss_pred cccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeE
Q 001183 2 VLATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLK 81 (1131)
Q Consensus 2 m~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~ 81 (1131)
.+++|||||||+.+|+++|+++|+.+ |.|.+|+|..+ +.+||||||+|.+.++|++|+..+ ||..++|+.|+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~---G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~ 78 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKY---GPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHL--SGFNVSNRYLV 78 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTT---SCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHH--TTCBSSSCBCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHc--CCCEECCeEEE
Confidence 46799999999999999999999998 79999999965 467999999999999999999999 48999999999
Q ss_pred eecCCCC
Q 001183 82 ISETHSD 88 (1131)
Q Consensus 82 V~~a~~~ 88 (1131)
|..|.++
T Consensus 79 v~~a~~~ 85 (115)
T 3lqv_A 79 VLYYNAN 85 (115)
T ss_dssp EEECCHH
T ss_pred EEEecCC
Confidence 9988753
No 139
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.35 E-value=9.9e-13 Score=136.49 Aligned_cols=82 Identities=20% Similarity=0.150 Sum_probs=77.2
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||+|||+.+++++|+++|+++ |.|..|+|..++ +|++||||||+|.+.++|++|+..+ ||..++|+.|+|
T Consensus 88 ~~~l~V~nLp~~~te~~L~~~F~~~---G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~l--ng~~l~Gr~l~V 161 (177)
T 2f3j_A 88 GAKLLVSNLDFGVSDADIQELFAEF---GTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQY--KGVPLDGRPMDI 161 (177)
T ss_dssp CEEEEEECCCSCCCHHHHHHHHHHT---SCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHS--TTCBCSSSBCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHh--CCCEECCEEEEE
Confidence 4689999999999999999999997 799999999999 9999999999999999999999999 489999999999
Q ss_pred ecCCCCCC
Q 001183 83 SETHSDIV 90 (1131)
Q Consensus 83 ~~a~~~i~ 90 (1131)
..|.....
T Consensus 162 ~~a~~~~~ 169 (177)
T 2f3j_A 162 QLVASQID 169 (177)
T ss_dssp EEESSGGG
T ss_pred EEecCCCC
Confidence 99987664
No 140
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.35 E-value=9.3e-13 Score=120.41 Aligned_cols=76 Identities=13% Similarity=0.188 Sum_probs=70.4
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||||||+.+++++|+++|+++ .|..|+|. ++||||||+|+++++|++|++.+ ||..++|+.|+|
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~----~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l--~g~~~~g~~l~V 72 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY----DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMF--HQYSFRGKDLIV 72 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS----CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHH--TTEEETTEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC----CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHh--CCCeECCcEEEE
Confidence 4689999999999999999999998 58888884 78999999999999999999999 489999999999
Q ss_pred ecCCCCCC
Q 001183 83 SETHSDIV 90 (1131)
Q Consensus 83 ~~a~~~i~ 90 (1131)
+.|+.+.+
T Consensus 73 ~~a~~~~~ 80 (88)
T 1wg1_A 73 QLQPTDAL 80 (88)
T ss_dssp EECCCCCC
T ss_pred EEcCCCce
Confidence 99999875
No 141
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.34 E-value=1.6e-12 Score=124.44 Aligned_cols=78 Identities=13% Similarity=0.040 Sum_probs=71.7
Q ss_pred cEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEee
Q 001183 4 ATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKIS 83 (1131)
Q Consensus 4 ~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V~ 83 (1131)
++|||+|||+.+|+++|+++|+++ |.|.+|+|. ++||||||+|.+.++|+.|+..+ ||..++|+.|+|.
T Consensus 11 ~~l~V~nLp~~~te~~L~~~F~~~---G~i~~v~i~------~~~g~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~V~ 79 (111)
T 1whx_A 11 TVILAKNLPAGTLAAEIQETFSRF---GSLGRVLLP------EGGITAIVEFLEPLEARKAFRHL--AYSKFHHVPLYLE 79 (111)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHTT---SCEEEEECC------SSSSCEEEEESCHHHHHHHHHHH--TTCBSSSSBCEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEe------CCCCEEEEEeCCHHHHHHHHHHh--CCCEECCeEEEEE
Confidence 589999999999999999999998 799999987 37899999999999999999999 4899999999999
Q ss_pred cCCCCCCCC
Q 001183 84 ETHSDIVPR 92 (1131)
Q Consensus 84 ~a~~~i~~~ 92 (1131)
-|..+....
T Consensus 80 ~a~~~~~~~ 88 (111)
T 1whx_A 80 WAPIGVFGA 88 (111)
T ss_dssp EEETTTTCC
T ss_pred ECCCCccCC
Confidence 999888643
No 142
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.34 E-value=2.3e-12 Score=119.65 Aligned_cols=75 Identities=15% Similarity=0.231 Sum_probs=69.2
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceec--Ccee
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFN--SQNL 80 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~--gr~L 80 (1131)
.++|||+|||+.+|+++|+++|+++ |.|.+|++.++ ||||||+|.+.++|++|++.++ +..++ |+.|
T Consensus 17 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~--g~~~~~~g~~l 85 (97)
T 1why_A 17 TTRLWVGGLGPNTSLAALAREFDRF---GSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMR--GFPLGGPDRRL 85 (97)
T ss_dssp CSCEEEECCCSSCCHHHHHHHHHTT---SCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHT--TCBCSSSSCBC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHC--CCEeCCCCcEE
Confidence 5789999999999999999999998 79999999854 7999999999999999999994 88899 9999
Q ss_pred EeecCCCC
Q 001183 81 KISETHSD 88 (1131)
Q Consensus 81 ~V~~a~~~ 88 (1131)
+|..|.++
T Consensus 86 ~V~~a~~~ 93 (97)
T 1why_A 86 RVDFAKSG 93 (97)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99998874
No 143
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.34 E-value=3.6e-12 Score=127.56 Aligned_cols=80 Identities=14% Similarity=0.172 Sum_probs=73.7
Q ss_pred cEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEee
Q 001183 4 ATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKIS 83 (1131)
Q Consensus 4 ~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V~ 83 (1131)
+||||||||+++|+++|+++|+.+ |.|.+++|..++ +|+++|||||+|.+.++|++|+..+ +|..++|+.|+|.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~---G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l--~~~~~~g~~i~v~ 74 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVG---GPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTL--NGKQIENNIVKIN 74 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGG---SCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEEE
T ss_pred CEEEECCCCCcCCHHHHHHHHHhc---CCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHc--CCCccCCCeeEEE
Confidence 589999999999999999999997 799999999998 5789999999999999999999999 4899999999999
Q ss_pred cCCCCC
Q 001183 84 ETHSDI 89 (1131)
Q Consensus 84 ~a~~~i 89 (1131)
.+....
T Consensus 75 ~~~~~~ 80 (166)
T 3md3_A 75 WAFQSQ 80 (166)
T ss_dssp ECCCCC
T ss_pred EcCCCC
Confidence 887654
No 144
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=2.3e-12 Score=116.42 Aligned_cols=74 Identities=18% Similarity=0.280 Sum_probs=67.5
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||||||+.+++++|+++|+++ |.|.+|++.. +||||||+|.+.++|++|+..+. ++..++|+.|+|
T Consensus 12 ~~~l~V~~l~~~~t~~~l~~~f~~~---G~i~~~~~~~------~kg~afV~f~~~~~A~~a~~~l~-~~~~~~g~~l~v 81 (85)
T 2ytc_A 12 ITTLYVGGLGDTITETDLRNHFYQF---GEIRTITVVQ------RQQCAFIQFATRQAAEVAAEKSF-NKLIVNGRRLNV 81 (85)
T ss_dssp CCCEEEECCTTTSCHHHHHHHHHTT---SCEEEEEEEG------GGTEEEEEESSHHHHHHHHHTTT-TTCEETTEECCE
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhC---CCEeEEEEEC------CCCEEEEEECCHHHHHHHHHHhc-CCeeECCCEEEE
Confidence 4689999999999999999999998 7999999995 58999999999999999999873 389999999999
Q ss_pred ecCC
Q 001183 83 SETH 86 (1131)
Q Consensus 83 ~~a~ 86 (1131)
+.|+
T Consensus 82 ~~ak 85 (85)
T 2ytc_A 82 KWGR 85 (85)
T ss_dssp EECC
T ss_pred EecC
Confidence 8764
No 145
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.34 E-value=9.6e-13 Score=132.50 Aligned_cols=79 Identities=18% Similarity=0.351 Sum_probs=74.4
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
..+|||+|||+++|+++|+++|+.+ |.|.+++|..++.||++||||||+|.+.++|.+|++ + ++..++|+.|+|
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~--~~~~~~g~~i~V 160 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQW---GTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-N--KFIDFKDRKIEI 160 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTT---SCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-C--SEECSSSSCEEE
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhC---ccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-C--CCEEeCCeEEEE
Confidence 3589999999999999999999997 799999999999999999999999999999999998 5 589999999999
Q ss_pred ecCCC
Q 001183 83 SETHS 87 (1131)
Q Consensus 83 ~~a~~ 87 (1131)
..|.+
T Consensus 161 ~~a~p 165 (167)
T 2cjk_A 161 KRAEP 165 (167)
T ss_dssp EECCC
T ss_pred eecCC
Confidence 99876
No 146
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.34 E-value=1.9e-12 Score=119.27 Aligned_cols=73 Identities=18% Similarity=0.225 Sum_probs=62.6
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
..+|||||||+++|+++|+++|+++ |.|.+|+|..+ |||||||+|+++++|++ ++.....++|+.|+|
T Consensus 11 ~~~l~V~~Lp~~~te~~L~~~F~~~---G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v 78 (89)
T 3d2w_A 11 GSKVFVGRCTEDMTAEELQQFFCQY---GEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHI 78 (89)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTT---SCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcc---CCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEE
Confidence 4689999999999999999999998 79999999874 89999999999998883 322245677999999
Q ss_pred ecCCC
Q 001183 83 SETHS 87 (1131)
Q Consensus 83 ~~a~~ 87 (1131)
+.|.+
T Consensus 79 ~~a~~ 83 (89)
T 3d2w_A 79 SNAEP 83 (89)
T ss_dssp EECC-
T ss_pred EEcCC
Confidence 99875
No 147
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.33 E-value=2.3e-12 Score=122.59 Aligned_cols=78 Identities=17% Similarity=0.195 Sum_probs=70.8
Q ss_pred cccEEEEeCCCCc-CCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCcee
Q 001183 2 VLATVWVSNIPQT-AIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNL 80 (1131)
Q Consensus 2 m~~ti~Vgnl~~~-~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L 80 (1131)
+.++|||||||+. +|+++|+++|+++ |.|..|+| +||||||+|++.++|++|+..+ ++..++|+.|
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~---G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l 92 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKY---GRVAGCSV--------HKGYAFVQYSNERHARAAVLGE--NGRVLAGQTL 92 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGG---SCCSEEEE--------ETTEEEEECSSSHHHHHHHHHH--TTCEETTEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhC---CCeEEEEE--------eCCEEEEEECCHHHHHHHHHHc--CCCEECCeEE
Confidence 4579999999999 9999999999998 79999999 7899999999999999999999 4899999999
Q ss_pred EeecCCCCCCCC
Q 001183 81 KISETHSDIVPR 92 (1131)
Q Consensus 81 ~V~~a~~~i~~~ 92 (1131)
+|..|.++--+|
T Consensus 93 ~V~~a~~~~~~~ 104 (110)
T 1wf1_A 93 DINMAGEPKPDR 104 (110)
T ss_dssp CEEESCCCCSCC
T ss_pred EEEECCCCCCCC
Confidence 999998655433
No 148
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=4.2e-12 Score=116.76 Aligned_cols=75 Identities=17% Similarity=0.218 Sum_probs=69.3
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||||||+.+|+++|+++|+++ |.|..|+|. |+||||+|++.++|++|+..+ |+..++|+.|+|
T Consensus 10 ~~~l~V~nLp~~~t~~~l~~~F~~~---G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~V 76 (92)
T 2dgt_A 10 STKLHVGNISPTCTNQELRAKFEEY---GPVIECDIV--------KDYAFVHMERAEDAVEAIRGL--DNTEFQGKRMHV 76 (92)
T ss_dssp SEEEEEESCCSSCCHHHHHHHHHTT---SCCCEEEEC--------SSEEEEEESCHHHHHHHHHHH--TTEEETTEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEE--------CCEEEEEECCHHHHHHHHHHh--CCCeeCCcEEEE
Confidence 5789999999999999999999998 799999997 459999999999999999999 489999999999
Q ss_pred ecCCCCCC
Q 001183 83 SETHSDIV 90 (1131)
Q Consensus 83 ~~a~~~i~ 90 (1131)
+.|.+..-
T Consensus 77 ~~a~~~~~ 84 (92)
T 2dgt_A 77 QLSTSRLR 84 (92)
T ss_dssp EESSCCCS
T ss_pred EEccCCCC
Confidence 99987654
No 149
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=4.2e-12 Score=116.27 Aligned_cols=75 Identities=9% Similarity=0.140 Sum_probs=69.1
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||||||+.+|+++|+++|+++ |.|..|+|. ||||||+|.+.++|++|+..++ |..++|+.|+|
T Consensus 9 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~--g~~~~g~~l~v 75 (90)
T 2dnp_A 9 TWKIFVGNVSAACTSQELRSLFERR---GRVIECDVV--------KDYAFVHMEKEADAKAAIAQLN--GKEVKGKRINV 75 (90)
T ss_dssp SCCEEEESCCTTCCHHHHHHHHHHH---SCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHT--TCEETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHcC---CCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhC--CCEECCcEEEE
Confidence 4689999999999999999999998 799999998 4599999999999999999994 89999999999
Q ss_pred ecCCCCCC
Q 001183 83 SETHSDIV 90 (1131)
Q Consensus 83 ~~a~~~i~ 90 (1131)
..|.+..-
T Consensus 76 ~~a~~~~~ 83 (90)
T 2dnp_A 76 ELSTKGQK 83 (90)
T ss_dssp EESCCCCC
T ss_pred EECCCCCC
Confidence 99988643
No 150
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.33 E-value=1.8e-12 Score=120.43 Aligned_cols=76 Identities=16% Similarity=0.294 Sum_probs=69.3
Q ss_pred ccEEEEeCCCC-cCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeE
Q 001183 3 LATVWVSNIPQ-TAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLK 81 (1131)
Q Consensus 3 ~~ti~Vgnl~~-~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~ 81 (1131)
.++|||||||+ .+|+++|+++|+++ |.|.+|+| +||||||+|.+.++|+.|+..+ +|..++|+.|+
T Consensus 10 ~~~l~V~nlp~~~~t~~~l~~~F~~~---G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~ 76 (96)
T 2kvi_A 10 KSRLFIGNLPLKNVSKEDLFRIFSPY---GHIMQINI--------KNAFGFIQFDNPQSVRDAIECE--SQEMNFGKKLI 76 (96)
T ss_dssp CEEEEEESSTTSCCCHHHHHHHHTTT---CCCCEEEE--------ETTEEEEEESCHHHHHHHHHHH--TCSSCBTTTBC
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhc---CCEEEEEE--------eCCEEEEEECCHHHHHHHHHHc--CCCeeCCcEEE
Confidence 46899999999 99999999999998 79999999 3899999999999999999999 48999999999
Q ss_pred eecCCCCCCC
Q 001183 82 ISETHSDIVP 91 (1131)
Q Consensus 82 V~~a~~~i~~ 91 (1131)
|..|....-+
T Consensus 77 V~~a~~~~~~ 86 (96)
T 2kvi_A 77 LEVSSSNARP 86 (96)
T ss_dssp EEEEECCCC-
T ss_pred EEEcCcCCCC
Confidence 9999876654
No 151
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=1.7e-12 Score=119.57 Aligned_cols=76 Identities=11% Similarity=0.224 Sum_probs=68.1
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCce-EEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCC-ceecCcee
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNS-VFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDK-LVFNSQNL 80 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~-V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~-~~~~gr~L 80 (1131)
.++|||||||+.+|+++|+++|+++ |. |..+.+ .+||||||+|++.++|++|+..++ | ..++|+.|
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~F~~~---G~vv~~~~~-------~~~g~afV~f~~~~~A~~A~~~l~--g~~~~~g~~l 75 (93)
T 2cqh_A 8 MNKLYIGNLSPAVTADDLRQLFGDR---KLPLAGQVL-------LKSGYAFVDYPDQNWAIRAIETLS--GKVELHGKIM 75 (93)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHT---TCCCSSCEE-------EETTEEEECCSCHHHHHHHHHHHT--TTCEETTEEC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHc---CCceEEEEE-------cCCCEEEEEECCHHHHHHHHHHcc--CCeeECCEEE
Confidence 4689999999999999999999997 68 666666 368999999999999999999994 8 99999999
Q ss_pred EeecCCCCCC
Q 001183 81 KISETHSDIV 90 (1131)
Q Consensus 81 ~V~~a~~~i~ 90 (1131)
+|..|.+..-
T Consensus 76 ~v~~a~~~~~ 85 (93)
T 2cqh_A 76 EVDYSVSKKL 85 (93)
T ss_dssp EEEECCCCCC
T ss_pred EEEEccCccc
Confidence 9999988654
No 152
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.32 E-value=3e-12 Score=122.06 Aligned_cols=75 Identities=16% Similarity=0.198 Sum_probs=69.4
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||||||+.+|+++|+++|+++ |.|..|+|. ||||||+|.+.++|++|+..+ ||..++|+.|+|
T Consensus 31 ~~~l~V~nLp~~~t~~~L~~~F~~~---G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~V 97 (108)
T 2jvo_A 31 NTRLFVRPFPLDVQESELNEIFGPF---GPMKEVKIL--------NGFAFVEFEEAESAAKAIEEV--HGKSFANQPLEV 97 (108)
T ss_dssp CSEEEECSSCTTCCHHHHHHHHTTT---SCCCEEEEE--------TTEEEEECSSHHHHHHHHHHH--TTCEETTEECEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhc---CCEEEEEEE--------CCEEEEEECCHHHHHHHHHHc--CCCEECCeEEEE
Confidence 4689999999999999999999998 799999998 899999999999999999999 489999999999
Q ss_pred ecCCCCCC
Q 001183 83 SETHSDIV 90 (1131)
Q Consensus 83 ~~a~~~i~ 90 (1131)
..|.++.-
T Consensus 98 ~~a~~~~~ 105 (108)
T 2jvo_A 98 VYSKLPAK 105 (108)
T ss_dssp ESCSCCC-
T ss_pred EEecCCCC
Confidence 99987653
No 153
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.32 E-value=3.6e-12 Score=131.87 Aligned_cols=81 Identities=11% Similarity=0.228 Sum_probs=76.7
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
..+|||+|||+.+++++|+++|+.+ |.|..|+|..++.+|++||||||+|.+.++|++|+..+ ||..++|+.|+|
T Consensus 114 ~~~l~v~nl~~~~~~~~l~~~f~~~---G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v 188 (198)
T 2yh0_A 114 AHKLFIGGLPNYLNDDQVKELLTSF---GPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL--NGMQLGDKKLLV 188 (198)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTB---SCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHH--TTCEETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHc---CCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHc--CCCEECCEEEEE
Confidence 3689999999999999999999997 79999999999999999999999999999999999999 489999999999
Q ss_pred ecCCCC
Q 001183 83 SETHSD 88 (1131)
Q Consensus 83 ~~a~~~ 88 (1131)
..|.++
T Consensus 189 ~~a~~~ 194 (198)
T 2yh0_A 189 QRASVG 194 (198)
T ss_dssp EESCCC
T ss_pred EECCCC
Confidence 998764
No 154
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.31 E-value=5.3e-13 Score=132.90 Aligned_cols=81 Identities=15% Similarity=0.168 Sum_probs=70.6
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEE--Eeec---CCCCCccceEEEEeCChHHHHHHHHhhcCCCceecC
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALE--IITD---RSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNS 77 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~--i~~d---r~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~g 77 (1131)
.++|||||||+++|+++|+++|+.+ |.|.+|. ++.| +.||++||||||+|.+.++|.+|+..+ ||..++|
T Consensus 45 ~~~l~V~nLp~~~te~~L~~~F~~~---G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~l--ng~~~~g 119 (143)
T 3egn_A 45 NCRIYVKNLAKHVQEKDLKYIFGRY---VDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEA--NGYVLFG 119 (143)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHGGG---CCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHH--TTBEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHh---CCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHh--CCCEeCC
Confidence 4689999999999999999999997 7888762 2222 348999999999999999999999999 4899999
Q ss_pred ceeEeecCCCC
Q 001183 78 QNLKISETHSD 88 (1131)
Q Consensus 78 r~L~V~~a~~~ 88 (1131)
+.|+|..|...
T Consensus 120 ~~l~V~~a~~~ 130 (143)
T 3egn_A 120 KPMVVQFARSA 130 (143)
T ss_dssp EECEEEECCCS
T ss_pred cEEEEEECCCC
Confidence 99999998663
No 155
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=2.7e-12 Score=124.03 Aligned_cols=80 Identities=14% Similarity=0.045 Sum_probs=70.6
Q ss_pred ccEEEE--eCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCcee-----
Q 001183 3 LATVWV--SNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVF----- 75 (1131)
Q Consensus 3 ~~ti~V--gnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~----- 75 (1131)
+++||| ||||+++++++|+++|++| |+|.+|.|.+ +||||||+|++.++|++|++.+| |.++
T Consensus 25 t~~L~V~Ng~L~~~~te~~L~~~F~~f---G~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~ln--G~~~~~~lg 93 (114)
T 2cq2_A 25 TQSLVVANGGLGNGVSRNQLLPVLEKC---GLVDALLMPP------NKPYSFARYRTTEESKRAYVTLN--GKEVVDDLG 93 (114)
T ss_dssp CSEEEEETCTGGGTCCHHHHHHHHHHH---SCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTT--TCEEECTTS
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHhc---CCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhC--CCEEccccC
Confidence 568999 8899999999999999998 7999998864 37999999999999999999994 8877
Q ss_pred cCceeEeecCCCCCCCCC
Q 001183 76 NSQNLKISETHSDIVPRP 93 (1131)
Q Consensus 76 ~gr~L~V~~a~~~i~~~~ 93 (1131)
.|++|.|.-|..-+.-+|
T Consensus 94 ~g~~l~v~~a~~~p~~~~ 111 (114)
T 2cq2_A 94 QKITLYLNFVEKVQWSGP 111 (114)
T ss_dssp CEEECEEEEESCCCCSSC
T ss_pred CCcEEEEEecccCcccCC
Confidence 799999999987665343
No 156
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.31 E-value=4e-12 Score=131.30 Aligned_cols=80 Identities=24% Similarity=0.297 Sum_probs=73.5
Q ss_pred cEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEee
Q 001183 4 ATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKIS 83 (1131)
Q Consensus 4 ~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V~ 83 (1131)
++|||+|||+++|+++|+++|+.+ |.|..|+|..++.+|++||||||+|.+.++|.+|+... +..++|+.|+|+
T Consensus 105 ~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~---~~~~~G~~i~v~ 178 (196)
T 1l3k_A 105 KKIFVGGIKEDTEEHHLRDYFEQY---GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQK---YHTVNGHNCEVR 178 (196)
T ss_dssp SEEEEECCTTTCCHHHHHHHHTTT---SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCS---CCEETTEECEEE
T ss_pred ceEEEeCCCCCCCHHHHHHHHhcC---CCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhC---CcEECCEEEEEE
Confidence 689999999999999999999998 79999999999999999999999999999999999863 789999999999
Q ss_pred cCCCCC
Q 001183 84 ETHSDI 89 (1131)
Q Consensus 84 ~a~~~i 89 (1131)
.|.+.-
T Consensus 179 ~a~~k~ 184 (196)
T 1l3k_A 179 KALSKQ 184 (196)
T ss_dssp ECC---
T ss_pred ecCChh
Confidence 987755
No 157
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.30 E-value=7.2e-12 Score=117.70 Aligned_cols=75 Identities=13% Similarity=0.095 Sum_probs=69.3
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||+|||+.+|+++|+++|+++ |.|..|+|. ||||||+|.+.++|++|++.++ +..++|+.|+|
T Consensus 11 ~~~l~V~nl~~~~t~~~l~~~F~~~---G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~--g~~~~g~~l~v 77 (103)
T 2dgu_A 11 VKVLFVRNLANTVTEEILEKAFSQF---GKLERVKKL--------KDYAFIHFDERDGAVKAMEEMN--GKDLEGENIEI 77 (103)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHH---SCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHT--TEEETTEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHC--CCccCCCEEEE
Confidence 3689999999999999999999998 799999987 6799999999999999999994 89999999999
Q ss_pred ecCCCCCC
Q 001183 83 SETHSDIV 90 (1131)
Q Consensus 83 ~~a~~~i~ 90 (1131)
..|.+..-
T Consensus 78 ~~a~~~~~ 85 (103)
T 2dgu_A 78 VFAKPPDQ 85 (103)
T ss_dssp EECCCCCC
T ss_pred EEcCCCcc
Confidence 99988764
No 158
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.30 E-value=4.3e-12 Score=133.11 Aligned_cols=81 Identities=12% Similarity=0.178 Sum_probs=72.7
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
+++|||+|||+++|+++|+++|+.+ |.|.+|+|+.++.+|++||||||+|.+.++|++|++.++ +..++|+.|+|
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~---G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~--~~~~~g~~l~v 102 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPF---GPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMN--SVMLGGRNIKV 102 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGG---SCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHS--SCCCC-CCCEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhC---CCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHcc--CCeeCCeeEEE
Confidence 4689999999999999999999998 799999999999999999999999999999999999984 89999999999
Q ss_pred ecCCCC
Q 001183 83 SETHSD 88 (1131)
Q Consensus 83 ~~a~~~ 88 (1131)
..+...
T Consensus 103 ~~~~~~ 108 (216)
T 2qfj_A 103 GRPSNI 108 (216)
T ss_dssp ECCSCC
T ss_pred ecCCCc
Confidence 876553
No 159
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.30 E-value=3.6e-12 Score=127.90 Aligned_cols=76 Identities=11% Similarity=0.089 Sum_probs=70.6
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||||||+.+|+++|+++|+++ |.|.+|+|..+ +||||||+|.+.++|+.|+..++ |..++|+.|+|
T Consensus 73 ~~~l~V~nl~~~~t~~~l~~~F~~~---G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~--g~~~~g~~l~v 142 (150)
T 2i2y_A 73 DCKVYVGNLGNNGNKTELERAFGYY---GPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELD--GRTLCGCRVRV 142 (150)
T ss_dssp SCEEEEESCCSCCSCHHHHHHHHHH---SCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHS--SSCSSSSCCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhh---CCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcC--CCEECCeEEEE
Confidence 4689999999999999999999998 79999999876 79999999999999999999994 89999999999
Q ss_pred ecCCCC
Q 001183 83 SETHSD 88 (1131)
Q Consensus 83 ~~a~~~ 88 (1131)
..|.+.
T Consensus 143 ~~a~~~ 148 (150)
T 2i2y_A 143 ELSNGE 148 (150)
T ss_dssp EECCCC
T ss_pred EEcCCC
Confidence 998763
No 160
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.30 E-value=3.2e-12 Score=128.66 Aligned_cols=78 Identities=13% Similarity=0.252 Sum_probs=72.5
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
+++|||||||+++|+++|+++|+++ |.|.+|+|+.++.||++||||||+|.++++|++|+.. +..++|+.|+|
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~----~~~~~g~~i~v 75 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKY---GTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT----QHILDGKVIDP 75 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTT---CCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS----CCEETTEECCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhC---CCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc----ccccCCeEccc
Confidence 5799999999999999999999997 7999999999999999999999999999999999984 46899999999
Q ss_pred ecCCC
Q 001183 83 SETHS 87 (1131)
Q Consensus 83 ~~a~~ 87 (1131)
..+.+
T Consensus 76 ~~~~~ 80 (167)
T 2cjk_A 76 KRAIP 80 (167)
T ss_dssp EECCC
T ss_pred ccccc
Confidence 87754
No 161
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.29 E-value=3.6e-12 Score=118.84 Aligned_cols=76 Identities=12% Similarity=0.210 Sum_probs=69.7
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||||||+.+|+++|+++|+++ |.|..|++.. +||||||+|.+.++|++|+..++ +..++|+.|+|
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~~~~------~kg~afV~f~~~~~a~~a~~~l~--g~~~~g~~l~v 83 (99)
T 2cpj_A 15 RSRLFVGNLPPDITEEEMRKLFEKY---GKAGEVFIHK------DKGFGFIRLETRTLAEIAKVELD--NMPLRGKQLRV 83 (99)
T ss_dssp TTEEEEESCCTTCCHHHHHHHTSTT---CCCSEEEEET------TTTEEEEECSSSHHHHHHHHHHT--TCCBTTBCCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhc---CCeEEEEEec------CCCEEEEEECCHHHHHHHHHHhC--CCEeCCceEEE
Confidence 4689999999999999999999998 7999999984 48999999999999999999994 89999999999
Q ss_pred ecCCCCC
Q 001183 83 SETHSDI 89 (1131)
Q Consensus 83 ~~a~~~i 89 (1131)
..|.+..
T Consensus 84 ~~a~~~~ 90 (99)
T 2cpj_A 84 RFACHSA 90 (99)
T ss_dssp EESSCCS
T ss_pred EEcCCCC
Confidence 9998754
No 162
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=5.5e-12 Score=116.64 Aligned_cols=77 Identities=19% Similarity=0.167 Sum_probs=70.6
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEE-EeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeE
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALE-IITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLK 81 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~-i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~ 81 (1131)
..+|||||||+.+|+++|+++|+.+ |.|.+|+ |..++.+|+ |||+|.+.++|++|+..+ ||..++|+.|+
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l--~g~~~~g~~l~ 85 (96)
T 2e44_A 15 IRKLQIRNIPPHLQWEVLDSLLVQY---GVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKL--NGFQLENFTLK 85 (96)
T ss_dssp CCCEEEEEECSSSCHHHHHHHHHHH---SCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHH--TTCBCSSCBCE
T ss_pred CCEEEEEcCCCCCCHHHHHHHHHhc---CCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHh--CCCEECCcEEE
Confidence 4689999999999999999999998 7999995 888887765 999999999999999999 48999999999
Q ss_pred eecCCCC
Q 001183 82 ISETHSD 88 (1131)
Q Consensus 82 V~~a~~~ 88 (1131)
|+.|.+.
T Consensus 86 V~~a~~~ 92 (96)
T 2e44_A 86 VAYIPDE 92 (96)
T ss_dssp EEECCCC
T ss_pred EEEcCcc
Confidence 9998875
No 163
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.29 E-value=5.8e-12 Score=133.53 Aligned_cols=78 Identities=15% Similarity=0.310 Sum_probs=72.8
Q ss_pred cEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEee
Q 001183 4 ATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKIS 83 (1131)
Q Consensus 4 ~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V~ 83 (1131)
.+|||+|||+++|+++|+++|+.+ |.|.+|+|..|+ +.+||||||+|.+.++|++|+..+ ||..++||.|+|+
T Consensus 104 ~~l~v~nl~~~~t~~~l~~~F~~~---G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~l--ng~~~~g~~i~V~ 176 (213)
T 4f02_A 104 GNIFIKNLDKSIDNKALYDTFSAF---GNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM--NGMLLNDRKVFVG 176 (213)
T ss_dssp TEEEEESCCTTCCHHHHHHHHGGG---SCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEEE
T ss_pred ccceECCcccccHHHHHHHHHhhc---CCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHh--CCCEECCEEEEEE
Confidence 589999999999999999999998 799999999987 568999999999999999999999 4899999999999
Q ss_pred cCCCC
Q 001183 84 ETHSD 88 (1131)
Q Consensus 84 ~a~~~ 88 (1131)
.|.+.
T Consensus 177 ~a~~~ 181 (213)
T 4f02_A 177 RFKSR 181 (213)
T ss_dssp ECCCH
T ss_pred EcCCC
Confidence 98763
No 164
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.28 E-value=1e-11 Score=118.30 Aligned_cols=83 Identities=13% Similarity=-0.057 Sum_probs=73.5
Q ss_pred cccEEEEeCCCC-----cCCHHHHHHHHhhccCCceEEEEEEeecCCC-CCccceEEEEeCChHHHHHHHHhhcCCCcee
Q 001183 2 VLATVWVSNIPQ-----TAIAKDLLLFLESKLGKNSVFALEIITDRSN-WKSRGIGRVQFTSLDFKSKAQNLSLNDKLVF 75 (1131)
Q Consensus 2 m~~ti~Vgnl~~-----~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~t-g~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~ 75 (1131)
.+++|+|.|+.. ..+++||++.|+.| |+|.+|+|..++.+ ++|||||||+|+++++|.+|+..+ ||..|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~---G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~l--nG~~~ 81 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKY---GKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDL--NGRYF 81 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGG---SCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHH--TTCEE
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhc---CCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHH--CCCEE
Confidence 467999999973 34789999999998 79999999999864 799999999999999999999999 49999
Q ss_pred cCceeEeecCCCCC
Q 001183 76 NSQNLKISETHSDI 89 (1131)
Q Consensus 76 ~gr~L~V~~a~~~i 89 (1131)
+||.|+|+.++++-
T Consensus 82 ~Gr~i~v~~a~~~~ 95 (105)
T 2pe8_A 82 GGRVVKACFYNLDK 95 (105)
T ss_dssp TTEECEEEECCHHH
T ss_pred CCcEEEEEEcCHHH
Confidence 99999999987644
No 165
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.28 E-value=7.4e-12 Score=131.63 Aligned_cols=78 Identities=19% Similarity=0.241 Sum_probs=71.6
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||||||+.+|+++|+++|+++ |.|.+|+|..++ +|++||||||+|++.++|++|+..+ +..++||.|+|
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~---G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~---~~~~~Gr~l~V 181 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDK---GQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP---GQKYKETDLLI 181 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTS---CCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT---TCEETTEECEE
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcC---CCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC---CCeECCEEEEE
Confidence 3689999999999999999999997 799999999988 5999999999999999999999877 35999999999
Q ss_pred ecCCC
Q 001183 83 SETHS 87 (1131)
Q Consensus 83 ~~a~~ 87 (1131)
..+.+
T Consensus 182 ~~~~~ 186 (193)
T 2voo_A 182 LFKDD 186 (193)
T ss_dssp EETTT
T ss_pred EEhHH
Confidence 97654
No 166
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.27 E-value=6.3e-12 Score=147.84 Aligned_cols=82 Identities=12% Similarity=0.169 Sum_probs=77.8
Q ss_pred cEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEee
Q 001183 4 ATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKIS 83 (1131)
Q Consensus 4 ~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V~ 83 (1131)
++|||||||+.+|+++|+++|+.+ |.|..|+|+.++.||.++|||||+|.+.++|.+||.++ ||..|+|+.|+|.
T Consensus 103 ~~lfV~nL~~~~te~~L~~~F~~~---G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l--ng~~i~gr~i~V~ 177 (437)
T 3pgw_S 103 KTLFVARVNYDTTESKLRREFEVY---GPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHA--DGKKIDGRRVLVD 177 (437)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHc---CCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHc--CCCEECCEEEEEE
Confidence 689999999999999999999997 79999999999999999999999999999999999999 4899999999999
Q ss_pred cCCCCCC
Q 001183 84 ETHSDIV 90 (1131)
Q Consensus 84 ~a~~~i~ 90 (1131)
.|.....
T Consensus 178 ~a~~~~~ 184 (437)
T 3pgw_S 178 VERGRTV 184 (437)
T ss_pred EeCCCCC
Confidence 9987554
No 167
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=1.8e-11 Score=113.73 Aligned_cols=75 Identities=13% Similarity=0.093 Sum_probs=68.8
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||||+ .+|+++|+++|+++ |.|.+|+|. ++||||||+|.+.++|++|+..+ ++..++|+.|+|
T Consensus 15 ~~~l~V~n~--~~t~~~l~~~F~~~---G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l--~g~~~~g~~l~v 81 (97)
T 1x5p_A 15 GNTLYVYGE--DMTPTLLRGAFSPF---GNIIDLSMD------PPRNCAFVTYEKMESADQAVAEL--NGTQVESVQLKV 81 (97)
T ss_dssp CSEEEEECS--SCCHHHHHHHHTTT---SCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHT--TTEEETTEEEEE
T ss_pred CCEEEEcCC--CCCHHHHHHHHhhC---CCEEEEEec------CCCCEEEEEECCHHHHHHHHHHh--CCCeECCeEEEE
Confidence 579999995 89999999999998 799999993 68999999999999999999999 489999999999
Q ss_pred ecCCCCCC
Q 001183 83 SETHSDIV 90 (1131)
Q Consensus 83 ~~a~~~i~ 90 (1131)
..|.+...
T Consensus 82 ~~a~~~~~ 89 (97)
T 1x5p_A 82 NIARKQPM 89 (97)
T ss_dssp ECCSSCCC
T ss_pred EECCCCCC
Confidence 99988664
No 168
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.26 E-value=1e-11 Score=112.44 Aligned_cols=73 Identities=27% Similarity=0.494 Sum_probs=64.1
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhcc---C-----CceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCce
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKL---G-----KNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLV 74 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~---G-----~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~ 74 (1131)
.++|||||||+++|+++|+++|+++. | .+.|.++++.. +||||||+|.+.++|++|+ .+ ||..
T Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~------~kg~afV~f~~~~~a~~A~-~l--~g~~ 76 (87)
T 2hzc_A 6 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AF--DGII 76 (87)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS------SSSEEEEEESSHHHHHHHG-GG--TTCE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC------CCcEEEEEcCCHHHHHHHH-hc--CCCE
Confidence 57999999999999999999999961 2 02799999874 3899999999999999999 88 4899
Q ss_pred ecCceeEeec
Q 001183 75 FNSQNLKISE 84 (1131)
Q Consensus 75 ~~gr~L~V~~ 84 (1131)
++||.|+|+.
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999983
No 169
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.26 E-value=1.2e-11 Score=124.40 Aligned_cols=78 Identities=18% Similarity=0.281 Sum_probs=72.9
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecC--cee
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNS--QNL 80 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~g--r~L 80 (1131)
..+|+|+|||..+++++|+++|+.+ |.|..+++..++.+|++||||||+|.+.++|.+|+..++ |..++| ++|
T Consensus 89 ~~~l~v~nl~~~~t~~~l~~~f~~~---G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~--g~~~~g~~~~l 163 (168)
T 1b7f_A 89 DTNLYVTNLPRTITDDQLDTIFGKY---GSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALN--NVIPEGGSQPL 163 (168)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHTSS---SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT--TCCCTTCSSCC
T ss_pred CCCEEEeCCCCCCCHHHHHHhhhcC---CcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhc--CCEecCCCeEE
Confidence 4689999999999999999999997 799999999999999999999999999999999999994 889977 999
Q ss_pred EeecC
Q 001183 81 KISET 85 (1131)
Q Consensus 81 ~V~~a 85 (1131)
+|+-|
T Consensus 164 ~V~~A 168 (168)
T 1b7f_A 164 SVRLA 168 (168)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99754
No 170
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.25 E-value=1.3e-11 Score=124.64 Aligned_cols=96 Identities=25% Similarity=0.367 Sum_probs=78.5
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCC--CccceEEEEeCChHHHHHHHHhhcCCCceec---C
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNW--KSRGIGRVQFTSLDFKSKAQNLSLNDKLVFN---S 77 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg--~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~---g 77 (1131)
.++|||||||+++|+++|+++|+++ |.|.+|+|..++.+| ++||||||+|.+.++|++|++.++ +..+. +
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~---G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~--~~~~~~~~~ 77 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQY---GAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALH--NMKVLPGMH 77 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTT---SCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHT--TTCCCTTCS
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhC---CCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhc--CcEEccCCc
Confidence 5789999999999999999999997 799999999999887 999999999999999999999995 55443 6
Q ss_pred ceeEeecCCCCCCCCCCCCcceecCeEEEEeee
Q 001183 78 QNLKISETHSDIVPRPVKAQHRVEDGVLHVGVM 110 (1131)
Q Consensus 78 r~L~V~~a~~~i~~~~~~~~~~~~~~~~~~g~~ 110 (1131)
+.+.+..+....-. ....-+|.+|.+
T Consensus 78 ~~~~~~~~~~~~~~-------~~~~~~l~v~nl 103 (175)
T 3nmr_A 78 HPIQMKPADSEKNN-------AVEDRKLFIGMI 103 (175)
T ss_dssp SCCEEEECGGGCCS-------CGGGSEEEEESC
T ss_pred cceEEccccccccc-------cCCCCeEEEcCC
Confidence 77777776543321 123446777665
No 171
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.24 E-value=1.1e-11 Score=119.29 Aligned_cols=74 Identities=22% Similarity=0.277 Sum_probs=66.0
Q ss_pred cEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCce----
Q 001183 4 ATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQN---- 79 (1131)
Q Consensus 4 ~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~---- 79 (1131)
.+|||+|||+.+|+++|+++|+++ |.|..|+|..+ |||||+|++.++|++||+.+ |+..++|+.
T Consensus 17 ~~l~V~nLp~~~t~~~l~~~F~~~---G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l--~g~~~~gr~~~~~ 84 (115)
T 3beg_B 17 NRVVVSGLPPSGSWQDLKDHMREA---GDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKL--DNTKFRSHEGETA 84 (115)
T ss_dssp CCEEEEECCSSCCTTHHHHHHGGG---SCEEEEEECTT-------SEEEEEESSHHHHHHHHHHH--TTCBCCCTTSCCC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEecC-------CEEEEEECCHHHHHHHHHHh--CCCEECCcEeeeE
Confidence 579999999999999999999997 79999999876 99999999999999999999 489999998
Q ss_pred -eEeecCCCCC
Q 001183 80 -LKISETHSDI 89 (1131)
Q Consensus 80 -L~V~~a~~~i 89 (1131)
++|.++.+..
T Consensus 85 ~i~v~~~~~~~ 95 (115)
T 3beg_B 85 YIRVKVDGPRS 95 (115)
T ss_dssp BCEEEECC---
T ss_pred EEEeccCCCCC
Confidence 8887776644
No 172
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.24 E-value=1.6e-11 Score=125.70 Aligned_cols=77 Identities=12% Similarity=0.006 Sum_probs=69.1
Q ss_pred cEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecC--ceeE
Q 001183 4 ATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNS--QNLK 81 (1131)
Q Consensus 4 ~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~g--r~L~ 81 (1131)
.+||||||++.+|+++|+++|+.| |.|.+|+|.++ ++||||||||++.++|+.|++.++ |..+.| +.|+
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~f---G~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~Ln--G~~i~g~g~~L~ 117 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKF---GTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLD--GQNIYNACCTLR 117 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHH---SCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHST--TBCSSSSCSCEE
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhc---CCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhC--CCEecCCCcEEE
Confidence 469999999999999999999998 79999999754 378999999999999999999994 888844 9999
Q ss_pred eecCCCCC
Q 001183 82 ISETHSDI 89 (1131)
Q Consensus 82 V~~a~~~i 89 (1131)
|+.|.+.-
T Consensus 118 V~~Ak~~~ 125 (164)
T 1sjr_A 118 IDFSKLTS 125 (164)
T ss_dssp EEECSSSS
T ss_pred EEEecCCc
Confidence 99998764
No 173
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=9.1e-12 Score=113.54 Aligned_cols=77 Identities=16% Similarity=0.185 Sum_probs=66.1
Q ss_pred cccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeE
Q 001183 2 VLATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLK 81 (1131)
Q Consensus 2 m~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~ 81 (1131)
..++|||||||+++|+++|+++|+++ |.|..|+|..+ +||||||+|++.++|++| +...+.++|+.|+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~---G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~----~~~~~~~~g~~l~ 71 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQY---GDVMDVFIPKP-----FRAFAFVTFADDQIAQSL----CGEDLIIKGISVH 71 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTT---SCCCEEECCSS-----CCSCCEEECSCHHHHHHT----TTCEEEETTEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHc---CCeeEEEEecC-----CCCEEEEEECCHHHHHHH----hcCCceeCCEEEE
Confidence 46799999999999999999999998 79999999864 899999999999998753 2225678999999
Q ss_pred eecCCCCCC
Q 001183 82 ISETHSDIV 90 (1131)
Q Consensus 82 V~~a~~~i~ 90 (1131)
|..|.+..-
T Consensus 72 v~~a~~~~~ 80 (88)
T 1wf0_A 72 ISNAEPKHN 80 (88)
T ss_dssp EECCCCCCC
T ss_pred EEecCCCCC
Confidence 999887553
No 174
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.23 E-value=1.6e-11 Score=130.21 Aligned_cols=78 Identities=8% Similarity=0.069 Sum_probs=71.3
Q ss_pred ccEEEEeCCC-CcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeE
Q 001183 3 LATVWVSNIP-QTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLK 81 (1131)
Q Consensus 3 ~~ti~Vgnl~-~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~ 81 (1131)
+.+||||||| +.+|+++|+++|+.+ |.|.+|+|+.+ +||||||+|+++++|+.|++.+ ||..+.|+.|+
T Consensus 4 ~~~l~V~nL~~~~~~~~~L~~~F~~~---G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l--ng~~~~g~~l~ 73 (205)
T 3tyt_A 4 SPVLMVYGLDQSKMNCDRVFNVFCLY---GNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHL--NNNFMFGQKMN 73 (205)
T ss_dssp CSEEEEECCCTTTCCHHHHHHHHTTT---SCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHH--TTCEETTEECE
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhc---CCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHh--CCCEECCceEE
Confidence 4689999999 899999999999998 79999999864 4899999999999999999999 49999999999
Q ss_pred eecCCCCCC
Q 001183 82 ISETHSDIV 90 (1131)
Q Consensus 82 V~~a~~~i~ 90 (1131)
|+.|....+
T Consensus 74 v~~s~~~~~ 82 (205)
T 3tyt_A 74 VCVSKQPAI 82 (205)
T ss_dssp EEECSCSCC
T ss_pred EEEccCCcc
Confidence 999876553
No 175
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.23 E-value=2.1e-11 Score=122.10 Aligned_cols=77 Identities=19% Similarity=0.226 Sum_probs=71.1
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCce--e
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQN--L 80 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~--L 80 (1131)
..+|+|+|||..+++++|+++|+.+ |.|..+++..++.+|++||||||+|.+.++|.+|+..++ |..++|+. |
T Consensus 88 ~~~l~v~nl~~~~t~~~l~~~f~~~---G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~--g~~~~g~~~~i 162 (167)
T 1fxl_A 88 DANLYVSGLPKTMTQKELEQLFSQY---GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN--GQKPSGATEPI 162 (167)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHGGG---SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT--TCCCTTCSSCC
T ss_pred CCcEEECCCCCcCCHHHHHHHHHhc---CCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhc--CCccCCCccce
Confidence 3579999999999999999999998 799999999999999999999999999999999999994 88999976 6
Q ss_pred Eeec
Q 001183 81 KISE 84 (1131)
Q Consensus 81 ~V~~ 84 (1131)
+|+-
T Consensus 163 ~v~~ 166 (167)
T 1fxl_A 163 TVKF 166 (167)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6653
No 176
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.22 E-value=2.3e-11 Score=122.86 Aligned_cols=78 Identities=15% Similarity=0.187 Sum_probs=70.1
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCce-ec--Cce
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLV-FN--SQN 79 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~-~~--gr~ 79 (1131)
..+|||+|||+++|+++|+++|+.+ |.|.+++|..++ +|++||||||+|.+.++|.+|+..++ |.. ++ ||+
T Consensus 95 ~~~l~v~nl~~~~t~~~l~~~F~~~---G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~--g~~~~~g~~~~ 168 (175)
T 3nmr_A 95 DRKLFIGMISKKCTENDIRVMFSSF---GQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMH--QAQTMEGCSSP 168 (175)
T ss_dssp GSEEEEESCCTTCCHHHHHHHHGGG---SCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHT--TSCCCTTCSSC
T ss_pred CCeEEEcCCCCcCCHHHHHHHHHhC---CCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhc--CCcccCCCCCC
Confidence 3689999999999999999999998 799999999997 69999999999999999999999995 554 44 499
Q ss_pred eEeecCC
Q 001183 80 LKISETH 86 (1131)
Q Consensus 80 L~V~~a~ 86 (1131)
|+|+-|+
T Consensus 169 l~V~~ad 175 (175)
T 3nmr_A 169 MVVKFAD 175 (175)
T ss_dssp CEEEECC
T ss_pred eEEEecC
Confidence 9998764
No 177
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.22 E-value=2.5e-11 Score=112.85 Aligned_cols=71 Identities=17% Similarity=0.196 Sum_probs=63.9
Q ss_pred EEEEeCCCCcCCHHHHH----HHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCcee
Q 001183 5 TVWVSNIPQTAIAKDLL----LFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNL 80 (1131)
Q Consensus 5 ti~Vgnl~~~~t~~~L~----~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L 80 (1131)
+|||+|||+.+++++|+ ++|++| | |.|..| || |||||+|.+.++|++|++.+ +|..+.||++
T Consensus 11 ~lYV~NL~~~~~~~~lk~~L~~lF~~y-G-G~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l--~G~~l~gr~i 76 (96)
T 2diu_A 11 LLYVYNLPANKDGKSVSNRLRRLSDNC-G-GKVLSI-------TG---CSAILRFINQDSAERAQKRM--ENEDVFGNRI 76 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHTT-T-CCEEEC-------CT---TCEEEEESSHHHHHHHHHHH--TTCCSSSSCC
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHc-C-CeeEEE-------ec---CEEEEEECCHHHHHHHHHHh--cCCccCCceE
Confidence 49999999999999855 899996 5 599998 45 99999999999999999999 4999999999
Q ss_pred EeecCCCCC
Q 001183 81 KISETHSDI 89 (1131)
Q Consensus 81 ~V~~a~~~i 89 (1131)
+|+-|+.+.
T Consensus 77 ~v~~A~~~s 85 (96)
T 2diu_A 77 IVSFTPKNR 85 (96)
T ss_dssp EEESSCCSC
T ss_pred EEEecCCCc
Confidence 999998854
No 178
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.21 E-value=3.9e-11 Score=118.55 Aligned_cols=77 Identities=13% Similarity=0.074 Sum_probs=69.1
Q ss_pred cEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccce-EEEEeCChHHHHHHHHhhcCCCceecC--cee
Q 001183 4 ATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGI-GRVQFTSLDFKSKAQNLSLNDKLVFNS--QNL 80 (1131)
Q Consensus 4 ~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgf-gfV~f~~~e~A~~Ai~~~~~~~~~~~g--r~L 80 (1131)
..||||||++.+|+++|.++|++| |+|.+|+|..+ +||| |||+|++.++|+.|++.+ ||..+.| +.|
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~y---G~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~L--nG~~i~g~~~~L 98 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKF---GTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSL--DGQNIYNACCTL 98 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTS---SCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHH--TTCEEETTEEEE
T ss_pred EEEEECCCCCCCCHHHHHHHHhCc---CCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHc--CCCeecCCCcEE
Confidence 368999999999999999999998 79999998863 4788 999999999999999999 4888877 999
Q ss_pred EeecCCCCCC
Q 001183 81 KISETHSDIV 90 (1131)
Q Consensus 81 ~V~~a~~~i~ 90 (1131)
+|.-|+.+-+
T Consensus 99 rI~~ak~~~l 108 (130)
T 3zzy_A 99 RIDFSKLTSL 108 (130)
T ss_dssp EEEECSCSSC
T ss_pred EEEecCCCce
Confidence 9999987654
No 179
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.20 E-value=4.8e-11 Score=117.04 Aligned_cols=75 Identities=20% Similarity=0.139 Sum_probs=66.7
Q ss_pred EEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccce-EEEEeCChHHHHHHHHhhcCCCceecC--ceeE
Q 001183 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGI-GRVQFTSLDFKSKAQNLSLNDKLVFNS--QNLK 81 (1131)
Q Consensus 5 ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgf-gfV~f~~~e~A~~Ai~~~~~~~~~~~g--r~L~ 81 (1131)
.|||||||+.+|+++|.++|++| |.|.+|+|.. + +|| |||||++.++|+.|++.++ |..+.| +.|+
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~y---G~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~Ln--G~~i~g~~~~l~ 95 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPV---GKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALN--GADIYAGCCTLK 95 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTT---SCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHT--TCCCBTTBSEEE
T ss_pred EEEEcCcCCCCCHHHHHHHHHhc---CCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhC--CCEecCCCeEEE
Confidence 47899999999999999999998 7999999965 3 287 9999999999999999994 888877 6999
Q ss_pred eecCCCCCC
Q 001183 82 ISETHSDIV 90 (1131)
Q Consensus 82 V~~a~~~i~ 90 (1131)
|+.|.+.-+
T Consensus 96 V~~Ak~~~l 104 (124)
T 2e5i_A 96 IEYARPTRL 104 (124)
T ss_dssp EECCSCSCC
T ss_pred EEEecCCcc
Confidence 999987653
No 180
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.19 E-value=3.4e-11 Score=122.40 Aligned_cols=76 Identities=16% Similarity=0.166 Sum_probs=69.3
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
.++|||+|||+++|+++|+++|+++ |.|..+ +.+|++||||||+|.+.++|.+|+..+ ||..++||.|+|
T Consensus 99 ~~~l~v~nlp~~~t~~~l~~~F~~~---g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~i~v 168 (175)
T 1fje_B 99 ARTLLAKNLSFNITEDELKEVFEDA---LEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEK--QGAEIDGRSVSL 168 (175)
T ss_dssp GGEEEEESCCSSCCHHHHHHHCTTC---SEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHH--TEEEETTEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHh--CCCEECCeEEEE
Confidence 4689999999999999999999997 687666 668999999999999999999999999 489999999999
Q ss_pred ecCCCC
Q 001183 83 SETHSD 88 (1131)
Q Consensus 83 ~~a~~~ 88 (1131)
+-|.+.
T Consensus 169 ~~a~~k 174 (175)
T 1fje_B 169 YYTGEK 174 (175)
T ss_dssp EECSSC
T ss_pred EecCCC
Confidence 998763
No 181
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.18 E-value=6.8e-11 Score=129.95 Aligned_cols=99 Identities=15% Similarity=0.159 Sum_probs=84.4
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
..+|||+|||+++|+++|+++|+.+ |.|.+++|+.++.+|++||||||+|.+.++|.+|+..++ |..++|+.|+|
T Consensus 95 ~~~l~v~nlp~~~t~~~l~~~f~~~---G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~--~~~~~g~~i~v 169 (284)
T 3smz_A 95 DALLCVANLPPSLTQQQFEELVRPF---GSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLL--GKPLGPRTLYV 169 (284)
T ss_dssp SCEEEEESCCTTCCHHHHHHHHGGG---SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT--TCEETTEECEE
T ss_pred CCEEEEcCCCCcCCHHHHHHHHHhc---CCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhC--CCEeCCcEEEE
Confidence 3589999999999999999999997 799999999999999999999999999999999999994 89999999999
Q ss_pred ecCCCCCCCCCCCCcceecCeEEEEeeee
Q 001183 83 SETHSDIVPRPVKAQHRVEDGVLHVGVMC 111 (1131)
Q Consensus 83 ~~a~~~i~~~~~~~~~~~~~~~~~~g~~~ 111 (1131)
..+.+...+ +-....-+|.+|.+-
T Consensus 170 ~~a~~~~~~-----~~~~~~~~l~v~nlp 193 (284)
T 3smz_A 170 HWTDAGQLT-----PALLHSRCLCVDRLP 193 (284)
T ss_dssp EECCGGGCC-----TTTTSCSEEEEECCC
T ss_pred EECCCCCCC-----cccCCccEEEEecCC
Confidence 998765432 112234556666653
No 182
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.17 E-value=1.4e-11 Score=125.17 Aligned_cols=95 Identities=14% Similarity=0.113 Sum_probs=77.3
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
..+|||||||+++|+++|+++|+++ |.|.. .++.+..+|++||||||+|.++++|++|++ + ||..++|+.|+|
T Consensus 13 ~~~l~V~nLp~~~t~~~l~~~f~~~---g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l--~g~~~~g~~l~v 85 (175)
T 1fje_B 13 PFNLFIGNLNPNKSVAELKVAISEL---FAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-L--TGLKVFGNEIKL 85 (175)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHH---HHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-G--GGEEETTEEEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHh---CCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-c--CCCEeCCeEEEE
Confidence 4689999999999999999999997 67776 456677799999999999999999999995 6 489999999999
Q ss_pred ecCCCCCCCCCCCCcceecCeEEEEeee
Q 001183 83 SETHSDIVPRPVKAQHRVEDGVLHVGVM 110 (1131)
Q Consensus 83 ~~a~~~i~~~~~~~~~~~~~~~~~~g~~ 110 (1131)
..+....-..+ -..-+|.+|.+
T Consensus 86 ~~~~~~~~~~~------~~~~~l~v~nl 107 (175)
T 1fje_B 86 EKPKGRDSKKV------RAARTLLAKNL 107 (175)
T ss_dssp ECCCCSSCSTT------GGGGEEEEESC
T ss_pred ecCCCcccccc------ccCCEEEEeCC
Confidence 99876432111 13346666664
No 183
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.15 E-value=5.5e-11 Score=115.81 Aligned_cols=76 Identities=13% Similarity=0.062 Sum_probs=68.9
Q ss_pred cccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeE
Q 001183 2 VLATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLK 81 (1131)
Q Consensus 2 m~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~ 81 (1131)
..++|||||+ .+|+++|+++|+.+ |.|.+|+|. ++||||||+|++.++|++|+..++ |..++|+.|+
T Consensus 38 ~~~~lfVgnl--~~te~~L~~~F~~~---G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~ln--g~~~~g~~l~ 104 (121)
T 2bz2_A 38 KGNTLYVYGE--DMTPTLLRGAFSPF---GNIIDLSMD------PPRNCAFVTYEKMESADQAVAELN--GTQVESVQLK 104 (121)
T ss_dssp CCCEEEEECS--SCCHHHHHHHHSTT---CCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHT--TCBCSSCBCE
T ss_pred CCCEEEEcCC--CCCHHHHHHHHHcc---CCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhC--CCEECCeEEE
Confidence 3578999995 69999999999998 799999995 689999999999999999999994 8899999999
Q ss_pred eecCCCCCC
Q 001183 82 ISETHSDIV 90 (1131)
Q Consensus 82 V~~a~~~i~ 90 (1131)
|+.|.+...
T Consensus 105 V~~a~~~~~ 113 (121)
T 2bz2_A 105 VNIARKQPM 113 (121)
T ss_dssp EEECCSSCC
T ss_pred EEEeCCCCC
Confidence 999988654
No 184
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.15 E-value=2.4e-11 Score=125.65 Aligned_cols=82 Identities=21% Similarity=0.316 Sum_probs=65.5
Q ss_pred cccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEE-----EeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceec
Q 001183 2 VLATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALE-----IITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFN 76 (1131)
Q Consensus 2 m~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~-----i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~ 76 (1131)
++++|||||||+++|+++|+++|+.+ |+|..+. .+.+..++++||||||+|.+.++|++|+ .+ ||..++
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~---g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l--~g~~~~ 76 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQ---MRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AF--DGIIFQ 76 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHH---HHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GG--TTEEET
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHH---HhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-Hh--cCCEEc
Confidence 57899999999999999999999997 4333321 1112223678999999999999999999 67 489999
Q ss_pred CceeEeecCCCCC
Q 001183 77 SQNLKISETHSDI 89 (1131)
Q Consensus 77 gr~L~V~~a~~~i 89 (1131)
|+.|+|..+....
T Consensus 77 g~~i~v~~~~~~~ 89 (198)
T 2yh0_A 77 GQSLKIRRPHDYQ 89 (198)
T ss_dssp TEEEEEECCCCCC
T ss_pred CceEEEeCCCCCC
Confidence 9999999887653
No 185
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.14 E-value=2.1e-11 Score=115.73 Aligned_cols=74 Identities=14% Similarity=0.043 Sum_probs=65.1
Q ss_pred EEeCCCCcCCHHHHHHHH------------hhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCce
Q 001183 7 WVSNIPQTAIAKDLLLFL------------ESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLV 74 (1131)
Q Consensus 7 ~Vgnl~~~~t~~~L~~~f------------e~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~ 74 (1131)
.++|+|+.+++++|++.| +++ |+|.+|+|..++ +|+|||||||+|+++++|++|+..+ ||..
T Consensus 19 ~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~---G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~l--ng~~ 92 (104)
T 1jmt_A 19 SADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKY---GEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDL--NNRW 92 (104)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---CCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHH--TTCE
T ss_pred ccCCcccccCHHHHHHHHHHHHHHHHHHhhccC---CceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHH--CCCE
Confidence 367888999998888777 887 799999999887 5899999999999999999999999 4999
Q ss_pred ecCceeEeecCC
Q 001183 75 FNSQNLKISETH 86 (1131)
Q Consensus 75 ~~gr~L~V~~a~ 86 (1131)
|+||.|+|.-++
T Consensus 93 ~~Gr~i~v~~sp 104 (104)
T 1jmt_A 93 FNGQPIHAELSP 104 (104)
T ss_dssp ETTEECCEEECC
T ss_pred ECCEEEEEEEcC
Confidence 999999998664
No 186
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.14 E-value=5.6e-11 Score=131.17 Aligned_cols=80 Identities=11% Similarity=0.092 Sum_probs=73.3
Q ss_pred ccEEEEeCCCCc-CCHHHHHHHHhhccCCceEEEEEEeecCC-CCCccceEEEEeCChHHHHHHHHhhcCCCceecCcee
Q 001183 3 LATVWVSNIPQT-AIAKDLLLFLESKLGKNSVFALEIITDRS-NWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNL 80 (1131)
Q Consensus 3 ~~ti~Vgnl~~~-~t~~~L~~~fe~~~G~G~V~~~~i~~dr~-tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L 80 (1131)
.++|||+|||++ +|+++|+++|+.+ |.|.+|+|..++. ||++||||||+|.+.++|.+|+ .+ ||..++|+.|
T Consensus 210 ~~~l~v~nlp~~~~t~~~l~~~F~~~---G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l--~g~~~~g~~i 283 (292)
T 2ghp_A 210 GREIMIRNLSTELLDENLLRESFEGF---GSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QM--NRSLLGNREI 283 (292)
T ss_dssp TTEEEEEEECTTTCCHHHHHHHHGGG---SCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GG--TTEEETTEEE
T ss_pred CceEEEECCCcccCCHHHHHHHHhcc---CCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-Hh--cCCEECCcEE
Confidence 468999999999 9999999999998 7999999999987 7999999999999999999999 88 4899999999
Q ss_pred EeecCCCC
Q 001183 81 KISETHSD 88 (1131)
Q Consensus 81 ~V~~a~~~ 88 (1131)
+|.-|.+.
T Consensus 284 ~V~~a~~k 291 (292)
T 2ghp_A 284 SVSLADKK 291 (292)
T ss_dssp EEEECCCC
T ss_pred EEEEecCC
Confidence 99998864
No 187
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.11 E-value=1.1e-10 Score=127.59 Aligned_cols=81 Identities=16% Similarity=0.086 Sum_probs=73.5
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceec---Cce
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFN---SQN 79 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~---gr~ 79 (1131)
..+|||+|||+.+|+++|+++|+.+ |.|.+|+|..| .+|++||||||+|.+.++|.+|+..++ ++..+. ||+
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~~~---G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~-~~~~~~~~~~r~ 170 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFSQF---GPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCG-DGAFLLTTTPRP 170 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGG---SCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHH-HSCEESSSSCCB
T ss_pred CCcccccCCCCCCCHHHHHHHHHhc---CCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhc-CCeEEecCCCce
Confidence 3689999999999999999999997 79999999999 599999999999999999999999996 366665 999
Q ss_pred eEeecCCCC
Q 001183 80 LKISETHSD 88 (1131)
Q Consensus 80 L~V~~a~~~ 88 (1131)
|.|..+...
T Consensus 171 i~v~~~~~~ 179 (261)
T 3sde_A 171 VIVEPMEQF 179 (261)
T ss_dssp CEEEECCCE
T ss_pred EEEeecccc
Confidence 999988754
No 188
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.11 E-value=1.2e-10 Score=127.74 Aligned_cols=79 Identities=15% Similarity=0.257 Sum_probs=71.9
Q ss_pred ccEEEEeCCCCcCCHHHHH----HHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCc
Q 001183 3 LATVWVSNIPQTAIAKDLL----LFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQ 78 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~----~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr 78 (1131)
.++|||||||+++|+++|+ ++|+.+ |.|.+|+|.. +|++||||||+|.+.++|++|++.+ ||..++|+
T Consensus 9 ~~~l~V~nlp~~~~~~~l~~~L~~~F~~~---G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~ 80 (282)
T 3pgw_A 9 NHTIYINNLNEKIKKDELKKSLYAIFSQF---GQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSM--QGFPFYDK 80 (282)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhcc---CCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHh--cCCeeCCc
Confidence 4689999999999999977 899997 7999999885 7899999999999999999999999 48999999
Q ss_pred eeEeecCCCCC
Q 001183 79 NLKISETHSDI 89 (1131)
Q Consensus 79 ~L~V~~a~~~i 89 (1131)
.|+|..+..+.
T Consensus 81 ~l~v~~a~~~~ 91 (282)
T 3pgw_A 81 PMRIQYAKTDS 91 (282)
T ss_pred EEEEEEeccCc
Confidence 99999886543
No 189
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.10 E-value=4.2e-11 Score=121.05 Aligned_cols=76 Identities=25% Similarity=0.440 Sum_probs=64.7
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCC--c-------eEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCc
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGK--N-------SVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKL 73 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~--G-------~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~ 73 (1131)
.++|||||||+++|+++|+++|+++ |. | .|.++++ +++||||||+|.++++|++|+ .+ ||.
T Consensus 4 ~~~l~V~nLp~~~t~~~l~~~F~~~-g~~~g~~~~~~~~v~~~~~------~~~~g~afV~f~~~~~A~~A~-~~--~~~ 73 (172)
T 2g4b_A 4 ARRLYVGNIPFGITEEAMMDFFNAQ-MRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AF--DGI 73 (172)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHH-HHHTTCCSSSSCSEEEEEE------ETTTTEEEEEESSHHHHHHHG-GG--TTC
T ss_pred ccEEEEcCCCcccCHHHHHHHHHHH-hhhcccccCCCCceeeeEe------cCCCCEEEEEeCCHHHHHHHH-Hh--CCc
Confidence 5799999999999999999999996 21 2 5666655 467899999999999999999 67 489
Q ss_pred eecCceeEeecCCCC
Q 001183 74 VFNSQNLKISETHSD 88 (1131)
Q Consensus 74 ~~~gr~L~V~~a~~~ 88 (1131)
.++|+.|+|..+...
T Consensus 74 ~~~g~~i~v~~~~~~ 88 (172)
T 2g4b_A 74 IFQGQSLKIRRPHDY 88 (172)
T ss_dssp EETTEECEEECCSSC
T ss_pred EecCceeeecCCccc
Confidence 999999999986654
No 190
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.09 E-value=2.2e-10 Score=122.67 Aligned_cols=78 Identities=14% Similarity=0.195 Sum_probs=71.7
Q ss_pred ccEEEEeCCCC-cCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeE
Q 001183 3 LATVWVSNIPQ-TAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLK 81 (1131)
Q Consensus 3 ~~ti~Vgnl~~-~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~ 81 (1131)
.++|||||||+ ++++++|+++|+.+ |.|.+|+|..++ ||||||+|.+.++|++|++.+ ||..++|+.|+
T Consensus 34 ~~~l~V~nLp~~~~te~~L~~~F~~~---G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l--~g~~~~g~~l~ 103 (229)
T 2adc_A 34 NSVLLVSNLNPERVTPQSLFILFGVY---GDVQRVKILFNK-----KENALVQMADGNQAQLAMSHL--NGHKLHGKPIR 103 (229)
T ss_dssp CSEEEEESCCTTTCCHHHHHHHHHHH---TCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHH--TTCBCSSSBCE
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhC---CCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHh--CCCeECCeEEE
Confidence 46899999999 99999999999998 799999999876 899999999999999999998 48999999999
Q ss_pred eecCCCCCC
Q 001183 82 ISETHSDIV 90 (1131)
Q Consensus 82 V~~a~~~i~ 90 (1131)
|..+.....
T Consensus 104 v~~a~~~~~ 112 (229)
T 2adc_A 104 ITLSKHQNV 112 (229)
T ss_dssp EECCSCCCC
T ss_pred EEEecCccc
Confidence 999876653
No 191
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.09 E-value=1.2e-10 Score=121.07 Aligned_cols=78 Identities=14% Similarity=0.195 Sum_probs=71.9
Q ss_pred ccEEEEeCCCC-cCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeE
Q 001183 3 LATVWVSNIPQ-TAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLK 81 (1131)
Q Consensus 3 ~~ti~Vgnl~~-~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~ 81 (1131)
+++|||||||+ ++++++|+++|+.+ |.|..|+|..++ ||||||+|.+.++|++|+..+ +|..++|+.|+
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~---G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l--~~~~~~g~~l~ 72 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVY---GDVQRVKILFNK-----KENALVQMADGNQAQLAMSHL--NGHKLHGKPIR 72 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTT---CCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHH--TTCCCSSCCCE
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhc---CCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHh--CCCeecCeEEE
Confidence 57999999999 99999999999997 799999999876 899999999999999999998 48999999999
Q ss_pred eecCCCCCC
Q 001183 82 ISETHSDIV 90 (1131)
Q Consensus 82 V~~a~~~i~ 90 (1131)
|..+..+..
T Consensus 73 v~~a~~~~~ 81 (198)
T 1qm9_A 73 ITLSKHQNV 81 (198)
T ss_dssp EEECCCCSC
T ss_pred EEEecCCCc
Confidence 999887653
No 192
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.09 E-value=1.1e-10 Score=128.16 Aligned_cols=82 Identities=15% Similarity=0.191 Sum_probs=76.1
Q ss_pred ccEEEEeCCCCcC-CHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeE
Q 001183 3 LATVWVSNIPQTA-IAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLK 81 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~-t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~ 81 (1131)
.++|||+|||+++ |+++|+++|+.+ |.|.+|+|..++ +|+++|||||+|++.++|.+|+..+ ||..++|+.|+
T Consensus 184 ~~~l~v~nlp~~~~~~~~l~~~f~~~---G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~ 257 (284)
T 3smz_A 184 SRCLCVDRLPPGFNDVDALCRALSAV---HSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQA--DGLSLGGSHLR 257 (284)
T ss_dssp CSEEEEECCCTTCCCHHHHHHHTCSS---SCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHH--TTCEETTEECE
T ss_pred ccEEEEecCCcccCCHHHHHHHhhCC---CCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHh--CCCccCCeEEE
Confidence 4689999999995 999999999998 799999999998 8999999999999999999999999 48999999999
Q ss_pred eecCCCCCC
Q 001183 82 ISETHSDIV 90 (1131)
Q Consensus 82 V~~a~~~i~ 90 (1131)
|+-|.+..-
T Consensus 258 v~~a~~~~~ 266 (284)
T 3smz_A 258 VSFCAPGPP 266 (284)
T ss_dssp EEECCSSSC
T ss_pred EEEecCCCc
Confidence 999987654
No 193
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.09 E-value=1.5e-10 Score=125.66 Aligned_cols=77 Identities=14% Similarity=0.157 Sum_probs=68.0
Q ss_pred ccEEEEeCCCCcC---------CHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCc
Q 001183 3 LATVWVSNIPQTA---------IAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKL 73 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~---------t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~ 73 (1131)
.+||||||||..+ ++++|+++|+++ |.|.+|+|+. +||||||+|.+.++|+.|+++|+ |.
T Consensus 134 ~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~f---G~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~--g~ 202 (240)
T 3u1l_A 134 NKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRL---GDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMS--NQ 202 (240)
T ss_dssp CCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTT---SCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHT--TC
T ss_pred CceeecCCCChhhhcccccccCcHHHHHHHHHcc---CCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhC--CC
Confidence 4699999999998 799999999998 7999999984 68999999999999999999995 77
Q ss_pred ee------------cCceeEeecCCCCCC
Q 001183 74 VF------------NSQNLKISETHSDIV 90 (1131)
Q Consensus 74 ~~------------~gr~L~V~~a~~~i~ 90 (1131)
.+ +|+.|+|+-|..++-
T Consensus 203 ~l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 203 TLLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred EEeccccccccccCCCCEEEEEEccCCCC
Confidence 77 899999999998764
No 194
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.04 E-value=1.9e-10 Score=121.89 Aligned_cols=70 Identities=7% Similarity=0.106 Sum_probs=63.6
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceE--EEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCce
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSV--FALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQN 79 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V--~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~ 79 (1131)
+++|||+|||+++|+++|+++|+++ |.| .+++|..++ |+++|||||+|++.++|.+|+..+| |..++|+.
T Consensus 123 ~~~l~v~NLp~~~t~~~L~~~F~~~---G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~ln--g~~~~g~~ 194 (205)
T 3tyt_A 123 SNVLHFFNAPLEVTEENFFEICDEL---GVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLN--HYQMKNPN 194 (205)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHHHH---TCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHT--TCEECCSS
T ss_pred cceEEEeCCCCCCCHHHHHHHHHhc---CCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhC--CCCccCCC
Confidence 3589999999999999999999997 788 899999887 6677999999999999999999994 88988883
No 195
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.04 E-value=4.1e-10 Score=124.20 Aligned_cols=101 Identities=15% Similarity=0.168 Sum_probs=76.0
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCc-eEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeE
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKN-SVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLK 81 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G-~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~ 81 (1131)
..+|||||||+.+++++|+++|+.+ | .|.+|+|..++. |++||||||+|.+.++|.+|+..++ |..++|+.|+
T Consensus 117 ~~~l~v~nlp~~~t~~~l~~~f~~~---G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~--g~~~~g~~l~ 190 (292)
T 2ghp_A 117 ECTLWMTNFPPSYTQRNIRDLLQDI---NVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLN--GLKIEGYTLV 190 (292)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHHT---TCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHT--TCEETTEECE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHh---CCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhC--CCEeCCcEEE
Confidence 3689999999999999999999998 8 999999999985 8899999999999999999999994 8999999999
Q ss_pred eecCCCCCC-CCCCCCcceecCeEEEEeeee
Q 001183 82 ISETHSDIV-PRPVKAQHRVEDGVLHVGVMC 111 (1131)
Q Consensus 82 V~~a~~~i~-~~~~~~~~~~~~~~~~~g~~~ 111 (1131)
|..+.+..- .|. ..-....-+|.+|.+-
T Consensus 191 v~~a~~~~~~~~~--~~~~~~~~~l~v~nlp 219 (292)
T 2ghp_A 191 TKVSNPLEKSKRT--DSATLEGREIMIRNLS 219 (292)
T ss_dssp EEECCCC-----------CCTTTEEEEEEEC
T ss_pred EEECCCCcccccc--cccCCCCceEEEECCC
Confidence 999876543 121 1122344567777653
No 196
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.03 E-value=4.2e-10 Score=122.98 Aligned_cols=74 Identities=20% Similarity=0.297 Sum_probs=67.8
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEe
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKI 82 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V 82 (1131)
..+|||||||+++|+++|+++|+.+ |.|..|+|. ++||||||+|.+.++|..|+..+ ||..++|+.|+|
T Consensus 22 ~~~l~V~nLp~~~te~~l~~~F~~~---G~i~~v~i~------~~kg~afV~f~~~~~A~~A~~~l--~g~~i~g~~l~v 90 (261)
T 3sde_A 22 RCRLFVGNLPTDITEEDFKRLFERY---GEPSEVFIN------RDRGFGFIRLESRTLAEIAKAEL--DGTILKSRPLRI 90 (261)
T ss_dssp GGEEEEESCCTTCCHHHHHHHTGGG---CCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHH--TTCEETTEECEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhc---CCEEEEEEe------CCCcEEEEEECCHHHHHHHHHHc--CCcEECCceeEe
Confidence 3589999999999999999999997 799999995 46899999999999999999998 489999999999
Q ss_pred ecCCC
Q 001183 83 SETHS 87 (1131)
Q Consensus 83 ~~a~~ 87 (1131)
..+.+
T Consensus 91 ~~a~~ 95 (261)
T 3sde_A 91 RFATH 95 (261)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 98764
No 197
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.02 E-value=5.6e-10 Score=106.16 Aligned_cols=83 Identities=19% Similarity=0.065 Sum_probs=70.8
Q ss_pred cccEEEEeCC--CCcC--------CHHHHHHHHhhccCCceEEEEEEeecCCC--CCccceEEEEeCChHHHHHHHHhhc
Q 001183 2 VLATVWVSNI--PQTA--------IAKDLLLFLESKLGKNSVFALEIITDRSN--WKSRGIGRVQFTSLDFKSKAQNLSL 69 (1131)
Q Consensus 2 m~~ti~Vgnl--~~~~--------t~~~L~~~fe~~~G~G~V~~~~i~~dr~t--g~sRgfgfV~f~~~e~A~~Ai~~~~ 69 (1131)
.++.|.+.|+ |... ..+||++.|++| |+|.+|+|..++.+ +++||||||+|+++++|++|+..+
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~---G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~l- 79 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKY---GLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGL- 79 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTT---SCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHH-
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHcc---CCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHh-
Confidence 3567888887 3333 347999999998 79999999999876 478999999999999999999999
Q ss_pred CCCceecCceeEeecCCCCC
Q 001183 70 NDKLVFNSQNLKISETHSDI 89 (1131)
Q Consensus 70 ~~~~~~~gr~L~V~~a~~~i 89 (1131)
||..|+||.|+|.-++.+.
T Consensus 80 -nG~~f~GR~i~v~~~~~~~ 98 (105)
T 3v4m_A 80 -TGRKFANRVVVTKYCDPDS 98 (105)
T ss_dssp -TTCEETTEECEEEEECHHH
T ss_pred -CCCEeCCCEEEEEEeCHHH
Confidence 5999999999999876543
No 198
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.01 E-value=4.6e-10 Score=109.10 Aligned_cols=81 Identities=10% Similarity=0.009 Sum_probs=70.8
Q ss_pred ccEEEEeCCCC-----cCCHHHHHHHHhhccCCceEEEEEEeecCC----CCCccceEEEEeCChHHHHHHHHhhcCCCc
Q 001183 3 LATVWVSNIPQ-----TAIAKDLLLFLESKLGKNSVFALEIITDRS----NWKSRGIGRVQFTSLDFKSKAQNLSLNDKL 73 (1131)
Q Consensus 3 ~~ti~Vgnl~~-----~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~----tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~ 73 (1131)
+++|.+.|+-. .-.++||++.|+.| |+|.+|+|..++. ++++||||||+|+++++|.+|+..+ ||.
T Consensus 20 s~vl~L~Nm~~~~el~ddleedl~eef~k~---G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~L--nGr 94 (118)
T 3ue2_A 20 STVMVLRNMVDPKDIDDDLEGEVTEECGKF---GAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQAL--NGR 94 (118)
T ss_dssp CCEEEEESCSCGGGCCTTHHHHHHHHHTTT---SCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHH--TTC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHhcc---CCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHH--CCC
Confidence 67899999842 23479999999998 7999999999976 5788999999999999999999999 599
Q ss_pred eecCceeEeecCCCC
Q 001183 74 VFNSQNLKISETHSD 88 (1131)
Q Consensus 74 ~~~gr~L~V~~a~~~ 88 (1131)
.|+||.|+|+-++.+
T Consensus 95 ~f~GR~i~v~~~~~~ 109 (118)
T 3ue2_A 95 WFAGRKVVAEVYDQE 109 (118)
T ss_dssp EETTEECEEEEECHH
T ss_pred EECCcEEEEEEcChH
Confidence 999999999977653
No 199
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.97 E-value=6.2e-10 Score=115.61 Aligned_cols=77 Identities=23% Similarity=0.294 Sum_probs=70.0
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCc-eEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceec-Ccee
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKN-SVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFN-SQNL 80 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G-~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~-gr~L 80 (1131)
.++|+|+|||..+++++|+++|+.+ | .|..++|..+ +||||||+|.+.++|.+|+..++ |..++ |+.|
T Consensus 120 ~~~l~v~nl~~~~~~~~l~~~f~~~---G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~--g~~~~~g~~l 189 (198)
T 1qm9_A 120 SATLHLSNIPPSVSEEDLKVLFSSN---GGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLH--NHDLGENHHL 189 (198)
T ss_dssp CCEEEECCCCTTCCHHHHHHHHHHT---TSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHT--SSCCSSCCSC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHc---CCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhc--CCccCCCCeE
Confidence 4689999999999999999999998 8 9999999753 38999999999999999999994 88889 9999
Q ss_pred EeecCCCCC
Q 001183 81 KISETHSDI 89 (1131)
Q Consensus 81 ~V~~a~~~i 89 (1131)
+|+-|.+.|
T Consensus 190 ~v~~a~~~i 198 (198)
T 1qm9_A 190 RVSFSKSTI 198 (198)
T ss_dssp CEEEECCCC
T ss_pred EEEeecccC
Confidence 999987754
No 200
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=98.97 E-value=1.1e-09 Score=120.26 Aligned_cols=74 Identities=15% Similarity=0.216 Sum_probs=68.0
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceec-CceeE
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFN-SQNLK 81 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~-gr~L~ 81 (1131)
.++|||+|||..+|+++|+++|+.+ |.|.+|+|..++ +|||||+|.+.++|.+|+..++ |..++ |+.|+
T Consensus 207 ~~~l~v~nl~~~~~~~~l~~~F~~~---G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~--g~~~~~g~~l~ 276 (282)
T 3pgw_A 207 NHILFLTNLPEETNELMLSMLFNQF---PGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQ--GFKITQNNAMK 276 (282)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHhc---CCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcC--CcEeCCCCEEE
Confidence 3679999999999999999999998 799999999655 6999999999999999999994 89998 99999
Q ss_pred eecCC
Q 001183 82 ISETH 86 (1131)
Q Consensus 82 V~~a~ 86 (1131)
|+-|+
T Consensus 277 v~~ak 281 (282)
T 3pgw_A 277 ISFAK 281 (282)
T ss_pred EEEec
Confidence 98775
No 201
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.96 E-value=1.2e-09 Score=116.94 Aligned_cols=77 Identities=25% Similarity=0.305 Sum_probs=70.2
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhccCCc-eEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceec-Ccee
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKLGKN-SVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFN-SQNL 80 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~G~G-~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~-gr~L 80 (1131)
.++|||+|||..+++++|+++|+.+ | +|..++|+. ++||||||+|++.++|.+|+..++ |..++ |+.|
T Consensus 151 ~~~l~V~nlp~~~t~~~l~~~f~~~---G~~i~~v~i~~-----~~~g~afV~f~~~~~A~~Ai~~l~--g~~~~~g~~l 220 (229)
T 2adc_A 151 SATLHLSNIPPSVSEEDLKVLFSSN---GGVVKGFKFFQ-----KDRKMALIQMGSVEEAVQALIDLH--NHDLGENHHL 220 (229)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTT---SCCEEEEEECS-----SSTTCEEEEESSHHHHHHHHHHHT--TCBSSSSCBC
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHc---CCCeeEEEEEE-----CCCcEEEEEECCHHHHHHHHHHHC--CCccCCCCeE
Confidence 4689999999999999999999998 8 999999975 258999999999999999999994 88899 9999
Q ss_pred EeecCCCCC
Q 001183 81 KISETHSDI 89 (1131)
Q Consensus 81 ~V~~a~~~i 89 (1131)
+|+-|.+.|
T Consensus 221 ~v~~a~~~i 229 (229)
T 2adc_A 221 RVSFSKSTI 229 (229)
T ss_dssp EEEECSSCC
T ss_pred EEEEecCCC
Confidence 999988754
No 202
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.96 E-value=1.3e-09 Score=104.14 Aligned_cols=77 Identities=16% Similarity=0.144 Sum_probs=66.8
Q ss_pred ccEEEEeCCCCcCC-----------HHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCC
Q 001183 3 LATVWVSNIPQTAI-----------AKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLND 71 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t-----------~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~ 71 (1131)
+++|+|.|+..... +++|+++|+++ |+|.+|.| .|+ .+||||||+|.+.++|++|+..+ |
T Consensus 15 s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~---G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~l--n 85 (112)
T 2dit_A 15 ERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKF---GQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTL--D 85 (112)
T ss_dssp CCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGT---SCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHS--T
T ss_pred ceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHcc---CCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHc--C
Confidence 57899999954432 68999999998 79999965 665 38999999999999999999999 4
Q ss_pred CceecCceeEeecCCCC
Q 001183 72 KLVFNSQNLKISETHSD 88 (1131)
Q Consensus 72 ~~~~~gr~L~V~~a~~~ 88 (1131)
|..++||.|+|..|.+.
T Consensus 86 g~~~~gr~l~v~~a~~~ 102 (112)
T 2dit_A 86 GRWFGGRQITAQAWDGT 102 (112)
T ss_dssp TCEETTEECEEEECCSC
T ss_pred CCEECCcEEEEEEeCCC
Confidence 89999999999998764
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.89 E-value=1.9e-09 Score=122.69 Aligned_cols=74 Identities=16% Similarity=0.074 Sum_probs=62.5
Q ss_pred ccEEEEeC--CCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCcee---cC
Q 001183 3 LATVWVSN--IPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVF---NS 77 (1131)
Q Consensus 3 ~~ti~Vgn--l~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~---~g 77 (1131)
+++||||| |++.+|+++|+++|++| |+|.+|.+.. +||||||+|++.++|++||+.+| |.++ .|
T Consensus 18 s~~l~VgN~gl~~~~te~~L~~~F~~~---G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~ln--G~~~~~~~g 86 (345)
T 3tht_A 18 TQSLVVANGGLGNGVSRNQLLPVLEKC---GLVDALLMPP------NKPYSFARYRTTEESKRAYVTLN--GKEVVDDLG 86 (345)
T ss_dssp CSEEEEETCSGGGTCCHHHHHHHHHTT---SCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTT--TCEEECTTS
T ss_pred CCEEEEEcCCCCCCCCHHHHHHHHHhc---CCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhC--CCccccccC
Confidence 57999999 68999999999999998 7999877642 68999999999999999999995 7665 35
Q ss_pred c--eeEeecCCC
Q 001183 78 Q--NLKISETHS 87 (1131)
Q Consensus 78 r--~L~V~~a~~ 87 (1131)
+ .|.|+-++.
T Consensus 87 ~~~~ly~~~~~~ 98 (345)
T 3tht_A 87 QKITLYLNFVEK 98 (345)
T ss_dssp CEEECEEEECSS
T ss_pred CceEEEEEEeec
Confidence 5 677777653
No 204
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.80 E-value=1.1e-08 Score=96.60 Aligned_cols=65 Identities=22% Similarity=0.173 Sum_probs=57.7
Q ss_pred CcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEeecCCCCC
Q 001183 13 QTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKISETHSDI 89 (1131)
Q Consensus 13 ~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V~~a~~~i 89 (1131)
..+++++|+++|++| |.|..|+|. +++||||||+|++.++|+.|+..++ + +.|++|+|+-|.+..
T Consensus 27 ~~~te~~L~~~F~~~---G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~--~--~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKY---GEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEV--G--LVDNPLKISWLEGQP 91 (100)
T ss_dssp CSCCHHHHHHHHHTT---SCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCC--B--CSSSBCEEECSSCCC
T ss_pred CCCCHHHHHHHHHhc---CCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcC--C--CCCCeEEEEEccCCC
Confidence 457999999999998 799999998 5899999999999999999999852 3 679999999988765
No 205
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.60 E-value=3.8e-08 Score=95.06 Aligned_cols=78 Identities=14% Similarity=0.083 Sum_probs=63.3
Q ss_pred ccEEEEeCCCCcC----------CHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCC
Q 001183 3 LATVWVSNIPQTA----------IAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDK 72 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~----------t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~ 72 (1131)
++.|.+.|+=... ..+||++.|++| |+|.+|.|..+. +||||||+|++.++|++|+..+ ||
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kf---G~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~l--nG 77 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKH---GGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNAL--HG 77 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTT---TCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHH--TT
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhcc---CCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHh--CC
Confidence 4557777763322 346889999997 799999885443 6999999999999999999999 59
Q ss_pred ceecCceeEeecCCCCC
Q 001183 73 LVFNSQNLKISETHSDI 89 (1131)
Q Consensus 73 ~~~~gr~L~V~~a~~~i 89 (1131)
.+|+||.|+|+-++.+-
T Consensus 78 ~~f~GR~i~v~~~~~~~ 94 (114)
T 3s6e_A 78 RWFAGKMITAAYVPLPT 94 (114)
T ss_dssp CEETTEECEEEEECHHH
T ss_pred CEECCEEEEEEEEcHHH
Confidence 99999999999886554
No 206
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.53 E-value=1.2e-07 Score=100.99 Aligned_cols=70 Identities=10% Similarity=-0.039 Sum_probs=62.1
Q ss_pred CCHHHHHHHHhhccCCceEEEEEEe----ecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEeecCCCCC
Q 001183 15 AIAKDLLLFLESKLGKNSVFALEII----TDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKISETHSDI 89 (1131)
Q Consensus 15 ~t~~~L~~~fe~~~G~G~V~~~~i~----~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V~~a~~~i 89 (1131)
-.+++|.+.|++| |+|.+++|. +++++|++||||||+|.+.++|++|+..+ ||.+|+||.|+|+-++.+-
T Consensus 141 e~~~dl~~e~~~~---G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l--~gr~~~gr~i~~~~~~~~~ 214 (222)
T 3dxb_A 141 DLEGEVTEECGKF---GAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQAL--NGRWFAGRKVVAEVYDQER 214 (222)
T ss_dssp THHHHHHHHHTTT---SCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHH--TTCBSSSSBCEEEECCHHH
T ss_pred HHHHHHHHHHHcc---CCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHh--cCceECCeEEEEEEcCHHH
Confidence 3568899999997 799999999 45667799999999999999999999999 4999999999999877543
No 207
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.47 E-value=2e-07 Score=90.81 Aligned_cols=74 Identities=9% Similarity=0.100 Sum_probs=66.4
Q ss_pred ccEEEEeCCCCc-CCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCC-hHHHHHHHHhhcCCCceecCcee
Q 001183 3 LATVWVSNIPQT-AIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTS-LDFKSKAQNLSLNDKLVFNSQNL 80 (1131)
Q Consensus 3 ~~ti~Vgnl~~~-~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~-~e~A~~Ai~~~~~~~~~~~gr~L 80 (1131)
+.-|||||+++. ++.++|+++|+++ |+|..|.+..++.| |||.|.+ +++|+.|+..++.+++.+.|..+
T Consensus 18 G~il~v~~l~~~~~sredLke~F~~~---G~V~~Vd~~~g~~t------gfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 18 GCLLKFSGDLDDQTCREDLHILFSNH---GEIKWIDFVRGAKE------GIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHTCSS---CCEEEEECCTTCSE------EEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred CeEEEEecCCCCcCCHHHHHHHHHhc---CCEEEEEEecCCCE------EEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 456999999999 9999999999997 79999999987754 9999999 78999999999888999999998
Q ss_pred EeecC
Q 001183 81 KISET 85 (1131)
Q Consensus 81 ~V~~a 85 (1131)
++...
T Consensus 89 ~~evL 93 (121)
T 1owx_A 89 TWEVL 93 (121)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 88643
No 208
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.46 E-value=3.1e-07 Score=84.79 Aligned_cols=73 Identities=16% Similarity=0.112 Sum_probs=62.1
Q ss_pred cEEEEeCCCC----cCCH----HHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCcee
Q 001183 4 ATVWVSNIPQ----TAIA----KDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVF 75 (1131)
Q Consensus 4 ~ti~Vgnl~~----~~t~----~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~ 75 (1131)
.||.|.-.|. +.-. .+|.+.|++| |+|..+|++.|+ |||+|.+.++|.+||+ + ||..+
T Consensus 8 ~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~---G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-m--nG~~v 73 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFDDALIDELLQQFASF---GEVILIRFVEDK--------MWVTFLEGSSALNVLS-L--NGKEL 73 (91)
T ss_dssp CEEEEEEECSSTTTCSCCHHHHHHHHHHHHTT---CCEEEEEECSSS--------EEEEESSHHHHHHGGG-G--TTCEE
T ss_pred CeEEEEeccCccccccCCHHHHHHHHHHHHhC---CCeEEEEEecCC--------EEEEECChHHHHHHHh-c--CCeEe
Confidence 4777777662 3333 6899999997 799999999977 8999999999999999 7 59999
Q ss_pred cCceeEeecCCCCCC
Q 001183 76 NSQNLKISETHSDIV 90 (1131)
Q Consensus 76 ~gr~L~V~~a~~~i~ 90 (1131)
+||.|+|+.+.++-+
T Consensus 74 ~Gr~LkV~lkt~dW~ 88 (91)
T 2dnr_A 74 LNRTITIALKSPSGP 88 (91)
T ss_dssp TTEEEEEEECCCSSC
T ss_pred CCeEEEEEeCCCCcc
Confidence 999999999988764
No 209
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.14 E-value=2e-06 Score=79.89 Aligned_cols=69 Identities=22% Similarity=0.211 Sum_probs=58.8
Q ss_pred cEEEEeCCCCc-----CCH----HHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCce
Q 001183 4 ATVWVSNIPQT-----AIA----KDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLV 74 (1131)
Q Consensus 4 ~ti~Vgnl~~~-----~t~----~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~ 74 (1131)
.||.|.-++.+ .-. .+|.+.|+++ |+|..+|+++|+ +||+|.+.++|.+||+ + ||..
T Consensus 16 ~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~---G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-l--dG~~ 81 (95)
T 1ufw_A 16 ATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSY---GTIVLVRINQGQ--------MLVTFADSHSALSVLD-V--DGMK 81 (95)
T ss_dssp CEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHH---SCCSEEEEETTE--------EEEECSCSHHHHHHHH-G--GGSE
T ss_pred CeEEEEecCCcccccccCCHHHHHHHHHHHHHC---CCEEEEEEecCc--------EEEEEcChHHHHHHHh-c--CCee
Confidence 48888877643 222 5799999997 799999999988 9999999999999999 7 4999
Q ss_pred ecCceeEeecCC
Q 001183 75 FNSQNLKISETH 86 (1131)
Q Consensus 75 ~~gr~L~V~~a~ 86 (1131)
++||.|+|+.-.
T Consensus 82 v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 82 VKGRAVKISGPS 93 (95)
T ss_dssp ETTEEEEEECCC
T ss_pred eCCeEEEEeccC
Confidence 999999999743
No 210
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.06 E-value=0.0022 Score=60.32 Aligned_cols=75 Identities=15% Similarity=0.179 Sum_probs=64.0
Q ss_pred cccEEEEeCCCCcCCHHHHHHHHhhc--cCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCce
Q 001183 2 VLATVWVSNIPQTAIAKDLLLFLESK--LGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQN 79 (1131)
Q Consensus 2 m~~ti~Vgnl~~~~t~~~L~~~fe~~--~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~ 79 (1131)
..++|.|.|+|..+.++-|.-|||+. -|-|.|.+++... +-|+|+|.+.+.|++.+..- ...+.|..
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~---~H~L~~~~ 75 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQA---DHELHGAQ 75 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCS---CCBSSSSB
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCC---cceecCeE
Confidence 35799999999999999999999994 3669999998853 66899999999998888765 58899999
Q ss_pred eEeecCCC
Q 001183 80 LKISETHS 87 (1131)
Q Consensus 80 L~V~~a~~ 87 (1131)
|.|.+..+
T Consensus 76 LsV~P~~~ 83 (104)
T 2dhx_A 76 LSLRPAPP 83 (104)
T ss_dssp CEEEECCC
T ss_pred EEEEcCCC
Confidence 99987443
No 211
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=96.98 E-value=0.0018 Score=61.46 Aligned_cols=74 Identities=9% Similarity=0.184 Sum_probs=65.3
Q ss_pred ccEEEEeCCCCcCCHHHHHHHHhhcc--CCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCcee
Q 001183 3 LATVWVSNIPQTAIAKDLLLFLESKL--GKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNL 80 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~t~~~L~~~fe~~~--G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L 80 (1131)
.++|-+-|+|-+++.+.++.|++.+. -.|.+..+-+..|+ |=|+|+|++.+.|.+|.-++ +|.+|+||.|
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL--~G~ef~gr~L 92 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMIL--NGSQFQGKVI 92 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHH--SSEEETTEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhc--CCeeecCeEE
Confidence 35899999999999999999999962 34588999999888 55899999999999999999 5999999999
Q ss_pred Eeec
Q 001183 81 KISE 84 (1131)
Q Consensus 81 ~V~~ 84 (1131)
++..
T Consensus 93 r~gT 96 (117)
T 2l9w_A 93 RSGT 96 (117)
T ss_dssp EEEC
T ss_pred EecC
Confidence 9864
No 212
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=94.52 E-value=0.051 Score=53.98 Aligned_cols=33 Identities=9% Similarity=0.006 Sum_probs=28.3
Q ss_pred EEEEeecCCCCCccceEEEEeCChHHHHHHHHhhc
Q 001183 35 ALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSL 69 (1131)
Q Consensus 35 ~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~ 69 (1131)
.++|+.+. .+++|||||+|.++++|++|+..++
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~ 34 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYA 34 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHH
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhc
Confidence 46777776 4799999999999999999998875
No 213
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=90.44 E-value=0.24 Score=48.80 Aligned_cols=64 Identities=8% Similarity=0.008 Sum_probs=45.9
Q ss_pred CCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEeecCCCCCC--------CCCCCCcceecCeEEEEeee
Q 001183 45 WKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKISETHSDIV--------PRPVKAQHRVEDGVLHVGVM 110 (1131)
Q Consensus 45 g~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V~~a~~~i~--------~~~~~~~~~~~~~~~~~g~~ 110 (1131)
...+|+++|+|.+.++|++|+..+. ||..++| .+++..+..... .......-....-+|.||.+
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~-ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl 81 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYA-NDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNL 81 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHH-HHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESC
T ss_pred ccccccceeeecCHHHHHHHHHHHh-cCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCC
Confidence 4678999999999999999999982 2789999 999998876321 01111222334567788775
No 214
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=82.37 E-value=4.5 Score=39.09 Aligned_cols=68 Identities=18% Similarity=0.193 Sum_probs=53.4
Q ss_pred cEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecC-ceeEe
Q 001183 4 ATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNS-QNLKI 82 (1131)
Q Consensus 4 ~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~g-r~L~V 82 (1131)
.-|-|.|||... ...+.+.|+++ |+|.+... + ....+--|+|.++.+|++|+.. ||..++| -.+-|
T Consensus 25 ~wVtVFGFp~~~-~~~VL~~F~~~---G~Iv~~~~--~----~~~NWihI~Y~s~~~A~rAL~k---NG~ii~g~~mIGV 91 (119)
T 1wwh_A 25 TWVTVFGFPQAS-ASYILLQFAQY---GNILKHVM--S----NTGNWMHIRYQSKLQARKALSK---DGRIFGESIMIGV 91 (119)
T ss_dssp GEEEEECCCGGG-HHHHHHHHHTT---SCEEEEEE--C----SSSSEEEEEESSHHHHHHHHTT---TTCEETTTEECEE
T ss_pred CEEEEECCCHHH-HHHHHHHHHhh---CcEEEecc--C----CCCCeEEEEeCCHHHHHHHHHh---CCeEecCCEEEEE
Confidence 458899999995 78889999997 69988775 1 1237889999999999999877 4888875 45556
Q ss_pred ec
Q 001183 83 SE 84 (1131)
Q Consensus 83 ~~ 84 (1131)
.+
T Consensus 92 ~p 93 (119)
T 1wwh_A 92 KP 93 (119)
T ss_dssp EE
T ss_pred EE
Confidence 55
No 215
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=82.34 E-value=5.5 Score=37.57 Aligned_cols=76 Identities=9% Similarity=-0.004 Sum_probs=56.4
Q ss_pred ccEEEEeCCCCcC-CHH----HHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecC
Q 001183 3 LATVWVSNIPQTA-IAK----DLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNS 77 (1131)
Q Consensus 3 ~~ti~Vgnl~~~~-t~~----~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~g 77 (1131)
.+||.|.|++..+ ..+ .++++|.++ + ...+-.... |=.=..|.|.++++|.+|-..+. +..|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~-~--~~~tF~~lk------SFRRirv~F~~~~~A~~AR~~Lh--~~~f~g 73 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTY-D--KDTTFQYFK------SFKRVRINFSNPLSAADARLRLH--KTEFLG 73 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTT-C--SSCEEEEET------TTTEEEEECSSTTHHHHHHHTST--TSEETT
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhh-C--cCcceeecC------cceEEEEEeCChHHHHHHHHHhc--cceecC
Confidence 4689999999876 444 557788886 2 333333332 22245899999999999999994 899999
Q ss_pred ceeEeecCCCCC
Q 001183 78 QNLKISETHSDI 89 (1131)
Q Consensus 78 r~L~V~~a~~~i 89 (1131)
+.++|--|.+..
T Consensus 74 ~~~r~YFgq~~~ 85 (104)
T 1wey_A 74 KEMKLYFAQTLH 85 (104)
T ss_dssp EECEEECCCCSS
T ss_pred ceeEEEecCCCC
Confidence 999999988554
No 216
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=80.96 E-value=0.7 Score=54.48 Aligned_cols=55 Identities=16% Similarity=0.094 Sum_probs=40.7
Q ss_pred cEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHh
Q 001183 4 ATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNL 67 (1131)
Q Consensus 4 ~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~ 67 (1131)
.+|+|. +|..+++++|.+||++| |.|.++-.-.++ | -||.|||.+.+++.++++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~---g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQF---GPINNHFFYESF--G---LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGG---SCCCCEEEECSS--S---EEEEEECC---CCHHHHSS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhc---CCcceEEEEccC--C---eEEEEEeCCHHHHHHHHhc
Confidence 579997 79999999999999998 899988766544 4 7999999999888866554
No 217
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=76.61 E-value=2.4 Score=39.62 Aligned_cols=52 Identities=19% Similarity=0.241 Sum_probs=42.7
Q ss_pred EEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhc
Q 001183 6 VWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSL 69 (1131)
Q Consensus 6 i~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~ 69 (1131)
++| +||....-.||.++|+.+ | .+.|. |-.=..|||-|.+++.|..|+..++
T Consensus 9 ~~l-~FP~ewKt~Di~~lFs~f---g---gv~I~-----WidDTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 9 LHV-TFPKEWKTSDLYQLFSAF---G---NIQIS-----WIDDTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEE-ECCTTCCHHHHHHHTTTS---E---EEEEE-----EEETTEEEEEEEEECHHHHHHHHHT
T ss_pred EEE-eCChhhhhHHHHHHHhcc---C---CEEEE-----EEcCCeEEEEecCHHHHHHHHHhcc
Confidence 445 999999999999999998 4 23332 4556799999999999999999774
No 218
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=73.44 E-value=2.6 Score=39.31 Aligned_cols=52 Identities=23% Similarity=0.327 Sum_probs=41.8
Q ss_pred EEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhc
Q 001183 6 VWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSL 69 (1131)
Q Consensus 6 i~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~ 69 (1131)
+++ +||....-.||.++|+.+ | | | .| .|-.-..|||-|.+++.|..|+..++
T Consensus 19 f~l-~FP~ewKt~DI~~lFs~f-g-g-v---~I-----~WidDTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 19 LHV-TFPKEWKTSDLYQLFSAF-G-N-I---QI-----SWIDDTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp EEE-ECCTTCCHHHHHHHHTTT-C-S-C---CC-----EEEETTEEEEECSCHHHHHHHHHHHH
T ss_pred EEE-eCChhhhhHHHHHHhhcc-C-C-E---EE-----EEEcCCeEEEEecCHHHHHHHHHhcc
Confidence 455 999999999999999997 4 1 1 11 14456899999999999999999774
No 219
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=51.86 E-value=58 Score=29.81 Aligned_cols=67 Identities=13% Similarity=0.121 Sum_probs=47.4
Q ss_pred cEEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCC-CCCcc-ceEEEEeCChHHHHHHHHhhcCCCcee
Q 001183 4 ATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRS-NWKSR-GIGRVQFTSLDFKSKAQNLSLNDKLVF 75 (1131)
Q Consensus 4 ~ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~-tg~sR-gfgfV~f~~~e~A~~Ai~~~~~~~~~~ 75 (1131)
.+|-|-+||.+.|++++.+-+... + .+.-..-..-+- .+.++ .-|+|.|.+.|++..-.+..+ |..|
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~-~--~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~--g~~F 70 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPM-P--EHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFD--GYVF 70 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSC-C--CEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHT--TCEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCc-c--cceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhC--CcEE
Confidence 467799999999999999999986 3 444444433332 22222 558999999998888888884 5443
No 220
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=46.10 E-value=11 Score=49.48 Aligned_cols=52 Identities=27% Similarity=0.473 Sum_probs=38.4
Q ss_pred Eee-eEEEeeCCCCCCCCeeEEEEEccCcccccCCcceEEecCCCCCCCCCcCC--CCCCCCCeEEEee
Q 001183 783 VKG-KVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECS--GGDLDGDIFFISW 848 (1131)
Q Consensus 783 i~G-~VlV~RnP~lhPGDIr~v~AV~~P~L~~~hl~dvIVFp~kG~Rplps~lS--GGDLDGD~y~ViW 848 (1131)
+.| .|+.-|.|+||.--||=++++-.|.-. =|=+|.-|+ ..|+|||+..|--
T Consensus 416 i~gd~VLlNRqPTLHr~sIma~~~~l~~~kt--------------irlnp~vC~~yNADFDGDeMnvHv 470 (1407)
T 3lu0_D 416 IREHPVLLNRAPTLHRLGIQAFEPVLIEGKA--------------IQLHPLVCAAYNADFDGDQMAVHV 470 (1407)
T ss_dssp TTSCCEEEEESSCCSGGGEEEEEEEEESSSS--------------EEECTGGGGTTTCCSSSCEEEEEC
T ss_pred hhceeeeecCCcccccccceeeeEEecCCce--------------EEeChhhcccccCCcccceeeeec
Confidence 344 689999999999999999887665421 122445554 6899999998854
No 221
>1b64_A Elongation factor 1-beta; guanine nucleotide exchange factor, G-protein, translation elongation; NMR {Homo sapiens} SCOP: d.58.12.1
Probab=41.36 E-value=25 Score=32.33 Aligned_cols=58 Identities=16% Similarity=0.318 Sum_probs=48.8
Q ss_pred hhHHHHHHHHHhhcCeEEcCeEEEEeeecccccccCeEEEEecCCCCCHHHHHHHcCCCCC
Q 001183 455 RTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNK 515 (1131)
Q Consensus 455 ~~~i~~Rv~~~L~~Gi~I~gr~y~FLafS~SqlR~~s~wff~~~~~~t~~~Ir~wmG~F~~ 515 (1131)
.+++.++|+.++.+|+.+|+-+.+.+||+ ++.=.+.+.-++...+.+++.+-+..|..
T Consensus 21 l~~L~~~Vr~i~~~Gl~wg~~k~~piafG---ikkL~i~~vveDd~v~tD~lee~i~~~ed 78 (91)
T 1b64_A 21 MAKLEECVRSIQADGLVWGSSKLVPVGYG---IKKLQIQCVVEDDKVGTDMLEEQITAFED 78 (91)
T ss_dssp HHHHHHHHHHCCCTTCEEEEEEEEESSSS---CEEEEEEEEECTTSSCHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhCcCCcEEEEEEEEEEEee---EEEEEEEEEEECCccChHHHHHHHHhccC
Confidence 47888999999999999999999999999 56556666677777899999888877765
No 222
>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2 PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D* 2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D* 3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D
Probab=40.45 E-value=15 Score=48.74 Aligned_cols=52 Identities=27% Similarity=0.530 Sum_probs=38.7
Q ss_pred eEee-eEEEeeCCCCCCCCeeEEEEEccCcccccCCcceEEecCCCCCCCCCcCC--CCCCCCCeEEEe
Q 001183 782 IVKG-KVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECS--GGDLDGDIFFIS 847 (1131)
Q Consensus 782 vi~G-~VlV~RnP~lhPGDIr~v~AV~~P~L~~~hl~dvIVFp~kG~Rplps~lS--GGDLDGD~y~Vi 847 (1131)
++.| .|+.-|.|+||.--||=.+++-.|.- - =|=||.-|+ ..|+|||+-.|-
T Consensus 694 vidgd~VLlNRqPTLHRlSIqAf~~kl~~gk---T-----------iRLhplVC~pyNADFDGDEMnvH 748 (1524)
T 2a6h_D 694 VIHGKVVLLNRAPTLHRLGIQAFQPVLVEGQ---S-----------IQLHPLVCEAFNADFDGDQMAVH 748 (1524)
T ss_dssp HSTTCCEEEECSSCCSGGGEEEEEEEEESSS---C-----------EEECSGGGTTTTCCTTTCEEEEE
T ss_pred eccCceEEEccCCcccccccceeEEEEcCCc---c-----------ceeChhhcCCccCCcccceeeEe
Confidence 4566 79999999999999999998855531 1 122455555 689999999884
No 223
>4ayb_A DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_A 2y0s_A 2waq_A 4b1o_A 4b1p_W 2pmz_A 3hkz_A
Probab=39.40 E-value=15 Score=46.71 Aligned_cols=52 Identities=25% Similarity=0.340 Sum_probs=38.8
Q ss_pred eEee-eEEEeeCCCCCCCCeeEEEEEccCcccccCCcceEEecCCCCCCCCCcCC--CCCCCCCeEEEe
Q 001183 782 IVKG-KVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECS--GGDLDGDIFFIS 847 (1131)
Q Consensus 782 vi~G-~VlV~RnP~lhPGDIr~v~AV~~P~L~~~hl~dvIVFp~kG~Rplps~lS--GGDLDGD~y~Vi 847 (1131)
++.| .|+.-|.|.||.--||=.+++-.|.-.. |=||.-|+ ..|+|||+-.|-
T Consensus 411 l~dgd~VLlNRqPTLHr~si~a~~~~l~~gkti--------------rlhp~vC~~yNADFDGDeMnvH 465 (880)
T 4ayb_A 411 LTDGDVVLFNRQPSLHRISMMAHRVRVLKGLTF--------------RLNLLVCPPYNADFDGDEMNLH 465 (880)
T ss_dssp CCTTCEEEEECSSCCSGGGEEEEEEEECSSSSE--------------EECGGGHHHHTCCSSSCEEEEE
T ss_pred eecCcEEEecCCCcccccceeeeeeecccCcee--------------eeccccccccccCcccceeEEe
Confidence 3455 6899999999999999999998774210 11444444 689999999884
No 224
>1gh8_A Translation elongation factor 1BETA; alpha-beta sandwich, gene regulation, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.58.12.1
Probab=36.41 E-value=29 Score=31.76 Aligned_cols=60 Identities=15% Similarity=0.167 Sum_probs=48.8
Q ss_pred hhHHHHHHHHHhhcCeEEcCeEEEEeeecccccccCeEEEEecCCCCCHHHHHHHcCCCCCCC
Q 001183 455 RTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIR 517 (1131)
Q Consensus 455 ~~~i~~Rv~~~L~~Gi~I~gr~y~FLafS~SqlR~~s~wff~~~~~~t~~~Ir~wmG~F~~i~ 517 (1131)
.+++.++|+.++.+|+.+++-..+.+||+ |+.=.+.+.-++...+.+.+-+-+..|...+
T Consensus 19 l~~L~~~vk~~~~~gl~w~~~k~~piafG---lk~L~i~~vveD~~~~td~lee~i~~~e~Vq 78 (89)
T 1gh8_A 19 LEALKKEIQERIPEGTELHKIDEEPIAFG---LVALNVMVVVGDAEGGTEAAEESLSGIEGVS 78 (89)
T ss_dssp HHHHHHHHHHHSCTTSEECCCCEEECSSS---CEEEEEEEEESSSCGGGGHHHHHHTTSCSSE
T ss_pred HHHHHHHHHHhccCCcEEeeeeEEEEEcc---eeeEEEEEEEEcCCcChHHHHHHHhccCCcc
Confidence 47889999999999999999999999999 5655566666776678888887777776543
No 225
>1f60_B Elongation factor EEF1BA; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: d.58.12.1 PDB: 1g7c_B* 2b7c_B 2b7b_B 1ije_B* 1ijf_B*
Probab=35.51 E-value=28 Score=32.23 Aligned_cols=58 Identities=14% Similarity=0.279 Sum_probs=47.5
Q ss_pred hhHHHHHHHHHhhcCeEEcCeEEEEeeecccccccCeEEEEecCCCCCHHHHHHHcCCCCC
Q 001183 455 RTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNK 515 (1131)
Q Consensus 455 ~~~i~~Rv~~~L~~Gi~I~gr~y~FLafS~SqlR~~s~wff~~~~~~t~~~Ir~wmG~F~~ 515 (1131)
.+++.+.|+.++.+|+.+|+-+.+.+||+ |+.=.+.+.-++...+.+++-+-+..|..
T Consensus 24 l~~L~~~Vr~i~~~Gl~wg~~k~~piafG---lkkL~i~~vveDd~~~tD~lee~i~~~ed 81 (94)
T 1f60_B 24 LEEMVANVKAIEMEGLTWGAHQFIPIGFG---IKKLQINCVVEDDKVSLDDLQQSIEEDED 81 (94)
T ss_dssp HHHHHHHHHTCCCTTEEEEEEEEEEEETT---EEEEEEEEEEETTTCCHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHhCcCCcEEEEEEEEEEeee---eEEEEEEEEEECCccChHHHHHHHHhccC
Confidence 47888999999999999999999999999 55555666667777888888877766654
No 226
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=33.65 E-value=70 Score=31.33 Aligned_cols=76 Identities=13% Similarity=0.222 Sum_probs=50.2
Q ss_pred EEEEeCCCCcCCHHHHHHHHhhccCCceEEE-EEEee------------cCCCC-CccceEEEEeCChHHHHHHHHhhcC
Q 001183 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFA-LEIIT------------DRSNW-KSRGIGRVQFTSLDFKSKAQNLSLN 70 (1131)
Q Consensus 5 ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~-~~i~~------------dr~tg-~sRgfgfV~f~~~e~A~~Ai~~~~~ 70 (1131)
-|-|.|||.+. +..+.+.|+++ |+|.. ..+.. .+..+ .....--|+|+++.+|.+|+..
T Consensus 9 ~VtVFGFp~~~-~~~VI~~Fs~~---G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~--- 81 (132)
T 3p3d_A 9 AILVFGYPETM-ANQVIAYFQEF---GTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE--- 81 (132)
T ss_dssp EEEEECCCGGG-HHHHHHHHGGG---SCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT---
T ss_pred EEEEEecCHHH-HHHHHHHHHhh---ceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh---
Confidence 47899997765 45677889997 56543 11100 00011 0235668999999988888776
Q ss_pred CCceecCceeEeecCCC
Q 001183 71 DKLVFNSQNLKISETHS 87 (1131)
Q Consensus 71 ~~~~~~gr~L~V~~a~~ 87 (1131)
||..++|.-+=|-+-.+
T Consensus 82 NG~ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 82 NGAVFNGVLLGVIPYTK 98 (132)
T ss_dssp TTCEETTEECEEEECCH
T ss_pred CCeEeCcEEEEEEECCH
Confidence 58999998777776544
No 227
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Probab=30.32 E-value=24 Score=47.99 Aligned_cols=53 Identities=23% Similarity=0.239 Sum_probs=39.6
Q ss_pred eeEee-eEEEeeCCCCCCCCeeEEEEEccCcccccCCcceEEecCCCCCCCCCcCC--CCCCCCCeEEEe
Q 001183 781 SIVKG-KVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECS--GGDLDGDIFFIS 847 (1131)
Q Consensus 781 ~vi~G-~VlV~RnP~lhPGDIr~v~AV~~P~L~~~hl~dvIVFp~kG~Rplps~lS--GGDLDGD~y~Vi 847 (1131)
.++.| .|++-|.|.||.--||=.+++-.|.-.. |=||.-|+ ..|+|||+-.|-
T Consensus 435 ~l~~gd~VllNRqPTLHr~si~a~~~~v~~~~ti--------------rlnp~vC~~yNADFDGDeMnvH 490 (1733)
T 1twf_A 435 HIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTF--------------RLNLSVTSPYNADFDGDEMNLH 490 (1733)
T ss_dssp ECCTTCEEEEECSSCCSGGGEEEEEEEEESSSSE--------------EECGGGHHHHTCCSSSCEEEEE
T ss_pred eeccCCEEEEeCCCccccccceeEEEEEccCCeE--------------EeChhhcCCCCccchhhhhhhh
Confidence 34566 7999999999999999988887774210 22444555 689999999885
No 228
>2yy3_A Elongation factor 1-beta; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 2.50A {Pyrococcus horikoshii}
Probab=29.03 E-value=36 Score=31.23 Aligned_cols=59 Identities=12% Similarity=0.215 Sum_probs=47.1
Q ss_pred hhHHHHHHHHHhhcCeEEcCeEEEEeeecccccccCeEEEEecCCCC-CHHHHHHHcCCCCCC
Q 001183 455 RTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEV-SAEDVRGWMGCFNKI 516 (1131)
Q Consensus 455 ~~~i~~Rv~~~L~~Gi~I~gr~y~FLafS~SqlR~~s~wff~~~~~~-t~~~Ir~wmG~F~~i 516 (1131)
.+++.++|+.++.+|+.+++-..+.+||+ |+.=.+.+.-++... +.+.+-+-+..|...
T Consensus 21 l~~L~~~vk~~~~~gl~w~~~k~~pIafG---lk~L~i~~vveD~~~~~tD~lee~i~~~e~V 80 (91)
T 2yy3_A 21 LDELEEKLKKVIPEKYGLAKVEREPIAFG---LVALKFYVLGRDEEGYSFDEVAEKFEEVENV 80 (91)
T ss_dssp HHHHHHHHHHHSCTTCEEEEEEEEECTTS---CEEEEEEEEECSSTTCCHHHHHHHHHHSTTE
T ss_pred HHHHHHHHHHhccCCcEEeeeeEEEEEcc---eeeEEEEEEEECCCccccHHHHHHHhcCCCc
Confidence 47889999999999999999999999999 565556666677667 888887766556543
No 229
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=25.76 E-value=66 Score=26.73 Aligned_cols=43 Identities=30% Similarity=0.416 Sum_probs=30.7
Q ss_pred cccHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcc
Q 001183 638 FLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLN 686 (1131)
Q Consensus 638 ~LNRQ~I~iL~~lGV~~~vF~~lq~~~l~~l~~~l~d~~~a~~~L~~~~ 686 (1131)
-.|||.+..|-++|.+.+ ..+.+|+.... ...+.|+++|.+++
T Consensus 7 ~vn~qmlq~L~eMGFd~e----rae~Alk~Tg~--~Gle~AmewL~k~~ 49 (54)
T 2cos_A 7 GVNRQMLQELVNAGCDQE----MAGRALKQTGS--RSIEAALEYISKMS 49 (54)
T ss_dssp SCCHHHHHHHHHHHCCHH----HHHHHHHHHTS--CCHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHcCCCHH----HHHHHHHHhCc--ccHHHHHHHHHHhc
Confidence 689999999999999975 33344443322 34778888887654
No 230
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=21.64 E-value=1.1e+02 Score=36.15 Aligned_cols=53 Identities=19% Similarity=0.285 Sum_probs=42.3
Q ss_pred EEEEeCCCCcCCHHHHHHHHhhccCCceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhc
Q 001183 5 TVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSL 69 (1131)
Q Consensus 5 ti~Vgnl~~~~t~~~L~~~fe~~~G~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~ 69 (1131)
.++|+ ||......+|.+.|+.+ | .| .++ |-+..-|||.|.+++.|..|+.+++
T Consensus 442 vl~v~-f~~~~~~~~i~~~fs~f-g--~v-~V~-------widdt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 442 VLHVT-FPKEWKTSDLYQLFSAF-G--NI-QIS-------WIDDTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp EEEEE-CCTTCCHHHHHHHGGGG-C--CC-EEE-------ECSSSEEEEECSCHHHHHHHHHHHT
T ss_pred EEEEe-CCCCCCHHHHHHHHHhc-C--CE-EEE-------EEcCCeEEEEECCHHHHHHHHHHHH
Confidence 46676 99999999999999996 4 32 232 4445669999999999999999985
No 231
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=21.49 E-value=1.2e+02 Score=25.83 Aligned_cols=64 Identities=11% Similarity=0.123 Sum_probs=43.2
Q ss_pred CCcCCHHHHHHHHhhccC--CceEEEEEEeecCCCCCccceEEEEeCChHHHHHHHHhhcCCCceecCceeEeecCC
Q 001183 12 PQTAIAKDLLLFLESKLG--KNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKISETH 86 (1131)
Q Consensus 12 ~~~~t~~~L~~~fe~~~G--~G~V~~~~i~~dr~tg~sRgfgfV~f~~~e~A~~Ai~~~~~~~~~~~gr~L~V~~a~ 86 (1131)
-..+...+|..++....| ...|-+++|.. .|.||+-... .|..+++.++ +..+.|+.++|+.+.
T Consensus 10 k~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~~-~~~~~~~~l~--~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 10 KKKIRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILNG-KGPHVLKVMK--NTTVKGKQLKVNKAN 75 (76)
T ss_dssp C----CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECTT-CHHHHHHHHT--TCCC---CCCEEECC
T ss_pred ccCCCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECHH-HHHHHHHHhc--cccCcCceEEEEECC
Confidence 345678899999997654 45666666643 4889999765 6888999984 678899999998764
No 232
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=21.37 E-value=42 Score=45.68 Aligned_cols=54 Identities=22% Similarity=0.194 Sum_probs=39.1
Q ss_pred eeEee-eEEEeeCCCCCCCCeeEEEEEccCcccccCCcceEEecCCCCCCCCCcCC--CCCCCCCeEEEee
Q 001183 781 SIVKG-KVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECS--GGDLDGDIFFISW 848 (1131)
Q Consensus 781 ~vi~G-~VlV~RnP~lhPGDIr~v~AV~~P~L~~~hl~dvIVFp~kG~Rplps~lS--GGDLDGD~y~ViW 848 (1131)
.++.| .|+.-|.|+||.--||=.+++-.|.-.. |=||.-|+ ..|+|||+-.|--
T Consensus 441 ~l~~gd~Vl~NRqPtLHr~sima~~~~v~~gkti--------------rlh~~vC~~yNADFDGDeMnvHv 497 (1752)
T 3h0g_A 441 HIRDGDVVIFNRQPSLHKMSMMGHRIRVMPYSTF--------------RLNLSVTSPYNADFDGDEMNMHV 497 (1752)
T ss_dssp CCCSCCEEEEECSSCCSGGGEEEEECCCCSSSSE--------------EEEGGGSGGGTCCSSSCEEEEEC
T ss_pred eeccCCeEEEecCcccchhhcccccceeecCcee--------------eechhhCCCccCccccceeeeec
Confidence 35567 7899999999999999888887774110 11333343 6899999998864
Done!