Citrus Sinensis ID: 001183

Local Sequence Feature Prediction

Prediction and Method	Result

Residue Number Marker

Protein Sequence

Secondary Structure (Consensus)

Disordered Region (Consensus)

Transmembrane Helix (Consensus)

Signal Peptide (Consensus)

Coiled Coil (COILS)

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130-

MVLATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKISETHSDIVPRPVKAQHRVEDGVLHVGVMCKEERLRVLQTFEGVRGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFSLDEGATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKSIGCSTSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTTSEIVPLVKCRPGFNLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSCKENEHPQLASAWYHVTYSPSYCKERMALLSFPWIVGDILLNIKSVNSRKA

ccEEEEEEEcccccccHHHHHHHHHHccccccEEEEEEEEccccccccccEEEEEcccHHHHHHHHHcccccEEEccCEEECcccccccccccccccccccccEEEEEEECcccEEEEEEEEcccEEEEEccccEEEEEEccccccccccccccccccccccEEEEEEEccccEEEEEEEcccccccEEEEEEEcccccEEEEcccccccccccccccccccccccccCEEEccccccccccccEEEEEEEccccccccHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccccccccccccEEEEEEEEcccEEEEcccCCcccHHHHHHcccccccEEEEEEEcccccccccccccccHcccccccccHHHHHHHHHHHHHccEEEccEEEEEEEEccccccccCEEEECccccccHHHHHHHHccccccccHHHHHHHHHccccccccccccccccEEEECccccccccccEEECcccccccHHHHHHHHHHccccccccEEEEEccccccEEEECcccccEEEEcccccccccccccEEEEEcccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccEEcccccEEEEEcccccccccccEEEEEccccccccccccccccccccccEEEEEEEEEEEcccccccccEEEEEEEcccccccccccEEEEccccccccccccccccccccEEEEEEccccccccccccccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHcccc

*VLATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKISETHSDIVPRPVKAQHRVEDGVLHVGVMCKEERLRVLQTFEGVRGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFSLDEGATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKSIGCSTSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTTSEIVPLVKCRPGFNLSHEVLFQLNSLVHNQKVSLVAADAELIQILSGLSMETALMVLQKLHKLKSICYDPVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFSKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVRGWMGCFNKIRSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDEVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELE**DQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSCKENEHPQLASAWYHVTYSPSYCKERMALLSFPWIVGDILLNIKSV*****

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Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries

Annotation	Function Description	Confidence Level	Reference Protein
RNA-dependent RNA polymerase 2	RNA-dependent direct polymerase involved in the production of small interfering RNAs (siRNAs). Required for the biogenesis of endogenous siRNAs of 24 nucleotide which derive from heterochromatin and DNA repeats such as transposons or endogenous gene tandem repeats, such as repeats present in FWA gene. Involved in transcriptional gene silencing (TGS). Component of the RNA-directed DNA methylation (RdDM) silencing pathway that utilizes siRNAs to guide DNA methyltransferases to asymmetric cytosines. Involved in control of flowering time through RdDM of FWA locus. Required for reception of long-distance mRNA silencing in the shoot. Required for the formation of telomeric siRNAs and the RNA-dependent DNA methylation of asymmetric cytosines in telomeric (5'-CCCTAAA-3') repeats.	probable	O82504
Probable RNA-dependent RNA polymerase 2	Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs).	probable	Q7XM31

Prediction of Enzyme Commission Number

No confident prediction of EC number!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 2J7N, chain A
Confidence level:very confident
Coverage over the Query: 397-477,493-763,775-967
View the alignment between query and template
View the model in PyMOL

Template: 2DNG, chain A
Confidence level:confident
Coverage over the Query: 3-90
View the alignment between query and template
View the model in PyMOL

Template: 2GHP, chain A
Confidence level:confident
Coverage over the Query: 3-88,99-111
View the alignment between query and template
View the model in PyMOL