Query 001184
Match_columns 1130
No_of_seqs 850 out of 4614
Neff 10.5
Searched_HMMs 46136
Date Thu Mar 28 18:07:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001184.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001184hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0293 WD40 repeat-containing 100.0 2.4E-70 5.2E-75 545.1 35.0 491 5-663 17-514 (519)
2 KOG0275 Conserved WD40 repeat- 100.0 2.7E-64 5.9E-69 485.4 31.7 490 4-660 6-507 (508)
3 KOG0319 WD40-repeat-containing 100.0 4.2E-56 9.1E-61 476.4 47.8 575 353-1040 25-620 (775)
4 KOG0319 WD40-repeat-containing 100.0 8.1E-53 1.8E-57 451.2 44.7 574 320-995 25-620 (775)
5 KOG0318 WD40 repeat stress pro 100.0 9.1E-50 2E-54 410.9 62.5 568 353-1093 24-602 (603)
6 KOG0291 WD40-repeat-containing 100.0 8.7E-49 1.9E-53 419.9 65.3 584 351-1096 18-712 (893)
7 KOG0318 WD40 repeat stress pro 100.0 6.8E-49 1.5E-53 404.4 59.3 533 344-1039 56-602 (603)
8 KOG0291 WD40-repeat-containing 100.0 2.9E-48 6.3E-53 416.0 62.4 552 343-1046 51-716 (893)
9 KOG0271 Notchless-like WD40 re 100.0 4.8E-50 1E-54 396.4 29.3 332 337-795 105-479 (480)
10 KOG0306 WD40-repeat-containing 100.0 1.7E-47 3.7E-52 409.9 49.7 554 320-1040 37-665 (888)
11 KOG0271 Notchless-like WD40 re 100.0 1.4E-49 3E-54 393.2 29.4 367 404-945 110-479 (480)
12 KOG0306 WD40-repeat-containing 100.0 1.1E-46 2.4E-51 403.6 51.9 570 420-1097 33-626 (888)
13 KOG1408 WD40 repeat protein [F 100.0 4.4E-43 9.5E-48 372.3 45.1 610 351-1094 41-714 (1080)
14 KOG0273 Beta-transducin family 100.0 1.9E-40 4E-45 338.1 31.6 301 338-664 169-484 (524)
15 KOG1539 WD repeat protein [Gen 100.0 1.8E-37 4E-42 337.4 55.3 584 353-1093 39-648 (910)
16 KOG1063 RNA polymerase II elon 100.0 3.8E-38 8.2E-43 335.9 44.8 603 320-1039 28-763 (764)
17 KOG1063 RNA polymerase II elon 100.0 3.4E-37 7.5E-42 328.6 49.2 595 353-1093 20-763 (764)
18 KOG0272 U4/U6 small nuclear ri 100.0 2.1E-40 4.6E-45 333.4 23.3 283 344-660 172-458 (459)
19 KOG1408 WD40 repeat protein [F 100.0 3.4E-38 7.3E-43 335.3 41.0 594 320-1040 52-714 (1080)
20 KOG0279 G protein beta subunit 100.0 8.7E-39 1.9E-43 304.8 32.1 292 345-662 13-313 (315)
21 KOG0286 G-protein beta subunit 100.0 8.8E-38 1.9E-42 299.6 32.8 289 342-660 49-343 (343)
22 KOG0276 Vesicle coat complex C 100.0 8.5E-37 1.8E-41 320.9 42.3 474 345-994 11-490 (794)
23 KOG0263 Transcription initiati 100.0 9.1E-38 2E-42 340.5 34.9 277 331-620 361-651 (707)
24 KOG0272 U4/U6 small nuclear ri 100.0 7.3E-39 1.6E-43 322.4 24.0 284 407-795 173-458 (459)
25 KOG1539 WD repeat protein [Gen 100.0 2.5E-35 5.5E-40 320.9 49.2 562 346-995 75-649 (910)
26 KOG0292 Vesicle coat complex C 100.0 1.2E-34 2.6E-39 316.1 47.9 558 346-1044 8-599 (1202)
27 KOG0286 G-protein beta subunit 100.0 3.4E-36 7.5E-41 288.7 31.1 285 404-794 50-342 (343)
28 KOG0276 Vesicle coat complex C 100.0 9.8E-35 2.1E-39 305.5 44.8 465 405-1039 9-490 (794)
29 KOG0315 G-protein beta subunit 100.0 1.3E-35 2.8E-40 277.9 29.1 284 361-676 11-301 (311)
30 KOG2106 Uncharacterized conser 100.0 5.5E-33 1.2E-37 285.4 49.1 524 414-1092 70-625 (626)
31 KOG0295 WD40 repeat-containing 100.0 1.7E-35 3.6E-40 292.5 26.4 291 338-661 99-405 (406)
32 KOG0292 Vesicle coat complex C 100.0 7.4E-33 1.6E-37 302.1 47.3 480 405-1047 5-525 (1202)
33 KOG0315 G-protein beta subunit 100.0 3.8E-34 8.3E-39 268.0 31.6 296 511-926 10-309 (311)
34 KOG2106 Uncharacterized conser 100.0 6.6E-32 1.4E-36 277.5 48.5 526 351-1038 69-625 (626)
35 KOG0279 G protein beta subunit 100.0 8.6E-34 1.9E-38 270.8 31.9 249 403-664 9-264 (315)
36 KOG0296 Angio-associated migra 100.0 3.2E-33 6.9E-38 276.8 34.7 338 449-947 59-398 (399)
37 KOG0645 WD40 repeat protein [G 100.0 4.4E-33 9.5E-38 264.7 30.7 285 345-662 12-311 (312)
38 KOG0284 Polyadenylation factor 100.0 5.1E-35 1.1E-39 293.1 18.2 283 346-662 95-380 (464)
39 KOG0265 U5 snRNP-specific prot 100.0 1.7E-33 3.8E-38 271.4 27.5 285 343-659 43-335 (338)
40 KOG0273 Beta-transducin family 100.0 2.9E-33 6.3E-38 285.7 30.6 280 346-662 234-523 (524)
41 KOG0296 Angio-associated migra 100.0 1.3E-32 2.8E-37 272.5 34.1 329 404-905 59-398 (399)
42 KOG0285 Pleiotropic regulator 100.0 1.2E-33 2.5E-38 278.1 26.5 293 337-663 140-440 (460)
43 KOG0316 Conserved WD40 repeat- 100.0 6E-33 1.3E-37 257.7 26.1 288 337-661 6-298 (307)
44 KOG2048 WD40 repeat protein [G 100.0 3E-29 6.4E-34 268.3 54.8 549 408-1093 24-601 (691)
45 KOG0285 Pleiotropic regulator 100.0 1.6E-32 3.4E-37 270.1 25.1 245 404-664 146-391 (460)
46 KOG0266 WD40 repeat-containing 100.0 4.9E-32 1.1E-36 309.4 32.4 285 346-662 158-454 (456)
47 KOG0295 WD40 repeat-containing 100.0 2E-32 4.4E-37 270.8 25.0 300 449-946 103-405 (406)
48 KOG0265 U5 snRNP-specific prot 100.0 8.5E-32 1.8E-36 259.8 27.0 250 403-663 41-297 (338)
49 KOG1445 Tumor-specific antigen 100.0 8.7E-31 1.9E-35 275.4 33.4 644 345-1042 77-847 (1012)
50 KOG0281 Beta-TrCP (transducin 100.0 4.4E-33 9.6E-38 272.5 14.7 274 346-665 196-480 (499)
51 KOG0293 WD40 repeat-containing 100.0 1.4E-31 3.1E-36 268.3 25.4 291 404-905 219-513 (519)
52 KOG0645 WD40 repeat protein [G 100.0 4.9E-30 1.1E-34 244.1 32.0 242 404-662 9-261 (312)
53 KOG0263 Transcription initiati 100.0 1.8E-31 4E-36 291.4 23.8 245 409-664 378-651 (707)
54 KOG2048 WD40 repeat protein [G 100.0 1.1E-27 2.4E-32 256.3 51.8 499 454-1093 25-548 (691)
55 KOG0282 mRNA splicing factor [ 100.0 6.6E-32 1.4E-36 277.3 17.6 291 337-660 203-503 (503)
56 KOG0284 Polyadenylation factor 100.0 8.2E-32 1.8E-36 270.2 17.7 284 409-798 96-381 (464)
57 cd00200 WD40 WD40 domain, foun 100.0 1.8E-29 4E-34 276.8 36.3 282 345-660 7-289 (289)
58 KOG0266 WD40 repeat-containing 100.0 1.2E-29 2.5E-34 289.9 34.4 291 766-1093 158-454 (456)
59 KOG0278 Serine/threonine kinas 100.0 5.3E-31 1.1E-35 246.8 18.2 284 344-664 11-299 (334)
60 KOG0282 mRNA splicing factor [ 100.0 6E-31 1.3E-35 270.3 18.9 287 764-1091 211-503 (503)
61 PLN00181 protein SPA1-RELATED; 100.0 1.4E-28 2.9E-33 304.2 40.2 292 344-661 480-792 (793)
62 KOG0316 Conserved WD40 repeat- 100.0 2.9E-29 6.3E-34 233.3 23.5 248 401-664 9-259 (307)
63 KOG0275 Conserved WD40 repeat- 100.0 2.2E-30 4.8E-35 251.0 16.3 293 766-1092 212-508 (508)
64 KOG0641 WD40 repeat protein [G 100.0 7.8E-28 1.7E-32 221.8 31.7 310 339-662 24-349 (350)
65 KOG0310 Conserved WD40 repeat- 100.0 5.9E-29 1.3E-33 256.4 26.4 281 346-660 25-307 (487)
66 KOG0281 Beta-TrCP (transducin 100.0 3.4E-30 7.4E-35 252.3 16.2 230 409-664 197-430 (499)
67 KOG0313 Microtubule binding pr 100.0 1.4E-28 3E-33 245.1 26.6 287 338-661 96-417 (423)
68 cd00200 WD40 WD40 domain, foun 100.0 1.2E-27 2.5E-32 262.6 35.0 247 404-664 4-251 (289)
69 PLN00181 protein SPA1-RELATED; 100.0 1.5E-27 3.3E-32 294.9 39.6 270 369-664 457-740 (793)
70 KOG0288 WD40 repeat protein Ti 100.0 2.5E-29 5.5E-34 252.9 18.0 291 336-659 163-458 (459)
71 KOG0640 mRNA cleavage stimulat 100.0 2.1E-28 4.6E-33 236.4 23.4 363 166-618 46-426 (430)
72 KOG0973 Histone transcription 100.0 3E-28 6.5E-33 275.9 28.1 305 346-664 12-357 (942)
73 KOG1407 WD40 repeat protein [F 100.0 1.8E-27 3.9E-32 225.3 28.2 274 345-653 18-293 (313)
74 KOG0643 Translation initiation 100.0 2.5E-27 5.4E-32 224.9 27.2 286 343-664 6-319 (327)
75 KOG0313 Microtubule binding pr 100.0 2.6E-27 5.6E-32 236.1 27.6 285 452-947 103-418 (423)
76 KOG0283 WD40 repeat-containing 100.0 6E-27 1.3E-31 258.9 29.7 295 345-663 265-577 (712)
77 KOG0278 Serine/threonine kinas 100.0 5.4E-28 1.2E-32 226.7 18.1 290 534-950 7-300 (334)
78 KOG0647 mRNA export protein (c 100.0 1.1E-26 2.5E-31 224.6 26.9 273 346-651 26-312 (347)
79 KOG0274 Cdc4 and related F-box 100.0 1E-26 2.3E-31 262.8 30.2 278 345-665 206-485 (537)
80 PTZ00421 coronin; Provisional 100.0 6.1E-26 1.3E-30 257.0 35.3 287 346-643 19-314 (493)
81 KOG0973 Histone transcription 100.0 1.2E-26 2.6E-31 263.0 28.2 304 766-1096 12-358 (942)
82 KOG0643 Translation initiation 100.0 5.3E-26 1.2E-30 215.9 27.9 235 404-653 5-252 (327)
83 KOG0640 mRNA cleavage stimulat 100.0 1.1E-26 2.5E-31 224.5 23.2 311 335-661 100-425 (430)
84 KOG0277 Peroxisomal targeting 100.0 9.3E-27 2E-31 219.5 21.9 283 351-661 12-308 (311)
85 KOG0305 Anaphase promoting com 100.0 1.3E-26 2.9E-31 250.3 26.2 302 287-620 154-463 (484)
86 KOG0772 Uncharacterized conser 99.9 3.9E-26 8.5E-31 235.8 25.7 295 766-1094 166-489 (641)
87 KOG1446 Histone H3 (Lys4) meth 99.9 8.4E-25 1.8E-29 214.5 33.3 281 346-662 13-303 (311)
88 KOG0641 WD40 repeat protein [G 99.9 9.9E-25 2.2E-29 201.4 31.5 307 766-1093 31-349 (350)
89 KOG0277 Peroxisomal targeting 99.9 2.6E-26 5.6E-31 216.5 20.3 266 323-617 35-308 (311)
90 KOG0305 Anaphase promoting com 99.9 1.1E-25 2.5E-30 243.2 28.2 278 350-664 180-463 (484)
91 KOG1445 Tumor-specific antigen 99.9 4.5E-24 9.8E-29 225.2 39.3 623 445-1097 70-848 (1012)
92 KOG0299 U3 snoRNP-associated p 99.9 1.5E-25 3.2E-30 229.4 26.4 294 344-659 139-453 (479)
93 KOG0772 Uncharacterized conser 99.9 4.7E-26 1E-30 235.3 22.4 293 345-661 165-486 (641)
94 KOG2096 WD40 repeat protein [G 99.9 7.1E-25 1.5E-29 213.2 28.3 253 769-1038 134-401 (420)
95 KOG0308 Conserved WD40 repeat- 99.9 3E-26 6.5E-31 243.6 20.5 241 414-664 29-287 (735)
96 KOG1407 WD40 repeat protein [F 99.9 5.5E-25 1.2E-29 208.5 26.5 247 405-664 16-263 (313)
97 KOG0294 WD40 repeat-containing 99.9 6.4E-25 1.4E-29 213.9 27.1 243 830-1097 40-285 (362)
98 KOG1446 Histone H3 (Lys4) meth 99.9 6.1E-24 1.3E-28 208.5 34.0 294 489-948 6-304 (311)
99 KOG1963 WD40 repeat protein [G 99.9 1.8E-23 3.9E-28 232.0 41.4 506 413-1099 20-589 (792)
100 KOG0283 WD40 repeat-containing 99.9 3.2E-25 7E-30 245.3 26.2 274 765-1042 265-579 (712)
101 KOG0310 Conserved WD40 repeat- 99.9 6.5E-25 1.4E-29 226.7 25.6 285 766-1096 25-312 (487)
102 PTZ00420 coronin; Provisional 99.9 5.9E-24 1.3E-28 241.1 36.1 255 366-644 50-318 (568)
103 KOG0299 U3 snoRNP-associated p 99.9 8.4E-25 1.8E-29 224.0 25.8 252 404-666 137-414 (479)
104 KOG0274 Cdc4 and related F-box 99.9 5.1E-25 1.1E-29 249.1 26.4 262 325-626 227-490 (537)
105 PTZ00421 coronin; Provisional 99.9 2.8E-24 6E-29 243.5 31.9 248 409-664 20-292 (493)
106 KOG0300 WD40 repeat-containing 99.9 5.5E-25 1.2E-29 213.3 22.1 296 338-664 138-478 (481)
107 KOG0301 Phospholipase A2-activ 99.9 1.5E-24 3.2E-29 232.8 27.0 281 340-663 6-289 (745)
108 KOG0288 WD40 repeat protein Ti 99.9 9.2E-26 2E-30 227.4 16.6 247 404-664 170-419 (459)
109 KOG1274 WD40 repeat protein [G 99.9 3.2E-21 7E-26 214.2 53.0 277 345-659 11-297 (933)
110 KOG0308 Conserved WD40 repeat- 99.9 6.5E-25 1.4E-29 233.5 23.0 294 346-664 20-329 (735)
111 KOG2096 WD40 repeat protein [G 99.9 4.2E-24 9E-29 207.8 26.5 247 404-664 81-362 (420)
112 KOG0289 mRNA splicing factor [ 99.9 4.9E-24 1.1E-28 216.1 27.5 282 347-661 219-505 (506)
113 KOG0268 Sof1-like rRNA process 99.9 1.6E-25 3.4E-30 221.8 15.7 282 344-663 63-346 (433)
114 KOG1036 Mitotic spindle checkp 99.9 1.2E-23 2.5E-28 205.2 27.9 268 346-652 12-294 (323)
115 KOG0639 Transducin-like enhanc 99.9 8E-25 1.7E-29 225.0 20.3 292 339-661 411-703 (705)
116 KOG0289 mRNA splicing factor [ 99.9 1.7E-23 3.7E-28 212.3 28.1 240 766-1038 260-505 (506)
117 KOG0647 mRNA export protein (c 99.9 1.6E-23 3.4E-28 203.0 25.9 249 405-664 23-283 (347)
118 KOG0294 WD40 repeat-containing 99.9 2E-23 4.4E-28 203.5 26.4 243 404-664 38-283 (362)
119 KOG1332 Vesicle coat complex C 99.9 1.8E-24 3.9E-29 203.0 18.2 252 404-662 6-286 (299)
120 KOG0268 Sof1-like rRNA process 99.9 7.8E-25 1.7E-29 216.8 16.3 241 405-664 62-304 (433)
121 KOG0300 WD40 repeat-containing 99.9 1E-23 2.3E-28 204.5 22.4 333 578-1041 139-478 (481)
122 PTZ00420 coronin; Provisional 99.9 7.7E-23 1.7E-27 232.1 32.7 227 427-664 50-295 (568)
123 KOG0264 Nucleosome remodeling 99.9 1.4E-23 3E-28 215.7 22.2 264 339-618 116-404 (422)
124 KOG1332 Vesicle coat complex C 99.9 8E-24 1.7E-28 198.6 18.2 252 345-618 9-286 (299)
125 KOG1273 WD40 repeat protein [G 99.9 4.7E-23 1E-27 200.4 24.0 298 335-664 12-324 (405)
126 KOG1963 WD40 repeat protein [G 99.9 8.9E-21 1.9E-25 210.8 43.8 567 352-1096 21-653 (792)
127 KOG0301 Phospholipase A2-activ 99.9 6.1E-23 1.3E-27 220.5 24.6 276 764-1094 11-289 (745)
128 KOG1036 Mitotic spindle checkp 99.9 7.9E-22 1.7E-26 192.5 28.1 242 407-664 11-264 (323)
129 KOG1274 WD40 repeat protein [G 99.9 5.6E-22 1.2E-26 220.1 30.1 279 766-1087 12-294 (933)
130 KOG0646 WD40 repeat protein [G 99.9 2.3E-22 5E-27 206.7 23.8 223 409-643 81-330 (476)
131 KOG2055 WD40 repeat protein [G 99.9 4.5E-22 9.8E-27 203.8 25.6 290 589-1039 214-512 (514)
132 KOG4283 Transcription-coupled 99.9 7E-22 1.5E-26 190.3 24.8 300 345-661 41-364 (397)
133 KOG1538 Uncharacterized conser 99.9 1E-21 2.2E-26 208.7 27.2 273 349-663 14-294 (1081)
134 KOG2055 WD40 repeat protein [G 99.9 9.7E-22 2.1E-26 201.4 23.9 287 347-662 213-512 (514)
135 KOG0639 Transducin-like enhanc 99.9 4.9E-22 1.1E-26 204.6 21.0 281 766-1092 418-703 (705)
136 KOG0264 Nucleosome remodeling 99.9 1.1E-21 2.4E-26 201.8 23.1 253 405-664 120-406 (422)
137 KOG4283 Transcription-coupled 99.9 3.6E-21 7.9E-26 185.5 25.0 247 764-1038 98-364 (397)
138 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 4.6E-20 1E-24 203.8 37.3 205 837-1048 76-288 (300)
139 KOG0646 WD40 repeat protein [G 99.9 4.5E-21 9.8E-26 197.3 26.2 291 566-976 17-330 (476)
140 KOG4328 WD40 protein [Function 99.9 2.7E-21 5.9E-26 198.0 24.2 293 346-662 185-495 (498)
141 KOG0267 Microtubule severing p 99.9 1.2E-22 2.5E-27 219.1 10.2 235 405-653 24-259 (825)
142 KOG1273 WD40 repeat protein [G 99.9 8.8E-21 1.9E-25 184.7 22.2 251 412-674 26-291 (405)
143 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.1E-19 2.4E-24 200.8 34.3 268 362-664 3-281 (300)
144 KOG1538 Uncharacterized conser 99.9 5.2E-20 1.1E-24 195.9 28.2 468 456-1088 14-519 (1081)
145 KOG0650 WD40 repeat nucleolar 99.9 3.9E-20 8.5E-25 195.3 26.8 316 448-944 394-732 (733)
146 KOG0321 WD40 repeat-containing 99.9 2.3E-20 5E-25 198.8 24.3 288 780-1096 65-394 (720)
147 KOG0650 WD40 repeat nucleolar 99.9 4E-20 8.7E-25 195.2 24.6 325 401-859 392-732 (733)
148 KOG0321 WD40 repeat-containing 99.9 2.4E-20 5.2E-25 198.7 23.1 288 353-665 55-394 (720)
149 KOG0269 WD40 repeat-containing 99.9 2.5E-21 5.4E-26 210.7 15.8 247 349-620 89-342 (839)
150 KOG1009 Chromatin assembly com 99.9 1.3E-19 2.7E-24 183.4 23.7 302 346-664 12-374 (434)
151 KOG2445 Nuclear pore complex c 99.9 3.3E-19 7.2E-24 173.6 25.6 264 345-630 11-333 (361)
152 KOG2445 Nuclear pore complex c 99.9 2.8E-19 6.1E-24 174.1 24.9 255 404-662 8-318 (361)
153 KOG0270 WD40 repeat-containing 99.9 1.3E-19 2.8E-24 185.5 23.6 253 412-670 176-457 (463)
154 KOG0267 Microtubule severing p 99.8 4.4E-21 9.6E-26 207.0 10.5 233 346-610 27-260 (825)
155 KOG0269 WD40 repeat-containing 99.8 1.1E-19 2.3E-24 198.2 19.7 297 346-664 38-342 (839)
156 KOG1034 Transcriptional repres 99.8 1.2E-18 2.6E-23 171.3 22.4 289 345-661 36-382 (385)
157 KOG1034 Transcriptional repres 99.8 3.8E-18 8.2E-23 167.8 25.7 300 764-1092 35-382 (385)
158 KOG4328 WD40 protein [Function 99.8 1.6E-18 3.4E-23 178.0 23.4 207 449-661 181-398 (498)
159 KOG0307 Vesicle coat complex C 99.8 8.1E-20 1.8E-24 208.8 15.4 251 409-664 64-329 (1049)
160 COG2319 FOG: WD40 repeat [Gene 99.8 3.6E-16 7.7E-21 183.3 46.8 371 405-948 61-443 (466)
161 KOG4378 Nuclear protein COP1 [ 99.8 1.6E-18 3.4E-23 178.9 22.8 216 838-1073 84-304 (673)
162 COG2319 FOG: WD40 repeat [Gene 99.8 8.7E-16 1.9E-20 180.0 49.8 289 343-664 61-361 (466)
163 KOG4497 Uncharacterized conser 99.8 3.6E-18 7.8E-23 167.5 23.9 407 414-940 13-425 (447)
164 KOG0302 Ribosome Assembly prot 99.8 1.1E-18 2.5E-23 174.4 20.7 250 831-1092 149-437 (440)
165 KOG2919 Guanine nucleotide-bin 99.8 3.7E-18 8E-23 167.3 22.8 287 350-653 52-361 (406)
166 KOG4378 Nuclear protein COP1 [ 99.8 3E-18 6.5E-23 176.9 22.7 271 370-669 12-287 (673)
167 KOG0302 Ribosome Assembly prot 99.8 2.9E-18 6.4E-23 171.6 21.3 264 339-615 143-435 (440)
168 KOG1524 WD40 repeat-containing 99.8 8.3E-17 1.8E-21 168.0 32.4 492 407-1041 12-525 (737)
169 KOG2919 Guanine nucleotide-bin 99.8 2.5E-17 5.5E-22 161.5 25.1 228 777-1030 121-361 (406)
170 KOG0270 WD40 repeat-containing 99.8 3.6E-18 7.9E-23 174.9 17.8 210 345-581 241-455 (463)
171 KOG0303 Actin-binding protein 99.8 3.1E-17 6.6E-22 165.2 23.0 233 404-643 76-320 (472)
172 KOG0303 Actin-binding protein 99.8 2.2E-17 4.8E-22 166.3 21.9 247 411-665 29-297 (472)
173 KOG0307 Vesicle coat complex C 99.8 2.3E-18 5E-23 197.0 15.6 281 321-621 34-330 (1049)
174 KOG0644 Uncharacterized conser 99.8 1.2E-18 2.7E-23 190.7 12.5 280 341-664 184-470 (1113)
175 KOG1912 WD40 repeat protein [G 99.8 6.1E-16 1.3E-20 168.5 32.8 634 346-1048 14-750 (1062)
176 KOG1912 WD40 repeat protein [G 99.8 5E-16 1.1E-20 169.2 31.6 542 410-1042 16-659 (1062)
177 KOG1524 WD40 repeat-containing 99.8 1.8E-16 3.9E-21 165.5 26.9 271 345-659 12-283 (737)
178 KOG1009 Chromatin assembly com 99.8 1.2E-16 2.5E-21 162.1 24.6 297 767-1094 13-373 (434)
179 KOG0642 Cell-cycle nuclear pro 99.8 1.2E-17 2.6E-22 176.4 15.3 265 345-629 292-572 (577)
180 KOG0642 Cell-cycle nuclear pro 99.8 7.3E-18 1.6E-22 178.0 13.6 251 404-664 289-563 (577)
181 KOG4227 WD40 repeat protein [G 99.7 1.7E-16 3.8E-21 158.9 21.2 294 343-661 52-386 (609)
182 KOG1310 WD40 repeat protein [G 99.7 1.4E-16 2.9E-21 166.9 19.8 236 404-668 45-309 (758)
183 KOG1007 WD repeat protein TSSC 99.7 4.4E-16 9.6E-21 150.4 21.1 183 836-1039 173-361 (370)
184 KOG1188 WD40 repeat protein [G 99.7 1.2E-16 2.6E-21 158.5 17.5 292 470-796 42-345 (376)
185 KOG0649 WD40 repeat protein [G 99.7 3.3E-15 7.2E-20 140.8 25.9 283 769-1091 12-314 (325)
186 KOG0322 G-protein beta subunit 99.7 9.6E-17 2.1E-21 153.1 15.5 283 345-661 12-322 (323)
187 KOG1334 WD40 repeat protein [G 99.7 4.4E-17 9.4E-22 168.7 14.3 292 345-663 140-467 (559)
188 KOG1188 WD40 repeat protein [G 99.7 5.4E-16 1.2E-20 153.9 19.8 275 362-664 42-348 (376)
189 KOG0322 G-protein beta subunit 99.7 3.6E-16 7.8E-21 149.3 17.5 307 534-946 7-322 (323)
190 PRK11028 6-phosphogluconolacto 99.7 2.5E-14 5.4E-19 159.0 35.0 146 514-663 5-157 (330)
191 PRK11028 6-phosphogluconolacto 99.7 1.1E-14 2.4E-19 161.9 32.1 196 837-1039 83-304 (330)
192 KOG1007 WD repeat protein TSSC 99.7 6.6E-16 1.4E-20 149.3 18.9 228 853-1093 39-289 (370)
193 KOG4497 Uncharacterized conser 99.7 3.5E-15 7.6E-20 146.8 22.4 404 352-897 13-424 (447)
194 KOG0649 WD40 repeat protein [G 99.7 1.4E-14 3E-19 136.7 25.3 280 349-659 12-313 (325)
195 KOG1517 Guanine nucleotide bin 99.7 8E-15 1.7E-19 165.4 26.4 201 840-1042 1172-1384(1387)
196 KOG2110 Uncharacterized conser 99.7 1.2E-13 2.6E-18 139.1 31.8 241 409-664 5-250 (391)
197 KOG1587 Cytoplasmic dynein int 99.7 6.6E-15 1.4E-19 165.4 25.6 275 324-619 220-517 (555)
198 KOG0290 Conserved WD40 repeat- 99.7 1.7E-14 3.7E-19 139.8 23.7 288 341-658 38-361 (364)
199 KOG2110 Uncharacterized conser 99.7 3.4E-14 7.4E-19 142.9 26.6 242 832-1096 4-251 (391)
200 PRK01742 tolB translocation pr 99.7 8.1E-15 1.8E-19 167.8 24.8 235 369-643 183-426 (429)
201 KOG1587 Cytoplasmic dynein int 99.7 4.5E-14 9.8E-19 158.8 28.3 250 407-664 240-518 (555)
202 KOG4227 WD40 repeat protein [G 99.7 3E-14 6.4E-19 143.1 23.5 300 536-948 51-388 (609)
203 KOG1517 Guanine nucleotide bin 99.7 2E-14 4.3E-19 162.3 24.8 290 349-664 1066-1383(1387)
204 KOG0771 Prolactin regulatory e 99.6 2.6E-15 5.6E-20 154.0 16.1 200 878-1094 148-355 (398)
205 KOG1240 Protein kinase contain 99.6 6.4E-14 1.4E-18 161.0 29.0 256 404-665 1043-1337(1431)
206 KOG0974 WD-repeat protein WDR6 99.6 2.2E-12 4.8E-17 147.2 41.1 151 353-531 139-290 (967)
207 KOG0290 Conserved WD40 repeat- 99.6 1.5E-14 3.3E-19 140.2 20.3 250 344-614 93-361 (364)
208 KOG1523 Actin-related protein 99.6 2E-14 4.3E-19 141.7 20.2 237 346-609 9-269 (361)
209 COG4946 Uncharacterized protei 99.6 2.9E-11 6.2E-16 125.4 43.9 424 350-937 39-508 (668)
210 KOG0644 Uncharacterized conser 99.6 6.4E-16 1.4E-20 169.7 10.7 290 577-950 180-471 (1113)
211 PF02239 Cytochrom_D1: Cytochr 99.6 7.3E-13 1.6E-17 145.8 33.6 334 468-956 6-356 (369)
212 PF02239 Cytochrom_D1: Cytochr 99.6 9.4E-13 2E-17 145.0 34.2 321 512-1003 6-356 (369)
213 KOG2111 Uncharacterized conser 99.6 1.9E-12 4E-17 128.0 30.8 239 411-664 7-258 (346)
214 KOG1240 Protein kinase contain 99.6 6.3E-14 1.4E-18 161.1 23.0 177 483-664 1034-1227(1431)
215 KOG0771 Prolactin regulatory e 99.6 1.4E-14 3E-19 148.8 15.2 199 837-1040 148-355 (398)
216 KOG1334 WD40 repeat protein [G 99.6 3.5E-14 7.6E-19 147.5 17.1 295 404-748 137-467 (559)
217 KOG2321 WD40 repeat protein [G 99.6 3.2E-13 7E-18 143.0 22.7 287 339-662 43-343 (703)
218 PRK01742 tolB translocation pr 99.6 1.8E-13 3.8E-18 156.8 22.2 219 343-599 199-426 (429)
219 KOG2041 WD40 repeat protein [G 99.6 9.3E-12 2E-16 134.9 32.9 573 346-1040 13-620 (1189)
220 PRK03629 tolB translocation pr 99.6 1.9E-12 4.1E-17 147.7 29.4 238 370-642 179-427 (429)
221 KOG1832 HIV-1 Vpr-binding prot 99.6 1.2E-14 2.7E-19 160.3 10.7 338 170-650 1014-1377(1516)
222 KOG2139 WD40 repeat protein [G 99.6 2.7E-12 5.8E-17 128.6 26.2 285 347-661 98-430 (445)
223 PF04762 IKI3: IKI3 family; I 99.6 6.9E-09 1.5E-13 127.1 61.4 515 407-1093 73-639 (928)
224 KOG2139 WD40 repeat protein [G 99.6 2.4E-12 5.3E-17 129.0 25.8 204 834-1039 196-431 (445)
225 KOG1523 Actin-related protein 99.5 8.6E-13 1.9E-17 130.3 21.9 253 832-1103 9-287 (361)
226 PF04762 IKI3: IKI3 family; I 99.5 1E-08 2.2E-13 125.6 61.1 504 346-1039 74-639 (928)
227 KOG0974 WD-repeat protein WDR6 99.5 8.4E-11 1.8E-15 134.6 38.7 199 349-577 89-290 (967)
228 COG4946 Uncharacterized protei 99.5 2.5E-09 5.4E-14 111.3 44.6 524 335-1041 66-656 (668)
229 KOG1310 WD40 repeat protein [G 99.5 2.2E-13 4.8E-18 143.2 15.2 240 344-627 47-312 (758)
230 PRK02889 tolB translocation pr 99.5 3.2E-12 6.8E-17 146.2 26.0 224 405-642 191-424 (427)
231 PRK05137 tolB translocation pr 99.5 6.4E-12 1.4E-16 144.6 28.7 237 370-642 182-432 (435)
232 KOG2659 LisH motif-containing 99.5 1.7E-13 3.7E-18 131.5 12.5 173 2-184 23-206 (228)
233 KOG2394 WD40 protein DMR-N9 [G 99.5 1.5E-12 3.4E-17 137.0 20.4 118 833-951 290-456 (636)
234 KOG1272 WD40-repeat-containing 99.5 1.1E-13 2.3E-18 143.0 11.3 276 347-661 129-408 (545)
235 KOG2111 Uncharacterized conser 99.5 1.2E-11 2.6E-16 122.4 24.3 240 835-1096 7-259 (346)
236 PRK03629 tolB translocation pr 99.5 4.4E-12 9.6E-17 144.7 25.0 223 343-598 194-427 (429)
237 KOG1272 WD40-repeat-containing 99.5 1.1E-13 2.4E-18 142.9 10.5 231 410-660 130-360 (545)
238 PRK04922 tolB translocation pr 99.5 3.6E-12 7.9E-17 146.3 24.2 238 370-642 184-432 (433)
239 KOG2321 WD40 repeat protein [G 99.5 2.2E-12 4.7E-17 136.9 19.5 262 766-1041 50-345 (703)
240 PRK02889 tolB translocation pr 99.5 8.2E-12 1.8E-16 142.8 25.1 225 342-598 190-424 (427)
241 KOG2394 WD40 protein DMR-N9 [G 99.5 3.4E-12 7.4E-17 134.5 19.8 252 349-641 125-383 (636)
242 PRK04922 tolB translocation pr 99.5 7E-12 1.5E-16 144.0 23.5 226 340-598 196-432 (433)
243 COG5354 Uncharacterized protei 99.4 5.5E-10 1.2E-14 117.7 34.0 345 524-1043 15-399 (561)
244 KOG3881 Uncharacterized conser 99.4 1.2E-11 2.6E-16 125.8 20.8 272 346-642 54-341 (412)
245 PRK05137 tolB translocation pr 99.4 2E-11 4.2E-16 140.6 25.1 225 341-598 195-432 (435)
246 KOG1409 Uncharacterized conser 99.4 1.3E-11 2.9E-16 123.1 19.5 341 578-1040 15-395 (404)
247 KOG2315 Predicted translation 99.4 8.9E-11 1.9E-15 125.3 26.5 278 347-664 34-392 (566)
248 PF10282 Lactonase: Lactonase, 99.4 2.3E-09 4.9E-14 119.0 39.1 206 835-1044 88-329 (345)
249 KOG2041 WD40 repeat protein [G 99.4 1.1E-09 2.4E-14 119.2 34.3 522 343-993 66-618 (1189)
250 KOG3881 Uncharacterized conser 99.4 5.1E-11 1.1E-15 121.3 21.2 245 408-665 54-323 (412)
251 COG2706 3-carboxymuconate cycl 99.4 1.4E-09 3.1E-14 110.8 31.1 281 738-1044 15-328 (346)
252 KOG2315 Predicted translation 99.4 4.7E-10 1E-14 119.9 28.7 353 522-948 12-391 (566)
253 PF10282 Lactonase: Lactonase, 99.4 3.7E-09 8.1E-14 117.3 37.5 292 556-948 2-323 (345)
254 KOG2314 Translation initiation 99.4 9.5E-10 2.1E-14 116.7 29.4 327 544-1041 213-575 (698)
255 TIGR02658 TTQ_MADH_Hv methylam 99.3 3.3E-09 7.1E-14 113.6 33.5 202 837-1047 108-338 (352)
256 PRK04792 tolB translocation pr 99.3 4.1E-10 8.9E-15 129.1 27.6 223 405-642 213-446 (448)
257 PRK00178 tolB translocation pr 99.3 5.5E-10 1.2E-14 129.1 28.9 237 371-642 180-427 (430)
258 PRK01029 tolB translocation pr 99.3 3.6E-10 7.8E-15 128.4 26.3 228 345-599 182-425 (428)
259 PF08662 eIF2A: Eukaryotic tra 99.3 3.7E-11 7.9E-16 119.9 15.2 121 345-494 57-187 (194)
260 KOG1354 Serine/threonine prote 99.3 2.4E-10 5.2E-15 114.1 20.5 262 346-621 24-362 (433)
261 COG5354 Uncharacterized protei 99.3 6.5E-10 1.4E-14 117.2 24.7 286 347-668 32-354 (561)
262 TIGR02800 propeller_TolB tol-p 99.3 5.7E-10 1.2E-14 129.1 26.6 210 405-627 185-405 (417)
263 PRK04792 tolB translocation pr 99.3 2.9E-10 6.3E-15 130.3 23.6 224 343-598 213-446 (448)
264 PF08662 eIF2A: Eukaryotic tra 99.3 3.1E-10 6.8E-15 113.3 20.3 162 413-582 9-185 (194)
265 KOG1354 Serine/threonine prote 99.3 1.4E-09 3E-14 108.8 24.2 192 454-664 25-246 (433)
266 PRK01029 tolB translocation pr 99.3 1.8E-09 4E-14 122.6 28.9 241 370-643 165-425 (428)
267 TIGR02800 propeller_TolB tol-p 99.3 4.7E-10 1E-14 129.7 24.3 212 341-584 183-405 (417)
268 TIGR02658 TTQ_MADH_Hv methylam 99.3 8.5E-09 1.8E-13 110.5 31.3 261 370-664 27-332 (352)
269 PRK00178 tolB translocation pr 99.2 8.9E-10 1.9E-14 127.3 24.5 226 340-598 191-427 (430)
270 COG2706 3-carboxymuconate cycl 99.2 1.5E-08 3.2E-13 103.6 29.5 253 831-1097 37-325 (346)
271 KOG1409 Uncharacterized conser 99.2 4.7E-10 1E-14 112.2 17.7 350 449-906 19-395 (404)
272 KOG2314 Translation initiation 99.2 6.2E-09 1.4E-13 110.7 24.9 287 346-664 249-575 (698)
273 KOG4547 WD40 repeat-containing 99.1 5.5E-09 1.2E-13 112.9 22.4 193 418-619 2-221 (541)
274 KOG4547 WD40 repeat-containing 99.1 1.1E-08 2.3E-13 110.7 23.8 192 357-575 3-220 (541)
275 TIGR03300 assembly_YfgL outer 99.1 3.4E-08 7.4E-13 112.1 29.8 305 512-944 66-376 (377)
276 KOG1064 RAVE (regulator of V-A 99.1 7.6E-10 1.6E-14 132.6 14.3 202 343-587 2204-2410(2439)
277 KOG4190 Uncharacterized conser 99.1 1.1E-09 2.4E-14 115.6 11.9 241 404-661 730-987 (1034)
278 KOG3617 WD40 and TPR repeat-co 99.0 4.9E-08 1.1E-12 108.7 23.8 190 351-580 19-224 (1416)
279 PLN02919 haloacid dehalogenase 99.0 2E-07 4.4E-12 116.9 31.6 257 837-1097 571-892 (1057)
280 KOG0280 Uncharacterized conser 99.0 9.3E-08 2E-12 94.2 20.9 192 346-554 68-266 (339)
281 KOG0309 Conserved WD40 repeat- 99.0 5.4E-09 1.2E-13 114.6 13.7 283 313-619 23-340 (1081)
282 KOG1064 RAVE (regulator of V-A 99.0 2.4E-09 5.2E-14 128.4 11.9 202 405-629 2204-2409(2439)
283 KOG4190 Uncharacterized conser 99.0 5.1E-09 1.1E-13 110.6 12.2 288 344-658 732-1032(1034)
284 KOG0280 Uncharacterized conser 98.9 1.1E-07 2.4E-12 93.6 20.2 201 836-1042 124-336 (339)
285 PLN02919 haloacid dehalogenase 98.9 7.4E-07 1.6E-11 111.9 31.9 257 351-622 571-892 (1057)
286 TIGR03300 assembly_YfgL outer 98.9 4.2E-07 9E-12 103.2 26.5 259 358-659 104-376 (377)
287 PRK04043 tolB translocation pr 98.9 5.3E-07 1.2E-11 101.7 26.3 197 348-576 188-401 (419)
288 PF15492 Nbas_N: Neuroblastoma 98.8 2.1E-06 4.6E-11 85.4 25.4 210 838-1049 2-269 (282)
289 KOG3914 WD repeat protein WDR4 98.8 3.7E-08 8.1E-13 101.6 12.8 167 349-538 64-232 (390)
290 KOG1897 Damage-specific DNA bi 98.8 0.00084 1.8E-08 78.1 54.6 622 353-1095 263-944 (1096)
291 PF13360 PQQ_2: PQQ-like domai 98.8 1.8E-06 3.8E-11 91.2 25.7 226 853-1100 2-237 (238)
292 PF07433 DUF1513: Protein of u 98.8 3.2E-06 6.9E-11 87.3 25.9 187 838-1034 55-280 (305)
293 KOG1832 HIV-1 Vpr-binding prot 98.8 4.1E-09 8.9E-14 117.6 5.3 217 404-650 1096-1319(1516)
294 PF07433 DUF1513: Protein of u 98.8 5.1E-06 1.1E-10 85.8 26.6 209 835-1048 6-256 (305)
295 PF15492 Nbas_N: Neuroblastoma 98.8 8.1E-06 1.8E-10 81.4 26.7 231 415-664 3-261 (282)
296 PRK11138 outer membrane biogen 98.8 8.9E-06 1.9E-10 92.7 31.1 308 512-946 70-393 (394)
297 KOG4532 WD40-like repeat conta 98.8 2.9E-06 6.3E-11 82.6 22.3 227 362-619 86-332 (344)
298 KOG4714 Nucleoporin [Nuclear s 98.7 2.8E-07 6.1E-12 89.2 14.2 208 349-576 38-255 (319)
299 KOG0309 Conserved WD40 repeat- 98.7 2.6E-07 5.7E-12 101.8 14.8 293 344-664 21-341 (1081)
300 PRK04043 tolB translocation pr 98.7 7.2E-06 1.6E-10 92.7 27.0 197 411-620 189-402 (419)
301 PF08450 SGL: SMP-30/Gluconola 98.7 5.4E-05 1.2E-09 80.0 31.1 183 836-1028 42-244 (246)
302 KOG4532 WD40-like repeat conta 98.7 3.6E-06 7.8E-11 82.0 19.5 176 363-559 131-320 (344)
303 PF08450 SGL: SMP-30/Gluconola 98.6 3.9E-05 8.5E-10 81.1 29.5 219 837-1081 3-244 (246)
304 KOG4714 Nucleoporin [Nuclear s 98.6 1.7E-06 3.6E-11 84.0 16.8 95 854-948 159-255 (319)
305 PRK11138 outer membrane biogen 98.6 2.5E-05 5.5E-10 89.0 30.0 187 470-664 71-276 (394)
306 KOG1645 RING-finger-containing 98.6 3.8E-06 8.3E-11 86.7 20.2 248 404-662 188-461 (463)
307 COG5170 CDC55 Serine/threonine 98.6 1.9E-06 4.2E-11 85.3 16.3 248 409-674 26-321 (460)
308 COG5170 CDC55 Serine/threonine 98.6 1.9E-06 4.2E-11 85.4 15.9 255 346-617 25-366 (460)
309 KOG3617 WD40 and TPR repeat-co 98.6 7.1E-06 1.5E-10 92.1 22.0 114 544-662 18-131 (1416)
310 PF06433 Me-amine-dh_H: Methyl 98.6 0.00017 3.8E-09 75.5 30.8 203 838-1048 99-329 (342)
311 KOG0882 Cyclophilin-related pe 98.6 3.8E-06 8.3E-11 87.8 18.5 211 452-672 7-240 (558)
312 KOG3914 WD repeat protein WDR4 98.6 8.6E-07 1.9E-11 91.8 13.7 160 920-1098 65-228 (390)
313 KOG4649 PQQ (pyrrolo-quinoline 98.6 0.00035 7.6E-09 68.3 30.4 137 512-657 24-160 (354)
314 KOG0882 Cyclophilin-related pe 98.6 1.8E-06 3.8E-11 90.3 15.6 257 344-627 6-314 (558)
315 KOG0396 Uncharacterized conser 98.5 6.2E-07 1.4E-11 91.7 11.6 119 5-125 115-242 (389)
316 PF13360 PQQ_2: PQQ-like domai 98.5 1.9E-05 4.2E-10 83.3 23.6 192 844-1044 35-235 (238)
317 KOG1920 IkappaB kinase complex 98.5 1.6E-05 3.4E-10 93.9 23.3 275 767-1093 68-365 (1265)
318 KOG4649 PQQ (pyrrolo-quinoline 98.4 0.00035 7.5E-09 68.4 26.7 115 354-494 17-132 (354)
319 KOG1275 PAB-dependent poly(A) 98.4 5.2E-06 1.1E-10 94.4 16.1 179 844-1037 146-340 (1118)
320 PF10607 CLTH: CTLH/CRA C-term 98.4 8.6E-07 1.9E-11 84.5 8.6 135 38-183 5-142 (145)
321 PF00400 WD40: WD domain, G-be 98.4 8.8E-07 1.9E-11 62.2 6.4 39 907-945 1-39 (39)
322 PF00930 DPPIV_N: Dipeptidyl p 98.4 0.00011 2.4E-09 82.0 25.9 265 356-652 1-347 (353)
323 KOG2695 WD40 repeat protein [G 98.4 1.1E-06 2.4E-11 88.7 8.4 166 351-540 215-387 (425)
324 PF06433 Me-amine-dh_H: Methyl 98.4 0.00022 4.8E-09 74.8 25.0 137 521-664 17-167 (342)
325 PRK02888 nitrous-oxide reducta 98.3 0.00015 3.3E-09 82.2 25.5 103 833-937 320-451 (635)
326 KOG2695 WD40 repeat protein [G 98.3 1.4E-06 3E-11 87.9 8.1 165 458-630 215-388 (425)
327 KOG1645 RING-finger-containing 98.3 1.7E-05 3.6E-10 82.2 15.8 247 830-1094 190-462 (463)
328 KOG1920 IkappaB kinase complex 98.3 0.00016 3.4E-09 85.8 25.8 279 347-661 68-364 (1265)
329 KOG3621 WD40 repeat-containing 98.3 0.00014 2.9E-09 81.4 23.9 288 346-670 32-361 (726)
330 PRK02888 nitrous-oxide reducta 98.3 3.9E-05 8.5E-10 86.8 19.8 244 843-1106 139-423 (635)
331 KOG1897 Damage-specific DNA bi 98.3 0.02 4.2E-07 67.3 52.7 637 345-1036 304-1001(1096)
332 PF00930 DPPIV_N: Dipeptidyl p 98.3 0.00013 2.8E-09 81.5 22.7 298 597-982 1-344 (353)
333 KOG2114 Vacuolar assembly/sort 98.2 0.00032 6.9E-09 80.2 22.6 203 839-1048 29-252 (933)
334 PF14583 Pectate_lyase22: Olig 98.1 0.0077 1.7E-07 64.8 31.3 279 354-661 42-380 (386)
335 PF00400 WD40: WD domain, G-be 98.1 9.8E-06 2.1E-10 56.8 6.8 39 864-903 1-39 (39)
336 KOG2066 Vacuolar assembly/sort 98.1 0.00011 2.5E-09 83.1 17.2 189 875-1093 40-233 (846)
337 KOG2114 Vacuolar assembly/sort 98.1 0.00066 1.4E-08 77.7 22.7 201 354-584 30-252 (933)
338 cd00216 PQQ_DH Dehydrogenases 98.1 0.0018 3.8E-08 75.7 27.6 240 846-1103 111-434 (488)
339 PF08513 LisH: LisH; InterPro 98.1 5.5E-06 1.2E-10 51.2 3.7 27 6-32 1-27 (27)
340 KOG1275 PAB-dependent poly(A) 98.1 7.8E-05 1.7E-09 85.2 15.4 181 420-616 146-340 (1118)
341 cd00216 PQQ_DH Dehydrogenases 98.0 0.0045 9.9E-08 72.3 30.5 110 512-628 62-193 (488)
342 PF14583 Pectate_lyase22: Olig 98.0 0.0025 5.4E-08 68.4 25.4 285 771-1092 39-380 (386)
343 smart00668 CTLH C-terminal to 98.0 4.3E-06 9.4E-11 64.9 3.5 53 37-90 4-56 (58)
344 PF02897 Peptidase_S9_N: Proly 98.0 0.0059 1.3E-07 70.4 30.7 251 349-623 125-409 (414)
345 KOG2066 Vacuolar assembly/sort 98.0 0.00024 5.3E-09 80.6 17.3 182 346-575 38-233 (846)
346 PF11768 DUF3312: Protein of u 98.0 0.00034 7.4E-09 77.4 18.1 134 328-484 186-327 (545)
347 PF04053 Coatomer_WDAD: Coatom 98.0 0.00076 1.7E-08 75.9 21.3 228 767-1043 32-266 (443)
348 PF11768 DUF3312: Protein of u 97.9 0.0036 7.8E-08 69.6 24.5 114 833-949 205-331 (545)
349 PF04053 Coatomer_WDAD: Coatom 97.9 0.0018 3.9E-08 73.0 23.1 225 405-664 28-264 (443)
350 PF08596 Lgl_C: Lethal giant l 97.9 0.0061 1.3E-07 67.9 26.1 251 349-606 3-324 (395)
351 smart00667 LisH Lissencephaly 97.9 2.1E-05 4.5E-10 53.1 4.1 32 4-35 2-33 (34)
352 PF04841 Vps16_N: Vps16, N-ter 97.8 0.0064 1.4E-07 68.8 25.1 199 839-1049 34-256 (410)
353 PF06977 SdiA-regulated: SdiA- 97.8 0.0061 1.3E-07 62.7 21.8 191 346-559 20-239 (248)
354 KOG3621 WD40 repeat-containing 97.8 0.00059 1.3E-08 76.5 15.3 150 877-1028 36-188 (726)
355 KOG1008 Uncharacterized conser 97.8 1.2E-05 2.6E-10 88.2 2.2 205 346-575 55-275 (783)
356 PF04841 Vps16_N: Vps16, N-ter 97.7 0.014 3.1E-07 66.0 26.9 186 834-1037 81-285 (410)
357 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.7 0.084 1.8E-06 61.9 33.7 61 854-916 441-501 (527)
358 COG0823 TolB Periplasmic compo 97.7 0.0023 5E-08 72.0 19.1 196 338-561 182-389 (425)
359 PF08596 Lgl_C: Lethal giant l 97.7 0.019 4.2E-07 63.9 26.0 240 411-660 3-333 (395)
360 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.6 0.094 2E-06 61.5 32.5 148 898-1049 272-500 (527)
361 COG3391 Uncharacterized conser 97.6 0.016 3.4E-07 65.3 25.3 211 834-1051 74-295 (381)
362 PF06977 SdiA-regulated: SdiA- 97.6 0.025 5.4E-07 58.3 24.3 202 831-1036 19-247 (248)
363 PF08553 VID27: VID27 cytoplas 97.5 0.0067 1.5E-07 72.1 21.0 149 886-1039 492-647 (794)
364 COG0823 TolB Periplasmic compo 97.5 0.0074 1.6E-07 67.9 19.9 191 406-607 189-388 (425)
365 KOG2817 Predicted E3 ubiquitin 97.5 0.00076 1.6E-08 70.8 10.6 111 6-117 117-239 (394)
366 COG3391 Uncharacterized conser 97.4 0.14 2.9E-06 57.8 29.4 258 344-629 27-294 (381)
367 PRK13616 lipoprotein LpqB; Pro 97.4 0.0075 1.6E-07 71.0 19.2 189 834-1034 350-563 (591)
368 COG3386 Gluconolactonase [Carb 97.4 0.025 5.4E-07 60.6 21.4 185 837-1028 69-274 (307)
369 PF00780 CNH: CNH domain; Int 97.4 0.09 2E-06 56.6 25.9 233 777-1048 5-264 (275)
370 KOG1008 Uncharacterized conser 97.3 0.00012 2.6E-09 80.6 3.1 207 876-1094 58-276 (783)
371 KOG2395 Protein involved in va 97.3 0.0071 1.5E-07 65.8 16.0 147 888-1039 347-500 (644)
372 COG3490 Uncharacterized protei 97.3 0.059 1.3E-06 54.2 20.7 241 346-617 66-347 (366)
373 COG3386 Gluconolactonase [Carb 97.3 0.08 1.7E-06 56.8 23.7 223 353-607 30-274 (307)
374 COG3490 Uncharacterized protei 97.3 0.038 8.2E-07 55.5 19.3 238 836-1092 70-347 (366)
375 PF02897 Peptidase_S9_N: Proly 97.3 0.16 3.4E-06 58.5 28.0 243 411-664 125-406 (414)
376 PF08553 VID27: VID27 cytoplas 97.3 0.076 1.7E-06 63.5 25.1 103 552-660 492-604 (794)
377 PF00780 CNH: CNH domain; Int 97.2 0.15 3.1E-06 55.0 25.3 229 842-1097 4-259 (275)
378 PF03178 CPSF_A: CPSF A subuni 97.2 0.098 2.1E-06 57.7 23.9 176 371-575 3-202 (321)
379 PF14727 PHTB1_N: PTHB1 N-term 97.1 0.66 1.4E-05 51.8 31.4 286 778-1100 36-367 (418)
380 PF05096 Glu_cyclase_2: Glutam 97.1 0.35 7.7E-06 49.6 24.9 189 833-1028 44-249 (264)
381 PRK13616 lipoprotein LpqB; Pro 97.1 0.093 2E-06 62.0 23.6 201 875-1104 350-579 (591)
382 PHA02713 hypothetical protein; 97.0 0.048 1E-06 64.7 19.9 227 855-1108 273-546 (557)
383 PF14870 PSII_BNR: Photosynthe 96.9 0.76 1.7E-05 49.0 28.0 193 838-1036 108-301 (302)
384 PF14655 RAB3GAP2_N: Rab3 GTPa 96.9 0.39 8.5E-06 53.4 25.1 83 1009-1098 307-403 (415)
385 PF14655 RAB3GAP2_N: Rab3 GTPa 96.9 0.53 1.2E-05 52.4 25.9 85 541-629 307-409 (415)
386 PF05694 SBP56: 56kDa selenium 96.9 0.45 9.7E-06 52.0 24.1 237 778-1028 86-392 (461)
387 smart00320 WD40 WD40 repeats. 96.8 0.003 6.6E-08 43.4 5.6 39 907-945 2-40 (40)
388 KOG4640 Anaphase-promoting com 96.8 0.0052 1.1E-07 68.3 9.3 94 347-463 20-114 (665)
389 KOG4640 Anaphase-promoting com 96.8 0.0056 1.2E-07 68.1 9.4 93 875-974 21-114 (665)
390 PF03178 CPSF_A: CPSF A subuni 96.8 0.16 3.4E-06 56.1 21.0 176 479-663 3-203 (321)
391 PF07995 GSDH: Glucose / Sorbo 96.7 1.3 2.8E-05 48.8 27.6 112 349-477 3-134 (331)
392 PF10647 Gmad1: Lipoprotein Lp 96.6 0.45 9.7E-06 50.0 22.1 145 834-983 24-183 (253)
393 PRK10115 protease 2; Provision 96.5 2.7 5.9E-05 51.3 31.1 243 410-664 127-396 (686)
394 PF14783 BBS2_Mid: Ciliary BBS 96.4 0.17 3.7E-06 44.0 13.9 102 350-481 2-109 (111)
395 smart00320 WD40 WD40 repeats. 96.4 0.0077 1.7E-07 41.2 5.2 34 404-437 7-40 (40)
396 PF10647 Gmad1: Lipoprotein Lp 96.4 0.22 4.9E-06 52.3 18.0 150 876-1031 25-187 (253)
397 PF14727 PHTB1_N: PTHB1 N-term 96.3 2.5 5.4E-05 47.4 32.7 277 357-665 34-363 (418)
398 KOG4499 Ca2+-binding protein R 96.2 0.75 1.6E-05 45.2 18.4 98 772-884 162-263 (310)
399 KOG4441 Proteins containing BT 96.2 0.23 5E-06 58.8 18.5 235 843-1104 283-555 (571)
400 PF05694 SBP56: 56kDa selenium 96.1 1.1 2.4E-05 49.1 21.2 141 510-650 86-264 (461)
401 TIGR03074 PQQ_membr_DH membran 96.0 1.2 2.6E-05 54.3 23.8 245 844-1108 194-493 (764)
402 KOG1898 Splicing factor 3b, su 96.0 5.6 0.00012 48.2 37.1 108 970-1092 938-1047(1205)
403 PF14870 PSII_BNR: Photosynthe 95.9 3 6.5E-05 44.6 29.8 153 832-991 143-301 (302)
404 PHA02713 hypothetical protein; 95.9 0.35 7.5E-06 57.5 18.6 187 843-1044 302-538 (557)
405 KOG2395 Protein involved in va 95.9 0.18 3.9E-06 55.4 14.2 139 513-661 348-499 (644)
406 PF05096 Glu_cyclase_2: Glutam 95.9 2.3 4.9E-05 43.9 21.3 205 865-1082 34-250 (264)
407 PF14783 BBS2_Mid: Ciliary BBS 95.8 0.34 7.3E-06 42.2 12.9 104 500-614 2-110 (111)
408 PRK13684 Ycf48-like protein; P 95.8 1.9 4.1E-05 47.6 22.7 157 874-1037 172-329 (334)
409 PF07995 GSDH: Glucose / Sorbo 95.8 3 6.6E-05 45.9 24.2 239 835-1087 3-329 (331)
410 KOG4499 Ca2+-binding protein R 95.8 1.5 3.2E-05 43.2 18.5 137 454-599 108-264 (310)
411 PRK10115 protease 2; Provision 95.8 7.3 0.00016 47.7 30.0 246 768-1042 127-397 (686)
412 COG3204 Uncharacterized protei 95.8 0.78 1.7E-05 47.1 17.2 178 913-1096 81-266 (316)
413 KOG2079 Vacuolar assembly/sort 95.7 0.18 3.8E-06 60.3 14.5 103 420-528 98-202 (1206)
414 KOG2444 WD40 repeat protein [G 95.5 0.04 8.6E-07 53.9 7.0 104 845-948 70-178 (238)
415 PF12894 Apc4_WD40: Anaphase-p 95.4 0.053 1.1E-06 39.1 5.7 33 409-442 11-43 (47)
416 PF12894 Apc4_WD40: Anaphase-p 95.4 0.06 1.3E-06 38.8 5.9 34 1009-1043 11-44 (47)
417 KOG4441 Proteins containing BT 95.4 1.5 3.2E-05 52.1 21.2 232 419-663 283-547 (571)
418 KOG2079 Vacuolar assembly/sort 95.4 0.13 2.9E-06 61.3 11.8 102 844-948 98-204 (1206)
419 PF10168 Nup88: Nuclear pore c 94.9 9.6 0.00021 46.3 26.0 94 832-948 83-180 (717)
420 KOG3630 Nuclear pore complex, 94.9 0.26 5.6E-06 59.2 12.4 146 833-982 100-260 (1405)
421 COG3204 Uncharacterized protei 94.7 6 0.00013 41.0 21.4 187 832-1022 84-296 (316)
422 PF10168 Nup88: Nuclear pore c 94.6 5.2 0.00011 48.5 22.7 99 408-532 83-182 (717)
423 KOG2444 WD40 repeat protein [G 94.5 0.072 1.6E-06 52.2 5.6 143 513-663 32-178 (238)
424 KOG1916 Nuclear protein, conta 94.4 0.015 3.3E-07 67.2 1.0 255 831-1103 130-432 (1283)
425 PHA03098 kelch-like protein; P 94.3 1.6 3.4E-05 52.2 18.0 194 886-1104 294-520 (534)
426 PF12234 Rav1p_C: RAVE protein 94.3 1.1 2.5E-05 52.4 15.7 111 456-574 31-155 (631)
427 PF15390 DUF4613: Domain of un 94.3 0.88 1.9E-05 51.2 13.9 155 875-1041 20-188 (671)
428 COG3823 Glutamine cyclotransfe 94.2 2.3 4.9E-05 41.3 14.6 179 844-1027 55-247 (262)
429 PHA03098 kelch-like protein; P 94.1 1.6 3.4E-05 52.3 17.4 190 843-1044 293-516 (534)
430 KOG2280 Vacuolar assembly/sort 93.9 4.7 0.0001 47.1 19.0 205 348-585 44-256 (829)
431 TIGR03074 PQQ_membr_DH membran 93.6 23 0.00051 43.5 39.2 198 470-667 196-482 (764)
432 PF12234 Rav1p_C: RAVE protein 93.4 2.6 5.7E-05 49.5 16.5 121 870-993 25-155 (631)
433 PHA02790 Kelch-like protein; P 93.4 3.9 8.3E-05 47.9 18.4 190 886-1103 271-478 (480)
434 PF15390 DUF4613: Domain of un 93.1 19 0.00042 41.1 30.4 151 455-619 20-187 (671)
435 KOG2280 Vacuolar assembly/sort 93.0 4.2 9.1E-05 47.4 16.9 148 896-1048 63-255 (829)
436 PHA02790 Kelch-like protein; P 92.9 3.2 6.8E-05 48.6 16.8 185 843-1042 270-473 (480)
437 COG4257 Vgb Streptogramin lyas 92.9 12 0.00026 38.2 18.5 203 876-1096 63-265 (353)
438 COG3292 Predicted periplasmic 92.6 23 0.00049 40.4 23.4 232 409-660 164-402 (671)
439 KOG1900 Nuclear pore complex, 92.5 7.1 0.00015 48.8 18.7 147 894-1040 96-273 (1311)
440 PF02333 Phytase: Phytase; In 92.3 21 0.00046 39.3 22.7 188 470-664 70-292 (381)
441 PLN00033 photosystem II stabil 92.2 23 0.00051 39.8 29.0 151 878-1036 242-396 (398)
442 KOG4460 Nuclear pore complex, 92.1 1.9 4.2E-05 47.6 12.1 93 1009-1103 103-208 (741)
443 TIGR02604 Piru_Ver_Nterm putat 91.9 6.5 0.00014 44.2 17.2 148 875-1029 14-203 (367)
444 COG1520 FOG: WD40-like repeat 91.8 8.2 0.00018 43.5 18.0 204 890-1104 71-279 (370)
445 COG1520 FOG: WD40-like repeat 91.7 27 0.00059 39.3 22.1 203 841-1049 65-278 (370)
446 PLN00033 photosystem II stabil 91.6 17 0.00037 40.8 19.6 148 835-991 240-396 (398)
447 KOG2247 WD40 repeat-containing 91.6 0.059 1.3E-06 58.4 0.4 238 772-1047 39-288 (615)
448 PF14781 BBS2_N: Ciliary BBSom 91.6 5.9 0.00013 35.9 12.6 115 973-1102 6-134 (136)
449 KOG1916 Nuclear protein, conta 91.5 0.42 9.1E-06 56.0 6.9 163 346-534 131-328 (1283)
450 PF13449 Phytase-like: Esteras 91.5 25 0.00055 38.6 22.0 149 832-982 18-231 (326)
451 COG3823 Glutamine cyclotransfe 91.2 4.6 0.0001 39.3 12.2 188 886-1083 55-249 (262)
452 KOG1898 Splicing factor 3b, su 91.0 47 0.001 40.9 35.2 105 839-948 939-1049(1205)
453 PF12657 TFIIIC_delta: Transcr 90.7 1.5 3.2E-05 43.0 9.1 31 410-440 86-122 (173)
454 COG3292 Predicted periplasmic 90.5 19 0.0004 41.0 17.8 276 345-658 162-443 (671)
455 PF10395 Utp8: Utp8 family; I 90.5 26 0.00055 41.5 19.9 166 409-584 129-314 (670)
456 PF10313 DUF2415: Uncharacteri 90.5 0.84 1.8E-05 31.9 4.9 32 348-379 1-34 (43)
457 PF13449 Phytase-like: Esteras 90.3 16 0.00034 40.3 17.8 164 874-1039 19-249 (326)
458 KOG1900 Nuclear pore complex, 90.2 3.2 7E-05 51.6 12.9 166 337-530 68-273 (1311)
459 COG5167 VID27 Protein involved 90.1 4.8 0.0001 44.5 12.7 145 886-1039 478-632 (776)
460 TIGR02604 Piru_Ver_Nterm putat 90.0 8.7 0.00019 43.2 15.8 102 348-467 14-136 (367)
461 PRK13684 Ycf48-like protein; P 89.9 35 0.00076 37.7 31.2 152 497-660 172-329 (334)
462 PF07676 PD40: WD40-like Beta 89.9 1.2 2.5E-05 30.8 5.6 31 345-375 6-38 (39)
463 PF10313 DUF2415: Uncharacteri 89.7 1.3 2.9E-05 30.9 5.4 32 410-441 1-35 (43)
464 PF08728 CRT10: CRT10; InterP 89.5 4.3 9.3E-05 48.2 12.9 174 845-1039 49-246 (717)
465 COG5167 VID27 Protein involved 89.3 14 0.00029 41.2 15.3 151 459-618 471-632 (776)
466 COG4590 ABC-type uncharacteriz 89.2 1.4 3E-05 47.7 7.8 159 832-998 219-390 (733)
467 KOG3630 Nuclear pore complex, 89.1 5.3 0.00011 48.8 13.2 145 918-1073 101-254 (1405)
468 PF02333 Phytase: Phytase; In 89.1 40 0.00088 37.2 23.4 190 843-1040 66-291 (381)
469 PF03022 MRJP: Major royal jel 88.9 36 0.00079 36.5 20.6 172 855-1028 35-254 (287)
470 smart00036 CNH Domain found in 88.9 38 0.00083 36.7 26.6 209 832-1048 41-279 (302)
471 PF11725 AvrE: Pathogenicity f 88.7 39 0.00084 44.0 20.6 69 917-992 702-770 (1774)
472 PF14761 HPS3_N: Hermansky-Pud 88.6 21 0.00045 35.6 14.9 173 888-1093 29-214 (215)
473 PLN02153 epithiospecifier prot 88.5 29 0.00062 38.6 18.6 23 928-950 85-112 (341)
474 PF03022 MRJP: Major royal jel 87.9 42 0.00092 36.0 20.2 190 792-982 13-252 (287)
475 TIGR03118 PEPCTERM_chp_1 conse 87.5 41 0.00089 35.4 22.2 203 456-664 24-281 (336)
476 COG4590 ABC-type uncharacteriz 87.1 14 0.0003 40.4 13.5 161 766-948 219-387 (733)
477 KOG2377 Uncharacterized conser 86.3 21 0.00045 39.3 14.3 130 966-1110 67-199 (657)
478 PF08728 CRT10: CRT10; InterP 86.3 38 0.00081 40.7 17.9 109 836-946 103-245 (717)
479 PF07569 Hira: TUP1-like enhan 85.9 3.9 8.5E-05 41.7 8.8 76 925-1000 18-101 (219)
480 PLN02193 nitrile-specifier pro 85.6 72 0.0016 37.2 20.3 219 886-1120 175-437 (470)
481 PF05935 Arylsulfotrans: Aryls 85.3 13 0.00029 43.3 13.9 133 971-1106 153-314 (477)
482 KOG2063 Vacuolar assembly/sort 84.8 51 0.0011 40.7 18.4 249 773-1047 20-276 (877)
483 KOG2377 Uncharacterized conser 84.5 17 0.00037 39.9 12.7 108 915-1028 64-172 (657)
484 TIGR03606 non_repeat_PQQ dehyd 84.4 26 0.00056 40.0 15.1 116 913-1030 25-166 (454)
485 TIGR03606 non_repeat_PQQ dehyd 83.0 94 0.002 35.6 28.5 63 346-421 28-90 (454)
486 PRK14131 N-acetylneuraminic ac 82.9 89 0.0019 35.2 19.9 40 612-653 314-353 (376)
487 PLN02153 epithiospecifier prot 82.8 83 0.0018 34.9 23.3 195 844-1044 32-289 (341)
488 PF07569 Hira: TUP1-like enhan 82.7 6.4 0.00014 40.2 8.7 72 355-440 18-96 (219)
489 PF10214 Rrn6: RNA polymerase 82.4 1.4E+02 0.0031 37.3 26.0 166 872-1041 77-278 (765)
490 PF14761 HPS3_N: Hermansky-Pud 82.1 58 0.0013 32.6 15.5 113 835-950 19-166 (215)
491 KOG4460 Nuclear pore complex, 82.0 97 0.0021 35.1 22.0 74 877-951 106-202 (741)
492 TIGR03118 PEPCTERM_chp_1 conse 81.8 74 0.0016 33.6 22.6 218 411-630 24-291 (336)
493 PF12768 Rax2: Cortical protei 81.0 40 0.00086 35.8 14.0 115 370-507 16-146 (281)
494 PF10214 Rrn6: RNA polymerase 80.9 1.6E+02 0.0035 36.9 28.6 159 832-995 78-277 (765)
495 PRK13615 lipoprotein LpqB; Pro 80.5 1.3E+02 0.0028 35.6 22.2 155 877-1041 336-504 (557)
496 cd08044 TAF5_NTD2 TAF5_NTD2 is 80.5 3.9 8.5E-05 37.9 5.8 59 67-126 25-83 (133)
497 PF04494 TFIID_90kDa: WD40 ass 80.5 1.7 3.6E-05 40.8 3.4 57 67-124 36-92 (142)
498 KOG1983 Tomosyn and related SN 80.4 41 0.00088 43.0 16.2 71 541-622 198-268 (993)
499 COG5276 Uncharacterized conser 79.8 83 0.0018 32.9 27.4 154 498-664 87-243 (370)
500 PF08801 Nucleoporin_N: Nup133 79.3 34 0.00073 39.4 14.3 31 1010-1040 190-220 (422)
No 1
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.4e-70 Score=545.06 Aligned_cols=491 Identities=22% Similarity=0.310 Sum_probs=404.6
Q ss_pred hHHHHHHHHHhhhhccHHHHHHHHHHhcCCCcc---HHHHHHHHhccCHHHHHHHhccCCCcCCCccchhhhHHHHHhHH
Q 001184 5 SRELVFLILQFLDEEKFKESVHRLEQESGFFFN---MKYFEEKALAGEWDEIEKYLSGFTKVDDNRYSMKIFFEIRKQKY 81 (1130)
Q Consensus 5 ~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~---~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~ 81 (1130)
+-|++|+++|+|+.+||.+|+.+||.|+|+.+. ...|.++++.|+|++++..+..+. .++.+....+.|++.||+|
T Consensus 17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~-~~de~~~~ea~fLv~kQ~f 95 (519)
T KOG0293|consen 17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRIS-FEDERNRKEAMFLVNKQIF 95 (519)
T ss_pred cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhcc-CcchhhhHHHHHHHHHHHH
Confidence 458999999999999999999999999999885 899999999999999999998773 3334556679999999999
Q ss_pred HHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccccccccccccCCCChhHHHHHHHHHHhhcccCcCccccc
Q 001184 82 LEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTRSARTIMLVELKKLIEANPLFRDKL 161 (1130)
Q Consensus 82 lell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~ 161 (1130)
||++..|....|+.+||+++.++. ++.+++++|+.-|..++....-+...-......|.+|+++|+++|||++|
T Consensus 96 LEf~k~~~is~al~~l~~~~~~lr-~~~kk~~el~~sll~sn~~~~ne~~~~~~~~n~R~~ll~elskyi~p~il----- 169 (519)
T KOG0293|consen 96 LEFLKTGSISHALPVLRNPVLYLR-KNKKKFHELASSLLVSNDQFSNEENTTAQLNNERDKLLDELSKYIPPNIL----- 169 (519)
T ss_pred HHHHhhccHhhhhHhhhcchhhhh-hhHHHHHHHHHHHhccccccccccchhhhhchhHHHHHHHHHhhCCHhhc-----
Confidence 999999999999999999999885 57899999988776654332222111112357799999999999999999
Q ss_pred cCCCCChHHHHHHHHHHHHHHHhhccCCCCCCCcccccccccCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCC
Q 001184 162 VFPSLKTSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCSPPNGARAPTPVTLPVAAVAKPATYAPLGAHAVPFPP 241 (1130)
Q Consensus 162 ~~~~~p~~rL~~ll~qa~~~q~~~~~~~~~~~~~~sl~~~h~c~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 241 (1130)
+|++||++||+||+++|++.|.|||. .+..|||.||.|++.++ |+ .+.++|.+|++
T Consensus 170 ----lP~rRLehLl~qAv~~Q~d~cvyhns-ldsvsll~Dh~c~~~qi-----p~----------qt~qil~~htd---- 225 (519)
T KOG0293|consen 170 ----LPKRRLEHLLEQAVKYQRDSCVYHNS-LDSVSLLSDHFCGRLQI-----PS----------QTWQILQDHTD---- 225 (519)
T ss_pred ----CChHHHHHHHHHHHHHHHhHhHHhcc-cchhhhhhhcccCcccC-----Cc----------hhhhhHhhCCC----
Confidence 99999999999999999999999995 66699999999999773 33 44555665544
Q ss_pred CccccCchhhhhccccCCCCCcccccccccCCCCCCCCccccccCCCCCCCCCccccCCCCChHHHHHhhcccCCccccc
Q 001184 242 AVAAANANALAGWMMNANPSSSIQSSVVAASSLPVQPNQVSVLKHPRAPSNTLGMIDYPSSDHEQLKKRLRASQSVDEAT 321 (1130)
Q Consensus 242 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (1130)
T Consensus 226 -------------------------------------------------------------------------------- 225 (519)
T KOG0293|consen 226 -------------------------------------------------------------------------------- 225 (519)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCcccccCCcccceeeeccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeecccccccee
Q 001184 322 YPVPSQQATWSLDDLPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQ 401 (1130)
Q Consensus 322 ~s~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (1130)
+|+-+.||++|+| ||+++.|.+..||++.....+. .
T Consensus 226 ---------------------------EVWfl~FS~nGky-LAsaSkD~Taiiw~v~~d~~~k----------------l 261 (519)
T KOG0293|consen 226 ---------------------------EVWFLQFSHNGKY-LASASKDSTAIIWIVVYDVHFK----------------L 261 (519)
T ss_pred ---------------------------cEEEEEEcCCCee-EeeccCCceEEEEEEecCccee----------------e
Confidence 4555555666664 6677777777777765433321 1
Q ss_pred eeeecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEE
Q 001184 402 AAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIR 481 (1130)
Q Consensus 402 ~~~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~ 481 (1130)
.+++.+|..+|..+.||||.++|++|+.|..+++||+.+|...... -.+|...+.+++|.|||. .+++|+.|+++.
T Consensus 262 ~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y--~~~~~~S~~sc~W~pDg~--~~V~Gs~dr~i~ 337 (519)
T KOG0293|consen 262 KKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLY--PSGLGFSVSSCAWCPDGF--RFVTGSPDRTII 337 (519)
T ss_pred eeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhc--ccCcCCCcceeEEccCCc--eeEecCCCCcEE
Confidence 1257899999999999999999999999999999999999876532 134668999999999999 799999999999
Q ss_pred EEecCCCeeeEecCCC-cCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEee
Q 001184 482 VWDLSGRKLFQFEGHE-APVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCG 560 (1130)
Q Consensus 482 iwd~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 560 (1130)
.||.+|..+...++-. ..|.++++. .||+++++.+.|..|++++.++...+.. .....+|+++..+.|++++++.-
T Consensus 338 ~wdlDgn~~~~W~gvr~~~v~dlait--~Dgk~vl~v~~d~~i~l~~~e~~~dr~l-ise~~~its~~iS~d~k~~LvnL 414 (519)
T KOG0293|consen 338 MWDLDGNILGNWEGVRDPKVHDLAIT--YDGKYVLLVTVDKKIRLYNREARVDRGL-ISEEQPITSFSISKDGKLALVNL 414 (519)
T ss_pred EecCCcchhhcccccccceeEEEEEc--CCCcEEEEEecccceeeechhhhhhhcc-ccccCceeEEEEcCCCcEEEEEc
Confidence 9999999988888754 468888884 5778999999999999999887665543 33456799999999999998876
Q ss_pred ecCCCCcEEEEeeCCCCceeEEEecccCcee-EEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceE
Q 001184 561 TSKEGDSHLVEWNESEGALKRTYIGFRKKSA-GVVQFDT-TRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRL 638 (1130)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v-~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v 638 (1130)
. +..+++||++..+.++.+.||..+.. -.-||.. +..++++|++|+.|+||+..+|+++..+.+|.. .|+++
T Consensus 415 ~----~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~--~vNcV 488 (519)
T KOG0293|consen 415 Q----DQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSK--TVNCV 488 (519)
T ss_pred c----cCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcc--eeeEE
Confidence 5 78899999999999999999887532 2244543 447999999999999999999999999998765 89999
Q ss_pred EEcC-CCCEEEEEeCCCcEEEEEcCC
Q 001184 639 RFNK-EGNLLVVTTADQGIKILANAD 663 (1130)
Q Consensus 639 ~~s~-~~~~l~~~~~dg~i~iw~~~~ 663 (1130)
+|+| +..++|++++||+||||....
T Consensus 489 swNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 489 SWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred ecCCCCHHHhhccCCCCeEEEecCCc
Confidence 9999 667899999999999998754
No 2
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.7e-64 Score=485.41 Aligned_cols=490 Identities=20% Similarity=0.293 Sum_probs=404.5
Q ss_pred chHHHHHHHHHhhhhccHHHHHHHHHHhcCCCcc----HHHHHHHHhccCHHHHHHHhccCCCcCCCccchhhhHHHHHh
Q 001184 4 LSRELVFLILQFLDEEKFKESVHRLEQESGFFFN----MKYFEEKALAGEWDEIEKYLSGFTKVDDNRYSMKIFFEIRKQ 79 (1130)
Q Consensus 4 ~~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~ 79 (1130)
-+.+|||||+|||+|+.+.++.++||+|++++|| ++-|-+.|.+|+||.+++.+++| +++.+.+..+|||
T Consensus 6 essdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsL------KLP~kkL~dLYEq 79 (508)
T KOG0275|consen 6 ESSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSL------KLPDKKLIDLYEQ 79 (508)
T ss_pred ecchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhc------cCchhHHHHHHHH
Confidence 4568999999999999999999999999999998 78999999999999999999998 5555678999999
Q ss_pred HHHHHHhcCCHHHHHHHHHhh--cccccccCHHHHHHHHHhhcccccccccccccCCCChhHHHHHHHHHHhhcccCcCc
Q 001184 80 KYLEALDRHDRAKAVEILVKD--LKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTRSARTIMLVELKKLIEANPLF 157 (1130)
Q Consensus 80 ~~lell~~~~~~~a~~~l~~~--~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~ 157 (1130)
..|||+|.+|...|..+||+. +..+.+.+||||.+|..||..+.++.++.+.+ .+.+..|..+.+.|...+.-
T Consensus 80 ivlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~d-ssKEkrRa~IAQ~ls~EV~V---- 154 (508)
T KOG0275|consen 80 IVLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREAYGD-SSKEKRRAVIAQALSGEVHV---- 154 (508)
T ss_pred HHHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhhcCc-chHHHHHHHHHHHhcCceEE----
Confidence 999999999999999999974 44456668999999999999999998888763 22344455666666655544
Q ss_pred cccccCCCCChHHHHHHHHHHHHHHHhhccCCCCCCCcccccccccCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCC
Q 001184 158 RDKLVFPSLKTSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCSPPNGARAPTPVTLPVAAVAKPATYAPLGAHAV 237 (1130)
Q Consensus 158 ~~~~~~~~~p~~rL~~ll~qa~~~q~~~~~~~~~~~~~~sl~~~h~c~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 237 (1130)
+||+||+.||+||++||.++.+.| ++.++ |
T Consensus 155 --------VppSRLlaLlGQaLKWQqHQGLLP-----------------------------------PGt~i-------D 184 (508)
T KOG0275|consen 155 --------VPPSRLLALLGQALKWQQHQGLLP-----------------------------------PGTTI-------D 184 (508)
T ss_pred --------cChHHHHHHHHHHhhhHhhcCCCC-----------------------------------CCcee-------e
Confidence 999999999999999999986543 33444 7
Q ss_pred CCCCCccccCchhhhhccccCCCCCcccccccccCCCCCCCCccccccCCCCCCCCCccccCCCCChHHHHHhhcccCCc
Q 001184 238 PFPPAVAAANANALAGWMMNANPSSSIQSSVVAASSLPVQPNQVSVLKHPRAPSNTLGMIDYPSSDHEQLKKRLRASQSV 317 (1130)
Q Consensus 238 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (1130)
+|++..+..... ...++.++...
T Consensus 185 LFRGkAA~K~~~--------------------------------------------------Ee~~Pt~l~r~------- 207 (508)
T KOG0275|consen 185 LFRGKAAMKDQE--------------------------------------------------EERYPTQLARS------- 207 (508)
T ss_pred eccchhhhhhhH--------------------------------------------------hhhchHHhhhh-------
Confidence 787754332200 00011111111
Q ss_pred ccccccCCCCCcccccCCcccceeeeccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccc
Q 001184 318 DEATYPVPSQQATWSLDDLPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCS 397 (1130)
Q Consensus 318 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 397 (1130)
+ .++.+..+.|..|||||++ |++|+.||.|.+||+.+|+..+...++.
T Consensus 208 --I----------------------KFg~KSh~EcA~FSPDgqy-LvsgSvDGFiEVWny~~GKlrKDLkYQA------- 255 (508)
T KOG0275|consen 208 --I----------------------KFGQKSHVECARFSPDGQY-LVSGSVDGFIEVWNYTTGKLRKDLKYQA------- 255 (508)
T ss_pred --e----------------------ecccccchhheeeCCCCce-Eeeccccceeeeehhccchhhhhhhhhh-------
Confidence 1 2457788999999999995 9999999999999999999876433221
Q ss_pred cceeeeeecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCC
Q 001184 398 MMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDD 477 (1130)
Q Consensus 398 ~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d 477 (1130)
..-+.-+..+|.|+.||.|...||+|+.||.|++|.+.+|.|++.. -..|+..|+++.||.|+. .+++++.|
T Consensus 256 ----qd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrF--drAHtkGvt~l~FSrD~S--qiLS~sfD 327 (508)
T KOG0275|consen 256 ----QDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRF--DRAHTKGVTCLSFSRDNS--QILSASFD 327 (508)
T ss_pred ----hcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHh--hhhhccCeeEEEEccCcc--hhhccccc
Confidence 1135567889999999999999999999999999999999999843 138999999999999999 68999999
Q ss_pred CcEEEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCC--ccEEEEEEecC-C
Q 001184 478 KLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPG--LWCTTMLYSAD-G 553 (1130)
Q Consensus 478 ~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~--~~v~~~~~s~~-~ 553 (1130)
.+++|.- .+|++++.|+||+..|+...|. ++|..+++++.||+|++|+..+.++..++...+ .+|.++..-|. -
T Consensus 328 ~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft--~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnp 405 (508)
T KOG0275|consen 328 QTVRIHGLKSGKCLKEFRGHSSYVNEATFT--DDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNP 405 (508)
T ss_pred ceEEEeccccchhHHHhcCccccccceEEc--CCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCC
Confidence 9999999 9999999999999999999884 677899999999999999999999888776543 47888887774 4
Q ss_pred CeEEEeeecCCCCcEEEEeeCCCCceeEEEeccc--CceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCC
Q 001184 554 SRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFR--KKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGG 631 (1130)
Q Consensus 554 ~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 631 (1130)
..+++|.. .++|++.++. |+.++.+.... ++..-+++.+|.|.++++.++|+.++.|.+.+|.+..++..|..
T Consensus 406 eh~iVCNr----sntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEk 480 (508)
T KOG0275|consen 406 EHFIVCNR----SNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEK 480 (508)
T ss_pred ceEEEEcC----CCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccc
Confidence 56777754 7889999865 88888886432 23456678999999999999999999999999999999988765
Q ss_pred CCCcceEEEcCCCCEEEEEeCCCcEEEEE
Q 001184 632 LPSLPRLRFNKEGNLLVVTTADQGIKILA 660 (1130)
Q Consensus 632 ~~~i~~v~~s~~~~~l~~~~~dg~i~iw~ 660 (1130)
.+..++.+|..+.+|+-+.||.+++|.
T Consensus 481 --dvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 481 --DVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred --cccccccCcccchhhhhcccchhhhcC
Confidence 688999999999999999999999995
No 3
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.2e-56 Score=476.41 Aligned_cols=575 Identities=19% Similarity=0.253 Sum_probs=477.9
Q ss_pred EEEecCCCeEEEEEeCcCeEEEEeCCCCcee-ecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeCCC
Q 001184 353 MDFHPFHHTLLVVGCGDGEITLWDVGLRERL-VSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKH 431 (1130)
Q Consensus 353 v~fspdg~~llasg~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~ 431 (1130)
++||++|+ +|++.+.| .|.+-|+.+++.. .. .-......+++++.+||+++|++++..+
T Consensus 25 ~~~s~nG~-~L~t~~~d-~Vi~idv~t~~~~l~s------------------~~~ed~d~ita~~l~~d~~~L~~a~rs~ 84 (775)
T KOG0319|consen 25 VAWSSNGQ-HLYTACGD-RVIIIDVATGSIALPS------------------GSNEDEDEITALALTPDEEVLVTASRSQ 84 (775)
T ss_pred eeECCCCC-EEEEecCc-eEEEEEccCCceeccc------------------CCccchhhhheeeecCCccEEEEeeccc
Confidence 89999999 58887655 7899999998873 21 1234567899999999999999999999
Q ss_pred eEEEEEecCCccceeeeeeec-CCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEeecccC
Q 001184 432 LIHLYTYQGSNDLCQSLEIDA-HVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKE 509 (1130)
Q Consensus 432 ~i~vwd~~~~~~~~~~~~~~~-h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~ 509 (1130)
.+++|++.+|+.++ .+.. |.++|.-++|.|.+. ++++|+.|+.+++|| ..+.+.+.|+||.+.|.++.|+|..
T Consensus 85 llrv~~L~tgk~ir---swKa~He~Pvi~ma~~~~g~--LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~ 159 (775)
T KOG0319|consen 85 LLRVWSLPTGKLIR---SWKAIHEAPVITMAFDPTGT--LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHW 159 (775)
T ss_pred eEEEEEcccchHhH---hHhhccCCCeEEEEEcCCCc--eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCcc
Confidence 99999999998776 4555 999999999999997 899999999999999 8889999999999999999999999
Q ss_pred CccEEEEEecCCcEEEEEccCCcc-eeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccC
Q 001184 510 NIHFIFSTAVDGKIKAWLYDNVGS-RVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRK 588 (1130)
Q Consensus 510 ~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~ 588 (1130)
+..+|++|..|+++++||++.... ...+..|...|++++|++|+..+++++. |..+.+||+.+.+..++++-..
T Consensus 160 ~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~R----Dkvi~vwd~~~~~~l~~lp~ye- 234 (775)
T KOG0319|consen 160 NRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGR----DKVIIVWDLVQYKKLKTLPLYE- 234 (775)
T ss_pred chhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEecc----CcEEEEeehhhhhhhheechhh-
Confidence 888999999999999999986554 6677889999999999999999999987 8899999998877777766432
Q ss_pred ceeEEEEEcCC-----CCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001184 589 KSAGVVQFDTT-----RNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANAD 663 (1130)
Q Consensus 589 ~~v~~~~~~~~-----~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 663 (1130)
.+.++.+-++ +.+++++|.+|.+++||.++++++........ ..+..+...+....++..+.|..+.++|.++
T Consensus 235 -~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~-~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~ 312 (775)
T KOG0319|consen 235 -SLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDS-EEIDHLLAIESMSQLLLVTAEQNLFLYDEDE 312 (775)
T ss_pred -heeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCc-hhhhcceeccccCceEEEEccceEEEEEccc
Confidence 4666667666 67999999999999999999988776654432 2366676666666777788899999999887
Q ss_pred CchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccc
Q 001184 664 GLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKP 743 (1130)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 743 (1130)
. +..+.+.|...++... + ...+....+++++..+.+++
T Consensus 313 l-~i~k~ivG~ndEI~Dm----------------------------------~-------~lG~e~~~laVATNs~~lr~ 350 (775)
T KOG0319|consen 313 L-TIVKQIVGYNDEILDM----------------------------------K-------FLGPEESHLAVATNSPELRL 350 (775)
T ss_pred c-EEehhhcCCchhheee----------------------------------e-------ecCCccceEEEEeCCCceEE
Confidence 7 6777777777766531 1 11234567888888899999
Q ss_pred eeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcc
Q 001184 744 WELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLL 823 (1130)
Q Consensus 744 w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 823 (1130)
|++.+.. |. -+ .+|...|.++....+|..+++++.|.++++|+++.+... .
T Consensus 351 y~~~~~~----c~--ii---~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~--------------------~ 401 (775)
T KOG0319|consen 351 YTLPTSY----CQ--II---PGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSK--------------------S 401 (775)
T ss_pred EecCCCc----eE--EE---eCchhheeeeeecccCcEEEEecCCceEEEEEecCCcch--------------------h
Confidence 9766532 33 22 459999999998888999999999999999987332111 0
Q ss_pred eeccCCCCCCCceeEEEEecCCC-EEEEEe-CCeEEEEECCCcee---------EEEEeCCCCCeEEEEEeCCCCcEEEE
Q 001184 824 MTNDVPENAEDVVPCVALSKNDS-YVMSAG-GGKVSLFNMMNFKV---------MTTFMSPPPASTFLAFHPQDNNIIAI 892 (1130)
Q Consensus 824 ~~~~~~~~~~~~i~~l~~s~dg~-~la~~~-dg~i~iwd~~~~~~---------~~~~~~~~~~i~~l~~sp~~~~~las 892 (1130)
.......+|...|.+++++..+. ++++++ |+++++|++...+. ..+...|...|++++++| +.+++|+
T Consensus 402 ~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT 480 (775)
T KOG0319|consen 402 LCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIAT 480 (775)
T ss_pred hhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEe
Confidence 11111237999999999987664 677777 99999999876211 113347999999999999 8999999
Q ss_pred EeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEE
Q 001184 893 GMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQ 972 (1130)
Q Consensus 893 g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~ 972 (1130)
|+.|++.+||+++......+|.||...|+++.|+|..+.|+|+|.|++|+||.+++..+ .+...+|. ..|..+.
T Consensus 481 ~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSC-----lkT~eGH~-~aVlra~ 554 (775)
T KOG0319|consen 481 GSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSC-----LKTFEGHT-SAVLRAS 554 (775)
T ss_pred cccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEecccee-----eeeecCcc-ceeEeee
Confidence 99999999999999999999999999999999999999999999999999999999665 34444443 7899999
Q ss_pred EcCCCcEEEE-EcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 001184 973 FHSDQVRLLV-NHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADS 1040 (1130)
Q Consensus 973 ~s~d~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~ 1040 (1130)
|-.+|..|++ +.||-+++|++++.+|+..+..| +..|++++.++++.+++||+.||.|.+|.=-+
T Consensus 555 F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H---~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 555 FIRNGKQLISAGADGLIKLWNIKTNECEMTLDAH---NDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred eeeCCcEEEeccCCCcEEEEeccchhhhhhhhhc---cceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 9999999998 68999999999999999999877 89999999999999999999999999995433
No 4
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.1e-53 Score=451.21 Aligned_cols=574 Identities=12% Similarity=0.207 Sum_probs=462.1
Q ss_pred ccccCCCCCcc-------cccCCcccce-eeec--cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccce
Q 001184 320 ATYPVPSQQAT-------WSLDDLPRAV-ACTM--HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFK 389 (1130)
Q Consensus 320 ~~~s~~~~~~~-------~~~~~~~~~~-~~~~--~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~ 389 (1130)
++++++|+... ...|..+... +... +..+.+++++.+||+. .|++++..+.+++|++.+|+.++
T Consensus 25 ~~~s~nG~~L~t~~~d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~-~L~~a~rs~llrv~~L~tgk~ir----- 98 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGDRVIIIDVATGSIALPSGSNEDEDEITALALTPDEE-VLVTASRSQLLRVWSLPTGKLIR----- 98 (775)
T ss_pred eeECCCCCEEEEecCceEEEEEccCCceecccCCccchhhhheeeecCCcc-EEEEeeccceEEEEEcccchHhH-----
Confidence 77778776332 2233334444 3333 3667999999999998 58999999999999999998876
Q ss_pred eeeccccccceeeeeecC-CCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCc
Q 001184 390 IWDMSNCSMMLQAAIVKD-SSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQ 468 (1130)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~-h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~ 468 (1130)
.++. |+++|.-++|+|.|..||+|+.|+.++|||+..+.+.. .+.||.+.|.++.|.|+-.+
T Consensus 99 --------------swKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th---~fkG~gGvVssl~F~~~~~~ 161 (775)
T KOG0319|consen 99 --------------SWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTH---SFKGHGGVVSSLLFHPHWNR 161 (775)
T ss_pred --------------hHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEE---EecCCCceEEEEEeCCccch
Confidence 3555 99999999999999999999999999999999987665 78999999999999999876
Q ss_pred eEEEEEcCCCcEEEEe-c-CCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEE
Q 001184 469 LCIVTCGDDKLIRVWD-L-SGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTT 546 (1130)
Q Consensus 469 l~l~s~s~d~~v~iwd-~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 546 (1130)
.+|++|+.|+++++|| . ...++..+..|...|+++++.+ |+..+++++.|..+.+||+...+....+... ..+.+
T Consensus 162 ~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~--d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~y-e~~E~ 238 (775)
T KOG0319|consen 162 WLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSE--DSLELLSVGRDKVIIVWDLVQYKKLKTLPLY-ESLES 238 (775)
T ss_pred hheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeecc--CCceEEEeccCcEEEEeehhhhhhhheechh-hheee
Confidence 6789999999999999 5 3345889999999999999965 4678999999999999999665555544432 34777
Q ss_pred EEEecC-----CCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 001184 547 MLYSAD-----GSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVN 621 (1130)
Q Consensus 547 ~~~s~~-----~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 621 (1130)
+.+-++ |.+++++|. +|.++.||.+++++...........+..+...+..+.++....|..+.++|.++.+
T Consensus 239 vv~l~~~~~~~~~~~~TaG~----~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~ 314 (775)
T KOG0319|consen 239 VVRLREELGGKGEYIITAGG----SGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELT 314 (775)
T ss_pred EEEechhcCCcceEEEEecC----CceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccE
Confidence 888777 778999885 89999999999988766554333345555555666778888889999999999999
Q ss_pred eeEEEeccCCCCCcceEEE-cCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeecccccc
Q 001184 622 MLTSTEAEGGLPSLPRLRF-NKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVL 700 (1130)
Q Consensus 622 ~~~~~~~~~~~~~i~~v~~-s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~ 700 (1130)
+...+-+... .|..+.| .|+.++||+++..+.+|+|++.+.. + ..+.+|...+.. +.
T Consensus 315 i~k~ivG~nd--EI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~-c-~ii~GH~e~vlS---------------L~--- 372 (775)
T KOG0319|consen 315 IVKQIVGYND--EILDMKFLGPEESHLAVATNSPELRLYTLPTSY-C-QIIPGHTEAVLS---------------LD--- 372 (775)
T ss_pred EehhhcCCch--hheeeeecCCccceEEEEeCCCceEEEecCCCc-e-EEEeCchhheee---------------ee---
Confidence 8888776544 6888776 5688999999999999999887652 2 267777765542 11
Q ss_pred ccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCC
Q 001184 701 SKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGI 780 (1130)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~ 780 (1130)
....+-.+++++.|.++++|+++.. ......+....+|.+.|.+++++..+.
T Consensus 373 ------------------------~~~~g~llat~sKD~svilWr~~~~----~~~~~~~a~~~gH~~svgava~~~~~a 424 (775)
T KOG0319|consen 373 ------------------------VWSSGDLLATGSKDKSVILWRLNNN----CSKSLCVAQANGHTNSVGAVAGSKLGA 424 (775)
T ss_pred ------------------------ecccCcEEEEecCCceEEEEEecCC----cchhhhhhhhcccccccceeeecccCc
Confidence 1123456889999999999999442 223333444577999999999987664
Q ss_pred -eEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEE
Q 001184 781 -GILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSL 858 (1130)
Q Consensus 781 -~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~i 858 (1130)
.+++++.|+++++|++...+...... +.. .......|...|.|++++|+.+++|+|+ |.+.+|
T Consensus 425 sffvsvS~D~tlK~W~l~~s~~~~~~~--------~~~-------~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKi 489 (775)
T KOG0319|consen 425 SFFVSVSQDCTLKLWDLPKSKETAFPI--------VLT-------CRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKI 489 (775)
T ss_pred cEEEEecCCceEEEecCCCcccccccc--------eeh-------hhHHHHhhcccccceEecCCCceEEecccccceee
Confidence 57778889999999987632221100 000 0011126999999999999999999999 999999
Q ss_pred EECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCC
Q 001184 859 FNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSD 938 (1130)
Q Consensus 859 wd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~D 938 (1130)
|+++.++...++.+|...+.++.|+| ..+++|+++.|++|+||.+.+..++++|.||+..|..+.|-.+|+.|+|++.|
T Consensus 490 W~le~~~l~~vLsGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~ad 568 (775)
T KOG0319|consen 490 WDLEQLRLLGVLSGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGAD 568 (775)
T ss_pred ecccCceEEEEeeCCccceEEEEecc-ccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCC
Confidence 99999999999999999999999999 88999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEE-EcCCcEEEEECCC
Q 001184 939 AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV-NHETQLAIYDGSK 995 (1130)
Q Consensus 939 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~d~~i~v~d~~~ 995 (1130)
|.|++|+++++++.... .. |.+.|.+++.++.+.++++ +.|+.|.+|.-.+
T Consensus 569 GliKlWnikt~eC~~tl-----D~-H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 569 GLIKLWNIKTNECEMTL-----DA-HNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred CcEEEEeccchhhhhhh-----hh-ccceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 99999999998775443 22 3488999999999998887 6799999997654
No 5
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=9.1e-50 Score=410.91 Aligned_cols=568 Identities=14% Similarity=0.208 Sum_probs=439.4
Q ss_pred EEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeCCCe
Q 001184 353 MDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHL 432 (1130)
Q Consensus 353 v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~~ 432 (1130)
+.-.|-|+.+|.+.+ ..|.+-++++..... ++.+|...++-..|||.|-|+|+|...|+
T Consensus 24 ig~dpkgd~ilY~nG--ksv~ir~i~~~~~~~-------------------iYtEH~~~vtVAkySPsG~yiASGD~sG~ 82 (603)
T KOG0318|consen 24 IGGDPKGDNILYTNG--KSVIIRNIDNPASVD-------------------IYTEHAHQVTVAKYSPSGFYIASGDVSGK 82 (603)
T ss_pred eccCCCCCeEEEeCC--CEEEEEECCCcccee-------------------eeccccceeEEEEeCCCceEEeecCCcCc
Confidence 344677777777653 478888888766543 68899999999999999999999999999
Q ss_pred EEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEc--CCC--cEEEEecCCCeeeEecCCCcCEEEEeeccc
Q 001184 433 IHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCG--DDK--LIRVWDLSGRKLFQFEGHEAPVYSVCPHQK 508 (1130)
Q Consensus 433 i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s--~d~--~v~iwd~~~~~~~~~~~h~~~v~~~~~~~~ 508 (1130)
|||||....+.+ ...+++.-.++|.+|+|+.|+++ |+..+ .++ .+.+|| +|..+-.+.||...|+++.|-|+
T Consensus 83 vRIWdtt~~~hi-LKnef~v~aG~I~Di~Wd~ds~R--I~avGEGrerfg~~F~~D-SG~SvGei~GhSr~ins~~~Kps 158 (603)
T KOG0318|consen 83 VRIWDTTQKEHI-LKNEFQVLAGPIKDISWDFDSKR--IAAVGEGRERFGHVFLWD-SGNSVGEITGHSRRINSVDFKPS 158 (603)
T ss_pred EEEEeccCccee-eeeeeeecccccccceeCCCCcE--EEEEecCccceeEEEEec-CCCccceeeccceeEeeeeccCC
Confidence 999998764432 33467788899999999999995 44443 333 455565 67778899999999999999876
Q ss_pred CCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEe---c
Q 001184 509 ENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYI---G 585 (1130)
Q Consensus 509 ~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~---~ 585 (1130)
.. -.++++++|++|.+|+-...+-...+..|..-|+++.|+|||.++++++. |+++++||-.+|+.+..+. +
T Consensus 159 RP-fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs----Dgki~iyDGktge~vg~l~~~~a 233 (603)
T KOG0318|consen 159 RP-FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS----DGKIYIYDGKTGEKVGELEDSDA 233 (603)
T ss_pred Cc-eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecC----CccEEEEcCCCccEEEEecCCCC
Confidence 54 57999999999999976655556677778889999999999999999987 9999999999999999988 6
Q ss_pred ccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCC-CCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 586 FRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGL-PSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 586 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
|.+ .|.+++|+||+..+++++.|.+++|||+.+.+++.++...... ..-..+.|. ...|++.+.+|+|.+++....
T Consensus 234 HkG-sIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~ 310 (603)
T KOG0318|consen 234 HKG-SIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDP 310 (603)
T ss_pred ccc-cEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCC
Confidence 555 8999999999999999999999999999999999998765431 122344554 557899999999999987766
Q ss_pred chhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccce
Q 001184 665 LRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPW 744 (1130)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w 744 (1130)
. ..+.+
T Consensus 311 ~-~~~~i------------------------------------------------------------------------- 316 (603)
T KOG0318|consen 311 S-VLKVI------------------------------------------------------------------------- 316 (603)
T ss_pred C-hhhee-------------------------------------------------------------------------
Confidence 2 22222
Q ss_pred eeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcce
Q 001184 745 ELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLM 824 (1130)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 824 (1130)
.+|...|+++..++++++|++++.||.|.-|+...+...+.
T Consensus 317 -------------------~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~-------------------- 357 (603)
T KOG0318|consen 317 -------------------SGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRL-------------------- 357 (603)
T ss_pred -------------------cccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccccc--------------------
Confidence 33888999999999999999999999999998765432110
Q ss_pred eccCCCCCCCceeEEEEecCCCEEEEEeCCeEEEEECCCceeEEE--EeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEE
Q 001184 825 TNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTT--FMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIY 902 (1130)
Q Consensus 825 ~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~--~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iw 902 (1130)
....|...|.+++.+..+.++.++-|.++++.++.....-.. .+. .....+++..+ ++.+++.+..++ |.+.
T Consensus 358 ---~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~l-g~QP~~lav~~-d~~~avv~~~~~-iv~l 431 (603)
T KOG0318|consen 358 ---AGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKL-GSQPKGLAVLS-DGGTAVVACISD-IVLL 431 (603)
T ss_pred ---ccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeec-CCCceeEEEcC-CCCEEEEEecCc-EEEE
Confidence 113689999999999988888888899999998865433222 222 22334888888 665666666555 4444
Q ss_pred EeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEE
Q 001184 903 NVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV 982 (1130)
Q Consensus 903 d~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 982 (1130)
.-.++ +.... -.-...+++++|++..++.|+.|+.|.||.+...+....... ..+..+++.+++|||+.+|++
T Consensus 432 ~~~~~--~~~~~-~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~----~~h~a~iT~vaySpd~~yla~ 504 (603)
T KOG0318|consen 432 QDQTK--VSSIP-IGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKL----LEHRAAITDVAYSPDGAYLAA 504 (603)
T ss_pred ecCCc--ceeec-cccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeee----ecccCCceEEEECCCCcEEEE
Confidence 32222 12222 234578999999999999999999999999998664322211 223489999999999999999
Q ss_pred Ec-CCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCc
Q 001184 983 NH-ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQ 1061 (1130)
Q Consensus 983 ~~-d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 1061 (1130)
++ .+.+.+||+.+.+....... .|...|.+++|||+.+++|+|+.|-.|.||+++.-.....+. .+|
T Consensus 505 ~Da~rkvv~yd~~s~~~~~~~w~--FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~ik----------nAH 572 (603)
T KOG0318|consen 505 GDASRKVVLYDVASREVKTNRWA--FHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIK----------NAH 572 (603)
T ss_pred eccCCcEEEEEcccCceecceee--eeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEec----------ccc
Confidence 75 88999999998877433222 248899999999999999999999999999998655442222 234
Q ss_pred eeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 001184 1062 TVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPS 1093 (1130)
Q Consensus 1062 ~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~ 1093 (1130)
...+..+.|.. +..|++++.|..|++|++.
T Consensus 573 ~~gVn~v~wld--e~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 573 LGGVNSVAWLD--ESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred ccCceeEEEec--CceEEeccCcceeEEeccc
Confidence 44466677754 5789999999999999874
No 6
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.7e-49 Score=419.95 Aligned_cols=584 Identities=17% Similarity=0.285 Sum_probs=461.9
Q ss_pred EEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeCC
Q 001184 351 VSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTK 430 (1130)
Q Consensus 351 ~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d 430 (1130)
--+.|+|||.. +++ ...+.|.++|+.+.+-.. ..-.+...|++++.||+|.+|++....
T Consensus 18 Gnl~ft~dG~s-viS-PvGNrvsv~dLknN~S~T-------------------l~~e~~~NI~~ialSp~g~lllavdE~ 76 (893)
T KOG0291|consen 18 GNLVFTKDGNS-VIS-PVGNRVSVFDLKNNKSYT-------------------LPLETRYNITRIALSPDGTLLLAVDER 76 (893)
T ss_pred CcEEECCCCCE-EEe-ccCCEEEEEEccCCccee-------------------EEeecCCceEEEEeCCCceEEEEEcCC
Confidence 34789999986 443 335689999998755332 122567789999999999999999999
Q ss_pred CeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCC---------eeeEecCCCcCEE
Q 001184 431 HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGR---------KLFQFEGHEAPVY 501 (1130)
Q Consensus 431 ~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~---------~~~~~~~h~~~v~ 501 (1130)
|.+.+-++.....+. .+ .-+.+|.++.|||||+ ++|.|. .+.+.||..-+. ..+++.+|...|.
T Consensus 77 g~~~lvs~~~r~Vlh---~f-~fk~~v~~i~fSPng~--~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~ 149 (893)
T KOG0291|consen 77 GRALLVSLLSRSVLH---RF-NFKRGVGAIKFSPNGK--FFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDIT 149 (893)
T ss_pred CcEEEEecccceeeE---EE-eecCccceEEECCCCc--EEEEEe-cceeEEEecCcchhcccCcceEeeeecCCcccee
Confidence 999988887754333 12 2456799999999999 455443 578999993222 2356779999999
Q ss_pred EEeecccCCccEEEEEecCCcEEEEEccCCcc--eeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCC---
Q 001184 502 SVCPHQKENIHFIFSTAVDGKIKAWLYDNVGS--RVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE--- 576 (1130)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~--- 576 (1130)
++.|+ .|.++|++|+.|-.+++|.++..+. ...+.+|...|.+..|..+...+++.+. +|.+.+|....
T Consensus 150 si~Ws--~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvsk----dG~l~~W~~~~~P~ 223 (893)
T KOG0291|consen 150 SIDWS--DDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSK----DGALFVWTCDLRPP 223 (893)
T ss_pred EEEec--cCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEec----CceEEEEEecCCCc
Confidence 99995 5668999999999999999988777 4567888999999999999999999986 99999997651
Q ss_pred --------------------Cce----------eEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEE
Q 001184 577 --------------------GAL----------KRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTST 626 (1130)
Q Consensus 577 --------------------~~~----------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 626 (1130)
++. .+.+-......+++.+|++.-+.|++|-..|...+|.+....+++.+
T Consensus 224 ~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~L 303 (893)
T KOG0291|consen 224 ELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSL 303 (893)
T ss_pred ccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEe
Confidence 110 01111222246889999999999999999999999999999999999
Q ss_pred eccCCCCCcceEEEcCCCCEEEEEeCC-CcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccc
Q 001184 627 EAEGGLPSLPRLRFNKEGNLLVVTTAD-QGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAER 705 (1130)
Q Consensus 627 ~~~~~~~~i~~v~~s~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~ 705 (1130)
....+ +|..++|+..|.++|.|+.. |.+.+|+.....-.+
T Consensus 304 Sis~~--~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVl------------------------------------- 344 (893)
T KOG0291|consen 304 SISDQ--KILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVL------------------------------------- 344 (893)
T ss_pred ecccc--eeeEEEecccCCEEEEcCCccceEEEEEeeccceee-------------------------------------
Confidence 87655 79999999999999999775 889999986651100
Q ss_pred cCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEe
Q 001184 706 VDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILAL 785 (1130)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~ 785 (1130)
+ ..+|..++.+++++|||+.+++|
T Consensus 345 ---------------------------------------K-----------------QQgH~~~i~~l~YSpDgq~iaTG 368 (893)
T KOG0291|consen 345 ---------------------------------------K-----------------QQGHSDRITSLAYSPDGQLIATG 368 (893)
T ss_pred ---------------------------------------e-----------------ccccccceeeEEECCCCcEEEec
Confidence 0 04488999999999999999999
Q ss_pred eeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCCc
Q 001184 786 WSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNF 864 (1130)
Q Consensus 786 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~ 864 (1130)
++||.|++||. .+|..+.. ...|...|+.+.|+..|+.+++++ ||+|+.||+..+
T Consensus 369 ~eDgKVKvWn~----------------------~SgfC~vT--FteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY 424 (893)
T KOG0291|consen 369 AEDGKVKVWNT----------------------QSGFCFVT--FTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY 424 (893)
T ss_pred cCCCcEEEEec----------------------cCceEEEE--eccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc
Confidence 99999998864 33443332 236999999999999999999999 999999999999
Q ss_pred eeEEEEeCCCC-CeEEEEEeCCCCcEEEEEeCCC-cEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEE
Q 001184 865 KVMTTFMSPPP-ASTFLAFHPQDNNIIAIGMEDS-TIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLI 942 (1130)
Q Consensus 865 ~~~~~~~~~~~-~i~~l~~sp~~~~~lasg~~dg-~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~ 942 (1130)
+..+++..+.. .-.|++..| .|.++..|+.|. .|++|++++|+++..+.||.++|.+++|+|+|..|+|++.|.+|+
T Consensus 425 rNfRTft~P~p~QfscvavD~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVR 503 (893)
T KOG0291|consen 425 RNFRTFTSPEPIQFSCVAVDP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVR 503 (893)
T ss_pred ceeeeecCCCceeeeEEEEcC-CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEE
Confidence 99999986543 467888888 788998888875 699999999999999999999999999999999999999999999
Q ss_pred EEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEE-EcCCcEEEEECCCceeeeeeecC----------------
Q 001184 943 FWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV-NHETQLAIYDGSKMECIRQWVPQ---------------- 1005 (1130)
Q Consensus 943 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~---------------- 1005 (1130)
+||+-..... ...+. ....+..++|+|||+-+++ .-||.|.+||...+.....+.+.
T Consensus 504 iW~if~s~~~-vEtl~-----i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~ 577 (893)
T KOG0291|consen 504 IWDIFSSSGT-VETLE-----IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAE 577 (893)
T ss_pred EEEeeccCce-eeeEe-----eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehh
Confidence 9998763211 11122 2267899999999999998 56999999999877766444322
Q ss_pred -CCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCccc-------------------------------
Q 001184 1006 -DVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYM------------------------------- 1053 (1130)
Q Consensus 1006 -~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~------------------------------- 1053 (1130)
.......+.+++|+||++|++|+..+.|++|++.++.++.+++...-.
T Consensus 578 ~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e 657 (893)
T KOG0291|consen 578 NSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLE 657 (893)
T ss_pred hcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCcccccccccccc
Confidence 112468899999999999999999999999999998777665421100
Q ss_pred -------c---cCCC----CCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCc
Q 001184 1054 -------S---QASP----NSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETE 1096 (1130)
Q Consensus 1054 -------~---~~~~----~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~~~~ 1096 (1130)
| .++. ....+.+..+.|+|. ++-++.++..| |.||.+.+.-
T Consensus 658 ~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsPt-graFAaatTEG-l~IYsld~~~ 712 (893)
T KOG0291|consen 658 GRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSPT-GRAFAAATTEG-LLIYSLDTTI 712 (893)
T ss_pred ccccccCCccccCCccccccCceEEEEEEEECCC-cCeeeeecccc-eEEEecCCce
Confidence 0 0000 111577899999996 88999999999 7799986654
No 7
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=6.8e-49 Score=404.45 Aligned_cols=533 Identities=15% Similarity=0.234 Sum_probs=424.5
Q ss_pred ccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCE
Q 001184 344 MHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNF 423 (1130)
Q Consensus 344 ~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 423 (1130)
.+|...|+-..|||.|- ++|+|...|+|||||....+.+.+.+|+ .-.++|..++|++|+++
T Consensus 56 tEH~~~vtVAkySPsG~-yiASGD~sG~vRIWdtt~~~hiLKnef~-----------------v~aG~I~Di~Wd~ds~R 117 (603)
T KOG0318|consen 56 TEHAHQVTVAKYSPSGF-YIASGDVSGKVRIWDTTQKEHILKNEFQ-----------------VLAGPIKDISWDFDSKR 117 (603)
T ss_pred ccccceeEEEEeCCCce-EEeecCCcCcEEEEeccCcceeeeeeee-----------------ecccccccceeCCCCcE
Confidence 35999999999999997 5999999999999999876665544433 45678999999999999
Q ss_pred EEEEeCC----CeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCc
Q 001184 424 IGVAFTK----HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEA 498 (1130)
Q Consensus 424 las~~~d----~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~ 498 (1130)
|++.++- |.+.+|| +|..+. ++.||...|.+++|-|.-.. .++||++|++|.+|+ .--+.-.++..|..
T Consensus 118 I~avGEGrerfg~~F~~D--SG~SvG---ei~GhSr~ins~~~KpsRPf-Ri~T~sdDn~v~ffeGPPFKFk~s~r~Hsk 191 (603)
T KOG0318|consen 118 IAAVGEGRERFGHVFLWD--SGNSVG---EITGHSRRINSVDFKPSRPF-RIATGSDDNTVAFFEGPPFKFKSSFREHSK 191 (603)
T ss_pred EEEEecCccceeEEEEec--CCCccc---eeeccceeEeeeeccCCCce-EEEeccCCCeEEEeeCCCeeeeeccccccc
Confidence 9887643 3455565 454444 68999999999999998765 899999999999999 66677788889999
Q ss_pred CEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeec---CCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCC
Q 001184 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD---APGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES 575 (1130)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1130)
-|+++.|+| ||..+++++.||++.+||-.+++....+. .|.+.|.+++|+||++.+++++. |.++++||+.
T Consensus 192 FV~~VRysP--DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa----Dkt~KIWdVs 265 (603)
T KOG0318|consen 192 FVNCVRYSP--DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSA----DKTIKIWDVS 265 (603)
T ss_pred ceeeEEECC--CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecC----CceEEEEEee
Confidence 999999965 57899999999999999999999998887 78889999999999999999986 8999999999
Q ss_pred CCceeEEEecccC---ceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeC
Q 001184 576 EGALKRTYIGFRK---KSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTA 652 (1130)
Q Consensus 576 ~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~ 652 (1130)
+.++++++..... ..+.|+ |. +..|++.+.+|.|.+++......+..+.+|.. .|+++..+|++++|++|+.
T Consensus 266 ~~slv~t~~~~~~v~dqqvG~l-Wq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK--~ITaLtv~~d~~~i~Sgsy 340 (603)
T KOG0318|consen 266 TNSLVSTWPMGSTVEDQQVGCL-WQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNK--SITALTVSPDGKTIYSGSY 340 (603)
T ss_pred ccceEEEeecCCchhceEEEEE-Ee--CCeEEEEEcCcEEEEecccCCChhheeccccc--ceeEEEEcCCCCEEEeecc
Confidence 9999998875433 234433 43 67899999999999999999998888887655 8999999999999999999
Q ss_pred CCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcc
Q 001184 653 DQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPR 732 (1130)
Q Consensus 653 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (1130)
||.|.-|+...+..... .
T Consensus 341 DG~I~~W~~~~g~~~~~---------------------------~----------------------------------- 358 (603)
T KOG0318|consen 341 DGHINSWDSGSGTSDRL---------------------------A----------------------------------- 358 (603)
T ss_pred CceEEEEecCCcccccc---------------------------c-----------------------------------
Confidence 99999999877621100 0
Q ss_pred cccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccc
Q 001184 733 NLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVA 812 (1130)
Q Consensus 733 ~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 812 (1130)
+..|...|.+++.+..+. +++++.|.++++.++..+.......
T Consensus 359 ------------------------------g~~h~nqI~~~~~~~~~~-~~t~g~Dd~l~~~~~~~~~~t~~~~------ 401 (603)
T KOG0318|consen 359 ------------------------------GKGHTNQIKGMAASESGE-LFTIGWDDTLRVISLKDNGYTKSEV------ 401 (603)
T ss_pred ------------------------------cccccceEEEEeecCCCc-EEEEecCCeEEEEecccCcccccce------
Confidence 023778888888876554 7788888899887664432211110
Q ss_pred cccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEeCCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEE
Q 001184 813 PQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAI 892 (1130)
Q Consensus 813 ~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~las 892 (1130)
. .......+++..+|+.+++...++.|.+..-.+.- .+.. ..-...+++++| ++..+|+
T Consensus 402 -----------~------~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~--~~~~-~~y~~s~vAv~~-~~~~vaV 460 (603)
T KOG0318|consen 402 -----------V------KLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKV--SSIP-IGYESSAVAVSP-DGSEVAV 460 (603)
T ss_pred -----------e------ecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcc--eeec-cccccceEEEcC-CCCEEEE
Confidence 0 11233348999999988888887666666533322 1221 234578899999 9999999
Q ss_pred EeCCCcEEEEEeecCeE--EEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEE
Q 001184 893 GMEDSTIQIYNVRVDEV--KTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETR 970 (1130)
Q Consensus 893 g~~dg~v~iwd~~~~~~--~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~ 970 (1130)
|+.||.|+||.+..+.+ ...+..|.++|+++++|||+.+||++...+.+.+||+.+.+...... .-|...|.+
T Consensus 461 GG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w-----~FHtakI~~ 535 (603)
T KOG0318|consen 461 GGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRW-----AFHTAKINC 535 (603)
T ss_pred ecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceeccee-----eeeeeeEEE
Confidence 99999999999987653 33567899999999999999999999999999999999966522111 123378999
Q ss_pred EEEcCCCcEEEEE-cCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 001184 971 VQFHSDQVRLLVN-HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDAD 1039 (1130)
Q Consensus 971 ~~~s~d~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~ 1039 (1130)
++|+|+..++|++ -|..|.||+++.-... +....+|...|+.+.|- |...+++++.|..|++|++.
T Consensus 536 ~aWsP~n~~vATGSlDt~Viiysv~kP~~~--i~iknAH~~gVn~v~wl-de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 536 VAWSPNNKLVATGSLDTNVIIYSVKKPAKH--IIIKNAHLGGVNSVAWL-DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred EEeCCCceEEEeccccceEEEEEccChhhh--eEeccccccCceeEEEe-cCceEEeccCcceeEEeccc
Confidence 9999999999995 5999999999864443 22334457779999997 55678899999999999874
No 8
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.9e-48 Score=415.96 Aligned_cols=552 Identities=16% Similarity=0.243 Sum_probs=434.8
Q ss_pred eccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCC
Q 001184 343 TMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN 422 (1130)
Q Consensus 343 ~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~ 422 (1130)
.+.+...|++++.||+|. +|++-...|...+-++.....++... .+..|.|+.|||||+
T Consensus 51 ~~e~~~NI~~ialSp~g~-lllavdE~g~~~lvs~~~r~Vlh~f~--------------------fk~~v~~i~fSPng~ 109 (893)
T KOG0291|consen 51 PLETRYNITRIALSPDGT-LLLAVDERGRALLVSLLSRSVLHRFN--------------------FKRGVGAIKFSPNGK 109 (893)
T ss_pred EeecCCceEEEEeCCCce-EEEEEcCCCcEEEEecccceeeEEEe--------------------ecCccceEEECCCCc
Confidence 356899999999999997 57777788888888887766665322 246899999999999
Q ss_pred EEEEEeCCCeEEEEEecCCcc-----ceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-c--CCCeeeEec
Q 001184 423 FIGVAFTKHLIHLYTYQGSND-----LCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-L--SGRKLFQFE 494 (1130)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~-----~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~--~~~~~~~~~ 494 (1130)
++|+|.. +.+.||....... .....++.+|...|.++.|+.|.+ ++++|+.|.++++|+ . ++-..+.+.
T Consensus 110 ~fav~~g-n~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr--~l~~gsrD~s~rl~~v~~~k~~~~~~l~ 186 (893)
T KOG0291|consen 110 FFAVGCG-NLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSR--LLVTGSRDLSARLFGVDGNKNLFTYALN 186 (893)
T ss_pred EEEEEec-ceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCc--eEEeccccceEEEEEeccccccceEecc
Confidence 9999864 5799998765332 233446779999999999999999 899999999999999 2 333467788
Q ss_pred CCCcCEEEEeecccCCccEEEEEecCCcEEEEEccC-----------------------Ccc-----------eeeecCC
Q 001184 495 GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDN-----------------------VGS-----------RVDYDAP 540 (1130)
Q Consensus 495 ~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~-----------------------~~~-----------~~~~~~~ 540 (1130)
+|...|....|. .+...+++.+.||.+.+|.... ++. ..-+...
T Consensus 187 gHkd~VvacfF~--~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~ 264 (893)
T KOG0291|consen 187 GHKDYVVACFFG--ANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQN 264 (893)
T ss_pred CCCcceEEEEec--cCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeeccc
Confidence 999999998885 4446799999999999997761 011 0011222
Q ss_pred CccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCC-CcEEEEeCCC
Q 001184 541 GLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGED-NQIKFWDMDN 619 (1130)
Q Consensus 541 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~vwd~~~ 619 (1130)
...+++.+|++..+.|+++-. .|...+|.+....+++.+.-... .+..++|+..|.+|+.|+.. |.+-||+..+
T Consensus 265 ~~kvtaa~fH~~t~~lvvgFs----sG~f~LyelP~f~lih~LSis~~-~I~t~~~N~tGDWiA~g~~klgQLlVweWqs 339 (893)
T KOG0291|consen 265 SSKVTAAAFHKGTNLLVVGFS----SGEFGLYELPDFNLIHSLSISDQ-KILTVSFNSTGDWIAFGCSKLGQLLVWEWQS 339 (893)
T ss_pred ccceeeeeccCCceEEEEEec----CCeeEEEecCCceEEEEeecccc-eeeEEEecccCCEEEEcCCccceEEEEEeec
Confidence 356889999999999999876 78899999999999988876433 79999999999999998764 8999999988
Q ss_pred CceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccc
Q 001184 620 VNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPV 699 (1130)
Q Consensus 620 ~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~ 699 (1130)
..-+...+ +|...+++++++|||+++|+|++||.|+|||...+. ++.+
T Consensus 340 EsYVlKQQ--gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf-C~vT----------------------------- 387 (893)
T KOG0291|consen 340 ESYVLKQQ--GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGF-CFVT----------------------------- 387 (893)
T ss_pred cceeeecc--ccccceeeEEECCCCcEEEeccCCCcEEEEeccCce-EEEE-----------------------------
Confidence 76555554 455589999999999999999999999999987762 1111
Q ss_pred cccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccC
Q 001184 700 LSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSG 779 (1130)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g 779 (1130)
+ ..|.+.++.+.|+..|
T Consensus 388 ------------------------------------------------------------F---teHts~Vt~v~f~~~g 404 (893)
T KOG0291|consen 388 ------------------------------------------------------------F---TEHTSGVTAVQFTARG 404 (893)
T ss_pred ------------------------------------------------------------e---ccCCCceEEEEEEecC
Confidence 1 2388999999999999
Q ss_pred CeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-C-CeEE
Q 001184 780 IGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-G-GKVS 857 (1130)
Q Consensus 780 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-d-g~i~ 857 (1130)
+.+++.+-||+++.||+.....- .. +.........|++..|.|.++++|+ | =.|.
T Consensus 405 ~~llssSLDGtVRAwDlkRYrNf----------------------RT-ft~P~p~QfscvavD~sGelV~AG~~d~F~If 461 (893)
T KOG0291|consen 405 NVLLSSSLDGTVRAWDLKRYRNF----------------------RT-FTSPEPIQFSCVAVDPSGELVCAGAQDSFEIF 461 (893)
T ss_pred CEEEEeecCCeEEeeeeccccee----------------------ee-ecCCCceeeeEEEEcCCCCEEEeeccceEEEE
Confidence 99999999999999997642111 00 1112344567899999999999998 4 3499
Q ss_pred EEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecC-eEEEEEecCCCCeeEEEEccCCCeEEEEe
Q 001184 858 LFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVD-EVKTKLKGHQKHITGLAFSTNLNILVSSG 936 (1130)
Q Consensus 858 iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~-~~~~~l~~h~~~V~~l~~s~dg~~L~s~s 936 (1130)
+|++++|+.+..+.+|.++|.+++|+| .+.+||+|++|.+|++||+-.. ..+.++. +...+++++|+|||+.|++++
T Consensus 462 vWS~qTGqllDiLsGHEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaT 539 (893)
T KOG0291|consen 462 VWSVQTGQLLDILSGHEGPVSGLSFSP-DGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVAT 539 (893)
T ss_pred EEEeecCeeeehhcCCCCcceeeEEcc-ccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEE
Confidence 999999999999999999999999999 8999999999999999999754 3445554 667799999999999999999
Q ss_pred CCCcEEEEECCCCccccee--------------eEeccCCCCCCCeEEEEEcCCCcEEEE-EcCCcEEEEECCCceeeee
Q 001184 937 SDAQLIFWNTDTWEKRKSI--------------AIQLPAGKLPVGETRVQFHSDQVRLLV-NHETQLAIYDGSKMECIRQ 1001 (1130)
Q Consensus 937 ~Dg~i~vwd~~~~~~~~~~--------------~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~d~~i~v~d~~~~~~~~~ 1001 (1130)
-||.|.+||++.+...... .+...........+.+++|+||.++++ +..+.|++|++.++-.++.
T Consensus 540 ldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkk 619 (893)
T KOG0291|consen 540 LDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKK 619 (893)
T ss_pred ecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeee
Confidence 9999999999875544211 111111122357899999999999988 6789999999998887776
Q ss_pred eecCCC-----------------------------------------------------CCCCeEEEEECCCCCEEEEEe
Q 001184 1002 WVPQDV-----------------------------------------------------LSSPISSAAYSCNSQLIYATF 1028 (1130)
Q Consensus 1002 ~~~~~~-----------------------------------------------------~~~~v~~v~~s~dg~~l~t~~ 1028 (1130)
+..... ..-.|+++.|||.|+-+|+++
T Consensus 620 fqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsPtgraFAaat 699 (893)
T KOG0291|consen 620 FQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSPTGRAFAAAT 699 (893)
T ss_pred EEeccccchhHHHHHhccccccccCCccccccccccccccccccCCccccCCccccccCceEEEEEEEECCCcCeeeeec
Confidence 522111 012478999999999999999
Q ss_pred CCCcEEEEeCCCcccccc
Q 001184 1029 TDGSIGVFDADSLRLRCR 1046 (1130)
Q Consensus 1029 ~Dg~i~vwd~~~~~~~~~ 1046 (1130)
..| |.||.+.+.-+...
T Consensus 700 TEG-l~IYsld~~~~FDP 716 (893)
T KOG0291|consen 700 TEG-LLIYSLDTTILFDP 716 (893)
T ss_pred ccc-eEEEecCCceEEcc
Confidence 777 77888876654433
No 9
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.8e-50 Score=396.40 Aligned_cols=332 Identities=24% Similarity=0.378 Sum_probs=292.7
Q ss_pred ccceeeeccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEE
Q 001184 337 PRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVA 416 (1130)
Q Consensus 337 ~~~~~~~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 416 (1130)
+++-...-+|.+.|.|++|+|+|++ ||+|+.|.++|+||+.+..... +.++|...|.|++
T Consensus 105 trCssS~~GH~e~Vl~~~fsp~g~~-l~tGsGD~TvR~WD~~TeTp~~-------------------t~KgH~~WVlcva 164 (480)
T KOG0271|consen 105 TRCSSSIAGHGEAVLSVQFSPTGSR-LVTGSGDTTVRLWDLDTETPLF-------------------TCKGHKNWVLCVA 164 (480)
T ss_pred ceeccccCCCCCcEEEEEecCCCce-EEecCCCceEEeeccCCCCcce-------------------eecCCccEEEEEE
Confidence 3444444579999999999999995 9999999999999999877665 6889999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEec-----CCCceEEEEEcCCCcEEEEe-cCCCee
Q 001184 417 WSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSY-----PNKQLCIVTCGDDKLIRVWD-LSGRKL 490 (1130)
Q Consensus 417 ~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~-----d~~~l~l~s~s~d~~v~iwd-~~~~~~ 490 (1130)
|||||+.||+|+.||+|++||.++|+++.. .+.+|...|++++|-| ..+ +|++++.||+|+||| ..+.++
T Consensus 165 wsPDgk~iASG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r--~las~skDg~vrIWd~~~~~~~ 240 (480)
T KOG0271|consen 165 WSPDGKKIASGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCR--RLASSSKDGSVRIWDTKLGTCV 240 (480)
T ss_pred ECCCcchhhccccCCeEEEecCCCCCcccc--cccCcccceeEEeecccccCCCcc--ceecccCCCCEEEEEccCceEE
Confidence 999999999999999999999999987764 5889999999999976 455 799999999999999 888999
Q ss_pred eEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEe-----------cCCC-----
Q 001184 491 FQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYS-----------ADGS----- 554 (1130)
Q Consensus 491 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s-----------~~~~----- 554 (1130)
..+.||+.+|+|++|- ...++++|+.|++|++|+...+.....+.+|.++|+.++.+ |.++
T Consensus 241 ~~lsgHT~~VTCvrwG---G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~ 317 (480)
T KOG0271|consen 241 RTLSGHTASVTCVRWG---GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSF 317 (480)
T ss_pred EEeccCccceEEEEEc---CCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCCh
Confidence 9999999999999983 33599999999999999999988889999999999999887 2233
Q ss_pred --------------------eEEEeeecCCCCcEEEEeeCCC-CceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEE
Q 001184 555 --------------------RLFSCGTSKEGDSHLVEWNESE-GALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIK 613 (1130)
Q Consensus 555 --------------------~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 613 (1130)
++++++. +.++.+|+... .+++..+.+|.. .|+.+.|+||++++++++.|..|+
T Consensus 318 se~~~~Al~rY~~~~~~~~erlVSgsD----d~tlflW~p~~~kkpi~rmtgHq~-lVn~V~fSPd~r~IASaSFDkSVk 392 (480)
T KOG0271|consen 318 SEEQKKALERYEAVLKDSGERLVSGSD----DFTLFLWNPFKSKKPITRMTGHQA-LVNHVSFSPDGRYIASASFDKSVK 392 (480)
T ss_pred HHHHHHHHHHHHHhhccCcceeEEecC----CceEEEecccccccchhhhhchhh-heeeEEECCCccEEEEeeccccee
Confidence 4888875 89999999754 457788888777 899999999999999999999999
Q ss_pred EEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhccccccccccccccccccccee
Q 001184 614 FWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVV 693 (1130)
Q Consensus 614 vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1130)
+||..+|+.+.++.+|-. .|+.++|+.|.++|++|+.|.++++|++.+. .+...
T Consensus 393 LW~g~tGk~lasfRGHv~--~VYqvawsaDsRLlVS~SkDsTLKvw~V~tk-Kl~~D----------------------- 446 (480)
T KOG0271|consen 393 LWDGRTGKFLASFRGHVA--AVYQVAWSADSRLLVSGSKDSTLKVWDVRTK-KLKQD----------------------- 446 (480)
T ss_pred eeeCCCcchhhhhhhccc--eeEEEEeccCccEEEEcCCCceEEEEEeeee-eeccc-----------------------
Confidence 999999999999986644 8999999999999999999999999998765 11111
Q ss_pred eccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEE
Q 001184 694 TTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARL 773 (1130)
Q Consensus 694 ~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 773 (1130)
+ ++|..+|.++
T Consensus 447 ------------------------------------------------------------------L---pGh~DEVf~v 457 (480)
T KOG0271|consen 447 ------------------------------------------------------------------L---PGHADEVFAV 457 (480)
T ss_pred ------------------------------------------------------------------C---CCCCceEEEE
Confidence 1 3488999999
Q ss_pred EEeccCCeEEEeeeCCeEEeee
Q 001184 774 LYTNSGIGILALWSNGVQKLWK 795 (1130)
Q Consensus 774 ~~s~~g~~l~~~~~dg~i~iw~ 795 (1130)
.++|||..+++++.|..+++|.
T Consensus 458 DwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 458 DWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EecCCCceeecCCCceEEEeec
Confidence 9999999999999999999994
No 10
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.7e-47 Score=409.86 Aligned_cols=554 Identities=15% Similarity=0.240 Sum_probs=435.3
Q ss_pred ccccCCCCCcccccCCcccceeee-ccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeecccccc
Q 001184 320 ATYPVPSQQATWSLDDLPRAVACT-MHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSM 398 (1130)
Q Consensus 320 ~~~s~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 398 (1130)
++.|+..++.+|............ .....+|+|+.-+||.- +||+|..||.|+||+..++....
T Consensus 37 va~~a~E~vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l-~lAVGYaDGsVqif~~~s~~~~~-------------- 101 (888)
T KOG0306|consen 37 VAVSALEQVNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDIL-LLAVGYADGSVQIFSLESEEILI-------------- 101 (888)
T ss_pred EEEeccccEeEEeeecchhhhhhhhhcccceEEEeeccCCcc-eEEEEecCceEEeeccCCCceee--------------
Confidence 666666677888877653332222 34556999999999986 79999999999999999876554
Q ss_pred ceeeeeecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCC
Q 001184 399 MLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK 478 (1130)
Q Consensus 399 ~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~ 478 (1130)
.+.||..+|+++.|+..|..||+||.|+.|.+||+-....+ ..+.||.+.|+..-|..+.+ +++++|.|+
T Consensus 102 -----tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl---~rL~GHkd~iT~~~F~~~~~--~lvS~sKDs 171 (888)
T KOG0306|consen 102 -----TFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGL---FRLRGHKDSITQALFLNGDS--FLVSVSKDS 171 (888)
T ss_pred -----eecccccceEEEEEcccCceEeecCCCccEEEEEeccceee---EEeecchHHHhHHhccCCCe--EEEEeccCc
Confidence 57899999999999999999999999999999999775433 36899999999999998777 899999999
Q ss_pred cEEEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcce------e------e-ecCCCccE
Q 001184 479 LIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSR------V------D-YDAPGLWC 544 (1130)
Q Consensus 479 ~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~------~------~-~~~~~~~v 544 (1130)
.|++|| .+..|..+...|.+.++.+++.+ +.+++++.|+.+++|++...... . . .....+..
T Consensus 172 ~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~----~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~ 247 (888)
T KOG0306|consen 172 MIKFWDLETQHCFETHVDHRGEIWALVLDE----KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGRE 247 (888)
T ss_pred eEEEEecccceeeeEEecccceEEEEEEec----ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCce
Confidence 999999 88889999999999999999865 68999999999999998321110 0 0 11122234
Q ss_pred EEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCcee-----------------------------------EEEecccCc
Q 001184 545 TTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALK-----------------------------------RTYIGFRKK 589 (1130)
Q Consensus 545 ~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~-----------------------------------~~~~~~~~~ 589 (1130)
-.++..++++++++-+. |..+.++.+.+.+.+ ..+. ...
T Consensus 248 i~l~~d~s~r~~~c~g~----d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir--~~~ 321 (888)
T KOG0306|consen 248 INLVTDFSDRFLVCQGA----DKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIR--TSA 321 (888)
T ss_pred eEEeecCcccEEEEecc----hhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHhee--chh
Confidence 45667778888887765 667777766542110 0000 011
Q ss_pred eeEEEEEcCCCC---EEEEEeCCCcEEEEeCCC-Cc------eeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEE
Q 001184 590 SAGVVQFDTTRN---RILAAGEDNQIKFWDMDN-VN------MLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKIL 659 (1130)
Q Consensus 590 ~v~~~~~~~~~~---~l~~~~~dg~i~vwd~~~-~~------~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw 659 (1130)
.+..+.+.|.++ .++. -.++++..|.++. +. .+..+...+|...|.++++|.+...+++| ..+.+.+|
T Consensus 322 kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sg-a~~SikiW 399 (888)
T KOG0306|consen 322 KIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASG-AGESIKIW 399 (888)
T ss_pred heeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeec-CCCcEEEE
Confidence 345566666553 3333 5677888888765 21 23345555666789999999988776666 46799999
Q ss_pred EcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCC
Q 001184 660 ANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISD 739 (1130)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 739 (1130)
+..+. ++.+++
T Consensus 400 n~~t~-kciRTi-------------------------------------------------------------------- 410 (888)
T KOG0306|consen 400 NRDTL-KCIRTI-------------------------------------------------------------------- 410 (888)
T ss_pred EccCc-ceeEEe--------------------------------------------------------------------
Confidence 98776 333322
Q ss_pred CccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCC
Q 001184 740 KTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPS 819 (1130)
Q Consensus 740 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~ 819 (1130)
..+.+.+..|-|.+++++.|..+|.+.+||+.....
T Consensus 411 --------------------------~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l------------------ 446 (888)
T KOG0306|consen 411 --------------------------TCGYILASKFVPGDRYIVLGTKNGELQVFDLASASL------------------ 446 (888)
T ss_pred --------------------------ccccEEEEEecCCCceEEEeccCCceEEEEeehhhh------------------
Confidence 223667888999999999999999999998754221
Q ss_pred CCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCC-----ceeE--------EEEeCCCCCeEEEEEeCC
Q 001184 820 NGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMN-----FKVM--------TTFMSPPPASTFLAFHPQ 885 (1130)
Q Consensus 820 ~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~-----~~~~--------~~~~~~~~~i~~l~~sp~ 885 (1130)
+. ....|.+.|+.++.+||++.+++|+ |.+|++||..- +... ++++ -...|.|+.+||
T Consensus 447 ----~E--ti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Sp- 518 (888)
T KOG0306|consen 447 ----VE--TIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSP- 518 (888)
T ss_pred ----hh--hhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcC-
Confidence 11 1126999999999999999999999 99999999641 2211 1222 356799999999
Q ss_pred CCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCC
Q 001184 886 DNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLP 965 (1130)
Q Consensus 886 ~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 965 (1130)
|+++||++--|.+|+||-+++-+....+.||.-||.||..|||++.+++||.|++|++|-++-|.+.+... .|.
T Consensus 519 dgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~f------AHd 592 (888)
T KOG0306|consen 519 DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFF------AHD 592 (888)
T ss_pred CCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhh------ccc
Confidence 99999999999999999999999999999999999999999999999999999999999999988755442 234
Q ss_pred CCeEEEEEcCCCcEEEE-EcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 001184 966 VGETRVQFHSDQVRLLV-NHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADS 1040 (1130)
Q Consensus 966 ~~v~~~~~s~d~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~ 1040 (1130)
..|.++.|-|+..++.+ |.|+.++-||....+.++.+.+| -..|+|++.+|+|.++++++.|.+||+|.-..
T Consensus 593 DSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H---~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 593 DSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGH---HSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred CceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccc---hheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 78999999998887776 78999999999999999999888 68999999999999999999999999998665
No 11
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-49 Score=393.18 Aligned_cols=367 Identities=21% Similarity=0.313 Sum_probs=302.0
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iw 483 (1130)
.+.||.++|.|++|+|+|++||+|+.|.++++||+.+.... ++.++|...|.+++|+|||+ .|++|+.||+|++|
T Consensus 110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~---~t~KgH~~WVlcvawsPDgk--~iASG~~dg~I~lw 184 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPL---FTCKGHKNWVLCVAWSPDGK--KIASGSKDGSIRLW 184 (480)
T ss_pred ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcc---eeecCCccEEEEEEECCCcc--hhhccccCCeEEEe
Confidence 47799999999999999999999999999999999997644 47899999999999999999 89999999999999
Q ss_pred e-cCCCee-eEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeee
Q 001184 484 D-LSGRKL-FQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGT 561 (1130)
Q Consensus 484 d-~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 561 (1130)
| .+|+++ ..|.+|...|++++|.|-. ..|.+++|++++.
T Consensus 185 dpktg~~~g~~l~gH~K~It~Lawep~h---------------------------------------l~p~~r~las~sk 225 (480)
T KOG0271|consen 185 DPKTGQQIGRALRGHKKWITALAWEPLH---------------------------------------LVPPCRRLASSSK 225 (480)
T ss_pred cCCCCCcccccccCcccceeEEeecccc---------------------------------------cCCCccceecccC
Confidence 9 777655 7799999999999996522 2455667777765
Q ss_pred cCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEc
Q 001184 562 SKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFN 641 (1130)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s 641 (1130)
||.++|||+..+.++..+.+|.. .|+|+.|..+ .+|++|+.|++|++|+...|.+...+.+|++ .|+.++.+
T Consensus 226 ----Dg~vrIWd~~~~~~~~~lsgHT~-~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHah--wvN~lals 297 (480)
T KOG0271|consen 226 ----DGSVRIWDTKLGTCVRTLSGHTA-SVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAH--WVNHLALS 297 (480)
T ss_pred ----CCCEEEEEccCceEEEEeccCcc-ceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccch--heeeeecc
Confidence 88889999888999999999887 8999999865 4999999999999999999999999999988 89999988
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCC
Q 001184 642 KEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGA 721 (1130)
Q Consensus 642 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~ 721 (1130)
-+- .|-+|..|.+=+-....+ ....+.+..... ..+
T Consensus 298 Tdy-~LRtgaf~~t~~~~~~~s-e~~~~Al~rY~~-------------------~~~----------------------- 333 (480)
T KOG0271|consen 298 TDY-VLRTGAFDHTGRKPKSFS-EEQKKALERYEA-------------------VLK----------------------- 333 (480)
T ss_pred chh-hhhccccccccccCCChH-HHHHHHHHHHHH-------------------hhc-----------------------
Confidence 653 344554443322211111 111122211110 000
Q ss_pred CccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCC
Q 001184 722 DSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQ 801 (1130)
Q Consensus 722 ~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~ 801 (1130)
..+..++++++|.++.+|+-.....
T Consensus 334 -------------------------------------------------------~~~erlVSgsDd~tlflW~p~~~kk 358 (480)
T KOG0271|consen 334 -------------------------------------------------------DSGERLVSGSDDFTLFLWNPFKSKK 358 (480)
T ss_pred -------------------------------------------------------cCcceeEEecCCceEEEeccccccc
Confidence 1235577888888888886332111
Q ss_pred CCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEE
Q 001184 802 NPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFL 880 (1130)
Q Consensus 802 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l 880 (1130)
.+.. ..+|..-|..+.||||++++|+++ |..|++||..+|+.+.+|++|-..|..+
T Consensus 359 ---------------------pi~r--mtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqv 415 (480)
T KOG0271|consen 359 ---------------------PITR--MTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQV 415 (480)
T ss_pred ---------------------chhh--hhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEE
Confidence 1110 126899999999999999999999 9999999999999999999999999999
Q ss_pred EEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEE
Q 001184 881 AFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWN 945 (1130)
Q Consensus 881 ~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd 945 (1130)
+|+. |.++|++|+.|.++++|++.+.++...|.||.++|.++.|+|||..+++++.|+.+++|.
T Consensus 416 awsa-DsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 416 AWSA-DSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred Eecc-CccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 9999 899999999999999999999999999999999999999999999999999999999994
No 12
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-46 Score=403.64 Aligned_cols=570 Identities=16% Similarity=0.174 Sum_probs=438.5
Q ss_pred CCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCc
Q 001184 420 DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEA 498 (1130)
Q Consensus 420 dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~ 498 (1130)
.|+++|+.. -..|.+||+++|+..+.. ....-...|+++.-++|.- +||.|..||.|+||+ .++..+.++.||..
T Consensus 33 ~Gr~va~~a-~E~vn~WdlRtge~~~~l-~~~~~k~evt~l~~~~d~l--~lAVGYaDGsVqif~~~s~~~~~tfngHK~ 108 (888)
T KOG0306|consen 33 KGRAVAVSA-LEQVNIWDLRTGEIEKKL-ILLKKKAEVTCLRSSDDIL--LLAVGYADGSVQIFSLESEEILITFNGHKA 108 (888)
T ss_pred CCcEEEEec-cccEeEEeeecchhhhhh-hhhcccceEEEeeccCCcc--eEEEEecCceEEeeccCCCceeeeeccccc
Confidence 588887632 345999999999543322 1223446799999888887 899999999999999 88888999999999
Q ss_pred CEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCc
Q 001184 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA 578 (1130)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1130)
.|+.+.|. ..|..|++||.|+.|.+||+-.......+.+|...|+.+-|..+.+++++++. |+.|++||+++..
T Consensus 109 AVt~l~fd--~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sK----Ds~iK~WdL~tqh 182 (888)
T KOG0306|consen 109 AVTTLKFD--KIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSK----DSMIKFWDLETQH 182 (888)
T ss_pred ceEEEEEc--ccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEecc----CceEEEEecccce
Confidence 99999984 56689999999999999999999999999999999999999998999999987 9999999999999
Q ss_pred eeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-------c-----eeEEEeccCCCCCcceEEEcCCCCE
Q 001184 579 LKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNV-------N-----MLTSTEAEGGLPSLPRLRFNKEGNL 646 (1130)
Q Consensus 579 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-------~-----~~~~~~~~~~~~~i~~v~~s~~~~~ 646 (1130)
+..+...|.. .+.++++.+ +.+++++.|+.+++|++... . ...++...+ .+....++..+++++
T Consensus 183 Cf~Thvd~r~-Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqs-k~R~i~l~~d~s~r~ 258 (888)
T KOG0306|consen 183 CFETHVDHRG-EIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQS-KGREINLVTDFSDRF 258 (888)
T ss_pred eeeEEecccc-eEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeeccceeeecc-CCceeEEeecCcccE
Confidence 9999988776 899999986 78999999999999998211 0 111122122 223455667778899
Q ss_pred EEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCC-CCCcccccCCCccc
Q 001184 647 LVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSP-ARPSTILNGADSAA 725 (1130)
Q Consensus 647 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 725 (1130)
+++-+.|..+.++.+....+..+.+........ +... .++..
T Consensus 259 ~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~K----------------------------kka~t~e~~~--------- 301 (888)
T KOG0306|consen 259 LVCQGADKVIELFRIRSKEEIAKILSKKLKRAK----------------------------KKAETEENED--------- 301 (888)
T ss_pred EEEecchhhhhheeecCHHHHHHHHHHHHHHhh----------------------------hhcccccccc---------
Confidence 999999999999998877555444322100000 0000 00000
Q ss_pred cCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeE--EEeeeCCeEEeeecCCC-CCC
Q 001184 726 RGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGI--LALWSNGVQKLWKWNRT-EQN 802 (1130)
Q Consensus 726 ~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l--~~~~~dg~i~iw~~~~~-~~~ 802 (1130)
....+-+..+-.+.+ .....+|.++.+.|.+... ++.-.++++..|.++.. ...
T Consensus 302 --------~v~~sl~~~i~r~~~---------------ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~ 358 (888)
T KOG0306|consen 302 --------DVEKSLSDEIKRLET---------------IRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTS 358 (888)
T ss_pred --------chhhhHHHHHHHHHh---------------eechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCC
Confidence 000000000001111 1145677788887765432 33366788888877651 111
Q ss_pred CCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEeCCeEEEEECCCceeEEEEeCCCCCeEEEEE
Q 001184 803 PSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAF 882 (1130)
Q Consensus 803 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~ 882 (1130)
|...... ..-..+|...|+++++|.|...+++|+.+.|++|+..+.++++++.. +.+.+..|
T Consensus 359 p~~~~~~----------------~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~--~y~l~~~F 420 (888)
T KOG0306|consen 359 PEADRTS----------------NIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITC--GYILASKF 420 (888)
T ss_pred ccccccc----------------eeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEecc--ccEEEEEe
Confidence 1111110 11123799999999999999999999999999999999999999974 48999999
Q ss_pred eCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccce---eeEe-
Q 001184 883 HPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKS---IAIQ- 958 (1130)
Q Consensus 883 sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~---~~~~- 958 (1130)
.| +++++++|...|.+.+||+.+...+.+.++|.+.|++++.+||++.++++|.|.+|++||..--..... ..+.
T Consensus 421 vp-gd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl 499 (888)
T KOG0306|consen 421 VP-GDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSL 499 (888)
T ss_pred cC-CCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeee
Confidence 99 899999999999999999999999999999999999999999999999999999999999764221100 0011
Q ss_pred --ccCCCCCCCeEEEEEcCCCcEEEEE-cCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEE
Q 001184 959 --LPAGKLPVGETRVQFHSDQVRLLVN-HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGV 1035 (1130)
Q Consensus 959 --~~~~~~~~~v~~~~~s~d~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~v 1035 (1130)
...-..+..+.++.+||||++|+++ -|.+++||-+++.+....+.+| .-||.||.+|||+++++|||.|.+|+|
T Consensus 500 ~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGH---kLPV~smDIS~DSklivTgSADKnVKi 576 (888)
T KOG0306|consen 500 KHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGH---KLPVLSMDISPDSKLIVTGSADKNVKI 576 (888)
T ss_pred ccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeeccc---ccceeEEeccCCcCeEEeccCCCceEE
Confidence 1111234789999999999999997 5999999999999999999888 789999999999999999999999999
Q ss_pred EeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCcc
Q 001184 1036 FDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETER 1097 (1130)
Q Consensus 1036 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~~~~~ 1097 (1130)
|-++-|.+...+. +|...++++.|.| ..+++.++|.|+.|+-||-.+-+.
T Consensus 577 WGLdFGDCHKS~f-----------AHdDSvm~V~F~P-~~~~FFt~gKD~kvKqWDg~kFe~ 626 (888)
T KOG0306|consen 577 WGLDFGDCHKSFF-----------AHDDSVMSVQFLP-KTHLFFTCGKDGKVKQWDGEKFEE 626 (888)
T ss_pred eccccchhhhhhh-----------cccCceeEEEEcc-cceeEEEecCcceEEeechhhhhh
Confidence 9999999877764 5667888999999 478999999999999998765443
No 13
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=4.4e-43 Score=372.34 Aligned_cols=610 Identities=14% Similarity=0.198 Sum_probs=410.5
Q ss_pred EEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEe--
Q 001184 351 VSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAF-- 428 (1130)
Q Consensus 351 ~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~-- 428 (1130)
..++-+|... ++|- -....|.+||....+..+ ++..|..+++|++||++|+|+|+|-
T Consensus 41 ~gLa~~p~Sg-l~aY-pAGCvVVlfn~~~~tQ~h-------------------lvnssRk~~t~vAfS~~GryvatGEcG 99 (1080)
T KOG1408|consen 41 NGLASVPCSG-LCAY-PAGCVVVLFNVDSCTQSH-------------------LVNSSRKPLTCVAFSQNGRYVATGECG 99 (1080)
T ss_pred Cccccccccc-ceee-ccCcEEEEEcccccchhh-------------------eecccCcceeEEEEcCCCcEEEecccC
Confidence 4455666554 2332 224589999987655433 5778888999999999999999984
Q ss_pred CCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcC--CCcEEEEecCCCeeeEecCCCcCEEEEeec
Q 001184 429 TKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD--DKLIRVWDLSGRKLFQFEGHEAPVYSVCPH 506 (1130)
Q Consensus 429 ~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~--d~~v~iwd~~~~~~~~~~~h~~~v~~~~~~ 506 (1130)
....++||++.....+. ++..|...|+|++|+|.++ ++++.+. |-.|-+||........-..-...|..++|
T Consensus 100 ~~pa~kVw~la~h~vVA---EfvdHKY~vtcvaFsp~~k--yvvSVGsQHDMIVnv~dWr~N~~~asnkiss~Vsav~f- 173 (1080)
T KOG1408|consen 100 RTPASKVWSLAFHGVVA---EFVDHKYNVTCVAFSPGNK--YVVSVGSQHDMIVNVNDWRVNSSGASNKISSVVSAVAF- 173 (1080)
T ss_pred CCccceeeeeccccchh---hhhhccccceeeeecCCCc--EEEeeccccceEEEhhhhhhcccccccccceeEEEEEE-
Confidence 66789999999876444 6889999999999999999 6777654 66788898322222222234567888888
Q ss_pred ccCCccEEEEEecCCcEEEEEccCCccee---eecCCCccEEEEEE------------ecCCCeEEEeeecCCCCcEEEE
Q 001184 507 QKENIHFIFSTAVDGKIKAWLYDNVGSRV---DYDAPGLWCTTMLY------------SADGSRLFSCGTSKEGDSHLVE 571 (1130)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~---~~~~~~~~v~~~~~------------s~~~~~l~~~~~~~~~~~~i~~ 571 (1130)
+.++.++++.+ ...|++|.++...+.. .+.+...-.-.+.+ ..+..+-++. .|.+.-
T Consensus 174 -sEdgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~------qGhLvE 245 (1080)
T KOG1408|consen 174 -SEDGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITA------QGHLVE 245 (1080)
T ss_pred -ccCCceeeeee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEec------ccceee
Confidence 56778888876 5789999988665222 11111110001111 1111111111 233332
Q ss_pred eeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEecc----------------------
Q 001184 572 WNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAE---------------------- 629 (1130)
Q Consensus 572 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~---------------------- 629 (1130)
+. ..+++..+..-......|++++ .++|++|+.+|.|++|+..+-.-..++...
T Consensus 246 FS--sRRLLDKWVqcRTTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~ 321 (1080)
T KOG1408|consen 246 FS--SRRLLDKWVQCRTTNANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSP 321 (1080)
T ss_pred ec--hhhhhhhhhhhhccccceeeee--cceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCc
Confidence 22 2222222222222245566665 579999999999999998775444333221
Q ss_pred CCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCC
Q 001184 630 GGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRS 709 (1130)
Q Consensus 630 ~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~ 709 (1130)
...+...++.|++....|.+...|..+++||+++..+.-+....
T Consensus 322 a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~------------------------------------ 365 (1080)
T KOG1408|consen 322 AIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSM------------------------------------ 365 (1080)
T ss_pred ccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeee------------------------------------
Confidence 11122347889998999999999999999999775322111000
Q ss_pred CCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCC
Q 001184 710 SPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNG 789 (1130)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg 789 (1130)
.-....+|++....... |... + +.-|.+ .++++++|+
T Consensus 366 ---------------------------lyHS~ciW~Ve~~p~nv------------~~~~--~-aclp~~-cF~TCSsD~ 402 (1080)
T KOG1408|consen 366 ---------------------------LYHSACIWDVENLPCNV------------HSPT--A-ACLPRG-CFTTCSSDG 402 (1080)
T ss_pred ---------------------------eeccceeeeeccccccc------------cCcc--c-ccCCcc-ceeEecCCC
Confidence 00123445544321100 0000 0 001111 255666666
Q ss_pred eEEeeecCCCCCCCC--ccccccc---------ccc-cccCCCCcceecc-CCCCCCCceeEEEEecCCCEEEEEe-CCe
Q 001184 790 VQKLWKWNRTEQNPS--GKATAAV---------APQ-HWQPSNGLLMTND-VPENAEDVVPCVALSKNDSYVMSAG-GGK 855 (1130)
Q Consensus 790 ~i~iw~~~~~~~~~~--~~~~~~~---------~~~-~w~~~~~~~~~~~-~~~~~~~~i~~l~~s~dg~~la~~~-dg~ 855 (1130)
+|++|++........ ..+.... ..+ +.|...+..-... -.-.....++++++||+|++||+|. .|+
T Consensus 403 TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~Gn 482 (1080)
T KOG1408|consen 403 TIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGN 482 (1080)
T ss_pred cEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCc
Confidence 666666554211000 0000000 000 0111111000000 0013567899999999999999999 799
Q ss_pred EEEEECCCceeEEEEeCCCCCeEEEEEeCC--CCcEEEEEeCCCcEEEEEeec-CeEEEEEecCCCCeeEEEEccCC--C
Q 001184 856 VSLFNMMNFKVMTTFMSPPPASTFLAFHPQ--DNNIIAIGMEDSTIQIYNVRV-DEVKTKLKGHQKHITGLAFSTNL--N 930 (1130)
Q Consensus 856 i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~--~~~~lasg~~dg~v~iwd~~~-~~~~~~l~~h~~~V~~l~~s~dg--~ 930 (1130)
++||++...+....++.|..+|.|+.|+.- ..++||+++.|..|+|||+.. ..+++++.+|+..|+++.|.-.| .
T Consensus 483 lrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~ 562 (1080)
T KOG1408|consen 483 LRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNR 562 (1080)
T ss_pred eEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCce
Confidence 999999999999999999999999999852 457999999999999999974 46788999999999999998887 7
Q ss_pred eEEEEeCCCcEEEEECCCCcccceeeEeccCCCC---CCCeEEEEEcCCCcEEEE-EcCCcEEEEECCCceeeeeeecCC
Q 001184 931 ILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKL---PVGETRVQFHSDQVRLLV-NHETQLAIYDGSKMECIRQWVPQD 1006 (1130)
Q Consensus 931 ~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~---~~~v~~~~~s~d~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~ 1006 (1130)
.++++|.|+.|++--....... ...+.+++ ...+..++..|..+++++ +.|+.|+||++..|+..+.|.+.+
T Consensus 563 ~MiscGADksimFr~~qk~~~g----~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~ 638 (1080)
T KOG1408|consen 563 KMISCGADKSIMFRVNQKASSG----RLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSR 638 (1080)
T ss_pred EEEeccCchhhheehhccccCc----eeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccc
Confidence 8999999998766443321111 11122221 156788999999999888 789999999999999999999999
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCc
Q 001184 1007 VLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGS 1086 (1130)
Q Consensus 1007 ~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~ 1086 (1130)
.|.+...-+...|.|-|||+.+.|+++.++|+-+|++.++.. ||+..++.+.|.+ |-..|++.+.||.
T Consensus 639 ~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~-----------GHsE~VTG~kF~n-DCkHlISvsgDgC 706 (1080)
T KOG1408|consen 639 DHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMT-----------GHSEAVTGVKFLN-DCKHLISVSGDGC 706 (1080)
T ss_pred cCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhc-----------Ccchheeeeeecc-cchhheeecCCce
Confidence 988888899999999999999999999999999999998886 5667788899998 4678999999999
Q ss_pred EEEEeCCC
Q 001184 1087 VKVIEPSE 1094 (1130)
Q Consensus 1087 v~vW~~~~ 1094 (1130)
|+||.++.
T Consensus 707 IFvW~lp~ 714 (1080)
T KOG1408|consen 707 IFVWKLPL 714 (1080)
T ss_pred EEEEECch
Confidence 99999974
No 14
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.9e-40 Score=338.07 Aligned_cols=301 Identities=20% Similarity=0.322 Sum_probs=256.6
Q ss_pred cceeeeccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeee-ec----CCCccE
Q 001184 338 RAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAI-VK----DSSISV 412 (1130)
Q Consensus 338 ~~~~~~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~h~~~V 412 (1130)
....+.+.|+.+|.+++|+|-..-++++|+.|-..++|++....-..... ..+++.+ +. .....|
T Consensus 169 ~~~~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q----------~~lrh~~~~~~~s~~~nkdV 238 (524)
T KOG0273|consen 169 SSKAKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQ----------LVLRHCIREGGKSVPSNKDV 238 (524)
T ss_pred ccceeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchh----------hhhhhhhhhhcccCCccCCc
Confidence 34555667999999999999877679999999999999987411111000 0000000 11 123579
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeee
Q 001184 413 SRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLF 491 (1130)
Q Consensus 413 ~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~ 491 (1130)
++++|+.+|..||+|+.||.+++|+..++. +. ++..|.++|.++.|+.+|. +|++++.|+++.+|| .+|....
T Consensus 239 T~L~Wn~~G~~LatG~~~G~~riw~~~G~l-~~---tl~~HkgPI~slKWnk~G~--yilS~~vD~ttilwd~~~g~~~q 312 (524)
T KOG0273|consen 239 TSLDWNNDGTLLATGSEDGEARIWNKDGNL-IS---TLGQHKGPIFSLKWNKKGT--YILSGGVDGTTILWDAHTGTVKQ 312 (524)
T ss_pred ceEEecCCCCeEEEeecCcEEEEEecCchh-hh---hhhccCCceEEEEEcCCCC--EEEeccCCccEEEEeccCceEEE
Confidence 999999999999999999999999987753 32 6888999999999999999 899999999999999 8999999
Q ss_pred EecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEE
Q 001184 492 QFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVE 571 (1130)
Q Consensus 492 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1130)
.+.-|..+-..+.|.. ...+++.+.|+.|+++.+....+..++.+|..+|.++.|+|.|.+|++++. |++++|
T Consensus 313 ~f~~~s~~~lDVdW~~---~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~Sd----D~Tlki 385 (524)
T KOG0273|consen 313 QFEFHSAPALDVDWQS---NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSD----DGTLKI 385 (524)
T ss_pred eeeeccCCccceEEec---CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecC----CCeeEe
Confidence 9999999877777743 257999999999999999999999999999999999999999999999986 999999
Q ss_pred eeCCCCceeEEEecccCceeEEEEEcCCCC---------EEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcC
Q 001184 572 WNESEGALKRTYIGFRKKSAGVVQFDTTRN---------RILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK 642 (1130)
Q Consensus 572 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~---------~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~ 642 (1130)
|..........+.+|.. .|..+.|+|+|. .+++++.|++|++||+..+.++..+..|.. +|++++|+|
T Consensus 386 Ws~~~~~~~~~l~~Hsk-ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~--pVysvafS~ 462 (524)
T KOG0273|consen 386 WSMGQSNSVHDLQAHSK-EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQE--PVYSVAFSP 462 (524)
T ss_pred eecCCCcchhhhhhhcc-ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCC--ceEEEEecC
Confidence 99999989999999877 788889999763 789999999999999999999999876655 899999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCC
Q 001184 643 EGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 643 ~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
+|+++|+|+.||.|.+|+..++
T Consensus 463 ~g~ylAsGs~dg~V~iws~~~~ 484 (524)
T KOG0273|consen 463 NGRYLASGSLDGCVHIWSTKTG 484 (524)
T ss_pred CCcEEEecCCCCeeEeccccch
Confidence 9999999999999999998776
No 15
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=1.8e-37 Score=337.44 Aligned_cols=584 Identities=15% Similarity=0.170 Sum_probs=438.6
Q ss_pred EEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeCCCe
Q 001184 353 MDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHL 432 (1130)
Q Consensus 353 v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~~ 432 (1130)
..|..-|..++++.+.+.++.+||.+.-..+. +-+.+...|+|++=..+--|.|+| ..
T Consensus 39 ~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~-------------------vs~~lp~~I~alas~~~~vy~A~g---~~ 96 (910)
T KOG1539|consen 39 FRVVALGSTFYVTTCVGKSFQVYDVNKLNLLF-------------------VSKPLPDKITALASDKDYVYVASG---NK 96 (910)
T ss_pred eeeeecCceEEEEEecCceEEEEeccceEEEE-------------------ecCCCCCceEEEEecCceEEEecC---cE
Confidence 66666677788999999999999998776664 234677889999877665444443 34
Q ss_pred EEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCC-Ce----eeEecCCCcCEEEEeec
Q 001184 433 IHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSG-RK----LFQFEGHEAPVYSVCPH 506 (1130)
Q Consensus 433 i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~-~~----~~~~~~h~~~v~~~~~~ 506 (1130)
|.+|. .|+.++ ..+.+|.+.|.-+.-- |. .++++..++.+.||+ ..+ .. +..++...+.|+++. |
T Consensus 97 i~~~~--rgk~i~--~~~~~~~a~v~~l~~f--Ge--~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-H 167 (910)
T KOG1539|consen 97 IYAYA--RGKHIR--HTTLLHGAKVHLLLPF--GE--HLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-H 167 (910)
T ss_pred EEEEE--ccceEE--EEeccccceEEEEeee--cc--eEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-c
Confidence 66664 344343 3466777777766543 55 689999999999999 442 11 112223333377775 6
Q ss_pred ccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecc
Q 001184 507 QKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGF 586 (1130)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 586 (1130)
|+.--+.++.|+.+|.+.+|++++++.+.++......|+++.-+|-=..++.|.. +|+|.+++++.++.+.+|+..
T Consensus 168 P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~----~G~ViifNlK~dkil~sFk~d 243 (910)
T KOG1539|consen 168 PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLE----NGTVIIFNLKFDKILMSFKQD 243 (910)
T ss_pred chhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEecc----CceEEEEEcccCcEEEEEEcc
Confidence 7766678999999999999999999999999999999999999998888998875 999999999999999999864
Q ss_pred cCceeEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 001184 587 RKKSAGVVQFDTTRN-RILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGL 665 (1130)
Q Consensus 587 ~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~ 665 (1130)
.+.|+.++|..||+ .+++|+..|.+-+||++..+.+..+.. .|.+.+....|-|....+++++.|+.+++|-.+++.
T Consensus 244 -~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~n-ah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~d 321 (910)
T KOG1539|consen 244 -WGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRN-AHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGD 321 (910)
T ss_pred -ccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeec-cccCCcccceecCCCceEeeccCCCceeEEEeeCCC
Confidence 45899999999997 555677779999999999888777652 223478999999999999999999999999776542
Q ss_pred hhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCcccee
Q 001184 666 RALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWE 745 (1130)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~ 745 (1130)
...+.+.
T Consensus 322 g~pR~LR------------------------------------------------------------------------- 328 (910)
T KOG1539|consen 322 GVPRLLR------------------------------------------------------------------------- 328 (910)
T ss_pred Ccchhee-------------------------------------------------------------------------
Confidence 1111110
Q ss_pred eccccCCcceeEEEecCCCCCccceEEEEEe-ccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcce
Q 001184 746 LTEIVDPLQCRVVAMPESTDSASKVARLLYT-NSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLM 824 (1130)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 824 (1130)
...+|..+..++.|- .+|..+..++.|++++.+++....++..-.. ......++..
T Consensus 329 ----------------~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~-------~~~~~~~kk~ 385 (910)
T KOG1539|consen 329 ----------------SRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQ-------LHNKKRAKKV 385 (910)
T ss_pred ----------------eccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcc-------cccccccccc
Confidence 013477777777776 6788899999999988887655433221110 1111111111
Q ss_pred ecc-CCCCCCCceeEEEEecC-----CCEEEEE-eCCeEEEEECCCcee-EEEEe-----CCCCCeEEEEEeCCCCcEEE
Q 001184 825 TND-VPENAEDVVPCVALSKN-----DSYVMSA-GGGKVSLFNMMNFKV-MTTFM-----SPPPASTFLAFHPQDNNIIA 891 (1130)
Q Consensus 825 ~~~-~~~~~~~~i~~l~~s~d-----g~~la~~-~dg~i~iwd~~~~~~-~~~~~-----~~~~~i~~l~~sp~~~~~la 891 (1130)
... ...-.-.+|..+++... ...+++. ++...+.|+...... ...+. .....+++++.++ .|++.+
T Consensus 386 ~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~ 464 (910)
T KOG1539|consen 386 NVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVF 464 (910)
T ss_pred cccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEE
Confidence 000 00012345666666432 2233333 257799999987654 22232 2336799999999 999999
Q ss_pred EEeCCCcEEEEEeecCeEEEEE---ecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCe
Q 001184 892 IGMEDSTIQIYNVRVDEVKTKL---KGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGE 968 (1130)
Q Consensus 892 sg~~dg~v~iwd~~~~~~~~~l---~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v 968 (1130)
.|+..|.|-+|++++|-....+ +.|.++|++++...-++.+++++.+|-+++||.+........ .....+
T Consensus 465 IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l-------~l~~~~ 537 (910)
T KOG1539|consen 465 IGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSL-------RLGSSI 537 (910)
T ss_pred EeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeee-------ccCCCc
Confidence 9999999999999999988888 589999999999888899999999999999999985522221 122677
Q ss_pred EEEEEcCCCcEEEE-EcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCccccccc
Q 001184 969 TRVQFHSDQVRLLV-NHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRI 1047 (1130)
Q Consensus 969 ~~~~~s~d~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~ 1047 (1130)
..+..+.....+++ .+|-.|+++|..+.+.++.+.+| ...|++++|||||++|++++.|++||+||+.++.++..+
T Consensus 538 ~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh---~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~ 614 (910)
T KOG1539|consen 538 TGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGH---GNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGL 614 (910)
T ss_pred ceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhcc---ccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeE
Confidence 88888888777776 67889999999999999999888 789999999999999999999999999999999998777
Q ss_pred CCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCC-CcEEEEeCC
Q 001184 1048 APSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTD-GSVKVIEPS 1093 (1130)
Q Consensus 1048 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D-g~v~vW~~~ 1093 (1130)
... ..++.+.|+|+ +++|+|+..| .-|.+|.=.
T Consensus 615 ~vd------------~~~~sls~SPn-gD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 615 LVD------------SPCTSLSFSPN-GDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred ecC------------CcceeeEECCC-CCEEEEEEecCceEEEEEch
Confidence 532 34677999995 8999999998 569999743
No 16
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=3.8e-38 Score=335.90 Aligned_cols=603 Identities=15% Similarity=0.208 Sum_probs=404.6
Q ss_pred ccccCCCCCcccccCCcccceeeec-cCCCCEEEEEEecCCC--eEEEEEeCcCeEEEEeCCCCceeecccceeeecccc
Q 001184 320 ATYPVPSQQATWSLDDLPRAVACTM-HQGSSVVSMDFHPFHH--TLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNC 396 (1130)
Q Consensus 320 ~~~s~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~fspdg~--~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 396 (1130)
++|.....++++.+... .+...+ +|..+|+|+.|-|+.+ -.+++|+.|+.|++|.++....+..
T Consensus 28 vafGa~~~Iav~dp~k~--~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i----------- 94 (764)
T KOG1063|consen 28 VAFGAGPAIAVADPEKI--LIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKI----------- 94 (764)
T ss_pred EEecCCceEEEeCcccc--eeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEE-----------
Confidence 66666666777766654 344444 6999999999999886 1389999999999999984333321
Q ss_pred ccceeeeeecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccc-eeeeeeecCCCCeeEEEEecCCCceEEEEEc
Q 001184 397 SMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDL-CQSLEIDAHVGGVNDLAFSYPNKQLCIVTCG 475 (1130)
Q Consensus 397 ~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~-~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s 475 (1130)
..+.+|... +++++.......+...|+++.+||.+..+.. .....+..-..--.|+++.++.+..+++.|+
T Consensus 95 ------~~~~g~~~~--~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Gg 166 (764)
T KOG1063|consen 95 ------YTIQGHCKE--CVCVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGG 166 (764)
T ss_pred ------EeecCccee--EEEEEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecC
Confidence 134566544 4455544334444478999999999554411 1111122222234567777855555777888
Q ss_pred CCCcEEEEe-cCC--CeeeEecCCCcCEEEEeecccCC-ccEEEEEecCCcEEEEEccCCc-------------------
Q 001184 476 DDKLIRVWD-LSG--RKLFQFEGHEAPVYSVCPHQKEN-IHFIFSTAVDGKIKAWLYDNVG------------------- 532 (1130)
Q Consensus 476 ~d~~v~iwd-~~~--~~~~~~~~h~~~v~~~~~~~~~~-~~~l~s~s~dg~i~vwd~~~~~------------------- 532 (1130)
.+..|.++. ..+ +.+..+.||.+.|.+++|..... .-+|+++|.|..||+|.+.-..
T Consensus 167 s~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~ 246 (764)
T KOG1063|consen 167 SKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPV 246 (764)
T ss_pred cceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCce
Confidence 888888888 433 45678899999999999975544 5688999999999999765332
Q ss_pred -----ce-------eeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCC--ceeEEEe----cccCceeEEE
Q 001184 533 -----SR-------VDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG--ALKRTYI----GFRKKSAGVV 594 (1130)
Q Consensus 533 -----~~-------~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~--~~~~~~~----~~~~~~v~~~ 594 (1130)
.. ..+.+|..+|+++.|.|.+..|++++. |.++.+|...+. --+.... ++........
T Consensus 247 f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASa----DksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~ 322 (764)
T KOG1063|consen 247 FMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASA----DKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGG 322 (764)
T ss_pred eeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheeccc----CcceEEEecCCccceEEEEEEeecccccccceeeE
Confidence 00 013478889999999999999999886 899999987554 2222211 2233356778
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCC-CCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcc
Q 001184 595 QFDTTRNRILAAGEDNQIKFWDMD-NVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIET 673 (1130)
Q Consensus 595 ~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 673 (1130)
.|+|+++.+++-+..|..++|... ...........+|...|..++|+|.|.+|.+.+.|.+-|++---..+.....+
T Consensus 323 lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEi-- 400 (764)
T KOG1063|consen 323 LWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEI-- 400 (764)
T ss_pred EEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeee--
Confidence 899999999999999999999833 33344444445677799999999999999999999999998643111111111
Q ss_pred cccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCc
Q 001184 674 RAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPL 753 (1130)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~ 753 (1130)
.++
T Consensus 401 -----aRP------------------------------------------------------------------------ 403 (764)
T KOG1063|consen 401 -----ARP------------------------------------------------------------------------ 403 (764)
T ss_pred -----ccc------------------------------------------------------------------------
Confidence 000
Q ss_pred ceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCC----------------CCCC--------------
Q 001184 754 QCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRT----------------EQNP-------------- 803 (1130)
Q Consensus 754 ~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~----------------~~~~-------------- 803 (1130)
+.|...++++++-+....++++.....+|+|+.... ...+
T Consensus 404 ----------QiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa 473 (764)
T KOG1063|consen 404 ----------QIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKA 473 (764)
T ss_pred ----------ccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCC
Confidence 113333333444333333333333344444433221 0000
Q ss_pred -------Cccc--------ccccccccccCCCCc-ceecc------CCCCCCCceeEEEEecCCCEEEEEe-C-----Ce
Q 001184 804 -------SGKA--------TAAVAPQHWQPSNGL-LMTND------VPENAEDVVPCVALSKNDSYVMSAG-G-----GK 855 (1130)
Q Consensus 804 -------~~~~--------~~~~~~~~w~~~~~~-~~~~~------~~~~~~~~i~~l~~s~dg~~la~~~-d-----g~ 855 (1130)
.|.. .......+..+.... +.... ..-+|...|.+++.+|+|+++|+++ . ..
T Consensus 474 ~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAv 553 (764)
T KOG1063|consen 474 FFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAV 553 (764)
T ss_pred CcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceE
Confidence 0000 000000111111111 11110 0118999999999999999999986 1 34
Q ss_pred EEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeE----EEEEecCCCCeeEEEEccCCCe
Q 001184 856 VSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEV----KTKLKGHQKHITGLAFSTNLNI 931 (1130)
Q Consensus 856 i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~----~~~l~~h~~~V~~l~~s~dg~~ 931 (1130)
|++|+..+...+..+.+|.-.|+.++||| |+++|++.+.|+++.+|....... ....+.|+.-|++..|+||+.+
T Consensus 554 I~lw~t~~W~~~~~L~~HsLTVT~l~FSp-dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~ 632 (764)
T KOG1063|consen 554 IRLWNTANWLQVQELEGHSLTVTRLAFSP-DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKY 632 (764)
T ss_pred EEEEeccchhhhheecccceEEEEEEECC-CCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccce
Confidence 99999999999999999999999999999 899999999999999999864421 2347789999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCC----Cc-EEEEE-cCCcEEEEECC---------Cc
Q 001184 932 LVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSD----QV-RLLVN-HETQLAIYDGS---------KM 996 (1130)
Q Consensus 932 L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d----~~-~l~~~-~d~~i~v~d~~---------~~ 996 (1130)
++|+|.|++|++|........... +.........++.+++.|- .. .++++ ..|.|.+|... +.
T Consensus 633 FaTaSRDK~VkVW~~~~~~d~~i~--~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~ 710 (764)
T KOG1063|consen 633 FATASRDKKVKVWEEPDLRDKYIS--RFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTF 710 (764)
T ss_pred eEEecCCceEEEEeccCchhhhhh--hhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceee
Confidence 999999999999999886311111 1122233478888888762 23 45555 58999999855 12
Q ss_pred eeeeeeecCCCCCCCeEEEEECCC----------CCEEEEEeCCCcEEEEeCC
Q 001184 997 ECIRQWVPQDVLSSPISSAAYSCN----------SQLIYATFTDGSIGVFDAD 1039 (1130)
Q Consensus 997 ~~~~~~~~~~~~~~~v~~v~~s~d----------g~~l~t~~~Dg~i~vwd~~ 1039 (1130)
.....+....+|...|+.++|+|- ...|++|++|..+|++++.
T Consensus 711 ~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 711 NLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred eeccccccccChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 223334445566789999999974 2367999999999999874
No 17
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=3.4e-37 Score=328.60 Aligned_cols=595 Identities=15% Similarity=0.193 Sum_probs=413.6
Q ss_pred EEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCC---EEEEEeC
Q 001184 353 MDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN---FIGVAFT 429 (1130)
Q Consensus 353 v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~---~las~~~ 429 (1130)
..|.|.+ ++|.|. ...|.+||..+..... .+.||.++|+|+.|-|+.+ ++++|+.
T Consensus 20 ~sw~~~~--~vafGa-~~~Iav~dp~k~~i~t-------------------~l~GH~a~VnC~~~l~~s~~~a~~vsG~s 77 (764)
T KOG1063|consen 20 SSWGPGG--LVAFGA-GPAIAVADPEKILIVT-------------------TLDGHVARVNCVHWLPTSEIVAEMVSGDS 77 (764)
T ss_pred ccccccc--eEEecC-CceEEEeCcccceeEE-------------------eccCCccceEEEEEcccccccceEEEccC
Confidence 3456665 356554 5689999987653322 5889999999999999888 8999999
Q ss_pred CCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCe---eeEecCCCcCE--EEEe
Q 001184 430 KHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRK---LFQFEGHEAPV--YSVC 504 (1130)
Q Consensus 430 d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~---~~~~~~h~~~v--~~~~ 504 (1130)
|+.|++|.++. +.+.....+.+|...+.+ +..... .....+.|+++.+||..+.. ...+.-..+.+ .|++
T Consensus 78 D~~v~lW~l~~-~~~~~i~~~~g~~~~~~c--v~a~~~--~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~ 152 (764)
T KOG1063|consen 78 DGRVILWKLRD-EYLIKIYTIQGHCKECVC--VVARSS--VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLA 152 (764)
T ss_pred CCcEEEEEEee-hheEEEEeecCcceeEEE--EEeeee--EEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHh
Confidence 99999999984 335556677877655544 443322 22223789999999954433 22232222233 3444
Q ss_pred ecccCCccEEEEEecCCcEEEEEccCC--cceeeecCCCccEEEEEEecCCC---eEEEeeecCCCCcEEEEeeCCCCc-
Q 001184 505 PHQKENIHFIFSTAVDGKIKAWLYDNV--GSRVDYDAPGLWCTTMLYSADGS---RLFSCGTSKEGDSHLVEWNESEGA- 578 (1130)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~vwd~~~~--~~~~~~~~~~~~v~~~~~s~~~~---~l~~~~~~~~~~~~i~~wd~~~~~- 578 (1130)
+.+.++.-+++.|+.+..|.++.-... .....+.+|..+|.+++|...+. +|++++. |..|++|.+.-+.
T Consensus 153 ~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQ----D~yIRiW~i~~~~~ 228 (764)
T KOG1063|consen 153 ALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQ----DRYIRIWRIVLGDD 228 (764)
T ss_pred hhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCC----ceEEEEEEEEecCC
Confidence 555444445667777788888855432 34557899999999999987555 4555553 8999999864322
Q ss_pred --------------------eeEE----------EecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc--eeEEE
Q 001184 579 --------------------LKRT----------YIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVN--MLTST 626 (1130)
Q Consensus 579 --------------------~~~~----------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~ 626 (1130)
.... +.||.+ .|.++.|+|.+..|++++.|.++.+|...... -+...
T Consensus 229 ~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeD-WV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~v 307 (764)
T KOG1063|consen 229 EDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHED-WVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVV 307 (764)
T ss_pred ccccccccccccccCCceeeeeeeEEEEEehhhhhcCccc-ceEEEEEccchhhheecccCcceEEEecCCccceEEEEE
Confidence 1111 236655 89999999999999999999999999876542 22222
Q ss_pred ec---cCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccc
Q 001184 627 EA---EGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKA 703 (1130)
Q Consensus 627 ~~---~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~ 703 (1130)
.. .+.......+.|+|+++.+++-+..|..++|...+.
T Consensus 308 RlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~--------------------------------------- 348 (764)
T KOG1063|consen 308 RLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDK--------------------------------------- 348 (764)
T ss_pred EeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCc---------------------------------------
Confidence 21 122335788999999999999999999999983221
Q ss_pred cccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEE
Q 001184 704 ERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGIL 783 (1130)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~ 783 (1130)
..|... +...+|...|..++|.|.|.+++
T Consensus 349 --------------------------------------~~w~~~-------------~~iSGH~~~V~dv~W~psGeflL 377 (764)
T KOG1063|consen 349 --------------------------------------TFWTQE-------------PVISGHVDGVKDVDWDPSGEFLL 377 (764)
T ss_pred --------------------------------------cceeec-------------cccccccccceeeeecCCCCEEE
Confidence 011110 11145889999999999999999
Q ss_pred EeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEeC-CeEEEEECC
Q 001184 784 ALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGG-GKVSLFNMM 862 (1130)
Q Consensus 784 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~d-g~i~iwd~~ 862 (1130)
+++.|.+-|+|---. + .+-|. ..-.+.-|...++|+++-+....+++|.| ..+|+|+..
T Consensus 378 svs~DQTTRlFa~wg-------~------q~~wH-------EiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aP 437 (764)
T KOG1063|consen 378 SVSLDQTTRLFARWG-------R------QQEWH-------EIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAP 437 (764)
T ss_pred Eeccccceeeecccc-------c------cccee-------eecccccccccceeeehccCCceeeecccceeeeeecCc
Confidence 999999999873210 0 00011 11122358889999999886566667664 668888764
Q ss_pred -------------------------------------------Cce---------------------------------e
Q 001184 863 -------------------------------------------NFK---------------------------------V 866 (1130)
Q Consensus 863 -------------------------------------------~~~---------------------------------~ 866 (1130)
+|. .
T Consensus 438 k~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPE 517 (764)
T KOG1063|consen 438 KSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPE 517 (764)
T ss_pred HHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchh
Confidence 000 0
Q ss_pred EEEEeCCCCCeEEEEEeCCCCcEEEEEeCCC-----cEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcE
Q 001184 867 MTTFMSPPPASTFLAFHPQDNNIIAIGMEDS-----TIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQL 941 (1130)
Q Consensus 867 ~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg-----~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i 941 (1130)
+..+.+|...|.+++.+| +++++|+++... .|++|+..+...++.+.+|+-.|+.|+|||||++|++++.|.++
T Consensus 518 v~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~ 596 (764)
T KOG1063|consen 518 VHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTV 596 (764)
T ss_pred hHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceE
Confidence 122346788899999999 999999998654 59999999999899999999999999999999999999999999
Q ss_pred EEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEE-EcCCcEEEEECCCc--eeeeeeecCCCCCCCeEEEEEC
Q 001184 942 IFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV-NHETQLAIYDGSKM--ECIRQWVPQDVLSSPISSAAYS 1018 (1130)
Q Consensus 942 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~d~~i~v~d~~~~--~~~~~~~~~~~~~~~v~~v~~s 1018 (1130)
.+|........... ... ...|..-|....|+|++.++++ +.|++|.+|..... +.+..+.. ..++.+|++++|.
T Consensus 597 sl~~~~~~~~~e~~-fa~-~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~-~~~~~aVTAv~~~ 673 (764)
T KOG1063|consen 597 SLYEVQEDIKDEFR-FAC-LKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFAC-LKFSLAVTAVAYL 673 (764)
T ss_pred Eeeeeecccchhhh-hcc-ccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhch-hccCCceeeEEee
Confidence 99998654332222 111 2223356888999999998887 68999999999887 55555422 2347899999998
Q ss_pred C-----CCCEEEEEeCCCcEEEEeCCCcccccccCCCcccc-cCCCCCceeeeEEEEEcCC---------CCCEEEEEeC
Q 001184 1019 C-----NSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMS-QASPNSQTVFPLVVTSHPQ---------EPNQLAVGLT 1083 (1130)
Q Consensus 1019 ~-----dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---------~~~~l~s~~~ 1083 (1130)
| .+..+++|-+.|.|.+|....-..........+.. .....++...+..++|.|. +...|++|++
T Consensus 674 ~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~ 753 (764)
T KOG1063|consen 674 PVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGD 753 (764)
T ss_pred ccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecc
Confidence 7 22377888899999999865222111111111111 0111234455667888875 2346799999
Q ss_pred CCcEEEEeCC
Q 001184 1084 DGSVKVIEPS 1093 (1130)
Q Consensus 1084 Dg~v~vW~~~ 1093 (1130)
|..++++++.
T Consensus 754 D~~vri~nv~ 763 (764)
T KOG1063|consen 754 DESVRIFNVD 763 (764)
T ss_pred cceeEEeecc
Confidence 9999999875
No 18
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.1e-40 Score=333.38 Aligned_cols=283 Identities=17% Similarity=0.260 Sum_probs=264.3
Q ss_pred ccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCC--C
Q 001184 344 MHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD--G 421 (1130)
Q Consensus 344 ~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd--g 421 (1130)
++...+|..+.||+|++ +||||+-+|.++||+..++..+. ++.||.+.|.++.|+|. +
T Consensus 172 ~gd~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~-------------------~l~gH~~~v~~~~fhP~~~~ 231 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQ-------------------TLRGHTSRVGAAVFHPVDSD 231 (459)
T ss_pred ccCCCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeE-------------------EEeccccceeeEEEccCCCc
Confidence 45778999999999998 69999999999999999886654 68899999999999996 6
Q ss_pred CEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCE
Q 001184 422 NFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPV 500 (1130)
Q Consensus 422 ~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v 500 (1130)
..+|+|+.||++++|++.+...+. .+.+|...|..++|+|+|+ +|+|++.|.+-++|| .++..+....||...|
T Consensus 232 ~~lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v 306 (459)
T KOG0272|consen 232 LNLATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKSELLLQEGHSKGV 306 (459)
T ss_pred cceeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCc--eeeecccccchhhcccccchhhHhhccccccc
Confidence 799999999999999999876555 6899999999999999999 899999999999999 8888888999999999
Q ss_pred EEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCcee
Q 001184 501 YSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALK 580 (1130)
Q Consensus 501 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1130)
.+++|++ ||.+++||+.|..-+|||++++.+++.+.+|..+|.+|.|+|+|..|++|+. |++++|||++..+.+
T Consensus 307 ~~iaf~~--DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~----Dnt~kVWDLR~r~~l 380 (459)
T KOG0272|consen 307 FSIAFQP--DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSS----DNTCKVWDLRMRSEL 380 (459)
T ss_pred ceeEecC--CCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCC----CCcEEEeeecccccc
Confidence 9999965 5689999999999999999999999999999999999999999999999986 999999999999999
Q ss_pred EEEecccCceeEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEE
Q 001184 581 RTYIGFRKKSAGVVQFDT-TRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKIL 659 (1130)
Q Consensus 581 ~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw 659 (1130)
.++.+|.+ .|..|+|+| .|.+|++++.|++++||...+..+++++.+|.. .|.++.+++|+.++++++.|+++++|
T Consensus 381 y~ipAH~n-lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~--kV~s~Dis~d~~~i~t~s~DRT~KLW 457 (459)
T KOG0272|consen 381 YTIPAHSN-LVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEG--KVISLDISPDSQAIATSSFDRTIKLW 457 (459)
T ss_pred eecccccc-hhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCcc--ceEEEEeccCCceEEEeccCceeeec
Confidence 99999877 899999998 678999999999999999999999999988766 89999999999999999999999999
Q ss_pred E
Q 001184 660 A 660 (1130)
Q Consensus 660 ~ 660 (1130)
.
T Consensus 458 ~ 458 (459)
T KOG0272|consen 458 R 458 (459)
T ss_pred c
Confidence 5
No 19
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=3.4e-38 Score=335.30 Aligned_cols=594 Identities=13% Similarity=0.174 Sum_probs=387.2
Q ss_pred ccccCCCCCcccccCCcccceeeecc-CCCCEEEEEEecCCCeEEEEEe--CcCeEEEEeCCCCceeecccceeeecccc
Q 001184 320 ATYPVPSQQATWSLDDLPRAVACTMH-QGSSVVSMDFHPFHHTLLVVGC--GDGEITLWDVGLRERLVSKPFKIWDMSNC 396 (1130)
Q Consensus 320 ~~~s~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~v~fspdg~~llasg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 396 (1130)
++|+++..++.+.++.-+. .+.+. |...++|+||||+|+| +|+|- ....++||++.....+.
T Consensus 52 ~aYpAGCvVVlfn~~~~tQ--~hlvnssRk~~t~vAfS~~Gry-vatGEcG~~pa~kVw~la~h~vVA------------ 116 (1080)
T KOG1408|consen 52 CAYPAGCVVVLFNVDSCTQ--SHLVNSSRKPLTCVAFSQNGRY-VATGECGRTPASKVWSLAFHGVVA------------ 116 (1080)
T ss_pred eeeccCcEEEEEcccccch--hheecccCcceeEEEEcCCCcE-EEecccCCCccceeeeeccccchh------------
Confidence 5666666677777765332 33333 7779999999999995 89885 55679999998877655
Q ss_pred ccceeeeeecCCCccEEEEEEcCCCCEEEEEeC--CCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEE
Q 001184 397 SMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFT--KHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTC 474 (1130)
Q Consensus 397 ~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~--d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~ 474 (1130)
.+..|+-.|+|++|+|.++|+++.+. |-.|.+||.+...... -..-...|.+++|+.||. +++|.
T Consensus 117 -------EfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~~a----snkiss~Vsav~fsEdgS--YfvT~ 183 (1080)
T KOG1408|consen 117 -------EFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSSGA----SNKISSVVSAVAFSEDGS--YFVTS 183 (1080)
T ss_pred -------hhhhccccceeeeecCCCcEEEeeccccceEEEhhhhhhccccc----ccccceeEEEEEEccCCc--eeeee
Confidence 36689999999999999999998765 4577889876543222 223456799999999999 78887
Q ss_pred cCCCcEEEEecCCCe-ee---EecCCCcCEEEEeecccCCccEEEEE-------------ecCCcEEEEEccCCcceeee
Q 001184 475 GDDKLIRVWDLSGRK-LF---QFEGHEAPVYSVCPHQKENIHFIFST-------------AVDGKIKAWLYDNVGSRVDY 537 (1130)
Q Consensus 475 s~d~~v~iwd~~~~~-~~---~~~~h~~~v~~~~~~~~~~~~~l~s~-------------s~dg~i~vwd~~~~~~~~~~ 537 (1130)
+ ...|++|.+.+.. .. .|.+...-.-.+.+ ..+++.+ +..|.+.-|.-+..-... .
T Consensus 184 g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~-----n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKW-V 256 (1080)
T KOG1408|consen 184 G-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRF-----NEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKW-V 256 (1080)
T ss_pred e-eeeEEEEEeeccccccCCccccchhhhcccccc-----chhhhhhhcCcccccceEEEecccceeeechhhhhhhh-h
Confidence 6 5789999943332 11 11121111111111 0112211 122333222111000000 0
Q ss_pred cCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEeccc--------------------C---ceeEEE
Q 001184 538 DAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFR--------------------K---KSAGVV 594 (1130)
Q Consensus 538 ~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~--------------------~---~~v~~~ 594 (1130)
.......+|++.+ .++++++.. +|.|++++..+-....++...+ . ...-++
T Consensus 257 qcRTTnAnCIcVs--~r~I~cgCa----~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~ 330 (1080)
T KOG1408|consen 257 QCRTTNANCICVS--SRLIACGCA----KGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIAC 330 (1080)
T ss_pred hhhccccceeeee--cceEEEeec----cceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEE
Confidence 0112223455554 568888876 9999999987755443332111 0 022347
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCceeEEE-eccCCCCCcceEEEcC------C-----CCEEEEEeCCCcEEEEEcC
Q 001184 595 QFDTTRNRILAAGEDNQIKFWDMDNVNMLTST-EAEGGLPSLPRLRFNK------E-----GNLLVVTTADQGIKILANA 662 (1130)
Q Consensus 595 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~i~~v~~s~------~-----~~~l~~~~~dg~i~iw~~~ 662 (1130)
.|++....+.+.-.|..++|||++.-+.+... ..-.|...|+.+.--| . ...+.+++.|++||+|+++
T Consensus 331 ~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~ 410 (1080)
T KOG1408|consen 331 QFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLA 410 (1080)
T ss_pred EecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecc
Confidence 78988899999999999999999875433221 1111222333333222 0 2358899999999999987
Q ss_pred CCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCcc
Q 001184 663 DGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTK 742 (1130)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 742 (1130)
....- ..+..+ -++.+..+.-- .....+++- |...-
T Consensus 411 ~ctnn-~vyrRN--------------------ils~~l~ki~y-----~d~~~q~~~------------------d~~~~ 446 (1080)
T KOG1408|consen 411 FCTNN-QVYRRN--------------------ILSANLSKIPY-----EDSTQQIMH------------------DASAG 446 (1080)
T ss_pred ccccc-ceeecc--------------------cchhhhhcCcc-----ccCchhhhh------------------hccCC
Confidence 63110 010000 00111000000 000000000 00000
Q ss_pred ceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCc
Q 001184 743 PWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGL 822 (1130)
Q Consensus 743 ~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 822 (1130)
+++-.. .. .-+....+.+++++|+|+.|++|..-|++++|++..-..
T Consensus 447 ~fdka~---------~s---~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~--------------------- 493 (1080)
T KOG1408|consen 447 IFDKAL---------VS---TCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY--------------------- 493 (1080)
T ss_pred cccccc---------hh---hcCcccceEEEEECCCcceecccCccCceEEEEehhhhh---------------------
Confidence 111000 00 012456789999999999999999999999998754211
Q ss_pred ceeccCCCCCCCceeEEEEec---CCCEEEEEe-CCeEEEEECCC-ceeEEEEeCCCCCeEEEEEeCCCC-cEEEEEeCC
Q 001184 823 LMTNDVPENAEDVVPCVALSK---NDSYVMSAG-GGKVSLFNMMN-FKVMTTFMSPPPASTFLAFHPQDN-NIIAIGMED 896 (1130)
Q Consensus 823 ~~~~~~~~~~~~~i~~l~~s~---dg~~la~~~-dg~i~iwd~~~-~~~~~~~~~~~~~i~~l~~sp~~~-~~lasg~~d 896 (1130)
....+.|+.+|.|+.+|. ..++||+++ |.-|+|||+.. ..++.++.+|...|+++.|...++ ..+++++.|
T Consensus 494 ---~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGAD 570 (1080)
T KOG1408|consen 494 ---TCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGAD 570 (1080)
T ss_pred ---hhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCc
Confidence 112247999999999985 457899998 78899999864 567888999999999999988332 567788889
Q ss_pred CcEEEEEeecCeEEEEEecC-----CCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEE
Q 001184 897 STIQIYNVRVDEVKTKLKGH-----QKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRV 971 (1130)
Q Consensus 897 g~v~iwd~~~~~~~~~l~~h-----~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~ 971 (1130)
+.|.+--.+.......+..| ...+..|+..|..+++++++.|..|+||++++++..+.+.. ...+.+....+
T Consensus 571 ksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKg---s~~~eG~lIKv 647 (1080)
T KOG1408|consen 571 KSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKG---SRDHEGDLIKV 647 (1080)
T ss_pred hhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecc---cccCCCceEEE
Confidence 87765433321111222222 24588999999999999999999999999999887554432 22333677889
Q ss_pred EEcCCCcEEEE-EcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 001184 972 QFHSDQVRLLV-NHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADS 1040 (1130)
Q Consensus 972 ~~s~d~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~ 1040 (1130)
...|.|.|+++ +.|+++.++|..+|+++.+..+| +..|+.+.|++|.++|++.+.||.|.||.+..
T Consensus 648 ~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GH---sE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 648 ILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGH---SEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EECCCccEEEEeecCCceEEEEeccchhhhhhcCc---chheeeeeecccchhheeecCCceEEEEECch
Confidence 99999999999 58999999999999999998887 89999999999999999999999999999875
No 20
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=8.7e-39 Score=304.81 Aligned_cols=292 Identities=23% Similarity=0.294 Sum_probs=255.5
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEE
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 424 (1130)
+|.+.|+.++..+.+..++++++.|.++.+|++.......-. +...++||+..|..++.++||++.
T Consensus 13 gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~--------------~~r~~~GHsH~v~dv~~s~dg~~a 78 (315)
T KOG0279|consen 13 GHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGV--------------PVRRLTGHSHFVSDVVLSSDGNFA 78 (315)
T ss_pred CCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCc--------------eeeeeeccceEecceEEccCCceE
Confidence 499999999999998889999999999999999765332211 122588999999999999999999
Q ss_pred EEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEecCC--CcCEEE
Q 001184 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGH--EAPVYS 502 (1130)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~~h--~~~v~~ 502 (1130)
++++.|+++++||+.+|+..+ .|.||...|.+++|++|.+ .++||+.|++|++||.-|.+..++..+ .+.|.|
T Consensus 79 lS~swD~~lrlWDl~~g~~t~---~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVsc 153 (315)
T KOG0279|consen 79 LSASWDGTLRLWDLATGESTR---RFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSC 153 (315)
T ss_pred EeccccceEEEEEecCCcEEE---EEEecCCceEEEEecCCCc--eeecCCCcceeeeeeecccEEEEEecCCCcCcEEE
Confidence 999999999999999996544 6889999999999999999 799999999999999888888888755 789999
Q ss_pred EeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEE
Q 001184 503 VCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRT 582 (1130)
Q Consensus 503 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1130)
++|+|..+..+|++++.|++|++||+++.+....+.+|.+.++.++++|||...++|+. +|.+.+||+..++.+..
T Consensus 154 vrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgk----dg~~~LwdL~~~k~lys 229 (315)
T KOG0279|consen 154 VRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGK----DGEAMLWDLNEGKNLYS 229 (315)
T ss_pred EEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCC----CceEEEEEccCCceeEe
Confidence 99999988899999999999999999999999999999999999999999999999986 99999999999999888
Q ss_pred EecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCC-------CCCcceEEEcCCCCEEEEEeCCCc
Q 001184 583 YIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGG-------LPSLPRLRFNKEGNLLVVTTADQG 655 (1130)
Q Consensus 583 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-------~~~i~~v~~s~~~~~l~~~~~dg~ 655 (1130)
+.. ...|.+++|+|+. +.+++..+..|+|||++++..+..+..... .....+++|++||..|+.|..|+.
T Consensus 230 l~a--~~~v~sl~fspnr-ywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~ 306 (315)
T KOG0279|consen 230 LEA--FDIVNSLCFSPNR-YWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNV 306 (315)
T ss_pred ccC--CCeEeeEEecCCc-eeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCc
Confidence 774 3389999999975 455555566799999999988877655421 223467899999999999999999
Q ss_pred EEEEEcC
Q 001184 656 IKILANA 662 (1130)
Q Consensus 656 i~iw~~~ 662 (1130)
|++|.+.
T Consensus 307 irv~qv~ 313 (315)
T KOG0279|consen 307 IRVWQVA 313 (315)
T ss_pred EEEEEee
Confidence 9999864
No 21
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=8.8e-38 Score=299.55 Aligned_cols=289 Identities=18% Similarity=0.247 Sum_probs=261.7
Q ss_pred eec-cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCC
Q 001184 342 CTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD 420 (1130)
Q Consensus 342 ~~~-~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 420 (1130)
++| +|...|.++.|++|.++ +++++.||.+.|||.-+....+ .++-....|..+||+|.
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~-ivSaSqDGklIvWDs~TtnK~h-------------------aipl~s~WVMtCA~sPS 108 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRR-IVSASQDGKLIVWDSFTTNKVH-------------------AIPLPSSWVMTCAYSPS 108 (343)
T ss_pred EEecccccceeeeEecCCcCe-EEeeccCCeEEEEEccccccee-------------------EEecCceeEEEEEECCC
Confidence 455 59999999999999995 9999999999999998877665 24455779999999999
Q ss_pred CCEEEEEeCCCeEEEEEecCC--c-cceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCC
Q 001184 421 GNFIGVAFTKHLIHLYTYQGS--N-DLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGH 496 (1130)
Q Consensus 421 g~~las~~~d~~i~vwd~~~~--~-~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h 496 (1130)
|+++|+|+-|....||++.+. + .......+.+|++.+.++.|.+|+. |+|++.|.+..+|| .+|+.+..|.||
T Consensus 109 g~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCalWDie~g~~~~~f~GH 185 (343)
T KOG0286|consen 109 GNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCALWDIETGQQTQVFHGH 185 (343)
T ss_pred CCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEEEEEcccceEEEEecCC
Confidence 999999999999999999864 1 1344456899999999999999876 89999999999999 999999999999
Q ss_pred CcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCC
Q 001184 497 EAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE 576 (1130)
Q Consensus 497 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1130)
.+.|.++++.|+ +++.+++|+.|+..++||++.+.....+.+|...|++++|.|+|.-+++|+. |++.++||++.
T Consensus 186 ~gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSD----D~tcRlyDlRa 260 (343)
T KOG0286|consen 186 TGDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSD----DATCRLYDLRA 260 (343)
T ss_pred cccEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCC----CceeEEEeecC
Confidence 999999999875 6789999999999999999999999999999999999999999999999986 99999999999
Q ss_pred CceeEEEeccc-CceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCc
Q 001184 577 GALKRTYIGFR-KKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQG 655 (1130)
Q Consensus 577 ~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~ 655 (1130)
.+.+..|.... ...+++++|+..|++|++|..|..+.+||.-.++.+..+.+|.. .|.++..+|||..+++|+-|.+
T Consensus 261 D~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeN--RvScl~~s~DG~av~TgSWDs~ 338 (343)
T KOG0286|consen 261 DQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHEN--RVSCLGVSPDGMAVATGSWDST 338 (343)
T ss_pred CcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCC--eeEEEEECCCCcEEEecchhHh
Confidence 99888887432 23688999999999999999999999999999999999987766 8999999999999999999999
Q ss_pred EEEEE
Q 001184 656 IKILA 660 (1130)
Q Consensus 656 i~iw~ 660 (1130)
++||.
T Consensus 339 lriW~ 343 (343)
T KOG0286|consen 339 LRIWA 343 (343)
T ss_pred eeecC
Confidence 99994
No 22
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.5e-37 Score=320.94 Aligned_cols=474 Identities=16% Similarity=0.251 Sum_probs=354.8
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEE
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 424 (1130)
.|.++|.+|.|+|...+ +.++-.+|.|.|||.++...++. +.-..-+|.+..|-+--+++
T Consensus 11 ~rSdRVKsVd~HPtePw-~la~LynG~V~IWnyetqtmVks-------------------feV~~~PvRa~kfiaRknWi 70 (794)
T KOG0276|consen 11 SRSDRVKSVDFHPTEPW-ILAALYNGDVQIWNYETQTMVKS-------------------FEVSEVPVRAAKFIARKNWI 70 (794)
T ss_pred ccCCceeeeecCCCCce-EEEeeecCeeEEEecccceeeee-------------------eeecccchhhheeeeccceE
Confidence 38899999999999986 66677899999999999888763 33345689999999999999
Q ss_pred EEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe--cCCCeeeEecCCCcCEEE
Q 001184 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQFEGHEAPVYS 502 (1130)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd--~~~~~~~~~~~h~~~v~~ 502 (1130)
++|++|..|+||+..+++.+. .+..|.+.|.+++.+|... +++|+|+|-+|++|| ..-.+.++|.||+..|.+
T Consensus 71 v~GsDD~~IrVfnynt~ekV~---~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMq 145 (794)
T KOG0276|consen 71 VTGSDDMQIRVFNYNTGEKVK---TFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQ 145 (794)
T ss_pred EEecCCceEEEEecccceeeE---EeeccccceeeeeecCCCC--eEEecCCccEEEEeeccCceeeeeEEcCcceEEEE
Confidence 999999999999999987554 7899999999999999998 899999999999999 444678899999999999
Q ss_pred EeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCC--CeEEEeeecCCCCcEEEEeeCCCCcee
Q 001184 503 VCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADG--SRLFSCGTSKEGDSHLVEWNESEGALK 580 (1130)
Q Consensus 503 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1130)
++|+|.+. +.+++++.|++|++|.+....+..++.+|...|+++.|-+-| .+|++++. |..+++||.++..++
T Consensus 146 v~fnPkD~-ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD----D~tiKvWDyQtk~CV 220 (794)
T KOG0276|consen 146 VAFNPKDP-NTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD----DLTIKVWDYQTKSCV 220 (794)
T ss_pred EEecCCCc-cceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCC----CceEEEeecchHHHH
Confidence 99998654 789999999999999999999999999999999999998755 68999885 899999999999999
Q ss_pred EEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEE
Q 001184 581 RTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILA 660 (1130)
Q Consensus 581 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~ 660 (1130)
+++.||.. .|..++|+|.-..+++|++||+++||+..+.+...++..... .+.+++..+.++.+++|.+.|.+.+ .
T Consensus 221 ~TLeGHt~-Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gle--RvW~I~~~k~~~~i~vG~Deg~i~v-~ 296 (794)
T KOG0276|consen 221 QTLEGHTN-NVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLE--RVWCIAAHKGDGKIAVGFDEGSVTV-K 296 (794)
T ss_pred HHhhcccc-cceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCc--eEEEEeecCCCCeEEEeccCCcEEE-E
Confidence 99999887 899999999999999999999999999999888888776544 8999999998888999998888755 3
Q ss_pred cCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCC
Q 001184 661 NADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDK 740 (1130)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 740 (1130)
+..+.. .++-+..|
T Consensus 297 lgreeP-----------------------------------------------------------------~vsMd~~g- 310 (794)
T KOG0276|consen 297 LGREEP-----------------------------------------------------------------AVSMDSNG- 310 (794)
T ss_pred ccCCCC-----------------------------------------------------------------ceeecCCc-
Confidence 322200 00001111
Q ss_pred ccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCC
Q 001184 741 TKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSN 820 (1130)
Q Consensus 741 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~ 820 (1130)
--+|.... .|..+-. -+.+..+ ++..
T Consensus 311 KIiwa~~~--------------------ei~~~~~-------ks~~~~~---------------------------ev~D 336 (794)
T KOG0276|consen 311 KIIWAVHS--------------------EIQAVNL-------KSVGAQK---------------------------EVTD 336 (794)
T ss_pred cEEEEcCc--------------------eeeeeec-------eeccCcc---------------------------cccC
Confidence 11222111 1111100 0000000 1122
Q ss_pred CcceeccCCC--CCCCceeEEEEecCCCEEEEEeCCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCc
Q 001184 821 GLLMTNDVPE--NAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDST 898 (1130)
Q Consensus 821 ~~~~~~~~~~--~~~~~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~ 898 (1130)
|+.+...+.+ .-+-....++-||+|+++++++||.-.||..-..+. ...+.-....|++ +....|+-..++.
T Consensus 337 gErL~LsvKeLgs~eiyPq~L~hsPNGrfV~VcgdGEyiIyTala~Rn-----K~fG~~~eFvw~~-dsne~avRes~~~ 410 (794)
T KOG0276|consen 337 GERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCGDGEYIIYTALALRN-----KAFGSGLEFVWAA-DSNEFAVRESNGN 410 (794)
T ss_pred CccccchhhhccccccchHHhccCCCCcEEEEecCccEEEEEeeehhh-----cccccceeEEEcC-CCCeEEEEecCCc
Confidence 2222211111 111223457889999999999999999987433221 1345567788999 7777888888899
Q ss_pred EEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCc
Q 001184 899 IQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQV 978 (1130)
Q Consensus 899 v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~ 978 (1130)
|+++ +..+....+...-. +..+ -.|.+|.. ..++.+++||.++++..+... .....+.|+.+|.
T Consensus 411 vki~--knfke~ksi~~~~~---~e~i-~gg~Llg~-~ss~~~~fydW~~~~lVrrI~---------v~~k~v~w~d~g~ 474 (794)
T KOG0276|consen 411 VKIF--KNFKEHKSIRPDMS---AEGI-FGGPLLGV-RSSDFLCFYDWESGELVRRIE---------VTSKHVYWSDNGE 474 (794)
T ss_pred eEEE--ecceeccccccccc---eeee-cCCceEEE-EeCCeEEEEEcccceEEEEEe---------eccceeEEecCCC
Confidence 9998 55665555442111 1111 12444444 445679999999977654433 3345789999999
Q ss_pred EEEEEcCCcEEEEECC
Q 001184 979 RLLVNHETQLAIYDGS 994 (1130)
Q Consensus 979 ~l~~~~d~~i~v~d~~ 994 (1130)
+++.+.|...+++...
T Consensus 475 lVai~~d~Sfyil~~n 490 (794)
T KOG0276|consen 475 LVAIAGDDSFYILKFN 490 (794)
T ss_pred EEEEEecCceeEEEec
Confidence 9999888776666543
No 23
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=9.1e-38 Score=340.49 Aligned_cols=277 Identities=21% Similarity=0.316 Sum_probs=239.4
Q ss_pred cccCCcccceeeecc-CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecc---cceee---------eccccc
Q 001184 331 WSLDDLPRAVACTMH-QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSK---PFKIW---------DMSNCS 397 (1130)
Q Consensus 331 ~~~~~~~~~~~~~~~-h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~---~~~~~---------~~~~~~ 397 (1130)
.+.+..|..+++++. -...|+|+.||+|++ +||.|-.|..|++|.+...++...+ .+.-- ++-+..
T Consensus 361 l~~~~lpSic~YT~~nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~ 439 (707)
T KOG0263|consen 361 LGRNSLPSICMYTFHNTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDD 439 (707)
T ss_pred cCCCCCCcEEEEEEEEcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhcccc
Confidence 345667777888886 567999999999998 7999999999999999854322110 00000 111111
Q ss_pred cceeeeeecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCC
Q 001184 398 MMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDD 477 (1130)
Q Consensus 398 ~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d 477 (1130)
.......+.||.++|..+.|+||.++|++++.|++||+|.+.+..++. .+.||..+|+++.|+|-|- ++||+|.|
T Consensus 440 ~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---~y~GH~~PVwdV~F~P~Gy--YFatas~D 514 (707)
T KOG0263|consen 440 SSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---IYKGHLAPVWDVQFAPRGY--YFATASHD 514 (707)
T ss_pred CCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE---EecCCCcceeeEEecCCce--EEEecCCC
Confidence 222333588999999999999999999999999999999999977654 6789999999999999998 89999999
Q ss_pred CcEEEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeE
Q 001184 478 KLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRL 556 (1130)
Q Consensus 478 ~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 556 (1130)
++.++|. ....+++.+.+|-+.|.|+.|||+. .++++||.|.+||+||+.++..+..+.+|..+|.+++|+|+|++|
T Consensus 515 ~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs--~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~L 592 (707)
T KOG0263|consen 515 QTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNS--NYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYL 592 (707)
T ss_pred ceeeeeecccCCchhhhcccccccceEEECCcc--cccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceE
Confidence 9999999 8888999999999999999998755 799999999999999999999999999999999999999999999
Q ss_pred EEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 001184 557 FSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNV 620 (1130)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 620 (1130)
++++. ++.|.+||+.++.++..+.+|. +.+.++.|+.+|..|++|+.|.+|++||+..-
T Consensus 593 aSg~e----d~~I~iWDl~~~~~v~~l~~Ht-~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 593 ASGDE----DGLIKIWDLANGSLVKQLKGHT-GTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred eeccc----CCcEEEEEcCCCcchhhhhccc-CceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 99986 9999999999999999999994 48999999999999999999999999998653
No 24
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=7.3e-39 Score=322.35 Aligned_cols=284 Identities=20% Similarity=0.306 Sum_probs=257.0
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-c
Q 001184 407 DSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-L 485 (1130)
Q Consensus 407 ~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~ 485 (1130)
+.+.+|..+.||+|++.||+|+.+|.++||+..+...+. ++.||...|.++.|+|......++||+.||++++|+ .
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~---~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQ---TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeE---EEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 556789999999999999999999999999999875443 789999999999999984222799999999999999 5
Q ss_pred CCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCC
Q 001184 486 SGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEG 565 (1130)
Q Consensus 486 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 565 (1130)
+..++..+.+|..+|..++|+|+ |++|+|++.|.+-++||+++........+|...|.+++|.+||..+++||.
T Consensus 250 ~e~~l~~l~gH~~RVs~VafHPs--G~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGl---- 323 (459)
T KOG0272|consen 250 QETPLQDLEGHLARVSRVAFHPS--GKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGL---- 323 (459)
T ss_pred CCcchhhhhcchhhheeeeecCC--CceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCc----
Confidence 55889999999999999999865 489999999999999999999999999999999999999999999999997
Q ss_pred CcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcC-CC
Q 001184 566 DSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK-EG 644 (1130)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~-~~ 644 (1130)
|..-++||+++|+++..+.+|.. .|..+.|+|+|-.+++|+.|++++|||++..+.+.++..|.. -|+.|.|+| .|
T Consensus 324 D~~~RvWDlRtgr~im~L~gH~k-~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n--lVS~Vk~~p~~g 400 (459)
T KOG0272|consen 324 DSLGRVWDLRTGRCIMFLAGHIK-EILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN--LVSQVKYSPQEG 400 (459)
T ss_pred cchhheeecccCcEEEEeccccc-ceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccc--hhhheEecccCC
Confidence 78889999999999999999776 899999999999999999999999999999999888887765 799999998 78
Q ss_pred CEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCcc
Q 001184 645 NLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSA 724 (1130)
Q Consensus 645 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1130)
.+|++++.|++++||...+. .+.+.+
T Consensus 401 ~fL~TasyD~t~kiWs~~~~-~~~ksL----------------------------------------------------- 426 (459)
T KOG0272|consen 401 YFLVTASYDNTVKIWSTRTW-SPLKSL----------------------------------------------------- 426 (459)
T ss_pred eEEEEcccCcceeeecCCCc-ccchhh-----------------------------------------------------
Confidence 99999999999999987665 333322
Q ss_pred ccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeee
Q 001184 725 ARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWK 795 (1130)
Q Consensus 725 ~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~ 795 (1130)
.+|.+.|.++.+++|+..+++++.|.++++|.
T Consensus 427 ---------------------------------------aGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 427 ---------------------------------------AGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ---------------------------------------cCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 34889999999999999999999999999994
No 25
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=2.5e-35 Score=320.88 Aligned_cols=562 Identities=13% Similarity=0.190 Sum_probs=408.3
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 425 (1130)
+.+.|+|++=+.+- +++++ ...|.+|-. |+.+. +++.+|.+.|.-+. |=|.++.
T Consensus 75 lp~~I~alas~~~~---vy~A~-g~~i~~~~r--gk~i~------------------~~~~~~~a~v~~l~--~fGe~li 128 (910)
T KOG1539|consen 75 LPDKITALASDKDY---VYVAS-GNKIYAYAR--GKHIR------------------HTTLLHGAKVHLLL--PFGEHLI 128 (910)
T ss_pred CCCceEEEEecCce---EEEec-CcEEEEEEc--cceEE------------------EEeccccceEEEEe--eecceEE
Confidence 77899999876653 33333 236666653 44332 24667777776654 4578999
Q ss_pred EEeCCCeEEEEEecCC-cccee-eeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEE
Q 001184 426 VAFTKHLIHLYTYQGS-NDLCQ-SLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYS 502 (1130)
Q Consensus 426 s~~~d~~i~vwd~~~~-~~~~~-~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~ 502 (1130)
++..++.+.||+..++ ..... ..-++.-.+.|+++. +|..---.++.|+.+|.+.+|+ .+++.++++.++...|++
T Consensus 129 a~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ 207 (910)
T KOG1539|consen 129 AVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITA 207 (910)
T ss_pred EEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeE
Confidence 9999999999999884 22111 111222223377664 3432111689999999999999 999999999999999999
Q ss_pred EeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEE
Q 001184 503 VCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRT 582 (1130)
Q Consensus 503 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1130)
+.-+|.- ..++.|..+|+|.+++++..+.+..+....+.|++++|..||+.+.+.+. ..|.+.+||++..+.+..
T Consensus 208 ieqsPaL--DVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~---~~G~m~~wDLe~kkl~~v 282 (910)
T KOG1539|consen 208 IEQSPAL--DVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGR---SNGDMAFWDLEKKKLINV 282 (910)
T ss_pred eccCCcc--eEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEecc---CCceEEEEEcCCCeeeee
Confidence 9765544 68999999999999999999999999887789999999999998877664 268999999999998888
Q ss_pred EecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc----eeEEEeccCCCCCcceEEEc-CCCCEEEEEeCCCcEE
Q 001184 583 YIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVN----MLTSTEAEGGLPSLPRLRFN-KEGNLLVVTTADQGIK 657 (1130)
Q Consensus 583 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~~~i~~v~~s-~~~~~l~~~~~dg~i~ 657 (1130)
....+.+.+....|.|....+++++.|+.+++|=.+++. .++.-. +|..+..++.|. .+|..+.+++.|++++
T Consensus 283 ~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~--GHs~Pp~~irfy~~~g~~ilsa~~Drt~r 360 (910)
T KOG1539|consen 283 TRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRG--GHSAPPSCIRFYGSQGHFILSAKQDRTLR 360 (910)
T ss_pred eeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeecc--CCCCCchheeeeccCcEEEEecccCcchh
Confidence 876666678889999999999999999999888555432 233333 455578899987 6899999999999999
Q ss_pred EEEcCCCchhhhhhcccccccccccccccccccceeecccccccccccc-CCCCCCCCcccccCCCccccCCCCcccccc
Q 001184 658 ILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERV-DRSSPARPSTILNGADSAARGIEKPRNLED 736 (1130)
Q Consensus 658 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (1130)
.+++.........-+.|... ..++.... .-....++...++..........+.+...-
T Consensus 361 ~fs~~~e~~~~~l~~~~~~~---------------------~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~ 419 (910)
T KOG1539|consen 361 SFSVISESQSQELGQLHNKK---------------------RAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHK 419 (910)
T ss_pred hhhhhHHHHhHhhccccccc---------------------ccccccccchhhhcCCcceeeecccchhhhhcceeEEec
Confidence 88875431111111111000 00000000 001111222233333333333444445555
Q ss_pred cCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccc
Q 001184 737 ISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHW 816 (1130)
Q Consensus 737 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w 816 (1130)
.+...+.|+.......... +.-.........+.+++.++.|+..+.|.+.|.|.+|++..+-..
T Consensus 420 ~~~~~~tW~~~n~~~G~~~--L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r-------------- 483 (910)
T KOG1539|consen 420 GKRSAYTWNFRNKTSGRHV--LDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHR-------------- 483 (910)
T ss_pred CcceEEEEeccCcccccEE--ecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeee--------------
Confidence 5567788887764321111 000001124577899999999999999999999999876553211
Q ss_pred cCCCCcceeccC-CCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEe
Q 001184 817 QPSNGLLMTNDV-PENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGM 894 (1130)
Q Consensus 817 ~~~~~~~~~~~~-~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~ 894 (1130)
.... ...|..+|+.++...-++.+++++ +|.+.+||......+..+.. ...++++..+. ...++|.+.
T Consensus 484 --------~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l-~~~~~~iv~hr-~s~l~a~~~ 553 (910)
T KOG1539|consen 484 --------KSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRL-GSSITGIVYHR-VSDLLAIAL 553 (910)
T ss_pred --------cccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeecc-CCCcceeeeee-hhhhhhhhc
Confidence 1100 125899999999999999898887 99999999999988887763 45688888888 778999999
Q ss_pred CCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEc
Q 001184 895 EDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFH 974 (1130)
Q Consensus 895 ~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 974 (1130)
.|-.|+++|+.+.+.++.|.||.+.|++++|||||+||++++.|++|++||+.++......... .+.+.+.||
T Consensus 554 ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd-------~~~~sls~S 626 (910)
T KOG1539|consen 554 DDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD-------SPCTSLSFS 626 (910)
T ss_pred CceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC-------CcceeeEEC
Confidence 9999999999999999999999999999999999999999999999999999998765444332 678999999
Q ss_pred CCCcEEEEEc--CCcEEEEECCC
Q 001184 975 SDQVRLLVNH--ETQLAIYDGSK 995 (1130)
Q Consensus 975 ~d~~~l~~~~--d~~i~v~d~~~ 995 (1130)
|+|.+||+.+ ...|++|.-..
T Consensus 627 PngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 627 PNGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred CCCCEEEEEEecCceEEEEEchh
Confidence 9999999954 46799997653
No 26
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-34 Score=316.05 Aligned_cols=558 Identities=17% Similarity=0.252 Sum_probs=390.9
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 425 (1130)
...+|..++|+|...+ +.++-..|.|++||+.-+.++.. +.+|.++|..++|+|.+.+++
T Consensus 8 kSsRvKglsFHP~rPw-ILtslHsG~IQlWDYRM~tli~r-------------------FdeHdGpVRgv~FH~~qplFV 67 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPW-ILTSLHSGVIQLWDYRMGTLIDR-------------------FDEHDGPVRGVDFHPTQPLFV 67 (1202)
T ss_pred ccccccceecCCCCCE-EEEeecCceeeeehhhhhhHHhh-------------------hhccCCccceeeecCCCCeEE
Confidence 5678999999999985 77888999999999998888763 779999999999999999999
Q ss_pred EEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEe
Q 001184 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVC 504 (1130)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~ 504 (1130)
+|++|..|+||+.++.+|+. ++.||-+.|..+.|++.-. +++|+|+|.+|+||+ .+++++..+.||...|.|..
T Consensus 68 SGGDDykIkVWnYk~rrclf---tL~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAq 142 (1202)
T KOG0292|consen 68 SGGDDYKIKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQ 142 (1202)
T ss_pred ecCCccEEEEEecccceehh---hhccccceeEEeeccCCCc--eEEEccCCCeEEEEeccCCceEEEEecCceEEEeec
Confidence 99999999999999987665 7899999999999999988 899999999999999 99999999999999999999
Q ss_pred ecccCCccEEEEEecCCcEEEEEccCCc---------------------------c--eeeecCCCccEEEEEEecCCCe
Q 001184 505 PHQKENIHFIFSTAVDGKIKAWLYDNVG---------------------------S--RVDYDAPGLWCTTMLYSADGSR 555 (1130)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~---------------------------~--~~~~~~~~~~v~~~~~s~~~~~ 555 (1130)
|+|.. ..++|+|.|.+||+||+...+ . ...+.+|...|+-++|.|.-..
T Consensus 143 FhptE--DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpl 220 (1202)
T KOG0292|consen 143 FHPTE--DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPL 220 (1202)
T ss_pred cCCcc--ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcce
Confidence 99877 589999999999999975311 0 1245778889999999999999
Q ss_pred EEEeeecCCCCcEEEEeeCCCCce--eEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCC
Q 001184 556 LFSCGTSKEGDSHLVEWNESEGAL--KRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLP 633 (1130)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 633 (1130)
+++|+. |..|++|....-+. +.+..||.+ .|.++-|+|..+.+++.|+|++|+|||+...+.+.++.....
T Consensus 221 iVSG~D----DRqVKlWrmnetKaWEvDtcrgH~n-nVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrend-- 293 (1202)
T KOG0292|consen 221 IVSGAD----DRQVKLWRMNETKAWEVDTCRGHYN-NVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRREND-- 293 (1202)
T ss_pred EEecCC----cceeeEEEeccccceeehhhhcccC-CcceEEecCccceeEecCCCccEEEEecccccceeeeeccCC--
Confidence 999985 89999999865543 456678776 899999999999999999999999999999999999876544
Q ss_pred CcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCC
Q 001184 634 SLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPAR 713 (1130)
Q Consensus 634 ~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~ 713 (1130)
....++.+|..++++.| .|+-+.+|.++.. +....+ +-
T Consensus 294 RFW~laahP~lNLfAAg-HDsGm~VFkleRE-rpa~~v-------------------------~~--------------- 331 (1202)
T KOG0292|consen 294 RFWILAAHPELNLFAAG-HDSGMIVFKLERE-RPAYAV-------------------------NG--------------- 331 (1202)
T ss_pred eEEEEEecCCcceeeee-cCCceEEEEEccc-CceEEE-------------------------cC---------------
Confidence 78999999999877766 5555667776543 111100 00
Q ss_pred CcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeee--CCeE
Q 001184 714 PSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWS--NGVQ 791 (1130)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~--dg~i 791 (1130)
+..+.+- |..++.+++.+.... ....+...........++.|+|....++.+++ +|..
T Consensus 332 ---------------n~LfYvk--d~~i~~~d~~t~~d~---~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y 391 (1202)
T KOG0292|consen 332 ---------------NGLFYVK--DRFIRSYDLRTQKDT---AVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEY 391 (1202)
T ss_pred ---------------CEEEEEc--cceEEeeeccccccc---eeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeE
Confidence 0111111 456666666552221 11122221224467788999998887776653 5666
Q ss_pred EeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEeCCeEEEEECCCceeEEEEe
Q 001184 792 KLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFM 871 (1130)
Q Consensus 792 ~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~ 871 (1130)
.++.+......... + .... .......+-...++-.+..-++..+.+-++.+. ..+.+.
T Consensus 392 ~L~~ipk~~~~~~~---------------~----~~~~--k~tG~~a~fvarNrfavl~k~~~~v~ik~l~N~-vtkkl~ 449 (1202)
T KOG0292|consen 392 ELVQIPKDSDGVSD---------------G----KDVK--KGTGEGALFVARNRFAVLDKSNEQVVIKNLKNK-VTKKLL 449 (1202)
T ss_pred EEEEecCcccccCC---------------c----hhhh--cCCCCceEEEEecceEEEEecCcceEEecccch-hhhccc
Confidence 66655432110000 0 0000 111222222222222222222444555555432 222222
Q ss_pred CCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcc
Q 001184 872 SPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEK 951 (1130)
Q Consensus 872 ~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~ 951 (1130)
.. ..+..+-+.- .|.+|+. ....|.+||++..+.+..++ ...|.-+.||+|..+++--+.. +|.|.+.+-.
T Consensus 450 ~~-~~~~~IF~ag-~g~lll~--~~~~v~lfdvQq~~~~~si~--~s~vkyvvws~dm~~vAll~Kh-~i~i~~kkL~-- 520 (1202)
T KOG0292|consen 450 LP-ESTDDIFYAG-TGNLLLR--SPDSVTLFDVQQKKKVGSIK--VSKVKYVVWSNDMSRVALLSKH-TITIADKKLE-- 520 (1202)
T ss_pred Cc-ccccceeecc-CccEEEE--cCCeEEEEEeecceEEEEEe--cCceeEEEEcCccchhhhcccc-eEEEEecchh--
Confidence 11 2233444444 5665543 34569999999988887776 4678899999999888877654 6888876541
Q ss_pred cceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCC
Q 001184 952 RKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDG 1031 (1130)
Q Consensus 952 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg 1031 (1130)
. ....+....|.+-+|..+|-++.+..+.--+-..-.+...++++ ..+++-... .|+.+++-..|+
T Consensus 521 ---l---~~sihEtiriksgawde~gVfiYtT~nHikYal~~GD~GIikTL------d~~iyitkv--~gn~V~cl~rd~ 586 (1202)
T KOG0292|consen 521 ---L---LCSIHETIRIKSGAWDEDGVFIYTTLNHIKYALENGDSGIIKTL------DKPIYITKV--KGNKVFCLNRDG 586 (1202)
T ss_pred ---h---eecchheeEeeeceeccCceEEEEehhhhhhhhccCCcceEEec------ccceEEEEe--eCCEEEEEecCC
Confidence 1 12223346788889999998888754432222221223334444 234544444 477888888899
Q ss_pred cEEEEeCCCcccc
Q 001184 1032 SIGVFDADSLRLR 1044 (1130)
Q Consensus 1032 ~i~vwd~~~~~~~ 1044 (1130)
.+.+.+++..+..
T Consensus 587 ~~~~~~IDptEy~ 599 (1202)
T KOG0292|consen 587 EIECLTIDPTEYR 599 (1202)
T ss_pred CeEEEeechHHHH
Confidence 9999988865443
No 27
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.4e-36 Score=288.65 Aligned_cols=285 Identities=17% Similarity=0.234 Sum_probs=256.8
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iw 483 (1130)
+++||.+.|.++.|++|+++|++++.||.+.|||.-+..... .+.-....|..++|+|.|+ +++.|+-|+...||
T Consensus 50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h---aipl~s~WVMtCA~sPSg~--~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH---AIPLPSSWVMTCAYSPSGN--FVACGGLDNKCSIY 124 (343)
T ss_pred EecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee---EEecCceeEEEEEECCCCC--eEEecCcCceeEEE
Confidence 688999999999999999999999999999999998866443 4556678999999999999 89999999999999
Q ss_pred ecC-C------CeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEec-CCCe
Q 001184 484 DLS-G------RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSA-DGSR 555 (1130)
Q Consensus 484 d~~-~------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~ 555 (1130)
+.+ . +..+.+.+|++.+.++.|.. ...|++++.|.+..+||+++++....+.+|...|.++.++| +++.
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~d---D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLD---DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcC---CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCe
Confidence 933 2 34567899999999999854 35799999999999999999999999999999999999999 9999
Q ss_pred EEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCc
Q 001184 556 LFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSL 635 (1130)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i 635 (1130)
+++++. |+..++||++.+..+++|.+|.. .|++++|.|+|.-+++|++|++.++||++..+.+..+.......+|
T Consensus 202 FvSg~c----D~~aklWD~R~~~c~qtF~ghes-DINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gi 276 (343)
T KOG0286|consen 202 FVSGGC----DKSAKLWDVRSGQCVQTFEGHES-DINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGI 276 (343)
T ss_pred EEeccc----ccceeeeeccCcceeEeeccccc-ccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCc
Confidence 999997 89999999999999999999876 8999999999999999999999999999999999999888878899
Q ss_pred ceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCc
Q 001184 636 PRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPS 715 (1130)
Q Consensus 636 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~ 715 (1130)
++++||..|++|+.|..|.++.+||.-.+.+ ...
T Consensus 277 tSv~FS~SGRlLfagy~d~~c~vWDtlk~e~-vg~--------------------------------------------- 310 (343)
T KOG0286|consen 277 TSVAFSKSGRLLFAGYDDFTCNVWDTLKGER-VGV--------------------------------------------- 310 (343)
T ss_pred eeEEEcccccEEEeeecCCceeEeeccccce-EEE---------------------------------------------
Confidence 9999999999999999999999999654411 000
Q ss_pred ccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEee
Q 001184 716 TILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLW 794 (1130)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw 794 (1130)
+ .+|.++|.++..+|||..+++++.|.+++||
T Consensus 311 --------------------------------------------L---~GHeNRvScl~~s~DG~av~TgSWDs~lriW 342 (343)
T KOG0286|consen 311 --------------------------------------------L---AGHENRVSCLGVSPDGMAVATGSWDSTLRIW 342 (343)
T ss_pred --------------------------------------------e---eccCCeeEEEEECCCCcEEEecchhHheeec
Confidence 0 2499999999999999999999999999999
No 28
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.8e-35 Score=305.49 Aligned_cols=465 Identities=17% Similarity=0.232 Sum_probs=351.6
Q ss_pred ecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe
Q 001184 405 VKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD 484 (1130)
Q Consensus 405 ~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd 484 (1130)
+..++..|.++.|+|...+++++-.+|.|.|||.++...++ .+.-..-+|.+..|-+.-+ ++++|++|..|+||+
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVk---sfeV~~~PvRa~kfiaRkn--Wiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVK---SFEVSEVPVRAAKFIARKN--WIVTGSDDMQIRVFN 83 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeee---eeeecccchhhheeeeccc--eEEEecCCceEEEEe
Confidence 44588999999999999999999999999999999977665 5667788999999998888 899999999999999
Q ss_pred -cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCc-ceeeecCCCccEEEEEEec-CCCeEEEeee
Q 001184 485 -LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVG-SRVDYDAPGLWCTTMLYSA-DGSRLFSCGT 561 (1130)
Q Consensus 485 -~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~ 561 (1130)
.+++.++.|..|...|.+++.||.. .+++|+|+|-+|++||.+..- +..++.+|.+.|++++|+| |.+.+++++-
T Consensus 84 ynt~ekV~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL 161 (794)
T KOG0276|consen 84 YNTGEKVKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL 161 (794)
T ss_pred cccceeeEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence 9999999999999999999999866 799999999999999998754 5668999999999999999 6778999987
Q ss_pred cCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCC--CEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEE
Q 001184 562 SKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTR--NRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLR 639 (1130)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~ 639 (1130)
|++|++|.+.+..+..++.+|.. .|+|+.+-+.| .++++|++|..++|||..+..+++++.+|.+ .|..+.
T Consensus 162 ----DrTVKVWslgs~~~nfTl~gHek-GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~--Nvs~v~ 234 (794)
T KOG0276|consen 162 ----DRTVKVWSLGSPHPNFTLEGHEK-GVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN--NVSFVF 234 (794)
T ss_pred ----cccEEEEEcCCCCCceeeecccc-CcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc--cceEEE
Confidence 99999999999999999999877 89999998755 5999999999999999999999999998876 799999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCccccc
Q 001184 640 FNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILN 719 (1130)
Q Consensus 640 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~ 719 (1130)
|+|.-.++++|+.||+++||+..+- +....+.
T Consensus 235 fhp~lpiiisgsEDGTvriWhs~Ty-~lE~tLn----------------------------------------------- 266 (794)
T KOG0276|consen 235 FHPELPIIISGSEDGTVRIWNSKTY-KLEKTLN----------------------------------------------- 266 (794)
T ss_pred ecCCCcEEEEecCCccEEEecCcce-ehhhhhh-----------------------------------------------
Confidence 9999999999999999999986543 1111110
Q ss_pred CCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCC
Q 001184 720 GADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRT 799 (1130)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~ 799 (1130)
..-.++.+++..+.+..+++|.++|.+.+= +
T Consensus 267 ---------------------------------------------~gleRvW~I~~~k~~~~i~vG~Deg~i~v~-l--- 297 (794)
T KOG0276|consen 267 ---------------------------------------------YGLERVWCIAAHKGDGKIAVGFDEGSVTVK-L--- 297 (794)
T ss_pred ---------------------------------------------cCCceEEEEeecCCCCeEEEeccCCcEEEE-c---
Confidence 023456666666777778888887777541 1
Q ss_pred CCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEeC--CeEEEE------ECCCceeEE---
Q 001184 800 EQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGG--GKVSLF------NMMNFKVMT--- 868 (1130)
Q Consensus 800 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~d--g~i~iw------d~~~~~~~~--- 868 (1130)
......+.+++.|+.+-+... -.+.+- ++..|+.+.
T Consensus 298 ---------------------------------greeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~Lsv 344 (794)
T KOG0276|consen 298 ---------------------------------GREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSV 344 (794)
T ss_pred ---------------------------------cCCCCceeecCCccEEEEcCceeeeeeceeccCcccccCCccccchh
Confidence 112223444555554433221 111111 223333221
Q ss_pred -EEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECC
Q 001184 869 -TFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTD 947 (1130)
Q Consensus 869 -~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~ 947 (1130)
.+..-.-....++-+| +|++++++ .||.-.||..-..+ ..+.+.-....|++|.+..++-..++.|+++ +
T Consensus 345 KeLgs~eiyPq~L~hsP-NGrfV~Vc-gdGEyiIyTala~R-----nK~fG~~~eFvw~~dsne~avRes~~~vki~--k 415 (794)
T KOG0276|consen 345 KELGSVEIYPQTLAHSP-NGRFVVVC-GDGEYIIYTALALR-----NKAFGSGLEFVWAADSNEFAVRESNGNVKIF--K 415 (794)
T ss_pred hhccccccchHHhccCC-CCcEEEEe-cCccEEEEEeeehh-----hcccccceeEEEcCCCCeEEEEecCCceEEE--e
Confidence 1111111234578899 88877765 58888888743221 1234556678899998888888888889988 4
Q ss_pred CCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEE
Q 001184 948 TWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYAT 1027 (1130)
Q Consensus 948 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~ 1027 (1130)
+.+..+..... .....--.|.+|.+..++.+++||.+++..++.+... ...+.|+-+|.+++.+
T Consensus 416 nfke~ksi~~~----------~~~e~i~gg~Llg~~ss~~~~fydW~~~~lVrrI~v~------~k~v~w~d~g~lVai~ 479 (794)
T KOG0276|consen 416 NFKEHKSIRPD----------MSAEGIFGGPLLGVRSSDFLCFYDWESGELVRRIEVT------SKHVYWSDNGELVAIA 479 (794)
T ss_pred cceeccccccc----------cceeeecCCceEEEEeCCeEEEEEcccceEEEEEeec------cceeEEecCCCEEEEE
Confidence 44432222111 1122223456677788999999999999999988654 4578999999999988
Q ss_pred eCCCcEEEEeCC
Q 001184 1028 FTDGSIGVFDAD 1039 (1130)
Q Consensus 1028 ~~Dg~i~vwd~~ 1039 (1130)
+.| ..+|+.+.
T Consensus 480 ~d~-Sfyil~~n 490 (794)
T KOG0276|consen 480 GDD-SFYILKFN 490 (794)
T ss_pred ecC-ceeEEEec
Confidence 854 44555443
No 29
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.3e-35 Score=277.87 Aligned_cols=284 Identities=17% Similarity=0.273 Sum_probs=238.7
Q ss_pred eEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecC
Q 001184 361 TLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQG 440 (1130)
Q Consensus 361 ~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~ 440 (1130)
-+||+++.|.+||+|...+|.+.+ ++....+.|..+...||++.||+++.. .|++||+.+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~r-------------------Tiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S 70 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSR-------------------TIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNS 70 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEE-------------------EEecCccceeeEEEcCCcchhhhccCC-eeEEEEccC
Confidence 489999999999999999999987 355667889999999999999999764 699999999
Q ss_pred CccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEecCCCcCEEEEeecccCCccEEEEEecC
Q 001184 441 SNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVD 520 (1130)
Q Consensus 441 ~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d 520 (1130)
++.- +..++.+|+..|+++.|..||+ +++|||+||+++|||...........|..+|+++..+|.. ..|++|..+
T Consensus 71 ~np~-Pv~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQ--teLis~dqs 145 (311)
T KOG0315|consen 71 NNPN-PVATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQ--TELISGDQS 145 (311)
T ss_pred CCCC-ceeEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCc--ceEEeecCC
Confidence 8754 5668999999999999999999 8999999999999994434444444588999999998755 679999999
Q ss_pred CcEEEEEccCCcceeeec-CCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCc------eeEEEecccCceeEE
Q 001184 521 GKIKAWLYDNVGSRVDYD-APGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA------LKRTYIGFRKKSAGV 593 (1130)
Q Consensus 521 g~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~------~~~~~~~~~~~~v~~ 593 (1130)
|.|++||+.+..+...+. .....|.++...|||.+++.+.. .|..++|++-+.+ ++..++.|.. -+..
T Consensus 146 g~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nn----kG~cyvW~l~~~~~~s~l~P~~k~~ah~~-~il~ 220 (311)
T KOG0315|consen 146 GNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANN----KGNCYVWRLLNHQTASELEPVHKFQAHNG-HILR 220 (311)
T ss_pred CcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecC----CccEEEEEccCCCccccceEhhheecccc-eEEE
Confidence 999999999876665443 34458999999999999999865 8999999986643 4556777665 6777
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcc
Q 001184 594 VQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIET 673 (1130)
Q Consensus 594 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 673 (1130)
+.+||++++|++++.|.+++||+.++. ....+...++...+..++||.||++|++++.|+.+++|++..+ +..+...+
T Consensus 221 C~lSPd~k~lat~ssdktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~-k~v~qy~g 298 (311)
T KOG0315|consen 221 CLLSPDVKYLATCSSDKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAG-KEVRQYQG 298 (311)
T ss_pred EEECCCCcEEEeecCCceEEEEecCCc-eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccC-ceeeecCC
Confidence 889999999999999999999999988 3344444455568999999999999999999999999999988 55566666
Q ss_pred ccc
Q 001184 674 RAY 676 (1130)
Q Consensus 674 ~~~ 676 (1130)
|..
T Consensus 299 h~K 301 (311)
T KOG0315|consen 299 HHK 301 (311)
T ss_pred ccc
Confidence 543
No 30
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=5.5e-33 Score=285.37 Aligned_cols=524 Identities=16% Similarity=0.199 Sum_probs=379.8
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCC--------cEEEEe-
Q 001184 414 RVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK--------LIRVWD- 484 (1130)
Q Consensus 414 ~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~--------~v~iwd- 484 (1130)
.+-+-|.|..+.... +.+.+++.+...+- -+.+|+..|.|++.+||-- .+++|-.-| .|++||
T Consensus 70 Nly~lptgE~vyfvA--~V~Vl~n~ee~~Qr----~y~GH~ddikc~~vHPdri--~vatGQ~ag~~g~~~~phvriWds 141 (626)
T KOG2106|consen 70 NLYLLPTGELVYFVA--AVGVLYNWEERSQR----HYLGHNDDIKCMAVHPDRI--RVATGQGAGTSGRPLQPHVRIWDS 141 (626)
T ss_pred eeEEccCccEEEEec--cEEEEEeehhhhcc----cccCCCCceEEEeecCCce--eeccCcccccCCCcCCCeeeeccc
Confidence 466778887665432 35667777653211 3679999999999999876 566654443 599999
Q ss_pred cCCCeeeEecCCCcCEEEEeecccCCccEEEEE--ecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCC-eEEEeee
Q 001184 485 LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFST--AVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGS-RLFSCGT 561 (1130)
Q Consensus 485 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~--s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~ 561 (1130)
.+-..++.+......|.+++|++...|.++... +.+..+.+||...+............+....|.|.+. .+++++
T Consensus 142 v~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~G- 220 (626)
T KOG2106|consen 142 VTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCG- 220 (626)
T ss_pred ccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeC-
Confidence 888888888888889999999998887777665 4566789999998888877777788899999999655 455554
Q ss_pred cCCCCcEEEEeeCCCCceeE---EEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceE
Q 001184 562 SKEGDSHLVEWNESEGALKR---TYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRL 638 (1130)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v 638 (1130)
.+.++.|+.+.+.+.+ .+..+....|.|++|.++|. +++|..+|.|.||+..+.+..+.... |.+.|.++
T Consensus 221 ----k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~a--H~ggv~~L 293 (626)
T KOG2106|consen 221 ----KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHA--HDGGVFSL 293 (626)
T ss_pred ----CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeee--cCCceEEE
Confidence 8999999999886654 45555566899999999875 78999999999999988777776664 44589999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccc
Q 001184 639 RFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTIL 718 (1130)
Q Consensus 639 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~ 718 (1130)
+.-.+|.+|- |+.|+.|..||- ..+..+..+-
T Consensus 294 ~~lr~GtllS-GgKDRki~~Wd~--~y~k~r~~el--------------------------------------------- 325 (626)
T KOG2106|consen 294 CMLRDGTLLS-GGKDRKIILWDD--NYRKLRETEL--------------------------------------------- 325 (626)
T ss_pred EEecCccEee-cCccceEEeccc--cccccccccC---------------------------------------------
Confidence 9999997665 999999999992 2122221111
Q ss_pred cCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCC
Q 001184 719 NGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNR 798 (1130)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~ 798 (1130)
|+ ..+.|..++-. +.-++++..-+.|..=.+
T Consensus 326 ------------------------------------------Pe---~~G~iRtv~e~--~~di~vGTtrN~iL~Gt~-- 356 (626)
T KOG2106|consen 326 ------------------------------------------PE---QFGPIRTVAEG--KGDILVGTTRNFILQGTL-- 356 (626)
T ss_pred ------------------------------------------ch---hcCCeeEEecC--CCcEEEeeccceEEEeee--
Confidence 00 11222222211 111444444333322111
Q ss_pred CCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCe
Q 001184 799 TEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPAS 877 (1130)
Q Consensus 799 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i 877 (1130)
+++.-+. ..+|......++..|+...+++++ |+.+++|+ ..++..+.. ...++
T Consensus 357 --------------------~~~f~~~---v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~ 410 (626)
T KOG2106|consen 357 --------------------ENGFTLT---VQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPA 410 (626)
T ss_pred --------------------cCCceEE---EEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCce
Confidence 1111111 116888999999999999999888 99999999 444444433 35678
Q ss_pred EEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeE
Q 001184 878 TFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAI 957 (1130)
Q Consensus 878 ~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~ 957 (1130)
.|+.|+| .+ .+|.|+..|...+.|.++..++..-.. ..++++++|+|||.+||.++.|+.|++|.++.+........
T Consensus 411 ~~~~fhp-sg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~ 487 (626)
T KOG2106|consen 411 ECADFHP-SG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVG 487 (626)
T ss_pred eEeeccC-cc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEee
Confidence 9999999 67 999999999999999999766655554 88999999999999999999999999999987654332222
Q ss_pred eccCCCCCCCeEEEEEcCCCcEEEE-EcCCcEEEEECCCceeeee--------------e-ecCCCCCCCeEEEEECCCC
Q 001184 958 QLPAGKLPVGETRVQFHSDQVRLLV-NHETQLAIYDGSKMECIRQ--------------W-VPQDVLSSPISSAAYSCNS 1021 (1130)
Q Consensus 958 ~~~~~~~~~~v~~~~~s~d~~~l~~-~~d~~i~v~d~~~~~~~~~--------------~-~~~~~~~~~v~~v~~s~dg 1021 (1130)
. .+...++.+.||+|++++.+ +.|..|..|....-..+.. + .....++..|..++-+.++
T Consensus 488 k----~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~ 563 (626)
T KOG2106|consen 488 K----CSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCE 563 (626)
T ss_pred e----ecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhh
Confidence 2 12278999999999999998 6788999995432221111 1 1113456788888999999
Q ss_pred CEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeC
Q 001184 1022 QLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEP 1092 (1130)
Q Consensus 1022 ~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~ 1092 (1130)
+++|+|.+.|.|++|...--+..+.+ |.| -+|+..+.+++|...+. .|++.+.|.+|..|++
T Consensus 564 ~~lA~gdd~g~v~lf~yPc~s~rA~~--he~------~ghs~~vt~V~Fl~~d~-~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 564 KLLASGDDFGKVHLFSYPCSSPRAPS--HEY------GGHSSHVTNVAFLCKDS-HLISTGKDTSIMQWRL 625 (626)
T ss_pred hhhhccccCceEEEEccccCCCcccc--eee------ccccceeEEEEEeeCCc-eEEecCCCceEEEEEe
Confidence 99999999999999998765544332 232 24555667788877655 5555559999999987
No 31
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-35 Score=292.54 Aligned_cols=291 Identities=21% Similarity=0.339 Sum_probs=265.3
Q ss_pred cceeeeccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEE
Q 001184 338 RAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAW 417 (1130)
Q Consensus 338 ~~~~~~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 417 (1130)
....+..+|...|+.+-|+|+-. ++++++.|++|++||..+|++.. .++||...|..++|
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~-------------------~LrGHt~sv~di~~ 158 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELER-------------------SLRGHTDSVFDISF 158 (406)
T ss_pred CchhhhhccccceeeeeeccCce-EEEEecCCceEEEEEccchhhhh-------------------hhhccccceeEEEE
Confidence 34455567999999999999986 79999999999999999999865 48899999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCC
Q 001184 418 SPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGH 496 (1130)
Q Consensus 418 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h 496 (1130)
+..|++||+++.|-.+++||.++- .+....+.+|...|.+++|-|-|. ++++++.|.+|+.|+ .+|.++++|.+|
T Consensus 159 ~a~Gk~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~gd--~ilS~srD~tik~We~~tg~cv~t~~~h 234 (406)
T KOG0295|consen 159 DASGKYLATCSSDLSAKLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLGD--HILSCSRDNTIKAWECDTGYCVKTFPGH 234 (406)
T ss_pred ecCccEEEecCCccchhheeHHHH--HHHHHHhcCcccceeeEEEEecCC--eeeecccccceeEEecccceeEEeccCc
Confidence 999999999999999999999873 233346789999999999999998 899999999999999 999999999999
Q ss_pred CcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecC---------------CCeEEEeee
Q 001184 497 EAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSAD---------------GSRLFSCGT 561 (1130)
Q Consensus 497 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~---------------~~~l~~~~~ 561 (1130)
...|..+.. ..||.++++++.|.++++|-+.+.++...+..|..+|.+++|.|. +.++.+++.
T Consensus 235 ~ewvr~v~v--~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~Sr 312 (406)
T KOG0295|consen 235 SEWVRMVRV--NQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSR 312 (406)
T ss_pred hHhEEEEEe--cCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecc
Confidence 999999877 578899999999999999999999999999999999999999764 246777765
Q ss_pred cCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEc
Q 001184 562 SKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFN 641 (1130)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s 641 (1130)
|++|++||+.++.++.++.+|.+ .|..++|+|.|+||+++.+|+++++||+.++++...+..+.+ -++++.|+
T Consensus 313 ----DktIk~wdv~tg~cL~tL~ghdn-wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~h--fvt~lDfh 385 (406)
T KOG0295|consen 313 ----DKTIKIWDVSTGMCLFTLVGHDN-WVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEH--FVTSLDFH 385 (406)
T ss_pred ----cceEEEEeccCCeEEEEEecccc-eeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcc--eeEEEecC
Confidence 99999999999999999999877 899999999999999999999999999999999999998877 68999999
Q ss_pred CCCCEEEEEeCCCcEEEEEc
Q 001184 642 KEGNLLVVTTADQGIKILAN 661 (1130)
Q Consensus 642 ~~~~~l~~~~~dg~i~iw~~ 661 (1130)
.+..++++|+-|.++++|..
T Consensus 386 ~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 386 KTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred CCCceEEeccccceeeeeec
Confidence 99999999999999999974
No 32
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.4e-33 Score=302.14 Aligned_cols=480 Identities=18% Similarity=0.270 Sum_probs=350.5
Q ss_pred ecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe
Q 001184 405 VKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD 484 (1130)
Q Consensus 405 ~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd 484 (1130)
+...+..|..++|+|...+++++-..|.|.+||.+-+.++. .+..|.++|..++|+|.+. +++|||+|-.|++|+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~---rFdeHdGpVRgv~FH~~qp--lFVSGGDDykIkVWn 79 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID---RFDEHDGPVRGVDFHPTQP--LFVSGGDDYKIKVWN 79 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh---hhhccCCccceeeecCCCC--eEEecCCccEEEEEe
Confidence 34456789999999999999999999999999999988776 6889999999999999999 999999999999999
Q ss_pred -cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecC
Q 001184 485 -LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSK 563 (1130)
Q Consensus 485 -~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1130)
.+.+++.++.||-+.|..+.||+.- .+++|+|+|.+|+||++.+.+++..+.+|.+.|+|..|.|....+++++-
T Consensus 80 Yk~rrclftL~GHlDYVRt~~FHhey--PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSL-- 155 (1202)
T KOG0292|consen 80 YKTRRCLFTLLGHLDYVRTVFFHHEY--PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASL-- 155 (1202)
T ss_pred cccceehhhhccccceeEEeeccCCC--ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecc--
Confidence 8999999999999999999998654 79999999999999999999999999999999999999999999999997
Q ss_pred CCCcEEEEeeCCCCc-----------------------------eeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEE
Q 001184 564 EGDSHLVEWNESEGA-----------------------------LKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKF 614 (1130)
Q Consensus 564 ~~~~~i~~wd~~~~~-----------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v 614 (1130)
|.+|++||+..-+ ....+.||.. .|+-++|+|.-..|++|++|+.|++
T Consensus 156 --DQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDR-GVNwaAfhpTlpliVSG~DDRqVKl 232 (1202)
T KOG0292|consen 156 --DQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDR-GVNWAAFHPTLPLIVSGADDRQVKL 232 (1202)
T ss_pred --cceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccccc-ccceEEecCCcceEEecCCcceeeE
Confidence 8999999985211 1234566555 7899999999999999999999999
Q ss_pred EeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceee
Q 001184 615 WDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVT 694 (1130)
Q Consensus 615 wd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1130)
|.+..-+.-..-...+|...|.++-|+|...++++.+.|++|++||+.... .++.+.
T Consensus 233 WrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt-~v~tfr---------------------- 289 (1202)
T KOG0292|consen 233 WRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRT-SVQTFR---------------------- 289 (1202)
T ss_pred EEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEeccccc-ceeeee----------------------
Confidence 999876655444445666689999999999999999999999999986651 111110
Q ss_pred ccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEE
Q 001184 695 TITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLL 774 (1130)
Q Consensus 695 ~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 774 (1130)
....+...++
T Consensus 290 ----------------------------------------------------------------------rendRFW~la 299 (1202)
T KOG0292|consen 290 ----------------------------------------------------------------------RENDRFWILA 299 (1202)
T ss_pred ----------------------------------------------------------------------ccCCeEEEEE
Confidence 0234556677
Q ss_pred EeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEeCC
Q 001184 775 YTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGG 854 (1130)
Q Consensus 775 ~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg 854 (1130)
..|..+.+++ +.|+-+.+|.++. +.++.++ .+..|...-+.
T Consensus 300 ahP~lNLfAA-gHDsGm~VFkleR----------------------------------Erpa~~v----~~n~LfYvkd~ 340 (1202)
T KOG0292|consen 300 AHPELNLFAA-GHDSGMIVFKLER----------------------------------ERPAYAV----NGNGLFYVKDR 340 (1202)
T ss_pred ecCCcceeee-ecCCceEEEEEcc----------------------------------cCceEEE----cCCEEEEEccc
Confidence 7888875555 4555555665432 3333333 23344444588
Q ss_pred eEEEEECCCceeEE--EEeCC---CCCeEEEEEeCCCCcEEEEEeCC-CcEEEEEeecCeEE-----EEEecCCCCeeEE
Q 001184 855 KVSLFNMMNFKVMT--TFMSP---PPASTFLAFHPQDNNIIAIGMED-STIQIYNVRVDEVK-----TKLKGHQKHITGL 923 (1130)
Q Consensus 855 ~i~iwd~~~~~~~~--~~~~~---~~~i~~l~~sp~~~~~lasg~~d-g~v~iwd~~~~~~~-----~~l~~h~~~V~~l 923 (1130)
.|+-+|+.+.+-.. .++.. ..+..++.++|..+..+++...| |...++.+...... ...++ ....++
T Consensus 341 ~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~~~k~--tG~~a~ 418 (1202)
T KOG0292|consen 341 FIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKDVKKG--TGEGAL 418 (1202)
T ss_pred eEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCchhhhcC--CCCceE
Confidence 99999998854433 33332 35788999999555555554433 44555555432110 01111 112222
Q ss_pred EEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCceeeeeee
Q 001184 924 AFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWV 1003 (1130)
Q Consensus 924 ~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~ 1003 (1130)
-.+ ..++.+---.+..+.+-++.+..... +. .+.....+.+..+|.+|+. +...|.+||+.....+..+.
T Consensus 419 fva-rNrfavl~k~~~~v~ik~l~N~vtkk---l~-----~~~~~~~IF~ag~g~lll~-~~~~v~lfdvQq~~~~~si~ 488 (1202)
T KOG0292|consen 419 FVA-RNRFAVLDKSNEQVVIKNLKNKVTKK---LL-----LPESTDDIFYAGTGNLLLR-SPDSVTLFDVQQKKKVGSIK 488 (1202)
T ss_pred EEE-ecceEEEEecCcceEEecccchhhhc---cc-----CcccccceeeccCccEEEE-cCCeEEEEEeecceEEEEEe
Confidence 222 22233323335566666666522111 11 1134556777777766654 55689999999998888876
Q ss_pred cCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCccccccc
Q 001184 1004 PQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRI 1047 (1130)
Q Consensus 1004 ~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~ 1047 (1130)
.. .|..++||+|+.+++.-+ -.+|.|.+.. .+.++.+
T Consensus 489 ~s-----~vkyvvws~dm~~vAll~-Kh~i~i~~kk-L~l~~si 525 (1202)
T KOG0292|consen 489 VS-----KVKYVVWSNDMSRVALLS-KHTITIADKK-LELLCSI 525 (1202)
T ss_pred cC-----ceeEEEEcCccchhhhcc-cceEEEEecc-hhheecc
Confidence 54 899999999999888777 5678888743 3344443
No 33
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3.8e-34 Score=268.02 Aligned_cols=296 Identities=15% Similarity=0.242 Sum_probs=253.0
Q ss_pred ccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCc--eeEEEecccC
Q 001184 511 IHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA--LKRTYIGFRK 588 (1130)
Q Consensus 511 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~ 588 (1130)
.-+|++++.|.+||+|...++.+..++......|+.+.+.|+++.|++++ ...|++||++++. ++.+|.+|..
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-----~qhvRlyD~~S~np~Pv~t~e~h~k 84 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-----NQHVRLYDLNSNNPNPVATFEGHTK 84 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-----CCeeEEEEccCCCCCceeEEeccCC
Confidence 35899999999999999999999999999999999999999999999997 6789999998865 5889999877
Q ss_pred ceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhh
Q 001184 589 KSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRAL 668 (1130)
Q Consensus 589 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 668 (1130)
.|.++.|..+|+++++|++||+++|||++...+.+.+... .+|+++..+|+...|++|..+|.|++||+.... ..
T Consensus 85 -NVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~---spVn~vvlhpnQteLis~dqsg~irvWDl~~~~-c~ 159 (311)
T KOG0315|consen 85 -NVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN---SPVNTVVLHPNQTELISGDQSGNIRVWDLGENS-CT 159 (311)
T ss_pred -ceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC---CCcceEEecCCcceEEeecCCCcEEEEEccCCc-cc
Confidence 7999999999999999999999999999996666666543 489999999999999999999999999997661 11
Q ss_pred hhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeecc
Q 001184 669 RAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTE 748 (1130)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~ 748 (1130)
.. +
T Consensus 160 ~~-------------------------l---------------------------------------------------- 162 (311)
T KOG0315|consen 160 HE-------------------------L---------------------------------------------------- 162 (311)
T ss_pred cc-------------------------c----------------------------------------------------
Confidence 10 0
Q ss_pred ccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccC
Q 001184 749 IVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDV 828 (1130)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 828 (1130)
+| +....|.++.+.|||..++++.+.|...+|++....... .+.....
T Consensus 163 -----------iP---e~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s------------------~l~P~~k 210 (311)
T KOG0315|consen 163 -----------IP---EDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTAS------------------ELEPVHK 210 (311)
T ss_pred -----------CC---CCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccc------------------cceEhhh
Confidence 11 144678899999999999999999999999976522111 1111111
Q ss_pred CCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCCc-eeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeec
Q 001184 829 PENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNF-KVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRV 906 (1130)
Q Consensus 829 ~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~ 906 (1130)
...|.+.+..+.+|||+++||+++ |.+++||+.++. +....+.+|...+...+||. |+.+|++|+.|+.+++|++..
T Consensus 211 ~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~rlW~~~~ 289 (311)
T KOG0315|consen 211 FQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTARLWDLSA 289 (311)
T ss_pred eecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCceeeccccc
Confidence 236899999999999999999998 899999999998 66677889999999999999 999999999999999999999
Q ss_pred CeEEEEEecCCCCeeEEEEc
Q 001184 907 DEVKTKLKGHQKHITGLAFS 926 (1130)
Q Consensus 907 ~~~~~~l~~h~~~V~~l~~s 926 (1130)
++.+....+|.....|++..
T Consensus 290 ~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 290 GKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred CceeeecCCcccccEEEEee
Confidence 99999999999988888764
No 34
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=6.6e-32 Score=277.46 Aligned_cols=526 Identities=17% Similarity=0.246 Sum_probs=380.8
Q ss_pred EEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeCC
Q 001184 351 VSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTK 430 (1130)
Q Consensus 351 ~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d 430 (1130)
..+-+-|.|..+..++ +.+.+++++..... .+.+|...|.|++.+||.-.+|+|-..
T Consensus 69 ~Nly~lptgE~vyfvA---~V~Vl~n~ee~~Qr--------------------~y~GH~ddikc~~vHPdri~vatGQ~a 125 (626)
T KOG2106|consen 69 NNLYLLPTGELVYFVA---AVGVLYNWEERSQR--------------------HYLGHNDDIKCMAVHPDRIRVATGQGA 125 (626)
T ss_pred ceeEEccCccEEEEec---cEEEEEeehhhhcc--------------------cccCCCCceEEEeecCCceeeccCccc
Confidence 3455667776333333 25677777543322 367999999999999999999987443
Q ss_pred C--------eEEEEEecCCccceeeeeeecCCCCeeEEEEecCC--CceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcC
Q 001184 431 H--------LIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPN--KQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAP 499 (1130)
Q Consensus 431 ~--------~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~--~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~ 499 (1130)
| .+++||..+-..+ +.+..-...|.+++|++-. ..+..+--+.+..+.+|| ..+......+.....
T Consensus 126 g~~g~~~~phvriWdsv~L~TL---~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~ 202 (626)
T KOG2106|consen 126 GTSGRPLQPHVRIWDSVTLSTL---HVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEV 202 (626)
T ss_pred ccCCCcCCCeeeecccccceee---eeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccce
Confidence 3 5999997764433 3455666789999999843 322333345677899999 888777777777778
Q ss_pred EEEEeecccCCccEEEEEecCCcEEEEEccCCcceee---ecC-CCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCC
Q 001184 500 VYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVD---YDA-PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES 575 (1130)
Q Consensus 500 v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~---~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1130)
|....|+|... +++++ ...+.+.+|+++.+..... +.. ....|.+++|.++|..+ ++ |.+|.|.+|+..
T Consensus 203 v~~a~FHPtd~-nliit-~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdvi-Tg----DS~G~i~Iw~~~ 275 (626)
T KOG2106|consen 203 VFLATFHPTDP-NLIIT-CGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVI-TG----DSGGNILIWSKG 275 (626)
T ss_pred EEEEEeccCCC-cEEEE-eCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEE-ee----cCCceEEEEeCC
Confidence 88899998764 44444 4568999999887654432 222 22579999999999865 33 348999999998
Q ss_pred CCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCc
Q 001184 576 EGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQG 655 (1130)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~ 655 (1130)
+.+..+....|. +.|.+++.-.+|. |++|+.|+.|..|| .+-+.++..+.+...+.|..++-...+ +++|...+.
T Consensus 276 ~~~~~k~~~aH~-ggv~~L~~lr~Gt-llSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~d--i~vGTtrN~ 350 (626)
T KOG2106|consen 276 TNRISKQVHAHD-GGVFSLCMLRDGT-LLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGD--ILVGTTRNF 350 (626)
T ss_pred CceEEeEeeecC-CceEEEEEecCcc-EeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCc--EEEeeccce
Confidence 888888777554 4899999988875 55699999999999 566666666666666677777654433 777776666
Q ss_pred EEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCccccc
Q 001184 656 IKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLE 735 (1130)
Q Consensus 656 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (1130)
|..=.++++.. +.
T Consensus 351 iL~Gt~~~~f~-------------------------------~~------------------------------------ 363 (626)
T KOG2106|consen 351 ILQGTLENGFT-------------------------------LT------------------------------------ 363 (626)
T ss_pred EEEeeecCCce-------------------------------EE------------------------------------
Confidence 65433333210 00
Q ss_pred ccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCccccccccccc
Q 001184 736 DISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQH 815 (1130)
Q Consensus 736 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 815 (1130)
. .+|......++..|+..++++++.|+.+++|+-.. ..
T Consensus 364 ------------------------v---~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k---------------~~ 401 (626)
T KOG2106|consen 364 ------------------------V---QGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHK---------------LE 401 (626)
T ss_pred ------------------------E---EecccceeeEEcCCChhheeeccCcceEEEccCCc---------------ee
Confidence 0 22666778889999999999999999999997111 12
Q ss_pred ccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEe
Q 001184 816 WQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGM 894 (1130)
Q Consensus 816 w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~ 894 (1130)
|.. ....++.|+.|.|.| .+|.|. .|...+.|.++...+..-.. ..++++++|+| +|.+||+|+
T Consensus 402 wt~------------~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp-~G~~lAvgs 466 (626)
T KOG2106|consen 402 WTK------------IIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSP-DGAFLAVGS 466 (626)
T ss_pred EEE------------EecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcC-CCCEEEEec
Confidence 222 246788999999999 888888 89999999999666655444 88999999999 999999999
Q ss_pred CCCcEEEEEeecC-eEEEEE-ecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccce------------eeEecc
Q 001184 895 EDSTIQIYNVRVD-EVKTKL-KGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKS------------IAIQLP 960 (1130)
Q Consensus 895 ~dg~v~iwd~~~~-~~~~~l-~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~------------~~~~~~ 960 (1130)
.|+.|+||.+..+ ...... +.|..+|+.+.||+|+++|.+.+.|-.|..|....-+.... .-....
T Consensus 467 ~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~ 546 (626)
T KOG2106|consen 467 HDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVF 546 (626)
T ss_pred CCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEe
Confidence 9999999999754 333222 23448899999999999999999999999994333221111 001111
Q ss_pred CCCCCCCeEEEEEcCCCcEEEEEc-CCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeC
Q 001184 961 AGKLPVGETRVQFHSDQVRLLVNH-ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDA 1038 (1130)
Q Consensus 961 ~~~~~~~v~~~~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~ 1038 (1130)
.+.....+..++-+....+++++. .+.+++|...--+....+..-.+|++.|++++|+.+..+|.+.+.|..|..|++
T Consensus 547 g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 547 GGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred cccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 222334455566677777888864 689999998766655555555567999999999999999998889999999986
No 35
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=8.6e-34 Score=270.78 Aligned_cols=249 Identities=21% Similarity=0.277 Sum_probs=215.3
Q ss_pred eeecCCCccEEEEEEcCC-CCEEEEEeCCCeEEEEEecCCcc--ceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCc
Q 001184 403 AIVKDSSISVSRVAWSPD-GNFIGVAFTKHLIHLYTYQGSND--LCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKL 479 (1130)
Q Consensus 403 ~~~~~h~~~V~~v~~spd-g~~las~~~d~~i~vwd~~~~~~--~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~ 479 (1130)
.++++|.+.|+.++..+. ...|.+++.|.++.+|++..... -.....+.||...|..++.++||+ +.++++.|++
T Consensus 9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~--~alS~swD~~ 86 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGN--FALSASWDGT 86 (315)
T ss_pred eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCc--eEEeccccce
Confidence 378999999999999996 56889999999999999865421 123447899999999999999999 8999999999
Q ss_pred EEEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCC-CccEEEEEEecC--CCe
Q 001184 480 IRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP-GLWCTTMLYSAD--GSR 555 (1130)
Q Consensus 480 v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~s~~--~~~ 555 (1130)
+++|| .+|+..+.|.||...|.+++|++ |...+++|+.|.+|++|+.-........... ..+|.++.|+|+ ...
T Consensus 87 lrlWDl~~g~~t~~f~GH~~dVlsva~s~--dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~ 164 (315)
T KOG0279|consen 87 LRLWDLATGESTRRFVGHTKDVLSVAFST--DNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPI 164 (315)
T ss_pred EEEEEecCCcEEEEEEecCCceEEEEecC--CCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcE
Confidence 99999 88899999999999999999965 4479999999999999998754443333333 679999999998 678
Q ss_pred EEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCc
Q 001184 556 LFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSL 635 (1130)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i 635 (1130)
|++++. |++|++||+++.+....+.+|.. .++.++++|||..+++|+.||.+.+||++.++.++.+... ..|
T Consensus 165 Ivs~s~----DktvKvWnl~~~~l~~~~~gh~~-~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~---~~v 236 (315)
T KOG0279|consen 165 IVSASW----DKTVKVWNLRNCQLRTTFIGHSG-YVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAF---DIV 236 (315)
T ss_pred EEEccC----CceEEEEccCCcchhhccccccc-cEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCC---CeE
Confidence 888876 99999999999999999999776 8999999999999999999999999999999998887643 379
Q ss_pred ceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 636 PRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 636 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
.+++|+|+...|+.+. +..|+|||+++.
T Consensus 237 ~sl~fspnrywL~~at-~~sIkIwdl~~~ 264 (315)
T KOG0279|consen 237 NSLCFSPNRYWLCAAT-ATSIKIWDLESK 264 (315)
T ss_pred eeEEecCCceeEeecc-CCceEEEeccch
Confidence 9999999877776664 456999999877
No 36
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=3.2e-33 Score=276.77 Aligned_cols=338 Identities=17% Similarity=0.263 Sum_probs=285.2
Q ss_pred eeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEE
Q 001184 449 EIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWL 527 (1130)
Q Consensus 449 ~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd 527 (1130)
.|..|++.|.+++.+|+.+ +++||+.|....+|+ .+|..+..+.+|+..|+++.|+ .++.+|+||+.+|.|++|.
T Consensus 59 tF~~H~~svFavsl~P~~~--l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fs--hdgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNN--LVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFS--HDGTLLATGDMSGKVLVFK 134 (399)
T ss_pred ehhhcCCceEEEEeCCCCc--eEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEc--cCceEEEecCCCccEEEEE
Confidence 6889999999999999777 899999999999999 8899999999999999999995 5668999999999999999
Q ss_pred ccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEe
Q 001184 528 YDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAG 607 (1130)
Q Consensus 528 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 607 (1130)
..++.....+......+.-+.|.|-+..|++|+. +|.+.+|.+.++...+.+.||.. ++++-.|.|+|++++++.
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~----DGsvWmw~ip~~~~~kv~~Gh~~-~ct~G~f~pdGKr~~tgy 209 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGST----DGSVWMWQIPSQALCKVMSGHNS-PCTCGEFIPDGKRILTGY 209 (399)
T ss_pred cccCceEEEeecccCceEEEEecccccEEEeecC----CCcEEEEECCCcceeeEecCCCC-CcccccccCCCceEEEEe
Confidence 9999999988877778999999999999999986 99999999999888899999766 899999999999999999
Q ss_pred CCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccc
Q 001184 608 EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKV 687 (1130)
Q Consensus 608 ~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1130)
.||+|++||..+++++..+....+. ...++.++..+..++.|..++.+.+-+..+++ .+...
T Consensus 210 ~dgti~~Wn~ktg~p~~~~~~~e~~-~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgK-Vv~~~---------------- 271 (399)
T KOG0296|consen 210 DDGTIIVWNPKTGQPLHKITQAEGL-ELPCISLNLAGSTLTKGNSEGVACGVNNGSGK-VVNCN---------------- 271 (399)
T ss_pred cCceEEEEecCCCceeEEecccccC-cCCccccccccceeEeccCCccEEEEccccce-EEEec----------------
Confidence 9999999999999999888755432 57889999999999999999998887654441 00000
Q ss_pred cccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCc
Q 001184 688 PGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSA 767 (1130)
Q Consensus 688 ~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 767 (1130)
T Consensus 272 -------------------------------------------------------------------------------- 271 (399)
T KOG0296|consen 272 -------------------------------------------------------------------------------- 271 (399)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCE
Q 001184 768 SKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSY 847 (1130)
Q Consensus 768 ~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~ 847 (1130)
.+.+..+.. -.+.....|.++.++..-.+
T Consensus 272 --------n~~~~~l~~-------------------------------------------~~e~~~esve~~~~ss~lpL 300 (399)
T KOG0296|consen 272 --------NGTVPELKP-------------------------------------------SQEELDESVESIPSSSKLPL 300 (399)
T ss_pred --------CCCCccccc-------------------------------------------cchhhhhhhhhcccccccch
Confidence 000000000 00012334455556667778
Q ss_pred EEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEc
Q 001184 848 VMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFS 926 (1130)
Q Consensus 848 la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s 926 (1130)
.|+|+ ||+|.|||+...+....+. |...|+.+.|-+ ..+|++++.||.|+.||.++|+++.++.||...|.+++++
T Consensus 301 ~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls 377 (399)
T KOG0296|consen 301 AACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALS 377 (399)
T ss_pred hhcccccceEEEEecccchhheecc-CCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEecCchheeEEEEc
Confidence 88888 9999999999877766665 777899999987 4688899999999999999999999999999999999999
Q ss_pred cCCCeEEEEeCCCcEEEEECC
Q 001184 927 TNLNILVSSGSDAQLIFWNTD 947 (1130)
Q Consensus 927 ~dg~~L~s~s~Dg~i~vwd~~ 947 (1130)
|++++++++|.|++.+|++..
T Consensus 378 ~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 378 PQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred CCCcEEEEecCCCeEEEEecC
Confidence 999999999999999999864
No 37
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.4e-33 Score=264.72 Aligned_cols=285 Identities=20% Similarity=0.332 Sum_probs=235.0
Q ss_pred cCCCCEEEEEEecC-CCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCE
Q 001184 345 HQGSSVVSMDFHPF-HHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNF 423 (1130)
Q Consensus 345 ~h~~~V~~v~fspd-g~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 423 (1130)
+|+++|+.+||+|- |. +||+|+.|..|+||+...+.-... ...+-.+|+..|.++||+|.|++
T Consensus 12 gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~c---------------k~vld~~hkrsVRsvAwsp~g~~ 75 (312)
T KOG0645|consen 12 GHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTC---------------KTVLDDGHKRSVRSVAWSPHGRY 75 (312)
T ss_pred CCCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEE---------------EEeccccchheeeeeeecCCCcE
Confidence 59999999999998 76 899999999999999985332211 11134589999999999999999
Q ss_pred EEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCC---CeeeEecCCCcC
Q 001184 424 IGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSG---RKLFQFEGHEAP 499 (1130)
Q Consensus 424 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~---~~~~~~~~h~~~ 499 (1130)
||+|+.|.++.||.-..++ .....+++||...|.+++|+++|. +||+|+.|+.|-||. ..+ .++..+.+|+..
T Consensus 76 La~aSFD~t~~Iw~k~~~e-fecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL~~HtqD 152 (312)
T KOG0645|consen 76 LASASFDATVVIWKKEDGE-FECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQD 152 (312)
T ss_pred EEEeeccceEEEeecCCCc-eeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeeecccccc
Confidence 9999999999999977654 566778999999999999999999 899999999999999 322 467889999999
Q ss_pred EEEEeecccCCccEEEEEecCCcEEEEEccC---CcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCC
Q 001184 500 VYSVCPHQKENIHFIFSTAVDGKIKAWLYDN---VGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE 576 (1130)
Q Consensus 500 v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1130)
|..+.|||.. .+|++++.|++|++|+-.. -.+..++.++...|.+++|.+.|..|++++. ++++.||-..
T Consensus 153 VK~V~WHPt~--dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd----D~tv~Iw~~~- 225 (312)
T KOG0645|consen 153 VKHVIWHPTE--DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSD----DGTVSIWRLY- 225 (312)
T ss_pred ccEEEEcCCc--ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecC----CcceEeeeec-
Confidence 9999999877 5999999999999997663 2356788889889999999999999999975 9999999855
Q ss_pred CceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc------eeEEEeccCCCCCcceEEEcCC-CCEEEE
Q 001184 577 GALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVN------MLTSTEAEGGLPSLPRLRFNKE-GNLLVV 649 (1130)
Q Consensus 577 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~------~~~~~~~~~~~~~i~~v~~s~~-~~~l~~ 649 (1130)
..+.+.+...+..+.|. ...|++++.|+.|++|.-...- .+.. ....|...|+++.|+|. .++|++
T Consensus 226 ----~~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~-~~~aHe~dVNsV~w~p~~~~~L~s 298 (312)
T KOG0645|consen 226 ----TDLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAK-KEGAHEVDVNSVQWNPKVSNRLAS 298 (312)
T ss_pred ----cCcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHh-hhcccccccceEEEcCCCCCceee
Confidence 23344455578888887 5689999999999999765421 1111 11234448999999994 788999
Q ss_pred EeCCCcEEEEEcC
Q 001184 650 TTADQGIKILANA 662 (1130)
Q Consensus 650 ~~~dg~i~iw~~~ 662 (1130)
+++||.+++|.+.
T Consensus 299 ~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 299 GGDDGIVNFWELE 311 (312)
T ss_pred cCCCceEEEEEec
Confidence 9999999999864
No 38
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=5.1e-35 Score=293.09 Aligned_cols=283 Identities=20% Similarity=0.308 Sum_probs=248.7
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 425 (1130)
-+..|..|.|.|+|++ |++|+..|.+.+|+..+- .|+ .++..|..+|.++.||++|.+++
T Consensus 95 vkc~V~~v~WtPeGRR-Lltgs~SGEFtLWNg~~f------nFE-------------tilQaHDs~Vr~m~ws~~g~wmi 154 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRR-LLTGSQSGEFTLWNGTSF------NFE-------------TILQAHDSPVRTMKWSHNGTWMI 154 (464)
T ss_pred cccceeeEEEcCCCce-eEeecccccEEEecCcee------eHH-------------HHhhhhcccceeEEEccCCCEEE
Confidence 4568999999999997 889999999999997321 111 15779999999999999999999
Q ss_pred EEeCCCeEEEEEecCCccceeeeeeecCC-CCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEE
Q 001184 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHV-GGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSV 503 (1130)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~-~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~ 503 (1130)
+|+.+|.|++|+..-.. ++ .+.+|. ..|++++|+|.+. .+++|++||+|+||| ...+.-..+.||.-.|.++
T Consensus 155 SgD~gG~iKyWqpnmnn-Vk---~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksv 228 (464)
T KOG0284|consen 155 SGDKGGMIKYWQPNMNN-VK---IIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSV 228 (464)
T ss_pred EcCCCceEEecccchhh-hH---HhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCCchhheeccCCCCccee
Confidence 99999999999986543 22 345554 8999999999888 799999999999999 7788888889999999999
Q ss_pred eecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEE
Q 001184 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTY 583 (1130)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 583 (1130)
+|+|.. .+|+++|.|..|++||.+++.++.++..|...|..+.|+|++++|++++. |..++++|+++.+.++++
T Consensus 229 dWHP~k--gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~sk----D~~~kv~DiR~mkEl~~~ 302 (464)
T KOG0284|consen 229 DWHPTK--GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSK----DQSCKVFDIRTMKELFTY 302 (464)
T ss_pred ccCCcc--ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccC----CceEEEEehhHhHHHHHh
Confidence 999876 68999999999999999999999999999999999999999999999987 889999999999999999
Q ss_pred ecccCceeEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcC
Q 001184 584 IGFRKKSAGVVQFDTTRN-RILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANA 662 (1130)
Q Consensus 584 ~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~ 662 (1130)
.+|.. .+.++.|+|-.. .|.+|+.||.|..|.+...+++..+. ..+...|.+++|+|-|.+|++|+.|.++++|.-.
T Consensus 303 r~Hkk-dv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~-~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 303 RGHKK-DVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIP-PAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred hcchh-hheeeccccccccceeeccCCCceEEEeccccccccCCC-cccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 99887 899999999764 77779999999999998666655554 3455689999999999999999999999999743
No 39
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.7e-33 Score=271.44 Aligned_cols=285 Identities=19% Similarity=0.253 Sum_probs=247.6
Q ss_pred eccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCC
Q 001184 343 TMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN 422 (1130)
Q Consensus 343 ~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~ 422 (1130)
..+|++.|..+.|+|+|. ++|+|+.|..|.+|++.....-. .++++|+++|..+.|.+|++
T Consensus 43 l~gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdceN~------------------~~lkgHsgAVM~l~~~~d~s 103 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDCENF------------------WVLKGHSGAVMELHGMRDGS 103 (338)
T ss_pred cCCCcceEEEEEECCCCC-eEeecCCcceEEEEeccccccce------------------eeeccccceeEeeeeccCCC
Confidence 457999999999999998 69999999999999976543322 15789999999999999999
Q ss_pred EEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEE
Q 001184 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVY 501 (1130)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~ 501 (1130)
.|++++.|++|+.||+++|++.+ .+++|..-|+++.-+.-|.. ++.|++.|+++++|| .+...++++. ...+++
T Consensus 104 ~i~S~gtDk~v~~wD~~tG~~~r---k~k~h~~~vNs~~p~rrg~~-lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqlt 178 (338)
T KOG0265|consen 104 HILSCGTDKTVRGWDAETGKRIR---KHKGHTSFVNSLDPSRRGPQ-LVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLT 178 (338)
T ss_pred EEEEecCCceEEEEecccceeee---hhccccceeeecCccccCCe-EEEecCCCceEEEEeecccchhhccc-cceeEE
Confidence 99999999999999999998776 67899999999996666766 789999999999999 6666777664 567889
Q ss_pred EEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCC----C
Q 001184 502 SVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE----G 577 (1130)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~----~ 577 (1130)
++.|. ..+..+++|+-|+.|++||++.......+.+|..+|+.+..+++|.++.+-+. +.++++||.+. .
T Consensus 179 Av~f~--d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsM----d~tvrvwd~rp~~p~~ 252 (338)
T KOG0265|consen 179 AVGFK--DTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSM----DNTVRVWDVRPFAPSQ 252 (338)
T ss_pred EEEec--ccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccc----cceEEEEEecccCCCC
Confidence 99885 44568999999999999999999999999999999999999999999999887 89999999875 3
Q ss_pred ceeEEEecccCc---eeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCC
Q 001184 578 ALKRTYIGFRKK---SAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQ 654 (1130)
Q Consensus 578 ~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg 654 (1130)
+++..+.++.-. ....++|+|++..+-+|+.|..+++||......+..+.+|.+ .|++++|+|...+|.+++.|.
T Consensus 253 R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~g--svn~~~Fhp~e~iils~~sdk 330 (338)
T KOG0265|consen 253 RCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYG--SVNEVDFHPTEPIILSCSSDK 330 (338)
T ss_pred ceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcce--eEEEeeecCCCcEEEEeccCc
Confidence 447777765321 244588999999999999999999999998888888877655 899999999999999999999
Q ss_pred cEEEE
Q 001184 655 GIKIL 659 (1130)
Q Consensus 655 ~i~iw 659 (1130)
+|.+=
T Consensus 331 ~i~lg 335 (338)
T KOG0265|consen 331 TIYLG 335 (338)
T ss_pred eeEee
Confidence 98863
No 40
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.9e-33 Score=285.70 Aligned_cols=280 Identities=20% Similarity=0.285 Sum_probs=252.3
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 425 (1130)
....|++++|+.+|. +||+|+.||.++||+...+. +. ++..|+++|.++.|+.+|.||+
T Consensus 234 ~nkdVT~L~Wn~~G~-~LatG~~~G~~riw~~~G~l-~~-------------------tl~~HkgPI~slKWnk~G~yil 292 (524)
T KOG0273|consen 234 SNKDVTSLDWNNDGT-LLATGSEDGEARIWNKDGNL-IS-------------------TLGQHKGPIFSLKWNKKGTYIL 292 (524)
T ss_pred ccCCcceEEecCCCC-eEEEeecCcEEEEEecCchh-hh-------------------hhhccCCceEEEEEcCCCCEEE
Confidence 456899999999998 79999999999999987443 33 5889999999999999999999
Q ss_pred EEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEe
Q 001184 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVC 504 (1130)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~ 504 (1130)
+++.|+++.+||..+|.... .+.-|..+-.++.|-.+.. +++++.|+.|+|+. ...+++.++.+|.++|.++.
T Consensus 293 S~~vD~ttilwd~~~g~~~q---~f~~~s~~~lDVdW~~~~~---F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk 366 (524)
T KOG0273|consen 293 SGGVDGTTILWDAHTGTVKQ---QFEFHSAPALDVDWQSNDE---FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALK 366 (524)
T ss_pred eccCCccEEEEeccCceEEE---eeeeccCCccceEEecCce---EeecCCCceEEEEEecCCCcceeeecccCceEEEE
Confidence 99999999999999987554 3566888778899988776 89999999999999 67788999999999999999
Q ss_pred ecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCC---------CeEEEeeecCCCCcEEEEeeCC
Q 001184 505 PHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADG---------SRLFSCGTSKEGDSHLVEWNES 575 (1130)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~---------~~l~~~~~~~~~~~~i~~wd~~ 575 (1130)
|.| .+.+|++++.|+++++|..........+..|...|..+.|+|+| ..+++++. +++|++||+.
T Consensus 367 ~n~--tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~----dstV~lwdv~ 440 (524)
T KOG0273|consen 367 WNP--TGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASF----DSTVKLWDVE 440 (524)
T ss_pred ECC--CCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeec----CCeEEEEEcc
Confidence 965 45899999999999999998888888999999999999999965 46788876 9999999999
Q ss_pred CCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCc
Q 001184 576 EGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQG 655 (1130)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~ 655 (1130)
.+.++..|..|.. +|.+++|+|+|+++++|+.||.|.+|+..+++.++.....+ .|..++|+.+|..|..+..|+.
T Consensus 441 ~gv~i~~f~kH~~-pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~---~Ifel~Wn~~G~kl~~~~sd~~ 516 (524)
T KOG0273|consen 441 SGVPIHTLMKHQE-PVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTG---GIFELCWNAAGDKLGACASDGS 516 (524)
T ss_pred CCceeEeeccCCC-ceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCC---eEEEEEEcCCCCEEEEEecCCC
Confidence 9999999998776 89999999999999999999999999999999999987655 5899999999999999999999
Q ss_pred EEEEEcC
Q 001184 656 IKILANA 662 (1130)
Q Consensus 656 i~iw~~~ 662 (1130)
+.+.|+.
T Consensus 517 vcvldlr 523 (524)
T KOG0273|consen 517 VCVLDLR 523 (524)
T ss_pred ceEEEec
Confidence 9998864
No 41
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.3e-32 Score=272.45 Aligned_cols=329 Identities=16% Similarity=0.194 Sum_probs=278.9
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iw 483 (1130)
.+..|...|.+++.+|+.+++|+|+.|....+|++.+|.... .+.+|+..|+++.|+.||. +|+||+-+|.|+||
T Consensus 59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~---eltgHKDSVt~~~Fshdgt--lLATGdmsG~v~v~ 133 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAG---ELTGHKDSVTCCSFSHDGT--LLATGDMSGKVLVF 133 (399)
T ss_pred ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCccee---EecCCCCceEEEEEccCce--EEEecCCCccEEEE
Confidence 577999999999999999999999999999999999998443 6899999999999999999 89999999999999
Q ss_pred e-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeec
Q 001184 484 D-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1130)
Q Consensus 484 d-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1130)
+ .+|.....+...-..+.-+.|||.. .+|+.|+.||.+.+|.+.+......+.+|..++++=.|.|+|++++++..
T Consensus 134 ~~stg~~~~~~~~e~~dieWl~WHp~a--~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~- 210 (399)
T KOG0296|consen 134 KVSTGGEQWKLDQEVEDIEWLKWHPRA--HILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYD- 210 (399)
T ss_pred EcccCceEEEeecccCceEEEEecccc--cEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEec-
Confidence 9 8888888887777888889998844 79999999999999999998888889999999999999999999999986
Q ss_pred CCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEecc---------CCCC
Q 001184 563 KEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAE---------GGLP 633 (1130)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~---------~~~~ 633 (1130)
+++|++|++.+++++..+.+.......++.++..+..++.|+.++.+++-+..+|+.+...... ....
T Consensus 211 ---dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~e 287 (399)
T KOG0296|consen 211 ---DGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDE 287 (399)
T ss_pred ---CceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhh
Confidence 9999999999999999888766667888999999999999999999999999888887766531 1111
Q ss_pred CcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCC
Q 001184 634 SLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPAR 713 (1130)
Q Consensus 634 ~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~ 713 (1130)
.|-++.++..-.+.|+|+-||+|.|||+.... ++
T Consensus 288 sve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~--~R-------------------------------------------- 321 (399)
T KOG0296|consen 288 SVESIPSSSKLPLAACGSVDGTIAIYDLAAST--LR-------------------------------------------- 321 (399)
T ss_pred hhhhcccccccchhhcccccceEEEEecccch--hh--------------------------------------------
Confidence 23334444455667777777777777764320 00
Q ss_pred CcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEe
Q 001184 714 PSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKL 793 (1130)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~i 793 (1130)
T Consensus 322 -------------------------------------------------------------------------------- 321 (399)
T KOG0296|consen 322 -------------------------------------------------------------------------------- 321 (399)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeC
Q 001184 794 WKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMS 872 (1130)
Q Consensus 794 w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~ 872 (1130)
..-.|...|..+.|-+ ..+|++++ +|.|+.||.++|+++.++.+
T Consensus 322 ----------------------------------~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~G 366 (399)
T KOG0296|consen 322 ----------------------------------HICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTG 366 (399)
T ss_pred ----------------------------------eeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEec
Confidence 0003677788888888 45566655 99999999999999999999
Q ss_pred CCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEee
Q 001184 873 PPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVR 905 (1130)
Q Consensus 873 ~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~ 905 (1130)
|...|.+++++| +.+++++++.|++.+||++.
T Consensus 367 H~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 367 HQMGILDFALSP-QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred CchheeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence 999999999999 89999999999999999864
No 42
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.2e-33 Score=278.06 Aligned_cols=293 Identities=18% Similarity=0.308 Sum_probs=260.2
Q ss_pred ccceeeec-cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEE
Q 001184 337 PRAVACTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRV 415 (1130)
Q Consensus 337 ~~~~~~~~-~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 415 (1130)
|-.+.+.+ +|.+.|.|+++.|-+. .+++|+.|++|+|||+.+|++.. ++.||-..|..+
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~Lkl-------------------tltGhi~~vr~v 199 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQLKL-------------------TLTGHIETVRGV 199 (460)
T ss_pred cceehhhhhhccceEEEEeeCCCce-eEEecCCCceeEEEEcccCeEEE-------------------eecchhheeeee
Confidence 34455566 4999999999999987 59999999999999999999876 588999999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEec
Q 001184 416 AWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFE 494 (1130)
Q Consensus 416 ~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~ 494 (1130)
++|+--.||.+++.|+.|+-||++..+.++ .+.||-..|.+++..|.-. .|+||+.|.++|||| .+...+..+.
T Consensus 200 avS~rHpYlFs~gedk~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~V~~l~ 274 (460)
T KOG0285|consen 200 AVSKRHPYLFSAGEDKQVKCWDLEYNKVIR---HYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRASVHVLS 274 (460)
T ss_pred eecccCceEEEecCCCeeEEEechhhhhHH---HhccccceeEEEeccccce--eEEecCCcceEEEeeecccceEEEec
Confidence 999999999999999999999999988776 5789999999999999888 899999999999999 8888999999
Q ss_pred CCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeC
Q 001184 495 GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNE 574 (1130)
Q Consensus 495 ~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1130)
||..+|.++.+.+.. ..+++|+.|++|++||+..++....+..|...+.+++..|....+++++ ...|.-|++
T Consensus 275 GH~~~V~~V~~~~~d--pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas-----~dnik~w~~ 347 (460)
T KOG0285|consen 275 GHTNPVASVMCQPTD--PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASAS-----PDNIKQWKL 347 (460)
T ss_pred CCCCcceeEEeecCC--CceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccC-----CccceeccC
Confidence 999999999986544 5799999999999999999999999999999999999999999999987 457999999
Q ss_pred CCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEec---cC---CCCCcceEEEcCCCCEEE
Q 001184 575 SEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEA---EG---GLPSLPRLRFNKEGNLLV 648 (1130)
Q Consensus 575 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---~~---~~~~i~~v~~s~~~~~l~ 648 (1130)
..|..+..+.+|.. .+.+++...|+ ++++|+++|.+.+||.++|-..+.... .+ ....|.+.+|...|..|+
T Consensus 348 p~g~f~~nlsgh~~-iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rli 425 (460)
T KOG0285|consen 348 PEGEFLQNLSGHNA-IINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLI 425 (460)
T ss_pred Cccchhhccccccc-eeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEE
Confidence 99999999888766 88899888775 899999999999999998865544321 11 223588999999999999
Q ss_pred EEeCCCcEEEEEcCC
Q 001184 649 VTTADQGIKILANAD 663 (1130)
Q Consensus 649 ~~~~dg~i~iw~~~~ 663 (1130)
+|..|.+|++|.-+.
T Consensus 426 t~eadKtIk~~keDe 440 (460)
T KOG0285|consen 426 TGEADKTIKMYKEDE 440 (460)
T ss_pred eccCCcceEEEeccc
Confidence 999999999998544
No 43
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6e-33 Score=257.67 Aligned_cols=288 Identities=16% Similarity=0.242 Sum_probs=249.2
Q ss_pred ccceeeecc-CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEE
Q 001184 337 PRAVACTMH-QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRV 415 (1130)
Q Consensus 337 ~~~~~~~~~-h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 415 (1130)
|...++++. |.+.|.++.|.-||+| ..+++.|.+|++|+...|.+++ ++.+|...|..+
T Consensus 6 ptkr~~~l~~~qgaV~avryN~dGnY-~ltcGsdrtvrLWNp~rg~lik-------------------tYsghG~EVlD~ 65 (307)
T KOG0316|consen 6 PTKRLSILDCAQGAVRAVRYNVDGNY-CLTCGSDRTVRLWNPLRGALIK-------------------TYSGHGHEVLDA 65 (307)
T ss_pred cchhceeecccccceEEEEEccCCCE-EEEcCCCceEEeecccccceee-------------------eecCCCceeeec
Confidence 343445554 8999999999999996 6777889999999999999987 588999999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe---cCCCeeeE
Q 001184 416 AWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD---LSGRKLFQ 492 (1130)
Q Consensus 416 ~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd---~~~~~~~~ 492 (1130)
+.+.|...+++|+.|+.|.+||+.+|+..+ .+.+|.+.|+.++|+.+.. .+++|+.|.++++|| .+-++++.
T Consensus 66 ~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~ePiQi 140 (307)
T KOG0316|consen 66 ALSSDNSKFASCGGDKAVQVWDVNTGKVDR---RFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEPIQI 140 (307)
T ss_pred cccccccccccCCCCceEEEEEcccCeeee---ecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCccch
Confidence 999999999999999999999999998776 6899999999999999998 999999999999999 45678889
Q ss_pred ecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEe
Q 001184 493 FEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEW 572 (1130)
Q Consensus 493 ~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w 572 (1130)
+......|.++.+.. ..|++|+.||+++.||++.++....+ -+++|+++.|++|++..++++. ++.+++.
T Consensus 141 ldea~D~V~Si~v~~----heIvaGS~DGtvRtydiR~G~l~sDy--~g~pit~vs~s~d~nc~La~~l----~stlrLl 210 (307)
T KOG0316|consen 141 LDEAKDGVSSIDVAE----HEIVAGSVDGTVRTYDIRKGTLSSDY--FGHPITSVSFSKDGNCSLASSL----DSTLRLL 210 (307)
T ss_pred hhhhcCceeEEEecc----cEEEeeccCCcEEEEEeecceeehhh--cCCcceeEEecCCCCEEEEeec----cceeeec
Confidence 988999999997743 67999999999999999987766544 4567999999999999999887 8999999
Q ss_pred eCCCCceeEEEecccCceeE-EEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEe
Q 001184 573 NESEGALKRTYIGFRKKSAG-VVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTT 651 (1130)
Q Consensus 573 d~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~ 651 (1130)
|-.+|++++.+.||.+.... .++++.....+++|++||.+++||+.....+..+..++.. .+.+++++|.-..++++.
T Consensus 211 Dk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v-~v~dl~~hp~~~~f~~A~ 289 (307)
T KOG0316|consen 211 DKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTV-IVTDLSCHPTMDDFITAT 289 (307)
T ss_pred ccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCce-eEEeeecccCccceeEec
Confidence 99999999999999875443 3667777789999999999999999999999888876652 478999999877777775
Q ss_pred CCCcEEEEEc
Q 001184 652 ADQGIKILAN 661 (1130)
Q Consensus 652 ~dg~i~iw~~ 661 (1130)
.. .+..|.-
T Consensus 290 ~~-~~~~~~~ 298 (307)
T KOG0316|consen 290 GH-GDLFWYQ 298 (307)
T ss_pred CC-ceeceee
Confidence 44 4555643
No 44
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3e-29 Score=268.27 Aligned_cols=549 Identities=14% Similarity=0.153 Sum_probs=384.3
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCC-CCeeEEEEecCCCceEEEEEcCCCcEEEEe-c
Q 001184 408 SSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHV-GGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-L 485 (1130)
Q Consensus 408 h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~-~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~ 485 (1130)
-...|+++|||.+.+.||.+-.||.|.+|++..+=... ..+.++. ..|.+++|++.++ |.+.+.+|.|.-|| .
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~--~vi~g~~drsIE~L~W~e~~R---LFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLE--PVIHGPEDRSIESLAWAEGGR---LFSSGLSGSITEWDLH 98 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceee--EEEecCCCCceeeEEEccCCe---EEeecCCceEEEEecc
Confidence 35689999999999999999999999999999865433 3455554 5799999996665 89999999999999 9
Q ss_pred CCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCccee--eecCCCccEEEEEEecCCCeEEEeeecC
Q 001184 486 SGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV--DYDAPGLWCTTMLYSADGSRLFSCGTSK 563 (1130)
Q Consensus 486 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1130)
+++.++.+....+.|++++.+|.. ..++.|+.||.+..++...+.... .+......+.++.|.|++..++.|+.
T Consensus 99 ~lk~~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~-- 174 (691)
T KOG2048|consen 99 TLKQKYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI-- 174 (691)
T ss_pred cCceeEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc--
Confidence 999999999999999999998765 689999999977777666554443 33445578999999999999999987
Q ss_pred CCCcEEEEeeCCCCceeEEEec----c---cCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcc
Q 001184 564 EGDSHLVEWNESEGALKRTYIG----F---RKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLP 636 (1130)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~----~---~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~ 636 (1130)
||.|++||...+..+..... . ....|.++.|-.+ ..|++|...|+|.+||...+.+++.+..+.. .|.
T Consensus 175 --Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~a--dVl 249 (691)
T KOG2048|consen 175 --DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDA--DVL 249 (691)
T ss_pred --CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhc--cee
Confidence 99999999999887662211 1 2224666777755 4799999999999999999999998887765 799
Q ss_pred eEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcc
Q 001184 637 RLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPST 716 (1130)
Q Consensus 637 ~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~ 716 (1130)
+++..+++..+++++.|+.+..+...++...
T Consensus 250 ~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~------------------------------------------------- 280 (691)
T KOG2048|consen 250 ALAVADNEDRVFSAGVDPKIIQYSLTTNKSE------------------------------------------------- 280 (691)
T ss_pred EEEEcCCCCeEEEccCCCceEEEEecCCccc-------------------------------------------------
Confidence 9999999999999999999988876655211
Q ss_pred cccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeec
Q 001184 717 ILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKW 796 (1130)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~ 796 (1130)
|-... ....|...+.++++.++ .+++++.|..+.+-..
T Consensus 281 ---------------------------wv~~~-------------~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s 318 (691)
T KOG2048|consen 281 ---------------------------WVINS-------------RRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSS 318 (691)
T ss_pred ---------------------------eeeec-------------cccCCcccceeeeeecc--eEEecceeeEEEEccc
Confidence 11100 00337788889998877 7889999988876432
Q ss_pred CCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEeCCeEEEEECCCce---------eE
Q 001184 797 NRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFK---------VM 867 (1130)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~---------~~ 867 (1130)
..... .+.. ....+ .... -+...+..++++.-....+.+|.+-+.- +.
T Consensus 319 ~~~~~--------------~~h~----~~~~~---p~~~--~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Ll 375 (691)
T KOG2048|consen 319 REFKN--------------MDHR----QKNLF---PASD--RVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLL 375 (691)
T ss_pred cccCc--------------hhhh----ccccc---cccc--eeecCccceEEEEeccccccceeccCcccccccChhhhe
Confidence 21000 0000 00000 1111 1333455555555557778888876541 12
Q ss_pred EEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEE-----EecCCCCeeEEEEccCCCeEEEEe-CCCcE
Q 001184 868 TTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTK-----LKGHQKHITGLAFSTNLNILVSSG-SDAQL 941 (1130)
Q Consensus 868 ~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~-----l~~h~~~V~~l~~s~dg~~L~s~s-~Dg~i 941 (1130)
+........|.+.+.|| +|+++|.+.-. .++||.++....+.. ...-.-....+.|+-|++.++.++ .+..+
T Consensus 376 kl~~k~~~nIs~~aiSP-dg~~Ia~st~~-~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~l 453 (691)
T KOG2048|consen 376 KLFTKEKENISCAAISP-DGNLIAISTVS-RTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSL 453 (691)
T ss_pred eeecCCccceeeeccCC-CCCEEEEeecc-ceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEeccccee
Confidence 22223455699999999 99999988643 588998875322222 222334577889999999888888 67788
Q ss_pred EEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEE-EcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECC-
Q 001184 942 IFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV-NHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSC- 1019 (1130)
Q Consensus 942 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~- 1019 (1130)
.+.++++.........+.. ..-..++.++.|++|.++++ +..+.|.+|++++++.-...... +..|++++|+|
T Consensus 454 e~~el~~ps~kel~~~~~~--~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rl---n~~vTa~~~~~~ 528 (691)
T KOG2048|consen 454 EEFELETPSFKELKSIQSQ--AKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRL---NIDVTAAAFSPF 528 (691)
T ss_pred EEEEecCcchhhhhccccc--cCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhcc---Ccceeeeecccc
Confidence 8888887544332222211 23368999999999999998 67999999999987765443233 57899999995
Q ss_pred CCCEEEEEeCCCcEEEEeCCCcccccccCCCcc-cccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 001184 1020 NSQLIYATFTDGSIGVFDADSLRLRCRIAPSAY-MSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPS 1093 (1130)
Q Consensus 1020 dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~ 1093 (1130)
+...|+.+..|+.++-||++..++- +...... .-...+..-...+..+.|+|.++..+++=+ .+-+++.|.+
T Consensus 529 ~~~~lvvats~nQv~efdi~~~~l~-~ws~~nt~nlpk~~~~l~~~~~gisfd~~n~s~~~~~~-a~w~~~id~~ 601 (691)
T KOG2048|consen 529 VRNRLVVATSNNQVFEFDIEARNLT-RWSKNNTRNLPKEPKTLIPGIPGISFDPKNSSRFIVYD-AHWSCLIDFS 601 (691)
T ss_pred ccCcEEEEecCCeEEEEecchhhhh-hhhhccccccccChhhcCCCCceEEeCCCCccEEEEEc-CcEEEEEecC
Confidence 5668888889999999999544321 1110000 000000111122344667776666555544 3445666654
No 45
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.6e-32 Score=270.11 Aligned_cols=245 Identities=18% Similarity=0.308 Sum_probs=225.9
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iw 483 (1130)
++.+|.+.|.|+++.|-..++++|+.|++|+|||+.+|+.. .++.||-..|..+++|+-.. ++++++.|+.|+.|
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lk---ltltGhi~~vr~vavS~rHp--YlFs~gedk~VKCw 220 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLK---LTLTGHIETVRGVAVSKRHP--YLFSAGEDKQVKCW 220 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEE---EeecchhheeeeeeecccCc--eEEEecCCCeeEEE
Confidence 68899999999999999999999999999999999999744 37899999999999999888 89999999999999
Q ss_pred e-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeec
Q 001184 484 D-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1130)
Q Consensus 484 d-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1130)
| ...+.++.+.||-..|.+++.+|.. ..|++|+.|.++++||+++...+..+.+|..+|.++.+.|-...+++++.
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~- 297 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSH- 297 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecC-
Confidence 9 8889999999999999999998876 58999999999999999999999999999999999999999999999987
Q ss_pred CCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcC
Q 001184 563 KEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK 642 (1130)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~ 642 (1130)
|++|++||+..|+...++..|.. .+.+++.+|....+++++.| .|+-|++..|..+..+..+.. .|++++...
T Consensus 298 ---D~tvrlWDl~agkt~~tlt~hkk-svral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~--iintl~~ns 370 (460)
T KOG0285|consen 298 ---DSTVRLWDLRAGKTMITLTHHKK-SVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNA--IINTLSVNS 370 (460)
T ss_pred ---CceEEEeeeccCceeEeeecccc-eeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccc--eeeeeeecc
Confidence 99999999999999999987666 89999999999999998876 499999999999888766554 689999988
Q ss_pred CCCEEEEEeCCCcEEEEEcCCC
Q 001184 643 EGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 643 ~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
|+ ++++|+++|.+.+||.+++
T Consensus 371 D~-v~~~G~dng~~~fwdwksg 391 (460)
T KOG0285|consen 371 DG-VLVSGGDNGSIMFWDWKSG 391 (460)
T ss_pred Cc-eEEEcCCceEEEEEecCcC
Confidence 77 6888999999999999888
No 46
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4.9e-32 Score=309.42 Aligned_cols=285 Identities=22% Similarity=0.371 Sum_probs=250.1
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCc--eeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRE--RLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNF 423 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 423 (1130)
|...|.|+.|||+|++ +++++.|+.+++|+..+++ ... .+.+|...|..++|+|||++
T Consensus 158 ~~~sv~~~~fs~~g~~-l~~~~~~~~i~~~~~~~~~~~~~~-------------------~l~~h~~~v~~~~fs~d~~~ 217 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRA-LAAASSDGLIRIWKLEGIKSNLLR-------------------ELSGHTRGVSDVAFSPDGSY 217 (456)
T ss_pred ccCceEEEEEcCCCCe-EEEccCCCcEEEeecccccchhhc-------------------cccccccceeeeEECCCCcE
Confidence 5889999999999995 9999999999999997666 332 35799999999999999999
Q ss_pred EEEEeCCCeEEEEEe-cCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEE
Q 001184 424 IGVAFTKHLIHLYTY-QGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVY 501 (1130)
Q Consensus 424 las~~~d~~i~vwd~-~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~ 501 (1130)
+++++.|++|+|||+ ..+.+++ ++.+|...|++++|+|+|+ ++++|+.|++|+||| .+++++..+.+|.+.|+
T Consensus 218 l~s~s~D~tiriwd~~~~~~~~~---~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is 292 (456)
T KOG0266|consen 218 LLSGSDDKTLRIWDLKDDGRNLK---TLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGECVRKLKGHSDGIS 292 (456)
T ss_pred EEEecCCceEEEeeccCCCeEEE---EecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCeEEEeeeccCCceE
Confidence 999999999999999 4434444 7889999999999999997 899999999999999 77899999999999999
Q ss_pred EEeecccCCccEEEEEecCCcEEEEEccCCcc--eeeecCCCc--cEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCC
Q 001184 502 SVCPHQKENIHFIFSTAVDGKIKAWLYDNVGS--RVDYDAPGL--WCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG 577 (1130)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~--~~~~~~~~~--~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1130)
+++|. +++.+|++++.|+.|++||+.++.. ...+..+.. +++++.|+|++.++++++. ++.+.+||+..+
T Consensus 293 ~~~f~--~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~----d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 293 GLAFS--PDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL----DRTLKLWDLRSG 366 (456)
T ss_pred EEEEC--CCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC----CCeEEEEEccCC
Confidence 99995 5668999999999999999999883 344444433 5999999999999999986 889999999999
Q ss_pred ceeEEEecccCc--eeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEe--CC
Q 001184 578 ALKRTYIGFRKK--SAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTT--AD 653 (1130)
Q Consensus 578 ~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~--~d 653 (1130)
.....+.+|... .+.....++.+.++++|+.|+.|++||..++..+..+..+. ...+..+.++|..+++++++ .|
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~-~~~~~~~~~~~~~~~~~s~s~~~d 445 (456)
T KOG0266|consen 367 KSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS-KAAVSDLSSHPTENLIASSSFEGD 445 (456)
T ss_pred cceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC-CCceeccccCCCcCeeeecCcCCC
Confidence 999999998875 34445567889999999999999999999999988888874 45789999999999999998 78
Q ss_pred CcEEEEEcC
Q 001184 654 QGIKILANA 662 (1130)
Q Consensus 654 g~i~iw~~~ 662 (1130)
+.+++|...
T Consensus 446 ~~~~~w~~~ 454 (456)
T KOG0266|consen 446 GLIRLWKYD 454 (456)
T ss_pred ceEEEecCC
Confidence 999999753
No 47
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2e-32 Score=270.76 Aligned_cols=300 Identities=15% Similarity=0.317 Sum_probs=267.4
Q ss_pred eeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEE
Q 001184 449 EIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWL 527 (1130)
Q Consensus 449 ~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd 527 (1130)
.+.+|..+|+.+-|.|+-. +++++++|.+|++|| .+|++...++||...|..+.|+ ..|.++++++.|-.+++||
T Consensus 103 ~l~g~r~~vt~v~~hp~~~--~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~--a~Gk~l~tcSsDl~~~LWd 178 (406)
T KOG0295|consen 103 KLAGHRSSVTRVIFHPSEA--LVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFD--ASGKYLATCSSDLSAKLWD 178 (406)
T ss_pred hhhccccceeeeeeccCce--EEEEecCCceEEEEEccchhhhhhhhccccceeEEEEe--cCccEEEecCCccchhhee
Confidence 4678999999999999988 899999999999999 9999999999999999999995 4558999999999999999
Q ss_pred ccC-CcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEE
Q 001184 528 YDN-VGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAA 606 (1130)
Q Consensus 528 ~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 606 (1130)
.+. .+++....+|.+.|.+++|-|.|.++++++. |.+|..|+..++-++.++.+|.. .+..+..+.||..++++
T Consensus 179 ~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~sr----D~tik~We~~tg~cv~t~~~h~e-wvr~v~v~~DGti~As~ 253 (406)
T KOG0295|consen 179 FDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSR----DNTIKAWECDTGYCVKTFPGHSE-WVRMVRVNQDGTIIASC 253 (406)
T ss_pred HHHHHHHHHHhcCcccceeeEEEEecCCeeeeccc----ccceeEEecccceeEEeccCchH-hEEEEEecCCeeEEEec
Confidence 987 5566677889999999999999999999997 89999999999999999999887 89999999999999999
Q ss_pred eCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhccccccccccccccc
Q 001184 607 GEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMK 686 (1130)
Q Consensus 607 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (1130)
+.|.++++|-+.++++...+..|.+ +|.+++|.|...+ .. |.+.
T Consensus 254 s~dqtl~vW~~~t~~~k~~lR~hEh--~vEci~wap~~~~--~~-------i~~a------------------------- 297 (406)
T KOG0295|consen 254 SNDQTLRVWVVATKQCKAELREHEH--PVECIAWAPESSY--PS-------ISEA------------------------- 297 (406)
T ss_pred CCCceEEEEEeccchhhhhhhcccc--ceEEEEecccccC--cc-------hhhc-------------------------
Confidence 9999999999999988888888777 7888888775320 00 0000
Q ss_pred ccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCC
Q 001184 687 VPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDS 766 (1130)
Q Consensus 687 ~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 766 (1130)
T Consensus 298 -------------------------------------------------------------------------------- 297 (406)
T KOG0295|consen 298 -------------------------------------------------------------------------------- 297 (406)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCC
Q 001184 767 ASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDS 846 (1130)
Q Consensus 767 ~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~ 846 (1130)
+ +... .+.
T Consensus 298 -----------------t----------------------------------------------~~~~---------~~~ 305 (406)
T KOG0295|consen 298 -----------------T----------------------------------------------GSTN---------GGQ 305 (406)
T ss_pred -----------------c----------------------------------------------CCCC---------Ccc
Confidence 0 0000 456
Q ss_pred EEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEE
Q 001184 847 YVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAF 925 (1130)
Q Consensus 847 ~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~ 925 (1130)
++.+++ |++|++||+.++.++.++.+|...|..++|+| +|++|+++.+|+++++||++++++..++..|..-|+++.|
T Consensus 306 ~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p-~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDf 384 (406)
T KOG0295|consen 306 VLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSP-GGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDF 384 (406)
T ss_pred EEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcC-CCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEec
Confidence 788888 99999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred ccCCCeEEEEeCCCcEEEEEC
Q 001184 926 STNLNILVSSGSDAQLIFWNT 946 (1130)
Q Consensus 926 s~dg~~L~s~s~Dg~i~vwd~ 946 (1130)
..+..++++|+-|.++++|.-
T Consensus 385 h~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 385 HKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred CCCCceEEeccccceeeeeec
Confidence 999999999999999999963
No 48
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=8.5e-32 Score=259.80 Aligned_cols=250 Identities=18% Similarity=0.321 Sum_probs=218.2
Q ss_pred eeecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEE
Q 001184 403 AIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRV 482 (1130)
Q Consensus 403 ~~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~i 482 (1130)
..+.+|++.|..+.|+|+|.+||+|+.|..|.+|++.... .....+++|.++|..+.|.+|+. .++++|.|++|+.
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--eN~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--ENFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTVRG 116 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--cceeeeccccceeEeeeeccCCC--EEEEecCCceEEE
Confidence 3578999999999999999999999999999999976543 23346789999999999999999 8999999999999
Q ss_pred Ee-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeee
Q 001184 483 WD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGT 561 (1130)
Q Consensus 483 wd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 561 (1130)
|| .+|++++.+++|...|++++.. .-+..++.+++.|+++++||++......++. ...+++++.|..++..+.+++-
T Consensus 117 wD~~tG~~~rk~k~h~~~vNs~~p~-rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggI 194 (338)
T KOG0265|consen 117 WDAETGKRIRKHKGHTSFVNSLDPS-RRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGI 194 (338)
T ss_pred EecccceeeehhccccceeeecCcc-ccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccc
Confidence 99 9999999999999999999843 2334678889999999999999887776654 3456999999999999999997
Q ss_pred cCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC----ceeEEEeccCCCC--Cc
Q 001184 562 SKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNV----NMLTSTEAEGGLP--SL 635 (1130)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~~--~i 635 (1130)
|+.|++||++.......+.||.+ .|+.+..+++|.++.+-+.|.++++||++.. +++..+..+.+.- ..
T Consensus 195 ----dn~ikvWd~r~~d~~~~lsGh~D-tIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknl 269 (338)
T KOG0265|consen 195 ----DNDIKVWDLRKNDGLYTLSGHAD-TITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNL 269 (338)
T ss_pred ----cCceeeeccccCcceEEeecccC-ceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhc
Confidence 88999999999999999999888 8999999999999999999999999998753 4477776665432 34
Q ss_pred ceEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001184 636 PRLRFNKEGNLLVVTTADQGIKILANAD 663 (1130)
Q Consensus 636 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 663 (1130)
..++|+|++..+..|+.|..+++||...
T Consensus 270 L~cswsp~~~~i~ags~dr~vyvwd~~~ 297 (338)
T KOG0265|consen 270 LKCSWSPNGTKITAGSADRFVYVWDTTS 297 (338)
T ss_pred ceeeccCCCCccccccccceEEEeeccc
Confidence 5789999999999999999999999654
No 49
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=100.00 E-value=8.7e-31 Score=275.39 Aligned_cols=644 Identities=16% Similarity=0.222 Sum_probs=355.8
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEE
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 424 (1130)
.|++.|+.+.|||-...|||+|+.|..|+||.+..|-.-.- .-+...+.+..-.|-|+.|+|...-|
T Consensus 77 ~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~L-------------Sape~~~g~~~~~vE~l~fHpTaDgi 143 (1012)
T KOG1445|consen 77 AHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKL-------------SAPEIDVGGGNVIVECLRFHPTADGI 143 (1012)
T ss_pred cccceeeccCccccchhhhhcccCCCeeEEEecCCCccccc-------------CCcceeecCCceEEEEeecccCcCce
Confidence 49999999999998888999999999999999974422110 00112355556678899999976656
Q ss_pred EEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe--cCCCeeeEecCCCcCE-E
Q 001184 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQFEGHEAPV-Y 501 (1130)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd--~~~~~~~~~~~h~~~v-~ 501 (1130)
...+..|+++|||+.+++.+. .+.+|...|.+..|+.||+ ++++++.|+.|+||| ..++.++...+|.+.- .
T Consensus 144 l~s~a~g~v~i~D~stqk~~~---el~~h~d~vQSa~WseDG~--llatscKdkqirifDPRa~~~piQ~te~H~~~rds 218 (1012)
T KOG1445|consen 144 LASGAHGSVYITDISTQKTAV---ELSGHTDKVQSADWSEDGK--LLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDS 218 (1012)
T ss_pred EEeccCceEEEEEcccCceee---cccCCchhhhccccccCCc--eEeeecCCcceEEeCCccCCCccccccccccchhh
Confidence 666678999999999987554 7899999999999999999 899999999999999 7889999999997642 2
Q ss_pred EEeecccCCccEEEEEecC----CcEEEEEccCCccee---eecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeC
Q 001184 502 SVCPHQKENIHFIFSTAVD----GKIKAWLYDNVGSRV---DYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNE 574 (1130)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~d----g~i~vwd~~~~~~~~---~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1130)
.+.| .++-..|++.+.+ ..|++||.+...... ++.... .|.---|.||.++|+.++. ++.+|+.+.+
T Consensus 219 Rv~w--~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~st-GvLiPl~DpDt~llfLaGK---G~~~l~~lE~ 292 (1012)
T KOG1445|consen 219 RVLW--AGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSST-GVLIPLYDPDTRLLFLAGK---GTNKLFMLEM 292 (1012)
T ss_pred eeee--ccchhhhhhcccchhhheeeeeeeccccCCcceeEEeeccc-ceEeeeecCCCceEEEecC---CcceEEEEEe
Confidence 3344 3443456666554 568999987654432 333222 3555678999999998874 5778888877
Q ss_pred CCCcee--EEEecccCceeEEEEEcCCCCEEEEEeC-CCcEE--------------------------------------
Q 001184 575 SEGALK--RTYIGFRKKSAGVVQFDTTRNRILAAGE-DNQIK-------------------------------------- 613 (1130)
Q Consensus 575 ~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~-------------------------------------- 613 (1130)
...+.. ..+...-.......++-|....-+..++ +..+.
T Consensus 293 ~d~qPyLs~v~~~tle~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~~~a 372 (1012)
T KOG1445|consen 293 QDRQPYLSHVFELTLEEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEPGCTA 372 (1012)
T ss_pred cCCCcchhhhhhhcchhhhccceecchhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhhCccccCCccCcCc
Confidence 654331 1111000000011111111110000000 00000
Q ss_pred -EEeCCCCceeEEEec------cCCC----------------CCcceEEEcCCCCEEEEEeCCCcEEE---EEcCCCchh
Q 001184 614 -FWDMDNVNMLTSTEA------EGGL----------------PSLPRLRFNKEGNLLVVTTADQGIKI---LANADGLRA 667 (1130)
Q Consensus 614 -vwd~~~~~~~~~~~~------~~~~----------------~~i~~v~~s~~~~~l~~~~~dg~i~i---w~~~~~~~~ 667 (1130)
-|=-.+.+.+..... |+.. ..+......|...--.....++.--+ -.+..+ +.
T Consensus 373 geWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~~~-~e 451 (1012)
T KOG1445|consen 373 GEWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVPKK-EE 451 (1012)
T ss_pred cceecCccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccCCCcCcc-hh
Confidence 010001111111100 0000 00000000010000000000100000 000000 01
Q ss_pred hhhhcccccccccc------cccccccccceeecccccccccccc---------C----------CCCC----CCCcccc
Q 001184 668 LRAIETRAYETSRA------STEMKVPGSAVVTTITPVLSKAERV---------D----------RSSP----ARPSTIL 718 (1130)
Q Consensus 668 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~sp~~~~~~~~---------~----------~~~~----~~~~~~~ 718 (1130)
.+.+.-...+.... ....+...+.-...++|..-...+. . +..| +..+..+
T Consensus 452 ~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~~~g~~~ 531 (1012)
T KOG1445|consen 452 VRELDYRPYEKENGVHTPNADADSTQGNSSPISTISPEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPVNFGKPI 531 (1012)
T ss_pred hhhhcccccccccCccCCCcccccccCCCCCccccCCCcccccCCCCcccccccccccccCccccccCCCCCCcccCCCc
Confidence 11110000000000 0000000000000011110000000 0 0111 1111111
Q ss_pred cCCCccccCCCCcccccccCCCccceeeccccCCccee-EEEecC-CCCCccceEEEEEeccCCeEE--EeeeCCeEEee
Q 001184 719 NGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCR-VVAMPE-STDSASKVARLLYTNSGIGIL--ALWSNGVQKLW 794 (1130)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~-~~~~~~-~~~~~~~i~~l~~s~~g~~l~--~~~~dg~i~iw 794 (1130)
...........-.-.+ ..-|.+.-|.-.......+.. ...+.+ .....++...++ .+..+++ ..+..|.|-||
T Consensus 532 sat~~v~~s~s~r~~s-~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsnGfc--an~~rvAVPL~g~gG~iai~ 608 (1012)
T KOG1445|consen 532 SATNRVPLSQSVRPKS-CVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPGESNGFC--ANNKRVAVPLAGSGGVIAIY 608 (1012)
T ss_pred cccccccccccccccc-eeeccchheeeccCccccchhhhhhhhcccccCCCccCcee--eccceEEEEecCCCceEEEE
Confidence 0000000000000000 000111111111100000000 000000 000112222233 3333333 45668999999
Q ss_pred ecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEec-CCCEEEEEe-CCeEEEEECCCc-------e
Q 001184 795 KWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSK-NDSYVMSAG-GGKVSLFNMMNF-------K 865 (1130)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~-dg~~la~~~-dg~i~iwd~~~~-------~ 865 (1130)
+++.....|++.+..- -....|+.++|.| |...||+++ ||.|++|.+..+ +
T Consensus 609 el~~PGrLPDgv~p~l--------------------~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~t 668 (1012)
T KOG1445|consen 609 ELNEPGRLPDGVMPGL--------------------FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMT 668 (1012)
T ss_pred EcCCCCCCCccccccc--------------------ccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCC
Confidence 9988777766643221 2466789999998 667888887 799999998754 3
Q ss_pred eEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEE
Q 001184 866 VMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWN 945 (1130)
Q Consensus 866 ~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd 945 (1130)
....+..|...|+++.|+|-...+|++++.|-+|++||+.+++....|.+|++.|.+++|||||+.+++.+.||+|++|+
T Consensus 669 Pe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~ 748 (1012)
T KOG1445|consen 669 PEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYE 748 (1012)
T ss_pred cceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeC
Confidence 45667889999999999997778999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEE-E----cCCcEEEEECCCce--eeeeeecCCCCCCCeEEEEEC
Q 001184 946 TDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV-N----HETQLAIYDGSKME--CIRQWVPQDVLSSPISSAAYS 1018 (1130)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~----~d~~i~v~d~~~~~--~~~~~~~~~~~~~~v~~v~~s 1018 (1130)
..+.+.. +....+........|.|.-||+++++ + +.+.|.+||..+.. .+....... ...+.--.+.
T Consensus 749 Prs~e~p----v~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDv--aps~LvP~YD 822 (1012)
T KOG1445|consen 749 PRSREQP----VYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDV--APSPLVPHYD 822 (1012)
T ss_pred CCCCCCc----cccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecc--cCcccccccc
Confidence 8885542 22222333356678999999999987 3 46789999987543 332222111 1122233455
Q ss_pred CCCC-EEEEEeCCCcEEEEeCCCcc
Q 001184 1019 CNSQ-LIYATFTDGSIGVFDADSLR 1042 (1130)
Q Consensus 1019 ~dg~-~l~t~~~Dg~i~vwd~~~~~ 1042 (1130)
+|.. ++++|-.|..|++|.+..-.
T Consensus 823 ~Ds~~lfltGKGD~~v~~yEv~~es 847 (1012)
T KOG1445|consen 823 YDSNVLFLTGKGDRFVNMYEVIYES 847 (1012)
T ss_pred CCCceEEEecCCCceEEEEEecCCC
Confidence 6766 55566689999999876443
No 50
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=4.4e-33 Score=272.45 Aligned_cols=274 Identities=23% Similarity=0.314 Sum_probs=233.6
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 425 (1130)
....|+|+++..+ .+++|..|.+|+|||.++.++.+ ++.||++.|.|+.|. .+.|+
T Consensus 196 ~skgVYClQYDD~---kiVSGlrDnTikiWD~n~~~c~~-------------------~L~GHtGSVLCLqyd--~rvii 251 (499)
T KOG0281|consen 196 NSKGVYCLQYDDE---KIVSGLRDNTIKIWDKNSLECLK-------------------ILTGHTGSVLCLQYD--ERVIV 251 (499)
T ss_pred cCCceEEEEecch---hhhcccccCceEEeccccHHHHH-------------------hhhcCCCcEEeeecc--ceEEE
Confidence 4578999999653 38999999999999999888776 588999999999995 56999
Q ss_pred EEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCC---eeeEecCCCcCEE
Q 001184 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGR---KLFQFEGHEAPVY 501 (1130)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~---~~~~~~~h~~~v~ 501 (1130)
+|+.|.+|+|||+++|+++. ++-+|...|..+.|+.. +++|++.|.++++|| .+.. +.+.+.||...|+
T Consensus 252 sGSSDsTvrvWDv~tge~l~---tlihHceaVLhlrf~ng----~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN 324 (499)
T KOG0281|consen 252 SGSSDSTVRVWDVNTGEPLN---TLIHHCEAVLHLRFSNG----YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 324 (499)
T ss_pred ecCCCceEEEEeccCCchhh---HHhhhcceeEEEEEeCC----EEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee
Confidence 99999999999999999876 67889999999999853 799999999999999 3332 3356789999999
Q ss_pred EEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeE
Q 001184 502 SVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKR 581 (1130)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 581 (1130)
.+.|. .+++++++.|.+|++|++.+.+.+.++.+|...|-|+.+ .|+++++|+. |.+|++||+..|.+++
T Consensus 325 vVdfd----~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSS----DntIRlwdi~~G~cLR 394 (499)
T KOG0281|consen 325 VVDFD----DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACLR 394 (499)
T ss_pred eeccc----cceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCC----CceEEEEeccccHHHH
Confidence 99873 269999999999999999999999999999998888776 4788888876 9999999999999999
Q ss_pred EEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEE-------EeccCCCCCcceEEEcCCCCEEEEEeCCC
Q 001184 582 TYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTS-------TEAEGGLPSLPRLRFNKEGNLLVVTTADQ 654 (1130)
Q Consensus 582 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-------~~~~~~~~~i~~v~~s~~~~~l~~~~~dg 654 (1130)
.+.||.. -|.++.| +.+.+++|+.||+|+|||+..+..... .....+.+.|..+.|. ...+++++.|.
T Consensus 395 vLeGHEe-LvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHdd 469 (499)
T KOG0281|consen 395 VLEGHEE-LVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDD 469 (499)
T ss_pred HHhchHH-hhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCC
Confidence 9999877 8999999 568899999999999999987643311 1122344478888885 56789999999
Q ss_pred cEEEEEcCCCc
Q 001184 655 GIKILANADGL 665 (1130)
Q Consensus 655 ~i~iw~~~~~~ 665 (1130)
+|.|||+.++.
T Consensus 470 tILiWdFl~~~ 480 (499)
T KOG0281|consen 470 TILIWDFLNGP 480 (499)
T ss_pred eEEEEEcCCCC
Confidence 99999998773
No 51
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-31 Score=268.27 Aligned_cols=291 Identities=18% Similarity=0.322 Sum_probs=232.0
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iw 483 (1130)
++..|...|..+.||++|+|||+++.|.+..+|++.....++..+++.+|..+|..+.||||++ ++++|+.|..+.+|
T Consensus 219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr--yLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR--YLLACGFDEVLSLW 296 (519)
T ss_pred hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC--eEEecCchHheeec
Confidence 6889999999999999999999999999999999987777777889999999999999999999 89999999999999
Q ss_pred e-cCCCeeeEec-CCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeee
Q 001184 484 D-LSGRKLFQFE-GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGT 561 (1130)
Q Consensus 484 d-~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 561 (1130)
| .+|.+...+. +|...+. +++|.|||..+++|+.
T Consensus 297 Dv~tgd~~~~y~~~~~~S~~--------------------------------------------sc~W~pDg~~~V~Gs~ 332 (519)
T KOG0293|consen 297 DVDTGDLRHLYPSGLGFSVS--------------------------------------------SCAWCPDGFRFVTGSP 332 (519)
T ss_pred cCCcchhhhhcccCcCCCcc--------------------------------------------eeEEccCCceeEecCC
Confidence 9 7777766554 2233444 4455555555555543
Q ss_pred cCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEc
Q 001184 562 SKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFN 641 (1130)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s 641 (1130)
|+.+..||.. |.......+.....+..+++++||+++++.+.|..|++++.++......+..+. +|+++..|
T Consensus 333 ----dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~---~its~~iS 404 (519)
T KOG0293|consen 333 ----DRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQ---PITSFSIS 404 (519)
T ss_pred ----CCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccC---ceeEEEEc
Confidence 4555555543 333444455455578899999999999999999999999998876665554433 69999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCC
Q 001184 642 KEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGA 721 (1130)
Q Consensus 642 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~ 721 (1130)
.+++++.+.-.+..+++||++.. ...+.+.||....
T Consensus 405 ~d~k~~LvnL~~qei~LWDl~e~-~lv~kY~Ghkq~~------------------------------------------- 440 (519)
T KOG0293|consen 405 KDGKLALVNLQDQEIHLWDLEEN-KLVRKYFGHKQGH------------------------------------------- 440 (519)
T ss_pred CCCcEEEEEcccCeeEEeecchh-hHHHHhhcccccc-------------------------------------------
Confidence 99999999999999999999855 5555554432210
Q ss_pred CccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCC
Q 001184 722 DSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQ 801 (1130)
Q Consensus 722 ~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~ 801 (1130)
++
T Consensus 441 -----------------------------------------------------------fi------------------- 442 (519)
T KOG0293|consen 441 -----------------------------------------------------------FI------------------- 442 (519)
T ss_pred -----------------------------------------------------------eE-------------------
Confidence 00
Q ss_pred CCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEe-cCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEE
Q 001184 802 NPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALS-KNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTF 879 (1130)
Q Consensus 802 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s-~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~ 879 (1130)
| .-||- .+.+++++|+ |++|+||+..+++++..+.+|...|++
T Consensus 443 ----------------------------------I-rSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNc 487 (519)
T KOG0293|consen 443 ----------------------------------I-RSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNC 487 (519)
T ss_pred ----------------------------------E-EeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeE
Confidence 0 11121 2457899999 899999999999999999999999999
Q ss_pred EEEeCCCCcEEEEEeCCCcEEEEEee
Q 001184 880 LAFHPQDNNIIAIGMEDSTIQIYNVR 905 (1130)
Q Consensus 880 l~~sp~~~~~lasg~~dg~v~iwd~~ 905 (1130)
++|+|.+..++|+|++||+|+||-..
T Consensus 488 VswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 488 VSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred EecCCCCHHHhhccCCCCeEEEecCC
Confidence 99999999999999999999999765
No 52
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.9e-30 Score=244.06 Aligned_cols=242 Identities=16% Similarity=0.289 Sum_probs=206.5
Q ss_pred eecCCCccEEEEEEcCC-CCEEEEEeCCCeEEEEEecCCccceeeeee-ecCCCCeeEEEEecCCCceEEEEEcCCCcEE
Q 001184 404 IVKDSSISVSRVAWSPD-GNFIGVAFTKHLIHLYTYQGSNDLCQSLEI-DAHVGGVNDLAFSYPNKQLCIVTCGDDKLIR 481 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spd-g~~las~~~d~~i~vwd~~~~~~~~~~~~~-~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~ 481 (1130)
.+.+|.+.|..++|+|- |..||+|+.|+.|++|+..++........+ .+|+..|++++|+|.|+ +|+++|.|.++.
T Consensus 9 ~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~--~La~aSFD~t~~ 86 (312)
T KOG0645|consen 9 KLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGR--YLASASFDATVV 86 (312)
T ss_pred eecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCc--EEEEeeccceEE
Confidence 57899999999999998 999999999999999999865444333233 57999999999999999 899999999999
Q ss_pred EEe-c--CCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCc---ceeeecCCCccEEEEEEecCCCe
Q 001184 482 VWD-L--SGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVG---SRVDYDAPGLWCTTMLYSADGSR 555 (1130)
Q Consensus 482 iwd-~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~s~~~~~ 555 (1130)
||. . +-+++.++.||...|.+++|+ .+|.+|++++.|+.|-+|.++... +...+..|...|..+.|.|...+
T Consensus 87 Iw~k~~~efecv~~lEGHEnEVK~Vaws--~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dl 164 (312)
T KOG0645|consen 87 IWKKEDGEFECVATLEGHENEVKCVAWS--ASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDL 164 (312)
T ss_pred EeecCCCceeEEeeeeccccceeEEEEc--CCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcce
Confidence 999 4 346789999999999999996 456899999999999999987543 44578889999999999999999
Q ss_pred EEEeeecCCCCcEEEEeeCC---CCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCC
Q 001184 556 LFSCGTSKEGDSHLVEWNES---EGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGL 632 (1130)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 632 (1130)
|++++. |.+|++|+-. .-.+.+++.+|+. .+.+++|++.|.+|++++.|++++||...+. +. ..+.
T Consensus 165 L~S~SY----DnTIk~~~~~~dddW~c~~tl~g~~~-TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-----~~-~~~s 233 (312)
T KOG0645|consen 165 LFSCSY----DNTIKVYRDEDDDDWECVQTLDGHEN-TVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-----LS-GMHS 233 (312)
T ss_pred eEEecc----CCeEEEEeecCCCCeeEEEEecCccc-eEEEEEecCCCceEEEecCCcceEeeeeccC-----cc-hhcc
Confidence 999998 9999999876 3457889999877 8999999999999999999999999997632 11 1233
Q ss_pred CCcceEEEcCCCCEEEEEeCCCcEEEEEcC
Q 001184 633 PSLPRLRFNKEGNLLVVTTADQGIKILANA 662 (1130)
Q Consensus 633 ~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~ 662 (1130)
..++.++|. ...|++++.|+.|+++.-.
T Consensus 234 r~~Y~v~W~--~~~IaS~ggD~~i~lf~~s 261 (312)
T KOG0645|consen 234 RALYDVPWD--NGVIASGGGDDAIRLFKES 261 (312)
T ss_pred cceEeeeec--ccceEeccCCCEEEEEEec
Confidence 478889998 4479999999999999754
No 53
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.98 E-value=1.8e-31 Score=291.41 Aligned_cols=245 Identities=19% Similarity=0.362 Sum_probs=224.8
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCc--------cc--------------------eeeeeeecCCCCeeEE
Q 001184 409 SISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSN--------DL--------------------CQSLEIDAHVGGVNDL 460 (1130)
Q Consensus 409 ~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~--------~~--------------------~~~~~~~~h~~~V~~i 460 (1130)
...++|..||+|++.||.|..|..|++|.+...+ .+ ....++.||.++|..+
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~ 457 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC 457 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence 4579999999999999999999999999987321 00 1123578999999999
Q ss_pred EEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecC
Q 001184 461 AFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA 539 (1130)
Q Consensus 461 ~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~ 539 (1130)
.|+|+.+ +|++||+|++||+|. .+..++..++||..||+.+.|+| .|-+++|+|.|++-++|..+...+...+.+
T Consensus 458 sFsPd~r--fLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P--~GyYFatas~D~tArLWs~d~~~PlRifag 533 (707)
T KOG0263|consen 458 SFSPDRR--FLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP--RGYYFATASHDQTARLWSTDHNKPLRIFAG 533 (707)
T ss_pred eeccccc--ceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC--CceEEEecCCCceeeeeecccCCchhhhcc
Confidence 9999999 899999999999999 88899999999999999999975 568999999999999999999999999999
Q ss_pred CCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001184 540 PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN 619 (1130)
Q Consensus 540 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 619 (1130)
|-..|.|+.|.|+..|+++|+. |.++++||..+|..++.|.||.. +|.+++|+|+|++|++|++||.|.+||+.+
T Consensus 534 hlsDV~cv~FHPNs~Y~aTGSs----D~tVRlWDv~~G~~VRiF~GH~~-~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~ 608 (707)
T KOG0263|consen 534 HLSDVDCVSFHPNSNYVATGSS----DRTVRLWDVSTGNSVRIFTGHKG-PVTALAFSPCGRYLASGDEDGLIKIWDLAN 608 (707)
T ss_pred cccccceEEECCcccccccCCC----CceEEEEEcCCCcEEEEecCCCC-ceEEEEEcCCCceEeecccCCcEEEEEcCC
Confidence 9999999999999999999986 99999999999999999999877 999999999999999999999999999999
Q ss_pred CceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 620 VNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 620 ~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
++++..+..|. +.|.++.|+.+|..||+|+.|++|++||+...
T Consensus 609 ~~~v~~l~~Ht--~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 609 GSLVKQLKGHT--GTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred Ccchhhhhccc--CceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 99999998874 48999999999999999999999999998654
No 54
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.98 E-value=1.1e-27 Score=256.29 Aligned_cols=499 Identities=14% Similarity=0.164 Sum_probs=352.8
Q ss_pred CCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCe-eeEecCC-CcCEEEEeecccCCccEEEEEecCCcEEEEEccC
Q 001184 454 VGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRK-LFQFEGH-EAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDN 530 (1130)
Q Consensus 454 ~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~-~~~~~~h-~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~ 530 (1130)
...|.++||+.+.+ .||.+-.||.|-||+ ..+-. ...+.++ ...|.+++|. ++..|++.+.+|.|.-||+.+
T Consensus 25 Ps~I~slA~s~kS~--~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~---e~~RLFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSN--QLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA---EGGRLFSSGLSGSITEWDLHT 99 (691)
T ss_pred ccceEEEEEeccCC--ceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc---cCCeEEeecCCceEEEEeccc
Confidence 45699999999999 689999999999999 44433 3345554 4679999997 446899999999999999999
Q ss_pred CcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEe-cccCceeEEEEEcCCCCEEEEEeCC
Q 001184 531 VGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYI-GFRKKSAGVVQFDTTRNRILAAGED 609 (1130)
Q Consensus 531 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d 609 (1130)
.+....+...+..|.+++.+|.+..++.++. +|.++.++...+.....-. ....+.+.++.|+|++..+++|+.|
T Consensus 100 lk~~~~~d~~gg~IWsiai~p~~~~l~Igcd----dGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~D 175 (691)
T KOG2048|consen 100 LKQKYNIDSNGGAIWSIAINPENTILAIGCD----DGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSID 175 (691)
T ss_pred CceeEEecCCCcceeEEEeCCccceEEeecC----CceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccC
Confidence 9999999999999999999999999999875 7888888887776654322 2233589999999999999999999
Q ss_pred CcEEEEeCCCCceeEEEec-----cC-CCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccc
Q 001184 610 NQIKFWDMDNVNMLTSTEA-----EG-GLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRAST 683 (1130)
Q Consensus 610 g~i~vwd~~~~~~~~~~~~-----~~-~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 683 (1130)
|.|++||...+..+..... .. ...-|.++.|-.++ .+++|...|+|.+||...+ .+.+..
T Consensus 176 g~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~g-TLiqS~------------ 241 (691)
T KOG2048|consen 176 GVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFG-TLIQSH------------ 241 (691)
T ss_pred ceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCc-chhhhh------------
Confidence 9999999999987773222 11 22245667776555 6899999999999998776 222211
Q ss_pred cccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCC
Q 001184 684 EMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPES 763 (1130)
Q Consensus 684 ~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~ 763 (1130)
T Consensus 242 -------------------------------------------------------------------------------- 241 (691)
T KOG2048|consen 242 -------------------------------------------------------------------------------- 241 (691)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEec
Q 001184 764 TDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSK 843 (1130)
Q Consensus 764 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~ 843 (1130)
..|.+.|.+++.++++++++++|-|+.+..|...+... -|- .......|...+++++..+
T Consensus 242 ~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~-------------~wv-------~~~~r~~h~hdvrs~av~~ 301 (691)
T KOG2048|consen 242 SCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS-------------EWV-------INSRRDLHAHDVRSMAVIE 301 (691)
T ss_pred hhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc-------------cee-------eeccccCCcccceeeeeec
Confidence 12678889999999999999999999998876544211 022 1122236889999999988
Q ss_pred CCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEE-EEEeCCCCcEEEEEeCCCcEEEEEeecCe---------EEEE
Q 001184 844 NDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTF-LAFHPQDNNIIAIGMEDSTIQIYNVRVDE---------VKTK 912 (1130)
Q Consensus 844 dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~-l~~sp~~~~~lasg~~dg~v~iwd~~~~~---------~~~~ 912 (1130)
+ .+++|+ |..+.+-.....+...-......+-.+ +...| .++|..--.+..+.+|.+.+.. +.+-
T Consensus 302 ~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~--~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl 377 (691)
T KOG2048|consen 302 N--ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAP--ENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKL 377 (691)
T ss_pred c--eEEecceeeEEEEccccccCchhhhccccccccceeecCc--cceEEEEeccccccceeccCcccccccChhhheee
Confidence 8 677776 777776655432111111000001111 22233 3445555566778888876541 1222
Q ss_pred EecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEE-E-cCCcEEE
Q 001184 913 LKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV-N-HETQLAI 990 (1130)
Q Consensus 913 l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~-~d~~i~v 990 (1130)
.......|.+-+.||||++++.+.-. .+++|.+............... ...-.+..+.|+-|+..++. + ....+.+
T Consensus 378 ~~k~~~nIs~~aiSPdg~~Ia~st~~-~~~iy~L~~~~~vk~~~v~~~~-~~~~~a~~i~ftid~~k~~~~s~~~~~le~ 455 (691)
T KOG2048|consen 378 FTKEKENISCAAISPDGNLIAISTVS-RTKIYRLQPDPNVKVINVDDVP-LALLDASAISFTIDKNKLFLVSKNIFSLEE 455 (691)
T ss_pred ecCCccceeeeccCCCCCEEEEeecc-ceEEEEeccCcceeEEEeccch-hhhccceeeEEEecCceEEEEecccceeEE
Confidence 22234569999999999999977643 4788887763322222111110 11135778888888877665 4 5777888
Q ss_pred EECCCcee--eeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEE
Q 001184 991 YDGSKMEC--IRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVV 1068 (1130)
Q Consensus 991 ~d~~~~~~--~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1068 (1130)
+++.+... +..+... +--..|..+..|+||+|||+.+.+|.|.+|++++++....... -...+++.
T Consensus 456 ~el~~ps~kel~~~~~~-~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~r-----------ln~~vTa~ 523 (691)
T KOG2048|consen 456 FELETPSFKELKSIQSQ-AKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVR-----------LNIDVTAA 523 (691)
T ss_pred EEecCcchhhhhccccc-cCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhc-----------cCcceeee
Confidence 88775432 2222222 1256899999999999999999999999999999887655421 11456778
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEeCC
Q 001184 1069 TSHPQEPNQLAVGLTDGSVKVIEPS 1093 (1130)
Q Consensus 1069 ~~~~~~~~~l~s~~~Dg~v~vW~~~ 1093 (1130)
+++|.+...|+.+..|+.|.-+|+.
T Consensus 524 ~~~~~~~~~lvvats~nQv~efdi~ 548 (691)
T KOG2048|consen 524 AFSPFVRNRLVVATSNNQVFEFDIE 548 (691)
T ss_pred eccccccCcEEEEecCCeEEEEecc
Confidence 8887778899999999999999994
No 55
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.98 E-value=6.6e-32 Score=277.32 Aligned_cols=291 Identities=18% Similarity=0.268 Sum_probs=247.2
Q ss_pred ccceeeec-cCCCCEEEEEEec-CCCeEEEEEeCcCeEEEEeCCC-CceeecccceeeeccccccceeeeeecCCCccEE
Q 001184 337 PRAVACTM-HQGSSVVSMDFHP-FHHTLLVVGCGDGEITLWDVGL-RERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVS 413 (1130)
Q Consensus 337 ~~~~~~~~-~h~~~V~~v~fsp-dg~~llasg~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 413 (1130)
|..+++++ +|...|+++.|.| .+ .||++|+.|+.|+||++.. +++++ ++.+|..+|.
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~-hLlLS~gmD~~vklW~vy~~~~~lr-------------------tf~gH~k~Vr 262 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKG-HLLLSGGMDGLVKLWNVYDDRRCLR-------------------TFKGHRKPVR 262 (503)
T ss_pred cHhheeeccCCccccchhhhcccee-eEEEecCCCceEEEEEEecCcceeh-------------------hhhcchhhhh
Confidence 56666776 4999999999999 56 5899999999999999987 66665 5889999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeE
Q 001184 414 RVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQ 492 (1130)
Q Consensus 414 ~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~ 492 (1130)
.++|+++|..+.+++.|+.|++||+++|+++.. +. ....++++.|.||+.+ .+++|+.|+.|+.|| .+++.++.
T Consensus 263 d~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~---f~-~~~~~~cvkf~pd~~n-~fl~G~sd~ki~~wDiRs~kvvqe 337 (503)
T KOG0282|consen 263 DASFNNCGTSFLSASFDRFLKLWDTETGQVLSR---FH-LDKVPTCVKFHPDNQN-IFLVGGSDKKIRQWDIRSGKVVQE 337 (503)
T ss_pred hhhccccCCeeeeeecceeeeeeccccceEEEE---Ee-cCCCceeeecCCCCCc-EEEEecCCCcEEEEeccchHHHHH
Confidence 999999999999999999999999999997753 22 3446899999999955 899999999999999 89999999
Q ss_pred ecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeee-cCCCccEEEEEEecCCCeEEEeeecCCCCcEEEE
Q 001184 493 FEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDY-DAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVE 571 (1130)
Q Consensus 493 ~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1130)
+..|-+.|..+.|. +++..+++.++|+.+++|+.+..-.+... ....+...++...|++.+++.-+. ++.|.+
T Consensus 338 Yd~hLg~i~~i~F~--~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~----dN~i~i 411 (503)
T KOG0282|consen 338 YDRHLGAILDITFV--DEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM----DNYIAI 411 (503)
T ss_pred HHhhhhheeeeEEc--cCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhcc----CceEEE
Confidence 99999999999985 46689999999999999999876665432 333446778999999999998776 889999
Q ss_pred eeCCCC---ceeEEEecccCcee-EEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcC-CCCE
Q 001184 572 WNESEG---ALKRTYIGFRKKSA-GVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK-EGNL 646 (1130)
Q Consensus 572 wd~~~~---~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~-~~~~ 646 (1130)
+.+... ...+.+.||..... ..+.|||||.+|++|+.||.+.+||.++-+.+..++.+.. .+..+.|+| ....
T Consensus 412 fs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~--~ci~v~wHP~e~Sk 489 (503)
T KOG0282|consen 412 FSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQ--PCIGVDWHPVEPSK 489 (503)
T ss_pred EecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCc--ceEEEEecCCCcce
Confidence 986542 23456777765433 3489999999999999999999999999999999988754 789999999 4568
Q ss_pred EEEEeCCCcEEEEE
Q 001184 647 LVVTTADQGIKILA 660 (1130)
Q Consensus 647 l~~~~~dg~i~iw~ 660 (1130)
+|+++.||.|++|+
T Consensus 490 vat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 490 VATCGWDGLIKIWD 503 (503)
T ss_pred eEecccCceeEecC
Confidence 99999999999996
No 56
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.98 E-value=8.2e-32 Score=270.17 Aligned_cols=284 Identities=15% Similarity=0.242 Sum_probs=247.6
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCC
Q 001184 409 SISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGR 488 (1130)
Q Consensus 409 ~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~ 488 (1130)
+..|..|.|.|+|+.|++|+..|.+.+|+..+- .....++.|..+|+++.|+++|. +++||+.+|.|++|+....
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~f---nFEtilQaHDs~Vr~m~ws~~g~--wmiSgD~gG~iKyWqpnmn 170 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSF---NFETILQAHDSPVRTMKWSHNGT--WMISGDKGGMIKYWQPNMN 170 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCcee---eHHHHhhhhcccceeEEEccCCC--EEEEcCCCceEEecccchh
Confidence 457999999999999999999999999997542 22224678999999999999999 8999999999999997777
Q ss_pred eeeEecCCC-cCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCc
Q 001184 489 KLFQFEGHE-APVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDS 567 (1130)
Q Consensus 489 ~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~ 567 (1130)
.++.+.+|. ..|++++|+|. ...++++++||+|+|||.........+.+|+-.|.++.|.|.-..+++++. |.
T Consensus 171 nVk~~~ahh~eaIRdlafSpn--DskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgsk----Dn 244 (464)
T KOG0284|consen 171 NVKIIQAHHAEAIRDLAFSPN--DSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSK----DN 244 (464)
T ss_pred hhHHhhHhhhhhhheeccCCC--CceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccC----Cc
Confidence 777777666 89999999873 368999999999999999999988889999999999999999999999986 77
Q ss_pred EEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcC-CCCE
Q 001184 568 HLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK-EGNL 646 (1130)
Q Consensus 568 ~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~-~~~~ 646 (1130)
.|++||.+++.++.++.+|.. .|..+.|++++++|+++|.|..++++|+++.+.+..+..|.. .+.++.|+| ...+
T Consensus 245 lVKlWDprSg~cl~tlh~HKn-tVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkk--dv~~~~WhP~~~~l 321 (464)
T KOG0284|consen 245 LVKLWDPRSGSCLATLHGHKN-TVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKK--DVTSLTWHPLNESL 321 (464)
T ss_pred eeEeecCCCcchhhhhhhccc-eEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchh--hheeeccccccccc
Confidence 999999999999999999877 899999999999999999999999999998888888776654 799999999 6778
Q ss_pred EEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCcccc
Q 001184 647 LVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAAR 726 (1130)
Q Consensus 647 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (1130)
|.+|+.||.|..|.+..... +.. +
T Consensus 322 ftsgg~Dgsvvh~~v~~~~p-~~~-------------------------i------------------------------ 345 (464)
T KOG0284|consen 322 FTSGGSDGSVVHWVVGLEEP-LGE-------------------------I------------------------------ 345 (464)
T ss_pred eeeccCCCceEEEecccccc-ccC-------------------------C------------------------------
Confidence 99999999999998762210 000 0
Q ss_pred CCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCC
Q 001184 727 GIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNR 798 (1130)
Q Consensus 727 ~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~ 798 (1130)
..+|...|.+++|.|=|..|++++.|.++++|.-..
T Consensus 346 ------------------------------------~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~r 381 (464)
T KOG0284|consen 346 ------------------------------------PPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNR 381 (464)
T ss_pred ------------------------------------CcccccceeeeeccccceeEeecCCCcceeeeccCC
Confidence 034889999999999999999999999999997443
No 57
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=1.8e-29 Score=276.84 Aligned_cols=282 Identities=26% Similarity=0.422 Sum_probs=249.1
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEE
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 424 (1130)
+|.+.|++++|+|+++ +|++|+.||.|++|++.+++... .+..|...+.++.|+|++++|
T Consensus 7 ~h~~~i~~~~~~~~~~-~l~~~~~~g~i~i~~~~~~~~~~-------------------~~~~~~~~i~~~~~~~~~~~l 66 (289)
T cd00200 7 GHTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGELLR-------------------TLKGHTGPVRDVAASADGTYL 66 (289)
T ss_pred ccCCCEEEEEEcCCCC-EEEEeecCcEEEEEEeeCCCcEE-------------------EEecCCcceeEEEECCCCCEE
Confidence 5999999999999998 58899999999999998876443 356888899999999999999
Q ss_pred EEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEE
Q 001184 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSV 503 (1130)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~ 503 (1130)
++++.||.|++||+.+++... .+..|...|.++.|+++++ ++++++.|+.|++|| .+++.+..+..|...+.++
T Consensus 67 ~~~~~~~~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ 141 (289)
T cd00200 67 ASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSV 141 (289)
T ss_pred EEEcCCCeEEEEEcCcccceE---EEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEE
Confidence 999999999999999875444 5678998999999999987 788888899999999 6688888898999999999
Q ss_pred eecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEE
Q 001184 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTY 583 (1130)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 583 (1130)
+|++. +.++++++.|+.|++||++..+....+..+...+.++.|+|+++.+++++. ++.|++||..+++.+..+
T Consensus 142 ~~~~~--~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~~~~~~~ 215 (289)
T cd00200 142 AFSPD--GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS----DGTIKLWDLSTGKCLGTL 215 (289)
T ss_pred EEcCc--CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC----CCcEEEEECCCCceecch
Confidence 99765 578888888999999999988888888888889999999999999998875 889999999998888888
Q ss_pred ecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEE
Q 001184 584 IGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILA 660 (1130)
Q Consensus 584 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~ 660 (1130)
..+.. .+.++.|++++.++++++.||.|++||+.+++....+..+. ..+.+++|+|+++++++++.|+.+++|+
T Consensus 216 ~~~~~-~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 216 RGHEN-GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHT--NSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred hhcCC-ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccC--CcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 76655 78999999998888888889999999999988888877443 3799999999999999999999999995
No 58
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.2e-29 Score=289.94 Aligned_cols=291 Identities=27% Similarity=0.405 Sum_probs=246.2
Q ss_pred CccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCC
Q 001184 766 SASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKND 845 (1130)
Q Consensus 766 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg 845 (1130)
+...|.++.|+++|+.+++++.++.+++|+...... .+.. ...+|...|..++|+||+
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~--------------------~~~~--~l~~h~~~v~~~~fs~d~ 215 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS--------------------NLLR--ELSGHTRGVSDVAFSPDG 215 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc--------------------hhhc--cccccccceeeeEECCCC
Confidence 467889999999999999999999999998632110 0111 113799999999999999
Q ss_pred CEEEEEe-CCeEEEEEC-CCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEE
Q 001184 846 SYVMSAG-GGKVSLFNM-MNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGL 923 (1130)
Q Consensus 846 ~~la~~~-dg~i~iwd~-~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l 923 (1130)
+++++++ |++|+|||+ ..+.+++++.+|...|++++|+| .++++++|+.|++|+|||+.+++++..+.+|.+.|+++
T Consensus 216 ~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~ 294 (456)
T KOG0266|consen 216 SYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGL 294 (456)
T ss_pred cEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEE
Confidence 9999998 899999999 66799999999999999999999 66999999999999999999999999999999999999
Q ss_pred EEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCC-CeEEEEEcCCCcEEEEE-cCCcEEEEECCCceeeee
Q 001184 924 AFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPV-GETRVQFHSDQVRLLVN-HETQLAIYDGSKMECIRQ 1001 (1130)
Q Consensus 924 ~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~d~~~l~~~-~d~~i~v~d~~~~~~~~~ 1001 (1130)
+|++|+++|++++.|+.|++||+.++... ........... .+..+.|+|++.+++++ .|+.+++||+..+..+..
T Consensus 295 ~f~~d~~~l~s~s~d~~i~vwd~~~~~~~---~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~ 371 (456)
T KOG0266|consen 295 AFSPDGNLLVSASYDGTIRVWDLETGSKL---CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGT 371 (456)
T ss_pred EECCCCCEEEEcCCCccEEEEECCCCcee---eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceee
Confidence 99999999999999999999999997743 22222333323 78999999999999995 577999999999999999
Q ss_pred eecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEE
Q 001184 1002 WVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVG 1081 (1130)
Q Consensus 1002 ~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 1081 (1130)
+.++......+.+..++++++++++|+.|+.|++||+.++..+..+..+. ...+..+.++|. ..+++++
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~----------~~~~~~~~~~~~-~~~~~s~ 440 (456)
T KOG0266|consen 372 YTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS----------KAAVSDLSSHPT-ENLIASS 440 (456)
T ss_pred ecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC----------CCceeccccCCC-cCeeeec
Confidence 98885321356677778999999999999999999999999888887441 234556788885 7789998
Q ss_pred e--CCCcEEEEeCC
Q 001184 1082 L--TDGSVKVIEPS 1093 (1130)
Q Consensus 1082 ~--~Dg~v~vW~~~ 1093 (1130)
+ .|+.+++|...
T Consensus 441 s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 441 SFEGDGLIRLWKYD 454 (456)
T ss_pred CcCCCceEEEecCC
Confidence 8 69999999864
No 59
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=5.3e-31 Score=246.85 Aligned_cols=284 Identities=19% Similarity=0.252 Sum_probs=250.4
Q ss_pred ccCCCCEEEEEEec---CCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCC
Q 001184 344 MHQGSSVVSMDFHP---FHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD 420 (1130)
Q Consensus 344 ~~h~~~V~~v~fsp---dg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 420 (1130)
-+|..+|..++||| +| ++|++++.||.--+-+=++|..+. ++.||.++|.+..+..|
T Consensus 11 ~ghtrpvvdl~~s~itp~g-~flisa~kd~~pmlr~g~tgdwig-------------------tfeghkgavw~~~l~~n 70 (334)
T KOG0278|consen 11 HGHTRPVVDLAFSPITPDG-YFLISASKDGKPMLRNGDTGDWIG-------------------TFEGHKGAVWSATLNKN 70 (334)
T ss_pred cCCCcceeEEeccCCCCCc-eEEEEeccCCCchhccCCCCCcEE-------------------eeeccCcceeeeecCch
Confidence 36999999999995 67 689999999998888888888886 58899999999999999
Q ss_pred CCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe--cCCCeeeEecCCCc
Q 001184 421 GNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQFEGHEA 498 (1130)
Q Consensus 421 g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd--~~~~~~~~~~~h~~ 498 (1130)
...-|+++.|-+.+|||.-+|..+. .+ .|..-|.+++|+.|.+ +|++|+.++.+||+| ....+...+.+|.+
T Consensus 71 a~~aasaaadftakvw~a~tgdelh---sf-~hkhivk~~af~~ds~--~lltgg~ekllrvfdln~p~App~E~~ghtg 144 (334)
T KOG0278|consen 71 ATRAASAAADFTAKVWDAVTGDELH---SF-EHKHIVKAVAFSQDSN--YLLTGGQEKLLRVFDLNRPKAPPKEISGHTG 144 (334)
T ss_pred hhhhhhhcccchhhhhhhhhhhhhh---hh-hhhheeeeEEecccch--hhhccchHHHhhhhhccCCCCCchhhcCCCC
Confidence 9999999999999999999998776 33 5889999999999999 799999999999999 44556788999999
Q ss_pred CEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCc
Q 001184 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA 578 (1130)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1130)
.|..+.|.... +.+++.+.|++||+||.+++.....+... .+|+++.++++|++|.++- .+.|..||..+..
T Consensus 145 ~Ir~v~wc~eD--~~iLSSadd~tVRLWD~rTgt~v~sL~~~-s~VtSlEvs~dG~ilTia~-----gssV~Fwdaksf~ 216 (334)
T KOG0278|consen 145 GIRTVLWCHED--KCILSSADDKTVRLWDHRTGTEVQSLEFN-SPVTSLEVSQDGRILTIAY-----GSSVKFWDAKSFG 216 (334)
T ss_pred cceeEEEeccC--ceEEeeccCCceEEEEeccCcEEEEEecC-CCCcceeeccCCCEEEEec-----CceeEEecccccc
Confidence 99999997544 67888899999999999999888877644 4699999999999988774 6789999999999
Q ss_pred eeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEE
Q 001184 579 LKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKI 658 (1130)
Q Consensus 579 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~i 658 (1130)
+++.+.... .|.+..++|+...+++|++|+.++.||..+++.+... ..++.++|.|+.|+|+|...++|+.||+|++
T Consensus 217 ~lKs~k~P~--nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~-nkgh~gpVhcVrFSPdGE~yAsGSEDGTirl 293 (334)
T KOG0278|consen 217 LLKSYKMPC--NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY-NKGHFGPVHCVRFSPDGELYASGSEDGTIRL 293 (334)
T ss_pred ceeeccCcc--ccccccccCCCceEEecCcceEEEEEeccCCceeeec-ccCCCCceEEEEECCCCceeeccCCCceEEE
Confidence 998887644 5888899999999999999999999999999988875 2344558999999999999999999999999
Q ss_pred EEcCCC
Q 001184 659 LANADG 664 (1130)
Q Consensus 659 w~~~~~ 664 (1130)
|....+
T Consensus 294 WQt~~~ 299 (334)
T KOG0278|consen 294 WQTTPG 299 (334)
T ss_pred EEecCC
Confidence 998665
No 60
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=6e-31 Score=270.31 Aligned_cols=287 Identities=18% Similarity=0.278 Sum_probs=242.5
Q ss_pred CCCccceEEEEEec-cCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEe
Q 001184 764 TDSASKVARLLYTN-SGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALS 842 (1130)
Q Consensus 764 ~~~~~~i~~l~~s~-~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s 842 (1130)
.+|...|.++.|.| .+..+++++.|+.|+||++ |+ .+.++.... +|..+|..++|+
T Consensus 211 ~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~v-------------------y~--~~~~lrtf~--gH~k~Vrd~~~s 267 (503)
T KOG0282|consen 211 SGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNV-------------------YD--DRRCLRTFK--GHRKPVRDASFN 267 (503)
T ss_pred cCCccccchhhhccceeeEEEecCCCceEEEEEE-------------------ec--Ccceehhhh--cchhhhhhhhcc
Confidence 45999999999999 8899999999999999974 33 233333222 799999999999
Q ss_pred cCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCee
Q 001184 843 KNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHIT 921 (1130)
Q Consensus 843 ~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~ 921 (1130)
++|..+.+++ |+.|++||+++|+++..+.. ...++|+.|.|++.+++++|+.|+.|+.||+++++.++.+..|-+.|.
T Consensus 268 ~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~ 346 (503)
T KOG0282|consen 268 NCGTSFLSASFDRFLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAIL 346 (503)
T ss_pred ccCCeeeeeecceeeeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhhee
Confidence 9999999998 99999999999999999974 567899999996668999999999999999999999999999999999
Q ss_pred EEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEE-EcCCcEEEEECCC---ce
Q 001184 922 GLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV-NHETQLAIYDGSK---ME 997 (1130)
Q Consensus 922 ~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~d~~i~v~d~~~---~~ 997 (1130)
.+.|-++|+++++.+.|++++||+....-. +............++..+|.+.++++ +.|+.+.+|.+.. ..
T Consensus 347 ~i~F~~~g~rFissSDdks~riWe~~~~v~-----ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~n 421 (503)
T KOG0282|consen 347 DITFVDEGRRFISSSDDKSVRIWENRIPVP-----IKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLN 421 (503)
T ss_pred eeEEccCCceEeeeccCccEEEEEcCCCcc-----chhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccC
Confidence 999999999999999999999999987433 22222222245678999999999999 7899999998753 22
Q ss_pred eeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCE
Q 001184 998 CIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQ 1077 (1130)
Q Consensus 998 ~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1077 (1130)
..+.+.+|.. .+--..+.|||||++|++|+.||.+.+||..+-+++..+.. |.-.++.+.|+|.....
T Consensus 422 kkK~feGh~v-aGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lka-----------h~~~ci~v~wHP~e~Sk 489 (503)
T KOG0282|consen 422 KKKRFEGHSV-AGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKA-----------HDQPCIGVDWHPVEPSK 489 (503)
T ss_pred Hhhhhcceec-cCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcccc-----------CCcceEEEEecCCCcce
Confidence 3344555533 44556889999999999999999999999999999988874 34567889999999999
Q ss_pred EEEEeCCCcEEEEe
Q 001184 1078 LAVGLTDGSVKVIE 1091 (1130)
Q Consensus 1078 l~s~~~Dg~v~vW~ 1091 (1130)
+++|+.||.|++|+
T Consensus 490 vat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 490 VATCGWDGLIKIWD 503 (503)
T ss_pred eEecccCceeEecC
Confidence 99999999999996
No 61
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=1.4e-28 Score=304.22 Aligned_cols=292 Identities=14% Similarity=0.186 Sum_probs=235.9
Q ss_pred ccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcC-CCC
Q 001184 344 MHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP-DGN 422 (1130)
Q Consensus 344 ~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~ 422 (1130)
..|...|++++|+|+|+ ++|+|+.|+.|+|||..+...... . ...+...+ .+...|.+++|+| ++.
T Consensus 480 ~~~~~~V~~i~fs~dg~-~latgg~D~~I~iwd~~~~~~~~~-~----------~~~~~~~~-~~~~~v~~l~~~~~~~~ 546 (793)
T PLN00181 480 LNSSNLVCAIGFDRDGE-FFATAGVNKKIKIFECESIIKDGR-D----------IHYPVVEL-ASRSKLSGICWNSYIKS 546 (793)
T ss_pred cCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEECCccccccc-c----------cccceEEe-cccCceeeEEeccCCCC
Confidence 34899999999999998 599999999999999864211000 0 00000012 2346799999987 578
Q ss_pred EEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEec-CCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCE
Q 001184 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSY-PNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPV 500 (1130)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~-d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v 500 (1130)
+||+++.||+|++||+.+++.+. .+.+|.+.|++++|+| ++. +|++|+.|++|++|| .++..+..+..+ ..|
T Consensus 547 ~las~~~Dg~v~lWd~~~~~~~~---~~~~H~~~V~~l~~~p~~~~--~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v 620 (793)
T PLN00181 547 QVASSNFEGVVQVWDVARSQLVT---EMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQGVSIGTIKTK-ANI 620 (793)
T ss_pred EEEEEeCCCeEEEEECCCCeEEE---EecCCCCCEEEEEEcCCCCC--EEEEEcCCCEEEEEECCCCcEEEEEecC-CCe
Confidence 99999999999999999876544 5789999999999997 667 899999999999999 778888888754 678
Q ss_pred EEEeecccCCccEEEEEecCCcEEEEEccCCc-ceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCC---
Q 001184 501 YSVCPHQKENIHFIFSTAVDGKIKAWLYDNVG-SRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE--- 576 (1130)
Q Consensus 501 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~--- 576 (1130)
.++.|.+ +++.+|++|+.||.|++||++... ....+..|...|.++.|. ++.++++++. |+.|++||+..
T Consensus 621 ~~v~~~~-~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~----D~~ikiWd~~~~~~ 694 (793)
T PLN00181 621 CCVQFPS-ESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSST----DNTLKLWDLSMSIS 694 (793)
T ss_pred EEEEEeC-CCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEEC----CCEEEEEeCCCCcc
Confidence 8998854 456899999999999999998765 355677888899999997 7888999886 89999999874
Q ss_pred ---CceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEec-----------cCCCCCcceEEEcC
Q 001184 577 ---GALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEA-----------EGGLPSLPRLRFNK 642 (1130)
Q Consensus 577 ---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-----------~~~~~~i~~v~~s~ 642 (1130)
...+..+.+|.. .+.+++|++++++|++|+.|+.|++|+......+..... ..+...|.+++|+|
T Consensus 695 ~~~~~~l~~~~gh~~-~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~ 773 (793)
T PLN00181 695 GINETPLHSFMGHTN-VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRG 773 (793)
T ss_pred ccCCcceEEEcCCCC-CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcC
Confidence 356778888765 788899999999999999999999999876654433221 22233589999999
Q ss_pred CCCEEEEEeCCCcEEEEEc
Q 001184 643 EGNLLVVTTADQGIKILAN 661 (1130)
Q Consensus 643 ~~~~l~~~~~dg~i~iw~~ 661 (1130)
++..|++|+.||.|+||++
T Consensus 774 ~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 774 QSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCCeEEEecCCCcEEEEec
Confidence 9999999999999999985
No 62
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.9e-29 Score=233.29 Aligned_cols=248 Identities=20% Similarity=0.275 Sum_probs=221.2
Q ss_pred eeeeecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcE
Q 001184 401 QAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLI 480 (1130)
Q Consensus 401 ~~~~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v 480 (1130)
...++..|+++|..+.|+-||+|.++++.|++|++|+...|.+++ ++.+|...|.+++.+.|+. .+++|+.|+.|
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dns--kf~s~GgDk~v 83 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNS--KFASCGGDKAV 83 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeecccccccc--ccccCCCCceE
Confidence 344688999999999999999999999999999999999998776 7899999999999999998 69999999999
Q ss_pred EEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCC--cceeeecCCCccEEEEEEecCCCeEE
Q 001184 481 RVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNV--GSRVDYDAPGLWCTTMLYSADGSRLF 557 (1130)
Q Consensus 481 ~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~ 557 (1130)
.+|| .+|+.++.|.+|.+.|+.+.|+ .+...+++|+.|..+++||.++. ++++.+......|.++..+ +..++
T Consensus 84 ~vwDV~TGkv~Rr~rgH~aqVNtV~fN--eesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIv 159 (307)
T KOG0316|consen 84 QVWDVNTGKVDRRFRGHLAQVNTVRFN--EESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIV 159 (307)
T ss_pred EEEEcccCeeeeecccccceeeEEEec--CcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEE
Confidence 9999 9999999999999999999995 45579999999999999998764 4556666667778888775 56788
Q ss_pred EeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcce
Q 001184 558 SCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPR 637 (1130)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~ 637 (1130)
+++. ||+++.||++.|+....+.++ +|++++|+++++..++++.|+++++.|-.+|+++....+|....--..
T Consensus 160 aGS~----DGtvRtydiR~G~l~sDy~g~---pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykld 232 (307)
T KOG0316|consen 160 AGSV----DGTVRTYDIRKGTLSSDYFGH---PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLD 232 (307)
T ss_pred eecc----CCcEEEEEeecceeehhhcCC---cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeee
Confidence 8876 999999999999988777765 899999999999999999999999999999999999998876555567
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 638 LRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 638 v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
++++.....+++|+.||.+.+||+.+.
T Consensus 233 c~l~qsdthV~sgSEDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 233 CCLNQSDTHVFSGSEDGKVYFWDLVDE 259 (307)
T ss_pred eeecccceeEEeccCCceEEEEEeccc
Confidence 788888889999999999999999776
No 63
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=2.2e-30 Score=251.04 Aligned_cols=293 Identities=19% Similarity=0.280 Sum_probs=244.8
Q ss_pred CccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCC
Q 001184 766 SASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKND 845 (1130)
Q Consensus 766 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg 845 (1130)
..+.+.+..|+|||+++++++-||.|.+|++.+++...+-+-.+ +.... -+...|.|+.||.|.
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQA---------qd~fM-------Mmd~aVlci~FSRDs 275 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQA---------QDNFM-------MMDDAVLCISFSRDS 275 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhh---------hccee-------ecccceEEEeecccH
Confidence 45667789999999999999999999999988776544332211 11111 368899999999999
Q ss_pred CEEEEEe-CCeEEEEECCCceeEEEEe-CCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEE
Q 001184 846 SYVMSAG-GGKVSLFNMMNFKVMTTFM-SPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGL 923 (1130)
Q Consensus 846 ~~la~~~-dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l 923 (1130)
..+|+|+ ||.|++|.+.+|.|++.+. .|...|+|+.||. |+..+.+++.|.+++|.-+++|+++..++||+.-|+..
T Consensus 276 EMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a 354 (508)
T KOG0275|consen 276 EMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEA 354 (508)
T ss_pred HHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCccccccce
Confidence 9999999 9999999999999999998 8999999999999 77778899999999999999999999999999999999
Q ss_pred EEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCC--cEEEEEcCCcEEEEECCCceeeee
Q 001184 924 AFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQ--VRLLVNHETQLAIYDGSKMECIRQ 1001 (1130)
Q Consensus 924 ~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~--~~l~~~~d~~i~v~d~~~~~~~~~ 1001 (1130)
.|++||.++++++.||+|++|+.++.++...... ......|..+..-|.+ .++++...++++|.++. |+.++.
T Consensus 355 ~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~----~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrs 429 (508)
T KOG0275|consen 355 TFTDDGHHIISASSDGTVKVWHGKTTECLSTFKP----LGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRS 429 (508)
T ss_pred EEcCCCCeEEEecCCccEEEecCcchhhhhhccC----CCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEee
Confidence 9999999999999999999999999887654322 1233566666665543 34555678899999986 778888
Q ss_pred eecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEE
Q 001184 1002 WVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVG 1081 (1130)
Q Consensus 1002 ~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 1081 (1130)
+.......+...+.+.||.|.++++.++|+.++.+.+.+|.+...+..+. ..++.+..+|. .++|++=
T Consensus 430 fsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhE-----------kdvIGl~HHPH-qNllAsY 497 (508)
T KOG0275|consen 430 FSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHE-----------KDVIGLTHHPH-QNLLASY 497 (508)
T ss_pred eccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccc-----------ccccccccCcc-cchhhhh
Confidence 87666667788889999999999999999999999999999988876544 34555888884 7899999
Q ss_pred eCCCcEEEEeC
Q 001184 1082 LTDGSVKVIEP 1092 (1130)
Q Consensus 1082 ~~Dg~v~vW~~ 1092 (1130)
++||.+++|..
T Consensus 498 sEDgllKLWkp 508 (508)
T KOG0275|consen 498 SEDGLLKLWKP 508 (508)
T ss_pred cccchhhhcCC
Confidence 99999999963
No 64
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=7.8e-28 Score=221.80 Aligned_cols=310 Identities=18% Similarity=0.231 Sum_probs=241.4
Q ss_pred ceeeeccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEc
Q 001184 339 AVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWS 418 (1130)
Q Consensus 339 ~~~~~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 418 (1130)
+.+.++.....|.+|+|+|.|. +.|+|+...+.+|-.+..-...+. -.+.....+....+-.+.|.+.|.|.+||
T Consensus 24 ~~i~~l~dsqairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~----~hea~~~pp~v~~kr~khhkgsiyc~~ws 98 (350)
T KOG0641|consen 24 EAINILEDSQAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRH----AHEAAKQPPSVLCKRNKHHKGSIYCTAWS 98 (350)
T ss_pred EEEEEecchhheeeEEecCCCc-eEEeccCCceEEEEccccccCccc----ccccccCCCeEEeeeccccCccEEEEEec
Confidence 4566788899999999999998 799999999999886543211110 00000001112223456899999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEec--CCccceeeeeeecCCCCeeEEEEecC---CCceEEEEEc-CCCcEEEEe-cCCCeee
Q 001184 419 PDGNFIGVAFTKHLIHLYTYQ--GSNDLCQSLEIDAHVGGVNDLAFSYP---NKQLCIVTCG-DDKLIRVWD-LSGRKLF 491 (1130)
Q Consensus 419 pdg~~las~~~d~~i~vwd~~--~~~~~~~~~~~~~h~~~V~~i~~s~d---~~~l~l~s~s-~d~~v~iwd-~~~~~~~ 491 (1130)
|+|++||+|+.|++|++.-.. +.+......++.-|.+.|.+++|..+ +.. +|++++ .|..|++-| .+|+..+
T Consensus 99 ~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~-il~s~gagdc~iy~tdc~~g~~~~ 177 (350)
T KOG0641|consen 99 PCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA-ILASAGAGDCKIYITDCGRGQGFH 177 (350)
T ss_pred CccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce-EEEecCCCcceEEEeecCCCCcce
Confidence 999999999999999986554 43444455568889999999999764 222 566654 588899999 9999999
Q ss_pred EecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecC-------CCccEEEEEEecCCCeEEEeeecCC
Q 001184 492 QFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA-------PGLWCTTMLYSADGSRLFSCGTSKE 564 (1130)
Q Consensus 492 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~~~~ 564 (1130)
.+.||++-|.++- +-++-.+++|+.|.+|++||++-..+...+.. ....|.+++..|.|++|+++..
T Consensus 178 a~sghtghilaly---swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~--- 251 (350)
T KOG0641|consen 178 ALSGHTGHILALY---SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHA--- 251 (350)
T ss_pred eecCCcccEEEEE---EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccC---
Confidence 9999999998874 22447899999999999999998777665432 1247899999999999999876
Q ss_pred CCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC--ceeEEEeccCCCCCcceEEEcC
Q 001184 565 GDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNV--NMLTSTEAEGGLPSLPRLRFNK 642 (1130)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~i~~v~~s~ 642 (1130)
+....+||++.++.++.|..|.. .|.++.|+|...++++++.|..|++-|+... ..+..+-...+...+..+.|+|
T Consensus 252 -dssc~lydirg~r~iq~f~phsa-dir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~ 329 (350)
T KOG0641|consen 252 -DSSCMLYDIRGGRMIQRFHPHSA-DIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHP 329 (350)
T ss_pred -CCceEEEEeeCCceeeeeCCCcc-ceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecC
Confidence 88899999999999999998776 8999999999999999999999999998642 1122222223444678899999
Q ss_pred CCCEEEEEeCCCcEEEEEcC
Q 001184 643 EGNLLVVTTADQGIKILANA 662 (1130)
Q Consensus 643 ~~~~l~~~~~dg~i~iw~~~ 662 (1130)
..-.+++.+.|.++.+|.+.
T Consensus 330 ~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 330 QDFSFISSSADKTATLWALN 349 (350)
T ss_pred ccceeeeccCcceEEEeccC
Confidence 99889999999999999763
No 65
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=5.9e-29 Score=256.35 Aligned_cols=281 Identities=20% Similarity=0.293 Sum_probs=236.9
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 425 (1130)
..+.|++++|||...+=+|+.+ .-.+.||+..+....+ .+......|.++.|-.||++||
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k-------------------~~srFk~~v~s~~fR~DG~Lla 84 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRK-------------------TFSRFKDVVYSVDFRSDGRLLA 84 (487)
T ss_pred ccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhh-------------------hHHhhccceeEEEeecCCeEEE
Confidence 4578999999996654344433 3379999998876654 2334566899999999999999
Q ss_pred EEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEe
Q 001184 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVC 504 (1130)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~ 504 (1130)
+|...|.|+|||+++...++ .+.+|+.+|..+.|+|++.. .+++|++|+.+++|| .+......+.+|++.|.+.+
T Consensus 85 aGD~sG~V~vfD~k~r~iLR---~~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~ 160 (487)
T KOG0310|consen 85 AGDESGHVKVFDMKSRVILR---QLYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGD 160 (487)
T ss_pred ccCCcCcEEEeccccHHHHH---HHhhccCceeEEEecccCCe-EEEecCCCceEEEEEcCCcEEEEEecCCcceeEeec
Confidence 99999999999977644444 57899999999999998876 899999999999999 44555558899999999999
Q ss_pred ecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCC-ceeEEE
Q 001184 505 PHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG-ALKRTY 583 (1130)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~ 583 (1130)
++|.. +.+++|||.||.|++||++.......--.|+.+|..+.+-|.|..+++++ ...+++||+.+| +.+..+
T Consensus 161 ~~~~~-~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-----Gn~vkVWDl~~G~qll~~~ 234 (487)
T KOG0310|consen 161 ISPAN-DHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-----GNSVKVWDLTTGGQLLTSM 234 (487)
T ss_pred cccCC-CeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-----CCeEEEEEecCCceehhhh
Confidence 98754 47999999999999999998865555556889999999999999999997 678999999855 455555
Q ss_pred ecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEE
Q 001184 584 IGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILA 660 (1130)
Q Consensus 584 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~ 660 (1130)
..|+. .|+|+++..++.+|++|+-|+.+++||+.+.+.+..+...+ +|.+++.+|++..++.|..+|.+.+-+
T Consensus 235 ~~H~K-tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~---pvLsiavs~dd~t~viGmsnGlv~~rr 307 (487)
T KOG0310|consen 235 FNHNK-TVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPG---PVLSIAVSPDDQTVVIGMSNGLVSIRR 307 (487)
T ss_pred hcccc-eEEEEEeecCCceEeecccccceEEEEccceEEEEeeeccc---ceeeEEecCCCceEEEecccceeeeeh
Confidence 55655 89999999999999999999999999999999999888765 699999999999999999999987764
No 66
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=3.4e-30 Score=252.33 Aligned_cols=230 Identities=20% Similarity=0.313 Sum_probs=202.7
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCC
Q 001184 409 SISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSG 487 (1130)
Q Consensus 409 ~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~ 487 (1130)
...|.|+.+ |...+++|..|.+|+|||..+-.+++ .+.||++.|.|+.|. .+ ++++|+.|.+|+||| .+|
T Consensus 197 skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~---~L~GHtGSVLCLqyd--~r--viisGSSDsTvrvWDv~tg 267 (499)
T KOG0281|consen 197 SKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLK---ILTGHTGSVLCLQYD--ER--VIVSGSSDSTVRVWDVNTG 267 (499)
T ss_pred CCceEEEEe--cchhhhcccccCceEEeccccHHHHH---hhhcCCCcEEeeecc--ce--EEEecCCCceEEEEeccCC
Confidence 457999988 45689999999999999999877665 689999999999995 44 899999999999999 999
Q ss_pred CeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcce---eeecCCCccEEEEEEecCCCeEEEeeecCC
Q 001184 488 RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSR---VDYDAPGLWCTTMLYSADGSRLFSCGTSKE 564 (1130)
Q Consensus 488 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~ 564 (1130)
+++.++.+|...|..+.|+. .++++++.|.++.+||+.....+ ..+.+|...|+.+.|+ .+++++++.
T Consensus 268 e~l~tlihHceaVLhlrf~n----g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASg--- 338 (499)
T KOG0281|consen 268 EPLNTLIHHCEAVLHLRFSN----GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASG--- 338 (499)
T ss_pred chhhHHhhhcceeEEEEEeC----CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecC---
Confidence 99999999999999999843 58999999999999999877643 3567888899999886 458998875
Q ss_pred CCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCC
Q 001184 565 GDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEG 644 (1130)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~ 644 (1130)
|.+|++|+..+++.++++.+|.. .+.|+.+ .++++++|+.|.+|++||+..|.++..+++|.. -|.++.|. .
T Consensus 339 -DRTikvW~~st~efvRtl~gHkR-GIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe--LvRciRFd--~ 410 (499)
T KOG0281|consen 339 -DRTIKVWSTSTCEFVRTLNGHKR-GIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIRFD--N 410 (499)
T ss_pred -CceEEEEeccceeeehhhhcccc-cceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHH--hhhheeec--C
Confidence 99999999999999999999877 6777666 578999999999999999999999999988765 68999996 5
Q ss_pred CEEEEEeCCCcEEEEEcCCC
Q 001184 645 NLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 645 ~~l~~~~~dg~i~iw~~~~~ 664 (1130)
+.+++|+.||+|++||+..+
T Consensus 411 krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 411 KRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred ceeeeccccceEEEEecccc
Confidence 67999999999999999776
No 67
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=1.4e-28 Score=245.09 Aligned_cols=287 Identities=20% Similarity=0.349 Sum_probs=239.7
Q ss_pred cceeeeccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEE
Q 001184 338 RAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAW 417 (1130)
Q Consensus 338 ~~~~~~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 417 (1130)
++....+-|.+.|.++... ++ .+.+|+.||.++|||.. |+.+. .+.||.++|.+++|
T Consensus 96 P~pl~~~~hdDWVSsv~~~--~~-~IltgsYDg~~riWd~~-Gk~~~-------------------~~~Ght~~ik~v~~ 152 (423)
T KOG0313|consen 96 PKPLQCFLHDDWVSSVKGA--SK-WILTGSYDGTSRIWDLK-GKSIK-------------------TIVGHTGPIKSVAW 152 (423)
T ss_pred CCccccccchhhhhhhccc--Cc-eEEEeecCCeeEEEecC-CceEE-------------------EEecCCcceeeeEE
Confidence 4445556799999999998 44 48999999999999987 55443 57899999998888
Q ss_pred cCCC---CEEEEEeCCCeEEEEEecCCccc-eeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-c-------
Q 001184 418 SPDG---NFIGVAFTKHLIHLYTYQGSNDL-CQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-L------- 485 (1130)
Q Consensus 418 spdg---~~las~~~d~~i~vwd~~~~~~~-~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~------- 485 (1130)
--.. ..|++++.|.++++|.++.+... .......||...|.+++..++|. .+++|+.|.++.||+ .
T Consensus 153 v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~~~~~~~ 230 (423)
T KOG0313|consen 153 VIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVETDEEDEL 230 (423)
T ss_pred EecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCCCccccc
Confidence 5433 36999999999999999876542 22223459999999999999999 899999999999999 2
Q ss_pred ------------------CCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEE
Q 001184 486 ------------------SGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTM 547 (1130)
Q Consensus 486 ------------------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~ 547 (1130)
++.++.++.||..+|.++.|.+ ...+++++.|.+|+.||+.+++....+... ..+.++
T Consensus 231 E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d---~~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i 306 (423)
T KOG0313|consen 231 ESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD---ATVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCI 306 (423)
T ss_pred cccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC---CCceEeecccceEEEEEeecccceeeeecC-cceeEe
Confidence 1224667889999999999965 358999999999999999999888876644 458999
Q ss_pred EEecCCCeEEEeeecCCCCcEEEEeeCCCCc---eeEEEecccCceeEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCc-e
Q 001184 548 LYSADGSRLFSCGTSKEGDSHLVEWNESEGA---LKRTYIGFRKKSAGVVQFDTTRN-RILAAGEDNQIKFWDMDNVN-M 622 (1130)
Q Consensus 548 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~-~ 622 (1130)
.++|..++|++++. +..+++||.+++. ..+.+.+|.+ .|.++.|+|... .|++|+.|+++++||+++.. +
T Consensus 307 ~~~~~~~Ll~~gss----dr~irl~DPR~~~gs~v~~s~~gH~n-wVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~p 381 (423)
T KOG0313|consen 307 SYSPLSKLLASGSS----DRHIRLWDPRTGDGSVVSQSLIGHKN-WVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAP 381 (423)
T ss_pred ecccccceeeecCC----CCceeecCCCCCCCceeEEeeecchh-hhhheecCCCCceEEEEEecCCeEEEEEeccCCCc
Confidence 99999999999987 8999999998764 4567888877 899999999876 67789999999999999877 8
Q ss_pred eEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001184 623 LTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1130)
Q Consensus 623 ~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~ 661 (1130)
+..+..|.. .|.++.|+. +..+++|+.|++|+|+..
T Consensus 382 lydI~~h~D--Kvl~vdW~~-~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 382 LYDIAGHND--KVLSVDWNE-GGLIVSGGADNKLRIFKG 417 (423)
T ss_pred ceeeccCCc--eEEEEeccC-CceEEeccCcceEEEecc
Confidence 888877654 899999986 668999999999999864
No 68
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=1.2e-27 Score=262.56 Aligned_cols=247 Identities=24% Similarity=0.405 Sum_probs=217.6
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iw 483 (1130)
.+++|.+.|.+++|+|++++|++++.||.|++|++.+++... .+..|...+..+.|+++++ .+++++.|+.|++|
T Consensus 4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~ 78 (289)
T cd00200 4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR---TLKGHTGPVRDVAASADGT--YLASGSSDKTIRLW 78 (289)
T ss_pred HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE---EEecCCcceeEEEECCCCC--EEEEEcCCCeEEEE
Confidence 366899999999999999999999999999999999876433 5678999999999999998 79999999999999
Q ss_pred e-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeec
Q 001184 484 D-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1130)
Q Consensus 484 d-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1130)
| .+++.+..+..|...+.++.|++. +.++++++.|+.+++||+++.+....+..+...+.++.|+|++.++++++.
T Consensus 79 ~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~- 155 (289)
T cd00200 79 DLETGECVRTLTGHTSYVSSVAFSPD--GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQ- 155 (289)
T ss_pred EcCcccceEEEeccCCcEEEEEEcCC--CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcC-
Confidence 9 666788889999999999999765 568888888999999999988877788878888999999999998888764
Q ss_pred CCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcC
Q 001184 563 KEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK 642 (1130)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~ 642 (1130)
++.|++||..+++.+..+..+.. .+.++.|+|+++.+++++.|+.|++||+..++.+..+..+.. .+.++.|+|
T Consensus 156 ---~~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~~ 229 (289)
T cd00200 156 ---DGTIKLWDLRTGKCVATLTGHTG-EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHEN--GVNSVAFSP 229 (289)
T ss_pred ---CCcEEEEEccccccceeEecCcc-ccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCC--ceEEEEEcC
Confidence 78999999999988888887654 799999999999999999999999999999888877754443 789999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCC
Q 001184 643 EGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 643 ~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
++.++++++.++.+++|++.++
T Consensus 230 ~~~~~~~~~~~~~i~i~~~~~~ 251 (289)
T cd00200 230 DGYLLASGSEDGTIRVWDLRTG 251 (289)
T ss_pred CCcEEEEEcCCCcEEEEEcCCc
Confidence 9888888888999999998654
No 69
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=1.5e-27 Score=294.89 Aligned_cols=270 Identities=16% Similarity=0.230 Sum_probs=215.2
Q ss_pred cCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCC----ccc
Q 001184 369 DGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGS----NDL 444 (1130)
Q Consensus 369 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~----~~~ 444 (1130)
+|.+++|+..+.+..... ...-+..|.+.|.+++|+|||++||+|+.|+.|+|||+... ...
T Consensus 457 ~gl~~~~~~~~~~~~~~~--------------~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~ 522 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADL--------------KQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDI 522 (793)
T ss_pred hhhhhhhcccceEEEEee--------------ccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccccc
Confidence 677888888765543210 00124468999999999999999999999999999997542 111
Q ss_pred e-eeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCc
Q 001184 445 C-QSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGK 522 (1130)
Q Consensus 445 ~-~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~ 522 (1130)
. ....+. +...|.+++|++.... +|++++.|++|++|| .+++.+..+.+|.+.|++++|++. ++.+|++|+.|++
T Consensus 523 ~~~~~~~~-~~~~v~~l~~~~~~~~-~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~-~~~~L~Sgs~Dg~ 599 (793)
T PLN00181 523 HYPVVELA-SRSKLSGICWNSYIKS-QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSA-DPTLLASGSDDGS 599 (793)
T ss_pred ccceEEec-ccCceeeEEeccCCCC-EEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCC-CCCEEEEEcCCCE
Confidence 1 112233 4567999999986433 799999999999999 778889999999999999999763 4579999999999
Q ss_pred EEEEEccCCcceeeecCCCccEEEEEEe-cCCCeEEEeeecCCCCcEEEEeeCCCCc-eeEEEecccCceeEEEEEcCCC
Q 001184 523 IKAWLYDNVGSRVDYDAPGLWCTTMLYS-ADGSRLFSCGTSKEGDSHLVEWNESEGA-LKRTYIGFRKKSAGVVQFDTTR 600 (1130)
Q Consensus 523 i~vwd~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~ 600 (1130)
|++||+++......+..+ ..+.++.|. ++|.++++++. ++.|++||+++++ .+..+.+|.. .|.++.|. ++
T Consensus 600 v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~----dg~I~iwD~~~~~~~~~~~~~h~~-~V~~v~f~-~~ 672 (793)
T PLN00181 600 VKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSA----DHKVYYYDLRNPKLPLCTMIGHSK-TVSYVRFV-DS 672 (793)
T ss_pred EEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeC----CCeEEEEECCCCCccceEecCCCC-CEEEEEEe-CC
Confidence 999999988777766644 568899995 57899999886 8999999998765 4667777665 78999997 67
Q ss_pred CEEEEEeCCCcEEEEeCCCC------ceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 601 NRILAAGEDNQIKFWDMDNV------NMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 601 ~~l~~~~~dg~i~vwd~~~~------~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
.++++++.|+.|++||+..+ ..+..+..|. ..+.+++|+|++.+|++|+.|+.|++|+....
T Consensus 673 ~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~--~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 673 STLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHT--NVKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred CEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCC--CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 89999999999999999743 4566666554 36889999999999999999999999997544
No 70
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=2.5e-29 Score=252.91 Aligned_cols=291 Identities=16% Similarity=0.244 Sum_probs=249.7
Q ss_pred cccceeeecc-CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEE
Q 001184 336 LPRAVACTMH-QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSR 414 (1130)
Q Consensus 336 ~~~~~~~~~~-h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 414 (1130)
.|......++ |..+|..+.|-++..+ |++|+.|..|++|++..++.... .++.|..+.|+.
T Consensus 163 lpS~~~~~ld~h~gev~~v~~l~~sdt-latgg~Dr~Ik~W~v~~~k~~~~-----------------~tLaGs~g~it~ 224 (459)
T KOG0288|consen 163 LPSRALFVLDAHEGEVHDVEFLRNSDT-LATGGSDRIIKLWNVLGEKSELI-----------------STLAGSLGNITS 224 (459)
T ss_pred cchhhhhhhhccccccceeEEccCcch-hhhcchhhhhhhhhcccchhhhh-----------------hhhhccCCCcce
Confidence 3455555665 9999999999999664 99999999999999987763211 157788899999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEe
Q 001184 415 VAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQF 493 (1130)
Q Consensus 415 v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~ 493 (1130)
+.|.++++++++++.|+.+++|++...+... ++.||++.|+++.|..... .+++|+.|.+|++|| .++.|.+++
T Consensus 225 ~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~---TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C~kt~ 299 (459)
T KOG0288|consen 225 IDFDSDNKHVIAASNDKNLRLWNVDSLRLRH---TLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYCSKTV 299 (459)
T ss_pred eeecCCCceEEeecCCCceeeeeccchhhhh---hhcccccceeeehhhcccc--ceeeccccchhhhhhhhhhheeccc
Confidence 9999999999999999999999999876554 7899999999999998776 599999999999999 777777766
Q ss_pred cCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEee
Q 001184 494 EGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWN 573 (1130)
Q Consensus 494 ~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd 573 (1130)
. ....+..++.. ...+++|..|++|++||.+..........++ .|+++..+++|..+.+++. +..+.+.|
T Consensus 300 l-~~S~cnDI~~~----~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssR----Ddtl~viD 369 (459)
T KOG0288|consen 300 L-PGSQCNDIVCS----ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSR----DDTLKVID 369 (459)
T ss_pred c-ccccccceEec----ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecC----CCceeeee
Confidence 4 33445555543 2568899999999999999999988888776 7999999999999999976 88999999
Q ss_pred CCCCceeEEEeccc---CceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEE
Q 001184 574 ESEGALKRTYIGFR---KKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVT 650 (1130)
Q Consensus 574 ~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~ 650 (1130)
+++......+.... ....+.+.|+|++.|+++|+.||.|+||++.++++...+........|++++|+|.|..|+++
T Consensus 370 lRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsa 449 (459)
T KOG0288|consen 370 LRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSA 449 (459)
T ss_pred cccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcc
Confidence 99999888876432 224777999999999999999999999999999999999887766679999999999999999
Q ss_pred eCCCcEEEE
Q 001184 651 TADQGIKIL 659 (1130)
Q Consensus 651 ~~dg~i~iw 659 (1130)
+.++.+.+|
T Consensus 450 dk~~~v~lW 458 (459)
T KOG0288|consen 450 DKQKAVTLW 458 (459)
T ss_pred cCCcceEec
Confidence 999999999
No 71
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=2.1e-28 Score=236.39 Aligned_cols=363 Identities=18% Similarity=0.288 Sum_probs=263.1
Q ss_pred CChHHHHHHHHHHHHHHHhhccCCCCCCC-------c--ccccccccCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCC
Q 001184 166 LKTSRLRTLINQSLNWQHQLCKNPRPNPD-------I--KTLFVDHSCSPPNGARAPTPVTLPVAAVAKPATYAPLGAHA 236 (1130)
Q Consensus 166 ~p~~rL~~ll~qa~~~q~~~~~~~~~~~~-------~--~sl~~~h~c~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 236 (1130)
.|++||+.|+.-.++.-...-++-..... . ..|-.|-.-+. ..|.|. .-+.--|+.|+
T Consensus 46 ~PserLl~lv~~gmq~~~d~~~~~~~~S~~~~t~p~~~giDle~dadaq~----~s~e~~---------~yEt~ylt~HK 112 (430)
T KOG0640|consen 46 APSERLLHLVAKGMQAENDGDLRAVSSSVLLITTPVTAGIDLEFDADAQG----SSPEPS---------EYETKYLTSHK 112 (430)
T ss_pred CCHHHHHHHHHHHhhcccCcceecccccccceeccCcCceeeeecccccc----CCCCCc---------ccceEEEeecc
Confidence 89999999998887765554332211000 0 01111111111 012222 12333488888
Q ss_pred CCCCCCccccCchhhhhccccCCCCCcccccccccCCCCCCCCccccccCCCCCCCCCccccCCCCChHHHHHhhcccCC
Q 001184 237 VPFPPAVAAANANALAGWMMNANPSSSIQSSVVAASSLPVQPNQVSVLKHPRAPSNTLGMIDYPSSDHEQLKKRLRASQS 316 (1130)
Q Consensus 237 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (1130)
.+++-. .| +.+|.+.|+++.+.+. .|++ .+..+.+-.+.+
T Consensus 113 ~~cR~a--------------af-----s~DG~lvATGsaD~SI--Kild------------------vermlaks~~~e- 152 (430)
T KOG0640|consen 113 SPCRAA--------------AF-----SPDGSLVATGSADASI--KILD------------------VERMLAKSKPKE- 152 (430)
T ss_pred cceeee--------------ee-----CCCCcEEEccCCcceE--EEee------------------hhhhhhhcchhh-
Confidence 765433 33 6689999999998888 3443 333333222211
Q ss_pred cccccccCCCCCcccccCCcccceeeec-cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccc
Q 001184 317 VDEATYPVPSQQATWSLDDLPRAVACTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSN 395 (1130)
Q Consensus 317 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 395 (1130)
+ .... .+....+++++ .|.++|+++.|+|... +|++|+.|++|+++|+......+ .||++
T Consensus 153 ---m--------~~~~-~qa~hPvIRTlYDH~devn~l~FHPre~-ILiS~srD~tvKlFDfsK~saKr--A~K~~---- 213 (430)
T KOG0640|consen 153 ---M--------ISGD-TQARHPVIRTLYDHVDEVNDLDFHPRET-ILISGSRDNTVKLFDFSKTSAKR--AFKVF---- 213 (430)
T ss_pred ---h--------ccCC-cccCCceEeehhhccCcccceeecchhh-eEEeccCCCeEEEEecccHHHHH--HHHHh----
Confidence 0 0000 01123477776 5999999999999997 89999999999999997654332 33321
Q ss_pred cccceeeeeecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEc
Q 001184 396 CSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCG 475 (1130)
Q Consensus 396 ~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s 475 (1130)
.....|.++.|+|.|.+|++|..-.++++||+.+-+|......-.+|++.|+++.+++.|+ +.++++
T Consensus 214 -----------qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~--lYvTaS 280 (430)
T KOG0640|consen 214 -----------QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGS--LYVTAS 280 (430)
T ss_pred -----------hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCcc--EEEEec
Confidence 2345899999999999999999999999999999888765555678999999999999999 899999
Q ss_pred CCCcEEEEe-cCCCeeeEec-CCCc-CEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCc-----cEEEE
Q 001184 476 DDKLIRVWD-LSGRKLFQFE-GHEA-PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGL-----WCTTM 547 (1130)
Q Consensus 476 ~d~~v~iwd-~~~~~~~~~~-~h~~-~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-----~v~~~ 547 (1130)
.||.|+||| .+++|+.++. .|.+ .|.+..| ..+++++++.+.|..+++|.+.++..+..+.+.+. --+..
T Consensus 281 kDG~IklwDGVS~rCv~t~~~AH~gsevcSa~F--tkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqA 358 (430)
T KOG0640|consen 281 KDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVF--TKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQA 358 (430)
T ss_pred cCCcEEeeccccHHHHHHHHhhcCCceeeeEEE--ccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhh
Confidence 999999999 9999999886 4654 5777777 56779999999999999999999999988776532 12345
Q ss_pred EEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001184 548 LYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMD 618 (1130)
Q Consensus 548 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 618 (1130)
.|+-...+++.-- ...+.++-||.+++..+..+...+.+.+..+.-+|.+.-+++++.|..+++|--+
T Consensus 359 vFNhtEdyVl~pD---Eas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 359 VFNHTEDYVLFPD---EASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred hhcCccceEEccc---cccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 5676677776643 2367899999999888877766666699999999999999999999999999643
No 72
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=3e-28 Score=275.90 Aligned_cols=305 Identities=18% Similarity=0.272 Sum_probs=247.1
Q ss_pred CCCCEEEEEEecCCCeEEEEEe--CcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGC--GDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNF 423 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 423 (1130)
++..|.+++.+|||.. +|+|+ .||.++||+.+.=-. ..+.++.. .+...-.+..|.+.|+|+.|||||++
T Consensus 12 ~~~~IfSIdv~pdg~~-~aTgGq~~d~~~~iW~~~~vl~----~~~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~~ 83 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVK-FATGGQVLDGGIVIWSQDPVLD----EKEEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGSY 83 (942)
T ss_pred CCeeEEEEEecCCcee-EecCCccccccceeeccccccc----hhhhhhcc---cchhheeeccccCceeEEEECCCCCe
Confidence 5568999999999985 99999 899999999753110 00011111 22333357799999999999999999
Q ss_pred EEEEeCCCeEEEEEecC---C------------ccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCC
Q 001184 424 IGVAFTKHLIHLYTYQG---S------------NDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSG 487 (1130)
Q Consensus 424 las~~~d~~i~vwd~~~---~------------~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~ 487 (1130)
||+|++|+.|.||+... + +..+....+.+|...|.+++|+|++. ++++++.|++|.||| .+.
T Consensus 84 lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~tF 161 (942)
T KOG0973|consen 84 LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKTF 161 (942)
T ss_pred EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEccccc
Confidence 99999999999999873 0 11234457889999999999999999 899999999999999 888
Q ss_pred CeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCC------CccEEEEEEecCCCeEEEeee
Q 001184 488 RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP------GLWCTTMLYSADGSRLFSCGT 561 (1130)
Q Consensus 488 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~~~~~ 561 (1130)
+.+..+.+|.+.|..+.|.| -|+++++-+.|++|++|++...+....+..+ ...+..+.|+|||.+|++...
T Consensus 162 ~~~~vl~~H~s~VKGvs~DP--~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 162 ELLKVLRGHQSLVKGVSWDP--IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA 239 (942)
T ss_pred eeeeeeecccccccceEECC--ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence 99999999999999999965 5589999999999999997765444443332 225788999999999999876
Q ss_pred cCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCC-----CC------------EEEEEeCCCcEEEEeCCCCceeE
Q 001184 562 SKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTT-----RN------------RILAAGEDNQIKFWDMDNVNMLT 624 (1130)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~------------~l~~~~~dg~i~vwd~~~~~~~~ 624 (1130)
-..+...+.|.+..+.+.-..+.||+. ++.++.|+|. .+ .+++|+.|++|-||.....+++.
T Consensus 240 ~n~~~~~~~IieR~tWk~~~~LvGH~~-p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~ 318 (942)
T KOG0973|consen 240 VNGGKSTIAIIERGTWKVDKDLVGHSA-PVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF 318 (942)
T ss_pred ccCCcceeEEEecCCceeeeeeecCCC-ceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh
Confidence 566678899999888888899999888 8999999883 11 56779999999999998777765
Q ss_pred EEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 625 STEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 625 ~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
....-.. ..|..++|+|||..|++++.||+|.++.++..
T Consensus 319 vi~~lf~-~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 319 VIHNLFN-KSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred hhhhhhc-CceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 5443322 27999999999999999999999999998654
No 73
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=1.8e-27 Score=225.26 Aligned_cols=274 Identities=15% Similarity=0.209 Sum_probs=235.8
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcC-CCCE
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP-DGNF 423 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~ 423 (1130)
+|...|.+|+|+-+|.+ |++|+.|+++.+|+++.++.... ....+|.+.|-.++|+| ....
T Consensus 18 ~~~~~v~Sv~wn~~g~~-lasgs~dktv~v~n~e~~r~~~~-----------------~~~~gh~~svdql~w~~~~~d~ 79 (313)
T KOG1407|consen 18 GHVQKVHSVAWNCDGTK-LASGSFDKTVSVWNLERDRFRKE-----------------LVYRGHTDSVDQLCWDPKHPDL 79 (313)
T ss_pred hhhhcceEEEEcccCce-eeecccCCceEEEEecchhhhhh-----------------hcccCCCcchhhheeCCCCCcc
Confidence 58899999999999996 99999999999999998755432 14679999999999998 5679
Q ss_pred EEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEE
Q 001184 424 IGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYS 502 (1130)
Q Consensus 424 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~ 502 (1130)
+|+++.|.+|++||+..+++.... . ..+.=..+.|+|+|+ +++.++.|..|.+.| .+.+.+... .....+..
T Consensus 80 ~atas~dk~ir~wd~r~~k~~~~i---~-~~~eni~i~wsp~g~--~~~~~~kdD~it~id~r~~~~~~~~-~~~~e~ne 152 (313)
T KOG1407|consen 80 FATASGDKTIRIWDIRSGKCTARI---E-TKGENINITWSPDGE--YIAVGNKDDRITFIDARTYKIVNEE-QFKFEVNE 152 (313)
T ss_pred eEEecCCceEEEEEeccCcEEEEe---e-ccCcceEEEEcCCCC--EEEEecCcccEEEEEecccceeehh-cccceeee
Confidence 999999999999999999887643 2 233345689999999 799999999999999 555554444 35667888
Q ss_pred EeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEE
Q 001184 503 VCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRT 582 (1130)
Q Consensus 503 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1130)
++|+.+ +++++.....|+|.|-.+...+....+..|...+.|+.|+|+|+++|+|+. |..+.+||+..--+++.
T Consensus 153 ~~w~~~--nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsA----DAlvSLWD~~ELiC~R~ 226 (313)
T KOG1407|consen 153 ISWNNS--NDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSA----DALVSLWDVDELICERC 226 (313)
T ss_pred eeecCC--CCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccc----cceeeccChhHhhhhee
Confidence 888743 356666777899999999999999999999999999999999999999987 89999999999999999
Q ss_pred EecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCC
Q 001184 583 YIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTAD 653 (1130)
Q Consensus 583 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~d 653 (1130)
+..+.- +|+.+.|+.+|++|++|++|..|-|=++++|..+..++..+ +...++|+|...+||.+++|
T Consensus 227 isRldw-pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~---~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 227 ISRLDW-PVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEG---PTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred eccccC-ceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccC---CceeEEecCCCceeeEEecC
Confidence 987554 89999999999999999999999999999999999988665 57999999999999988765
No 74
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=2.5e-27 Score=224.90 Aligned_cols=286 Identities=12% Similarity=0.127 Sum_probs=237.1
Q ss_pred eccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCC
Q 001184 343 TMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN 422 (1130)
Q Consensus 343 ~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~ 422 (1130)
..+|+.+++.+.|..+|. ||++++.|.++.||=..+|+.+. ++.||.++|.|+..+-+.+
T Consensus 6 l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlG-------------------ty~GHtGavW~~Did~~s~ 65 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLG-------------------TYDGHTGAVWCCDIDWDSK 65 (327)
T ss_pred cccCccccceEEecCCCc-EEEEecCCCCceEEEecCCceee-------------------eecCCCceEEEEEecCCcc
Confidence 457999999999999998 79999999999999999999887 5889999999999999999
Q ss_pred EEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEc-----CCCcEEEEe-c-------CCCe
Q 001184 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCG-----DDKLIRVWD-L-------SGRK 489 (1130)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s-----~d~~v~iwd-~-------~~~~ 489 (1130)
++++|+.|.++++||+++|+++.. + .-..+|..+.|+++|.. ++.+. .-+.|.++| . ...+
T Consensus 66 ~liTGSAD~t~kLWDv~tGk~la~---~-k~~~~Vk~~~F~~~gn~--~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep 139 (327)
T KOG0643|consen 66 HLITGSADQTAKLWDVETGKQLAT---W-KTNSPVKRVDFSFGGNL--ILASTDKQMGYTCFVSVFDIRDDSSDIDSEEP 139 (327)
T ss_pred eeeeccccceeEEEEcCCCcEEEE---e-ecCCeeEEEeeccCCcE--EEEEehhhcCcceEEEEEEccCChhhhcccCc
Confidence 999999999999999999997763 3 24668999999999993 44332 346789998 3 3455
Q ss_pred eeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCccee-eecCCCccEEEEEEecCCCeEEEeeecCCCCcE
Q 001184 490 LFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV-DYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSH 568 (1130)
Q Consensus 490 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 568 (1130)
...+..+...++.+.|.+.. +.|++|..||.|.+||++++.... .-..|...|+.+.+++|..++++++. |.+
T Consensus 140 ~~kI~t~~skit~a~Wg~l~--~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~----Dtt 213 (327)
T KOG0643|consen 140 YLKIPTPDSKITSALWGPLG--ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSK----DTT 213 (327)
T ss_pred eEEecCCccceeeeeecccC--CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEeccc----Ccc
Confidence 77888888999999997655 799999999999999999976655 44678889999999999999999987 888
Q ss_pred EEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCc--EEEEeCCCC------------ceeEEEeccCCCCC
Q 001184 569 LVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQ--IKFWDMDNV------------NMLTSTEAEGGLPS 634 (1130)
Q Consensus 569 i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~--i~vwd~~~~------------~~~~~~~~~~~~~~ 634 (1130)
-.+||..+-.+++++.. ..++++.+++|-..+++.|+.... |.-=+.+.| +.+..+++ |.++
T Consensus 214 akl~D~~tl~v~Kty~t--e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkG--HFGP 289 (327)
T KOG0643|consen 214 AKLVDVRTLEVLKTYTT--ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKG--HFGP 289 (327)
T ss_pred ceeeeccceeeEEEeee--cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccc--cccC
Confidence 99999999999999985 448999999999888888764322 222222223 23444444 4559
Q ss_pred cceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 635 LPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 635 i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
|++++|+|+|+..++|+.||.|++...+..
T Consensus 290 INsvAfhPdGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 290 INSVAFHPDGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred cceeEECCCCcccccCCCCceEEEEEeccc
Confidence 999999999999999999999999876543
No 75
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=2.6e-27 Score=236.06 Aligned_cols=285 Identities=20% Similarity=0.339 Sum_probs=239.7
Q ss_pred cCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEecCCCcCEEEEeecccC-CccEEEEEecCCcEEEEEccC
Q 001184 452 AHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKE-NIHFIFSTAVDGKIKAWLYDN 530 (1130)
Q Consensus 452 ~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~l~s~s~dg~i~vwd~~~ 530 (1130)
-|.+.|.++... ++ .|+||+.||.+++||..|+.+..+.||.++|.++++.... ....+++++.|.++++|.++.
T Consensus 103 ~hdDWVSsv~~~--~~--~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~ 178 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SK--WILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV 178 (423)
T ss_pred cchhhhhhhccc--Cc--eEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence 488899999888 55 7999999999999999999999999999999988876433 335799999999999999887
Q ss_pred Cccee----eecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCC-------------------------CCceeE
Q 001184 531 VGSRV----DYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES-------------------------EGALKR 581 (1130)
Q Consensus 531 ~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-------------------------~~~~~~ 581 (1130)
+.... ...+|...|.++...++|.++++++. |..|.+|+.. ++.++-
T Consensus 179 ~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~----D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~v 254 (423)
T KOG0313|consen 179 GENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSW----DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLV 254 (423)
T ss_pred chhhhhHHhHhcccccceeEEEecCCCCeEEeecc----cceeeecccCCCccccccccchhhhhhhhhhhcccccCceE
Confidence 66543 33488889999999999999999998 8999999922 123455
Q ss_pred EEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001184 582 TYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1130)
Q Consensus 582 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~ 661 (1130)
++.||.+ .|..+.|++ ...+++++.|.+|+.||+.++..+..+.... .++++.++|...+|++|+.|..+++||.
T Consensus 255 tl~GHt~-~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~k---sl~~i~~~~~~~Ll~~gssdr~irl~DP 329 (423)
T KOG0313|consen 255 TLEGHTE-PVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK---SLNCISYSPLSKLLASGSSDRHIRLWDP 329 (423)
T ss_pred Eeccccc-ceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCc---ceeEeecccccceeeecCCCCceeecCC
Confidence 6788777 899999987 6789999999999999999999988876543 6899999999999999999999999996
Q ss_pred CCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCc
Q 001184 662 ADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKT 741 (1130)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 741 (1130)
+++. +
T Consensus 330 R~~~-------------------------------------------------------------------------g-- 334 (423)
T KOG0313|consen 330 RTGD-------------------------------------------------------------------------G-- 334 (423)
T ss_pred CCCC-------------------------------------------------------------------------C--
Confidence 5540 0
Q ss_pred cceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCC
Q 001184 742 KPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNG 821 (1130)
Q Consensus 742 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~ 821 (1130)
.
T Consensus 335 ------------------------------------------------s------------------------------- 335 (423)
T KOG0313|consen 335 ------------------------------------------------S------------------------------- 335 (423)
T ss_pred ------------------------------------------------c-------------------------------
Confidence 0
Q ss_pred cceeccCCCCCCCceeEEEEecCCCEEEEEeCCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEE
Q 001184 822 LLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQI 901 (1130)
Q Consensus 822 ~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~i 901 (1130)
-...++.+|...|.++.|+|.+..+|++|+.|+++++
T Consensus 336 -------------------------------------------~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~kl 372 (423)
T KOG0313|consen 336 -------------------------------------------VVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKL 372 (423)
T ss_pred -------------------------------------------eeEEeeecchhhhhheecCCCCceEEEEEecCCeEEE
Confidence 0112344577777888888877789999999999999
Q ss_pred EEeecCe-EEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECC
Q 001184 902 YNVRVDE-VKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTD 947 (1130)
Q Consensus 902 wd~~~~~-~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~ 947 (1130)
||+++.+ ++..+.+|.+.|.++.|+ ++..+++||.|.+|+++.-.
T Consensus 373 WDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 373 WDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred EEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 9999877 899999999999999998 56799999999999998654
No 76
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=6e-27 Score=258.88 Aligned_cols=295 Identities=18% Similarity=0.202 Sum_probs=215.7
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccce----eeeccccccceeeeeecCCCccEEEEEEcC-
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFK----IWDMSNCSMMLQAAIVKDSSISVSRVAWSP- 419 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp- 419 (1130)
.|.+.|+++.||+||+| ||+|+.||.|+||.+...+......-. ...+...+ .+..+.-++
T Consensus 265 ah~gaIw~mKFS~DGKy-LAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s-------------~~~p~~s~~~ 330 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKY-LASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANS-------------QIEPSTSSEE 330 (712)
T ss_pred ccCCcEEEEEeCCCCce-eeecCCCceEEEEEEeccchhcccccccchhhhhhhhcc-------------ccCccccccc
Confidence 49999999999999995 999999999999999764432110000 00000000 011111111
Q ss_pred --CCC--EEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEec
Q 001184 420 --DGN--FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFE 494 (1130)
Q Consensus 420 --dg~--~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~ 494 (1130)
.++ ..-.+.....+.+-+..-.-.-++...+.||.+.|.+++||.++ +|++++.|++||+|+ ....|++.|.
T Consensus 331 ~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~---fLLSSSMDKTVRLWh~~~~~CL~~F~ 407 (712)
T KOG0283|consen 331 KISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN---FLLSSSMDKTVRLWHPGRKECLKVFS 407 (712)
T ss_pred cccccccccccccCCccccCCCccccccccchhhhhccchhheecccccCC---eeEeccccccEEeecCCCcceeeEEe
Confidence 011 11112222222221111111123344689999999999999876 699999999999999 8888999997
Q ss_pred CCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeC
Q 001184 495 GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNE 574 (1130)
Q Consensus 495 ~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1130)
|...|+|++|+|.+| +++++|+.||.||||++...+...-.. -..-|++++|.|||++.++|+. +|..++|+.
T Consensus 408 -HndfVTcVaFnPvDD-ryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~----~G~C~fY~t 480 (712)
T KOG0283|consen 408 -HNDFVTCVAFNPVDD-RYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTF----NGYCRFYDT 480 (712)
T ss_pred -cCCeeEEEEecccCC-CcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEe----ccEEEEEEc
Confidence 999999999999766 899999999999999997655444333 3367999999999999999998 999999999
Q ss_pred CCCceeEEEecc-------cCceeEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCE
Q 001184 575 SEGALKRTYIGF-------RKKSAGVVQFDTTR-NRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNL 646 (1130)
Q Consensus 575 ~~~~~~~~~~~~-------~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~ 646 (1130)
...+....+.-+ ....|+.+.|.|.. ..+++.+.|..|||+|.+...++..+++......-....|+.||++
T Consensus 481 ~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~ 560 (712)
T KOG0283|consen 481 EGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKH 560 (712)
T ss_pred cCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCE
Confidence 887776544321 12268889888754 3688899999999999999888888887665555567899999999
Q ss_pred EEEEeCCCcEEEEEcCC
Q 001184 647 LVVTTADQGIKILANAD 663 (1130)
Q Consensus 647 l~~~~~dg~i~iw~~~~ 663 (1130)
|+++++|..|++|+...
T Consensus 561 IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 561 IVSASEDSWVYIWKNDS 577 (712)
T ss_pred EEEeecCceEEEEeCCC
Confidence 99999999999999744
No 77
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=5.4e-28 Score=226.74 Aligned_cols=290 Identities=18% Similarity=0.286 Sum_probs=247.1
Q ss_pred eeeecCCCccEEEEEEec---CCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCC
Q 001184 534 RVDYDAPGLWCTTMLYSA---DGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDN 610 (1130)
Q Consensus 534 ~~~~~~~~~~v~~~~~s~---~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 610 (1130)
.....+|..+|..++|+| +|-+|++++. |+.-.+-+-.+|.-+.+|.+|.+ .|...++..+..+.++++.|-
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g~flisa~k----d~~pmlr~g~tgdwigtfeghkg-avw~~~l~~na~~aasaaadf 81 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDGYFLISASK----DGKPMLRNGDTGDWIGTFEGHKG-AVWSATLNKNATRAASAAADF 81 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCceEEEEecc----CCCchhccCCCCCcEEeeeccCc-ceeeeecCchhhhhhhhcccc
Confidence 345567888999999985 8888888876 77777788889999999999877 788888888888889999999
Q ss_pred cEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhccccccccccccccccccc
Q 001184 611 QIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGS 690 (1130)
Q Consensus 611 ~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (1130)
+-++||.-+|..+..+.. .+ -|.+++|+.|.++|++|+.+..+||||++........+
T Consensus 82 takvw~a~tgdelhsf~h-kh--ivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~------------------- 139 (334)
T KOG0278|consen 82 TAKVWDAVTGDELHSFEH-KH--IVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEI------------------- 139 (334)
T ss_pred hhhhhhhhhhhhhhhhhh-hh--eeeeEEecccchhhhccchHHHhhhhhccCCCCCchhh-------------------
Confidence 999999999999888864 33 68999999999999999999999999987653322222
Q ss_pred ceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccce
Q 001184 691 AVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKV 770 (1130)
Q Consensus 691 ~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i 770 (1130)
.+|.+.|
T Consensus 140 -------------------------------------------------------------------------~ghtg~I 146 (334)
T KOG0278|consen 140 -------------------------------------------------------------------------SGHTGGI 146 (334)
T ss_pred -------------------------------------------------------------------------cCCCCcc
Confidence 2377888
Q ss_pred EEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEE
Q 001184 771 ARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMS 850 (1130)
Q Consensus 771 ~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~ 850 (1130)
..+.|....+.+++...|++|++||..+ |..+... ....+|+++.+++||++|.+
T Consensus 147 r~v~wc~eD~~iLSSadd~tVRLWD~rT----------------------gt~v~sL---~~~s~VtSlEvs~dG~ilTi 201 (334)
T KOG0278|consen 147 RTVLWCHEDKCILSSADDKTVRLWDHRT----------------------GTEVQSL---EFNSPVTSLEVSQDGRILTI 201 (334)
T ss_pred eeEEEeccCceEEeeccCCceEEEEecc----------------------CcEEEEE---ecCCCCcceeeccCCCEEEE
Confidence 8899999999999999999999987543 3322211 24678999999999999999
Q ss_pred EeCCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEE-ecCCCCeeEEEEccCC
Q 001184 851 AGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKL-KGHQKHITGLAFSTNL 929 (1130)
Q Consensus 851 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l-~~h~~~V~~l~~s~dg 929 (1130)
+..+.|.+||..+...++.++. ...|.+...+| +..+++.|++|..++.||..+++.+..+ ++|.++|.|+.|+|||
T Consensus 202 a~gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P-~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdG 279 (334)
T KOG0278|consen 202 AYGSSVKFWDAKSFGLLKSYKM-PCNVESASLHP-KKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDG 279 (334)
T ss_pred ecCceeEEeccccccceeeccC-ccccccccccC-CCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCC
Confidence 9999999999999999998875 45699999999 7789999999999999999999999886 9999999999999999
Q ss_pred CeEEEEeCCCcEEEEECCCCc
Q 001184 930 NILVSSGSDAQLIFWNTDTWE 950 (1130)
Q Consensus 930 ~~L~s~s~Dg~i~vwd~~~~~ 950 (1130)
...++|+.||+|++|....++
T Consensus 280 E~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 280 ELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred ceeeccCCCceEEEEEecCCC
Confidence 999999999999999987654
No 78
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.1e-26 Score=224.63 Aligned_cols=273 Identities=18% Similarity=0.269 Sum_probs=221.9
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCC-CceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGL-RERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 424 (1130)
-.+.|.+++|||....+++.||-||+||+|+++. |.... +....|.++|.+++|+.||..+
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~------------------ka~~~~~~PvL~v~WsddgskV 87 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP------------------KAQQSHDGPVLDVCWSDDGSKV 87 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccc------------------hhhhccCCCeEEEEEccCCceE
Confidence 3579999999996666888999999999999987 34332 1356899999999999999999
Q ss_pred EEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEE
Q 001184 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSV 503 (1130)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~ 503 (1130)
++|+.|+.+++||+.+++.. .+..|.++|..+.|-+...+..|+|||.|++|++|| ....++.++. -..++.++
T Consensus 88 f~g~~Dk~~k~wDL~S~Q~~----~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~ 162 (347)
T KOG0647|consen 88 FSGGCDKQAKLWDLASGQVS----QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAA 162 (347)
T ss_pred EeeccCCceEEEEccCCCee----eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeeh
Confidence 99999999999999998543 467899999999999876655899999999999999 7777777776 45677777
Q ss_pred eecccCCccEEEEEecCCcEEEEEccCCcceeeecC--CCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCC--ce
Q 001184 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA--PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG--AL 579 (1130)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~--~~ 579 (1130)
..- ..+++.+..++.|.+|++++......... -...+++++..+|....+.|+. +|.+.+..+..+ +.
T Consensus 163 Dv~----~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsi----EGrv~iq~id~~~~~~ 234 (347)
T KOG0647|consen 163 DVL----YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSI----EGRVAIQYIDDPNPKD 234 (347)
T ss_pred hcc----CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeee----cceEEEEecCCCCccC
Confidence 542 25788999999999999987655543221 2336889999999888888887 888888877665 44
Q ss_pred eEEEecccC--------ceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEe
Q 001184 580 KRTYIGFRK--------KSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTT 651 (1130)
Q Consensus 580 ~~~~~~~~~--------~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~ 651 (1130)
-.+|+.|+. -.|+.++|+|.-..|+++|.||++.+||-+....+...+.+.. +|+++.|+.+|.++|-+.
T Consensus 235 nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~q--pItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 235 NFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQ--PITCCSFNRNGSIFAYAL 312 (347)
T ss_pred ceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCC--ccceeEecCCCCEEEEEe
Confidence 556777663 1466799999999999999999999999988877777665544 899999999999988663
No 79
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=1e-26 Score=262.76 Aligned_cols=278 Identities=18% Similarity=0.296 Sum_probs=245.2
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEE
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 424 (1130)
.+...+.+..|. ++ .+++|+.|.+|++||..++..+.. -+.||.+.|.++++..-+.+|
T Consensus 206 ~~~~~~~~~q~~-~~--~~~~~s~~~tl~~~~~~~~~~i~~------------------~l~GH~g~V~~l~~~~~~~~l 264 (537)
T KOG0274|consen 206 TDDHVVLCLQLH-DG--FFKSGSDDSTLHLWDLNNGYLILT------------------RLVGHFGGVWGLAFPSGGDKL 264 (537)
T ss_pred cCcchhhhheee-cC--eEEecCCCceeEEeecccceEEEe------------------eccCCCCCceeEEEecCCCEE
Confidence 467899999999 44 389999999999999999988762 278999999999999888899
Q ss_pred EEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEE
Q 001184 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSV 503 (1130)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~ 503 (1130)
++|+.|.++++||+.+|+|.. .+.+|...|.++...+. .+++|+.|.+|++|+ .++.++..+.+|.++|.++
T Consensus 265 vsgS~D~t~rvWd~~sg~C~~---~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v 337 (537)
T KOG0274|consen 265 VSGSTDKTERVWDCSTGECTH---SLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCV 337 (537)
T ss_pred EEEecCCcEEeEecCCCcEEE---EecCCCceEEEEEccCc----eEeeccCCceEEEEeccCcceEEEeccccccEEEE
Confidence 999999999999999999876 78899999999988653 689999999999999 7799999999999999999
Q ss_pred eecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCC-ceeEE
Q 001184 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG-ALKRT 582 (1130)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~ 582 (1130)
..+ +.++++|+.|++|++||+.+.+....+.+|...|.++.+.+. ..+++++. |+.|++||+.+. +++.+
T Consensus 338 ~~~----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~----D~~IkvWdl~~~~~c~~t 408 (537)
T KOG0274|consen 338 QLD----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSL----DTTIKVWDLRTKRKCIHT 408 (537)
T ss_pred Eec----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeee----ccceEeecCCchhhhhhh
Confidence 874 479999999999999999999999999999999999988776 88999987 899999999999 99999
Q ss_pred EecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcC
Q 001184 583 YIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANA 662 (1130)
Q Consensus 583 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~ 662 (1130)
+.+|.. .+..+. ..++++++++.|++|++||..+++++..+... +...|..+++. ...+++++.||.+.+||+.
T Consensus 409 l~~h~~-~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~ 482 (537)
T KOG0274|consen 409 LQGHTS-LVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALG--KEEILCSSDDGSVKLWDLR 482 (537)
T ss_pred hcCCcc-cccccc--cccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecC--cceEEEEecCCeeEEEecc
Confidence 998766 454443 35789999999999999999999999999875 33467777765 4678999999999999999
Q ss_pred CCc
Q 001184 663 DGL 665 (1130)
Q Consensus 663 ~~~ 665 (1130)
++.
T Consensus 483 ~~~ 485 (537)
T KOG0274|consen 483 SGT 485 (537)
T ss_pred cCc
Confidence 984
No 80
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=6.1e-26 Score=257.00 Aligned_cols=287 Identities=13% Similarity=0.101 Sum_probs=222.6
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcC-CCCEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP-DGNFI 424 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l 424 (1130)
|-..|....+++|+.. +++++.+..+..|+...+..+. +.............+.+|.+.|.+++|+| |+++|
T Consensus 19 ~~~~i~~~~~~~d~~~-~~~~n~~~~a~~w~~~gg~~v~------~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~L 91 (493)
T PTZ00421 19 HFLNVTPSTALWDCSN-TIACNDRFIAVPWQQLGSTAVL------KHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKL 91 (493)
T ss_pred ceeccccccccCCCCC-cEeECCceEEEEEecCCceEEe------eccccccCCCCCceEeCCCCCEEEEEEcCCCCCEE
Confidence 4456777788888764 6777888888899887654331 11111111111235789999999999999 89999
Q ss_pred EEEeCCCeEEEEEecCCcc----ceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcC
Q 001184 425 GVAFTKHLIHLYTYQGSND----LCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAP 499 (1130)
Q Consensus 425 as~~~d~~i~vwd~~~~~~----~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~ 499 (1130)
|+|+.|++|++||+.++.. ......+.+|...|.+++|+|++.. +|++++.|++|+||| .+++.+..+.+|...
T Consensus 92 aSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~ 170 (493)
T PTZ00421 92 FTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQ 170 (493)
T ss_pred EEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECCCCeEEEEEcCCCCc
Confidence 9999999999999976532 1233468899999999999998644 799999999999999 788888999999999
Q ss_pred EEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCcc-EEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCc
Q 001184 500 VYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLW-CTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA 578 (1130)
Q Consensus 500 v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1130)
|.+++|++ ++.+|++++.|++|++||++++.....+..|... +..+.|.+++..+++++.+...++.|++||+++..
T Consensus 171 V~sla~sp--dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 171 ITSLEWNL--DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred eEEEEEEC--CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence 99999976 5689999999999999999998887777777653 45678999988998887655568999999998754
Q ss_pred -eeEEEecccCceeEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCC
Q 001184 579 -LKRTYIGFRKKSAGVVQFDTTRNRILAAG-EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKE 643 (1130)
Q Consensus 579 -~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~ 643 (1130)
.......+....+....|+++++++++++ .|+.|++||+.+++.+...... ...++..++|.|.
T Consensus 249 ~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~-s~~~~~g~~~~pk 314 (493)
T PTZ00421 249 SPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYS-SVEPHKGLCMMPK 314 (493)
T ss_pred CceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeecc-CCCCCcceEeccc
Confidence 33333333333566678999999999887 5999999999999887765543 2336788888884
No 81
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=1.2e-26 Score=263.01 Aligned_cols=304 Identities=18% Similarity=0.267 Sum_probs=244.8
Q ss_pred CccceEEEEEeccCCeEEEee--eCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEec
Q 001184 766 SASKVARLLYTNSGIGILALW--SNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSK 843 (1130)
Q Consensus 766 ~~~~i~~l~~s~~g~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~ 843 (1130)
+...|.++..+|+|..++++| .|+.+++|+...-... ...++..-...+. ....|.+.|.|+.|++
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~----------~~~~~~~l~k~l~--~m~~h~~sv~CVR~S~ 79 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDE----------KEEKNENLPKHLC--TMDDHDGSVNCVRFSP 79 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccch----------hhhhhcccchhhe--eeccccCceeEEEECC
Confidence 455689999999999999999 7999999986542110 1112221011111 1126899999999999
Q ss_pred CCCEEEEEe-CCeEEEEECCC------------------ceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEe
Q 001184 844 NDSYVMSAG-GGKVSLFNMMN------------------FKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNV 904 (1130)
Q Consensus 844 dg~~la~~~-dg~i~iwd~~~------------------~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~ 904 (1130)
||++||+|+ |+.|.||.... .+++..+.+|...|..++|+| ++.+||+++.|++|.||+.
T Consensus 80 dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~ 158 (942)
T KOG0973|consen 80 DGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNA 158 (942)
T ss_pred CCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEcc
Confidence 999999999 57799998762 246788899999999999999 8999999999999999999
Q ss_pred ecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE-
Q 001184 905 RVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN- 983 (1130)
Q Consensus 905 ~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~- 983 (1130)
.+.+.+.++++|.+.|..+.|.|-|++|||-+.|++|+||++..+...+...-..........+..+.|||||.+|++.
T Consensus 159 ~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~n 238 (942)
T KOG0973|consen 159 KTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPN 238 (942)
T ss_pred ccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchh
Confidence 9999999999999999999999999999999999999999988877666555444444444678899999999999983
Q ss_pred ----cCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECC-----CCC------------EEEEEeCCCcEEEEeCCCcc
Q 001184 984 ----HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSC-----NSQ------------LIYATFTDGSIGVFDADSLR 1042 (1130)
Q Consensus 984 ----~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~-----dg~------------~l~t~~~Dg~i~vwd~~~~~ 1042 (1130)
.-..+.|.+-.+.+.-..+.+| .+++.++.|+| ..+ .+|+|+.|++|.||.....+
T Consensus 239 A~n~~~~~~~IieR~tWk~~~~LvGH---~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~R 315 (942)
T KOG0973|consen 239 AVNGGKSTIAIIERGTWKVDKDLVGH---SAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPR 315 (942)
T ss_pred hccCCcceeEEEecCCceeeeeeecC---CCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCC
Confidence 2456889988888887888887 67999999998 111 68889999999999987666
Q ss_pred cccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCc
Q 001184 1043 LRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETE 1096 (1130)
Q Consensus 1043 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~~~~ 1096 (1130)
.+..+.. =....+++++|+| ||..|.++|.||+|.+..+++.+
T Consensus 316 Pl~vi~~----------lf~~SI~DmsWsp-dG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 316 PLFVIHN----------LFNKSIVDMSWSP-DGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred chhhhhh----------hhcCceeeeeEcC-CCCeEEEEecCCeEEEEEcchHH
Confidence 5544421 1223467899999 58999999999999999998765
No 82
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.95 E-value=5.3e-26 Score=215.93 Aligned_cols=235 Identities=13% Similarity=0.229 Sum_probs=201.8
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iw 483 (1130)
.+.||+.+++.+.++.+|.+|.+|+.|.+..||-...|+.+. ++.||.+.|+++....+.+ .++||+.|.++++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~--~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSK--HLITGSADQTAKLW 79 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcc--eeeeccccceeEEE
Confidence 578999999999999999999999999999999998888666 7899999999999999999 89999999999999
Q ss_pred e-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEec-----CCcEEEEEcc-------CCcceeeecCCCccEEEEEEe
Q 001184 484 D-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAV-----DGKIKAWLYD-------NVGSRVDYDAPGLWCTTMLYS 550 (1130)
Q Consensus 484 d-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-----dg~i~vwd~~-------~~~~~~~~~~~~~~v~~~~~s 550 (1130)
| .+|+++..++ ...+|..+.|++.+ ++++...+ .+.|.++|++ ..++...+..+...++.+.|.
T Consensus 80 Dv~tGk~la~~k-~~~~Vk~~~F~~~g--n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg 156 (327)
T KOG0643|consen 80 DVETGKQLATWK-TNSPVKRVDFSFGG--NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG 156 (327)
T ss_pred EcCCCcEEEEee-cCCeeEEEeeccCC--cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence 9 9999999987 67889999997644 55555433 3678999988 344566777788899999999
Q ss_pred cCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccC
Q 001184 551 ADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEG 630 (1130)
Q Consensus 551 ~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 630 (1130)
|-+.+|++|.. +|.|..||.++|+....-...+...|+.++++++..++++++.|.+-++||..+.+.++++....
T Consensus 157 ~l~~~ii~Ghe----~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~ 232 (327)
T KOG0643|consen 157 PLGETIIAGHE----DGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTER 232 (327)
T ss_pred ccCCEEEEecC----CCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecc
Confidence 99999999976 99999999999865444333344489999999999999999999999999999999999887654
Q ss_pred CCCCcceEEEcCCCCEEEEEeCC
Q 001184 631 GLPSLPRLRFNKEGNLLVVTTAD 653 (1130)
Q Consensus 631 ~~~~i~~v~~s~~~~~l~~~~~d 653 (1130)
++++.+++|....++.|+..
T Consensus 233 ---PvN~aaisP~~d~VilgGGq 252 (327)
T KOG0643|consen 233 ---PVNTAAISPLLDHVILGGGQ 252 (327)
T ss_pred ---cccceecccccceEEecCCc
Confidence 79999999977777777544
No 83
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=1.1e-26 Score=224.49 Aligned_cols=311 Identities=15% Similarity=0.204 Sum_probs=241.4
Q ss_pred CcccceeeeccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccc----cccceeeeeecCCCc
Q 001184 335 DLPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSN----CSMMLQAAIVKDSSI 410 (1130)
Q Consensus 335 ~~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~h~~ 410 (1130)
....+-.....|+..+.+.+|||||. ++|+|+.|.+|+|.|++.--... +.-++.. ...++.. ++-.|..
T Consensus 100 ~~~yEt~ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks----~~~em~~~~~qa~hPvIR-TlYDH~d 173 (430)
T KOG0640|consen 100 PSEYETKYLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKS----KPKEMISGDTQARHPVIR-TLYDHVD 173 (430)
T ss_pred CcccceEEEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhc----chhhhccCCcccCCceEe-ehhhccC
Confidence 33445555567999999999999998 79999999999999997211000 0001111 1122222 4778999
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCe
Q 001184 411 SVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRK 489 (1130)
Q Consensus 411 ~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~ 489 (1130)
.|+++.|+|....|++|+.|++|+++|.......+..+.+ ....+|.++.|.|.|. +++.|....++++|| .+-++
T Consensus 174 evn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~Qc 250 (430)
T KOG0640|consen 174 EVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTYQC 250 (430)
T ss_pred cccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCc--eEEEecCCCceeEEeccceeE
Confidence 9999999999999999999999999999764433322222 3456899999999999 899999999999999 66665
Q ss_pred eeEe---cCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecC-C-CccEEEEEEecCCCeEEEeeecCC
Q 001184 490 LFQF---EGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA-P-GLWCTTMLYSADGSRLFSCGTSKE 564 (1130)
Q Consensus 490 ~~~~---~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-~-~~~v~~~~~s~~~~~l~~~~~~~~ 564 (1130)
...- .+|++.|+++.++ +.+.+.++++.||.|++||--+.+++.++.. | +..|.+..|..+|+++++.|.
T Consensus 251 fvsanPd~qht~ai~~V~Ys--~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~--- 325 (430)
T KOG0640|consen 251 FVSANPDDQHTGAITQVRYS--STGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK--- 325 (430)
T ss_pred eeecCcccccccceeEEEec--CCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC---
Confidence 5432 4799999999885 4558999999999999999888887775542 3 347999999999999999987
Q ss_pred CCcEEEEeeCCCCceeEEEecccCc----eeEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCceeEEEeccCCCCCcceEE
Q 001184 565 GDSHLVEWNESEGALKRTYIGFRKK----SAGVVQFDTTRNRILAAG-EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLR 639 (1130)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~ 639 (1130)
|..+++|.+.+++.+..+.|.... --+...|+....+++.-. ..+.+.-||.+++..+..+.. +|.+.+..+.
T Consensus 326 -DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl-gHn~a~R~i~ 403 (430)
T KOG0640|consen 326 -DSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL-GHNGAVRWIV 403 (430)
T ss_pred -cceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc-CCCCCceEEE
Confidence 899999999999999999875211 112245777777777754 357899999999887766554 5566899999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEc
Q 001184 640 FNKEGNLLVVTTADQGIKILAN 661 (1130)
Q Consensus 640 ~s~~~~~l~~~~~dg~i~iw~~ 661 (1130)
.||.+.-+.+++.|...|+|--
T Consensus 404 HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 404 HSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred eCCCCCceeeecccceeeeeee
Confidence 9999999999999999999963
No 84
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=9.3e-27 Score=219.46 Aligned_cols=283 Identities=17% Similarity=0.256 Sum_probs=224.0
Q ss_pred EEEEEecC--CCeEEEEE-----eCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCC-CC
Q 001184 351 VSMDFHPF--HHTLLVVG-----CGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD-GN 422 (1130)
Q Consensus 351 ~~v~fspd--g~~llasg-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd-g~ 422 (1130)
.++.|||- ++..+|++ ...|.+.|-++..++-+. .+.-+ .-...+..++||++ ..
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~--e~~s~---------------d~~D~LfdV~Wse~~e~ 74 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQ--ECQSY---------------DTEDGLFDVAWSENHEN 74 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeE--EEEee---------------ecccceeEeeecCCCcc
Confidence 56788884 44223333 135789999987444332 12212 22457999999996 45
Q ss_pred EEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEE
Q 001184 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVY 501 (1130)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~ 501 (1130)
.+++++.||++++||+.-. -.+...++.|...|.++.|++-.++ .++++|.|++|++|+ ..++.+.+|.||...|.
T Consensus 75 ~~~~a~GDGSLrl~d~~~~--s~Pi~~~kEH~~EV~Svdwn~~~r~-~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy 151 (311)
T KOG0277|consen 75 QVIAASGDGSLRLFDLTMP--SKPIHKFKEHKREVYSVDWNTVRRR-IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIY 151 (311)
T ss_pred eEEEEecCceEEEeccCCC--CcchhHHHhhhhheEEeccccccce-eEEeeccCCceEeecCCCCcceEeecCCccEEE
Confidence 7888899999999995432 3455578899999999999997776 678889999999999 88899999999999999
Q ss_pred EEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCC-eEEEeeecCCCCcEEEEeeCCCC-ce
Q 001184 502 SVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGS-RLFSCGTSKEGDSHLVEWNESEG-AL 579 (1130)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~~~~i~~wd~~~~-~~ 579 (1130)
...|+|.. .++++++|.|+++++||++.......+..|...+.++.|+.-.. .+++++. |+.|+.||++.- .+
T Consensus 152 ~a~~sp~~-~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~v----d~~vr~wDir~~r~p 226 (311)
T KOG0277|consen 152 QAAFSPHI-PNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGV----DNLVRGWDIRNLRTP 226 (311)
T ss_pred EEecCCCC-CCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCC----CceEEEEehhhcccc
Confidence 99999864 47999999999999999999988888999999999999998555 5556554 999999999874 45
Q ss_pred eEEEecccCceeEEEEEcCCC-CEEEEEeCCCcEEEEeCCCC-ceeEEEeccCCCCCcceEEEcC-CCCEEEEEeCCCcE
Q 001184 580 KRTYIGFRKKSAGVVQFDTTR-NRILAAGEDNQIKFWDMDNV-NMLTSTEAEGGLPSLPRLRFNK-EGNLLVVTTADQGI 656 (1130)
Q Consensus 580 ~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~i~~v~~s~-~~~~l~~~~~dg~i 656 (1130)
+..+.+|.- .|+.+.|+|.. ..|++++.|-+++|||...+ ..+.+...|.. -+..+.|++ ++.++|+.+-|+.+
T Consensus 227 l~eL~gh~~-AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtE--Fv~g~Dws~~~~~~vAs~gWDe~l 303 (311)
T KOG0277|consen 227 LFELNGHGL-AVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTE--FVCGLDWSLFDPGQVASTGWDELL 303 (311)
T ss_pred ceeecCCce-EEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccce--EEeccccccccCceeeecccccce
Confidence 677777654 89999999976 47889999999999999844 34444554443 577888887 67899999999999
Q ss_pred EEEEc
Q 001184 657 KILAN 661 (1130)
Q Consensus 657 ~iw~~ 661 (1130)
.||+.
T Consensus 304 ~Vw~p 308 (311)
T KOG0277|consen 304 YVWNP 308 (311)
T ss_pred eeecc
Confidence 99983
No 85
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.3e-26 Score=250.35 Aligned_cols=302 Identities=19% Similarity=0.320 Sum_probs=247.6
Q ss_pred CCCCCCCCccccCCCCChHHHHHhhccc----CCcccccccCCCCCcccccCCcccceeeeccCCCCEEEEEEecCCCeE
Q 001184 287 PRAPSNTLGMIDYPSSDHEQLKKRLRAS----QSVDEATYPVPSQQATWSLDDLPRAVACTMHQGSSVVSMDFHPFHHTL 362 (1130)
Q Consensus 287 p~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~l 362 (1130)
|+.+.......++..+|.+.+...+... ...+.+++.-+..++.|+........+..++ .+.|+++.|+++|+ .
T Consensus 154 ~r~~~r~~~~~p~rvLDaP~l~dDfY~nlldWss~n~laValg~~vylW~~~s~~v~~l~~~~-~~~vtSv~ws~~G~-~ 231 (484)
T KOG0305|consen 154 PRKLKRKIPQTPYRVLDAPGLQDDFYLNLLDWSSANVLAVALGQSVYLWSASSGSVTELCSFG-EELVTSVKWSPDGS-H 231 (484)
T ss_pred cccccCcccCChhhhccCCcccccHhhhHhhcccCCeEEEEecceEEEEecCCCceEEeEecC-CCceEEEEECCCCC-E
Confidence 3333334445555555555554444332 2334455555556888888877755665565 89999999999999 5
Q ss_pred EEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecC-CCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCC
Q 001184 363 LVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKD-SSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGS 441 (1130)
Q Consensus 363 lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~ 441 (1130)
||+|..+|.|.|||..+.+.+. .+.+ |...|.+++|. +..+.+|+.|+.|..+|+...
T Consensus 232 LavG~~~g~v~iwD~~~~k~~~-------------------~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~ 290 (484)
T KOG0305|consen 232 LAVGTSDGTVQIWDVKEQKKTR-------------------TLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRIS 290 (484)
T ss_pred EEEeecCCeEEEEehhhccccc-------------------cccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecc
Confidence 9999999999999998877765 3455 99999999998 778999999999999999987
Q ss_pred ccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEE--e
Q 001184 442 NDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFST--A 518 (1130)
Q Consensus 442 ~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~--s 518 (1130)
+.... .+.+|...|..+.|++|+. ++++|+.|+.+.||| ....++..+..|.+.|.+++|+|-.. .+||+| +
T Consensus 291 ~~~~~--~~~~H~qeVCgLkws~d~~--~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~-~lLAsGGGs 365 (484)
T KOG0305|consen 291 QHVVS--TLQGHRQEVCGLKWSPDGN--QLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQS-GLLATGGGS 365 (484)
T ss_pred hhhhh--hhhcccceeeeeEECCCCC--eeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCcc-CceEEcCCC
Confidence 76543 4889999999999999999 899999999999999 78888999999999999999998765 588887 4
Q ss_pred cCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcC
Q 001184 519 VDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDT 598 (1130)
Q Consensus 519 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 598 (1130)
.|++|++||..++..+.... .+..|.++.|++..+.|+++. +..+..|.||+..+.+.+..+.+|.. .|..++++|
T Consensus 366 ~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sth--G~s~n~i~lw~~ps~~~~~~l~gH~~-RVl~la~SP 441 (484)
T KOG0305|consen 366 ADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTH--GYSENQITLWKYPSMKLVAELLGHTS-RVLYLALSP 441 (484)
T ss_pred cccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEec--CCCCCcEEEEeccccceeeeecCCcc-eeEEEEECC
Confidence 69999999999777666554 455799999999998887764 24467999999999999999999887 799999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCC
Q 001184 599 TRNRILAAGEDNQIKFWDMDNV 620 (1130)
Q Consensus 599 ~~~~l~~~~~dg~i~vwd~~~~ 620 (1130)
||..+++|+.|.++++|++-..
T Consensus 442 dg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 442 DGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCCEEEEecccCcEEeccccCC
Confidence 9999999999999999998765
No 86
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=3.9e-26 Score=235.84 Aligned_cols=295 Identities=18% Similarity=0.279 Sum_probs=226.0
Q ss_pred CccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCC
Q 001184 766 SASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKND 845 (1130)
Q Consensus 766 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg 845 (1130)
|...|.++++.|.|.++++|+-|.+|++||+......... ...+.......|.++.||+.|
T Consensus 166 gtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~-------------------fr~l~P~E~h~i~sl~ys~Tg 226 (641)
T KOG0772|consen 166 GTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRS-------------------FRQLQPCETHQINSLQYSVTG 226 (641)
T ss_pred CceEEEEeeecCCCceeeeccccceEEEEecccccccchh-------------------hhccCcccccccceeeecCCC
Confidence 8888999999999999999999999999998753322110 001112356679999999999
Q ss_pred CEEEEEe-CCeEEEEECCCceeEEEE------------eCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCe-EEE
Q 001184 846 SYVMSAG-GGKVSLFNMMNFKVMTTF------------MSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDE-VKT 911 (1130)
Q Consensus 846 ~~la~~~-dg~i~iwd~~~~~~~~~~------------~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~-~~~ 911 (1130)
..|++.+ ....+|+|....+..... ++|...++|.+|+|++...+.+++.||+++|||+...+ .+.
T Consensus 227 ~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~q 306 (641)
T KOG0772|consen 227 DQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQ 306 (641)
T ss_pred CeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhee
Confidence 8887776 678999999876655443 46888899999999888899999999999999998543 333
Q ss_pred EEe-----cCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCC-CCeEEEEEcCCCcEEEE-Ec
Q 001184 912 KLK-----GHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLP-VGETRVQFHSDQVRLLV-NH 984 (1130)
Q Consensus 912 ~l~-----~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~d~~~l~~-~~ 984 (1130)
.++ +..-+++.++|++||+++|.|..||.|.+|+..+...... ..+...|.+ ..+++|.||+||++|++ +.
T Consensus 307 Vik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~--~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~ 384 (641)
T KOG0772|consen 307 VIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPV--MKVKDAHLPGQDITSISFSYDGNYLLSRGF 384 (641)
T ss_pred EEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccc--eEeeeccCCCCceeEEEeccccchhhhccC
Confidence 332 3345789999999999999999999999999866443322 233333332 58999999999999999 89
Q ss_pred CCcEEEEECCCcee-eeeeecCCCCCCCeEEEEECCCCCEEEEEeC------CCcEEEEeCCCcccccccCCCcccccCC
Q 001184 985 ETQLAIYDGSKMEC-IRQWVPQDVLSSPISSAAYSCNSQLIYATFT------DGSIGVFDADSLRLRCRIAPSAYMSQAS 1057 (1130)
Q Consensus 985 d~~i~v~d~~~~~~-~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~------Dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 1057 (1130)
|+++++||++..+. +..+.+. ....+-+.++||||.++|++|.. .|.+++||..+.+.+..+...
T Consensus 385 D~tLKvWDLrq~kkpL~~~tgL-~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~------- 456 (641)
T KOG0772|consen 385 DDTLKVWDLRQFKKPLNVRTGL-PTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS------- 456 (641)
T ss_pred CCceeeeeccccccchhhhcCC-CccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC-------
Confidence 99999999997554 3333222 11456788999999999999984 478999999999999888743
Q ss_pred CCCceeeeEEEEEcCCCCCEEEEEeCCCcEEE-EeCCC
Q 001184 1058 PNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKV-IEPSE 1094 (1130)
Q Consensus 1058 ~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~v-W~~~~ 1094 (1130)
...++.+.|+|.- +.|.+|+.||+++| ||...
T Consensus 457 ----~aSvv~~~WhpkL-NQi~~gsgdG~~~vyYdp~~ 489 (641)
T KOG0772|consen 457 ----TASVVRCLWHPKL-NQIFAGSGDGTAHVYYDPNE 489 (641)
T ss_pred ----CceEEEEeecchh-hheeeecCCCceEEEECccc
Confidence 3567889999964 45666777888775 55543
No 87
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=8.4e-25 Score=214.51 Aligned_cols=281 Identities=15% Similarity=0.222 Sum_probs=229.0
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 425 (1130)
-...|.++.|+++|.. +++++.|.+++|||..+|+..+ ++..++-.|..++|......+.
T Consensus 13 ~~~~i~sl~fs~~G~~-litss~dDsl~LYd~~~g~~~~-------------------ti~skkyG~~~~~Fth~~~~~i 72 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLL-LITSSEDDSLRLYDSLSGKQVK-------------------TINSKKYGVDLACFTHHSNTVI 72 (311)
T ss_pred CCCceeEEEecCCCCE-EEEecCCCeEEEEEcCCCceee-------------------EeecccccccEEEEecCCceEE
Confidence 4679999999999995 7778889999999999999876 3455666888899988777777
Q ss_pred EEeC--CCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEE
Q 001184 426 VAFT--KHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYS 502 (1130)
Q Consensus 426 s~~~--d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~ 502 (1130)
.++. |.+|+.-++.+.+.++ -+.||...|.+++.+|-+. .+++++.|++|++|| ...++...+.....++.
T Consensus 73 ~sStk~d~tIryLsl~dNkylR---YF~GH~~~V~sL~~sP~~d--~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~- 146 (311)
T KOG1446|consen 73 HSSTKEDDTIRYLSLHDNKYLR---YFPGHKKRVNSLSVSPKDD--TFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIA- 146 (311)
T ss_pred EccCCCCCceEEEEeecCceEE---EcCCCCceEEEEEecCCCC--eEEecccCCeEEeeEecCCCCceEEecCCCcce-
Confidence 7766 8899999999988776 6899999999999999988 899999999999999 65777666655445554
Q ss_pred EeecccCCccEEEEEecCCcEEEEEccCCc--ceeeec---CCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCC
Q 001184 503 VCPHQKENIHFIFSTAVDGKIKAWLYDNVG--SRVDYD---APGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG 577 (1130)
Q Consensus 503 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~--~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1130)
+| ++.|-++|++...+.|++||++... +...+. ......+.+.|+|||++++.+.. .+.+++.|.-+|
T Consensus 147 -Af--Dp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~----~s~~~~lDAf~G 219 (311)
T KOG1446|consen 147 -AF--DPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN----ASFIYLLDAFDG 219 (311)
T ss_pred -eE--CCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC----CCcEEEEEccCC
Confidence 44 4666788888877799999998753 222332 23457899999999999999875 889999999999
Q ss_pred ceeEEEecccCce--eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCc
Q 001184 578 ALKRTYIGFRKKS--AGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQG 655 (1130)
Q Consensus 578 ~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~ 655 (1130)
..+.++.++.... -...+|+||++++++|+.||+|.+|+++++..+..+... ...++.++.|+|.-.+++++ +..
T Consensus 220 ~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-~~~~~~~~~fnP~~~mf~sa--~s~ 296 (311)
T KOG1446|consen 220 TVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-NGGPVSCVRFNPRYAMFVSA--SSN 296 (311)
T ss_pred cEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-CCCCccccccCCceeeeeec--Cce
Confidence 9999988776532 245789999999999999999999999999999998875 34478999999977666655 457
Q ss_pred EEEEEcC
Q 001184 656 IKILANA 662 (1130)
Q Consensus 656 i~iw~~~ 662 (1130)
+.+|-..
T Consensus 297 l~fw~p~ 303 (311)
T KOG1446|consen 297 LVFWLPD 303 (311)
T ss_pred EEEEecc
Confidence 7788654
No 88
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=9.9e-25 Score=201.40 Aligned_cols=307 Identities=15% Similarity=0.150 Sum_probs=232.2
Q ss_pred CccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCC
Q 001184 766 SASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKND 845 (1130)
Q Consensus 766 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg 845 (1130)
....|.+++|.|.|...+++++..++++-.+..-.....+...+...+ .+.......|.+.|.|.+|||+|
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp---------~v~~kr~khhkgsiyc~~ws~~g 101 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPP---------SVLCKRNKHHKGSIYCTAWSPCG 101 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCC---------eEEeeeccccCccEEEEEecCcc
Confidence 678899999999999999999999998865432111111111111000 00111123689999999999999
Q ss_pred CEEEEEe-CCeEEEEECCCcee-----EEEEeCCCCCeEEEEEeCC---CCcEEEEEe-CCCcEEEEEeecCeEEEEEec
Q 001184 846 SYVMSAG-GGKVSLFNMMNFKV-----MTTFMSPPPASTFLAFHPQ---DNNIIAIGM-EDSTIQIYNVRVDEVKTKLKG 915 (1130)
Q Consensus 846 ~~la~~~-dg~i~iwd~~~~~~-----~~~~~~~~~~i~~l~~sp~---~~~~lasg~-~dg~v~iwd~~~~~~~~~l~~ 915 (1130)
++|++|+ |.+|++...+...+ -..+.-|.+.|..++|-.+ ++.+|++++ .|..|++-|..+|+....+.+
T Consensus 102 eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sg 181 (350)
T KOG0641|consen 102 ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSG 181 (350)
T ss_pred CeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecC
Confidence 9999999 78898876553322 2346678999999999753 467888765 467888889999999999999
Q ss_pred CCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCC-CCCCeEEEEEcCCCcEEEEE-cCCcEEEEEC
Q 001184 916 HQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGK-LPVGETRVQFHSDQVRLLVN-HETQLAIYDG 993 (1130)
Q Consensus 916 h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~~~-~d~~i~v~d~ 993 (1130)
|++.|.++- +=+|-++++++.|.+|++||+.-..+..........+. ....|.+++..|.|++|+++ .|....+||+
T Consensus 182 htghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydi 260 (350)
T KOG0641|consen 182 HTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDI 260 (350)
T ss_pred CcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEe
Confidence 999998872 33578999999999999999987655444333332222 33679999999999999997 4888999999
Q ss_pred CCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCC
Q 001184 994 SKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQ 1073 (1130)
Q Consensus 994 ~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1073 (1130)
+.+..++.+.+| ...|.++.|||...||++++.|..|++=|+. |.+...+..- +. -.|...++.+.|+|+
T Consensus 261 rg~r~iq~f~ph---sadir~vrfsp~a~yllt~syd~~ikltdlq-gdla~el~~~--vv----~ehkdk~i~~rwh~~ 330 (350)
T KOG0641|consen 261 RGGRMIQRFHPH---SADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ-GDLAHELPIM--VV----AEHKDKAIQCRWHPQ 330 (350)
T ss_pred eCCceeeeeCCC---ccceeEEEeCCCceEEEEecccceEEEeecc-cchhhcCceE--EE----EeccCceEEEEecCc
Confidence 999999999887 7899999999999999999999999999987 4443333211 11 124456788999997
Q ss_pred CCCEEEEEeCCCcEEEEeCC
Q 001184 1074 EPNQLAVGLTDGSVKVIEPS 1093 (1130)
Q Consensus 1074 ~~~~l~s~~~Dg~v~vW~~~ 1093 (1130)
+ .-+++.+.|.++-+|-+.
T Consensus 331 d-~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 331 D-FSFISSSADKTATLWALN 349 (350)
T ss_pred c-ceeeeccCcceEEEeccC
Confidence 4 678899999999999764
No 89
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.6e-26 Score=216.50 Aligned_cols=266 Identities=16% Similarity=0.261 Sum_probs=214.3
Q ss_pred cCCCCCcccccC-CcccceeeeccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeecccccccee
Q 001184 323 PVPSQQATWSLD-DLPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQ 401 (1130)
Q Consensus 323 s~~~~~~~~~~~-~~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (1130)
...|++.+-..+ .......+.+.-.+.+..|+||++....+++++.||+++|||+..... +
T Consensus 35 ~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~----P-------------- 96 (311)
T KOG0277|consen 35 AGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK----P-------------- 96 (311)
T ss_pred ccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCc----c--------------
Confidence 344555555554 333344555667899999999999887899999999999999532211 1
Q ss_pred eeeecCCCccEEEEEEcC-CCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcE
Q 001184 402 AAIVKDSSISVSRVAWSP-DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLI 480 (1130)
Q Consensus 402 ~~~~~~h~~~V~~v~~sp-dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v 480 (1130)
...++.|...|.++.|++ +++.+++++.|++|++|+...++.+. ++.||...|...+|+|.... +++++|.|+++
T Consensus 97 i~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~---Tf~gh~~~Iy~a~~sp~~~n-lfas~Sgd~~l 172 (311)
T KOG0277|consen 97 IHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQ---TFNGHNSCIYQAAFSPHIPN-LFASASGDGTL 172 (311)
T ss_pred hhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceE---eecCCccEEEEEecCCCCCC-eEEEccCCceE
Confidence 125889999999999999 56678888999999999998876555 78999999999999998776 79999999999
Q ss_pred EEEe--cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcc-eeeecCCCccEEEEEEecCC-CeE
Q 001184 481 RVWD--LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGS-RVDYDAPGLWCTTMLYSADG-SRL 556 (1130)
Q Consensus 481 ~iwd--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~s~~~-~~l 556 (1130)
++|| ..|+.+. +..|...+.++.|+.. +..+|+||+.|+.|+.||+++.+. +.++.+|+-.|..++|+|.. ..|
T Consensus 173 ~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky-~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lL 250 (311)
T KOG0277|consen 173 RLWDVRSPGKFMS-IEAHNSEILCCDWSKY-NHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLL 250 (311)
T ss_pred EEEEecCCCceeE-EEeccceeEeeccccc-CCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHh
Confidence 9999 5566665 8889999999999864 447999999999999999988654 55788899999999999965 467
Q ss_pred EEeeecCCCCcEEEEeeCCCCc-eeEEEecccCceeEEEEEcCC-CCEEEEEeCCCcEEEEeC
Q 001184 557 FSCGTSKEGDSHLVEWNESEGA-LKRTYIGFRKKSAGVVQFDTT-RNRILAAGEDNQIKFWDM 617 (1130)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~ 617 (1130)
++++. |-++++||...+. .+.++. |+..-+..+.|++- ..++++.+.|+.++||+.
T Consensus 251 aSasY----DmT~riw~~~~~ds~~e~~~-~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 251 ASASY----DMTVRIWDPERQDSAIETVD-HHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhccc----cceEEecccccchhhhhhhh-ccceEEeccccccccCceeeecccccceeeecc
Confidence 77877 8999999998554 444444 44447777888864 468999999999999984
No 90
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.1e-25 Score=243.18 Aligned_cols=278 Identities=16% Similarity=0.270 Sum_probs=235.5
Q ss_pred EEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeC
Q 001184 350 VVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFT 429 (1130)
Q Consensus 350 V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~ 429 (1130)
..-+.||..+ +||+|. ...|++|+..+++... ...-+...|+++.|+++|.+||+|..
T Consensus 180 ~nlldWss~n--~laVal-g~~vylW~~~s~~v~~-------------------l~~~~~~~vtSv~ws~~G~~LavG~~ 237 (484)
T KOG0305|consen 180 LNLLDWSSAN--VLAVAL-GQSVYLWSASSGSVTE-------------------LCSFGEELVTSVKWSPDGSHLAVGTS 237 (484)
T ss_pred hhHhhcccCC--eEEEEe-cceEEEEecCCCceEE-------------------eEecCCCceEEEEECCCCCEEEEeec
Confidence 3456788555 577775 4489999999998654 22333789999999999999999999
Q ss_pred CCeEEEEEecCCccceeeeeeec-CCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeee-EecCCCcCEEEEeec
Q 001184 430 KHLIHLYTYQGSNDLCQSLEIDA-HVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLF-QFEGHEAPVYSVCPH 506 (1130)
Q Consensus 430 d~~i~vwd~~~~~~~~~~~~~~~-h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~-~~~~h~~~v~~~~~~ 506 (1130)
+|.|.|||....+.++ .+.+ |...|-+++|. +. .+.+|+.|+.|..+| ...+... ++.+|...|..+.|+
T Consensus 238 ~g~v~iwD~~~~k~~~---~~~~~h~~rvg~laW~--~~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws 310 (484)
T KOG0305|consen 238 DGTVQIWDVKEQKKTR---TLRGSHASRVGSLAWN--SS--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWS 310 (484)
T ss_pred CCeEEEEehhhccccc---cccCCcCceeEEEecc--Cc--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEEC
Confidence 9999999999877665 5667 99999999999 44 789999999999999 4444433 488999999999996
Q ss_pred ccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEec-CCCeEEEeeecCCCCcEEEEeeCCCCceeEEEec
Q 001184 507 QKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSA-DGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIG 585 (1130)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 585 (1130)
.++.++++|+.|+.+.|||.........+..|...|.+++|+| ....||+|+ +..|+.|++||..+++.+.....
T Consensus 311 --~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGG--Gs~D~~i~fwn~~~g~~i~~vdt 386 (484)
T KOG0305|consen 311 --PDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGG--GSADRCIKFWNTNTGARIDSVDT 386 (484)
T ss_pred --CCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcC--CCcccEEEEEEcCCCcEeccccc
Confidence 4668999999999999999988899999999999999999999 455667765 46699999999999999988774
Q ss_pred ccCceeEEEEEcCCCCEEEE--EeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001184 586 FRKKSAGVVQFDTTRNRILA--AGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANAD 663 (1130)
Q Consensus 586 ~~~~~v~~~~~~~~~~~l~~--~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 663 (1130)
...|..+.|++..+-|++ |..++.|.||++.+.+.+..+.+|.. .|..++++|||..+++|+.|.++++|++-+
T Consensus 387 --gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~--RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 387 --GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTS--RVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred --CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcc--eeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 447999999999877776 45678999999999998888887765 799999999999999999999999999866
Q ss_pred C
Q 001184 664 G 664 (1130)
Q Consensus 664 ~ 664 (1130)
.
T Consensus 463 ~ 463 (484)
T KOG0305|consen 463 E 463 (484)
T ss_pred C
Confidence 4
No 91
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.95 E-value=4.5e-24 Score=225.15 Aligned_cols=623 Identities=15% Similarity=0.191 Sum_probs=344.1
Q ss_pred eeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecC-CCe--e----eEecCCCcCEEEEeecccCCccEEEEE
Q 001184 445 CQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLS-GRK--L----FQFEGHEAPVYSVCPHQKENIHFIFST 517 (1130)
Q Consensus 445 ~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~-~~~--~----~~~~~h~~~v~~~~~~~~~~~~~l~s~ 517 (1130)
+....+.+|...|+++.|+|-... +|+||+.|..|+||.+. |-. + ..+.+..-.|.++.|++..|| |+..
T Consensus 70 r~i~~l~~H~d~VtDl~FspF~D~-LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDg--il~s 146 (1012)
T KOG1445|consen 70 RDIGILAAHGDQVTDLGFSPFADE-LLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADG--ILAS 146 (1012)
T ss_pred cccceeecccceeeccCccccchh-hhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCc--eEEe
Confidence 344457899999999999995555 79999999999999933 321 1 123333456789999998875 4444
Q ss_pred ecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCC-CceeEEEecccCceeEEEEE
Q 001184 518 AVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE-GALKRTYIGFRKKSAGVVQF 596 (1130)
Q Consensus 518 s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~ 596 (1130)
+..|++++||+.+.+....+..|...|.++.|+.||..+++... +.+|+|||.+. ++.++...+|.+..-..+.|
T Consensus 147 ~a~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscK----dkqirifDPRa~~~piQ~te~H~~~rdsRv~w 222 (1012)
T KOG1445|consen 147 GAHGSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCK----DKQIRIFDPRASMEPIQTTEGHGGMRDSRVLW 222 (1012)
T ss_pred ccCceEEEEEcccCceeecccCCchhhhccccccCCceEeeecC----CcceEEeCCccCCCccccccccccchhheeee
Confidence 56799999999999999999999999999999999999999875 89999999875 67788888887654555777
Q ss_pred cCCCCEEEEEeCC----CcEEEEeCCC-CceeEEEeccCCCCCcceEEEcCCCCEEEEEe-CCCcEEEEEcCCCchhhhh
Q 001184 597 DTTRNRILAAGED----NQIKFWDMDN-VNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTT-ADQGIKILANADGLRALRA 670 (1130)
Q Consensus 597 ~~~~~~l~~~~~d----g~i~vwd~~~-~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~ 670 (1130)
.-+-.+|++.+.+ ..|++||... +..+.++...... .|.---|.||.++|+.++ .+..+..+++.+.+..+..
T Consensus 223 ~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~st-GvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qPyLs~ 301 (1012)
T KOG1445|consen 223 AGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSST-GVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQPYLSH 301 (1012)
T ss_pred ccchhhhhhcccchhhheeeeeeeccccCCcceeEEeeccc-ceEeeeecCCCceEEEecCCcceEEEEEecCCCcchhh
Confidence 6655578877654 5699999876 4566666665432 455556889888776554 4677877777654322221
Q ss_pred hcccccccccc------cccccccc-------------cceee---------cc----cccccc----------------
Q 001184 671 IETRAYETSRA------STEMKVPG-------------SAVVT---------TI----TPVLSK---------------- 702 (1130)
Q Consensus 671 ~~~~~~~~~~~------~~~~~~~~-------------~~~~~---------~~----sp~~~~---------------- 702 (1130)
...+..+.... ...+..++ -+-.. .| -|+...
T Consensus 302 v~~~tle~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~~~ageWlnG~Nq 381 (1012)
T KOG1445|consen 302 VFELTLEEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEPGCTAGEWLNGTNQ 381 (1012)
T ss_pred hhhhcchhhhccceecchhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhhCccccCCccCcCccceecCccc
Confidence 11111100000 00000000 00000 00 000000
Q ss_pred ----c--cccCCCCCCCCcccccCCC--------ccccCCCC----cccccccCC--------------Cccceeecccc
Q 001184 703 ----A--ERVDRSSPARPSTILNGAD--------SAARGIEK----PRNLEDISD--------------KTKPWELTEIV 750 (1130)
Q Consensus 703 ----~--~~~~~~~~~~~~~~~~~~~--------~~~~~~~~----~~~~~~~d~--------------~i~~w~~~~~~ 750 (1130)
. .-.++.....+........ ....+... .-.....+. .++-.+.....
T Consensus 382 ~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~~~~e~r~l~~~~~E 461 (1012)
T KOG1445|consen 382 VVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVPKKEEVRELDYRPYE 461 (1012)
T ss_pred cccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccCCCcCcchhhhhhcccccc
Confidence 0 0000111000000000000 00000000 000000000 00000000000
Q ss_pred CCcceeEEEecC-----CCCCccceEEEEEeccCCeEEE------eeeCCeEEeeecCCCCCCC----C--ccc-cccc-
Q 001184 751 DPLQCRVVAMPE-----STDSASKVARLLYTNSGIGILA------LWSNGVQKLWKWNRTEQNP----S--GKA-TAAV- 811 (1130)
Q Consensus 751 ~~~~~~~~~~~~-----~~~~~~~i~~l~~s~~g~~l~~------~~~dg~i~iw~~~~~~~~~----~--~~~-~~~~- 811 (1130)
. ......++ ..+..+++..+. |....++- ..+-.+..+-.-..++..| . |.. .+..
T Consensus 462 ~---~~g~~~~~~dad~~~g~sS~~s~~~--~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~~~g~~~sat~~ 536 (1012)
T KOG1445|consen 462 K---ENGVHTPNADADSTQGNSSPISTIS--PEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPVNFGKPISATNR 536 (1012)
T ss_pred c---ccCccCCCcccccccCCCCCccccC--CCcccccCCCCcccccccccccccCccccccCCCCCCcccCCCcccccc
Confidence 0 00000000 000001010000 00000000 0000000000000000000 0 000 0000
Q ss_pred ---------------ccccccCCCCcceecc-----CCC-CCCCceeEEEEecCCCEEEE---EeCCeEEEEECCCc-ee
Q 001184 812 ---------------APQHWQPSNGLLMTND-----VPE-NAEDVVPCVALSKNDSYVMS---AGGGKVSLFNMMNF-KV 866 (1130)
Q Consensus 812 ---------------~~~~w~~~~~~~~~~~-----~~~-~~~~~i~~l~~s~dg~~la~---~~dg~i~iwd~~~~-~~ 866 (1130)
.+.-+....|...... +.+ ...-+-.+=-|..+.+++|+ |+.|.|-||++..- ++
T Consensus 537 v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsnGfcan~~rvAVPL~g~gG~iai~el~~PGrL 616 (1012)
T KOG1445|consen 537 VPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPGESNGFCANNKRVAVPLAGSGGVIAIYELNEPGRL 616 (1012)
T ss_pred ccccccccccceeeccchheeeccCccccchhhhhhhhcccccCCCccCceeeccceEEEEecCCCceEEEEEcCCCCCC
Confidence 0001111111110000 000 00001111123335556654 34789999998642 22
Q ss_pred E----EEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecC-------eEEEEEecCCCCeeEEEEccC-CCeEEE
Q 001184 867 M----TTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVD-------EVKTKLKGHQKHITGLAFSTN-LNILVS 934 (1130)
Q Consensus 867 ~----~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~-------~~~~~l~~h~~~V~~l~~s~d-g~~L~s 934 (1130)
- -.+ .....|+.+.|.|.|...||++++||.|++|.+..+ .....+.+|...|+++.|+|- ...|++
T Consensus 617 PDgv~p~l-~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~ 695 (1012)
T KOG1445|consen 617 PDGVMPGL-FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAV 695 (1012)
T ss_pred Cccccccc-ccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhh
Confidence 1 111 134569999999999999999999999999999754 345678899999999999995 468999
Q ss_pred EeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEE-EcCCcEEEEECCCceee-eeeecCCCCCCCe
Q 001184 935 SGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV-NHETQLAIYDGSKMECI-RQWVPQDVLSSPI 1012 (1130)
Q Consensus 935 ~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~d~~i~v~d~~~~~~~-~~~~~~~~~~~~v 1012 (1130)
++.|.+|++||+.+.+..... ..+.+.|-.++|||||+.+++ +.|++++||+...++.. ..-.+.. ...-
T Consensus 696 asyd~Ti~lWDl~~~~~~~~l------~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpv--gtRg 767 (1012)
T KOG1445|consen 696 ASYDSTIELWDLANAKLYSRL------VGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPV--GTRG 767 (1012)
T ss_pred hhccceeeeeehhhhhhhhee------ccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCc--cCcc
Confidence 999999999999986543222 223488999999999999998 89999999999876542 2222221 2344
Q ss_pred EEEEECCCCCEEEEEeCC----CcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEE
Q 001184 1013 SSAAYSCNSQLIYATFTD----GSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVK 1088 (1130)
Q Consensus 1013 ~~v~~s~dg~~l~t~~~D----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~ 1088 (1130)
..+.|--||+++++.+.| ..|.+||..+........ ...+ .+-..+.=.|.++.+.++++|-.|..|.
T Consensus 768 ARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t-----~~lD---vaps~LvP~YD~Ds~~lfltGKGD~~v~ 839 (1012)
T KOG1445|consen 768 ARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYT-----QVLD---VAPSPLVPHYDYDSNVLFLTGKGDRFVN 839 (1012)
T ss_pred eeEEEEecCcEEEEecccccchhhhhhhhhhhccCCccee-----eeec---ccCccccccccCCCceEEEecCCCceEE
Confidence 567788899999888865 469999987654221110 0000 0001112235555677888999999999
Q ss_pred EEeCCCCcc
Q 001184 1089 VIEPSETER 1097 (1130)
Q Consensus 1089 vW~~~~~~~ 1097 (1130)
.|.+.-+++
T Consensus 840 ~yEv~~esP 848 (1012)
T KOG1445|consen 840 MYEVIYESP 848 (1012)
T ss_pred EEEecCCCc
Confidence 999987775
No 92
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.5e-25 Score=229.44 Aligned_cols=294 Identities=15% Similarity=0.198 Sum_probs=232.2
Q ss_pred ccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeecc----ccccceeeeeecCCCccEEEEEEcC
Q 001184 344 MHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMS----NCSMMLQAAIVKDSSISVSRVAWSP 419 (1130)
Q Consensus 344 ~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~h~~~V~~v~~sp 419 (1130)
..|.-.|.||+++||+++ +++++.+|+|.=|++.+|+.... +|... ....+.+..- ++|...|.+++.|+
T Consensus 139 ~~H~~s~~~vals~d~~~-~fsask~g~i~kw~v~tgk~~~~----i~~~~ev~k~~~~~~k~~r-~~h~keil~~avS~ 212 (479)
T KOG0299|consen 139 GKHQLSVTSVALSPDDKR-VFSASKDGTILKWDVLTGKKDRY----IIERDEVLKSHGNPLKESR-KGHVKEILTLAVSS 212 (479)
T ss_pred ccccCcceEEEeeccccc-eeecCCCcceeeeehhcCccccc----ccccchhhhhccCCCCccc-ccccceeEEEEEcC
Confidence 359999999999999995 89999999999999999986521 11111 0111222111 48999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCc
Q 001184 420 DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEA 498 (1130)
Q Consensus 420 dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~ 498 (1130)
||+|||+|+.|..|.||+.++.+.++ .+.+|.+.|.+++|-.... -+++++.|++|++|+ .....+.++.||..
T Consensus 213 Dgkylatgg~d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vetlyGHqd 287 (479)
T KOG0299|consen 213 DGKYLATGGRDRHVQIWDCDTLEHVK---VFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVETLYGHQD 287 (479)
T ss_pred CCcEEEecCCCceEEEecCcccchhh---cccccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHHHhCCcc
Confidence 99999999999999999999987665 6899999999999987766 689999999999999 77778899999999
Q ss_pred CEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCc
Q 001184 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA 578 (1130)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1130)
.|.++... .-+..+-.|+.|+++++|++. ......+.++...+.|++|-.+. .+++|+. +|.|.+|++...+
T Consensus 288 ~v~~IdaL--~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~~-HfvsGSd----nG~IaLWs~~KKk 359 (479)
T KOG0299|consen 288 GVLGIDAL--SRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFINDE-HFVSGSD----NGSIALWSLLKKK 359 (479)
T ss_pred ceeeechh--cccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEeccc-ceeeccC----CceEEEeeecccC
Confidence 99999764 333555566699999999994 45555677777789999998654 5677775 9999999999988
Q ss_pred eeEEEecccC-----------ceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC----ceeEEEeccCCCCCcceEEEcCC
Q 001184 579 LKRTYIGFRK-----------KSAGVVQFDTTRNRILAAGEDNQIKFWDMDNV----NMLTSTEAEGGLPSLPRLRFNKE 643 (1130)
Q Consensus 579 ~~~~~~~~~~-----------~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~~~i~~v~~s~~ 643 (1130)
++.+....+. ..+++++..|..+++++|+.+|.|++|-+..+ +++..+... +-|++++|+++
T Consensus 360 plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~---GfVNsl~f~~s 436 (479)
T KOG0299|consen 360 PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLV---GFVNSLAFSNS 436 (479)
T ss_pred ceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccc---cEEEEEEEccC
Confidence 8876653321 15778999999999999999999999998877 445555543 36899999999
Q ss_pred CCEEEEE-eCCCcEEEE
Q 001184 644 GNLLVVT-TADQGIKIL 659 (1130)
Q Consensus 644 ~~~l~~~-~~dg~i~iw 659 (1130)
|+.+++| +....+--|
T Consensus 437 gk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 437 GKRIVAGIGKEHRLGRW 453 (479)
T ss_pred CCEEEEeccccccccee
Confidence 9966665 333334334
No 93
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=4.7e-26 Score=235.26 Aligned_cols=293 Identities=19% Similarity=0.264 Sum_probs=226.8
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEE
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 424 (1130)
+|...|.++++.|.|.+ +++|+.|.+|++||+..-..... .|+. +.......|.+++||+.|..|
T Consensus 165 hgtk~Vsal~~Dp~GaR-~~sGs~Dy~v~~wDf~gMdas~~-~fr~-------------l~P~E~h~i~sl~ys~Tg~~i 229 (641)
T KOG0772|consen 165 HGTKIVSALAVDPSGAR-FVSGSLDYTVKFWDFQGMDASMR-SFRQ-------------LQPCETHQINSLQYSVTGDQI 229 (641)
T ss_pred CCceEEEEeeecCCCce-eeeccccceEEEEecccccccch-hhhc-------------cCcccccccceeeecCCCCeE
Confidence 47789999999999997 99999999999999986543321 2332 223345589999999999999
Q ss_pred EEEeCCCeEEEEEecCCccc---------eeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-c-CCCeeeEe
Q 001184 425 GVAFTKHLIHLYTYQGSNDL---------CQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-L-SGRKLFQF 493 (1130)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~---------~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~-~~~~~~~~ 493 (1130)
++.+.....+|+|-.+-... .-...-.||...+++.+|.|+.+. .++|++.||++|||| . ..+.+..+
T Consensus 230 Lvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~-~FlT~s~DgtlRiWdv~~~k~q~qVi 308 (641)
T KOG0772|consen 230 LVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKE-EFLTCSYDGTLRIWDVNNTKSQLQVI 308 (641)
T ss_pred EEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCccc-ceEEecCCCcEEEEecCCchhheeEE
Confidence 88888889999997653322 222334689999999999999988 799999999999999 3 22333333
Q ss_pred c-----CCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCccee---eecCCCc--cEEEEEEecCCCeEEEeeecC
Q 001184 494 E-----GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV---DYDAPGL--WCTTMLYSADGSRLFSCGTSK 563 (1130)
Q Consensus 494 ~-----~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~---~~~~~~~--~v~~~~~s~~~~~l~~~~~~~ 563 (1130)
+ +..-+++.++|+ +++..|++|+.||.|.+|+........ ....|.. .|+++.|++||++|++-+.
T Consensus 309 k~k~~~g~Rv~~tsC~~n--rdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~-- 384 (641)
T KOG0772|consen 309 KTKPAGGKRVPVTSCAWN--RDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGF-- 384 (641)
T ss_pred eeccCCCcccCceeeecC--CCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccC--
Confidence 2 344567788885 566889999999999999975543322 3344544 8999999999999999876
Q ss_pred CCCcEEEEeeCCCC-ceeEEEecccC-ceeEEEEEcCCCCEEEEEe------CCCcEEEEeCCCCceeEEEeccCCCCCc
Q 001184 564 EGDSHLVEWNESEG-ALKRTYIGFRK-KSAGVVQFDTTRNRILAAG------EDNQIKFWDMDNVNMLTSTEAEGGLPSL 635 (1130)
Q Consensus 564 ~~~~~i~~wd~~~~-~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~------~dg~i~vwd~~~~~~~~~~~~~~~~~~i 635 (1130)
|..+++||++.. +++....+... ..-+.++|+|+.+.|++|. ..|.+++||..+.+.++.+..... .|
T Consensus 385 --D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~a--Sv 460 (641)
T KOG0772|consen 385 --DDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTA--SV 460 (641)
T ss_pred --CCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCc--eE
Confidence 899999999874 34444443222 1345589999999999975 457899999999999998877643 78
Q ss_pred ceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001184 636 PRLRFNKEGNLLVVTTADQGIKILAN 661 (1130)
Q Consensus 636 ~~v~~s~~~~~l~~~~~dg~i~iw~~ 661 (1130)
..+.|+|.-+.+++|+.||++++|--
T Consensus 461 v~~~WhpkLNQi~~gsgdG~~~vyYd 486 (641)
T KOG0772|consen 461 VRCLWHPKLNQIFAGSGDGTAHVYYD 486 (641)
T ss_pred EEEeecchhhheeeecCCCceEEEEC
Confidence 89999999899999999999999754
No 94
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=7.1e-25 Score=213.16 Aligned_cols=253 Identities=17% Similarity=0.234 Sum_probs=192.2
Q ss_pred ceEEEEEeccCCeEEEee-eCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCE
Q 001184 769 KVARLLYTNSGIGILALW-SNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSY 847 (1130)
Q Consensus 769 ~i~~l~~s~~g~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~ 847 (1130)
..+.+.|+||-+.+++.. ....+++|.+..... |...- ...-||- ..+.+.|.-.+..+-+..++++
T Consensus 134 hpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~d---G~~~~--~~v~~D~-------~~f~~kh~v~~i~iGiA~~~k~ 201 (420)
T KOG2096|consen 134 HPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTD---GSGSH--HFVHIDN-------LEFERKHQVDIINIGIAGNAKY 201 (420)
T ss_pred CceEEEECCCcceEEEEEccCCEEEEEEeeeccc---CCCCc--ccccccc-------cccchhcccceEEEeecCCceE
Confidence 345678888877666554 466788887644221 11100 0111221 1133456777888888889999
Q ss_pred EEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeec---C-----eEEEEEecCCC
Q 001184 848 VMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRV---D-----EVKTKLKGHQK 918 (1130)
Q Consensus 848 la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~---~-----~~~~~l~~h~~ 918 (1130)
|++++ |..|.+|++. |+.+..+......-+..+.|| +|+++|+++-.-.|++|.+-- | +.+..|+||..
T Consensus 202 imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~s 279 (420)
T KOG2096|consen 202 IMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQS 279 (420)
T ss_pred EEEecCCCcEEEEecC-CceeeeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchh
Confidence 99999 7889999998 888888887777778899999 999999999999999999742 2 34567899999
Q ss_pred CeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEe-----ccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEEC
Q 001184 919 HITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQ-----LPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDG 993 (1130)
Q Consensus 919 ~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~-----~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~ 993 (1130)
.|.+++||++..++++++.||++++||.+-.......+.. .+..........+..+|.|..|+++....+++|..
T Consensus 280 aV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~s 359 (420)
T KOG2096|consen 280 AVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFAS 359 (420)
T ss_pred heeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEc
Confidence 9999999999999999999999999998742221111111 22222335566999999999999999999999999
Q ss_pred CCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeC
Q 001184 994 SKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDA 1038 (1130)
Q Consensus 994 ~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~ 1038 (1130)
++|+....+... |+..|++++|++||+++++++ |..++|..-
T Consensus 360 e~g~~~~~~e~~--h~~~Is~is~~~~g~~~atcG-dr~vrv~~n 401 (420)
T KOG2096|consen 360 EDGKDYPELEDI--HSTTISSISYSSDGKYIATCG-DRYVRVIRN 401 (420)
T ss_pred ccCccchhHHHh--hcCceeeEEecCCCcEEeeec-ceeeeeecC
Confidence 999988777644 489999999999999999998 889999863
No 95
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3e-26 Score=243.63 Aligned_cols=241 Identities=17% Similarity=0.243 Sum_probs=206.8
Q ss_pred EEEEc-CCCCEEEEEeCCCeEEEEEecCCccc---eeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCC-
Q 001184 414 RVAWS-PDGNFIGVAFTKHLIHLYTYQGSNDL---CQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSG- 487 (1130)
Q Consensus 414 ~v~~s-pdg~~las~~~d~~i~vwd~~~~~~~---~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~- 487 (1130)
.+..+ |+++||.+||.||.|++|++...... ....+++.|.+.|++++...+++ .|+++|.|-+|++|+ ..+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTTVKVWNAHKDN 106 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCceEEEeecccCc
Confidence 34444 46788999999999999998654321 12346889999999999999998 799999999999999 555
Q ss_pred -CeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcc--ee--------eec-CCCccEEEEEEecCCCe
Q 001184 488 -RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGS--RV--------DYD-APGLWCTTMLYSADGSR 555 (1130)
Q Consensus 488 -~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~--~~--------~~~-~~~~~v~~~~~s~~~~~ 555 (1130)
-++.++..|...|.|+++- ..+..++++||.|+.|.+||++++.. .. .+. ++...|++++.++.|..
T Consensus 107 ~~c~stir~H~DYVkcla~~-ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ 185 (735)
T KOG0308|consen 107 TFCMSTIRTHKDYVKCLAYI-AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTI 185 (735)
T ss_pred chhHhhhhcccchheeeeec-ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceE
Confidence 6788899999999999984 34557999999999999999997633 11 122 56668999999999999
Q ss_pred EEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCc
Q 001184 556 LFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSL 635 (1130)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i 635 (1130)
+++|+. .+.|++||.++++.+..+.||.+ .|.++..++||.++++++.||+|++||+...+++.++..|.. .+
T Consensus 186 ivsGgt----ek~lr~wDprt~~kimkLrGHTd-NVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e--~V 258 (735)
T KOG0308|consen 186 IVSGGT----EKDLRLWDPRTCKKIMKLRGHTD-NVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE--GV 258 (735)
T ss_pred EEecCc----ccceEEeccccccceeeeecccc-ceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccC--ce
Confidence 999987 88999999999999999999888 899999999999999999999999999999999999888765 69
Q ss_pred ceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 636 PRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 636 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
.++..+|+-..+++|+.||.|..=|+.+.
T Consensus 259 WaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 259 WALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred EEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 99999999999999999999988777664
No 96
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=5.5e-25 Score=208.49 Aligned_cols=247 Identities=16% Similarity=0.226 Sum_probs=210.1
Q ss_pred ecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe
Q 001184 405 VKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD 484 (1130)
Q Consensus 405 ~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd 484 (1130)
+.+|...|.+++|+.||..||+|+.|+++.+|+++..+. .......+|.+.|..++|.|.... .+++++.|++|++||
T Consensus 16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~-~~~~~~~gh~~svdql~w~~~~~d-~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRF-RKELVYRGHTDSVDQLCWDPKHPD-LFATASGDKTIRIWD 93 (313)
T ss_pred hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhh-hhhhcccCCCcchhhheeCCCCCc-ceEEecCCceEEEEE
Confidence 568999999999999999999999999999999998743 333457899999999999997776 799999999999999
Q ss_pred -cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecC
Q 001184 485 -LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSK 563 (1130)
Q Consensus 485 -~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1130)
..+++........+.+. +.| ++++.+++.++.|..|.+.|.++.+....... ...+.-++|+.++.+++...
T Consensus 94 ~r~~k~~~~i~~~~eni~-i~w--sp~g~~~~~~~kdD~it~id~r~~~~~~~~~~-~~e~ne~~w~~~nd~Fflt~--- 166 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENIN-ITW--SPDGEYIAVGNKDDRITFIDARTYKIVNEEQF-KFEVNEISWNNSNDLFFLTN--- 166 (313)
T ss_pred eccCcEEEEeeccCcceE-EEE--cCCCCEEEEecCcccEEEEEecccceeehhcc-cceeeeeeecCCCCEEEEec---
Confidence 99999988876555554 445 45668999999999999999987665554332 33467788887777776653
Q ss_pred CCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCC
Q 001184 564 EGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKE 643 (1130)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~ 643 (1130)
+.|.|.|.....-+++..+..|.. ...|+.|+|+|+++++|+.|-.+-+||++..-+++.+....- +|..+.||.|
T Consensus 167 -GlG~v~ILsypsLkpv~si~AH~s-nCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldw--pVRTlSFS~d 242 (313)
T KOG1407|consen 167 -GLGCVEILSYPSLKPVQSIKAHPS-NCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDW--PVRTLSFSHD 242 (313)
T ss_pred -CCceEEEEeccccccccccccCCc-ceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccC--ceEEEEeccC
Confidence 379999999999999999999875 678899999999999999999999999998888888776654 7999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCC
Q 001184 644 GNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 644 ~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
|++||+++.|..|-|=++++|
T Consensus 243 g~~lASaSEDh~IDIA~vetG 263 (313)
T KOG1407|consen 243 GRMLASASEDHFIDIAEVETG 263 (313)
T ss_pred cceeeccCccceEEeEecccC
Confidence 999999999999999888777
No 97
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=6.4e-25 Score=213.85 Aligned_cols=243 Identities=19% Similarity=0.248 Sum_probs=203.9
Q ss_pred CCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCc--EEEEEeCCCcEEEEEeec
Q 001184 830 ENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNN--IIAIGMEDSTIQIYNVRV 906 (1130)
Q Consensus 830 ~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~--~lasg~~dg~v~iwd~~~ 906 (1130)
..|.+.|+++|+ ++.++|+|+ |.+|+|||+.+...+..+-.|.+.|+++.|.+ +.. .|.+|+.||.|.+|+...
T Consensus 40 ~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~~ 116 (362)
T KOG0294|consen 40 SAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVGS 116 (362)
T ss_pred cccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecC-CcchhheeeecCCCcEEEEEcCC
Confidence 379999999998 678999998 89999999999999999999999999999998 553 788999999999999999
Q ss_pred CeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCC
Q 001184 907 DEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHET 986 (1130)
Q Consensus 907 ~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~ 986 (1130)
.+++..+++|.+.|+.++.+|.|+..++.+.|+.++.||+-.++......+. ...+.+.|+|.|.+++++..+
T Consensus 117 W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~-------~~at~v~w~~~Gd~F~v~~~~ 189 (362)
T KOG0294|consen 117 WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK-------NKATLVSWSPQGDHFVVSGRN 189 (362)
T ss_pred eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC-------CcceeeEEcCCCCEEEEEecc
Confidence 9999999999999999999999999999999999999999997753333222 334559999999999999899
Q ss_pred cEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeE
Q 001184 987 QLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPL 1066 (1130)
Q Consensus 987 ~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1066 (1130)
.|-+|.+.+-.....+... ..+.++.|. ++..|++|++|+.|++||-+.+...+.+..|. ..+..+
T Consensus 190 ~i~i~q~d~A~v~~~i~~~----~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~---------~RVK~i 255 (362)
T KOG0294|consen 190 KIDIYQLDNASVFREIENP----KRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHE---------NRVKDI 255 (362)
T ss_pred EEEEEecccHhHhhhhhcc----ccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecch---------hheeee
Confidence 9999999988777666543 456677765 67789999999999999999877777766433 333333
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEeCCCCcc
Q 001184 1067 VVTSHPQEPNQLAVGLTDGSVKVIEPSETER 1097 (1130)
Q Consensus 1067 ~~~~~~~~~~~l~s~~~Dg~v~vW~~~~~~~ 1097 (1130)
.. |..+++.+|+|+|.||.|+|||+.....
T Consensus 256 ~~-~~~~~~~~lvTaSSDG~I~vWd~~~~~k 285 (362)
T KOG0294|consen 256 AS-YTNPEHEYLVTASSDGFIKVWDIDMETK 285 (362)
T ss_pred EE-EecCCceEEEEeccCceEEEEEcccccc
Confidence 33 3333678999999999999999987744
No 98
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=6.1e-24 Score=208.51 Aligned_cols=294 Identities=16% Similarity=0.286 Sum_probs=242.9
Q ss_pred eeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcE
Q 001184 489 KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSH 568 (1130)
Q Consensus 489 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 568 (1130)
..+.|....+.|.++.|+ .+|..+++++.|.++++||..++.....+..+...+..++|....+.++.++. ..+..
T Consensus 6 ~ak~f~~~~~~i~sl~fs--~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sSt--k~d~t 81 (311)
T KOG1446|consen 6 PAKVFRETNGKINSLDFS--DDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSST--KEDDT 81 (311)
T ss_pred cccccccCCCceeEEEec--CCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccC--CCCCc
Confidence 344556667899999985 56689999999999999999999999999888888999999888777777654 34789
Q ss_pred EEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEE
Q 001184 569 LVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLV 648 (1130)
Q Consensus 569 i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~ 648 (1130)
|+..++.+.+.++.|.||.+ .|..++.+|-+..+++++.|++|++||++..++...+...+. ..++|+|+|-++|
T Consensus 82 IryLsl~dNkylRYF~GH~~-~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~----pi~AfDp~GLifA 156 (311)
T KOG1446|consen 82 IRYLSLHDNKYLRYFPGHKK-RVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR----PIAAFDPEGLIFA 156 (311)
T ss_pred eEEEEeecCceEEEcCCCCc-eEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC----cceeECCCCcEEE
Confidence 99999999999999999888 899999999999999999999999999998888877766543 6789999999999
Q ss_pred EEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCC
Q 001184 649 VTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGI 728 (1130)
Q Consensus 649 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (1130)
++...+.|++||++.-.. .|
T Consensus 157 ~~~~~~~IkLyD~Rs~dk------------------------------gP------------------------------ 176 (311)
T KOG1446|consen 157 LANGSELIKLYDLRSFDK------------------------------GP------------------------------ 176 (311)
T ss_pred EecCCCeEEEEEecccCC------------------------------CC------------------------------
Confidence 999888999999754300 00
Q ss_pred CCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccc
Q 001184 729 EKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKAT 808 (1130)
Q Consensus 729 ~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 808 (1130)
+..+.
T Consensus 177 --------------------------F~tf~------------------------------------------------- 181 (311)
T KOG1446|consen 177 --------------------------FTTFS------------------------------------------------- 181 (311)
T ss_pred --------------------------ceeEc-------------------------------------------------
Confidence 00000
Q ss_pred cccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCC---eEEEEEeC
Q 001184 809 AAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPA---STFLAFHP 884 (1130)
Q Consensus 809 ~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~---i~~l~~sp 884 (1130)
+..+...+.+.+.|||||++++.+. .+.+++.|.-+|..+.++.++... -...+|+|
T Consensus 182 -------------------i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftP 242 (311)
T KOG1446|consen 182 -------------------ITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTP 242 (311)
T ss_pred -------------------cCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECC
Confidence 0002345567899999999998887 678999999999999998876543 26788999
Q ss_pred CCCcEEEEEeCCCcEEEEEeecCeEEEEEec-CCCCeeEEEEccCCCeEEEEeCCCcEEEEECCC
Q 001184 885 QDNNIIAIGMEDSTIQIYNVRVDEVKTKLKG-HQKHITGLAFSTNLNILVSSGSDAQLIFWNTDT 948 (1130)
Q Consensus 885 ~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~-h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~ 948 (1130)
+++++.+|+.||+|.+|++++++.+..+++ +.+++.++.|+|.-.+++++ +..+.+|-.+.
T Consensus 243 -ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~~ 304 (311)
T KOG1446|consen 243 -DSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPDE 304 (311)
T ss_pred -CCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEeccc
Confidence 999999999999999999999999999998 79999999999987666665 55688887664
No 99
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.8e-23 Score=231.97 Aligned_cols=506 Identities=15% Similarity=0.215 Sum_probs=320.6
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCc-eEEEEEcCCCcEEEEe-cCCCee
Q 001184 413 SRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQ-LCIVTCGDDKLIRVWD-LSGRKL 490 (1130)
Q Consensus 413 ~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~-l~l~s~s~d~~v~iwd-~~~~~~ 490 (1130)
..-.||+|+++++.... ..|.||...+|.++. .+.+|..++..+.+.|.... .++++++.||.|++|| ..+..+
T Consensus 20 ~~avfSnD~k~l~~~~~-~~V~VyS~~Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Ll 95 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLCTG-NFVKVYSTATGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELL 95 (792)
T ss_pred cccccccCCcEEEEeeC-CEEEEEecchHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEE
Confidence 34569999999987764 579999999999887 68999999999999987663 3788999999999999 888888
Q ss_pred eEecCCCcCEEEEeecc------------cCCccEEEEEecC--CcEEEEEccCCccee-eecCCCccEEEEEEecCCCe
Q 001184 491 FQFEGHEAPVYSVCPHQ------------KENIHFIFSTAVD--GKIKAWLYDNVGSRV-DYDAPGLWCTTMLYSADGSR 555 (1130)
Q Consensus 491 ~~~~~h~~~v~~~~~~~------------~~~~~~l~s~s~d--g~i~vwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~ 555 (1130)
+++..+. ++..+.+.+ ..+-..+.+.+.+ ++++-+.+.+..... .+......-.++.+++.|.+
T Consensus 96 kt~~~~~-~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~ 174 (792)
T KOG1963|consen 96 KTFDNNL-PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEF 174 (792)
T ss_pred EEEecCC-ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceE
Confidence 8876433 333332211 1111111111111 111112211111000 01111111467888898988
Q ss_pred EEEeeecCCCCcEEEEeeCCCCce---eEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCC--CceeEEEeccC
Q 001184 556 LFSCGTSKEGDSHLVEWNESEGAL---KRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN--VNMLTSTEAEG 630 (1130)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~--~~~~~~~~~~~ 630 (1130)
.+.+. +..+.+|+...+.. .+....++...+++.+++|+++++++|..||+|.+|.--. +........|-
T Consensus 175 ~~i~~-----~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHW 249 (792)
T KOG1963|consen 175 KGIVH-----MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHW 249 (792)
T ss_pred EEEEE-----eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEe
Confidence 87776 56788998877541 1112223443578999999999999999999999996443 33333333444
Q ss_pred CCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCC
Q 001184 631 GLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSS 710 (1130)
Q Consensus 631 ~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~ 710 (1130)
|...|.+++|+++|.+|.+|+..|.+.+|.+.++.+. |-|.
T Consensus 250 H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kq----------------------------fLPR----------- 290 (792)
T KOG1963|consen 250 HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQ----------------------------FLPR----------- 290 (792)
T ss_pred cccccceeEEecCCceEeecccceEEEEEeecCCCcc----------------------------cccc-----------
Confidence 5558999999999999999999999999998877210 1111
Q ss_pred CCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCe
Q 001184 711 PARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGV 790 (1130)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~ 790 (1130)
-.+.|..+.++||+........
T Consensus 291 -------------------------------------------------------Lgs~I~~i~vS~ds~~~sl~~~--- 312 (792)
T KOG1963|consen 291 -------------------------------------------------------LGSPILHIVVSPDSDLYSLVLE--- 312 (792)
T ss_pred -------------------------------------------------------cCCeeEEEEEcCCCCeEEEEec---
Confidence 2233444444444444444444
Q ss_pred EEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEeCCeEEEEECCCceeEEEE
Q 001184 791 QKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTF 870 (1130)
Q Consensus 791 i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~ 870 (1130)
|+.|.+....+.+...++
T Consensus 313 --------------------------------------------------------------DNqI~li~~~dl~~k~tI 330 (792)
T KOG1963|consen 313 --------------------------------------------------------------DNQIHLIKASDLEIKSTI 330 (792)
T ss_pred --------------------------------------------------------------CceEEEEeccchhhhhhc
Confidence 455555544443333332
Q ss_pred eC-----------CCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEe-----------cCCCCeeEEEEccC
Q 001184 871 MS-----------PPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLK-----------GHQKHITGLAFSTN 928 (1130)
Q Consensus 871 ~~-----------~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~-----------~h~~~V~~l~~s~d 928 (1130)
.+ ..+-.+.++++| ....++..+..|.|++||+.+.+.+..+. .+.-.|++++.+-.
T Consensus 331 sgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~ 409 (792)
T KOG1963|consen 331 SGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRF 409 (792)
T ss_pred cCccCCCccccccccccceeEEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhcc
Confidence 22 123356788888 56667778899999999999877665543 12335788888989
Q ss_pred CCeEEEEeC--------CC--cEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCc-EEE-EEcCCcEEEEECCCc
Q 001184 929 LNILVSSGS--------DA--QLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQV-RLL-VNHETQLAIYDGSKM 996 (1130)
Q Consensus 929 g~~L~s~s~--------Dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~-~~~d~~i~v~d~~~~ 996 (1130)
|.++++.-. || .+++|-.......-.....+...|....+..+..++... .++ ++.|+.+++|-..+.
T Consensus 410 gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~ 489 (792)
T KOG1963|consen 410 GSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDD 489 (792)
T ss_pred ceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecc
Confidence 999998753 33 488999887666555555555555444444444444433 444 478999999998432
Q ss_pred eeeee-------eecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCC-cccccccCCCcccccCCCCCceeeeEEE
Q 001184 997 ECIRQ-------WVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADS-LRLRCRIAPSAYMSQASPNSQTVFPLVV 1068 (1130)
Q Consensus 997 ~~~~~-------~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1068 (1130)
+-+.. ...+..|..++++.+||.||..|+++. |++|.+||..+ .++.+........ +.+-.. .
T Consensus 490 ~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~-~~~Itiwd~~~~~~l~~~~~~~~~~-----~~~~~~---~ 560 (792)
T KOG1963|consen 490 SNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSF-DDTITIWDYDTKNELLCTEGSRNWP-----IAELLF---T 560 (792)
T ss_pred cccCcCccceEEeeeeccccCcccchhhcCCCcEEEEec-CCEEEEecCCChhhhhccccccccc-----hHhHhh---h
Confidence 22111 111224588999999999998777665 88999999999 4444444322211 111111 1
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEeCCCCccCC
Q 001184 1069 TSHPQEPNQLAVGLTDGSVKVIEPSETERKW 1099 (1130)
Q Consensus 1069 ~~~~~~~~~l~s~~~Dg~v~vW~~~~~~~~w 1099 (1130)
+-.+. ...++....+.+.+|++.+....|
T Consensus 561 ~~~~~--~~~~~~~~~~~l~~WNll~~~l~w 589 (792)
T KOG1963|consen 561 AQTQN--DGALVHATQQRLSVWNLLSMSLIW 589 (792)
T ss_pred ccccc--ccceeeccCceEehHhhhhhheec
Confidence 11111 234444557789999999999999
No 100
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.2e-25 Score=245.27 Aligned_cols=274 Identities=18% Similarity=0.234 Sum_probs=211.9
Q ss_pred CCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCC------C------------------CCc-cccccc--------
Q 001184 765 DSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQ------N------------------PSG-KATAAV-------- 811 (1130)
Q Consensus 765 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~------~------------------~~~-~~~~~~-------- 811 (1130)
.|.+.|.++-|++||++||++|.|+.|+||.+...+. . ... +.....
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 5999999999999999999999999999999876110 0 000 000000
Q ss_pred -ccccccCCCCcceecc--CCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCC
Q 001184 812 -APQHWQPSNGLLMTND--VPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDN 887 (1130)
Q Consensus 812 -~~~~w~~~~~~~~~~~--~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~ 887 (1130)
...+.......+.... ...+|...|..+.||.++- |++++ |.+|+||++...+|++.|. |.+-|+|++|+|.|.
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~f-LLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDD 422 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNF-LLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDD 422 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccCCe-eEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCC
Confidence 0011111111111111 1238999999999998874 55555 9999999999999999997 899999999999999
Q ss_pred cEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCC--CC
Q 001184 888 NIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGK--LP 965 (1130)
Q Consensus 888 ~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~--~~ 965 (1130)
+++++|+-||.|+||++...+.+.-...+ .-|++++|+|||+..+.|+.+|.+++|+....+......+...... ..
T Consensus 423 ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~ 501 (712)
T KOG0283|consen 423 RYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQG 501 (712)
T ss_pred CcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccC
Confidence 99999999999999999988877655544 7799999999999999999999999999998766555444433222 11
Q ss_pred CCeEEEEEcCCCc--EEEEEcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcc
Q 001184 966 VGETRVQFHSDQV--RLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLR 1042 (1130)
Q Consensus 966 ~~v~~~~~s~d~~--~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~ 1042 (1130)
..|+.+.|.|... .|+++.|..|||||..+..++..+.+.....+ -....|+.||++|+++++|..|+||++....
T Consensus 502 ~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~S-Q~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 502 KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSS-QISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred ceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCc-ceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 3699999987544 88889999999999999899888887755333 4567899999999999999999999985433
No 101
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=6.5e-25 Score=226.70 Aligned_cols=285 Identities=15% Similarity=0.243 Sum_probs=232.8
Q ss_pred CccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCC
Q 001184 766 SASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKND 845 (1130)
Q Consensus 766 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg 845 (1130)
..+.|.+++|+|...+=++....-.+.+|+...... ... + ......+.+++|-.||
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~----------------------~k~-~-srFk~~v~s~~fR~DG 80 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSV----------------------RKT-F-SRFKDVVYSVDFRSDG 80 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecchhhh----------------------hhh-H-HhhccceeEEEeecCC
Confidence 667899999999877666666666777776433111 000 0 1257789999999999
Q ss_pred CEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEE
Q 001184 846 SYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLA 924 (1130)
Q Consensus 846 ~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~ 924 (1130)
+++|+|+ .|.|+|||+.+...++.+.+|..++..+.|+|+++.++++|++|+.+++||+.+......+.+|++.|.+.+
T Consensus 81 ~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~ 160 (487)
T KOG0310|consen 81 RLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGD 160 (487)
T ss_pred eEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeec
Confidence 9999998 699999998888888999999999999999999999999999999999999999988778999999999999
Q ss_pred EccCC-CeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCcee-eeee
Q 001184 925 FSTNL-NILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMEC-IRQW 1002 (1130)
Q Consensus 925 ~s~dg-~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~-~~~~ 1002 (1130)
|+|-. ..++|||.||.|++||+.... ..... ..+..+|..+.+-|.|..++++....++|||+.+|.. +...
T Consensus 161 ~~~~~~hivvtGsYDg~vrl~DtR~~~---~~v~e---lnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~ 234 (487)
T KOG0310|consen 161 ISPANDHIVVTGSYDGKVRLWDTRSLT---SRVVE---LNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSM 234 (487)
T ss_pred cccCCCeEEEecCCCceEEEEEeccCC---ceeEE---ecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhh
Confidence 99964 488999999999999998842 11122 2334789999999999999999999999999996554 4444
Q ss_pred ecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEe
Q 001184 1003 VPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGL 1082 (1130)
Q Consensus 1003 ~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 1082 (1130)
..| ...|+|+++..|+..|++|+.|+.|+|||+.+.+.+..+..+. .+++++-+| ++..++.|.
T Consensus 235 ~~H---~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~------------pvLsiavs~-dd~t~viGm 298 (487)
T KOG0310|consen 235 FNH---NKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPG------------PVLSIAVSP-DDQTVVIGM 298 (487)
T ss_pred hcc---cceEEEEEeecCCceEeecccccceEEEEccceEEEEeeeccc------------ceeeEEecC-CCceEEEec
Confidence 334 7899999999999999999999999999999999888776332 245566667 567899999
Q ss_pred CCCcEEEEeCCCCc
Q 001184 1083 TDGSVKVIEPSETE 1096 (1130)
Q Consensus 1083 ~Dg~v~vW~~~~~~ 1096 (1130)
.+|.+.+=+...++
T Consensus 299 snGlv~~rr~~~k~ 312 (487)
T KOG0310|consen 299 SNGLVSIRRREVKK 312 (487)
T ss_pred ccceeeeehhhccc
Confidence 99988777555444
No 102
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=5.9e-24 Score=241.08 Aligned_cols=255 Identities=12% Similarity=0.115 Sum_probs=192.9
Q ss_pred EeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCC-CCEEEEEeCCCeEEEEEecCCcc-
Q 001184 366 GCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD-GNFIGVAFTKHLIHLYTYQGSND- 443 (1130)
Q Consensus 366 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd-g~~las~~~d~~i~vwd~~~~~~- 443 (1130)
|+.++.|++|+......+. .+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++..
T Consensus 50 GG~~gvI~L~~~~r~~~v~-------------------~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~ 110 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVI-------------------KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDES 110 (568)
T ss_pred CCceeEEEeeecCCCceEE-------------------EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcc
Confidence 4556777777765443322 57899999999999997 78999999999999999986432
Q ss_pred c----eeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEe
Q 001184 444 L----CQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTA 518 (1130)
Q Consensus 444 ~----~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s 518 (1130)
. .....+.+|...|.+++|+|++.. ++++++.|++|+||| .+++.+..+. |...|.+++|++ +|.+|++++
T Consensus 111 ~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slswsp--dG~lLat~s 186 (568)
T PTZ00420 111 VKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNI--KGNLLSGTC 186 (568)
T ss_pred ccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECC--CCCEEEEEe
Confidence 1 122357899999999999999874 568999999999999 7777777775 668899999965 567999999
Q ss_pred cCCcEEEEEccCCcceeeecCCCccEEE-----EEEecCCCeEEEeeecCCCCcEEEEeeCCC-CceeEEEecccCce-e
Q 001184 519 VDGKIKAWLYDNVGSRVDYDAPGLWCTT-----MLYSADGSRLFSCGTSKEGDSHLVEWNESE-GALKRTYIGFRKKS-A 591 (1130)
Q Consensus 519 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~-----~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~-v 591 (1130)
.|+.|++||++++.....+..|...+.+ ..|++++.++++++.+...+++|++||++. ++++..+..+.... +
T Consensus 187 ~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L 266 (568)
T PTZ00420 187 VGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPL 266 (568)
T ss_pred cCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccce
Confidence 9999999999998888888888764432 335689999999886544456899999985 55665554332222 2
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCC
Q 001184 592 GVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEG 644 (1130)
Q Consensus 592 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~ 644 (1130)
......+++.++++|+.|+.|++|++..+. +..+.......++.+++|.|..
T Consensus 267 ~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 267 IPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeecccccCCCccceEEcccc
Confidence 223334557889999999999999998774 3344433344577889999854
No 103
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=8.4e-25 Score=223.95 Aligned_cols=252 Identities=19% Similarity=0.249 Sum_probs=214.3
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeee-------------ee--ecCCCCeeEEEEecCCCc
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSL-------------EI--DAHVGGVNDLAFSYPNKQ 468 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~-------------~~--~~h~~~V~~i~~s~d~~~ 468 (1130)
....|.-.|.||+++||+++..+++.+++|.=|++.+|+..+... .. .+|...+.+++.|+||+
T Consensus 137 ~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk- 215 (479)
T KOG0299|consen 137 VIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK- 215 (479)
T ss_pred eeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc-
Confidence 366899999999999999999999999999999998887431110 01 37889999999999999
Q ss_pred eEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEE
Q 001184 469 LCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTM 547 (1130)
Q Consensus 469 l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~ 547 (1130)
+|++|+.|..|.||+ .+.+.++.+.+|.+.|.+++|.... ..+++++.|+.|++|+++......++.+|...|.++
T Consensus 216 -ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt--~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I 292 (479)
T KOG0299|consen 216 -YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGT--SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGI 292 (479)
T ss_pred -EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCc--cceeeeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence 899999999999999 9999999999999999999996544 579999999999999999988888999999999999
Q ss_pred EEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEe
Q 001184 548 LYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTE 627 (1130)
Q Consensus 548 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 627 (1130)
....-++.+-+++. |.++++|++. ......|.++.. .+.|++|-.+ ..+++|+.+|.|.+|++...+++.+..
T Consensus 293 daL~reR~vtVGgr----DrT~rlwKi~-eesqlifrg~~~-sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~ 365 (479)
T KOG0299|consen 293 DALSRERCVTVGGR----DRTVRLWKIP-EESQLIFRGGEG-SIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSR 365 (479)
T ss_pred chhcccceEEeccc----cceeEEEecc-ccceeeeeCCCC-CeeeEEEecc-cceeeccCCceEEEeeecccCceeEee
Confidence 98888888777766 9999999994 344456666544 7888888754 689999999999999999988877654
Q ss_pred ccCC----------CCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCch
Q 001184 628 AEGG----------LPSLPRLRFNKEGNLLVVTTADQGIKILANADGLR 666 (1130)
Q Consensus 628 ~~~~----------~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 666 (1130)
...+ ...|++++..|...++|+|+.+|.|++|.+.++.+
T Consensus 366 ~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r 414 (479)
T KOG0299|consen 366 LAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLR 414 (479)
T ss_pred ccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcc
Confidence 3211 12688999999999999999999999999988854
No 104
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=5.1e-25 Score=249.11 Aligned_cols=262 Identities=20% Similarity=0.337 Sum_probs=222.6
Q ss_pred CCCCcccccCCcccceeeeccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeee
Q 001184 325 PSQQATWSLDDLPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAI 404 (1130)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1130)
++.+..|+............+|.+.|++++|..-+. +|++|+.|.+++|||..+|++.. +
T Consensus 227 ~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~-~lvsgS~D~t~rvWd~~sg~C~~-------------------~ 286 (537)
T KOG0274|consen 227 DSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGD-KLVSGSTDKTERVWDCSTGECTH-------------------S 286 (537)
T ss_pred CceeEEeecccceEEEeeccCCCCCceeEEEecCCC-EEEEEecCCcEEeEecCCCcEEE-------------------E
Confidence 334546665554444444567999999999998444 79999999999999999999987 6
Q ss_pred ecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe
Q 001184 405 VKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD 484 (1130)
Q Consensus 405 ~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd 484 (1130)
+.+|.+.|.++..-+ .++++|+.|.+|++|++.++.++. .+.+|.++|.++... +. ++++|+.|++|++||
T Consensus 287 l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~l~---l~~~h~~~V~~v~~~--~~--~lvsgs~d~~v~VW~ 357 (537)
T KOG0274|consen 287 LQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGACLN---LLRGHTGPVNCVQLD--EP--LLVSGSYDGTVKVWD 357 (537)
T ss_pred ecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcceEE---EeccccccEEEEEec--CC--EEEEEecCceEEEEE
Confidence 889999999988754 578889999999999999998776 566799999999998 55 899999999999999
Q ss_pred -cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCC-cceeeecCCCccEEEEEEecCCCeEEEeeec
Q 001184 485 -LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNV-GSRVDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1130)
Q Consensus 485 -~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1130)
.++++++.+.+|...|.++.+... ..+++|+.|++|++||+++. ++...+..|..-+..+. ..+++|++++.
T Consensus 358 ~~~~~cl~sl~gH~~~V~sl~~~~~---~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~--~~~~~Lvs~~a- 431 (537)
T KOG0274|consen 358 PRTGKCLKSLSGHTGRVYSLIVDSE---NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLL--LRDNFLVSSSA- 431 (537)
T ss_pred hhhceeeeeecCCcceEEEEEecCc---ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccc--cccceeEeccc-
Confidence 999999999999999999977432 68999999999999999999 88889998888775544 45788999886
Q ss_pred CCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEE
Q 001184 563 KEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTST 626 (1130)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 626 (1130)
|+.|++||..++++++.+.+.+...+..+++. ...+++++.||.+++||+++++....+
T Consensus 432 ---D~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 432 ---DGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred ---cccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence 89999999999999999998533467777665 468999999999999999999887765
No 105
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=2.8e-24 Score=243.55 Aligned_cols=248 Identities=16% Similarity=0.229 Sum_probs=199.8
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccc----------eeeeeeecCCCCeeEEEEec-CCCceEEEEEcCC
Q 001184 409 SISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDL----------CQSLEIDAHVGGVNDLAFSY-PNKQLCIVTCGDD 477 (1130)
Q Consensus 409 ~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~----------~~~~~~~~h~~~V~~i~~s~-d~~~l~l~s~s~d 477 (1130)
-..|.....++|+..+++++.+.....|+..++..+ .....+.+|.+.|.+++|+| +++ +|++|+.|
T Consensus 20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~--~LaSgS~D 97 (493)
T PTZ00421 20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQ--KLFTASED 97 (493)
T ss_pred eeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCC--EEEEEeCC
Confidence 345666777788777777777777777876554322 11224789999999999999 777 89999999
Q ss_pred CcEEEEe-cCC-------CeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEE
Q 001184 478 KLIRVWD-LSG-------RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLY 549 (1130)
Q Consensus 478 ~~v~iwd-~~~-------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 549 (1130)
++|++|| .++ ..+..+.+|...|.+++|+|.. ..+|++++.|++|++||+++......+..|...|.+++|
T Consensus 98 gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~-~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~ 176 (493)
T PTZ00421 98 GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA-MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEW 176 (493)
T ss_pred CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC-CCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEE
Confidence 9999999 443 3567889999999999998754 368999999999999999998888888889999999999
Q ss_pred ecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEe----CCCcEEEEeCCCCc-eeE
Q 001184 550 SADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAG----EDNQIKFWDMDNVN-MLT 624 (1130)
Q Consensus 550 s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~vwd~~~~~-~~~ 624 (1130)
+|+|.+|++++. |+.|++||+++++.+..+.+|.......+.|.+++..+++++ .|+.|++||+++.. .+.
T Consensus 177 spdG~lLatgs~----Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~ 252 (493)
T PTZ00421 177 NLDGSLLCTTSK----DKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYS 252 (493)
T ss_pred ECCCCEEEEecC----CCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCcee
Confidence 999999999986 999999999999999999888765556678888888888765 47899999998754 333
Q ss_pred EEeccCCCCCcceEEEcCCCCEEEEEe-CCCcEEEEEcCCC
Q 001184 625 STEAEGGLPSLPRLRFNKEGNLLVVTT-ADQGIKILANADG 664 (1130)
Q Consensus 625 ~~~~~~~~~~i~~v~~s~~~~~l~~~~-~dg~i~iw~~~~~ 664 (1130)
....+ ....+....|++++++|++++ .|+.|++||+.++
T Consensus 253 ~~~~d-~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 253 TVDLD-QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred EeccC-CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 33322 223456678999999999887 5999999999876
No 106
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=5.5e-25 Score=213.28 Aligned_cols=296 Identities=13% Similarity=0.197 Sum_probs=241.6
Q ss_pred cceeeec-cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEE
Q 001184 338 RAVACTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVA 416 (1130)
Q Consensus 338 ~~~~~~~-~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 416 (1130)
..+.+.+ +|++.|+.|+-..... ++.+++.|.+.+||.+++|.++. .+.||.+.|++++
T Consensus 138 ~~lvre~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~-------------------~Y~GH~GSVNsik 197 (481)
T KOG0300|consen 138 FRLVRELEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLA-------------------TYTGHTGSVNSIK 197 (481)
T ss_pred EeehhhhcccccceeeehhhcCCc-ceeecccccceeEEeecccccee-------------------eecccccceeeEE
Confidence 3455555 5999999999887766 89999999999999999999987 4789999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEe------cC--------C----------------------ccc-eeeeeeecCCCCeeE
Q 001184 417 WSPDGNFIGVAFTKHLIHLYTY------QG--------S----------------------NDL-CQSLEIDAHVGGVND 459 (1130)
Q Consensus 417 ~spdg~~las~~~d~~i~vwd~------~~--------~----------------------~~~-~~~~~~~~h~~~V~~ 459 (1130)
|++.+.++++++.|++..||.. .. + -.+ .+...+.+|.+.|.+
T Consensus 198 fh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a 277 (481)
T KOG0300|consen 198 FHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA 277 (481)
T ss_pred eccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe
Confidence 9999999999999999999972 11 0 001 133567899999999
Q ss_pred EEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCc-ceeee
Q 001184 460 LAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVG-SRVDY 537 (1130)
Q Consensus 460 i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~-~~~~~ 537 (1130)
..|...|+ .+++++.|.+..+|| .+|..+..+.||....+.++-+|.. .++++.+.|.+.++||++..- ....|
T Consensus 278 ~dWL~gg~--Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQ--rLVvTsSrDtTFRLWDFReaI~sV~VF 353 (481)
T KOG0300|consen 278 CDWLAGGQ--QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQ--RLVVTSSRDTTFRLWDFREAIQSVAVF 353 (481)
T ss_pred hhhhcCcc--eeeeeeccccceeeeeccCceeccccCcchhccccccCCcc--eEEEEeccCceeEeccchhhcceeeee
Confidence 99999999 699999999999999 9999999999999999999887654 799999999999999998543 34578
Q ss_pred cCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCc-eeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001184 538 DAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA-LKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWD 616 (1130)
Q Consensus 538 ~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 616 (1130)
.+|...|+++.|..+.+ +++++. |.+|++||+++.+ ++.++. .+..++.++++..++.|+.--++..|++||
T Consensus 354 QGHtdtVTS~vF~~dd~-vVSgSD----DrTvKvWdLrNMRsplATIR--tdS~~NRvavs~g~~iIAiPhDNRqvRlfD 426 (481)
T KOG0300|consen 354 QGHTDTVTSVVFNTDDR-VVSGSD----DRTVKVWDLRNMRSPLATIR--TDSPANRVAVSKGHPIIAIPHDNRQVRLFD 426 (481)
T ss_pred cccccceeEEEEecCCc-eeecCC----CceEEEeeeccccCcceeee--cCCccceeEeecCCceEEeccCCceEEEEe
Confidence 99999999999998764 566654 8999999998754 455555 344788899998888888888999999999
Q ss_pred CCCCceeEEE--eccCCCCCcceEEEcCCC--CEEEEEeCCCcEEEEEcCCC
Q 001184 617 MDNVNMLTST--EAEGGLPSLPRLRFNKEG--NLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 617 ~~~~~~~~~~--~~~~~~~~i~~v~~s~~~--~~l~~~~~dg~i~iw~~~~~ 664 (1130)
++..++.... ...++..-|.|++|..+. .-|++++.|..+.-|.+...
T Consensus 427 lnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 427 LNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred cCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 9765433221 233455578999998653 35788999999999988654
No 107
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=1.5e-24 Score=232.83 Aligned_cols=281 Identities=16% Similarity=0.303 Sum_probs=237.1
Q ss_pred eeeec-cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEE-EEE
Q 001184 340 VACTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSR-VAW 417 (1130)
Q Consensus 340 ~~~~~-~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-v~~ 417 (1130)
+.+.+ +|...|..+++.++. .++++|+||++++|+-..++.+.. +.+.+|.+.|.+ +++
T Consensus 6 ls~~l~gH~~DVr~v~~~~~~--~i~s~sRd~t~~vw~~~~~~~l~~-----------------~~~~~~~g~i~~~i~y 66 (745)
T KOG0301|consen 6 LSHELEGHKSDVRAVAVTDGV--CIISGSRDGTVKVWAKKGKQYLET-----------------HAFEGPKGFIANSICY 66 (745)
T ss_pred eEEEeccCccchheeEecCCe--EEeecCCCCceeeeeccCcccccc-----------------eecccCcceeecccee
Confidence 44555 499999999998877 489999999999999876665432 246688888888 888
Q ss_pred cC-CCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEecCC
Q 001184 418 SP-DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGH 496 (1130)
Q Consensus 418 sp-dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~~h 496 (1130)
-+ |+-.|++|+.|.+|.+|...+...+. .+.+|...|.+++...++. ++|||.|.++++|- .+++...+.+|
T Consensus 67 ~e~~~~~l~~g~~D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW~-~~~l~~~l~gH 139 (745)
T KOG0301|consen 67 AESDKGRLVVGGMDTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVWR-IGELVYSLQGH 139 (745)
T ss_pred ccccCcceEeecccceEEEEecCCCCchh---hhhccccceeeeecCCcCc---eEecccccceEEec-chhhhcccCCc
Confidence 86 55579999999999999999877554 7899999999999887775 89999999999998 34566679999
Q ss_pred CcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCC
Q 001184 497 EAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE 576 (1130)
Q Consensus 497 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1130)
...|+++..-+.. .++|||.|.+|++|.- ++...++.+|...|+.+++-+++. +++|+. ||.|++|++ +
T Consensus 140 ~asVWAv~~l~e~---~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScsN----Dg~Ir~w~~-~ 208 (745)
T KOG0301|consen 140 TASVWAVASLPEN---TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSN----DGSIRLWDL-D 208 (745)
T ss_pred chheeeeeecCCC---cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeecC----CceEEEEec-c
Confidence 9999999876543 8999999999999965 567778899999999999998865 456654 999999998 7
Q ss_pred CceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcE
Q 001184 577 GALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGI 656 (1130)
Q Consensus 577 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i 656 (1130)
|..+..+.+|.. -+.++....++..++++++|++++||+.. ++.+.+..+.. .|.++.+-++|. +++|+.||.|
T Consensus 209 ge~l~~~~ghtn-~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt--siWsa~~L~NgD-Ivvg~SDG~V 282 (745)
T KOG0301|consen 209 GEVLLEMHGHTN-FVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT--SIWSAKVLLNGD-IVVGGSDGRV 282 (745)
T ss_pred Cceeeeeeccce-EEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCcc--ceEEEEEeeCCC-EEEeccCceE
Confidence 999999999877 78889888888899999999999999986 77888877654 688998888886 7789999999
Q ss_pred EEEEcCC
Q 001184 657 KILANAD 663 (1130)
Q Consensus 657 ~iw~~~~ 663 (1130)
|||....
T Consensus 283 rVfT~~k 289 (745)
T KOG0301|consen 283 RVFTVDK 289 (745)
T ss_pred EEEEecc
Confidence 9998763
No 108
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.93 E-value=9.2e-26 Score=227.41 Aligned_cols=247 Identities=19% Similarity=0.283 Sum_probs=209.7
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iw 483 (1130)
.+..|.+.|..+.|-++...|++|+.|..|++|++..++ .....++.|..+.|+++.|.++++ .+++++.|+.+++|
T Consensus 170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~--~~iAas~d~~~r~W 246 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNK--HVIAASNDKNLRLW 246 (459)
T ss_pred hhhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCc--eEEeecCCCceeee
Confidence 367899999999999999999999999999999998876 333446888899999999999999 78999999999999
Q ss_pred e-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeec
Q 001184 484 D-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1130)
Q Consensus 484 d-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1130)
+ .+.+...+|.||++.|+++.|.... ..+++|+.|.+|+.||+....+..+.. ....+..++.+ ...++++..
T Consensus 247 nvd~~r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~- 320 (459)
T KOG0288|consen 247 NVDSLRLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHF- 320 (459)
T ss_pred eccchhhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeeccc-
Confidence 9 8889999999999999999886543 349999999999999998866655433 23345555554 445666655
Q ss_pred CCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCC--CCCcceEEE
Q 001184 563 KEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGG--LPSLPRLRF 640 (1130)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~--~~~i~~v~~ 640 (1130)
|++|+.||.++..+......+. .|+++..++++..+.+.+.|.++.+.|+.+.+....+...+. ....+.+.|
T Consensus 321 ---DkkvRfwD~Rs~~~~~sv~~gg--~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvf 395 (459)
T KOG0288|consen 321 ---DKKVRFWDIRSADKTRSVPLGG--RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVF 395 (459)
T ss_pred ---ccceEEEeccCCceeeEeecCc--ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEE
Confidence 8889999999999998888643 799999999999999999999999999999998888766532 224788999
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 641 NKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 641 s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
||++.|+++|+.||.|+||++.++
T Consensus 396 Spd~~YvaAGS~dgsv~iW~v~tg 419 (459)
T KOG0288|consen 396 SPDGSYVAAGSADGSVYIWSVFTG 419 (459)
T ss_pred CCCCceeeeccCCCcEEEEEccCc
Confidence 999999999999999999999877
No 109
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=3.2e-21 Score=214.19 Aligned_cols=277 Identities=17% Similarity=0.218 Sum_probs=223.4
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEE
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 424 (1130)
.|..+-+.++|.|+|. +|.+++.||.|++|+....+.... ++.-+...|.+++-. +.+|
T Consensus 11 aht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P~------------------ti~~~g~~v~~ia~~--s~~f 69 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEPE------------------TIDISGELVSSIACY--SNHF 69 (933)
T ss_pred hccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCCc------------------hhhccCceeEEEeec--ccce
Confidence 4888999999999999 689999999999999876532110 122366677777764 4599
Q ss_pred EEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEE
Q 001184 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSV 503 (1130)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~ 503 (1130)
++|+.+++|.+|...+++.-. .+..-+-++++++|+.+|+ +++.||.|-.|++-+ .+......+++|.++|.++
T Consensus 70 ~~~s~~~tv~~y~fps~~~~~---iL~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l 144 (933)
T KOG1274|consen 70 LTGSEQNTVLRYKFPSGEEDT---ILARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQL 144 (933)
T ss_pred EEeeccceEEEeeCCCCCccc---eeeeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchheeecccCCceeee
Confidence 999999999999998876432 2344567899999999999 899999999999999 8888999999999999999
Q ss_pred eecccCCccEEEEEecCCcEEEEEccCCcceeeecC-------C-CccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCC
Q 001184 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA-------P-GLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES 575 (1130)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-------~-~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1130)
.|+| ++.+|++.+.||.|++||+.++.....+.. . ...+..++|+|+|..+++.+. ++.|.+|+..
T Consensus 145 ~~~p--~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~----d~~Vkvy~r~ 218 (933)
T KOG1274|consen 145 SYDP--KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV----DNTVKVYSRK 218 (933)
T ss_pred eEcC--CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc----CCeEEEEccC
Confidence 9965 558999999999999999998776654432 2 346788999999777776665 8999999999
Q ss_pred CCceeEEEecccCc-eeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCC
Q 001184 576 EGALKRTYIGFRKK-SAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQ 654 (1130)
Q Consensus 576 ~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg 654 (1130)
+......+...... .+.++.|+|.|+|||+++.||.|.|||.++-.. |.....|++++|.|+.+.+-.-...|
T Consensus 219 ~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~~~~~~Vc~~aw~p~~n~it~~~~~g 292 (933)
T KOG1274|consen 219 GWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER------HEFKRAVCCEAWKPNANAITLITALG 292 (933)
T ss_pred CceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh------ccccceeEEEecCCCCCeeEEEeecc
Confidence 99888877654433 388899999999999999999999999998222 33344799999999988776666666
Q ss_pred cEEEE
Q 001184 655 GIKIL 659 (1130)
Q Consensus 655 ~i~iw 659 (1130)
...+|
T Consensus 293 ~~~~~ 297 (933)
T KOG1274|consen 293 TLGVS 297 (933)
T ss_pred ccccC
Confidence 55554
No 110
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=6.5e-25 Score=233.55 Aligned_cols=294 Identities=21% Similarity=0.284 Sum_probs=238.0
Q ss_pred CCCCEE---EEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCC
Q 001184 346 QGSSVV---SMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN 422 (1130)
Q Consensus 346 h~~~V~---~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~ 422 (1130)
|...|. ++..++.+.++|++|+.||.|++|++.........+ -...+..|..+|..++...+|+
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~-------------~~asme~HsDWVNDiiL~~~~~ 86 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTP-------------YIASMEHHSDWVNDIILCGNGK 86 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccc-------------hhhhhhhhHhHHhhHHhhcCCC
Confidence 444555 556665444469999999999999987544321111 0114778999999999999999
Q ss_pred EEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEE-ecCCCceEEEEEcCCCcEEEEe-cCC--Ceee-------
Q 001184 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAF-SYPNKQLCIVTCGDDKLIRVWD-LSG--RKLF------- 491 (1130)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~-s~d~~~l~l~s~s~d~~v~iwd-~~~--~~~~------- 491 (1130)
.|++++.|-+|++|+...+. .....++..|.+.|.|+++ .++.. ++||||-|+.|.+|| ..| +.+.
T Consensus 87 tlIS~SsDtTVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~ 163 (735)
T KOG0308|consen 87 TLISASSDTTVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTATLVASFNNVTV 163 (735)
T ss_pred ceEEecCCceEEEeecccCc-chhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcchhhhhhcccccc
Confidence 99999999999999998874 1222367889999999999 66766 899999999999999 545 2222
Q ss_pred -Eec-CCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEE
Q 001184 492 -QFE-GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHL 569 (1130)
Q Consensus 492 -~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 569 (1130)
.+. |+...|++++.++ .+..+++|+..+.+++||.++...+..+.+|...|..+..+.||+.+++++. ||+|
T Consensus 164 ~sl~sG~k~siYSLA~N~--t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS----DgtI 237 (735)
T KOG0308|consen 164 NSLGSGPKDSIYSLAMNQ--TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS----DGTI 237 (735)
T ss_pred ccCCCCCccceeeeecCC--cceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCC----CceE
Confidence 233 8889999998754 5579999999999999999999999999999999999999999999999987 9999
Q ss_pred EEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEE
Q 001184 570 VEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVV 649 (1130)
Q Consensus 570 ~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~ 649 (1130)
++||+...+++.++..|.. .+.++..+|+-..+++|+.||.|+.=|+.+......+-...+ +|..+..+...+-+-+
T Consensus 238 rlWdLgqQrCl~T~~vH~e-~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~da--Pv~~l~~~~~~~~~Wv 314 (735)
T KOG0308|consen 238 RLWDLGQQRCLATYIVHKE-GVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDA--PVLKLHLHEHDNSVWV 314 (735)
T ss_pred EeeeccccceeeeEEeccC-ceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCC--chhhhhhccccCCcee
Confidence 9999999999999999888 599999999999999999999999999998543333332333 6777777765555678
Q ss_pred EeCCCcEEEEEcCCC
Q 001184 650 TTADQGIKILANADG 664 (1130)
Q Consensus 650 ~~~dg~i~iw~~~~~ 664 (1130)
++.|+.|+-|.....
T Consensus 315 tTtds~I~rW~~~~~ 329 (735)
T KOG0308|consen 315 TTTDSSIKRWKLEPD 329 (735)
T ss_pred eeccccceecCCccc
Confidence 889999999976543
No 111
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=4.2e-24 Score=207.85 Aligned_cols=247 Identities=20% Similarity=0.313 Sum_probs=180.0
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCC-----ccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCC
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGS-----NDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK 478 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~-----~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~ 478 (1130)
++++|...|++++||.||++||+++.|++|++|+++.- ++++.... -+.-+.++|+||-+. +++++-...
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve----~dhpT~V~FapDc~s-~vv~~~~g~ 155 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVE----YDHPTRVVFAPDCKS-VVVSVKRGN 155 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcccc----CCCceEEEECCCcce-EEEEEccCC
Confidence 68999999999999999999999999999999999752 22222211 234688999999986 677777788
Q ss_pred cEEEEec----CCCeeeEe---------cCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEE
Q 001184 479 LIRVWDL----SGRKLFQF---------EGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCT 545 (1130)
Q Consensus 479 ~v~iwd~----~~~~~~~~---------~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~ 545 (1130)
++++|.. +|.....+ +.|.-.+..+-. .+++.+|++++.|..|.+|++. ++....+......-+
T Consensus 156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGi--A~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~ 232 (420)
T KOG2096|consen 156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGI--AGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNY 232 (420)
T ss_pred EEEEEEeeecccCCCCcccccccccccchhcccceEEEee--cCCceEEEEecCCCcEEEEecC-Cceeeeecccccccc
Confidence 9999972 33322211 235556666544 5677899999999999999998 677777777666777
Q ss_pred EEEEecCCCeEEEeeecCCCCcEEEEeeCC---CC-----ceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001184 546 TMLYSADGSRLFSCGTSKEGDSHLVEWNES---EG-----ALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDM 617 (1130)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~---~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 617 (1130)
..+.+|+|+++++++. ...|.+|.+- .| ..+..+.||.. .|...+|+++..++++.+.||++++||.
T Consensus 233 ~aavSP~GRFia~~gF----TpDVkVwE~~f~kdG~fqev~rvf~LkGH~s-aV~~~aFsn~S~r~vtvSkDG~wriwdt 307 (420)
T KOG2096|consen 233 DAAVSPDGRFIAVSGF----TPDVKVWEPIFTKDGTFQEVKRVFSLKGHQS-AVLAAAFSNSSTRAVTVSKDGKWRIWDT 307 (420)
T ss_pred ceeeCCCCcEEEEecC----CCCceEEEEEeccCcchhhhhhhheeccchh-heeeeeeCCCcceeEEEecCCcEEEeec
Confidence 8899999999999987 5668999862 22 23456788766 8999999999999999999999999997
Q ss_pred CC----Cc---eeEEE--eccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 618 DN----VN---MLTST--EAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 618 ~~----~~---~~~~~--~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
+- ++ .++.. ..+........++.+|+|..||... ...+.++..+++
T Consensus 308 dVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g 362 (420)
T KOG2096|consen 308 DVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDG 362 (420)
T ss_pred cceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccC
Confidence 53 11 11111 1111111334677888887776553 446666665554
No 112
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=4.9e-24 Score=216.11 Aligned_cols=282 Identities=17% Similarity=0.204 Sum_probs=242.8
Q ss_pred CCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEE
Q 001184 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGV 426 (1130)
Q Consensus 347 ~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las 426 (1130)
...+.++...|... .+.+|+.|..+.++|..+++.+. +++||...|+.+.|+|+...+++
T Consensus 219 ~pgi~ald~~~s~~-~ilTGG~d~~av~~d~~s~q~l~-------------------~~~Gh~kki~~v~~~~~~~~v~~ 278 (506)
T KOG0289|consen 219 TPGITALDIIPSSS-KILTGGEDKTAVLFDKPSNQILA-------------------TLKGHTKKITSVKFHKDLDTVIT 278 (506)
T ss_pred CCCeeEEeecCCCC-cceecCCCCceEEEecchhhhhh-------------------hccCcceEEEEEEeccchhheee
Confidence 34788888888744 58999999999999999888776 68999999999999999999999
Q ss_pred EeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecC--CCcCEEEE
Q 001184 427 AFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEG--HEAPVYSV 503 (1130)
Q Consensus 427 ~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~--h~~~v~~~ 503 (1130)
++.|..|+||......+.. ....|..+|+.+...|.|. ||++++.|++..+.| .+|..+..... ..-.+++.
T Consensus 279 aSad~~i~vws~~~~s~~~---~~~~h~~~V~~ls~h~tge--YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~ 353 (506)
T KOG0289|consen 279 ASADEIIRVWSVPLSSEPT---SSRPHEEPVTGLSLHPTGE--YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSA 353 (506)
T ss_pred cCCcceEEeeccccccCcc---ccccccccceeeeeccCCc--EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEe
Confidence 9999999999998766443 5678999999999999999 899999999999999 88888766553 22357888
Q ss_pred eecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEE
Q 001184 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTY 583 (1130)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 583 (1130)
+||| ||.++.+|..|+.|++||+.+......|.+|..+|..++|+.+|-+|++++. |+.|++||++..+..+++
T Consensus 354 ~fHp--DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ad----d~~V~lwDLRKl~n~kt~ 427 (506)
T KOG0289|consen 354 AFHP--DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAAD----DGSVKLWDLRKLKNFKTI 427 (506)
T ss_pred eEcC--CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEec----CCeEEEEEehhhccccee
Confidence 8975 5589999999999999999999999999999999999999999999999985 788999999998888888
Q ss_pred ecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc--eeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001184 584 IGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVN--MLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1130)
Q Consensus 584 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~ 661 (1130)
.......+..+.|.+.|.+++.++.|=.|++++-.+.+ .+..+..+ .+..+.+.|....+++++++.|..++++.+
T Consensus 428 ~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~--sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 428 QLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADH--SGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhc--ccccceeeecccceEEeeccchhheEEeec
Confidence 87666679999999999999999887777777755443 44444433 346789999999999999999999988754
No 113
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=1.6e-25 Score=221.76 Aligned_cols=282 Identities=13% Similarity=0.195 Sum_probs=227.2
Q ss_pred ccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCE
Q 001184 344 MHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNF 423 (1130)
Q Consensus 344 ~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 423 (1130)
-+|.++|.|+|=+|..-..+|+|+.||.|+|||+...++.. .+..|.+.|..++++. ..
T Consensus 63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~-------------------~f~AH~G~V~Gi~v~~--~~ 121 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR-------------------TFKAHEGLVRGICVTQ--TS 121 (433)
T ss_pred cccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh-------------------eeecccCceeeEEecc--cc
Confidence 36999999999999873369999999999999999888775 5789999999999987 77
Q ss_pred EEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEE
Q 001184 424 IGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYS 502 (1130)
Q Consensus 424 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~ 502 (1130)
+++++.|++|+.|.+... .+ .++.+ ...+..|.-+..+. .++|||. .|.||| ....++..+.--...|.+
T Consensus 122 ~~tvgdDKtvK~wk~~~~-p~---~tilg-~s~~~gIdh~~~~~--~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~s 192 (433)
T KOG0268|consen 122 FFTVGDDKTVKQWKIDGP-PL---HTILG-KSVYLGIDHHRKNS--VFATCGE--QIDIWDEQRDNPVSSMSWGADSISS 192 (433)
T ss_pred eEEecCCcceeeeeccCC-cc---eeeec-cccccccccccccc--cccccCc--eeeecccccCCccceeecCCCceeE
Confidence 889999999999998873 22 23432 44567777766666 7889886 489999 778888888877788999
Q ss_pred EeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCC-ceeE
Q 001184 503 VCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG-ALKR 581 (1130)
Q Consensus 503 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~ 581 (1130)
+.|+|... .+|++++.|+.|.+||++.......... +...+.++|+|.+-.++++. +|..++.+|++.- .++.
T Consensus 193 vkfNpvET-sILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~----ED~nlY~~DmR~l~~p~~ 266 (433)
T KOG0268|consen 193 VKFNPVET-SILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAAN----EDHNLYTYDMRNLSRPLN 266 (433)
T ss_pred EecCCCcc-hheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeecc----ccccceehhhhhhcccch
Confidence 99988654 6888999999999999998877664432 23457899999666666664 4899999998764 4566
Q ss_pred EEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001184 582 TYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1130)
Q Consensus 582 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~ 661 (1130)
.+.+|.. .|..+.|+|.|+-+++|+.|.+|+||..+.+.--...- ......|.++.||-|.+++++|++|+.|++|..
T Consensus 267 v~~dhvs-AV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYh-tkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 267 VHKDHVS-AVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYH-TKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred hhcccce-eEEEeccCCCcchhccccccceEEEeecCCCcchhhhh-HhhhheeeEEEEeccccEEEecCCCcceeeeec
Confidence 6777655 89999999999999999999999999998765322221 122336899999999999999999999999986
Q ss_pred CC
Q 001184 662 AD 663 (1130)
Q Consensus 662 ~~ 663 (1130)
..
T Consensus 345 ~A 346 (433)
T KOG0268|consen 345 KA 346 (433)
T ss_pred ch
Confidence 54
No 114
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=1.2e-23 Score=205.15 Aligned_cols=268 Identities=18% Similarity=0.276 Sum_probs=214.4
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 425 (1130)
-.+.|+.+.|+|.+.. |++++-||++++||+...+... .-.|..++.+++|-+ ...++
T Consensus 12 P~d~IS~v~f~~~~~~-LLvssWDgslrlYdv~~~~l~~--------------------~~~~~~plL~c~F~d-~~~~~ 69 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSD-LLVSSWDGSLRLYDVPANSLKL--------------------KFKHGAPLLDCAFAD-ESTIV 69 (323)
T ss_pred ChhceeeEEEcCcCCc-EEEEeccCcEEEEeccchhhhh--------------------heecCCceeeeeccC-CceEE
Confidence 3578999999999986 5556699999999998765432 236788999999997 45788
Q ss_pred EEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecC-CCeeeEecCCCcCEEEEe
Q 001184 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLS-GRKLFQFEGHEAPVYSVC 504 (1130)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~-~~~~~~~~~h~~~v~~~~ 504 (1130)
+|+.||.|+.+|+.++.... +..|..+|.+|.+++... .+++||.|++|++||.. ......+. ....|.++.
T Consensus 70 ~G~~dg~vr~~Dln~~~~~~----igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~ 142 (323)
T KOG1036|consen 70 TGGLDGQVRRYDLNTGNEDQ----IGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMD 142 (323)
T ss_pred EeccCceEEEEEecCCccee----eccCCCceEEEEeeccCC--eEEEcccCccEEEEeccccccccccc-cCceEEEEe
Confidence 99999999999999987553 778999999999998777 79999999999999944 33344443 445888886
Q ss_pred ecccCCccEEEEEecCCcEEEEEccCCcceeeecC--CCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCC----c
Q 001184 505 PHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA--PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG----A 578 (1130)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~----~ 578 (1130)
. .++.|+.|+.|..+.+||+++......... -...+.++++-|++.-.++++. +|.|.+=..... .
T Consensus 143 v----~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSi----eGRVavE~~d~s~~~~s 214 (323)
T KOG1036|consen 143 V----SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSI----EGRVAVEYFDDSEEAQS 214 (323)
T ss_pred c----cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEee----cceEEEEccCCchHHhh
Confidence 5 346899999999999999998776653322 2337899999998888888776 788877555444 3
Q ss_pred eeEEEecccCc--------eeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEE
Q 001184 579 LKRTYIGFRKK--------SAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVT 650 (1130)
Q Consensus 579 ~~~~~~~~~~~--------~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~ 650 (1130)
....|+.|... +|++++|+|-.+.+++|+.||.|.+||+.+.+.+..+.... ..|..++|+.+|..||++
T Consensus 215 kkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~--~SI~slsfs~dG~~LAia 292 (323)
T KOG1036|consen 215 KKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYE--TSISSLSFSMDGSLLAIA 292 (323)
T ss_pred hceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCC--CceEEEEeccCCCeEEEE
Confidence 34456665432 68889999999999999999999999999999888876553 369999999999999999
Q ss_pred eC
Q 001184 651 TA 652 (1130)
Q Consensus 651 ~~ 652 (1130)
+.
T Consensus 293 ~s 294 (323)
T KOG1036|consen 293 SS 294 (323)
T ss_pred ec
Confidence 75
No 115
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=8e-25 Score=225.00 Aligned_cols=292 Identities=15% Similarity=0.217 Sum_probs=234.6
Q ss_pred ceeeeccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEc
Q 001184 339 AVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWS 418 (1130)
Q Consensus 339 ~~~~~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 418 (1130)
+.++++.|++-|.++++|...++ +++|+ .|-|+|||+....... ++. +.. .-....-|.++.++
T Consensus 411 rq~~tL~HGEvVcAvtIS~~trh-VyTgG-kgcVKVWdis~pg~k~--Pvs-----------qLd-cl~rdnyiRSckL~ 474 (705)
T KOG0639|consen 411 RQINTLAHGEVVCAVTISNPTRH-VYTGG-KGCVKVWDISQPGNKS--PVS-----------QLD-CLNRDNYIRSCKLL 474 (705)
T ss_pred HhhhhhccCcEEEEEEecCCcce-eEecC-CCeEEEeeccCCCCCC--ccc-----------ccc-ccCcccceeeeEec
Confidence 45667889999999999999986 88887 5689999997542211 111 111 11335679999999
Q ss_pred CCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCC
Q 001184 419 PDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHE 497 (1130)
Q Consensus 419 pdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~ 497 (1130)
|||+.|++|+.-.++.|||+.+... +....+....-..++++.+||.+ ++++|..||.|.||| .+...++.|.||.
T Consensus 475 pdgrtLivGGeastlsiWDLAapTp-rikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq~~VrqfqGht 551 (705)
T KOG0639|consen 475 PDGRTLIVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHT 551 (705)
T ss_pred CCCceEEeccccceeeeeeccCCCc-chhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccceeeecccCCC
Confidence 9999999999999999999987542 22233444445678899999999 899999999999999 7778889999999
Q ss_pred cCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCC
Q 001184 498 APVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG 577 (1130)
Q Consensus 498 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1130)
+.+.|+.++ .+|..|.+|+.|++||.||++.+........ ...|.++.++|.+.+++++-. ++.+.+......
T Consensus 552 DGascIdis--~dGtklWTGGlDntvRcWDlregrqlqqhdF-~SQIfSLg~cP~~dWlavGMe----ns~vevlh~skp 624 (705)
T KOG0639|consen 552 DGASCIDIS--KDGTKLWTGGLDNTVRCWDLREGRQLQQHDF-SSQIFSLGYCPTGDWLAVGME----NSNVEVLHTSKP 624 (705)
T ss_pred CCceeEEec--CCCceeecCCCccceeehhhhhhhhhhhhhh-hhhheecccCCCccceeeecc----cCcEEEEecCCc
Confidence 999999884 5678999999999999999998887765543 346899999999999999975 677777764432
Q ss_pred ceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEE
Q 001184 578 ALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIK 657 (1130)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~ 657 (1130)
....+.. +...|.++.|.+.|+++++.+.|+.+..|.+.-|..+...+.. ..|.++.+|.|.+++++|+.|..-.
T Consensus 625 -~kyqlhl-heScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~---SsVlsCDIS~ddkyIVTGSGdkkAT 699 (705)
T KOG0639|consen 625 -EKYQLHL-HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES---SSVLSCDISFDDKYIVTGSGDKKAT 699 (705)
T ss_pred -cceeecc-cccEEEEEEecccCceeeecCchhhhhhccCccccceeecccc---CcceeeeeccCceEEEecCCCcceE
Confidence 2333333 4458999999999999999999999999999999877666543 3799999999999999999999888
Q ss_pred EEEc
Q 001184 658 ILAN 661 (1130)
Q Consensus 658 iw~~ 661 (1130)
+|.+
T Consensus 700 VYeV 703 (705)
T KOG0639|consen 700 VYEV 703 (705)
T ss_pred EEEE
Confidence 8865
No 116
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=1.7e-23 Score=212.26 Aligned_cols=240 Identities=17% Similarity=0.294 Sum_probs=197.4
Q ss_pred CccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCC
Q 001184 766 SASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKND 845 (1130)
Q Consensus 766 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg 845 (1130)
|.-.|+.+.++++...+++++.|..|++|........ .....|..+|+.+...|.|
T Consensus 260 h~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~------------------------~~~~~h~~~V~~ls~h~tg 315 (506)
T KOG0289|consen 260 HTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEP------------------------TSSRPHEEPVTGLSLHPTG 315 (506)
T ss_pred cceEEEEEEeccchhheeecCCcceEEeeccccccCc------------------------cccccccccceeeeeccCC
Confidence 6677888999999999999999999999975432210 0112589999999999999
Q ss_pred CEEEEEe-CCeEEEEECCCceeEEEEeCC--CCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeE
Q 001184 846 SYVMSAG-GGKVSLFNMMNFKVMTTFMSP--PPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITG 922 (1130)
Q Consensus 846 ~~la~~~-dg~i~iwd~~~~~~~~~~~~~--~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 922 (1130)
.||++++ |+.+.+.|+.++.++...... .-.+++.+|+| ||.++++|..||.|+|||+.++..+..|.+|+++|..
T Consensus 316 eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~ 394 (506)
T KOG0289|consen 316 EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKA 394 (506)
T ss_pred cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccccccCCCCCCceeE
Confidence 9999999 799999999999988776642 34589999999 9999999999999999999999999999999999999
Q ss_pred EEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE-cCCcEEEEECC--Cceee
Q 001184 923 LAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-HETQLAIYDGS--KMECI 999 (1130)
Q Consensus 923 l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~d~~i~v~d~~--~~~~~ 999 (1130)
++|+.+|.||++++.|+.|++||+..-+....... ... -++.++.|.+.|.+|+.+ .+=.|++++-. ....+
T Consensus 395 i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l--~~~---~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~ 469 (506)
T KOG0289|consen 395 ISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQL--DEK---KEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEI 469 (506)
T ss_pred EEeccCceEEEEEecCCeEEEEEehhhcccceeec--ccc---ccceeEEEcCCCCeEEeecceeEEEEEecccccceee
Confidence 99999999999999999999999998553333222 221 368999999999999985 44445555432 45556
Q ss_pred eeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeC
Q 001184 1000 RQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDA 1038 (1130)
Q Consensus 1000 ~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~ 1038 (1130)
..+..+ .+..+.+.|..+.+++++++.|..++++-+
T Consensus 470 ~~~~~~---sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 470 KELADH---SGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ehhhhc---ccccceeeecccceEEeeccchhheEEeec
Confidence 655544 678999999999999999999999988754
No 117
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=1.6e-23 Score=203.05 Aligned_cols=249 Identities=16% Similarity=0.195 Sum_probs=195.0
Q ss_pred ecCCCccEEEEEEcC-CCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001184 405 VKDSSISVSRVAWSP-DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1130)
Q Consensus 405 ~~~h~~~V~~v~~sp-dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iw 483 (1130)
-...+..|.+++||| ...+++.++.|++||+|+++....+.. +....|.++|.+++|+.||. .+++|+.|+.+++|
T Consensus 23 ~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~w 99 (347)
T KOG0647|consen 23 PNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKLW 99 (347)
T ss_pred CCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCc--eEEeeccCCceEEE
Confidence 345678999999999 556777899999999999987422222 34677999999999999998 79999999999999
Q ss_pred e-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeec
Q 001184 484 D-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1130)
Q Consensus 484 d-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1130)
| .++ .+..+..|.++|..+.|.+......|++||.|.+|+.||.+.......+..++. ++++..- ..+++++..
T Consensus 100 DL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeR-vYa~Dv~--~pm~vVata- 174 (347)
T KOG0647|consen 100 DLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPER-VYAADVL--YPMAVVATA- 174 (347)
T ss_pred EccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccce-eeehhcc--CceeEEEec-
Confidence 9 555 677788899999999998877777999999999999999998888887766543 4444332 335555543
Q ss_pred CCCCcEEEEeeCCCCcee-EEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC--ceeEEEeccCC-------C
Q 001184 563 KEGDSHLVEWNESEGALK-RTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNV--NMLTSTEAEGG-------L 632 (1130)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~-------~ 632 (1130)
+..|.+|+++.+... +.....-...++|++..++....+.|+-+|.+-|..++.+ +.-.+++.|.. .
T Consensus 175 ---~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~V 251 (347)
T KOG0647|consen 175 ---ERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDV 251 (347)
T ss_pred ---CCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCce
Confidence 888999999766433 2333333446889999999888899999999999998876 33334444432 3
Q ss_pred CCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 633 PSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 633 ~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
-.|++++|+|....|++++.||++.+||-+..
T Consensus 252 YaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar 283 (347)
T KOG0647|consen 252 YAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR 283 (347)
T ss_pred EEecceEeecccceEEEecCCceEEEecchhh
Confidence 35788999999999999999999999996544
No 118
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2e-23 Score=203.47 Aligned_cols=243 Identities=19% Similarity=0.256 Sum_probs=204.5
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iw 483 (1130)
.+..|.+.|+++|.+ |.++|+|+.|-+|+|||+.....+. .+-.|.+.|+++.|.++-..-.|++|+.||.|.+|
T Consensus 38 ~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg---~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw 112 (362)
T KOG0294|consen 38 AFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLG---ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIW 112 (362)
T ss_pred cccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhc---ceeccccceEEEEecCCcchhheeeecCCCcEEEE
Confidence 467899999999995 8999999999999999999877665 56779999999999987642258999999999999
Q ss_pred e-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeec
Q 001184 484 D-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1130)
Q Consensus 484 d-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1130)
+ ..-.++..+++|.+.|+.++++|++ ++-++.+.|+.++.||+-.++.-........ .+.+.|+|.|.+++..+
T Consensus 113 ~~~~W~~~~slK~H~~~Vt~lsiHPS~--KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~-at~v~w~~~Gd~F~v~~-- 187 (362)
T KOG0294|consen 113 RVGSWELLKSLKAHKGQVTDLSIHPSG--KLALSVGGDQVLRTWNLVRGRVAFVLNLKNK-ATLVSWSPQGDHFVVSG-- 187 (362)
T ss_pred EcCCeEEeeeecccccccceeEecCCC--ceEEEEcCCceeeeehhhcCccceeeccCCc-ceeeEEcCCCCEEEEEe--
Confidence 9 7778999999999999999998866 7888999999999999988877665554433 34599999999988887
Q ss_pred CCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEE--
Q 001184 563 KEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRF-- 640 (1130)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~-- 640 (1130)
...|-+|.+.+..+...+... ..+.++.|. ++..+++|++|+.|.+||.+...+...+..|.. .|.++.+
T Consensus 188 ---~~~i~i~q~d~A~v~~~i~~~--~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~--RVK~i~~~~ 259 (362)
T KOG0294|consen 188 ---RNKIDIYQLDNASVFREIENP--KRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHEN--RVKDIASYT 259 (362)
T ss_pred ---ccEEEEEecccHhHhhhhhcc--ccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchh--heeeeEEEe
Confidence 678999999887776666543 245566665 567899999999999999999888888877655 7888774
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 641 NKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 641 s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
.|++.+|++++.||.|++||++..
T Consensus 260 ~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 260 NPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred cCCceEEEEeccCceEEEEEcccc
Confidence 567899999999999999998765
No 119
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.8e-24 Score=202.99 Aligned_cols=252 Identities=20% Similarity=0.303 Sum_probs=208.6
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEec--CCCceEEEEEcCCCcEE
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSY--PNKQLCIVTCGDDKLIR 481 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~--d~~~l~l~s~s~d~~v~ 481 (1130)
+...|+..|..+...--|++||+|+.|++|+|+.+..........++.||.++|+.++|.. -|. +|++++.||.|.
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkVI 83 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKVI 83 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceEE
Confidence 5678999999999988999999999999999999998776667778999999999999987 677 899999999999
Q ss_pred EEe-cCCC--eeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCc---ceeeecCCCccEEEEEEecC---
Q 001184 482 VWD-LSGR--KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVG---SRVDYDAPGLWCTTMLYSAD--- 552 (1130)
Q Consensus 482 iwd-~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~s~~--- 552 (1130)
||. ..|+ ....+..|...|++++|.|..-|-.|++++.||.|.+.+++... .......|.-.|++++|.|.
T Consensus 84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~ 163 (299)
T KOG1332|consen 84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP 163 (299)
T ss_pred EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence 999 5553 34566789999999999999999999999999999999988762 22345667778999999986
Q ss_pred C-----------CeEEEeeecCCCCcEEEEeeCCCCc--eeEEEecccCceeEEEEEcCCC----CEEEEEeCCCcEEEE
Q 001184 553 G-----------SRLFSCGTSKEGDSHLVEWNESEGA--LKRTYIGFRKKSAGVVQFDTTR----NRILAAGEDNQIKFW 615 (1130)
Q Consensus 553 ~-----------~~l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~i~vw 615 (1130)
| +.|++++. |..|.+|+...+. ..+++.+|.+ -++.++|.|.- .+|++++.||++.||
T Consensus 164 g~~~~~~~~~~~krlvSgGc----Dn~VkiW~~~~~~w~~e~~l~~H~d-wVRDVAwaP~~gl~~s~iAS~SqDg~viIw 238 (299)
T KOG1332|consen 164 GSLVDQGPAAKVKRLVSGGC----DNLVKIWKFDSDSWKLERTLEGHKD-WVRDVAWAPSVGLPKSTIASCSQDGTVIIW 238 (299)
T ss_pred ccccccCcccccceeeccCC----ccceeeeecCCcchhhhhhhhhcch-hhhhhhhccccCCCceeeEEecCCCcEEEE
Confidence 5 56899987 9999999987753 3456788777 89999999975 379999999999999
Q ss_pred eCCCC-ceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcC
Q 001184 616 DMDNV-NMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANA 662 (1130)
Q Consensus 616 d~~~~-~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~ 662 (1130)
..+.. +.-...-.+.-...+..+.||..|+.|++++.|+.+.+|.-.
T Consensus 239 t~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 239 TKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred EecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 87632 111111122233468999999999999999999999999743
No 120
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=7.8e-25 Score=216.85 Aligned_cols=241 Identities=16% Similarity=0.266 Sum_probs=197.6
Q ss_pred ecCCCccEEEEEEcCCC-CEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001184 405 VKDSSISVSRVAWSPDG-NFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1130)
Q Consensus 405 ~~~h~~~V~~v~~spdg-~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iw 483 (1130)
+.||...|.|++=+|.. ..+|+|+.||.|++||+....++. ++..|.+.|..|++.. . .++++|.|++|+.|
T Consensus 62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~---~f~AH~G~V~Gi~v~~--~--~~~tvgdDKtvK~w 134 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR---TFKAHEGLVRGICVTQ--T--SFFTVGDDKTVKQW 134 (433)
T ss_pred ccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh---eeecccCceeeEEecc--c--ceEEecCCcceeee
Confidence 57999999999999987 789999999999999999987776 7899999999999987 3 58999999999999
Q ss_pred ecCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecC
Q 001184 484 DLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSK 563 (1130)
Q Consensus 484 d~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1130)
-..+..++++.+. ..+..+.-+. .+..++|+|. .|.|||.....+...+......|.++.|+|-...++.++.
T Consensus 135 k~~~~p~~tilg~-s~~~gIdh~~--~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~-- 207 (433)
T KOG0268|consen 135 KIDGPPLHTILGK-SVYLGIDHHR--KNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCA-- 207 (433)
T ss_pred eccCCcceeeecc-cccccccccc--ccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeec--
Confidence 9888777777643 3445554332 2356777764 5889999988888888888888999999998776655442
Q ss_pred CCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc-eeEEEeccCCCCCcceEEEcC
Q 001184 564 EGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVN-MLTSTEAEGGLPSLPRLRFNK 642 (1130)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~i~~v~~s~ 642 (1130)
.|+.|.+||++++.+++.+.-. ...+.++|+|.+--+++|++|..++.||++... ++.....| ...|.++.|||
T Consensus 208 -sDrsIvLyD~R~~~Pl~KVi~~--mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dh--vsAV~dVdfsp 282 (433)
T KOG0268|consen 208 -SDRSIVLYDLRQASPLKKVILT--MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDH--VSAVMDVDFSP 282 (433)
T ss_pred -cCCceEEEecccCCccceeeee--ccccceecCccccceeeccccccceehhhhhhcccchhhccc--ceeEEEeccCC
Confidence 2899999999999988776532 245679999977778889999999999998754 44445444 44899999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCC
Q 001184 643 EGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 643 ~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
.|+-+++|+.|.+|+||....+
T Consensus 283 tG~EfvsgsyDksIRIf~~~~~ 304 (433)
T KOG0268|consen 283 TGQEFVSGSYDKSIRIFPVNHG 304 (433)
T ss_pred CcchhccccccceEEEeecCCC
Confidence 9999999999999999998765
No 121
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1e-23 Score=204.50 Aligned_cols=333 Identities=14% Similarity=0.231 Sum_probs=245.3
Q ss_pred ceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEE
Q 001184 578 ALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIK 657 (1130)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~ 657 (1130)
++++.+.||.+ .|..++.....+.+.+++.|.+-+||.++++.++.++.+|.+ .|+++.|++.+.++++++.|++-.
T Consensus 139 ~lvre~~GHkD-GiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~G--SVNsikfh~s~~L~lTaSGD~taH 215 (481)
T KOG0300|consen 139 RLVRELEGHKD-GIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTG--SVNSIKFHNSGLLLLTASGDETAH 215 (481)
T ss_pred eehhhhccccc-ceeeehhhcCCcceeecccccceeEEeeccccceeeeccccc--ceeeEEeccccceEEEccCCcchH
Confidence 34567788777 677777777777888999999999999999999999987765 899999999999999999999999
Q ss_pred EEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCccccccc
Q 001184 658 ILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDI 737 (1130)
Q Consensus 658 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (1130)
||...-+.+.... ..|. . ..+.+... ..
T Consensus 216 IW~~av~~~vP~~-------------------------~a~~----------------~-hSsEeE~e----------~s 243 (481)
T KOG0300|consen 216 IWKAAVNWEVPSN-------------------------NAPS----------------D-HSSEEEEE----------HS 243 (481)
T ss_pred HHHHhhcCcCCCC-------------------------CCCC----------------C-CCchhhhh----------cc
Confidence 9975332111100 0000 0 00000000 00
Q ss_pred CCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCccccccccccccc
Q 001184 738 SDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQ 817 (1130)
Q Consensus 738 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~ 817 (1130)
|. +. +-..-....|| .+|++-
T Consensus 244 De--------------------------~~-~d~d~~~~sD~---------~tiRvP----------------------- 264 (481)
T KOG0300|consen 244 DE--------------------------HN-RDTDSSEKSDG---------HTIRVP----------------------- 264 (481)
T ss_pred cc--------------------------cc-cccccccccCC---------ceeeee-----------------------
Confidence 00 00 00000000011 111110
Q ss_pred CCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCC
Q 001184 818 PSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMED 896 (1130)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~d 896 (1130)
. .-..+|...|.+..|-..|+.+++++ |.+-.+||+++++.+..+.+|....+.++-+| ..+++++++.|
T Consensus 265 -------l-~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQrLVvTsSrD 335 (481)
T KOG0300|consen 265 -------L-MRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP-TQRLVVTSSRD 335 (481)
T ss_pred -------e-eeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC-cceEEEEeccC
Confidence 0 01126899999999999999999999 99999999999999999999999999999999 89999999999
Q ss_pred CcEEEEEeecC-eEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcC
Q 001184 897 STIQIYNVRVD-EVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHS 975 (1130)
Q Consensus 897 g~v~iwd~~~~-~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 975 (1130)
.+.++||+... ..+..|+||.+.|+++.|..| ..+++++.|.+|++||+.+-... +.......++..++.+.
T Consensus 336 tTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsp------lATIRtdS~~NRvavs~ 408 (481)
T KOG0300|consen 336 TTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSP------LATIRTDSPANRVAVSK 408 (481)
T ss_pred ceeEeccchhhcceeeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccCc------ceeeecCCccceeEeec
Confidence 99999999843 567889999999999999876 57899999999999999874321 11122336788999999
Q ss_pred CCcEEEEE-cCCcEEEEECCCceeeeeee--cCCCCCCCeEEEEECCCCC--EEEEEeCCCcEEEEeCCCc
Q 001184 976 DQVRLLVN-HETQLAIYDGSKMECIRQWV--PQDVLSSPISSAAYSCNSQ--LIYATFTDGSIGVFDADSL 1041 (1130)
Q Consensus 976 d~~~l~~~-~d~~i~v~d~~~~~~~~~~~--~~~~~~~~v~~v~~s~dg~--~l~t~~~Dg~i~vwd~~~~ 1041 (1130)
.+..++.- +++.|++||+..... ..+. ...+|..-|+|++|+.+.. -|++++-|..+.=|.+..-
T Consensus 409 g~~iIAiPhDNRqvRlfDlnG~Rl-aRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 409 GHPIIAIPHDNRQVRLFDLNGNRL-ARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred CCceEEeccCCceEEEEecCCCcc-ccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 99899885 567899999985444 3333 2345688999999987654 6888899999999998643
No 122
>PTZ00420 coronin; Provisional
Probab=99.92 E-value=7.7e-23 Score=232.07 Aligned_cols=227 Identities=15% Similarity=0.222 Sum_probs=182.0
Q ss_pred EeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecC-CCceEEEEEcCCCcEEEEe-cCCC--------eeeEecCC
Q 001184 427 AFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYP-NKQLCIVTCGDDKLIRVWD-LSGR--------KLFQFEGH 496 (1130)
Q Consensus 427 ~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d-~~~l~l~s~s~d~~v~iwd-~~~~--------~~~~~~~h 496 (1130)
|+.++.|++|+..... ....+.+|.+.|.+++|+|+ +. +|++|+.|++|+||| .++. ++..+.+|
T Consensus 50 GG~~gvI~L~~~~r~~---~v~~L~gH~~~V~~lafsP~~~~--lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH 124 (568)
T PTZ00420 50 GGLIGAIRLENQMRKP---PVIKLKGHTSSILDLQFNPCFSE--ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH 124 (568)
T ss_pred CCceeEEEeeecCCCc---eEEEEcCCCCCEEEEEEcCCCCC--EEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence 6678899999987643 33468899999999999997 56 899999999999999 4332 34567899
Q ss_pred CcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCC
Q 001184 497 EAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE 576 (1130)
Q Consensus 497 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1130)
...|.+++|+|... .++++++.|++|++||+++......+. +...|.+++|+|+|.+|++++. ++.|++||+++
T Consensus 125 ~~~V~sVaf~P~g~-~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~----D~~IrIwD~Rs 198 (568)
T PTZ00420 125 KKKISIIDWNPMNY-YIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCV----GKHMHIIDPRK 198 (568)
T ss_pred CCcEEEEEECCCCC-eEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEec----CCEEEEEECCC
Confidence 99999999987542 456899999999999999888766665 4567999999999999998875 88999999999
Q ss_pred CceeEEEecccCce----eEEEEEcCCCCEEEEEeCCC----cEEEEeCCC-CceeEEEeccCCCCCcceEEEcCCCCEE
Q 001184 577 GALKRTYIGFRKKS----AGVVQFDTTRNRILAAGEDN----QIKFWDMDN-VNMLTSTEAEGGLPSLPRLRFNKEGNLL 647 (1130)
Q Consensus 577 ~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~dg----~i~vwd~~~-~~~~~~~~~~~~~~~i~~v~~s~~~~~l 647 (1130)
++.+..+.+|.+.. +....|+++++++++++.|+ .|++||+++ ++++.....+.....+......+++.++
T Consensus 199 g~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~ 278 (568)
T PTZ00420 199 QEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIY 278 (568)
T ss_pred CcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEE
Confidence 99999999887532 22234568889999988774 799999985 6677766665544344444445678999
Q ss_pred EEEeCCCcEEEEEcCCC
Q 001184 648 VVTTADQGIKILANADG 664 (1130)
Q Consensus 648 ~~~~~dg~i~iw~~~~~ 664 (1130)
++|+.|+.|++|++..+
T Consensus 279 lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 279 LIGKGDGNCRYYQHSLG 295 (568)
T ss_pred EEEECCCeEEEEEccCC
Confidence 99999999999999765
No 123
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=1.4e-23 Score=215.65 Aligned_cols=264 Identities=16% Similarity=0.244 Sum_probs=211.7
Q ss_pred ceeeeccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEc
Q 001184 339 AVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWS 418 (1130)
Q Consensus 339 ~~~~~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 418 (1130)
+....+.|.++|+.+.+-|....++|+++..+.|.|||+.+..-.... .+...+...+.+|...=.+++|+
T Consensus 116 ~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~---------~~~~~Pdl~L~gH~~eg~glsWn 186 (422)
T KOG0264|consen 116 EISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKA---------SGECRPDLRLKGHEKEGYGLSWN 186 (422)
T ss_pred EEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccc---------cccCCCceEEEeecccccccccc
Confidence 344456799999999999999989999999999999999764332210 00112333688999888889999
Q ss_pred CCCC-EEEEEeCCCeEEEEEecCCcc----ceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-c--CCCee
Q 001184 419 PDGN-FIGVAFTKHLIHLYTYQGSND----LCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-L--SGRKL 490 (1130)
Q Consensus 419 pdg~-~las~~~d~~i~vwd~~~~~~----~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~--~~~~~ 490 (1130)
+... +|++++.|++|++||+..... +.....+.+|...|.+++|++-... ++++++.|+.+.||| . +.++.
T Consensus 187 ~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L~iwD~R~~~~~~~ 265 (422)
T KOG0264|consen 187 RQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKLMIWDTRSNTSKPS 265 (422)
T ss_pred cccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeEEEEEcCCCCCCCc
Confidence 9644 889999999999999976443 5566678999999999999997776 799999999999999 5 55666
Q ss_pred eEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcc-eeeecCCCccEEEEEEecCCCeE-EEeeecCCCCcE
Q 001184 491 FQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGS-RVDYDAPGLWCTTMLYSADGSRL-FSCGTSKEGDSH 568 (1130)
Q Consensus 491 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l-~~~~~~~~~~~~ 568 (1130)
....+|+++|+|++|+|.. +.+|++||.|++|++||+++... ...+..|...|..+.|+|....+ ++.+. |+.
T Consensus 266 ~~~~ah~~~vn~~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~----D~r 340 (422)
T KOG0264|consen 266 HSVKAHSAEVNCVAFNPFN-EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGT----DRR 340 (422)
T ss_pred ccccccCCceeEEEeCCCC-CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEeccc----CCc
Confidence 7788999999999999865 58999999999999999998665 45888999999999999976654 45544 999
Q ss_pred EEEeeCCCC--------------ceeEEEecccCceeEEEEEcCCCCE-EEEEeCCCcEEEEeCC
Q 001184 569 LVEWNESEG--------------ALKRTYIGFRKKSAGVVQFDTTRNR-ILAAGEDNQIKFWDMD 618 (1130)
Q Consensus 569 i~~wd~~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~vwd~~ 618 (1130)
+.+||+..- +++..-.||.. .|..+.|+|...+ |+++++|+.+.||.+.
T Consensus 341 l~vWDls~ig~eq~~eda~dgppEllF~HgGH~~-kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 341 LNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTA-KVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred EEEEeccccccccChhhhccCCcceeEEecCccc-ccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 999998542 12234445544 7888999998875 5668999999999986
No 124
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=8e-24 Score=198.62 Aligned_cols=252 Identities=19% Similarity=0.285 Sum_probs=203.6
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcC--CCC
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP--DGN 422 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--dg~ 422 (1130)
.|++-|..+...--|++ ||+++.|++|+|+.+.+..... ....+.||+++|..++|-. -|.
T Consensus 9 ~H~D~IHda~lDyygkr-lATcsSD~tVkIf~v~~n~~s~----------------ll~~L~Gh~GPVwqv~wahPk~G~ 71 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGKR-LATCSSDGTVKIFEVRNNGQSK----------------LLAELTGHSGPVWKVAWAHPKFGT 71 (299)
T ss_pred hhhhhhhHhhhhhhcce-eeeecCCccEEEEEEcCCCCce----------------eeeEecCCCCCeeEEeecccccCc
Confidence 48999999999989986 9999999999999998765321 1226889999999999986 799
Q ss_pred EEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe--cCCCe--eeEecCCCc
Q 001184 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRK--LFQFEGHEA 498 (1130)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd--~~~~~--~~~~~~h~~ 498 (1130)
+||+++.||.|.||.-++| ...+......|...|++++|.|.+-.+.|+.++.||.|.|.+ .+|.- .+....|.-
T Consensus 72 iLAScsYDgkVIiWke~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~ 150 (299)
T KOG1332|consen 72 ILASCSYDGKVIIWKEENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEI 150 (299)
T ss_pred EeeEeecCceEEEEecCCC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccc
Confidence 9999999999999999888 455566778999999999999998888999999999999998 33222 244568999
Q ss_pred CEEEEeecccCCc------------cEEEEEecCCcEEEEEccCCcce--eeecCCCccEEEEEEecCC----CeEEEee
Q 001184 499 PVYSVCPHQKENI------------HFIFSTAVDGKIKAWLYDNVGSR--VDYDAPGLWCTTMLYSADG----SRLFSCG 560 (1130)
Q Consensus 499 ~v~~~~~~~~~~~------------~~l~s~s~dg~i~vwd~~~~~~~--~~~~~~~~~v~~~~~s~~~----~~l~~~~ 560 (1130)
.|++++|.|..-. ..|++|+.|..|+||+.++.+-. ..+..|...|+.++|.|.- .+|++++
T Consensus 151 GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S 230 (299)
T KOG1332|consen 151 GVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS 230 (299)
T ss_pred ccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEec
Confidence 9999999876221 56999999999999999876322 2478899999999999965 4688887
Q ss_pred ecCCCCcEEEEeeCCCC--ceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001184 561 TSKEGDSHLVEWNESEG--ALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMD 618 (1130)
Q Consensus 561 ~~~~~~~~i~~wd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 618 (1130)
. |+++.||..... .-..++...-...+..+.|+..|+.|+.++.|+.+.+|.-.
T Consensus 231 q----Dg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 231 Q----DGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred C----CCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 5 999999986522 11122221123368899999999999999999999999754
No 125
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=4.7e-23 Score=200.37 Aligned_cols=298 Identities=13% Similarity=0.194 Sum_probs=222.2
Q ss_pred CcccceeeeccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEE
Q 001184 335 DLPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSR 414 (1130)
Q Consensus 335 ~~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 414 (1130)
+.|.++..++.|.. ..|+.|++.|. +||+|+.||.|.|||+.|-..-+ ++.+|-.+|+|
T Consensus 12 ~~PEel~~tld~~~-a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~iar-------------------~lsaH~~pi~s 70 (405)
T KOG1273|consen 12 EYPEELTHTLDNPL-AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIAR-------------------MLSAHVRPITS 70 (405)
T ss_pred cChHhhceeccCCc-cceEEeccCcc-eeeeeccCCcEEEEEccccchhh-------------------hhhccccceeE
Confidence 45666777787766 89999999998 69999999999999998866443 68899999999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEec
Q 001184 415 VAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFE 494 (1130)
Q Consensus 415 v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~ 494 (1130)
++||+||+.|++++.|..|.+||+..|.++++. ....+|+.+.|.|..++..++ +-.+..-.+-+.+...-..+.
T Consensus 71 l~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri----rf~spv~~~q~hp~k~n~~va-~~~~~sp~vi~~s~~~h~~Lp 145 (405)
T KOG1273|consen 71 LCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI----RFDSPVWGAQWHPRKRNKCVA-TIMEESPVVIDFSDPKHSVLP 145 (405)
T ss_pred EEecCCCCEeeeecCCceeEEEeccCCCceeEE----EccCccceeeeccccCCeEEE-EEecCCcEEEEecCCceeecc
Confidence 999999999999999999999999999876632 246789999999987763343 333333444442221111111
Q ss_pred -CCCcCEEEEe--ecccCCccEEEEEecCCcEEEEEccCCcceeeecCCC-ccEEEEEEecCCCeEEEeeecCCCCcEEE
Q 001184 495 -GHEAPVYSVC--PHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPG-LWCTTMLYSADGSRLFSCGTSKEGDSHLV 570 (1130)
Q Consensus 495 -~h~~~v~~~~--~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1130)
...+..+..+ -..+..|+++++|...|.+.++|.++.+++..+.... ..|..+.++..|+.|+..+. |..|+
T Consensus 146 ~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNts----DRvIR 221 (405)
T KOG1273|consen 146 KDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTS----DRVIR 221 (405)
T ss_pred CCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecC----CceEE
Confidence 1111111111 1235667899999999999999999998887666555 67999999999999999876 99999
Q ss_pred EeeCCCC-------cee--EEEec-ccCceeEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCceeEEEeccCCCCCcceEE
Q 001184 571 EWNESEG-------ALK--RTYIG-FRKKSAGVVQFDTTRNRILAAGE-DNQIKFWDMDNVNMLTSTEAEGGLPSLPRLR 639 (1130)
Q Consensus 571 ~wd~~~~-------~~~--~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~ 639 (1130)
.|+++.- .+. +.+.. -......+++|+.+|.++++++. ...++||....|.+++.+.+..+. ....+.
T Consensus 222 ~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE-~l~DV~ 300 (405)
T KOG1273|consen 222 TYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGE-ELLDVN 300 (405)
T ss_pred EEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchh-heeecc
Confidence 9997621 111 11110 01124557899999999888763 467999999999999999876543 577899
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 640 FNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 640 ~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
|+|-...+++- ..|.+++|.....
T Consensus 301 whp~rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 301 WHPVRPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred cccceeeeeec-cCCceEEEEeecc
Confidence 99988877777 7899999987543
No 126
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=8.9e-21 Score=210.78 Aligned_cols=567 Identities=13% Similarity=0.126 Sum_probs=328.9
Q ss_pred EEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCC---EEEEEe
Q 001184 352 SMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN---FIGVAF 428 (1130)
Q Consensus 352 ~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~---~las~~ 428 (1130)
.-.||+|+++++.. .+..|.||...+|+++. .+.+|...+..+.+.|... ++.+++
T Consensus 21 ~avfSnD~k~l~~~--~~~~V~VyS~~Tg~~i~-------------------~l~~~~a~l~s~~~~~~~~~~~~~~~~s 79 (792)
T KOG1963|consen 21 PAVFSNDAKFLFLC--TGNFVKVYSTATGECIT-------------------SLEDHTAPLTSVIVLPSSENANYLIVCS 79 (792)
T ss_pred ccccccCCcEEEEe--eCCEEEEEecchHhhhh-------------------hcccccCccceeeecCCCccceEEEEEe
Confidence 34799999964443 35699999999999986 5889999999999988644 677999
Q ss_pred CCCeEEEEEecCCccceeeeeeecCCCCeeEEEEec----CCCceEEEEEcCCCcEE----------E--Ee---cCCCe
Q 001184 429 TKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSY----PNKQLCIVTCGDDKLIR----------V--WD---LSGRK 489 (1130)
Q Consensus 429 ~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~----d~~~l~l~s~s~d~~v~----------i--wd---~~~~~ 489 (1130)
.||.|++||...+..++ ++.. ..++.++.+.| ... .+..+..|..+. . +. .....
T Consensus 80 l~G~I~vwd~~~~~Llk---t~~~-~~~v~~~~~~~~~a~~s~--~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~ 153 (792)
T KOG1963|consen 80 LDGTIRVWDWSDGELLK---TFDN-NLPVHALVYKPAQADISA--NVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAK 153 (792)
T ss_pred cCccEEEecCCCcEEEE---EEec-CCceeEEEechhHhCccc--eeEeecccceeeeecccccccceeeeEeeeccccc
Confidence 99999999999987665 2322 22344443322 111 111121221111 1 11 00011
Q ss_pred eeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCccee----eecCCCccEEEEEEecCCCeEEEeeecCCC
Q 001184 490 LFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV----DYDAPGLWCTTMLYSADGSRLFSCGTSKEG 565 (1130)
Q Consensus 490 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 565 (1130)
...+.+|.. -.++.+.+.. .+.....+..+.+|+........ .-..|...+++.+++|.+++++++-.
T Consensus 154 ~d~~~~~~~-~~~I~~~~~g---e~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~---- 225 (792)
T KOG1963|consen 154 GDFLKEHQE-PKSIVDNNSG---EFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDS---- 225 (792)
T ss_pred hhhhhhhcC-CccEEEcCCc---eEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEecc----
Confidence 111222322 2344443333 33444456678888887654221 11223445799999999999999865
Q ss_pred CcEEEEeeCCC--C--ceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEc
Q 001184 566 DSHLVEWNESE--G--ALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFN 641 (1130)
Q Consensus 566 ~~~i~~wd~~~--~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s 641 (1130)
+|+|.+|.--. + .....+.=|++ .|.+++|+++|.+|++||..|.+-+|.+.+++ .+-++.-+. +|..+.++
T Consensus 226 dGrI~vw~d~~~~~~~~t~t~lHWH~~-~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs--~I~~i~vS 301 (792)
T KOG1963|consen 226 DGRILVWRDFGSSDDSETCTLLHWHHD-EVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGS--PILHIVVS 301 (792)
T ss_pred CCcEEEEeccccccccccceEEEeccc-ccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCC--eeEEEEEc
Confidence 89999997432 1 12344555555 89999999999999999999999999999988 333333333 79999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCC
Q 001184 642 KEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGA 721 (1130)
Q Consensus 642 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~ 721 (1130)
||+.+.+....|+.|.+....+. .....+.+.... .|+
T Consensus 302 ~ds~~~sl~~~DNqI~li~~~dl-~~k~tIsgi~~~-------------------~~~---------------------- 339 (792)
T KOG1963|consen 302 PDSDLYSLVLEDNQIHLIKASDL-EIKSTISGIKPP-------------------TPS---------------------- 339 (792)
T ss_pred CCCCeEEEEecCceEEEEeccch-hhhhhccCccCC-------------------Ccc----------------------
Confidence 99999999999999999887554 333333221110 000
Q ss_pred CccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCC
Q 001184 722 DSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQ 801 (1130)
Q Consensus 722 ~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~ 801 (1130)
. .....+-.+.++++|.-+.++..+..|.+++||+..
T Consensus 340 -----------------~-----------------------k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~t--- 376 (792)
T KOG1963|consen 340 -----------------T-----------------------KTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYT--- 376 (792)
T ss_pred -----------------c-----------------------cccccccceeEEEcCCCCceeecCCCceEEEEeccc---
Confidence 0 000122233445555444455555555665555322
Q ss_pred CCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEeCCeEEEEECCCceeEEEEeCCCCCeEEEE
Q 001184 802 NPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLA 881 (1130)
Q Consensus 802 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~ 881 (1130)
...+..+....... .+|.+ .+.-.+++++
T Consensus 377 -------------------------------d~~i~~~~v~~~n~-----~~~~~---------------n~~v~itav~ 405 (792)
T KOG1963|consen 377 -------------------------------DSTIYKLQVCDENY-----SDGDV---------------NIQVGITAVA 405 (792)
T ss_pred -------------------------------cceeeeEEEEeecc-----cCCcc---------------eeEEeeeeeh
Confidence 11122221110000 00000 0112355666
Q ss_pred EeCCCCcEEEEEe--------CCC--cEEEEEeecCe----EEEE-EecCCCCeeEEEEccC-C-CeEEEEeCCCcEEEE
Q 001184 882 FHPQDNNIIAIGM--------EDS--TIQIYNVRVDE----VKTK-LKGHQKHITGLAFSTN-L-NILVSSGSDAQLIFW 944 (1130)
Q Consensus 882 ~sp~~~~~lasg~--------~dg--~v~iwd~~~~~----~~~~-l~~h~~~V~~l~~s~d-g-~~L~s~s~Dg~i~vw 944 (1130)
.+. .|.+++++- .|| .+++|...... +... ...|...+.+.++.+. . .++++++.||.++||
T Consensus 406 ~~~-~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW 484 (792)
T KOG1963|consen 406 RSR-FGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIW 484 (792)
T ss_pred hhc-cceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEE
Confidence 666 466666653 233 47889776443 2222 2368777776666543 2 389999999999999
Q ss_pred ECCCCcccc----eeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCC
Q 001184 945 NTDTWEKRK----SIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCN 1020 (1130)
Q Consensus 945 d~~~~~~~~----~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~d 1020 (1130)
-+...+... ..........+..++...+|+.||..|+++.++.|.+||..+...+....+.. ..++..++|...
T Consensus 485 ~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~~~~l~~~~~~~--~~~~~~~~~~~~ 562 (792)
T KOG1963|consen 485 VFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDDTITIWDYDTKNELLCTEGSR--NWPIAELLFTAQ 562 (792)
T ss_pred EEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEecCCEEEEecCCChhhhhcccccc--ccchHhHhhhcc
Confidence 984422111 11111112223468899999999999999999999999998832222222211 344555555432
Q ss_pred CC--EEEEEeCCCcEEEEeCCCcccccccCCCccccc-----CCCCCceeeeEEEEEcCCCCCEEE--------EEeCCC
Q 001184 1021 SQ--LIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQ-----ASPNSQTVFPLVVTSHPQEPNQLA--------VGLTDG 1085 (1130)
Q Consensus 1021 g~--~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~--------s~~~Dg 1085 (1130)
.. ..+.......+.+|++.++.+.-.+....++.. .....+.+....+++.+..+..+. ..+.|+
T Consensus 563 ~~~~~~~~~~~~~~l~~WNll~~~l~w~~s~~~~i~~~~~~~~~~~~s~v~s~~f~vi~~~p~~~~~~k~~~~~f~~~~~ 642 (792)
T KOG1963|consen 563 TQNDGALVHATQQRLSVWNLLSMSLIWNLSLSLRIEGVHVDRAADGDSSVGSTAFAVICWLPELLLVVKSIEQIFRGRDS 642 (792)
T ss_pred cccccceeeccCceEehHhhhhhheecchhhhhhhhcchhhhhhccccccCccceEEEeecccchhhhhhhhhhcccccc
Confidence 11 122223478899999998877653221111111 000112222222222222333444 778888
Q ss_pred cEEEEeCCCCc
Q 001184 1086 SVKVIEPSETE 1096 (1130)
Q Consensus 1086 ~v~vW~~~~~~ 1096 (1130)
+|.+++....+
T Consensus 643 ril~F~~~~pk 653 (792)
T KOG1963|consen 643 RILIFSGDSPK 653 (792)
T ss_pred eEEEecCCCch
Confidence 89898887766
No 127
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.91 E-value=6.1e-23 Score=220.50 Aligned_cols=276 Identities=16% Similarity=0.248 Sum_probs=219.2
Q ss_pred CCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeE-EEEe
Q 001184 764 TDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPC-VALS 842 (1130)
Q Consensus 764 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~-l~~s 842 (1130)
.+|...+..+++.+.. .++.++.||++++|+-.. ++.+......+|.+.|.+ +++-
T Consensus 11 ~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~----------------------~~~l~~~~~~~~~g~i~~~i~y~ 67 (745)
T KOG0301|consen 11 EGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKG----------------------KQYLETHAFEGPKGFIANSICYA 67 (745)
T ss_pred ccCccchheeEecCCe-EEeecCCCCceeeeeccC----------------------cccccceecccCcceeeccceec
Confidence 4588888888877655 788999999999996322 122221122246666666 7776
Q ss_pred c-CCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCe
Q 001184 843 K-NDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHI 920 (1130)
Q Consensus 843 ~-dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V 920 (1130)
+ ++-.+++|+ |..|.+|...+..++.++.+|...|.++.... ++. +++|++|.++++|.. +++...+++|...|
T Consensus 68 e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asV 143 (745)
T KOG0301|consen 68 ESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRI--GELVYSLQGHTASV 143 (745)
T ss_pred cccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCC-cCc-eEecccccceEEecc--hhhhcccCCcchhe
Confidence 4 444577777 99999999999999999999999999999877 555 889999999999986 45667799999999
Q ss_pred eEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCceeee
Q 001184 921 TGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIR 1000 (1130)
Q Consensus 921 ~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~ 1000 (1130)
+++++-|++ .++||+.|++|++|.-.+ ..+...+ |.+.|..+++-+++.+|-+++||.|+.|++ +|+++.
T Consensus 144 WAv~~l~e~-~~vTgsaDKtIklWk~~~-------~l~tf~g-HtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~ 213 (745)
T KOG0301|consen 144 WAVASLPEN-TYVTGSADKTIKLWKGGT-------LLKTFSG-HTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLL 213 (745)
T ss_pred eeeeecCCC-cEEeccCcceeeeccCCc-------hhhhhcc-chhheeeeEEecCCCeEeecCCceEEEEec-cCceee
Confidence 999999988 899999999999998754 2334444 448999999999999999999999999999 788888
Q ss_pred eeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEE
Q 001184 1001 QWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAV 1080 (1130)
Q Consensus 1001 ~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 1080 (1130)
...+| ..-|+++....++..++++++|++++||+.. ++...+..+ +.+++...+. + ..-+++
T Consensus 214 ~~~gh---tn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lP---------ttsiWsa~~L--~--NgDIvv 275 (745)
T KOG0301|consen 214 EMHGH---TNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLP---------TTSIWSAKVL--L--NGDIVV 275 (745)
T ss_pred eeecc---ceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecC---------ccceEEEEEe--e--CCCEEE
Confidence 87666 7899999999999999999999999999977 444444421 2345554443 2 235899
Q ss_pred EeCCCcEEEEeCCC
Q 001184 1081 GLTDGSVKVIEPSE 1094 (1130)
Q Consensus 1081 ~~~Dg~v~vW~~~~ 1094 (1130)
|+.||.|+||....
T Consensus 276 g~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 276 GGSDGRVRVFTVDK 289 (745)
T ss_pred eccCceEEEEEecc
Confidence 99999999999874
No 128
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=7.9e-22 Score=192.47 Aligned_cols=242 Identities=16% Similarity=0.104 Sum_probs=190.1
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecC
Q 001184 407 DSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLS 486 (1130)
Q Consensus 407 ~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~ 486 (1130)
.....|+++.|+|.+..|++++.||++++||+....... .-.|..++.+++|.++.+ +++|+-||.|+.+|..
T Consensus 11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~----~~~~~~plL~c~F~d~~~---~~~G~~dg~vr~~Dln 83 (323)
T KOG1036|consen 11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL----KFKHGAPLLDCAFADEST---IVTGGLDGQVRRYDLN 83 (323)
T ss_pred CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh----heecCCceeeeeccCCce---EEEeccCceEEEEEec
Confidence 446789999999999999999999999999998864332 235899999999998765 8999999999999976
Q ss_pred CCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCC
Q 001184 487 GRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGD 566 (1130)
Q Consensus 487 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 566 (1130)
......+..|..+|.++.+.+.. ..+++||.|++|++||.+.......+.... .|.++.. .|+.|++++. +
T Consensus 84 ~~~~~~igth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~~v--~g~~LvVg~~----~ 154 (323)
T KOG1036|consen 84 TGNEDQIGTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCMDV--SGNRLVVGTS----D 154 (323)
T ss_pred CCcceeeccCCCceEEEEeeccC--CeEEEcccCccEEEEeccccccccccccCc-eEEEEec--cCCEEEEeec----C
Confidence 66677777899999999987544 579999999999999999755554444333 5766655 4667777765 8
Q ss_pred cEEEEeeCCCCceeE-EEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC----ceeEEEeccCC-------CCC
Q 001184 567 SHLVEWNESEGALKR-TYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNV----NMLTSTEAEGG-------LPS 634 (1130)
Q Consensus 567 ~~i~~wd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~-------~~~ 634 (1130)
..+.+||+++..... .....-.-.++++++-|++.-+++++-||.|.+=.++.. +....++.|.. .-+
T Consensus 155 r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yP 234 (323)
T KOG1036|consen 155 RKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYP 234 (323)
T ss_pred ceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEE
Confidence 899999998755432 212222336889999998888999999999988766655 33344444421 226
Q ss_pred cceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 635 LPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 635 i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
|++++|+|-...+++|+.||.|.+||+.+.
T Consensus 235 VNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r 264 (323)
T KOG1036|consen 235 VNAIAFHPIHGTFATGGSDGIVNIWDLFNR 264 (323)
T ss_pred eceeEeccccceEEecCCCceEEEccCcch
Confidence 899999999899999999999999998776
No 129
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=5.6e-22 Score=220.14 Aligned_cols=279 Identities=18% Similarity=0.218 Sum_probs=218.5
Q ss_pred CccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCC
Q 001184 766 SASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKND 845 (1130)
Q Consensus 766 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg 845 (1130)
|....+.++|.|+|..|++++.||.|++|+.......|... ..+...|.+++. +.
T Consensus 12 ht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti-----------------------~~~g~~v~~ia~--~s 66 (933)
T KOG1274|consen 12 HTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETI-----------------------DISGELVSSIAC--YS 66 (933)
T ss_pred ccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchh-----------------------hccCceeEEEee--cc
Confidence 77778999999999999999999999999865432222110 014556666665 44
Q ss_pred CEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEE
Q 001184 846 SYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLA 924 (1130)
Q Consensus 846 ~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~ 924 (1130)
.+|++++ +++|.+|....++.-..+....-++++++|+- +|.++|.|+.|-.|++-++.+......+++|.++|.+|.
T Consensus 67 ~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~ 145 (933)
T KOG1274|consen 67 NHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLS 145 (933)
T ss_pred cceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCceeeee
Confidence 4777777 89999999998877666665667899999999 899999999999999999999999999999999999999
Q ss_pred EccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCC--CCCeEEEEEcCCCc-EEEEEcCCcEEEEECCCceeeee
Q 001184 925 FSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKL--PVGETRVQFHSDQV-RLLVNHETQLAIYDGSKMECIRQ 1001 (1130)
Q Consensus 925 ~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~d~~-~l~~~~d~~i~v~d~~~~~~~~~ 1001 (1130)
|+|.+++||+.+.||.|++||+.++..........+.... ...+..++|+|+|. +++.+.|+.|.+|+..+++....
T Consensus 146 ~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~ 225 (933)
T KOG1274|consen 146 YDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFK 225 (933)
T ss_pred EcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceehee
Confidence 9999999999999999999999997765544332222221 24678899999955 55558999999999999999888
Q ss_pred eecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEE
Q 001184 1002 WVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVG 1081 (1130)
Q Consensus 1002 ~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 1081 (1130)
+..... ...+..+.|||+|+|||+++.||.|.|||+++-+. |. -...+.+++|.|+ .+-+-.-
T Consensus 226 Lr~~~~-ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~~---------~~~~Vc~~aw~p~-~n~it~~ 288 (933)
T KOG1274|consen 226 LRDKLS-SSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER------HE---------FKRAVCCEAWKPN-ANAITLI 288 (933)
T ss_pred eccccc-ccceEEEEEcCCCcEEeeeccCCcEEEEecccchh------cc---------ccceeEEEecCCC-CCeeEEE
Confidence 877654 33499999999999999999999999999998322 11 1134567888886 3444444
Q ss_pred eCCCcE
Q 001184 1082 LTDGSV 1087 (1130)
Q Consensus 1082 ~~Dg~v 1087 (1130)
..-|+.
T Consensus 289 ~~~g~~ 294 (933)
T KOG1274|consen 289 TALGTL 294 (933)
T ss_pred eecccc
Confidence 444443
No 130
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2.3e-22 Score=206.71 Aligned_cols=223 Identities=16% Similarity=0.189 Sum_probs=191.7
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEec---
Q 001184 409 SISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDL--- 485 (1130)
Q Consensus 409 ~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~--- 485 (1130)
.+.|.|++-+|+|.+|+.|+..|.|++|.+.+|..+. .+.+|-..|+++.|+.||. +++|||.||.|.+|..
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~---v~~aHYQ~ITcL~fs~dgs--~iiTgskDg~V~vW~l~~l 155 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN---VLSAHYQSITCLKFSDDGS--HIITGSKDGAVLVWLLTDL 155 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHH---HHHhhccceeEEEEeCCCc--EEEecCCCccEEEEEEEee
Confidence 4679999999999999999999999999999999776 5689999999999999999 8999999999999972
Q ss_pred -------CCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEE
Q 001184 486 -------SGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFS 558 (1130)
Q Consensus 486 -------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 558 (1130)
+-++++.|..|+-+|+++...+.+....|+|+|.|.++++||+..+.....+..+ ..+.+++.+|.++.+++
T Consensus 156 v~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp-~si~av~lDpae~~~yi 234 (476)
T KOG0646|consen 156 VSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP-SSIKAVALDPAERVVYI 234 (476)
T ss_pred cccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC-CcceeEEEcccccEEEe
Confidence 2356788999999999999887766689999999999999999988777766543 46899999999999999
Q ss_pred eeecCCCCcEEEEeeCCCC----------------ceeEEEecccC-ceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 001184 559 CGTSKEGDSHLVEWNESEG----------------ALKRTYIGFRK-KSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVN 621 (1130)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~----------------~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 621 (1130)
|+. +|.|.+.++... ..+..+.||.+ ..|+|++++.||..|++|+.||.++|||..+.+
T Consensus 235 Gt~----~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q 310 (476)
T KOG0646|consen 235 GTE----EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ 310 (476)
T ss_pred cCC----cceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHH
Confidence 986 888888776432 23456777766 589999999999999999999999999999999
Q ss_pred eeEEEeccCCCCCcceEEEcCC
Q 001184 622 MLTSTEAEGGLPSLPRLRFNKE 643 (1130)
Q Consensus 622 ~~~~~~~~~~~~~i~~v~~s~~ 643 (1130)
+++++.... ++|+.+.+.|-
T Consensus 311 ~iRtl~~~k--gpVtnL~i~~~ 330 (476)
T KOG0646|consen 311 CIRTLQTSK--GPVTNLQINPL 330 (476)
T ss_pred HHHHHhhhc--cccceeEeecc
Confidence 998887322 37888888663
No 131
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=4.5e-22 Score=203.80 Aligned_cols=290 Identities=16% Similarity=0.243 Sum_probs=228.1
Q ss_pred ceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC--ceeEEEeccCCCCCcceEEEcCCCC-EEEEEeCCCcEEEEEcCCCc
Q 001184 589 KSAGVVQFDTTRNRILAAGEDNQIKFWDMDNV--NMLTSTEAEGGLPSLPRLRFNKEGN-LLVVTTADQGIKILANADGL 665 (1130)
Q Consensus 589 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~i~~v~~s~~~~-~l~~~~~dg~i~iw~~~~~~ 665 (1130)
+.|+++.|+|....+++++.||.++||.++.. ..++.+.... .+|.++.|.|+|. .+++++....++.||+.+.+
T Consensus 214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~--fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEK--FPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred CCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeecc--CccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 37999999999999999999999999988654 3445554443 3899999999999 89999999999999986651
Q ss_pred hhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCcccee
Q 001184 666 RALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWE 745 (1130)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~ 745 (1130)
..+ ++|.
T Consensus 292 -~~k--------------------------~~~~---------------------------------------------- 298 (514)
T KOG2055|consen 292 -VTK--------------------------LKPP---------------------------------------------- 298 (514)
T ss_pred -ccc--------------------------ccCC----------------------------------------------
Confidence 000 0000
Q ss_pred eccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCccee
Q 001184 746 LTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMT 825 (1130)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 825 (1130)
T Consensus 299 -------------------------------------------------------------------------------- 298 (514)
T KOG2055|consen 299 -------------------------------------------------------------------------------- 298 (514)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEe
Q 001184 826 NDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNV 904 (1130)
Q Consensus 826 ~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~ 904 (1130)
.+.....+....+|+++++|+..+ .|.|.+....+++.+.+++. .+.|..++|+. +++.|.+.+.+|.|++||+
T Consensus 299 ---~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki-eG~v~~~~fsS-dsk~l~~~~~~GeV~v~nl 373 (514)
T KOG2055|consen 299 ---YGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI-EGVVSDFTFSS-DSKELLASGGTGEVYVWNL 373 (514)
T ss_pred ---CCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee-ccEEeeEEEec-CCcEEEEEcCCceEEEEec
Confidence 000123455677889999999888 79999999999999988874 57799999998 7788888888999999999
Q ss_pred ecCeEEEEEecCCCCe--eEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEE
Q 001184 905 RVDEVKTKLKGHQKHI--TGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV 982 (1130)
Q Consensus 905 ~~~~~~~~l~~h~~~V--~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 982 (1130)
....++.++... +.| ++++.|++|.+||+|+..|.|-|||.++.-..........-......|+++.|++|.+.|+.
T Consensus 374 ~~~~~~~rf~D~-G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAi 452 (514)
T KOG2055|consen 374 RQNSCLHRFVDD-GSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAI 452 (514)
T ss_pred CCcceEEEEeec-CccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhh
Confidence 999999888732 333 67888999999999999999999997762211111000001112257899999999999997
Q ss_pred E---cCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 001184 983 N---HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDAD 1039 (1130)
Q Consensus 983 ~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~ 1039 (1130)
+ ..+.+++-.+.+......|......-+.|+||+|||.|.+||.|..+|.+.+|.+.
T Consensus 453 aS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 453 ASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred hhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 3 47889999999999998888876556789999999999999999999999999864
No 132
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=7e-22 Score=190.34 Aligned_cols=300 Identities=17% Similarity=0.237 Sum_probs=226.4
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcC-CCCE
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP-DGNF 423 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~ 423 (1130)
.|++.|+++...|...+++++|+.||.|.|||+++........+ +- -..|....+ --.+|.-.|.++-|-| |.-.
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~l-i~-k~~c~v~~~--h~~~Hky~iss~~WyP~DtGm 116 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGL-IA-KHKCIVAKQ--HENGHKYAISSAIWYPIDTGM 116 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccc-ee-heeeecccc--CCccceeeeeeeEEeeecCce
Confidence 49999999999997555799999999999999986542211000 00 001111111 2458899999999999 6678
Q ss_pred EEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCC-ceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEE
Q 001184 424 IGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNK-QLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVY 501 (1130)
Q Consensus 424 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~-~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~ 501 (1130)
+.+++.|.+++|||..+-+... .+ .-.+.|++-++||-.. +.++++|..|-.|++-| .+|.+-+++.||.+.|.
T Consensus 117 FtssSFDhtlKVWDtnTlQ~a~---~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vl 192 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTLQEAV---DF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVL 192 (397)
T ss_pred eecccccceEEEeecccceeeE---Ee-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceE
Confidence 8999999999999999865332 22 2456688889988543 44788899999999999 99999999999999999
Q ss_pred EEeecccCCccEEEEEecCCcEEEEEccCC-cceeee--------------cCCCccEEEEEEecCCCeEEEeeecCCCC
Q 001184 502 SVCPHQKENIHFIFSTAVDGKIKAWLYDNV-GSRVDY--------------DAPGLWCTTMLYSADGSRLFSCGTSKEGD 566 (1130)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~-~~~~~~--------------~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 566 (1130)
++.|+|..+ -.|++|+.||.|++||++.. .+...+ ..|.+.+..++|+.++.++++++. +
T Consensus 193 aV~Wsp~~e-~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt----d 267 (397)
T KOG4283|consen 193 AVEWSPSSE-WVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT----D 267 (397)
T ss_pred EEEeccCce-eEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC----c
Confidence 999998654 68999999999999999865 333222 334557999999999999999987 8
Q ss_pred cEEEEeeCCCCceeEEEec---ccC---ceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEE
Q 001184 567 SHLVEWNESEGALKRTYIG---FRK---KSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRF 640 (1130)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~---~~~---~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~ 640 (1130)
..+++|+...|+....-.+ +.. ..+. +. +.+...++.--.++.+.++++-.+..+..+..|.. .+.+.++
T Consensus 268 ~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k--~i~c~~~ 343 (397)
T KOG4283|consen 268 DRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLK--RINCAAY 343 (397)
T ss_pred cceEEeecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccc--eeeEEee
Confidence 8999999988764322111 111 0111 22 23334444455669999999999999999988844 7999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEc
Q 001184 641 NKEGNLLVVTTADQGIKILAN 661 (1130)
Q Consensus 641 s~~~~~l~~~~~dg~i~iw~~ 661 (1130)
.|+-+...+|..|+.+..|-.
T Consensus 344 ~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 344 RPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred cCchhhhhccccCCccccccc
Confidence 999999999999999999975
No 133
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.90 E-value=1e-21 Score=208.70 Aligned_cols=273 Identities=13% Similarity=0.155 Sum_probs=203.6
Q ss_pred CEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEe
Q 001184 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAF 428 (1130)
Q Consensus 349 ~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~ 428 (1130)
.|..++|-|||..+++.+ +..+.|||.+.|..+. .+++|...|.|++||.||+.+|+|+
T Consensus 14 ci~d~afkPDGsqL~lAA--g~rlliyD~ndG~llq-------------------tLKgHKDtVycVAys~dGkrFASG~ 72 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA--GSRLLVYDTSDGTLLQ-------------------PLKGHKDTVYCVAYAKDGKRFASGS 72 (1081)
T ss_pred chheeEECCCCceEEEec--CCEEEEEeCCCccccc-------------------ccccccceEEEEEEccCCceeccCC
Confidence 899999999999766655 4589999999998875 5899999999999999999999999
Q ss_pred CCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEecCCCcCEEEEeeccc
Q 001184 429 TKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQK 508 (1130)
Q Consensus 429 ~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~~h~~~v~~~~~~~~ 508 (1130)
.|+.|.+|+-+-...++ ..|++.|.|+.|+|-.. .++||+-. ..-+|....+.+...+ ...++.+++| .
T Consensus 73 aDK~VI~W~~klEG~Lk-----YSH~D~IQCMsFNP~~h--~LasCsLs-dFglWS~~qK~V~K~k-ss~R~~~CsW--t 141 (1081)
T KOG1538|consen 73 ADKSVIIWTSKLEGILK-----YSHNDAIQCMSFNPITH--QLASCSLS-DFGLWSPEQKSVSKHK-SSSRIICCSW--T 141 (1081)
T ss_pred CceeEEEecccccceee-----eccCCeeeEeecCchHH--Hhhhcchh-hccccChhhhhHHhhh-hheeEEEeee--c
Confidence 99999999976544333 35999999999999988 67888743 4568884444443332 3445666666 6
Q ss_pred CCccEEEEEecCCcEEEEEccCCcceeeec---CCCccEEEEEEecCCC-----eEEEeeecCCCCcEEEEeeCCCCcee
Q 001184 509 ENIHFIFSTAVDGKIKAWLYDNVGSRVDYD---APGLWCTTMLYSADGS-----RLFSCGTSKEGDSHLVEWNESEGALK 580 (1130)
Q Consensus 509 ~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~---~~~~~v~~~~~s~~~~-----~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1130)
.||++++.|-.+|+|.+-+-. ++....+. +...+|.+++|+|... .+++.-. ..++..+.+. |+.+
T Consensus 142 nDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW----~qTLSFy~Ls-G~~I 215 (1081)
T KOG1538|consen 142 NDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADW----GQTLSFYQLS-GKQI 215 (1081)
T ss_pred CCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEec----cceeEEEEec-ceee
Confidence 788999999999999887543 33333333 3556899999999643 3333322 3445555433 3333
Q ss_pred EEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEE
Q 001184 581 RTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILA 660 (1130)
Q Consensus 581 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~ 660 (1130)
..-..- +....|+.+.++|.+++.||.|+.+.+|.. .|-.+.++....+ .|..++..|+++.++.|+.||+|..|+
T Consensus 216 gk~r~L-~FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~~D~--WIWtV~~~PNsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 216 GKDRAL-NFDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGEQDS--WIWTVQAKPNSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred cccccC-CCCchhheeccCCcEEEEccCCCceEEEee-cCeEEeeccccce--eEEEEEEccCCceEEEEEccCeeehhh
Confidence 322211 124567889999999999999999999974 5556666554444 899999999999999999999999998
Q ss_pred cCC
Q 001184 661 NAD 663 (1130)
Q Consensus 661 ~~~ 663 (1130)
+..
T Consensus 292 l~f 294 (1081)
T KOG1538|consen 292 LIF 294 (1081)
T ss_pred hHH
Confidence 743
No 134
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=9.7e-22 Score=201.38 Aligned_cols=287 Identities=14% Similarity=0.211 Sum_probs=231.1
Q ss_pred CCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCC-EEE
Q 001184 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN-FIG 425 (1130)
Q Consensus 347 ~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~la 425 (1130)
.+.|++|.|+|.-. +|.+|+.||+++||.++...... ++ .+.-...+|.+.+|.|+|. .++
T Consensus 213 ~~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~N~~---------------lq--S~~l~~fPi~~a~f~p~G~~~i~ 274 (514)
T KOG2055|consen 213 HGGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKVNPK---------------LQ--SIHLEKFPIQKAEFAPNGHSVIF 274 (514)
T ss_pred cCCceEEEecCCCc-eEEEecCCCcEEEEEecCccChh---------------he--eeeeccCccceeeecCCCceEEE
Confidence 46999999999987 78999999999999997543221 01 1222356899999999999 899
Q ss_pred EEeCCCeEEEEEecCCccceeeeeeecCC-CCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEE
Q 001184 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHV-GGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSV 503 (1130)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~-~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~ 503 (1130)
+++.....+.||+.+.+.. +...+.++. ..+.....|++++ +|+..|..|.|.+.. .+++.+..++ -.+.|..+
T Consensus 275 ~s~rrky~ysyDle~ak~~-k~~~~~g~e~~~~e~FeVShd~~--fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~ 350 (514)
T KOG2055|consen 275 TSGRRKYLYSYDLETAKVT-KLKPPYGVEEKSMERFEVSHDSN--FIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDF 350 (514)
T ss_pred ecccceEEEEeeccccccc-cccCCCCcccchhheeEecCCCC--eEEEcccCceEEeehhhhhhhhheee-eccEEeeE
Confidence 9999999999999998743 333445554 4678889999999 899999999999999 8888888887 67889999
Q ss_pred eecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCc-cEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCC------
Q 001184 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGL-WCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE------ 576 (1130)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~------ 576 (1130)
+|+ .++..|++.+.+|.|.+||++...+...+...+. .-++++.++++.+||+|+. .|.|.|||..+
T Consensus 351 ~fs--Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~----~GiVNIYd~~s~~~s~~ 424 (514)
T KOG2055|consen 351 TFS--SDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSD----SGIVNIYDGNSCFASTN 424 (514)
T ss_pred EEe--cCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccC----cceEEEeccchhhccCC
Confidence 996 5668999999999999999999887777765544 4577888899999999986 89999999643
Q ss_pred CceeEEEecccCceeEEEEEcCCCCEEEEEe--CCCcEEEEeCCCCceeEEEecc-CCCCCcceEEEcCCCCEEEEEeCC
Q 001184 577 GALKRTYIGFRKKSAGVVQFDTTRNRILAAG--EDNQIKFWDMDNVNMLTSTEAE-GGLPSLPRLRFNKEGNLLVVTTAD 653 (1130)
Q Consensus 577 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~-~~~~~i~~v~~s~~~~~l~~~~~d 653 (1130)
.+++..+..... .|+.+.|+++.+.|+.++ .+..+++-.+.+.....-+... .....++|++|+|.+.+||+|..+
T Consensus 425 PkPik~~dNLtt-~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~ 503 (514)
T KOG2055|consen 425 PKPIKTVDNLTT-AITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEA 503 (514)
T ss_pred CCchhhhhhhhe-eeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCC
Confidence 455666555444 788999999999888877 4678999988877666555433 234468999999999999999999
Q ss_pred CcEEEEEcC
Q 001184 654 QGIKILANA 662 (1130)
Q Consensus 654 g~i~iw~~~ 662 (1130)
|.+.+|.+.
T Consensus 504 grv~l~kL~ 512 (514)
T KOG2055|consen 504 GRVHLFKLH 512 (514)
T ss_pred CceeeEeec
Confidence 999999863
No 135
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.89 E-value=4.9e-22 Score=204.65 Aligned_cols=281 Identities=15% Similarity=0.204 Sum_probs=223.2
Q ss_pred CccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCC-CCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecC
Q 001184 766 SASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQN-PSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKN 844 (1130)
Q Consensus 766 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~d 844 (1130)
|..-|.++.++...+.+++++. |.|+|||+...... |.... | .. .....|+++.+.||
T Consensus 418 HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqL---------d----------cl-~rdnyiRSckL~pd 476 (705)
T KOG0639|consen 418 HGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQL---------D----------CL-NRDNYIRSCKLLPD 476 (705)
T ss_pred cCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccc---------c----------cc-CcccceeeeEecCC
Confidence 7788889999998888888765 68999998764221 11100 0 00 34678999999999
Q ss_pred CCEEEEEe-CCeEEEEECCCceeE--EEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCee
Q 001184 845 DSYVMSAG-GGKVSLFNMMNFKVM--TTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHIT 921 (1130)
Q Consensus 845 g~~la~~~-dg~i~iwd~~~~~~~--~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~ 921 (1130)
|+.|++|+ -.++.|||+..-... ..+......+.+++.+| |.++.+++..||.|.|||+.+..++..|+||.+.+.
T Consensus 477 grtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGas 555 (705)
T KOG0639|consen 477 GRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS 555 (705)
T ss_pred CceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCCce
Confidence 99999999 578999999765443 33444445688899999 899999999999999999999999999999999999
Q ss_pred EEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE-cCCcEEEEECCCceeee
Q 001184 922 GLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-HETQLAIYDGSKMECIR 1000 (1130)
Q Consensus 922 ~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~d~~i~v~d~~~~~~~~ 1000 (1130)
||.+++||..|-+|+-|.+|+-||+..+.+. ..+.....|.++...|.+.+|+++ .++.+.|.....-+..
T Consensus 556 cIdis~dGtklWTGGlDntvRcWDlregrql-------qqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~ky- 627 (705)
T KOG0639|consen 556 CIDISKDGTKLWTGGLDNTVRCWDLREGRQL-------QQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKY- 627 (705)
T ss_pred eEEecCCCceeecCCCccceeehhhhhhhhh-------hhhhhhhhheecccCCCccceeeecccCcEEEEecCCccce-
Confidence 9999999999999999999999999986543 233444788999999999999997 5777888877644433
Q ss_pred eeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEE
Q 001184 1001 QWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAV 1080 (1130)
Q Consensus 1001 ~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 1080 (1130)
.+.. |.+.|.++.|.+.|+++++.+.|+.+..|...-|..+.+.. ..+++. ++.-+. |..++||
T Consensus 628 qlhl---heScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk----------E~SsVl--sCDIS~-ddkyIVT 691 (705)
T KOG0639|consen 628 QLHL---HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK----------ESSSVL--SCDISF-DDKYIVT 691 (705)
T ss_pred eecc---cccEEEEEEecccCceeeecCchhhhhhccCccccceeecc----------ccCcce--eeeecc-CceEEEe
Confidence 3333 37899999999999999999999999999999888776664 233343 343333 5689999
Q ss_pred EeCCCcEEEEeC
Q 001184 1081 GLTDGSVKVIEP 1092 (1130)
Q Consensus 1081 ~~~Dg~v~vW~~ 1092 (1130)
|+.|..--||.+
T Consensus 692 GSGdkkATVYeV 703 (705)
T KOG0639|consen 692 GSGDKKATVYEV 703 (705)
T ss_pred cCCCcceEEEEE
Confidence 999988888865
No 136
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.89 E-value=1.1e-21 Score=201.76 Aligned_cols=253 Identities=16% Similarity=0.264 Sum_probs=203.0
Q ss_pred ecCCCccEEEEEEcCC-CCEEEEEeCCCeEEEEEecCCcc-------ceeeeeeecCCCCeeEEEEecCCCceEEEEEcC
Q 001184 405 VKDSSISVSRVAWSPD-GNFIGVAFTKHLIHLYTYQGSND-------LCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD 476 (1130)
Q Consensus 405 ~~~h~~~V~~v~~spd-g~~las~~~d~~i~vwd~~~~~~-------~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~ 476 (1130)
...|.+.|+.+.+-|. ...+|+.+..+.|.|||...... ..+..++.||.+.-++++|++.... .+++++.
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g-~Lls~~~ 198 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEG-TLLSGSD 198 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccce-eEeeccC
Confidence 3478999999999995 55777888899999999865322 2233478999998899999998776 7999999
Q ss_pred CCcEEEEecC--CC------eeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEcc--CCcceeeecCCCccEEE
Q 001184 477 DKLIRVWDLS--GR------KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYD--NVGSRVDYDAPGLWCTT 546 (1130)
Q Consensus 477 d~~v~iwd~~--~~------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~--~~~~~~~~~~~~~~v~~ 546 (1130)
|++|++||.+ +. ....+.+|+..|..++|++... .++.+++.|+.+.|||++ +.+.......|...+.+
T Consensus 199 d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~-~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~ 277 (422)
T KOG0264|consen 199 DHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHE-DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNC 277 (422)
T ss_pred CCcEEEEeccccccCCccccceEEeecCCcceehhhccccch-hhheeecCCCeEEEEEcCCCCCCCcccccccCCceeE
Confidence 9999999932 22 3456789999999999998654 789999999999999999 45556677889999999
Q ss_pred EEEecCCC-eEEEeeecCCCCcEEEEeeCCCC-ceeEEEecccCceeEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCce-
Q 001184 547 MLYSADGS-RLFSCGTSKEGDSHLVEWNESEG-ALKRTYIGFRKKSAGVVQFDTTRN-RILAAGEDNQIKFWDMDNVNM- 622 (1130)
Q Consensus 547 ~~~s~~~~-~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~- 622 (1130)
++|+|-+. .||+++. |++|.+||+++- +.+.++.+|.+ .|..+.|+|... .|++++.|+.+.|||+..-..
T Consensus 278 ~~fnp~~~~ilAT~S~----D~tV~LwDlRnL~~~lh~~e~H~d-ev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~e 352 (422)
T KOG0264|consen 278 VAFNPFNEFILATGSA----DKTVALWDLRNLNKPLHTFEGHED-EVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEE 352 (422)
T ss_pred EEeCCCCCceEEeccC----CCcEEEeechhcccCceeccCCCc-ceEEEEeCCCCCceeEecccCCcEEEEeccccccc
Confidence 99999655 4556655 999999999874 56788888777 899999999875 778889999999999864221
Q ss_pred -----------eEEEeccCCCCCcceEEEcCCCC-EEEEEeCCCcEEEEEcCCC
Q 001184 623 -----------LTSTEAEGGLPSLPRLRFNKEGN-LLVVTTADQGIKILANADG 664 (1130)
Q Consensus 623 -----------~~~~~~~~~~~~i~~v~~s~~~~-~l~~~~~dg~i~iw~~~~~ 664 (1130)
.-.+...+|...|..+.|+|+.. .+++.+.|+.+.||.....
T Consensus 353 q~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~ 406 (422)
T KOG0264|consen 353 QSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAEN 406 (422)
T ss_pred cChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecccc
Confidence 12244556777899999999765 4677889999999997643
No 137
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.89 E-value=3.6e-21 Score=185.46 Aligned_cols=247 Identities=16% Similarity=0.238 Sum_probs=187.4
Q ss_pred CCCccceEEEEEeccCCeEEEeee-CCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEe
Q 001184 764 TDSASKVARLLYTNSGIGILALWS-NGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALS 842 (1130)
Q Consensus 764 ~~~~~~i~~l~~s~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s 842 (1130)
.+|...|..+.|-|-..-+++.++ |.++++||.++-.... + + ..++.|.+-++|
T Consensus 98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~-------------~----------F--~me~~VYshamS 152 (397)
T KOG4283|consen 98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAV-------------D----------F--KMEGKVYSHAMS 152 (397)
T ss_pred ccceeeeeeeEEeeecCceeecccccceEEEeecccceeeE-------------E----------e--ecCceeehhhcC
Confidence 558888999998886666666555 9999999876522110 0 0 235566777777
Q ss_pred cCCC---EEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecC-eEEEE-----
Q 001184 843 KNDS---YVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVD-EVKTK----- 912 (1130)
Q Consensus 843 ~dg~---~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~-~~~~~----- 912 (1130)
|-.. ++|+|. +-.|++-|+.+|.+-.++.+|.+.|.++.|+|...-+||+|+.||.|++||+... -+...
T Consensus 153 p~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn 232 (397)
T KOG4283|consen 153 PMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHN 232 (397)
T ss_pred hhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeeccc
Confidence 6433 666776 5679999999999999999999999999999977788999999999999999743 22222
Q ss_pred ---------EecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE
Q 001184 913 ---------LKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN 983 (1130)
Q Consensus 913 ---------l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~ 983 (1130)
-..|.+.|.+++|+.||.+|++++.|..+++|+..+|+....................+.--..+.++..-
T Consensus 233 ~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p 312 (397)
T KOG4283|consen 233 TKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFP 312 (397)
T ss_pred CccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEe
Confidence 23688899999999999999999999999999999877543332222211111222223322233344446
Q ss_pred cCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeC
Q 001184 984 HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDA 1038 (1130)
Q Consensus 984 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~ 1038 (1130)
.++.+.++.+-.|..++.+..| ...|.+.+|-||=+.+.++..|+.|..|-.
T Consensus 313 ~~~~lall~~~sgs~ir~l~~h---~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 313 NDGSLALLNLLEGSFVRRLSTH---LKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred cCCeEEEEEccCceEEEeeecc---cceeeEEeecCchhhhhccccCCccccccc
Confidence 6799999999999999999887 789999999999999999999999999976
No 138
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=4.6e-20 Score=203.77 Aligned_cols=205 Identities=16% Similarity=0.198 Sum_probs=153.4
Q ss_pred eEEEEecCCCEEEEEe--CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCC-cEEEEEeecCeEEEEE
Q 001184 837 PCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDS-TIQIYNVRVDEVKTKL 913 (1130)
Q Consensus 837 ~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg-~v~iwd~~~~~~~~~l 913 (1130)
..++++|+++.+++++ ++.|++||+.+.+.+..+.. ...+.+++|+| ++.+++++..++ .+.+||..+++....+
T Consensus 76 ~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~ 153 (300)
T TIGR03866 76 ELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNV 153 (300)
T ss_pred cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEE
Confidence 3567888888776553 68899999998888777753 23468899999 888888888765 5678899888776655
Q ss_pred ecCCCCeeEEEEccCCCeEEEE-eCCCcEEEEECCCCcccceeeEeccCCC-CCCCeEEEEEcCCCcEEEE--EcCCcEE
Q 001184 914 KGHQKHITGLAFSTNLNILVSS-GSDAQLIFWNTDTWEKRKSIAIQLPAGK-LPVGETRVQFHSDQVRLLV--NHETQLA 989 (1130)
Q Consensus 914 ~~h~~~V~~l~~s~dg~~L~s~-s~Dg~i~vwd~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~~--~~d~~i~ 989 (1130)
... ..+.+++|+|||++|+.+ ..++.|++||+.+++............. .......++|+|+++++++ +.++.+.
T Consensus 154 ~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~ 232 (300)
T TIGR03866 154 LVD-QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVA 232 (300)
T ss_pred EcC-CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEE
Confidence 433 346789999999988654 4699999999998765443322211111 1123456889999998655 4567899
Q ss_pred EEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEe-CCCcEEEEeCCCcccccccC
Q 001184 990 IYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATF-TDGSIGVFDADSLRLRCRIA 1048 (1130)
Q Consensus 990 v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~-~Dg~i~vwd~~~~~~~~~~~ 1048 (1130)
+||..+++.+..+.. ...+.+++|+|+|++|++++ .+|.|+|||+.+++.+.++.
T Consensus 233 v~d~~~~~~~~~~~~----~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 233 VVDAKTYEVLDYLLV----GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred EEECCCCcEEEEEEe----CCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 999999888766533 34788999999999998864 68999999999999887775
No 139
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=4.5e-21 Score=197.31 Aligned_cols=291 Identities=15% Similarity=0.213 Sum_probs=218.1
Q ss_pred CcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCceeE-EEeccCCCCCcceEEEcCC
Q 001184 566 DSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAG-EDNQIKFWDMDNVNMLT-STEAEGGLPSLPRLRFNKE 643 (1130)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~-~~~~~~~~~~i~~v~~s~~ 643 (1130)
...+.+||+++|.....+.+.....-..+..- .+.+++++. ....|.+|.+....... .+..+ +++.+++-+|+
T Consensus 17 ~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~P---g~v~al~s~n~ 92 (476)
T KOG0646|consen 17 PINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLP---GPVHALASSNL 92 (476)
T ss_pred CcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccc---cceeeeecCCC
Confidence 56699999999999999887522122222111 235666655 44578999987655444 22222 26899999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCc
Q 001184 644 GNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADS 723 (1130)
Q Consensus 644 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1130)
|.+|+.|+..|.|++|.+.+| .++..+.
T Consensus 93 G~~l~ag~i~g~lYlWelssG-~LL~v~~--------------------------------------------------- 120 (476)
T KOG0646|consen 93 GYFLLAGTISGNLYLWELSSG-ILLNVLS--------------------------------------------------- 120 (476)
T ss_pred ceEEEeecccCcEEEEEeccc-cHHHHHH---------------------------------------------------
Confidence 999999999999999999998 4443331
Q ss_pred cccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCC
Q 001184 724 AARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNP 803 (1130)
Q Consensus 724 ~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~ 803 (1130)
+|...|+++.|+.||..+++++.||.|.+|.+..-...
T Consensus 121 -----------------------------------------aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a- 158 (476)
T KOG0646|consen 121 -----------------------------------------AHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSA- 158 (476)
T ss_pred -----------------------------------------hhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccc-
Confidence 27889999999999999999999999999986532110
Q ss_pred CcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCC--CEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEE
Q 001184 804 SGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKND--SYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFL 880 (1130)
Q Consensus 804 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg--~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l 880 (1130)
..+...........|.-+|+.+.+.+.| .++++++ |.++++||+..+.++.++. .+..+.++
T Consensus 159 --------------~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av 223 (476)
T KOG0646|consen 159 --------------DNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAV 223 (476)
T ss_pred --------------ccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeE
Confidence 0011111111223688999999987764 4777777 9999999999999988876 46679999
Q ss_pred EEeCCCCcEEEEEeCCCcEEEEEeecC----------------eEEEEEecCCC--CeeEEEEccCCCeEEEEeCCCcEE
Q 001184 881 AFHPQDNNIIAIGMEDSTIQIYNVRVD----------------EVKTKLKGHQK--HITGLAFSTNLNILVSSGSDAQLI 942 (1130)
Q Consensus 881 ~~sp~~~~~lasg~~dg~v~iwd~~~~----------------~~~~~l~~h~~--~V~~l~~s~dg~~L~s~s~Dg~i~ 942 (1130)
+.+| ..+.+++|+.+|.|.+.++... ..+..+.||.+ +|+|++.+-||..|++|+.||.|+
T Consensus 224 ~lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~Vc 302 (476)
T KOG0646|consen 224 ALDP-AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVC 302 (476)
T ss_pred EEcc-cccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEE
Confidence 9999 8999999999999999877532 34566789998 999999999999999999999999
Q ss_pred EEECCCCcccceeeEeccCCCCCCCeEEEEEcCC
Q 001184 943 FWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSD 976 (1130)
Q Consensus 943 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 976 (1130)
|||+.+.++.+.... ..++|+.+.+.|-
T Consensus 303 vWdi~S~Q~iRtl~~------~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 303 VWDIYSKQCIRTLQT------SKGPVTNLQINPL 330 (476)
T ss_pred EEecchHHHHHHHhh------hccccceeEeecc
Confidence 999999776554431 2266777777554
No 140
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.89 E-value=2.7e-21 Score=198.04 Aligned_cols=293 Identities=18% Similarity=0.252 Sum_probs=225.2
Q ss_pred CCCCEEEEEEecCCC-eEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcC-CCCE
Q 001184 346 QGSSVVSMDFHPFHH-TLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP-DGNF 423 (1130)
Q Consensus 346 h~~~V~~v~fspdg~-~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~ 423 (1130)
+..+|++++|+|... .++|+|..-|.|=+||+.+.+..... ...+..|.++|.++.|+| +-..
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~---------------v~~f~~hs~~Vs~l~F~P~n~s~ 249 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDG---------------VYLFTPHSGPVSGLKFSPANTSQ 249 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCc---------------eEEeccCCccccceEecCCChhh
Confidence 788999999999876 78999999999999999644333221 115779999999999999 4568
Q ss_pred EEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe--cCCCeeeEecCCCcCEE
Q 001184 424 IGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQFEGHEAPVY 501 (1130)
Q Consensus 424 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd--~~~~~~~~~~~h~~~v~ 501 (1130)
+.+.+.||+|+.-|++++. ......+......+.++.|+.+.. .++.+..=|...+|| ..+.....+.-|...|.
T Consensus 250 i~ssSyDGtiR~~D~~~~i-~e~v~s~~~d~~~fs~~d~~~e~~--~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~ 326 (498)
T KOG4328|consen 250 IYSSSYDGTIRLQDFEGNI-SEEVLSLDTDNIWFSSLDFSAESR--SVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKIT 326 (498)
T ss_pred eeeeccCceeeeeeecchh-hHHHhhcCccceeeeeccccCCCc--cEEEeecccceEEEEeecCCccchhhhhhhcccc
Confidence 8899999999999998864 233334444556788899999888 677787777999999 56666778888999999
Q ss_pred EEeecccCCccEEEEEecCCcEEEEEccCCcce----eeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCC--
Q 001184 502 SVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSR----VDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES-- 575 (1130)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-- 575 (1130)
+++++|... .+++|+|.|++.+|||++..... .....|...|.+..|||++-.|++.+. |..|++||..
T Consensus 327 sv~~NP~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~----D~~IRv~dss~~ 401 (498)
T KOG4328|consen 327 SVALNPVCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQ----DNEIRVFDSSCI 401 (498)
T ss_pred eeecCCCCc-hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeecc----CCceEEeecccc
Confidence 999998654 78999999999999999875433 345568889999999999888888876 8999999973
Q ss_pred --CCceeEEEecccCc----eeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcce-EEEcCCCC-EE
Q 001184 576 --EGALKRTYIGFRKK----SAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPR-LRFNKEGN-LL 647 (1130)
Q Consensus 576 --~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~-v~~s~~~~-~l 647 (1130)
.-.+..++...+.. ...-..|.|+.+++++|-.-..|-|+|-..++.+..+..+... .|.+ ..|+|-+. ++
T Consensus 402 sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~-tI~~vn~~HP~~~~~~ 480 (498)
T KOG4328|consen 402 SAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESS-TIPSVNEFHPMRDTLA 480 (498)
T ss_pred cccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcccc-ccccceeeccccccee
Confidence 23333333321111 1223679999999999999999999999999888776544332 3444 57999777 55
Q ss_pred EEEeCCCcEEEEEcC
Q 001184 648 VVTTADQGIKILANA 662 (1130)
Q Consensus 648 ~~~~~dg~i~iw~~~ 662 (1130)
+.++..|.|.||--+
T Consensus 481 aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 481 AGGNSSGKIYVFTNK 495 (498)
T ss_pred ccCCccceEEEEecC
Confidence 556677888888643
No 141
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=1.2e-22 Score=219.06 Aligned_cols=235 Identities=18% Similarity=0.344 Sum_probs=211.2
Q ss_pred ecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe
Q 001184 405 VKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD 484 (1130)
Q Consensus 405 ~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd 484 (1130)
+..|...|.|+..-..++.+++|+.|..+-+|.+.....+. .+.+|..+|.++.|+++.. +|++|+.+|+|++||
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~---S~~~hespIeSl~f~~~E~--LlaagsasgtiK~wD 98 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT---SLTGHESPIESLTFDTSER--LLAAGSASGTIKVWD 98 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh---eeeccCCcceeeecCcchh--hhcccccCCceeeee
Confidence 44788899999987789999999999999999987655443 5889999999999999998 899999999999999
Q ss_pred -cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecC
Q 001184 485 -LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSK 563 (1130)
Q Consensus 485 -~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1130)
..++.++++.||...+.++.|+|.. .+.++|+.|+.+++||.+..++...+..|...+..+.|+|+|++++.++.
T Consensus 99 leeAk~vrtLtgh~~~~~sv~f~P~~--~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~e-- 174 (825)
T KOG0267|consen 99 LEEAKIVRTLTGHLLNITSVDFHPYG--EFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGE-- 174 (825)
T ss_pred hhhhhhhhhhhccccCcceeeeccce--EEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCC--
Confidence 8899999999999999999997654 78899999999999999999999999999999999999999999999985
Q ss_pred CCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCC
Q 001184 564 EGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKE 643 (1130)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~ 643 (1130)
|..+++||...|+....|.+|.. .+..+.|+|..-.++.|+.|+++++||+++.+.+...... ...|.+..|+|+
T Consensus 175 --d~tvki~d~~agk~~~ef~~~e~-~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~--~~~v~~~~fn~~ 249 (825)
T KOG0267|consen 175 --DNTVKIWDLTAGKLSKEFKSHEG-KVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE--TDGVRSLAFNPD 249 (825)
T ss_pred --cceeeeecccccccccccccccc-cccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc--cCCceeeeecCC
Confidence 79999999999999999998776 7888999998888999999999999999998888776655 347999999999
Q ss_pred CCEEEEEeCC
Q 001184 644 GNLLVVTTAD 653 (1130)
Q Consensus 644 ~~~l~~~~~d 653 (1130)
+..+++|...
T Consensus 250 ~~~~~~G~q~ 259 (825)
T KOG0267|consen 250 GKIVLSGEQI 259 (825)
T ss_pred ceeeecCchh
Confidence 9988888654
No 142
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=8.8e-21 Score=184.71 Aligned_cols=251 Identities=13% Similarity=0.226 Sum_probs=191.2
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCee
Q 001184 412 VSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKL 490 (1130)
Q Consensus 412 V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~ 490 (1130)
..|+.||+.|.+||+|+.||.|.|||+.+...- ..+.+|..+|++++||+||+ .|+|+|.|..|.+|| .+|.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~ia---r~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIA---RMLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchh---hhhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCCce
Confidence 789999999999999999999999999986533 36889999999999999999 899999999999999 999999
Q ss_pred eEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceee-ecCCCc---cEEEEEEecCCCeEEEeeecCCCC
Q 001184 491 FQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVD-YDAPGL---WCTTMLYSADGSRLFSCGTSKEGD 566 (1130)
Q Consensus 491 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~-~~~~~~---~v~~~~~s~~~~~l~~~~~~~~~~ 566 (1130)
+.++ ...+|+.+.|+|......+++--.. .-.+-++........ ....+. ...+..|.+.|+++++|.. .
T Consensus 101 ~rir-f~spv~~~q~hp~k~n~~va~~~~~-sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts----K 174 (405)
T KOG1273|consen 101 KRIR-FDSPVWGAQWHPRKRNKCVATIMEE-SPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS----K 174 (405)
T ss_pred eEEE-ccCccceeeeccccCCeEEEEEecC-CcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecC----c
Confidence 9887 7899999999998776655554333 344445544222221 111111 2233468999999999975 9
Q ss_pred cEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-------cee--EEEeccCCCCCcce
Q 001184 567 SHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNV-------NML--TSTEAEGGLPSLPR 637 (1130)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-------~~~--~~~~~~~~~~~i~~ 637 (1130)
|.+.++|..+.+++..++-.....|..+.++..|++++.-+.|+.||.|+...- ++. +.+..--....-.+
T Consensus 175 Gkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ 254 (405)
T KOG1273|consen 175 GKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK 254 (405)
T ss_pred ceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh
Confidence 999999999999998887665457888999999999999999999999997631 111 11111111113468
Q ss_pred EEEcCCCCEEEEEeC-CCcEEEEEcCCCchhhhhhccc
Q 001184 638 LRFNKEGNLLVVTTA-DQGIKILANADGLRALRAIETR 674 (1130)
Q Consensus 638 v~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~ 674 (1130)
++|+.+|.+++.++. ...++||.-..| .+++.+.|.
T Consensus 255 ccfs~dgeYv~a~s~~aHaLYIWE~~~G-sLVKILhG~ 291 (405)
T KOG1273|consen 255 CCFSGDGEYVCAGSARAHALYIWEKSIG-SLVKILHGT 291 (405)
T ss_pred eeecCCccEEEeccccceeEEEEecCCc-ceeeeecCC
Confidence 899999999887764 467999998777 566655543
No 143
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.87 E-value=1.1e-19 Score=200.76 Aligned_cols=268 Identities=12% Similarity=0.079 Sum_probs=197.3
Q ss_pred EEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEE-EEEeCCCeEEEEEecC
Q 001184 362 LLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI-GVAFTKHLIHLYTYQG 440 (1130)
Q Consensus 362 llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l-as~~~d~~i~vwd~~~ 440 (1130)
++++++.|+.|++||+.+++.+. .+..+. .+.+++|+|||+.+ ++++.++.|++||..+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~-------------------~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~ 62 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTR-------------------TFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLAT 62 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEE-------------------EEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCC
Confidence 68899999999999999887654 233343 46789999999976 5667889999999998
Q ss_pred CccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEec
Q 001184 441 SNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAV 519 (1130)
Q Consensus 441 ~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~ 519 (1130)
++... .+..+.. +..++|+|+++. ++++++.|+.+++|| .+++.+..+.. ...+.+++|++ ++.++++++.
T Consensus 63 ~~~~~---~~~~~~~-~~~~~~~~~g~~-l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~--dg~~l~~~~~ 134 (300)
T TIGR03866 63 GEVIG---TLPSGPD-PELFALHPNGKI-LYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSP--DGKIVVNTSE 134 (300)
T ss_pred CcEEE---eccCCCC-ccEEEECCCCCE-EEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECC--CCCEEEEEec
Confidence 76543 3333333 567899999984 345566789999999 66666666653 34467788854 5678888877
Q ss_pred CC-cEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccC------ceeE
Q 001184 520 DG-KIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRK------KSAG 592 (1130)
Q Consensus 520 dg-~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~------~~v~ 592 (1130)
++ .+.+||.++......... ...+..++|+|+++++++++. .++.|++||.++++.+..+..+.. ....
T Consensus 135 ~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~---~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (300)
T TIGR03866 135 TTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSE---IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPV 210 (300)
T ss_pred CCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcC---CCCEEEEEEcCcceeeeeeeecccccccccCCcc
Confidence 65 567789877655443322 234578999999998876542 378999999999987776542211 1123
Q ss_pred EEEEcCCCCEEEE-EeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEE-eCCCcEEEEEcCCC
Q 001184 593 VVQFDTTRNRILA-AGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVT-TADQGIKILANADG 664 (1130)
Q Consensus 593 ~~~~~~~~~~l~~-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~-~~dg~i~iw~~~~~ 664 (1130)
.++|+|+++++++ .+.++.+.+||..+++.+..+.. ++ .+.+++|+|+|++|+++ ..++.|.+||+.++
T Consensus 211 ~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~--~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~ 281 (300)
T TIGR03866 211 GIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLV-GQ--RVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL 281 (300)
T ss_pred ceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEe-CC--CcceEEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence 5789999998655 45567899999999887765543 22 57899999999999886 46899999999887
No 144
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.87 E-value=5.2e-20 Score=195.91 Aligned_cols=468 Identities=16% Similarity=0.165 Sum_probs=291.9
Q ss_pred CeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcce
Q 001184 456 GVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSR 534 (1130)
Q Consensus 456 ~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~ 534 (1130)
.|..++|-|||.+++++++ ..+.+|| .+|..+.++++|.+.|++++|+ .||+.+++|+.|..|.+|.-.-.+.
T Consensus 14 ci~d~afkPDGsqL~lAAg---~rlliyD~ndG~llqtLKgHKDtVycVAys--~dGkrFASG~aDK~VI~W~~klEG~- 87 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG---SRLLVYDTSDGTLLQPLKGHKDTVYCVAYA--KDGKRFASGSADKSVIIWTSKLEGI- 87 (1081)
T ss_pred chheeEECCCCceEEEecC---CEEEEEeCCCcccccccccccceEEEEEEc--cCCceeccCCCceeEEEecccccce-
Confidence 6999999999997433333 4799999 9999999999999999999995 6779999999999999997543222
Q ss_pred eeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEE
Q 001184 535 VDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKF 614 (1130)
Q Consensus 535 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v 614 (1130)
.. ..|+..|.|+.|+|-...|++|+- ...-+|........+ .. ....+.+++|..||++++.|-.+|+|.+
T Consensus 88 Lk-YSH~D~IQCMsFNP~~h~LasCsL-----sdFglWS~~qK~V~K-~k--ss~R~~~CsWtnDGqylalG~~nGTIsi 158 (1081)
T KOG1538|consen 88 LK-YSHNDAIQCMSFNPITHQLASCSL-----SDFGLWSPEQKSVSK-HK--SSSRIICCSWTNDGQYLALGMFNGTISI 158 (1081)
T ss_pred ee-eccCCeeeEeecCchHHHhhhcch-----hhccccChhhhhHHh-hh--hheeEEEeeecCCCcEEEEeccCceEEe
Confidence 22 347788999999999999999984 456788866544332 21 2236788999999999999999999999
Q ss_pred EeCCCCceeEEEeccCCCCCcceEEEcCCC-----CEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccc
Q 001184 615 WDMDNVNMLTSTEAEGGLPSLPRLRFNKEG-----NLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPG 689 (1130)
Q Consensus 615 wd~~~~~~~~~~~~~~~~~~i~~v~~s~~~-----~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (1130)
-+....+.+..-...+...+|.+++|+|.. ..+++.....++.++.+.... .
T Consensus 159 RNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~-I---------------------- 215 (1081)
T KOG1538|consen 159 RNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ-I---------------------- 215 (1081)
T ss_pred ecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEeccee-e----------------------
Confidence 876544444444444566789999999954 345555555555555543220 0
Q ss_pred cceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccc
Q 001184 690 SAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASK 769 (1130)
Q Consensus 690 ~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 769 (1130)
|. . ..-.-.
T Consensus 216 -------------------------------------------------gk--------------~--------r~L~Fd 224 (1081)
T KOG1538|consen 216 -------------------------------------------------GK--------------D--------RALNFD 224 (1081)
T ss_pred -------------------------------------------------cc--------------c--------ccCCCC
Confidence 00 0 001122
Q ss_pred eEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEE
Q 001184 770 VARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVM 849 (1130)
Q Consensus 770 i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la 849 (1130)
-.++.+.++|.+++.||.|+.+.+|.-. |..+.. + +....+|+.++..|+++.++
T Consensus 225 P~CisYf~NGEy~LiGGsdk~L~~fTR~-----------------------GvrLGT-v-g~~D~WIWtV~~~PNsQ~v~ 279 (1081)
T KOG1538|consen 225 PCCISYFTNGEYILLGGSDKQLSLFTRD-----------------------GVRLGT-V-GEQDSWIWTVQAKPNSQYVV 279 (1081)
T ss_pred chhheeccCCcEEEEccCCCceEEEeec-----------------------CeEEee-c-cccceeEEEEEEccCCceEE
Confidence 3478899999999999999999998521 111111 1 13678999999999999999
Q ss_pred EEe-CCeEEEEECCCceeEEEEe-------------------CCCCCe------EEEEEeCCCCcEEEEEeCCCcEEEEE
Q 001184 850 SAG-GGKVSLFNMMNFKVMTTFM-------------------SPPPAS------TFLAFHPQDNNIIAIGMEDSTIQIYN 903 (1130)
Q Consensus 850 ~~~-dg~i~iwd~~~~~~~~~~~-------------------~~~~~i------~~l~~sp~~~~~lasg~~dg~v~iwd 903 (1130)
.|+ ||+|-.|++.......... +....| ..+++ -.+.||+--.+ .|.||.
T Consensus 280 ~GCqDGTiACyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiai---YrnrLAVQLpe-ki~iYe 355 (1081)
T KOG1538|consen 280 VGCQDGTIACYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAI---YRNRLAVQLPE-KILIYE 355 (1081)
T ss_pred EEEccCeeehhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHh---hhhhheecccc-eEEEEe
Confidence 998 9999999975322211110 001111 11222 12345555444 488888
Q ss_pred eecCeEEEE-EecCCCCeeEEEEc---cCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCc-
Q 001184 904 VRVDEVKTK-LKGHQKHITGLAFS---TNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQV- 978 (1130)
Q Consensus 904 ~~~~~~~~~-l~~h~~~V~~l~~s---~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~- 978 (1130)
+.+++.... ++-...-+..+.+| -.++.++. +.+..+.-+|+..-.++....-.. ..-..+.=-|-|+
T Consensus 356 l~se~~~~mhY~v~ekI~kkf~cSLlVVc~~HiVl-CqekrLqClDF~Gvk~ReW~M~S~------iRYikV~GGP~gRE 428 (1081)
T KOG1538|consen 356 LYSEDLSDMHYRVKEKIIKKFECSLLVVCANHIVL-CQEKRLQCLDFSGVKEREWQMESL------IRYIKVIGGPPGRE 428 (1081)
T ss_pred ccccccccchhHHHHHHHhhccceEEEEEcCeEEE-EcccceeeecccchhhhhhhHHHH------HHhhhhhcCCCCcc
Confidence 776543211 00000001111111 11334433 346667777776533221100000 0000011112222
Q ss_pred EEEE-EcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCC
Q 001184 979 RLLV-NHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQAS 1057 (1130)
Q Consensus 979 ~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 1057 (1130)
-|++ -.+|.+.-.=+.+.-++..... ...|.|+.++...+.||+..+.++..++|+.+++.+.+-..
T Consensus 429 gL~vGlknGqV~kiF~dN~~PiLl~~~----~tAvrClDINA~R~kLAvVDD~~~c~v~DI~t~elL~QEpg-------- 496 (1081)
T KOG1538|consen 429 GLLVGLKNGQVLKIFVDNLFPILLLKQ----ATAVRCLDINASRKKLAVVDDNDTCLVYDIDTKELLFQEPG-------- 496 (1081)
T ss_pred eeEEEecCCcEEEEEecCCchhheecc----cceeEEeeccCCcceEEEEccCCeEEEEEccCCceEeecCC--------
Confidence 2233 3455443222232222222111 46899999999999999999999999999999998876542
Q ss_pred CCCceeeeEEEEEcCCCCCEEEEEeCCCcEE
Q 001184 1058 PNSQTVFPLVVTSHPQEPNQLAVGLTDGSVK 1088 (1130)
Q Consensus 1058 ~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~ 1088 (1130)
+.++.|+....++|+..+. |.+.
T Consensus 497 -------~nSV~wNT~~E~MlcfT~~-g~L~ 519 (1081)
T KOG1538|consen 497 -------ANSVAWNTQCEDMLCFTGG-GYLN 519 (1081)
T ss_pred -------CceEEeeccccceEEEecC-CceE
Confidence 2346777766666666655 4343
No 145
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=3.9e-20 Score=195.26 Aligned_cols=316 Identities=16% Similarity=0.234 Sum_probs=229.7
Q ss_pred eeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEE
Q 001184 448 LEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAW 526 (1130)
Q Consensus 448 ~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vw 526 (1130)
..+.||++.|.+|+..|.|. +|++|+.||+|+||. .+|+|++++. ..+.|.|++|+|.++..+|+.+-.+. +.+-
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~--wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~-~~iv 469 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGE--WLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGEC-VLIV 469 (733)
T ss_pred eeEeccCCeEEEEEecCCcc--eeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCc-eEEe
Confidence 45789999999999999999 899999999999999 9999999887 56789999999998877777766554 5444
Q ss_pred EccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCc----eeEEEecccCceeEEEEEcCCCCE
Q 001184 527 LYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA----LKRTYIGFRKKSAGVVQFDTTRNR 602 (1130)
Q Consensus 527 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~ 602 (1130)
+..-+..+.. -+....|+.+-.....++.+..|.-...+ -++....|. ..|..+.|+..|.|
T Consensus 470 np~~G~~~e~-------------~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~-k~i~~vtWHrkGDY 535 (733)
T KOG0650|consen 470 NPIFGDRLEV-------------GPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHP-KSIRQVTWHRKGDY 535 (733)
T ss_pred Cccccchhhh-------------cchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecC-CccceeeeecCCce
Confidence 4332211110 01111222221112235567788754211 122333333 37999999999999
Q ss_pred EEEEeC---CCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccc
Q 001184 603 ILAAGE---DNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETS 679 (1130)
Q Consensus 603 l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 679 (1130)
|++... ...|.|.++........+....+ .+.++.|+|...+|++++. ..|+|||+... ++.+.+.
T Consensus 536 latV~~~~~~~~VliHQLSK~~sQ~PF~kskG--~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kq-elvKkL~------- 604 (733)
T KOG0650|consen 536 LATVMPDSGNKSVLIHQLSKRKSQSPFRKSKG--LVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQ-ELVKKLL------- 604 (733)
T ss_pred EEEeccCCCcceEEEEecccccccCchhhcCC--ceeEEEecCCCceEEEEec-cceEEEehhHH-HHHHHHh-------
Confidence 999754 35688999877665544433333 6899999999999988864 58999998664 3333221
Q ss_pred cccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEE
Q 001184 680 RASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVA 759 (1130)
Q Consensus 680 ~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~ 759 (1130)
T Consensus 605 -------------------------------------------------------------------------------- 604 (733)
T KOG0650|consen 605 -------------------------------------------------------------------------------- 604 (733)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEE
Q 001184 760 MPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCV 839 (1130)
Q Consensus 760 ~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l 839 (1130)
.....|..+
T Consensus 605 -----------------------------------------------------------------------tg~kwiS~m 613 (733)
T KOG0650|consen 605 -----------------------------------------------------------------------TGSKWISSM 613 (733)
T ss_pred -----------------------------------------------------------------------cCCeeeeee
Confidence 013345667
Q ss_pred EEecCCCEEEEEe-CCeEEEEECCC-ceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEee------cC---e
Q 001184 840 ALSKNDSYVMSAG-GGKVSLFNMMN-FKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVR------VD---E 908 (1130)
Q Consensus 840 ~~s~dg~~la~~~-dg~i~iwd~~~-~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~------~~---~ 908 (1130)
+++|.|.-|+.++ |+.+..+|+.- .+..+++..|...+++++|++ .-.++++|+.||++.|+.-. .. -
T Consensus 614 sihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~-ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliV 692 (733)
T KOG0650|consen 614 SIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHK-RYPLFASGSDDGTVIVFHGMVYNDLLQNPLIV 692 (733)
T ss_pred eecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcc-ccceeeeecCCCcEEEEeeeeehhhhcCCceE
Confidence 7777777777776 77788888753 356778888999999999999 88899999999999998532 11 3
Q ss_pred EEEEEecCCCC----eeEEEEccCCCeEEEEeCCCcEEEE
Q 001184 909 VKTKLKGHQKH----ITGLAFSTNLNILVSSGSDAQLIFW 944 (1130)
Q Consensus 909 ~~~~l~~h~~~----V~~l~~s~dg~~L~s~s~Dg~i~vw 944 (1130)
++..+++|... |....|+|...+|++++.||+|++|
T Consensus 693 PlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 693 PLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 46778898765 8999999999999999999999998
No 146
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.87 E-value=2.3e-20 Score=198.77 Aligned_cols=288 Identities=14% Similarity=0.134 Sum_probs=210.6
Q ss_pred CeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEE
Q 001184 780 IGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSL 858 (1130)
Q Consensus 780 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~i 858 (1130)
..|+.+.++|.|.++|.....+.+ +..++. .+..|...|..+.+-|....|++++ |.++++
T Consensus 65 HiLavadE~G~i~l~dt~~~~fr~---------------ee~~lk---~~~aH~nAifDl~wapge~~lVsasGDsT~r~ 126 (720)
T KOG0321|consen 65 HILAVADEDGGIILFDTKSIVFRL---------------EERQLK---KPLAHKNAIFDLKWAPGESLLVSASGDSTIRP 126 (720)
T ss_pred ceEEEecCCCceeeecchhhhcch---------------hhhhhc---ccccccceeEeeccCCCceeEEEccCCceeee
Confidence 456666779999999865533221 111111 1226899999999999666777776 889999
Q ss_pred EECCCceeEEE--EeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCe---------------------------E
Q 001184 859 FNMMNFKVMTT--FMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDE---------------------------V 909 (1130)
Q Consensus 859 wd~~~~~~~~~--~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~---------------------------~ 909 (1130)
||+++.++... +.+|.+.+.++||.|.+...+++|+.||.|.|||+.-.. .
T Consensus 127 Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr 206 (720)
T KOG0321|consen 127 WDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKR 206 (720)
T ss_pred eeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcc
Confidence 99999999877 889999999999999999999999999999999986321 1
Q ss_pred EEEEecCCCCeeE---EEEccCCCeEEEEeC-CCcEEEEECCCCccccee-e---EeccCC-CCCCCeEEEEEcCCCcEE
Q 001184 910 KTKLKGHQKHITG---LAFSTNLNILVSSGS-DAQLIFWNTDTWEKRKSI-A---IQLPAG-KLPVGETRVQFHSDQVRL 980 (1130)
Q Consensus 910 ~~~l~~h~~~V~~---l~~s~dg~~L~s~s~-Dg~i~vwd~~~~~~~~~~-~---~~~~~~-~~~~~v~~~~~s~d~~~l 980 (1130)
+.....|...|.+ +.+..|...||++|. |+.|+|||+......... . ...+.+ .....+.++.....|.+|
T Consensus 207 ~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L 286 (720)
T KOG0321|consen 207 IRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYL 286 (720)
T ss_pred ccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeE
Confidence 1123356666666 667778999999998 999999999875432111 1 111111 112567888888888988
Q ss_pred EE-EcCCcEEEEECCCce--eeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCC
Q 001184 981 LV-NHETQLAIYDGSKME--CIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQAS 1057 (1130)
Q Consensus 981 ~~-~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 1057 (1130)
.+ +.|+.|+.|++.+.. .+..+.++...... ..-..|||+.+|++|+.|...++|.+.+-+.-..+.
T Consensus 287 ~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~-vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l--------- 356 (720)
T KOG0321|consen 287 FASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFY-VKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL--------- 356 (720)
T ss_pred EEEecCCcEEEEeccccCcCchhhccCcccceee-eeeecCCCCceEeccCCCcceeeeeecCccCChhhh---------
Confidence 87 689999999998543 23333333211112 233569999999999999999999998876543332
Q ss_pred CCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCc
Q 001184 1058 PNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETE 1096 (1130)
Q Consensus 1058 ~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~~~~ 1096 (1130)
-+|.+.++.++|.|.+-.-++++++|.++++|++..+.
T Consensus 357 -~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 357 -LGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred -hCcceEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence 35778888999999877789999999999999997543
No 147
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=4e-20 Score=195.22 Aligned_cols=325 Identities=10% Similarity=0.157 Sum_probs=232.4
Q ss_pred eeeeecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcE
Q 001184 401 QAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLI 480 (1130)
Q Consensus 401 ~~~~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v 480 (1130)
...+++||++.|.|+...|.|.+||+|+.||+|+||.+.+|.|++.. . -.+.|.+|+|+|.+...+|+.+-.+ .+
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~-~---~d~~I~~vaw~P~~~~~vLAvA~~~-~~ 466 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTV-Q---FDSEIRSVAWNPLSDLCVLAVAVGE-CV 466 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEE-e---ecceeEEEEecCCCCceeEEEEecC-ce
Confidence 34478999999999999999999999999999999999999998743 2 3447999999999886455555444 47
Q ss_pred EEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEE----ecCCcEEEEEccCCc----ceeeecCCCccEEEEEEec
Q 001184 481 RVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFST----AVDGKIKAWLYDNVG----SRVDYDAPGLWCTTMLYSA 551 (1130)
Q Consensus 481 ~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~----s~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~s~ 551 (1130)
.|-+ .-|..+..-.. . ..|+++ ..++.+..|.-.... .+.....+...|..+.|+.
T Consensus 467 ~ivnp~~G~~~e~~~t--~-------------ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr 531 (733)
T KOG0650|consen 467 LIVNPIFGDRLEVGPT--K-------------ELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR 531 (733)
T ss_pred EEeCccccchhhhcch--h-------------hhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec
Confidence 7777 55533221110 0 111111 234567778544211 1234455777899999999
Q ss_pred CCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCC
Q 001184 552 DGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGG 631 (1130)
Q Consensus 552 ~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 631 (1130)
.|.||++...+ ++...|.|+++.......-|.... +.+.++.|+|...++++++. ..|+|||+...+.++.+...
T Consensus 532 kGDYlatV~~~-~~~~~VliHQLSK~~sQ~PF~ksk-G~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg-- 606 (733)
T KOG0650|consen 532 KGDYLATVMPD-SGNKSVLIHQLSKRKSQSPFRKSK-GLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTG-- 606 (733)
T ss_pred CCceEEEeccC-CCcceEEEEecccccccCchhhcC-CceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcC--
Confidence 99999998742 346789999987766655554433 37889999999999888876 78999999987777665433
Q ss_pred CCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCC
Q 001184 632 LPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSP 711 (1130)
Q Consensus 632 ~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~ 711 (1130)
...|..++.+|.|..|+.|+.|+.+..+|+.-.....+.+..
T Consensus 607 ~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~-------------------------------------- 648 (733)
T KOG0650|consen 607 SKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRL-------------------------------------- 648 (733)
T ss_pred CeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhh--------------------------------------
Confidence 337899999999999999999999999998776555554433
Q ss_pred CCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeE
Q 001184 712 ARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQ 791 (1130)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i 791 (1130)
|...+++++|++.=..+++++.||++
T Consensus 649 ------------------------------------------------------H~~avr~Va~H~ryPLfas~sdDgtv 674 (733)
T KOG0650|consen 649 ------------------------------------------------------HEKAVRSVAFHKRYPLFASGSDDGTV 674 (733)
T ss_pred ------------------------------------------------------hhhhhhhhhhccccceeeeecCCCcE
Confidence 55666777777777778888888888
Q ss_pred EeeecCCCCCCCCcccccccccccc-cCC-CCcceeccCCCCCCCc----eeEEEEecCCCEEEEEe-CCeEEEE
Q 001184 792 KLWKWNRTEQNPSGKATAAVAPQHW-QPS-NGLLMTNDVPENAEDV----VPCVALSKNDSYVMSAG-GGKVSLF 859 (1130)
Q Consensus 792 ~iw~~~~~~~~~~~~~~~~~~~~~w-~~~-~~~~~~~~~~~~~~~~----i~~l~~s~dg~~la~~~-dg~i~iw 859 (1130)
.|+--. ++ |+. +..++-.....+|... |..+.|.|..-+|.+++ ||+|++|
T Consensus 675 ~Vfhg~-----------------VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 675 IVFHGM-----------------VYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred EEEeee-----------------eehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 876311 11 111 1112222222345444 88899999999999888 8999998
No 148
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.86 E-value=2.4e-20 Score=198.65 Aligned_cols=288 Identities=18% Similarity=0.251 Sum_probs=209.9
Q ss_pred EEEe--cCCCeEEEEEeCcCeEEEEeCCCCcee-ecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeC
Q 001184 353 MDFH--PFHHTLLVVGCGDGEITLWDVGLRERL-VSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFT 429 (1130)
Q Consensus 353 v~fs--pdg~~llasg~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~ 429 (1130)
+.|+ |+.+++||.+..||.|.++|...-... ....| .....|..+|..+.|-|-...|++++.
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~l--------------k~~~aH~nAifDl~wapge~~lVsasG 120 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQL--------------KKPLAHKNAIFDLKWAPGESLLVSASG 120 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhh--------------cccccccceeEeeccCCCceeEEEccC
Confidence 4444 445578999999999999998754332 11112 235689999999999996678999999
Q ss_pred CCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe--cCCC-------------------
Q 001184 430 KHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGR------------------- 488 (1130)
Q Consensus 430 d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd--~~~~------------------- 488 (1130)
|.++++||++++++.... .+.||.+.|.+++|.|++.. .+++|+.||.|.||| .++.
T Consensus 121 DsT~r~Wdvk~s~l~G~~-~~~GH~~SvkS~cf~~~n~~-vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~pt 198 (720)
T KOG0321|consen 121 DSTIRPWDVKTSRLVGGR-LNLGHTGSVKSECFMPTNPA-VFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPT 198 (720)
T ss_pred Cceeeeeeeccceeecce-eecccccccchhhhccCCCc-ceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCC
Confidence 999999999998876543 47899999999999999887 899999999999999 3220
Q ss_pred -------eeeEecCCCcCEEE----EeecccCCccEEEEEec-CCcEEEEEccCCcceee--------ecCC---CccEE
Q 001184 489 -------KLFQFEGHEAPVYS----VCPHQKENIHFIFSTAV-DGKIKAWLYDNVGSRVD--------YDAP---GLWCT 545 (1130)
Q Consensus 489 -------~~~~~~~h~~~v~~----~~~~~~~~~~~l~s~s~-dg~i~vwd~~~~~~~~~--------~~~~---~~~v~ 545 (1130)
.+.....|...|.+ +.| .|...|++++. |+.|+|||++....... +..+ ...+.
T Consensus 199 pskp~~kr~~k~kA~s~ti~ssvTvv~f---kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~ 275 (720)
T KOG0321|consen 199 PSKPLKKRIRKWKAASNTIFSSVTVVLF---KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQV 275 (720)
T ss_pred CCchhhccccccccccCceeeeeEEEEE---eccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeE
Confidence 01111233334433 433 45578888887 99999999987654432 1222 23577
Q ss_pred EEEEecCCCeEEEeeecCCCCcEEEEeeCCCCc--eeEEEecccCceeE-EEEEcCCCCEEEEEeCCCcEEEEeCCCCce
Q 001184 546 TMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA--LKRTYIGFRKKSAG-VVQFDTTRNRILAAGEDNQIKFWDMDNVNM 622 (1130)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 622 (1130)
++.....|.+|++.+. |+.|+.|++.+.. ++..+.++....+. .-..+|++.++++|+.|...++|.+.+-+.
T Consensus 276 nL~lDssGt~L~AsCt----D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~ 351 (720)
T KOG0321|consen 276 NLILDSSGTYLFASCT----DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEA 351 (720)
T ss_pred EEEecCCCCeEEEEec----CCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccC
Confidence 8888888888877765 9999999987633 34555554433332 245789999999999999999999987654
Q ss_pred e-EEEeccCCCCCcceEEEcCC-CCEEEEEeCCCcEEEEEcCCCc
Q 001184 623 L-TSTEAEGGLPSLPRLRFNKE-GNLLVVTTADQGIKILANADGL 665 (1130)
Q Consensus 623 ~-~~~~~~~~~~~i~~v~~s~~-~~~l~~~~~dg~i~iw~~~~~~ 665 (1130)
- ..+. ++...|++++|.|. -.-++++++|..++||++.++.
T Consensus 352 ~~~~l~--Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 352 PPALLL--GHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred Chhhhh--CcceEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence 3 2333 33447899999873 2346777999999999997763
No 149
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=2.5e-21 Score=210.74 Aligned_cols=247 Identities=14% Similarity=0.259 Sum_probs=194.8
Q ss_pred CEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcC-CCCEEEEE
Q 001184 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP-DGNFIGVA 427 (1130)
Q Consensus 349 ~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~las~ 427 (1130)
.+..|+|+.....+||+++..|.|.+||+... ++.+ +...+..|+..|+++.|++ ...+|++|
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~--~rnk--------------~l~~f~EH~Rs~~~ldfh~tep~iliSG 152 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKS--IRNK--------------LLTVFNEHERSANKLDFHSTEPNILISG 152 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCcc--ccch--------------hhhHhhhhccceeeeeeccCCccEEEec
Confidence 55667888655568999999999999999762 1110 1125789999999999998 56789999
Q ss_pred eCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe--cCCCeeeEecCCCcCEEEEee
Q 001184 428 FTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQFEGHEAPVYSVCP 505 (1130)
Q Consensus 428 ~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd--~~~~~~~~~~~h~~~v~~~~~ 505 (1130)
+.||+|++||++..+... ++.+....|.+++|+|.... .++++.+.|.+++|| ...++...+..|.++|.++.|
T Consensus 153 SQDg~vK~~DlR~~~S~~---t~~~nSESiRDV~fsp~~~~-~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nw 228 (839)
T KOG0269|consen 153 SQDGTVKCWDLRSKKSKS---TFRSNSESIRDVKFSPGYGN-KFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNW 228 (839)
T ss_pred CCCceEEEEeeecccccc---cccccchhhhceeeccCCCc-eEEEecCCceEEEeeccCchhHHHHhhcccCceEEEee
Confidence 999999999999876444 56678889999999997655 899999999999999 556778889999999999999
Q ss_pred cccCCccEEEEEecCCcEEEEEccCCcceeeecC-CCccEEEEEEecCCCeE-EEeeecCCCCcEEEEeeCCCCce-eEE
Q 001184 506 HQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA-PGLWCTTMLYSADGSRL-FSCGTSKEGDSHLVEWNESEGAL-KRT 582 (1130)
Q Consensus 506 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l-~~~~~~~~~~~~i~~wd~~~~~~-~~~ 582 (1130)
+| ++.+|+|||.|++|+|||+........... ...++..+.|-|+..+. ++++. -.+..|++||++..-+ ..+
T Consensus 229 hP--nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsm--v~dtsV~VWDvrRPYIP~~t 304 (839)
T KOG0269|consen 229 HP--NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSM--VVDTSVHVWDVRRPYIPYAT 304 (839)
T ss_pred cC--CCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhc--cccceEEEEeecccccccee
Confidence 87 668999999999999999986555443333 34589999999988764 44443 3478999999987544 456
Q ss_pred EecccCceeEEEEEcC-CCCEEEEEeCCCcEEEEeCCCC
Q 001184 583 YIGFRKKSAGVVQFDT-TRNRILAAGEDNQIKFWDMDNV 620 (1130)
Q Consensus 583 ~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~ 620 (1130)
+..|.+ .++.++|.. |...+.+++.||.|..-..+++
T Consensus 305 ~~eH~~-~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 305 FLEHTD-SVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred eeccCc-cccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 777665 788888865 3457888999998876655544
No 150
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.85 E-value=1.3e-19 Score=183.39 Aligned_cols=302 Identities=18% Similarity=0.232 Sum_probs=215.4
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 425 (1130)
...+|..+.|.+++...+|||+.|..|+||-++.+..-... . ...-...+..|..+|+++.|+|+|..||
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~-~---------~V~y~s~Ls~H~~aVN~vRf~p~gelLA 81 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD-M---------KVEYLSSLSRHTRAVNVVRFSPDGELLA 81 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc-e---------eEEEeecccCCcceeEEEEEcCCcCeee
Confidence 46799999999998756999999999999999876543210 0 0112236889999999999999999999
Q ss_pred EEeCCCeEEEEEec--------C-----CccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeee
Q 001184 426 VAFTKHLIHLYTYQ--------G-----SNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLF 491 (1130)
Q Consensus 426 s~~~d~~i~vwd~~--------~-----~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~ 491 (1130)
+|+++|.|.+|... + .+.....+.+.+|...|..++|+||+. ++++++.|+.+++|| ..|..+.
T Consensus 82 Sg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--~l~s~s~dns~~l~Dv~~G~l~~ 159 (434)
T KOG1009|consen 82 SGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--FLVSGSVDNSVRLWDVHAGQLLA 159 (434)
T ss_pred ecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc--eeeeeeccceEEEEEeccceeEe
Confidence 99999999999876 2 111233456789999999999999999 899999999999999 9999999
Q ss_pred EecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeec-------------------CCC----ccEEEEE
Q 001184 492 QFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD-------------------APG----LWCTTML 548 (1130)
Q Consensus 492 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-------------------~~~----~~v~~~~ 548 (1130)
.+.+|...|..++|.|.. +++++-+.|...+.+.+...+...... .|. .-...++
T Consensus 160 ~~~dh~~yvqgvawDpl~--qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRls 237 (434)
T KOG1009|consen 160 ILDDHEHYVQGVAWDPLN--QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLS 237 (434)
T ss_pred eccccccccceeecchhh--hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcc
Confidence 999999999999996644 788888888866666554322221110 011 1245678
Q ss_pred EecCCCeEEEeeecCC----C-CcEEEEeeCCC-CceeEEEecccCceeEEEEEcC------------------CCCEEE
Q 001184 549 YSADGSRLFSCGTSKE----G-DSHLVEWNESE-GALKRTYIGFRKKSAGVVQFDT------------------TRNRIL 604 (1130)
Q Consensus 549 ~s~~~~~l~~~~~~~~----~-~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~------------------~~~~l~ 604 (1130)
|+|+|.++++...--. . -+..++++-.. .++...+.+... ....+.|+| -+-.++
T Consensus 238 fTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k-~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfa 316 (434)
T KOG1009|consen 238 FTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKK-PALAVRFSPVYYELRPLSSEKFLFVLPYRLVFA 316 (434)
T ss_pred cCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCc-ceEEEEeeeeEEEeccccccccccccccceEEE
Confidence 9999999887542100 0 23345555332 222333333222 222333322 222344
Q ss_pred EEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 605 AAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 605 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
.++ ...|+|||.++-.++.....- |-..|+.++|++||..|++.+.||...+..++..
T Consensus 317 iAt-~~svyvydtq~~~P~~~v~ni-hy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 317 IAT-KNSVYVYDTQTLEPLAVVDNI-HYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred Eee-cceEEEeccccccceEEEeee-eeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence 444 568999999998877765432 3348999999999999999999999888777655
No 151
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=3.3e-19 Score=173.61 Aligned_cols=264 Identities=13% Similarity=0.234 Sum_probs=195.7
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcC--CCC
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP--DGN 422 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--dg~ 422 (1130)
+|.+-|.|+.|.+-|++ +|+|+.|++|+|||...+.-. |.. ....+.|.+.|..+.|-+ -|+
T Consensus 11 ~h~DlihdVs~D~~GRR-mAtCSsDq~vkI~d~~~~s~~-------W~~--------Ts~Wrah~~Si~rV~WAhPEfGq 74 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRR-MATCSSDQTVKIWDSTSDSGT-------WSC--------TSSWRAHDGSIWRVVWAHPEFGQ 74 (361)
T ss_pred CCcceeeeeeecccCce-eeeccCCCcEEEEeccCCCCc-------eEE--------eeeEEecCCcEEEEEecCccccc
Confidence 58999999999999997 899999999999997543321 111 124678999999999976 599
Q ss_pred EEEEEeCCCeEEEEEecC------CccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCe------
Q 001184 423 FIGVAFTKHLIHLYTYQG------SNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRK------ 489 (1130)
Q Consensus 423 ~las~~~d~~i~vwd~~~------~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~------ 489 (1130)
.+|+++.|+++.||.-.. +..-....++......|+++.|.|-...+.+++++.||.+|||+ .+-.-
T Consensus 75 vvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~L 154 (361)
T KOG2445|consen 75 VVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTL 154 (361)
T ss_pred eEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchh
Confidence 999999999999998631 11222334566778899999999988888999999999999999 43221
Q ss_pred eeEec-------CCCcCEEEEeecccCC-ccEEEEEecC-----CcEEEEEccCCcc----eeeecCCCccEEEEEEecC
Q 001184 490 LFQFE-------GHEAPVYSVCPHQKEN-IHFIFSTAVD-----GKIKAWLYDNVGS----RVDYDAPGLWCTTMLYSAD 552 (1130)
Q Consensus 490 ~~~~~-------~h~~~v~~~~~~~~~~-~~~l~s~s~d-----g~i~vwd~~~~~~----~~~~~~~~~~v~~~~~s~~ 552 (1130)
...+. .+..+..|+.|+++.- ..+|+.|+.+ +.++||....... ..++..++.+|+.++|.|+
T Consensus 155 q~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn 234 (361)
T KOG2445|consen 155 QHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPN 234 (361)
T ss_pred hhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccc
Confidence 22222 4677788888886543 2466666655 4889998766552 2367788999999999995
Q ss_pred C----CeEEEeeecCCCCcEEEEeeCCCC--------------------ceeEEEecccCceeEEEEEcCCCCEEEEEeC
Q 001184 553 G----SRLFSCGTSKEGDSHLVEWNESEG--------------------ALKRTYIGFRKKSAGVVQFDTTRNRILAAGE 608 (1130)
Q Consensus 553 ~----~~l~~~~~~~~~~~~i~~wd~~~~--------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 608 (1130)
- ..||+++. || |+||.++.. +.+..+.+|.. .+..+.|+-.|..|.+.|.
T Consensus 235 ~Gr~y~~lAvA~k----Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~-~VWrv~wNmtGtiLsStGd 308 (361)
T KOG2445|consen 235 IGRSYHLLAVATK----DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNG-EVWRVRWNMTGTILSSTGD 308 (361)
T ss_pred cCCceeeEEEeec----Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCC-ceEEEEEeeeeeEEeecCC
Confidence 3 35677664 77 999998731 12344556554 8999999999999999999
Q ss_pred CCcEEEEeCCCC---ceeEEEeccC
Q 001184 609 DNQIKFWDMDNV---NMLTSTEAEG 630 (1130)
Q Consensus 609 dg~i~vwd~~~~---~~~~~~~~~~ 630 (1130)
||.||+|...-. ++...+...+
T Consensus 309 DG~VRLWkany~n~~kC~sv~~~e~ 333 (361)
T KOG2445|consen 309 DGCVRLWKANYNNLWKCTSVLKAEG 333 (361)
T ss_pred CceeeehhhhhhhhheeeeEEeccC
Confidence 999999986532 3444444443
No 152
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=2.8e-19 Score=174.11 Aligned_cols=255 Identities=11% Similarity=0.176 Sum_probs=192.6
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCc-cceeeeeeecCCCCeeEEEEecC--CCceEEEEEcCCCcE
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSN-DLCQSLEIDAHVGGVNDLAFSYP--NKQLCIVTCGDDKLI 480 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~-~~~~~~~~~~h~~~V~~i~~s~d--~~~l~l~s~s~d~~v 480 (1130)
+-.+|..-|.++.|.+-|+++|+|+.|++|+|||..... ........+.|.+.|..+.|.+- |+ .+++++.|+++
T Consensus 8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGq--vvA~cS~Drtv 85 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQ--VVATCSYDRTV 85 (361)
T ss_pred cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccc--eEEEEecCCce
Confidence 355899999999999999999999999999999964432 24445567899999999999864 45 89999999999
Q ss_pred EEEec-C------C---CeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCccee------eec------
Q 001184 481 RVWDL-S------G---RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV------DYD------ 538 (1130)
Q Consensus 481 ~iwd~-~------~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~------~~~------ 538 (1130)
.||.. . | ....++......|+.++|.|..-|-.+++++.||.+|||+.-...... ++.
T Consensus 86 ~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp 165 (361)
T KOG2445|consen 86 SIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPP 165 (361)
T ss_pred eeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCc
Confidence 99983 1 1 123456678889999999999989999999999999999865433222 111
Q ss_pred -CCCccEEEEEEecC---CCeEEEeeec-CCCCcEEEEeeCCCCc----eeEEEecccCceeEEEEEcCCC----CEEEE
Q 001184 539 -APGLWCTTMLYSAD---GSRLFSCGTS-KEGDSHLVEWNESEGA----LKRTYIGFRKKSAGVVQFDTTR----NRILA 605 (1130)
Q Consensus 539 -~~~~~v~~~~~s~~---~~~l~~~~~~-~~~~~~i~~wd~~~~~----~~~~~~~~~~~~v~~~~~~~~~----~~l~~ 605 (1130)
.+..+..|+.|+|. ..+|++++.+ ....+.++||....+. .+..+.+|.+ +|+.++|.|.- ..|++
T Consensus 166 ~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~d-pI~di~wAPn~Gr~y~~lAv 244 (361)
T KOG2445|consen 166 GKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTD-PIRDISWAPNIGRSYHLLAV 244 (361)
T ss_pred ccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCC-cceeeeeccccCCceeeEEE
Confidence 23446788999874 4567777632 1123477777654332 3456677666 89999999975 37889
Q ss_pred EeCCCcEEEEeCCCCc-----------------eeEEE-eccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcC
Q 001184 606 AGEDNQIKFWDMDNVN-----------------MLTST-EAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANA 662 (1130)
Q Consensus 606 ~~~dg~i~vwd~~~~~-----------------~~~~~-~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~ 662 (1130)
++.|| |+||++.... .+..+ ....|.+.|..+.|+-.|..|++.+.||.||+|...
T Consensus 245 A~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 245 ATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred eecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 99999 9999987311 12222 234566689999999999999999999999999753
No 153
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=1.3e-19 Score=185.47 Aligned_cols=253 Identities=13% Similarity=0.161 Sum_probs=193.4
Q ss_pred EEEEEEcC-------CCCEEEEEeCCCeEEEEEecCCccceeee------------------eeecCCCCeeEEEEecCC
Q 001184 412 VSRVAWSP-------DGNFIGVAFTKHLIHLYTYQGSNDLCQSL------------------EIDAHVGGVNDLAFSYPN 466 (1130)
Q Consensus 412 V~~v~~sp-------dg~~las~~~d~~i~vwd~~~~~~~~~~~------------------~~~~h~~~V~~i~~s~d~ 466 (1130)
-.|++|-. -|+|+|.|+.|..|.|||+.--..+.+.. ...+|+..|.+++|+..-
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~ 255 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF 255 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence 35666642 36799999999999999985322221111 234799999999999988
Q ss_pred CceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEE
Q 001184 467 KQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCT 545 (1130)
Q Consensus 467 ~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~ 545 (1130)
+. +|+|||.|.+|++|| .+|++..++..|.+.|.++.|++.. ..+|++|+.|++|.+.|.+........-.-.+.|.
T Consensus 256 ~n-VLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~-p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VE 333 (463)
T KOG0270|consen 256 RN-VLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYE-PSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVE 333 (463)
T ss_pred ce-eEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCC-ceEEEeccccceEEeeeccCccccCceEEeccceE
Confidence 77 899999999999999 9999999999999999999999854 47999999999999999985333222112234588
Q ss_pred EEEEecCCCeEEEeeecCCCCcEEEEeeCCCC-ceeEEEecccCceeEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCcee
Q 001184 546 TMLYSADGSRLFSCGTSKEGDSHLVEWNESEG-ALKRTYIGFRKKSAGVVQFDTTR-NRILAAGEDNQIKFWDMDNVNML 623 (1130)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~ 623 (1130)
.++|.|.....+.++. .+|.|+-+|++.. +++.++..|.+ .|.++++++.- .++++++.|+.|++|++.....-
T Consensus 334 kv~w~~~se~~f~~~t---ddG~v~~~D~R~~~~~vwt~~AHd~-~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~ 409 (463)
T KOG0270|consen 334 KVAWDPHSENSFFVST---DDGTVYYFDIRNPGKPVWTLKAHDD-EISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK 409 (463)
T ss_pred EEEecCCCceeEEEec---CCceEEeeecCCCCCceeEEEeccC-CcceEEecCCCCcceeeccccceEEEEeecCCCCc
Confidence 9999998877766664 3899999999875 89999999877 89999998765 47888999999999998765443
Q ss_pred EEEeccCCCCCcceEEEcCCC-CEEEEEeCCCcEEEEEcCCCchhhhh
Q 001184 624 TSTEAEGGLPSLPRLRFNKEG-NLLVVTTADQGIKILANADGLRALRA 670 (1130)
Q Consensus 624 ~~~~~~~~~~~i~~v~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~ 670 (1130)
.........+...|.++.|+- -.++.|+..+.+++||+.+.....+.
T Consensus 410 ~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ka 457 (463)
T KOG0270|consen 410 SVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVRKA 457 (463)
T ss_pred ccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHHHh
Confidence 222222222345677777753 46788888889999999887544443
No 154
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=4.4e-21 Score=206.99 Aligned_cols=233 Identities=11% Similarity=0.198 Sum_probs=207.9
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 425 (1130)
|...|.|+..-..++ ++++|+.|..+.+|.+..-..+. .+.+|+..|.|+.|+++..+|+
T Consensus 27 hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~-------------------S~~~hespIeSl~f~~~E~Lla 86 (825)
T KOG0267|consen 27 HSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAIT-------------------SLTGHESPIESLTFDTSERLLA 86 (825)
T ss_pred hhhhhceeeeeccce-eeccCCCceeeccccccCCchhh-------------------eeeccCCcceeeecCcchhhhc
Confidence 788888888866666 79999999999999986544332 3789999999999999999999
Q ss_pred EEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEe
Q 001184 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVC 504 (1130)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~ 504 (1130)
.|+.+|+|++||++.++.++ ++.||...+.++.|+|-+. +.++|+.|+.+++|| ....|.+.+.+|...|..+.
T Consensus 87 agsasgtiK~wDleeAk~vr---tLtgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~ 161 (825)
T KOG0267|consen 87 AGSASGTIKVWDLEEAKIVR---TLTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLR 161 (825)
T ss_pred ccccCCceeeeehhhhhhhh---hhhccccCcceeeeccceE--EeccccccccceehhhhccCceeeecCCcceeEEEe
Confidence 99999999999999988776 7899999999999999999 789999999999999 77889999999999999999
Q ss_pred ecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEe
Q 001184 505 PHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYI 584 (1130)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 584 (1130)
|. ++|.++++++.|.++++||...++....|..|...+.++.|.|..-+++.|+. ++.+.+||+++.+.+....
T Consensus 162 ls--P~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~----d~tv~f~dletfe~I~s~~ 235 (825)
T KOG0267|consen 162 LS--PDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSS----DRTVRFWDLETFEVISSGK 235 (825)
T ss_pred ec--CCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCC----CceeeeeccceeEEeeccC
Confidence 95 56689999999999999999999999999999999999999999988999886 9999999999988887777
Q ss_pred cccCceeEEEEEcCCCCEEEEEeCCC
Q 001184 585 GFRKKSAGVVQFDTTRNRILAAGEDN 610 (1130)
Q Consensus 585 ~~~~~~v~~~~~~~~~~~l~~~~~dg 610 (1130)
.... .|.+..|+|++..+++|....
T Consensus 236 ~~~~-~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 236 PETD-GVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred CccC-CceeeeecCCceeeecCchhh
Confidence 6544 799999999999888886543
No 155
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=1.1e-19 Score=198.22 Aligned_cols=297 Identities=13% Similarity=0.156 Sum_probs=222.8
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcC-CCCEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP-DGNFI 424 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l 424 (1130)
-+....++...++-..+ +.++. ....||.++...... .+.+.. ...+ .-.-.+..|.|+. +.++|
T Consensus 38 ~k~~~nAIs~nr~~~qi-v~AGr-s~lklyai~~~~~~~--~~~~~~-----k~kq-----n~~~S~~DVkW~~~~~NlI 103 (839)
T KOG0269|consen 38 LKAKANAISVNRDINQI-VVAGR-SLLKLYAINPNDFSE--KCNHRF-----KTKQ-----NKFYSAADVKWGQLYSNLI 103 (839)
T ss_pred cccccceEeecCCccee-EEecc-cceeeEeeCcccCCc--ceeeec-----cccc-----ceeeehhhcccccchhhhh
Confidence 34566777778887764 44443 367777775433211 111100 0000 0112345678875 57899
Q ss_pred EEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEE
Q 001184 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSV 503 (1130)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~ 503 (1130)
|+++..|.|.+||+.....-+....+..|...|.++.|++-..+ +|++||.||+|++|| ...+-..++.+....|..+
T Consensus 104 AT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~-iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV 182 (839)
T KOG0269|consen 104 ATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPN-ILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDV 182 (839)
T ss_pred eeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCcc-EEEecCCCceEEEEeeecccccccccccchhhhce
Confidence 99999999999999763222333367899999999999998877 899999999999999 7777888888999999999
Q ss_pred eecccCCccEEEEEecCCcEEEEEccCCc-ceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEE
Q 001184 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVG-SRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRT 582 (1130)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1130)
.|+|.. +..++++.+.|.+++||++... ....+..|.++|.++.|+|++.+||+||. |++|+|||..+++....
T Consensus 183 ~fsp~~-~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGR----DK~vkiWd~t~~~~~~~ 257 (839)
T KOG0269|consen 183 KFSPGY-GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGR----DKMVKIWDMTDSRAKPK 257 (839)
T ss_pred eeccCC-CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCC----CccEEEEeccCCCccce
Confidence 999865 5799999999999999998754 45578899999999999999999999997 99999999987766555
Q ss_pred EecccCceeEEEEEcCCCCE-EEEEe--CCCcEEEEeCCCCc-eeEEEeccCCCCCcceEEEcC-CCCEEEEEeCCCcEE
Q 001184 583 YIGFRKKSAGVVQFDTTRNR-ILAAG--EDNQIKFWDMDNVN-MLTSTEAEGGLPSLPRLRFNK-EGNLLVVTTADQGIK 657 (1130)
Q Consensus 583 ~~~~~~~~v~~~~~~~~~~~-l~~~~--~dg~i~vwd~~~~~-~~~~~~~~~~~~~i~~v~~s~-~~~~l~~~~~dg~i~ 657 (1130)
..-+...++.++.|-|+..+ |++++ .|-.|+|||++-.- +..++..|.. .++.++|.. |...+.+++.||++.
T Consensus 258 ~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~--~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 258 HTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTD--SVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred eEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCc--cccceeccCCCceeeEeecCccHHH
Confidence 55556668999999998864 55544 57889999997543 4445555443 688899976 566788899999887
Q ss_pred EEEcCCC
Q 001184 658 ILANADG 664 (1130)
Q Consensus 658 iw~~~~~ 664 (1130)
.-.+++.
T Consensus 336 qh~~kna 342 (839)
T KOG0269|consen 336 QHLFKNA 342 (839)
T ss_pred Hhhhhcc
Confidence 6555554
No 156
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.82 E-value=1.2e-18 Score=171.33 Aligned_cols=289 Identities=17% Similarity=0.244 Sum_probs=210.0
Q ss_pred cCCCCEEEEEEec----CCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCC
Q 001184 345 HQGSSVVSMDFHP----FHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD 420 (1130)
Q Consensus 345 ~h~~~V~~v~fsp----dg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 420 (1130)
.|+.+|..++|.+ +...++|+.+. ..+.||......-+.. +|...-..|......++|+-|
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~--------------lq~y~D~d~~Esfytcsw~yd 100 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRL--------------LQSYADEDHDESFYTCSWSYD 100 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceee--------------eeeccCCCCCcceEEEEEEec
Confidence 4889999999985 22235666554 4889998865432220 111122357888899999875
Q ss_pred C----CEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEec-
Q 001184 421 G----NFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFE- 494 (1130)
Q Consensus 421 g----~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~- 494 (1130)
. -+||.|+.-|.|+|.|+.++++.. .+.+|...|+.+.|.|+..+ +++++|.|.+||+|| .+..++..|-
T Consensus 101 ~~~~~p~la~~G~~GvIrVid~~~~~~~~---~~~ghG~sINeik~~p~~~q-lvls~SkD~svRlwnI~~~~Cv~VfGG 176 (385)
T KOG1034|consen 101 SNTGNPFLAAGGYLGVIRVIDVVSGQCSK---NYRGHGGSINEIKFHPDRPQ-LVLSASKDHSVRLWNIQTDVCVAVFGG 176 (385)
T ss_pred CCCCCeeEEeecceeEEEEEecchhhhcc---ceeccCccchhhhcCCCCCc-EEEEecCCceEEEEeccCCeEEEEecc
Confidence 3 389999999999999999988665 67899999999999999877 799999999999999 8888988764
Q ss_pred --CCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCccee----------------------------eecCCCccE
Q 001184 495 --GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV----------------------------DYDAPGLWC 544 (1130)
Q Consensus 495 --~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~----------------------------~~~~~~~~v 544 (1130)
||.+.|.++.|+. ++.+|++++.|.++++|++...+-.. +...|...|
T Consensus 177 ~egHrdeVLSvD~~~--~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyV 254 (385)
T KOG1034|consen 177 VEGHRDEVLSVDFSL--DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYV 254 (385)
T ss_pred cccccCcEEEEEEcC--CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchH
Confidence 7999999999965 45699999999999999988422111 011122233
Q ss_pred EEEEEecCCCeEEEeeecCCCCcEEEEeeC-CCCce-------------eEEEecccCceeE--EEEEcCCCCEEEEEeC
Q 001184 545 TTMLYSADGSRLFSCGTSKEGDSHLVEWNE-SEGAL-------------KRTYIGFRKKSAG--VVQFDTTRNRILAAGE 608 (1130)
Q Consensus 545 ~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~-~~~~~-------------~~~~~~~~~~~v~--~~~~~~~~~~l~~~~~ 608 (1130)
.|+.|- |+++++-+. ++.|..|.. +-++. +..+.-... .+. ..+|.|-++.|+.|..
T Consensus 255 DCvrw~--gd~ilSksc----enaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c-~iWfirf~~d~~~~~la~gnq 327 (385)
T KOG1034|consen 255 DCVRWF--GDFILSKSC----ENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMC-DIWFIRFAFDPWQKMLALGNQ 327 (385)
T ss_pred HHHHHH--hhheeeccc----CceEEEEecchhhhhhhccCCCccceeeeeEeccCcc-ceEEEEEeecHHHHHHhhccC
Confidence 333333 466776654 779999987 21211 111211111 222 2456677889999999
Q ss_pred CCcEEEEeCCCCcee--EEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001184 609 DNQIKFWDMDNVNML--TSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1130)
Q Consensus 609 dg~i~vwd~~~~~~~--~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~ 661 (1130)
.|.|++||+++.++. .++........|...+|+.||..|+..++|++|.-||.
T Consensus 328 ~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 328 SGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred CCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 999999999987653 33444444557899999999999999999999999985
No 157
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.82 E-value=3.8e-18 Score=167.80 Aligned_cols=300 Identities=13% Similarity=0.203 Sum_probs=204.0
Q ss_pred CCCccceEEEEEec----cCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEE
Q 001184 764 TDSASKVARLLYTN----SGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCV 839 (1130)
Q Consensus 764 ~~~~~~i~~l~~s~----~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l 839 (1130)
..|...|..++|.+ +...+++......+.+|....... -.++.......+......+
T Consensus 35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~-------------------ir~lq~y~D~d~~Esfytc 95 (385)
T KOG1034|consen 35 EDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGG-------------------IRLLQSYADEDHDESFYTC 95 (385)
T ss_pred ccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccc-------------------eeeeeeccCCCCCcceEEE
Confidence 34778888888874 334455555566778886543210 0111111222366666777
Q ss_pred EEecC----CCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEE-
Q 001184 840 ALSKN----DSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKL- 913 (1130)
Q Consensus 840 ~~s~d----g~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l- 913 (1130)
+|+-| .-++|+++ -|.|+|.|+.++++...+.+|...|+.+.+.|+..++|++++.|.+|++|++++..++..+
T Consensus 96 sw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfG 175 (385)
T KOG1034|consen 96 SWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFG 175 (385)
T ss_pred EEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEec
Confidence 77543 33666666 7999999999999999999999999999999988899999999999999999999999886
Q ss_pred --ecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEe-----------ccC--C---------CCCCCeE
Q 001184 914 --KGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQ-----------LPA--G---------KLPVGET 969 (1130)
Q Consensus 914 --~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~-----------~~~--~---------~~~~~v~ 969 (1130)
.+|.+.|.++.|+++|.+++|+|.|.+|++|++...+........ .+. . -+...|.
T Consensus 176 G~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVD 255 (385)
T KOG1034|consen 176 GVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVD 255 (385)
T ss_pred ccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHH
Confidence 579999999999999999999999999999999853321111000 000 0 0112222
Q ss_pred EEEEcCCCcEEEE-EcCCcEEEEEC-CCceeeeeeecC----------CCCCCCeEEEEEC--CCCCEEEEEeCCCcEEE
Q 001184 970 RVQFHSDQVRLLV-NHETQLAIYDG-SKMECIRQWVPQ----------DVLSSPISSAAYS--CNSQLIYATFTDGSIGV 1035 (1130)
Q Consensus 970 ~~~~s~d~~~l~~-~~d~~i~v~d~-~~~~~~~~~~~~----------~~~~~~v~~v~~s--~dg~~l~t~~~Dg~i~v 1035 (1130)
++.|- |.++++ +-++.|..|.. +-++.+....+. ......|+-+.|+ |-+++||.|...|.|++
T Consensus 256 Cvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~v 333 (385)
T KOG1034|consen 256 CVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYV 333 (385)
T ss_pred HHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEE
Confidence 33332 456666 67889999987 222221111111 1113456666554 55889999999999999
Q ss_pred EeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeC
Q 001184 1036 FDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEP 1092 (1130)
Q Consensus 1036 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~ 1092 (1130)
||++..+....-.... +.....+-..+|+. |+.+|+...+|++|.=||.
T Consensus 334 wdL~~~ep~~~ttl~~-------s~~~~tVRQ~sfS~-dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 334 WDLDNNEPPKCTTLTH-------SKSGSTVRQTSFSR-DGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred EECCCCCCccCceEEe-------ccccceeeeeeecc-cCcEEEEEeCCCcEEEEEe
Confidence 9999887642221111 11223344456665 6889999999999988875
No 158
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.82 E-value=1.6e-18 Score=178.03 Aligned_cols=207 Identities=15% Similarity=0.229 Sum_probs=166.1
Q ss_pred eeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecC-----CCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcE
Q 001184 449 EIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLS-----GRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKI 523 (1130)
Q Consensus 449 ~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~-----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i 523 (1130)
...-+.++|++++|+|....-++++|+.-|.|-+||.. ...+..+..|.++|.++.|+|... ..+++.|.||+|
T Consensus 181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~-s~i~ssSyDGti 259 (498)
T KOG4328|consen 181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANT-SQIYSSSYDGTI 259 (498)
T ss_pred eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCCh-hheeeeccCcee
Confidence 45678899999999998774489999999999999952 224677889999999999998655 678899999999
Q ss_pred EEEEccCCcceeeecC--CCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCce-eEEEecccCceeEEEEEcCCC
Q 001184 524 KAWLYDNVGSRVDYDA--PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGAL-KRTYIGFRKKSAGVVQFDTTR 600 (1130)
Q Consensus 524 ~vwd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~ 600 (1130)
++-|++.......+.. ....+.++.|+.+...++.+.. -|.+.+||.+++.. ...+.-|.. .|..++++|..
T Consensus 260 R~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~----~G~f~~iD~R~~~s~~~~~~lh~k-KI~sv~~NP~~ 334 (498)
T KOG4328|consen 260 RLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDN----VGNFNVIDLRTDGSEYENLRLHKK-KITSVALNPVC 334 (498)
T ss_pred eeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeec----ccceEEEEeecCCccchhhhhhhc-ccceeecCCCC
Confidence 9999987665544444 5557888999998888888864 66899999988765 444455544 89999999987
Q ss_pred C-EEEEEeCCCcEEEEeCCCCceeE--EEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001184 601 N-RILAAGEDNQIKFWDMDNVNMLT--STEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1130)
Q Consensus 601 ~-~l~~~~~dg~i~vwd~~~~~~~~--~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~ 661 (1130)
. ++++++.|++.+|||++...... .+..-.|...|.++.|||.+..|++.+.|..|+|||.
T Consensus 335 p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~ds 398 (498)
T KOG4328|consen 335 PWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDS 398 (498)
T ss_pred chheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeec
Confidence 5 78889999999999998644332 2333345558999999998888999999999999996
No 159
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=8.1e-20 Score=208.76 Aligned_cols=251 Identities=16% Similarity=0.247 Sum_probs=203.0
Q ss_pred CccEEEEEEcCCCCE----EEEEeCCCeEEEEEecC---CccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEE
Q 001184 409 SISVSRVAWSPDGNF----IGVAFTKHLIHLYTYQG---SNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIR 481 (1130)
Q Consensus 409 ~~~V~~v~~spdg~~----las~~~d~~i~vwd~~~---~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~ 481 (1130)
....+.++|.+.|.. ||.|..||.|.+||... +.......+...|.+.|..+.|++.... +|++|+.||.|.
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~n-lLASGa~~geI~ 142 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGN-LLASGADDGEIL 142 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCc-eeeccCCCCcEE
Confidence 456789999998776 89999999999999865 4444444567889999999999998876 799999999999
Q ss_pred EEe-cCCCeeeEec--CCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCc--cEEEEEEecCCCeE
Q 001184 482 VWD-LSGRKLFQFE--GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGL--WCTTMLYSADGSRL 556 (1130)
Q Consensus 482 iwd-~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l 556 (1130)
||| .+-+.-..+. .....|.+++|+.. ...+|++++.+|++.|||++..+.+..+..+.. .+..++|+|++..-
T Consensus 143 iWDlnn~~tP~~~~~~~~~~eI~~lsWNrk-vqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTq 221 (1049)
T KOG0307|consen 143 IWDLNKPETPFTPGSQAPPSEIKCLSWNRK-VSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQ 221 (1049)
T ss_pred EeccCCcCCCCCCCCCCCcccceEeccchh-hhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCcee
Confidence 999 4333333331 24578999999753 447899999999999999999988887766554 57899999987654
Q ss_pred EEeeecCCCCcEEEEeeCCCC-ceeEEEecccCceeEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCC
Q 001184 557 FSCGTSKEGDSHLVEWNESEG-ALKRTYIGFRKKSAGVVQFDTTR-NRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPS 634 (1130)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 634 (1130)
+....+.+....|.+||++.. ..++.+.+|.. .+.++.|++.+ .++++++.|+.|.+|+.++++.+..+...+. .
T Consensus 222 l~~As~dd~~PviqlWDlR~assP~k~~~~H~~-GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~n--W 298 (1049)
T KOG0307|consen 222 LLVASGDDSAPVIQLWDLRFASSPLKILEGHQR-GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGN--W 298 (1049)
T ss_pred eeeecCCCCCceeEeecccccCCchhhhccccc-ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCc--c
Confidence 433335667889999998764 45677777666 78899999877 7899999999999999999999999887544 7
Q ss_pred cceEEEcCCCC-EEEEEeCCCcEEEEEcCCC
Q 001184 635 LPRLRFNKEGN-LLVVTTADQGIKILANADG 664 (1130)
Q Consensus 635 i~~v~~s~~~~-~l~~~~~dg~i~iw~~~~~ 664 (1130)
+..+.|.|... .++.++-||.|.|+.+...
T Consensus 299 ~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 299 CFDVQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred eeeeeecCCCcchhhhheeccceeeeeeecC
Confidence 89999999554 8899999999999998765
No 160
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.82 E-value=3.6e-16 Score=183.26 Aligned_cols=371 Identities=23% Similarity=0.408 Sum_probs=279.6
Q ss_pred ecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCc-cceeeeeeecCC-CCeeEEEE-ecCCCceEEEEEcCCCcEE
Q 001184 405 VKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSN-DLCQSLEIDAHV-GGVNDLAF-SYPNKQLCIVTCGDDKLIR 481 (1130)
Q Consensus 405 ~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~-~~~~~~~~~~h~-~~V~~i~~-s~d~~~l~l~s~s~d~~v~ 481 (1130)
...|...+.++.+.+++..++.++.|+.+.+|+...+. .+. .+.++. ..+..+.+ ++++....+..+..|+.+.
T Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 137 (466)
T COG2319 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIK---SLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVK 137 (466)
T ss_pred eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEE---EEeccCCCceeeEEEECCCcceEEeccCCCCccEE
Confidence 55888999999999999999999999999999998875 232 444533 36777777 7777632333345599999
Q ss_pred EEecC--CCeeeEecCCCcCEEEEeecccCCccEEEEEec-CCcEEEEEccCCcceeeecCCCccEEEEEEecCCC-eEE
Q 001184 482 VWDLS--GRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAV-DGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGS-RLF 557 (1130)
Q Consensus 482 iwd~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~ 557 (1130)
+||.. ......+..|...|..++|++.. ..+++++. |+.+++|+.........+..|...+.+++|+|++. .++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 215 (466)
T COG2319 138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDG--KLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIA 215 (466)
T ss_pred EEEecCCCeEEEEEecCcccEEEEEECCCC--CEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEE
Confidence 99944 58888999999999999997655 57788875 99999999998777778888889999999999998 444
Q ss_pred EeeecCCCCcEEEEeeCCCCceeE-EEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce-eEEEeccCCCCCc
Q 001184 558 SCGTSKEGDSHLVEWNESEGALKR-TYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNM-LTSTEAEGGLPSL 635 (1130)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~i 635 (1130)
+++. ++.|.+||...+.... .+.+|.. .. ...|++++.++++++.|+.+++|+...... +..+ ..+...+
T Consensus 216 ~~~~----d~~i~~wd~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~v 287 (466)
T COG2319 216 SGSS----DGTIRLWDLSTGKLLRSTLSGHSD-SV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL--SGHSSSV 287 (466)
T ss_pred EecC----CCcEEEEECCCCcEEeeecCCCCc-ce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE--ecCCccE
Confidence 4343 8899999988888877 6777665 33 338999998999999999999999987665 4444 2334589
Q ss_pred ceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCc
Q 001184 636 PRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPS 715 (1130)
Q Consensus 636 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~ 715 (1130)
.++.|+|++..+++++.|+.+.+|+......... .
T Consensus 288 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~-------------------------------------------- 322 (466)
T COG2319 288 LSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSS-L-------------------------------------------- 322 (466)
T ss_pred EEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEE-e--------------------------------------------
Confidence 9999999888888898898899997654410000 0
Q ss_pred ccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeee
Q 001184 716 TILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWK 795 (1130)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~ 795 (1130)
.
T Consensus 323 ----------------------------------------------------------~--------------------- 323 (466)
T COG2319 323 ----------------------------------------------------------T--------------------- 323 (466)
T ss_pred ----------------------------------------------------------e---------------------
Confidence 0
Q ss_pred cCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEE-e-CCeEEEEECCCceeEEEEeCC
Q 001184 796 WNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSA-G-GGKVSLFNMMNFKVMTTFMSP 873 (1130)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~-~-dg~i~iwd~~~~~~~~~~~~~ 873 (1130)
...|...+..+.+.+++..++.+ . |+.+.+|+.............
T Consensus 324 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 370 (466)
T COG2319 324 ---------------------------------LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH 370 (466)
T ss_pred ---------------------------------ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCC
Confidence 00123345555552222444444 3 677888888777633333222
Q ss_pred CCCeEEEEEeCCCCcEEEE-EeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCC
Q 001184 874 PPASTFLAFHPQDNNIIAI-GMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDT 948 (1130)
Q Consensus 874 ~~~i~~l~~sp~~~~~las-g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~ 948 (1130)
..+..+.+.+ + ..++. +..++.+.+|+............+...+....+++++..+++++.++.+++|+...
T Consensus 371 -~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 371 -SNVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred -ceEEEEEECC-C-CCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 2288899998 7 55554 78999999999999888777766547899999999999999999999999999987
No 161
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.82 E-value=1.6e-18 Score=178.94 Aligned_cols=216 Identities=17% Similarity=0.271 Sum_probs=172.8
Q ss_pred EEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecC
Q 001184 838 CVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGH 916 (1130)
Q Consensus 838 ~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h 916 (1130)
|++......++++|+ .+.|+|||++...+.+.+++|...|+++.+.. ...+||+++..|.|.|..+.++.....|...
T Consensus 84 Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~ 162 (673)
T KOG4378|consen 84 CVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKTKQKTTTFTID 162 (673)
T ss_pred HHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC-CcceeEEeccCCcEEEEecccCccccceecC
Confidence 333333447888887 78999999998888899999999999999998 7789999999999999999999888888755
Q ss_pred CCC-eeEEEEccCCC-eEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEE--EcCCcEEEEE
Q 001184 917 QKH-ITGLAFSTNLN-ILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV--NHETQLAIYD 992 (1130)
Q Consensus 917 ~~~-V~~l~~s~dg~-~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~--~~d~~i~v~d 992 (1130)
.+. |.-+.|+|..+ +|.+++.+|.|.+||+..... .......|..+...|+|+|....|++ +.|..|.+||
T Consensus 163 sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp-----~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD 237 (673)
T KOG4378|consen 163 SGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP-----IFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYD 237 (673)
T ss_pred CCCeEEEeecccccceeeEeeccCCeEEEEeccCCCc-----ccchhhhccCCcCcceecCCccceEEEecccceEEEee
Confidence 454 45889999876 456789999999999987322 22222334478889999998887776 7899999999
Q ss_pred CCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcC
Q 001184 993 GSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHP 1072 (1130)
Q Consensus 993 ~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1072 (1130)
.........+... .+.+.++|+++|.+|++|...|.|..||++..+.-.... +.|...+++++|-|
T Consensus 238 ~~s~~s~~~l~y~----~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~----------sah~~sVt~vafq~ 303 (673)
T KOG4378|consen 238 IRSQASTDRLTYS----HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVR----------SAHDASVTRVAFQP 303 (673)
T ss_pred cccccccceeeec----CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEe----------eecccceeEEEeee
Confidence 9987777766554 589999999999999999999999999999776544443 34555677788777
Q ss_pred C
Q 001184 1073 Q 1073 (1130)
Q Consensus 1073 ~ 1073 (1130)
.
T Consensus 304 s 304 (673)
T KOG4378|consen 304 S 304 (673)
T ss_pred c
Confidence 4
No 162
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.82 E-value=8.7e-16 Score=179.98 Aligned_cols=289 Identities=27% Similarity=0.422 Sum_probs=219.9
Q ss_pred eccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCc-eeecccceeeeccccccceeeeeecCCC-ccEEEEEE-cC
Q 001184 343 TMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRE-RLVSKPFKIWDMSNCSMMLQAAIVKDSS-ISVSRVAW-SP 419 (1130)
Q Consensus 343 ~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~v~~-sp 419 (1130)
...|...|.++.|.+.+. .++.++.|+.+.+|+...+. ... .+.++. ..+..+.+ ++
T Consensus 61 ~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~ 120 (466)
T COG2319 61 LRGHEDSITSIAFSPDGE-LLLSGSSDGTIKLWDLDNGEKLIK-------------------SLEGLHDSSVSKLALSSP 120 (466)
T ss_pred eeeccceEEEEEECCCCc-EEEEecCCCcEEEEEcCCCceeEE-------------------EEeccCCCceeeEEEECC
Confidence 345899999999999998 57888889999999998876 322 233322 46777777 88
Q ss_pred CCC-EEEEEeC-CCeEEEEEecC-CccceeeeeeecCCCCeeEEEEecCCCceEEEEEcC-CCcEEEEe-cCCCeeeEec
Q 001184 420 DGN-FIGVAFT-KHLIHLYTYQG-SNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD-DKLIRVWD-LSGRKLFQFE 494 (1130)
Q Consensus 420 dg~-~las~~~-d~~i~vwd~~~-~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~-d~~v~iwd-~~~~~~~~~~ 494 (1130)
++. +++..+. |+.+.+||... .... ..+..|...|..++|+|+++ .+++++. |+.+++|+ ..+..+..+.
T Consensus 121 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (466)
T COG2319 121 DGNSILLASSSLDGTVKLWDLSTPGKLI---RTLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRTGKPLSTLA 195 (466)
T ss_pred CcceEEeccCCCCccEEEEEecCCCeEE---EEEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCCCceEEeec
Confidence 888 5555444 99999999987 3322 35788999999999999999 6788875 99999999 6678899999
Q ss_pred CCCcCEEEEeecccCCcc-EEEEEecCCcEEEEEccCCccee-eecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEe
Q 001184 495 GHEAPVYSVCPHQKENIH-FIFSTAVDGKIKAWLYDNVGSRV-DYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEW 572 (1130)
Q Consensus 495 ~h~~~v~~~~~~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w 572 (1130)
+|...|.+++|.+ ++. .+++++.|+.|++||........ .+..+.... ...|++++.++++++. ++.+++|
T Consensus 196 ~~~~~v~~~~~~~--~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----d~~~~~~ 268 (466)
T COG2319 196 GHTDPVSSLAFSP--DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSS----DGTIRLW 268 (466)
T ss_pred cCCCceEEEEEcC--CcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecC----CCcEEEe
Confidence 9999999999984 444 55566999999999888655555 466666654 3389999988886665 8999999
Q ss_pred eCCCCce-eEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEE-
Q 001184 573 NESEGAL-KRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVT- 650 (1130)
Q Consensus 573 d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~- 650 (1130)
+...... ...+.+| ...+.++.|.|++..+++++.|+.+.+|+..+...........+...+..+.+.+++..++.+
T Consensus 269 ~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (466)
T COG2319 269 DLRSSSSLLRTLSGH-SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGG 347 (466)
T ss_pred eecCCCcEEEEEecC-CccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEee
Confidence 9987665 4444444 448888999998888888988999999999888776666522222257888883332455555
Q ss_pred eCCCcEEEEEcCCC
Q 001184 651 TADQGIKILANADG 664 (1130)
Q Consensus 651 ~~dg~i~iw~~~~~ 664 (1130)
..|+.+.+|+....
T Consensus 348 ~~d~~~~~~~~~~~ 361 (466)
T COG2319 348 SDDGTIRLWDLRTG 361 (466)
T ss_pred cCCCcEEeeecCCC
Confidence 57778888876543
No 163
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.82 E-value=3.6e-18 Score=167.52 Aligned_cols=407 Identities=12% Similarity=0.153 Sum_probs=250.4
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeE
Q 001184 414 RVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQ 492 (1130)
Q Consensus 414 ~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~ 492 (1130)
-++|||+|+++|+++.- .+.|-|..+-+..+ +...-+.|..+.|..|.-+ .+.....|+.|.+|+ ..-+--..
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~q----lf~cldki~yieW~ads~~-ilC~~yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQ----LFLCLDKIVYIEWKADSCH-ILCVAYKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHH----HHHHHHHhhheeeecccee-eeeeeeccceEEEEEeecceeEEE
Confidence 47899999999999765 68888887754332 1122456889999998876 677888999999999 66677778
Q ss_pred ecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEe
Q 001184 493 FEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEW 572 (1130)
Q Consensus 493 ~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w 572 (1130)
+..-..++.+++|+|++. .+|.+...|-+|.+|.+.+..... +......+..++|.|||++.+.++. .|-...+.+.
T Consensus 87 Ideg~agls~~~WSPdgr-hiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sR-rDCkdyv~i~ 163 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSPDGR-HILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSR-RDCKDYVQIS 163 (447)
T ss_pred eccCCCcceeeeECCCcc-eEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeec-ccHHHHHHHH
Confidence 888888999999976543 677788889999999998755443 3334455789999999999998874 2222223333
Q ss_pred eCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeC--CCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEE
Q 001184 573 NESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGE--DNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVT 650 (1130)
Q Consensus 573 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~ 650 (1130)
..+.-.+++.+.-... ..+.+.|+|||+.+++-.. +-.|+.|... -.+..++|+|.+++|++|
T Consensus 164 ~c~~W~ll~~f~~dT~-DltgieWsPdg~~laVwd~~Leykv~aYe~~--------------lG~k~v~wsP~~qflavG 228 (447)
T KOG4497|consen 164 SCKAWILLKEFKLDTI-DLTGIEWSPDGNWLAVWDNVLEYKVYAYERG--------------LGLKFVEWSPCNQFLAVG 228 (447)
T ss_pred hhHHHHHHHhcCCCcc-cccCceECCCCcEEEEecchhhheeeeeeec--------------cceeEEEeccccceEEee
Confidence 3333344555554333 5667899999987775322 2223322211 147889999999999999
Q ss_pred eCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCC
Q 001184 651 TADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEK 730 (1130)
Q Consensus 651 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (1130)
+.|+.+|+.+--+- ..+..+- |...+...... .+--..+++.
T Consensus 229 syD~~lrvlnh~tW-k~f~efl-hl~s~~dp~~~-----~~~ke~~~~~------------------------------- 270 (447)
T KOG4497|consen 229 SYDQMLRVLNHFTW-KPFGEFL-HLCSYHDPTLH-----LLEKETFSIV------------------------------- 270 (447)
T ss_pred ccchhhhhhceeee-eehhhhc-cchhccCchhh-----hhhhhhcchh-------------------------------
Confidence 99999998764332 1111110 00000000000 0000000000
Q ss_pred cccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccc
Q 001184 731 PRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAA 810 (1130)
Q Consensus 731 ~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 810 (1130)
+.. |. ++.|.|..-- +..+... -.+|....-
T Consensus 271 -----------------------ql~---------~~----cLsf~p~~~~-a~~~~~s-e~~YE~~~~----------- 301 (447)
T KOG4497|consen 271 -----------------------QLL---------HH----CLSFTPTDLE-AHIWEES-ETIYEQQMT----------- 301 (447)
T ss_pred -----------------------hhc---------cc----ccccCCCccc-cCccccc-hhhhhhhhc-----------
Confidence 000 00 0011111000 0000000 000000000
Q ss_pred cccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEeC---CeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCC
Q 001184 811 VAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGG---GKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDN 887 (1130)
Q Consensus 811 ~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~ 887 (1130)
.+ ....-+.. .+.+ ...-.+.-++||+|..++++-.| +.+.+||++..+....+. ...+|.+..|.| +.
T Consensus 302 -pv---~~~~lkp~-tD~p-nPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP-~~ 373 (447)
T KOG4497|consen 302 -PV---KVHKLKPP-TDFP-NPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDP-GR 373 (447)
T ss_pred -ce---eeecccCC-CCCC-CcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCC-CC
Confidence 00 00000000 0111 24566788999999999999875 669999999877665554 456799999999 66
Q ss_pred cEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCc
Q 001184 888 NIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQ 940 (1130)
Q Consensus 888 ~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~ 940 (1130)
..|+.......+++|......++.. .+..-.|..+.|.-+|..++-.+.|..
T Consensus 374 prL~vctg~srLY~W~psg~~~V~v-P~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 374 PRLVVCTGKSRLYFWAPSGPRVVGV-PKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred ceEEEEcCCceEEEEcCCCceEEec-CCCCceeeeEEecCCCcEEEEEcCCce
Confidence 6677777777799999876555544 333467999999999999999999864
No 164
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.82 E-value=1.1e-18 Score=174.45 Aligned_cols=250 Identities=18% Similarity=0.252 Sum_probs=187.3
Q ss_pred CCCCceeEEEEecCCCEEEEEe---CCeEEEEECCC----------------ceeEEEEeCCCCCeEEEEEeCCCCcEEE
Q 001184 831 NAEDVVPCVALSKNDSYVMSAG---GGKVSLFNMMN----------------FKVMTTFMSPPPASTFLAFHPQDNNIIA 891 (1130)
Q Consensus 831 ~~~~~i~~l~~s~dg~~la~~~---dg~i~iwd~~~----------------~~~~~~~~~~~~~i~~l~~sp~~~~~la 891 (1130)
.|.+.+..+..++-++-.++++ .|.|+||++.. .+.+.++.+|...=..|+|||.-.-.|+
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 4677777777777665444443 59999999852 3567778889988999999995444577
Q ss_pred EEeCCCcEEEEEeecCeEE---EEEecCCCCeeEEEEccCC-CeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCC
Q 001184 892 IGMEDSTIQIYNVRVDEVK---TKLKGHQKHITGLAFSTNL-NILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVG 967 (1130)
Q Consensus 892 sg~~dg~v~iwd~~~~~~~---~~l~~h~~~V~~l~~s~dg-~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 967 (1130)
+|.--+.|++|...++.-. ..+.+|+..|-.|+|||.. ..++|||.||+|+|||+..+.+...... ..+...
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~----kAh~sD 304 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST----KAHNSD 304 (440)
T ss_pred cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe----eccCCc
Confidence 8888899999999887432 3467899999999999974 5889999999999999999754333322 223368
Q ss_pred eEEEEEcCCCcEEEEE-cCCcEEEEECCC---ceeeeeeecCCCCCCCeEEEEECCC-CCEEEEEeCCCcEEEEeCCCcc
Q 001184 968 ETRVQFHSDQVRLLVN-HETQLAIYDGSK---MECIRQWVPQDVLSSPISSAAYSCN-SQLIYATFTDGSIGVFDADSLR 1042 (1130)
Q Consensus 968 v~~~~~s~d~~~l~~~-~d~~i~v~d~~~---~~~~~~~~~~~~~~~~v~~v~~s~d-g~~l~t~~~Dg~i~vwd~~~~~ 1042 (1130)
|..|.|+..-.+|+++ +||+++|||+++ ++.+..+..| ..+|+++.|+|. ...|++++.|..|.+||+..-.
T Consensus 305 VNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~H---k~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~ 381 (440)
T KOG0302|consen 305 VNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYH---KAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEA 381 (440)
T ss_pred eeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEec---cCCeeEEEeccccCceEEeccCCCcEEEEEeeccC
Confidence 9999999999888884 689999999985 5567777666 899999999984 5588888899999999987432
Q ss_pred c-----------ccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeC
Q 001184 1043 L-----------RCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEP 1092 (1130)
Q Consensus 1043 ~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~ 1092 (1130)
- +..+.+.... -|......-.+.|+++-+.+|++.+.|| +.||..
T Consensus 382 D~ee~~~~a~~~L~dlPpQLLF----VHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfkt 437 (440)
T KOG0302|consen 382 DEEEIDQEAAEGLQDLPPQLLF----VHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFKT 437 (440)
T ss_pred ChhhhccccccchhcCCceeEE----EecchhHhhhheeccCCCCeEEEecccc-eeEEEe
Confidence 2 1111111110 1222233446889999999999999999 667754
No 165
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.81 E-value=3.7e-18 Score=167.28 Aligned_cols=287 Identities=15% Similarity=0.217 Sum_probs=207.8
Q ss_pred EEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEc-------CCCC
Q 001184 350 VVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWS-------PDGN 422 (1130)
Q Consensus 350 V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-------pdg~ 422 (1130)
...+.|||||.. |.+-+.|..+++|++-..-.-....-.. ..+++..+--.....|...+|- |+..
T Consensus 52 ~kgckWSPDGSc-iL~~sedn~l~~~nlP~dlys~~~~~~~------~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~ 124 (406)
T KOG2919|consen 52 LKGCKWSPDGSC-ILSLSEDNCLNCWNLPFDLYSKKADGPL------NFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTN 124 (406)
T ss_pred hccceeCCCCce-EEeecccCeeeEEecChhhcccCCCCcc------ccccceeEEeccCCEEEEEEeeeccccCCCccc
Confidence 346899999995 6777889999999985322111000000 0001111111234567777775 6778
Q ss_pred EEEEEeCCCeEEEEEecCCccceeeeeeecCCC---CeeEEEEecCCCceEEEEEcCCCcEEEEe--cCCCee--eEe--
Q 001184 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVG---GVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKL--FQF-- 493 (1130)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~---~V~~i~~s~d~~~l~l~s~s~d~~v~iwd--~~~~~~--~~~-- 493 (1130)
++|+.+.+.-|++||.-+|+... ......|.. +..+++|+|||. .|+ ++..+.|+++| ..|+.- ...
T Consensus 125 l~a~ssr~~PIh~wdaftG~lra-Sy~~ydh~de~taAhsL~Fs~DGe--qlf-aGykrcirvFdt~RpGr~c~vy~t~~ 200 (406)
T KOG2919|consen 125 LFAVSSRDQPIHLWDAFTGKLRA-SYRAYDHQDEYTAAHSLQFSPDGE--QLF-AGYKRCIRVFDTSRPGRDCPVYTTVT 200 (406)
T ss_pred eeeeccccCceeeeecccccccc-chhhhhhHHhhhhheeEEecCCCC--eEe-ecccceEEEeeccCCCCCCcchhhhh
Confidence 99999999999999999987433 223334544 346899999999 444 45678999999 444422 111
Q ss_pred ---cCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEE
Q 001184 494 ---EGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLV 570 (1130)
Q Consensus 494 ---~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1130)
.+..+.|.+++|+|.. ...++.++.-.++-++.-........+.+|.+.|+.+.|.++|+.|++++. .+..|.
T Consensus 201 ~~k~gq~giisc~a~sP~~-~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaR---k~dkIl 276 (406)
T KOG2919|consen 201 KGKFGQKGIISCFAFSPMD-SKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGAR---KDDKIL 276 (406)
T ss_pred cccccccceeeeeeccCCC-CcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeeccccc---CCCeEE
Confidence 2346788899998854 468999999999999999999999999999999999999999999999975 477899
Q ss_pred EeeCCC-CceeEEEecccCceeEEE--EEcCCCCEEEEEeCCCcEEEEeCCC-CceeEEEeccCCCCCcceEEEcCCCCE
Q 001184 571 EWNESE-GALKRTYIGFRKKSAGVV--QFDTTRNRILAAGEDNQIKFWDMDN-VNMLTSTEAEGGLPSLPRLRFNKEGNL 646 (1130)
Q Consensus 571 ~wd~~~-~~~~~~~~~~~~~~v~~~--~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~i~~v~~s~~~~~ 646 (1130)
.||++. +.++..+..|....-..+ ...|++++|++|+.||.|++||++. +..+..+..+.. .++.++++|--.+
T Consensus 277 ~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd--~vNgvslnP~mpi 354 (406)
T KOG2919|consen 277 CWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSD--TVNGVSLNPIMPI 354 (406)
T ss_pred EEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccc--cccceecCcccce
Confidence 999976 455566666654333333 4568899999999999999999998 776666655544 7899999999888
Q ss_pred EEEEeCC
Q 001184 647 LVVTTAD 653 (1130)
Q Consensus 647 l~~~~~d 653 (1130)
+|+++..
T Consensus 355 latssGq 361 (406)
T KOG2919|consen 355 LATSSGQ 361 (406)
T ss_pred eeeccCc
Confidence 8877654
No 166
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.81 E-value=3e-18 Score=176.87 Aligned_cols=271 Identities=11% Similarity=0.144 Sum_probs=201.6
Q ss_pred CeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCC-EEEEEeCCCeEEEEEecCCcc-ceee
Q 001184 370 GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN-FIGVAFTKHLIHLYTYQGSND-LCQS 447 (1130)
Q Consensus 370 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~las~~~d~~i~vwd~~~~~~-~~~~ 447 (1130)
..++|||+...+..... .-......+.++.|+.... .+|+.+.|..+++|.-..... +...
T Consensus 12 d~~kl~D~s~~~~~~~~-----------------~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~ 74 (673)
T KOG4378|consen 12 DKTKLSDFSDLETKSEY-----------------VHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRV 74 (673)
T ss_pred CceEEeecccccCcccc-----------------ccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCcccee
Confidence 37999999876544310 0011123499999998764 334456788899997654311 1111
Q ss_pred eeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEE
Q 001184 448 LEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAW 526 (1130)
Q Consensus 448 ~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vw 526 (1130)
....+. .-.|++...... ++++|+..+.|+||| ....+.+.+++|...|+++.++..+ .+|++++..|.|.+.
T Consensus 75 ~k~~gd--~~~Cv~~~s~S~--y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~D--eyiAsvs~gGdiiih 148 (673)
T KOG4378|consen 75 RKLTGD--NAFCVACASQSL--YEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTD--EYIASVSDGGDIIIH 148 (673)
T ss_pred eccccc--hHHHHhhhhcce--eeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCc--ceeEEeccCCcEEEE
Confidence 122222 233333333334 899999999999999 6555667789999999999986544 799999999999999
Q ss_pred EccCCcceeeecCC-CccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCC-EEE
Q 001184 527 LYDNVGSRVDYDAP-GLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRN-RIL 604 (1130)
Q Consensus 527 d~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~ 604 (1130)
.+.++.....+... +..|.-+.|+|..+.+++... .+|.|.+||+....++..+...|..+...+||+|... .|+
T Consensus 149 ~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~as---d~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~v 225 (673)
T KOG4378|consen 149 GTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIAS---DKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLV 225 (673)
T ss_pred ecccCccccceecCCCCeEEEeecccccceeeEeec---cCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEE
Confidence 99988887777766 446779999999888776543 2899999999888887777666666888899999775 677
Q ss_pred EEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhh
Q 001184 605 AAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALR 669 (1130)
Q Consensus 605 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 669 (1130)
+.|.|..|++||....+....+.... +...++|+++|.+|+.|...|.|..||+......+.
T Consensus 226 sVG~Dkki~~yD~~s~~s~~~l~y~~---Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~ 287 (673)
T KOG4378|consen 226 SVGYDKKINIYDIRSQASTDRLTYSH---PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVA 287 (673)
T ss_pred EecccceEEEeecccccccceeeecC---CcceeeecCCceEEEeecCCceEEEEecccCCCCce
Confidence 89999999999999877766665433 689999999999999999999999999976643333
No 167
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.81 E-value=2.9e-18 Score=171.55 Aligned_cols=264 Identities=16% Similarity=0.233 Sum_probs=186.4
Q ss_pred ceeeeccCCCCEEEEEEecCCC-eEEEEEeCcCeEEEEeCCCCceee-cccceeeeccccccceeeeeecCCCccEEEEE
Q 001184 339 AVACTMHQGSSVVSMDFHPFHH-TLLVVGCGDGEITLWDVGLRERLV-SKPFKIWDMSNCSMMLQAAIVKDSSISVSRVA 416 (1130)
Q Consensus 339 ~~~~~~~h~~~V~~v~fspdg~-~llasg~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 416 (1130)
.-.....|.+.+.-+.-++-|+ .+.|+=+..|.|.|||+...-... .-.+.+-+ +...+...+.+|...=+.++
T Consensus 143 ~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~----s~~~Pl~t~~ghk~EGy~Ld 218 (440)
T KOG0302|consen 143 IEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKD----SEFRPLFTFNGHKGEGYGLD 218 (440)
T ss_pred ccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccc----cccCceEEecccCccceeee
Confidence 3344456888888888888764 355666788999999985321110 00000000 12223346789999999999
Q ss_pred EcCC-CCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCC---Ceee
Q 001184 417 WSPD-GNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSG---RKLF 491 (1130)
Q Consensus 417 ~spd-g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~---~~~~ 491 (1130)
|||- --.|++|..-+.|++|...+|.=..-...+.+|+..|.+++|||..+. +|+|||-|++|+||| ..+ .++.
T Consensus 219 WSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~~~~ 297 (440)
T KOG0302|consen 219 WSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKAAVS 297 (440)
T ss_pred cccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccceeE
Confidence 9993 225778877788999999887543333457789999999999998877 899999999999999 555 3344
Q ss_pred EecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCC---cceeeecCCCccEEEEEEecCCCe-EEEeeecCCCCc
Q 001184 492 QFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNV---GSRVDYDAPGLWCTTMLYSADGSR-LFSCGTSKEGDS 567 (1130)
Q Consensus 492 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~~~~~~~ 567 (1130)
+ +.|.+.|+.+.|+... .+|++|+.||+++|||++.. +.+..+..|..+|+++.|+|.... |++++. |.
T Consensus 298 ~-kAh~sDVNVISWnr~~--~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~----D~ 370 (440)
T KOG0302|consen 298 T-KAHNSDVNVISWNRRE--PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGE----DN 370 (440)
T ss_pred e-eccCCceeeEEccCCc--ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccC----CC
Confidence 4 7899999999996543 59999999999999999864 455688899999999999996544 444443 89
Q ss_pred EEEEeeCCCCce----------------eEEEecc-cCceeEEEEEcCCCC-EEEEEeCCCcEEEE
Q 001184 568 HLVEWNESEGAL----------------KRTYIGF-RKKSAGVVQFDTTRN-RILAAGEDNQIKFW 615 (1130)
Q Consensus 568 ~i~~wd~~~~~~----------------~~~~~~~-~~~~v~~~~~~~~~~-~l~~~~~dg~i~vw 615 (1130)
+|.+||+....- .+.+.-| .+..+.-+.|+++-. ++++.+.|| +.||
T Consensus 371 QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 371 QITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred cEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 999999853211 1112222 222466678887654 677777777 4444
No 168
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.80 E-value=8.3e-17 Score=167.95 Aligned_cols=492 Identities=13% Similarity=0.113 Sum_probs=292.5
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEE------ecCCCceEEEEEcCCCcE
Q 001184 407 DSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAF------SYPNKQLCIVTCGDDKLI 480 (1130)
Q Consensus 407 ~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~------s~d~~~l~l~s~s~d~~v 480 (1130)
.|...|.|+.|+.+...+.+++++..+.-||+.+.. .... .+ ....|.-.-+ ...++.-.++.++.||.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s-~~~~-~~--p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf 87 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDS-VEVA-KL--PDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRF 87 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchh-hhhh-hC--CcccCCccccccccccCCCCCcceEEEEcCCceE
Confidence 466678899999988877777655555555554432 2111 11 1111111111 011111168889999999
Q ss_pred EEEecCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEee
Q 001184 481 RVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCG 560 (1130)
Q Consensus 481 ~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 560 (1130)
.|.+..++.-.....|.+.+.+-.|++ +|.-|++++.||.|++|.- ++-...++.....+|+|++|.|+.+.++.|.
T Consensus 88 ~il~k~~rVE~sv~AH~~A~~~gRW~~--dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~ 164 (737)
T KOG1524|consen 88 VILNKSARVERSISAHAAAISSGRWSP--DGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFCQ 164 (737)
T ss_pred EEecccchhhhhhhhhhhhhhhcccCC--CCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEec
Confidence 999999999999999999999999965 5577999999999999974 3334445555667899999999999888875
Q ss_pred ecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEE
Q 001184 561 TSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRF 640 (1130)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~ 640 (1130)
.+.+.+=.+.....+-....|.+ .|.++.|++..+.+++||+|-..+|||.. |+.+..-..+.. +|++++|
T Consensus 165 -----g~h~~IKpL~~n~k~i~WkAHDG-iiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey--~ITSva~ 235 (737)
T KOG1524|consen 165 -----GGHISIKPLAANSKIIRWRAHDG-LVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEY--AITSVAF 235 (737)
T ss_pred -----CCeEEEeecccccceeEEeccCc-EEEEeecCccccceeecCCceeEEeeccc-CcccccCChhcc--ceeeeee
Confidence 56777777766666667777655 89999999999999999999999999975 455554444544 8999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccC
Q 001184 641 NKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNG 720 (1130)
Q Consensus 641 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~ 720 (1130)
.|+ +.++.++.+ ++|+ .
T Consensus 236 npd-~~~~v~S~n-t~R~---~---------------------------------------------------------- 252 (737)
T KOG1524|consen 236 NPE-KDYLLWSYN-TARF---S---------------------------------------------------------- 252 (737)
T ss_pred ccc-cceeeeeee-eeee---c----------------------------------------------------------
Confidence 999 666666543 3331 0
Q ss_pred CCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEee-ecCCC
Q 001184 721 ADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLW-KWNRT 799 (1130)
Q Consensus 721 ~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw-~~~~~ 799 (1130)
....+.|..++|++||.+++++...|.+.+- -++..
T Consensus 253 -------------------------------------------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ieq~ 289 (737)
T KOG1524|consen 253 -------------------------------------------SPRVGSIFNLSWSADGTQATCGTSTGQLIVAYAIEQQ 289 (737)
T ss_pred -------------------------------------------CCCccceEEEEEcCCCceeeccccCceEEEeeeehhh
Confidence 1145678899999999999999998887652 22221
Q ss_pred CCCCCcccc--cccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEeCCeEEEEECCCceeEEEEeCCCCCe
Q 001184 800 EQNPSGKAT--AAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPAS 877 (1130)
Q Consensus 800 ~~~~~~~~~--~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i 877 (1130)
-....++.. ....+.+-|+.++..... .....+... +-.-.+|+++....|++|.-........+.+....+
T Consensus 290 l~~~n~~~t~~~r~~I~vrdV~~~v~d~L----E~p~rv~k~--sL~Y~hLvvaTs~qvyiys~knwntpiiidgre~tr 363 (737)
T KOG1524|consen 290 LVSGNLKATSKSRKSITVRDVATGVQDIL----EFPQRVVKF--SLGYGHLVVATSLQVYIYSEKNWNTPIIIDGREDTR 363 (737)
T ss_pred hhhccceeEeeccceEEeehhhhhHHHHh----hCccceeee--eeceeEEEEEeccEEEEEecCCccCcEEEeccccch
Confidence 111111111 111233444444443221 123334433 345567888888889999877666555555544433
Q ss_pred EEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEE--EecCCCC---eeEEEEccCCCeEEEEe--CCCcEEEEEC-CCC
Q 001184 878 TFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTK--LKGHQKH---ITGLAFSTNLNILVSSG--SDAQLIFWNT-DTW 949 (1130)
Q Consensus 878 ~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~--l~~h~~~---V~~l~~s~dg~~L~s~s--~Dg~i~vwd~-~~~ 949 (1130)
.-+.-+. +++. .....+|.+|..+... ... +++..-+ -..+....| .|+.-. ....+.++|. .++
T Consensus 364 ~lieq~e---k~fl-i~dgsSi~lytyegR~-~~np~~Pg~~~dlL~~rtlsLand--tLaird~ad~kvlhlFd~istg 436 (737)
T KOG1524|consen 364 NLIEQGE---KYFL-ILDGSSIWLYTYEGRL-HLNPRYPGSQIDLLTWRTLSLAND--TLAIRDNADPKVLHLFDLISTG 436 (737)
T ss_pred hHhhhhh---hheE-EecCcEEEEEEecCce-ecCCCCCCcccccccceeeecccc--eEEeecCCCCeeEEeccCCCCC
Confidence 3222222 2222 2233456666654322 111 1111000 012222222 333322 2344677887 444
Q ss_pred cccceeeEeccCCCCCCCeEEEEEc----CCCcEEEE-EcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEE
Q 001184 950 EKRKSIAIQLPAGKLPVGETRVQFH----SDQVRLLV-NHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLI 1024 (1130)
Q Consensus 950 ~~~~~~~~~~~~~~~~~~v~~~~~s----~d~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l 1024 (1130)
+...-. ... .+...+..++.. ++.+.++. ..++.+.|=.++....-..+..- ..-|..++|+. -.-+
T Consensus 437 k~qgDg--k~L--~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgkee~I~Ki---GTmVhtLawnd-ttNi 508 (737)
T KOG1524|consen 437 KRQGDG--KSL--RHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKEEEIYKI---GTMVHTLAWND-TTNI 508 (737)
T ss_pred cccCCc--ccc--chhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCchhhhhhh---hhhhhhhhhcc-ccce
Confidence 322110 000 011223333332 33334443 44555666555543222222222 45678889874 4456
Q ss_pred EEEeCCCcEEEEeCCCc
Q 001184 1025 YATFTDGSIGVFDADSL 1041 (1130)
Q Consensus 1025 ~t~~~Dg~i~vwd~~~~ 1041 (1130)
++|-.|+.+.||-+.+-
T Consensus 509 LcglqDt~fsVWy~pn~ 525 (737)
T KOG1524|consen 509 LCGLQDTCFSVWYYPNE 525 (737)
T ss_pred eeeeccceEEEEEcCCc
Confidence 77888999999987754
No 169
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.80 E-value=2.5e-17 Score=161.47 Aligned_cols=228 Identities=12% Similarity=0.126 Sum_probs=171.2
Q ss_pred ccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEeCCeE
Q 001184 777 NSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKV 856 (1130)
Q Consensus 777 ~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i 856 (1130)
|+..++++.+.+.-|.+||.-+++...... .+|.. ..-....+++|+|||..|.+|....|
T Consensus 121 P~t~l~a~ssr~~PIh~wdaftG~lraSy~--------~ydh~-----------de~taAhsL~Fs~DGeqlfaGykrci 181 (406)
T KOG2919|consen 121 PSTNLFAVSSRDQPIHLWDAFTGKLRASYR--------AYDHQ-----------DEYTAAHSLQFSPDGEQLFAGYKRCI 181 (406)
T ss_pred CccceeeeccccCceeeeeccccccccchh--------hhhhH-----------HhhhhheeEEecCCCCeEeecccceE
Confidence 566777888888889888876654432221 11111 01223468999999999999999999
Q ss_pred EEEEC-CCceeEEE---E----eCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccC
Q 001184 857 SLFNM-MNFKVMTT---F----MSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTN 928 (1130)
Q Consensus 857 ~iwd~-~~~~~~~~---~----~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d 928 (1130)
++||+ +.|+.-.. + .+..+-+.+++|+|.+...+|+|+....+-||.-....++..+-+|.+.|+.+.|.+|
T Consensus 182 rvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~ed 261 (406)
T KOG2919|consen 182 RVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCED 261 (406)
T ss_pred EEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccC
Confidence 99999 44432221 1 1235668999999988889999999999999999999999999999999999999999
Q ss_pred CCeEEEEeC-CCcEEEEECCCCcccceeeEeccCCCCC--CCeEEEEEcCCCcEEEEE-cCCcEEEEECCC-ceeeeeee
Q 001184 929 LNILVSSGS-DAQLIFWNTDTWEKRKSIAIQLPAGKLP--VGETRVQFHSDQVRLLVN-HETQLAIYDGSK-MECIRQWV 1003 (1130)
Q Consensus 929 g~~L~s~s~-Dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~d~~~l~~~-~d~~i~v~d~~~-~~~~~~~~ 1003 (1130)
|+.|++|+. |..|..||+....... -....+.. ..-.-....|++++|+++ .+|.|++||+++ |..+..+.
T Consensus 262 Gn~lfsGaRk~dkIl~WDiR~~~~pv----~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~ 337 (406)
T KOG2919|consen 262 GNKLFSGARKDDKILCWDIRYSRDPV----YALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTG 337 (406)
T ss_pred cCeecccccCCCeEEEEeehhccchh----hhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccc
Confidence 999999987 7789999998743211 11112221 222334456899999996 799999999998 66566665
Q ss_pred cCCCCCCCeEEEEECCCCCEEEEEeCC
Q 001184 1004 PQDVLSSPISSAAYSCNSQLIYATFTD 1030 (1130)
Q Consensus 1004 ~~~~~~~~v~~v~~s~dg~~l~t~~~D 1030 (1130)
.+ +..++.+++.|--.++|+++..
T Consensus 338 ~~---sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 338 NY---SDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred cc---cccccceecCcccceeeeccCc
Confidence 55 7899999999998899988854
No 170
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=3.6e-18 Score=174.95 Aligned_cols=210 Identities=14% Similarity=0.255 Sum_probs=169.4
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcC-CCCE
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP-DGNF 423 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~ 423 (1130)
+|++.|.+++|..+-+.+||+||.|.+|++||+.+|++.. ++..|...|.+++|.| ...+
T Consensus 241 gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~-------------------s~~~~~k~Vq~l~wh~~~p~~ 301 (463)
T KOG0270|consen 241 GHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKS-------------------SITHHGKKVQTLEWHPYEPSV 301 (463)
T ss_pred cchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcce-------------------ehhhcCCceeEEEecCCCceE
Confidence 5999999999999998899999999999999999999876 5778999999999999 5789
Q ss_pred EEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe--cCCCeeeEecCCCcCEE
Q 001184 424 IGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQFEGHEAPVY 501 (1130)
Q Consensus 424 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd--~~~~~~~~~~~h~~~v~ 501 (1130)
|++|+.|++|.+.|++...+.... + .-.+.|-.++|.|.... .++++..||+|+-+| ..|+++.+++.|.++|.
T Consensus 302 LLsGs~D~~V~l~D~R~~~~s~~~--w-k~~g~VEkv~w~~~se~-~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~IS 377 (463)
T KOG0270|consen 302 LLSGSYDGTVALKDCRDPSNSGKE--W-KFDGEVEKVAWDPHSEN-SFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEIS 377 (463)
T ss_pred EEeccccceEEeeeccCccccCce--E-EeccceEEEEecCCCce-eEEEecCCceEEeeecCCCCCceeEEEeccCCcc
Confidence 999999999999999853333322 2 24567999999998886 788889999999999 56799999999999999
Q ss_pred EEeecccCCccEEEEEecCCcEEEEEccCCcceee--ecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCce
Q 001184 502 SVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVD--YDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGAL 579 (1130)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~ 579 (1130)
+++++.... .++++++.|+.|++|++........ ....-+...|+++.|+-..+++.+. ..+.+++||+.+...
T Consensus 378 gl~~n~~~p-~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG---~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 378 GLSVNIQTP-GLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGG---EKAVLRVWDIFTNSP 453 (463)
T ss_pred eEEecCCCC-cceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecC---ccceEEEeecccChh
Confidence 999976443 5899999999999999876554332 1222234677888887766554432 166899999987665
Q ss_pred eE
Q 001184 580 KR 581 (1130)
Q Consensus 580 ~~ 581 (1130)
++
T Consensus 454 V~ 455 (463)
T KOG0270|consen 454 VR 455 (463)
T ss_pred HH
Confidence 43
No 171
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.78 E-value=3.1e-17 Score=165.23 Aligned_cols=233 Identities=14% Similarity=0.243 Sum_probs=183.4
Q ss_pred eecCCCccEEEEEEcC-CCCEEEEEeCCCeEEEEEecCCcc----ceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCC
Q 001184 404 IVKDSSISVSRVAWSP-DGNFIGVAFTKHLIHLYTYQGSND----LCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK 478 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~sp-dg~~las~~~d~~i~vwd~~~~~~----~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~ 478 (1130)
...||.++|..++|+| +...||+||.|.+|.||++..+.. ......+.||...|--++|+|.... .|+|++.|+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~Dn 154 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGSDN 154 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhccCCc
Confidence 5789999999999999 677999999999999999965432 2345678999999999999998877 899999999
Q ss_pred cEEEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCc-cEEEEEEecCCCeE
Q 001184 479 LIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGL-WCTTMLYSADGSRL 556 (1130)
Q Consensus 479 ~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l 556 (1130)
+|.+|| .+|+.+.++. |...|.+++|+ .||.+|++.+.|..|||||.++++....-..|.+ .-..+.|-.+|. +
T Consensus 155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn--~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i 230 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPDMVYSMSFN--RDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-I 230 (472)
T ss_pred eEEEEeccCCceeeecC-CCCeEEEEEec--cCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-e
Confidence 999999 8999998888 99999999995 5668999999999999999999988887655544 556677888998 7
Q ss_pred EEeeecCCCCcEEEEeeCCCCce---eEEEecccCceeEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCce-eEEEeccCC
Q 001184 557 FSCGTSKEGDSHLVEWNESEGAL---KRTYIGFRKKSAGVVQFDTTRNRILAAG-EDNQIKFWDMDNVNM-LTSTEAEGG 631 (1130)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~-~~~~~~~~~ 631 (1130)
++.+.++-.+.++-+||...-.. ...+.. ...|.--.+.++.+.++.+| .|+.||-|.+.+..+ +..+.....
T Consensus 231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt--SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S 308 (472)
T KOG0303|consen 231 FTTGFSRMSERQIALWDPNNLEEPIALQELDT--SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSS 308 (472)
T ss_pred eeeccccccccceeccCcccccCcceeEEecc--CCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEeccccc
Confidence 77777777899999999765332 333332 33466667888888776655 799999999987653 333333222
Q ss_pred CCCcceEEEcCC
Q 001184 632 LPSLPRLRFNKE 643 (1130)
Q Consensus 632 ~~~i~~v~~s~~ 643 (1130)
..+-..+.|-|.
T Consensus 309 ~epQRG~g~mPK 320 (472)
T KOG0303|consen 309 KEPQRGMGFMPK 320 (472)
T ss_pred CCcccccccccc
Confidence 334455666653
No 172
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.78 E-value=2.2e-17 Score=166.25 Aligned_cols=247 Identities=17% Similarity=0.255 Sum_probs=187.7
Q ss_pred cEEEEEEcC-----CCCEEEEE---eCCCeEEEEEe-cCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEE
Q 001184 411 SVSRVAWSP-----DGNFIGVA---FTKHLIHLYTY-QGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIR 481 (1130)
Q Consensus 411 ~V~~v~~sp-----dg~~las~---~~d~~i~vwd~-~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~ 481 (1130)
.|+.++|.. +.++||.. +..|...+--+ ++|+.-.....+.||+++|.+++|+|-+.+ .|+|||+|.+|.
T Consensus 29 rVs~~tWDS~fcavNPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~-vIASgSeD~~v~ 107 (472)
T KOG0303|consen 29 RVSRVTWDSSFCAVNPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDC-VIASGSEDTKVM 107 (472)
T ss_pred eeeeeeccccccccCCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCc-eeecCCCCceEE
Confidence 455566643 45666653 12222222222 344433344456899999999999997776 899999999999
Q ss_pred EEe-cCC-------CeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCC
Q 001184 482 VWD-LSG-------RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADG 553 (1130)
Q Consensus 482 iwd-~~~-------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~ 553 (1130)
||. ..+ +.+..+.||...|.-+.|||... +.|++++.|.+|.+||+.+++....+. |..-|.++.|+.||
T Consensus 108 vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~-NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dG 185 (472)
T KOG0303|consen 108 VWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP-NVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDG 185 (472)
T ss_pred EEECCCcccccCcccceEEEeecceeEEEEeecccch-hhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCC
Confidence 999 333 34678899999999999999765 789999999999999999999999888 88899999999999
Q ss_pred CeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEe----CCCcEEEEeCCCCceeEEEecc
Q 001184 554 SRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAG----EDNQIKFWDMDNVNMLTSTEAE 629 (1130)
Q Consensus 554 ~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~vwd~~~~~~~~~~~~~ 629 (1130)
.++++++. |..|++||.++++.+..-.+|.+..-..+.|-.++. +++.+ .+..+-+||..+.+....+..-
T Consensus 186 s~l~Ttck----DKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~el 260 (472)
T KOG0303|consen 186 SLLCTTCK----DKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQEL 260 (472)
T ss_pred ceeeeecc----cceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-eeeeccccccccceeccCcccccCcceeEEe
Confidence 99999987 899999999999999888888776666677888888 55543 5778999998775433222222
Q ss_pred CCCCCcceEEEcCCCCEEEEE-eCCCcEEEEEcCCCc
Q 001184 630 GGLPSLPRLRFNKEGNLLVVT-TADQGIKILANADGL 665 (1130)
Q Consensus 630 ~~~~~i~~v~~s~~~~~l~~~-~~dg~i~iw~~~~~~ 665 (1130)
.....|.---|.+|.++++.+ -.|+.||-|++.+..
T Consensus 261 DtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 261 DTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred ccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 222356666778888877655 468999999997763
No 173
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=2.3e-18 Score=197.04 Aligned_cols=281 Identities=12% Similarity=0.197 Sum_probs=210.9
Q ss_pred cccCCCCCcccccCCcccc----eeeeccCCCCEEEEEEecCCCe---EEEEEeCcCeEEEEeCCCCceeecccceeeec
Q 001184 321 TYPVPSQQATWSLDDLPRA----VACTMHQGSSVVSMDFHPFHHT---LLVVGCGDGEITLWDVGLRERLVSKPFKIWDM 393 (1130)
Q Consensus 321 ~~s~~~~~~~~~~~~~~~~----~~~~~~h~~~V~~v~fspdg~~---llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~ 393 (1130)
.||....+-+|..+..... ..-.+.-..+-+.++|.+.|.. +||.|..||.|.+||...- +.....
T Consensus 34 sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~--~~~~~~----- 106 (1049)
T KOG0307|consen 34 SFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASI--IANASE----- 106 (1049)
T ss_pred ccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccCCceEEecchhh--ccCcch-----
Confidence 3444555555554443322 3334456678899999998876 6999999999999998752 110000
Q ss_pred cccccceeeeeecCCCccEEEEEEcCCCC-EEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEE
Q 001184 394 SNCSMMLQAAIVKDSSISVSRVAWSPDGN-FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIV 472 (1130)
Q Consensus 394 ~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~ 472 (1130)
. .......|.+.|..+.|++.+. +||+|+.||.|.|||+..-+...... -....+.|.+++|+..-.+ +|+
T Consensus 107 -----~-~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqh-ILA 178 (1049)
T KOG0307|consen 107 -----E-VLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSH-ILA 178 (1049)
T ss_pred -----H-HHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC-CCCCcccceEeccchhhhH-Hhh
Confidence 0 0113668999999999999765 99999999999999998743221110 1224567999999987776 799
Q ss_pred EEcCCCcEEEEe-cCCCeeeEecCCCc--CEEEEeecccCCccEEEEEecCC--cEEEEEccCCcce-eeecCCCccEEE
Q 001184 473 TCGDDKLIRVWD-LSGRKLFQFEGHEA--PVYSVCPHQKENIHFIFSTAVDG--KIKAWLYDNVGSR-VDYDAPGLWCTT 546 (1130)
Q Consensus 473 s~s~d~~v~iwd-~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~s~dg--~i~vwd~~~~~~~-~~~~~~~~~v~~ 546 (1130)
+++.+|.+.||| ...+.+..+..|.+ .+..+.|||+...+++++..+|+ .|.+||++..... ..+..|...|.+
T Consensus 179 S~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~Gils 258 (1049)
T KOG0307|consen 179 SGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILS 258 (1049)
T ss_pred ccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceee
Confidence 999999999999 66667777776655 46789999977655554444444 5999999876544 466789999999
Q ss_pred EEEecCC-CeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCc
Q 001184 547 MLYSADG-SRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRN-RILAAGEDNQIKFWDMDNVN 621 (1130)
Q Consensus 547 ~~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~ 621 (1130)
+.|++.+ +++++++. |++|.+|+.++++.+..+.. .+..+..+.|+|... .+++++.||.|.|+.+.+..
T Consensus 259 lsWc~~D~~lllSsgk----D~~ii~wN~~tgEvl~~~p~-~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 259 LSWCPQDPRLLLSSGK----DNRIICWNPNTGEVLGELPA-QGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eccCCCCchhhhcccC----CCCeeEecCCCceEeeecCC-CCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 9999966 88888886 99999999999999999887 444788899999886 77889999999999987654
No 174
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.77 E-value=1.2e-18 Score=190.67 Aligned_cols=280 Identities=18% Similarity=0.275 Sum_probs=214.7
Q ss_pred eeeccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCC
Q 001184 341 ACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD 420 (1130)
Q Consensus 341 ~~~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 420 (1130)
.+.++|...|+|+.|...|++ +++|+.|..|+||..+++.++. ...||++.|+.++.+.+
T Consensus 184 krLlgH~naVyca~fDrtg~~-Iitgsdd~lvKiwS~et~~~lA-------------------s~rGhs~ditdlavs~~ 243 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDRTGRY-IITGSDDRLVKIWSMETARCLA-------------------SCRGHSGDITDLAVSSN 243 (1113)
T ss_pred HHHHhhhhheeeeeeccccce-EeecCccceeeeeeccchhhhc-------------------cCCCCccccchhccchh
Confidence 345689999999999999985 9999999999999999999886 47899999999999999
Q ss_pred CCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeE----ecC-
Q 001184 421 GNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQ----FEG- 495 (1130)
Q Consensus 421 g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~----~~~- 495 (1130)
..++|+++.|..|++|.+..+..+. .+.||++.|++++|+|- .+.+.||++++||..-..+.. +..
T Consensus 244 n~~iaaaS~D~vIrvWrl~~~~pvs---vLrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~prp~~~~ 314 (1113)
T KOG0644|consen 244 NTMIAAASNDKVIRVWRLPDGAPVS---VLRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYVPRPLKFT 314 (1113)
T ss_pred hhhhhhcccCceEEEEecCCCchHH---HHhccccceeeeccCcc------ccCCCCCceEeccccccccccCCCCCCcc
Confidence 9999999999999999999988665 68999999999999984 478899999999944222111 111
Q ss_pred CCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCC-eEEEeeecCCCCcEEEEeeC
Q 001184 496 HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGS-RLFSCGTSKEGDSHLVEWNE 574 (1130)
Q Consensus 496 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~~~~i~~wd~ 574 (1130)
...-+.++.| ..++.-++|++.|+.-..|.+..... +...+.-+.++.|-. +.+++-. +-.+++|++
T Consensus 315 ~~~~~~s~~~--~~~~~~f~Tgs~d~ea~n~e~~~l~~------~~~~lif~t~ssd~~~~~~~ar~----~~~~~vwnl 382 (1113)
T KOG0644|consen 315 EKDLVDSILF--ENNGDRFLTGSRDGEARNHEFEQLAW------RSNLLIFVTRSSDLSSIVVTARN----DHRLCVWNL 382 (1113)
T ss_pred cccceeeeec--cccccccccccCCcccccchhhHhhh------hccceEEEeccccccccceeeee----eeEeeeeec
Confidence 1233444444 34556788999999888886543211 111122222222322 2233322 678899999
Q ss_pred CCCceeEEEecccCceeEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCC
Q 001184 575 SEGALKRTYIGFRKKSAGVVQFDTTRNRI-LAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTAD 653 (1130)
Q Consensus 575 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~d 653 (1130)
.+|.+.+.+.+|.+ .+..+.++|-+.++ .+++.||...|||+-.|.+++..... + ..+....||++|..++....-
T Consensus 383 ~~g~l~H~l~ghsd-~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g-h-~kl~d~kFSqdgts~~lsd~h 459 (1113)
T KOG0644|consen 383 YTGQLLHNLMGHSD-EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG-H-GKLVDGKFSQDGTSIALSDDH 459 (1113)
T ss_pred ccchhhhhhccccc-ceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc-c-ceeeccccCCCCceEecCCCC
Confidence 99999999998877 78899999987655 46899999999999999888776533 2 367888999999999998888
Q ss_pred CcEEEEEcCCC
Q 001184 654 QGIKILANADG 664 (1130)
Q Consensus 654 g~i~iw~~~~~ 664 (1130)
|.+.|.....+
T Consensus 460 gql~i~g~gqs 470 (1113)
T KOG0644|consen 460 GQLYILGTGQS 470 (1113)
T ss_pred CceEEeccCCC
Confidence 99999876444
No 175
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=6.1e-16 Score=168.54 Aligned_cols=634 Identities=12% Similarity=0.122 Sum_probs=362.4
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCC----
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDG---- 421 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg---- 421 (1130)
|...-.++.|+|.| ++|-|+. ..|.+-|..+-+.+. .+.-|...|+.+.|.|-.
T Consensus 14 ~~sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s~q~iq-------------------sie~h~s~V~~VrWap~~~p~~ 71 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG--LIAYGSH-SLVSVVDSRSLQLIQ-------------------SIELHQSAVTSVRWAPAPSPRD 71 (1062)
T ss_pred CcccccccccCccc--eEEEecC-ceEEEEehhhhhhhh-------------------ccccCccceeEEEeccCCCchh
Confidence 44557789999998 6888874 488999988777665 466889999999998731
Q ss_pred --------CEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEec---CCCceEEEEEcCCCcEEEEe-cCCCe
Q 001184 422 --------NFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSY---PNKQLCIVTCGDDKLIRVWD-LSGRK 489 (1130)
Q Consensus 422 --------~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~---d~~~l~l~s~s~d~~v~iwd-~~~~~ 489 (1130)
-.||++...|.|.+||...+..+. .+..|.++|.+++|-+ +.+. +|+.-....++.+|+ .+|+.
T Consensus 72 llS~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd~Srd-~LlaIh~ss~lvLwntdtG~k 147 (1062)
T KOG1912|consen 72 LLSPSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARDDSRD-VLLAIHGSSTLVLWNTDTGEK 147 (1062)
T ss_pred ccCccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccCcchh-eeEEecCCcEEEEEEccCCce
Confidence 257888888999999999876443 5788999999999976 3434 677777788999999 99999
Q ss_pred eeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccC------CcceeeecCC-Cc--------------------
Q 001184 490 LFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDN------VGSRVDYDAP-GL-------------------- 542 (1130)
Q Consensus 490 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~------~~~~~~~~~~-~~-------------------- 542 (1130)
+...........|+.+.|-...++.+. +..|.+.+-+.-. ....+.+... ..
T Consensus 148 ~Wk~~ys~~iLs~f~~DPfd~rh~~~l-~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~s 226 (1062)
T KOG1912|consen 148 FWKYDYSHEILSCFRVDPFDSRHFCVL-GSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPAS 226 (1062)
T ss_pred eeccccCCcceeeeeeCCCCcceEEEE-ccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcc
Confidence 888776667777788777554444443 4445555443311 1111111110 00
Q ss_pred -----cEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCC--EEEEEeCCCcEEEE
Q 001184 543 -----WCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRN--RILAAGEDNQIKFW 615 (1130)
Q Consensus 543 -----~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~vw 615 (1130)
..-.++|+|.-+.++.... ...+.++|++-..++....-..+ .+..+.+-|+++ .++++-.||.+.+|
T Consensus 227 a~fity~a~faf~p~~rn~lfi~~----prellv~dle~~~~l~vvpier~-~akfv~vlP~~~rd~LfclH~nG~ltir 301 (1062)
T KOG1912|consen 227 AYFITYCAQFAFSPHWRNILFITF----PRELLVFDLEYECCLAVVPIERG-GAKFVDVLPDPRRDALFCLHSNGRLTIR 301 (1062)
T ss_pred hhHHHHHHhhhcChhhhceEEEEe----ccceEEEcchhhceeEEEEeccC-CcceeEeccCCCcceEEEEecCCeEEEE
Confidence 1223566776655554444 67799999988888777765444 556677777764 79999999999999
Q ss_pred eCCCC----------------ceeEEEeccCCCCCcceEEEcCC-CCEEEEEeCCCcEEEEEcCCCchhhhhhccccccc
Q 001184 616 DMDNV----------------NMLTSTEAEGGLPSLPRLRFNKE-GNLLVVTTADQGIKILANADGLRALRAIETRAYET 678 (1130)
Q Consensus 616 d~~~~----------------~~~~~~~~~~~~~~i~~v~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 678 (1130)
-.+.. +....+...... .+...+..|. ...++..-.+|.+.+|.+.++ +..........+.
T Consensus 302 vrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~-rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~-ri~~~~~s~~iel 379 (1062)
T KOG1912|consen 302 VRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEF-RPVIGASCPSTPSALAVLYSSGDSTFWQLSNG-RIHLDYRSSSIEL 379 (1062)
T ss_pred EeeccCccccccchhhccccccceEEEeechhc-ccceeecCCCChhhhhhhhhcchhHHHhhhcC-CcCcccccccccc
Confidence 76541 111111111111 1122222342 445566667888889998765 2211111000000
Q ss_pred cccccc----ccccccceeeccccccccc--cccCCCCCCCCccc-cc-CCCccccCCCCcccccccCCCccceeecccc
Q 001184 679 SRASTE----MKVPGSAVVTTITPVLSKA--ERVDRSSPARPSTI-LN-GADSAARGIEKPRNLEDISDKTKPWELTEIV 750 (1130)
Q Consensus 679 ~~~~~~----~~~~~~~~~~~~sp~~~~~--~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~ 750 (1130)
.. +.. ...++......+|-+.+.- ..+.+..|...-.. .. .+.......-..++.|...|+|.++++.+..
T Consensus 380 ~~-pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~ 458 (1062)
T KOG1912|consen 380 VL-PFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNA 458 (1062)
T ss_pred cc-cccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchh
Confidence 00 000 0000000111111110000 00001111111000 00 0111111112345688999999999987644
Q ss_pred CCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeC--CeEEeeecCCCCCCCCcccccccccccccCCCCcceecc-
Q 001184 751 DPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSN--GVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTND- 827 (1130)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d--g~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~- 827 (1130)
-...+ ..|...|.++.|......+-.+.+. .... .....+.+-++.+|.-....
T Consensus 459 v~~~f--------svht~~VkgleW~g~sslvSfsys~~n~~sg---------------~vrN~l~vtdLrtGlsk~fR~ 515 (1062)
T KOG1912|consen 459 VAASF--------SVHTSLVKGLEWLGNSSLVSFSYSHVNSASG---------------GVRNDLVVTDLRTGLSKRFRG 515 (1062)
T ss_pred hhhhh--------cccccceeeeeeccceeEEEeeecccccccc---------------ceeeeEEEEEccccccccccc
Confidence 32222 2388889999988766544333221 1011 11122344566666544332
Q ss_pred CCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEe-CC---------------CCcEE
Q 001184 828 VPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFH-PQ---------------DNNII 890 (1130)
Q Consensus 828 ~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s-p~---------------~~~~l 890 (1130)
+.+..+.+|+.+..|.-|+|++..- +.-+.+||+++..+++.+...-.-++.+.|+ |. ..+.+
T Consensus 516 l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~~~~si~qk~ls~q~sms~n~v 595 (1062)
T KOG1912|consen 516 LQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLPKHPSIKQKELSKQSSMSENLV 595 (1062)
T ss_pred CCCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeecccCCCCcccccchhhhhhhhcee
Confidence 2335678999999999999999998 7779999999887776665444558888888 31 01233
Q ss_pred EEEeCCCcEEEEEeec-------CeE-EEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCC
Q 001184 891 AIGMEDSTIQIYNVRV-------DEV-KTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAG 962 (1130)
Q Consensus 891 asg~~dg~v~iwd~~~-------~~~-~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~ 962 (1130)
+..+ +..+++.+.. +.. ....+.....+.+|+|- +..|+.|+.+|.+.+||+...+.+... ..+..
T Consensus 596 v~ds--~es~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAwk--~d~lv~GD~~GNl~~WDlg~R~SRg~~--d~p~~ 669 (1062)
T KOG1912|consen 596 VLDS--VESRIYHITLSALVVSDGSQVNTAWESFAFALCAMAWK--DDILVVGDVEGNLVVWDLGRRQSRGVR--DSPDP 669 (1062)
T ss_pred eecc--ccchheehhhhhhhhccccchhhHHHHHHHHHHhhhcc--CCeeEeecccCceeEEecccccccCcc--CCCCc
Confidence 3333 2233333321 111 11111122234456774 669999999999999998764322211 11111
Q ss_pred CCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcc
Q 001184 963 KLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLR 1042 (1130)
Q Consensus 963 ~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~ 1042 (1130)
......+.+-|....+++-....+-+||.+....+..+.+.. ....+..+.+......++. .|..+|+-.+....
T Consensus 670 --ra~~l~~~~ipG~~~~lvl~~d~~~lwdtk~~~lV~siag~d-ssfrlldvdlc~~~~~~l~--~d~~~Rf~~m~mks 744 (1062)
T KOG1912|consen 670 --RAHSLTFPQIPGDHTTLVLELDWLPLWDTKADTLVLSIAGMD-SSFRLLDVDLCEKSPLVLP--NDNKERFRVMPMKS 744 (1062)
T ss_pred --hhhheecccCCCCceEEEEecCcceecccccceeeeeeccCC-cceEEEEEEecccCceecC--CCCceeEEeccccC
Confidence 122223333444334555556678999999988888885542 1344555555544444433 45588877776655
Q ss_pred cccccC
Q 001184 1043 LRCRIA 1048 (1130)
Q Consensus 1043 ~~~~~~ 1048 (1130)
......
T Consensus 745 ~~ll~~ 750 (1062)
T KOG1912|consen 745 PPLLPK 750 (1062)
T ss_pred CccccC
Confidence 443333
No 176
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=5e-16 Score=169.17 Aligned_cols=542 Identities=13% Similarity=0.151 Sum_probs=314.2
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecC----------CCceEEEEEcCCCc
Q 001184 410 ISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYP----------NKQLCIVTCGDDKL 479 (1130)
Q Consensus 410 ~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d----------~~~l~l~s~s~d~~ 479 (1130)
..-.++.|+|.| +||.|+. ..|.+-|..+-+.+. .+.-|...|+.+.|.|. ..+++|+++...|.
T Consensus 16 sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iq---sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~Gr 90 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQ---SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGR 90 (1062)
T ss_pred ccccccccCccc-eEEEecC-ceEEEEehhhhhhhh---ccccCccceeEEEeccCCCchhccCccccceeEEeccccCc
Confidence 346788999987 7888765 468888988766554 67889999999999873 23457889999999
Q ss_pred EEEEe-cCCCeeeEecCCCcCEEEEeecccCCc--cEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEec-CCCe
Q 001184 480 IRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENI--HFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSA-DGSR 555 (1130)
Q Consensus 480 v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~ 555 (1130)
|.+|| ..+..+..+..|..++..++|.+..+. .+|+.-....++.+|+.++++.............++.+.| |.+.
T Consensus 91 Iil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh 170 (1062)
T KOG1912|consen 91 IILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRH 170 (1062)
T ss_pred EEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcce
Confidence 99999 888888999999999999999876443 4677778889999999999999998888877888899888 4455
Q ss_pred EEEeeecCCCCcEEEEeeCCC-------CceeEEEecccC----------------ce--------eEEEEEcCCCCEEE
Q 001184 556 LFSCGTSKEGDSHLVEWNESE-------GALKRTYIGFRK----------------KS--------AGVVQFDTTRNRIL 604 (1130)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~-------~~~~~~~~~~~~----------------~~--------v~~~~~~~~~~~l~ 604 (1130)
+..-+. .|.+.+-+.-. ++..+.-..|.+ .. ....+|+|.-+.++
T Consensus 171 ~~~l~s----~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~l 246 (1062)
T KOG1912|consen 171 FCVLGS----KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNIL 246 (1062)
T ss_pred EEEEcc----CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceE
Confidence 544443 45555444211 222222221111 00 01256788777677
Q ss_pred EEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcC--CCCEEEEEeCCCcEEEEEcCCCchhhhhhccccccccccc
Q 001184 605 AAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK--EGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRAS 682 (1130)
Q Consensus 605 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 682 (1130)
.......+.++|++-..++.....+.+ .+.-+.+-| ....|++.-.||.+.+|--+.....++....
T Consensus 247 fi~~prellv~dle~~~~l~vvpier~--~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~--------- 315 (1062)
T KOG1912|consen 247 FITFPRELLVFDLEYECCLAVVPIERG--GAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNA--------- 315 (1062)
T ss_pred EEEeccceEEEcchhhceeEEEEeccC--CcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccch---------
Confidence 777788999999999999988887765 344555555 4567999999999999975442121111100
Q ss_pred ccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCC-CCcccccccCCCccceeeccccCCcceeEEEec
Q 001184 683 TEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGI-EKPRNLEDISDKTKPWELTEIVDPLQCRVVAMP 761 (1130)
Q Consensus 683 ~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~ 761 (1130)
.++.+.+....+.+... ....+.+. ..+. ...++.--.+|...+|.+.....
T Consensus 316 ------------~l~~dl~~Q~~~vr~m~--~~rp~~~~---~cPs~~sa~avl~s~g~~~~w~l~~~ri---------- 368 (1062)
T KOG1912|consen 316 ------------SLSMDLGEQVHVVRPME--EFRPVIGA---SCPSTPSALAVLYSSGDSTFWQLSNGRI---------- 368 (1062)
T ss_pred ------------hhccccccceEEEeech--hcccceee---cCCCChhhhhhhhhcchhHHHhhhcCCc----------
Confidence 11111000000000000 00000000 0000 11122223345555565543100
Q ss_pred CCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEE
Q 001184 762 ESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVAL 841 (1130)
Q Consensus 762 ~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~ 841 (1130)
|... ...+++.-.. .--.+....+....-...+.+| +|.....+...
T Consensus 369 ----~~~~--~s~~iel~~p--f~f~~~~~~v~k~~l~~LS~dg-------------------------~h~sGs~~~~~ 415 (1062)
T KOG1912|consen 369 ----HLDY--RSSSIELVLP--FDFNLSTKLVGKTSLISLSDDG-------------------------SHSSGSTCVRM 415 (1062)
T ss_pred ----Cccc--cccccccccc--ccccCceeehhhccccchhhcC-------------------------CCCCCceeeec
Confidence 0000 0000000000 0000000001000000011111 22222222222
Q ss_pred -----------ecCCC-------EEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEE---------
Q 001184 842 -----------SKNDS-------YVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIG--------- 893 (1130)
Q Consensus 842 -----------s~dg~-------~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg--------- 893 (1130)
.|.|+ ++|.|. .|+|.++|+.++...+.+..|...|.++.|.- ...++-.+
T Consensus 416 ~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g-~sslvSfsys~~n~~sg 494 (1062)
T KOG1912|consen 416 RPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLG-NSSLVSFSYSHVNSASG 494 (1062)
T ss_pred ccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeecc-ceeEEEeeecccccccc
Confidence 12222 566776 79999999999999999999999999999976 44444222
Q ss_pred eCCCcEEEEEeecCeEE--EEEe-cCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEE
Q 001184 894 MEDSTIQIYNVRVDEVK--TKLK-GHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETR 970 (1130)
Q Consensus 894 ~~dg~v~iwd~~~~~~~--~~l~-~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~ 970 (1130)
+.-+.+.+-|+.+|... +-++ ....+|..+..|.-|++|+..-.|.-+.+||+++-.......... --++.
T Consensus 495 ~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~------P~it~ 568 (1062)
T KOG1912|consen 495 GVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLAL------PLITV 568 (1062)
T ss_pred ceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcC------CcEEE
Confidence 22245778888888532 2222 345789999999999999999999999999998754433222111 12566
Q ss_pred EEEc-CCCcE---------------EEEEcCCcEEEEECC-------CceeeeeeecCCCCCCCeEEEEECCCCCEEEEE
Q 001184 971 VQFH-SDQVR---------------LLVNHETQLAIYDGS-------KMECIRQWVPQDVLSSPISSAAYSCNSQLIYAT 1027 (1130)
Q Consensus 971 ~~~s-~d~~~---------------l~~~~d~~i~v~d~~-------~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~ 1027 (1130)
+.|+ |.-.- +++......+++.+. +|.....-.. .....+-.|+| .+..|+.|
T Consensus 569 leWsl~~~~si~qk~ls~q~sms~n~vv~ds~es~~~~~~~~a~~~sdgsq~~~a~e--sfafal~~mAw--k~d~lv~G 644 (1062)
T KOG1912|consen 569 LEWSLPKHPSIKQKELSKQSSMSENLVVLDSVESRIYHITLSALVVSDGSQVNTAWE--SFAFALCAMAW--KDDILVVG 644 (1062)
T ss_pred EeecccCCCCcccccchhhhhhhhceeeeccccchheehhhhhhhhccccchhhHHH--HHHHHHHhhhc--cCCeeEee
Confidence 6676 22111 111111223333322 1111100000 00122334555 36689999
Q ss_pred eCCCcEEEEeCCCcc
Q 001184 1028 FTDGSIGVFDADSLR 1042 (1130)
Q Consensus 1028 ~~Dg~i~vwd~~~~~ 1042 (1130)
..+|.+++||+...+
T Consensus 645 D~~GNl~~WDlg~R~ 659 (1062)
T KOG1912|consen 645 DVEGNLVVWDLGRRQ 659 (1062)
T ss_pred cccCceeEEeccccc
Confidence 999999999976543
No 177
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.77 E-value=1.8e-16 Score=165.46 Aligned_cols=271 Identities=15% Similarity=0.186 Sum_probs=190.1
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEe-CCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCE
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWD-VGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNF 423 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 423 (1130)
.|...|.||.|+.+.. ++.+++ |..+.+|. +.+.+.... .+.....+ ...|-++- +..=-.....
T Consensus 12 r~~e~vc~v~w~~~ee-i~~~~d-Dh~~~~~~~~~~~s~~~~------~~p~df~p-----t~~h~~~r-s~~~g~~~d~ 77 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEE-IYFVSD-DHQIFKWSDVSRDSVEVA------KLPDDFVP-----TDMHLGGR-SSGGGKGSDT 77 (737)
T ss_pred ccceeEEeecccccce-EEEecc-CceEEEeecccchhhhhh------hCCcccCC-----cccccccc-ccCCCCCcce
Confidence 4778889999999886 455554 55555554 443322110 00000000 00110000 0000012347
Q ss_pred EEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEecCCCcCEEEE
Q 001184 424 IGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSV 503 (1130)
Q Consensus 424 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~~h~~~v~~~ 503 (1130)
|+.++.||.+.+-+-...- ...+..|.++|.+-.|+|||. -|+|+|+||.|++|..+|-...++.....+|.|+
T Consensus 78 ~~i~s~DGkf~il~k~~rV----E~sv~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~ 151 (737)
T KOG1524|consen 78 LLICSNDGRFVILNKSARV----ERSISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCA 151 (737)
T ss_pred EEEEcCCceEEEecccchh----hhhhhhhhhhhhhcccCCCCc--eeeeecCCceEEEEeccchHHHHHhhcCceeEEE
Confidence 8888999999888754421 125789999999999999999 7999999999999999998888888888999999
Q ss_pred eecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEE
Q 001184 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTY 583 (1130)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 583 (1130)
+|.|+.+ ..+++.+ +.+.+=-+.....+.....|.+-|.++.|++..+.++++|. |-..++||.. |+.+..-
T Consensus 152 ~W~p~S~-~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGE----D~kfKvWD~~-G~~Lf~S 223 (737)
T KOG1524|consen 152 RWAPNSN-SIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGE----DFRFKIWDAQ-GANLFTS 223 (737)
T ss_pred EECCCCC-ceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCC----ceeEEeeccc-CcccccC
Confidence 9987654 4555554 45555566667778888999999999999999999999986 8999999964 5555554
Q ss_pred ecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEE
Q 001184 584 IGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKIL 659 (1130)
Q Consensus 584 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw 659 (1130)
..| ..++++++|.|+ +.++.++. +++|+=. ...+.|..++||+||..+++|+..|.+.+=
T Consensus 224 ~~~-ey~ITSva~npd-~~~~v~S~-nt~R~~~-------------p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 224 AAE-EYAITSVAFNPE-KDYLLWSY-NTARFSS-------------PRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred Chh-ccceeeeeeccc-cceeeeee-eeeeecC-------------CCccceEEEEEcCCCceeeccccCceEEEe
Confidence 444 348999999999 55555554 3444211 123378999999999999999999987653
No 178
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.77 E-value=1.2e-16 Score=162.14 Aligned_cols=297 Identities=17% Similarity=0.204 Sum_probs=215.7
Q ss_pred ccceEEEEEeccCC-eEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCC
Q 001184 767 ASKVARLLYTNSGI-GILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKND 845 (1130)
Q Consensus 767 ~~~i~~l~~s~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg 845 (1130)
..++.++.|.++.. .+++++.|..|++|.++.......+ ...........|...|.++.|+|+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~---------------~~V~y~s~Ls~H~~aVN~vRf~p~g 77 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD---------------MKVEYLSSLSRHTRAVNVVRFSPDG 77 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc---------------eeEEEeecccCCcceeEEEEEcCCc
Confidence 45788888888877 9999999999999988764332111 1222223344799999999999999
Q ss_pred CEEEEEe-CCeEEEEECC--------C--------ceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCe
Q 001184 846 SYVMSAG-GGKVSLFNMM--------N--------FKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDE 908 (1130)
Q Consensus 846 ~~la~~~-dg~i~iwd~~--------~--------~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~ 908 (1130)
..+|+|+ +|.|.+|-.. + ....+.+.+|...|..++|+| ++.++++|+.|..+++||+..|.
T Consensus 78 elLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G~ 156 (434)
T KOG1009|consen 78 ELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAGQ 156 (434)
T ss_pred CeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEeccce
Confidence 9999999 5889999765 3 344566778999999999999 89999999999999999999999
Q ss_pred EEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceee---EeccCC-C-------------CCCCeEEE
Q 001184 909 VKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIA---IQLPAG-K-------------LPVGETRV 971 (1130)
Q Consensus 909 ~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~---~~~~~~-~-------------~~~~v~~~ 971 (1130)
....+..|..-|..++|.|-++++++-+.|...+.+.+...+...... ...... + ...-...+
T Consensus 157 l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRl 236 (434)
T KOG1009|consen 157 LLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRL 236 (434)
T ss_pred eEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhc
Confidence 999999999999999999999999999999877777766533222111 000000 0 11234567
Q ss_pred EEcCCCcEEEEE-----cCC-----cEEEEECCCce-eeeeeecCCCCCCCeEEEEECC------------------CCC
Q 001184 972 QFHSDQVRLLVN-----HET-----QLAIYDGSKME-CIRQWVPQDVLSSPISSAAYSC------------------NSQ 1022 (1130)
Q Consensus 972 ~~s~d~~~l~~~-----~d~-----~i~v~d~~~~~-~~~~~~~~~~~~~~v~~v~~s~------------------dg~ 1022 (1130)
+|+|||.+|++. ..+ ..++|+-...+ ++..+... ..++..+.|+| -+-
T Consensus 237 sfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~---~k~~lavr~~pVy~elrp~~~~~~~~~lpyrl 313 (434)
T KOG1009|consen 237 SFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSP---KKPALAVRFSPVYYELRPLSSEKFLFVLPYRL 313 (434)
T ss_pred ccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCC---CcceEEEEeeeeEEEeccccccccccccccce
Confidence 899999999972 122 34566654322 23333333 56667777765 223
Q ss_pred EEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 001184 1023 LIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSE 1094 (1130)
Q Consensus 1023 ~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~~ 1094 (1130)
.+|.++ ...|+|||.++.+.++....-.| ...+.++|++ |+..|+..+.||-..+--+..
T Consensus 314 vfaiAt-~~svyvydtq~~~P~~~v~nihy----------~~iTDiaws~-dg~~l~vSS~DGyCS~vtfe~ 373 (434)
T KOG1009|consen 314 VFAIAT-KNSVYVYDTQTLEPLAVVDNIHY----------SAITDIAWSD-DGSVLLVSSTDGFCSLVTFEP 373 (434)
T ss_pred EEEEee-cceEEEeccccccceEEEeeeee----------eeecceeecC-CCcEEEEeccCCceEEEEEcc
Confidence 455555 66899999998888777753333 3456789998 588999999999766655543
No 179
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=1.2e-17 Score=176.36 Aligned_cols=265 Identities=14% Similarity=0.224 Sum_probs=190.8
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEE
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 424 (1130)
.|.+.|++++|.|... .|++++.||++.+|+++....-. .....+...+.+|.++|.|++.+++++.+
T Consensus 292 s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s~-----------~~~~epi~tfraH~gPVl~v~v~~n~~~~ 359 (577)
T KOG0642|consen 292 SHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKSA-----------EKDVEPILTFRAHEGPVLCVVVPSNGEHC 359 (577)
T ss_pred cchhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCcc-----------ccceeeeEEEecccCceEEEEecCCceEE
Confidence 4999999999999987 69999999999999994422111 11122445789999999999999999999
Q ss_pred EEEeCCCeEEEEEecCCc-------cceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEecCC-
Q 001184 425 GVAFTKHLIHLYTYQGSN-------DLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGH- 496 (1130)
Q Consensus 425 as~~~d~~i~vwd~~~~~-------~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~~h- 496 (1130)
.+|+.||+|+.|++.... .......+.||.+.|+.+++|+... .|++|+.||++++|+.++....+|...
T Consensus 360 ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~~~f~~~~ 437 (577)
T KOG0642|consen 360 YSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESPCTFGEPK 437 (577)
T ss_pred EeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCccccCCcc
Confidence 999999999999664211 1112235789999999999999888 699999999999999433333444322
Q ss_pred -CcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCC-------ccEEEEEEecCCCeEEEeeecCCCCcE
Q 001184 497 -EAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPG-------LWCTTMLYSADGSRLFSCGTSKEGDSH 568 (1130)
Q Consensus 497 -~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-------~~v~~~~~s~~~~~l~~~~~~~~~~~~ 568 (1130)
.+.-.++.+..+.- ...++...-+.--+.+++.......+.... ..+..+...|.+...+++.. ++.
T Consensus 438 e~g~Plsvd~~ss~~-a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~he----d~~ 512 (577)
T KOG0642|consen 438 EHGYPLSVDRTSSRP-AHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHE----DRS 512 (577)
T ss_pred ccCCcceEeeccchh-HhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEeccc----CCc
Confidence 22334454432211 112222222222333333333333332211 24677888888888888875 899
Q ss_pred EEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEecc
Q 001184 569 LVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAE 629 (1130)
Q Consensus 569 i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 629 (1130)
|+++|..++.++.....|.. .++++++.|+|.+|++++.|+.+++|.+....++.....+
T Consensus 513 Ir~~dn~~~~~l~s~~a~~~-svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 513 IRFFDNKTGKILHSMVAHKD-SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred eecccccccccchheeeccc-eecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 99999999999999888776 8999999999999999999999999999877666554443
No 180
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=7.3e-18 Score=178.03 Aligned_cols=251 Identities=16% Similarity=0.180 Sum_probs=190.0
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEec-----CCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCC
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQ-----GSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK 478 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~-----~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~ 478 (1130)
++..|...|..++|.|-...|++++.||++++|+++ .+..+.+..++.+|.++|.|+++.+++. .+++|+.||
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg 366 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDG 366 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCc
Confidence 577899999999999999999999999999999993 3344677889999999999999999999 799999999
Q ss_pred cEEEEe-c------CC----CeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCC--CccEE
Q 001184 479 LIRVWD-L------SG----RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP--GLWCT 545 (1130)
Q Consensus 479 ~v~iwd-~------~~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~--~~~v~ 545 (1130)
+|+.|+ . +. .....+.||++.|+.++++... ..|++++.||+++.|+...... ..+... .....
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~--~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK--DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL 443 (577)
T ss_pred eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc--cceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence 999995 1 11 2345678999999999998766 4699999999999999876555 222222 22334
Q ss_pred EEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccC------ceeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001184 546 TMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRK------KSAGVVQFDTTRNRILAAGEDNQIKFWDMDN 619 (1130)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 619 (1130)
++.+-.....+..++. ..+.-.+++......+..+..... ..+..+..+|.+.+.+++.+|+.|+++|..+
T Consensus 444 svd~~ss~~a~~~~s~---~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~ 520 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASF---RFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKT 520 (577)
T ss_pred eEeeccchhHhhhhhc---ccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccc
Confidence 4554433211212110 022223344444444444432211 2455678899999999999999999999999
Q ss_pred CceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 620 VNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 620 ~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
+.++.....+.. .++++++.|+|.+|++++.||.+++|.+...
T Consensus 521 ~~~l~s~~a~~~--svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 521 GKILHSMVAHKD--SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred cccchheeeccc--eecceeecCCCceEEeecCCceeehhhccch
Confidence 999888776644 7999999999999999999999999998654
No 181
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.7e-16 Score=158.93 Aligned_cols=294 Identities=12% Similarity=0.148 Sum_probs=208.0
Q ss_pred eccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCC
Q 001184 343 TMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN 422 (1130)
Q Consensus 343 ~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~ 422 (1130)
.++|.+.|.++.||.+|+ +||+|+.|..++||+++..-..+. ..+++. .-..|...|.|++|....+
T Consensus 52 ~~~H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k~-----------~KPI~~-~~~~H~SNIF~L~F~~~N~ 118 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRKT-----------PKPIGV-MEHPHRSNIFSLEFDLENR 118 (609)
T ss_pred hhhhccccceeeeccCCe-EEeecCCcceeeeechHHHHhhcC-----------CCCcee-ccCccccceEEEEEccCCe
Confidence 457999999999999998 699999999999999865332221 011111 2335678999999999999
Q ss_pred EEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCC-e--eeEecCCCc
Q 001184 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGR-K--LFQFEGHEA 498 (1130)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~-~--~~~~~~h~~ 498 (1130)
+|.+|+.+++|..-|+++.+.+... .-....+.|+.+..+|-.. .+++.+.++.|.+|| .... . +..+.....
T Consensus 119 ~~~SG~~~~~VI~HDiEt~qsi~V~-~~~~~~~~VY~m~~~P~DN--~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~ 195 (609)
T KOG4227|consen 119 FLYSGERWGTVIKHDIETKQSIYVA-NENNNRGDVYHMDQHPTDN--TLIVVTRAKLVSFIDNRDRQNPISLVLPANSGK 195 (609)
T ss_pred eEecCCCcceeEeeecccceeeeee-cccCcccceeecccCCCCc--eEEEEecCceEEEEeccCCCCCCceeeecCCCc
Confidence 9999999999999999997655421 1122345899999999987 899999999999999 3322 2 223333445
Q ss_pred CEEEEeecccCCccEEEEEecCCcEEEEEccCCcceee-------ecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEE
Q 001184 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVD-------YDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVE 571 (1130)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~-------~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1130)
....+.|+|... .+|++.+..+.+-+||.+....... +......-.++.|+|.|+.+.+.-. ...-.+
T Consensus 196 ~F~t~~F~P~~P-~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR----~~~P~~ 270 (609)
T KOG4227|consen 196 NFYTAEFHPETP-ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR----GKCPLY 270 (609)
T ss_pred cceeeeecCCCc-eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc----cCCCEE
Confidence 566777887543 6889999999999999987654431 1111222367889999999887643 233446
Q ss_pred eeCCCCcee-EEEecccC------ceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc-----------------------
Q 001184 572 WNESEGALK-RTYIGFRK------KSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVN----------------------- 621 (1130)
Q Consensus 572 wd~~~~~~~-~~~~~~~~------~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~----------------------- 621 (1130)
||+-+.++. ..+. |.. ..+.+++|..+- .+++|+.+-.|++|.+....
T Consensus 271 ~D~~S~R~~V~k~D-~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~ 348 (609)
T KOG4227|consen 271 FDFISQRCFVLKSD-HNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEK 348 (609)
T ss_pred eeeecccceeEecc-CCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecc
Confidence 776654432 2222 221 134557776554 59999999999999875311
Q ss_pred eeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001184 622 MLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1130)
Q Consensus 622 ~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~ 661 (1130)
.+..+.+| ..-++.+.|+|...+|++.+-.+.++||.-
T Consensus 349 ~~~VLrGH--RSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 349 ELTVLRGH--RSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred eeEEEecc--cccccceeecCCcceEeccchhhheecccc
Confidence 12334444 346789999999999999999999999964
No 182
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.4e-16 Score=166.86 Aligned_cols=236 Identities=14% Similarity=0.219 Sum_probs=161.0
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iw 483 (1130)
.+.||++.|.|++|+.||.+|++|+.|-.+.|||.-..+.+... -.||.+.|.++.|-|....-+++||..|..|+++
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI--~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSI--STGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeee--ecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 57899999999999999999999999999999999876655432 3699999999999997655589999999999999
Q ss_pred ecCC-----------CeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCccee----------eecCCCc
Q 001184 484 DLSG-----------RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV----------DYDAPGL 542 (1130)
Q Consensus 484 d~~~-----------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~----------~~~~~~~ 542 (1130)
|.+. .....+..|...|..++..|.. .+.+.+++.||+++-+|++...... .+...--
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~-PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNG-PHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCC-CceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 9331 2345566799999988875532 2789999999999999998632211 1111122
Q ss_pred cEEEEEEecCCC-eEEEeeecCCCCcEEEEeeCCCCceeEEEecccC------ceeEEE-EEcCCCCEEEEEeCCCcEEE
Q 001184 543 WCTTMLYSADGS-RLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRK------KSAGVV-QFDTTRNRILAAGEDNQIKF 614 (1130)
Q Consensus 543 ~v~~~~~s~~~~-~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~------~~v~~~-~~~~~~~~l~~~~~dg~i~v 614 (1130)
...++.++|... +|++|+. +...++||.+. .+..+..... ....|+ -|+|.+ + ...+|
T Consensus 202 elk~ltisp~rp~~laVGgs----dpfarLYD~Rr--~lks~~s~~~~~~~pp~~~~cv~yf~p~h--l--kn~~g---- 267 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGS----DPFARLYDRRR--VLKSFRSDGTMNTCPPKDCRCVRYFSPGH--L--KNSQG---- 267 (758)
T ss_pred eeeeeeecCCCCceEEecCC----Cchhhhhhhhh--hccCCCCCccccCCCCcccchhheecCcc--c--cCccc----
Confidence 567889999655 5666665 78899999532 1111111000 001111 122211 0 01111
Q ss_pred EeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhh
Q 001184 615 WDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRAL 668 (1130)
Q Consensus 615 wd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 668 (1130)
..... ...++-+.|+|+|.-|.+.-....|+++|+..++...
T Consensus 268 ------n~~~~------~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~ 309 (758)
T KOG1310|consen 268 ------NLDRY------ITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPT 309 (758)
T ss_pred ------ccccc------eeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCce
Confidence 11000 0135778999999888888788899999998775443
No 183
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.73 E-value=4.4e-16 Score=150.44 Aligned_cols=183 Identities=14% Similarity=0.237 Sum_probs=130.0
Q ss_pred eeEEEEec--CCCEEEEEeCCeEEEEECCCceeEEEEe-CCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEee-cCeEEE
Q 001184 836 VPCVALSK--NDSYVMSAGGGKVSLFNMMNFKVMTTFM-SPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVR-VDEVKT 911 (1130)
Q Consensus 836 i~~l~~s~--dg~~la~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~-~~~~~~ 911 (1130)
.++-+||| ||..+++.+|++++.||+++..+...+. +|...|..+.|.|+-..+||+++.||.|+|||.+ +..+++
T Consensus 173 ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~ 252 (370)
T KOG1007|consen 173 FTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQ 252 (370)
T ss_pred ecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccc
Confidence 34455665 8899999999999999999887776665 7888999999999666789999999999999998 457789
Q ss_pred EEecCCCCeeEEEEccCC-CeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEE
Q 001184 912 KLKGHQKHITGLAFSTNL-NILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAI 990 (1130)
Q Consensus 912 ~l~~h~~~V~~l~~s~dg-~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v 990 (1130)
.+.+|+-.|+++.|+|.. ++++++|.|..|.+|...+-............... ++ .+..=++
T Consensus 253 el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~----------e~-------~dseer~ 315 (370)
T KOG1007|consen 253 ELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESES----------ED-------EDSEERV 315 (370)
T ss_pred ccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccC----------cc-------hhhHHhc
Confidence 999999999999999964 57779999999999987762221111111000000 00 0000010
Q ss_pred EECCCceeeeeeecCCCCCCCeEEEEECCCCC-EEEEEeCCCcEEEEeCC
Q 001184 991 YDGSKMECIRQWVPQDVLSSPISSAAYSCNSQ-LIYATFTDGSIGVFDAD 1039 (1130)
Q Consensus 991 ~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~-~l~t~~~Dg~i~vwd~~ 1039 (1130)
--+.+ ..+..+..| ...|++++||.-.. ++|+-+.||++.|=.+.
T Consensus 316 kpL~d-g~l~tydeh---EDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 316 KPLQD-GQLETYDEH---EDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccccc-ccccccccc---ccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 01111 223344444 78999999998666 56667789999887765
No 184
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.2e-16 Score=158.46 Aligned_cols=292 Identities=14% Similarity=0.169 Sum_probs=197.0
Q ss_pred EEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecC--CC-ccEE
Q 001184 470 CIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA--PG-LWCT 545 (1130)
Q Consensus 470 ~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~--~~-~~v~ 545 (1130)
.++++-..|.|++|| .+|+.+..|+++...++.+.|........+++++.||+|++||++.......+.. +. .+..
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~ 121 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI 121 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence 678888899999999 8899999999999999999998755667899999999999999998776654433 22 3566
Q ss_pred EEEEecCCCeEEEeeecCCCCcEEEEeeCCCCce-eEEEecccCceeEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCc--
Q 001184 546 TMLYSADGSRLFSCGTSKEGDSHLVEWNESEGAL-KRTYIGFRKKSAGVVQFDTTR-NRILAAGEDNQIKFWDMDNVN-- 621 (1130)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~-- 621 (1130)
+++..-.++.++++..-...+..|.+||.+..+. ++.+...|...|++++|+|.. +.|++|+.||-|.+||+....
T Consensus 122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee 201 (376)
T KOG1188|consen 122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE 201 (376)
T ss_pred EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch
Confidence 6666667777777765445588999999988665 666665555589999999976 589999999999999997642
Q ss_pred --eeEEEeccCCCCCcceEEEcCCC-CEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeecccc
Q 001184 622 --MLTSTEAEGGLPSLPRLRFNKEG-NLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITP 698 (1130)
Q Consensus 622 --~~~~~~~~~~~~~i~~v~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 698 (1130)
++.++. +...|..+.|..++ +.+.+.+..++..+|+++.+..... +...............+ ...+...+|
T Consensus 202 DaL~~viN---~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~-~~~~~~~~~d~r~~~~~--dY~I~~~~~ 275 (376)
T KOG1188|consen 202 DALLHVIN---HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETW-LENPDVSADDLRKEDNC--DYVINEHSP 275 (376)
T ss_pred hhHHHhhc---ccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhc-ccCccchhhhHHhhhhh--hheeecccC
Confidence 222332 22368899998876 4588889999999999988843222 11110000000000000 000001111
Q ss_pred ccccccccCCCCCCCCcccccCCCccccCCCCccc-ccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEec
Q 001184 699 VLSKAERVDRSSPARPSTILNGADSAARGIEKPRN-LEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTN 777 (1130)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 777 (1130)
. +....+ .++..++..++.+..............+. .+|..-|.++.|..
T Consensus 276 ~----------------------------~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~-g~~~eiVR~i~~~~ 326 (376)
T KOG1188|consen 276 G----------------------------DKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQ-GGHEEIVRDILFDV 326 (376)
T ss_pred C----------------------------CcceEEEeccccCceeEEEeeecccccccCcccccc-CCcHHHHHHHhhhc
Confidence 1 111222 22224555555554322222222222222 45778888999999
Q ss_pred cCCeEEEeeeCCeEEeeec
Q 001184 778 SGIGILALWSNGVQKLWKW 796 (1130)
Q Consensus 778 ~g~~l~~~~~dg~i~iw~~ 796 (1130)
.+..+.++|.||.+.+|..
T Consensus 327 ~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 327 KNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred ccceeeccCCCceEEEEec
Confidence 9999999999999999974
No 185
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=3.3e-15 Score=140.81 Aligned_cols=283 Identities=11% Similarity=0.119 Sum_probs=197.3
Q ss_pred ceEEEEEeccCCeEEEeeeCCeEEeeecCCC---CCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCC
Q 001184 769 KVARLLYTNSGIGILALWSNGVQKLWKWNRT---EQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKND 845 (1130)
Q Consensus 769 ~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg 845 (1130)
.|.+-+++|.+++++++..+|.|.++.+..- +..+.++. ... -..+|.+++..++|. .
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~----------------~iv-~eqahdgpiy~~~f~--d 72 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKL----------------KIV-PEQAHDGPIYYLAFH--D 72 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCc----------------cee-eccccCCCeeeeeee--h
Confidence 4556678999999999999999999987642 12222221 110 113799999999997 5
Q ss_pred CEEEEEeCCeEEEEECCCcee----EE--EE-------eCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEE
Q 001184 846 SYVMSAGGGKVSLFNMMNFKV----MT--TF-------MSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTK 912 (1130)
Q Consensus 846 ~~la~~~dg~i~iwd~~~~~~----~~--~~-------~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~ 912 (1130)
.+|++++||.|+-|..+.... .. .. ...-..|+++-..|..+.++. ++.|+.++-||+++|+...+
T Consensus 73 ~~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~-AgGD~~~y~~dlE~G~i~r~ 151 (325)
T KOG0649|consen 73 DFLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILF-AGGDGVIYQVDLEDGRIQRE 151 (325)
T ss_pred hheeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEE-ecCCeEEEEEEecCCEEEEE
Confidence 688899999999987653221 11 11 112356899999995555554 55899999999999999999
Q ss_pred EecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEecc----CCCCCCCeEEEEEcCCCcEEEEEcCCcE
Q 001184 913 LKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLP----AGKLPVGETRVQFHSDQVRLLVNHETQL 988 (1130)
Q Consensus 913 l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~----~~~~~~~v~~~~~s~d~~~l~~~~d~~i 988 (1130)
++||++-|.++.--.....++||++||++++||.++++.......... ..+....| .+..-+..+|+++....+
T Consensus 152 ~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wi--gala~~edWlvCGgGp~l 229 (325)
T KOG0649|consen 152 YRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWI--GALAVNEDWLVCGGGPKL 229 (325)
T ss_pred EcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCcee--EEEeccCceEEecCCCce
Confidence 999999999999855566889999999999999999876543321111 11111233 344456678999999999
Q ss_pred EEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEE
Q 001184 989 AIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVV 1068 (1130)
Q Consensus 989 ~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1068 (1130)
.+|.++..++...+... .++..+.|-.| .++++++.+.|.-|.+. |.+...++. .+..++..
T Consensus 230 slwhLrsse~t~vfpip----a~v~~v~F~~d--~vl~~G~g~~v~~~~l~-Gvl~a~ip~-----------~s~~c~s~ 291 (325)
T KOG0649|consen 230 SLWHLRSSESTCVFPIP----ARVHLVDFVDD--CVLIGGEGNHVQSYTLN-GVLQANIPV-----------ESTACYSA 291 (325)
T ss_pred eEEeccCCCceEEEecc----cceeEeeeecc--eEEEeccccceeeeeec-cEEEEeccC-----------Cccceeee
Confidence 99999999988887664 68888888644 67778878889999875 555544442 11233444
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEe
Q 001184 1069 TSHPQEPNQLAVGLTDGSVKVIE 1091 (1130)
Q Consensus 1069 ~~~~~~~~~l~s~~~Dg~v~vW~ 1091 (1130)
.|.-+--.+|..++..+.+.++.
T Consensus 292 s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 292 SWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred cccCCceEEEEecccceeeeeee
Confidence 44433234566666677776653
No 186
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.72 E-value=9.6e-17 Score=153.15 Aligned_cols=283 Identities=17% Similarity=0.209 Sum_probs=196.7
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeec-CCCccEEEEEEcCCCCE
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVK-DSSISVSRVAWSPDGNF 423 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~~spdg~~ 423 (1130)
.|...|+++.|-.+++ |.+|..-|.|++|++.+.+... .+. .|...|+.+.--|+ ..
T Consensus 12 p~~~~v~s~~fqa~~r--L~sg~~~G~V~~w~lqt~r~~~-------------------~~r~~g~~~it~lq~~p~-d~ 69 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANER--LMSGLSVGIVKMWVLQTERDLP-------------------LIRLFGRLFITNLQSIPN-DS 69 (323)
T ss_pred cccchheehhhccchh--hhcccccceEEEEEeecCccch-------------------hhhhhccceeeceeecCC-cc
Confidence 6999999999999986 7899999999999999876553 233 56778999998888 56
Q ss_pred EEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecC-----CCce--EEEEEcCCC-cEEEEe-cCCCeeeEe-
Q 001184 424 IGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYP-----NKQL--CIVTCGDDK-LIRVWD-LSGRKLFQF- 493 (1130)
Q Consensus 424 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d-----~~~l--~l~s~s~d~-~v~iwd-~~~~~~~~~- 493 (1130)
|.+-+.|+.+.+|++..+.-+ ..|.-.++++-|.+- ++.. .++.-+... .+++-| .+...+...
T Consensus 70 l~tqgRd~~L~lw~ia~s~~i------~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~d 143 (323)
T KOG0322|consen 70 LDTQGRDPLLILWTIAYSAFI------SIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIAD 143 (323)
T ss_pred hhhcCCCceEEEEEccCcceE------EEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccC
Confidence 778889999999999875432 234445556655542 1100 111111100 022222 111111111
Q ss_pred ---cCCCcCEEEEeecccCCc-cEEEEEecCCcEEEEEccCCcceee----------ecCCCccEEEEEEecCCCeEEEe
Q 001184 494 ---EGHEAPVYSVCPHQKENI-HFIFSTAVDGKIKAWLYDNVGSRVD----------YDAPGLWCTTMLYSADGSRLFSC 559 (1130)
Q Consensus 494 ---~~h~~~v~~~~~~~~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~----------~~~~~~~v~~~~~s~~~~~l~~~ 559 (1130)
.+..+.+.+..+...... -+++.|-++|.+.+||+.++..... ...|..+|.++.|.+....=+++
T Consensus 144 d~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisg 223 (323)
T KOG0322|consen 144 DSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISG 223 (323)
T ss_pred chhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCC
Confidence 134456666664333222 3566777899999999998744433 34566789999998766655565
Q ss_pred eecCCCCcEEEEeeCCC--Cce-eEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcc
Q 001184 560 GTSKEGDSHLVEWNESE--GAL-KRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLP 636 (1130)
Q Consensus 560 ~~~~~~~~~i~~wd~~~--~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~ 636 (1130)
+. +..+..|++.. +.+ ++.........+..+.+-||++.++++|.|+.||||+.++.+++..++.|.. .|+
T Consensus 224 ga----~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsa--gvn 297 (323)
T KOG0322|consen 224 GA----DDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSA--GVN 297 (323)
T ss_pred Cc----cccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhc--cee
Confidence 54 56677777643 222 1112122333677889999999999999999999999999999999998874 899
Q ss_pred eEEEcCCCCEEEEEeCCCcEEEEEc
Q 001184 637 RLRFNKEGNLLVVTTADQGIKILAN 661 (1130)
Q Consensus 637 ~v~~s~~~~~l~~~~~dg~i~iw~~ 661 (1130)
+++|+|+..++|.++.|+.|.+|++
T Consensus 298 ~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 298 AVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEEeCCCCchhhhccCCceEEeeec
Confidence 9999999999999999999999985
No 187
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=4.4e-17 Score=168.71 Aligned_cols=292 Identities=17% Similarity=0.242 Sum_probs=227.0
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcC--CCC
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP--DGN 422 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--dg~ 422 (1130)
.|.+.|..|-|...|. +|++|+.|..|.+||+.++..... +..||...|....|-| +.+
T Consensus 140 ~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~------------------f~SGH~~NvfQaKFiP~s~d~ 200 (559)
T KOG1334|consen 140 KHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLS------------------FESGHCNNVFQAKFIPFSGDR 200 (559)
T ss_pred CCCCccceeeecccCc-eeeccCccceEEeehhhccCcccc------------------cccccccchhhhhccCCCCCc
Confidence 3999999999999998 699999999999999998887653 4568999999999988 456
Q ss_pred EEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeee---EecCCCc
Q 001184 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLF---QFEGHEA 498 (1130)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~---~~~~h~~ 498 (1130)
-|++++.||.|++=.+...........+..|.++|.-++.-|+..+ -|.+++.|+.+.-.| ..+.... .-..+..
T Consensus 201 ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~ 279 (559)
T KOG1334|consen 201 TIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDVPAEKFVCREADEK 279 (559)
T ss_pred CceeccccCceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCCccceeeeeccCCc
Confidence 8999999999999887655545545567889999999999999887 799999999999999 4443322 2223333
Q ss_pred ---CEEEEeecccCCccEEEEEecCCcEEEEEccCCcce------eeec------CCCccEEEEEEecCCCeEEEeeecC
Q 001184 499 ---PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSR------VDYD------APGLWCTTMLYSADGSRLFSCGTSK 563 (1130)
Q Consensus 499 ---~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~------~~~~------~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1130)
....++.+|.. ...+++++.|..+++||.+..... ..+. .....|++++|+.++.-+++.-.
T Consensus 280 ~~v~L~~Ia~~P~n-t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn-- 356 (559)
T KOG1334|consen 280 ERVGLYTIAVDPRN-TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN-- 356 (559)
T ss_pred cceeeeeEecCCCC-ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec--
Confidence 45677777654 358999999999999998754332 1111 22236999999976655555443
Q ss_pred CCCcEEEEeeCCC--C----------ceeE-EEecccCc-eeEEE-EEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEec
Q 001184 564 EGDSHLVEWNESE--G----------ALKR-TYIGFRKK-SAGVV-QFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEA 628 (1130)
Q Consensus 564 ~~~~~i~~wd~~~--~----------~~~~-~~~~~~~~-~v~~~-~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 628 (1130)
+-.|+++...- | ..+. .++||.+. .|..+ .|.|...++++|++-|.|.||+-.+++.+..+.+
T Consensus 357 --De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Meg 434 (559)
T KOG1334|consen 357 --DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEG 434 (559)
T ss_pred --ccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhc
Confidence 77788885432 2 2233 38888663 34444 4678889999999999999999999999999988
Q ss_pred cCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001184 629 EGGLPSLPRLRFNKEGNLLVVTTADQGIKILANAD 663 (1130)
Q Consensus 629 ~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 663 (1130)
..+ -|+|+.-+|--..||+.+-|..|+||...+
T Consensus 435 Dr~--VVNCLEpHP~~PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 435 DRH--VVNCLEPHPHLPVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred ccc--eEeccCCCCCCchhhccCCccceeeecCCc
Confidence 777 699999999999999999999999998643
No 188
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=5.4e-16 Score=153.86 Aligned_cols=275 Identities=13% Similarity=0.165 Sum_probs=191.2
Q ss_pred EEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcC--CCCEEEEEeCCCeEEEEEec
Q 001184 362 LLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP--DGNFIGVAFTKHLIHLYTYQ 439 (1130)
Q Consensus 362 llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--dg~~las~~~d~~i~vwd~~ 439 (1130)
.+|++...|+|+|||..+|+.+. .+++|...+..++|.. ....+.+|+.||+|++||++
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~-------------------~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~R 102 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLE-------------------EFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIR 102 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhh-------------------eecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEee
Confidence 58888889999999999988775 4778888999999987 46789999999999999999
Q ss_pred CCccceeeeeeecCC-CCeeEEEEecCCCceEEEEEc----CCCcEEEEe-cCCCe-eeE-ecCCCcCEEEEeecccCCc
Q 001184 440 GSNDLCQSLEIDAHV-GGVNDLAFSYPNKQLCIVTCG----DDKLIRVWD-LSGRK-LFQ-FEGHEAPVYSVCPHQKENI 511 (1130)
Q Consensus 440 ~~~~~~~~~~~~~h~-~~V~~i~~s~d~~~l~l~s~s----~d~~v~iwd-~~~~~-~~~-~~~h~~~v~~~~~~~~~~~ 511 (1130)
+.....+. .+.+|. .+..+++....++ ++++|. .|-.|.+|| ...+. +.. ...|...|++++|+|+..
T Consensus 103 s~~e~a~~-~~~~~~~~~f~~ld~nck~~--ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~p- 178 (376)
T KOG1188|consen 103 SQAESARI-SWTQQSGTPFICLDLNCKKN--IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDP- 178 (376)
T ss_pred cchhhhhe-eccCCCCCcceEeeccCcCC--eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCC-
Confidence 87655433 345555 4566666665666 666664 367899999 43333 444 457999999999999654
Q ss_pred cEEEEEecCCcEEEEEccCCcce---eeecCCCccEEEEEEecCC-CeEEEeeecCCCCcEEEEeeCCCCceeEEEeccc
Q 001184 512 HFIFSTAVDGKIKAWLYDNVGSR---VDYDAPGLWCTTMLYSADG-SRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFR 587 (1130)
Q Consensus 512 ~~l~s~s~dg~i~vwd~~~~~~~---~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~ 587 (1130)
++|++||.||-|.++|+...... .....+...|..+.|..++ +.|.+.+. .....+|+++.+.....+....
T Consensus 179 nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH----~Etf~~~ele~~~~~~~~~~~~ 254 (376)
T KOG1188|consen 179 NLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTH----METFAIYELEDGSEETWLENPD 254 (376)
T ss_pred CeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEc----cCceeEEEccCCChhhcccCcc
Confidence 79999999999999999765322 2333455679999999887 33544443 7789999998887554443221
Q ss_pred Cc---------eeEEE-EEcC-CCCEEEEEeC-CCcEEEEeCC---CCc---eeEEEeccCCCCCcceEEEcCCCCEEEE
Q 001184 588 KK---------SAGVV-QFDT-TRNRILAAGE-DNQIKFWDMD---NVN---MLTSTEAEGGLPSLPRLRFNKEGNLLVV 649 (1130)
Q Consensus 588 ~~---------~v~~~-~~~~-~~~~l~~~~~-dg~i~vwd~~---~~~---~~~~~~~~~~~~~i~~v~~s~~~~~l~~ 649 (1130)
-. .-..+ +.+| +...++.++. -+...++-+. ++. .+..+.+ ++..-|.++.|...+.++.+
T Consensus 255 ~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g-~~~eiVR~i~~~~~~~~l~T 333 (376)
T KOG1188|consen 255 VSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQG-GHEEIVRDILFDVKNDVLYT 333 (376)
T ss_pred chhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccC-CcHHHHHHHhhhcccceeec
Confidence 00 00001 1223 3344555443 5666665443 232 3333333 23446788888888999999
Q ss_pred EeCCCcEEEEEcCCC
Q 001184 650 TTADQGIKILANADG 664 (1130)
Q Consensus 650 ~~~dg~i~iw~~~~~ 664 (1130)
|+.||.+.+|..+..
T Consensus 334 GGEDG~l~~Wk~~da 348 (376)
T KOG1188|consen 334 GGEDGLLQAWKVEDA 348 (376)
T ss_pred cCCCceEEEEecCCc
Confidence 999999999986443
No 189
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.71 E-value=3.6e-16 Score=149.29 Aligned_cols=307 Identities=14% Similarity=0.172 Sum_probs=197.2
Q ss_pred eeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEE
Q 001184 534 RVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIK 613 (1130)
Q Consensus 534 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 613 (1130)
.+.+..+...++++.|-.+++ |.++.. .|.|.+|++.+.+....+.++....++.+..-|+ ..+.+-+.|..+.
T Consensus 7 ~fvLRp~~~~v~s~~fqa~~r-L~sg~~----~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~ 80 (323)
T KOG0322|consen 7 FFVLRPHSSSVTSVLFQANER-LMSGLS----VGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLI 80 (323)
T ss_pred eeEeccccchheehhhccchh-hhcccc----cceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEE
Confidence 344556777899999998887 555543 8999999999999888888777768888888876 6788999999999
Q ss_pred EEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCC-cEEEEEcCCCchhhhhhcccccccccccccccccccce
Q 001184 614 FWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQ-GIKILANADGLRALRAIETRAYETSRASTEMKVPGSAV 692 (1130)
Q Consensus 614 vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1130)
+|++..+..+..-.. .++++-|.+-. +...+... .+..++-+...+ ....++.. .
T Consensus 81 lw~ia~s~~i~i~Si-----~~nslgFCrfS--l~~~~k~~eqll~yp~rgsde-~h~~D~g~---------------~- 136 (323)
T KOG0322|consen 81 LWTIAYSAFISIHSI-----VVNSLGFCRFS--LVKKPKNSEQLLEYPSRGSDE-THKQDGGD---------------T- 136 (323)
T ss_pred EEEccCcceEEEeee-----eccccccccce--eccCCCcchhheecCCcccch-hhhhccCc---------------c-
Confidence 999988665544332 33444444321 11111110 111111111000 00000000 0
Q ss_pred eeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEE
Q 001184 693 VTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVAR 772 (1130)
Q Consensus 693 ~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 772 (1130)
-.+++-+-. ..+..+.+.+
T Consensus 137 ----------------------------------------------tqv~i~dd~---------------~~~Klgsvmc 155 (323)
T KOG0322|consen 137 ----------------------------------------------TQVQIADDS---------------ERSKLGSVMC 155 (323)
T ss_pred ----------------------------------------------ceeEccCch---------------hccccCceee
Confidence 000000000 0112222333
Q ss_pred EEEec-cCC--eEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEE
Q 001184 773 LLYTN-SGI--GILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVM 849 (1130)
Q Consensus 773 l~~s~-~g~--~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la 849 (1130)
..+.. ++. .+++|-++|.+.+||++.+....+.. ..|.... .. ..|..++.++.+.+.-..=+
T Consensus 156 ~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~-------~~~kv~~------~~-ash~qpvlsldyas~~~rGi 221 (323)
T KOG0322|consen 156 QDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLP-------QSSKVES------PN-ASHKQPVLSLDYASSCDRGI 221 (323)
T ss_pred eeccccccceEEEEEeccCCeEEEEEccCCceeeccc-------ccccccc------ch-hhccCcceeeeechhhcCCc
Confidence 33211 122 35566679999999988753221111 1111110 01 15889999999987655555
Q ss_pred EEe-CCeEEEEECCC--c--eeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEE
Q 001184 850 SAG-GGKVSLFNMMN--F--KVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLA 924 (1130)
Q Consensus 850 ~~~-dg~i~iwd~~~--~--~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~ 924 (1130)
+|+ +..+..|+++. + +...+.......|..+.+-| |++++|++++|+.||||..++..++..++.|++.|.+++
T Consensus 222 sgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vA 300 (323)
T KOG0322|consen 222 SGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVA 300 (323)
T ss_pred CCCccccceeeeeccccCcccccceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEE
Confidence 666 67788887753 2 22233344456788999999 999999999999999999999999999999999999999
Q ss_pred EccCCCeEEEEeCCCcEEEEEC
Q 001184 925 FSTNLNILVSSGSDAQLIFWNT 946 (1130)
Q Consensus 925 ~s~dg~~L~s~s~Dg~i~vwd~ 946 (1130)
|+||...+|.++.|+.|.+|++
T Consensus 301 fspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 301 FSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred eCCCCchhhhccCCceEEeeec
Confidence 9999999999999999999986
No 190
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.71 E-value=2.5e-14 Score=159.00 Aligned_cols=146 Identities=15% Similarity=0.173 Sum_probs=95.8
Q ss_pred EEEEecCCcEEEEEccCCcc---eeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCC-CCceeEEEecccCc
Q 001184 514 IFSTAVDGKIKAWLYDNVGS---RVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES-EGALKRTYIGFRKK 589 (1130)
Q Consensus 514 l~s~s~dg~i~vwd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~ 589 (1130)
.++...++.|.+|++.+... ...+. .......++++|++++|++++. .++.|.+|++. ++.....-......
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~---~~~~i~~~~~~~~g~l~~~~~~~~~~ 80 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVR---PEFRVLSYRIADDGALTFAAESPLPG 80 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEEC---CCCcEEEEEECCCCceEEeeeecCCC
Confidence 34447789999999974332 22232 3345778999999999988753 26789999886 34332111111122
Q ss_pred eeEEEEEcCCCCEEEEEeC-CCcEEEEeCCC-CceeEEEeccCCCCCcceEEEcCCCCEEEEEe-CCCcEEEEEcCC
Q 001184 590 SAGVVQFDTTRNRILAAGE-DNQIKFWDMDN-VNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTT-ADQGIKILANAD 663 (1130)
Q Consensus 590 ~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~-~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~-~dg~i~iw~~~~ 663 (1130)
....++++|+++++++++. ++.|.+|++++ +..........+......++++|+++++++++ .++.|.+|++.+
T Consensus 81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~ 157 (330)
T PRK11028 81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSD 157 (330)
T ss_pred CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECC
Confidence 4567999999999888764 88999999974 32211111111122457788999999886555 568999999865
No 191
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.71 E-value=1.1e-14 Score=161.87 Aligned_cols=196 Identities=11% Similarity=0.137 Sum_probs=128.5
Q ss_pred eEEEEecCCCEEEEEe--CCeEEEEECCC-c---eeEEEEeCCCCCeEEEEEeCCCCcEE-EEEeCCCcEEEEEeecCeE
Q 001184 837 PCVALSKNDSYVMSAG--GGKVSLFNMMN-F---KVMTTFMSPPPASTFLAFHPQDNNII-AIGMEDSTIQIYNVRVDEV 909 (1130)
Q Consensus 837 ~~l~~s~dg~~la~~~--dg~i~iwd~~~-~---~~~~~~~~~~~~i~~l~~sp~~~~~l-asg~~dg~v~iwd~~~~~~ 909 (1130)
..++++|+++++++++ ++.|.+|++.+ + +.+..+. +......++++| +++++ ++...++.|.+||+.+...
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~g~ 160 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDDGH 160 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCC-CCCEEEEeeCCCCEEEEEEECCCCc
Confidence 4577778888777765 57788887753 2 1222222 223467789999 66655 5555679999999986332
Q ss_pred EE-------EEecCCCCeeEEEEccCCCeEEEEeC-CCcEEEEECCCC--cccceeeEec-cCC-CCCCCeEEEEEcCCC
Q 001184 910 KT-------KLKGHQKHITGLAFSTNLNILVSSGS-DAQLIFWNTDTW--EKRKSIAIQL-PAG-KLPVGETRVQFHSDQ 977 (1130)
Q Consensus 910 ~~-------~l~~h~~~V~~l~~s~dg~~L~s~s~-Dg~i~vwd~~~~--~~~~~~~~~~-~~~-~~~~~v~~~~~s~d~ 977 (1130)
+. .... ......++|+|||++|+++.. +++|.+|+++.. +......... +.. ..+.....+.++|++
T Consensus 161 l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg 239 (330)
T PRK11028 161 LVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG 239 (330)
T ss_pred ccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC
Confidence 21 1111 233568999999999988876 899999999842 2211111111 111 111233468999999
Q ss_pred cEEEEE--cCCcEEEEECCCce----eeeeeecCCCCCCCeEEEEECCCCCEEEEEeC-CCcEEEEeCC
Q 001184 978 VRLLVN--HETQLAIYDGSKME----CIRQWVPQDVLSSPISSAAYSCNSQLIYATFT-DGSIGVFDAD 1039 (1130)
Q Consensus 978 ~~l~~~--~d~~i~v~d~~~~~----~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~-Dg~i~vwd~~ 1039 (1130)
++++++ .++.|.+|++.... .+..... ......++|+|||++|+++.. +++|.+|+++
T Consensus 240 ~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~----~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 240 RHLYACDRTASLISVFSVSEDGSVLSFEGHQPT----ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec----cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 999986 36889999986432 2232222 124557899999999998885 8999999874
No 192
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.71 E-value=6.6e-16 Score=149.25 Aligned_cols=228 Identities=16% Similarity=0.231 Sum_probs=172.6
Q ss_pred CCeEEEEECCCc--ee-EEEEeCCCCCeEEEEEeCCCCcEEEEEeCC-------CcEEEEEeecC---------eEEEEE
Q 001184 853 GGKVSLFNMMNF--KV-MTTFMSPPPASTFLAFHPQDNNIIAIGMED-------STIQIYNVRVD---------EVKTKL 913 (1130)
Q Consensus 853 dg~i~iwd~~~~--~~-~~~~~~~~~~i~~l~~sp~~~~~lasg~~d-------g~v~iwd~~~~---------~~~~~l 913 (1130)
++.|.+.++... .. .+.+..|.+.|..++-+|.+.++|++...+ ..+.||.+... +++..+
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L 118 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL 118 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence 577887776543 22 234667789999999999888899887663 13779988642 344455
Q ss_pred e-cCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcC--CCcEEEEEcCCcEEE
Q 001184 914 K-GHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHS--DQVRLLVNHETQLAI 990 (1130)
Q Consensus 914 ~-~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--d~~~l~~~~d~~i~v 990 (1130)
. .+-+.|.|+.|.|++..|++-. |..|.+|++..+...................++-+|+| ||..+++..|++++.
T Consensus 119 dteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~ 197 (370)
T KOG1007|consen 119 DTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQF 197 (370)
T ss_pred CHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEE
Confidence 4 5667999999999999999887 77899999998765322222222222335677788888 899999999999999
Q ss_pred EECCCceeeeeeecCCCCCCCeEEEEECCCCC-EEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEE
Q 001184 991 YDGSKMECIRQWVPQDVLSSPISSAAYSCNSQ-LIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVT 1069 (1130)
Q Consensus 991 ~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~-~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1130)
||+++.++...+.. +|...|..+.|.|+.+ +|++++.||.|++||.+.-+....-. ++|+-++-++.
T Consensus 198 ~D~RT~~~~~sI~d--AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el----------~~HsHWvW~VR 265 (370)
T KOG1007|consen 198 WDLRTMKKNNSIED--AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQEL----------PGHSHWVWAVR 265 (370)
T ss_pred EEccchhhhcchhh--hhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccccc----------CCCceEEEEEE
Confidence 99998887766653 4578899999999977 88899999999999988655432221 33444556788
Q ss_pred EcCCCCCEEEEEeCCCcEEEEeCC
Q 001184 1070 SHPQEPNQLAVGLTDGSVKVIEPS 1093 (1130)
Q Consensus 1070 ~~~~~~~~l~s~~~Dg~v~vW~~~ 1093 (1130)
|+|...++|++||.|..|.+|-..
T Consensus 266 fn~~hdqLiLs~~SDs~V~Lsca~ 289 (370)
T KOG1007|consen 266 FNPEHDQLILSGGSDSAVNLSCAS 289 (370)
T ss_pred ecCccceEEEecCCCceeEEEecc
Confidence 999888999999999999999875
No 193
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.69 E-value=3.5e-15 Score=146.78 Aligned_cols=404 Identities=12% Similarity=0.106 Sum_probs=235.5
Q ss_pred EEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEE-eCC
Q 001184 352 SMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVA-FTK 430 (1130)
Q Consensus 352 ~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~-~~d 430 (1130)
-+.|||+|++ +|+.+.- .+.|=|.++-+...-. ---..|..+.|+.|.-++..+ ..|
T Consensus 13 ~c~fSp~g~y-iAs~~~y-rlviRd~~tlq~~qlf--------------------~cldki~yieW~ads~~ilC~~yk~ 70 (447)
T KOG4497|consen 13 FCSFSPCGNY-IASLSRY-RLVIRDSETLQLHQLF--------------------LCLDKIVYIEWKADSCHILCVAYKD 70 (447)
T ss_pred ceeECCCCCe-eeeeeee-EEEEeccchhhHHHHH--------------------HHHHHhhheeeeccceeeeeeeecc
Confidence 4789999995 8887754 7888888876654310 012368889999998876654 678
Q ss_pred CeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEecCCCcCEEEEeecccCC
Q 001184 431 HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKEN 510 (1130)
Q Consensus 431 ~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~ 510 (1130)
+.|.+|++...+-.. .+....+++.+++|||||++ +|.+...|-.|.+|....+...-+.-....+..++|++ +
T Consensus 71 ~~vqvwsl~Qpew~c---kIdeg~agls~~~WSPdgrh-iL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~--d 144 (447)
T KOG4497|consen 71 PKVQVWSLVQPEWYC---KIDEGQAGLSSISWSPDGRH-ILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHP--D 144 (447)
T ss_pred ceEEEEEeecceeEE---EeccCCCcceeeeECCCcce-EeeeecceeEEEEEEeccceeEEecccccCceeEEECC--C
Confidence 899999998754322 46667788999999999987 78888899999999955554455554455667888865 5
Q ss_pred ccEEEEEecCCcEEEEEcc---CCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEeccc
Q 001184 511 IHFIFSTAVDGKIKAWLYD---NVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFR 587 (1130)
Q Consensus 511 ~~~l~s~s~dg~i~vwd~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~ 587 (1130)
|++.+..+.-......++. .-.....+.......+.+.|+|||+.|++- |.--.-.+..+ +.
T Consensus 145 g~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVw-------------d~~Leykv~aY--e~ 209 (447)
T KOG4497|consen 145 GQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVW-------------DNVLEYKVYAY--ER 209 (447)
T ss_pred CceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEe-------------cchhhheeeee--ee
Confidence 5676666543221111111 111122344445567889999999887764 32111111122 23
Q ss_pred CceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchh
Q 001184 588 KKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRA 667 (1130)
Q Consensus 588 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 667 (1130)
+-.+..+.|+|.+++++.|+.|+.+||.+--+-+.+..+-... .+. |.++.+..-+.. +.
T Consensus 210 ~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~---s~~----------------dp~~~~~~ke~~-~~ 269 (447)
T KOG4497|consen 210 GLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLC---SYH----------------DPTLHLLEKETF-SI 269 (447)
T ss_pred ccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccch---hcc----------------Cchhhhhhhhhc-ch
Confidence 3357789999999999999999999998766555443332110 111 111000000000 00
Q ss_pred hhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeec
Q 001184 668 LRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELT 747 (1130)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~ 747 (1130)
.. +..+-. +|.|..-.+.... ..-.+|+..
T Consensus 270 ~q-l~~~cL------------------sf~p~~~~a~~~~-------------------------------~se~~YE~~ 299 (447)
T KOG4497|consen 270 VQ-LLHHCL------------------SFTPTDLEAHIWE-------------------------------ESETIYEQQ 299 (447)
T ss_pred hh-hccccc------------------ccCCCccccCccc-------------------------------cchhhhhhh
Confidence 00 000000 0111000000000 000000000
Q ss_pred cccCCcceeEEE-ecCCCCCccceEEEEEeccCCeEEEeeeC--CeEEeeecCCCCCCCCcccccccccccccCCCCcce
Q 001184 748 EIVDPLQCRVVA-MPESTDSASKVARLLYTNSGIGILALWSN--GVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLM 824 (1130)
Q Consensus 748 ~~~~~~~~~~~~-~~~~~~~~~~i~~l~~s~~g~~l~~~~~d--g~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 824 (1130)
.. +....... ..+.+...-.+.-++|++|..++++-.+. +.+-+||+ +.-++.
T Consensus 300 ~~--pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdl----------------------q~l~l~ 355 (447)
T KOG4497|consen 300 MT--PVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDL----------------------QNLKLH 355 (447)
T ss_pred hc--ceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEec----------------------hhhhhh
Confidence 00 00000000 00012245567789999999998887764 45555554 333322
Q ss_pred eccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCC
Q 001184 825 TNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDS 897 (1130)
Q Consensus 825 ~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg 897 (1130)
... ....+|....|.|....|+.+. ...+++|......++..- ...-.|..++|.- +|..++..+.|.
T Consensus 356 avL---iQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP-~~GF~i~~l~W~~-~g~~i~l~~kDa 424 (447)
T KOG4497|consen 356 AVL---IQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVP-KKGFNIQKLQWLQ-PGEFIVLCGKDA 424 (447)
T ss_pred hhh---hhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecC-CCCceeeeEEecC-CCcEEEEEcCCc
Confidence 221 2477899999999998888876 566999999875555443 2346799999998 777887777774
No 194
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=1.4e-14 Score=136.73 Aligned_cols=280 Identities=16% Similarity=0.225 Sum_probs=191.2
Q ss_pred CEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEe
Q 001184 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAF 428 (1130)
Q Consensus 349 ~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~ 428 (1130)
.|.+-++||.++ +|+.|..+|.|.+..+++-..-... .....+.-...+|.++|+.++|. ..+|++|+
T Consensus 12 tvf~qa~sp~~~-~l~agn~~G~iav~sl~sl~s~sa~---------~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g 79 (325)
T KOG0649|consen 12 TVFAQAISPSKQ-YLFAGNLFGDIAVLSLKSLDSGSAE---------PPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG 79 (325)
T ss_pred HHHHHhhCCcce-EEEEecCCCeEEEEEehhhhccccC---------CCCCcceeeccccCCCeeeeeee--hhheeecc
Confidence 455668899998 5899999999999998642111000 00011111347999999999998 45777776
Q ss_pred CCCeEEEEEecCCcc---ceeee--eeecCC-----CCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCC
Q 001184 429 TKHLIHLYTYQGSND---LCQSL--EIDAHV-----GGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHE 497 (1130)
Q Consensus 429 ~d~~i~vwd~~~~~~---~~~~~--~~~~h~-----~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~ 497 (1130)
||.|+-|....... .+... ....|. ..|+++-..|... -++.++.|+.++-|| .+|+...+++||+
T Consensus 80 -dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G~i~r~~rGHt 156 (325)
T KOG0649|consen 80 -DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDGRIQREYRGHT 156 (325)
T ss_pred -CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC--cEEEecCCeEEEEEEecCCEEEEEEcCCc
Confidence 59999998754322 11100 112233 3588999998877 467777899999999 9999999999999
Q ss_pred cCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCC----------CccEEEEEEecCCCeEEEeeecCCCCc
Q 001184 498 APVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP----------GLWCTTMLYSADGSRLFSCGTSKEGDS 567 (1130)
Q Consensus 498 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~----------~~~v~~~~~s~~~~~l~~~~~~~~~~~ 567 (1130)
+.|.++.-.. ....+++|+.||++|+||.++.+....+... +.+|.+++ -+..++++++ ..
T Consensus 157 DYvH~vv~R~--~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGg-----Gp 227 (325)
T KOG0649|consen 157 DYVHSVVGRN--ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGG-----GP 227 (325)
T ss_pred ceeeeeeecc--cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecC-----CC
Confidence 9999997532 2247899999999999999998887755432 22455554 4566888876 67
Q ss_pred EEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCC-CCE
Q 001184 568 HLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKE-GNL 646 (1130)
Q Consensus 568 ~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~-~~~ 646 (1130)
.+.+|.++..++...+.-. . .+..+.|. .+.+++++..+.+.-|.+. |..........+ ..++..++.. -++
T Consensus 228 ~lslwhLrsse~t~vfpip-a-~v~~v~F~--~d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~--~c~s~s~~~~p~k~ 300 (325)
T KOG0649|consen 228 KLSLWHLRSSESTCVFPIP-A-RVHLVDFV--DDCVLIGGEGNHVQSYTLN-GVLQANIPVEST--ACYSASWQTSPIKF 300 (325)
T ss_pred ceeEEeccCCCceEEEecc-c-ceeEeeee--cceEEEeccccceeeeeec-cEEEEeccCCcc--ceeeecccCCceEE
Confidence 8999999999888887642 2 56667775 4578888888899999874 444444443332 3444444432 234
Q ss_pred EEEEeCCCcEEEE
Q 001184 647 LVVTTADQGIKIL 659 (1130)
Q Consensus 647 l~~~~~dg~i~iw 659 (1130)
+-.++..+.+.|+
T Consensus 301 ~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 301 ISIAGFSNKLHIL 313 (325)
T ss_pred EEecccceeeeee
Confidence 4455556666655
No 195
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=8e-15 Score=165.40 Aligned_cols=201 Identities=16% Similarity=0.207 Sum_probs=149.5
Q ss_pred EEecCCCEEEEEe-CCeEEEEECCCceeEEEEeC-CCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecC---eEEEEEe
Q 001184 840 ALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMS-PPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVD---EVKTKLK 914 (1130)
Q Consensus 840 ~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~---~~~~~l~ 914 (1130)
.|-....+|.+++ -..|+|||.....+...+.. ...-++++.-+-..|.++|.|..||.|++||.+.. ..+...+
T Consensus 1172 dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R 1251 (1387)
T KOG1517|consen 1172 DWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYR 1251 (1387)
T ss_pred ehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeec
Confidence 4444334444444 57799999988777777653 34457777665546799999999999999998743 4677888
Q ss_pred cCCCC--eeEEEEccCCC-eEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEE
Q 001184 915 GHQKH--ITGLAFSTNLN-ILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIY 991 (1130)
Q Consensus 915 ~h~~~--V~~l~~s~dg~-~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~ 991 (1130)
.|+.. |..+.+-+.|- .|++|+.||.|++||+............. .-...+..+++..+++...+|+++.+.|.||
T Consensus 1252 ~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~-~~~yGs~lTal~VH~hapiiAsGs~q~ikIy 1330 (1387)
T KOG1517|consen 1252 EHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVA-HWEYGSALTALTVHEHAPIIASGSAQLIKIY 1330 (1387)
T ss_pred ccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeee-ccccCccceeeeeccCCCeeeecCcceEEEE
Confidence 99988 99999988775 49999999999999999853222221111 1111235899999999999999877999999
Q ss_pred ECCCceeeeeeecCCC----CCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcc
Q 001184 992 DGSKMECIRQWVPQDV----LSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLR 1042 (1130)
Q Consensus 992 d~~~~~~~~~~~~~~~----~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~ 1042 (1130)
++. |+.+..+..... ....+.|++|.|-.-+||+|+.|.+|.||..++.+
T Consensus 1331 ~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1331 SLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred ecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 987 333333332211 14678999999999999999999999999887655
No 196
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.68 E-value=1.2e-13 Score=139.10 Aligned_cols=241 Identities=10% Similarity=0.117 Sum_probs=181.9
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCC
Q 001184 409 SISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSG 487 (1130)
Q Consensus 409 ~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~ 487 (1130)
...+..+.|..|...|..|+.|| -++|..+.-.... ........|--+-|+.. .+.+++...-+.+++.+ .++
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~---~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCF---SKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhh---cccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccC
Confidence 34577788999999999999999 6788876533211 11222234555556543 21333333334589999 666
Q ss_pred CeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCC---CccEEEEEEecCCCeEEEeeecCC
Q 001184 488 RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP---GLWCTTMLYSADGSRLFSCGTSKE 564 (1130)
Q Consensus 488 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~~~~ 564 (1130)
..+..+. ...+|.++.++. +.|+.+=. ..|.|||+++.+...++... ...+.++.+++.+.+++.-+. .
T Consensus 79 ~~ICe~~-fpt~IL~VrmNr----~RLvV~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s--~ 150 (391)
T KOG2110|consen 79 TTICEIF-FPTSILAVRMNR----KRLVVCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGS--T 150 (391)
T ss_pred ceEEEEe-cCCceEEEEEcc----ceEEEEEc-ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCC--C
Confidence 6676665 567788887753 34544443 44999999998877765443 345777777777889987653 3
Q ss_pred CCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCc-EEEEeCCCCceeEEEeccCCCCCcceEEEcCC
Q 001184 565 GDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQ-IKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKE 643 (1130)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~ 643 (1130)
..|.|++||..+-+.+..+..|.+ .+.+++|+++|.+||++++.|+ |||+.+.+|+.+..+........|.+++|+|+
T Consensus 151 t~GdV~l~d~~nl~~v~~I~aH~~-~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~d 229 (391)
T KOG2110|consen 151 TSGDVVLFDTINLQPVNTINAHKG-PLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPD 229 (391)
T ss_pred CCceEEEEEcccceeeeEEEecCC-ceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCC
Confidence 378999999999999999998766 8999999999999999999997 79999999999999887666667999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCC
Q 001184 644 GNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 644 ~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
+.+|++.+..++|.++.++..
T Consensus 230 s~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 230 SQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred CCeEEEecCCCeEEEEEeccc
Confidence 999999999999999998764
No 197
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.68 E-value=6.6e-15 Score=165.40 Aligned_cols=275 Identities=16% Similarity=0.244 Sum_probs=202.5
Q ss_pred CCCCCcccccCCcccceeeeccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeee
Q 001184 324 VPSQQATWSLDDLPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAA 403 (1130)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1130)
+++...+|+.++. ...-..+.-...|+|++|+|....++|.|+.+|.|.+||+..+........ ..
T Consensus 220 ~~~~~~vW~~~~p-~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~l-------------s~ 285 (555)
T KOG1587|consen 220 PDGVLLVWSLKNP-NTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGL-------------SA 285 (555)
T ss_pred CCceEEEEecCCC-CCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCccc-------------cc
Confidence 3346778888886 556666778899999999999988999999999999999988765311011 11
Q ss_pred eecCCCccEEEEEEcCCCC--EEEEEeCCCeEEEEEecCCccceeeeee--e-------cCCCCeeEEEEecCCCceEEE
Q 001184 404 IVKDSSISVSRVAWSPDGN--FIGVAFTKHLIHLYTYQGSNDLCQSLEI--D-------AHVGGVNDLAFSYPNKQLCIV 472 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~--~las~~~d~~i~vwd~~~~~~~~~~~~~--~-------~h~~~V~~i~~s~d~~~l~l~ 472 (1130)
....|..+|+.+.|-.+-. -+++++.||.|..|+++.-........+ . .-...+++++|.+.... .++
T Consensus 286 ~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~-~Fi 364 (555)
T KOG1587|consen 286 LEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN-HFI 364 (555)
T ss_pred ccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc-eEE
Confidence 3457999999999987644 4999999999999988643221110001 1 11236899999997776 799
Q ss_pred EEcCCCcEEEEe---cCCCe------eeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEcc-CCcceeeecCCCc
Q 001184 473 TCGDDKLIRVWD---LSGRK------LFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYD-NVGSRVDYDAPGL 542 (1130)
Q Consensus 473 s~s~d~~v~iwd---~~~~~------~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~-~~~~~~~~~~~~~ 542 (1130)
.|+++|.|.-=+ .+-.. +..+..|.++|.++.++|-.. ..+++++ |-++++|.-. .......+..+..
T Consensus 365 VGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~ 442 (555)
T KOG1587|consen 365 VGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPD 442 (555)
T ss_pred EEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccc
Confidence 999999988733 22222 345667899999999877554 3444544 9999999887 6666667777777
Q ss_pred cEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCc--eeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001184 543 WCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA--LKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN 619 (1130)
Q Consensus 543 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 619 (1130)
.+++++|||-.-.++++. +++|.|.+||+.... ++.+..-. ......+.|++.|+.+++|...|.+.+|++..
T Consensus 443 ~v~~vaWSptrpavF~~~---d~~G~l~iWDLl~~~~~Pv~s~~~~-~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 443 YVTDVAWSPTRPAVFATV---DGDGNLDIWDLLQDDEEPVLSQKVC-SPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred eeeeeEEcCcCceEEEEE---cCCCceehhhhhccccCCccccccc-ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 899999999887766665 459999999986533 33333332 33567788999999999999999999999864
No 198
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.67 E-value=1.7e-14 Score=139.81 Aligned_cols=288 Identities=14% Similarity=0.247 Sum_probs=205.4
Q ss_pred eeeccCCCCEEEEEEe--cCCCeEEEEEeC----cCeEEEEeC--CCCceeecccceeeeccccccceeeeeecCCCccE
Q 001184 341 ACTMHQGSSVVSMDFH--PFHHTLLVVGCG----DGEITLWDV--GLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISV 412 (1130)
Q Consensus 341 ~~~~~h~~~V~~v~fs--pdg~~llasg~~----dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 412 (1130)
+..+.-.-.+.++.|| |+.+..||.|+. .+.|.|-.+ ++++.+... --.|.-++
T Consensus 38 iy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a------------------~fd~~YP~ 99 (364)
T KOG0290|consen 38 IYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDA------------------NFDHPYPV 99 (364)
T ss_pred EEEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccC------------------CCCCCCCc
Confidence 4555666789999999 666667899874 245555544 344444321 13688899
Q ss_pred EEEEEcCCCC-----EEEEEeCCCeEEEEEecCCc-cceee-----eeeecCCCCeeEEEEecCCCceEEEEEcCCCcEE
Q 001184 413 SRVAWSPDGN-----FIGVAFTKHLIHLYTYQGSN-DLCQS-----LEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIR 481 (1130)
Q Consensus 413 ~~v~~spdg~-----~las~~~d~~i~vwd~~~~~-~~~~~-----~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~ 481 (1130)
+.+.|.||.+ +||+++ ..+|+|.+...+ .+... .+-..+.+++++..|+.-... ++.++|-|.+..
T Consensus 100 tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~-~igtSSiDTTCT 176 (364)
T KOG0290|consen 100 TKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPN-LIGTSSIDTTCT 176 (364)
T ss_pred cceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcc-eeEeecccCeEE
Confidence 9999999863 677664 369999987421 11111 112346678999999986665 799999999999
Q ss_pred EEe-cCC---CeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceee-ecCC--CccEEEEEEec-CC
Q 001184 482 VWD-LSG---RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVD-YDAP--GLWCTTMLYSA-DG 553 (1130)
Q Consensus 482 iwd-~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~-~~~~--~~~v~~~~~s~-~~ 553 (1130)
||| .+| .....+..|..+|..++|.. +.-+.+++.|.||.+|+||++..+.... ++.. ..+...++|++ |-
T Consensus 177 iWdie~~~~~~vkTQLIAHDKEV~DIaf~~-~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDp 255 (364)
T KOG0290|consen 177 IWDIETGVSGTVKTQLIAHDKEVYDIAFLK-GSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDP 255 (364)
T ss_pred EEEEeeccccceeeEEEecCcceeEEEecc-CccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCc
Confidence 999 554 34566789999999999976 4457899999999999999998765443 2222 34778888887 45
Q ss_pred CeEEEeeecCCCCcEEEEeeCCCC-ceeEEEecccCceeEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCce------eEE
Q 001184 554 SRLFSCGTSKEGDSHLVEWNESEG-ALKRTYIGFRKKSAGVVQFDTTR-NRILAAGEDNQIKFWDMDNVNM------LTS 625 (1130)
Q Consensus 554 ~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~------~~~ 625 (1130)
+++|+... ....|.+.|++.. ..+..+.+|.. .|+.++|.|.. ..|.++|+|..+.+||+...-. +..
T Consensus 256 nymATf~~---dS~~V~iLDiR~P~tpva~L~~H~a-~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPila 331 (364)
T KOG0290|consen 256 NYMATFAM---DSNKVVILDIRVPCTPVARLRNHQA-SVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILA 331 (364)
T ss_pred hHHhhhhc---CCceEEEEEecCCCcceehhhcCcc-cccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhh
Confidence 66776654 2677999999864 56778888766 89999999976 5899999999999999976322 112
Q ss_pred EeccCCCCCcceEEEcC-CCCEEEEEeCCCcEEE
Q 001184 626 TEAEGGLPSLPRLRFNK-EGNLLVVTTADQGIKI 658 (1130)
Q Consensus 626 ~~~~~~~~~i~~v~~s~-~~~~l~~~~~dg~i~i 658 (1130)
.. ....|+.+.|++ .+.+++.+.. +.+.+
T Consensus 332 y~---a~~EVNqi~Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 332 YT---AGGEVNQIQWSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred hh---ccceeeeeeecccCCCEEEEEec-CeeeE
Confidence 22 223689999996 5667776654 34444
No 199
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.67 E-value=3.4e-14 Score=142.95 Aligned_cols=242 Identities=11% Similarity=0.189 Sum_probs=188.8
Q ss_pred CCCceeEEEEecCCCEEEEEeCCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCC--CcEEEEEeecCeE
Q 001184 832 AEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMED--STIQIYNVRVDEV 909 (1130)
Q Consensus 832 ~~~~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~d--g~v~iwd~~~~~~ 909 (1130)
....+..+.|+.|...|..|+....++|+................|..+-|+. .++|..+.+ +.+++++++.+..
T Consensus 4 ~~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~ 80 (391)
T KOG2110|consen 4 KKPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTT 80 (391)
T ss_pred CCcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccCce
Confidence 34556777899999999999977788898877655433334445577777865 366655544 3599999998888
Q ss_pred EEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEE---EcCC
Q 001184 910 KTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV---NHET 986 (1130)
Q Consensus 910 ~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~---~~d~ 986 (1130)
+..+. ...+|.++.++ .++|+++=.+. |+|||++.-+..+...... .++.++.++.++..+.+++. ...|
T Consensus 81 ICe~~-fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~MklLhTI~t~~---~n~~gl~AlS~n~~n~ylAyp~s~t~G 153 (391)
T KOG2110|consen 81 ICEIF-FPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMKLLHTIETTP---PNPKGLCALSPNNANCYLAYPGSTTSG 153 (391)
T ss_pred EEEEe-cCCceEEEEEc--cceEEEEEccc-EEEEecccceeehhhhccC---CCccceEeeccCCCCceEEecCCCCCc
Confidence 87766 44679999996 45777776665 9999999966554432221 23356777788888889997 2478
Q ss_pred cEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCc-EEEEeCCCcccccccCCCcccccCCCCCceeee
Q 001184 987 QLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGS-IGVFDADSLRLRCRIAPSAYMSQASPNSQTVFP 1065 (1130)
Q Consensus 987 ~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1065 (1130)
.|.+||+.+.+.+..+..| .+++.+++|++||.+|||+++.|+ |||+.+.+|+.+..++...+ ....
T Consensus 154 dV~l~d~~nl~~v~~I~aH---~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~---------~~~I 221 (391)
T KOG2110|consen 154 DVVLFDTINLQPVNTINAH---KGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY---------PVSI 221 (391)
T ss_pred eEEEEEcccceeeeEEEec---CCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce---------eeEE
Confidence 9999999999999998876 899999999999999999999887 89999999999999985542 4556
Q ss_pred EEEEEcCCCCCEEEEEeCCCcEEEEeCCCCc
Q 001184 1066 LVVTSHPQEPNQLAVGLTDGSVKVIEPSETE 1096 (1130)
Q Consensus 1066 ~~~~~~~~~~~~l~s~~~Dg~v~vW~~~~~~ 1096 (1130)
.+++|+|+ ..+|++.|..++|++|++.+..
T Consensus 222 ySL~Fs~d-s~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 222 YSLSFSPD-SQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEEECCC-CCeEEEecCCCeEEEEEecccc
Confidence 78999994 7899999999999999998766
No 200
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=8.1e-15 Score=167.75 Aligned_cols=235 Identities=14% Similarity=0.127 Sum_probs=164.7
Q ss_pred cCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeCC---CeEEEEEecCCccce
Q 001184 369 DGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTK---HLIHLYTYQGSNDLC 445 (1130)
Q Consensus 369 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d---~~i~vwd~~~~~~~~ 445 (1130)
+..|.|||....... .+..|...+.+.+|||||++||.++.+ ..|++||+.+++...
T Consensus 183 ~~~i~i~d~dg~~~~--------------------~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~ 242 (429)
T PRK01742 183 PYEVRVADYDGFNQF--------------------IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV 242 (429)
T ss_pred eEEEEEECCCCCCce--------------------EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE
Confidence 468999998765432 355778889999999999999988654 379999998875322
Q ss_pred eeeeeecCCCCeeEEEEecCCCceEEEE-EcCCCcEEEE--ecCCCeeeEecCCCcCEEEEeecccCCccEEEEE-ecCC
Q 001184 446 QSLEIDAHVGGVNDLAFSYPNKQLCIVT-CGDDKLIRVW--DLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFST-AVDG 521 (1130)
Q Consensus 446 ~~~~~~~h~~~V~~i~~s~d~~~l~l~s-~s~d~~v~iw--d~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-s~dg 521 (1130)
...+.+| ...++|+|||+ .|+. .+.+|.+.|| |..+..+..+..+...+....|+| |+..|+.. ..+|
T Consensus 243 -l~~~~g~---~~~~~wSPDG~--~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSp--DG~~i~f~s~~~g 314 (429)
T PRK01742 243 -VASFRGH---NGAPAFSPDGS--RLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSP--DGQSILFTSDRSG 314 (429)
T ss_pred -EecCCCc---cCceeECCCCC--EEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECC--CCCEEEEEECCCC
Confidence 2233344 44689999999 4554 4568876666 555556677777777788888865 45655544 4678
Q ss_pred cEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCC
Q 001184 522 KIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRN 601 (1130)
Q Consensus 522 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 601 (1130)
...+|+++..........+.. ....|+|||++|+..+. ..+.+||+.+++........ ....+.|+|+|+
T Consensus 315 ~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~-----~~i~~~Dl~~g~~~~lt~~~---~~~~~~~sPdG~ 384 (429)
T PRK01742 315 SPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMING-----DNVVKQDLTSGSTEVLSSTF---LDESPSISPNGI 384 (429)
T ss_pred CceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcC-----CCEEEEECCCCCeEEecCCC---CCCCceECCCCC
Confidence 889998765433222222222 45789999999988763 34777999888765433222 234577999999
Q ss_pred EEEEEeCCCcEEEEeC--CCCceeEEEeccCCCCCcceEEEcCC
Q 001184 602 RILAAGEDNQIKFWDM--DNVNMLTSTEAEGGLPSLPRLRFNKE 643 (1130)
Q Consensus 602 ~l~~~~~dg~i~vwd~--~~~~~~~~~~~~~~~~~i~~v~~s~~ 643 (1130)
+|+.++.++.+.+|.+ .+|+.+..+..+.+ .+...+|+|-
T Consensus 385 ~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g--~~~~p~wsp~ 426 (429)
T PRK01742 385 MIIYSSTQGLGKVLQLVSADGRFKARLPGSDG--QVKFPAWSPY 426 (429)
T ss_pred EEEEEEcCCCceEEEEEECCCCceEEccCCCC--CCCCcccCCC
Confidence 9999999998888875 35777777764443 6788899884
No 201
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.65 E-value=4.5e-14 Score=158.77 Aligned_cols=250 Identities=16% Similarity=0.161 Sum_probs=182.2
Q ss_pred CCCccEEEEEEcC-CCCEEEEEeCCCeEEEEEecCCccc--e-eeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEE
Q 001184 407 DSSISVSRVAWSP-DGNFIGVAFTKHLIHLYTYQGSNDL--C-QSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRV 482 (1130)
Q Consensus 407 ~h~~~V~~v~~sp-dg~~las~~~d~~i~vwd~~~~~~~--~-~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~i 482 (1130)
.-...|+|+.|+| +..++|.|+.+|.|.+||+..+... . .......|..+++.+.|..+-...-+++++.||.|..
T Consensus 240 ~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~ 319 (555)
T KOG1587|consen 240 ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICS 319 (555)
T ss_pred ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEee
Confidence 3456899999999 6778888999999999999887652 1 1112356889999999987654335899999999999
Q ss_pred EecCCCe-------eeEec------CCCcCEEEEeecccCCccEEEEEecCCcEEEEEc---cCCc-----ceeeecCCC
Q 001184 483 WDLSGRK-------LFQFE------GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLY---DNVG-----SRVDYDAPG 541 (1130)
Q Consensus 483 wd~~~~~-------~~~~~------~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~---~~~~-----~~~~~~~~~ 541 (1130)
|+.+.-. ..... .-...++++.|.+... ..++.|+.+|.|.--+. +... ....+..|.
T Consensus 320 W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p-~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~ 398 (555)
T KOG1587|consen 320 WDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDP-NHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHI 398 (555)
T ss_pred eeccccccchhhcccccccccccccccccceeeEeeccCCC-ceEEEEcCCcEEEEEeccCCcccccccccccccccccC
Confidence 9832211 11111 1234678888876543 67889999999876332 2222 122556677
Q ss_pred ccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCC-CCceeEEEecccCceeEEEEEcCCCC-EEEEEeCCCcEEEEeCCC
Q 001184 542 LWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES-EGALKRTYIGFRKKSAGVVQFDTTRN-RILAAGEDNQIKFWDMDN 619 (1130)
Q Consensus 542 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~ 619 (1130)
++|+++.++|-+..++..+. |-.+++|... ...++..+..+.+ .+..++|||... .++++..||.|.+||+..
T Consensus 399 g~v~~v~~nPF~~k~fls~g----DW~vriWs~~~~~~Pl~~~~~~~~-~v~~vaWSptrpavF~~~d~~G~l~iWDLl~ 473 (555)
T KOG1587|consen 399 GPVYAVSRNPFYPKNFLSVG----DWTVRIWSEDVIASPLLSLDSSPD-YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQ 473 (555)
T ss_pred cceEeeecCCCccceeeeec----cceeEeccccCCCCcchhhhhccc-eeeeeEEcCcCceEEEEEcCCCceehhhhhc
Confidence 89999999998876665543 8899999987 5566666665444 699999999875 666778899999999976
Q ss_pred Cc--eeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 620 VN--MLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 620 ~~--~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
.. ++...... ....+.+.|+++|+.|++|...|.+.+|++...
T Consensus 474 ~~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 474 DDEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred cccCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 54 33333333 346778889999999999999999999998654
No 202
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=3e-14 Score=143.14 Aligned_cols=300 Identities=17% Similarity=0.190 Sum_probs=215.3
Q ss_pred eecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCC------CCceeEEEecccCceeEEEEEcCCCCEEEEEeCC
Q 001184 536 DYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES------EGALKRTYIGFRKKSAGVVQFDTTRNRILAAGED 609 (1130)
Q Consensus 536 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 609 (1130)
.+..|.+.|+++.|+.++++|++++. +..+.+|++. +.+++.....|+...|.|++|...+.++++|+.+
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGD----D~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~ 126 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGD----DMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERW 126 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCC----cceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCc
Confidence 34567888999999999999999986 8899999974 4567777777776789999999999999999999
Q ss_pred CcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccc
Q 001184 610 NQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPG 689 (1130)
Q Consensus 610 g~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (1130)
++|..-|+++.+.+..+......+.|+.+..+|..+.+++.+.++.|.+||..........
T Consensus 127 ~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~------------------- 187 (609)
T KOG4227|consen 127 GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISL------------------- 187 (609)
T ss_pred ceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCce-------------------
Confidence 9999999999999998887776678999999999999999999999999998654211100
Q ss_pred cceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccc
Q 001184 690 SAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASK 769 (1130)
Q Consensus 690 ~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 769 (1130)
+.|. .....
T Consensus 188 ------~~~A-----------------------------------------------------------------N~~~~ 196 (609)
T KOG4227|consen 188 ------VLPA-----------------------------------------------------------------NSGKN 196 (609)
T ss_pred ------eeec-----------------------------------------------------------------CCCcc
Confidence 0000 01223
Q ss_pred eEEEEEeccCCe-EEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEE
Q 001184 770 VARLLYTNSGIG-ILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYV 848 (1130)
Q Consensus 770 i~~l~~s~~g~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l 848 (1130)
...+.|.|.... |++....+-+-+||........ +......- ++ .....-.++.|+|.|..+
T Consensus 197 F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~------------~~~~~~~~----L~-~~~~~~M~~~~~~~G~Q~ 259 (609)
T KOG4227|consen 197 FYTAEFHPETPALILVNSETGGPNVFDRRMQARPV------------YQRSMFKG----LP-QENTEWMGSLWSPSGNQF 259 (609)
T ss_pred ceeeeecCCCceeEEeccccCCCCceeeccccchH------------Hhhhcccc----Cc-ccchhhhheeeCCCCCee
Confidence 344556665544 4445556777777754422110 00000000 00 112223567899999888
Q ss_pred EEEeCC-eEEEEECCCceeEEEEeCCC-------CCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecC-------------
Q 001184 849 MSAGGG-KVSLFNMMNFKVMTTFMSPP-------PASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVD------------- 907 (1130)
Q Consensus 849 a~~~dg-~i~iwd~~~~~~~~~~~~~~-------~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~------------- 907 (1130)
.+--.| .-.+||+.+.++...-..|. ..+.+++|.- + .-+++|+.+-.|++|.+...
T Consensus 260 msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~-D-~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~ 337 (609)
T KOG4227|consen 260 MSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFID-D-YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDE 337 (609)
T ss_pred hhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeec-c-eeeeccCcccceEEEecCCCccccCccccCcch
Confidence 776644 35677887755533222222 3477888885 4 44899999999999988521
Q ss_pred ----------eEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCC
Q 001184 908 ----------EVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDT 948 (1130)
Q Consensus 908 ----------~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~ 948 (1130)
+.+..|+||..-+..+.|+|...+|++.+-.+.+++|.--.
T Consensus 338 ~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~r 388 (609)
T KOG4227|consen 338 EEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDHR 388 (609)
T ss_pred hhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccccc
Confidence 23467899999999999999999999999999999997543
No 203
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=2e-14 Score=162.31 Aligned_cols=290 Identities=15% Similarity=0.178 Sum_probs=202.7
Q ss_pred CEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcC--CCCEEEE
Q 001184 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP--DGNFIGV 426 (1130)
Q Consensus 349 ~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--dg~~las 426 (1130)
....+.|+|-... ++++...-.|+|||.+.++....+. . -......|+.+.+-. |..+|.+
T Consensus 1066 ~pk~~~~hpf~p~-i~~ad~r~~i~vwd~e~~~~l~~F~-----n-----------~~~~~t~Vs~l~liNe~D~aLlLt 1128 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQ-IAAADDRERIRVWDWEKGRLLNGFD-----N-----------GAFPDTRVSDLELINEQDDALLLT 1128 (1387)
T ss_pred CCceeeecCCCce-eEEcCCcceEEEEecccCceecccc-----C-----------CCCCCCccceeeeecccchhheee
Confidence 4677889998874 7777666789999999998865311 1 112345788888876 5568999
Q ss_pred EeCCCeEEEEEecCC--ccce---eeeeeecC----CCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEec-C
Q 001184 427 AFTKHLIHLYTYQGS--NDLC---QSLEIDAH----VGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFE-G 495 (1130)
Q Consensus 427 ~~~d~~i~vwd~~~~--~~~~---~~~~~~~h----~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~-~ 495 (1130)
|+.||.|+||+--.. +..+ ....+.++ .+.=.-+.|-.... .|+++|+-..|+||| ....++..+. +
T Consensus 1129 as~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G--~Ll~tGd~r~IRIWDa~~E~~~~diP~~ 1206 (1387)
T KOG1517|consen 1129 ASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG--HLLVTGDVRSIRIWDAHKEQVVADIPYG 1206 (1387)
T ss_pred eccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCC--eEEecCCeeEEEEEecccceeEeecccC
Confidence 999999999975322 1111 11112222 11113356766666 567777789999999 5555555544 4
Q ss_pred CCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcc---eeeecCCCcc--EEEEEEecCCCe-EEEeeecCCCCcEE
Q 001184 496 HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGS---RVDYDAPGLW--CTTMLYSADGSR-LFSCGTSKEGDSHL 569 (1130)
Q Consensus 496 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~---~~~~~~~~~~--v~~~~~s~~~~~-l~~~~~~~~~~~~i 569 (1130)
....|+++.-.. ..|++++.|..||.|++||.+.... +.....|... |..+.+.+.|-. |++++. +|.|
T Consensus 1207 s~t~vTaLS~~~-~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~----~G~I 1281 (1387)
T KOG1517|consen 1207 SSTLVTALSADL-VHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQ----DGDI 1281 (1387)
T ss_pred CCccceeecccc-cCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeecc----CCeE
Confidence 556677776443 3478999999999999999886544 3345556655 999999887665 888876 9999
Q ss_pred EEeeCCCCceeE--EEeccc--CceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEecc-----CCCCCcceEEE
Q 001184 570 VEWNESEGALKR--TYIGFR--KKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAE-----GGLPSLPRLRF 640 (1130)
Q Consensus 570 ~~wd~~~~~~~~--~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-----~~~~~i~~v~~ 640 (1130)
++||++...... ....|. ++..+++..++....+++|+. +.|+||++... .+..+... ...+.+.|++|
T Consensus 1282 ~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~-~l~~~k~n~~F~~q~~gs~scL~F 1359 (1387)
T KOG1517|consen 1282 QLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGE-QLNIIKYNPGFMGQRIGSVSCLAF 1359 (1387)
T ss_pred EEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChh-hhcccccCcccccCcCCCcceeee
Confidence 999998743222 222222 335889999999999999998 99999998643 33332221 23346799999
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 641 NKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 641 s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
+|..-++|+|+.|.+|.||....+
T Consensus 1360 HP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1360 HPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred cchhHhhhhccCCceEEEeecCCc
Confidence 999999999999999999987654
No 204
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=2.6e-15 Score=154.02 Aligned_cols=200 Identities=22% Similarity=0.213 Sum_probs=155.6
Q ss_pred EEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeE
Q 001184 878 TFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAI 957 (1130)
Q Consensus 878 ~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~ 957 (1130)
.+++|+. ++..|++|+.||++|||+..+...+.....|.+.|.+|.|||||++|++.+.| ..+||+..++.......
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t- 224 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT- 224 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC-
Confidence 7799999 89999999999999999998888888888999999999999999999999999 89999999974322211
Q ss_pred eccCCCCCCCeEEEEEcCCC---c-EEEE--EcCCcEEEEECCCcee--eeeeecCCCCCCCeEEEEECCCCCEEEEEeC
Q 001184 958 QLPAGKLPVGETRVQFHSDQ---V-RLLV--NHETQLAIYDGSKMEC--IRQWVPQDVLSSPISSAAYSCNSQLIYATFT 1029 (1130)
Q Consensus 958 ~~~~~~~~~~v~~~~~s~d~---~-~l~~--~~d~~i~v~d~~~~~~--~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~ 1029 (1130)
+ ...+.....+.|+.|+ . ++++ ...+.++.|++..... +..+.........|++++.|+||+++|.|+.
T Consensus 225 --~-~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 225 --P-FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTM 301 (398)
T ss_pred --C-cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEecc
Confidence 1 2223556777888877 3 3333 2456677777653221 1111111111458999999999999999999
Q ss_pred CCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 001184 1030 DGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSE 1094 (1130)
Q Consensus 1030 Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~~ 1094 (1130)
||.|.|++..+.+...-+. +.|...++.+.|+|+ .+++++.+.|....|..++-
T Consensus 302 dGsVai~~~~~lq~~~~vk----------~aH~~~VT~ltF~Pd-sr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 302 DGSVAIYDAKSLQRLQYVK----------EAHLGFVTGLTFSPD-SRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CCcEEEEEeceeeeeEeeh----------hhheeeeeeEEEcCC-cCcccccccCCceeEEEEee
Confidence 9999999999888765554 568889999999994 77899999999999998876
No 205
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.65 E-value=6.4e-14 Score=161.05 Aligned_cols=256 Identities=13% Similarity=0.098 Sum_probs=181.6
Q ss_pred eecCCCccEEEEEEcCCC-CEEEEEeCCCeEEEEEecCC----ccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCC
Q 001184 404 IVKDSSISVSRVAWSPDG-NFIGVAFTKHLIHLYTYQGS----NDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK 478 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg-~~las~~~d~~i~vwd~~~~----~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~ 478 (1130)
.+..|+..|..++.+++. .++++||.||+|++||...- ...+...++.....++.++.+.+.+. .+|.++.||
T Consensus 1043 hL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG 1120 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDG 1120 (1431)
T ss_pred hhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCC
Confidence 367889999999988755 99999999999999998642 12233334444567899999999999 688889999
Q ss_pred cEEEEecCC---Ce-----eeEecC-CCcCEEEE-eecccCCccEEEEEecCCcEEEEEccCCcceeee--cCCCccEEE
Q 001184 479 LIRVWDLSG---RK-----LFQFEG-HEAPVYSV-CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDY--DAPGLWCTT 546 (1130)
Q Consensus 479 ~v~iwd~~~---~~-----~~~~~~-h~~~v~~~-~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~--~~~~~~v~~ 546 (1130)
.|++.+... +. ...... ..+.+.++ ++........++.+...+.|..||++.......+ ....+.|++
T Consensus 1121 ~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTS 1200 (1431)
T KOG1240|consen 1121 SVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTS 1200 (1431)
T ss_pred eEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeE
Confidence 999998322 11 111111 22334443 3433333347888999999999999887766543 345567999
Q ss_pred EEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCC---CEEEEEe--CCCcEEEEeCCCCc
Q 001184 547 MLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTR---NRILAAG--EDNQIKFWDMDNVN 621 (1130)
Q Consensus 547 ~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~--~dg~i~vwd~~~~~ 621 (1130)
++.+|.+.+++.|+. .|.+.+||++-+.++..........+..++.+|-. ...++++ ..+.|.+|++.+|.
T Consensus 1201 i~idp~~~WlviGts----~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1201 IVIDPWCNWLVIGTS----RGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred EEecCCceEEEEecC----CceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence 999999999999986 89999999999888887765555567766666543 3444444 57889999999997
Q ss_pred eeEEEeccCCCC-----------------CcceEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 001184 622 MLTSTEAEGGLP-----------------SLPRLRFNKEGNLLVVTTADQGIKILANADGL 665 (1130)
Q Consensus 622 ~~~~~~~~~~~~-----------------~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~ 665 (1130)
+...+....... ....+.+...+..+.+|+.|..|+.||.....
T Consensus 1277 ~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1277 RQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred ceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcc
Confidence 766654431110 11223333345688999999999999987663
No 206
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.65 E-value=2.2e-12 Score=147.16 Aligned_cols=151 Identities=20% Similarity=0.283 Sum_probs=126.1
Q ss_pred EEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeCCCe
Q 001184 353 MDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHL 432 (1130)
Q Consensus 353 v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~~ 432 (1130)
+.++++.= .+++|+.-+.|.+|+....+.- ..+.||++.|.++.||-||+++++.|.|.+
T Consensus 139 ~g~s~~~~-~i~~gsv~~~iivW~~~~dn~p-------------------~~l~GHeG~iF~i~~s~dg~~i~s~SdDRs 198 (967)
T KOG0974|consen 139 IGDSAEEL-YIASGSVFGEIIVWKPHEDNKP-------------------IRLKGHEGSIFSIVTSLDGRYIASVSDDRS 198 (967)
T ss_pred EeccCcEE-EEEeccccccEEEEeccccCCc-------------------ceecccCCceEEEEEccCCcEEEEEecCcc
Confidence 34566654 4899999999999998722111 037899999999999999999999999999
Q ss_pred EEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEecCCCc-CEEEEeecccCCc
Q 001184 433 IHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEA-PVYSVCPHQKENI 511 (1130)
Q Consensus 433 i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~~h~~-~v~~~~~~~~~~~ 511 (1130)
+++|++++++... ...-+|+++|+.+.|.|. .++|++.|.+.++|+..+..+..+.+|.+ .++.++..+ +.
T Consensus 199 iRlW~i~s~~~~~--~~~fgHsaRvw~~~~~~n----~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~--~~ 270 (967)
T KOG0974|consen 199 IRLWPIDSREVLG--CTGFGHSARVWACCFLPN----RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPI--GV 270 (967)
T ss_pred eeeeecccccccC--cccccccceeEEEEeccc----eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcC--Cc
Confidence 9999999988665 246789999999999998 48999999999999988888889988875 578887744 44
Q ss_pred cEEEEEecCCcEEEEEccCC
Q 001184 512 HFIFSTAVDGKIKAWLYDNV 531 (1130)
Q Consensus 512 ~~l~s~s~dg~i~vwd~~~~ 531 (1130)
..++|++.|+.+++|++...
T Consensus 271 ~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 271 IIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred eEEEeeccCcchhhhhhhcc
Confidence 78999999999999987653
No 207
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.65 E-value=1.5e-14 Score=140.19 Aligned_cols=250 Identities=15% Similarity=0.255 Sum_probs=179.3
Q ss_pred ccCCCCEEEEEEecCCC----eEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcC
Q 001184 344 MHQGSSVVSMDFHPFHH----TLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP 419 (1130)
Q Consensus 344 ~~h~~~V~~v~fspdg~----~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp 419 (1130)
+.|..+++.+.|.|+.+ .+||+.+ ..+|||.+...+...... ..+....-..+.+++++..|+.
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~----------~~L~~~kns~~~aPlTSFDWne 160 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQ----------SVLNNNKNSEFCAPLTSFDWNE 160 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehh----------hhhccCcccccCCccccccccc
Confidence 67999999999999873 3677764 389999997432111000 0011112345678999999997
Q ss_pred -CCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCC----eeeEec
Q 001184 420 -DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGR----KLFQFE 494 (1130)
Q Consensus 420 -dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~----~~~~~~ 494 (1130)
|-++|.+++-|-++.|||+++|........+-.|...|.+|+|...+.. ++++.|.||.||++|+... .+++-.
T Consensus 161 ~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~-~FASvgaDGSvRmFDLR~leHSTIIYE~p 239 (364)
T KOG0290|consen 161 VDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRD-VFASVGADGSVRMFDLRSLEHSTIIYEDP 239 (364)
T ss_pred CCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccc-eEEEecCCCcEEEEEecccccceEEecCC
Confidence 7889999999999999999998543333457899999999999998877 8999999999999993222 222222
Q ss_pred CCCcCEEEEeecccCCccEEEEEecC-CcEEEEEccCCcc-eeeecCCCccEEEEEEecC-CCeEEEeeecCCCCcEEEE
Q 001184 495 GHEAPVYSVCPHQKENIHFIFSTAVD-GKIKAWLYDNVGS-RVDYDAPGLWCTTMLYSAD-GSRLFSCGTSKEGDSHLVE 571 (1130)
Q Consensus 495 ~h~~~v~~~~~~~~~~~~~l~s~s~d-g~i~vwd~~~~~~-~~~~~~~~~~v~~~~~s~~-~~~l~~~~~~~~~~~~i~~ 571 (1130)
....+...++|+. .|-+++++-..| ..|.+-|++.... ...+..|...|+.++|.|. ...|.++|. |.++.+
T Consensus 240 ~~~~pLlRLswnk-qDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGD----D~qali 314 (364)
T KOG0290|consen 240 SPSTPLLRLSWNK-QDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGD----DCQALI 314 (364)
T ss_pred CCCCcceeeccCc-CCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCC----cceEEE
Confidence 3356788888875 344677777665 4688999987655 4588899999999999995 456777774 889999
Q ss_pred eeCCCCc------eeEEEecccCceeEEEEEcCCC-CEEEEEeCCCcEEE
Q 001184 572 WNESEGA------LKRTYIGFRKKSAGVVQFDTTR-NRILAAGEDNQIKF 614 (1130)
Q Consensus 572 wd~~~~~------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~v 614 (1130)
||+.+.- ++..+. .++.|..+.|++.. ..++.+. ++++.+
T Consensus 315 WDl~q~~~~~~~dPilay~--a~~EVNqi~Ws~~~~Dwiai~~-~kklei 361 (364)
T KOG0290|consen 315 WDLQQMPRENGEDPILAYT--AGGEVNQIQWSSSQPDWIAICF-GKKLEI 361 (364)
T ss_pred EecccccccCCCCchhhhh--ccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence 9986532 222333 23478889999654 4555554 344444
No 208
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.64 E-value=2e-14 Score=141.65 Aligned_cols=237 Identities=16% Similarity=0.163 Sum_probs=179.7
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 425 (1130)
-..+|+|.||++|+. .+|++.....|.||.......- ...+++..|...|++|.|+|..+.|+
T Consensus 9 ~~~pitchAwn~drt-~iAv~~~~~evhiy~~~~~~~w----------------~~~htls~Hd~~vtgvdWap~snrIv 71 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRT-QIAVSPNNHEVHIYSMLGADLW----------------EPAHTLSEHDKIVTGVDWAPKSNRIV 71 (361)
T ss_pred ccCceeeeeecCCCc-eEEeccCCceEEEEEecCCCCc----------------eeceehhhhCcceeEEeecCCCCcee
Confidence 357899999999998 5899999999999998766521 12347889999999999999999999
Q ss_pred EEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCee-----eEecCCCcCE
Q 001184 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKL-----FQFEGHEAPV 500 (1130)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~-----~~~~~h~~~v 500 (1130)
+|+.|..-+||....+..-++...+..|+..++++.|+|.+. .+++||.-+.|.||-.+++.- +.-+.+...|
T Consensus 72 tcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en--kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv 149 (361)
T KOG1523|consen 72 TCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN--KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTV 149 (361)
T ss_pred EccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCc--eEEeccCccEEEEEEEecccceehhhhhCCccccce
Confidence 999999999999966666667777888999999999999999 799999999999988333321 1234577889
Q ss_pred EEEeecccCCccEEEEEecCCcEEEEEc-----cCC-------------cceeeecCCCccEEEEEEecCCCeEEEeeec
Q 001184 501 YSVCPHQKENIHFIFSTAVDGKIKAWLY-----DNV-------------GSRVDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1130)
Q Consensus 501 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~-----~~~-------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1130)
.+++|++.+ -+|++|+.|+..+++.. +.. +...++....+++..+.|+|+|..|+..+.
T Consensus 150 ~sldWhpnn--VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~H- 226 (361)
T KOG1523|consen 150 TSLDWHPNN--VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGH- 226 (361)
T ss_pred eeeeccCCc--ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecC-
Confidence 999998754 78999999999999953 221 112234456678999999999999999986
Q ss_pred CCCCcEEEEeeCCCCc-eeEEEecccCceeEEEEEcCCCCEEEEEeCC
Q 001184 563 KEGDSHLVEWNESEGA-LKRTYIGFRKKSAGVVQFDTTRNRILAAGED 609 (1130)
Q Consensus 563 ~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 609 (1130)
+..+.+-|..... .+....... .+..++.|-.+ +.++.++.|
T Consensus 227 ---ds~v~~~da~~p~~~v~~~~~~~-lP~ls~~~ise-~~vv~ag~~ 269 (361)
T KOG1523|consen 227 ---DSTVSFVDAAGPSERVQSVATAQ-LPLLSVSWISE-NSVVAAGYD 269 (361)
T ss_pred ---CCceEEeecCCCchhccchhhcc-CCceeeEeecC-CceeecCCC
Confidence 8889888876553 233332222 35555555543 345555544
No 209
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.64 E-value=2.9e-11 Score=125.38 Aligned_cols=424 Identities=14% Similarity=0.142 Sum_probs=241.5
Q ss_pred EEEEEEecC--CCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEE
Q 001184 350 VVSMDFHPF--HHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVA 427 (1130)
Q Consensus 350 V~~v~fspd--g~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~ 427 (1130)
....-..|| |.+++++++.| +-.+++.+|+..+ +..|-+.|+.-.|+|||+.+|..
T Consensus 39 M~n~~l~PDI~GD~IiFt~~Dd--lWe~slk~g~~~r--------------------itS~lGVvnn~kf~pdGrkvaf~ 96 (668)
T COG4946 39 MKNYYLNPDIYGDRIIFTCCDD--LWEYSLKDGKPLR--------------------ITSGLGVVNNPKFSPDGRKVAFS 96 (668)
T ss_pred hhhhhcCCcccCcEEEEEechH--HHHhhhccCCeeE--------------------EecccceeccccCCCCCcEEEEE
Confidence 333344555 56678888764 3344555665543 55778889999999999999872
Q ss_pred -------eCCCeEEEEEecCCccceeeeeeecCCCCeeEE-EEecCCCceEEEEEcCCCcEE----EEe--cCCCeeeEe
Q 001184 428 -------FTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDL-AFSYPNKQLCIVTCGDDKLIR----VWD--LSGRKLFQF 493 (1130)
Q Consensus 428 -------~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i-~~s~d~~~l~l~s~s~d~~v~----iwd--~~~~~~~~~ 493 (1130)
...+.+.+.+.+.|+..+ . ++-| ...+.+ -|.|||+ ++++...-.-.. +|. .+|.....+
T Consensus 97 rv~~~ss~~taDly~v~~e~Ge~kR-i-TyfG--r~fT~VaG~~~dg~--iiV~TD~~tPF~q~~~lYkv~~dg~~~e~L 170 (668)
T COG4946 97 RVMLGSSLQTADLYVVPSEDGEAKR-I-TYFG--RRFTRVAGWIPDGE--IIVSTDFHTPFSQWTELYKVNVDGIKTEPL 170 (668)
T ss_pred EEEecCCCccccEEEEeCCCCcEEE-E-EEec--cccceeeccCCCCC--EEEEeccCCCcccceeeeEEccCCceeeec
Confidence 233457888888887443 2 2333 334444 5999999 777765433222 222 222222222
Q ss_pred cCCCcCEEEEeecccCCccEEEEEecC-----------C-cEEEEEccCCc-ceeeecCCCccEEEEEEecCCCeEEEee
Q 001184 494 EGHEAPVYSVCPHQKENIHFIFSTAVD-----------G-KIKAWLYDNVG-SRVDYDAPGLWCTTMLYSADGSRLFSCG 560 (1130)
Q Consensus 494 ~~h~~~v~~~~~~~~~~~~~l~s~s~d-----------g-~i~vwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 560 (1130)
.-++.+.+.+ .|| .++.|-.- | +=++|--..+. ....+..-...|.+-..-.+.-++++
T Consensus 171 --nlGpathiv~---~dg-~ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~PmIV~~RvYFls-- 242 (668)
T COG4946 171 --NLGPATHIVI---KDG-IIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPMIVGERVYFLS-- 242 (668)
T ss_pred --cCCceeeEEE---eCC-EEEEccCcccCcccccccCCccceEEEEecCCcceeeeeecCCCcCCceEEcceEEEEe--
Confidence 2234444433 222 33333111 0 11334322222 11111111112222222222223333
Q ss_pred ecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEec---c--CCC---
Q 001184 561 TSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEA---E--GGL--- 632 (1130)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---~--~~~--- 632 (1130)
+.++-|.|+--|+....+ +.....+ ...+-..+.||++++.. ..|.|++||..+.+....--. . ...
T Consensus 243 -D~eG~GnlYSvdldGkDl-rrHTnFt--dYY~R~~nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~ 317 (668)
T COG4946 243 -DHEGVGNLYSVDLDGKDL-RRHTNFT--DYYPRNANSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKF 317 (668)
T ss_pred -cccCccceEEeccCCchh-hhcCCch--hccccccCCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccc
Confidence 456678888888764333 3322222 23444567788887764 458899999887654332111 0 000
Q ss_pred -CCcceEE-EcC-CCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCC
Q 001184 633 -PSLPRLR-FNK-EGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRS 709 (1130)
Q Consensus 633 -~~i~~v~-~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~ 709 (1130)
.+..-+. |++ +|.+++..+.. ...|.+...+..
T Consensus 318 ~~pskyledfa~~~Gd~ia~VSRG-kaFi~~~~~~~~------------------------------------------- 353 (668)
T COG4946 318 VNPSKYLEDFAVVNGDYIALVSRG-KAFIMRPWDGYS------------------------------------------- 353 (668)
T ss_pred cCHHHhhhhhccCCCcEEEEEecC-cEEEECCCCCee-------------------------------------------
Confidence 0011111 333 46666666543 333433222200
Q ss_pred CCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCC
Q 001184 710 SPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNG 789 (1130)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg 789 (1130)
+. -++.+.|.-..+.-++..++.+..||
T Consensus 354 ------------------------------------------------iq----v~~~~~VrY~r~~~~~e~~vigt~dg 381 (668)
T COG4946 354 ------------------------------------------------IQ----VGKKGGVRYRRIQVDPEGDVIGTNDG 381 (668)
T ss_pred ------------------------------------------------EE----cCCCCceEEEEEccCCcceEEeccCC
Confidence 00 11333444445555666677888877
Q ss_pred -eEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEeC-CeEEEEECCCceeE
Q 001184 790 -VQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGG-GKVSLFNMMNFKVM 867 (1130)
Q Consensus 790 -~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~d-g~i~iwd~~~~~~~ 867 (1130)
.+-+++... ++.... +..-+.|.++..++||++++++.| ..|.+.|+.++...
T Consensus 382 D~l~iyd~~~----------------------~e~kr~---e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~ 436 (668)
T COG4946 382 DKLGIYDKDG----------------------GEVKRI---EKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVR 436 (668)
T ss_pred ceEEEEecCC----------------------ceEEEe---eCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCee
Confidence 777776543 222111 135678999999999999999984 78999999999887
Q ss_pred EEEeCCCCCeEEEEEeCCCCcEEEEEeCCC----cEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeC
Q 001184 868 TTFMSPPPASTFLAFHPQDNNIIAIGMEDS----TIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGS 937 (1130)
Q Consensus 868 ~~~~~~~~~i~~l~~sp~~~~~lasg~~dg----~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~ 937 (1130)
..-+...+-|+.++|+| +++++|.+--+| .|++||+.+++...... ..+.=.+-+|.||+++|.--+.
T Consensus 437 ~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 437 LIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred EecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeEEEecC-CcccccCcccCCCCcEEEEEec
Confidence 66666778899999999 999999988776 58999999988655433 2333456789999998886654
No 210
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.64 E-value=6.4e-16 Score=169.69 Aligned_cols=290 Identities=17% Similarity=0.259 Sum_probs=222.5
Q ss_pred CceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcE
Q 001184 577 GALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGI 656 (1130)
Q Consensus 577 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i 656 (1130)
.+.++.+.+|.. .|.|+.|...|.++++|++|..++||.++++.++....+|.+ .|+.++.+.+..++++++.|..|
T Consensus 180 mk~ikrLlgH~n-aVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~--ditdlavs~~n~~iaaaS~D~vI 256 (1113)
T KOG0644|consen 180 MKNIKRLLGHRN-AVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSG--DITDLAVSSNNTMIAAASNDKVI 256 (1113)
T ss_pred HHHHHHHHhhhh-heeeeeeccccceEeecCccceeeeeeccchhhhccCCCCcc--ccchhccchhhhhhhhcccCceE
Confidence 344556777766 799999999999999999999999999999999999887765 89999999999999999999999
Q ss_pred EEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccc
Q 001184 657 KILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLED 736 (1130)
Q Consensus 657 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (1130)
++|.+.++ ..+..+.+|+..+.. .+|+|- .+.+
T Consensus 257 rvWrl~~~-~pvsvLrghtgavta-------------iafsP~---------------------------------~sss 289 (1113)
T KOG0644|consen 257 RVWRLPDG-APVSVLRGHTGAVTA-------------IAFSPR---------------------------------ASSS 289 (1113)
T ss_pred EEEecCCC-chHHHHhccccceee-------------eccCcc---------------------------------ccCC
Confidence 99999998 788888888766553 256665 3566
Q ss_pred cCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccc
Q 001184 737 ISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHW 816 (1130)
Q Consensus 737 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w 816 (1130)
.||++++|+..-.. .....-|........+.++.|...+....+++.++.-..|.+..-. |
T Consensus 290 ~dgt~~~wd~r~~~----~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~---------------~ 350 (1113)
T KOG0644|consen 290 DDGTCRIWDARLEP----RIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLA---------------W 350 (1113)
T ss_pred CCCceEeccccccc----cccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhh---------------h
Confidence 78999999987110 0111111112234667788889999999999999888777643311 1
Q ss_pred cCCCCcceeccCCCCCCCceeEEEEecCCC-EEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEe
Q 001184 817 QPSNGLLMTNDVPENAEDVVPCVALSKNDS-YVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGM 894 (1130)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~-~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~ 894 (1130)
+...+.-+..+.|-. +.+++- +-.+.+|++.+|.....+.+|...+..+.++|.+..+..+++
T Consensus 351 ---------------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag 415 (1113)
T KOG0644|consen 351 ---------------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAG 415 (1113)
T ss_pred ---------------hccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhcc
Confidence 122222222222322 333333 677999999999999999999999999999998888888999
Q ss_pred CCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCc
Q 001184 895 EDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWE 950 (1130)
Q Consensus 895 ~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~ 950 (1130)
.||...|||+-.|..++...-..+.+..-+||+||..++....-|.++|.....++
T Consensus 416 ~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 416 YDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred CCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 99999999999987776644334667788999999999998888999988765544
No 211
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.63 E-value=7.3e-13 Score=145.82 Aligned_cols=334 Identities=15% Similarity=0.166 Sum_probs=206.7
Q ss_pred ceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEE
Q 001184 468 QLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTT 546 (1130)
Q Consensus 468 ~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 546 (1130)
.+++++-..++.|.+.| .+.+.+.++......-..+.+ ++|+++++.++.||.|.++|+.+.+...++.... ...+
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~--s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~ 82 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKF--SPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRG 82 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE---TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEe--cCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-Ccce
Confidence 34667788899999999 888899998865444344555 5677899999999999999999998777776544 4688
Q ss_pred EEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEeccc------CceeEEEEEcCCCCEEEEE-eCCCcEEEEeCCC
Q 001184 547 MLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFR------KKSAGVVQFDTTRNRILAA-GEDNQIKFWDMDN 619 (1130)
Q Consensus 547 ~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~ 619 (1130)
+++++||++++++.. ..+.+.++|.++.+.++.+.... ...+..+..++....++.. -+.+.|.+.|...
T Consensus 83 i~~s~DG~~~~v~n~---~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 83 IAVSPDGKYVYVANY---EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp EEE--TTTEEEEEEE---ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred EEEcCCCCEEEEEec---CCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 999999999998864 27899999999999998876432 2245667778888755554 4558888889877
Q ss_pred CceeEEEeccCCCCCcceEEEcCCCCEEEEE-eCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeecccc
Q 001184 620 VNMLTSTEAEGGLPSLPRLRFNKEGNLLVVT-TADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITP 698 (1130)
Q Consensus 620 ~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 698 (1130)
.+.+........ .......|+|++++++++ ..++.+.++|..++.. ...+..
T Consensus 160 ~~~~~~~~i~~g-~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~-v~~i~~------------------------- 212 (369)
T PF02239_consen 160 PKNLKVTTIKVG-RFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL-VALIDT------------------------- 212 (369)
T ss_dssp SSCEEEEEEE---TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE-EEEEE--------------------------
T ss_pred ccccceeeeccc-ccccccccCcccceeeecccccceeEEEeeccceE-EEEeec-------------------------
Confidence 654433222221 146789999999987665 4567888888766521 110000
Q ss_pred ccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEecc
Q 001184 699 VLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNS 778 (1130)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~ 778 (1130)
.. ..|..+...+ .+|.
T Consensus 213 ------------------------------------------------g~---------------~p~~~~~~~~-php~ 228 (369)
T PF02239_consen 213 ------------------------------------------------GK---------------KPHPGPGANF-PHPG 228 (369)
T ss_dssp ------------------------------------------------SS---------------SBEETTEEEE-EETT
T ss_pred ------------------------------------------------cc---------------cccccccccc-cCCC
Confidence 00 0011111110 0000
Q ss_pred CCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEE-EEEeCCeEE
Q 001184 779 GIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYV-MSAGGGKVS 857 (1130)
Q Consensus 779 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l-a~~~dg~i~ 857 (1130)
.++++ +.+..+... ...+.+.+.
T Consensus 229 ------------------------------------------------------~g~vw--~~~~~~~~~~~~ig~~~v~ 252 (369)
T PF02239_consen 229 ------------------------------------------------------FGPVW--ATSGLGYFAIPLIGTDPVS 252 (369)
T ss_dssp ------------------------------------------------------TEEEE--EEEBSSSSEEEEEE--TTT
T ss_pred ------------------------------------------------------cceEE--eeccccceecccccCCccc
Confidence 11111 112223333 222345666
Q ss_pred EEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEE----eCCCcEEEEEeecCeEEEEEecCC-CCeeEEEEccCCCeE
Q 001184 858 LFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIG----MEDSTIQIYNVRVDEVKTKLKGHQ-KHITGLAFSTNLNIL 932 (1130)
Q Consensus 858 iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg----~~dg~v~iwd~~~~~~~~~l~~h~-~~V~~l~~s~dg~~L 932 (1130)
+||..+++.++++...... ..+..+| +++++.+. ...++|.++|.++.+.+.++.... ..+..+.|++||+++
T Consensus 253 v~d~~~wkvv~~I~~~G~g-lFi~thP-~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v 330 (369)
T PF02239_consen 253 VHDDYAWKVVKTIPTQGGG-LFIKTHP-DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEV 330 (369)
T ss_dssp -STTTBTSEEEEEE-SSSS---EE--T-T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEE
T ss_pred cchhhcCeEEEEEECCCCc-ceeecCC-CCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEE
Confidence 8999999999999987666 8888999 78888877 455899999999998888875333 358999999999976
Q ss_pred EEEeCC--CcEEEEECCCCcccceee
Q 001184 933 VSSGSD--AQLIFWNTDTWEKRKSIA 956 (1130)
Q Consensus 933 ~s~s~D--g~i~vwd~~~~~~~~~~~ 956 (1130)
..+..+ +.|.+||..+.+......
T Consensus 331 ~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 331 WVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp EEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred EEEEecCCCEEEEEECCCcEEEEEEE
Confidence 655544 369999999977655544
No 212
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.62 E-value=9.4e-13 Score=144.95 Aligned_cols=321 Identities=11% Similarity=0.096 Sum_probs=200.9
Q ss_pred cEE-EEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCce
Q 001184 512 HFI-FSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKS 590 (1130)
Q Consensus 512 ~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~ 590 (1130)
+++ ++-..++.|.+.|..+.+....+......-..+.|+|||+++++++. ++.|.++|+.+++.++++... ..
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r----dg~vsviD~~~~~~v~~i~~G--~~ 79 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR----DGTVSVIDLATGKVVATIKVG--GN 79 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET----TSEEEEEETTSSSEEEEEE-S--SE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC----CCeEEEEECCcccEEEEEecC--CC
Confidence 344 55667899999999998888888766555556789999999999875 789999999999999998753 35
Q ss_pred eEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCceeEEEeccCC-----CCCcceEEEcCCCCEEEEEeC-CCcEEEEEcCC
Q 001184 591 AGVVQFDTTRNRILAAG-EDNQIKFWDMDNVNMLTSTEAEGG-----LPSLPRLRFNKEGNLLVVTTA-DQGIKILANAD 663 (1130)
Q Consensus 591 v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~-----~~~i~~v~~s~~~~~l~~~~~-dg~i~iw~~~~ 663 (1130)
...+++++||++++++. .++.+.++|..+.+.++.+...+. ...+..+..+|....+++.-. .+.|.+.|..+
T Consensus 80 ~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 80 PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred cceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 67799999999998875 689999999999999988765432 224566777777765544433 46665555433
Q ss_pred CchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccc
Q 001184 664 GLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKP 743 (1130)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 743 (1130)
....
T Consensus 160 ~~~~---------------------------------------------------------------------------- 163 (369)
T PF02239_consen 160 PKNL---------------------------------------------------------------------------- 163 (369)
T ss_dssp SSCE----------------------------------------------------------------------------
T ss_pred cccc----------------------------------------------------------------------------
Confidence 2000
Q ss_pred eeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcc
Q 001184 744 WELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLL 823 (1130)
Q Consensus 744 w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 823 (1130)
.+ +..
T Consensus 164 ---------------------------------------~~-------~~i----------------------------- 168 (369)
T PF02239_consen 164 ---------------------------------------KV-------TTI----------------------------- 168 (369)
T ss_dssp ---------------------------------------EE-------EEE-----------------------------
T ss_pred ---------------------------------------ce-------eee-----------------------------
Confidence 00 000
Q ss_pred eeccCCCCCCCceeEEEEecCCCEEEEEe--CCeEEEEECCCceeEEEEeC----CCCCeEEEEEeCC---------CCc
Q 001184 824 MTNDVPENAEDVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMS----PPPASTFLAFHPQ---------DNN 888 (1130)
Q Consensus 824 ~~~~~~~~~~~~i~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~----~~~~i~~l~~sp~---------~~~ 888 (1130)
..........|+|++++++++. ++.|-++|..+++.+..+.. |..+...+ .+|. .+.
T Consensus 169 -------~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~ 240 (369)
T PF02239_consen 169 -------KVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGY 240 (369)
T ss_dssp -------E--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSS
T ss_pred -------cccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccc
Confidence 0122334567788888877765 57788888888877766542 22223222 2221 122
Q ss_pred EEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEE----eCCCcEEEEECCCCcccceeeEeccCCCC
Q 001184 889 IIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSS----GSDAQLIFWNTDTWEKRKSIAIQLPAGKL 964 (1130)
Q Consensus 889 ~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~----s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~ 964 (1130)
..++.-....+.+|+..+.+.++++....++ ..+..+||+++|.+. ...++|.++|.++.+..... ... .
T Consensus 241 ~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i----~~~-~ 314 (369)
T PF02239_consen 241 FAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTI----TPG-P 314 (369)
T ss_dssp SEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-H----HHH-H
T ss_pred eecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEE----ecc-C
Confidence 2222222335667888899999999987666 788999999999988 44588999999985432211 111 0
Q ss_pred CCCeEEEEEcCCCcEEEEE---cCCcEEEEECCCceeeeeee
Q 001184 965 PVGETRVQFHSDQVRLLVN---HETQLAIYDGSKMECIRQWV 1003 (1130)
Q Consensus 965 ~~~v~~~~~s~d~~~l~~~---~d~~i~v~d~~~~~~~~~~~ 1003 (1130)
...+..+.|++||+.+.++ .++.|.+||..+.+.+..+.
T Consensus 315 ~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 315 GKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp T--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred CCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 0238899999999988874 34489999999999988875
No 213
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.61 E-value=1.9e-12 Score=128.03 Aligned_cols=239 Identities=13% Similarity=0.173 Sum_probs=170.1
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCC------CcEEEEe
Q 001184 411 SVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDD------KLIRVWD 484 (1130)
Q Consensus 411 ~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d------~~v~iwd 484 (1130)
...+++|+.|...+++|..+| .+||+++--+... ...-+.+.+.-+...--.+. +.+.||.+ +.|.|||
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~---~r~~~~~G~~~veMLfR~N~-laLVGGg~~pky~pNkviIWD 81 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESA---SRQFIDGGFKIVEMLFRSNY-LALVGGGSRPKYPPNKVIIWD 81 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhh---hhccccCchhhhhHhhhhce-EEEecCCCCCCCCCceEEEEe
Confidence 345699999999999998888 8999987532211 11112222221121122333 33334433 5799999
Q ss_pred -cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEcc-CCcceeeecCCC--ccEEEEEEecCCCeEEEee
Q 001184 485 -LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYD-NVGSRVDYDAPG--LWCTTMLYSADGSRLFSCG 560 (1130)
Q Consensus 485 -~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~-~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~ 560 (1130)
...+++.++. ...+|.++.+... .|+. -.+++|.+|... +.+....+.... ....+++-..+...||.-|
T Consensus 82 D~k~~~i~el~-f~~~I~~V~l~r~----riVv-vl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg 155 (346)
T KOG2111|consen 82 DLKERCIIELS-FNSEIKAVKLRRD----RIVV-VLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPG 155 (346)
T ss_pred cccCcEEEEEE-eccceeeEEEcCC----eEEE-EecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCC
Confidence 8899998887 6789999988542 3333 357899999887 444444444322 2344444444444555443
Q ss_pred ecCCCCcEEEEeeCCCCce--eEEEecccCceeEEEEEcCCCCEEEEEeCCCc-EEEEeCCCCceeEEEeccCCCCCcce
Q 001184 561 TSKEGDSHLVEWNESEGAL--KRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQ-IKFWDMDNVNMLTSTEAEGGLPSLPR 637 (1130)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~i~~ 637 (1130)
...|+|++-|+...+. ...+..|.. .|.|++.+-+|..+|+++..|+ |||||..+|+.+..+........|++
T Consensus 156 ---~k~GqvQi~dL~~~~~~~p~~I~AH~s-~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~ 231 (346)
T KOG2111|consen 156 ---FKTGQVQIVDLASTKPNAPSIINAHDS-DIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYC 231 (346)
T ss_pred ---CccceEEEEEhhhcCcCCceEEEcccC-ceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEE
Confidence 3479999999876555 356666554 8999999999999999999997 79999999999999987766678999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 638 LRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 638 v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
++|||++.+||++++.|++.|+.+...
T Consensus 232 iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 232 IAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 999999999999999999999998764
No 214
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.60 E-value=6.3e-14 Score=161.07 Aligned_cols=177 Identities=14% Similarity=0.176 Sum_probs=135.3
Q ss_pred EecCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCc-------ceeeecCCCccEEEEEEecCCCe
Q 001184 483 WDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVG-------SRVDYDAPGLWCTTMLYSADGSR 555 (1130)
Q Consensus 483 wd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~-------~~~~~~~~~~~v~~~~~s~~~~~ 555 (1130)
|+.+|..+..+..|...|..++.++ +++.+++|||.||+|++|+.+... ...++...+..+.++.+.+.++.
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~-~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSS-EHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCccceEeehhhhccccccceeecC-CCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 8899999999999999999888764 555899999999999999986532 22345556778999999999999
Q ss_pred EEEeeecCCCCcEEEEeeCCCC--c-----eeEEEecccCce-eEEEEEcCC-CC-EEEEEeCCCcEEEEeCCCCceeEE
Q 001184 556 LFSCGTSKEGDSHLVEWNESEG--A-----LKRTYIGFRKKS-AGVVQFDTT-RN-RILAAGEDNQIKFWDMDNVNMLTS 625 (1130)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~--~-----~~~~~~~~~~~~-v~~~~~~~~-~~-~l~~~~~dg~i~vwd~~~~~~~~~ 625 (1130)
+|+++. ||.|.+.++.-. . ..+....+..+. +..-++... +. .++.+...+.|..||.........
T Consensus 1113 ~Av~t~----DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~ 1188 (1431)
T KOG1240|consen 1113 FAVSTK----DGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR 1188 (1431)
T ss_pred EEEEcC----CCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh
Confidence 999975 999999887642 1 112222222222 333333322 23 677788889999999998877777
Q ss_pred EeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 626 TEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 626 ~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
++..-..+.|++++.+|.+.+++.|+..|.+.+||++=+
T Consensus 1189 lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~ 1227 (1431)
T KOG1240|consen 1189 LKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR 1227 (1431)
T ss_pred hhcCccccceeEEEecCCceEEEEecCCceEEEEEeecC
Confidence 666655568999999999999999999999999998644
No 215
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=1.4e-14 Score=148.81 Aligned_cols=199 Identities=13% Similarity=0.196 Sum_probs=159.7
Q ss_pred eEEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEec
Q 001184 837 PCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKG 915 (1130)
Q Consensus 837 ~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~ 915 (1130)
.+++|+++|..+++++ ||++|||+..+...+.....|...|.++.|+| |+++|++-+.| ..+||+++++..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 7899999999999998 99999999888888888888999999999999 99999999999 899999999977766552
Q ss_pred --CCCCeeEEEEccCC-----CeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE-cCCc
Q 001184 916 --HQKHITGLAFSTNL-----NILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-HETQ 987 (1130)
Q Consensus 916 --h~~~V~~l~~s~dg-----~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~d~~ 987 (1130)
.......+.|+.|+ ..+++...-+.|+.|++..+............. ....+++++.|+||++++.+ .||.
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~-~~~siSsl~VS~dGkf~AlGT~dGs 304 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIK-RFKSISSLAVSDDGKFLALGTMDGS 304 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhh-ccCcceeEEEcCCCcEEEEeccCCc
Confidence 23346677888877 333344455678888887755431111111111 11589999999999999995 6999
Q ss_pred EEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 001184 988 LAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADS 1040 (1130)
Q Consensus 988 i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~ 1040 (1130)
|.|++..+.+++..... .|..-|+.+.|+||.+++++.+.|..+.|..+.-
T Consensus 305 Vai~~~~~lq~~~~vk~--aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 305 VAIYDAKSLQRLQYVKE--AHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEEEeceeeeeEeehh--hheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 99999999888876654 4588999999999999999999999999887653
No 216
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=3.5e-14 Score=147.51 Aligned_cols=295 Identities=13% Similarity=0.118 Sum_probs=218.0
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iw 483 (1130)
.+.+|.+.|..|.|...|..|++|+.|..|.+||...++.... -..||...|....|-|.....-+++++.||.|++=
T Consensus 137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~--f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLS--FESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred cccCCCCccceeeecccCceeeccCccceEEeehhhccCcccc--cccccccchhhhhccCCCCCcCceeccccCceeee
Confidence 3779999999999999999999999999999999998775432 23689999998899886544479999999999998
Q ss_pred e--cCCCee--eEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeec---CCCc---cEEEEEEecCC
Q 001184 484 D--LSGRKL--FQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD---APGL---WCTTMLYSADG 553 (1130)
Q Consensus 484 d--~~~~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~---~~~~---~v~~~~~s~~~ 553 (1130)
. .++.+. ..+..|.++|.-++..|.. ...|++++.|+.+.-.|++.......+. .+.. ....++..|..
T Consensus 215 ~i~~t~~~e~t~rl~~h~g~vhklav~p~s-p~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n 293 (559)
T KOG1334|consen 215 EILETGYVENTKRLAPHEGPVHKLAVEPDS-PKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN 293 (559)
T ss_pred eeccccceecceecccccCccceeeecCCC-CCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence 7 455443 4566799999999987643 3678999999999999998765543322 1222 56788899977
Q ss_pred C-eEEEeeecCCCCcEEEEeeCCCCce------eEEEecc-----cCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCC--
Q 001184 554 S-RLFSCGTSKEGDSHLVEWNESEGAL------KRTYIGF-----RKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN-- 619 (1130)
Q Consensus 554 ~-~l~~~~~~~~~~~~i~~wd~~~~~~------~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~-- 619 (1130)
. .+++++. +..+++||.+.-.. +..+-.+ ....|++++++.++.-+++.-.|-.|+++.-.-
T Consensus 294 t~~faVgG~----dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~ 369 (559)
T KOG1334|consen 294 TNEFAVGGS----DQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGD 369 (559)
T ss_pred ccccccCCh----hhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecccccc
Confidence 6 6677765 77889998754221 2222222 223588999998888888888888999995432
Q ss_pred C----------ceeEE-EeccCCCCCcceEEE-cCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccc
Q 001184 620 V----------NMLTS-TEAEGGLPSLPRLRF-NKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKV 687 (1130)
Q Consensus 620 ~----------~~~~~-~~~~~~~~~i~~v~~-s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1130)
| ..+.. +++|.....|..+.| -|...++++|++-|.|.||+-.++ +.++.+.+....+.
T Consensus 370 G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~-eii~~MegDr~VVN-------- 440 (559)
T KOG1334|consen 370 GSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG-EIIRFMEGDRHVVN-------- 440 (559)
T ss_pred CCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh-HHHHHhhcccceEe--------
Confidence 2 12222 667766667888865 678899999999999999998887 77777777655333
Q ss_pred cccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeecc
Q 001184 688 PGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTE 748 (1130)
Q Consensus 688 ~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~ 748 (1130)
++.|. +.--.+++.+.|..|+||...+
T Consensus 441 -------CLEpH---------------------------P~~PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 441 -------CLEPH---------------------------PHLPVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred -------ccCCC---------------------------CCCchhhccCCccceeeecCCc
Confidence 33333 1223467888999999998743
No 217
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=3.2e-13 Score=143.04 Aligned_cols=287 Identities=13% Similarity=0.133 Sum_probs=208.9
Q ss_pred ceeeeccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEc
Q 001184 339 AVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWS 418 (1130)
Q Consensus 339 ~~~~~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 418 (1130)
+++..++|...-+.+..||||+|++|+|..--.|++||+..-.+...+. -....|.-.-+|
T Consensus 43 eLiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERh-------------------lDae~V~feiLs 103 (703)
T KOG2321|consen 43 ELIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERH-------------------LDAEVVDFEILS 103 (703)
T ss_pred HHHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeec-------------------ccccceeEEEec
Confidence 3555678999999999999999999999999999999998765443211 113356666677
Q ss_pred CCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCC
Q 001184 419 PDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHE 497 (1130)
Q Consensus 419 pdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~ 497 (1130)
.|-..++.-..|.+|-+-.-- |... ...+. ..-.+++++.-.-. |+.++....|+=.+ ..|+.+..|....
T Consensus 104 DD~SK~v~L~~DR~IefHak~-G~hy--~~RIP---~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~~~ 175 (703)
T KOG2321|consen 104 DDYSKSVFLQNDRTIEFHAKY-GRHY--RTRIP---KFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFETDS 175 (703)
T ss_pred cchhhheEeecCceeeehhhc-Ceee--eeecC---cCCccccccCCCcc--EEEeecCcceEEEEcccccccccccccc
Confidence 777777777788887665432 2211 11111 12344555544433 33333444577777 8899999999888
Q ss_pred cCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCC------C-----ccEEEEEEecCCCeEEEeeecCCCC
Q 001184 498 APVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP------G-----LWCTTMLYSADGSRLFSCGTSKEGD 566 (1130)
Q Consensus 498 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~------~-----~~v~~~~~s~~~~~l~~~~~~~~~~ 566 (1130)
+.++++.+++.. .+|++|+.+|.|..||.+.......+... . ..|+++.|+.+|-.+++|.. .
T Consensus 176 ~~lN~v~in~~h--gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts----~ 249 (703)
T KOG2321|consen 176 GELNVVSINEEH--GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS----T 249 (703)
T ss_pred ccceeeeecCcc--ceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc----C
Confidence 999999886544 68999999999999999876655543322 1 14999999999999999986 8
Q ss_pred cEEEEeeCCCCceeEEEecccCceeEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCC
Q 001184 567 SHLVEWNESEGALKRTYIGFRKKSAGVVQFDTT--RNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEG 644 (1130)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~ 644 (1130)
|.+.+||+++.+++..-......++..+.|.+. ++.+++. +...++|||-.+|+....+.... .++.+++-|++
T Consensus 250 G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~---~lND~C~~p~s 325 (703)
T KOG2321|consen 250 GSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPTS---DLNDFCFVPGS 325 (703)
T ss_pred CcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccccC---CcCceeeecCC
Confidence 999999999988876655444456777888665 3445544 45789999999999988886544 58999999999
Q ss_pred CEEEEEeCCCcEEEEEcC
Q 001184 645 NLLVVTTADQGIKILANA 662 (1130)
Q Consensus 645 ~~l~~~~~dg~i~iw~~~ 662 (1130)
.+++++-.+..+..|-+.
T Consensus 326 Gm~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 326 GMFFTANESSKMHTYYIP 343 (703)
T ss_pred ceEEEecCCCcceeEEcc
Confidence 999999988887776554
No 218
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=1.8e-13 Score=156.78 Aligned_cols=219 Identities=15% Similarity=0.160 Sum_probs=145.1
Q ss_pred eccCCCCEEEEEEecCCCeEEEEEeC--cCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCC
Q 001184 343 TMHQGSSVVSMDFHPFHHTLLVVGCG--DGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD 420 (1130)
Q Consensus 343 ~~~h~~~V~~v~fspdg~~llasg~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 420 (1130)
...|...|.+.+|||||++++.+... +..|++||+.+++..... .+.+| ..+++||||
T Consensus 199 lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~-----------------~~~g~---~~~~~wSPD 258 (429)
T PRK01742 199 VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA-----------------SFRGH---NGAPAFSPD 258 (429)
T ss_pred eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe-----------------cCCCc---cCceeECCC
Confidence 34578899999999999974443322 247999999887643210 12233 346899999
Q ss_pred CCEEEEEe-CCCeEEEE--EecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe--cCCCeeeEecC
Q 001184 421 GNFIGVAF-TKHLIHLY--TYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQFEG 495 (1130)
Q Consensus 421 g~~las~~-~d~~i~vw--d~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd--~~~~~~~~~~~ 495 (1130)
|+.|++++ .+|.+.|| |+.++.. . .+..+...+.+.+|+|||+. +++++..++..+||+ ..+.....+ .
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~~-~---~lt~~~~~~~~~~wSpDG~~-i~f~s~~~g~~~I~~~~~~~~~~~~l-~ 332 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGTP-S---QLTSGAGNNTEPSWSPDGQS-ILFTSDRSGSPQVYRMSASGGGASLV-G 332 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCCe-E---eeccCCCCcCCEEECCCCCE-EEEEECCCCCceEEEEECCCCCeEEe-c
Confidence 99998875 57766665 5555542 2 35567777899999999995 344555678888888 444444333 3
Q ss_pred CCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeC-
Q 001184 496 HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNE- 574 (1130)
Q Consensus 496 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~- 574 (1130)
+.. ....| +++++.|+..+.++ +.+||+.++........ ....++.|+|||++|+.++. ++...+|.+
T Consensus 333 ~~~--~~~~~--SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~----~g~~~~l~~~ 401 (429)
T PRK01742 333 GRG--YSAQI--SADGKTLVMINGDN-VVKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSST----QGLGKVLQLV 401 (429)
T ss_pred CCC--CCccC--CCCCCEEEEEcCCC-EEEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEEc----CCCceEEEEE
Confidence 433 34555 45667888777765 55599887665432222 12356789999999999875 444455543
Q ss_pred -CCCceeEEEecccCceeEEEEEcCC
Q 001184 575 -SEGALKRTYIGFRKKSAGVVQFDTT 599 (1130)
Q Consensus 575 -~~~~~~~~~~~~~~~~v~~~~~~~~ 599 (1130)
.+|..++.+..+.. .+...+|+|-
T Consensus 402 ~~~G~~~~~l~~~~g-~~~~p~wsp~ 426 (429)
T PRK01742 402 SADGRFKARLPGSDG-QVKFPAWSPY 426 (429)
T ss_pred ECCCCceEEccCCCC-CCCCcccCCC
Confidence 45777788876554 6777888874
No 219
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=9.3e-12 Score=134.91 Aligned_cols=573 Identities=11% Similarity=0.125 Sum_probs=335.7
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 425 (1130)
......|++|..... ++|+|+.||.++|-.+.+...-... +- +...+...-..++.||.+.|.-+.|+.+.+.|-
T Consensus 13 nnvkL~c~~WNke~g-yIAcgG~dGlLKVlKl~t~t~d~~~--~g--laa~snLsmNQtLeGH~~sV~vvTWNe~~QKLT 87 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESG-YIACGGADGLLKVLKLGTDTTDLNK--SG--LAAASNLSMNQTLEGHNASVMVVTWNENNQKLT 87 (1189)
T ss_pred CCceEEEEEEcccCC-eEEeccccceeEEEEccccCCcccc--cc--cccccccchhhhhccCcceEEEEEecccccccc
Confidence 445788999999887 5999999999999998765432110 00 011111112236899999999999999999999
Q ss_pred EEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEecCCCcCEEEEee
Q 001184 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCP 505 (1130)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~~h~~~v~~~~~ 505 (1130)
+...+|.|.||-+-.|.-.... .-......|.+++|..||. .++..-.||.|.+=..+|..+.--.-.......+.|
T Consensus 88 tSDt~GlIiVWmlykgsW~EEM-iNnRnKSvV~SmsWn~dG~--kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~w 164 (1189)
T KOG2041|consen 88 TSDTSGLIIVWMLYKGSWCEEM-INNRNKSVVVSMSWNLDGT--KICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLW 164 (1189)
T ss_pred ccCCCceEEEEeeecccHHHHH-hhCcCccEEEEEEEcCCCc--EEEEEEccCCEEEEeeccceecchhcchheccceee
Confidence 9999999999999877543321 1234566799999999999 678888888886655555554321111122234556
Q ss_pred cccCCccEEEEEecCCcEEEEEccCCc-------cee----eecCCCccEEEEEEe--------cCCCeEEEeeecCCCC
Q 001184 506 HQKENIHFIFSTAVDGKIKAWLYDNVG-------SRV----DYDAPGLWCTTMLYS--------ADGSRLFSCGTSKEGD 566 (1130)
Q Consensus 506 ~~~~~~~~l~s~s~dg~i~vwd~~~~~-------~~~----~~~~~~~~v~~~~~s--------~~~~~l~~~~~~~~~~ 566 (1130)
+ +|...++.+-.+|.+.++|....- +.. .+......+-.+.|. ||...++++-. +
T Consensus 165 s--~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~----n 238 (1189)
T KOG2041|consen 165 S--EDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYA----N 238 (1189)
T ss_pred c--ccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEc----C
Confidence 4 455677777778999999865321 111 111112234444442 57778888875 7
Q ss_pred cEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCC---------CcEEEEeCCCCceeEEEeccCCCCCcce
Q 001184 567 SHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGED---------NQIKFWDMDNVNMLTSTEAEGGLPSLPR 637 (1130)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------g~i~vwd~~~~~~~~~~~~~~~~~~i~~ 637 (1130)
|.+.+..-.+......+.. +-.+....|+++|..++.+|.+ +.|.+|.. -|..+.+++.++. .|++
T Consensus 239 Gr~QiMR~eND~~Pvv~dt--gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~--~It~ 313 (1189)
T KOG2041|consen 239 GRMQIMRSENDPEPVVVDT--GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGS--CITG 313 (1189)
T ss_pred ceehhhhhcCCCCCeEEec--ccEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCc--eeee
Confidence 7777765444333223321 2356678899999999998754 35666653 5778888887765 7999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCccc
Q 001184 638 LRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTI 717 (1130)
Q Consensus 638 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~ 717 (1130)
++|-..|-.+|.+ .|+.|.+=++.... .+-.+.. .+ +...+.. .
T Consensus 314 lsWEg~gLriA~A-vdsfiyfanIRP~y-kWgy~e~---Tv--------------Vy~y~~~---------e-------- 357 (1189)
T KOG2041|consen 314 LSWEGTGLRIAIA-VDSFIYFANIRPEY-KWGYIEE---TV--------------VYVYQKE---------E-------- 357 (1189)
T ss_pred eEEcCCceEEEEE-ecceEEEEeecccc-eEEEeee---EE--------------EEEEccC---------C--------
Confidence 9998888777766 46777776654431 1000000 00 0000000 0
Q ss_pred ccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecC
Q 001184 718 LNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWN 797 (1130)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~ 797 (1130)
.-...|.+|+..+.....+ .-....++++..+--.++.-..++.+.-++.-
T Consensus 358 ------------------~p~y~i~Fwdtk~nek~vK-----------~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~l 408 (1189)
T KOG2041|consen 358 ------------------LPQYGIMFWDTKTNEKTVK-----------TVTHFENMAFYREHCVLINRQDDGVIPEYSTL 408 (1189)
T ss_pred ------------------CcceEEEEEecccChhhhh-----------hhcceeehheecccEEEEeccccCCCcchhhh
Confidence 0003355666544221111 11122344555444444444445555433110
Q ss_pred CCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEeCCeEEEEECCCceeEEEEeC---CC
Q 001184 798 RTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMS---PP 874 (1130)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~---~~ 874 (1130)
.. .. ......+-+.- |..+. ..-..|.-.-..-++.+++.++...+.+|.....+....+.+ +.
T Consensus 409 e~-----~~--~~~~l~LCNSI-GT~lD-----~kytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK~~s~l~~~k~rk 475 (1189)
T KOG2041|consen 409 EN-----RS--RVYFLQLCNSI-GTSLD-----YKYTDIRPKFVCVNGICVVIASEERYFIWHYVLPKFNSVLAGVKIRK 475 (1189)
T ss_pred hc-----cc--ceEEEeeeccc-CCcCC-----CCcceeeeeEEEecceEEEEeccccEEEEEEeccchhhhhhhhhhcc
Confidence 00 00 00000111100 00000 011122222223367788888888999998765544433332 11
Q ss_pred CCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccce
Q 001184 875 PASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKS 954 (1130)
Q Consensus 875 ~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~ 954 (1130)
..- |+-| ..-+|..|+++.- . ..++.|..++|.+++.+ .++|..+-..|.|.-+.+........
T Consensus 476 egr----~h~D---dtp~ga~d~~l~y---s----~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l~n~ 539 (1189)
T KOG2041|consen 476 EGR----FHGD---DTPEGAQDRTLEY---S----TKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVLTNS 539 (1189)
T ss_pred ccc----ccCC---CCccchhhceeec---c----ceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceeeeec
Confidence 111 3221 1224555654421 1 35677889999999997 56899999999999999988443222
Q ss_pred eeEeccCCCCCCCeEEEEEcCCCcEEEE-EcCCcEEEEECC---CceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCC
Q 001184 955 IAIQLPAGKLPVGETRVQFHSDQVRLLV-NHETQLAIYDGS---KMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD 1030 (1130)
Q Consensus 955 ~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~d~~i~v~d~~---~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~D 1030 (1130)
. .....+.++...-+...+++ ..-+.+.+.|+. +|..+..+.... ...|+.+.|..|...|++--+.
T Consensus 540 y-------~~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~e--rrDVWd~~Wa~dNp~llAlmeK 610 (1189)
T KOG2041|consen 540 Y-------PVNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSE--RRDVWDYEWAQDNPNLLALMEK 610 (1189)
T ss_pred c-------ccCchheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeeehhh--hhhhhhhhhccCCchHHhhhhh
Confidence 1 12256778888888887776 456777777776 455544333222 5689999999998877777666
Q ss_pred CcEEEEeCCC
Q 001184 1031 GSIGVFDADS 1040 (1130)
Q Consensus 1031 g~i~vwd~~~ 1040 (1130)
-.++|++-..
T Consensus 611 trmyifrgnd 620 (1189)
T KOG2041|consen 611 TRMYIFRGND 620 (1189)
T ss_pred ceEEEecCcC
Confidence 6788886543
No 220
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=1.9e-12 Score=147.73 Aligned_cols=238 Identities=13% Similarity=0.124 Sum_probs=156.6
Q ss_pred CeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeC---CCeEEEEEecCCcccee
Q 001184 370 GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFT---KHLIHLYTYQGSNDLCQ 446 (1130)
Q Consensus 370 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~---d~~i~vwd~~~~~~~~~ 446 (1130)
..|.+||...+.... +..+...+.+.+|||||+.||..+. +..|.+||+.+|+.. .
T Consensus 179 ~~l~~~d~dg~~~~~--------------------lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-~ 237 (429)
T PRK03629 179 YELRVSDYDGYNQFV--------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-Q 237 (429)
T ss_pred eeEEEEcCCCCCCEE--------------------eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-E
Confidence 368899887654332 3456678999999999999987643 357999999887632 2
Q ss_pred eeeeecCCCCeeEEEEecCCCceEEEEEcCCC--cEEEEecCCCeeeEecCCCcCEEEEeecccCCccEEEEEec-CCcE
Q 001184 447 SLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK--LIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAV-DGKI 523 (1130)
Q Consensus 447 ~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~--~v~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg~i 523 (1130)
+....+.+..++|+|||+. ++++.+.++ .|++||..+..+..+..+...+....|+| +++.|+..+. ++..
T Consensus 238 ---l~~~~~~~~~~~~SPDG~~-La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSP--DG~~I~f~s~~~g~~ 311 (429)
T PRK03629 238 ---VASFPRHNGAPAFSPDGSK-LAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFP--DSQNLAYTSDQAGRP 311 (429)
T ss_pred ---ccCCCCCcCCeEECCCCCE-EEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECC--CCCEEEEEeCCCCCc
Confidence 2223334567899999995 333444444 58889954444555555556677788865 5566766654 4555
Q ss_pred EEE--EccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCC
Q 001184 524 KAW--LYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRN 601 (1130)
Q Consensus 524 ~vw--d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 601 (1130)
.+| |+..+.. ..+...........|+|||++++..+. .++...|++||+.+++... +.... ......|+|||+
T Consensus 312 ~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~-~~g~~~I~~~dl~~g~~~~-Lt~~~--~~~~p~~SpDG~ 386 (429)
T PRK03629 312 QVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSS-NGGQQHIAKQDLATGGVQV-LTDTF--LDETPSIAPNGT 386 (429)
T ss_pred eEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEc-cCCCceEEEEECCCCCeEE-eCCCC--CCCCceECCCCC
Confidence 555 5544433 333334445667899999999988764 2335679999998886543 33211 233577999999
Q ss_pred EEEEEeCCCc---EEEEeCCCCceeEEEeccCCCCCcceEEEcC
Q 001184 602 RILAAGEDNQ---IKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK 642 (1130)
Q Consensus 602 ~l~~~~~dg~---i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~ 642 (1130)
+|+.++.++. +++++++ |.....+..+.+ .+...+|+|
T Consensus 387 ~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~~--~~~~p~Wsp 427 (429)
T PRK03629 387 MVIYSSSQGMGSVLNLVSTD-GRFKARLPATDG--QVKFPAWSP 427 (429)
T ss_pred EEEEEEcCCCceEEEEEECC-CCCeEECccCCC--CcCCcccCC
Confidence 9999887764 7777874 444455544333 577888887
No 221
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=1.2e-14 Score=160.28 Aligned_cols=338 Identities=18% Similarity=0.186 Sum_probs=221.7
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCcccccccccCCCCC-CCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCccccCc
Q 001184 170 RLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCSPPN-GARAPTPVTLPVAAVAKPATYAPLGAHAVPFPPAVAAANA 248 (1130)
Q Consensus 170 rL~~ll~qa~~~q~~~~~~~~~~~~~~sl~~~h~c~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 248 (1130)
-|..|+.|+++.|+.+|+.+.++.+.+|||..|+|+++. ..+.|...+..++.-. +|+
T Consensus 1014 sLdSIVt~Ylr~QH~~CknPVtTcPPfSLf~pH~CPEpk~~~~ap~N~t~Rl~~re-------------l~~-------- 1072 (1516)
T KOG1832|consen 1014 SLDSIVTQYLRHQHRQCKNPVTTCPPFSLFHPHVCPEPKRLLEAPLNMTGRLGTRE-------------LQS-------- 1072 (1516)
T ss_pred cHHHHHHHHHHHHHHhhcCCcccCCChhhcCCccCCChHHHhhcchhhhhcccchh-------------hcC--------
Confidence 499999999999999999999999999999999999863 2334444433221100 000
Q ss_pred hhhhhccccCCCCCcccccccccCCCCCCCCccccccCCCCCCCCCccccCCCCChHHHHHhhcccCCcccccccCCCCC
Q 001184 249 NALAGWMMNANPSSSIQSSVVAASSLPVQPNQVSVLKHPRAPSNTLGMIDYPSSDHEQLKKRLRASQSVDEATYPVPSQQ 328 (1130)
Q Consensus 249 ~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 328 (1130)
. .+.+.....+..-+..++|.+.
T Consensus 1073 ---------------~-----------------------------y~gV~g~~~dr~~IFSRFr~w~------------- 1095 (1516)
T KOG1832|consen 1073 ---------------F-----------------------------YSGVHGNRRDRQFIFSRFRSWR------------- 1095 (1516)
T ss_pred ---------------c-----------------------------ccccccCcccchhhHhhcccch-------------
Confidence 0 0122223344444555665542
Q ss_pred cccccCCcccceeeec-cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecC
Q 001184 329 ATWSLDDLPRAVACTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKD 407 (1130)
Q Consensus 329 ~~~~~~~~~~~~~~~~-~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (1130)
.+ .|...-+|++||-+.+ .|+.|+..|.|+++++.+|.... ....
T Consensus 1096 --------------~frd~~~~fTc~afs~~~~-hL~vG~~~Geik~~nv~sG~~e~-------------------s~nc 1141 (1516)
T KOG1832|consen 1096 --------------SFRDETALFTCIAFSGGTN-HLAVGSHAGEIKIFNVSSGSMEE-------------------SVNC 1141 (1516)
T ss_pred --------------hhhccccceeeEEeecCCc-eEEeeeccceEEEEEccCccccc-------------------cccc
Confidence 23 3778999999999988 59999999999999999998765 3668
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCC--eEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-
Q 001184 408 SSISVSRVAWSPDGNFIGVAFTKH--LIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD- 484 (1130)
Q Consensus 408 h~~~V~~v~~spdg~~las~~~d~--~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd- 484 (1130)
|.++|+-+.-|.||..+.+.+.-. ...+|++.+- ....+++. .-.++.|+..... -+.|..-..+.+||
T Consensus 1142 H~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~--~~~~Hsf~----ed~~vkFsn~~q~--r~~gt~~d~a~~YDv 1213 (1516)
T KOG1832|consen 1142 HQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASST--GGPRHSFD----EDKAVKFSNSLQF--RALGTEADDALLYDV 1213 (1516)
T ss_pred cccccccccccCCcceeeeeccccCchHHHhccccc--cCcccccc----ccceeehhhhHHH--HHhcccccceEEEec
Confidence 999999999999999777664432 4679998762 22223333 2467888877553 23333345688999
Q ss_pred cCCCeeeEe-cC---CCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEee
Q 001184 485 LSGRKLFQF-EG---HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCG 560 (1130)
Q Consensus 485 ~~~~~~~~~-~~---h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 560 (1130)
.++..+.++ .+ ....-++..|+|.. .+++- || .+||++..+.+..+..-.. .-.-.|.|.|..++..+
T Consensus 1214 qT~~~l~tylt~~~~~~y~~n~a~FsP~D--~LIln---dG--vLWDvR~~~aIh~FD~ft~-~~~G~FHP~g~eVIINS 1285 (1516)
T KOG1832|consen 1214 QTCSPLQTYLTDTVTSSYSNNLAHFSPCD--TLILN---DG--VLWDVRIPEAIHRFDQFTD-YGGGGFHPSGNEVIINS 1285 (1516)
T ss_pred ccCcHHHHhcCcchhhhhhccccccCCCc--ceEee---Cc--eeeeeccHHHHhhhhhhee-cccccccCCCceEEeec
Confidence 888777663 22 12222455565543 44443 34 4699998877766554332 12345899999998865
Q ss_pred ecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEe--CC---------------CcEEEEeCCCCcee
Q 001184 561 TSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAG--ED---------------NQIKFWDMDNVNML 623 (1130)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d---------------g~i~vwd~~~~~~~ 623 (1130)
.|||+++.++++....-. -..+.|+..|+.++..- .| ...+-++......+
T Consensus 1286 ---------EIwD~RTF~lLh~VP~Ld---qc~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~i 1353 (1516)
T KOG1832|consen 1286 ---------EIWDMRTFKLLHSVPSLD---QCAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDI 1353 (1516)
T ss_pred ---------hhhhhHHHHHHhcCcccc---ceEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccc
Confidence 489999999888776542 34577888887666542 00 12445555555666
Q ss_pred EEEeccCCCCCcceEEEcCCCCEEEEE
Q 001184 624 TSTEAEGGLPSLPRLRFNKEGNLLVVT 650 (1130)
Q Consensus 624 ~~~~~~~~~~~i~~v~~s~~~~~l~~~ 650 (1130)
.++.... .+..++-+|...++++-
T Consensus 1354 aTi~v~R---~~~Dlct~~~D~~l~vI 1377 (1516)
T KOG1832|consen 1354 ATIPVDR---CLLDLCTEPTDSFLGVI 1377 (1516)
T ss_pred eeeeccc---chhhhhcCCccceEEEE
Confidence 6665443 45666666655555544
No 222
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=2.7e-12 Score=128.65 Aligned_cols=285 Identities=16% Similarity=0.194 Sum_probs=185.6
Q ss_pred CCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCC-CCEEE
Q 001184 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD-GNFIG 425 (1130)
Q Consensus 347 ~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd-g~~la 425 (1130)
+..+..++|++--- -+|++..|-.|+|||-....... .-......|+|++|-|. ++-|+
T Consensus 98 ~~dlr~~aWhqH~~-~fava~nddvVriy~ksst~pt~-------------------Lks~sQrnvtclawRPlsasela 157 (445)
T KOG2139|consen 98 EIDLRGVAWHQHII-AFAVATNDDVVRIYDKSSTCPTK-------------------LKSVSQRNVTCLAWRPLSASELA 157 (445)
T ss_pred hcceeeEeechhhh-hhhhhccCcEEEEeccCCCCCce-------------------ecchhhcceeEEEeccCCcceee
Confidence 34678899999443 47788899999999977622211 11233568999999996 55788
Q ss_pred EEeCCCeEEEEEecCCccc-----------eeeeeeecCCCCeeEEEEecCCCceEEEEEcC-CCcEEEEe-cCCCeeeE
Q 001184 426 VAFTKHLIHLYTYQGSNDL-----------CQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD-DKLIRVWD-LSGRKLFQ 492 (1130)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~-----------~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~-d~~v~iwd-~~~~~~~~ 492 (1130)
+|+..| |.+|........ .+...-.|| .+|++++|.+||. .+++++. |..|.||| .+|.++.-
T Consensus 158 vgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~pL 233 (445)
T KOG2139|consen 158 VGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIPL 233 (445)
T ss_pred eeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCcccc
Confidence 888766 899987431111 111223455 5899999999999 6777764 67899999 66666544
Q ss_pred ecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEe
Q 001184 493 FEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEW 572 (1130)
Q Consensus 493 ~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w 572 (1130)
...-.+.+.-+.|+| |+.+|+.++-|+..++|+....-.........+.|...+|+|+|++|+.+.. +...|+-.
T Consensus 234 ~~~glgg~slLkwSP--dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s---gsp~lysl 308 (445)
T KOG2139|consen 234 IPKGLGGFSLLKWSP--DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS---GSPRLYSL 308 (445)
T ss_pred cccCCCceeeEEEcC--CCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc---CCceEEEE
Confidence 444557788888865 5579999999999999965443333333334448999999999999887653 12223221
Q ss_pred eC--CCCc-----------eeEEE------ec--ccCceeEEEEEcCCCCEEEEEeCC--------CcEEEEeCCCCcee
Q 001184 573 NE--SEGA-----------LKRTY------IG--FRKKSAGVVQFDTTRNRILAAGED--------NQIKFWDMDNVNML 623 (1130)
Q Consensus 573 d~--~~~~-----------~~~~~------~~--~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~vwd~~~~~~~ 623 (1130)
.. +.+. ++..+ .+ .-.+...+++|.|.|.++++.-.. +.|.+||....-.+
T Consensus 309 ~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~v 388 (445)
T KOG2139|consen 309 TFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPV 388 (445)
T ss_pred eecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCce
Confidence 11 1110 00001 11 012367789999999999986433 34677887665444
Q ss_pred EEE--eccCCCCCcceEEEcC---CCCEEEEEeCCCcEEEEEc
Q 001184 624 TST--EAEGGLPSLPRLRFNK---EGNLLVVTTADQGIKILAN 661 (1130)
Q Consensus 624 ~~~--~~~~~~~~i~~v~~s~---~~~~l~~~~~dg~i~iw~~ 661 (1130)
... ...++. ....+.|+| ++.+|.++-..|.+.-|++
T Consensus 389 els~cg~i~ge-~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 389 ELSYCGMIGGE-YPAYISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred EEEecccccCC-CCceEEeeecccCCcEEEEEeccCceEeeee
Confidence 333 111221 245677776 6778888888888877765
No 223
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.55 E-value=6.9e-09 Score=127.09 Aligned_cols=515 Identities=14% Similarity=0.154 Sum_probs=282.1
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCCeEEEE----EecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEE
Q 001184 407 DSSISVSRVAWSPDGNFIGVAFTKHLIHLY----TYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRV 482 (1130)
Q Consensus 407 ~h~~~V~~v~~spdg~~las~~~d~~i~vw----d~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~i 482 (1130)
...+.|.++.|-+|...|+.+..+|.|.+. +..+.. +. ....-...|.+++||||+. +|+....++++.+
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E---~VG~vd~GI~a~~WSPD~E--lla~vT~~~~l~~ 146 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IE---IVGSVDSGILAASWSPDEE--LLALVTGEGNLLL 146 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eE---EEEEEcCcEEEEEECCCcC--EEEEEeCCCEEEE
Confidence 345789999999999999999999999999 544432 22 2233456899999999999 6777777888888
Q ss_pred EecCCCeeeEecCCCcC-----EEEEeecccCCccEEEEEecCCcE-E-EEEccCC-cceeeecCCCccEEEEEEecCCC
Q 001184 483 WDLSGRKLFQFEGHEAP-----VYSVCPHQKENIHFIFSTAVDGKI-K-AWLYDNV-GSRVDYDAPGLWCTTMLYSADGS 554 (1130)
Q Consensus 483 wd~~~~~~~~~~~h~~~-----v~~~~~~~~~~~~~l~s~s~dg~i-~-vwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~ 554 (1130)
...+-..+....-+... -.++-|-... .=+=|+.-+.. + .=+.... .....+. ....-..++|..||.
T Consensus 147 mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKe---TQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~ 222 (928)
T PF04762_consen 147 MTRDFDPISEVPLDSDDFGESKHVSVGWGKKE---TQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGE 222 (928)
T ss_pred EeccceEEEEeecCccccCCCceeeeccCccc---CccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCc
Confidence 77666666554433221 1122221110 00000000000 0 0000000 0001112 233456899999999
Q ss_pred eEEEeeecCC-C-CcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeC---CCcEEEEeCCCCceeEEEecc
Q 001184 555 RLFSCGTSKE-G-DSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGE---DNQIKFWDMDNVNMLTSTEAE 629 (1130)
Q Consensus 555 ~l~~~~~~~~-~-~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~ 629 (1130)
++|+.+.+.. + ...+++|+.+ |.+..+-.. ..+--.+++|-|.|++|++... ...|.+|.. +|-.-..+...
T Consensus 223 yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~-v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~ 299 (928)
T PF04762_consen 223 YFAVSSVEPETGSRRVIRVYSRE-GELQSTSEP-VDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLR 299 (928)
T ss_pred EEEEEEEEcCCCceeEEEEECCC-ceEEecccc-CCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecC
Confidence 9998876333 2 5889999954 765554442 2334556899999999998754 456777774 44444444433
Q ss_pred --CCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccC
Q 001184 630 --GGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVD 707 (1130)
Q Consensus 630 --~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~ 707 (1130)
.....|..+.|++|+..||+...|. |.+|-..+-.
T Consensus 300 ~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH------------------------------------------ 336 (928)
T PF04762_consen 300 FDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH------------------------------------------ 336 (928)
T ss_pred CCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE------------------------------------------
Confidence 2334789999999999999988665 9999865431
Q ss_pred CCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccC-CeEEEee
Q 001184 708 RSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSG-IGILALW 786 (1130)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g-~~l~~~~ 786 (1130)
|-+. ..+.++ ....+..+.|+|.. ..+....
T Consensus 337 ------------------------------------WYLK--------qei~~~----~~~~~~~~~Wdpe~p~~L~v~t 368 (928)
T PF04762_consen 337 ------------------------------------WYLK--------QEIRFS----SSESVNFVKWDPEKPLRLHVLT 368 (928)
T ss_pred ------------------------------------EEEE--------EEEEcc----CCCCCCceEECCCCCCEEEEEe
Confidence 1100 000000 11122235666643 3455555
Q ss_pred eCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEec-CCCEEEEEeCCeEEEEECCCce
Q 001184 787 SNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSK-NDSYVMSAGGGKVSLFNMMNFK 865 (1130)
Q Consensus 787 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~-dg~~la~~~dg~i~iwd~~~~~ 865 (1130)
.+|.+..+++. |+...+. ..+| |...+++-.+.++.+-.+....
T Consensus 369 ~~g~~~~~~~~------------------~~v~~s~-----------------~~~~~D~g~vaVIDG~~lllTpf~~a~ 413 (928)
T PF04762_consen 369 SNGQYEIYDFA------------------WDVSRSP-----------------GSSPNDNGTVAVIDGNKLLLTPFRRAV 413 (928)
T ss_pred cCCcEEEEEEE------------------EEEEecC-----------------CCCccCceEEEEEeCCeEEEecccccC
Confidence 55666655431 1111000 0011 2223344444557776665432
Q ss_pred e-----EEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeE--------EEEEe----------cCCCCeeE
Q 001184 866 V-----MTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEV--------KTKLK----------GHQKHITG 922 (1130)
Q Consensus 866 ~-----~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~--------~~~l~----------~h~~~V~~ 922 (1130)
. ...+. -...|.+++|++ ++..+|+-..||.|.+|....... ...+. .-...+..
T Consensus 414 VPPPMs~~~l~-~~~~v~~vaf~~-~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (928)
T PF04762_consen 414 VPPPMSSYELE-LPSPVNDVAFSP-SNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQ 491 (928)
T ss_pred CCchHhceEEc-CCCCcEEEEEeC-CCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEE
Confidence 2 12232 346799999999 666688899999999998653211 11111 12345788
Q ss_pred EEEccCCCeEEEEeCC---CcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCc-EEEEEcCCcEEEEECCCcee
Q 001184 923 LAFSTNLNILVSSGSD---AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQV-RLLVNHETQLAIYDGSKMEC 998 (1130)
Q Consensus 923 l~~s~dg~~L~s~s~D---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~~~~d~~i~v~d~~~~~~ 998 (1130)
++|..+...++....+ ..+.++++...+........ . .....+..+...++.. .++-..+|.+..++......
T Consensus 492 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~~ 568 (928)
T PF04762_consen 492 LAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESS-T--EVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGELS 568 (928)
T ss_pred EEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEE-e--ccCceEEEEeeCCCCcEEEEEECCCEEEEeecCCCcc
Confidence 8998887777766654 57888888543221111111 1 1113444444555554 33336688887666554332
Q ss_pred e-eeeecCCCCCCCeEEEEECCCCC---EEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCC
Q 001184 999 I-RQWVPQDVLSSPISSAAYSCNSQ---LIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQE 1074 (1130)
Q Consensus 999 ~-~~~~~~~~~~~~v~~v~~s~dg~---~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1074 (1130)
. ..+... .+-..++...+.. .++.-+..|.+++ ++..++ ..++++..+
T Consensus 569 ~~~~fp~~----c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~----n~~~la-----------------~~~tSF~v~--- 620 (928)
T PF04762_consen 569 QIVKFPQP----CPWMEVCQINGSEDKRVLFGLSSNGRLYA----NSRLLA-----------------SNCTSFAVT--- 620 (928)
T ss_pred ccccCCCC----CcEEEEEEECCccceeEEEEECCCCEEEE----CCEEEe-----------------cCCceEEEE---
Confidence 2 122211 1222333333333 3443344455554 222221 112334333
Q ss_pred CCEEEEEeCCCcEEEEeCC
Q 001184 1075 PNQLAVGLTDGSVKVIEPS 1093 (1130)
Q Consensus 1075 ~~~l~s~~~Dg~v~vW~~~ 1093 (1130)
+.+|+.......+++.++.
T Consensus 621 ~~~Ll~TT~~h~l~fv~L~ 639 (928)
T PF04762_consen 621 DSFLLFTTTQHTLKFVHLN 639 (928)
T ss_pred cCEEEEEecCceEEEEECc
Confidence 2456666667779999998
No 224
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=2.4e-12 Score=128.97 Aligned_cols=204 Identities=8% Similarity=0.083 Sum_probs=138.2
Q ss_pred CceeEEEEecCCCEEEEEe--CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEE
Q 001184 834 DVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKT 911 (1130)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~ 911 (1130)
..|++|.+.+||..+++++ +..|.|||..++..+.......+.++-+.||| |+.+|..++-|+..++|+........
T Consensus 196 ~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~e 274 (445)
T KOG2139|consen 196 NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKE 274 (445)
T ss_pred ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccceec
Confidence 7899999999999999998 67899999999988776655567799999999 88899999999999999665443333
Q ss_pred EEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccc-----------eeeEe-------ccCCCCCCCeEEEEE
Q 001184 912 KLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRK-----------SIAIQ-------LPAGKLPVGETRVQF 973 (1130)
Q Consensus 912 ~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~-----------~~~~~-------~~~~~~~~~v~~~~~ 973 (1130)
...--++.|...+|+|+|++|..+... .-++|.+.-.++.. ..... .....-.+++.+++|
T Consensus 275 rw~lgsgrvqtacWspcGsfLLf~~sg-sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~law 353 (445)
T KOG2139|consen 275 RWILGSGRVQTACWSPCGSFLLFACSG-SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAW 353 (445)
T ss_pred ceeccCCceeeeeecCCCCEEEEEEcC-CceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeE
Confidence 444445689999999999976654432 23445443211110 00000 000111257889999
Q ss_pred cCCCcEEEEEcC---------CcEEEEECCCceeeeeeecCCCCCCCeEEEEECC---CCCEEEEEeCCCcEEEEeCC
Q 001184 974 HSDQVRLLVNHE---------TQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSC---NSQLIYATFTDGSIGVFDAD 1039 (1130)
Q Consensus 974 s~d~~~l~~~~d---------~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~---dg~~l~t~~~Dg~i~vwd~~ 1039 (1130)
.|.|.+|++... ..|.+||....-.+............-..++|.| +|.+|..+=+-|.|.-|++.
T Consensus 354 DpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 354 DPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred CCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 999999998432 2366777765444443322211123345677766 56677777778888888764
No 225
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.55 E-value=8.6e-13 Score=130.28 Aligned_cols=253 Identities=12% Similarity=0.104 Sum_probs=187.2
Q ss_pred CCCceeEEEEecCCCEEEEEe-CCeEEEEECCCc---eeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEee-c
Q 001184 832 AEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNF---KVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVR-V 906 (1130)
Q Consensus 832 ~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~---~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~-~ 906 (1130)
...+|+|.||++|+..+|++. ...|.||..... +...++..|...|+.++|+| ....|++++.|..-+||... .
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-CCCceeEccCCCCccccccCCC
Confidence 367899999999999999998 568999987654 56788899999999999999 78889999999999999984 3
Q ss_pred C--eEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEE-E
Q 001184 907 D--EVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV-N 983 (1130)
Q Consensus 907 ~--~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~ 983 (1130)
+ +....+..|....+++.|+|.++.+|+++.-..|.||-++.... -.............|.++.|+|++-+|++ +
T Consensus 88 ~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENd--WWVsKhikkPirStv~sldWhpnnVLlaaGs 165 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEND--WWVSKHIKKPIRSTVTSLDWHPNNVLLAAGS 165 (361)
T ss_pred CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccc--eehhhhhCCccccceeeeeccCCcceecccc
Confidence 3 45556677899999999999999999999999999998876321 10011111222378999999999999998 5
Q ss_pred cCCcEEEEECC-----C-------------ceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCccccc
Q 001184 984 HETQLAIYDGS-----K-------------MECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRC 1045 (1130)
Q Consensus 984 ~d~~i~v~d~~-----~-------------~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~ 1045 (1130)
.|+..+||..- . |+++.++.. ..+.|..+.|+|+|..|+-.+.|.++.+=|....+...
T Consensus 166 ~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~---~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v 242 (361)
T KOG1523|consen 166 TDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASS---SGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERV 242 (361)
T ss_pred cCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhcc---CCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhc
Confidence 69999988642 1 222333322 26789999999999999999999999999988776332
Q ss_pred ccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCccCCcccc
Q 001184 1046 RIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETERKWGVAV 1103 (1130)
Q Consensus 1046 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~~~~~~w~~~~ 1103 (1130)
..-...++ --+++.|..+ ..++.++.|+.=.++...+.. .|....
T Consensus 243 ~~~~~~~l----------P~ls~~~ise--~~vv~ag~~c~P~lf~~~~~~-~l~~~~ 287 (361)
T KOG1523|consen 243 QSVATAQL----------PLLSVSWISE--NSVVAAGYDCGPVLFVTDEEG-GLSFAR 287 (361)
T ss_pred cchhhccC----------CceeeEeecC--CceeecCCCCCceEEEecccc-ceeeeh
Confidence 22211112 2235666553 467777777655566665554 454433
No 226
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.54 E-value=1e-08 Score=125.64 Aligned_cols=504 Identities=14% Similarity=0.168 Sum_probs=283.7
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEE----eCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCC
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLW----DVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDG 421 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iw----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg 421 (1130)
..+.|.++.|-++... ++.+..+|.|.+. +..+.... +...-...|.+++||||+
T Consensus 74 ~~~~ivs~~yl~d~~~-l~~~~~~Gdi~~~~~~~~~~~~~~E--------------------~VG~vd~GI~a~~WSPD~ 132 (928)
T PF04762_consen 74 PNDKIVSFQYLADSES-LCIALASGDIILVREDPDPDEDEIE--------------------IVGSVDSGILAASWSPDE 132 (928)
T ss_pred CCCcEEEEEeccCCCc-EEEEECCceEEEEEccCCCCCceeE--------------------EEEEEcCcEEEEEECCCc
Confidence 4579999999999984 7788889999999 55544332 234456789999999999
Q ss_pred CEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecC--CCceEEEEEcCCCcEEEEe-cCCCee--------
Q 001184 422 NFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYP--NKQLCIVTCGDDKLIRVWD-LSGRKL-------- 490 (1130)
Q Consensus 422 ~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d--~~~l~l~s~s~d~~v~iwd-~~~~~~-------- 490 (1130)
..||..+.++++.+.+.. -..+ .-..+.++ |.. ..++.|..+.=.-+. ..|+..
T Consensus 133 Ella~vT~~~~l~~mt~~-fd~i-------------~E~~l~~~~~~~~-~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~ 197 (928)
T PF04762_consen 133 ELLALVTGEGNLLLMTRD-FDPI-------------SEVPLDSDDFGES-KHVSVGWGKKETQFHGSAGKAAARQLRDPT 197 (928)
T ss_pred CEEEEEeCCCEEEEEecc-ceEE-------------EEeecCccccCCC-ceeeeccCcccCccCcchhhhhhhhccCCC
Confidence 999999999988876421 1111 11111111 100 233333221111111 112210
Q ss_pred ------eEecCCCcCEEEEeecccCCccEEEEEec---C---CcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEE
Q 001184 491 ------FQFEGHEAPVYSVCPHQKENIHFIFSTAV---D---GKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFS 558 (1130)
Q Consensus 491 ------~~~~~h~~~v~~~~~~~~~~~~~l~s~s~---d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 558 (1130)
..+. +...-..++| .+||.++++.+. . ..+|||+-+ +.....-+.-.+--.+++|.|.|++||+
T Consensus 198 ~~~~d~~~~s-~dd~~~~ISW--RGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~ 273 (928)
T PF04762_consen 198 VPKVDEGKLS-WDDGRVRISW--RGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIAS 273 (928)
T ss_pred CCccccCccc-cCCCceEEEE--CCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEE
Confidence 1112 3334445555 688899988875 2 478999865 3322222222333457899999999998
Q ss_pred eeecCCCCcEEEEeeCCCCceeEEEecc---cCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcee--EEEeccCCCC
Q 001184 559 CGTSKEGDSHLVEWNESEGALKRTYIGF---RKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNML--TSTEAEGGLP 633 (1130)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~--~~~~~~~~~~ 633 (1130)
... ......|.+|. ++|-.-..|.-. ....+..+.|++++..|+..-.|. |.+|...+.... +.+..... .
T Consensus 274 ~q~-~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~-~ 349 (928)
T PF04762_consen 274 SQR-LPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSS-E 349 (928)
T ss_pred EEE-cCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCC-C
Confidence 875 33356677776 455554444432 344788899999999999977655 999999887633 33333222 2
Q ss_pred CcceEEEcCC-CCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCC
Q 001184 634 SLPRLRFNKE-GNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPA 712 (1130)
Q Consensus 634 ~i~~v~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~ 712 (1130)
.+..+.|+|. ...|.+.+.+|.+..+++.-.. ..++.
T Consensus 350 ~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v-----------------------------~~s~~------------- 387 (928)
T PF04762_consen 350 SVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDV-----------------------------SRSPG------------- 387 (928)
T ss_pred CCCceEECCCCCCEEEEEecCCcEEEEEEEEEE-----------------------------EecCC-------------
Confidence 4556999994 5567777777887776642210 00000
Q ss_pred CCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEE
Q 001184 713 RPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQK 792 (1130)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~ 792 (1130)
. +|+...+++.-+...+.
T Consensus 388 -----------------------------------------------------~---------~~~D~g~vaVIDG~~ll 405 (928)
T PF04762_consen 388 -----------------------------------------------------S---------SPNDNGTVAVIDGNKLL 405 (928)
T ss_pred -----------------------------------------------------C---------CccCceEEEEEeCCeEE
Confidence 0 00001111111222333
Q ss_pred eeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCCceeE----
Q 001184 793 LWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVM---- 867 (1130)
Q Consensus 793 iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~---- 867 (1130)
+-.+......|.-. .+. + .....|.+++|++++..+++-. ||.|.+|........
T Consensus 406 lTpf~~a~VPPPMs--------~~~----------l--~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~ 465 (928)
T PF04762_consen 406 LTPFRRAVVPPPMS--------SYE----------L--ELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKP 465 (928)
T ss_pred EecccccCCCchHh--------ceE----------E--cCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccC
Confidence 32222211111100 000 0 2357899999999988666554 899999885432211
Q ss_pred ----EEE----------eCCCCCeEEEEEeCCCCcEEEEEeCC---CcEEEEEeecC---eEEEEEecCCCCeeEEEEcc
Q 001184 868 ----TTF----------MSPPPASTFLAFHPQDNNIIAIGMED---STIQIYNVRVD---EVKTKLKGHQKHITGLAFST 927 (1130)
Q Consensus 868 ----~~~----------~~~~~~i~~l~~sp~~~~~lasg~~d---g~v~iwd~~~~---~~~~~l~~h~~~V~~l~~s~ 927 (1130)
..+ ......+..++|.. +..+++....+ ..+.++++... ..+.....-.+.+..+...+
T Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (928)
T PF04762_consen 466 PKLLSSISLDSMDISDSELPLGSLRQLAWLN-DDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSP 544 (928)
T ss_pred cchhhhcccccccccccccccccEEEEEEeC-CCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCC
Confidence 111 11234578888887 56666665554 57888887433 22333333445566666666
Q ss_pred CCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCc--EEEEE--cCCcEEEEECCCceeeeeee
Q 001184 928 NLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQV--RLLVN--HETQLAIYDGSKMECIRQWV 1003 (1130)
Q Consensus 928 dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~--~l~~~--~d~~i~v~d~~~~~~~~~~~ 1003 (1130)
+...++.-..||.+...+........ .+.+.. ..-..+....+.. .++.| ..+.+++ ++..+
T Consensus 545 ~~~~~~~q~~~G~v~~~~~~~~~~~~---~~fp~~---c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~----n~~~l---- 610 (928)
T PF04762_consen 545 DSGSLYIQTNDGKVFQLSSDGELSQI---VKFPQP---CPWMEVCQINGSEDKRVLFGLSSNGRLYA----NSRLL---- 610 (928)
T ss_pred CCcEEEEEECCCEEEEeecCCCcccc---ccCCCC---CcEEEEEEECCccceeEEEEECCCCEEEE----CCEEE----
Confidence 65557777889988866655532211 111111 2222333333322 23333 3333333 22222
Q ss_pred cCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 001184 1004 PQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDAD 1039 (1130)
Q Consensus 1004 ~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~ 1039 (1130)
...++++++. +.+|+.......+++.++.
T Consensus 611 -----a~~~tSF~v~--~~~Ll~TT~~h~l~fv~L~ 639 (928)
T PF04762_consen 611 -----ASNCTSFAVT--DSFLLFTTTQHTLKFVHLN 639 (928)
T ss_pred -----ecCCceEEEE--cCEEEEEecCceEEEEECc
Confidence 3477888875 5566666667889999988
No 227
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.53 E-value=8.4e-11 Score=134.55 Aligned_cols=199 Identities=17% Similarity=0.178 Sum_probs=149.6
Q ss_pred CEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEe
Q 001184 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAF 428 (1130)
Q Consensus 349 ~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~ 428 (1130)
.|....+.-+.+ .++.++.+..+-|||...+....... .+.. .--....-+-++++.-++++|+
T Consensus 89 wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~i~-------~~er--------~~l~~~~~~g~s~~~~~i~~gs 152 (967)
T KOG0974|consen 89 WIFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSKIQ-------SDER--------CTLYSSLIIGDSAEELYIASGS 152 (967)
T ss_pred cccccchhhhcc-eEEEEEcCceEEEEecccCceehhcC-------CCce--------EEEEeEEEEeccCcEEEEEecc
Confidence 344455555666 47888889999999998876654210 0000 0001223345677888999999
Q ss_pred CCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeee-EecCCCcCEEEEeec
Q 001184 429 TKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLF-QFEGHEAPVYSVCPH 506 (1130)
Q Consensus 429 ~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~-~~~~h~~~v~~~~~~ 506 (1130)
.-+.|.+|+....+ .. ..+.||.+.|.++.|+.||+ ++++.|+|.++|+|+ .+++.+. ...+|+.+|+.++|.
T Consensus 153 v~~~iivW~~~~dn-~p--~~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~ 227 (967)
T KOG0974|consen 153 VFGEIIVWKPHEDN-KP--IRLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFL 227 (967)
T ss_pred ccccEEEEeccccC-Cc--ceecccCCceEEEEEccCCc--EEEEEecCcceeeeecccccccCcccccccceeEEEEec
Confidence 99999999998322 11 15789999999999999999 899999999999999 6666555 677899999999997
Q ss_pred ccCCccEEEEEecCCcEEEEEccCCcceeeecCC-CccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCC
Q 001184 507 QKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP-GLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG 577 (1130)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1130)
+. .+++++.|-+.++|+.+..+.. .+..| ...+..++..++...+++++. |+.+++||+...
T Consensus 228 ~n----~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~----Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 228 PN----RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGN----DSTLKLWDLNGR 290 (967)
T ss_pred cc----eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCceEEEeecc----Ccchhhhhhhcc
Confidence 63 8999999999999976654443 44444 347899999998888888886 999999997653
No 228
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.51 E-value=2.5e-09 Score=111.32 Aligned_cols=524 Identities=14% Similarity=0.103 Sum_probs=280.3
Q ss_pred CcccceeeeccCCCCEEEEEEecCCCeEEEE----E--eCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCC
Q 001184 335 DLPRAVACTMHQGSSVVSMDFHPFHHTLLVV----G--CGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDS 408 (1130)
Q Consensus 335 ~~~~~~~~~~~h~~~V~~v~fspdg~~llas----g--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 408 (1130)
-..++..+...|-+-|+--.|+|||+.+.++ | ..-+.+.+.+.+.|+..+. ++-|
T Consensus 66 lk~g~~~ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRi------------------TyfG- 126 (668)
T COG4946 66 LKDGKPLRITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRI------------------TYFG- 126 (668)
T ss_pred hccCCeeEEecccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEE------------------EEec-
Confidence 3355666777788889999999999975442 2 2234578888888887642 1222
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCe----EEEEEecCCcc-ceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCC-----
Q 001184 409 SISVSRVAWSPDGNFIGVAFTKHL----IHLYTYQGSND-LCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK----- 478 (1130)
Q Consensus 409 ~~~V~~v~~spdg~~las~~~d~~----i~vwd~~~~~~-~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~----- 478 (1130)
...-.-.-|+|||+.|++...-.- -.+|.+..... .. .+ .-++.+.+.+- ||. ++.|-.--
T Consensus 127 r~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e---~L--nlGpathiv~~-dg~---ivigRntydLP~W 197 (668)
T COG4946 127 RRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTE---PL--NLGPATHIVIK-DGI---IVIGRNTYDLPHW 197 (668)
T ss_pred cccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceee---ec--cCCceeeEEEe-CCE---EEEccCcccCccc
Confidence 222334569999999988754322 22343332111 11 11 23445555554 343 33332111
Q ss_pred -------cEEEEe--cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcc--eeeecCCCccEEEE
Q 001184 479 -------LIRVWD--LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGS--RVDYDAPGLWCTTM 547 (1130)
Q Consensus 479 -------~v~iwd--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~ 547 (1130)
.=++|- ..|+....+..-.+.|.+-.+. .+ +.-+...-||.=.+|..+-... ......+ ...+-
T Consensus 198 K~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~PmIV--~~-RvYFlsD~eG~GnlYSvdldGkDlrrHTnFt--dYY~R 272 (668)
T COG4946 198 KGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPMIV--GE-RVYFLSDHEGVGNLYSVDLDGKDLRRHTNFT--DYYPR 272 (668)
T ss_pred ccccCCccceEEEEecCCcceeeeeecCCCcCCceEE--cc-eEEEEecccCccceEEeccCCchhhhcCCch--hcccc
Confidence 124565 2332333333223333322221 11 1222223344333443322221 1111111 12333
Q ss_pred EEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecc-----cCc--eeEE---E-EEcC-CCCEEEEEeCCCcEEEE
Q 001184 548 LYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGF-----RKK--SAGV---V-QFDT-TRNRILAAGEDNQIKFW 615 (1130)
Q Consensus 548 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~-----~~~--~v~~---~-~~~~-~~~~l~~~~~dg~i~vw 615 (1130)
..+.||+.++... .|.|++||..+..+.+.--+. ... .+.- + .|++ +|.+++..+. |...|.
T Consensus 273 ~~nsDGkrIvFq~-----~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~ 346 (668)
T COG4946 273 NANSDGKRIVFQN-----AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIM 346 (668)
T ss_pred ccCCCCcEEEEec-----CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEE
Confidence 4567999988764 678999998876554322220 000 0110 1 1222 5678888876 677777
Q ss_pred eCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCC-cEEEEEcCCCchhhhhhcccccccccccccccccccceee
Q 001184 616 DMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQ-GIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVT 694 (1130)
Q Consensus 616 d~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1130)
+...+-.++.- +...|.-..+.-+++-++.|..|| .+-|++..++. ..+ +
T Consensus 347 ~~~~~~~iqv~----~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr-~----------------------- 397 (668)
T COG4946 347 RPWDGYSIQVG----KKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKR-I----------------------- 397 (668)
T ss_pred CCCCCeeEEcC----CCCceEEEEEccCCcceEEeccCCceEEEEecCCce-EEE-e-----------------------
Confidence 76555444332 222466667777777889999998 89999987762 100 0
Q ss_pred ccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEE
Q 001184 695 TITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLL 774 (1130)
Q Consensus 695 ~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 774 (1130)
...-+.|.++.
T Consensus 398 ---------------------------------------------------------------------e~~lg~I~av~ 408 (668)
T COG4946 398 ---------------------------------------------------------------------EKDLGNIEAVK 408 (668)
T ss_pred ---------------------------------------------------------------------eCCccceEEEE
Confidence 11456788999
Q ss_pred EeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-C
Q 001184 775 YTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-G 853 (1130)
Q Consensus 775 ~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-d 853 (1130)
.+++|+.++++.....+.+.|++.+.. .... ....+-|+..+|+|+++++|.+- +
T Consensus 409 vs~dGK~~vvaNdr~el~vididngnv----------------------~~id--kS~~~lItdf~~~~nsr~iAYafP~ 464 (668)
T COG4946 409 VSPDGKKVVVANDRFELWVIDIDNGNV----------------------RLID--KSEYGLITDFDWHPNSRWIAYAFPE 464 (668)
T ss_pred EcCCCcEEEEEcCceEEEEEEecCCCe----------------------eEec--ccccceeEEEEEcCCceeEEEecCc
Confidence 999999999888777777766554322 2111 13466789999999999999985 4
Q ss_pred ----CeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEE--EecCCCCeeEEE---
Q 001184 854 ----GKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTK--LKGHQKHITGLA--- 924 (1130)
Q Consensus 854 ----g~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~--l~~h~~~V~~l~--- 924 (1130)
..|+++|+.+++...... ....-.+-+|.| ++++|..-+.-. .|....+.+.. +..|+.+-..+-
T Consensus 465 gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~-d~ryLYfLs~Rs----LdPs~Drv~fnf~f~~vskPylv~L~~g 538 (668)
T COG4946 465 GYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDP-DGRYLYFLSARS----LDPSNDRVIFNFSFQRVSKPYLVVLGRG 538 (668)
T ss_pred ceeeeeEEEEecCCCeEEEecC-CcccccCcccCC-CCcEEEEEeccc----cCCCCCeeEEEEEEeeeccceEEEecCC
Confidence 459999999987765443 344455678888 787776554221 11111121111 122222211110
Q ss_pred -EccCCCeEEE-EeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE---------------cCCc
Q 001184 925 -FSTNLNILVS-SGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN---------------HETQ 987 (1130)
Q Consensus 925 -~s~dg~~L~s-~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~---------------~d~~ 987 (1130)
.||-.+..-. -+.+|.+-+=+++. + ..++... +..-.+++--.+|+.+..+ .-|.
T Consensus 539 ~~sP~~q~p~~~~~ea~e~dle~ie~---r-~eP~pVe----e~dY~sI~~lk~~killfs~pi~Gefs~yy~gq~~kG~ 610 (668)
T COG4946 539 YYSPFNQPPDEANSEAGEVDLEGIED---R-VEPFPVE----EGDYRSIAGLKNGKILLFSYPIHGEFSQYYWGQPEKGR 610 (668)
T ss_pred CCChhhcCchhcCccccceehhhhcc---c-ccccccC----ccceeEeeecCCCeEEEEEeeccchhhhhhcCCCccce
Confidence 1221111111 12233332222222 0 1111111 1222333333444333321 2356
Q ss_pred EEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCc
Q 001184 988 LAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSL 1041 (1130)
Q Consensus 988 i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~ 1041 (1130)
+.+||+++.+.-.. ...++++..|+||+.+.. -.||.+++++++..
T Consensus 611 l~~ydletkk~~e~-------k~nvss~rlS~D~s~ilv-k~d~kl~~f~vekk 656 (668)
T COG4946 611 LEKYDLETKKVEEY-------KDNVSSFRLSSDGSKILV-KLDGKLRLFDVEKK 656 (668)
T ss_pred EEEEecchhhHHHH-------hcccceEEEcCCCCEEEE-EeCCeEEEEecccC
Confidence 77888876543221 457899999999999888 77999999999863
No 229
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=2.2e-13 Score=143.16 Aligned_cols=240 Identities=15% Similarity=0.187 Sum_probs=166.4
Q ss_pred ccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcC--CC
Q 001184 344 MHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP--DG 421 (1130)
Q Consensus 344 ~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--dg 421 (1130)
.+|.+.|.|++|+.||. +|++|+.|-.+.|||.-..+.++. +-.||.+.|.|+.|-| +.
T Consensus 47 ~GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~Kllhs------------------I~TgHtaNIFsvKFvP~tnn 107 (758)
T KOG1310|consen 47 TGHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHS------------------ISTGHTANIFSVKFVPYTNN 107 (758)
T ss_pred ccccceecceeecCCCC-EEeecCCcceEEeecchhcceeee------------------eecccccceeEEeeeccCCC
Confidence 36999999999999998 799999999999999987666553 5679999999999999 56
Q ss_pred CEEEEEeCCCeEEEEEecCCc-------cceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCC--CeeeE
Q 001184 422 NFIGVAFTKHLIHLYTYQGSN-------DLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSG--RKLFQ 492 (1130)
Q Consensus 422 ~~las~~~d~~i~vwd~~~~~-------~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~--~~~~~ 492 (1130)
+.+++|..|..|+++|+...+ ...+...+..|...|..|+-.|++.+ .+.++++||+++-+|... .+-..
T Consensus 108 riv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Ph-tfwsasEDGtirQyDiREph~c~p~ 186 (758)
T KOG1310|consen 108 RIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPH-TFWSASEDGTIRQYDIREPHVCNPD 186 (758)
T ss_pred eEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCc-eEEEecCCcceeeecccCCccCCcc
Confidence 789999999999999997522 12333456789999999999999966 899999999999999322 22111
Q ss_pred ---------ecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeee-----cCCCccEEEEE-EecCCCeEE
Q 001184 493 ---------FEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDY-----DAPGLWCTTML-YSADGSRLF 557 (1130)
Q Consensus 493 ---------~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-----~~~~~~v~~~~-~s~~~~~l~ 557 (1130)
+...--...++.++|... .+|+.|+.|-..++||.+...+...- ........++. |+|.+-
T Consensus 187 ~~~~~~l~ny~~~lielk~ltisp~rp-~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl--- 262 (758)
T KOG1310|consen 187 EDCPSILVNYNPQLIELKCLTISPSRP-YYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL--- 262 (758)
T ss_pred ccccHHHHHhchhhheeeeeeecCCCC-ceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc---
Confidence 112223456777877544 79999999999999996432222110 01111122222 122111
Q ss_pred EeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEe
Q 001184 558 SCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTE 627 (1130)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 627 (1130)
. ...+..... -...+-++|+|+|.-++..-....|+++|+..++......
T Consensus 263 -k--------------n~~gn~~~~-----~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y~ 312 (758)
T KOG1310|consen 263 -K--------------NSQGNLDRY-----ITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPYF 312 (758)
T ss_pred -c--------------Ccccccccc-----eeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceeec
Confidence 0 001111111 0135568899999877765555689999999887655543
No 230
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=3.2e-12 Score=146.19 Aligned_cols=224 Identities=15% Similarity=0.138 Sum_probs=148.5
Q ss_pred ecCCCccEEEEEEcCCCCEEEEEeCC---CeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEE
Q 001184 405 VKDSSISVSRVAWSPDGNFIGVAFTK---HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIR 481 (1130)
Q Consensus 405 ~~~h~~~V~~v~~spdg~~las~~~d---~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~ 481 (1130)
+..+...+.+.+|||||+.||..+.+ ..|.+||+.+++... +....+.+.+.+|+|||+. ++++.+.++...
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~----l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~ 265 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV----VANFKGSNSAPAWSPDGRT-LAVALSRDGNSQ 265 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEEccCCCce
Confidence 34567789999999999999987643 469999999886432 3334455678999999995 345677888777
Q ss_pred EEe--cCCCeeeEecCCCcCEEEEeecccCCccEEEEEe-cCCcEEEEEccCC-cceeeecCCCccEEEEEEecCCCeEE
Q 001184 482 VWD--LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTA-VDGKIKAWLYDNV-GSRVDYDAPGLWCTTMLYSADGSRLF 557 (1130)
Q Consensus 482 iwd--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~ 557 (1130)
||. ..+..+..+..+........|++ ||+.|+..+ .+|...+|.++.. .....+...........|+|||++++
T Consensus 266 Iy~~d~~~~~~~~lt~~~~~~~~~~wSp--DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia 343 (427)
T PRK02889 266 IYTVNADGSGLRRLTQSSGIDTEPFFSP--DGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLA 343 (427)
T ss_pred EEEEECCCCCcEECCCCCCCCcCeEEcC--CCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEE
Confidence 776 55666677766666666777754 556666555 3567777766432 22222222333345678999999999
Q ss_pred EeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCC---cEEEEeCCCCceeEEEeccCCCCC
Q 001184 558 SCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDN---QIKFWDMDNVNMLTSTEAEGGLPS 634 (1130)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~ 634 (1130)
..+.. .+...|++||+.+++......+ . ......|+|+|+.|+.++.++ .+++.+. ++.....+..+.+ .
T Consensus 344 ~~s~~-~g~~~I~v~d~~~g~~~~lt~~-~--~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g--~ 416 (427)
T PRK02889 344 YISRV-GGAFKLYVQDLATGQVTALTDT-T--RDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGG--D 416 (427)
T ss_pred EEEcc-CCcEEEEEEECCCCCeEEccCC-C--CccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCC--C
Confidence 77642 2245799999988875543322 1 235678999999888876544 3666666 4555555543322 4
Q ss_pred cceEEEcC
Q 001184 635 LPRLRFNK 642 (1130)
Q Consensus 635 i~~v~~s~ 642 (1130)
+...+|+|
T Consensus 417 ~~~p~wsp 424 (427)
T PRK02889 417 VREPSWGP 424 (427)
T ss_pred CCCCccCC
Confidence 66677776
No 231
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=6.4e-12 Score=144.56 Aligned_cols=237 Identities=13% Similarity=0.053 Sum_probs=160.5
Q ss_pred CeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeC---CCeEEEEEecCCcccee
Q 001184 370 GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFT---KHLIHLYTYQGSNDLCQ 446 (1130)
Q Consensus 370 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~---d~~i~vwd~~~~~~~~~ 446 (1130)
..|.+||....... .+..|...+.+.+|||||+.|+..+. +..|.+||+.+++..
T Consensus 182 ~~l~~~d~dg~~~~--------------------~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-- 239 (435)
T PRK05137 182 KRLAIMDQDGANVR--------------------YLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-- 239 (435)
T ss_pred eEEEEECCCCCCcE--------------------EEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE--
Confidence 47888988654432 25577889999999999999998764 468999999887642
Q ss_pred eeeeecCCCCeeEEEEecCCCceEEEEEcCCCc--EEEEecCCCeeeEecCCCcCEEEEeecccCCccEEEEEec-CC--
Q 001184 447 SLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKL--IRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAV-DG-- 521 (1130)
Q Consensus 447 ~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~--v~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg-- 521 (1130)
.+..+.+.+.+.+|+|||+. ++++.+.++. |.+||..+..+..+..+........|+| |++.|+..+. +|
T Consensus 240 --~l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~sp--DG~~i~f~s~~~g~~ 314 (435)
T PRK05137 240 --LVGNFPGMTFAPRFSPDGRK-VVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSP--DGSQIVFESDRSGSP 314 (435)
T ss_pred --EeecCCCcccCcEECCCCCE-EEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcC--CCCEEEEEECCCCCC
Confidence 24556677889999999995 3456666665 6777855556667776776667777755 5566766653 33
Q ss_pred cEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCC
Q 001184 522 KIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRN 601 (1130)
Q Consensus 522 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 601 (1130)
.|.+||+...... .+......+....|+|||+.|+..... .+...|.+||..++.. +.+... ..+....|+|||+
T Consensus 315 ~Iy~~d~~g~~~~-~lt~~~~~~~~~~~SpdG~~ia~~~~~-~~~~~i~~~d~~~~~~-~~lt~~--~~~~~p~~spDG~ 389 (435)
T PRK05137 315 QLYVMNADGSNPR-RISFGGGRYSTPVWSPRGDLIAFTKQG-GGQFSIGVMKPDGSGE-RILTSG--FLVEGPTWAPNGR 389 (435)
T ss_pred eEEEEECCCCCeE-EeecCCCcccCeEECCCCCEEEEEEcC-CCceEEEEEECCCCce-EeccCC--CCCCCCeECCCCC
Confidence 5777787654433 333334456678899999999987632 2346799999865543 333321 1356688999999
Q ss_pred EEEEEeCC------CcEEEEeCCCCceeEEEeccCCCCCcceEEEcC
Q 001184 602 RILAAGED------NQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK 642 (1130)
Q Consensus 602 ~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~ 642 (1130)
.|+..+.+ ..++++|+..+.. ..+...+ .+...+|+|
T Consensus 390 ~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~~---~~~~p~Wsp 432 (435)
T PRK05137 390 VIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTPG---DASDPAWSP 432 (435)
T ss_pred EEEEEEccCCCCCcceEEEEECCCCce-EEccCCC---CccCcccCC
Confidence 88775542 3588888876654 3443222 356667776
No 232
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=99.50 E-value=1.7e-13 Score=131.53 Aligned_cols=173 Identities=18% Similarity=0.235 Sum_probs=130.9
Q ss_pred CcchHHHHHHHHHhhhhccHHHHHHHHHHhcCCCcc---------HHHHHHHHhccCHHHHHHHhccCCCcCCCccchhh
Q 001184 2 SSLSRELVFLILQFLDEEKFKESVHRLEQESGFFFN---------MKYFEEKALAGEWDEIEKYLSGFTKVDDNRYSMKI 72 (1130)
Q Consensus 2 ~~~~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~---------~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~ 72 (1130)
+..++|+.|||+.||...||.++|..+.+|+|+..+ ...+|.+|..|+.++|++.++++..-.-+... .+
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~-~l 101 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR-EL 101 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch-hH
Confidence 346789999999999999999999999999999771 57799999999999999999998322111222 38
Q ss_pred hHHHHHhHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccccccccccccCCC--ChhHHHHHHHHHHhh
Q 001184 73 FFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD--TRSARTIMLVELKKL 150 (1130)
Q Consensus 73 ~~~i~~~~~lell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~--~~~~r~~~~~~l~~~ 150 (1130)
.|.+++|+++||+..+...+|+.|+|++|.|+...+++.++.|...|..-.++... ...... ....|.++.+.+...
T Consensus 102 ~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~-~sp~~~l~~~s~R~kvA~~vN~a 180 (228)
T KOG2659|consen 102 FFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQ-ESPSAELLSQSLRQKVASEVNSA 180 (228)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcc-cCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999887788888888887775554211 111111 245688888888776
Q ss_pred cccCcCccccccCCCCChHHHHHHHHHHHHHHHh
Q 001184 151 IEANPLFRDKLVFPSLKTSRLRTLINQSLNWQHQ 184 (1130)
Q Consensus 151 ~~~~~~~~~~~~~~~~p~~rL~~ll~qa~~~q~~ 184 (1130)
|-...- . -..++|..|++.-+..|..
T Consensus 181 iL~~~~---~-----~~~~~l~~llk~~~~~~~~ 206 (228)
T KOG2659|consen 181 ILASQE---H-----ESEPKLPFLLKLISWAQEE 206 (228)
T ss_pred HHHHhc---c-----cccchHHHHHHHHHHHHHH
Confidence 543111 0 1245788888655555533
No 233
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.50 E-value=1.5e-12 Score=137.00 Aligned_cols=118 Identities=20% Similarity=0.337 Sum_probs=106.4
Q ss_pred CCceeEEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEE
Q 001184 833 EDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKT 911 (1130)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~ 911 (1130)
.+.|...+|+|||++||+.+ ||.+||||..+.+++..++.-.+...|++||| ||++|++|++|..|.||.+...+++.
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVA 368 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVA 368 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEeccceEEE
Confidence 44788899999999999998 99999999999999988888888999999999 99999999999999999999999999
Q ss_pred EEecCCCCeeEEEEcc-----------------------------------CC-------------CeEEEEeCCCcEEE
Q 001184 912 KLKGHQKHITGLAFST-----------------------------------NL-------------NILVSSGSDAQLIF 943 (1130)
Q Consensus 912 ~l~~h~~~V~~l~~s~-----------------------------------dg-------------~~L~s~s~Dg~i~v 943 (1130)
.-.+|...|..|+|.| ++ -++.|++.|..+.+
T Consensus 369 RGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcL 448 (636)
T KOG2394|consen 369 RGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCL 448 (636)
T ss_pred eccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEE
Confidence 9999999999999972 01 25788899999999
Q ss_pred EECCCCcc
Q 001184 944 WNTDTWEK 951 (1130)
Q Consensus 944 wd~~~~~~ 951 (1130)
||+.....
T Consensus 449 WDlteD~L 456 (636)
T KOG2394|consen 449 WDLTEDVL 456 (636)
T ss_pred Eecchhhc
Confidence 99987443
No 234
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.49 E-value=1.1e-13 Score=142.98 Aligned_cols=276 Identities=16% Similarity=0.179 Sum_probs=212.9
Q ss_pred CCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEE
Q 001184 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGV 426 (1130)
Q Consensus 347 ~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las 426 (1130)
.-..+.+.|+.+|++ |+.|+..|.|..+|+.++++..... -...|..+.|-.+.+++|+
T Consensus 129 eFGPY~~~ytrnGrh-lllgGrKGHlAa~Dw~t~~L~~Ei~--------------------v~Etv~Dv~~LHneq~~AV 187 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRH-LLLGGRKGHLAAFDWVTKKLHFEIN--------------------VMETVRDVTFLHNEQFFAV 187 (545)
T ss_pred ccCCeeeeecCCccE-EEecCCccceeeeecccceeeeeee--------------------hhhhhhhhhhhcchHHHHh
Confidence 346788999999996 6778889999999999998875321 2347889999999999998
Q ss_pred EeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEee
Q 001184 427 AFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCP 505 (1130)
Q Consensus 427 ~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~ 505 (1130)
+- ...+.|||-.+ ..+. .+..| ..|..+.|.|.-- +|++++..|.++.-| ..|+.+..+..-.+.+..++-
T Consensus 188 AQ-K~y~yvYD~~G-tElH---Clk~~-~~v~rLeFLPyHf--LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~q 259 (545)
T KOG1272|consen 188 AQ-KKYVYVYDNNG-TELH---CLKRH-IRVARLEFLPYHF--LLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQ 259 (545)
T ss_pred hh-hceEEEecCCC-cEEe---ehhhc-Cchhhhcccchhh--eeeecccCCceEEEeechhhhhHHHHccCCccchhhc
Confidence 84 56799999665 3344 34433 4589999999865 899999999999999 899999999888888888877
Q ss_pred cccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEec
Q 001184 506 HQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIG 585 (1130)
Q Consensus 506 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 585 (1130)
+|-. ..+-+|...|+|.+|.....+....+..|.++|.++++.++|+|+++.|. |..+.|||++....+.++..
T Consensus 260 NP~N--aVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~----Dr~~kIWDlR~~~ql~t~~t 333 (545)
T KOG1272|consen 260 NPYN--AVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGL----DRKVKIWDLRNFYQLHTYRT 333 (545)
T ss_pred CCcc--ceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccc----ccceeEeeeccccccceeec
Confidence 6543 68889999999999999999999999999999999999999999999997 99999999998776666654
Q ss_pred ccCceeEEEEEcCCCCEEEEEeCCCcEEEEeC-CCC--ceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001184 586 FRKKSAGVVQFDTTRNRILAAGEDNQIKFWDM-DNV--NMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1130)
Q Consensus 586 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~-~~~--~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~ 661 (1130)
......+++|..| +++.+....+.||.- -.+ ..-...-.|.-...|..+.|.|-...|-+|-..|.-.|.-.
T Consensus 334 --p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVP 408 (545)
T KOG1272|consen 334 --PHPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVP 408 (545)
T ss_pred --CCCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEecc
Confidence 2256667787655 555556668999942 221 11111222222337899999997777777766665555433
No 235
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.49 E-value=1.2e-11 Score=122.45 Aligned_cols=240 Identities=16% Similarity=0.172 Sum_probs=171.4
Q ss_pred ceeEEEEecCCCEEEEEeCCeEEEEECCCceeEEEEeCCC--CCeEEEEEeCCCCcEEEEEeCC------CcEEEEEeec
Q 001184 835 VVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPP--PASTFLAFHPQDNNIIAIGMED------STIQIYNVRV 906 (1130)
Q Consensus 835 ~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~--~~i~~l~~sp~~~~~lasg~~d------g~v~iwd~~~ 906 (1130)
...+++|+.|...+++|.+...+||+.+-.+.....+.+. -.+..+-|-. +-+..+|+.+ ..|.|||=..
T Consensus 7 ~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~--N~laLVGGg~~pky~pNkviIWDD~k 84 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRS--NYLALVGGGSRPKYPPNKVIIWDDLK 84 (346)
T ss_pred ceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhhh--ceEEEecCCCCCCCCCceEEEEeccc
Confidence 3456999999999999999999999988654433222222 2233333322 2233345443 4699999767
Q ss_pred CeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEE-E-c
Q 001184 907 DEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV-N-H 984 (1130)
Q Consensus 907 ~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~-~ 984 (1130)
.+++.++. ...+|.++.+.+| ++++.- .+.|+||.....-+. .........+.+..++.-+.+..+||. | .
T Consensus 85 ~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~---l~~~et~~NPkGlC~~~~~~~k~~LafPg~k 157 (346)
T KOG2111|consen 85 ERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKL---LHVIETRSNPKGLCSLCPTSNKSLLAFPGFK 157 (346)
T ss_pred CcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhh---eeeeecccCCCceEeecCCCCceEEEcCCCc
Confidence 77787776 5688999999876 555554 567999998853211 122222233355666666666667776 3 4
Q ss_pred CCcEEEEECCCcee--eeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCc-EEEEeCCCcccccccCCCcccccCCCCCc
Q 001184 985 ETQLAIYDGSKMEC--IRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGS-IGVFDADSLRLRCRIAPSAYMSQASPNSQ 1061 (1130)
Q Consensus 985 d~~i~v~d~~~~~~--~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 1061 (1130)
-|.|+|-|+...+. ...+..| .+.|.+++.+-+|.++||+|..|+ |||||..+|..+..++... .
T Consensus 158 ~GqvQi~dL~~~~~~~p~~I~AH---~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~---------d 225 (346)
T KOG2111|consen 158 TGQVQIVDLASTKPNAPSIINAH---DSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV---------D 225 (346)
T ss_pred cceEEEEEhhhcCcCCceEEEcc---cCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC---------c
Confidence 68999999986555 2444444 899999999999999999999987 8999999999999987433 2
Q ss_pred eeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCc
Q 001184 1062 TVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETE 1096 (1130)
Q Consensus 1062 ~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~~~~ 1096 (1130)
.....+++|+| +..+|+++|+.|+|.++.+...+
T Consensus 226 ~A~iy~iaFSp-~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 226 RADIYCIAFSP-NSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred hheEEEEEeCC-CccEEEEEcCCCeEEEEEeecCC
Confidence 34466788999 57899999999999999997655
No 236
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=4.4e-12 Score=144.72 Aligned_cols=223 Identities=11% Similarity=0.075 Sum_probs=145.2
Q ss_pred eccCCCCEEEEEEecCCCeEEEEEe--CcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCC
Q 001184 343 TMHQGSSVVSMDFHPFHHTLLVVGC--GDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD 420 (1130)
Q Consensus 343 ~~~h~~~V~~v~fspdg~~llasg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 420 (1130)
...+...+.+.+|||||++++++.. .+..|.+||+.+|+... +....+.+...+||||
T Consensus 194 lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--------------------l~~~~~~~~~~~~SPD 253 (429)
T PRK03629 194 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------VASFPRHNGAPAFSPD 253 (429)
T ss_pred eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ccCCCCCcCCeEECCC
Confidence 3456778999999999997554432 24579999998886542 1122233456899999
Q ss_pred CCEEEEE-eCCC--eEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEc-CCCcEEEE--ecCCCeeeEec
Q 001184 421 GNFIGVA-FTKH--LIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCG-DDKLIRVW--DLSGRKLFQFE 494 (1130)
Q Consensus 421 g~~las~-~~d~--~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s-~d~~v~iw--d~~~~~~~~~~ 494 (1130)
|+.|+.. +.+| .|.+||+++++.. .+..+...+...+|+|||+ .|+..+ .++...|| |..+.....+.
T Consensus 254 G~~La~~~~~~g~~~I~~~d~~tg~~~----~lt~~~~~~~~~~wSPDG~--~I~f~s~~~g~~~Iy~~d~~~g~~~~lt 327 (429)
T PRK03629 254 GSKLAFALSKTGSLNLYVMDLASGQIR----QVTDGRSNNTEPTWFPDSQ--NLAYTSDQAGRPQVYKVNINGGAPQRIT 327 (429)
T ss_pred CCEEEEEEcCCCCcEEEEEECCCCCEE----EccCCCCCcCceEECCCCC--EEEEEeCCCCCceEEEEECCCCCeEEee
Confidence 9999865 3344 5889999887643 2344455688999999999 454444 34555555 55554455555
Q ss_pred CCCcCEEEEeecccCCccEEEEEecC---CcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEE
Q 001184 495 GHEAPVYSVCPHQKENIHFIFSTAVD---GKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVE 571 (1130)
Q Consensus 495 ~h~~~v~~~~~~~~~~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1130)
.+........|+ ++|+.|+..+.+ ..|.+||++++.... +.. ........|+|||++|+..+.++ +...+++
T Consensus 328 ~~~~~~~~~~~S--pDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~-~~~~~~p~~SpDG~~i~~~s~~~-~~~~l~~ 402 (429)
T PRK03629 328 WEGSQNQDADVS--SDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTD-TFLDETPSIAPNGTMVIYSSSQG-MGSVLNL 402 (429)
T ss_pred cCCCCccCEEEC--CCCCEEEEEEccCCCceEEEEECCCCCeEE-eCC-CCCCCCceECCCCCEEEEEEcCC-CceEEEE
Confidence 444455566675 455777665543 357888987765433 222 12244678999999999987532 2456888
Q ss_pred eeCCCCceeEEEecccCceeEEEEEcC
Q 001184 572 WNESEGALKRTYIGFRKKSAGVVQFDT 598 (1130)
Q Consensus 572 wd~~~~~~~~~~~~~~~~~v~~~~~~~ 598 (1130)
+++ +|...+.+.++.. .+...+|+|
T Consensus 403 ~~~-~G~~~~~l~~~~~-~~~~p~Wsp 427 (429)
T PRK03629 403 VST-DGRFKARLPATDG-QVKFPAWSP 427 (429)
T ss_pred EEC-CCCCeEECccCCC-CcCCcccCC
Confidence 887 4555666666443 566677776
No 237
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.48 E-value=1.1e-13 Score=142.94 Aligned_cols=231 Identities=14% Similarity=0.196 Sum_probs=191.2
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCe
Q 001184 410 ISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRK 489 (1130)
Q Consensus 410 ~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~ 489 (1130)
..-..+.++.+|++|+.|+..|.|-.+|..+++... .+. -...|.++.|..+.+ + ++....+.++|||..|..
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~---Ei~-v~Etv~Dv~~LHneq--~-~AVAQK~y~yvYD~~GtE 202 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHF---EIN-VMETVRDVTFLHNEQ--F-FAVAQKKYVYVYDNNGTE 202 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeee---eee-hhhhhhhhhhhcchH--H-HHhhhhceEEEecCCCcE
Confidence 356789999999999999999999999999987543 222 345699999999887 4 444567899999999999
Q ss_pred eeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEE
Q 001184 490 LFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHL 569 (1130)
Q Consensus 490 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 569 (1130)
++.++.| .+|..+.|-|.. -+|++++..|.++.-|+..++.+..+....+.+..++-+|-+..+-+|.. .|+|
T Consensus 203 lHClk~~-~~v~rLeFLPyH--fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Ghs----nGtV 275 (545)
T KOG1272|consen 203 LHCLKRH-IRVARLEFLPYH--FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHS----NGTV 275 (545)
T ss_pred Eeehhhc-Cchhhhcccchh--heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCC----CceE
Confidence 9999865 568888886544 67888999999999999999999888888888999999998888888875 9999
Q ss_pred EEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEE
Q 001184 570 VEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVV 649 (1130)
Q Consensus 570 ~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~ 649 (1130)
.+|.....+++..+..|.. +|.++++.++|.++++.|.|..++|||+++...+.++.... +...+++|..| +||
T Consensus 276 SlWSP~skePLvKiLcH~g-~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~---~a~~ls~Sqkg-lLA- 349 (545)
T KOG1272|consen 276 SLWSPNSKEPLVKILCHRG-PVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPH---PASNLSLSQKG-LLA- 349 (545)
T ss_pred EecCCCCcchHHHHHhcCC-CcceEEECCCCcEEeecccccceeEeeeccccccceeecCC---Ccccccccccc-cee-
Confidence 9999999998888888776 89999999999999999999999999999887666655422 46788888766 344
Q ss_pred EeCCCcEEEEE
Q 001184 650 TTADQGIKILA 660 (1130)
Q Consensus 650 ~~~dg~i~iw~ 660 (1130)
.+....+.||.
T Consensus 350 ~~~G~~v~iw~ 360 (545)
T KOG1272|consen 350 LSYGDHVQIWK 360 (545)
T ss_pred eecCCeeeeeh
Confidence 44556889996
No 238
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=3.6e-12 Score=146.35 Aligned_cols=238 Identities=16% Similarity=0.146 Sum_probs=156.2
Q ss_pred CeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeCC---CeEEEEEecCCcccee
Q 001184 370 GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTK---HLIHLYTYQGSNDLCQ 446 (1130)
Q Consensus 370 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d---~~i~vwd~~~~~~~~~ 446 (1130)
..|.+||...+... .+..+...+.+.+|||||+.|+..+.+ ..|.+||+.+++...
T Consensus 184 ~~l~i~D~~g~~~~--------------------~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~- 242 (433)
T PRK04922 184 YALQVADSDGYNPQ--------------------TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL- 242 (433)
T ss_pred EEEEEECCCCCCce--------------------EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-
Confidence 46899998654432 244667789999999999999988743 469999998876432
Q ss_pred eeeeecCCCCeeEEEEecCCCceEEEEEcCCC--cEEEEecCCCeeeEecCCCcCEEEEeecccCCccEEEEEe-cCCc-
Q 001184 447 SLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK--LIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTA-VDGK- 522 (1130)
Q Consensus 447 ~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~--~v~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~dg~- 522 (1130)
+..+.+...+++|+|||+. ++++.+.++ .|++||..+..+..+..+.......+|++ +++.|+..+ .+|.
T Consensus 243 ---l~~~~g~~~~~~~SpDG~~-l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~sp--DG~~l~f~sd~~g~~ 316 (433)
T PRK04922 243 ---VASFRGINGAPSFSPDGRR-LALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAP--DGKSIYFTSDRGGRP 316 (433)
T ss_pred ---eccCCCCccCceECCCCCE-EEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECC--CCCEEEEEECCCCCc
Confidence 3334455668899999995 344555555 59999954445566666666566777754 556676665 4455
Q ss_pred -EEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCC
Q 001184 523 -IKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRN 601 (1130)
Q Consensus 523 -i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 601 (1130)
|.++++.+++.. .+..........+|+|||++++.... .++...|++||+.+++......+ . ......|+|+|+
T Consensus 317 ~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~~~-~~~~~~I~v~d~~~g~~~~Lt~~--~-~~~~p~~spdG~ 391 (433)
T PRK04922 317 QIYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIAMVHG-SGGQYRIAVMDLSTGSVRTLTPG--S-LDESPSFAPNGS 391 (433)
T ss_pred eEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEEC-CCCceeEEEEECCCCCeEECCCC--C-CCCCceECCCCC
Confidence 555565554432 22233344557899999999988753 22345799999988876533222 1 234568999999
Q ss_pred EEEEEeCC---CcEEEEeCCCCceeEEEeccCCCCCcceEEEcC
Q 001184 602 RILAAGED---NQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK 642 (1130)
Q Consensus 602 ~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~ 642 (1130)
+++..+.+ +.|+++++..+ ....+..+.+ .+...+|+|
T Consensus 392 ~i~~~s~~~g~~~L~~~~~~g~-~~~~l~~~~g--~~~~p~wsp 432 (433)
T PRK04922 392 MVLYATREGGRGVLAAVSTDGR-VRQRLVSADG--EVREPAWSP 432 (433)
T ss_pred EEEEEEecCCceEEEEEECCCC-ceEEcccCCC--CCCCCccCC
Confidence 88876653 46888888544 3444433222 456677776
No 239
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=2.2e-12 Score=136.92 Aligned_cols=262 Identities=13% Similarity=0.202 Sum_probs=196.3
Q ss_pred CccceEEEEEeccCCeEEEeee-CCeEEeeecCCCCCCCCccccccc---cc----------------ccccCCCCccee
Q 001184 766 SASKVARLLYTNSGIGILALWS-NGVQKLWKWNRTEQNPSGKATAAV---AP----------------QHWQPSNGLLMT 825 (1130)
Q Consensus 766 ~~~~i~~l~~s~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~---~~----------------~~w~~~~~~~~~ 825 (1130)
+....+.+..+|||+++++.|. --.|++||+..-+........+.. .+ .-+....|.-..
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~ 129 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYR 129 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeee
Confidence 6667788999999999988877 689999998765433222111111 00 001122222222
Q ss_pred ccCCCCCCCceeEEEEe-cCCCEEEEEeCCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEe
Q 001184 826 NDVPENAEDVVPCVALS-KNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNV 904 (1130)
Q Consensus 826 ~~~~~~~~~~i~~l~~s-~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~ 904 (1130)
..++ ..-..++++ +...++++|+...|+-++++.|+.+..+....+.+.++..++ -..+|++|+.+|.|..||.
T Consensus 130 ~RIP----~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~-~hgLla~Gt~~g~VEfwDp 204 (703)
T KOG2321|consen 130 TRIP----KFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINE-EHGLLACGTEDGVVEFWDP 204 (703)
T ss_pred eecC----cCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecC-ccceEEecccCceEEEecc
Confidence 2121 122334443 455667777788899999999999999998889999999999 8889999999999999999
Q ss_pred ecCeEEEEEe------cCCCC-----eeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEE
Q 001184 905 RVDEVKTKLK------GHQKH-----ITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQF 973 (1130)
Q Consensus 905 ~~~~~~~~l~------~h~~~-----V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 973 (1130)
.+...+.++. .|.+. |+++.|+.||-.+++|+.+|.+.|||+.+.+ ++....+....++..+.|
T Consensus 205 R~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~-----pl~~kdh~~e~pi~~l~~ 279 (703)
T KOG2321|consen 205 RDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK-----PLLVKDHGYELPIKKLDW 279 (703)
T ss_pred hhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC-----ceeecccCCccceeeecc
Confidence 8876665553 34343 9999999999999999999999999999843 445555666688999999
Q ss_pred cCC--CcEEEEEcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCc
Q 001184 974 HSD--QVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSL 1041 (1130)
Q Consensus 974 s~d--~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~ 1041 (1130)
-+. +..+++.+...++|||-.+|+....+.+. ..++.+|+-|++.++++|-++..+..|-+...
T Consensus 280 ~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt----~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 280 QDTDQQNKVVSMDKRILKIWDECTGKPMASIEPT----SDLNDFCFVPGSGMFFTANESSKMHTYYIPSL 345 (703)
T ss_pred cccCCCceEEecchHHhhhcccccCCceeecccc----CCcCceeeecCCceEEEecCCCcceeEEcccc
Confidence 665 55677777888999999999999888775 46999999999999999999888887766543
No 240
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=8.2e-12 Score=142.78 Aligned_cols=225 Identities=17% Similarity=0.141 Sum_probs=144.3
Q ss_pred eeccCCCCEEEEEEecCCCeEEEEEeCc--CeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcC
Q 001184 342 CTMHQGSSVVSMDFHPFHHTLLVVGCGD--GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP 419 (1130)
Q Consensus 342 ~~~~h~~~V~~v~fspdg~~llasg~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp 419 (1130)
....+...+.+.+|||||++++++...+ ..|.+||+.+++... +....+.+.+.+|||
T Consensus 190 ~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~--------------------l~~~~g~~~~~~~SP 249 (427)
T PRK02889 190 SALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV--------------------VANFKGSNSAPAWSP 249 (427)
T ss_pred EeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE--------------------eecCCCCccceEECC
Confidence 3446788999999999999744443222 459999999887543 222334567899999
Q ss_pred CCCEEEE-EeCCCeEEEEEe--cCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe--cCCCeeeEec
Q 001184 420 DGNFIGV-AFTKHLIHLYTY--QGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQFE 494 (1130)
Q Consensus 420 dg~~las-~~~d~~i~vwd~--~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd--~~~~~~~~~~ 494 (1130)
||+.|+. .+.++...||.+ .++. .. .+..+.+.+....|+|||+. +++++..++...||. ..+.....+.
T Consensus 250 DG~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~-l~f~s~~~g~~~Iy~~~~~~g~~~~lt 324 (427)
T PRK02889 250 DGRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSPDGRS-IYFTSDRGGAPQIYRMPASGGAAQRVT 324 (427)
T ss_pred CCCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcCCCCE-EEEEecCCCCcEEEEEECCCCceEEEe
Confidence 9998875 567777666665 4433 22 34556666778899999995 233444456667776 3444333333
Q ss_pred CCCcCEEEEeecccCCccEEEEEecCC---cEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEE
Q 001184 495 GHEAPVYSVCPHQKENIHFIFSTAVDG---KIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVE 571 (1130)
Q Consensus 495 ~h~~~v~~~~~~~~~~~~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1130)
.+.......+|+ ++|+.|+..+.++ .|.+||+.+++...... ........|+|||++|+..+.. .+...+++
T Consensus 325 ~~g~~~~~~~~S--pDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~spdg~~l~~~~~~-~g~~~l~~ 399 (427)
T PRK02889 325 FTGSYNTSPRIS--PDGKLLAYISRVGGAFKLYVQDLATGQVTALTD--TTRDESPSFAPNGRYILYATQQ-GGRSVLAA 399 (427)
T ss_pred cCCCCcCceEEC--CCCCEEEEEEccCCcEEEEEEECCCCCeEEccC--CCCccCceECCCCCEEEEEEec-CCCEEEEE
Confidence 233333455664 5667887766554 69999998766443222 2234678999999999988753 23456777
Q ss_pred eeCCCCceeEEEecccCceeEEEEEcC
Q 001184 572 WNESEGALKRTYIGFRKKSAGVVQFDT 598 (1130)
Q Consensus 572 wd~~~~~~~~~~~~~~~~~v~~~~~~~ 598 (1130)
.+. ++...+.+..+.. .+...+|+|
T Consensus 400 ~~~-~g~~~~~l~~~~g-~~~~p~wsp 424 (427)
T PRK02889 400 VSS-DGRIKQRLSVQGG-DVREPSWGP 424 (427)
T ss_pred EEC-CCCceEEeecCCC-CCCCCccCC
Confidence 776 4555555544322 455566766
No 241
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.46 E-value=3.4e-12 Score=134.48 Aligned_cols=252 Identities=12% Similarity=0.121 Sum_probs=163.8
Q ss_pred CEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEE-----cCCCCE
Q 001184 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAW-----SPDGNF 423 (1130)
Q Consensus 349 ~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~-----spdg~~ 423 (1130)
.++...++-.|+++.+-- ...+++|+...+..... ++....+++. .-+|=+| .|+|--
T Consensus 125 ~~~~~~~~~~gd~lcFnv--g~~lyv~~~~g~~~~~~-------------pi~k~~y~gt--~P~cHdfn~~~a~~~g~d 187 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNV--GRELYVYSYRGAADLSK-------------PIDKREYKGT--SPTCHDFNSFTATPKGLD 187 (636)
T ss_pred ceeeccccCCCCEEEEec--CCeEEEEEccCcchhcc-------------chhhhcccCC--CCceecccccccCCCCcc
Confidence 456666677777755433 34789999886443321 1111122222 2233333 456777
Q ss_pred EEEEeCCCeEEEEEecCCccceeeeeeec--CCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEecCCCcCEE
Q 001184 424 IGVAFTKHLIHLYTYQGSNDLCQSLEIDA--HVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVY 501 (1130)
Q Consensus 424 las~~~d~~i~vwd~~~~~~~~~~~~~~~--h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~~h~~~v~ 501 (1130)
|..|-..|.|.+.|....+ +...+.... ....|+++.|-|.+.. .++.+-.+|.+.++|.. +....+
T Consensus 188 llIGf~tGqvq~idp~~~~-~sklfne~r~i~ktsvT~ikWvpg~~~-~Fl~a~~sGnlyly~~~---------~~~~~t 256 (636)
T KOG2394|consen 188 LLIGFTTGQVQLIDPINFE-VSKLFNEERLINKSSVTCIKWVPGSDS-LFLVAHASGNLYLYDKE---------IVCGAT 256 (636)
T ss_pred eEEeeccCceEEecchhhH-HHHhhhhcccccccceEEEEEEeCCCc-eEEEEEecCceEEeecc---------ccccCC
Confidence 8888888999999876622 222111111 2467999999998876 57777789999999851 111222
Q ss_pred EEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeE
Q 001184 502 SVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKR 581 (1130)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 581 (1130)
..++..-.++..+......+. .+...+..+......|...+|+|||++||+.+. ||.++|+|..+.+++.
T Consensus 257 ~p~~~~~k~~~~f~i~t~ksk------~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSq----DGfLRvF~fdt~eLlg 326 (636)
T KOG2394|consen 257 APSYQALKDGDQFAILTSKSK------KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQ----DGFLRIFDFDTQELLG 326 (636)
T ss_pred CCcccccCCCCeeEEeeeecc------ccCCccceeEeccccccceeEcCCCceEEEEec----CceEEEeeccHHHHHH
Confidence 222222222233322211110 111233333334457999999999999999986 9999999999888776
Q ss_pred EEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEc
Q 001184 582 TYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFN 641 (1130)
Q Consensus 582 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s 641 (1130)
.++..-+ ...|++|+|||++|++|++|.-|.||.+..++.+..-. +|...|..|+|.
T Consensus 327 ~mkSYFG-GLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGq--GHkSWVs~VaFD 383 (636)
T KOG2394|consen 327 VMKSYFG-GLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQ--GHKSWVSVVAFD 383 (636)
T ss_pred HHHhhcc-ceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecc--ccccceeeEeec
Confidence 6655444 78999999999999999999999999999988877655 445589999998
No 242
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=7e-12 Score=144.01 Aligned_cols=226 Identities=14% Similarity=0.114 Sum_probs=144.7
Q ss_pred eeeeccCCCCEEEEEEecCCCeEEEEEeC--cCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEE
Q 001184 340 VACTMHQGSSVVSMDFHPFHHTLLVVGCG--DGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAW 417 (1130)
Q Consensus 340 ~~~~~~h~~~V~~v~fspdg~~llasg~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 417 (1130)
......|...+.+.+|||||++++++... +..|.+||+.+++... +..+.+...+.+|
T Consensus 196 ~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~--------------------l~~~~g~~~~~~~ 255 (433)
T PRK04922 196 PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL--------------------VASFRGINGAPSF 255 (433)
T ss_pred ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE--------------------eccCCCCccCceE
Confidence 33444577889999999999964444322 3469999998876542 2233344567899
Q ss_pred cCCCCEEEE-EeCCC--eEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEE-cCCCc--EEEEecCCCeee
Q 001184 418 SPDGNFIGV-AFTKH--LIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTC-GDDKL--IRVWDLSGRKLF 491 (1130)
Q Consensus 418 spdg~~las-~~~d~--~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~-s~d~~--v~iwd~~~~~~~ 491 (1130)
||||+.|+. .+.++ .|.+||+.+++.. .+..+.......+|+|||+. ++.+ ..++. |.++|..+....
T Consensus 256 SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~----~lt~~~~~~~~~~~spDG~~--l~f~sd~~g~~~iy~~dl~~g~~~ 329 (433)
T PRK04922 256 SPDGRRLALTLSRDGNPEIYVMDLGSRQLT----RLTNHFGIDTEPTWAPDGKS--IYFTSDRGGRPQIYRVAASGGSAE 329 (433)
T ss_pred CCCCCEEEEEEeCCCCceEEEEECCCCCeE----ECccCCCCccceEECCCCCE--EEEEECCCCCceEEEEECCCCCeE
Confidence 999998864 44555 5999999887632 24556556678999999994 4444 34555 566664443344
Q ss_pred EecCCCcCEEEEeecccCCccEEEEEecCC---cEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcE
Q 001184 492 QFEGHEAPVYSVCPHQKENIHFIFSTAVDG---KIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSH 568 (1130)
Q Consensus 492 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 568 (1130)
.+..+.......+|+| +++.|+..+.++ .|.+||+.++... .+. +........|+|||++++..+.. .+...
T Consensus 330 ~lt~~g~~~~~~~~Sp--DG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~-~g~~~ 404 (433)
T PRK04922 330 RLTFQGNYNARASVSP--DGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATRE-GGRGV 404 (433)
T ss_pred EeecCCCCccCEEECC--CCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEec-CCceE
Confidence 4433334444567754 556777655433 5899998776544 332 22234567999999999887643 34668
Q ss_pred EEEeeCCCCceeEEEecccCceeEEEEEcC
Q 001184 569 LVEWNESEGALKRTYIGFRKKSAGVVQFDT 598 (1130)
Q Consensus 569 i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 598 (1130)
|++++.. +...+.+..+. +.+...+|+|
T Consensus 405 L~~~~~~-g~~~~~l~~~~-g~~~~p~wsp 432 (433)
T PRK04922 405 LAAVSTD-GRVRQRLVSAD-GEVREPAWSP 432 (433)
T ss_pred EEEEECC-CCceEEcccCC-CCCCCCccCC
Confidence 9999985 44444444322 2455556665
No 243
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.44 E-value=5.5e-10 Score=117.71 Aligned_cols=345 Identities=11% Similarity=0.147 Sum_probs=207.8
Q ss_pred EEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEE
Q 001184 524 KAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRI 603 (1130)
Q Consensus 524 ~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 603 (1130)
.+|+..+......+....-++..+++||.|++|++.. ...|.+|+...+..+..+.. . .|.-+.|+|.+++|
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~-----~~~V~~~~g~~~~~l~~~~~--~-~V~~~~fSP~~kYL 86 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEH-----AAGVECWGGPSKAKLVRFRH--P-DVKYLDFSPNEKYL 86 (561)
T ss_pred EeecCccccccccccccCcchhheeecCcchheehhh-----ccceEEccccchhheeeeec--C-CceecccCccccee
Confidence 3455444444444454666889999999999999876 45699999877765555542 2 68889999999999
Q ss_pred EEEeCC---------------CcEEEEeCCCCceeEEEeccCCCCCcc-eEEEcCCCCEEEEEeCCCcEEEEEcCCCchh
Q 001184 604 LAAGED---------------NQIKFWDMDNVNMLTSTEAEGGLPSLP-RLRFNKEGNLLVVTTADQGIKILANADGLRA 667 (1130)
Q Consensus 604 ~~~~~d---------------g~i~vwd~~~~~~~~~~~~~~~~~~i~-~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 667 (1130)
.+-+.. +.+.+||..+|..+..+.......... -+.|+-+.+++|-. -...+.|+++.....
T Consensus 87 ~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n~~- 164 (561)
T COG5354 87 VTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEITDNIE- 164 (561)
T ss_pred eeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEecCCccc-
Confidence 986543 349999999999998887665432234 67888888777655 345788888622210
Q ss_pred hhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeec
Q 001184 668 LRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELT 747 (1130)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~ 747 (1130)
.+ |- .
T Consensus 165 -----~~-----------------------p~---------------------------------------~-------- 169 (561)
T COG5354 165 -----EH-----------------------PF---------------------------------------K-------- 169 (561)
T ss_pred -----cC-----------------------ch---------------------------------------h--------
Confidence 00 00 0
Q ss_pred cccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceecc
Q 001184 748 EIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTND 827 (1130)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 827 (1130)
.-....|..+.++|.|+ ...+..|.... +
T Consensus 170 ----------------~lr~~gi~dFsisP~~n-------~~~la~~tPEk----------------------~------ 198 (561)
T COG5354 170 ----------------NLRPVGILDFSISPEGN-------HDELAYWTPEK----------------------L------ 198 (561)
T ss_pred ----------------hccccceeeEEecCCCC-------CceEEEEcccc----------------------C------
Confidence 00112344555555541 11122221110 0
Q ss_pred CCCCCCCceeEEEEecCCCEEEEEeCCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEE-----------eCC
Q 001184 828 VPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIG-----------MED 896 (1130)
Q Consensus 828 ~~~~~~~~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg-----------~~d 896 (1130)
+..+.+++|.+..+..+.+-....-.-..+.|.+ .|.+|.+- ...
T Consensus 199 -----------------------~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~-~g~~ll~l~~t~~ksnKsyfge 254 (561)
T COG5354 199 -----------------------NKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQV-LGKYLLVLVMTHTKSNKSYFGE 254 (561)
T ss_pred -----------------------CCCcEEEEEEccCCCeeeeeeeEeecccEEEEec-CCceEEEEEEEeeecccceecc
Confidence 0012233333322222221111111111223333 22211110 013
Q ss_pred CcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEe--CCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEc
Q 001184 897 STIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSG--SDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFH 974 (1130)
Q Consensus 897 g~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s--~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 974 (1130)
..++|+++....+... ..-.++|...+|.|+++.+++.+ .+..+.++|+..+ .....+.. .-..+.|+
T Consensus 255 snLyl~~~~e~~i~V~-~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-----l~~~~Pe~----~rNT~~fs 324 (561)
T COG5354 255 SNLYLLRITERSIPVE-KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-----LRFYFPEQ----KRNTIFFS 324 (561)
T ss_pred ceEEEEeeccccccee-ccccccceeeeecccCCceeEEecccccceeecccccc-----eEEecCCc----cccccccc
Confidence 4688888874433222 25578999999999998877766 5788999999874 22222222 22457899
Q ss_pred CCCcEEEE-E---cCCcEEEEECCCceeee-eeecCCCCCCCeEEEEECCCCCEEEEEe------CCCcEEEEeCCCccc
Q 001184 975 SDQVRLLV-N---HETQLAIYDGSKMECIR-QWVPQDVLSSPISSAAYSCNSQLIYATF------TDGSIGVFDADSLRL 1043 (1130)
Q Consensus 975 ~d~~~l~~-~---~d~~i~v~d~~~~~~~~-~~~~~~~~~~~v~~v~~s~dg~~l~t~~------~Dg~i~vwd~~~~~~ 1043 (1130)
|.+++++. + ..+.+-+||....-.+. .+.+. ..+-+.|||||+++.+.. .|..|.|||+.....
T Consensus 325 p~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~-----n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~ 399 (561)
T COG5354 325 PHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL-----NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKV 399 (561)
T ss_pred CcccEEEEecCCccccceEEeccCCceEEEEEeecC-----CceEeeccCCceEEEecCCCcccccCcceEEEEecCchh
Confidence 99999887 3 25789999988655444 55443 566788999999888776 378899999975543
No 244
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.44 E-value=1.2e-11 Score=125.80 Aligned_cols=272 Identities=13% Similarity=0.170 Sum_probs=191.6
Q ss_pred CCCCEEEEEEecCCCeEEEEEe-CcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGC-GDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 424 (1130)
...+|+.++|--|++.=+..+. .|..+...+......... .|+.. ......+.|..++.. || .|
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~----~~~~~---------~~~l~~~~I~gl~~~-dg-~L 118 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS----LDDAK---------TVSLGTKSIKGLKLA-DG-TL 118 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccc----ccccc---------ccccccccccchhhc-CC-EE
Confidence 4567888888877764344444 666777777766555432 13222 233445566666654 33 67
Q ss_pred EEEeCCCeEEEEEecCCccce-eeeeeecCCCCeeEEEEecCCCceEEEEEcCC--CcEEEEe-cCCCeeeEec------
Q 001184 425 GVAFTKHLIHLYTYQGSNDLC-QSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDD--KLIRVWD-LSGRKLFQFE------ 494 (1130)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~-~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d--~~v~iwd-~~~~~~~~~~------ 494 (1130)
.+|-.+|.+.+|..+.+..-. ....+.. ...+..+.-++...+ ++++||.. +.+.||| ...+.+..-+
T Consensus 119 itc~~sG~l~~~~~k~~d~hss~l~~la~-g~g~~~~r~~~~~p~-Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~ 196 (412)
T KOG3881|consen 119 ITCVSSGNLQVRHDKSGDLHSSKLIKLAT-GPGLYDVRQTDTDPY-IVATGGKENINELKIWDLEQSKQIWSAKNVPNDR 196 (412)
T ss_pred EEEecCCcEEEEeccCCccccccceeeec-CCceeeeccCCCCCc-eEecCchhcccceeeeecccceeeeeccCCCCcc
Confidence 777889999999998543211 1112332 355777777777765 67779999 8999999 5554444322
Q ss_pred -CCCcCE--EEEeecccCCccEEEEEecCCcEEEEEccCCcce-eeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEE
Q 001184 495 -GHEAPV--YSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSR-VDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLV 570 (1130)
Q Consensus 495 -~h~~~v--~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1130)
+-.-+| +++.|.+......|++++.-+.+++||.+..... ..+.....+++++...|+|++++++.. .+.+.
T Consensus 197 L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~----~g~l~ 272 (412)
T KOG3881|consen 197 LGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNT----KGQLA 272 (412)
T ss_pred ccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecc----cchhh
Confidence 122234 4556655544689999999999999999876544 477778889999999999999999875 88999
Q ss_pred EeeCCCCceeEE-EecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcC
Q 001184 571 EWNESEGALKRT-YIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK 642 (1130)
Q Consensus 571 ~wd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~ 642 (1130)
.+|.++++.... +.+..+ .++.+..+|..++++++|-|+.+||+|+.+.+++...-... .++++.+.+
T Consensus 273 ~FD~r~~kl~g~~~kg~tG-sirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs---~lt~il~~~ 341 (412)
T KOG3881|consen 273 KFDLRGGKLLGCGLKGITG-SIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKS---RLTFILLRD 341 (412)
T ss_pred eecccCceeeccccCCccC-CcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhc---cccEEEecC
Confidence 999999998887 565444 89999999999999999999999999999977665544333 345555544
No 245
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=2e-11 Score=140.59 Aligned_cols=225 Identities=14% Similarity=0.074 Sum_probs=147.4
Q ss_pred eeeccCCCCEEEEEEecCCCeEEEEEe--CcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEc
Q 001184 341 ACTMHQGSSVVSMDFHPFHHTLLVVGC--GDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWS 418 (1130)
Q Consensus 341 ~~~~~h~~~V~~v~fspdg~~llasg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 418 (1130)
.....|...+.+.+|||||++++++.. .+..|.+||+.+++... +..+.+.+.+.+||
T Consensus 195 ~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~--------------------l~~~~g~~~~~~~S 254 (435)
T PRK05137 195 RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL--------------------VGNFPGMTFAPRFS 254 (435)
T ss_pred EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE--------------------eecCCCcccCcEEC
Confidence 334468889999999999997544432 24689999999886542 33455677889999
Q ss_pred CCCCEEEE-EeCCCe--EEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEc-CCC--cEEEEecCCCeeeE
Q 001184 419 PDGNFIGV-AFTKHL--IHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCG-DDK--LIRVWDLSGRKLFQ 492 (1130)
Q Consensus 419 pdg~~las-~~~d~~--i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s-~d~--~v~iwd~~~~~~~~ 492 (1130)
|||+.|+. .+.++. |.+||+.++... .+..+.+.....+|+|||+. ++..+ .++ .|.+||..+.....
T Consensus 255 PDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~Lt~~~~~~~~~~~spDG~~--i~f~s~~~g~~~Iy~~d~~g~~~~~ 328 (435)
T PRK05137 255 PDGRKVVMSLSQGGNTDIYTMDLRSGTTT----RLTDSPAIDTSPSYSPDGSQ--IVFESDRSGSPQLYVMNADGSNPRR 328 (435)
T ss_pred CCCCEEEEEEecCCCceEEEEECCCCceE----EccCCCCccCceeEcCCCCE--EEEEECCCCCCeEEEEECCCCCeEE
Confidence 99998764 445554 777788877532 35556666788999999995 44443 333 67888866665666
Q ss_pred ecCCCcCEEEEeecccCCccEEEEEecC---CcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCC--c
Q 001184 493 FEGHEAPVYSVCPHQKENIHFIFSTAVD---GKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGD--S 567 (1130)
Q Consensus 493 ~~~h~~~v~~~~~~~~~~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~--~ 567 (1130)
+..+...+....|+| +++.|+..+.+ ..|.+||+...... .+. ....+....|+|||+.|+..+...... .
T Consensus 329 lt~~~~~~~~~~~Sp--dG~~ia~~~~~~~~~~i~~~d~~~~~~~-~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~ 404 (435)
T PRK05137 329 ISFGGGRYSTPVWSP--RGDLIAFTKQGGGQFSIGVMKPDGSGER-ILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAP 404 (435)
T ss_pred eecCCCcccCeEECC--CCCEEEEEEcCCCceEEEEEECCCCceE-ecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcc
Confidence 655555666677754 55677766543 35777887554332 222 223467889999999998876432221 4
Q ss_pred EEEEeeCCCCceeEEEecccCceeEEEEEcC
Q 001184 568 HLVEWNESEGALKRTYIGFRKKSAGVVQFDT 598 (1130)
Q Consensus 568 ~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 598 (1130)
.|+++|+..+.. +.+.. ...+...+|+|
T Consensus 405 ~L~~~dl~g~~~-~~l~~--~~~~~~p~Wsp 432 (435)
T PRK05137 405 KLYTVDLTGRNE-REVPT--PGDASDPAWSP 432 (435)
T ss_pred eEEEEECCCCce-EEccC--CCCccCcccCC
Confidence 788888866544 33332 21344455655
No 246
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.42 E-value=1.3e-11 Score=123.09 Aligned_cols=341 Identities=13% Similarity=0.205 Sum_probs=217.2
Q ss_pred ceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEe-CCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcE
Q 001184 578 ALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWD-MDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGI 656 (1130)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd-~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i 656 (1130)
..++.++|+.+ .++....-|..+-+++.++|.+++||- .+.++.-..+... ...+++++.+.++...|++|-..|++
T Consensus 15 ~ll~~~eG~~d-~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~-mP~~~~~~~y~~e~~~L~vg~~ngtv 92 (404)
T KOG1409|consen 15 ELLSKIEGSQD-DVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHY-MPSPCSAMEYVSESRRLYVGQDNGTV 92 (404)
T ss_pred hhhhhhcCchh-hhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhh-CCCCceEeeeeccceEEEEEEecceE
Confidence 34566777666 566666677778899999999999995 4455554444333 23478999999999999999999998
Q ss_pred EEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccc
Q 001184 657 KILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLED 736 (1130)
Q Consensus 657 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (1130)
.-+.+.........+
T Consensus 93 tefs~sedfnkm~~~----------------------------------------------------------------- 107 (404)
T KOG1409|consen 93 TEFALSEDFNKMTFL----------------------------------------------------------------- 107 (404)
T ss_pred EEEEhhhhhhhcchh-----------------------------------------------------------------
Confidence 877664432111100
Q ss_pred cCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccc
Q 001184 737 ISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHW 816 (1130)
Q Consensus 737 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w 816 (1130)
+.| ..|..++..+.|+-.-.++++.+.|..+.-.-...
T Consensus 108 -----r~~-------------------~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~------------------ 145 (404)
T KOG1409|consen 108 -----KDY-------------------LAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTES------------------ 145 (404)
T ss_pred -----hhh-------------------hhhhcceeeEEecCCceeEEEeccccceEEEeecc------------------
Confidence 001 23778888889988888899988886664321111
Q ss_pred cCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEEE--ECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEE
Q 001184 817 QPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLF--NMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIG 893 (1130)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iw--d~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg 893 (1130)
|..+.... .....+++.+.-. +...|. .|.|..- ..+....+.++.+|.+.+++++|.+ ...+|.+|
T Consensus 146 ----~~~lg~Y~---~~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg 215 (404)
T KOG1409|consen 146 ----GNRLGGYN---FETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSG 215 (404)
T ss_pred ----CCcccceE---eeccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEec
Confidence 11100000 0001111111111 333333 3555444 3456678889999999999999999 88999999
Q ss_pred eCCCcEEEEEeecCeE-EEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEe--------------
Q 001184 894 MEDSTIQIYNVRVDEV-KTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQ-------------- 958 (1130)
Q Consensus 894 ~~dg~v~iwd~~~~~~-~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~-------------- 958 (1130)
..|..|.+||+...+- ...+.+|.+.|..+...+--+.|++++.||.|.+|+.+....+......
T Consensus 216 ~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn 295 (404)
T KOG1409|consen 216 ASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWN 295 (404)
T ss_pred cccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHH
Confidence 9999999999986543 4568899999999999988999999999999999999874433211100
Q ss_pred -----------ccCCCC---CCCeEEEEEcCCCcEEEEEcCCcEEEEECCC-----c--eeeeeeecCCCCCCCeEEEEE
Q 001184 959 -----------LPAGKL---PVGETRVQFHSDQVRLLVNHETQLAIYDGSK-----M--ECIRQWVPQDVLSSPISSAAY 1017 (1130)
Q Consensus 959 -----------~~~~~~---~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~-----~--~~~~~~~~~~~~~~~v~~v~~ 1017 (1130)
+..++- ...+...+-+....+...+..-.+|+.|.-- . ..+..+ +.....|++|.+
T Consensus 296 ~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~p---hei~tgItamhl 372 (404)
T KOG1409|consen 296 FRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIP---HEIKTGITAMHL 372 (404)
T ss_pred HHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccc---cccccceeEEEh
Confidence 000000 0111112222222222223333455544321 1 112222 122458999999
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCC
Q 001184 1018 SCNSQLIYATFTDGSIGVFDADS 1040 (1130)
Q Consensus 1018 s~dg~~l~t~~~Dg~i~vwd~~~ 1040 (1130)
-.+-.+|+|++.|..|+|||+..
T Consensus 373 qetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 373 QETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred hhhccceeecCCceEEEEEechh
Confidence 99999999999999999999863
No 247
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=8.9e-11 Score=125.26 Aligned_cols=278 Identities=13% Similarity=0.181 Sum_probs=181.4
Q ss_pred CCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEE
Q 001184 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGV 426 (1130)
Q Consensus 347 ~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las 426 (1130)
...++..++|++|+ ++|.+ .+..|+|++..++..+.. .....+.++.|||-|.+|.+
T Consensus 34 ~~~~~v~~~S~~G~-lfA~~-~~~~v~i~~~~~~~~~lt---------------------~~~~~~~~L~fSP~g~yL~T 90 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGR-LFAYS-DNQVVKVFEIATLKVVLC---------------------VELKKTYDLLFSPKGNYLLT 90 (566)
T ss_pred CCcceeEEEcCCCc-EEEEE-cCCeEEEEEccCCcEEEE---------------------eccceeeeeeeccccccccc
Confidence 34578889999998 46654 567999999988864321 11226899999999999976
Q ss_pred E-----eCC-----CeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEecCC
Q 001184 427 A-----FTK-----HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGH 496 (1130)
Q Consensus 427 ~-----~~d-----~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~~h 496 (1130)
- ..+ ..+.+|+++++.... .+......-++..|+.|.. ++.=-..+.+++|+..+-....-.-|
T Consensus 91 ~e~~~i~~~~~~~~pn~~v~~vet~~~~s---~~q~k~Q~~W~~qfs~dEs---l~arlv~nev~f~~~~~f~~~~~kl~ 164 (566)
T KOG2315|consen 91 WEPWAIYGPKNASNPNVLVYNVETGVQRS---QIQKKMQNGWVPQFSIDES---LAARLVSNEVQFYDLGSFKTIQHKLS 164 (566)
T ss_pred ccccccccCCCCCCCceeeeeeccceehh---heehhhhcCcccccccchh---hhhhhhcceEEEEecCCccceeeeee
Confidence 2 122 347799999943222 2222222237899999987 33333345788888333222222234
Q ss_pred CcCEEEEeecccCCccEEEEE-----ecCCcEEEEE--------------------------------------------
Q 001184 497 EAPVYSVCPHQKENIHFIFST-----AVDGKIKAWL-------------------------------------------- 527 (1130)
Q Consensus 497 ~~~v~~~~~~~~~~~~~l~s~-----s~dg~i~vwd-------------------------------------------- 527 (1130)
...|..+.++|.+....+++- |.-+.|++|.
T Consensus 165 ~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn 244 (566)
T KOG2315|consen 165 VSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTN 244 (566)
T ss_pred ccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCC
Confidence 555666666555333333321 2223344443
Q ss_pred -------------ccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEE
Q 001184 528 -------------YDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVV 594 (1130)
Q Consensus 528 -------------~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~ 594 (1130)
++.....+.+ ...++|.++.|+|+|+.++++.. -.-..+.++|++ +.++..+. .++-+++
T Consensus 245 ~SYYGEq~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyG--fMPAkvtifnlr-~~~v~df~---egpRN~~ 317 (566)
T KOG2315|consen 245 ASYYGEQTLYLLATQGESVSVPL-LKEGPVHDVTWSPSGREFAVVYG--FMPAKVTIFNLR-GKPVFDFP---EGPRNTA 317 (566)
T ss_pred ccccccceEEEEEecCceEEEec-CCCCCceEEEECCCCCEEEEEEe--cccceEEEEcCC-CCEeEeCC---CCCccce
Confidence 2211111111 23568999999999998887642 235688999975 55555553 2256678
Q ss_pred EEcCCCCEEEEEeC---CCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeC------CCcEEEEEcCCC
Q 001184 595 QFDTTRNRILAAGE---DNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTA------DQGIKILANADG 664 (1130)
Q Consensus 595 ~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~------dg~i~iw~~~~~ 664 (1130)
-|+|.|++++.+|. .|.|-|||+.+.+++..+.... -+-+.|+|||+++++++. |+.++||+....
T Consensus 318 ~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~----tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 318 FFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN----TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred EECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC----ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 89999999998775 4889999999988888877553 477899999999999875 688999998554
No 248
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.41 E-value=2.3e-09 Score=119.04 Aligned_cols=206 Identities=16% Similarity=0.229 Sum_probs=134.3
Q ss_pred ceeEEEEecCCCEEEEEe--CCeEEEEECCC-ceeEEE---Ee----------CCCCCeEEEEEeCCCCcEEEEEe-CCC
Q 001184 835 VVPCVALSKNDSYVMSAG--GGKVSLFNMMN-FKVMTT---FM----------SPPPASTFLAFHPQDNNIIAIGM-EDS 897 (1130)
Q Consensus 835 ~i~~l~~s~dg~~la~~~--dg~i~iwd~~~-~~~~~~---~~----------~~~~~i~~l~~sp~~~~~lasg~-~dg 897 (1130)
....++++|++++|+++. +|.|.++++.. +..... +. .......++.|+| +++++++.+ ...
T Consensus 88 ~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D 166 (345)
T PF10282_consen 88 SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGAD 166 (345)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTT
T ss_pred CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCC
Confidence 345688888888888886 68888888876 333222 11 1234578999999 777666654 345
Q ss_pred cEEEEEeecCe--EE--EEEe-cCCCCeeEEEEccCCCeEEEEeC-CCcEEEEECC--CCcccceeeEecc-CCCC-CCC
Q 001184 898 TIQIYNVRVDE--VK--TKLK-GHQKHITGLAFSTNLNILVSSGS-DAQLIFWNTD--TWEKRKSIAIQLP-AGKL-PVG 967 (1130)
Q Consensus 898 ~v~iwd~~~~~--~~--~~l~-~h~~~V~~l~~s~dg~~L~s~s~-Dg~i~vwd~~--~~~~~~~~~~~~~-~~~~-~~~ 967 (1130)
.|++|++.... +. ..+. .....-..++|+||++++....+ +++|.++++. .+........... .... ...
T Consensus 167 ~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 246 (345)
T PF10282_consen 167 RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENA 246 (345)
T ss_dssp EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSS
T ss_pred EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCC
Confidence 79999998654 32 2232 23344688999999998877665 7789999998 3322222112211 1111 136
Q ss_pred eEEEEEcCCCcEEEEE--cCCcEEEEECC--Cc--eeeeeeecCCCCCCCeEEEEECCCCCEEEEEe-CCCcEEEEeC--
Q 001184 968 ETRVQFHSDQVRLLVN--HETQLAIYDGS--KM--ECIRQWVPQDVLSSPISSAAYSCNSQLIYATF-TDGSIGVFDA-- 1038 (1130)
Q Consensus 968 v~~~~~s~d~~~l~~~--~d~~i~v~d~~--~~--~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~-~Dg~i~vwd~-- 1038 (1130)
...++++|||++|.++ ..+.|.+|++. ++ +.+..+... ......++++|||++|+++. .++.|.+|++
T Consensus 247 ~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~---G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 247 PAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG---GKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp EEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES---SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred ceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC---CCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 8899999999999986 46789999993 23 334444433 34578999999999999888 4578999966
Q ss_pred CCcccc
Q 001184 1039 DSLRLR 1044 (1130)
Q Consensus 1039 ~~~~~~ 1044 (1130)
++|.+.
T Consensus 324 ~tG~l~ 329 (345)
T PF10282_consen 324 DTGKLT 329 (345)
T ss_dssp TTTEEE
T ss_pred CCCcEE
Confidence 566654
No 249
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=1.1e-09 Score=119.21 Aligned_cols=522 Identities=12% Similarity=0.112 Sum_probs=303.7
Q ss_pred ec-cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCC
Q 001184 343 TM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDG 421 (1130)
Q Consensus 343 ~~-~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg 421 (1130)
++ +|...|.-+.|..+.+. |.+...+|.|.||-+..|..... .+-....+.|.+++|..||
T Consensus 66 tLeGH~~sV~vvTWNe~~QK-LTtSDt~GlIiVWmlykgsW~EE-----------------MiNnRnKSvV~SmsWn~dG 127 (1189)
T KOG2041|consen 66 TLEGHNASVMVVTWNENNQK-LTTSDTSGLIIVWMLYKGSWCEE-----------------MINNRNKSVVVSMSWNLDG 127 (1189)
T ss_pred hhccCcceEEEEEecccccc-ccccCCCceEEEEeeecccHHHH-----------------HhhCcCccEEEEEEEcCCC
Confidence 44 59999999999999986 88888999999999988765421 1223456789999999999
Q ss_pred CEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeE---------
Q 001184 422 NFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQ--------- 492 (1130)
Q Consensus 422 ~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~--------- 492 (1130)
..++....||.|.|=.+++.+.... .+++. -...+.|++|.+ .++.+-..|.+.++|..|.....
T Consensus 128 ~kIcIvYeDGavIVGsvdGNRIwgK--eLkg~--~l~hv~ws~D~~--~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~ 201 (1189)
T KOG2041|consen 128 TKICIVYEDGAVIVGSVDGNRIWGK--ELKGQ--LLAHVLWSEDLE--QALFKKANGETHLYDNQGNFERKLEKDCEVNG 201 (1189)
T ss_pred cEEEEEEccCCEEEEeeccceecch--hcchh--eccceeecccHH--HHHhhhcCCcEEEecccccHHHhhhhceEEee
Confidence 9999999999999988877543221 22222 245789999999 56777778999999955542211
Q ss_pred ---ecCCCcCEEEEeecc------cCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecC
Q 001184 493 ---FEGHEAPVYSVCPHQ------KENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSK 563 (1130)
Q Consensus 493 ---~~~h~~~v~~~~~~~------~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1130)
+......|..+.|.. .++...|+.+-.+|.+.+..-++......+... -.+....|+++|..|+++|.+.
T Consensus 202 tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg-m~~vgakWnh~G~vLAvcG~~~ 280 (1189)
T KOG2041|consen 202 TGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG-MKIVGAKWNHNGAVLAVCGNDS 280 (1189)
T ss_pred eeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc-cEeecceecCCCcEEEEccCcc
Confidence 111222355555532 246678999999999998877666555555433 6788999999999999998643
Q ss_pred CC-----CcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceE
Q 001184 564 EG-----DSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRL 638 (1130)
Q Consensus 564 ~~-----~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v 638 (1130)
+. .+.|+.|. .-|+.+.+++.. +..++.++|-..|-+++.+ .|+.|++=+++..-.-..+.. .|.-+
T Consensus 281 da~~~~d~n~v~Fys-p~G~i~gtlkvp-g~~It~lsWEg~gLriA~A-vdsfiyfanIRP~ykWgy~e~-----TvVy~ 352 (1189)
T KOG2041|consen 281 DADEPTDSNKVHFYS-PYGHIVGTLKVP-GSCITGLSWEGTGLRIAIA-VDSFIYFANIRPEYKWGYIEE-----TVVYV 352 (1189)
T ss_pred cccCccccceEEEec-cchhheEEEecC-CceeeeeEEcCCceEEEEE-ecceEEEEeecccceEEEeee-----EEEEE
Confidence 32 23666666 457778888764 4489999998776565554 468888877765432222210 01100
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccc
Q 001184 639 RFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTIL 718 (1130)
Q Consensus 639 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~ 718 (1130)
.--++. ..-.|.+||..++...++...+...- +++.+
T Consensus 353 y~~~e~-------p~y~i~Fwdtk~nek~vK~V~~~~~~-----------------a~~~e------------------- 389 (1189)
T KOG2041|consen 353 YQKEEL-------PQYGIMFWDTKTNEKTVKTVTHFENM-----------------AFYRE------------------- 389 (1189)
T ss_pred EccCCC-------cceEEEEEecccChhhhhhhcceeeh-----------------heecc-------------------
Confidence 000111 11246789988876665555432211 11111
Q ss_pred cCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCC-----CCCccceEEEEEeccCCeEEEeeeCCeEEe
Q 001184 719 NGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPES-----TDSASKVARLLYTNSGIGILALWSNGVQKL 793 (1130)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~-----~~~~~~i~~l~~s~~g~~l~~~~~dg~i~i 793 (1130)
--.++.-..++.+.-+.. .........+.+-+. ...-..|.-.-..-++..++.++.+ .+.+
T Consensus 390 ----------hCvL~~~~d~~~i~e~s~--le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vviAS~e-~~~i 456 (1189)
T KOG2041|consen 390 ----------HCVLINRQDDGVIPEYST--LENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVVIASEE-RYFI 456 (1189)
T ss_pred ----------cEEEEeccccCCCcchhh--hhcccceEEEeeecccCCcCCCCcceeeeeEEEecceEEEEeccc-cEEE
Confidence 000111111222222210 000000000000000 0011222222333345555555554 5667
Q ss_pred eecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeC
Q 001184 794 WKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMS 872 (1130)
Q Consensus 794 w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~ 872 (1130)
|.+...+....-. +.. .+...-..+.-.|. |+ |+++ +.. .+++.+
T Consensus 457 Why~~pK~~s~l~--------------~~k-------~rkegr~h~Ddtp~------ga~d~~l---~ys----~kt~~G 502 (1189)
T KOG2041|consen 457 WHYVLPKFNSVLA--------------GVK-------IRKEGRFHGDDTPE------GAQDRTL---EYS----TKTLLG 502 (1189)
T ss_pred EEEeccchhhhhh--------------hhh-------hcccccccCCCCcc------chhhcee---ecc----ceeecc
Confidence 7654432211000 000 00000001111111 11 2221 111 345667
Q ss_pred CCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCccc
Q 001184 873 PPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKR 952 (1130)
Q Consensus 873 ~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~ 952 (1130)
..++|.+++.+. ++|.++-..|.|+-|.+....+..... -...|..++.+-+..+|+....-|.+.+.|++-....
T Consensus 503 ~~DpICAl~~sd---k~l~vareSG~I~rySl~nv~l~n~y~-~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g 578 (1189)
T KOG2041|consen 503 SKDPICALCISD---KFLMVARESGGIYRYSLNNVVLTNSYP-VNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDG 578 (1189)
T ss_pred CCCcceeeeecc---eEEEEEeccCceEEEEecceeeeeccc-cCchheeEeeccCcchhhhhhhhceeeeeecccccCc
Confidence 788999999864 789999999999999999887766654 3456889999888889999988899999988731111
Q ss_pred ceeeEeccCCCCCCCeEEEEEcCCCcEEEE-EcCCcEEEEEC
Q 001184 953 KSIAIQLPAGKLPVGETRVQFHSDQVRLLV-NHETQLAIYDG 993 (1130)
Q Consensus 953 ~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~d~~i~v~d~ 993 (1130)
..... +. ......|..+.|..|+..|++ -....++|++-
T Consensus 579 ~ql~~-~~-~~errDVWd~~Wa~dNp~llAlmeKtrmyifrg 618 (1189)
T KOG2041|consen 579 DQLKL-IY-TSERRDVWDYEWAQDNPNLLALMEKTRMYIFRG 618 (1189)
T ss_pred ceeee-ee-hhhhhhhhhhhhccCCchHHhhhhhceEEEecC
Confidence 11111 11 111145667777777665555 33444556553
No 250
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.38 E-value=5.1e-11 Score=121.29 Aligned_cols=245 Identities=10% Similarity=0.157 Sum_probs=179.2
Q ss_pred CCccEEEEEEcCCCC--EEEEEeCCCeEEEEEecCCccceee---eeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEE
Q 001184 408 SSISVSRVAWSPDGN--FIGVAFTKHLIHLYTYQGSNDLCQS---LEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRV 482 (1130)
Q Consensus 408 h~~~V~~v~~spdg~--~las~~~d~~i~vwd~~~~~~~~~~---~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~i 482 (1130)
....|++++|--|++ .|..++.|..+..+.+......... .......++|..++.. || .|++|-.+|.+.+
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg---~Litc~~sG~l~~ 129 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DG---TLITCVSSGNLQV 129 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CC---EEEEEecCCcEEE
Confidence 345788888887655 4555556777777777665443321 1233445667777765 34 5899999999999
Q ss_pred EecC-----CCeeeEecCCCcCEEEEeecccCCccEEEEEecC--CcEEEEEccCCcceeeecCC---------CccEEE
Q 001184 483 WDLS-----GRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVD--GKIKAWLYDNVGSRVDYDAP---------GLWCTT 546 (1130)
Q Consensus 483 wd~~-----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d--g~i~vwd~~~~~~~~~~~~~---------~~~v~~ 546 (1130)
|... ...+..+..+ ..+..+.-++ ....++++|+.. ..+.+||++..+.++.-... .-+++.
T Consensus 130 ~~~k~~d~hss~l~~la~g-~g~~~~r~~~-~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~td 207 (412)
T KOG3881|consen 130 RHDKSGDLHSSKLIKLATG-PGLYDVRQTD-TDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITD 207 (412)
T ss_pred EeccCCccccccceeeecC-CceeeeccCC-CCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecc
Confidence 9933 3344444433 3444444333 233577789998 88999999988665532221 126788
Q ss_pred EEEecC--CCeEEEeeecCCCCcEEEEeeCCCCc-eeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcee
Q 001184 547 MLYSAD--GSRLFSCGTSKEGDSHLVEWNESEGA-LKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNML 623 (1130)
Q Consensus 547 ~~~s~~--~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 623 (1130)
+.|-+. ...|++++. .+++++||.+.++ ++..+.-. ..++.++...|+++++++|..-|.+..||.+.+...
T Consensus 208 i~Fl~g~~~~~fat~T~----~hqvR~YDt~~qRRPV~~fd~~-E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~ 282 (412)
T KOG3881|consen 208 IRFLEGSPNYKFATITR----YHQVRLYDTRHQRRPVAQFDFL-ENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLL 282 (412)
T ss_pred ceecCCCCCceEEEEec----ceeEEEecCcccCcceeEeccc-cCcceeeeecCCCcEEEEecccchhheecccCceee
Confidence 999987 888999976 8999999998654 55666543 448999999999999999999999999999999887
Q ss_pred EE-EeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 001184 624 TS-TEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGL 665 (1130)
Q Consensus 624 ~~-~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~ 665 (1130)
.. +....+ .|.++..+|.++++++++-|+.+||+|+.+..
T Consensus 283 g~~~kg~tG--sirsih~hp~~~~las~GLDRyvRIhD~ktrk 323 (412)
T KOG3881|consen 283 GCGLKGITG--SIRSIHCHPTHPVLASCGLDRYVRIHDIKTRK 323 (412)
T ss_pred ccccCCccC--CcceEEEcCCCceEEeeccceeEEEeecccch
Confidence 66 554444 79999999999999999999999999998853
No 251
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.38 E-value=1.4e-09 Score=110.84 Aligned_cols=281 Identities=12% Similarity=0.117 Sum_probs=183.1
Q ss_pred CCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeC---CeEEeeecCCCCCCCCcccccccccc
Q 001184 738 SDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSN---GVQKLWKWNRTEQNPSGKATAAVAPQ 814 (1130)
Q Consensus 738 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~ 814 (1130)
++.|.+|++++.... +..+......+..+-++++|+++.|.++..+ |.+..|.+
T Consensus 15 s~gI~v~~ld~~~g~-----l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~i------------------ 71 (346)
T COG2706 15 SQGIYVFNLDTKTGE-----LSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRI------------------ 71 (346)
T ss_pred CCceEEEEEeCcccc-----cchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEE------------------
Confidence 467889998843221 1111113366778889999999999988765 55555543
Q ss_pred cccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe--CCeEEEEECCC-ceeEEE--EeCCCCC----------eEE
Q 001184 815 HWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG--GGKVSLFNMMN-FKVMTT--FMSPPPA----------STF 879 (1130)
Q Consensus 815 ~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~--dg~i~iwd~~~-~~~~~~--~~~~~~~----------i~~ 879 (1130)
|..+|++...........+-..++++++|++++++. .|.|.++-++. |.+... ...|.+. +..
T Consensus 72 --D~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~ 149 (346)
T COG2706 72 --DPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHS 149 (346)
T ss_pred --cCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccce
Confidence 444444332222112344448899999999999998 68999999865 333221 1223333 888
Q ss_pred EEEeCCCCcEEEEEeC-CCcEEEEEeecCeEEEEEe---cCCCCeeEEEEccCCCeEEEEeC-CCcEEEEECCCCccc-c
Q 001184 880 LAFHPQDNNIIAIGME-DSTIQIYNVRVDEVKTKLK---GHQKHITGLAFSTNLNILVSSGS-DAQLIFWNTDTWEKR-K 953 (1130)
Q Consensus 880 l~~sp~~~~~lasg~~-dg~v~iwd~~~~~~~~~l~---~h~~~V~~l~~s~dg~~L~s~s~-Dg~i~vwd~~~~~~~-~ 953 (1130)
..+.| ++++|++.+- --.|.+|++..|++...-. .....-..|+|+|++++.....+ +++|.+|..+..... .
T Consensus 150 a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~ 228 (346)
T COG2706 150 ANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFE 228 (346)
T ss_pred eeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEE
Confidence 99999 7877776642 2469999999876543211 22334678999999999887776 899999999984211 1
Q ss_pred ee-eE-eccC-CCCCCCeEEEEEcCCCcEEEEEc--CCcEEEEECCCc-eeeeeeecCCCCCCCeEEEEECCCCCEEEEE
Q 001184 954 SI-AI-QLPA-GKLPVGETRVQFHSDQVRLLVNH--ETQLAIYDGSKM-ECIRQWVPQDVLSSPISSAAYSCNSQLIYAT 1027 (1130)
Q Consensus 954 ~~-~~-~~~~-~~~~~~v~~~~~s~d~~~l~~~~--d~~i~v~d~~~~-~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~ 1027 (1130)
.. .. .++. .........|..++||++|.+++ .+.|.+|.+... ..+........+...-....|+++|++|+++
T Consensus 229 ~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa 308 (346)
T COG2706 229 ELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAA 308 (346)
T ss_pred EeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEE
Confidence 11 11 1111 12236788999999999999975 346888887632 2233332222334556889999999999999
Q ss_pred eCC-CcEEEEeCC--Ccccc
Q 001184 1028 FTD-GSIGVFDAD--SLRLR 1044 (1130)
Q Consensus 1028 ~~D-g~i~vwd~~--~~~~~ 1044 (1130)
.++ ..|.||..+ +|++-
T Consensus 309 ~q~sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 309 NQKSDNITVFERDKETGRLT 328 (346)
T ss_pred ccCCCcEEEEEEcCCCceEE
Confidence 965 468888554 55543
No 252
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=4.7e-10 Score=119.89 Aligned_cols=353 Identities=13% Similarity=0.145 Sum_probs=208.9
Q ss_pred cEEEEEccCCccee-eecC--CCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcC
Q 001184 522 KIKAWLYDNVGSRV-DYDA--PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDT 598 (1130)
Q Consensus 522 ~i~vwd~~~~~~~~-~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 598 (1130)
.+.+|+........ .+.. ...+++..+++++|++++.+. +..+.|++..++..+.+... . .+..+.|+|
T Consensus 12 ~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~~-----~~~v~i~~~~~~~~~lt~~~--~-~~~~L~fSP 83 (566)
T KOG2315|consen 12 GFYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYSD-----NQVVKVFEIATLKVVLCVEL--K-KTYDLLFSP 83 (566)
T ss_pred eeEEeccCCccccccccccCCCCCcceeEEEcCCCcEEEEEc-----CCeEEEEEccCCcEEEEecc--c-eeeeeeecc
Confidence 45566554322222 2222 244578899999999999986 67899999888865444443 2 577899999
Q ss_pred CCCEEEEE-----eC-----CCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhh
Q 001184 599 TRNRILAA-----GE-----DNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRAL 668 (1130)
Q Consensus 599 ~~~~l~~~-----~~-----dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 668 (1130)
.++++.+- .. .-.+.+|++.++.....+...... -.+..|++|..+.+ --..+.+.+|+..+-....
T Consensus 84 ~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~--~W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~~~ 160 (566)
T KOG2315|consen 84 KGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQN--GWVPQFSIDESLAA-RLVSNEVQFYDLGSFKTIQ 160 (566)
T ss_pred cccccccccccccccCCCCCCCceeeeeeccceehhheehhhhc--Ccccccccchhhhh-hhhcceEEEEecCCcccee
Confidence 99988762 11 234789999996665555544332 25788988876443 3345688999986632221
Q ss_pred hhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeecc
Q 001184 669 RAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTE 748 (1130)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~ 748 (1130)
..+.. ..+....+||. +....-.+ -.--..+....+++|....
T Consensus 161 ~kl~~---------------~~i~~f~lSpg-----------p~~~~vAv-----------yvPe~kGaPa~vri~~~~~ 203 (566)
T KOG2315|consen 161 HKLSV---------------SGITMLSLSPG-----------PEPPFVAV-----------YVPEKKGAPASVRIYKYPE 203 (566)
T ss_pred eeeec---------------cceeeEEecCC-----------CCCceEEE-----------EccCCCCCCcEEEEecccc
Confidence 11111 11111233332 00000000 0001223335666776652
Q ss_pred cc--CCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceec
Q 001184 749 IV--DPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTN 826 (1130)
Q Consensus 749 ~~--~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 826 (1130)
.. .....+. .....=..+.|++-|..|++.... |++....+- ....++.+.+++ |.....
T Consensus 204 ~~~~~~~a~ks-------FFkadkvqm~WN~~gt~LLvLast------dVDktn~SY----YGEq~Lyll~t~-g~s~~V 265 (566)
T KOG2315|consen 204 EGQHQPVANKS-------FFKADKVQMKWNKLGTALLVLAST------DVDKTNASY----YGEQTLYLLATQ-GESVSV 265 (566)
T ss_pred ccccchhhhcc-------ccccceeEEEeccCCceEEEEEEE------eecCCCccc----cccceEEEEEec-CceEEE
Confidence 11 1111111 122233456777777655543321 010000000 001122233333 322222
Q ss_pred cCCCCCCCceeEEEEecCCCEEEEEe---CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCC---CcEE
Q 001184 827 DVPENAEDVVPCVALSKNDSYVMSAG---GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMED---STIQ 900 (1130)
Q Consensus 827 ~~~~~~~~~i~~l~~s~dg~~la~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~d---g~v~ 900 (1130)
.+ ...++|.++.|+++++-+++.. --++.|||++. ..+..+ ..++-+++-|+| .|++|+.++-+ |.|.
T Consensus 266 ~L--~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-~~v~df--~egpRN~~~fnp-~g~ii~lAGFGNL~G~mE 339 (566)
T KOG2315|consen 266 PL--LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-KPVFDF--PEGPRNTAFFNP-HGNIILLAGFGNLPGDME 339 (566)
T ss_pred ec--CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-CEeEeC--CCCCccceEECC-CCCEEEEeecCCCCCceE
Confidence 23 3588999999999998887765 47899999864 344333 467788999999 78888877654 7899
Q ss_pred EEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeC------CCcEEEEECCC
Q 001184 901 IYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGS------DAQLIFWNTDT 948 (1130)
Q Consensus 901 iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~------Dg~i~vwd~~~ 948 (1130)
|||+.+.+++..+..-. -+-..|+|||+++++++. |..++||+...
T Consensus 340 vwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 340 VWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred EEeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 99999999888887543 345799999999999876 77899999876
No 253
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.37 E-value=3.7e-09 Score=117.30 Aligned_cols=292 Identities=13% Similarity=0.189 Sum_probs=175.9
Q ss_pred EEEeeecCCCCcEEEEeeC--CCCceeEEEecccCceeEEEEEcCCCCEEEEEeC----CCcEEEEeCCCC--ce--eEE
Q 001184 556 LFSCGTSKEGDSHLVEWNE--SEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGE----DNQIKFWDMDNV--NM--LTS 625 (1130)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~vwd~~~~--~~--~~~ 625 (1130)
+++++......+.|++|++ .++++...-..........++++|++++|+++.+ ++.|..|++... ++ +..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 3444443223467777776 5555433222112224556889999999999876 568999987764 33 333
Q ss_pred EeccCCCCCcceEEEcCCCCEEEEEe-CCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeecccccccccc
Q 001184 626 TEAEGGLPSLPRLRFNKEGNLLVVTT-ADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAE 704 (1130)
Q Consensus 626 ~~~~~~~~~i~~v~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~ 704 (1130)
....+. ....++++|++++|+++. .+|.+.++++................ ...|+
T Consensus 82 ~~~~g~--~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~-----------------g~g~~----- 137 (345)
T PF10282_consen 82 VPSGGS--SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHE-----------------GSGPN----- 137 (345)
T ss_dssp EEESSS--CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESE-----------------EEESS-----
T ss_pred eccCCC--CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccC-----------------CCCCc-----
Confidence 332222 457899999999999886 48999999987641111110000000 00000
Q ss_pred ccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEE
Q 001184 705 RVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILA 784 (1130)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~ 784 (1130)
+ .........++.++|+|+++++
T Consensus 138 --------------------------------------------------------~-~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 138 --------------------------------------------------------P-DRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp --------------------------------------------------------T-TTTSSTCEEEEEE-TTSSEEEE
T ss_pred --------------------------------------------------------c-cccccccceeEEECCCCCEEEE
Confidence 0 0113345678999999998888
Q ss_pred eee-CCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe--CCeEEEEEC
Q 001184 785 LWS-NGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG--GGKVSLFNM 861 (1130)
Q Consensus 785 ~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~--dg~i~iwd~ 861 (1130)
... ...|.+|++......... .....+ ......+.++|+||++++.+.. +++|.++++
T Consensus 161 ~dlG~D~v~~~~~~~~~~~l~~-----------------~~~~~~--~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~ 221 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGKLTP-----------------VDSIKV--PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDY 221 (345)
T ss_dssp EETTTTEEEEEEE-TTS-TEEE-----------------EEEEEC--STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred EecCCCEEEEEEEeCCCceEEE-----------------eecccc--ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEee
Confidence 754 467888876543211000 000011 3466788999999999998877 788999998
Q ss_pred C--Cce--eEEEEeCC------CCCeEEEEEeCCCCcEEEEEe-CCCcEEEEEee--cC--eEEEEEecCCCCeeEEEEc
Q 001184 862 M--NFK--VMTTFMSP------PPASTFLAFHPQDNNIIAIGM-EDSTIQIYNVR--VD--EVKTKLKGHQKHITGLAFS 926 (1130)
Q Consensus 862 ~--~~~--~~~~~~~~------~~~i~~l~~sp~~~~~lasg~-~dg~v~iwd~~--~~--~~~~~l~~h~~~V~~l~~s 926 (1130)
. ++. .+...... ......++++| |+++|+++. .+++|.+|++. ++ +.+..+.........++++
T Consensus 222 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~isp-dg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s 300 (345)
T PF10282_consen 222 DPSDGSLTEIQTISTLPEGFTGENAPAEIAISP-DGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFS 300 (345)
T ss_dssp ETTTTEEEEEEEEESCETTSCSSSSEEEEEE-T-TSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-
T ss_pred cccCCceeEEEEeeeccccccccCCceeEEEec-CCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEe
Confidence 7 443 23333211 12578899999 677666554 56789999994 34 3344444334447899999
Q ss_pred cCCCeEEEEeC-CCcEEEEECCC
Q 001184 927 TNLNILVSSGS-DAQLIFWNTDT 948 (1130)
Q Consensus 927 ~dg~~L~s~s~-Dg~i~vwd~~~ 948 (1130)
|+|++|+++.. ++.|.+|+++.
T Consensus 301 ~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 301 PDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp TTSSEEEEEETTTTEEEEEEEET
T ss_pred CCCCEEEEEecCCCeEEEEEEeC
Confidence 99999998875 56899998753
No 254
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=9.5e-10 Score=116.74 Aligned_cols=327 Identities=12% Similarity=0.211 Sum_probs=198.3
Q ss_pred EEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEe-----------CCCcE
Q 001184 544 CTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAG-----------EDNQI 612 (1130)
Q Consensus 544 v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----------~dg~i 612 (1130)
-+-+.|||-|.||++-. ..-|.+|--.+...++.|. |. .+.-+.|||..++|++-+ +...+
T Consensus 213 etyv~wSP~GTYL~t~H-----k~GI~lWGG~~f~r~~RF~--Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l 284 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFH-----KQGIALWGGESFDRIQRFY--HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQL 284 (698)
T ss_pred eeeEEecCCceEEEEEe-----ccceeeecCccHHHHHhcc--CC-CceeeecCCccceEEEecCCccccCcccCCCceE
Confidence 45689999999999987 4558999877766666665 22 588899999999999954 22579
Q ss_pred EEEeCCCCceeEEEeccCCCCC-cceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccc
Q 001184 613 KFWDMDNVNMLTSTEAEGGLPS-LPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSA 691 (1130)
Q Consensus 613 ~vwd~~~~~~~~~~~~~~~~~~-i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (1130)
+|||+.+|.....+........ -.-+.||.|++++|.... ..|.||+...- ..+...
T Consensus 285 ~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf----~lld~K----------------- 342 (698)
T KOG2314|consen 285 IIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSF----MLLDKK----------------- 342 (698)
T ss_pred EEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCce----eeeccc-----------------
Confidence 9999999998888776432222 345689999999998776 47888875331 000000
Q ss_pred eeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceE
Q 001184 692 VVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVA 771 (1130)
Q Consensus 692 ~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~ 771 (1130)
.-....|.
T Consensus 343 ------------------------------------------------------------------------slki~gIr 350 (698)
T KOG2314|consen 343 ------------------------------------------------------------------------SLKISGIR 350 (698)
T ss_pred ------------------------------------------------------------------------ccCCcccc
Confidence 00223455
Q ss_pred EEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEE
Q 001184 772 RLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSA 851 (1130)
Q Consensus 772 ~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~ 851 (1130)
.+.|+|.+..|+. |. +.+.. ..
T Consensus 351 ~FswsP~~~llAY---------wt----------------------pe~~~---------~p------------------ 372 (698)
T KOG2314|consen 351 DFSWSPTSNLLAY---------WT----------------------PETNN---------IP------------------ 372 (698)
T ss_pred CcccCCCcceEEE---------Ec----------------------ccccC---------Cc------------------
Confidence 5666666543332 21 11000 00
Q ss_pred eCCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEE----------EeCCCcEEEEEeecCeE-EEEEecCCCCe
Q 001184 852 GGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAI----------GMEDSTIQIYNVRVDEV-KTKLKGHQKHI 920 (1130)
Q Consensus 852 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~las----------g~~dg~v~iwd~~~~~~-~~~l~~h~~~V 920 (1130)
..+.+..+.+++.+++-..+.-.-..|.|-. +|.+|++ .+.-..+.|+.+..... +..+ .-...|
T Consensus 373 --arvtL~evPs~~~iRt~nlfnVsDckLhWQk-~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v-elke~v 448 (698)
T KOG2314|consen 373 --ARVTLMEVPSKREIRTKNLFNVSDCKLHWQK-SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV-ELKESV 448 (698)
T ss_pred --ceEEEEecCccceeeeccceeeeccEEEecc-CCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee-ecchhe
Confidence 1122222223333322222221112233333 3333332 22223466777765432 2222 234678
Q ss_pred eEEEEccCCCeEEEEeCC---CcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEE----EcCCcEEEEEC
Q 001184 921 TGLAFSTNLNILVSSGSD---AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV----NHETQLAIYDG 993 (1130)
Q Consensus 921 ~~l~~s~dg~~L~s~s~D---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~----~~d~~i~v~d~ 993 (1130)
...+|-|.|+.+++.+.. .++.+|.+++..........+.. .....+.|+|.|+++++ +..+.+..+|+
T Consensus 449 i~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk----~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~ 524 (698)
T KOG2314|consen 449 IAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK----KFANTVFWSPKGRFVVVAALVSRRGDLEFYDT 524 (698)
T ss_pred eeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc----cccceEEEcCCCcEEEEEEecccccceEEEec
Confidence 999999999988876653 57899988852221111111111 45678999999999987 45889999999
Q ss_pred CCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeC------CCcEEEEeCCCc
Q 001184 994 SKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFT------DGSIGVFDADSL 1041 (1130)
Q Consensus 994 ~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~------Dg~i~vwd~~~~ 1041 (1130)
.-..+...-.+. -...+.+.|.|.|+|++|++. |.-.++|+....
T Consensus 525 ~~a~~k~~~~~e---h~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGr 575 (698)
T KOG2314|consen 525 DYADLKDTASPE---HFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGR 575 (698)
T ss_pred chhhhhhccCcc---ccccccceECCCCCEEEEeeehhhhccccceEEEEeecH
Confidence 853333322222 135678999999999999985 556788888744
No 255
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.35 E-value=3.3e-09 Score=113.62 Aligned_cols=202 Identities=14% Similarity=0.166 Sum_probs=130.0
Q ss_pred eEEEEecCCCEEEEEe---CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeec-CeEE-E
Q 001184 837 PCVALSKNDSYVMSAG---GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRV-DEVK-T 911 (1130)
Q Consensus 837 ~~l~~s~dg~~la~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~-~~~~-~ 911 (1130)
..++++|||+++.+.. +..|.+.|+.+++.+.++....+ ..-...++ +..+ +-+.||......+.+ ++.. .
T Consensus 108 ~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~-~~vy~t~e-~~~~--~~~~Dg~~~~v~~d~~g~~~~~ 183 (352)
T TIGR02658 108 WMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC-YHIFPTAN-DTFF--MHCRDGSLAKVGYGTKGNPKIK 183 (352)
T ss_pred ceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCC-cEEEEecC-CccE--EEeecCceEEEEecCCCceEEe
Confidence 3578888998888765 57899999999998888875331 22222222 2222 122344444333321 2211 1
Q ss_pred ---EEecCCCCee-EEEEcc-CCCeEEEEeCCCcEEEEECCCCcccceeeEeccC------CCCCCCeEEEEEcCCCcEE
Q 001184 912 ---KLKGHQKHIT-GLAFST-NLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPA------GKLPVGETRVQFHSDQVRL 980 (1130)
Q Consensus 912 ---~l~~h~~~V~-~l~~s~-dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~------~~~~~~v~~~~~s~d~~~l 980 (1130)
.+.+-..++. .-.|++ ||+++..... |+|.+-|+...+........... +-.+....-++++++++.+
T Consensus 184 ~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~l 262 (352)
T TIGR02658 184 PTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRI 262 (352)
T ss_pred eeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEE
Confidence 1111001110 014456 8887777666 99999997664433333222211 2233555569999999988
Q ss_pred EE-Ec----------CCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCC-EEEEEe-CCCcEEEEeCCCccccccc
Q 001184 981 LV-NH----------ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQ-LIYATF-TDGSIGVFDADSLRLRCRI 1047 (1130)
Q Consensus 981 ~~-~~----------d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~-~l~t~~-~Dg~i~vwd~~~~~~~~~~ 1047 (1130)
.+ .+ .+.|.++|..+++.+..+... ..+..+++||||+ +|++.. .++.|.|.|..+++.+..+
T Consensus 263 yV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG----~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 263 YLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG----HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC----CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 87 32 257999999999999998764 5899999999999 888777 5788999999999988887
No 256
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=4.1e-10 Score=129.07 Aligned_cols=223 Identities=15% Similarity=0.107 Sum_probs=140.2
Q ss_pred ecCCCccEEEEEEcCCCCEEEEEeCC---CeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCc--
Q 001184 405 VKDSSISVSRVAWSPDGNFIGVAFTK---HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKL-- 479 (1130)
Q Consensus 405 ~~~h~~~V~~v~~spdg~~las~~~d---~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~-- 479 (1130)
+..+...+.+.+|||||+.|+..+.+ ..|.+||+.+++... +....+.....+|+|||+. ++++.+.++.
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~----lt~~~g~~~~~~wSPDG~~-La~~~~~~g~~~ 287 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK----VTSFPGINGAPRFSPDGKK-LALVLSKDGQPE 287 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE----ecCCCCCcCCeeECCCCCE-EEEEEeCCCCeE
Confidence 34556788999999999999887543 268899998876322 2222333457899999996 3445566665
Q ss_pred EEEEecCCCeeeEecCCCcCEEEEeecccCCccEEEEEe-cCCc--EEEEEccCCcceeeecCCCccEEEEEEecCCCeE
Q 001184 480 IRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTA-VDGK--IKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRL 556 (1130)
Q Consensus 480 v~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~dg~--i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 556 (1130)
|.+||..+..+..+..+.......+|++ |++.|+..+ .++. |.++|+.+++.. .+..........+|+|||+++
T Consensus 288 Iy~~dl~tg~~~~lt~~~~~~~~p~wSp--DG~~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~~g~~~~~~~~SpDG~~l 364 (448)
T PRK04792 288 IYVVDIATKALTRITRHRAIDTEPSWHP--DGKSLIFTSERGGKPQIYRVNLASGKVS-RLTFEGEQNLGGSITPDGRSM 364 (448)
T ss_pred EEEEECCCCCeEECccCCCCccceEECC--CCCEEEEEECCCCCceEEEEECCCCCEE-EEecCCCCCcCeeECCCCCEE
Confidence 7777855555666666666667777865 456565544 3444 555566554432 222233334457899999999
Q ss_pred EEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCC-C--cEEEEeCCCCceeEEEeccCCCC
Q 001184 557 FSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGED-N--QIKFWDMDNVNMLTSTEAEGGLP 633 (1130)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~vwd~~~~~~~~~~~~~~~~~ 633 (1130)
+..+.. .+...|.++|+.+++... +.... ......|+|+|+.|+..+.+ + .+++++. +|.....+....+
T Consensus 365 ~~~~~~-~g~~~I~~~dl~~g~~~~-lt~~~--~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g-- 437 (448)
T PRK04792 365 IMVNRT-NGKFNIARQDLETGAMQV-LTSTR--LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQG-- 437 (448)
T ss_pred EEEEec-CCceEEEEEECCCCCeEE-ccCCC--CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCC--
Confidence 887642 234578888988876543 22211 12234799999988775543 3 3777787 4555555544322
Q ss_pred CcceEEEcC
Q 001184 634 SLPRLRFNK 642 (1130)
Q Consensus 634 ~i~~v~~s~ 642 (1130)
.+...+|+|
T Consensus 438 ~~~~p~Wsp 446 (448)
T PRK04792 438 EVKSPAWSP 446 (448)
T ss_pred CcCCCccCC
Confidence 466777776
No 257
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=5.5e-10 Score=129.05 Aligned_cols=237 Identities=15% Similarity=0.121 Sum_probs=149.8
Q ss_pred eEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeCC---CeEEEEEecCCccceee
Q 001184 371 EITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTK---HLIHLYTYQGSNDLCQS 447 (1130)
Q Consensus 371 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d---~~i~vwd~~~~~~~~~~ 447 (1130)
.|.++|.+.+... .+..+...+...+|||||+.||..+.+ ..|.+||+.+++...
T Consensus 180 ~l~~~d~~g~~~~--------------------~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-- 237 (430)
T PRK00178 180 TLQRSDYDGARAV--------------------TLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-- 237 (430)
T ss_pred EEEEECCCCCCce--------------------EEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--
Confidence 4778888755432 234566789999999999999887644 369999998876432
Q ss_pred eeeecCCCCeeEEEEecCCCceEEEEEcCCC--cEEEEecCCCeeeEecCCCcCEEEEeecccCCccEEEEEe-cCC--c
Q 001184 448 LEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK--LIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTA-VDG--K 522 (1130)
Q Consensus 448 ~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~--~v~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~dg--~ 522 (1130)
+....+.+...+|+|||+. ++++.+.++ .|.+||..+.....+..+........|++ +++.++..+ .+| .
T Consensus 238 --l~~~~g~~~~~~~SpDG~~-la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~sp--Dg~~i~f~s~~~g~~~ 312 (430)
T PRK00178 238 --ITNFEGLNGAPAWSPDGSK-LAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGK--DGRTLYFTSDRGGKPQ 312 (430)
T ss_pred --ccCCCCCcCCeEECCCCCE-EEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECC--CCCEEEEEECCCCCce
Confidence 2333344567899999995 334555555 58888955555566666666666677754 556555544 344 4
Q ss_pred EEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCE
Q 001184 523 IKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNR 602 (1130)
Q Consensus 523 i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 602 (1130)
|.++++.+++... +...........|+|||+.++.... .++...|++||+.+++........ ......|+|+|+.
T Consensus 313 iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i~~~~~-~~~~~~l~~~dl~tg~~~~lt~~~---~~~~p~~spdg~~ 387 (430)
T PRK00178 313 IYKVNVNGGRAER-VTFVGNYNARPRLSADGKTLVMVHR-QDGNFHVAAQDLQRGSVRILTDTS---LDESPSVAPNGTM 387 (430)
T ss_pred EEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEc-cCCceEEEEEECCCCCEEEccCCC---CCCCceECCCCCE
Confidence 6666766554332 2222233445789999999988764 223457999999887654332221 1224579999998
Q ss_pred EEEEeCC---CcEEEEeCCCCceeEEEeccCCCCCcceEEEcC
Q 001184 603 ILAAGED---NQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK 642 (1130)
Q Consensus 603 l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~ 642 (1130)
++..+.+ ..|+++++... ....+....+ .+...+|+|
T Consensus 388 i~~~~~~~g~~~l~~~~~~g~-~~~~l~~~~g--~~~~p~ws~ 427 (430)
T PRK00178 388 LIYATRQQGRGVLMLVSINGR-VRLPLPTAQG--EVREPSWSP 427 (430)
T ss_pred EEEEEecCCceEEEEEECCCC-ceEECcCCCC--CcCCCccCC
Confidence 8876643 35777787543 3333433222 456667766
No 258
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=3.6e-10 Score=128.36 Aligned_cols=228 Identities=11% Similarity=0.022 Sum_probs=141.6
Q ss_pred cCCCCEEEEEEecCCCe--EEEEEeCcC--eEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCC
Q 001184 345 HQGSSVVSMDFHPFHHT--LLVVGCGDG--EITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD 420 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~--llasg~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 420 (1130)
.....+..-+|||||+. ++++...+| .|.+.++.+|+... +....+.....+||||
T Consensus 182 ~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~--------------------lt~~~g~~~~p~wSPD 241 (428)
T PRK01029 182 QEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK--------------------ILALQGNQLMPTFSPR 241 (428)
T ss_pred cCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE--------------------eecCCCCccceEECCC
Confidence 34556778899999975 333444443 58888888876543 2223344557899999
Q ss_pred CCEEEEEeC-----CCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe--c--CCCeee
Q 001184 421 GNFIGVAFT-----KHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--L--SGRKLF 491 (1130)
Q Consensus 421 g~~las~~~-----d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd--~--~~~~~~ 491 (1130)
|+.||..+. +..+.+|++.++..-.......++.+.....+|+|||+. ++++...++...||. . .+....
T Consensus 242 G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~-Laf~s~~~g~~~ly~~~~~~~g~~~~ 320 (428)
T PRK01029 242 KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTR-LVFVSNKDGRPRIYIMQIDPEGQSPR 320 (428)
T ss_pred CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCE-EEEEECCCCCceEEEEECcccccceE
Confidence 999987653 223445777653211111112223344567899999995 333444566656664 3 234455
Q ss_pred EecCCCcCEEEEeecccCCccEEEEEecC---CcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcE
Q 001184 492 QFEGHEAPVYSVCPHQKENIHFIFSTAVD---GKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSH 568 (1130)
Q Consensus 492 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 568 (1130)
.+..+...+....|+| ||+.|+..+.+ ..|.+||+.+++..... .....+....|+|||+.|+..+. ..+...
T Consensus 321 ~lt~~~~~~~~p~wSP--DG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt-~~~~~~~~p~wSpDG~~L~f~~~-~~g~~~ 396 (428)
T PRK01029 321 LLTKKYRNSSCPAWSP--DGKKIAFCSVIKGVRQICVYDLATGRDYQLT-TSPENKESPSWAIDSLHLVYSAG-NSNESE 396 (428)
T ss_pred EeccCCCCccceeECC--CCCEEEEEEcCCCCcEEEEEECCCCCeEEcc-CCCCCccceEECCCCCEEEEEEC-CCCCce
Confidence 5655556667777755 55677665443 36899999877654432 22345678999999999887653 234678
Q ss_pred EEEeeCCCCceeEEEecccCceeEEEEEcCC
Q 001184 569 LVEWNESEGALKRTYIGFRKKSAGVVQFDTT 599 (1130)
Q Consensus 569 i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~ 599 (1130)
|+++|+.+++......+ .+.+...+|+|-
T Consensus 397 L~~vdl~~g~~~~Lt~~--~g~~~~p~Ws~~ 425 (428)
T PRK01029 397 LYLISLITKKTRKIVIG--SGEKRFPSWGAF 425 (428)
T ss_pred EEEEECCCCCEEEeecC--CCcccCceecCC
Confidence 99999988776554432 224555677764
No 259
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.31 E-value=3.7e-11 Score=119.92 Aligned_cols=121 Identities=19% Similarity=0.429 Sum_probs=91.1
Q ss_pred cCCCCEEEEEEecCCCeEEEE-EeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCE
Q 001184 345 HQGSSVVSMDFHPFHHTLLVV-GCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNF 423 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llas-g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 423 (1130)
...+.|.+++|+|+|+.++++ |..++.|.|||++ ++.+. .-+...+..+.|||+|++
T Consensus 57 ~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~---------------------~~~~~~~n~i~wsP~G~~ 114 (194)
T PF08662_consen 57 KKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIF---------------------SFGTQPRNTISWSPDGRF 114 (194)
T ss_pred cCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeE---------------------eecCCCceEEEECCCCCE
Confidence 345579999999999975444 4567899999996 44332 123457889999999999
Q ss_pred EEEEeCC---CeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEc------CCCcEEEEecCCCeeeEec
Q 001184 424 IGVAFTK---HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCG------DDKLIRVWDLSGRKLFQFE 494 (1130)
Q Consensus 424 las~~~d---~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s------~d~~v~iwd~~~~~~~~~~ 494 (1130)
||+++.+ |.|.+||+++.+.+. .. .|. .++.++|+|||+ +++++. .|+.++||+..|+.+....
T Consensus 115 l~~~g~~n~~G~l~~wd~~~~~~i~---~~-~~~-~~t~~~WsPdGr--~~~ta~t~~r~~~dng~~Iw~~~G~~l~~~~ 187 (194)
T PF08662_consen 115 LVLAGFGNLNGDLEFWDVRKKKKIS---TF-EHS-DATDVEWSPDGR--YLATATTSPRLRVDNGFKIWSFQGRLLYKKP 187 (194)
T ss_pred EEEEEccCCCcEEEEEECCCCEEee---cc-ccC-cEEEEEEcCCCC--EEEEEEeccceeccccEEEEEecCeEeEecc
Confidence 9998754 679999999766543 22 233 478999999999 566654 3889999998898876643
No 260
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.31 E-value=2.4e-10 Score=114.10 Aligned_cols=262 Identities=12% Similarity=0.194 Sum_probs=174.5
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeec--CCCccEEEEEEcCCCC-
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVK--DSSISVSRVAWSPDGN- 422 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~V~~v~~spdg~- 422 (1130)
..+-|.+|.|..+|. +||+|..+|.|.++.-+.... .+++++.... +.......++ .-...|..+.|.+++.
T Consensus 24 eadiis~vef~~~Ge-~LatGdkgGRVv~f~r~~~~~---~ey~~~t~fq-shepEFDYLkSleieEKinkIrw~~~~n~ 98 (433)
T KOG1354|consen 24 EADIISAVEFDHYGE-RLATGDKGGRVVLFEREKLYK---GEYNFQTEFQ-SHEPEFDYLKSLEIEEKINKIRWLDDGNL 98 (433)
T ss_pred hhcceeeEEeecccc-eEeecCCCCeEEEeecccccc---cceeeeeeee-ccCcccchhhhhhhhhhhhhceecCCCCc
Confidence 456799999999999 499999999999997653322 1111110000 0000000011 1235789999999765
Q ss_pred -EEEEEeCCCeEEEEEecCCccce--------------------------------eeee-eecCCCCeeEEEEecCCCc
Q 001184 423 -FIGVAFTKHLIHLYTYQGSNDLC--------------------------------QSLE-IDAHVGGVNDLAFSYPNKQ 468 (1130)
Q Consensus 423 -~las~~~d~~i~vwd~~~~~~~~--------------------------------~~~~-~~~h~~~V~~i~~s~d~~~ 468 (1130)
.+...+.|++|++|.+....... +... -.+|...|.+|+++.|+.
T Consensus 99 a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E- 177 (433)
T KOG1354|consen 99 AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE- 177 (433)
T ss_pred cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc-
Confidence 56667789999999985422110 0001 246888899999999998
Q ss_pred eEEEEEcCCCcEEEEe--cCCCe--eeEecCC-----CcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcc------
Q 001184 469 LCIVTCGDDKLIRVWD--LSGRK--LFQFEGH-----EAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGS------ 533 (1130)
Q Consensus 469 l~l~s~s~d~~v~iwd--~~~~~--~~~~~~h-----~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~------ 533 (1130)
.++++ .|=.|-+|+ ...+. +..++.+ +.-|++..|+|... +.++..+..|+|++.|++....
T Consensus 178 -t~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c-n~f~YSSSKGtIrLcDmR~~aLCd~hsK 254 (433)
T KOG1354|consen 178 -TFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC-NVFVYSSSKGTIRLCDMRQSALCDAHSK 254 (433)
T ss_pred -eEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc-cEEEEecCCCcEEEeechhhhhhcchhh
Confidence 55655 577899999 34433 2333333 34578888988654 6788888899999999984221
Q ss_pred eeee----------cCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeC-CCCceeEEEecccCc-----------e-
Q 001184 534 RVDY----------DAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNE-SEGALKRTYIGFRKK-----------S- 590 (1130)
Q Consensus 534 ~~~~----------~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~-~~~~~~~~~~~~~~~-----------~- 590 (1130)
.... ...-..|..+.|+.+|+++++-. --+|.+||+ ...+++.+++-|... .
T Consensus 255 lfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-----yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~I 329 (433)
T KOG1354|consen 255 LFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-----YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAI 329 (433)
T ss_pred hhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-----cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccch
Confidence 1111 11112578899999999999864 478999999 556777777665321 1
Q ss_pred --eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 001184 591 --AGVVQFDTTRNRILAAGEDNQIKFWDMDNVN 621 (1130)
Q Consensus 591 --v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 621 (1130)
-..++|+.++.++++|+....+++++...|.
T Consensus 330 fdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 330 FDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred hheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 1247899888999999999999999965543
No 261
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.31 E-value=6.5e-10 Score=117.16 Aligned_cols=286 Identities=11% Similarity=0.090 Sum_probs=191.1
Q ss_pred CCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEE
Q 001184 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGV 426 (1130)
Q Consensus 347 ~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las 426 (1130)
.-++..+.|||.|++ |++.. -..|.+|.-.....+.. --...|..+.|||+++||.+
T Consensus 32 ~~p~~~~~~SP~G~~-l~~~~-~~~V~~~~g~~~~~l~~---------------------~~~~~V~~~~fSP~~kYL~t 88 (561)
T COG5354 32 NWPVAYVSESPLGTY-LFSEH-AAGVECWGGPSKAKLVR---------------------FRHPDVKYLDFSPNEKYLVT 88 (561)
T ss_pred CcchhheeecCcchh-eehhh-ccceEEccccchhheee---------------------eecCCceecccCcccceeee
Confidence 447889999999985 66554 34689998776553321 11236899999999999998
Q ss_pred EeCCC---------------eEEEEEecCCccceeeeeeecCCCC--ee-EEEEecCCCceEEEEEcCCCcEEEEecCCC
Q 001184 427 AFTKH---------------LIHLYTYQGSNDLCQSLEIDAHVGG--VN-DLAFSYPNKQLCIVTCGDDKLIRVWDLSGR 488 (1130)
Q Consensus 427 ~~~d~---------------~i~vwd~~~~~~~~~~~~~~~h~~~--V~-~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~ 488 (1130)
-+..+ .+.+||+.+|..+. .+.+...+ .+ -+.|+-++++ ++-- -...++|++.++.
T Consensus 89 w~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~---sf~~~~q~~~~Wp~~k~s~~D~y--~ARv-v~~sl~i~e~t~n 162 (561)
T COG5354 89 WSREPIIEPEIEISPFTSKNNVFVWDIASGMIVF---SFNGISQPYLGWPVLKFSIDDKY--VARV-VGSSLYIHEITDN 162 (561)
T ss_pred eccCCccChhhccCCccccCceeEEeccCceeEe---eccccCCcccccceeeeeecchh--hhhh-ccCeEEEEecCCc
Confidence 65443 49999999987554 34444444 55 6889999883 3332 2346888885332
Q ss_pred e-eeEecCC-CcCEEEEeecccCCccEEEEE-----ecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeee
Q 001184 489 K-LFQFEGH-EAPVYSVCPHQKENIHFIFST-----AVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGT 561 (1130)
Q Consensus 489 ~-~~~~~~h-~~~v~~~~~~~~~~~~~l~s~-----s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 561 (1130)
. ...+..- ...|....|+|..++..|+.- +.++++++|.+.....+.....-...-..+.|.+.|+++++-..
T Consensus 163 ~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~ 242 (561)
T COG5354 163 IEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVM 242 (561)
T ss_pred cccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEE
Confidence 2 1222211 255777788887676666543 56788999998865555543333333456888999998775432
Q ss_pred -------cCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEE--eCCCcEEEEeCCCCceeEEEeccCCC
Q 001184 562 -------SKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAA--GEDNQIKFWDMDNVNMLTSTEAEGGL 632 (1130)
Q Consensus 562 -------~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~vwd~~~~~~~~~~~~~~~~ 632 (1130)
+.-+...+++++++...+ ..... ..++|...+|.|.++.+++. -.+-.+.++|++.. ....+...
T Consensus 243 t~~ksnKsyfgesnLyl~~~~e~~i-~V~~~-~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~--- 316 (561)
T COG5354 243 THTKSNKSYFGESNLYLLRITERSI-PVEKD-LKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQ--- 316 (561)
T ss_pred EeeecccceeccceEEEEeeccccc-ceecc-ccccceeeeecccCCceeEEecccccceeecccccc-eEEecCCc---
Confidence 112357789999874333 33322 33489999999999877664 47888999998765 43333322
Q ss_pred CCcceEEEcCCCCEEEEEeCC---CcEEEEEcCCCchhh
Q 001184 633 PSLPRLRFNKEGNLLVVTTAD---QGIKILANADGLRAL 668 (1130)
Q Consensus 633 ~~i~~v~~s~~~~~l~~~~~d---g~i~iw~~~~~~~~~ 668 (1130)
.=+.+.|+|.+++++.++-| |.+.+|+......+.
T Consensus 317 -~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~ 354 (561)
T COG5354 317 -KRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVA 354 (561)
T ss_pred -ccccccccCcccEEEEecCCccccceEEeccCCceEEE
Confidence 34678899999999987765 679999987764444
No 262
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.30 E-value=5.7e-10 Score=129.06 Aligned_cols=210 Identities=17% Similarity=0.116 Sum_probs=138.1
Q ss_pred ecCCCccEEEEEEcCCCCEEEEEeCC---CeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCC--c
Q 001184 405 VKDSSISVSRVAWSPDGNFIGVAFTK---HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK--L 479 (1130)
Q Consensus 405 ~~~h~~~V~~v~~spdg~~las~~~d---~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~--~ 479 (1130)
+..+...+.+.+|||||++||.++.+ ..|++||+.+++... +..+.+.+.+++|+|||+. ++++.+.++ .
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~----~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~ 259 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK----VASFPGMNGAPAFSPDGSK-LAVSLSKDGNPD 259 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEECCCCCcc
Confidence 34566678999999999999988654 479999999875332 3445566778999999985 344555544 5
Q ss_pred EEEEecCCCeeeEecCCCcCEEEEeecccCCccEEEEEec-CC--cEEEEEccCCcceeeecCCCccEEEEEEecCCCeE
Q 001184 480 IRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAV-DG--KIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRL 556 (1130)
Q Consensus 480 v~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 556 (1130)
|++||..+.....+..+........|++ +++.|+..+. ++ .|.++|+.+... ..+...........|+|+|+++
T Consensus 260 i~~~d~~~~~~~~l~~~~~~~~~~~~s~--dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i 336 (417)
T TIGR02800 260 IYVMDLDGKQLTRLTNGPGIDTEPSWSP--DGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLI 336 (417)
T ss_pred EEEEECCCCCEEECCCCCCCCCCEEECC--CCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCEE
Confidence 8888855555556655655555667754 5666665544 33 566777765443 3344445567788999999999
Q ss_pred EEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCC---cEEEEeCCCCceeEEEe
Q 001184 557 FSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDN---QIKFWDMDNVNMLTSTE 627 (1130)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~ 627 (1130)
+.+.... +...|++||+.++... .+... . ......|+|++++|+..+.++ .+++.+.. +.....+.
T Consensus 337 ~~~~~~~-~~~~i~~~d~~~~~~~-~l~~~-~-~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~ 405 (417)
T TIGR02800 337 AFVHREG-GGFNIAVMDLDGGGER-VLTDT-G-LDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARLP 405 (417)
T ss_pred EEEEccC-CceEEEEEeCCCCCeE-EccCC-C-CCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeECC
Confidence 9887421 2458999999876543 23221 1 233467999999888876654 45555543 44444443
No 263
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=2.9e-10 Score=130.33 Aligned_cols=224 Identities=14% Similarity=0.085 Sum_probs=135.3
Q ss_pred eccCCCCEEEEEEecCCCeEEEEEeCcC--eEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCC
Q 001184 343 TMHQGSSVVSMDFHPFHHTLLVVGCGDG--EITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD 420 (1130)
Q Consensus 343 ~~~h~~~V~~v~fspdg~~llasg~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 420 (1130)
...+...+.+.+|||||++++++...++ .|.+||+.+++... +....+.....+||||
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~--------------------lt~~~g~~~~~~wSPD 272 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK--------------------VTSFPGINGAPRFSPD 272 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ecCCCCCcCCeeECCC
Confidence 3456778899999999997555544443 58899998876532 1111223446899999
Q ss_pred CCEEEEE-eCCCe--EEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCC--cEEEEecCCCeeeEecC
Q 001184 421 GNFIGVA-FTKHL--IHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK--LIRVWDLSGRKLFQFEG 495 (1130)
Q Consensus 421 g~~las~-~~d~~--i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~--~v~iwd~~~~~~~~~~~ 495 (1130)
|+.|+.. +.++. |.+||+.+++.. .+..+.......+|+|||+. ++++...++ .|.++|..+.....+..
T Consensus 273 G~~La~~~~~~g~~~Iy~~dl~tg~~~----~lt~~~~~~~~p~wSpDG~~-I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~ 347 (448)
T PRK04792 273 GKKLALVLSKDGQPEIYVVDIATKALT----RITRHRAIDTEPSWHPDGKS-LIFTSERGGKPQIYRVNLASGKVSRLTF 347 (448)
T ss_pred CCEEEEEEeCCCCeEEEEEECCCCCeE----ECccCCCCccceEECCCCCE-EEEEECCCCCceEEEEECCCCCEEEEec
Confidence 9988764 55564 777888876532 24445566788999999995 334444444 45556644333444332
Q ss_pred CCcCEEEEeecccCCccEEEEEec-CCc--EEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEe
Q 001184 496 HEAPVYSVCPHQKENIHFIFSTAV-DGK--IKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEW 572 (1130)
Q Consensus 496 h~~~v~~~~~~~~~~~~~l~s~s~-dg~--i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w 572 (1130)
........+|+| +++.|+..+. ++. |.++|++++.... +... .......|+|||++|+.... .++...++++
T Consensus 348 ~g~~~~~~~~Sp--DG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~-~~g~~~l~~~ 422 (448)
T PRK04792 348 EGEQNLGGSITP--DGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTT-YQGKQVLAAV 422 (448)
T ss_pred CCCCCcCeeECC--CCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEe-cCCceEEEEE
Confidence 222233456654 5566665544 444 4445666554332 2211 12234579999999988764 2345568888
Q ss_pred eCCCCceeEEEecccCceeEEEEEcC
Q 001184 573 NESEGALKRTYIGFRKKSAGVVQFDT 598 (1130)
Q Consensus 573 d~~~~~~~~~~~~~~~~~v~~~~~~~ 598 (1130)
+. +|...+.+..... .+...+|+|
T Consensus 423 ~~-~G~~~~~l~~~~g-~~~~p~Wsp 446 (448)
T PRK04792 423 SI-DGRFKARLPAGQG-EVKSPAWSP 446 (448)
T ss_pred EC-CCCceEECcCCCC-CcCCCccCC
Confidence 86 4656565654322 455566765
No 264
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.29 E-value=3.1e-10 Score=113.25 Aligned_cols=162 Identities=20% Similarity=0.378 Sum_probs=114.9
Q ss_pred EEEEEcCCCCEEEEEeC----------CCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEE
Q 001184 413 SRVAWSPDGNFIGVAFT----------KHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRV 482 (1130)
Q Consensus 413 ~~v~~spdg~~las~~~----------d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~i 482 (1130)
..+.|+|+|++|+.-.. -+...+|.++..........+. ..++|.+++|+|+|+.+.+++|..++.|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~-~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELK-KEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeecc-CCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 46889999998876533 1345666664332222222222 345799999999999755566767889999
Q ss_pred EecCCCeeeEecCCCcCEEEEeecccCCccEEEEEecC---CcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEe
Q 001184 483 WDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVD---GKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSC 559 (1130)
Q Consensus 483 wd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 559 (1130)
||.+++.+..+. ...++.+.|+| +|++|++++.+ |.|.+||.++.+.+..... ..+..++|+|||++++++
T Consensus 88 yd~~~~~i~~~~--~~~~n~i~wsP--~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~--~~~t~~~WsPdGr~~~ta 161 (194)
T PF08662_consen 88 YDVKGKKIFSFG--TQPRNTISWSP--DGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH--SDATDVEWSPDGRYLATA 161 (194)
T ss_pred EcCcccEeEeec--CCCceEEEECC--CCCEEEEEEccCCCcEEEEEECCCCEEeecccc--CcEEEEEEcCCCCEEEEE
Confidence 997788888774 46778898865 55788888744 6799999997666655443 347899999999999998
Q ss_pred eec--CCCCcEEEEeeCCCCceeEE
Q 001184 560 GTS--KEGDSHLVEWNESEGALKRT 582 (1130)
Q Consensus 560 ~~~--~~~~~~i~~wd~~~~~~~~~ 582 (1130)
... ...++.++||+.. |+.+..
T Consensus 162 ~t~~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 162 TTSPRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred EeccceeccccEEEEEec-CeEeEe
Confidence 753 2246778999974 555443
No 265
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.28 E-value=1.4e-09 Score=108.83 Aligned_cols=192 Identities=15% Similarity=0.253 Sum_probs=121.1
Q ss_pred CCCeeEEEEecCCCceEEEEEcCCCcEEEEe--cCCC----eeeEecCCC------------cCEEEEeecccCCccEEE
Q 001184 454 VGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGR----KLFQFEGHE------------APVYSVCPHQKENIHFIF 515 (1130)
Q Consensus 454 ~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd--~~~~----~~~~~~~h~------------~~v~~~~~~~~~~~~~l~ 515 (1130)
..-|.++.|...|. +|++|..+|.|.++. ...+ ....+..|. ..|..+.|....+...++
T Consensus 25 adiis~vef~~~Ge--~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 25 ADIISAVEFDHYGE--RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred hcceeeEEeecccc--eEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 45689999999999 899999999999998 2222 222333343 357778888888888899
Q ss_pred EEecCCcEEEEEccCCcceee-----ecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCce
Q 001184 516 STAVDGKIKAWLYDNVGSRVD-----YDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKS 590 (1130)
Q Consensus 516 s~s~dg~i~vwd~~~~~~~~~-----~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~ 590 (1130)
..+.|.+|++|.+........ .......+.++..- +.+.. +- +. ...+.+.+...|.--
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p------~~~~~----~~-~v-----ea~prRv~aNaHtyh 166 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLP------VEGRH----DL-EV-----EASPRRVYANAHTYH 166 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeece------eeccc----cc-ee-----eeeeeeeccccceeE
Confidence 999999999998876444331 01111112222111 00000 00 00 012334555445557
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc-eeEEEeccCC-----CCCcceEEEcCC-CCEEEEEeCCCcEEEEEcCC
Q 001184 591 AGVVQFDTTRNRILAAGEDNQIKFWDMDNVN-MLTSTEAEGG-----LPSLPRLRFNKE-GNLLVVTTADQGIKILANAD 663 (1130)
Q Consensus 591 v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~-----~~~i~~v~~s~~-~~~l~~~~~dg~i~iw~~~~ 663 (1130)
+.++.++.|+..++++. |=.|.+|+++--. .......... ..-|++..|+|. -++++-.+..|+|++-|+..
T Consensus 167 iNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~ 245 (433)
T KOG1354|consen 167 INSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQ 245 (433)
T ss_pred eeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechh
Confidence 88999999998888774 6789999986432 2222211111 124788899994 46777788899999999864
Q ss_pred C
Q 001184 664 G 664 (1130)
Q Consensus 664 ~ 664 (1130)
.
T Consensus 246 ~ 246 (433)
T KOG1354|consen 246 S 246 (433)
T ss_pred h
Confidence 3
No 266
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=1.8e-09 Score=122.59 Aligned_cols=241 Identities=12% Similarity=0.064 Sum_probs=147.7
Q ss_pred CeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEE---EEeCC--CeEEEEEecCCccc
Q 001184 370 GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG---VAFTK--HLIHLYTYQGSNDL 444 (1130)
Q Consensus 370 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la---s~~~d--~~i~vwd~~~~~~~ 444 (1130)
..|.+.|.+.+.... +......+.+-+|||||+.++ +...+ ..|.+.++.+|+..
T Consensus 165 ~~l~~~d~dG~~~~~--------------------lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~ 224 (428)
T PRK01029 165 GELWSVDYDGQNLRP--------------------LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK 224 (428)
T ss_pred ceEEEEcCCCCCceE--------------------cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce
Confidence 367777877655432 333445667889999998633 33333 36888888887643
Q ss_pred eeeeeeecCCCCeeEEEEecCCCceEEEEEcC----CCcEEEEe-cC---CCeeeEecCCCcCEEEEeecccCCccEEEE
Q 001184 445 CQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD----DKLIRVWD-LS---GRKLFQFEGHEAPVYSVCPHQKENIHFIFS 516 (1130)
Q Consensus 445 ~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~----d~~v~iwd-~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s 516 (1130)
+ +....+.....+|||||+. ++++... |-.+.+|+ .. +.......++.......+|+ +||+.|+.
T Consensus 225 ~----lt~~~g~~~~p~wSPDG~~-Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wS--PDG~~Laf 297 (428)
T PRK01029 225 K----ILALQGNQLMPTFSPRKKL-LAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFS--PDGTRLVF 297 (428)
T ss_pred E----eecCCCCccceEECCCCCE-EEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEEC--CCCCEEEE
Confidence 2 3334445567899999995 3333332 33455577 33 23222232333344566775 56666665
Q ss_pred Ee-cCCcEEEEEc--cC-CcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeE
Q 001184 517 TA-VDGKIKAWLY--DN-VGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAG 592 (1130)
Q Consensus 517 ~s-~dg~i~vwd~--~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~ 592 (1130)
.+ .+|...+|.+ +. +.....+......+....|+|||+.|+..+. .++...|++||+.+++......+ ...+.
T Consensus 298 ~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~-~~g~~~I~v~dl~~g~~~~Lt~~--~~~~~ 374 (428)
T PRK01029 298 VSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSV-IKGVRQICVYDLATGRDYQLTTS--PENKE 374 (428)
T ss_pred EECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEc-CCCCcEEEEEECCCCCeEEccCC--CCCcc
Confidence 54 5676666654 32 2223334444456678899999999998764 23456899999998876544332 22456
Q ss_pred EEEEcCCCCEEEEEeC---CCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCC
Q 001184 593 VVQFDTTRNRILAAGE---DNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKE 643 (1130)
Q Consensus 593 ~~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~ 643 (1130)
...|+|||+.|+.... ...|+++|+.+++........+ .+...+|+|-
T Consensus 375 ~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g---~~~~p~Ws~~ 425 (428)
T PRK01029 375 SPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSG---EKRFPSWGAF 425 (428)
T ss_pred ceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCC---cccCceecCC
Confidence 6889999998876443 3578999998877655443222 4566778774
No 267
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.27 E-value=4.7e-10 Score=129.71 Aligned_cols=212 Identities=17% Similarity=0.137 Sum_probs=136.8
Q ss_pred eeeccCCCCEEEEEEecCCCeEEEEEeCc--CeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEc
Q 001184 341 ACTMHQGSSVVSMDFHPFHHTLLVVGCGD--GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWS 418 (1130)
Q Consensus 341 ~~~~~h~~~V~~v~fspdg~~llasg~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 418 (1130)
.....+...+.+.+|||||++++++...+ ..|++||+.+++... +..+.+.+.+++|+
T Consensus 183 ~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~--------------------~~~~~~~~~~~~~s 242 (417)
T TIGR02800 183 QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK--------------------VASFPGMNGAPAFS 242 (417)
T ss_pred EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE--------------------eecCCCCccceEEC
Confidence 33445777899999999999744443322 479999999876542 22345567789999
Q ss_pred CCCCEEEEE-eCCC--eEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEE-EcCCC--cEEEEecCCCeeeE
Q 001184 419 PDGNFIGVA-FTKH--LIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVT-CGDDK--LIRVWDLSGRKLFQ 492 (1130)
Q Consensus 419 pdg~~las~-~~d~--~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s-~s~d~--~v~iwd~~~~~~~~ 492 (1130)
|||+.|+.. +.++ .|.+||+.++... .+..+.......+|+|||+. |+. ...++ .|.++|..+.....
T Consensus 243 pDg~~l~~~~~~~~~~~i~~~d~~~~~~~----~l~~~~~~~~~~~~s~dg~~--l~~~s~~~g~~~iy~~d~~~~~~~~ 316 (417)
T TIGR02800 243 PDGSKLAVSLSKDGNPDIYVMDLDGKQLT----RLTNGPGIDTEPSWSPDGKS--IAFTSDRGGSPQIYMMDADGGEVRR 316 (417)
T ss_pred CCCCEEEEEECCCCCccEEEEECCCCCEE----ECCCCCCCCCCEEECCCCCE--EEEEECCCCCceEEEEECCCCCEEE
Confidence 999988754 4343 5888898876532 24445555667899999994 443 33333 57777854444555
Q ss_pred ecCCCcCEEEEeecccCCccEEEEEecCC---cEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEE
Q 001184 493 FEGHEAPVYSVCPHQKENIHFIFSTAVDG---KIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHL 569 (1130)
Q Consensus 493 ~~~h~~~v~~~~~~~~~~~~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 569 (1130)
+..+...+....|++ ++.+++.++.++ .|.+||+.+..... +... .......|+|||++|+..... ++...+
T Consensus 317 l~~~~~~~~~~~~sp--dg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~~-~~~~~p~~spdg~~l~~~~~~-~~~~~l 391 (417)
T TIGR02800 317 LTFRGGYNASPSWSP--DGDLIAFVHREGGGFNIAVMDLDGGGERV-LTDT-GLDESPSFAPNGRMILYATTR-GGRGVL 391 (417)
T ss_pred eecCCCCccCeEECC--CCCEEEEEEccCCceEEEEEeCCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEeC-CCcEEE
Confidence 555556666777754 557787777665 78888887644332 2222 223456899999999888752 234456
Q ss_pred EEeeCCCCceeEEEe
Q 001184 570 VEWNESEGALKRTYI 584 (1130)
Q Consensus 570 ~~wd~~~~~~~~~~~ 584 (1130)
++.+.. +.....+.
T Consensus 392 ~~~~~~-g~~~~~~~ 405 (417)
T TIGR02800 392 GLVSTD-GRFRARLP 405 (417)
T ss_pred EEEECC-CceeeECC
Confidence 666643 44444443
No 268
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.27 E-value=8.5e-09 Score=110.50 Aligned_cols=261 Identities=15% Similarity=0.117 Sum_probs=163.1
Q ss_pred CeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeC----------CCeEEEEEec
Q 001184 370 GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFT----------KHLIHLYTYQ 439 (1130)
Q Consensus 370 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~----------d~~i~vwd~~ 439 (1130)
++|.+.|..+++.+... -.+.... .+ +||||+.|.++.. +..|.+||..
T Consensus 27 ~~v~ViD~~~~~v~g~i------------------~~G~~P~--~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~ 85 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMT------------------DGGFLPN--PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ 85 (352)
T ss_pred ceEEEEECCCCEEEEEE------------------EccCCCc--ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECc
Confidence 79999999998877531 1122222 24 9999998887755 6889999999
Q ss_pred CCccceeeeeeec-C---CCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEeecccCCccEE
Q 001184 440 GSNDLCQSLEIDA-H---VGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFI 514 (1130)
Q Consensus 440 ~~~~~~~~~~~~~-h---~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l 514 (1130)
+.+.+.....-.. + ...-..++++|||+.+++.--+.+..|.+.| .+++.+.++.--. ...-+. ..+.. .
T Consensus 86 t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~---t~e~~-~ 160 (352)
T TIGR02658 86 THLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFP---TANDT-F 160 (352)
T ss_pred cCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEE---ecCCc-c
Confidence 9886653321000 1 2234578999999953222234489999999 8888887776322 111111 11111 2
Q ss_pred EEEecCCcEEEEEccCCcceee-----ecCCCccE-EEEEEec-CCCeEEEeeecCCCCcEEEEeeCCC-----CceeEE
Q 001184 515 FSTAVDGKIKAWLYDNVGSRVD-----YDAPGLWC-TTMLYSA-DGSRLFSCGTSKEGDSHLVEWNESE-----GALKRT 582 (1130)
Q Consensus 515 ~s~s~dg~i~vwd~~~~~~~~~-----~~~~~~~v-~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~~~-----~~~~~~ 582 (1130)
..-+.||......++....... +.....++ ..-.|.+ +|+++.+.. .|.|++.|+.. .+.+..
T Consensus 161 ~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~-----eG~V~~id~~~~~~~~~~~~~~ 235 (352)
T TIGR02658 161 FMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTY-----TGKIFQIDLSSGDAKFLPAIEA 235 (352)
T ss_pred EEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEec-----CCeEEEEecCCCcceecceeee
Confidence 2334566655544443332211 11100000 0014455 787777654 58999999543 333332
Q ss_pred Ee------cccCceeEEEEEcCCCCEEEEEe----------CCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCC-
Q 001184 583 YI------GFRKKSAGVVQFDTTRNRILAAG----------EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGN- 645 (1130)
Q Consensus 583 ~~------~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~- 645 (1130)
+. +.....+..++++++++++++.. ..+.|.++|..+++.+..+.... .+..++++||++
T Consensus 236 ~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~---~~~~iavS~Dgkp 312 (352)
T TIGR02658 236 FTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH---EIDSINVSQDAKP 312 (352)
T ss_pred ccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC---ceeeEEECCCCCe
Confidence 22 11222344599999999888843 22579999999999999887643 578999999999
Q ss_pred EEEEEe-CCCcEEEEEcCCC
Q 001184 646 LLVVTT-ADQGIKILANADG 664 (1130)
Q Consensus 646 ~l~~~~-~dg~i~iw~~~~~ 664 (1130)
+|++.. .++.|.++|..++
T Consensus 313 ~lyvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 313 LLYALSTGDKTLYIFDAETG 332 (352)
T ss_pred EEEEeCCCCCcEEEEECcCC
Confidence 887666 5788999999887
No 269
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.25 E-value=8.9e-10 Score=127.33 Aligned_cols=226 Identities=12% Similarity=0.063 Sum_probs=139.1
Q ss_pred eeeeccCCCCEEEEEEecCCCeEEEEEeCc--CeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEE
Q 001184 340 VACTMHQGSSVVSMDFHPFHHTLLVVGCGD--GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAW 417 (1130)
Q Consensus 340 ~~~~~~h~~~V~~v~fspdg~~llasg~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 417 (1130)
......+...+...+|||||++++++...+ ..|.+||+.+++... +....+.+...+|
T Consensus 191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------------------l~~~~g~~~~~~~ 250 (430)
T PRK00178 191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------------------ITNFEGLNGAPAW 250 (430)
T ss_pred ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------------ccCCCCCcCCeEE
Confidence 344456788899999999999755554333 369999999886543 1222334557899
Q ss_pred cCCCCEEEEE-eCCC--eEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCC--cEEEEe-cCCCeee
Q 001184 418 SPDGNFIGVA-FTKH--LIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK--LIRVWD-LSGRKLF 491 (1130)
Q Consensus 418 spdg~~las~-~~d~--~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~--~v~iwd-~~~~~~~ 491 (1130)
||||+.|+.. +.++ .|.+||+.+++.. .+..+........|+|||+. ++++...++ .|.++| .+++ ..
T Consensus 251 SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~~spDg~~-i~f~s~~~g~~~iy~~d~~~g~-~~ 324 (430)
T PRK00178 251 SPDGSKLAFVLSKDGNPEIYVMDLASRQLS----RVTNHPAIDTEPFWGKDGRT-LYFTSDRGGKPQIYKVNVNGGR-AE 324 (430)
T ss_pred CCCCCEEEEEEccCCCceEEEEECCCCCeE----EcccCCCCcCCeEECCCCCE-EEEEECCCCCceEEEEECCCCC-EE
Confidence 9999988754 4444 6888899887532 24455666778899999995 334444444 567777 4444 33
Q ss_pred EecCCCcCEEEEeecccCCccEEEEEec-CC--cEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcE
Q 001184 492 QFEGHEAPVYSVCPHQKENIHFIFSTAV-DG--KIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSH 568 (1130)
Q Consensus 492 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 568 (1130)
.+...........|+ ++++.++..+. ++ .|.+||+.++..... .. ........|+|||+.++..+. ..+...
T Consensus 325 ~lt~~~~~~~~~~~S--pdg~~i~~~~~~~~~~~l~~~dl~tg~~~~l-t~-~~~~~~p~~spdg~~i~~~~~-~~g~~~ 399 (430)
T PRK00178 325 RVTFVGNYNARPRLS--ADGKTLVMVHRQDGNFHVAAQDLQRGSVRIL-TD-TSLDESPSVAPNGTMLIYATR-QQGRGV 399 (430)
T ss_pred EeecCCCCccceEEC--CCCCEEEEEEccCCceEEEEEECCCCCEEEc-cC-CCCCCCceECCCCCEEEEEEe-cCCceE
Confidence 333222223344565 45567766654 33 477888877654332 22 122235689999999988764 233567
Q ss_pred EEEeeCCCCceeEEEecccCceeEEEEEcC
Q 001184 569 LVEWNESEGALKRTYIGFRKKSAGVVQFDT 598 (1130)
Q Consensus 569 i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 598 (1130)
|++++.. +...+.+... .+.+...+|+|
T Consensus 400 l~~~~~~-g~~~~~l~~~-~g~~~~p~ws~ 427 (430)
T PRK00178 400 LMLVSIN-GRVRLPLPTA-QGEVREPSWSP 427 (430)
T ss_pred EEEEECC-CCceEECcCC-CCCcCCCccCC
Confidence 8888875 3333344432 22445555655
No 270
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.24 E-value=1.5e-08 Score=103.55 Aligned_cols=253 Identities=12% Similarity=0.210 Sum_probs=171.4
Q ss_pred CCCCceeEEEEecCCCEEEEEe----CCeEEEEECCC--ceeE--EEEeCCCCCeEEEEEeCCCCcEEEEEeC-CCcEEE
Q 001184 831 NAEDVVPCVALSKNDSYVMSAG----GGKVSLFNMMN--FKVM--TTFMSPPPASTFLAFHPQDNNIIAIGME-DSTIQI 901 (1130)
Q Consensus 831 ~~~~~i~~l~~s~dg~~la~~~----dg~i~iwd~~~--~~~~--~~~~~~~~~i~~l~~sp~~~~~lasg~~-dg~v~i 901 (1130)
......+-++++|+++.|.++. .|.|..|.++. |++. ........+-..+++++ ++++|+++.. .|.|.+
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~-~g~~vf~AnY~~g~v~v 115 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE-DGRFVFVANYHSGSVSV 115 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC-CCCEEEEEEccCceEEE
Confidence 3566788899999999998875 36677776654 4443 22223334458899999 8888888775 478999
Q ss_pred EEeec-CeEEE--EEecCCCC----------eeEEEEccCCCeEEEEeC-CCcEEEEECCCCcccceeeEeccCCCCCCC
Q 001184 902 YNVRV-DEVKT--KLKGHQKH----------ITGLAFSTNLNILVSSGS-DAQLIFWNTDTWEKRKSIAIQLPAGKLPVG 967 (1130)
Q Consensus 902 wd~~~-~~~~~--~l~~h~~~----------V~~l~~s~dg~~L~s~s~-Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 967 (1130)
+-++. |.+.. .+..|.+. +....+.|++++|++.+- --.|.+|+++.+............+ .+
T Consensus 116 ~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G---~G 192 (346)
T COG2706 116 YPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPG---AG 192 (346)
T ss_pred EEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCC---CC
Confidence 99965 43321 22335555 888999999999998764 2359999999877655555554333 77
Q ss_pred eEEEEEcCCCcEEEE-E-cCCcEEEEECCCc-eeeeeeec------CCCCCCCeEEEEECCCCCEEEEEeC-CCcEEEEe
Q 001184 968 ETRVQFHSDQVRLLV-N-HETQLAIYDGSKM-ECIRQWVP------QDVLSSPISSAAYSCNSQLIYATFT-DGSIGVFD 1037 (1130)
Q Consensus 968 v~~~~~s~d~~~l~~-~-~d~~i~v~d~~~~-~~~~~~~~------~~~~~~~v~~v~~s~dg~~l~t~~~-Dg~i~vwd 1037 (1130)
...|.|+|+++++.+ . -+++|.+|..... ..+..+.. .-.-.....+|.+++||++|.++.. ...|.+|.
T Consensus 193 PRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~ 272 (346)
T COG2706 193 PRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFS 272 (346)
T ss_pred cceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEE
Confidence 899999999998887 3 4899999998763 22222221 1112457788999999999998873 35788886
Q ss_pred CCC--cccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeC-CCcEEEEeCCCCcc
Q 001184 1038 ADS--LRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLT-DGSVKVIEPSETER 1097 (1130)
Q Consensus 1038 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-Dg~v~vW~~~~~~~ 1097 (1130)
+.. +++...-.. ..+...+-.+.++|. +++|+++.. +.+|.++.+.....
T Consensus 273 V~~~~g~L~~~~~~---------~teg~~PR~F~i~~~-g~~Liaa~q~sd~i~vf~~d~~TG 325 (346)
T COG2706 273 VDPDGGKLELVGIT---------PTEGQFPRDFNINPS-GRFLIAANQKSDNITVFERDKETG 325 (346)
T ss_pred EcCCCCEEEEEEEe---------ccCCcCCccceeCCC-CCEEEEEccCCCcEEEEEEcCCCc
Confidence 653 332211110 123344556888885 667777776 44799999876554
No 271
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.23 E-value=4.7e-10 Score=112.25 Aligned_cols=350 Identities=15% Similarity=0.187 Sum_probs=206.3
Q ss_pred eeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe--cCCCeeeEec-CCCcCEEEEeecccCCccEEEEEecCCcEEE
Q 001184 449 EIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQFE-GHEAPVYSVCPHQKENIHFIFSTAVDGKIKA 525 (1130)
Q Consensus 449 ~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd--~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~v 525 (1130)
.++||.+.|++...-|-.. -+++.+.|.++|||- ..++.-..+. .-..+++++.+. .+...|+.|-..|++.-
T Consensus 19 ~~eG~~d~vn~~~l~~~e~--gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~--~e~~~L~vg~~ngtvte 94 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIPKEE--GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYV--SESRRLYVGQDNGTVTE 94 (404)
T ss_pred hhcCchhhhhhheeccCCC--CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeee--ccceEEEEEEecceEEE
Confidence 5789999999988888777 589999999999998 3343333332 223456666654 45578999999999988
Q ss_pred EEcc----CCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCC
Q 001184 526 WLYD----NVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRN 601 (1130)
Q Consensus 526 wd~~----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 601 (1130)
+.+. ..........|...+..+.|+.....+++++. |..+.---.+.+..+..+.-... ..+..+.- .
T Consensus 95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~----dk~~~~hc~e~~~~lg~Y~~~~~--~t~~~~d~--~ 166 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGK----DKQFAWHCTESGNRLGGYNFETP--ASALQFDA--L 166 (404)
T ss_pred EEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEecc----ccceEEEeeccCCcccceEeecc--CCCCceee--E
Confidence 8543 33444456677888999999999999999875 44443222333433322221110 01111111 1
Q ss_pred EEEEEeCCCcEEEEeCCC--CceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccc
Q 001184 602 RILAAGEDNQIKFWDMDN--VNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETS 679 (1130)
Q Consensus 602 ~l~~~~~dg~i~vwd~~~--~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 679 (1130)
+.+.|...|.|.+-.+.. -.++.++.. +...+.++.|.+....|++|..|..+.+||+.........+
T Consensus 167 ~~fvGd~~gqvt~lr~~~~~~~~i~~~~~--h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el-------- 236 (404)
T KOG1409|consen 167 YAFVGDHSGQITMLKLEQNGCQLITTFNG--HTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYEL-------- 236 (404)
T ss_pred EEEecccccceEEEEEeecCCceEEEEcC--cccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeee--------
Confidence 455566667766665544 344555554 45589999999999999999999999999986542222222
Q ss_pred cccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEE
Q 001184 680 RASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVA 759 (1130)
Q Consensus 680 ~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~ 759 (1130)
T Consensus 237 -------------------------------------------------------------------------------- 236 (404)
T KOG1409|consen 237 -------------------------------------------------------------------------------- 236 (404)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcc-----ccccccccccc------CCCCcceeccC
Q 001184 760 MPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGK-----ATAAVAPQHWQ------PSNGLLMTNDV 828 (1130)
Q Consensus 760 ~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~-----~~~~~~~~~w~------~~~~~~~~~~~ 828 (1130)
.+|...+..+.+.+--+.+++++.||.|.+|+++........- ...-.++..|+ ...-.+.....
T Consensus 237 ----~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~c 312 (404)
T KOG1409|consen 237 ----QGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHC 312 (404)
T ss_pred ----ccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhh
Confidence 1255566666666667778888888888888876532211111 11111222232 22111111100
Q ss_pred CCCCCCceeEEEEecCCCEEEEEeCCeEEEEECC-------CceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEE
Q 001184 829 PENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMM-------NFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQI 901 (1130)
Q Consensus 829 ~~~~~~~i~~l~~s~dg~~la~~~dg~i~iwd~~-------~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~i 901 (1130)
+ .-...+...+-+....+...|..-.+|+-|.- +...+..+..-...|+++.+.. ...+|++++.|..|+|
T Consensus 313 r-kcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqe-tlglLvTsG~~Rvi~i 390 (404)
T KOG1409|consen 313 R-KCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQE-TLGLLVTSGTDRVIKI 390 (404)
T ss_pred h-hhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhh-hccceeecCCceEEEE
Confidence 0 00111222222222223333333345555431 1122333333345689999888 6778999999999999
Q ss_pred EEeec
Q 001184 902 YNVRV 906 (1130)
Q Consensus 902 wd~~~ 906 (1130)
||+..
T Consensus 391 wd~~~ 395 (404)
T KOG1409|consen 391 WDVRS 395 (404)
T ss_pred Eechh
Confidence 99863
No 272
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=6.2e-09 Score=110.70 Aligned_cols=287 Identities=14% Similarity=0.215 Sum_probs=183.9
Q ss_pred CCCCEEEEEEecCCCeEEEEEeC-----------cCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCG-----------DGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSR 414 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 414 (1130)
|. .|.-+.|||+.+| |++-+. ...++|||+.+|...+. |.+ +++....-.-
T Consensus 249 Hp-~Vq~idfSP~EkY-LVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrs--F~~--------------~~~~~~~WP~ 310 (698)
T KOG2314|consen 249 HP-GVQFIDFSPNEKY-LVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRS--FPV--------------IKSPYLKWPI 310 (698)
T ss_pred CC-CceeeecCCccce-EEEecCCccccCcccCCCceEEEEEccccchhcc--eec--------------cCCCccccce
Confidence 44 6899999999996 676442 14699999999988763 221 1222222334
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcC--C---CcEEEEe-cCCC
Q 001184 415 VAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD--D---KLIRVWD-LSGR 488 (1130)
Q Consensus 415 v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~--d---~~v~iwd-~~~~ 488 (1130)
+.||.|++|+|--..| .|.||+..+-..+. ...+ .-..|....|+|.+. +||--.. + ..+.+-. .+++
T Consensus 311 frWS~DdKy~Arm~~~-sisIyEtpsf~lld-~Ksl--ki~gIr~FswsP~~~--llAYwtpe~~~~parvtL~evPs~~ 384 (698)
T KOG2314|consen 311 FRWSHDDKYFARMTGN-SISIYETPSFMLLD-KKSL--KISGIRDFSWSPTSN--LLAYWTPETNNIPARVTLMEVPSKR 384 (698)
T ss_pred EEeccCCceeEEeccc-eEEEEecCceeeec-cccc--CCccccCcccCCCcc--eEEEEcccccCCcceEEEEecCccc
Confidence 7899999999988775 59999876632221 1111 123588899999988 5553222 1 2345555 5555
Q ss_pred eeeEecCCCcCEEEEeecccCCccEEEEE----------ecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEE
Q 001184 489 KLFQFEGHEAPVYSVCPHQKENIHFIFST----------AVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFS 558 (1130)
Q Consensus 489 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~----------s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 558 (1130)
.+++-.-| .|..+..+...+|.+|..- +.-..+.|+.++..........-...|...+|-|.|+.+++
T Consensus 385 ~iRt~nlf--nVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~v 462 (698)
T KOG2314|consen 385 EIRTKNLF--NVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAV 462 (698)
T ss_pred eeeeccce--eeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEE
Confidence 55544333 2444444445556666432 11224566666665555544445567889999999999887
Q ss_pred eeecCCCCcEEEEeeCCC-C---ceeEEEecccCceeEEEEEcCCCCEEEEE---eCCCcEEEEeCCCCceeEEEeccCC
Q 001184 559 CGTSKEGDSHLVEWNESE-G---ALKRTYIGFRKKSAGVVQFDTTRNRILAA---GEDNQIKFWDMDNVNMLTSTEAEGG 631 (1130)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~-~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~dg~i~vwd~~~~~~~~~~~~~~~ 631 (1130)
.+. .+...++.+|..++ . .++..+.. ...+.+.|+|.|++++.+ |..|.+.++|+.......+- ...|
T Consensus 463 i~g-~~~k~tvsfY~~e~~~~~~~lVk~~dk---~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~-~~eh 537 (698)
T KOG2314|consen 463 ISG-NTVKNTVSFYAVETNIKKPSLVKELDK---KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTA-SPEH 537 (698)
T ss_pred EEc-cccccceeEEEeecCCCchhhhhhhcc---cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhcc-Cccc
Confidence 763 34467888888773 2 23344432 256679999999988875 46789999998753322221 1122
Q ss_pred CCCcceEEEcCCCCEEEEEeC------CCcEEEEEcCCC
Q 001184 632 LPSLPRLRFNKEGNLLVVTTA------DQGIKILANADG 664 (1130)
Q Consensus 632 ~~~i~~v~~s~~~~~l~~~~~------dg~i~iw~~~~~ 664 (1130)
. ..+.+.|.|.|+++++++. |...+||+....
T Consensus 538 ~-~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGr 575 (698)
T KOG2314|consen 538 F-AATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGR 575 (698)
T ss_pred c-ccccceECCCCCEEEEeeehhhhccccceEEEEeecH
Confidence 2 4688999999999999875 556788888665
No 273
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.15 E-value=5.5e-09 Score=112.91 Aligned_cols=193 Identities=13% Similarity=0.171 Sum_probs=150.4
Q ss_pred cCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEe------c------------CCCceEEEEEcCCCc
Q 001184 418 SPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFS------Y------------PNKQLCIVTCGDDKL 479 (1130)
Q Consensus 418 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s------~------------d~~~l~l~s~s~d~~ 479 (1130)
.|-+.|+|....||.+++||...++..........-.+.-++..|. | .+...+++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 3456799999999999999998876433222222223344444542 1 112237888999999
Q ss_pred EEEEe-cCCCeeeEec--CCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeE
Q 001184 480 IRVWD-LSGRKLFQFE--GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRL 556 (1130)
Q Consensus 480 v~iwd-~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 556 (1130)
|.+|+ ..|+.-..+. .|.++|+++.++. +-..|.+++.|+.+..|+.........+......+.+++++|||..+
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~--~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l 159 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQ--RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKIL 159 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeeccc--ccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEE
Confidence 99999 7787777776 6999999998753 44689999999999999999988888888888889999999999999
Q ss_pred EEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCC-----CCEEEE-EeCCCcEEEEeCCC
Q 001184 557 FSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTT-----RNRILA-AGEDNQIKFWDMDN 619 (1130)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~-~~~dg~i~vwd~~~ 619 (1130)
+++ .++|.+||+++++.+..|.||.. +|+++.|... |.++++ ...+..+.+|-...
T Consensus 160 ~~a------s~~ik~~~~~~kevv~~ftgh~s-~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 160 LTA------SRQIKVLDIETKEVVITFTGHGS-PVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred Eec------cceEEEEEccCceEEEEecCCCc-ceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 998 46899999999999999999766 8999998876 666666 44566677886654
No 274
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.13 E-value=1.1e-08 Score=110.73 Aligned_cols=192 Identities=17% Similarity=0.288 Sum_probs=147.1
Q ss_pred cCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEE-------------------
Q 001184 357 PFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAW------------------- 417 (1130)
Q Consensus 357 pdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~------------------- 417 (1130)
|-+. ++|....||.++|||..+++......- ...-++.-++..|
T Consensus 3 ~~~~-~~A~~~~~g~l~iw~t~~~~~~~e~~p----------------~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~ 65 (541)
T KOG4547|consen 3 PALD-YFALSTGDGRLRIWDTAKNQLQQEFAP----------------IASLSGTCTYTKWGLSADYSPMKWLSLEKAKK 65 (541)
T ss_pred chhh-eEeecCCCCeEEEEEccCceeeeeecc----------------chhccCcceeEEEEEEeccchHHHHhHHHHhh
Confidence 3344 588889999999999998876542110 0011122223332
Q ss_pred -cCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecC
Q 001184 418 -SPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEG 495 (1130)
Q Consensus 418 -spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~ 495 (1130)
+.|-..||-|...|.|.+|++..|+.. ....-..|.+.|.++.++.+-. .|.|++.|+.+..|+ ..+..++.+.+
T Consensus 66 ~s~~t~~lvlgt~~g~v~~ys~~~g~it-~~~st~~h~~~v~~~~~~~~~~--ciyS~~ad~~v~~~~~~~~~~~~~~~~ 142 (541)
T KOG4547|consen 66 ASLDTSMLVLGTPQGSVLLYSVAGGEIT-AKLSTDKHYGNVNEILDAQRLG--CIYSVGADLKVVYILEKEKVIIRIWKE 142 (541)
T ss_pred ccCCceEEEeecCCccEEEEEecCCeEE-EEEecCCCCCcceeeecccccC--ceEecCCceeEEEEecccceeeeeecc
Confidence 223447788889999999999998743 3334468999999999998888 799999999999999 88888899999
Q ss_pred CCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecC-----CCeEEEeeecCCCCcEEE
Q 001184 496 HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSAD-----GSRLFSCGTSKEGDSHLV 570 (1130)
Q Consensus 496 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~~~~~~~~~~~~i~ 570 (1130)
....+.++++.+ |+.++++++ +.|++||+++.+....+.+|..+|+++.|..+ |.++++... ...-+.
T Consensus 143 ~~~~~~sl~is~--D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~---~~r~i~ 215 (541)
T KOG4547|consen 143 QKPLVSSLCISP--DGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAA---AERGIT 215 (541)
T ss_pred CCCccceEEEcC--CCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccc---ccccee
Confidence 889999999865 568888876 78999999999999999999999999999887 778777542 244566
Q ss_pred EeeCC
Q 001184 571 EWNES 575 (1130)
Q Consensus 571 ~wd~~ 575 (1130)
+|-..
T Consensus 216 ~w~v~ 220 (541)
T KOG4547|consen 216 VWVVE 220 (541)
T ss_pred EEEEE
Confidence 66543
No 275
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.13 E-value=3.4e-08 Score=112.09 Aligned_cols=305 Identities=11% Similarity=0.043 Sum_probs=180.9
Q ss_pred cEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCcee
Q 001184 512 HFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSA 591 (1130)
Q Consensus 512 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v 591 (1130)
..++.++.+|.+..+|..+++................ .++..+++++. ++.++.+|..+|+.+....... .+
T Consensus 66 ~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~----~g~l~ald~~tG~~~W~~~~~~--~~ 137 (377)
T TIGR03300 66 GKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTE----KGEVIALDAEDGKELWRAKLSS--EV 137 (377)
T ss_pred CEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcC----CCEEEEEECCCCcEeeeeccCc--ee
Confidence 5788888889999999888887776655443222222 24666766654 7899999999999887655322 22
Q ss_pred EE-EEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCC---cceEEEcCCCCEEEEEeCCCcEEEEEcCCCchh
Q 001184 592 GV-VQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPS---LPRLRFNKEGNLLVVTTADQGIKILANADGLRA 667 (1130)
Q Consensus 592 ~~-~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~---i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 667 (1130)
.+ ..+ .+..++.++.+|.|+.||.++|+.+........... ....... +..++.+..++.+..+|..++...
T Consensus 138 ~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~ 213 (377)
T TIGR03300 138 LSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPL 213 (377)
T ss_pred ecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEe
Confidence 21 112 345788888899999999999998877654332100 0111121 246777888899999998877322
Q ss_pred hhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeec
Q 001184 668 LRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELT 747 (1130)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~ 747 (1130)
...-... |. + .. ...++.+.
T Consensus 214 W~~~~~~-----------------------~~-----------------------------g------~~-~~~~~~~~- 233 (377)
T TIGR03300 214 WEQRVAL-----------------------PK-----------------------------G------RT-ELERLVDV- 233 (377)
T ss_pred eeecccc-----------------------CC-----------------------------C------CC-chhhhhcc-
Confidence 2100000 00 0 00 00000000
Q ss_pred cccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceecc
Q 001184 748 EIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTND 827 (1130)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 827 (1130)
. ....+ .+..+++++.+|.+..+|...++ .+|....+
T Consensus 234 ------------------~----~~p~~--~~~~vy~~~~~g~l~a~d~~tG~-------------~~W~~~~~------ 270 (377)
T TIGR03300 234 ------------------D----GDPVV--DGGQVYAVSYQGRVAALDLRSGR-------------VLWKRDAS------ 270 (377)
T ss_pred ------------------C----CccEE--ECCEEEEEEcCCEEEEEECCCCc-------------EEEeeccC------
Confidence 0 00011 14457777778888877654321 22332210
Q ss_pred CCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeCC-CCCeEEEEEeCCCCcEEEEEeCCCcEEEEEee
Q 001184 828 VPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSP-PPASTFLAFHPQDNNIIAIGMEDSTIQIYNVR 905 (1130)
Q Consensus 828 ~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~-~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~ 905 (1130)
. ....+ .++..+++++ +|.+..+|..+++.+...... .....+... .+..|++++.+|.|+++|..
T Consensus 271 ---~----~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i---~g~~l~~~~~~G~l~~~d~~ 338 (377)
T TIGR03300 271 ---S----YQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV---VGGYLVVGDFEGYLHWLSRE 338 (377)
T ss_pred ---C----ccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE---ECCEEEEEeCCCEEEEEECC
Confidence 0 11122 2344555555 899999999999887665321 222233333 23477889999999999999
Q ss_pred cCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEE
Q 001184 906 VDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFW 944 (1130)
Q Consensus 906 ~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vw 944 (1130)
+++.+.+++.+...+..--...+ +.|+.++.||.|+.+
T Consensus 339 tG~~~~~~~~~~~~~~~sp~~~~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 339 DGSFVARLKTDGSGIASPPVVVG-DGLLVQTRDGDLYAF 376 (377)
T ss_pred CCCEEEEEEcCCCccccCCEEEC-CEEEEEeCCceEEEe
Confidence 99999998876654433222223 468889999988765
No 276
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.09 E-value=7.6e-10 Score=132.56 Aligned_cols=202 Identities=18% Similarity=0.287 Sum_probs=159.2
Q ss_pred eccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCC
Q 001184 343 TMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN 422 (1130)
Q Consensus 343 ~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~ 422 (1130)
..++-..|.++.=+|...+ .++|+.||.|++|.+..+..+.. |+. .|. ..|+.+.|+.+|.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~-Yltgs~dgsv~~~~w~~~~~v~~-----~rt------------~g~-s~vtr~~f~~qGn 2264 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPY-YLTGSQDGSVRMFEWGHGQQVVC-----FRT------------AGN-SRVTRSRFNHQGN 2264 (2439)
T ss_pred eecccCceeeecCCCCCce-EEecCCCceEEEEeccCCCeEEE-----eec------------cCc-chhhhhhhcccCC
Confidence 3456789999999999884 78999999999999998877652 221 133 7899999999999
Q ss_pred EEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEc---CCCcEEEEe--cCCCeeeEecCCC
Q 001184 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCG---DDKLIRVWD--LSGRKLFQFEGHE 497 (1130)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s---~d~~v~iwd--~~~~~~~~~~~h~ 497 (1130)
.+..+..||.+.+|.+.. +.....+.|.....+..|-. . .+++++ .++.+.+|| ..+..-..-..|.
T Consensus 2265 k~~i~d~dg~l~l~q~~p----k~~~s~qchnk~~~Df~Fi~--s--~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~ 2336 (2439)
T KOG1064|consen 2265 KFGIVDGDGDLSLWQASP----KPYTSWQCHNKALSDFRFIG--S--LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHD 2336 (2439)
T ss_pred ceeeeccCCceeecccCC----cceeccccCCccccceeeee--h--hhhccccCCCCCcccchhcccCcccceeeeecC
Confidence 999999999999999873 34446788999999999986 3 466654 578999999 4443333337899
Q ss_pred cCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCC
Q 001184 498 APVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG 577 (1130)
Q Consensus 498 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1130)
+.++++++.|.. ++|++||.+|.|++||++..+.+..+.. +. ...++++++. .|.+.||++...
T Consensus 2337 ~gaT~l~~~P~~--qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss----~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2337 GGATVLAYAPKH--QLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSS----EGNIKIWRLSEF 2400 (2439)
T ss_pred CCceEEEEcCcc--eEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCc----ccceEEEEcccc
Confidence 999999997655 7999999999999999998777665543 23 4557777765 899999999988
Q ss_pred ceeEEEeccc
Q 001184 578 ALKRTYIGFR 587 (1130)
Q Consensus 578 ~~~~~~~~~~ 587 (1130)
..+.++...+
T Consensus 2401 ~ll~~~p~e~ 2410 (2439)
T KOG1064|consen 2401 GLLHTFPSEH 2410 (2439)
T ss_pred chhhcCchhh
Confidence 8877776543
No 277
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.05 E-value=1.1e-09 Score=115.58 Aligned_cols=241 Identities=14% Similarity=0.249 Sum_probs=172.8
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCC-ccc---eeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCc
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGS-NDL---CQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKL 479 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~-~~~---~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~ 479 (1130)
.+.||...|..++--.+.+-+++++.|++|++|.++.. ..+ ....++..|+.+|.++.|..+-+ .++++ |+.
T Consensus 730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr--~i~Sc--D~g 805 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR--SIASC--DGG 805 (1034)
T ss_pred cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc--eeeec--cCc
Confidence 47899999999988888889999999999999999642 222 24567889999999999999988 66666 899
Q ss_pred EEEEe-cCCCeeeEec-----CCCcCEEEEeecccCCccEEEEE-ecCCcEEEEEccCCcceeeec-----CCCccEEEE
Q 001184 480 IRVWD-LSGRKLFQFE-----GHEAPVYSVCPHQKENIHFIFST-AVDGKIKAWLYDNVGSRVDYD-----APGLWCTTM 547 (1130)
Q Consensus 480 v~iwd-~~~~~~~~~~-----~h~~~v~~~~~~~~~~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~-----~~~~~v~~~ 547 (1130)
|++|| .-|+.+.... +..+.|.++ ++-+..+++.+ +...+|+++|.+..+-..++. +...-+.++
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl---~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~i 882 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCL---ENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAI 882 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEec---ccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEE
Confidence 99999 8887765432 222344444 33344555555 788999999998876554432 344568999
Q ss_pred EEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEE-EeCCCCceeEEE
Q 001184 548 LYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKF-WDMDNVNMLTST 626 (1130)
Q Consensus 548 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v-wd~~~~~~~~~~ 626 (1130)
+..+.|+.++++-. .|.|.+.|.++|+.+..+..... ....++ .|..+.++....|.++.+ |..-.+....+.
T Consensus 883 aVa~~GN~lAa~LS----nGci~~LDaR~G~vINswrpmec-dllqla-apsdq~L~~saldHslaVnWhaldgimh~q~ 956 (1034)
T KOG4190|consen 883 AVADKGNKLAAALS----NGCIAILDARNGKVINSWRPMEC-DLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQD 956 (1034)
T ss_pred EeccCcchhhHHhc----CCcEEEEecCCCceeccCCcccc-hhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeecc
Confidence 99999999998875 89999999999998877664332 122222 345567777778889988 988777665554
Q ss_pred eccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001184 627 EAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1130)
Q Consensus 627 ~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~ 661 (1130)
+.+.. ..--...-|..++++...+.+.+|.-
T Consensus 957 kpppe----pahflqsvgpSLV~a~~Gn~lgVYad 987 (1034)
T KOG4190|consen 957 KPPPE----PAHFLQSVGPSLVTAQNGNILGVYAD 987 (1034)
T ss_pred CCCCc----chhhhhccCceeEEeccCcEEEEEec
Confidence 43321 11111123667888888888888853
No 278
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.03 E-value=4.9e-08 Score=108.70 Aligned_cols=190 Identities=12% Similarity=0.208 Sum_probs=115.4
Q ss_pred EEEEEecCCCeEEEEEeC----cCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEE
Q 001184 351 VSMDFHPFHHTLLVVGCG----DGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGV 426 (1130)
Q Consensus 351 ~~v~fspdg~~llasg~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las 426 (1130)
+-..|+|... ++|+++- .|+|.||- ++|+.-+.. ...- .+++++|+|..-.||.
T Consensus 19 ti~SWHPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~V-----------------t~P~---hatSLCWHpe~~vLa~ 76 (1416)
T KOG3617|consen 19 TISSWHPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDV-----------------TYPV---HATSLCWHPEEFVLAQ 76 (1416)
T ss_pred cccccCCCCc-eeEEEEecCCCCceEEEEe-cCCCCCccc-----------------ccce---ehhhhccChHHHHHhh
Confidence 3447888887 6777653 47888884 456643311 1112 3667999999999999
Q ss_pred EeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe--cCCCeee-EecCCC--cCEE
Q 001184 427 AFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLF-QFEGHE--APVY 501 (1130)
Q Consensus 427 ~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd--~~~~~~~-~~~~h~--~~v~ 501 (1130)
|-.-|.+.+|...+.+.- .....|..+|..+.||++|. .++|+..-|.|.+|. ..|+... .+..|. ..++
T Consensus 77 gwe~g~~~v~~~~~~e~h---tv~~th~a~i~~l~wS~~G~--~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~lt 151 (1416)
T KOG3617|consen 77 GWEMGVSDVQKTNTTETH---TVVETHPAPIQGLDWSHDGT--VLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLT 151 (1416)
T ss_pred ccccceeEEEecCCceee---eeccCCCCCceeEEecCCCC--eEEEcCCCceeEEEEeeeccccccchhhhhHhhceee
Confidence 999999999998775422 23457999999999999999 899999999999998 3344321 111232 3344
Q ss_pred EEeecccCCcc------EEEEEecCCcEE-EEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeC
Q 001184 502 SVCPHQKENIH------FIFSTAVDGKIK-AWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNE 574 (1130)
Q Consensus 502 ~~~~~~~~~~~------~l~s~s~dg~i~-vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1130)
-.||.-..++. ..+..+++..+- .++.+.......... .=.|+|..++.++. +|+|+-.|-
T Consensus 152 l~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~k--------sgv~~g~~F~~~~~----~GtVyyvdq 219 (1416)
T KOG3617|consen 152 LWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEK--------SGVPKGTEFLFAGK----SGTVYYVDQ 219 (1416)
T ss_pred EEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccccc--------cCCCCCcEEEEEcC----CceEEEEcC
Confidence 44443333211 123334443332 333321111111110 11467777777775 788887773
Q ss_pred CCCcee
Q 001184 575 SEGALK 580 (1130)
Q Consensus 575 ~~~~~~ 580 (1130)
.|+..
T Consensus 220 -~g~~~ 224 (1416)
T KOG3617|consen 220 -NGRQR 224 (1416)
T ss_pred -CCcEE
Confidence 34433
No 279
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.01 E-value=2e-07 Score=116.88 Aligned_cols=257 Identities=11% Similarity=0.103 Sum_probs=158.9
Q ss_pred eEEEEecCCC-EEEEEe-CCeEEEEECCCceeEEEEeC--C------------CCCeEEEEEeCCCCcEEEEE-eCCCcE
Q 001184 837 PCVALSKNDS-YVMSAG-GGKVSLFNMMNFKVMTTFMS--P------------PPASTFLAFHPQDNNIIAIG-MEDSTI 899 (1130)
Q Consensus 837 ~~l~~s~dg~-~la~~~-dg~i~iwd~~~~~~~~~~~~--~------------~~~i~~l~~sp~~~~~lasg-~~dg~v 899 (1130)
..+++++++. ++++-. ++.|++||..+. .+..+.+ . -.....+++.+ ++..|+++ ..++.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~-~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN-FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCC-EEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCceE
Confidence 5688987654 444444 688999998654 3433332 1 12357899998 55555444 455789
Q ss_pred EEEEeecCeEEEEEecC-----------------CCCeeEEEEcc-CCCeEEEEeCCCcEEEEECCCCcccceee---Ee
Q 001184 900 QIYNVRVDEVKTKLKGH-----------------QKHITGLAFST-NLNILVSSGSDAQLIFWNTDTWEKRKSIA---IQ 958 (1130)
Q Consensus 900 ~iwd~~~~~~~~~l~~h-----------------~~~V~~l~~s~-dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~---~~ 958 (1130)
+++|..++.. .++.+- -..-+.++++| ++..+++.+.++.|++||..++....... ..
T Consensus 649 r~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 649 REIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 9999887653 333210 11236799999 55666777788999999988754321000 00
Q ss_pred ccCC-----CCCCCeEEEEEcCCCcEEEE--EcCCcEEEEECCCceeeeeeec-------------CCC-----CCCCeE
Q 001184 959 LPAG-----KLPVGETRVQFHSDQVRLLV--NHETQLAIYDGSKMECIRQWVP-------------QDV-----LSSPIS 1013 (1130)
Q Consensus 959 ~~~~-----~~~~~v~~~~~s~d~~~l~~--~~d~~i~v~d~~~~~~~~~~~~-------------~~~-----~~~~v~ 1013 (1130)
...+ ..-.....++++|++..|++ +.++.|++||+.++.......+ ..+ .-..-.
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 0000 01134567999999986655 4578999999987653211100 000 011336
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCc--ccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEe
Q 001184 1014 SAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSA--YMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIE 1091 (1130)
Q Consensus 1014 ~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~ 1091 (1130)
+++++++|.++++-+.+++|++||..++.......... +.......+.-..+..+++++ +++++++-+.+++|++||
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEEE
Confidence 89999999988888889999999998877553322110 000000011112455677777 578899988999999999
Q ss_pred CCCCcc
Q 001184 1092 PSETER 1097 (1130)
Q Consensus 1092 ~~~~~~ 1097 (1130)
+.+++.
T Consensus 887 ~~~~~~ 892 (1057)
T PLN02919 887 LNKGEA 892 (1057)
T ss_pred CCCCcc
Confidence 988764
No 280
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.98 E-value=9.3e-08 Score=94.19 Aligned_cols=192 Identities=18% Similarity=0.101 Sum_probs=135.4
Q ss_pred CCCCEEEEEEec---CCCeEEEEEeCcCeEEEEeCCCCceeec-ccceeeeccccccceeeeeecCCCccEEEEEEcCCC
Q 001184 346 QGSSVVSMDFHP---FHHTLLVVGCGDGEITLWDVGLRERLVS-KPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDG 421 (1130)
Q Consensus 346 h~~~V~~v~fsp---dg~~llasg~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg 421 (1130)
....+..+.|+- +|...++-+-.+|.|.++.....+.... .++.. .+-......++.|++-+
T Consensus 68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~--------------~ki~~~~~lslD~~~~~ 133 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSS--------------KKISVVEALSLDISTSG 133 (339)
T ss_pred cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccch--------------hhhhheeeeEEEeeccC
Confidence 445666677763 3443456666778888887654332210 01100 00001124578899999
Q ss_pred CEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe--cCCCeeeE-ecCCCc
Q 001184 422 NFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQ-FEGHEA 498 (1130)
Q Consensus 422 ~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd--~~~~~~~~-~~~h~~ 498 (1130)
..++++..+|.+.+-+..... +.....+++|....+-+.|+..... ++.+||+|+.+..|| ..++.+.. .+-|..
T Consensus 134 ~~i~vs~s~G~~~~v~~t~~~-le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~ 211 (339)
T KOG0280|consen 134 TKIFVSDSRGSISGVYETEMV-LEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTS 211 (339)
T ss_pred ceEEEEcCCCcEEEEecceee-eeecccccccceeeeeeecccCCCc-eEEecCCCceEEEEEecCCcceeeecceeeec
Confidence 999999999999855544432 3344468899999999999987766 799999999999999 35566554 567999
Q ss_pred CEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCC
Q 001184 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGS 554 (1130)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 554 (1130)
.|.++.-++ +.+.++++|+.|-.|++||.++......-....+.|..+..+|.-.
T Consensus 212 GV~SI~ss~-~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~ 266 (339)
T KOG0280|consen 212 GVVSIYSSP-PKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIF 266 (339)
T ss_pred ceEEEecCC-CCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhh
Confidence 999997655 4568999999999999999997666655555567899999998543
No 281
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.97 E-value=5.4e-09 Score=114.62 Aligned_cols=283 Identities=13% Similarity=0.245 Sum_probs=186.8
Q ss_pred ccCCcccccccCCCC-CcccccCC-------cccceeeeccCCC--CEEEEEEecCCCe-EEEEEeCcCeEEEEeCCCCc
Q 001184 313 ASQSVDEATYPVPSQ-QATWSLDD-------LPRAVACTMHQGS--SVVSMDFHPFHHT-LLVVGCGDGEITLWDVGLRE 381 (1130)
Q Consensus 313 ~~~~~~~~~~s~~~~-~~~~~~~~-------~~~~~~~~~~h~~--~V~~v~fspdg~~-llasg~~dg~i~iwd~~~~~ 381 (1130)
..+.+.++.++|-|. ++..+..+ .|....+.++|-. .|-.+.|||.-.+ +-++......-.||++....
T Consensus 23 v~~~~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 23 VDGGFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred ecCcccceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 345677788888775 33333322 2555556666544 6778889875421 23334445567889886433
Q ss_pred eeecccceeeeccccccceeeeeecCCCccEEEEEEcCC-CCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEE
Q 001184 382 RLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD-GNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDL 460 (1130)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd-g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i 460 (1130)
-.. ..-++.||..+|+.+.|.|. ...||+++.|-.+..||+.+... .......-..+-..+
T Consensus 103 ~~a----------------Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~--p~ys~~~w~s~asqV 164 (1081)
T KOG0309|consen 103 SNA----------------IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR--PFYSTSSWRSAASQV 164 (1081)
T ss_pred ccc----------------eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc--ceeeeecccccCcee
Confidence 221 11157899999999999995 45899999999999999988643 233344444557789
Q ss_pred EEecCCCceEEEEEcCCCcEEEEe--cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeec
Q 001184 461 AFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD 538 (1130)
Q Consensus 461 ~~s~d~~~l~l~s~s~d~~v~iwd--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~ 538 (1130)
+|+--.. .+.+.+..+.|++|| ..+.++..+++|...|+.+.|..... ..+.+.+.||+|+.||.+.........
T Consensus 165 kwnyk~p--~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~-s~~~s~~~d~tvkfw~y~kSt~e~~~~ 241 (1081)
T KOG0309|consen 165 KWNYKDP--NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKY-SEIMSSSNDGTVKFWDYSKSTTESKRT 241 (1081)
T ss_pred eecccCc--chhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhh-hhhcccCCCCceeeeccccccccccee
Confidence 9987666 466667778899999 55678899999999999998865433 467899999999999998765554332
Q ss_pred -CCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeC---------CC-CceeEEEecccCceeEEEEE--------cCC
Q 001184 539 -APGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNE---------SE-GALKRTYIGFRKKSAGVVQF--------DTT 599 (1130)
Q Consensus 539 -~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~---------~~-~~~~~~~~~~~~~~v~~~~~--------~~~ 599 (1130)
....++..-.+.|-|.-...--. .++..+.+++. .+ .+.+..|.||.+ .|...-| .-+
T Consensus 242 vtt~~piw~~r~~Pfg~g~~~mp~--~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D-~V~eFlWR~r~e~~~d~d 318 (1081)
T KOG0309|consen 242 VTTNFPIWRGRYLPFGEGYCIMPM--VGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDD-VVLEFLWRKRKECDGDYD 318 (1081)
T ss_pred ccccCcceeccccccCceeEeccc--cCCeeeeeccccchhhhhccccCCcceeeecCcch-HHHHHhhhhcccccCCCC
Confidence 33446666677775543332211 12334444333 22 457889999877 3332222 222
Q ss_pred C--CEEEEEeCCCcEEEEeCCC
Q 001184 600 R--NRILAAGEDNQIKFWDMDN 619 (1130)
Q Consensus 600 ~--~~l~~~~~dg~i~vwd~~~ 619 (1130)
. -.|++-+.|..+++|-+.+
T Consensus 319 ~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 319 SRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred ccceeEEEeecCCceEeeeccH
Confidence 2 2699999999999998754
No 282
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.97 E-value=2.4e-09 Score=128.42 Aligned_cols=202 Identities=13% Similarity=0.217 Sum_probs=164.6
Q ss_pred ecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe
Q 001184 405 VKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD 484 (1130)
Q Consensus 405 ~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd 484 (1130)
++.|-..|.++.=+|-..+-++|+.||.|++|....+..+....+ .|. ..|+.+.|+.+|. .+..+..||.+.+|.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt-~g~-s~vtr~~f~~qGn--k~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRT-AGN-SRVTRSRFNHQGN--KFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeec-cCc-chhhhhhhcccCC--ceeeeccCCceeecc
Confidence 445667788888899889999999999999999998877654433 233 8899999999999 688888999999999
Q ss_pred cCCCeeeEecCCCcCEEEEeecccCCccEEEEEe---cCCcEEEEEccCCcc-eeeecCCCccEEEEEEecCCCeEEEee
Q 001184 485 LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTA---VDGKIKAWLYDNVGS-RVDYDAPGLWCTTMLYSADGSRLFSCG 560 (1130)
Q Consensus 485 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s---~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~ 560 (1130)
...+.....+.|......+.|-. ..+++++ .++.+.+||.-.... -.....|.+.++++++.|..+.|++||
T Consensus 2280 ~~pk~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisgg 2355 (2439)
T KOG1064|consen 2280 ASPKPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGG 2355 (2439)
T ss_pred cCCcceeccccCCccccceeeee----hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecC
Confidence 88888888888999888888754 3466653 568899999754333 234477888999999999999999999
Q ss_pred ecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEecc
Q 001184 561 TSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAE 629 (1130)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 629 (1130)
. +|.|++||++..++++.++. +. ...++++|+..|.++||++..-..+..+...
T Consensus 2356 r----~G~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e 2409 (2439)
T KOG1064|consen 2356 R----KGEVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSE 2409 (2439)
T ss_pred C----cCcEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccccchhhcCchh
Confidence 7 99999999999888877664 33 4578999999999999999988777766543
No 283
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.95 E-value=5.1e-09 Score=110.64 Aligned_cols=288 Identities=11% Similarity=0.121 Sum_probs=182.8
Q ss_pred ccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCC-ceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCC
Q 001184 344 MHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLR-ERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN 422 (1130)
Q Consensus 344 ~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~ 422 (1130)
.+|...|..++--.+.+. +++++.|.+|++|.+... ..+..... +-++..|+.+|..+.|-.|-+
T Consensus 732 ~GH~~~iRai~AidNENS-FiSASkDKTVKLWSik~EgD~~~tsaC-------------QfTY~aHkk~i~~igfL~~lr 797 (1034)
T KOG4190|consen 732 TGHQEKIRAIAAIDNENS-FISASKDKTVKLWSIKPEGDEIGTSAC-------------QFTYQAHKKPIHDIGFLADLR 797 (1034)
T ss_pred cCcHHHhHHHHhcccccc-eeeccCCceEEEEEeccccCcccccee-------------eeEhhhccCcccceeeeeccc
Confidence 469999999865555543 789999999999998642 22211111 115779999999999999999
Q ss_pred EEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecC-CCceEEEEEcCCCcEEEEe-cCCCeeeEec-----C
Q 001184 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYP-NKQLCIVTCGDDKLIRVWD-LSGRKLFQFE-----G 495 (1130)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d-~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~-----~ 495 (1130)
+++++ ||-|++||.--|..+.+...-. ..+.+..+...++ .+.++++.|+...+|+++| ..++....++ +
T Consensus 798 ~i~Sc--D~giHlWDPFigr~Laq~~dap-k~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~ 874 (1034)
T KOG4190|consen 798 SIASC--DGGIHLWDPFIGRLLAQMEDAP-KEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPG 874 (1034)
T ss_pred eeeec--cCcceeecccccchhHhhhcCc-ccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCC
Confidence 99876 7889999987776655432222 2334455555554 4444556668899999999 7777766654 3
Q ss_pred CCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEE-eeC
Q 001184 496 HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVE-WNE 574 (1130)
Q Consensus 496 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~-wd~ 574 (1130)
..+-+.++++.+ .|+.++.+-.+|+|.+.|.+++..+-.+.........++ .|..+.++.... +.++.+ |..
T Consensus 875 Pna~~R~iaVa~--~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~sal----dHslaVnWha 947 (1034)
T KOG4190|consen 875 PNALTRAIAVAD--KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSAL----DHSLAVNWHA 947 (1034)
T ss_pred CchheeEEEecc--CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcc----cceeEeeehh
Confidence 445678888754 457899999999999999998776554433322222222 234444554433 666766 876
Q ss_pred CCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCC----CceeEEEeccCCCCCcceEEEcCCCCEEEEE
Q 001184 575 SEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN----VNMLTSTEAEGGLPSLPRLRFNKEGNLLVVT 650 (1130)
Q Consensus 575 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~----~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~ 650 (1130)
..|........... + +-....-|..++++.....+.+|.-.. ...+..+....-.+..++++.-|-..-+..|
T Consensus 948 ldgimh~q~kpppe-p--ahflqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaG 1024 (1034)
T KOG4190|consen 948 LDGIMHLQDKPPPE-P--AHFLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAG 1024 (1034)
T ss_pred cCCeeeeccCCCCc-c--hhhhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhcc
Confidence 66655444332211 1 111222356677777777788874221 1222333333333356778887866666678
Q ss_pred eCCCcEEE
Q 001184 651 TADQGIKI 658 (1130)
Q Consensus 651 ~~dg~i~i 658 (1130)
...|.|.+
T Consensus 1025 ne~G~IaL 1032 (1034)
T KOG4190|consen 1025 NEHGAIAL 1032 (1034)
T ss_pred CCCCceee
Confidence 88888765
No 284
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.95 E-value=1.1e-07 Score=93.61 Aligned_cols=201 Identities=13% Similarity=0.131 Sum_probs=140.1
Q ss_pred eeEEEEecCCCEEEEEe-CCeEEEEECCCceeEE--EEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEee-cCeEEE
Q 001184 836 VPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMT--TFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVR-VDEVKT 911 (1130)
Q Consensus 836 i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~--~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~-~~~~~~ 911 (1130)
..++.|++.+.-++++. +|.+.+-+........ ..+.|.-++..+.|+..+..++.+|++|+.+..||++ .++.+.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 45778888888888876 7888866665554444 7889999999999998788899999999999999998 445554
Q ss_pred E-EecCCCCeeEEEEcc-CCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCc--EEEEEcCCc
Q 001184 912 K-LKGHQKHITGLAFST-NLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQV--RLLVNHETQ 987 (1130)
Q Consensus 912 ~-l~~h~~~V~~l~~s~-dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~--~l~~~~d~~ 987 (1130)
. -+.|...|.++.-+| ++.++++|+.|..|++||..+-.+ .+......++|..+..+|.-. .|+++--+.
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k------Pl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G 277 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK------PLFKAKVGGGVWRIKHHPEIFHRLLAACMHNG 277 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccC------ccccCccccceEEEEecchhhhHHHHHHHhcC
Confidence 4 567889999998886 467999999999999999985221 112222337899999998644 444454455
Q ss_pred EEEEECCCceee--eeeecCCCCCCCeEEEEECCCCCEEEEEe-CCCcEE-EEeCCCcc
Q 001184 988 LAIYDGSKMECI--RQWVPQDVLSSPISSAAYSCNSQLIYATF-TDGSIG-VFDADSLR 1042 (1130)
Q Consensus 988 i~v~d~~~~~~~--~~~~~~~~~~~~v~~v~~s~dg~~l~t~~-~Dg~i~-vwd~~~~~ 1042 (1130)
.+|.+...+..- ..+..+..|.+-++.-.|.....+|||++ .|+.++ +|-..+++
T Consensus 278 ~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 278 AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred ceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccCC
Confidence 666665543221 12233333355555555644445788866 577755 78655554
No 285
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.92 E-value=7.4e-07 Score=111.93 Aligned_cols=257 Identities=11% Similarity=0.134 Sum_probs=158.4
Q ss_pred EEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEe-C
Q 001184 351 VSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAF-T 429 (1130)
Q Consensus 351 ~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~-~ 429 (1130)
..+++++++..++++-+.++.|++||... ..+.... ............-..+-.....+++++++..|.++. .
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig-----~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~ 644 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIG-----STGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTE 644 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEc-----cCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCC
Confidence 46889986555778778889999999864 3332100 000000000000011223467899999988766654 4
Q ss_pred CCeEEEEEecCCccceeeee-------eecC-------CCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEecC
Q 001184 430 KHLIHLYTYQGSNDLCQSLE-------IDAH-------VGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEG 495 (1130)
Q Consensus 430 d~~i~vwd~~~~~~~~~~~~-------~~~h-------~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~~ 495 (1130)
++.|+++|..++. +..... ..+. -..-+.++|+|++.. ++++.+.++.|++||.....+..+.+
T Consensus 645 n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~-LyVad~~~~~I~v~d~~~g~v~~~~G 722 (1057)
T PLN02919 645 NHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEK-VYIAMAGQHQIWEYNISDGVTRVFSG 722 (1057)
T ss_pred CceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCe-EEEEECCCCeEEEEECCCCeEEEEec
Confidence 5789999987754 221100 0000 112468999995443 67788889999999944444444332
Q ss_pred C---------------CcCEEEEeecccCCcc-EEEEEecCCcEEEEEccCCcceeeec-------------CC------
Q 001184 496 H---------------EAPVYSVCPHQKENIH-FIFSTAVDGKIKAWLYDNVGSRVDYD-------------AP------ 540 (1130)
Q Consensus 496 h---------------~~~v~~~~~~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~-------------~~------ 540 (1130)
. -.....+++++ ++. ++++.+.+++|++||++++....... ..
T Consensus 723 ~G~~~~~~g~~~~~~~~~~P~GIavsp--dG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~ 800 (1057)
T PLN02919 723 DGYERNLNGSSGTSTSFAQPSGISLSP--DLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSE 800 (1057)
T ss_pred CCccccCCCCccccccccCccEEEEeC--CCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhh
Confidence 1 12234577754 444 55666778999999998654322110 00
Q ss_pred --CccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEeccc-------------CceeEEEEEcCCCCEEEE
Q 001184 541 --GLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFR-------------KKSAGVVQFDTTRNRILA 605 (1130)
Q Consensus 541 --~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~l~~ 605 (1130)
-.....++++++|+.+++... ++.|++||..++...... +.. -.....++++++|+.+++
T Consensus 801 ~~l~~P~Gvavd~dG~LYVADs~----N~rIrviD~~tg~v~tia-G~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVa 875 (1057)
T PLN02919 801 VLLQHPLGVLCAKDGQIYVADSY----NHKIKKLDPATKRVTTLA-GTGKAGFKDGKALKAQLSEPAGLALGENGRLFVA 875 (1057)
T ss_pred hhccCCceeeEeCCCcEEEEECC----CCEEEEEECCCCeEEEEe-ccCCcCCCCCcccccccCCceEEEEeCCCCEEEE
Confidence 012468899999987666653 889999999877654332 211 013556899999998888
Q ss_pred EeCCCcEEEEeCCCCce
Q 001184 606 AGEDNQIKFWDMDNVNM 622 (1130)
Q Consensus 606 ~~~dg~i~vwd~~~~~~ 622 (1130)
-+.++.|++||+.+++.
T Consensus 876 Dt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 876 DTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ECCCCEEEEEECCCCcc
Confidence 88999999999998765
No 286
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.90 E-value=4.2e-07 Score=103.24 Aligned_cols=259 Identities=12% Similarity=0.095 Sum_probs=158.7
Q ss_pred CCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEE-EEEcCCCCEEEEEeCCCeEEEE
Q 001184 358 FHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSR-VAWSPDGNFIGVAFTKHLIHLY 436 (1130)
Q Consensus 358 dg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-v~~spdg~~las~~~d~~i~vw 436 (1130)
++.. ++.++.+|.+..+|..+|+.+-...+ .+.+.+ ... .+..++.++.++.+..|
T Consensus 104 ~~~~-v~v~~~~g~l~ald~~tG~~~W~~~~--------------------~~~~~~~p~v--~~~~v~v~~~~g~l~a~ 160 (377)
T TIGR03300 104 DGGL-VFVGTEKGEVIALDAEDGKELWRAKL--------------------SSEVLSPPLV--ANGLVVVRTNDGRLTAL 160 (377)
T ss_pred cCCE-EEEEcCCCEEEEEECCCCcEeeeecc--------------------CceeecCCEE--ECCEEEEECCCCeEEEE
Confidence 3443 67788899999999999987642111 111111 111 34567777789999999
Q ss_pred EecCCccceeeeeeecCCCCe-----eEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCc-------CEEEE
Q 001184 437 TYQGSNDLCQSLEIDAHVGGV-----NDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEA-------PVYSV 503 (1130)
Q Consensus 437 d~~~~~~~~~~~~~~~h~~~V-----~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~-------~v~~~ 503 (1130)
|.++|+.+... ......+ ...... + . .++.+..++.+..+| .+|+.+........ ....+
T Consensus 161 d~~tG~~~W~~---~~~~~~~~~~~~~sp~~~-~-~--~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~ 233 (377)
T TIGR03300 161 DAATGERLWTY---SRVTPALTLRGSASPVIA-D-G--GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDV 233 (377)
T ss_pred EcCCCceeeEE---ccCCCceeecCCCCCEEE-C-C--EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhcc
Confidence 99998765422 1111111 111222 2 3 467788889999999 78887655431100 00011
Q ss_pred eecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEE
Q 001184 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTY 583 (1130)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 583 (1130)
.-.|.-.+..++.++.+|.+..||.++++......... .... ..++..++++.. ++.|+.+|..+++.+...
T Consensus 234 ~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~--~~~p--~~~~~~vyv~~~----~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 234 DGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS--YQGP--AVDDNRLYVTDA----DGVVVALDRRSGSELWKN 305 (377)
T ss_pred CCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC--ccCc--eEeCCEEEEECC----CCeEEEEECCCCcEEEcc
Confidence 11111123578888899999999999887766554221 1112 234566666653 899999999999877655
Q ss_pred ecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEE
Q 001184 584 IGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKIL 659 (1130)
Q Consensus 584 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw 659 (1130)
............. .++.+++++.+|.|+++|..+++.+..++.+... -.....+. +..|++++.||.|..+
T Consensus 306 ~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~-~~~sp~~~--~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 306 DELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSG-IASPPVVV--GDGLLVQTRDGDLYAF 376 (377)
T ss_pred ccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCc-cccCCEEE--CCEEEEEeCCceEEEe
Confidence 3222212222222 3678999999999999999999999888765421 11222222 3458889999998765
No 287
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.89 E-value=5.3e-07 Score=101.74 Aligned_cols=197 Identities=13% Similarity=-0.012 Sum_probs=120.6
Q ss_pred CCEEEEEEecCCCeEEEEEeC---cCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEE
Q 001184 348 SSVVSMDFHPFHHTLLVVGCG---DGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1130)
Q Consensus 348 ~~V~~v~fspdg~~llasg~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 424 (1130)
..+..-.|||||+++++..+. +..|.++|+.+|+... +....+.+...+|||||+.|
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~--------------------lt~~~g~~~~~~~SPDG~~l 247 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK--------------------IASSQGMLVVSDVSKDGSKL 247 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE--------------------EecCCCcEEeeEECCCCCEE
Confidence 377889999999863443332 3569999998887653 22344556678899999987
Q ss_pred EEEeC---CCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCC--cEEEEecCCCeeeEecCCCcC
Q 001184 425 GVAFT---KHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK--LIRVWDLSGRKLFQFEGHEAP 499 (1130)
Q Consensus 425 as~~~---d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~--~v~iwd~~~~~~~~~~~h~~~ 499 (1130)
+.... +..|.++|+.+++. ++ +..+.+......|+|||+.++ ++....+ .|.+.|..+.....+......
T Consensus 248 a~~~~~~g~~~Iy~~dl~~g~~-~~---LT~~~~~d~~p~~SPDG~~I~-F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~ 322 (419)
T PRK04043 248 LLTMAPKGQPDIYLYDTNTKTL-TQ---ITNYPGIDVNGNFVEDDKRIV-FVSDRLGYPNIFMKKLNSGSVEQVVFHGKN 322 (419)
T ss_pred EEEEccCCCcEEEEEECCCCcE-EE---cccCCCccCccEECCCCCEEE-EEECCCCCceEEEEECCCCCeEeCccCCCc
Confidence 76532 35688888877753 22 333443344568999999643 3333334 577777444444333322111
Q ss_pred EEEEeecccCCccEEEEEecC---------CcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEE
Q 001184 500 VYSVCPHQKENIHFIFSTAVD---------GKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLV 570 (1130)
Q Consensus 500 v~~~~~~~~~~~~~l~s~s~d---------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1130)
...|+ ++|+.|+..+.. ..|.+.|++.+.... +... .......|+|||+.++..... .+...+.
T Consensus 323 --~~~~S--PDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~~SPDG~~I~f~~~~-~~~~~L~ 395 (419)
T PRK04043 323 --NSSVS--TYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN-GVNQFPRFSSDGGSIMFIKYL-GNQSALG 395 (419)
T ss_pred --CceEC--CCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC-CCcCCeEECCCCCEEEEEEcc-CCcEEEE
Confidence 23554 556666655543 256777877665433 3322 223468899999999887643 3355677
Q ss_pred EeeCCC
Q 001184 571 EWNESE 576 (1130)
Q Consensus 571 ~wd~~~ 576 (1130)
+.++..
T Consensus 396 ~~~l~g 401 (419)
T PRK04043 396 IIRLNY 401 (419)
T ss_pred EEecCC
Confidence 777654
No 288
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.85 E-value=2.1e-06 Score=85.44 Aligned_cols=210 Identities=18% Similarity=0.188 Sum_probs=140.7
Q ss_pred EEEEecCCCEEEEEeCCeEEEEECCCc--eeEEEE---eCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEE
Q 001184 838 CVALSKNDSYVMSAGGGKVSLFNMMNF--KVMTTF---MSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTK 912 (1130)
Q Consensus 838 ~l~~s~dg~~la~~~dg~i~iwd~~~~--~~~~~~---~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~ 912 (1130)
.++.+.||++||+-.|..|.|=..++. .++... +.....-+.++||| |+.+||.+...|+|++||+....+. .
T Consensus 2 ~~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~lf-~ 79 (282)
T PF15492_consen 2 HLALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSELF-V 79 (282)
T ss_pred ceeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEecccceeE-E
Confidence 367889999999999999888766542 222222 23345578899999 9999999999999999999864432 3
Q ss_pred Eec-C------CCCeeEEEEccC------CCeEEEEeCCCcEEEEECCCC--cccceeeEeccCCCCCCCeEEEEEcCCC
Q 001184 913 LKG-H------QKHITGLAFSTN------LNILVSSGSDAQLIFWNTDTW--EKRKSIAIQLPAGKLPVGETRVQFHSDQ 977 (1130)
Q Consensus 913 l~~-h------~~~V~~l~~s~d------g~~L~s~s~Dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~v~~~~~s~d~ 977 (1130)
+.. + ...|.+|.|.+- ...|++...+|.++=|-+..+ +.-.....-....+.+.+|.++.++|..
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 321 1 245777777543 225677777888877766432 1111111122233455799999999999
Q ss_pred cEEEEEc-----C-------CcEEEEECCCceeeee--------------------------eecCCCCCCCeEEEEECC
Q 001184 978 VRLLVNH-----E-------TQLAIYDGSKMECIRQ--------------------------WVPQDVLSSPISSAAYSC 1019 (1130)
Q Consensus 978 ~~l~~~~-----d-------~~i~v~d~~~~~~~~~--------------------------~~~~~~~~~~v~~v~~s~ 1019 (1130)
++|+++. + -.+..|.+-++.+... +.........|..|..||
T Consensus 160 ~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSP 239 (282)
T PF15492_consen 160 RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSP 239 (282)
T ss_pred CEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECC
Confidence 9888741 1 1355665433221111 000111256899999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCcccccccCC
Q 001184 1020 NSQLIYATFTDGSIGVFDADSLRLRCRIAP 1049 (1130)
Q Consensus 1020 dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~ 1049 (1130)
||+.||+...+|.|.+|++.+.++......
T Consensus 240 dg~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 240 DGSLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred CCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence 999999999999999999999888776653
No 289
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.83 E-value=3.7e-08 Score=101.60 Aligned_cols=167 Identities=17% Similarity=0.124 Sum_probs=111.1
Q ss_pred CEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEe
Q 001184 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAF 428 (1130)
Q Consensus 349 ~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~ 428 (1130)
.+..+.++|.++ +||++..+....++++..... ..+.++.. ....-..+++.+..+......-..+
T Consensus 64 a~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~----~~kl~~~~---------~v~~~~~ai~~~~~~~sv~v~dkag 129 (390)
T KOG3914|consen 64 APALVLTSDSGR-LVAVATSSKQRAVFDYRENPK----GAKLLDVS---------CVPKRPTAISFIREDTSVLVADKAG 129 (390)
T ss_pred cccccccCCCce-EEEEEeCCCceEEEEEecCCC----cceeeeEe---------ecccCcceeeeeeccceEEEEeecC
Confidence 455667788887 688887777766777654332 11222111 1112223344444333333333344
Q ss_pred CCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEe-cCCCcCEEEEeec
Q 001184 429 TKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQF-EGHEAPVYSVCPH 506 (1130)
Q Consensus 429 ~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~-~~h~~~v~~~~~~ 506 (1130)
....+.+|....+.+. .+-||-..+++++|+||++ +++++..|..|+|-. ..-..+..| -||+.-|..++..
T Consensus 130 D~~~~di~s~~~~~~~----~~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~ 203 (390)
T KOG3914|consen 130 DVYSFDILSADSGRCE----PILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLT 203 (390)
T ss_pred CceeeeeecccccCcc----hhhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccHhheeeeeec
Confidence 5556666766654433 3568999999999999999 899999999999987 444444443 4899999999874
Q ss_pred ccCCccEEEEEecCCcEEEEEccCCcceeeec
Q 001184 507 QKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD 538 (1130)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~ 538 (1130)
+ +..|+++|.|+++++||+.++.....+.
T Consensus 204 ~---~~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 204 D---NYLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred c---CceeeecCCCCcEEEEecccCCcccccc
Confidence 3 3568999999999999999988775443
No 290
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.82 E-value=0.00084 Score=78.11 Aligned_cols=622 Identities=12% Similarity=0.103 Sum_probs=302.8
Q ss_pred EEEecCCCeEEEEEeCcCeEEEEeCC-CCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeCCC
Q 001184 353 MDFHPFHHTLLVVGCGDGEITLWDVG-LRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKH 431 (1130)
Q Consensus 353 v~fspdg~~llasg~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~ 431 (1130)
-..+++|.+ ...|..+|.+...-+. +++......+++ .+-+...-..|+..-++| .|.+|+.-|
T Consensus 263 ~~v~~~~~~-yLl~d~~G~Lf~l~l~~~~e~~s~~~lkv-------------e~lge~siassi~~L~ng-~lFvGS~~g 327 (1096)
T KOG1897|consen 263 GRVDLQGSR-YLLGDEDGMLFKLLLSHTGETVSGLDLKV-------------EYLGETSIASSINYLDNG-VLFVGSRFG 327 (1096)
T ss_pred ccccCCccE-EEEecCCCcEEEEEeecccccccceEEEE-------------EecCCcchhhhhhcccCc-eEEEeccCC
Confidence 345667775 5567788887766555 555443211111 123555566777777776 666777666
Q ss_pred eEEEEEecCCccc----eeeeeeecCCCCeeEEEEecCC---CceEEEEEc---CCCcEEEEe--cC--CCeeeEecCCC
Q 001184 432 LIHLYTYQGSNDL----CQSLEIDAHVGGVNDLAFSYPN---KQLCIVTCG---DDKLIRVWD--LS--GRKLFQFEGHE 497 (1130)
Q Consensus 432 ~i~vwd~~~~~~~----~~~~~~~~h~~~V~~i~~s~d~---~~l~l~s~s---~d~~v~iwd--~~--~~~~~~~~~h~ 497 (1130)
.=.+-.+.+.... ....++ ..-++|.+++.-... +. -++||+ .||++|+.. .. .-....+.| -
T Consensus 328 dSqLi~L~~e~d~gsy~~ilet~-~NLgPI~Dm~Vvd~d~q~q~-qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-i 404 (1096)
T KOG1897|consen 328 DSQLIKLNTEPDVGSYVVILETF-VNLGPIVDMCVVDLDRQGQG-QIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-I 404 (1096)
T ss_pred ceeeEEccccCCCCchhhhhhhc-ccccceeeEEEEeccccCCc-eEEEEeCCCCCCcEEEEecccccceeeEeecCC-c
Confidence 5455555442221 000111 234578888776533 22 456654 589999987 22 222334445 3
Q ss_pred cCEEEEe--ecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEec-CCCeEEEeeecCCCCcEEEEeeC
Q 001184 498 APVYSVC--PHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSA-DGSRLFSCGTSKEGDSHLVEWNE 574 (1130)
Q Consensus 498 ~~v~~~~--~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~ 574 (1130)
..++.+. +.++.+. +|+.+--+.+ ++..+...-......+-......+..+. .|+.|+-.. ...|++++-
T Consensus 405 kg~w~lk~~v~~~~d~-ylvlsf~~eT-rvl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvT-----s~~iRl~ss 477 (1096)
T KOG1897|consen 405 KGMWSLKSMVDENYDN-YLVLSFISET-RVLNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQVT-----SNSIRLVSS 477 (1096)
T ss_pred cceeEeeccccccCCc-EEEEEeccce-EEEEEccceEEeccccccccCceEEEEccCCceEEEEe-----cccEEEEcc
Confidence 4566666 5555554 4433322222 2333322211111111111122222221 333333332 446777774
Q ss_pred CCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCC--C----CEEE
Q 001184 575 SEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKE--G----NLLV 648 (1130)
Q Consensus 575 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~--~----~~l~ 648 (1130)
. .....+.... .+++...+.+...++.++.++.+...++..+. +.....+.-...|.|+.++|- + ++++
T Consensus 478 ~--~~~~~W~~p~--~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~~a 552 (1096)
T KOG1897|consen 478 A--GLRSEWRPPG--KITIGVVSANASQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSRLLA 552 (1096)
T ss_pred h--hhhhcccCCC--ceEEEEEeecceEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcceEEE
Confidence 4 2223333222 23333444455577777777777777776665 333333333346889999873 2 3788
Q ss_pred EEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCC
Q 001184 649 VTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGI 728 (1130)
Q Consensus 649 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (1130)
+|..+..+.+.-...........+... ..-|. +-++ .....+
T Consensus 553 VG~Ws~~~~~l~~~pd~~~~~~~~l~~-------------------~~iPR---------------SIl~----~~~e~d 594 (1096)
T KOG1897|consen 553 VGLWSDISMILTFLPDLILITHEQLSG-------------------EIIPR---------------SILL----TTFEGD 594 (1096)
T ss_pred EEeecceEEEEEECCCcceeeeeccCC-------------------Cccch---------------heee----EEeecc
Confidence 887766655543322211111100000 00010 0011 011123
Q ss_pred CCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccc
Q 001184 729 EKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKAT 808 (1130)
Q Consensus 729 ~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 808 (1130)
..++.++..||.+..|.++...-...... ...-...++.--.|+..++.-+.+.+|.=..+|..
T Consensus 595 ~~yLlvalgdG~l~~fv~d~~tg~lsd~K----k~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~------------ 658 (1096)
T KOG1897|consen 595 IHYLLVALGDGALLYFVLDINTGQLSDRK----KVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSS------------ 658 (1096)
T ss_pred ceEEEEEcCCceEEEEEEEcccceEcccc----ccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEec------------
Confidence 56677777788877776654221000000 00012233344445544444444444433333321
Q ss_pred cccccccccCCCCcceeccCCCCCCCceeE-EEEe--cCCCEEEEEeCCeEEEEECCCcee--EEEEeCCCCCeEEEEEe
Q 001184 809 AAVAPQHWQPSNGLLMTNDVPENAEDVVPC-VALS--KNDSYVMSAGGGKVSLFNMMNFKV--MTTFMSPPPASTFLAFH 883 (1130)
Q Consensus 809 ~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~-l~~s--~dg~~la~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~l~~s 883 (1130)
++++....+. -..+.. +.|+ .-...++++..+.+++.-+..-+. +++... ......+++.
T Consensus 659 -----------n~kLv~spls---~kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvpl-~~~prrI~~q 723 (1096)
T KOG1897|consen 659 -----------NGKLVYSPLS---LKEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVPL-GESPRRICYQ 723 (1096)
T ss_pred -----------CCcEEEeccc---hHHhhhhcccccccCCceEEEecCCceEEEEecchhhcceeeecC-CCChhheEec
Confidence 1122211110 011111 1122 223466777777777776554322 233322 2335556666
Q ss_pred CCCCcEEEEEeCC-----------C---cEEEEEeecCeEEEEEec----CCCCeeEEEEccC-CCeEEEEeC-------
Q 001184 884 PQDNNIIAIGMED-----------S---TIQIYNVRVDEVKTKLKG----HQKHITGLAFSTN-LNILVSSGS------- 937 (1130)
Q Consensus 884 p~~~~~lasg~~d-----------g---~v~iwd~~~~~~~~~l~~----h~~~V~~l~~s~d-g~~L~s~s~------- 937 (1130)
+ ...++++.+.- . .++++|-++-+.+...+- -...|.+..|..| +.++++|..
T Consensus 724 ~-~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ 802 (1096)
T KOG1897|consen 724 E-SSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDEN 802 (1096)
T ss_pred c-cceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCC
Confidence 5 34444433321 1 255666555444332211 0123455568877 677777764
Q ss_pred ---CCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCceeeeeeecCCCCCCCeEE
Q 001184 938 ---DAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISS 1014 (1130)
Q Consensus 938 ---Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~ 1014 (1130)
.|.|.++............-.. ......+.-.-...++++-+..+++|++.+.+.++.- ..+..++..
T Consensus 803 ep~~GRIivfe~~e~~~L~~v~e~~------v~Gav~aL~~fngkllA~In~~vrLye~t~~~eLr~e---~~~~~~~~a 873 (1096)
T KOG1897|consen 803 EPVNGRIIVFEFEELNSLELVAETV------VKGAVYALVEFNGKLLAGINQSVRLYEWTTERELRIE---CNISNPIIA 873 (1096)
T ss_pred CcccceEEEEEEecCCceeeeeeee------eccceeehhhhCCeEEEecCcEEEEEEccccceehhh---hcccCCeEE
Confidence 4778888877622211111100 1112233333344566677789999999988554443 334678999
Q ss_pred EEECCCCCEEEEEeCCCcEEEEeCC--CcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeC
Q 001184 1015 AAYSCNSQLIYATFTDGSIGVFDAD--SLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEP 1092 (1130)
Q Consensus 1015 v~~s~dg~~l~t~~~Dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~ 1092 (1130)
+...-.|..+++|..=+++.+-... .|.+....+ .+ ++ .+.+++..- +.+.++-+..+|.+++-..
T Consensus 874 L~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evAr--D~------~p--~Wmtaveil--~~d~ylgae~~gNlf~v~~ 941 (1096)
T KOG1897|consen 874 LDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVAR--DY------NP--NWMTAVEIL--DDDTYLGAENSGNLFTVRK 941 (1096)
T ss_pred EEEEecCcEEEEeeccceEEEEEEeccCCceEEeeh--hh------Cc--cceeeEEEe--cCceEEeecccccEEEEEe
Confidence 9999999999999977776665444 433432222 22 22 223333332 3456777788999988877
Q ss_pred CCC
Q 001184 1093 SET 1095 (1130)
Q Consensus 1093 ~~~ 1095 (1130)
.+.
T Consensus 942 d~~ 944 (1096)
T KOG1897|consen 942 DSD 944 (1096)
T ss_pred cCC
Confidence 643
No 291
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.81 E-value=1.8e-06 Score=91.23 Aligned_cols=226 Identities=15% Similarity=0.162 Sum_probs=140.9
Q ss_pred CCeEEEEECCCceeEEEEeCCC--CCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCC
Q 001184 853 GGKVSLFNMMNFKVMTTFMSPP--PASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLN 930 (1130)
Q Consensus 853 dg~i~iwd~~~~~~~~~~~~~~--~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~ 930 (1130)
+|+|..||..+++.+....... ....+.. .+ ++..+++++.++.|+.||..+|+.+-++.. .+.+.... ..++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~-~~-~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATA-VP-DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETE-EE-ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceE-EE-eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccc
Confidence 5889999999999998886421 2222222 32 344566678999999999999999877765 23222212 23456
Q ss_pred eEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEE-EcCCcEEEEECCCceeeeeeecCCCCC
Q 001184 931 ILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV-NHETQLAIYDGSKMECIRQWVPQDVLS 1009 (1130)
Q Consensus 931 ~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~ 1009 (1130)
.++.++.|+.++.+|..+++..-......... . ..........++..+++ ..++.+..+|+++|+.+..........
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPP-A-GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRG 155 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCT-C-STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-S
T ss_pred ccccccceeeeEecccCCcceeeeeccccccc-c-ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCC
Confidence 77777788899999999988654421111111 1 11122222223555555 559999999999999988876643111
Q ss_pred -CC------eEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEe
Q 001184 1010 -SP------ISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGL 1082 (1130)
Q Consensus 1010 -~~------v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 1082 (1130)
.. +.+-....++ .++.++.++.+..+|+.+++.+-... .. . ... .... .+..|+.++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~~---------~-~~~---~~~~-~~~~l~~~~ 219 (238)
T PF13360_consen 156 SSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-IS---------G-IYS---LPSV-DGGTLYVTS 219 (238)
T ss_dssp S--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-SS-----------ECE---CEEC-CCTEEEEEE
T ss_pred CcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-CC---------C-ccC---Ccee-eCCEEEEEe
Confidence 11 2233333355 67777777754444999999553222 11 1 111 1123 456777777
Q ss_pred CCCcEEEEeCCCCccCCc
Q 001184 1083 TDGSVKVIEPSETERKWG 1100 (1130)
Q Consensus 1083 ~Dg~v~vW~~~~~~~~w~ 1100 (1130)
.++.|..||+.+++.+|.
T Consensus 220 ~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 220 SDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp TTTEEEEEETTTTEEEEE
T ss_pred CCCEEEEEECCCCCEEeE
Confidence 999999999999999995
No 292
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.80 E-value=3.2e-06 Score=87.27 Aligned_cols=187 Identities=11% Similarity=0.136 Sum_probs=130.1
Q ss_pred EEEEecCCCEEEEEe------CCeEEEEECC-CceeEEEEeCCCCCeEEEEEeCCCCcEEEEEe----------------
Q 001184 838 CVALSKNDSYVMSAG------GGKVSLFNMM-NFKVMTTFMSPPPASTFLAFHPQDNNIIAIGM---------------- 894 (1130)
Q Consensus 838 ~l~~s~dg~~la~~~------dg~i~iwd~~-~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~---------------- 894 (1130)
.-+||+||++|.+.. .|.|-|||.. +.+.+.++..+.-.-..+.+.| |++.|+++.
T Consensus 55 Hg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl 133 (305)
T PF07433_consen 55 HGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNL 133 (305)
T ss_pred CEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecCh
Confidence 468999999999874 3779999998 7888899988887788899999 776666652
Q ss_pred --CCCcEEEEEeecCeEEEE--E--ecCCCCeeEEEEccCCCeEEEEeCCC-------cEEEEECCCCcccceeeEec-c
Q 001184 895 --EDSTIQIYNVRVDEVKTK--L--KGHQKHITGLAFSTNLNILVSSGSDA-------QLIFWNTDTWEKRKSIAIQL-P 960 (1130)
Q Consensus 895 --~dg~v~iwd~~~~~~~~~--l--~~h~~~V~~l~~s~dg~~L~s~s~Dg-------~i~vwd~~~~~~~~~~~~~~-~ 960 (1130)
.+-++...|..+|+++.+ + .-|...|..|++.++|..++..-..| .|.+++... ......... .
T Consensus 134 ~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~ 211 (305)
T PF07433_consen 134 DTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQ 211 (305)
T ss_pred hhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHH
Confidence 123466667788988877 4 33788899999999987666543332 133343332 111110000 0
Q ss_pred CCCCCCCeEEEEEcCCCcEEEEE--cCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEE
Q 001184 961 AGKLPVGETRVQFHSDQVRLLVN--HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIG 1034 (1130)
Q Consensus 961 ~~~~~~~v~~~~~s~d~~~l~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~ 1034 (1130)
.......+-+|++++++.+++++ ..+.+.+||..++..+...... .+..++-.+++ ++++.+ .|.+.
T Consensus 212 ~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~-----D~cGva~~~~~-f~~ssG-~G~~~ 280 (305)
T PF07433_consen 212 WRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP-----DACGVAPTDDG-FLVSSG-QGQLI 280 (305)
T ss_pred HHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC-----ceeeeeecCCc-eEEeCC-CccEE
Confidence 01122678999999999988875 4788999999999998876654 56677777666 666655 45433
No 293
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.80 E-value=4.1e-09 Score=117.60 Aligned_cols=217 Identities=16% Similarity=0.229 Sum_probs=160.2
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCC-cEEE
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK-LIRV 482 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~-~v~i 482 (1130)
+++.|....+|++||-+.++|+.|+..|.|++|++.+|.... ...+|..+|+-+.=+.||.. .|.+++... ...+
T Consensus 1096 ~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~---s~ncH~SavT~vePs~dgs~-~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE---SVNCHQSAVTLVEPSVDGST-QLTSSSSSSPLSAL 1171 (1516)
T ss_pred hhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc---cccccccccccccccCCcce-eeeeccccCchHHH
Confidence 477899999999999999999999999999999999998765 56899999999999999984 233333333 6789
Q ss_pred Ee--cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecC----CCccEEEEEEecCCCeE
Q 001184 483 WD--LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA----PGLWCTTMLYSADGSRL 556 (1130)
Q Consensus 483 wd--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l 556 (1130)
|+ ..+...++|.+. .++.|+.+. ..-+.|+.-....+||+.+.....++-. ....-+...|+|+..++
T Consensus 1172 W~~~s~~~~~Hsf~ed----~~vkFsn~~--q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LI 1245 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDED----KAVKFSNSL--QFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLI 1245 (1516)
T ss_pred hccccccCcccccccc----ceeehhhhH--HHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceE
Confidence 99 566677766642 345554432 3334455556778999999877665322 12234678899999988
Q ss_pred EEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcc
Q 001184 557 FSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLP 636 (1130)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~ 636 (1130)
+--| .+||.+..+.++.|..... ...-.|+|.|..++.-++ |||+++.+.++....-. -.
T Consensus 1246 lndG---------vLWDvR~~~aIh~FD~ft~--~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ld----qc 1305 (1516)
T KOG1832|consen 1246 LNDG---------VLWDVRIPEAIHRFDQFTD--YGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLD----QC 1305 (1516)
T ss_pred eeCc---------eeeeeccHHHHhhhhhhee--cccccccCCCceEEeech-----hhhhHHHHHHhcCcccc----ce
Confidence 7643 5799998888888775442 333569999999999887 99999998887665432 26
Q ss_pred eEEEcCCCCEEEEE
Q 001184 637 RLRFNKEGNLLVVT 650 (1130)
Q Consensus 637 ~v~~s~~~~~l~~~ 650 (1130)
.+.|+..|..++..
T Consensus 1306 ~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1306 AVTFNSTGDVMYAM 1319 (1516)
T ss_pred EEEeccCccchhhh
Confidence 77888888766543
No 294
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.78 E-value=5.1e-06 Score=85.78 Aligned_cols=209 Identities=17% Similarity=0.204 Sum_probs=146.1
Q ss_pred ceeEEEEec-CCCEEEEEe-CCe-EEEEECCCceeEEEEeCCCCCe--EEEEEeCCCCcEEEEEeC-----CCcEEEEEe
Q 001184 835 VVPCVALSK-NDSYVMSAG-GGK-VSLFNMMNFKVMTTFMSPPPAS--TFLAFHPQDNNIIAIGME-----DSTIQIYNV 904 (1130)
Q Consensus 835 ~i~~l~~s~-dg~~la~~~-dg~-i~iwd~~~~~~~~~~~~~~~~i--~~l~~sp~~~~~lasg~~-----dg~v~iwd~ 904 (1130)
....++.+| ++..++.+- -|+ ..+||..+++....+....+.- -.-+||+ ||++|++.-. .|.|-|||.
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEEC
Confidence 345678888 455556665 354 8999999999998887554442 2578999 8888877643 478999999
Q ss_pred e-cCeEEEEEecCCCCeeEEEEccCCCeEEEEeC------------------CCcEEEEECCCCcccceeeEeccCCCCC
Q 001184 905 R-VDEVKTKLKGHQKHITGLAFSTNLNILVSSGS------------------DAQLIFWNTDTWEKRKSIAIQLPAGKLP 965 (1130)
Q Consensus 905 ~-~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~------------------Dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 965 (1130)
. +.+.+.++..|--.-..+.+.|||+.|+.+-. +-++.+-|..+++.... ..++...+.
T Consensus 85 ~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q--~~Lp~~~~~ 162 (305)
T PF07433_consen 85 ARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQ--VELPPDLHQ 162 (305)
T ss_pred cCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeee--eecCccccc
Confidence 9 67888889888777778999999988887642 23455566666654333 223333444
Q ss_pred CCeEEEEEcCCCcEEEEEc-C-----Cc--EEEEECCCceeeeeeecC----CCCCCCeEEEEECCCCCEEEEEe-CCCc
Q 001184 966 VGETRVQFHSDQVRLLVNH-E-----TQ--LAIYDGSKMECIRQWVPQ----DVLSSPISSAAYSCNSQLIYATF-TDGS 1032 (1130)
Q Consensus 966 ~~v~~~~~s~d~~~l~~~~-d-----~~--i~v~d~~~~~~~~~~~~~----~~~~~~v~~v~~s~dg~~l~t~~-~Dg~ 1032 (1130)
..+..+++.++|..++... . .. +.+++. ++.+..+... .....-+-+|+++++|.++++++ .-+.
T Consensus 163 lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~ 240 (305)
T PF07433_consen 163 LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGR 240 (305)
T ss_pred cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCE
Confidence 7899999999999888731 1 11 333433 3323333221 12256899999999999887766 6789
Q ss_pred EEEEeCCCcccccccC
Q 001184 1033 IGVFDADSLRLRCRIA 1048 (1130)
Q Consensus 1033 i~vwd~~~~~~~~~~~ 1048 (1130)
+.+||..+++++....
T Consensus 241 ~~~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 241 VAVWDAATGRLLGSVP 256 (305)
T ss_pred EEEEECCCCCEeeccc
Confidence 9999999999887765
No 295
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.77 E-value=8.1e-06 Score=81.40 Aligned_cols=231 Identities=12% Similarity=0.147 Sum_probs=135.4
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEecCCc--cceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeE
Q 001184 415 VAWSPDGNFIGVAFTKHLIHLYTYQGSN--DLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQ 492 (1130)
Q Consensus 415 v~~spdg~~las~~~d~~i~vwd~~~~~--~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~ 492 (1130)
++.++||+.||+. .|..|.|-..+..= .+.....-+.....=+.++||||+. +||.+...|+|+++|..|..+..
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~t--lLa~a~S~G~i~vfdl~g~~lf~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCT--LLAYAESTGTIRVFDLMGSELFV 79 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCc--EEEEEcCCCeEEEEecccceeEE
Confidence 5678999999987 45566665554321 1111111122223457899999999 89999999999999977777766
Q ss_pred ecCC-------CcCEEEEeecccCC----ccEEEEEecCCcEEEEEccCC-----cceeeecC---CCccEEEEEEecCC
Q 001184 493 FEGH-------EAPVYSVCPHQKEN----IHFIFSTAVDGKIKAWLYDNV-----GSRVDYDA---PGLWCTTMLYSADG 553 (1130)
Q Consensus 493 ~~~h-------~~~v~~~~~~~~~~----~~~l~s~s~dg~i~vwd~~~~-----~~~~~~~~---~~~~v~~~~~s~~~ 553 (1130)
+... ...|..+.|..... ...|+.-..+|.++-|-+..+ .....+.. ....|.++.++|..
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 6532 24556666643221 235677778888888876432 11222222 34589999999999
Q ss_pred CeEEEeeecCCCCcE-------EEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEE
Q 001184 554 SRLFSCGTSKEGDSH-------LVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTST 626 (1130)
Q Consensus 554 ~~l~~~~~~~~~~~~-------i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 626 (1130)
++|+++|.....++. +..|.+-++.+ ......+.+.+.-.... +..+|.+-+.+.....
T Consensus 160 ~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~P-----------yyk~v~~~~~~~~~~~~---~~~~~~~~~~~~fs~~ 225 (282)
T PF15492_consen 160 RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSP-----------YYKQVTSSEDDITASSK---RRGLLRIPSFKFFSRQ 225 (282)
T ss_pred CEEEEeccCCCCCccccccccCceEEEEcCCCC-----------cEEEccccCcccccccc---ccceeeccceeeeecc
Confidence 999998864332211 22222211111 11111111111111111 1223443332222211
Q ss_pred eccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 627 EAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 627 ~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
......|..+..||||..||+...+|.|.+|++..-
T Consensus 226 --~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 226 --GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred --ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 122347899999999999999999999999999765
No 296
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.76 E-value=8.9e-06 Score=92.65 Aligned_cols=308 Identities=9% Similarity=0.043 Sum_probs=168.5
Q ss_pred cEEEEEecCCcEEEEEccCCcceeeecCCCc----------cEE-EEEEecCCCeEEEeeecCCCCcEEEEeeCCCCcee
Q 001184 512 HFIFSTAVDGKIKAWLYDNVGSRVDYDAPGL----------WCT-TMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALK 580 (1130)
Q Consensus 512 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~----------~v~-~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1130)
..++.++.+|.+.-+|.++++.......... .+. .+.. ++..++.++. ++.++.+|.++|+.+
T Consensus 70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~----~g~l~ald~~tG~~~ 143 (394)
T PRK11138 70 NKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSE----KGQVYALNAEDGEVA 143 (394)
T ss_pred CEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcC----CCEEEEEECCCCCCc
Confidence 3566666677777777777766665443221 000 0111 3445555543 789999999999988
Q ss_pred EEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCC---cceEEEcCCCCEEEEEeCCCcEE
Q 001184 581 RTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPS---LPRLRFNKEGNLLVVTTADQGIK 657 (1130)
Q Consensus 581 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~---i~~v~~s~~~~~l~~~~~dg~i~ 657 (1130)
........ ......+ .+..++.+..++.++.+|..+|+.+........... ...... .+..++.++.+|.+.
T Consensus 144 W~~~~~~~-~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~ 218 (394)
T PRK11138 144 WQTKVAGE-ALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVS 218 (394)
T ss_pred ccccCCCc-eecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEE
Confidence 77654321 1111112 245777888899999999999998877764321000 011111 133577788889998
Q ss_pred EEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCccccccc
Q 001184 658 ILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDI 737 (1130)
Q Consensus 658 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (1130)
.++..++....+.-.. .|. + ..
T Consensus 219 a~d~~~G~~~W~~~~~-----------------------~~~-----------------------------~------~~ 240 (394)
T PRK11138 219 AVLMEQGQLIWQQRIS-----------------------QPT-----------------------------G------AT 240 (394)
T ss_pred EEEccCChhhheeccc-----------------------cCC-----------------------------C------cc
Confidence 8898887433221000 000 0 00
Q ss_pred CCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCccccccccccccc
Q 001184 738 SDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQ 817 (1130)
Q Consensus 738 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~ 817 (1130)
..-++++. .... .+ .+..+++++.+|.+..+|...+. .+|.
T Consensus 241 -~~~~~~~~-------------------~~sP----~v--~~~~vy~~~~~g~l~ald~~tG~-------------~~W~ 281 (394)
T PRK11138 241 -EIDRLVDV-------------------DTTP----VV--VGGVVYALAYNGNLVALDLRSGQ-------------IVWK 281 (394)
T ss_pred -chhccccc-------------------CCCc----EE--ECCEEEEEEcCCeEEEEECCCCC-------------EEEe
Confidence 00000000 0000 00 13445566666776665543321 1233
Q ss_pred CCCCcceeccCCCCCCCceeEEEEecCCCEEEEEeCCeEEEEECCCceeEEEEeCC-CCCeEEEEEeCCCCcEEEEEeCC
Q 001184 818 PSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSP-PPASTFLAFHPQDNNIIAIGMED 896 (1130)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~-~~~i~~l~~sp~~~~~lasg~~d 896 (1130)
...+ ....+.. .++..++...+|.+..+|..+++.+-..... .....+..+. + ..|++++.+
T Consensus 282 ~~~~-------------~~~~~~~-~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~--~-g~l~v~~~~ 344 (394)
T PRK11138 282 REYG-------------SVNDFAV-DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY--N-GYLVVGDSE 344 (394)
T ss_pred ecCC-------------CccCcEE-ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE--C-CEEEEEeCC
Confidence 2111 0111222 2344444444899999999999876544321 1122333332 3 356788999
Q ss_pred CcEEEEEeecCeEEEEEecCCCCeeE-EEEccCCCeEEEEeCCCcEEEEEC
Q 001184 897 STIQIYNVRVDEVKTKLKGHQKHITG-LAFSTNLNILVSSGSDAQLIFWNT 946 (1130)
Q Consensus 897 g~v~iwd~~~~~~~~~l~~h~~~V~~-l~~s~dg~~L~s~s~Dg~i~vwd~ 946 (1130)
|.|++.|..+|+.+.+.+-....+.+ ..+ .+..|+.++.||.|+.+++
T Consensus 345 G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 345 GYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 99999999999988877644333332 222 2458888999999887754
No 297
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.75 E-value=2.9e-06 Score=82.63 Aligned_cols=227 Identities=13% Similarity=0.017 Sum_probs=144.3
Q ss_pred EEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCC-CEEEEEeCCCeEEEEEecC
Q 001184 362 LLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDG-NFIGVAFTKHLIHLYTYQG 440 (1130)
Q Consensus 362 llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~las~~~d~~i~vwd~~~ 440 (1130)
+||.|+..|...+|...+.+.... ....|...|+-+.=.-|. -.+..++.|.++++.+++.
T Consensus 86 ~la~gG~~g~fd~~~~~tn~~h~~------------------~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~ 147 (344)
T KOG4532|consen 86 TLADGGASGQFDLFACNTNDGHLY------------------QCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSG 147 (344)
T ss_pred EEEeccccceeeeecccCccccee------------------eecccccchhhhhhhcccccceeeccCCcceeEEEEec
Confidence 489999999999999987654321 122333323222111122 2466678899999999987
Q ss_pred CccceeeeeeecCCC--CeeEEEEecCCCceEEEEEcCCCcEEEEe--cCCCeeeE--ecCCCcCEEEEeecccCCccEE
Q 001184 441 SNDLCQSLEIDAHVG--GVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQ--FEGHEAPVYSVCPHQKENIHFI 514 (1130)
Q Consensus 441 ~~~~~~~~~~~~h~~--~V~~i~~s~d~~~l~l~s~s~d~~v~iwd--~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~l 514 (1130)
+.... .-|.. .+.++++++|++ ++++.+....|..|. .+++.+.. ....+..-.+..| +.+...+
T Consensus 148 ~s~~~-----~~h~~~~~~ns~~~snd~~--~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~--s~~~~~F 218 (344)
T KOG4532|consen 148 DSNKF-----AVHNQNLTQNSLHYSNDPS--WGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSF--SENDLQF 218 (344)
T ss_pred Ccccc-----eeeccccceeeeEEcCCCc--eEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeee--ccCcceE
Confidence 65322 23433 388999999999 889999999999988 44444433 2233333445555 4455789
Q ss_pred EEEecCCcEEEEEccCCccee-----eecCCCccEEEEEEecCCCe-EEEeeecCCCCcEEEEeeCCCCceeEEEecccC
Q 001184 515 FSTAVDGKIKAWLYDNVGSRV-----DYDAPGLWCTTMLYSADGSR-LFSCGTSKEGDSHLVEWNESEGALKRTYIGFRK 588 (1130)
Q Consensus 515 ~s~s~dg~i~vwd~~~~~~~~-----~~~~~~~~v~~~~~s~~~~~-l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~ 588 (1130)
+++..||++.|||++...... ....|.+.+..+.|++.|.. |+.-+ ..-+.+.+.|++++...+.+....+
T Consensus 219 Av~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~s---Ehfs~~hv~D~R~~~~~q~I~i~~d 295 (344)
T KOG4532|consen 219 AVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFIS---EHFSRVHVVDTRNYVNHQVIVIPDD 295 (344)
T ss_pred EEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEe---cCcceEEEEEcccCceeeEEecCcc
Confidence 999999999999998866544 34457778999999986643 22222 2367899999998876555443222
Q ss_pred -------ceeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001184 589 -------KSAGVVQFDTTRNRILAAGEDNQIKFWDMDN 619 (1130)
Q Consensus 589 -------~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 619 (1130)
..+...+|+.++..+.+..++ .+.-|++..
T Consensus 296 ~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 296 VERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILS 332 (344)
T ss_pred ccccccccccccccccCCCcccccccch-hhheeeccc
Confidence 124455566665555554443 233444443
No 298
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.72 E-value=2.8e-07 Score=89.17 Aligned_cols=208 Identities=15% Similarity=0.209 Sum_probs=129.8
Q ss_pred CEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEe
Q 001184 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAF 428 (1130)
Q Consensus 349 ~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~ 428 (1130)
.|+.+.|+-+- .|+++..++.+......++.++. .|+-..... +.+++..|.+.-.+-+.+--+..+++++
T Consensus 38 ~~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~-----~~~rt~~i~--~~~~~a~~sep~p~~~~s~~~t~V~~~~ 108 (319)
T KOG4714|consen 38 KLSKVSLSAEY--ILFTGETSSQIISLGKGRGRCIS-----LWERDDGID--PFKVLAKNSEIDPNDACTMTDNRVCIGY 108 (319)
T ss_pred EEEEeechhhh--eeecccchhheeeeccceEEEec-----hhhcccCcC--ceeeeeccCCCCCcccccccCCceEecC
Confidence 37777777764 58888888888887776665543 222222111 1223445555545555555678899999
Q ss_pred CCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCC------cEEEEec--CCCeeeEecCCCcCE
Q 001184 429 TKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK------LIRVWDL--SGRKLFQFEGHEAPV 500 (1130)
Q Consensus 429 ~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~------~v~iwd~--~~~~~~~~~~h~~~v 500 (1130)
.||.+.+.+.+.- ++....+..-...-.+.++...+. .+.++ .=| ..+.|+. .+..+.... ....|
T Consensus 109 ~dg~~~v~s~~~~--~~~~~~i~~~~~~~as~~~~~~~~--~i~s~-~~g~~n~~d~~~a~~~~p~~t~~~~~~-~~~~v 182 (319)
T KOG4714|consen 109 ADGSLAVFSTDKD--LALMSRIPSIHSGSASRKICRHGN--SILSG-GCGNWNAQDNFYANTLDPIKTLIPSKK-ALDAV 182 (319)
T ss_pred CCceEEEEechHH--Hhhhhhcccccccccccceeeccc--EEecC-CcceEeeccceeeeccccccccccccc-ccccc
Confidence 9999999998762 221111221111222333444454 33333 222 2344441 111111111 22348
Q ss_pred EEEeecccCCccEEEEEecCCcEEEEEccCCccee-eecCCCccEEEEEEec-CCCeEEEeeecCCCCcEEEEeeCCC
Q 001184 501 YSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV-DYDAPGLWCTTMLYSA-DGSRLFSCGTSKEGDSHLVEWNESE 576 (1130)
Q Consensus 501 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1130)
.++|-+|... +++++|+.||.+-+||.++..... .+..|..++..+-|.| ++..|++++. +|.+..||..+
T Consensus 183 ~~l~~hp~qq-~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~se----dGslw~wdas~ 255 (319)
T KOG4714|consen 183 TALCSHPAQQ-HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSE----DGSLWHWDAST 255 (319)
T ss_pred hhhhCCcccc-cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecC----CCcEEEEcCCC
Confidence 9999888665 789999999999999999875544 5667888999999998 5678888876 99999999764
No 299
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.69 E-value=2.6e-07 Score=101.78 Aligned_cols=293 Identities=12% Similarity=0.190 Sum_probs=184.3
Q ss_pred ccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCC-
Q 001184 344 MHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN- 422 (1130)
Q Consensus 344 ~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~- 422 (1130)
+.-.+.+.++..+|.|+- +|.++.-| +.+-|+...-... +. +..-..-.|..+.|||...
T Consensus 21 l~v~~~~~a~si~p~grd-i~lAsr~g-l~i~dld~p~~pp----r~-------------l~h~tpw~vad~qws~h~a~ 81 (1081)
T KOG0309|consen 21 LKVDGGFNAVSINPSGRD-IVLASRQG-LYIIDLDDPFTPP----RW-------------LHHITPWQVADVQWSPHPAK 81 (1081)
T ss_pred EEecCcccceeeccccch-hhhhhhcC-eEEEeccCCCCCc----ee-------------eeccCcchhcceecccCCCC
Confidence 345678999999999986 77777654 4566665422110 00 0111122466778887532
Q ss_pred -EEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe--cCCCeeeEecCCCcC
Q 001184 423 -FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQFEGHEAP 499 (1130)
Q Consensus 423 -~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd--~~~~~~~~~~~h~~~ 499 (1130)
+-++......-.+|++.....-...+.+.||..+|+++.|.|.... ++++++.|-.+..|| .-...+..+..-...
T Consensus 82 ~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pd-Vlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~ 160 (1081)
T KOG0309|consen 82 PYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPD-VLATCSVDTYVHAWDMRSPHRPFYSTSSWRSA 160 (1081)
T ss_pred ceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCc-ceeeccccccceeeeccCCCcceeeeeccccc
Confidence 4444444555779998765444444568899999999999998877 899999999999999 334566666655666
Q ss_pred EEEEeecccCCccEEEEEecCCcEEEEEccCCcce-eeecCCCccEEEEEEecC-CCeEEEeeecCCCCcEEEEeeCCCC
Q 001184 500 VYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSR-VDYDAPGLWCTTMLYSAD-GSRLFSCGTSKEGDSHLVEWNESEG 577 (1130)
Q Consensus 500 v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-~~~~~~~~~v~~~~~s~~-~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1130)
-..+.|+... +. +++.+..+.|++||.+.+... ..+..+...++.+.|..- ...+.+++. +++|..||....
T Consensus 161 asqVkwnyk~-p~-vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~----d~tvkfw~y~kS 234 (1081)
T KOG0309|consen 161 ASQVKWNYKD-PN-VLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSN----DGTVKFWDYSKS 234 (1081)
T ss_pred CceeeecccC-cc-hhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCC----CCceeeeccccc
Confidence 7778886533 33 444555678999999887654 466667777888887653 233445443 999999998654
Q ss_pred ceeEEEecccCceeEEEEEcCCCCEEEE--EeCCCcEEE---------EeCCC-CceeEEEeccCCCCCcceEEEcCC--
Q 001184 578 ALKRTYIGFRKKSAGVVQFDTTRNRILA--AGEDNQIKF---------WDMDN-VNMLTSTEAEGGLPSLPRLRFNKE-- 643 (1130)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~v---------wd~~~-~~~~~~~~~~~~~~~i~~v~~s~~-- 643 (1130)
..........+.++..-++.|-|.-.+. --.+..+.+ |+..+ .+++..+.+|.. .|....|-..
T Consensus 235 t~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D--~V~eFlWR~r~e 312 (1081)
T KOG0309|consen 235 TTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDD--VVLEFLWRKRKE 312 (1081)
T ss_pred ccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcch--HHHHHhhhhccc
Confidence 3332222223445555556665542222 111113333 33333 346777776654 4444444322
Q ss_pred --------CCEEEEEeCCCcEEEEEcCCC
Q 001184 644 --------GNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 644 --------~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
.-.|++-+.|.++++|-+.+.
T Consensus 313 ~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 313 CDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred ccCCCCccceeEEEeecCCceEeeeccHH
Confidence 236899999999999998653
No 300
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.69 E-value=7.2e-06 Score=92.70 Aligned_cols=197 Identities=10% Similarity=-0.028 Sum_probs=122.2
Q ss_pred cEEEEEEcCCCCE-EEEEeCC---CeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCC--CcEEEEe
Q 001184 411 SVSRVAWSPDGNF-IGVAFTK---HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDD--KLIRVWD 484 (1130)
Q Consensus 411 ~V~~v~~spdg~~-las~~~d---~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d--~~v~iwd 484 (1130)
.+..-.|||||+. ++..+.+ ..|.++|+.+++... +....+......|+|||+. ++++.+.+ ..|.++|
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~----lt~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~d 263 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK----IASSQGMLVVSDVSKDGSK-LLLTMAPKGQPDIYLYD 263 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE----EecCCCcEEeeEECCCCCE-EEEEEccCCCcEEEEEE
Confidence 6788999999985 6654433 569999998876432 3334555677889999986 34444444 4677778
Q ss_pred cCCCeeeEecCCCcCEEEEeecccCCccEEEEEe-cCC--cEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeee
Q 001184 485 LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTA-VDG--KIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGT 561 (1130)
Q Consensus 485 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 561 (1130)
..+.....+..+........|+| ||+.|+-.+ ..+ .|.+.|+++++...... .+.. ...|+|||++++....
T Consensus 264 l~~g~~~~LT~~~~~d~~p~~SP--DG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~g~~--~~~~SPDG~~Ia~~~~ 338 (419)
T PRK04043 264 TNTKTLTQITNYPGIDVNGNFVE--DDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-HGKN--NSSVSTYKNYIVYSSR 338 (419)
T ss_pred CCCCcEEEcccCCCccCccEECC--CCCEEEEEECCCCCceEEEEECCCCCeEeCcc-CCCc--CceECCCCCEEEEEEc
Confidence 55555566655544333445654 555555444 334 56666776655533222 1211 2489999999988775
Q ss_pred cCC-----CCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCC---CcEEEEeCCCC
Q 001184 562 SKE-----GDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGED---NQIKFWDMDNV 620 (1130)
Q Consensus 562 ~~~-----~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~ 620 (1130)
..+ +...|++.|+.++.... +... . ......|+|||+.++....+ ..+.+.+++..
T Consensus 339 ~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~-~-~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 339 ETNNEFGKNTFNLYLISTNSDYIRR-LTAN-G-VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred CCCcccCCCCcEEEEEECCCCCeEE-CCCC-C-CcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 322 12579999998886543 3322 1 22347899999987776543 23666777543
No 301
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.65 E-value=5.4e-05 Score=80.02 Aligned_cols=183 Identities=15% Similarity=0.179 Sum_probs=119.5
Q ss_pred eeEEEEe-cCCCEEEEEeCCeEEEEECCCceeEEEEeC-----CCCCeEEEEEeCCCCcEEEEEeCC--------CcEEE
Q 001184 836 VPCVALS-KNDSYVMSAGGGKVSLFNMMNFKVMTTFMS-----PPPASTFLAFHPQDNNIIAIGMED--------STIQI 901 (1130)
Q Consensus 836 i~~l~~s-~dg~~la~~~dg~i~iwd~~~~~~~~~~~~-----~~~~i~~l~~sp~~~~~lasg~~d--------g~v~i 901 (1130)
...+++. +++.+ +++..+.+.++|..+++....... .....+.+++.| +|.+.++.... |.|+.
T Consensus 42 ~~G~~~~~~~g~l-~v~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 42 PNGMAFDRPDGRL-YVADSGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEEEEEECTTSEE-EEEETTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEE
T ss_pred CceEEEEccCCEE-EEEEcCceEEEecCCCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEE
Confidence 6677787 66555 445555566669998866544442 335578899999 78877766544 44666
Q ss_pred EEeecCeEEEEEecCCCCeeEEEEccCCCeEE-EEeCCCcEEEEECCCCcc-cc-eeeE-eccCCCCCCCeEEEEEcCCC
Q 001184 902 YNVRVDEVKTKLKGHQKHITGLAFSTNLNILV-SSGSDAQLIFWNTDTWEK-RK-SIAI-QLPAGKLPVGETRVQFHSDQ 977 (1130)
Q Consensus 902 wd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~-s~s~Dg~i~vwd~~~~~~-~~-~~~~-~~~~~~~~~~v~~~~~s~d~ 977 (1130)
++.. ++...... .-.....|+|+||++.|+ +-+..+.|..+++..... .. .... ..... ......+++..+|
T Consensus 120 ~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~g~pDG~~vD~~G 195 (246)
T PF08450_consen 120 IDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGG--PGYPDGLAVDSDG 195 (246)
T ss_dssp EETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSS--SCEEEEEEEBTTS
T ss_pred ECCC-CeEEEEec-CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCC--CcCCCcceEcCCC
Confidence 6655 45433333 345578999999999776 556678888888875332 11 1111 11111 1347789999999
Q ss_pred cEEEEE-cCCcEEEEECCCceeeeeeecCCCCCCCeEEEEE-CCCCCEEEEEe
Q 001184 978 VRLLVN-HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAY-SCNSQLIYATF 1028 (1130)
Q Consensus 978 ~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~-s~dg~~l~t~~ 1028 (1130)
.+.++. ..+.|.+++.. |+.+..+... ...+++++| -+|.+.|+..+
T Consensus 196 ~l~va~~~~~~I~~~~p~-G~~~~~i~~p---~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 196 NLWVADWGGGRIVVFDPD-GKLLREIELP---VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp -EEEEEETTTEEEEEETT-SCEEEEEE-S---SSSEEEEEEESTTSSEEEEEE
T ss_pred CEEEEEcCCCEEEEECCC-ccEEEEEcCC---CCCEEEEEEECCCCCEEEEEe
Confidence 987774 68899999988 8888887766 358999999 46767666554
No 302
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.65 E-value=3.6e-06 Score=82.03 Aligned_cols=176 Identities=9% Similarity=-0.004 Sum_probs=121.3
Q ss_pred EEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCc
Q 001184 363 LVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSN 442 (1130)
Q Consensus 363 lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~ 442 (1130)
+..++.|.++++.+++.+..... +.-..-.+.++++|+|++++++.+....|..|.+....
T Consensus 131 ~~i~sndht~k~~~~~~~s~~~~-------------------~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~s 191 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSNKFA-------------------VHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDES 191 (344)
T ss_pred eeeccCCcceeEEEEecCcccce-------------------eeccccceeeeEEcCCCceEEEecCCCcceEEEeCCcc
Confidence 55677888999998876543321 11111238899999999999999999999999997654
Q ss_pred cceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCC-eee----EecCCCcCEEEEeecccCCccEEEE
Q 001184 443 DLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGR-KLF----QFEGHEAPVYSVCPHQKENIHFIFS 516 (1130)
Q Consensus 443 ~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~-~~~----~~~~h~~~v~~~~~~~~~~~~~l~s 516 (1130)
............+.-.+..|+.... .+|++..||++.||| .... +.. +-..|.+.+..+.|++.+-..+|+.
T Consensus 192 ey~~~~~~a~t~D~gF~~S~s~~~~--~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~ 269 (344)
T KOG4532|consen 192 EYIENIYEAPTSDHGFYNSFSENDL--QFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFI 269 (344)
T ss_pred ceeeeeEecccCCCceeeeeccCcc--eEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEE
Confidence 4332223344455667889998887 799999999999999 3322 222 2235889999999987665567777
Q ss_pred EecCCcEEEEEccCCcceeeecCCC--------ccEEEEEEecCCCeEEEe
Q 001184 517 TAVDGKIKAWLYDNVGSRVDYDAPG--------LWCTTMLYSADGSRLFSC 559 (1130)
Q Consensus 517 ~s~dg~i~vwd~~~~~~~~~~~~~~--------~~v~~~~~s~~~~~l~~~ 559 (1130)
.-.-+.+.+-|+++......+.... ..+....|+.++..+.+.
T Consensus 270 sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~ 320 (344)
T KOG4532|consen 270 SEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVK 320 (344)
T ss_pred ecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccc
Confidence 7677889999998876554332221 125555666655555444
No 303
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.64 E-value=3.9e-05 Score=81.10 Aligned_cols=219 Identities=16% Similarity=0.106 Sum_probs=137.4
Q ss_pred eEEEEec-CCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEe-CCCCcEEEEEeCCCcEEEEEeecCeEEEEE
Q 001184 837 PCVALSK-NDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFH-PQDNNIIAIGMEDSTIQIYNVRVDEVKTKL 913 (1130)
Q Consensus 837 ~~l~~s~-dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s-p~~~~~lasg~~dg~v~iwd~~~~~~~~~l 913 (1130)
.+.+|.+ ++.++.+.. .+.|..|+..+++... +.... ...+++. + ++.+++ +... .+.++|..+++.....
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~-~g~l~v-~~~~-~~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRP-DGRLYV-ADSG-GIAVVDPDTGKVTVLA 76 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECT-TSEEEE-EETT-CEEEEETTTTEEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEcc-CCEEEE-EEcC-ceEEEecCCCcEEEEe
Confidence 3578887 555555554 7899999998876644 32222 7778888 5 665554 4444 4666698888654433
Q ss_pred ec-----CCCCeeEEEEccCCCeEEEEeCC--------CcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEE
Q 001184 914 KG-----HQKHITGLAFSTNLNILVSSGSD--------AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRL 980 (1130)
Q Consensus 914 ~~-----h~~~V~~l~~s~dg~~L~s~s~D--------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l 980 (1130)
.. .....+.+++.|+|++.++.... |.|..++.. ++.. ...... .....++|+||++.|
T Consensus 77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~-~~~~~~------~~pNGi~~s~dg~~l 148 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVT-VVADGL------GFPNGIAFSPDGKTL 148 (246)
T ss_dssp EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEE-EEEEEE------SSEEEEEEETTSSEE
T ss_pred eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEE-EEecCc------ccccceEECCcchhe
Confidence 32 33457899999999988876654 446666666 3321 111111 446789999999988
Q ss_pred EEE--cCCcEEEEECCC-ce-e--eeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccc
Q 001184 981 LVN--HETQLAIYDGSK-ME-C--IRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMS 1054 (1130)
Q Consensus 981 ~~~--~d~~i~v~d~~~-~~-~--~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~ 1054 (1130)
++. ..+.|..|++.. +. . ...+.......+....+++..+|++.++....+.|.+++.+ |+++..+....
T Consensus 149 yv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~--- 224 (246)
T PF08450_consen 149 YVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPV--- 224 (246)
T ss_dssp EEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SS---
T ss_pred eecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCC---
Confidence 763 577788888853 22 1 12221111112347899999999988888789999999988 88877776322
Q ss_pred cCCCCCceeeeEEEEEcCCCCC-EEEEE
Q 001184 1055 QASPNSQTVFPLVVTSHPQEPN-QLAVG 1081 (1130)
Q Consensus 1055 ~~~~~~~~~~~~~~~~~~~~~~-~l~s~ 1081 (1130)
..+++++|-..+.+ +++|.
T Consensus 225 --------~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 225 --------PRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp --------SSEEEEEEESTTSSEEEEEE
T ss_pred --------CCEEEEEEECCCCCEEEEEe
Confidence 24667888533434 44443
No 304
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.64 E-value=1.7e-06 Score=83.97 Aligned_cols=95 Identities=20% Similarity=0.342 Sum_probs=72.2
Q ss_pred CeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEE-EEEecCCCCeeEEEEccC-CCe
Q 001184 854 GKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVK-TKLKGHQKHITGLAFSTN-LNI 931 (1130)
Q Consensus 854 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~-~~l~~h~~~V~~l~~s~d-g~~ 931 (1130)
+..++|+++..+.+..-......|++++-+|...+++++|+.||.+-+||.+..... ..++.|..+|+-+-|+|. +..
T Consensus 159 d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~ 238 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEH 238 (319)
T ss_pred cceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchh
Confidence 344555554333222222223449999999977789999999999999999877543 346789999999999984 679
Q ss_pred EEEEeCCCcEEEEECCC
Q 001184 932 LVSSGSDAQLIFWNTDT 948 (1130)
Q Consensus 932 L~s~s~Dg~i~vwd~~~ 948 (1130)
|+++++||.+..||..+
T Consensus 239 Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 239 LFTCSEDGSLWHWDAST 255 (319)
T ss_pred eeEecCCCcEEEEcCCC
Confidence 99999999999999875
No 305
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.64 E-value=2.5e-05 Score=88.96 Aligned_cols=187 Identities=13% Similarity=0.109 Sum_probs=111.6
Q ss_pred EEEEEcCCCcEEEEe-cCCCeeeEecCCCc-CE-E-----EEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCC
Q 001184 470 CIVTCGDDKLIRVWD-LSGRKLFQFEGHEA-PV-Y-----SVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPG 541 (1130)
Q Consensus 470 ~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~-~v-~-----~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 541 (1130)
.++.++.++.+.-+| .+|+.+........ .. . .+.-.+.-.+..++.++.+|.+..+|.++++.........
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 150 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG 150 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC
Confidence 467777788888888 78887766542210 00 0 0000111123567788889999999999998888766544
Q ss_pred ccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCce----eEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001184 542 LWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKS----AGVVQFDTTRNRILAAGEDNQIKFWDM 617 (1130)
Q Consensus 542 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~dg~i~vwd~ 617 (1130)
....+..+. ++ .++++.. ++.|+.+|.++|+.+..+....... ...-.. .+..++.++.+|.+..+|.
T Consensus 151 ~~~ssP~v~-~~-~v~v~~~----~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~ 222 (394)
T PRK11138 151 EALSRPVVS-DG-LVLVHTS----NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLM 222 (394)
T ss_pred ceecCCEEE-CC-EEEEECC----CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEc
Confidence 322222222 33 4444432 7899999999999887775421100 001111 1346777888999999999
Q ss_pred CCCceeEEEeccCCC--CC---cceEEEcC--CCCEEEEEeCCCcEEEEEcCCC
Q 001184 618 DNVNMLTSTEAEGGL--PS---LPRLRFNK--EGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 618 ~~~~~~~~~~~~~~~--~~---i~~v~~s~--~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
.+|+.+......... .. ...+..+| .+..+++++.+|.+..+|..++
T Consensus 223 ~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG 276 (394)
T PRK11138 223 EQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSG 276 (394)
T ss_pred cCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCC
Confidence 999876654322110 00 11111222 2456777778888888888776
No 306
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=3.8e-06 Score=86.70 Aligned_cols=248 Identities=13% Similarity=0.147 Sum_probs=146.5
Q ss_pred eecCCCccEEEEEEcCCCC-EEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEE
Q 001184 404 IVKDSSISVSRVAWSPDGN-FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRV 482 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~-~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~i 482 (1130)
++.+|...|..++|||..+ ++..++.+.+|+|.|+++..++. .+..| ..+++++|.-|..+ +++.|-..|.|.|
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h-~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERH-VIYAGLQNGMVLV 262 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heecc-CCceeeeeccCCcc-eeEEeccCceEEE
Confidence 6889999999999999877 78889999999999999976554 45556 78999999999877 8999999999999
Q ss_pred Ee--cCCCeeeEecC--CCcCEEEEeeccc----CCccEEEEEecCCcEEEEEccCCcce--eeecC-CCccEEEEEEec
Q 001184 483 WD--LSGRKLFQFEG--HEAPVYSVCPHQK----ENIHFIFSTAVDGKIKAWLYDNVGSR--VDYDA-PGLWCTTMLYSA 551 (1130)
Q Consensus 483 wd--~~~~~~~~~~~--h~~~v~~~~~~~~----~~~~~l~s~s~dg~i~vwd~~~~~~~--~~~~~-~~~~v~~~~~s~ 551 (1130)
|| .....+..+.+ ...+|..++..+. +.+.+++..+.+ ...|++...... ..... ..+.+.++.+.+
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~ 340 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHG 340 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence 99 33334444433 2344554432211 122344433332 345654332221 11221 233566677777
Q ss_pred CCCeEEEeeecCCCCcEEE----EeeCCCCceeEEEeccc-Cc------eeEEEEEcCCCCEEEE-EeCCCcEEEEeCCC
Q 001184 552 DGSRLFSCGTSKEGDSHLV----EWNESEGALKRTYIGFR-KK------SAGVVQFDTTRNRILA-AGEDNQIKFWDMDN 619 (1130)
Q Consensus 552 ~~~~l~~~~~~~~~~~~i~----~wd~~~~~~~~~~~~~~-~~------~v~~~~~~~~~~~l~~-~~~dg~i~vwd~~~ 619 (1130)
-.+.++....+...-.+++ --|-.+|..+....... +. .-..+.-.++.++++. ++..+.+.+||..+
T Consensus 341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s 420 (463)
T KOG1645|consen 341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS 420 (463)
T ss_pred ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence 5566655443211111111 11222333322111100 10 0111223455566555 55668899999999
Q ss_pred CceeEEEeccCCCCCcceEEEcC-C-CCEEEEEeCCCcEEEEEcC
Q 001184 620 VNMLTSTEAEGGLPSLPRLRFNK-E-GNLLVVTTADQGIKILANA 662 (1130)
Q Consensus 620 ~~~~~~~~~~~~~~~i~~v~~s~-~-~~~l~~~~~dg~i~iw~~~ 662 (1130)
++.++++.... +|..+.... + +.+|++- .|..++||..+
T Consensus 421 ~evvQ~l~~~e---pv~Dicp~~~n~~syLa~L-Td~~v~Iyk~e 461 (463)
T KOG1645|consen 421 FEVVQTLALSE---PVLDICPNDTNGSSYLALL-TDDRVHIYKNE 461 (463)
T ss_pred hheeeecccCc---ceeecceeecCCcchhhhe-ecceEEEEecC
Confidence 99999987763 566655433 3 3455555 45578887654
No 307
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.59 E-value=1.9e-06 Score=85.35 Aligned_cols=248 Identities=16% Similarity=0.222 Sum_probs=152.5
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCc--cceeeeeeecCC------------CCeeEEEEecCCCceEEEEE
Q 001184 409 SISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSN--DLCQSLEIDAHV------------GGVNDLAFSYPNKQLCIVTC 474 (1130)
Q Consensus 409 ~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~--~~~~~~~~~~h~------------~~V~~i~~s~d~~~l~l~s~ 474 (1130)
...|+++.|...|.|||+|...|.|.+|.-.... ..+-...+++|. ..|..|.|..++.+-.++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4579999999999999999988999999865432 122223455664 34788888877665467777
Q ss_pred cCCCcEEEEecCCCeeeEec----------CCCcCEEEEeecccCCccEEE-EEe-cCCcEEEEEccCCcceeeecCCCc
Q 001184 475 GDDKLIRVWDLSGRKLFQFE----------GHEAPVYSVCPHQKENIHFIF-STA-VDGKIKAWLYDNVGSRVDYDAPGL 542 (1130)
Q Consensus 475 s~d~~v~iwd~~~~~~~~~~----------~h~~~v~~~~~~~~~~~~~l~-s~s-~dg~i~vwd~~~~~~~~~~~~~~~ 542 (1130)
+.|++|++|..-.+-++... ...+++++..- ++. -.+ .|..|.. ..++..-..|..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~-------l~lprls~hd~iiaa-----~p~rvyaNaH~y 173 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKE-------LLLPRLSEHDEIIAA-----KPCRVYANAHPY 173 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHH-------hhcccccccceEEEe-----ccceecccccee
Confidence 88999999993332222111 11222222110 000 000 0111111 111222245667
Q ss_pred cEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCce---eEEEecccC----ceeEEEEEcCCC-CEEEEEeCCCcEEE
Q 001184 543 WCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGAL---KRTYIGFRK----KSAGVVQFDTTR-NRILAAGEDNQIKF 614 (1130)
Q Consensus 543 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~---~~~~~~~~~----~~v~~~~~~~~~-~~l~~~~~dg~i~v 614 (1130)
.+.++.|..|...++++- +-.|.+|++.-..- +..+..|.- ..+++..|+|.. +.+.-.+..|.|++
T Consensus 174 hiNSiS~NsD~et~lSaD-----dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl 248 (460)
T COG5170 174 HINSISFNSDKETLLSAD-----DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKL 248 (460)
T ss_pred EeeeeeecCchheeeecc-----ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEe
Confidence 799999999999999874 78899999764322 122222221 246777888865 45555777899999
Q ss_pred EeCCCCce------eEE--Eec------cCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhccc
Q 001184 615 WDMDNVNM------LTS--TEA------EGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETR 674 (1130)
Q Consensus 615 wd~~~~~~------~~~--~~~------~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 674 (1130)
-|++...+ +.. +.. .+-...|..+.|+++|+++++-.. -+++|||+.....+++++.-|
T Consensus 249 ~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h 321 (460)
T COG5170 249 NDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMH 321 (460)
T ss_pred hhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechH
Confidence 99974321 111 110 112236788999999999887654 589999998776666655433
No 308
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.58 E-value=1.9e-06 Score=85.38 Aligned_cols=255 Identities=14% Similarity=0.237 Sum_probs=162.9
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeec---ccceeeeccccccceeeeeec--CCCccEEEEEEcCC
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVS---KPFKIWDMSNCSMMLQAAIVK--DSSISVSRVAWSPD 420 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~h~~~V~~v~~spd 420 (1130)
..+.|++|.|.-.|.| |++|...|.|.++.-+...--.. .+|+-++. ....++ .-...|..+.|-.+
T Consensus 25 ead~ItaVefd~tg~Y-latGDkgGRVvlfer~~s~~ceykf~teFQshe~-------EFDYLkSleieEKin~I~w~~~ 96 (460)
T COG5170 25 EADKITAVEFDETGLY-LATGDKGGRVVLFEREKSYGCEYKFFTEFQSHEL-------EFDYLKSLEIEEKINAIEWFDD 96 (460)
T ss_pred ccceeeEEEeccccce-EeecCCCceEEEeecccccccchhhhhhhccccc-------chhhhhhccHHHHhhheeeecC
Confidence 4578999999999985 99998889999998665431000 01111000 000111 11346888999876
Q ss_pred CC--EEEEEeCCCeEEEEEecCCc-------------------------cc--------------eeee-eeecCCCCee
Q 001184 421 GN--FIGVAFTKHLIHLYTYQGSN-------------------------DL--------------CQSL-EIDAHVGGVN 458 (1130)
Q Consensus 421 g~--~las~~~d~~i~vwd~~~~~-------------------------~~--------------~~~~-~~~~h~~~V~ 458 (1130)
+. .++..+.|++|++|.+.... .+ .+.. .-..|...|.
T Consensus 97 t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiN 176 (460)
T COG5170 97 TGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHIN 176 (460)
T ss_pred CCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEee
Confidence 54 45566789999999985420 00 0000 1146777889
Q ss_pred EEEEecCCCceEEEEEcCCCcEEEEe--c-CCC-eeeEecCCC-----cCEEEEeecccCCccEEEEEecCCcEEEEEcc
Q 001184 459 DLAFSYPNKQLCIVTCGDDKLIRVWD--L-SGR-KLFQFEGHE-----APVYSVCPHQKENIHFIFSTAVDGKIKAWLYD 529 (1130)
Q Consensus 459 ~i~~s~d~~~l~l~s~s~d~~v~iwd--~-~~~-~~~~~~~h~-----~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~ 529 (1130)
+++|..|.+ .++++ .|=.|-+|+ . .+. .+..++.|. .-|++..|+|... ..+...+..|.|++-|++
T Consensus 177 SiS~NsD~e--t~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~c-n~fmYSsSkG~Ikl~DlR 252 (460)
T COG5170 177 SISFNSDKE--TLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMC-NVFMYSSSKGEIKLNDLR 252 (460)
T ss_pred eeeecCchh--eeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHc-ceEEEecCCCcEEehhhh
Confidence 999999888 45555 577899999 2 222 233344443 4577888887554 566777788999999998
Q ss_pred CCc------ceee--e--------cCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCC-ceeEEEecccC----
Q 001184 530 NVG------SRVD--Y--------DAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG-ALKRTYIGFRK---- 588 (1130)
Q Consensus 530 ~~~------~~~~--~--------~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~---- 588 (1130)
... .... + ......|..+.|+++|+++++-. --+|.+||.... .++.+..-|..
T Consensus 253 q~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-----yltvkiwDvnm~k~pikTi~~h~~l~~~ 327 (460)
T COG5170 253 QSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-----YLTVKIWDVNMAKNPIKTIPMHCDLMDE 327 (460)
T ss_pred hhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-----cceEEEEecccccCCceeechHHHHHHH
Confidence 321 1111 1 11223678899999999999865 578999998753 45666644422
Q ss_pred -------cee---EEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001184 589 -------KSA---GVVQFDTTRNRILAAGEDNQIKFWDM 617 (1130)
Q Consensus 589 -------~~v---~~~~~~~~~~~l~~~~~dg~i~vwd~ 617 (1130)
..| ..+.|+.+.+.+++|+..+..-+|-.
T Consensus 328 l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 328 LNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred HHhhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence 112 23678888888999888777766653
No 309
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.58 E-value=7.1e-06 Score=92.10 Aligned_cols=114 Identities=11% Similarity=0.096 Sum_probs=88.9
Q ss_pred EEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcee
Q 001184 544 CTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNML 623 (1130)
Q Consensus 544 v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 623 (1130)
.+-..|.|...++++++.+....|.|.||- .+|++.+...- .-.+.++||+|..-.++.|-+-|.+.+|...+.+.-
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~--P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h 94 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY--PVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETH 94 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc--ceehhhhccChHHHHHhhccccceeEEEecCCceee
Confidence 344678999999999988888889999986 56665443332 113556999998878888888999999998776654
Q ss_pred EEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcC
Q 001184 624 TSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANA 662 (1130)
Q Consensus 624 ~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~ 662 (1130)
..... +..+|..+.||++|..+.++..-|.+.+|...
T Consensus 95 tv~~t--h~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 95 TVVET--HPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeccC--CCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 44433 34489999999999999999999999999876
No 310
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.57 E-value=0.00017 Score=75.52 Aligned_cols=203 Identities=20% Similarity=0.221 Sum_probs=133.6
Q ss_pred EEEEecCCCEEEEEe---CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEee-cCeEEEEE
Q 001184 838 CVALSKNDSYVMSAG---GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVR-VDEVKTKL 913 (1130)
Q Consensus 838 ~l~~s~dg~~la~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~-~~~~~~~l 913 (1130)
.+++|.||+++.+.. .-.|.|.|+..++.+.++.... +..+--++ +.-+.+-+.||++.-..+. .|+...+-
T Consensus 99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG--C~~iyP~~--~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~ 174 (342)
T PF06433_consen 99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG--CWLIYPSG--NRGFSMLCGDGSLLTVTLDADGKEAQKS 174 (342)
T ss_dssp GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS--EEEEEEEE--TTEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC--EEEEEecC--CCceEEEecCCceEEEEECCCCCEeEee
Confidence 357888999888876 4779999999999998887433 33333233 3457788899999998887 55554322
Q ss_pred ----ecCCCCe-eEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccC------CCCCCCeEEEEEcCCCcEEEE
Q 001184 914 ----KGHQKHI-TGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPA------GKLPVGETRVQFHSDQVRLLV 982 (1130)
Q Consensus 914 ----~~h~~~V-~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~------~~~~~~v~~~~~s~d~~~l~~ 982 (1130)
..-.+++ ..-+++.++..++-.+-+|.|+--|+............... +=.+++-..+++++....|.+
T Consensus 175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyv 254 (342)
T PF06433_consen 175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYV 254 (342)
T ss_dssp EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEE
T ss_pred ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEE
Confidence 1122222 24455556667777888999988888876543333333221 112245566888877666655
Q ss_pred ----EcC-------CcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCC-EEEEEe-CCCcEEEEeCCCcccccccC
Q 001184 983 ----NHE-------TQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQ-LIYATF-TDGSIGVFDADSLRLRCRIA 1048 (1130)
Q Consensus 983 ----~~d-------~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~-~l~t~~-~Dg~i~vwd~~~~~~~~~~~ 1048 (1130)
+.+ ..|-+||+.+++.+..+... .++.+|.+|.|.+ +|++.+ .++.+.|||..+|+.+..+.
T Consensus 255 LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~----~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 255 LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE----HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE----EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred EecCCCCCCccCCceEEEEEECCCCeEEEEEeCC----CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 212 24889999999999998864 4788999999888 665544 57999999999999988876
No 311
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=3.8e-06 Score=87.80 Aligned_cols=211 Identities=10% Similarity=0.157 Sum_probs=144.2
Q ss_pred cCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCC----CeeeEecCCCcCEEEEeecccCCccEEEEEec-CCcEEEE
Q 001184 452 AHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSG----RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAV-DGKIKAW 526 (1130)
Q Consensus 452 ~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg~i~vw 526 (1130)
-|.+.|+.+.-+.. + ++.+++.||.++.|..+. +.+..+..|-+.|.+++.+ -++.++.|.+. |..++++
T Consensus 7 mhrd~i~hv~~tka-~--fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S--~dg~L~~Sv~d~Dhs~Kvf 81 (558)
T KOG0882|consen 7 MHRDVITHVFPTKA-K--FIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVS--YDGWLFRSVEDPDHSVKVF 81 (558)
T ss_pred cccceeeeEeeehh-h--eEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhcc--ccceeEeeccCcccceeEE
Confidence 47777877766643 3 799999999999999443 2345567788888888774 45577888777 9999999
Q ss_pred EccCCcceee--ecCCCccEEEEEEecCC--CeEEEeeecCCCCcEEEEeeCCCCc-eeEEEecccCceeEEEEEcCCCC
Q 001184 527 LYDNVGSRVD--YDAPGLWCTTMLYSADG--SRLFSCGTSKEGDSHLVEWNESEGA-LKRTYIGFRKKSAGVVQFDTTRN 601 (1130)
Q Consensus 527 d~~~~~~~~~--~~~~~~~v~~~~~s~~~--~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~ 601 (1130)
|+++....-. +......+. .+...| .-+++.+. -.++.+.++|-.... ....+.+.+-.+|.++.+.+.+.
T Consensus 82 DvEn~DminmiKL~~lPg~a~--wv~skGd~~s~IAVs~--~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D 157 (558)
T KOG0882|consen 82 DVENFDMINMIKLVDLPGFAE--WVTSKGDKISLIAVSL--FKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD 157 (558)
T ss_pred EeeccchhhhcccccCCCceE--EecCCCCeeeeEEeec--ccCCCcEEECCcCCcCccceecccccCceEEEEeecccc
Confidence 9987554422 222222121 122223 22222221 237889999976543 44455555666899999999999
Q ss_pred EEEEEeCCCcEEEEeCCC------CceeEEEec-------cCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhh
Q 001184 602 RILAAGEDNQIKFWDMDN------VNMLTSTEA-------EGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRAL 668 (1130)
Q Consensus 602 ~l~~~~~dg~i~vwd~~~------~~~~~~~~~-------~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 668 (1130)
.+++....|.|.-|.... .+....++. ........++.|+|++..+.+-+.|..|+++...++ ...
T Consensus 158 s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtG-klv 236 (558)
T KOG0882|consen 158 SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTG-KLV 236 (558)
T ss_pred ceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccc-hhh
Confidence 999999999999999873 111111111 112235689999999999999999999999999988 555
Q ss_pred hhhc
Q 001184 669 RAIE 672 (1130)
Q Consensus 669 ~~~~ 672 (1130)
+.++
T Consensus 237 qeiD 240 (558)
T KOG0882|consen 237 QEID 240 (558)
T ss_pred hhhh
Confidence 5544
No 312
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.57 E-value=8.6e-07 Score=91.78 Aligned_cols=160 Identities=15% Similarity=0.099 Sum_probs=101.4
Q ss_pred eeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEE----EcCCcEEEEECCC
Q 001184 920 ITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV----NHETQLAIYDGSK 995 (1130)
Q Consensus 920 V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~----~~d~~i~v~d~~~ 995 (1130)
+..+..++++++||++..+....++++........ ....... +..-..+.|..+.....+ ++...+.+|....
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~k-l~~~~~v--~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~ 141 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAK-LLDVSCV--PKRPTAISFIREDTSVLVADKAGDVYSFDILSADS 141 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcce-eeeEeec--ccCcceeeeeeccceEEEEeecCCceeeeeecccc
Confidence 34456677788888888777777777665433111 1111100 022334444444443332 3456677777666
Q ss_pred ceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCC
Q 001184 996 MECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEP 1075 (1130)
Q Consensus 996 ~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1075 (1130)
+.+... .+|-+-++.++||||+++|.++..|..|||-.+..--.+..+-. +|.+-+..+++. ++
T Consensus 142 ~~~~~~----lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfcl--------GH~eFVS~isl~----~~ 205 (390)
T KOG3914|consen 142 GRCEPI----LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCL--------GHKEFVSTISLT----DN 205 (390)
T ss_pred cCcchh----hhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhcc--------ccHhheeeeeec----cC
Confidence 443322 34478999999999999999999999999998875554444321 123333334443 46
Q ss_pred CEEEEEeCCCcEEEEeCCCCccC
Q 001184 1076 NQLAVGLTDGSVKVIEPSETERK 1098 (1130)
Q Consensus 1076 ~~l~s~~~Dg~v~vW~~~~~~~~ 1098 (1130)
+.|++||.|++|++||+.++..-
T Consensus 206 ~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 206 YLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred ceeeecCCCCcEEEEecccCCcc
Confidence 78999999999999999998864
No 313
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.57 E-value=0.00035 Score=68.32 Aligned_cols=137 Identities=9% Similarity=-0.011 Sum_probs=87.9
Q ss_pred cEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCcee
Q 001184 512 HFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSA 591 (1130)
Q Consensus 512 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v 591 (1130)
.+++.|+-.+.+.--|..++....+-.... .+.+-+.- -|++++.+.. .+.+++.+.++|.....+.....-.+
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~ilg~-RiE~sa~v-vgdfVV~GCy----~g~lYfl~~~tGs~~w~f~~~~~vk~ 97 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAILGV-RIECSAIV-VGDFVVLGCY----SGGLYFLCVKTGSQIWNFVILETVKV 97 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhhCc-eeeeeeEE-ECCEEEEEEc----cCcEEEEEecchhheeeeeehhhhcc
Confidence 455666666666666666655554332222 22222222 4677888887 88999999999988777765333122
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEE
Q 001184 592 GVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIK 657 (1130)
Q Consensus 592 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~ 657 (1130)
.....+++..+..|+.|+..+..|..+..++...+..+. ...+-+..|-...|..+...|.+.
T Consensus 98 -~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~--~f~sP~i~~g~~sly~a~t~G~vl 160 (354)
T KOG4649|consen 98 -RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGG--TFVSPVIAPGDGSLYAAITAGAVL 160 (354)
T ss_pred -ceEEcCCCceEEEecCCCcEEEecccccceEEecccCCc--eeccceecCCCceEEEEeccceEE
Confidence 245678899999999999999999999999888776654 233344555233344454555443
No 314
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=1.8e-06 Score=90.26 Aligned_cols=257 Identities=14% Similarity=0.117 Sum_probs=169.7
Q ss_pred ccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCE
Q 001184 344 MHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNF 423 (1130)
Q Consensus 344 ~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 423 (1130)
+-|.+.|+.|.-+-.. ++.+++.||.++.|.-..-.-+. | ..-+..|-+.|.+++.|-||..
T Consensus 6 ymhrd~i~hv~~tka~--fiiqASlDGh~KFWkKs~isGvE---f-------------VKhFraHL~~I~sl~~S~dg~L 67 (558)
T KOG0882|consen 6 YMHRDVITHVFPTKAK--FIIQASLDGHKKFWKKSRISGVE---F-------------VKHFRAHLGVILSLAVSYDGWL 67 (558)
T ss_pred hcccceeeeEeeehhh--eEEeeecchhhhhcCCCCcccee---e-------------hhhhHHHHHHHHhhhcccccee
Confidence 3488888888776654 68999999999999754311111 0 0125678899999999999999
Q ss_pred EEEEeC-CCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCC-CceEEEEEcCCCcEEEEe--cCC-CeeeEecCCCc
Q 001184 424 IGVAFT-KHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPN-KQLCIVTCGDDKLIRVWD--LSG-RKLFQFEGHEA 498 (1130)
Q Consensus 424 las~~~-d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~-~~l~l~s~s~d~~v~iwd--~~~-~~~~~~~~h~~ 498 (1130)
+++.+. |..++++|++.-..+.-. .+..-.+.+. +..++.. ..++.++.-.++.+.|+| .++ +....-.-|..
T Consensus 68 ~~Sv~d~Dhs~KvfDvEn~Dminmi-KL~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~s 145 (558)
T KOG0882|consen 68 FRSVEDPDHSVKVFDVENFDMINMI-KLVDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFS 145 (558)
T ss_pred EeeccCcccceeEEEeeccchhhhc-ccccCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccC
Confidence 999877 999999999875543211 1221222221 1222221 111444555688999999 344 23344456999
Q ss_pred CEEEEeecccCCccEEEEEecCCcEEEEEccC----Cc--cee---------eecCCCccEEEEEEecCCCeEEEeeecC
Q 001184 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDN----VG--SRV---------DYDAPGLWCTTMLYSADGSRLFSCGTSK 563 (1130)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~----~~--~~~---------~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1130)
+|..+.+.+.. ...++....|.|.-|..+. .+ ... .+........++.|+|+|..+.+.+.
T Consensus 146 PV~~i~y~qa~--Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~-- 221 (558)
T KOG0882|consen 146 PVKKIRYNQAG--DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNP-- 221 (558)
T ss_pred ceEEEEeeccc--cceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCc--
Confidence 99999987665 5688888889999998763 11 111 12222335789999999999998875
Q ss_pred CCCcEEEEeeCCCCceeEEEecc--------------------------------cCceeEEEEEcCCCCEEEEEeCCCc
Q 001184 564 EGDSHLVEWNESEGALKRTYIGF--------------------------------RKKSAGVVQFDTTRNRILAAGEDNQ 611 (1130)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~--------------------------------~~~~v~~~~~~~~~~~l~~~~~dg~ 611 (1130)
+..|++++.++|++++.+... .......++|...+++|+-|+-=|
T Consensus 222 --DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g- 298 (558)
T KOG0882|consen 222 --DRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG- 298 (558)
T ss_pred --ccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-
Confidence 899999999998876654311 111223356777777777766544
Q ss_pred EEEEeCCCCceeEEEe
Q 001184 612 IKFWDMDNVNMLTSTE 627 (1130)
Q Consensus 612 i~vwd~~~~~~~~~~~ 627 (1130)
|+|.++.++++++.+.
T Consensus 299 ikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 299 IKVINLDTNTVVRILG 314 (558)
T ss_pred EEEEEeecCeEEEEec
Confidence 7777777776666553
No 315
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.54 E-value=6.2e-07 Score=91.68 Aligned_cols=119 Identities=14% Similarity=0.217 Sum_probs=98.9
Q ss_pred hHHHHHHHHHhhhhccHHHHHHHHHHhcCCC--------ccHHHHHHHHhccCHHHHHHHhccCC-CcCCCccchhhhHH
Q 001184 5 SRELVFLILQFLDEEKFKESVHRLEQESGFF--------FNMKYFEEKALAGEWDEIEKYLSGFT-KVDDNRYSMKIFFE 75 (1130)
Q Consensus 5 ~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~--------~~~~~~~~~i~~g~w~~~~~~l~~~~-~~~~~~~~~~~~~~ 75 (1130)
++=+.|+|..||..+||.++|..|-++|++. .++..++++|++|+...|+.-.+.-. .+. +....+-|.
T Consensus 115 r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~Lk--K~~S~lEf~ 192 (389)
T KOG0396|consen 115 RNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELK--KEESSLEFQ 192 (389)
T ss_pred HHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH--hccchhhhH
Confidence 4558899999999999999999999999985 13778999999999999988776541 111 222347899
Q ss_pred HHHhHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccccc
Q 001184 76 IRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFR 125 (1130)
Q Consensus 76 i~~~~~lell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~~~ 125 (1130)
++.|.|+||+..+++.+|+.+.++.+.|......++++....+|.++...
T Consensus 193 lRlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~t 242 (389)
T KOG0396|consen 193 LRLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKYT 242 (389)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCcccc
Confidence 99999999999999999999999999999876678888888888876443
No 316
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.53 E-value=1.9e-05 Score=83.29 Aligned_cols=192 Identities=18% Similarity=0.162 Sum_probs=119.6
Q ss_pred CCCEEEEE-eCCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEE-ecCCC---
Q 001184 844 NDSYVMSA-GGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKL-KGHQK--- 918 (1130)
Q Consensus 844 dg~~la~~-~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l-~~h~~--- 918 (1130)
++..++++ .++.|..||..+|+.+............... .+..+++++.++.|+.+|..+|+.+-.. .....
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~---~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~ 111 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVV---DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG 111 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEE---ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeee---cccccccccceeeeEecccCCcceeeeeccccccccc
Confidence 44555555 5899999999999998888753221122222 2335566778889999999999988874 33211
Q ss_pred CeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCC----CCeEEEEEcCCCcEEEEEcCCcEEEEECC
Q 001184 919 HITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLP----VGETRVQFHSDQVRLLVNHETQLAIYDGS 994 (1130)
Q Consensus 919 ~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~----~~v~~~~~s~d~~~l~~~~d~~i~v~d~~ 994 (1130)
.........++..++.+..++.|..+|+++|+..-............ .....-....++..++++.++.+.-+|..
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~ 191 (238)
T PF13360_consen 112 VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVDLA 191 (238)
T ss_dssp TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEETT
T ss_pred cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEEECC
Confidence 12233334448889999989999999999987654443322111100 11122223335555555556654444999
Q ss_pred CceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccc
Q 001184 995 KMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLR 1044 (1130)
Q Consensus 995 ~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~ 1044 (1130)
+++.+.... . ..+.. ....++..|+.++.++.|..||+.+|+..
T Consensus 192 tg~~~w~~~-~----~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 192 TGEKLWSKP-I----SGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp TTEEEEEEC-S----S-ECE-CEECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred CCCEEEEec-C----CCccC-CceeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence 999664222 1 12222 13567788888889999999999999864
No 317
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.50 E-value=1.6e-05 Score=93.89 Aligned_cols=275 Identities=10% Similarity=0.120 Sum_probs=162.4
Q ss_pred ccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCC
Q 001184 767 ASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDS 846 (1130)
Q Consensus 767 ~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~ 846 (1130)
...|.++.|-.++..++.+...|.|.+-|..+.... +.+.-...|.+++||||++
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-------------------------ivg~vd~GI~aaswS~Dee 122 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE-------------------------IVGNVDNGISAASWSPDEE 122 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccccee-------------------------eeeeccCceEEEeecCCCc
Confidence 478999999999999999999999987654332211 1123577899999999999
Q ss_pred EEEEEeCCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCe-----EEEEEe-----cC
Q 001184 847 YVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDE-----VKTKLK-----GH 916 (1130)
Q Consensus 847 ~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~-----~~~~l~-----~h 916 (1130)
.++....+...++...+..++.....+. .-.+ .++.+ ..++...=.-+.-..|+ .+...+ .-
T Consensus 123 ~l~liT~~~tll~mT~~f~~i~E~~L~~------d~~~-~sk~v-~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~ 194 (1265)
T KOG1920|consen 123 LLALITGRQTLLFMTKDFEPIAEKPLDA------DDER-KSKFV-NVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQ 194 (1265)
T ss_pred EEEEEeCCcEEEEEeccccchhcccccc------cccc-ccccc-eecccccceeeecchhhhcccccccccccccchhh
Confidence 9999886444444444444443322111 1111 12222 22222211111111111 000000 11
Q ss_pred CCCeeEEEEccCCCeEEEEe-----CCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEE----EcCCc
Q 001184 917 QKHITGLAFSTNLNILVSSG-----SDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV----NHETQ 987 (1130)
Q Consensus 917 ~~~V~~l~~s~dg~~L~s~s-----~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~----~~d~~ 987 (1130)
.+.=+.|.|--||+++|+.. ....|+|||-+ +..... .......-.+++|-|.|.++++ ++++.
T Consensus 195 ~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~------se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~ 267 (1265)
T KOG1920|consen 195 DDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNST------SEPVEGLQHSLSWKPSGSLIAAIQCKTSDSD 267 (1265)
T ss_pred ccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcc------cCcccccccceeecCCCCeEeeeeecCCCCc
Confidence 22235699999999998832 23789999988 322111 1111244568999999999998 35778
Q ss_pred EEEEECCCceeeeeeecCCCC-CCCeEEEEECCCCCEEEE---EeCCCcEEEEeCCCcccccccCCCcccccCCCCCcee
Q 001184 988 LAIYDGSKMECIRQWVPQDVL-SSPISSAAYSCNSQLIYA---TFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTV 1063 (1130)
Q Consensus 988 i~v~d~~~~~~~~~~~~~~~~-~~~v~~v~~s~dg~~l~t---~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 1063 (1130)
|.+|.-.... -..+...... ..+|..++|+.++..||+ ......|++|-..+...-...... . ....
T Consensus 268 IvffErNGL~-hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~--~------~~~~ 338 (1265)
T KOG1920|consen 268 IVFFERNGLR-HGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQ--F------SQKA 338 (1265)
T ss_pred EEEEecCCcc-ccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEe--c------cccc
Confidence 9999865322 2222111111 334999999999999998 444555999988765432221110 0 1111
Q ss_pred eeEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 001184 1064 FPLVVTSHPQEPNQLAVGLTDGSVKVIEPS 1093 (1130)
Q Consensus 1064 ~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~ 1093 (1130)
-+.|+|..+..|..-..+|...+.++.
T Consensus 339 ---~~~W~p~~~~~L~v~~~sG~~~v~~~~ 365 (1265)
T KOG1920|consen 339 ---LLMWDPVTEKTLHVLRESGQRLVRDFA 365 (1265)
T ss_pred ---cccccCCCceeEEEEecCCcEEEEEEE
Confidence 178888777777777678877777764
No 318
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.44 E-value=0.00035 Score=68.37 Aligned_cols=115 Identities=10% Similarity=0.076 Sum_probs=79.4
Q ss_pred EEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeCCCeE
Q 001184 354 DFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLI 433 (1130)
Q Consensus 354 ~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~~i 433 (1130)
..-||.+++++.|+..+.+.--|..+|+.+-... + ...|-+-+.- -|++++.|...|.+
T Consensus 17 VV~~dskT~v~igSHs~~~~avd~~sG~~~We~i-----------------l---g~RiE~sa~v-vgdfVV~GCy~g~l 75 (354)
T KOG4649|consen 17 VVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI-----------------L---GVRIECSAIV-VGDFVVLGCYSGGL 75 (354)
T ss_pred EEecCCceEEEEecCCceEEEecCCCCcEEeehh-----------------h---CceeeeeeEE-ECCEEEEEEccCcE
Confidence 3455667789999999999999999998764211 1 1122222221 47789999999999
Q ss_pred EEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEec
Q 001184 434 HLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFE 494 (1130)
Q Consensus 434 ~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~ 494 (1130)
.+-+.++|........+.. -=......+++. ++..|+.|++.+..| .+..++...+
T Consensus 76 Yfl~~~tGs~~w~f~~~~~---vk~~a~~d~~~g--lIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 76 YFLCVKTGSQIWNFVILET---VKVRAQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred EEEEecchhheeeeeehhh---hccceEEcCCCc--eEEEecCCCcEEEecccccceEEecc
Confidence 9999999976653322221 112234556777 899999999999999 7767766644
No 319
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.42 E-value=5.2e-06 Score=94.44 Aligned_cols=179 Identities=17% Similarity=0.237 Sum_probs=134.0
Q ss_pred CCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeE
Q 001184 844 NDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITG 922 (1130)
Q Consensus 844 dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 922 (1130)
++..++.|+ ...+..+|+.+.+..+......+.|+-++. +++++.+|...|+|.+-|..+.+.+.++..|++.|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence 445566666 788999999999888887766656776765 6789999999999999999999999999999999987
Q ss_pred EEEccCCCeEEEEeC---------CCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCC--CcEEEEEcCCcEEEE
Q 001184 923 LAFSTNLNILVSSGS---------DAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSD--QVRLLVNHETQLAIY 991 (1130)
Q Consensus 923 l~~s~dg~~L~s~s~---------Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d--~~~l~~~~d~~i~v~ 991 (1130)
+.. .|+.|+++|. |..|+|||+..-+.. .+++++.+ ..-+.|.|. .+.++++..|...+-
T Consensus 223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral--~PI~~~~~-----P~flrf~Psl~t~~~V~S~sGq~q~v 293 (1118)
T KOG1275|consen 223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRAL--SPIQFPYG-----PQFLRFHPSLTTRLAVTSQSGQFQFV 293 (1118)
T ss_pred eec--cCCeEEEeecccccccccccchhhhhhhhhhhcc--CCcccccC-----chhhhhcccccceEEEEecccceeec
Confidence 665 5899999985 667899999884432 22222222 234556664 344555788899988
Q ss_pred ECCC-cee---eeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEe
Q 001184 992 DGSK-MEC---IRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFD 1037 (1130)
Q Consensus 992 d~~~-~~~---~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd 1037 (1130)
|..+ +.. +..+.+. ...+.++++|++|..||.|..+|.|.+|-
T Consensus 294 d~~~lsNP~~~~~~v~p~---~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 294 DTATLSNPPAGVKMVNPN---GSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cccccCCCccceeEEccC---CCcceeEEecCCCceEEEecccCcEeeec
Confidence 8432 222 2222222 45599999999999999999999999996
No 320
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=98.41 E-value=8.6e-07 Score=84.50 Aligned_cols=135 Identities=22% Similarity=0.218 Sum_probs=97.0
Q ss_pred HHHHHHHHhccCHHHHHHHhccCCCcCCCccchhhhHHHHHhHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHH
Q 001184 38 MKYFEEKALAGEWDEIEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQ 117 (1130)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ 117 (1130)
...++++|++|+++.|++.++......... ...+.|.|+.|+|+||+..++..+|+.+.|+.+.|......+.++.+..
T Consensus 5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~-~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~~ 83 (145)
T PF10607_consen 5 RKKIRQAILNGDIDPAIEWLNENFPELLKR-NSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLMS 83 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHHhc-CCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 568999999999999999998873221111 2348999999999999999999999999999997765434577888888
Q ss_pred hhccccccc--ccccccCCCChhHHHHHHHHHHhhcccCcCccccccCCCCC-hHHHHHHHHHHHHHHH
Q 001184 118 LLTLENFRE--NEQLSKYGDTRSARTIMLVELKKLIEANPLFRDKLVFPSLK-TSRLRTLINQSLNWQH 183 (1130)
Q Consensus 118 ll~~~~~~~--~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~p-~~rL~~ll~qa~~~q~ 183 (1130)
+|...+..+ ...+...-+ .+.|.++.+.+.+.+-...- +| .+.|..++.+....+.
T Consensus 84 lL~~~~~~~~~~s~~~~l~~-~~~~~~la~~~~~~~l~~~~---------~~~~s~L~~~~~~g~~~l~ 142 (145)
T PF10607_consen 84 LLAYPDPEEPLPSPYKELLS-PERREELAEEFNSAILKSYG---------LPKESPLEVILKAGLSALK 142 (145)
T ss_pred HHHcCCcccccchHHHHHhC-hHHHHHHHHHHHHHHHHHhC---------cCCCCHHHHHHHHHHHHhh
Confidence 888776554 222222222 37788888888876544211 33 4668888887765543
No 321
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.41 E-value=8.8e-07 Score=62.24 Aligned_cols=39 Identities=28% Similarity=0.572 Sum_probs=37.1
Q ss_pred CeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEE
Q 001184 907 DEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWN 945 (1130)
Q Consensus 907 ~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd 945 (1130)
++++.++.+|.+.|++|+|+|++.+|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 322
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.38 E-value=0.00011 Score=82.05 Aligned_cols=265 Identities=16% Similarity=0.180 Sum_probs=143.6
Q ss_pred ecCCCeEEEEE--------eCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEE
Q 001184 356 HPFHHTLLVVG--------CGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVA 427 (1130)
Q Consensus 356 spdg~~llasg--------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~ 427 (1130)
|||++++|+.- +..+.+.|||+++++.... ......+....|||||+++|..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l--------------------~~~~~~~~~~~~sP~g~~~~~v 60 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPL--------------------TPPPPKLQDAKWSPDGKYIAFV 60 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEES--------------------S-EETTBSEEEE-SSSTEEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEEC--------------------cCCccccccceeecCCCeeEEE
Confidence 68888755522 2245789999998776541 1115678899999999999998
Q ss_pred eCCCeEEEEEecCCccceeeeeeecC----------------CCCeeEEEEecCCCceEEEEEc-CCCcEEE--------
Q 001184 428 FTKHLIHLYTYQGSNDLCQSLEIDAH----------------VGGVNDLAFSYPNKQLCIVTCG-DDKLIRV-------- 482 (1130)
Q Consensus 428 ~~d~~i~vwd~~~~~~~~~~~~~~~h----------------~~~V~~i~~s~d~~~l~l~s~s-~d~~v~i-------- 482 (1130)
. ++.|.+++..++...+. +..|- -+.-..+-|||||++ |+... .+..|+.
T Consensus 61 ~-~~nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~--la~~~~d~~~v~~~~~~~~~~ 135 (353)
T PF00930_consen 61 R-DNNLYLRDLATGQETQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKY--LAFLRFDEREVPEYPLPDYSP 135 (353)
T ss_dssp E-TTEEEEESSTTSEEEES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSE--EEEEEEE-TTS-EEEEEEESS
T ss_pred e-cCceEEEECCCCCeEEe--ccccceeEEcCccceeccccccccccceEECCCCCE--EEEEEECCcCCceEEeeccCC
Confidence 6 57899999887743321 22220 122356889999995 33322 2232322
Q ss_pred ---------------------------Ee-cCCCeee--Ee---cCCCcCEEEEeecccCCccEEE--EEecCC---cEE
Q 001184 483 ---------------------------WD-LSGRKLF--QF---EGHEAPVYSVCPHQKENIHFIF--STAVDG---KIK 524 (1130)
Q Consensus 483 ---------------------------wd-~~~~~~~--~~---~~h~~~v~~~~~~~~~~~~~l~--s~s~dg---~i~ 524 (1130)
+| .+++... .. ..-...+..+.|.++ +..|+ ....+. .+.
T Consensus 136 ~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d--~~~l~~~~~nR~q~~~~l~ 213 (353)
T PF00930_consen 136 PDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPD--GKRLWVQWLNRDQNRLDLV 213 (353)
T ss_dssp STESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEET--TEEEEEEEEETTSTEEEEE
T ss_pred ccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCC--CcEEEEEEcccCCCEEEEE
Confidence 22 1111100 00 112223444555433 23222 222222 345
Q ss_pred EEEccCCcceeeecC-CCccE---EEEEEe-cCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCcee-EEEEEcC
Q 001184 525 AWLYDNVGSRVDYDA-PGLWC---TTMLYS-ADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSA-GVVQFDT 598 (1130)
Q Consensus 525 vwd~~~~~~~~~~~~-~~~~v---~~~~~s-~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v-~~~~~~~ 598 (1130)
++|..++........ ...++ ....|. +++..++..+. .++-..|++++...+... .+.... ..| ..+.+++
T Consensus 214 ~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~-~~G~~hly~~~~~~~~~~-~lT~G~-~~V~~i~~~d~ 290 (353)
T PF00930_consen 214 LCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISE-RDGYRHLYLYDLDGGKPR-QLTSGD-WEVTSILGWDE 290 (353)
T ss_dssp EEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEE-TTSSEEEEEEETTSSEEE-ESS-SS-S-EEEEEEEEC
T ss_pred EEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEE-cCCCcEEEEEccccccee-ccccCc-eeecccceEcC
Confidence 556665544432221 22222 245554 88888887775 777889999998877644 333222 245 4578888
Q ss_pred CCCEEEE-EeC----CCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeC
Q 001184 599 TRNRILA-AGE----DNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTA 652 (1130)
Q Consensus 599 ~~~~l~~-~~~----dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~ 652 (1130)
+++.|+. +.. ...|+.-++..+..+..+...... ...+.|||++++++....
T Consensus 291 ~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~--~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 291 DNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGD--HYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp TSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSST--TEEEEE-TTSSEEEEEEE
T ss_pred CCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCC--ceEEEECCCCCEEEEEEc
Confidence 8876654 443 235666677723344455444331 158999999998876543
No 323
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.37 E-value=1.1e-06 Score=88.68 Aligned_cols=166 Identities=16% Similarity=0.112 Sum_probs=124.4
Q ss_pred EEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeCC
Q 001184 351 VSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTK 430 (1130)
Q Consensus 351 ~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d 430 (1130)
+.++||-+-.-+-++.+.+-.|-|-|+++|-.-. + ..++.|.++.|...+.++..|+.+
T Consensus 215 ~~CawSlni~gyhfs~G~sqqv~L~nvetg~~qs--------------------f-~sksDVfAlQf~~s~nLv~~GcRn 273 (425)
T KOG2695|consen 215 WSCAWSLNIMGYHFSVGLSQQVLLTNVETGHQQS--------------------F-QSKSDVFALQFAGSDNLVFNGCRN 273 (425)
T ss_pred hhhhhhhccceeeecccccceeEEEEeecccccc--------------------c-ccchhHHHHHhcccCCeeEecccC
Confidence 3446664432223445557788999998876432 2 246679999999989999999999
Q ss_pred CeEEEEEecCCcc--ceeeeeeecCCCCeeEEEEec-CCCceEEEEEcCCCcEEEEe-cCCCe---eeEecCCCcCEEEE
Q 001184 431 HLIHLYTYQGSND--LCQSLEIDAHVGGVNDLAFSY-PNKQLCIVTCGDDKLIRVWD-LSGRK---LFQFEGHEAPVYSV 503 (1130)
Q Consensus 431 ~~i~vwd~~~~~~--~~~~~~~~~h~~~V~~i~~s~-d~~~l~l~s~s~d~~v~iwd-~~~~~---~~~~~~h~~~v~~~ 503 (1130)
|.|..+|+..+.. ...... --|...|+++.... +++ +|++.+.+|.|++|| .--++ +..+.||-..-.-+
T Consensus 274 geI~~iDLR~rnqG~~~~a~r-lyh~Ssvtslq~Lq~s~q--~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l 350 (425)
T KOG2695|consen 274 GEIFVIDLRCRNQGNGWCAQR-LYHDSSVTSLQILQFSQQ--KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYL 350 (425)
T ss_pred CcEEEEEeeecccCCCcceEE-EEcCcchhhhhhhccccc--eEeeccCcCceeEeeehhhhcccceeeeeccccccccc
Confidence 9999999987522 111222 34899999998887 566 789999999999999 44444 88999998877777
Q ss_pred eecccCCccEEEEEecCCcEEEEEccCCcceeeecCC
Q 001184 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP 540 (1130)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 540 (1130)
-++-.+....++++++|-..|+|.++.+....++...
T Consensus 351 ~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 351 PAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred ccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 6776777789999999999999999988777665543
No 324
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.35 E-value=0.00022 Score=74.77 Aligned_cols=137 Identities=9% Similarity=0.053 Sum_probs=87.8
Q ss_pred CcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeee--c----CCCCcEEEEeeCCCCceeEEEecccC---c--
Q 001184 521 GKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGT--S----KEGDSHLVEWNESEGALKRTYIGFRK---K-- 589 (1130)
Q Consensus 521 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--~----~~~~~~i~~wd~~~~~~~~~~~~~~~---~-- 589 (1130)
+++.++|.++++..-.+.. +..-.+..+||++.++++.. + ++..-.|.+||..+-.....+.-... .
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 3677777776655443332 22334678999999987653 1 11244688999999887765543221 1
Q ss_pred -eeEEEEEcCCCCEEEEE--eCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 590 -SAGVVQFDTTRNRILAA--GEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 590 -~v~~~~~~~~~~~l~~~--~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
.....+++.++++++.. +-...|.|-|+..++.+..+...+ +..+.-+. ..-+.+.+.||.+.-..+...
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG----C~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~ 167 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG----CWLIYPSG-NRGFSMLCGDGSLLTVTLDAD 167 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS----EEEEEEEE-TTEEEEEETTSCEEEEEETST
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC----EEEEEecC-CCceEEEecCCceEEEEECCC
Confidence 12236788999988774 445679999999999988887654 22222222 245778889999998888743
No 325
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.35 E-value=0.00015 Score=82.18 Aligned_cols=103 Identities=18% Similarity=0.158 Sum_probs=74.0
Q ss_pred CCceeEEEEecCCCEEEEEe--CCeEEEEECCCcee------------EEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCc
Q 001184 833 EDVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKV------------MTTFMSPPPASTFLAFHPQDNNIIAIGMEDST 898 (1130)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~------------~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~ 898 (1130)
......+++||||+++++++ +.+|.|.|+.+.+. ..+.+. .......+|.+ +|....+-.-|..
T Consensus 320 GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg-~G~aytslf~dsq 397 (635)
T PRK02888 320 PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDG-RGNAYTTLFLDSQ 397 (635)
T ss_pred CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECC-CCCEEEeEeecce
Confidence 45667899999999999887 78999999987553 333332 23345678888 6788888899999
Q ss_pred EEEEEeec----------CeEEEEEecCCCCeeE-----EEEccCCCeEEEEeC
Q 001184 899 IQIYNVRV----------DEVKTKLKGHQKHITG-----LAFSTNLNILVSSGS 937 (1130)
Q Consensus 899 v~iwd~~~----------~~~~~~l~~h~~~V~~-----l~~s~dg~~L~s~s~ 937 (1130)
|..|++.+ ...+.++.-|-.+..- =.-.|||++|++...
T Consensus 398 v~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 398 IVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNK 451 (635)
T ss_pred eEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccc
Confidence 99999986 3556666555443221 123689999998754
No 326
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.33 E-value=1.4e-06 Score=87.91 Aligned_cols=165 Identities=13% Similarity=0.147 Sum_probs=123.4
Q ss_pred eEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCC----cc
Q 001184 458 NDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNV----GS 533 (1130)
Q Consensus 458 ~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~----~~ 533 (1130)
+.++|+-+-.. +-++.+.+..|-+-|..+.....|. ..+.|.++.|+... ++++.|+.+|.|..+|++.. ..
T Consensus 215 ~~CawSlni~g-yhfs~G~sqqv~L~nvetg~~qsf~-sksDVfAlQf~~s~--nLv~~GcRngeI~~iDLR~rnqG~~~ 290 (425)
T KOG2695|consen 215 WSCAWSLNIMG-YHFSVGLSQQVLLTNVETGHQQSFQ-SKSDVFALQFAGSD--NLVFNGCRNGEIFVIDLRCRNQGNGW 290 (425)
T ss_pred hhhhhhhccce-eeecccccceeEEEEeecccccccc-cchhHHHHHhcccC--CeeEecccCCcEEEEEeeecccCCCc
Confidence 34466654433 2366677788888895554555555 67788888886544 69999999999999999876 23
Q ss_pred eeeecCCCccEEEEEEec-CCCeEEEeeecCCCCcEEEEeeCCCCce---eEEEecccCcee-EEEEEcCCCCEEEEEeC
Q 001184 534 RVDYDAPGLWCTTMLYSA-DGSRLFSCGTSKEGDSHLVEWNESEGAL---KRTYIGFRKKSA-GVVQFDTTRNRILAAGE 608 (1130)
Q Consensus 534 ~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~~~~~~---~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~ 608 (1130)
....-.|+..|+++..-. ++++|.+.+. +|+|.+||.+--++ ++.+.||.+... .-+.+.+....+++++.
T Consensus 291 ~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M----~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~Gd 366 (425)
T KOG2695|consen 291 CAQRLYHDSSVTSLQILQFSQQKLMASDM----TGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGD 366 (425)
T ss_pred ceEEEEcCcchhhhhhhccccceEeeccC----cCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccC
Confidence 334445777788888776 7777777665 89999999987666 899999866322 22456677789999999
Q ss_pred CCcEEEEeCCCCceeEEEeccC
Q 001184 609 DNQIKFWDMDNVNMLTSTEAEG 630 (1130)
Q Consensus 609 dg~i~vwd~~~~~~~~~~~~~~ 630 (1130)
|-..|||.++.|.++.+++...
T Consensus 367 DcytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 367 DCYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred eeEEEEEecccCceeeccCCCC
Confidence 9999999999999999887654
No 327
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=1.7e-05 Score=82.18 Aligned_cols=247 Identities=14% Similarity=0.098 Sum_probs=146.0
Q ss_pred CCCCCceeEEEEecCCC-EEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecC
Q 001184 830 ENAEDVVPCVALSKNDS-YVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVD 907 (1130)
Q Consensus 830 ~~~~~~i~~l~~s~dg~-~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~ 907 (1130)
.++...|..++|||..+ ++..++ +.+|.|.|+++..+...+..+ ..+.+++|.-++..++..|..+|.|.|||+...
T Consensus 190 p~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 190 PGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP 268 (463)
T ss_pred cccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCC
Confidence 36788999999999888 666677 889999999999999988877 789999999988899999999999999999854
Q ss_pred eE-EEEEec--CCCCeeEEE------EccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCc
Q 001184 908 EV-KTKLKG--HQKHITGLA------FSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQV 978 (1130)
Q Consensus 908 ~~-~~~l~~--h~~~V~~l~------~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~ 978 (1130)
+- +..+.+ ...+|..++ ..+-|.+|+.+..+ +..|++.....-... ...-..++...++++.+-.+
T Consensus 269 ~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~---vlele~pG~cismqy~~~sn 343 (463)
T KOG1645|consen 269 EGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPC---VLELEPPGICISMQYHGVSN 343 (463)
T ss_pred CchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCc---ccccCCCcceeeeeecCccc
Confidence 21 222221 122333333 33446666666655 678887653321111 11112224555666666545
Q ss_pred EEEEEc-C-------CcEEE-EECCCceeeeeeecCC-CC----CCCeEEEEECCCCCEEEEEe-CCCcEEEEeCCCccc
Q 001184 979 RLLVNH-E-------TQLAI-YDGSKMECIRQWVPQD-VL----SSPISSAAYSCNSQLIYATF-TDGSIGVFDADSLRL 1043 (1130)
Q Consensus 979 ~l~~~~-d-------~~i~v-~d~~~~~~~~~~~~~~-~~----~~~v~~v~~s~dg~~l~t~~-~Dg~i~vwd~~~~~~ 1043 (1130)
.++++. . ..+-+ -|-.+|..+..-.... +- -..-.++.=.+|..+|+.-+ +-+.+.+||..+++.
T Consensus 344 h~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~ev 423 (463)
T KOG1645|consen 344 HLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEV 423 (463)
T ss_pred eEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhhe
Confidence 555431 1 01111 1222333332221111 00 00111222245666555444 557899999999999
Q ss_pred ccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 001184 1044 RCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSE 1094 (1130)
Q Consensus 1044 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~~ 1094 (1130)
..++.... -+.+++....++.-++..-.|..++|++.+.
T Consensus 424 vQ~l~~~e------------pv~Dicp~~~n~~syLa~LTd~~v~Iyk~es 462 (463)
T KOG1645|consen 424 VQTLALSE------------PVLDICPNDTNGSSYLALLTDDRVHIYKNES 462 (463)
T ss_pred eeecccCc------------ceeecceeecCCcchhhheecceEEEEecCC
Confidence 88876332 2334444333333344444466688887643
No 328
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.33 E-value=0.00016 Score=85.78 Aligned_cols=279 Identities=13% Similarity=0.174 Sum_probs=159.0
Q ss_pred CCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEE
Q 001184 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGV 426 (1130)
Q Consensus 347 ~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las 426 (1130)
.+.|.++.|.-++.. ++.+..+|.|.+-|.++.... +...-...|.+++||||++.+|.
T Consensus 68 d~~i~s~~fl~d~~~-i~v~~~~G~iilvd~et~~~e--------------------ivg~vd~GI~aaswS~Dee~l~l 126 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNS-ICVITALGDIILVDPETLELE--------------------IVGNVDNGISAASWSPDEELLAL 126 (1265)
T ss_pred CcceEEEEEecccce-EEEEecCCcEEEEccccccee--------------------eeeeccCceEEEeecCCCcEEEE
Confidence 369999999999885 777888999999998876654 23445678999999999999999
Q ss_pred EeCCCeEEEEEecCCccceeeeeeec---CCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEE
Q 001184 427 AFTKHLIHLYTYQGSNDLCQSLEIDA---HVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYS 502 (1130)
Q Consensus 427 ~~~d~~i~vwd~~~~~~~~~~~~~~~---h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~ 502 (1130)
.+..+++.+-+- +-..+... .+.. ..+..-.+-|-....+ +-|+ .|...--+ ...............=++
T Consensus 127 iT~~~tll~mT~-~f~~i~E~-~L~~d~~~~sk~v~VGwGrkeTq---frgs-~gr~~~~~~~~~ek~~~~~~~~~~~~~ 200 (1265)
T KOG1920|consen 127 ITGRQTLLFMTK-DFEPIAEK-PLDADDERKSKFVNVGWGRKETQ---FRGS-EGRQAARQKIEKEKALEQIEQDDHKTS 200 (1265)
T ss_pred EeCCcEEEEEec-cccchhcc-ccccccccccccceeccccccee---eecc-hhhhcccccccccccccchhhccCCce
Confidence 988887766442 11111100 0100 0111222333222211 1111 01111111 000000000011122234
Q ss_pred EeecccCCccEEEEE-----ecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCC
Q 001184 503 VCPHQKENIHFIFST-----AVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG 577 (1130)
Q Consensus 503 ~~~~~~~~~~~l~s~-----s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1130)
++| .+||+++++. ...+.|++||-+ +.....-.....--.+++|-|.|..+++.....+ ++.|.++.. +|
T Consensus 201 IsW--RgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~s-d~~IvffEr-NG 275 (1265)
T KOG1920|consen 201 ISW--RGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTS-DSDIVFFER-NG 275 (1265)
T ss_pred EEE--ccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCC-CCcEEEEec-CC
Confidence 666 5777888873 223789999977 2222222222333468999999999998875443 557888874 34
Q ss_pred ceeEEEe--cc-cCceeEEEEEcCCCCEEEE---EeCCCcEEEEeCCCCcee--EEEeccCCCCCcceEEEcCCC-CEEE
Q 001184 578 ALKRTYI--GF-RKKSAGVVQFDTTRNRILA---AGEDNQIKFWDMDNVNML--TSTEAEGGLPSLPRLRFNKEG-NLLV 648 (1130)
Q Consensus 578 ~~~~~~~--~~-~~~~v~~~~~~~~~~~l~~---~~~dg~i~vwd~~~~~~~--~~~~~~~~~~~i~~v~~s~~~-~~l~ 648 (1130)
-.-..|. -. ....+..++|+.++..|++ ......|++|-..+.... +.+..... .-+.|+|.. ..+.
T Consensus 276 L~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~----~~~~W~p~~~~~L~ 351 (1265)
T KOG1920|consen 276 LRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQK----ALLMWDPVTEKTLH 351 (1265)
T ss_pred ccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccc----ccccccCCCceeEE
Confidence 3322221 11 1223788999999998888 455556999998876533 33333322 227888833 3344
Q ss_pred EEeCCCcEEEEEc
Q 001184 649 VTTADQGIKILAN 661 (1130)
Q Consensus 649 ~~~~dg~i~iw~~ 661 (1130)
+...+|...++++
T Consensus 352 v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 352 VLRESGQRLVRDF 364 (1265)
T ss_pred EEecCCcEEEEEE
Confidence 4446777666664
No 329
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.32 E-value=0.00014 Score=81.43 Aligned_cols=288 Identities=14% Similarity=0.093 Sum_probs=168.0
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 425 (1130)
|...|.--+++-.+++ ++.|+.-|.+++|+-.+++.... ...+-.+.+..+..|++..++|
T Consensus 32 ~~~~v~lTc~dst~~~-l~~GsS~G~lyl~~R~~~~~~~~------------------~~~~~~~~~~~~~vs~~e~lvA 92 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEY-LAMGSSAGSVYLYNRHTGEMRKL------------------KNEGATGITCVRSVSSVEYLVA 92 (726)
T ss_pred CcceEEEEEeecCCce-EEEecccceEEEEecCchhhhcc------------------cccCccceEEEEEecchhHhhh
Confidence 5567777778888885 89999999999999998876542 1223456677888999999999
Q ss_pred EEeCCCeEEEEEecCCccceeeee--e-ecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCC-----eeeEecCCC
Q 001184 426 VAFTKHLIHLYTYQGSNDLCQSLE--I-DAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGR-----KLFQFEGHE 497 (1130)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~--~-~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~-----~~~~~~~h~ 497 (1130)
.|+..|.|.++-+..+........ . ..|...|++++|++|+. .+++|...|.|.+-..+.. ..+.+....
T Consensus 93 agt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~d 170 (726)
T KOG3621|consen 93 AGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDSRQAFLSKSQEILSED 170 (726)
T ss_pred hhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEechhhhhccccceeeccC
Confidence 999999999999877443222111 1 23778999999999999 7999999999988774331 123334456
Q ss_pred cCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCc--cEEEEEEecC----CCeEEEeeecCCCCcEEEE
Q 001184 498 APVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGL--WCTTMLYSAD----GSRLFSCGTSKEGDSHLVE 571 (1130)
Q Consensus 498 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~--~v~~~~~s~~----~~~l~~~~~~~~~~~~i~~ 571 (1130)
+.|..+.+. ++.+|++.. -.. .+++.+...-...-..... .-...+|-|. ..-.+.|+ ....++
T Consensus 171 s~IVQlD~~---q~~LLVStl-~r~-~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~Iyca-----RPG~Rl 240 (726)
T KOG3621|consen 171 SEIVQLDYL---QSYLLVSTL-TRC-ILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCA-----RPGLRL 240 (726)
T ss_pred cceEEeecc---cceehHhhh-hhh-heeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEe-----cCCCce
Confidence 777777653 223333333 222 2344443221111111111 1233444443 33344443 334566
Q ss_pred eeCC-CCceeEEEecc-------------cC---c-------eeEEEE----EcCCCCEEEEEeCCCcEEEEeCCCCcee
Q 001184 572 WNES-EGALKRTYIGF-------------RK---K-------SAGVVQ----FDTTRNRILAAGEDNQIKFWDMDNVNML 623 (1130)
Q Consensus 572 wd~~-~~~~~~~~~~~-------------~~---~-------~v~~~~----~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 623 (1130)
|... .|..+++..-. .. . .-..+. +.-.+.++++-++-| |+|+|.++.+.+
T Consensus 241 Wead~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~~vLa~te~G-iyv~d~~~~~v~ 319 (726)
T KOG3621|consen 241 WEADFAGEVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSDRVLAWTEVG-IYVFDSNNSQVY 319 (726)
T ss_pred EEeecceeEEEeeehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEeecceEEEeecce-EEEEEeccceEE
Confidence 6543 24433332100 00 0 000000 111123455555544 899998876655
Q ss_pred EEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhh
Q 001184 624 TSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRA 670 (1130)
Q Consensus 624 ~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 670 (1130)
.-..... .|..++. .++-|++-..|+.+++..+.+..+.+..
T Consensus 320 l~se~~~---DI~dVs~--~~neiFvL~~d~~l~~~sv~s~qr~l~~ 361 (726)
T KOG3621|consen 320 LWSEGGH---DILDVSH--CGNEIFVLNLDRGLKVESVASRQRKLES 361 (726)
T ss_pred EeecCCC---ceeEEee--cCceEEEEecCCceeEEEeehhHHHHHH
Confidence 4432222 4555544 4666778888888888888776554443
No 330
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.31 E-value=3.9e-05 Score=86.81 Aligned_cols=244 Identities=11% Similarity=0.041 Sum_probs=145.1
Q ss_pred cCCCEEEEEe--CCeEEEEECCCceeEEEEeCCC-CCeEEEE-------------------EeCCCCcEE-EEEeCCCcE
Q 001184 843 KNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSPP-PASTFLA-------------------FHPQDNNII-AIGMEDSTI 899 (1130)
Q Consensus 843 ~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~-------------------~sp~~~~~l-asg~~dg~v 899 (1130)
-||+++.+-. ...|-..++...++-+.+..+. ..+..++ ++| +++.+ .+.-..+.+
T Consensus 139 ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~Plpn-DGk~l~~~~ey~~~v 217 (635)
T PRK02888 139 YDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPN-DGKDLDDPKKYRSLF 217 (635)
T ss_pred cceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCC-CCCEeecccceeEEE
Confidence 4889998877 4667777777666655444211 1222222 334 44433 223344667
Q ss_pred EEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCC----cEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcC
Q 001184 900 QIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDA----QLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHS 975 (1130)
Q Consensus 900 ~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 975 (1130)
.+.|.++.+...++..-. ....++++|||+++++.+.+. ++..-+... ......+... ..-++.+
T Consensus 218 SvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e--~d~~vvfni~--------~iea~vk 286 (635)
T PRK02888 218 TAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAE--RDWVVVFNIA--------RIEEAVK 286 (635)
T ss_pred EEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeecccc--CceEEEEchH--------HHHHhhh
Confidence 788888777766655322 446789999999998886322 222222211 1000000000 0013456
Q ss_pred CCcEEEEEcCCcEEEEECCC----c-eeeeeeecCCCCCCCeEEEEECCCCCEEEEEe-CCCcEEEEeCCCccccc--cc
Q 001184 976 DQVRLLVNHETQLAIYDGSK----M-ECIRQWVPQDVLSSPISSAAYSCNSQLIYATF-TDGSIGVFDADSLRLRC--RI 1047 (1130)
Q Consensus 976 d~~~l~~~~d~~i~v~d~~~----~-~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~-~Dg~i~vwd~~~~~~~~--~~ 1047 (1130)
+|++..+ .+++|.+.|..+ + +.+..+.. ......+.+||||+++++++ .+.+|.|.|+.+.+... .+
T Consensus 287 dGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIPV----GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~ 361 (635)
T PRK02888 287 AGKFKTI-GGSKVPVVDGRKAANAGSALTRYVPV----PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKI 361 (635)
T ss_pred CCCEEEE-CCCEEEEEECCccccCCcceEEEEEC----CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccC
Confidence 7887766 467899999998 3 44454444 35778999999999888777 58999999999866421 11
Q ss_pred CCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC------CccCCcccccCC
Q 001184 1048 APSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSE------TERKWGVAVPVD 1106 (1130)
Q Consensus 1048 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~~------~~~~w~~~~p~~ 1106 (1130)
.....+... ..-...++..+|.+ +++..+|-..|..|..|++.+ ++..|.+..-++
T Consensus 362 ~~~~~vvae--vevGlGPLHTaFDg-~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~d 423 (635)
T PRK02888 362 KPRDAVVAE--PELGLGPLHTAFDG-RGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLD 423 (635)
T ss_pred CccceEEEe--eccCCCcceEEECC-CCCEEEeEeecceeEEEehHHHHHHhccccCCcceeccc
Confidence 111100000 00123456688877 478899999999999999986 444465554443
No 331
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.29 E-value=0.02 Score=67.33 Aligned_cols=637 Identities=12% Similarity=0.081 Sum_probs=299.7
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCC----
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD---- 420 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd---- 420 (1130)
+...-..|+.+-++| +|++||.-|.=.+-.+.+......+ .. ....+ ..-++|..++.-.+
T Consensus 304 ge~siassi~~L~ng--~lFvGS~~gdSqLi~L~~e~d~gsy-~~-----------ilet~-~NLgPI~Dm~Vvd~d~q~ 368 (1096)
T KOG1897|consen 304 GETSIASSINYLDNG--VLFVGSRFGDSQLIKLNTEPDVGSY-VV-----------ILETF-VNLGPIVDMCVVDLDRQG 368 (1096)
T ss_pred CCcchhhhhhcccCc--eEEEeccCCceeeEEccccCCCCch-hh-----------hhhhc-ccccceeeEEEEeccccC
Confidence 344445666677777 5888988776566665543222100 00 00001 12246666665432
Q ss_pred CCEEEEEe---CCCeEEEEEecCCccceeeeeeecCCCCeeEEE--EecCCCceEEEEEcCCCcEEEEecCCCeeeE-ec
Q 001184 421 GNFIGVAF---TKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLA--FSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQ-FE 494 (1130)
Q Consensus 421 g~~las~~---~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~--~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~-~~ 494 (1130)
+..+++|+ .||++++..-.-+-.......+.| -..++.+. +.++-...++++-. +.-++...+++...+ ..
T Consensus 369 q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~ylvlsf~--~eTrvl~i~~e~ee~~~~ 445 (1096)
T KOG1897|consen 369 QGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDNYLVLSFI--SETRVLNISEEVEETEDP 445 (1096)
T ss_pred CceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCcEEEEEec--cceEEEEEccceEEeccc
Confidence 23455553 478898876543322222234555 34577777 44433321333332 223444434432111 11
Q ss_pred CCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeC
Q 001184 495 GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNE 574 (1130)
Q Consensus 495 ~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1130)
+.......+..+.- +++.|+-.. ...||+++-. .....+..... ++..+.+.+...++.++. ++.+...++
T Consensus 446 gf~~~~~Tif~S~i-~g~~lvQvT-s~~iRl~ss~--~~~~~W~~p~~-~ti~~~~~n~sqVvvA~~----~~~l~y~~i 516 (1096)
T KOG1897|consen 446 GFSTDEQTIFCSTI-NGNQLVQVT-SNSIRLVSSA--GLRSEWRPPGK-ITIGVVSANASQVVVAGG----GLALFYLEI 516 (1096)
T ss_pred cccccCceEEEEcc-CCceEEEEe-cccEEEEcch--hhhhcccCCCc-eEEEEEeecceEEEEecC----ccEEEEEEe
Confidence 22222222222211 112222211 2345555433 22223333333 333333444445555542 455666666
Q ss_pred CCCceeEEEecccCceeEEEEEcCCC---C---EEEEEeCCCcEEEEe-CCCCceeEEEeccC--CCCCcceEEEcCCCC
Q 001184 575 SEGALKRTYIGFRKKSAGVVQFDTTR---N---RILAAGEDNQIKFWD-MDNVNMLTSTEAEG--GLPSLPRLRFNKEGN 645 (1130)
Q Consensus 575 ~~~~~~~~~~~~~~~~v~~~~~~~~~---~---~l~~~~~dg~i~vwd-~~~~~~~~~~~~~~--~~~~i~~v~~s~~~~ 645 (1130)
..+.+.......-...+.|+.++|-+ + +++.|..+..+.+.- ......+....... -...|.-..+-.|..
T Consensus 517 ~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~ 596 (1096)
T KOG1897|consen 517 EDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIH 596 (1096)
T ss_pred eccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccce
Confidence 65554333333334478899888753 2 677787766555443 33343333322221 112344455556688
Q ss_pred EEEEEeCCCcEEEEEcCCCchhhhhhcccccccc-cccccccccccceeeccc--cccccccccC-CCCCC-----CCcc
Q 001184 646 LLVVTTADQGIKILANADGLRALRAIETRAYETS-RASTEMKVPGSAVVTTIT--PVLSKAERVD-RSSPA-----RPST 716 (1130)
Q Consensus 646 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s--p~~~~~~~~~-~~~~~-----~~~~ 716 (1130)
+|.++..||.+.-+.++...-.....+....... .....+.......+.+.+ |.......++ ...|. ....
T Consensus 597 yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c 676 (1096)
T KOG1897|consen 597 YLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMC 676 (1096)
T ss_pred EEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhc
Confidence 9999999999887766443222221111000000 000001111111111111 1100000000 00000 0000
Q ss_pred cccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeec
Q 001184 717 ILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKW 796 (1130)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~ 796 (1130)
.+.. ..-+..++.+ ..+.+++..++.... ....++|. ......+++.+....+.+.+.......
T Consensus 677 ~f~s-----~a~~d~l~~~-~~~~l~i~tid~iqk---l~irtvpl----~~~prrI~~q~~sl~~~v~s~r~e~~~--- 740 (1096)
T KOG1897|consen 677 PFNS-----DAYPDSLASA-NGGALTIGTIDEIQK---LHIRTVPL----GESPRRICYQESSLTFGVLSNRIESSA--- 740 (1096)
T ss_pred cccc-----ccCCceEEEe-cCCceEEEEecchhh---cceeeecC----CCChhheEecccceEEEEEecccccch---
Confidence 0100 0001112222 224555555554332 11112232 233455666664443333333211110
Q ss_pred CCCCCCCCcccccccccccccCCCCcceeccCCC--CCCCceeEEEEecC-CCEEEEEe-----------CCeEEEEECC
Q 001184 797 NRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPE--NAEDVVPCVALSKN-DSYVMSAG-----------GGKVSLFNMM 862 (1130)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~--~~~~~i~~l~~s~d-g~~la~~~-----------dg~i~iwd~~ 862 (1130)
.. .+.......++++|.++-+.+...-.. .....+.++.|..| +.++++|. .|.|.+|...
T Consensus 741 ----~~-~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~ 815 (1096)
T KOG1897|consen 741 ----EY-YGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFE 815 (1096)
T ss_pred ----hh-cCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEe
Confidence 00 011111123456676666544422111 11223444557777 77887763 2778888877
Q ss_pred CceeEEEEeCC--CCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCc
Q 001184 863 NFKVMTTFMSP--PPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQ 940 (1130)
Q Consensus 863 ~~~~~~~~~~~--~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~ 940 (1130)
.+..+.....+ .+.+.++..- ++++|| +-+..|++|+..+.+.++.-..|..++..+...-.|..++.|+--+.
T Consensus 816 e~~~L~~v~e~~v~Gav~aL~~f--ngkllA--~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~S 891 (1096)
T KOG1897|consen 816 ELNSLELVAETVVKGAVYALVEF--NGKLLA--GINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRS 891 (1096)
T ss_pred cCCceeeeeeeeeccceeehhhh--CCeEEE--ecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccce
Confidence 64443333222 3445555433 567775 34678999999999777777788999999999999999999998888
Q ss_pred EEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCc----------eeeeeeecC-----
Q 001184 941 LIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKM----------ECIRQWVPQ----- 1005 (1130)
Q Consensus 941 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~----------~~~~~~~~~----- 1005 (1130)
+.+--.+..+. ........-.+...+++.+-.+..++.+-.++.+.+....+. +....|..+
T Consensus 892 itll~y~~~eg---~f~evArD~~p~Wmtaveil~~d~ylgae~~gNlf~v~~d~~~~td~eR~~l~~~~~~hlGelvn~ 968 (1096)
T KOG1897|consen 892 ITLLQYKGDEG---NFEEVARDYNPNWMTAVEILDDDTYLGAENSGNLFTVRKDSDATTDEERQILEEVGKFHLGELVNK 968 (1096)
T ss_pred EEEEEEeccCC---ceEEeehhhCccceeeEEEecCceEEeecccccEEEEEecCCCCchhhhhcccceeeEEeccceee
Confidence 77665554321 122233333446778888888888887766666665543321 011111111
Q ss_pred CCCCCCeEE--EEECCCCCEEEEEeCCCcEEEE
Q 001184 1006 DVLSSPISS--AAYSCNSQLIYATFTDGSIGVF 1036 (1130)
Q Consensus 1006 ~~~~~~v~~--v~~s~dg~~l~t~~~Dg~i~vw 1036 (1130)
..|..-|.. -..+|-+.-+..|..+|.|-+-
T Consensus 969 f~hg~lv~~~~~s~~~~~~~vlfgTv~GsIG~i 1001 (1096)
T KOG1897|consen 969 FRHGSLVMQLGDSMIPLEPKVLFGTVNGSIGII 1001 (1096)
T ss_pred eeecceEeeccccccCCCCcEEEEEccceEEEE
Confidence 111223333 1334555567778889988766
No 332
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.26 E-value=0.00013 Score=81.51 Aligned_cols=298 Identities=13% Similarity=0.112 Sum_probs=158.4
Q ss_pred cCCCCEEEEE---------eCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchh
Q 001184 597 DTTRNRILAA---------GEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRA 667 (1130)
Q Consensus 597 ~~~~~~l~~~---------~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 667 (1130)
|||+++++.. +..+.+.++|+.+++....... ...+....|||+|+.++... ++.|.+++..++...
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~---~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~ 76 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP---PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQET 76 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E---ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC---ccccccceeecCCCeeEEEe-cCceEEEECCCCCeE
Confidence 5677766663 2346799999999766554433 23688999999999998885 578999887666221
Q ss_pred hhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeec
Q 001184 668 LRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELT 747 (1130)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~ 747 (1130)
.-+..+ ...+. .|- --|-..
T Consensus 77 ~lT~dg-~~~i~------------------------------------------------------nG~-----~dwvye 96 (353)
T PF00930_consen 77 QLTTDG-EPGIY------------------------------------------------------NGV-----PDWVYE 96 (353)
T ss_dssp ESES---TTTEE------------------------------------------------------ESB-------HHHH
T ss_pred Eecccc-ceeEE------------------------------------------------------cCc-----cceecc
Confidence 111111 00000 000 001110
Q ss_pred cccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeC-CeEEeeecC---CCCC----------CCCccccccccc
Q 001184 748 EIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSN-GVQKLWKWN---RTEQ----------NPSGKATAAVAP 813 (1130)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~i~iw~~~---~~~~----------~~~~~~~~~~~~ 813 (1130)
+. --+.-..+.|||||++|+...-| ..+..+.+. .... ...|.......+
T Consensus 97 EE----------------v~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l 160 (353)
T PF00930_consen 97 EE----------------VFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSL 160 (353)
T ss_dssp HH----------------TSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEE
T ss_pred cc----------------ccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEE
Confidence 00 01122457788888887776653 333333222 1110 112333344456
Q ss_pred ccccCCCCcceeccCC---CCCCCceeEEEEecCCCEEE-EEe--C-C--eEEEEECCCceeEEEEeC-CCC---CeEEE
Q 001184 814 QHWQPSNGLLMTNDVP---ENAEDVVPCVALSKNDSYVM-SAG--G-G--KVSLFNMMNFKVMTTFMS-PPP---ASTFL 880 (1130)
Q Consensus 814 ~~w~~~~~~~~~~~~~---~~~~~~i~~l~~s~dg~~la-~~~--d-g--~i~iwd~~~~~~~~~~~~-~~~---~i~~l 880 (1130)
.++++.+++......+ .....-+..+.|+++++.|+ .-. + . .+.+.|..++.+...... ... .....
T Consensus 161 ~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~ 240 (353)
T PF00930_consen 161 FVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPP 240 (353)
T ss_dssp EEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEE
T ss_pred EEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeeccc
Confidence 6788888876543333 23466788999999999444 333 2 2 377778877665444332 122 23355
Q ss_pred EEe-CCCCcEEEEEeCCCcEEEEEee--cCeEEEEEecCCCCeeE-EEEccCCCeEE-EEeCC--C--cEEEEECC-CCc
Q 001184 881 AFH-PQDNNIIAIGMEDSTIQIYNVR--VDEVKTKLKGHQKHITG-LAFSTNLNILV-SSGSD--A--QLIFWNTD-TWE 950 (1130)
Q Consensus 881 ~~s-p~~~~~lasg~~dg~v~iwd~~--~~~~~~~l~~h~~~V~~-l~~s~dg~~L~-s~s~D--g--~i~vwd~~-~~~ 950 (1130)
.|. +++..+|.....||.-+||-+. ++. ...+....-.|+. +.++++++.+. ++..+ + .|..-+++ .++
T Consensus 241 ~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~ 319 (353)
T PF00930_consen 241 HFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGE 319 (353)
T ss_dssp EE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTE
T ss_pred ccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCC
Confidence 665 6577777777788876666554 444 4466655666755 67888877665 44442 2 34444555 222
Q ss_pred ccceeeEeccCCCCCCCeEEEEEcCCCcEEEE
Q 001184 951 KRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV 982 (1130)
Q Consensus 951 ~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 982 (1130)
. ..+... . .....+.|||+|++++.
T Consensus 320 ~-----~~LT~~-~-~~~~~~~~Spdg~y~v~ 344 (353)
T PF00930_consen 320 P-----KCLTCE-D-GDHYSASFSPDGKYYVD 344 (353)
T ss_dssp E-----EESSTT-S-STTEEEEE-TTSSEEEE
T ss_pred e-----EeccCC-C-CCceEEEECCCCCEEEE
Confidence 1 111111 1 11168999999999886
No 333
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=0.00032 Score=80.17 Aligned_cols=203 Identities=17% Similarity=0.184 Sum_probs=137.1
Q ss_pred EEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCC-eEEEEEeCCCCcEEEEEeCCC-----cEEEEEeecC----
Q 001184 839 VALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPA-STFLAFHPQDNNIIAIGMEDS-----TIQIYNVRVD---- 907 (1130)
Q Consensus 839 l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~-i~~l~~sp~~~~~lasg~~dg-----~v~iwd~~~~---- 907 (1130)
-++++.+..++.|+ +|.|.+.+- +.+.+..++.+... |+.+.... +..+|++-++|+ .|+||+++.-
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred eEEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 35678888899988 898888875 33455667766666 55555544 556777777665 4899998732
Q ss_pred --eEEE--EEec-----CCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCc
Q 001184 908 --EVKT--KLKG-----HQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQV 978 (1130)
Q Consensus 908 --~~~~--~l~~-----h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~ 978 (1130)
.++. .+.. ...++.+++.+.+-+.+|+|-.||.|..+.-+--+.+.... ...+....+|+.+++-.|+.
T Consensus 107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~--~~~~~~~~pITgL~~~~d~~ 184 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQ--DYSHRGKEPITGLALRSDGK 184 (933)
T ss_pred CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccce--eeeccCCCCceeeEEecCCc
Confidence 2331 2222 35678899999999999999999999998655433332222 22223347899999999998
Q ss_pred E-EEEEcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccC
Q 001184 979 R-LLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIA 1048 (1130)
Q Consensus 979 ~-l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~ 1048 (1130)
- +.+.....|.+|.+.. +. ........|+.++.|..|++-..-+++++ +..+.+|+.........+.
T Consensus 185 s~lFv~Tt~~V~~y~l~g-r~-p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 185 SVLFVATTEQVMLYSLSG-RT-PSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred eeEEEEecceeEEEEecC-CC-cceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeec
Confidence 7 5557788899999984 33 22222344478899999987655355555 4679999988555444443
No 334
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.13 E-value=0.0077 Score=64.83 Aligned_cols=279 Identities=14% Similarity=0.081 Sum_probs=137.2
Q ss_pred EEecCCCeEEEEEeCcCe--EEEEeCCCCceeecccceeeeccccccceeeeeecCC-CccEEEEEEcCCCCEEEEEeCC
Q 001184 354 DFHPFHHTLLVVGCGDGE--ITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDS-SISVSRVAWSPDGNFIGVAFTK 430 (1130)
Q Consensus 354 ~fspdg~~llasg~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~v~~spdg~~las~~~d 430 (1130)
+|.+||++||+.+..||. +.+.|+.+++... +... ........++|+++.++.....
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q--------------------LTdg~g~~~~g~~~s~~~~~~~Yv~~~ 101 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ--------------------LTDGPGDNTFGGFLSPDDRALYYVKNG 101 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-----------------------SS-B-TTT-EE-TTSSEEEEEETT
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEE--------------------CccCCCCCccceEEecCCCeEEEEECC
Confidence 578999988988877764 6677888887653 2222 1223356778999988877666
Q ss_pred CeEEEEEecCCccceeeeeeecCCCCeeEEEEe--cCCCceEEEEEc---CC-------------------CcEEEEecC
Q 001184 431 HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFS--YPNKQLCIVTCG---DD-------------------KLIRVWDLS 486 (1130)
Q Consensus 431 ~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s--~d~~~l~l~s~s---~d-------------------~~v~iwd~~ 486 (1130)
..|+--|+++.+.. . .+......+-...|. .|+. .++..- .| +.|.--|..
T Consensus 102 ~~l~~vdL~T~e~~-~--vy~~p~~~~g~gt~v~n~d~t--~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~ 176 (386)
T PF14583_consen 102 RSLRRVDLDTLEER-V--VYEVPDDWKGYGTWVANSDCT--KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLK 176 (386)
T ss_dssp TEEEEEETTT--EE-E--EEE--TTEEEEEEEEE-TTSS--EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETT
T ss_pred CeEEEEECCcCcEE-E--EEECCcccccccceeeCCCcc--EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECC
Confidence 78999999886632 2 234445556556664 3444 333221 11 123333422
Q ss_pred CCeeeEecCCCcCEEEEeecccCCccEEEEEec---CC-cEEEEEccCCccee-ee--cCCCccEEEEEEecCCCeEEEe
Q 001184 487 GRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAV---DG-KIKAWLYDNVGSRV-DY--DAPGLWCTTMLYSADGSRLFSC 559 (1130)
Q Consensus 487 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~---dg-~i~vwd~~~~~~~~-~~--~~~~~~v~~~~~s~~~~~l~~~ 559 (1130)
+.....+..-...+..+.|+|... .+|.-|-+ +. .-|||-+++..... .+ ......+..=-|.|||..+...
T Consensus 177 tG~~~~v~~~~~wlgH~~fsP~dp-~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~ 255 (386)
T PF14583_consen 177 TGERKVVFEDTDWLGHVQFSPTDP-TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYD 255 (386)
T ss_dssp T--EEEEEEESS-EEEEEEETTEE-EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEE
T ss_pred CCceeEEEecCccccCcccCCCCC-CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEE
Confidence 233333333455667777877543 34444422 22 13667665433322 11 1223456667799999988775
Q ss_pred ee-cCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCC----------------CcEEEEeCCCCce
Q 001184 560 GT-SKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGED----------------NQIKFWDMDNVNM 622 (1130)
Q Consensus 560 ~~-~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------------g~i~vwd~~~~~~ 622 (1130)
+. .+..+..|.-+|..+++........ ...-.-.++||++++.=+.| --|+++++..++.
T Consensus 256 ~~~~~~~~~~i~~~d~~t~~~~~~~~~p---~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~ 332 (386)
T PF14583_consen 256 SYTPGGQDFWIAGYDPDTGERRRLMEMP---WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRF 332 (386)
T ss_dssp EEETTT--EEEEEE-TTT--EEEEEEE----SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEE
T ss_pred eecCCCCceEEEeeCCCCCCceEEEeCC---ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCce
Confidence 54 2333667888899888665433321 23345567888877663332 2567788887765
Q ss_pred eEEEecc--------CCCCCcceEEEcCCCCEEEEEe-CCCcEEEEEc
Q 001184 623 LTSTEAE--------GGLPSLPRLRFNKEGNLLVVTT-ADQGIKILAN 661 (1130)
Q Consensus 623 ~~~~~~~--------~~~~~i~~v~~s~~~~~l~~~~-~dg~i~iw~~ 661 (1130)
....... .....-....|+|||++++..+ ..|...||-+
T Consensus 333 ~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 333 RKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp EEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred eeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 4322211 0011235689999999876655 4666666644
No 335
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.13 E-value=9.8e-06 Score=56.82 Aligned_cols=39 Identities=31% Similarity=0.528 Sum_probs=36.8
Q ss_pred ceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEE
Q 001184 864 FKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYN 903 (1130)
Q Consensus 864 ~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd 903 (1130)
++++.++.+|...|.+++|+| ++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 467899999999999999999 899999999999999997
No 336
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=0.00011 Score=83.07 Aligned_cols=189 Identities=17% Similarity=0.222 Sum_probs=129.0
Q ss_pred CCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccce
Q 001184 875 PASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKS 954 (1130)
Q Consensus 875 ~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~ 954 (1130)
..++|++++ +++++-|+.+|.|++++.+..- .+...|+.. ..+|.+++||+.||+|.|-.+.+.+....
T Consensus 40 D~is~~av~---~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 40 DAISCCAVH---DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hHHHHHHhh---cceeeeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 456777774 4799999999999999987443 333345443 55799999999999999999988665433
Q ss_pred eeEeccCCCCCCCeEEEEEcCC-----CcEEEEEcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeC
Q 001184 955 IAIQLPAGKLPVGETRVQFHSD-----QVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFT 1029 (1130)
Q Consensus 955 ~~~~~~~~~~~~~v~~~~~s~d-----~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~ 1029 (1130)
.... .++.+++++|| .+.++++....+.++.-.-..-......+ ...++|.++.|. |.++|=++.
T Consensus 109 ~df~-------rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~-~~eG~I~~i~W~--g~lIAWand 178 (846)
T KOG2066|consen 109 YDFK-------RPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLS-EGEGPIHSIKWR--GNLIAWAND 178 (846)
T ss_pred EecC-------CcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeee-cCccceEEEEec--CcEEEEecC
Confidence 3322 67889999998 44555554444777765422222222121 126899999996 778888775
Q ss_pred CCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 001184 1030 DGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPS 1093 (1130)
Q Consensus 1030 Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~ 1093 (1130)
+| |+|||..+++.+..+.+....+ ......-.+.|.+. ..|+.|=.| +|++..+.
T Consensus 179 ~G-v~vyd~~~~~~l~~i~~p~~~~-----R~e~fpphl~W~~~--~~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 179 DG-VKVYDTPTRQRLTNIPPPSQSV-----RPELFPPHLHWQDE--DRLVIGWGD-SVKICSIK 233 (846)
T ss_pred CC-cEEEeccccceeeccCCCCCCC-----CcccCCCceEecCC--CeEEEecCC-eEEEEEEe
Confidence 55 8999999999998887655221 12234445778764 566665544 48888887
No 337
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=0.00066 Score=77.73 Aligned_cols=201 Identities=13% Similarity=0.147 Sum_probs=129.8
Q ss_pred EEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCC-CEEEEEeCCC-
Q 001184 354 DFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDG-NFIGVAFTKH- 431 (1130)
Q Consensus 354 ~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~las~~~d~- 431 (1130)
+|++.+. .+|.|+.+|.|.+.+-. -... . -+..+...|...-|.-++ .+|++.+.|+
T Consensus 30 c~~s~~~-~vvigt~~G~V~~Ln~s--~~~~-~-----------------~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~ 88 (933)
T KOG2114|consen 30 CCSSSTG-SVVIGTADGRVVILNSS--FQLI-R-----------------GFQAYEQSIVQFLYILNKQNFLFSVGEDEQ 88 (933)
T ss_pred EEcCCCc-eEEEeeccccEEEeccc--ceee-e-----------------hheecchhhhhHhhcccCceEEEEEeecCC
Confidence 3567666 59999999988877643 2110 0 133444443333344444 6788777664
Q ss_pred ----eEEEEEecCCccce---ee--eeeec-----CCCCeeEEEEecCCCceEEEEEcCCCcEEEEe---c--CCCeeeE
Q 001184 432 ----LIHLYTYQGSNDLC---QS--LEIDA-----HVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD---L--SGRKLFQ 492 (1130)
Q Consensus 432 ----~i~vwd~~~~~~~~---~~--~~~~~-----h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd---~--~~~~~~~ 492 (1130)
.++|||++.-+.-. .. ..+.+ ...++.+++.+.+-+ .+|.|-.+|.|..+. . .|....-
T Consensus 89 ~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~--~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~ 166 (933)
T KOG2114|consen 89 GNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK--TIVCGFTNGLVICYKGDILRDRGSRQDY 166 (933)
T ss_pred CCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcccc--EEEEEecCcEEEEEcCcchhccccceee
Confidence 58999986431111 11 11222 355789999999977 789999999999886 1 2332233
Q ss_pred ecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCccee-eecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEE
Q 001184 493 FEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV-DYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVE 571 (1130)
Q Consensus 493 ~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1130)
...-..+|+.+++...+ ..++-...-..|.+|.+....+.. .+..++....|..+++....+++++ ...+++
T Consensus 167 ~~~~~~pITgL~~~~d~--~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-----~e~l~f 239 (933)
T KOG2114|consen 167 SHRGKEPITGLALRSDG--KSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-----SEFLYF 239 (933)
T ss_pred eccCCCCceeeEEecCC--ceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-----CceEEE
Confidence 33456799999986544 332333345678999988655333 4777888999999998777566665 568999
Q ss_pred eeCCCCceeEEEe
Q 001184 572 WNESEGALKRTYI 584 (1130)
Q Consensus 572 wd~~~~~~~~~~~ 584 (1130)
|+.........+.
T Consensus 240 Y~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 240 YDSDGRGPCFAFE 252 (933)
T ss_pred EcCCCcceeeeec
Confidence 9987666666665
No 338
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.06 E-value=0.0018 Score=75.71 Aligned_cols=240 Identities=11% Similarity=0.136 Sum_probs=139.3
Q ss_pred CEEEEEe-CCeEEEEECCCceeEEEEeCCCCC-----e-EEEEEeCCCCcEEEEEe---------CCCcEEEEEeecCeE
Q 001184 846 SYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPA-----S-TFLAFHPQDNNIIAIGM---------EDSTIQIYNVRVDEV 909 (1130)
Q Consensus 846 ~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~-----i-~~l~~sp~~~~~lasg~---------~dg~v~iwd~~~~~~ 909 (1130)
..++.++ +|.|..+|.++++.+-.+...... + .+..+. + .++++++ .+|.|+-+|..+|+.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--K-KLVIIGSSGAEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--C-CEEEEeccccccccCCCCcEEEEEECCCCce
Confidence 4455554 899999999999999887643321 1 122232 2 3444554 367899999999988
Q ss_pred EEEEecCCC--------------------Ce-eEEEEccCCCeEEEEeCCC------------------cEEEEECCCCc
Q 001184 910 KTKLKGHQK--------------------HI-TGLAFSTNLNILVSSGSDA------------------QLIFWNTDTWE 950 (1130)
Q Consensus 910 ~~~l~~h~~--------------------~V-~~l~~s~dg~~L~s~s~Dg------------------~i~vwd~~~~~ 950 (1130)
+-++..... .| ...++.+.+..++.++.++ .|.-.|+++++
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 776653211 11 1244555567788777665 68888999887
Q ss_pred ccceeeEeccC-----CCCCCCeEEEEEcCCCc---EEEE-EcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCC
Q 001184 951 KRKSIAIQLPA-----GKLPVGETRVQFHSDQV---RLLV-NHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNS 1021 (1130)
Q Consensus 951 ~~~~~~~~~~~-----~~~~~~v~~~~~s~d~~---~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg 1021 (1130)
..-........ ......+..+. .-+|. .+++ +.++.+...|..+|+.+-..... ...++.+|
T Consensus 268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~------~~~~~~~~-- 338 (488)
T cd00216 268 VKWFYQTTPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV------EQPMAYDP-- 338 (488)
T ss_pred EEEEeeCCCCCCcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee------ccccccCC--
Confidence 64332211110 00000111111 12333 3344 56899999999999988765432 11233344
Q ss_pred CEEEEE------------------eCCCcEEEEeCCCcccccccCCCcccccCCCCCcee--eeEEEEEcCCCCCEEEEE
Q 001184 1022 QLIYAT------------------FTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTV--FPLVVTSHPQEPNQLAVG 1081 (1130)
Q Consensus 1022 ~~l~t~------------------~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~s~ 1081 (1130)
..++.+ ..+|.+.-.|+.+|+.+-+.......... ..+... .++.+ .+.+|+++
T Consensus 339 ~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~-~~g~~~~~~~~~~-----~g~~v~~g 412 (488)
T cd00216 339 GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSW-NIGFPHWGGSLAT-----AGNLVFAG 412 (488)
T ss_pred ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCcccccc-ccCCcccCcceEe-----cCCeEEEE
Confidence 223332 23578888899998877665533100000 000000 11112 35688999
Q ss_pred eCCCcEEEEeCCCCccCCcccc
Q 001184 1082 LTDGSVKVIEPSETERKWGVAV 1103 (1130)
Q Consensus 1082 ~~Dg~v~vW~~~~~~~~w~~~~ 1103 (1130)
+.||.|.-+|..+++..|....
T Consensus 413 ~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 413 AADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred CCCCeEEEEECCCCceeeEEEC
Confidence 9999999999999999998765
No 339
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=98.06 E-value=5.5e-06 Score=51.25 Aligned_cols=27 Identities=33% Similarity=0.537 Sum_probs=24.8
Q ss_pred HHHHHHHHHhhhhccHHHHHHHHHHhc
Q 001184 6 RELVFLILQFLDEEKFKESVHRLEQES 32 (1130)
Q Consensus 6 ~e~~rli~q~L~~~g~~~s~~~L~~Es 32 (1130)
+++++||++||.+.||.+||.+|.+||
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 579999999999999999999999997
No 340
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.06 E-value=7.8e-05 Score=85.25 Aligned_cols=181 Identities=8% Similarity=0.101 Sum_probs=130.4
Q ss_pred CCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCc
Q 001184 420 DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEA 498 (1130)
Q Consensus 420 dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~ 498 (1130)
++..++.|+....+..+|+.+.+..+. ..-..+.|.-+.. +++ .+.+|...|+|.+-| .+-+.++++..|++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~---~~v~a~~v~imR~--Nnr--~lf~G~t~G~V~LrD~~s~~~iht~~aHs~ 218 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRT---TNVSASGVTIMRY--NNR--NLFCGDTRGTVFLRDPNSFETIHTFDAHSG 218 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeee---eeccCCceEEEEe--cCc--EEEeecccceEEeecCCcCceeeeeecccc
Confidence 455777788888899999998775542 2222223544443 466 799999999999999 88999999999999
Q ss_pred CEEEEeecccCCccEEEEEec---------CCcEEEEEccCCcceeeecCCCccEEEEEEecC-CCeEEEeeecCCCCcE
Q 001184 499 PVYSVCPHQKENIHFIFSTAV---------DGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSAD-GSRLFSCGTSKEGDSH 568 (1130)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~---------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~~~~~~~~ 568 (1130)
.|..+.. .|+.|+++|. |.-|+|||++..+.+..+..+..+ .-+.|.|. ...+++++. .|+
T Consensus 219 siSDfDv----~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~----sGq 289 (1118)
T KOG1275|consen 219 SISDFDV----QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQ----SGQ 289 (1118)
T ss_pred ceeeeec----cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEec----ccc
Confidence 9998865 4478888875 566899999988777665555443 44666764 344555554 778
Q ss_pred EEEeeC---CCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001184 569 LVEWNE---SEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWD 616 (1130)
Q Consensus 569 i~~wd~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 616 (1130)
..+-|. .+...-.......+..+..++++++++.++.|..+|.|.+|.
T Consensus 290 ~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 290 FQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 888883 222221222222333588899999999999999999999997
No 341
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.04 E-value=0.0045 Score=72.28 Aligned_cols=110 Identities=12% Similarity=0.076 Sum_probs=67.5
Q ss_pred cEEEEEecCCcEEEEEccCCcceeeecCCCc------cE--EEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEE
Q 001184 512 HFIFSTAVDGKIKAWLYDNVGSRVDYDAPGL------WC--TTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTY 583 (1130)
Q Consensus 512 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~------~v--~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 583 (1130)
..++.++.++.+.-.|..+++....+..... .+ ..+.+. ++..++.+.. ++.|+-+|.++|+.+..+
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~----~g~v~AlD~~TG~~~W~~ 136 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTF----DGRLVALDAETGKQVWKF 136 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecC----CCeEEEEECCCCCEeeee
Confidence 3566777788888888888777766544322 00 011111 2245555543 889999999999998777
Q ss_pred ecccCc----eeE-EEEEcCCCCEEEEEe---------CCCcEEEEeCCCCceeEEEec
Q 001184 584 IGFRKK----SAG-VVQFDTTRNRILAAG---------EDNQIKFWDMDNVNMLTSTEA 628 (1130)
Q Consensus 584 ~~~~~~----~v~-~~~~~~~~~~l~~~~---------~dg~i~vwd~~~~~~~~~~~~ 628 (1130)
...... .+. ...+. +..++.++ .+|.++.+|..+|+.+-....
T Consensus 137 ~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 137 GNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred cCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 643220 011 11222 24555553 368899999999998877655
No 342
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.04 E-value=0.0025 Score=68.45 Aligned_cols=285 Identities=14% Similarity=0.080 Sum_probs=142.5
Q ss_pred EEEEEeccCCeEEEeee-CCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEE
Q 001184 771 ARLLYTNSGIGILALWS-NGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVM 849 (1130)
Q Consensus 771 ~~l~~s~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la 849 (1130)
..=+|.++|+.|+.++. +|.-.+|-+ |+.+++..+. ..+.........++++.+.++
T Consensus 39 ~~~~ft~dG~kllF~s~~dg~~nly~l--------------------DL~t~~i~QL--Tdg~g~~~~g~~~s~~~~~~~ 96 (386)
T PF14583_consen 39 YQNCFTDDGRKLLFASDFDGNRNLYLL--------------------DLATGEITQL--TDGPGDNTFGGFLSPDDRALY 96 (386)
T ss_dssp TS--B-TTS-EEEEEE-TTSS-EEEEE--------------------ETTT-EEEE-----SS-B-TTT-EE-TTSSEEE
T ss_pred cCCCcCCCCCEEEEEeccCCCcceEEE--------------------EcccCEEEEC--ccCCCCCccceEEecCCCeEE
Confidence 34567899988888776 555555532 4455554442 222222233466778888876
Q ss_pred EEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeC-CCCcEEEEEeC----------------------CCcEEEEEee
Q 001184 850 SAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHP-QDNNIIAIGME----------------------DSTIQIYNVR 905 (1130)
Q Consensus 850 ~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp-~~~~~lasg~~----------------------dg~v~iwd~~ 905 (1130)
... +..|+-.|+.+.+....+..+...+-...|.. .++..++-.-. ...|.-.|+.
T Consensus 97 Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~ 176 (386)
T PF14583_consen 97 YVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLK 176 (386)
T ss_dssp EEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETT
T ss_pred EEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECC
Confidence 654 67899999999988777776666665566643 24555432211 1235556777
Q ss_pred cCeEEEEEecCCCCeeEEEEccCCCeEEEEeC----CCc-EEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEE
Q 001184 906 VDEVKTKLKGHQKHITGLAFSTNLNILVSSGS----DAQ-LIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRL 980 (1130)
Q Consensus 906 ~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~----Dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l 980 (1130)
+|+....+. -...+..+.|||....++.=+. |.. -+||-+.+....... +........+..=.|+|||..+
T Consensus 177 tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~---v~~~~~~e~~gHEfw~~DG~~i 252 (386)
T PF14583_consen 177 TGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKK---VHRRMEGESVGHEFWVPDGSTI 252 (386)
T ss_dssp T--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EE---SS---TTEEEEEEEE-TTSS-E
T ss_pred CCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCccee---eecCCCCcccccccccCCCCEE
Confidence 777655554 3456778999997665555443 322 367777653322111 1122223566677899999987
Q ss_pred EE-E-----cCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCC----------------cEEEEeC
Q 001184 981 LV-N-----HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDG----------------SIGVFDA 1038 (1130)
Q Consensus 981 ~~-~-----~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg----------------~i~vwd~ 1038 (1130)
.. + .+..|.-+|+.+++....... ......-.++||++++-=+.|. .|+++++
T Consensus 253 ~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~-----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~ 327 (386)
T PF14583_consen 253 WYDSYTPGGQDFWIAGYDPDTGERRRLMEM-----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDV 327 (386)
T ss_dssp EEEEEETTT--EEEEEE-TTT--EEEEEEE------SEEEEEE-TTSSEEEEEE-------------------EEEEEET
T ss_pred EEEeecCCCCceEEEeeCCCCCCceEEEeC-----CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEecc
Confidence 75 2 244577788888866443222 2455666789999887655442 5677888
Q ss_pred CCcccccccCCC--ccccc-C--CCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeC
Q 001184 1039 DSLRLRCRIAPS--AYMSQ-A--SPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEP 1092 (1130)
Q Consensus 1039 ~~~~~~~~~~~~--~~~~~-~--~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~ 1092 (1130)
+.++......+. ..+.. . ..|.| ..|+|++...|.++...|...|+-+
T Consensus 328 ~~~~~~~l~~h~~sw~v~~~~~q~~hPh------p~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 328 EAGRFRKLARHDTSWKVLDGDRQVTHPH------PSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp TTTEEEEEEE-------BTTBSSTT----------EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred ccCceeeeeeccCcceeecCCCccCCCC------CccCCCCCEEEEECCCCCCccEEEE
Confidence 877653222111 00000 0 01333 7899976666667777887776644
No 343
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=98.03 E-value=4.3e-06 Score=64.85 Aligned_cols=53 Identities=38% Similarity=0.537 Sum_probs=42.8
Q ss_pred cHHHHHHHHhccCHHHHHHHhccCCCcCCCccchhhhHHHHHhHHHHHHhcCCH
Q 001184 37 NMKYFEEKALAGEWDEIEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRHDR 90 (1130)
Q Consensus 37 ~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lell~~~~~ 90 (1130)
++..++++|+.|+|++|++.++..........+ .+.|.|++|+|+||++.++.
T Consensus 4 ~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~-~l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 4 ERKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKL 56 (58)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCC-CchhHHHHHHHHHHHHcCCc
Confidence 367899999999999999999888443322223 49999999999999998764
No 344
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.01 E-value=0.0059 Score=70.38 Aligned_cols=251 Identities=15% Similarity=0.070 Sum_probs=135.3
Q ss_pred CEEEEEEecCCCeEEEEEeCcC----eEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEE
Q 001184 349 SVVSMDFHPFHHTLLVVGCGDG----EITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1130)
Q Consensus 349 ~V~~v~fspdg~~llasg~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 424 (1130)
.+..+++||||++++++-+..| .+++.|+.+|+.+.. . +.. ..-.+++|.+|++.|
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~-----------------i~~--~~~~~~~W~~d~~~~ 184 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-G-----------------IEN--PKFSSVSWSDDGKGF 184 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-E-----------------EEE--EESEEEEECTTSSEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-c-----------------ccc--cccceEEEeCCCCEE
Confidence 3446789999997666545444 499999999977642 0 111 112249999999987
Q ss_pred EEEeCCC-----------eEEEEEecCCccceeeeeeecCCCC--eeEEEEecCCCceEEEEEcCC--CcEEEEecCC--
Q 001184 425 GVAFTKH-----------LIHLYTYQGSNDLCQSLEIDAHVGG--VNDLAFSYPNKQLCIVTCGDD--KLIRVWDLSG-- 487 (1130)
Q Consensus 425 as~~~d~-----------~i~vwd~~~~~~~~~~~~~~~h~~~--V~~i~~s~d~~~l~l~s~s~d--~~v~iwd~~~-- 487 (1130)
+....+. .|..|++.++..-. ...+.+.... ...+..++|++.+++.+.+.. ..+.+.|...
T Consensus 185 ~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d-~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~ 263 (414)
T PF02897_consen 185 FYTRFDEDQRTSDSGYPRQVYRHKLGTPQSED-ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGG 263 (414)
T ss_dssp EEEECSTTTSS-CCGCCEEEEEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTT
T ss_pred EEEEeCcccccccCCCCcEEEEEECCCChHhC-eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccC
Confidence 7665333 37777776654321 1234443333 568899999996333333332 3577777332
Q ss_pred ---CeeeEecCCCcCEEEEeecccCCccEEEEE---ecCCcEEEEEccCCcc---eeeecCCCccEEEEEEecCCCeEEE
Q 001184 488 ---RKLFQFEGHEAPVYSVCPHQKENIHFIFST---AVDGKIKAWLYDNVGS---RVDYDAPGLWCTTMLYSADGSRLFS 558 (1130)
Q Consensus 488 ---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~---s~dg~i~vwd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~ 558 (1130)
.....+......+....-+. + +.+++.. ...+.|...++..... ...+..+...+.-..+...+.+|+.
T Consensus 264 ~~~~~~~~l~~~~~~~~~~v~~~-~-~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl 341 (414)
T PF02897_consen 264 SPDAKPKLLSPREDGVEYYVDHH-G-DRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVL 341 (414)
T ss_dssp TSS-SEEEEEESSSS-EEEEEEE-T-TEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEE
T ss_pred CCcCCcEEEeCCCCceEEEEEcc-C-CEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEE
Confidence 23444443343343322222 2 2333333 2235666667776653 2234444443333334445566665
Q ss_pred eeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEE--Ee--CCCcEEEEeCCCCcee
Q 001184 559 CGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILA--AG--EDNQIKFWDMDNVNML 623 (1130)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~--~dg~i~vwd~~~~~~~ 623 (1130)
... .++...|+++++..+...........+.+..+...++++.+.. .+ .-++++.||+.+++..
T Consensus 342 ~~~-~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 342 SYR-ENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEE-ETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred EEE-ECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 543 3557789999988455555555444445566655566654333 22 2367888899888754
No 345
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.98 E-value=0.00024 Score=80.56 Aligned_cols=182 Identities=13% Similarity=0.160 Sum_probs=126.1
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 425 (1130)
..+.++|++++. .+++-|+.+|.|++.+....- . ....|+.. ..+|.++|
T Consensus 38 ~~D~is~~av~~---~~~~~GtH~g~v~~~~~~~~~--~-------------------~~~~~s~~------~~~Gey~a 87 (846)
T KOG2066|consen 38 QNDAISCCAVHD---KFFALGTHRGAVYLTTCQGNP--K-------------------TNFDHSSS------ILEGEYVA 87 (846)
T ss_pred hhhHHHHHHhhc---ceeeeccccceEEEEecCCcc--c-------------------cccccccc------ccCCceEE
Confidence 456788888875 479999999999999986432 1 12234333 66899999
Q ss_pred EEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecC-----CCceEEEEEcCCCcEEEEe--cCCCe-eeEecCCC
Q 001184 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYP-----NKQLCIVTCGDDKLIRVWD--LSGRK-LFQFEGHE 497 (1130)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d-----~~~l~l~s~s~d~~v~iwd--~~~~~-~~~~~~h~ 497 (1130)
+|+.||+|.|-.+-+.+... .+ .-..++.+++++|| .+ .+++||.-| +.++. .-|.. -..+..-.
T Consensus 88 sCS~DGkv~I~sl~~~~~~~---~~-df~rpiksial~Pd~~~~~sk--~fv~GG~ag-lvL~er~wlgnk~~v~l~~~e 160 (846)
T KOG2066|consen 88 SCSDDGKVVIGSLFTDDEIT---QY-DFKRPIKSIALHPDFSRQQSK--QFVSGGMAG-LVLSERNWLGNKDSVVLSEGE 160 (846)
T ss_pred EecCCCcEEEeeccCCccce---eE-ecCCcceeEEeccchhhhhhh--heeecCcce-EEEehhhhhcCccceeeecCc
Confidence 99999999999998876543 12 24567999999998 34 689999888 77776 22322 23466678
Q ss_pred cCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCc------cEEEEEEecCCCeEEEeeecCCCCcEEEE
Q 001184 498 APVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGL------WCTTMLYSADGSRLFSCGTSKEGDSHLVE 571 (1130)
Q Consensus 498 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~------~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1130)
++|.+++|.. ++++-++ |-.|++||....+.+..+..... ....+.|.++.+.++--+ .+|++
T Consensus 161 G~I~~i~W~g----~lIAWan-d~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~------d~v~i 229 (846)
T KOG2066|consen 161 GPIHSIKWRG----NLIAWAN-DDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWG------DSVKI 229 (846)
T ss_pred cceEEEEecC----cEEEEec-CCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecC------CeEEE
Confidence 9999999843 4666665 45579999988777665544333 234577777766555443 35677
Q ss_pred eeCC
Q 001184 572 WNES 575 (1130)
Q Consensus 572 wd~~ 575 (1130)
..++
T Consensus 230 ~~I~ 233 (846)
T KOG2066|consen 230 CSIK 233 (846)
T ss_pred EEEe
Confidence 6665
No 346
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.98 E-value=0.00034 Score=77.40 Aligned_cols=134 Identities=12% Similarity=0.047 Sum_probs=92.9
Q ss_pred CcccccCCcccceeeeccCCCCEEEEEEecCCCeEEEEE----eCcCe----EEEEeCCCCceeecccceeeeccccccc
Q 001184 328 QATWSLDDLPRAVACTMHQGSSVVSMDFHPFHHTLLVVG----CGDGE----ITLWDVGLRERLVSKPFKIWDMSNCSMM 399 (1130)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~llasg----~~dg~----i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 399 (1130)
++.++.....-+++..+.-+....++.||-...+.+.+- +.+|. -.+|++..++..+.
T Consensus 186 l~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrv-------------- 251 (545)
T PF11768_consen 186 LHLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRV-------------- 251 (545)
T ss_pred EEEEEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEE--------------
Confidence 344444444445555555666778888887554444432 23443 34666654433221
Q ss_pred eeeeeecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCc
Q 001184 400 LQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKL 479 (1130)
Q Consensus 400 ~~~~~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~ 479 (1130)
.-+--.....|.|++++|+.+.|+.|+.||.|++||...+... +..+.-..+.++|+|+|. ++++|+..|.
T Consensus 252 --svtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~-----~~ka~~~P~~iaWHp~ga--i~~V~s~qGe 322 (545)
T PF11768_consen 252 --SVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL-----LAKAEFIPTLIAWHPDGA--IFVVGSEQGE 322 (545)
T ss_pred --EEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee-----eeeecccceEEEEcCCCc--EEEEEcCCce
Confidence 1122356778999999999999999999999999999776322 223445688999999999 8999999999
Q ss_pred EEEEe
Q 001184 480 IRVWD 484 (1130)
Q Consensus 480 v~iwd 484 (1130)
+.+||
T Consensus 323 lQ~FD 327 (545)
T PF11768_consen 323 LQCFD 327 (545)
T ss_pred EEEEE
Confidence 99999
No 347
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.97 E-value=0.00076 Score=75.94 Aligned_cols=228 Identities=11% Similarity=0.135 Sum_probs=123.1
Q ss_pred ccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCC
Q 001184 767 ASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDS 846 (1130)
Q Consensus 767 ~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~ 846 (1130)
......+.++|+|+.+++ ..+|...++.... ......+.....+|.++++
T Consensus 32 ~~~p~~ls~npngr~v~V-~g~geY~iyt~~~-----------------------------~r~k~~G~g~~~vw~~~n~ 81 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLV-CGDGEYEIYTALA-----------------------------WRNKAFGSGLSFVWSSRNR 81 (443)
T ss_dssp SS--SEEEE-TTSSEEEE-EETTEEEEEETTT-----------------------------TEEEEEEE-SEEEE-TSSE
T ss_pred CcCCeeEEECCCCCEEEE-EcCCEEEEEEccC-----------------------------CcccccCceeEEEEecCcc
Confidence 344678999999998888 6667777775110 0001234556788988776
Q ss_pred EEEEEeCCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEc
Q 001184 847 YVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFS 926 (1130)
Q Consensus 847 ~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s 926 (1130)
+.+.-..++|.|+.--..+..+.+... ..+..+- +|.+|...+.+ .|.+||..+++.+.++... +|..+.|+
T Consensus 82 yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If----~G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws 153 (443)
T PF04053_consen 82 YAVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKIF----GGNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWS 153 (443)
T ss_dssp EEEE-TTS-EEEEETTEE-TT-----S-S-EEEEE-----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-
T ss_pred EEEEECCCeEEEEEcCccccceEEcCC-cccceEE----cCcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEE
Confidence 555555788999743333332333322 1233333 26677766555 7999999999999998743 38999999
Q ss_pred cCCCeEEEEeCCCcEEEEECCCCc-------ccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCceee
Q 001184 927 TNLNILVSSGSDAQLIFWNTDTWE-------KRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECI 999 (1130)
Q Consensus 927 ~dg~~L~s~s~Dg~i~vwd~~~~~-------~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~ 999 (1130)
++|.+++..+.+ .+.+++.+... .......... .....|.+.+|..| .++.+... +++-+--.....+
T Consensus 154 ~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~--E~~~~IkSg~W~~d-~fiYtT~~-~lkYl~~Ge~~~i 228 (443)
T PF04053_consen 154 DDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIH--EISERIKSGCWVED-CFIYTTSN-HLKYLVNGETGII 228 (443)
T ss_dssp TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEE--EE-S--SEEEEETT-EEEEE-TT-EEEEEETTEEEEE
T ss_pred CCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEE--EecceeEEEEEEcC-EEEEEcCC-eEEEEEcCCcceE
Confidence 999999999866 57777765430 0000000110 00267888999888 45545444 7766433333333
Q ss_pred eeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCccc
Q 001184 1000 RQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRL 1043 (1130)
Q Consensus 1000 ~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~ 1043 (1130)
..+ ..++.-+.+.+..+.++....|+.|..+.+.....
T Consensus 229 ~~l------d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~~~ 266 (443)
T PF04053_consen 229 AHL------DKPLYLLGYLPKENRLYLIDRDGNVISYELDLSEL 266 (443)
T ss_dssp EE-------SS--EEEEEETTTTEEEEE-TT--EEEEE--HHHH
T ss_pred EEc------CCceEEEEEEccCCEEEEEECCCCEEEEEECHHHH
Confidence 333 45788888999888899999999999998875543
No 348
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.92 E-value=0.0036 Score=69.58 Aligned_cols=114 Identities=18% Similarity=0.213 Sum_probs=80.2
Q ss_pred CCceeEEEEecC-CCEEEEE----e-CCe----EEEEECCCceeEEE--E-eCCCCCeEEEEEeCCCCcEEEEEeCCCcE
Q 001184 833 EDVVPCVALSKN-DSYVMSA----G-GGK----VSLFNMMNFKVMTT--F-MSPPPASTFLAFHPQDNNIIAIGMEDSTI 899 (1130)
Q Consensus 833 ~~~i~~l~~s~d-g~~la~~----~-dg~----i~iwd~~~~~~~~~--~-~~~~~~i~~l~~sp~~~~~lasg~~dg~v 899 (1130)
+....++.||.. ...+.+. + +|. ..+|++...+..+. . -.....+.+++++| +...|+.|+.||+|
T Consensus 205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSi 283 (545)
T PF11768_consen 205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSI 283 (545)
T ss_pred cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeE
Confidence 334466777753 3333332 1 333 45677765543222 1 13567899999999 88889999999999
Q ss_pred EEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCC
Q 001184 900 QIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTW 949 (1130)
Q Consensus 900 ~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~ 949 (1130)
.+||...+... +..+.-..+.++|+|+|..+++|+..|.+.+||+.-+
T Consensus 284 iLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 284 ILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 99998766332 3334556788999999999999999999999998764
No 349
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.91 E-value=0.0018 Score=72.96 Aligned_cols=225 Identities=11% Similarity=0.071 Sum_probs=120.2
Q ss_pred ecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe
Q 001184 405 VKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD 484 (1130)
Q Consensus 405 ~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd 484 (1130)
+.........+.++|+|+++++++ ||.-.|+.... .+. ...+.-...+|.+.++ +|+-...++|.|+.
T Consensus 28 lg~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~---~r~-----k~~G~g~~~vw~~~n~---yAv~~~~~~I~I~k 95 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALA---WRN-----KAFGSGLSFVWSSRNR---YAVLESSSTIKIYK 95 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTT---TEE-----EEEEE-SEEEE-TSSE---EEEE-TTS-EEEEE
T ss_pred CCCCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccC---Ccc-----cccCceeEEEEecCcc---EEEEECCCeEEEEE
Confidence 444555688999999999999954 67777777332 221 1234456789998665 56666688999976
Q ss_pred -cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecC
Q 001184 485 -LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSK 563 (1130)
Q Consensus 485 -~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1130)
.+......+... ..+..+.. |.+|...+ ++.|.+||+++...+..+... +|..+.|+++|++++..+
T Consensus 96 n~~~~~~k~i~~~-~~~~~If~-----G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t--- 163 (443)
T PF04053_consen 96 NFKNEVVKSIKLP-FSVEKIFG-----GNLLGVKS-SDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVT--- 163 (443)
T ss_dssp TTEE-TT-----S-S-EEEEE------SSSEEEEE-TTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE----
T ss_pred cCccccceEEcCC-cccceEEc-----CcEEEEEC-CCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEe---
Confidence 555444444321 23444422 45555554 448999999998888877654 389999999999999987
Q ss_pred CCCcEEEEeeCCCC-----------ceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCC
Q 001184 564 EGDSHLVEWNESEG-----------ALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGL 632 (1130)
Q Consensus 564 ~~~~~i~~wd~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 632 (1130)
+..+++++.... .....+... ...|.+.+|..+ .++-.+.. +|+. +-+|+.-.......
T Consensus 164 --~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~-~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld~-- 233 (443)
T PF04053_consen 164 --KDSIYILKYNLEAVAAIPEEGVEDAFELIHEI-SERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLDK-- 233 (443)
T ss_dssp --S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE--S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-SS--
T ss_pred --CCeEEEEEecchhcccccccCchhceEEEEEe-cceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcCC--
Confidence 556777664322 022222211 225667777655 33333333 6665 33444322222221
Q ss_pred CCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 633 PSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 633 ~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
++.-+.+.+..+.+.....++.+..+.+...
T Consensus 234 -~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 234 -PLYLLGYLPKENRLYLIDRDGNVISYELDLS 264 (443)
T ss_dssp ---EEEEEETTTTEEEEE-TT--EEEEE--HH
T ss_pred -ceEEEEEEccCCEEEEEECCCCEEEEEECHH
Confidence 5677778887788999999999999887654
No 350
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.88 E-value=0.0061 Score=67.88 Aligned_cols=251 Identities=16% Similarity=0.223 Sum_probs=133.2
Q ss_pred CEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceee------c------------ccceeeeccccc------cceeeee
Q 001184 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLV------S------------KPFKIWDMSNCS------MMLQAAI 404 (1130)
Q Consensus 349 ~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~------~------------~~~~~~~~~~~~------~~~~~~~ 404 (1130)
.|+++.|+++... |++|...|.|.||.+...+... . .+-++.|+.... ...+...
T Consensus 3 ~v~~vs~a~~t~E-lav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLE-LAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTE-EEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCce-EEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 6899999999775 8999999999999886543321 0 011233333211 1234445
Q ss_pred ecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeec------CCCCeeEEEEec-----CC-CceEEE
Q 001184 405 VKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDA------HVGGVNDLAFSY-----PN-KQLCIV 472 (1130)
Q Consensus 405 ~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~------h~~~V~~i~~s~-----d~-~~l~l~ 472 (1130)
+....+.|++++.| |=-++|.|..+|.+.|.|+++...+.. ..+.. ....|+++.|+- |+ ..++++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~-~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYN-ENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEE-EEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEee-ccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 66778999999998 555999999999999999977654432 22222 334688888872 22 124788
Q ss_pred EEcCCCcEEEEe-c-C--CCeeeEe----cCCCcCEEEEeecccCCc-------------------cEEEEEecCCcEEE
Q 001184 473 TCGDDKLIRVWD-L-S--GRKLFQF----EGHEAPVYSVCPHQKENI-------------------HFIFSTAVDGKIKA 525 (1130)
Q Consensus 473 s~s~d~~v~iwd-~-~--~~~~~~~----~~h~~~v~~~~~~~~~~~-------------------~~l~s~s~dg~i~v 525 (1130)
.|...|.+.+|. . . +.....+ ..+.++|..+..-...++ +-++....+..+++
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 888899999997 2 1 3222222 246677766653211111 22444555788999
Q ss_pred EEccCCcceeeecCCCccEEEEEEe-----cCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccC---ceeEEEEEc
Q 001184 526 WLYDNVGSRVDYDAPGLWCTTMLYS-----ADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRK---KSAGVVQFD 597 (1130)
Q Consensus 526 wd~~~~~~~~~~~~~~~~v~~~~~s-----~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~---~~v~~~~~~ 597 (1130)
+...+.+...........+..+.+- ..+..|++... +|.++++.+..-+.+..+.-... ..+...+++
T Consensus 240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~----~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis 315 (395)
T PF08596_consen 240 FKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFN----NGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSIS 315 (395)
T ss_dssp E-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEET----TSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-
T ss_pred EeCCCCcccceeeccccccceEEEEeecccCCceEEEEEEC----CCcEEEEECCCchHhhcccCCCccccccccccEEC
Confidence 9887766655444332344455553 24455555543 89999999998887776664321 122335566
Q ss_pred CCCCEEEEE
Q 001184 598 TTRNRILAA 606 (1130)
Q Consensus 598 ~~~~~l~~~ 606 (1130)
++|..++-.
T Consensus 316 ~~Gdi~~~~ 324 (395)
T PF08596_consen 316 RNGDIFYWT 324 (395)
T ss_dssp TTS-EEEE-
T ss_pred CCCCEEEEe
Confidence 666644444
No 351
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=97.86 E-value=2.1e-05 Score=53.07 Aligned_cols=32 Identities=34% Similarity=0.513 Sum_probs=29.6
Q ss_pred chHHHHHHHHHhhhhccHHHHHHHHHHhcCCC
Q 001184 4 LSRELVFLILQFLDEEKFKESVHRLEQESGFF 35 (1130)
Q Consensus 4 ~~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~ 35 (1130)
.++++.++|+|||...||.+|+.+|++|+|+.
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 36789999999999999999999999999974
No 352
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.79 E-value=0.0064 Score=68.81 Aligned_cols=199 Identities=15% Similarity=0.134 Sum_probs=106.5
Q ss_pred EEEecCCCEEEEEeCC------------eEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeec
Q 001184 839 VALSKNDSYVMSAGGG------------KVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRV 906 (1130)
Q Consensus 839 l~~s~dg~~la~~~dg------------~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~ 906 (1130)
++.+|.|..+|...|. .|+||+... +.+..+.-..+.+.++.|+. +..++ +-..||.+++||+..
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG-~ll~~i~w~~~~iv~~~wt~-~e~Lv-vV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSG-KLLSSIPWDSGRIVGMGWTD-DEELV-VVQSDGTVRVYDLFG 110 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCCC-CEeEEEEECCCCEEEEEECC-CCeEE-EEEcCCEEEEEeCCC
Confidence 4556666666655443 599999865 45555554448999999997 55544 566899999999863
Q ss_pred Ce------EEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCC----CCCeEE-EEEcC
Q 001184 907 DE------VKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKL----PVGETR-VQFHS 975 (1130)
Q Consensus 907 ~~------~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~----~~~v~~-~~~s~ 975 (1130)
.. .+....-....+....+..+| ++.-..++.+.+-+-.............+.... ...... ..++.
T Consensus 111 ~~~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~ 188 (410)
T PF04841_consen 111 EFQFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSS 188 (410)
T ss_pred ceeechhhhccccCcccccccccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeec
Confidence 33 111111122223333444455 333334444443322221100000001111100 011111 23444
Q ss_pred CCcEEEE-EcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCC
Q 001184 976 DQVRLLV-NHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAP 1049 (1130)
Q Consensus 976 d~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~ 1049 (1130)
+....+. ..++.+.+.+....+. +.. .+++..|++||+|++||.-..+|.+.|....-.+..+.+..
T Consensus 189 ~~~~~i~~~~g~~i~~i~~~~~~~---i~~----~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~ 256 (410)
T PF04841_consen 189 DRVVEILLANGETIYIIDENSFKQ---IDS----DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDT 256 (410)
T ss_pred CcceEEEEecCCEEEEEEcccccc---ccC----CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeec
Confidence 4443333 4445555444322211 111 36899999999999999999999999998776666666653
No 353
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.75 E-value=0.0061 Score=62.72 Aligned_cols=191 Identities=12% Similarity=0.159 Sum_probs=109.1
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 425 (1130)
-...+..++|.|+.+.|+++....+.|...+.+ |+.++..+ +.+ .+..-.|++..++.+++
T Consensus 20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~-----------------l~g-~~D~EgI~y~g~~~~vl 80 (248)
T PF06977_consen 20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIP-----------------LDG-FGDYEGITYLGNGRYVL 80 (248)
T ss_dssp --S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE------------------SS--SSEEEEEE-STTEEEE
T ss_pred ccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEe-----------------CCC-CCCceeEEEECCCEEEE
Confidence 345699999999988888888888999989874 77765322 223 34677899988888887
Q ss_pred EEeCCCeEEEEEecCCcc-c--ee--eeee--e-cCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecC----CCeeeE-
Q 001184 426 VAFTKHLIHLYTYQGSND-L--CQ--SLEI--D-AHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLS----GRKLFQ- 492 (1130)
Q Consensus 426 s~~~d~~i~vwd~~~~~~-~--~~--~~~~--~-~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~----~~~~~~- 492 (1130)
+--.++.+.++++..... + .. ...+ . .++..+-.++|.+.++. |+.+-+..-..|+... +..+..
T Consensus 81 ~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~--L~v~kE~~P~~l~~~~~~~~~~~~~~~ 158 (248)
T PF06977_consen 81 SEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR--LFVAKERKPKRLYEVNGFPGGFDLFVS 158 (248)
T ss_dssp EETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTE--EEEEEESSSEEEEEEESTT-SS--EEE
T ss_pred EEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCE--EEEEeCCCChhhEEEccccCccceeec
Confidence 776789999999844321 1 11 1111 1 35567999999999884 4455556666666622 222211
Q ss_pred -------ecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCC---------ccEEEEEEecCCCeE
Q 001184 493 -------FEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPG---------LWCTTMLYSADGSRL 556 (1130)
Q Consensus 493 -------~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~---------~~v~~~~~s~~~~~l 556 (1130)
.......+.++.++|. .+++++.......|..+|. .++....+.... .....|+|.++|++.
T Consensus 159 ~~~~~~~~~~~~~d~S~l~~~p~-t~~lliLS~es~~l~~~d~-~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LY 236 (248)
T PF06977_consen 159 DDQDLDDDKLFVRDLSGLSYDPR-TGHLLILSDESRLLLELDR-QGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLY 236 (248)
T ss_dssp E-HHHH-HT--SS---EEEEETT-TTEEEEEETTTTEEEEE-T-T--EEEEEE-STTGGG-SS---SEEEEEE-TT--EE
T ss_pred cccccccccceeccccceEEcCC-CCeEEEEECCCCeEEEECC-CCCEEEEEEeCCcccCcccccCCccEEEECCCCCEE
Confidence 1124456788888875 4567777778888888884 344333322222 257899999999766
Q ss_pred EEe
Q 001184 557 FSC 559 (1130)
Q Consensus 557 ~~~ 559 (1130)
++.
T Consensus 237 Ivs 239 (248)
T PF06977_consen 237 IVS 239 (248)
T ss_dssp EEE
T ss_pred EEc
Confidence 664
No 354
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.75 E-value=0.00059 Score=76.49 Aligned_cols=150 Identities=11% Similarity=0.125 Sum_probs=101.1
Q ss_pred eEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEE-EecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCccccee
Q 001184 877 STFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTK-LKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSI 955 (1130)
Q Consensus 877 i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~-l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~ 955 (1130)
+.--+++. .+.+++.|+.-|.+++|+-..++.... ..+-.+.+.....|++..++|.|+..|.|.++-+.........
T Consensus 36 v~lTc~ds-t~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~ 114 (726)
T KOG3621|consen 36 VKLTCVDA-TEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLD 114 (726)
T ss_pred EEEEEeec-CCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcce
Confidence 33334455 678999999999999999888765433 3344566777788999999999999999999998885544444
Q ss_pred eEeccCCCCCCCeEEEEEcCCCcEEEEEc-CCcEEEEECCCc-eeeeeeecCCCCCCCeEEEEECCCCCEEEEEe
Q 001184 956 AIQLPAGKLPVGETRVQFHSDQVRLLVNH-ETQLAIYDGSKM-ECIRQWVPQDVLSSPISSAAYSCNSQLIYATF 1028 (1130)
Q Consensus 956 ~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-d~~i~v~d~~~~-~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~ 1028 (1130)
........++..|++++|++++..+.+|+ .|.|..-.+..- ........-....++|..+.+. ++.+|++..
T Consensus 115 ~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVStl 188 (726)
T KOG3621|consen 115 YVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVSTL 188 (726)
T ss_pred eeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHhhh
Confidence 44433344568999999999999999975 567777666651 1110000011125677777765 344444444
No 355
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.75 E-value=1.2e-05 Score=88.16 Aligned_cols=205 Identities=14% Similarity=0.185 Sum_probs=132.7
Q ss_pred CCCCEEEEEEecCCC-eEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcC-CCCE
Q 001184 346 QGSSVVSMDFHPFHH-TLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP-DGNF 423 (1130)
Q Consensus 346 h~~~V~~v~fspdg~-~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~ 423 (1130)
....+.|++++-+.+ -++++|..+|.|-+-.+....-- ...+..+|....++++|++ |...
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----------------s~E~tp~~ar~Ct~lAwneLDtn~ 117 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----------------SAEVTPGYARPCTSLAWNELDTNH 117 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-----------------cceecccccccccccccccccHHH
Confidence 445777887665543 58999999999999887543211 1124668888999999999 7778
Q ss_pred EEEEe----CCCeEEEEEecCCc--cceeeeeeec-CCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEecCC
Q 001184 424 IGVAF----TKHLIHLYTYQGSN--DLCQSLEIDA-HVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGH 496 (1130)
Q Consensus 424 las~~----~d~~i~vwd~~~~~--~~~~~~~~~~-h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~~h 496 (1130)
||.|- .|..+.|||+.++- .... ..+.+ -.....+++|..+.+ ++.+|...+.++++|....+...-.-.
T Consensus 118 LAagldkhrnds~~~Iwdi~s~ltvPke~-~~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs~~~~~svn 194 (783)
T KOG1008|consen 118 LAAGLDKHRNDSSLKIWDINSLLTVPKES-PLFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQSLDSVSSVN 194 (783)
T ss_pred HHhhhhhhcccCCccceecccccCCCccc-cccccccccCccccccccCcc--hhhcccccchhhhhhhhhhhhhhhhhh
Confidence 88873 35679999998862 1111 11222 334567899998888 789999999999999544333332223
Q ss_pred CcCEEEEeecccCCccEEEEEecCCcEEEEE-ccCCcceeeecCCC-----ccEEEEEEecCCC-eEEEeeecCCCCcEE
Q 001184 497 EAPVYSVCPHQKENIHFIFSTAVDGKIKAWL-YDNVGSRVDYDAPG-----LWCTTMLYSADGS-RLFSCGTSKEGDSHL 569 (1130)
Q Consensus 497 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd-~~~~~~~~~~~~~~-----~~v~~~~~s~~~~-~l~~~~~~~~~~~~i 569 (1130)
+..+..+.+.|- .++++++-. ||.|.+|| ..+.+..+....+. ..+..++|+|... .+++... ..++|
T Consensus 195 Tk~vqG~tVdp~-~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~R---dS~tI 269 (783)
T KOG1008|consen 195 TKYVQGITVDPF-SPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSR---DSITI 269 (783)
T ss_pred hhhcccceecCC-CCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhcc---CcceE
Confidence 344555555541 224665554 99999999 44444333221121 2488999999654 3444443 37889
Q ss_pred EEeeCC
Q 001184 570 VEWNES 575 (1130)
Q Consensus 570 ~~wd~~ 575 (1130)
+++|+.
T Consensus 270 rlydi~ 275 (783)
T KOG1008|consen 270 RLYDIC 275 (783)
T ss_pred EEeccc
Confidence 999874
No 356
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.74 E-value=0.014 Score=65.97 Aligned_cols=186 Identities=9% Similarity=0.110 Sum_probs=101.5
Q ss_pred CceeEEEEecCCCEEEEEeCCeEEEEECCCceeEEEEe-------CCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeec
Q 001184 834 DVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFM-------SPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRV 906 (1130)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~-------~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~ 906 (1130)
+.+.++.|+.+..+++...||.+++||+.... ...+. .....+.+..+.. +|-.+ -..++.+++.+--.
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~-~Givv--Lt~~~~~~~v~n~~ 156 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYK-NGIVV--LTGNNRFYVVNNID 156 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCC-CCEEE--ECCCCeEEEEeCcc
Confidence 78999999999999998889999999987443 11111 1112222223333 44333 33445554432222
Q ss_pred Ce-EEEEE---ec-----CCC-CeeE-EEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcC
Q 001184 907 DE-VKTKL---KG-----HQK-HITG-LAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHS 975 (1130)
Q Consensus 907 ~~-~~~~l---~~-----h~~-~V~~-l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 975 (1130)
.. ....+ .. |.- .+.. ..++.+....+....++.+.+-+-...+. . ....++..+++||
T Consensus 157 ~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~-------i---~~~~~i~~iavSp 226 (410)
T PF04841_consen 157 EPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ-------I---DSDGPIIKIAVSP 226 (410)
T ss_pred ccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc-------c---cCCCCeEEEEECC
Confidence 11 11111 11 000 1111 23444555555555555555333322110 1 1125799999999
Q ss_pred CCcEEEE-EcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEe
Q 001184 976 DQVRLLV-NHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFD 1037 (1130)
Q Consensus 976 d~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd 1037 (1130)
+|+++|. ..++.+.+...+-.+.+..+.... ......|.|..+...++.- ...|.+..
T Consensus 227 ng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~--~~~p~~~~WCG~dav~l~~--~~~l~lvg 285 (410)
T PF04841_consen 227 NGKFIALFTDSGNLWVVSSDFSEKLCEFDTDS--KSPPKQMAWCGNDAVVLSW--EDELLLVG 285 (410)
T ss_pred CCCEEEEEECCCCEEEEECcccceeEEeecCc--CCCCcEEEEECCCcEEEEe--CCEEEEEC
Confidence 9999998 677899998877666666655442 3466778887665433333 33444444
No 357
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.73 E-value=0.084 Score=61.94 Aligned_cols=61 Identities=11% Similarity=0.130 Sum_probs=43.6
Q ss_pred CeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecC
Q 001184 854 GKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGH 916 (1130)
Q Consensus 854 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h 916 (1130)
|.|.-+|+.+++..-..+............ .+.+++.++.+|.++.+|.++|+.+-..+-.
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t--~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGVLAT--AGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcceEE--CCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 568889999998887766433222222222 3447777888999999999999999887654
No 358
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.68 E-value=0.0023 Score=71.97 Aligned_cols=196 Identities=15% Similarity=0.114 Sum_probs=116.2
Q ss_pred cceeeecc-CCCCEEEEEEecCCCeEEEEEeCc---CeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEE
Q 001184 338 RAVACTMH-QGSSVVSMDFHPFHHTLLVVGCGD---GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVS 413 (1130)
Q Consensus 338 ~~~~~~~~-h~~~V~~v~fspdg~~llasg~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 413 (1130)
+...+.+. -...+..-+|+|+++.+....-.. ..+.++|+++++...... -.+.-.
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~--------------------~~g~~~ 241 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN--------------------FNGNNG 241 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec--------------------cCCccC
Confidence 44444444 456788889999999744443222 359999999887654211 222334
Q ss_pred EEEEcCCCCEEEEEe-CCC--eEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE--ecCCC
Q 001184 414 RVAWSPDGNFIGVAF-TKH--LIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW--DLSGR 488 (1130)
Q Consensus 414 ~v~~spdg~~las~~-~d~--~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iw--d~~~~ 488 (1130)
.-+|||||++||.+. .|| .|.+.|+.++...+ +..-.+.-..-.|+|||+. ++++.+..|.-.|| |..|.
T Consensus 242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~----Lt~~~gi~~~Ps~spdG~~-ivf~Sdr~G~p~I~~~~~~g~ 316 (425)
T COG0823 242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR----LTNGFGINTSPSWSPDGSK-IVFTSDRGGRPQIYLYDLEGS 316 (425)
T ss_pred CccCCCCCCEEEEEECCCCCccEEEEcCCCCccee----cccCCccccCccCCCCCCE-EEEEeCCCCCcceEEECCCCC
Confidence 578999999888764 445 46677777765222 3333333347789999997 45555566654444 56666
Q ss_pred eeeEecCCCcCEEEEeecccCCccEEEEEecC-Cc--EEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeee
Q 001184 489 KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVD-GK--IKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGT 561 (1130)
Q Consensus 489 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d-g~--i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 561 (1130)
....+....+.-..-. .++||.+++..+.. |. |.+.|+.+... ............-.+.++|+.+...+.
T Consensus 317 ~~~riT~~~~~~~~p~--~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 317 QVTRLTFSGGGNSNPV--WSPDGDKIVFESSSGGQWDIDKNDLASGGK-IRILTSTYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred ceeEeeccCCCCcCcc--CCCCCCEEEEEeccCCceeeEEeccCCCCc-EEEccccccCCCCCcCCCCceEEEecc
Confidence 6555543333222333 35677777776643 44 55555555443 222222333445667888888877653
No 359
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.67 E-value=0.019 Score=63.93 Aligned_cols=240 Identities=12% Similarity=0.147 Sum_probs=134.4
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccc----------------------------------------eeeeee
Q 001184 411 SVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDL----------------------------------------CQSLEI 450 (1130)
Q Consensus 411 ~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~----------------------------------------~~~~~~ 450 (1130)
.|+.+.|+++..-||+|...|.|.||.....+.. .+..-+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 5889999999999999999999999877432111 111123
Q ss_pred ecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCee-eE--ecC------CCcCEEEEeec---ccCCc---cEEE
Q 001184 451 DAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKL-FQ--FEG------HEAPVYSVCPH---QKENI---HFIF 515 (1130)
Q Consensus 451 ~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~-~~--~~~------h~~~v~~~~~~---~~~~~---~~l~ 515 (1130)
+...++|++++.|.-| +++.|..+|.+.|.|..|..+ +. +.. ....|+++.|. ...|+ -.++
T Consensus 83 ~~~~g~vtal~~S~iG---Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIG---FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp ---S-SEEEEEE-BTS---EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eccCCcEeEEecCCCc---EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 3446889999998666 799999999999999766544 22 122 23457777765 22333 5788
Q ss_pred EEecCCcEEEEEccC-Cccee------eecCCCccEEEEE-EecC---------------------CCeEEEeeecCCCC
Q 001184 516 STAVDGKIKAWLYDN-VGSRV------DYDAPGLWCTTML-YSAD---------------------GSRLFSCGTSKEGD 566 (1130)
Q Consensus 516 s~s~dg~i~vwd~~~-~~~~~------~~~~~~~~v~~~~-~s~~---------------------~~~l~~~~~~~~~~ 566 (1130)
.|...|.+.+|.+.- ....+ ....+..++..+. ++.+ ..++++++ +
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS-----e 234 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS-----E 234 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE------S
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc-----c
Confidence 999999999998752 22211 1113334444444 3222 12445554 6
Q ss_pred cEEEEeeCCCCceeEEEecccCceeEEEEEc-----CCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCC--CCCcceEE
Q 001184 567 SHLVEWNESEGALKRTYIGFRKKSAGVVQFD-----TTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGG--LPSLPRLR 639 (1130)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~--~~~i~~v~ 639 (1130)
..++++...+.+....... .......+++- ..+..|++-..+|.+++|.+..-+.+........ ...+....
T Consensus 235 ~~irv~~~~~~k~~~K~~~-~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ss 313 (395)
T PF08596_consen 235 SDIRVFKPPKSKGAHKSFD-DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSS 313 (395)
T ss_dssp SEEEEE-TT---EEEEE-S-S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-E
T ss_pred cceEEEeCCCCcccceeec-cccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccE
Confidence 7899999887776555442 11123334442 2455788888999999999999998888776431 11355677
Q ss_pred EcCCCCEEEEEeCCCcEEEEE
Q 001184 640 FNKEGNLLVVTTADQGIKILA 660 (1130)
Q Consensus 640 ~s~~~~~l~~~~~dg~i~iw~ 660 (1130)
++++|..++..+.. .+.++.
T Consensus 314 is~~Gdi~~~~gps-E~~l~s 333 (395)
T PF08596_consen 314 ISRNGDIFYWTGPS-EIQLFS 333 (395)
T ss_dssp E-TTS-EEEE-SSS-EEEEEE
T ss_pred ECCCCCEEEEeCcc-cEEEEE
Confidence 88888877666443 344443
No 360
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.65 E-value=0.094 Score=61.53 Aligned_cols=148 Identities=9% Similarity=0.086 Sum_probs=88.4
Q ss_pred cEEEEEeecCeEEEEEecCCCCeeE---------EEEccCCC---eEEEEeCCCcEEEEECCCCcccceeeE--------
Q 001184 898 TIQIYNVRVDEVKTKLKGHQKHITG---------LAFSTNLN---ILVSSGSDAQLIFWNTDTWEKRKSIAI-------- 957 (1130)
Q Consensus 898 ~v~iwd~~~~~~~~~l~~h~~~V~~---------l~~s~dg~---~L~s~s~Dg~i~vwd~~~~~~~~~~~~-------- 957 (1130)
+|.-.|++||+..-.++.....++. +....+|+ .++.+..+|.+.+.|..+++.......
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~ 351 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWAT 351 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCccccc
Confidence 5667788899988776643222222 22224666 788999999999999999876321000
Q ss_pred ec--cCC---------------CC-----C-----CCeEEEEEcCCCcEEEEE-c-------------------------
Q 001184 958 QL--PAG---------------KL-----P-----VGETRVQFHSDQVRLLVN-H------------------------- 984 (1130)
Q Consensus 958 ~~--~~~---------------~~-----~-----~~v~~~~~s~d~~~l~~~-~------------------------- 984 (1130)
.. ..+ .. + ..-...+++|+..++++. .
T Consensus 352 ~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~ 431 (527)
T TIGR03075 352 GVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLT 431 (527)
T ss_pred ccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccc
Confidence 00 000 00 0 001125666666655541 1
Q ss_pred --------CCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCC
Q 001184 985 --------ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAP 1049 (1130)
Q Consensus 985 --------d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~ 1049 (1130)
-+.+.-+|+.+|+..-....... ...+. +.-.|.+++.++.||.++.+|.++|+.+.+++.
T Consensus 432 ~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p---~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 432 IKPPPDDHMGSLIAWDPITGKIVWEHKEDFP---LWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred cCCCCCCCceeEEEEeCCCCceeeEecCCCC---CCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence 13477788888887766543311 11111 222556777788899999999999999988764
No 361
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=0.016 Score=65.30 Aligned_cols=211 Identities=14% Similarity=0.142 Sum_probs=148.5
Q ss_pred CceeEEEEecCCCEEEEEe--CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeC---CCcEEEEEeecCe
Q 001184 834 DVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGME---DSTIQIYNVRVDE 908 (1130)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~---dg~v~iwd~~~~~ 908 (1130)
..-..+++++++..+.... ++.|.+.|..+.+......... ....++++| ++..+.++.. ++++.+.|..+.+
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~ 151 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNK 151 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECC-CCCEEEEEecccCCceEEEEeCCCCe
Confidence 3345788889988666555 6889999988877777665322 677899999 5555555544 6889999999998
Q ss_pred EEEEEecCCCCeeEEEEccCCCeEEEEe-CCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEc---
Q 001184 909 VKTKLKGHQKHITGLAFSTNLNILVSSG-SDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH--- 984 (1130)
Q Consensus 909 ~~~~l~~h~~~V~~l~~s~dg~~L~s~s-~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~--- 984 (1130)
.+.....-..+ ..++++|+|+.+..+. .++.|.+.|........ . ..............+.++++|.++.+..
T Consensus 152 ~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~-~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~ 228 (381)
T COG3391 152 VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-G-SVGSLVGVGTGPAGIAVDPDGNRVYVANDGS 228 (381)
T ss_pred EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-c-ccccccccCCCCceEEECCCCCEEEEEeccC
Confidence 88886544445 8999999999766655 78899999977644321 0 0000011124557899999999887732
Q ss_pred -CCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeC-CCcEEEEeCCCcccccccCCCc
Q 001184 985 -ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFT-DGSIGVFDADSLRLRCRIAPSA 1051 (1130)
Q Consensus 985 -d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~-Dg~i~vwd~~~~~~~~~~~~~~ 1051 (1130)
++.+...|..++.....-..... . ....+.++|+|+.+.+... .+.+.+-|..+......+....
T Consensus 229 ~~~~v~~id~~~~~v~~~~~~~~~-~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~ 295 (381)
T COG3391 229 GSNNVLKIDTATGNVTATDLPVGS-G-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGN 295 (381)
T ss_pred CCceEEEEeCCCceEEEecccccc-C-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccc
Confidence 25888999998887766322211 2 4567899999999988854 4889999999888776655433
No 362
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.64 E-value=0.025 Score=58.31 Aligned_cols=202 Identities=11% Similarity=0.095 Sum_probs=113.7
Q ss_pred CCCCceeEEEEecCCCEEEEEe--CCeEEEEECCCceeEEEEeCC-CCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecC
Q 001184 831 NAEDVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSP-PPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVD 907 (1130)
Q Consensus 831 ~~~~~i~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~-~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~ 907 (1130)
+-...+..++++|+.+.|++.. .+.|..++. +|+.++.+... .+..-.+++.. ++.++++.-.++.+.++++...
T Consensus 19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~~~~ 96 (248)
T PF06977_consen 19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFTIDDD 96 (248)
T ss_dssp T--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEEE---
T ss_pred CccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEEEecc
Confidence 3455699999999877665555 577888887 47888887643 35678889987 7777776666899999998432
Q ss_pred ------eEEEEEe-----cCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCC---CcccceeeE-ecc-CCCCCCCeEEE
Q 001184 908 ------EVKTKLK-----GHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDT---WEKRKSIAI-QLP-AGKLPVGETRV 971 (1130)
Q Consensus 908 ------~~~~~l~-----~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~---~~~~~~~~~-~~~-~~~~~~~v~~~ 971 (1130)
.....+. .+...+-.|+|.+.++.|+.+-...-..++.+.. ......... ... ....-..+..+
T Consensus 97 ~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l 176 (248)
T PF06977_consen 97 TTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGL 176 (248)
T ss_dssp -TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EE
T ss_pred ccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccce
Confidence 1112221 2445689999999988888887777777777664 111111110 011 11112457889
Q ss_pred EEcCCCcEEEE-E-cCCcEEEEECCCceeeeeeecCCCC------CCCeEEEEECCCCCEEEEEeCCCcEEEE
Q 001184 972 QFHSDQVRLLV-N-HETQLAIYDGSKMECIRQWVPQDVL------SSPISSAAYSCNSQLIYATFTDGSIGVF 1036 (1130)
Q Consensus 972 ~~s~d~~~l~~-~-~d~~i~v~d~~~~~~~~~~~~~~~~------~~~v~~v~~s~dg~~l~t~~~Dg~i~vw 1036 (1130)
.++|....|.+ + .+..+.++| .+|+.+..+.-..+. -..--.|+|.++|.+.+ .++-+..+++
T Consensus 177 ~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI-vsEpNlfy~f 247 (248)
T PF06977_consen 177 SYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI-VSEPNLFYRF 247 (248)
T ss_dssp EEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE-EETTTEEEEE
T ss_pred EEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE-EcCCceEEEe
Confidence 99987654444 5 467788888 667776655443211 12467899999996544 4566666655
No 363
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.55 E-value=0.0067 Score=72.11 Aligned_cols=149 Identities=15% Similarity=0.122 Sum_probs=102.2
Q ss_pred CCcEEEEE-eCCCcEEEEEeecCeEEEEEecCCCC-eeEEEEcc-----CCCeEEEEeCCCcEEEEECCCCcccceeeEe
Q 001184 886 DNNIIAIG-MEDSTIQIYNVRVDEVKTKLKGHQKH-ITGLAFST-----NLNILVSSGSDAQLIFWNTDTWEKRKSIAIQ 958 (1130)
Q Consensus 886 ~~~~lasg-~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~s~-----dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~ 958 (1130)
+..+|+.. .....|+-.|++.|+.+..+..|... |..++-.. +...-+.|-.+..+..||..-... .....+
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~-k~v~~~ 570 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN-KLVDSQ 570 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCC-ceeecc
Confidence 44454443 45678999999999999999988754 55443321 123445566677899999876331 111111
Q ss_pred ccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeC
Q 001184 959 LPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDA 1038 (1130)
Q Consensus 959 ~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~ 1038 (1130)
..........++++-+.+|.+++.+.+|.||+||-- |..-++..+ +.+.+|.+|+.+.||++|++.+ +..+.+++.
T Consensus 571 ~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~-g~~AKT~lp--~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 571 SKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRL-GKRAKTALP--GLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred ccccccCCCceEEEecCCceEEEEeCCCcEEeeccc-chhhhhcCC--CCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 222233467899999999998888999999999954 333333322 2278999999999999999888 678888875
Q ss_pred C
Q 001184 1039 D 1039 (1130)
Q Consensus 1039 ~ 1039 (1130)
.
T Consensus 647 ~ 647 (794)
T PF08553_consen 647 L 647 (794)
T ss_pred e
Confidence 3
No 364
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.50 E-value=0.0074 Score=67.94 Aligned_cols=191 Identities=16% Similarity=0.141 Sum_probs=113.8
Q ss_pred cCCCccEEEEEEcCCCCEEEEEe---CC-CeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEE
Q 001184 406 KDSSISVSRVAWSPDGNFIGVAF---TK-HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIR 481 (1130)
Q Consensus 406 ~~h~~~V~~v~~spdg~~las~~---~d-~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~ 481 (1130)
..-...+..-+|+|+++.++..+ .. ..+.++|+.+++.... ..+.++ -...+|+|||+. ++++...|+...
T Consensus 189 ~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i-~~~~g~---~~~P~fspDG~~-l~f~~~rdg~~~ 263 (425)
T COG0823 189 TDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVI-LNFNGN---NGAPAFSPDGSK-LAFSSSRDGSPD 263 (425)
T ss_pred cccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCcccee-eccCCc---cCCccCCCCCCE-EEEEECCCCCcc
Confidence 34455677889999999877653 22 4699999999875432 233444 456799999997 566777777655
Q ss_pred E--EecCCCeeeEecCCCcCEEEEeecccCCccEEEEE-ecCCcEEEE--EccCCcceeeecCCCccEEEEEEecCCCeE
Q 001184 482 V--WDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFST-AVDGKIKAW--LYDNVGSRVDYDAPGLWCTTMLYSADGSRL 556 (1130)
Q Consensus 482 i--wd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-s~dg~i~vw--d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 556 (1130)
| .|..++.+..+..-.+.-..-.| +++|+.++-. +..|.-.|| +.+..... .+......-..-.++|||+++
T Consensus 264 iy~~dl~~~~~~~Lt~~~gi~~~Ps~--spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~-riT~~~~~~~~p~~SpdG~~i 340 (425)
T COG0823 264 IYLMDLDGKNLPRLTNGFGINTSPSW--SPDGSKIVFTSDRGGRPQIYLYDLEGSQVT-RLTFSGGGNSNPVWSPDGDKI 340 (425)
T ss_pred EEEEcCCCCcceecccCCccccCccC--CCCCCEEEEEeCCCCCcceEEECCCCCcee-EeeccCCCCcCccCCCCCCEE
Confidence 5 55666666555533332223334 4566666655 445554555 55444432 222222222377899999999
Q ss_pred EEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEe
Q 001184 557 FSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAG 607 (1130)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 607 (1130)
+..+.. .+.-.|.+.|+.++..++.+.... ....-.+.+++..++..+
T Consensus 341 ~~~~~~-~g~~~i~~~~~~~~~~~~~lt~~~--~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 341 VFESSS-GGQWDIDKNDLASGGKIRILTSTY--LNESPSWAPNGRMIMFSS 388 (425)
T ss_pred EEEecc-CCceeeEEeccCCCCcEEEccccc--cCCCCCcCCCCceEEEec
Confidence 998742 223457777777666444443211 233355777777666544
No 365
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.00076 Score=70.85 Aligned_cols=111 Identities=10% Similarity=0.112 Sum_probs=88.8
Q ss_pred HHHHHHHHHhhhhccHHHHHHHHHHhcCCCcc----------HHHHHHHHhccCHHHHHHHhccCCCcCCCccchhhhHH
Q 001184 6 RELVFLILQFLDEEKFKESVHRLEQESGFFFN----------MKYFEEKALAGEWDEIEKYLSGFTKVDDNRYSMKIFFE 75 (1130)
Q Consensus 6 ~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~----------~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~ 75 (1130)
+.+..+|..++...|..+.+..|-+|||...+ +.++-++|..|+-.-|++.+.......... ...+.|.
T Consensus 117 ~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~-~s~LE~~ 195 (394)
T KOG2817|consen 117 QVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEK-SSSLEFK 195 (394)
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhccc-cccHHHH
Confidence 33689999999999999999999999998752 678999999999999999987652111111 2248999
Q ss_pred HHHhHHHHHHhcCCHH--HHHHHHHhhcccccccCHHHHHHHHH
Q 001184 76 IRKQKYLEALDRHDRA--KAVEILVKDLKVFSTFNEELFKEITQ 117 (1130)
Q Consensus 76 i~~~~~lell~~~~~~--~a~~~l~~~~~~~~~~~~~~~~~l~~ 117 (1130)
+..+.|++++..|... +|+...|+.++|+.......++.|-.
T Consensus 196 Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQklm~ 239 (394)
T KOG2817|consen 196 LHSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQKLMG 239 (394)
T ss_pred HHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHHHHHH
Confidence 9999999999999888 99999999999996544444444433
No 366
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.45 E-value=0.14 Score=57.79 Aligned_cols=258 Identities=12% Similarity=0.136 Sum_probs=161.7
Q ss_pred ccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCE
Q 001184 344 MHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNF 423 (1130)
Q Consensus 344 ~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 423 (1130)
+.-......+++.|+|..+.++-.....+.+-+........ ....-...-..++.++++..
T Consensus 27 ~~~~~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~-------------------~~~~g~~~p~~i~v~~~~~~ 87 (381)
T COG3391 27 ISLGRGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQ-------------------SLSVGGVYPAGVAVNPAGNK 87 (381)
T ss_pred eecCCCCceeEEcCccCEEEEEeecCceeeecccccceeee-------------------eccCCCccccceeeCCCCCe
Confidence 33333677888899996555554333344444443111110 01111134567899999885
Q ss_pred EE-EEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEc-CCCcEEEEe-cCCCeeeEecCCCcCE
Q 001184 424 IG-VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCG-DDKLIRVWD-LSGRKLFQFEGHEAPV 500 (1130)
Q Consensus 424 la-s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s-~d~~v~iwd-~~~~~~~~~~~h~~~v 500 (1130)
+. ....+..|.+.|..+.+..... ..+. ....++++++++.++++-.. .++++.+.| .+++.+.....-..+
T Consensus 88 vyv~~~~~~~v~vid~~~~~~~~~~--~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P- 162 (381)
T COG3391 88 VYVTTGDSNTVSVIDTATNTVLGSI--PVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP- 162 (381)
T ss_pred EEEecCCCCeEEEEcCcccceeeEe--eecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-
Confidence 54 4445688999997776544321 1222 57789999999864333333 479999999 778777775433334
Q ss_pred EEEeecccCCccEEE-EEecCCcEEEEEccCCccee-e---ecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCC
Q 001184 501 YSVCPHQKENIHFIF-STAVDGKIKAWLYDNVGSRV-D---YDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES 575 (1130)
Q Consensus 501 ~~~~~~~~~~~~~l~-s~s~dg~i~vwd~~~~~~~~-~---~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1130)
..+++.+ ++..++ +-..+++|.+.|........ . ..........+.++|+|.++.+.-. .+.++.+...|..
T Consensus 163 ~~~a~~p--~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~-~~~~~~v~~id~~ 239 (381)
T COG3391 163 TGVAVDP--DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVAND-GSGSNNVLKIDTA 239 (381)
T ss_pred ceEEECC--CCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEec-cCCCceEEEEeCC
Confidence 6777754 445444 44578999999966543332 0 1122234567899999998777653 1223689999998
Q ss_pred CCceeEE-EecccCceeEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCceeEEEecc
Q 001184 576 EGALKRT-YIGFRKKSAGVVQFDTTRNRILAAGE-DNQIKFWDMDNVNMLTSTEAE 629 (1130)
Q Consensus 576 ~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~ 629 (1130)
++..... +..... ....+.++|+|+.+.+... .+.+.+-|..+..........
T Consensus 240 ~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~ 294 (381)
T COG3391 240 TGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTG 294 (381)
T ss_pred CceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeeccc
Confidence 8877665 332222 3455789999998888744 488999999888777765443
No 367
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.41 E-value=0.0075 Score=70.96 Aligned_cols=189 Identities=11% Similarity=0.061 Sum_probs=106.0
Q ss_pred CceeEEEEecCCCEEEEEe-------CC--eEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCC--------
Q 001184 834 DVVPCVALSKNDSYVMSAG-------GG--KVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMED-------- 896 (1130)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~-------dg--~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~d-------- 896 (1130)
..+...++||||+.++... |. .|.+++.. +.. ..+.. ....+.-.|+| ++..|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSWSL-DADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceECC-CCCceEEEecCcceEEEec
Confidence 4678899999999887654 32 46666653 333 33322 22478899999 66655555322
Q ss_pred ----CcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEE---EECCCCcccceeeEeccCCCCCCCeE
Q 001184 897 ----STIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIF---WNTDTWEKRKSIAIQLPAGKLPVGET 969 (1130)
Q Consensus 897 ----g~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~v---wd~~~~~~~~~~~~~~~~~~~~~~v~ 969 (1130)
+.+++.++..++... ...+.|..+.|||||.+++... ++.|++ -....++........+.. .....+.
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~-~l~~~~~ 500 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGP-GLGDTAV 500 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeec-ccCCccc
Confidence 233333444443322 2346799999999999988776 477777 444444322211222211 1223457
Q ss_pred EEEEcCCCcEEEEEcCCcEEEEECCC-ceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEE
Q 001184 970 RVQFHSDQVRLLVNHETQLAIYDGSK-MECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIG 1034 (1130)
Q Consensus 970 ~~~~s~d~~~l~~~~d~~i~v~d~~~-~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~ 1034 (1130)
++.|..++.+++...+....+|.+.- |.....+ .......++.+++=+++ .|+.+..+|.+.
T Consensus 501 ~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~-~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 501 SLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDAL-PSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred cceEecCCEEEEEecCCCCceEEEecCCcccccc-CCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 89999999977654433344444432 2222221 22222457777777753 355555566433
No 368
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.41 E-value=0.025 Score=60.58 Aligned_cols=185 Identities=15% Similarity=0.088 Sum_probs=112.1
Q ss_pred eEEEEecCCCEEEEEeCCeEEEEECCCceeEEEEeC-----CCCCeEEEEEeCCCCcEEEEEeC-----C----CcEEEE
Q 001184 837 PCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMS-----PPPASTFLAFHPQDNNIIAIGME-----D----STIQIY 902 (1130)
Q Consensus 837 ~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~-----~~~~i~~l~~sp~~~~~lasg~~-----d----g~v~iw 902 (1130)
.++..-.++..|+++ +..+.+++.+++..+..+.. .....+.+.+.| +|.+.+.... . ..=.||
T Consensus 69 ~~~~~~d~~g~Lv~~-~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~ly 146 (307)
T COG3386 69 SSGALIDAGGRLIAC-EHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLY 146 (307)
T ss_pred ccceeecCCCeEEEE-ccccEEEeccCCceeEEeccccCCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEE
Confidence 444443344444443 44456666665555333321 123456778888 6776665444 1 112466
Q ss_pred Eee-cCeEEEEEecCCCCeeEEEEccCCCeEEEEeCC-CcEEEEECCC--CcccceeeEeccCCCCCCCeEEEEEcCCCc
Q 001184 903 NVR-VDEVKTKLKGHQKHITGLAFSTNLNILVSSGSD-AQLIFWNTDT--WEKRKSIAIQLPAGKLPVGETRVQFHSDQV 978 (1130)
Q Consensus 903 d~~-~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~D-g~i~vwd~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~ 978 (1130)
.+. .+..+..+..|-..-++|+||||++.|..+... +.|.-|++.. +.......... ....+...-.++...+|.
T Consensus 147 r~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~-~~~~~G~PDG~~vDadG~ 225 (307)
T COG3386 147 RVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVD-FDEEPGLPDGMAVDADGN 225 (307)
T ss_pred EEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEE-ccCCCCCCCceEEeCCCC
Confidence 665 566666677666666889999999888877664 7788887763 22111111111 111335566788888999
Q ss_pred EEEEEc-C-CcEEEEECCCceeeeeeecCCCCCCCeEEEEEC-CCCCEEEEEe
Q 001184 979 RLLVNH-E-TQLAIYDGSKMECIRQWVPQDVLSSPISSAAYS-CNSQLIYATF 1028 (1130)
Q Consensus 979 ~l~~~~-d-~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s-~dg~~l~t~~ 1028 (1130)
+.++.. + +.|.+|+.. |+.+..+..+ ...+++++|- ++.+.|+..+
T Consensus 226 lw~~a~~~g~~v~~~~pd-G~l~~~i~lP---~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 226 LWVAAVWGGGRVVRFNPD-GKLLGEIKLP---VKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred EEEecccCCceEEEECCC-CcEEEEEECC---CCCCccceEeCCCcCEEEEEe
Confidence 886543 3 389999999 9998888776 3678888884 4556555555
No 369
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.36 E-value=0.09 Score=56.61 Aligned_cols=233 Identities=15% Similarity=0.144 Sum_probs=133.9
Q ss_pred ccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEeCCeE
Q 001184 777 NSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKV 856 (1130)
Q Consensus 777 ~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i 856 (1130)
..++.|+.|.++| +.++++... ..... + .+...|..+...++-+.+++-+|+.+
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~---------------------~~~~~--i--~~~~~I~ql~vl~~~~~llvLsd~~l 58 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDP---------------------SKPTR--I--LKLSSITQLSVLPELNLLLVLSDGQL 58 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCC---------------------cccee--E--eecceEEEEEEecccCEEEEEcCCcc
Confidence 4577889998888 777765110 00000 0 12334999999999999998899999
Q ss_pred EEEECCCceeEEEE--------------eCCCCCeEEEE--EeCCCCcEEEEEeCCCcEEEEEeecC-----eEEEEEec
Q 001184 857 SLFNMMNFKVMTTF--------------MSPPPASTFLA--FHPQDNNIIAIGMEDSTIQIYNVRVD-----EVKTKLKG 915 (1130)
Q Consensus 857 ~iwd~~~~~~~~~~--------------~~~~~~i~~l~--~sp~~~~~lasg~~dg~v~iwd~~~~-----~~~~~l~~ 915 (1130)
.++++......... ......+...+ -...+...|+++.. ..|.+|..... +....+.-
T Consensus 59 ~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~k-k~i~i~~~~~~~~~f~~~~ke~~l 137 (275)
T PF00780_consen 59 YVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVK-KKILIYEWNDPRNSFSKLLKEISL 137 (275)
T ss_pred EEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEEC-CEEEEEEEECCcccccceeEEEEc
Confidence 99998765444311 11223344444 11224456665544 48999888753 34455543
Q ss_pred CCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccC-----CCCCCCeEEEEEcCCCcEEEEEcCCcEEE
Q 001184 916 HQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPA-----GKLPVGETRVQFHSDQVRLLVNHETQLAI 990 (1130)
Q Consensus 916 h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~s~d~~~l~~~~d~~i~v 990 (1130)
.+.+.+++|. ++.++.+..++ ..+.|+.++............ .........+.--+++.+|++.+ . +-+
T Consensus 138 -p~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~~-~-~g~ 211 (275)
T PF00780_consen 138 -PDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCYD-N-IGV 211 (275)
T ss_pred -CCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEec-c-eEE
Confidence 4778999998 55777777555 788899975542221111100 00011222333334456666533 2 333
Q ss_pred EECCCceeee-eeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccC
Q 001184 991 YDGSKMECIR-QWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIA 1048 (1130)
Q Consensus 991 ~d~~~~~~~~-~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~ 1048 (1130)
|=-..|+..+ ..... .....++++. ..||++.+. +.|.||++.+++++..+.
T Consensus 212 fv~~~G~~~r~~~i~W---~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~ 264 (275)
T PF00780_consen 212 FVNKNGEPSRKSTIQW---SSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIP 264 (275)
T ss_pred EEcCCCCcCcccEEEc---CCchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEE
Confidence 3223444333 22222 3355566663 558887764 569999999999877765
No 370
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.34 E-value=0.00012 Score=80.63 Aligned_cols=207 Identities=17% Similarity=0.200 Sum_probs=133.1
Q ss_pred CeEEEEEeCC-CCcEEEEEeCCCcEEEEEeecCeE--EEEEecCCCCeeEEEEcc-CCCeEEEEe----CCCcEEEEECC
Q 001184 876 ASTFLAFHPQ-DNNIIAIGMEDSTIQIYNVRVDEV--KTKLKGHQKHITGLAFST-NLNILVSSG----SDAQLIFWNTD 947 (1130)
Q Consensus 876 ~i~~l~~sp~-~~~~lasg~~dg~v~iwd~~~~~~--~~~l~~h~~~V~~l~~s~-dg~~L~s~s----~Dg~i~vwd~~ 947 (1130)
.+.|++..-+ +..++++|..+|.|-+-.+....- -....+|....++++|++ |.++||.|- .|..+.|||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 3455554442 346899999999999887764322 244567888999999988 445666652 36779999999
Q ss_pred CCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE-cCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECC-CCCEEE
Q 001184 948 TWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSC-NSQLIY 1025 (1130)
Q Consensus 948 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~-dg~~l~ 1025 (1130)
+.-........+.. .......+++|-.+.+.+.+| ..+.+.++|++.......... ...+..+.++| .+.|++
T Consensus 138 s~ltvPke~~~fs~-~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn----Tk~vqG~tVdp~~~nY~c 212 (783)
T KOG1008|consen 138 SLLTVPKESPLFSS-STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN----TKYVQGITVDPFSPNYFC 212 (783)
T ss_pred cccCCCcccccccc-ccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh----hhhcccceecCCCCCcee
Confidence 85211111111111 122456688888888888885 567899999884322221111 23667788888 777887
Q ss_pred EEeCCCcEEEEe-CCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCC-cEEEEeCCC
Q 001184 1026 ATFTDGSIGVFD-ADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDG-SVKVIEPSE 1094 (1130)
Q Consensus 1026 t~~~Dg~i~vwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg-~v~vW~~~~ 1094 (1130)
+-. ||.|.+|| ..+-+-......+. ..........++|.|....++++...|. +|+++++..
T Consensus 213 s~~-dg~iAiwD~~rnienpl~~i~~~------~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 213 SNS-DGDIAIWDTYRNIENPLQIILRN------ENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred ccc-cCceeeccchhhhccHHHHHhhC------CCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 666 99999999 44333222221111 1122233667999998888899988864 788998863
No 371
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.33 E-value=0.0071 Score=65.77 Aligned_cols=147 Identities=13% Similarity=0.112 Sum_probs=104.8
Q ss_pred cEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCe-------EEEEeCCCcEEEEECCCCcccceeeEecc
Q 001184 888 NIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNI-------LVSSGSDAQLIFWNTDTWEKRKSIAIQLP 960 (1130)
Q Consensus 888 ~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~-------L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~ 960 (1130)
.+|.++.....++-.|++.|+.+..++-|.+ |+-+.+.||.+. -+.|-.|..|.-||..-...-.....+..
T Consensus 347 lil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~k 425 (644)
T KOG2395|consen 347 LILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSK 425 (644)
T ss_pred eEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecc
Confidence 4555666667788999999999999998877 888888887542 22344577899999874322112222222
Q ss_pred CCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 001184 961 AGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDAD 1039 (1130)
Q Consensus 961 ~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~ 1039 (1130)
.........|++-..+|..++.+.+|.|++||- .+..-++..+. ...+|..+..+.||++|++.+ +.++.+-++.
T Consensus 426 qy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPg--LG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 426 QYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPG--LGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred ccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccc--cCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 223336778888889998888899999999998 44444433332 278999999999999999877 6677777654
No 372
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.30 E-value=0.059 Score=54.23 Aligned_cols=241 Identities=12% Similarity=0.126 Sum_probs=135.3
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCe-EEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGE-ITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 424 (1130)
-...-..++|+|.-.+-++.+-.-|+ ..++|.++++...... ..... -+-+| =.|||||.+|
T Consensus 66 lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~----------s~~~R-HfyGH------Gvfs~dG~~L 128 (366)
T COG3490 66 LPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLV----------SQEGR-HFYGH------GVFSPDGRLL 128 (366)
T ss_pred cccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEe----------cccCc-eeecc------cccCCCCcEE
Confidence 33445568899987766676666665 5788988776543100 00011 13345 3599999999
Q ss_pred EEEeCC-----CeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcC------------------CCcEE
Q 001184 425 GVAFTK-----HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD------------------DKLIR 481 (1130)
Q Consensus 425 as~~~d-----~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~------------------d~~v~ 481 (1130)
...-.| |.|-|||...+ +...-++..|.-.-..+.|.+||+ .++.+.. .-++.
T Consensus 129 YATEndfd~~rGViGvYd~r~~--fqrvgE~~t~GiGpHev~lm~DGr--tlvvanGGIethpdfgR~~lNldsMePSlv 204 (366)
T COG3490 129 YATENDFDPNRGVIGVYDAREG--FQRVGEFSTHGIGPHEVTLMADGR--TLVVANGGIETHPDFGRTELNLDSMEPSLV 204 (366)
T ss_pred EeecCCCCCCCceEEEEecccc--cceecccccCCcCcceeEEecCCc--EEEEeCCceecccccCccccchhhcCccEE
Confidence 876333 78999999854 455567888888889999999999 4444421 11344
Q ss_pred EEe-cCCCeeeEe--c--CCCcCEEEEeecccCCccEEEEEecCCc-----EEEEEccCCcceeeecCC-------CccE
Q 001184 482 VWD-LSGRKLFQF--E--GHEAPVYSVCPHQKENIHFIFSTAVDGK-----IKAWLYDNVGSRVDYDAP-------GLWC 544 (1130)
Q Consensus 482 iwd-~~~~~~~~~--~--~h~~~v~~~~~~~~~~~~~l~s~s~dg~-----i~vwd~~~~~~~~~~~~~-------~~~v 544 (1130)
+.| .+|..+.+. . .+.-.|..++.. .|+..++.+-..|. -.+=-...++....+... ...|
T Consensus 205 lld~atG~liekh~Lp~~l~~lSiRHld~g--~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYi 282 (366)
T COG3490 205 LLDAATGNLIEKHTLPASLRQLSIRHLDIG--RDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYI 282 (366)
T ss_pred EEeccccchhhhccCchhhhhcceeeeeeC--CCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhh
Confidence 555 566555332 2 233445555542 33333322221111 000001111111111111 1246
Q ss_pred EEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001184 545 TTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDM 617 (1130)
Q Consensus 545 ~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 617 (1130)
-+++.+.+..+++..+. ..+...+||..+|..+..-.-.. +.-+.+...-+++.+.+|.+.++..
T Consensus 283 gsiA~n~~~glV~lTSP---~GN~~vi~da~tG~vv~~a~l~d-----aaGva~~~~gf~vssg~G~~~~~s~ 347 (366)
T COG3490 283 GSIAANRRDGLVALTSP---RGNRAVIWDAATGAVVSEAALPD-----AAGVAAAKGGFAVSSGQGRIIFYSR 347 (366)
T ss_pred hheeecccCCeEEEecC---CCCeEEEEEcCCCcEEecccccc-----cccceeccCceEEecCCceEEeccc
Confidence 67888777777776653 25678899999998875543211 1222334445666677788887743
No 373
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.29 E-value=0.08 Score=56.76 Aligned_cols=223 Identities=17% Similarity=0.085 Sum_probs=134.1
Q ss_pred EEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeCCCe
Q 001184 353 MDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHL 432 (1130)
Q Consensus 353 v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~~ 432 (1130)
-.|.|+...++.+--..+.|.-|+..+++... +. +.+.+.++..-.++..|+++.. -
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~--------------------~~-~p~~~~~~~~~d~~g~Lv~~~~--g 86 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRV--------------------FP-SPGGFSSGALIDAGGRLIACEH--G 86 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceEE--------------------EE-CCCCcccceeecCCCeEEEEcc--c
Confidence 35777777777777778899999998776542 11 2233455555445555555532 3
Q ss_pred EEEEEecCCccceeeeee-ecC-CCCeeEEEEecCCCceEEEEEcC-----------CCcEEEEecCCCeeeEecCCCcC
Q 001184 433 IHLYTYQGSNDLCQSLEI-DAH-VGGVNDLAFSYPNKQLCIVTCGD-----------DKLIRVWDLSGRKLFQFEGHEAP 499 (1130)
Q Consensus 433 i~vwd~~~~~~~~~~~~~-~~h-~~~V~~i~~s~d~~~l~l~s~s~-----------d~~v~iwd~~~~~~~~~~~h~~~ 499 (1130)
+.+++.+++......... .+. ...-+++...|+|. +.++... -|.|+-.|..+..+..+..+-..
T Consensus 87 ~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~--~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~ 164 (307)
T COG3386 87 VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR--IWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTI 164 (307)
T ss_pred cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC--EEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEe
Confidence 677777655542222111 122 24567889999998 3333222 12344444457777777777777
Q ss_pred EEEEeecccCCccEEEEE-ecCCcEEEEEccC-----Ccc--eeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEE
Q 001184 500 VYSVCPHQKENIHFIFST-AVDGKIKAWLYDN-----VGS--RVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVE 571 (1130)
Q Consensus 500 v~~~~~~~~~~~~~l~s~-s~dg~i~vwd~~~-----~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1130)
-+.++|+|+. +.++.+ +..+.|..|+++. ... ...........-.++...+|.+.+++.. +.+.|..
T Consensus 165 ~NGla~SpDg--~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~---~g~~v~~ 239 (307)
T COG3386 165 PNGLAFSPDG--KTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVW---GGGRVVR 239 (307)
T ss_pred cCceEECCCC--CEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEeccc---CCceEEE
Confidence 7889997654 455544 5558888887762 111 1222233445667788888888764432 1248999
Q ss_pred eeCCCCceeEEEecccCceeEEEEEc-CCCCEEEEEe
Q 001184 572 WNESEGALKRTYIGFRKKSAGVVQFD-TTRNRILAAG 607 (1130)
Q Consensus 572 wd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~ 607 (1130)
|+.. |+++..+.-... .+.+++|. ++.+.|+..+
T Consensus 240 ~~pd-G~l~~~i~lP~~-~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 240 FNPD-GKLLGEIKLPVK-RPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred ECCC-CcEEEEEECCCC-CCccceEeCCCcCEEEEEe
Confidence 9987 888888887644 56666664 4455555544
No 374
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.29 E-value=0.038 Score=55.54 Aligned_cols=238 Identities=16% Similarity=0.121 Sum_probs=140.2
Q ss_pred eeEEEEecCCCE-EEEEe-CCe-EEEEECCCceeEEEEeCCCCC--eEEEEEeCCCCcEEEEEeCC-----CcEEEEEee
Q 001184 836 VPCVALSKNDSY-VMSAG-GGK-VSLFNMMNFKVMTTFMSPPPA--STFLAFHPQDNNIIAIGMED-----STIQIYNVR 905 (1130)
Q Consensus 836 i~~l~~s~dg~~-la~~~-dg~-i~iwd~~~~~~~~~~~~~~~~--i~~l~~sp~~~~~lasg~~d-----g~v~iwd~~ 905 (1130)
...++++|.-.. ++.+- -|+ ..++|..+.+...++....+. .-.=.||| ||.+|...-.| |.|-|||..
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEecc
Confidence 345777775543 33343 355 788999888877776543332 22346999 88888755443 679999998
Q ss_pred cC-eEEEEEecCCCCeeEEEEccCCCeEEEEeCC------------------CcEEEEECCCCcccceeeEeccCCCCCC
Q 001184 906 VD-EVKTKLKGHQKHITGLAFSTNLNILVSSGSD------------------AQLIFWNTDTWEKRKSIAIQLPAGKLPV 966 (1130)
Q Consensus 906 ~~-~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~D------------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~ 966 (1130)
.+ +.+..+..|.-.-..+.+.+||+.|+.+... -++.+-|..+++..... .++......
T Consensus 149 ~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh--~Lp~~l~~l 226 (366)
T COG3490 149 EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKH--TLPASLRQL 226 (366)
T ss_pred cccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhc--cCchhhhhc
Confidence 54 5567788887777889999999999987541 12333343333322211 112112225
Q ss_pred CeEEEEEcCCCcEEEEE------cCCcEEEEECCCceeeeeeecCC----CCCCCeEEEEECCCCCEEEEEe-CCCcEEE
Q 001184 967 GETRVQFHSDQVRLLVN------HETQLAIYDGSKMECIRQWVPQD----VLSSPISSAAYSCNSQLIYATF-TDGSIGV 1035 (1130)
Q Consensus 967 ~v~~~~~s~d~~~l~~~------~d~~i~v~d~~~~~~~~~~~~~~----~~~~~v~~v~~s~dg~~l~t~~-~Dg~i~v 1035 (1130)
.+..++..+||+.++.+ +|.--.|=....++.+.-+.... ....-|-+++..-+..+++..+ ..+...+
T Consensus 227 SiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi 306 (366)
T COG3490 227 SIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVI 306 (366)
T ss_pred ceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEE
Confidence 78889999999988763 12222222222333333322211 1134567788877666666655 5567889
Q ss_pred EeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeC
Q 001184 1036 FDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEP 1092 (1130)
Q Consensus 1036 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~ 1092 (1130)
||..+|..+....... . .. +.- ...-+++.+.+|.++++.-
T Consensus 307 ~da~tG~vv~~a~l~d----a-------aG--va~---~~~gf~vssg~G~~~~~s~ 347 (366)
T COG3490 307 WDAATGAVVSEAALPD----A-------AG--VAA---AKGGFAVSSGQGRIIFYSR 347 (366)
T ss_pred EEcCCCcEEecccccc----c-------cc--cee---ccCceEEecCCceEEeccc
Confidence 9999999875543211 0 11 111 2234566666888887743
No 375
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.26 E-value=0.16 Score=58.54 Aligned_cols=243 Identities=13% Similarity=0.144 Sum_probs=123.1
Q ss_pred cEEEEEEcCCCCEEEEE-eCC----CeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCC--------
Q 001184 411 SVSRVAWSPDGNFIGVA-FTK----HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDD-------- 477 (1130)
Q Consensus 411 ~V~~v~~spdg~~las~-~~d----~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d-------- 477 (1130)
.+...++||||+++|.+ +.. ..++++|+++|+.+... +... ....+.|.+|++. ++.+...+
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~--i~~~--~~~~~~W~~d~~~-~~y~~~~~~~~~~~~~ 199 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG--IENP--KFSSVSWSDDGKG-FFYTRFDEDQRTSDSG 199 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE--EEEE--ESEEEEECTTSSE-EEEEECSTTTSS-CCG
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc--cccc--ccceEEEeCCCCE-EEEEEeCcccccccCC
Confidence 45578999999999876 333 36999999999755422 2211 1233999999985 34443222
Q ss_pred --CcEEEEe-cCCCe--eeEecCCCcC--EEEEeecccCCccEEEEEecC----CcEEEEEccCC----cceeeecCCCc
Q 001184 478 --KLIRVWD-LSGRK--LFQFEGHEAP--VYSVCPHQKENIHFIFSTAVD----GKIKAWLYDNV----GSRVDYDAPGL 542 (1130)
Q Consensus 478 --~~v~iwd-~~~~~--~~~~~~h~~~--v~~~~~~~~~~~~~l~s~s~d----g~i~vwd~~~~----~~~~~~~~~~~ 542 (1130)
..|+.|. -+... ...+.+.... ...+.. +.++++|+..+.. ..+.+.++... .....+.....
T Consensus 200 ~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~--s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~ 277 (414)
T PF02897_consen 200 YPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSR--SKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRED 277 (414)
T ss_dssp CCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE---TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSS
T ss_pred CCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEe--cCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCC
Confidence 2367777 33322 2344444433 334444 5566776654332 23566666653 12222222222
Q ss_pred cE-EEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCce---eEEEecccCceeEEEEEcCCCCEEEEE-eCCC--cEEEE
Q 001184 543 WC-TTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGAL---KRTYIGFRKKSAGVVQFDTTRNRILAA-GEDN--QIKFW 615 (1130)
Q Consensus 543 ~v-~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg--~i~vw 615 (1130)
.+ ..+... +..+...+...-..+.|...++..... ...+..+.. .+....+...+++|+.. ..++ .|+++
T Consensus 278 ~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~-~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~ 354 (414)
T PF02897_consen 278 GVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDE-DVSLEDVSLFKDYLVLSYRENGSSRLRVY 354 (414)
T ss_dssp S-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SS-SEEEEEEEEETTEEEEEEEETTEEEEEEE
T ss_pred ceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCC-ceeEEEEEEECCEEEEEEEECCccEEEEE
Confidence 23 333333 443333332334467888888877653 224444333 22323333345555553 3443 58899
Q ss_pred eCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeC----CCcEEEEEcCCC
Q 001184 616 DMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTA----DQGIKILANADG 664 (1130)
Q Consensus 616 d~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~----dg~i~iw~~~~~ 664 (1130)
++..+.....+..... +.|..+...+++..+..... -+++..||+.++
T Consensus 355 ~~~~~~~~~~~~~p~~-g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~ 406 (414)
T PF02897_consen 355 DLDDGKESREIPLPEA-GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATG 406 (414)
T ss_dssp ETT-TEEEEEEESSSS-SEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTT
T ss_pred ECCCCcEEeeecCCcc-eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 9984555555554432 23555555555554443322 246677777766
No 376
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.26 E-value=0.076 Score=63.48 Aligned_cols=103 Identities=11% Similarity=0.153 Sum_probs=70.3
Q ss_pred CCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCC-------CCEEEEEeCCCcEEEEeCCCCc--e
Q 001184 552 DGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTT-------RNRILAAGEDNQIKFWDMDNVN--M 622 (1130)
Q Consensus 552 ~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~-------~~~l~~~~~dg~i~vwd~~~~~--~ 622 (1130)
+.++|+... .....|+-.|++.|+.+..+..+...++ ..+.|+ ....+.|-.++.+..||.+-.. +
T Consensus 492 d~~mil~~~---~~~~~ly~mDLe~GKVV~eW~~~~~~~v--~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~ 566 (794)
T PF08553_consen 492 DRNMILLDP---NNPNKLYKMDLERGKVVEEWKVHDDIPV--VDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKL 566 (794)
T ss_pred ccceEeecC---CCCCceEEEecCCCcEEEEeecCCCcce--eEecccccccccCCCceEEEECCCceEEeccCCCCCce
Confidence 444555432 2367899999999999999998776444 444453 2346677788899999988632 2
Q ss_pred eEE-EeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEE
Q 001184 623 LTS-TEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILA 660 (1130)
Q Consensus 623 ~~~-~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~ 660 (1130)
+.. ...........|++-+.+| +||+|+.+|.||+||
T Consensus 567 v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd 604 (794)
T PF08553_consen 567 VDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYD 604 (794)
T ss_pred eeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeec
Confidence 211 1111233356778777776 689999999999998
No 377
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.20 E-value=0.15 Score=55.00 Aligned_cols=229 Identities=13% Similarity=0.096 Sum_probs=124.9
Q ss_pred ecCCCEEEEEeCCeEEEEECC-CceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEE--------
Q 001184 842 SKNDSYVMSAGGGKVSLFNMM-NFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTK-------- 912 (1130)
Q Consensus 842 s~dg~~la~~~dg~i~iwd~~-~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~-------- 912 (1130)
...++.|+.|.++.+.+++.. ......... ...|..+...| .-..|++-+ |+.++++++..-.....
T Consensus 4 ~~~~~~L~vGt~~Gl~~~~~~~~~~~~~i~~--~~~I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 4 DSWGDRLLVGTEDGLYVYDLSDPSKPTRILK--LSSITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred ccCCCEEEEEECCCEEEEEecCCccceeEee--cceEEEEEEec-ccCEEEEEc-CCccEEEEchhhccccccccccccc
Confidence 456788888885449999993 333333332 23399999999 444444443 59999999875433321
Q ss_pred ------EecCCCCeeEEE--EccCCCeEEEEeCCCcEEEEECCCCcccc-eeeEeccCCCCCCCeEEEEEcCCCcEEEEE
Q 001184 913 ------LKGHQKHITGLA--FSTNLNILVSSGSDAQLIFWNTDTWEKRK-SIAIQLPAGKLPVGETRVQFHSDQVRLLVN 983 (1130)
Q Consensus 913 ------l~~h~~~V~~l~--~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~ 983 (1130)
-......+...+ -...+...+.+...+.|.+|......... .... +...+..+..++|. +..++++
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~k---e~~lp~~~~~i~~~--~~~i~v~ 154 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLK---EISLPDPPSSIAFL--GNKICVG 154 (275)
T ss_pred cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeE---EEEcCCCcEEEEEe--CCEEEEE
Confidence 011222344444 12233334444445588888887642111 1111 11222678888888 6667777
Q ss_pred cCCcEEEEECCCceeeeeeecCCC---------CCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccc
Q 001184 984 HETQLAIYDGSKMECIRQWVPQDV---------LSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMS 1054 (1130)
Q Consensus 984 ~d~~i~v~d~~~~~~~~~~~~~~~---------~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~ 1054 (1130)
..+...+.|+.++.....+..... ...++..+... ++.+|++- |..-..-|. .|+....- ..
T Consensus 155 ~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~-~G~~~r~~-----~i 225 (275)
T PF00780_consen 155 TSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNK-NGEPSRKS-----TI 225 (275)
T ss_pred eCCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcC-CCCcCccc-----EE
Confidence 788899999997776554432211 12344444444 45666653 333333344 34422211 01
Q ss_pred cCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCcc
Q 001184 1055 QASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETER 1097 (1130)
Q Consensus 1055 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~~~~~ 1097 (1130)
.+ . ..+..+.+.. + +|+..+.++ |.||++.+++.
T Consensus 226 ~W---~--~~p~~~~~~~--p-yli~~~~~~-iEV~~~~~~~l 259 (275)
T PF00780_consen 226 QW---S--SAPQSVAYSS--P-YLIAFSSNS-IEVRSLETGEL 259 (275)
T ss_pred Ec---C--CchhEEEEEC--C-EEEEECCCE-EEEEECcCCcE
Confidence 11 1 1233455543 3 555555444 99999999874
No 378
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.17 E-value=0.098 Score=57.69 Aligned_cols=176 Identities=17% Similarity=0.174 Sum_probs=103.1
Q ss_pred eEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCC----CCEEEEEeC---------C-CeEEEE
Q 001184 371 EITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD----GNFIGVAFT---------K-HLIHLY 436 (1130)
Q Consensus 371 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd----g~~las~~~---------d-~~i~vw 436 (1130)
.|+|.|..+.+.+....+.- ..+-..+..+.+..+ ..+|++|+. . |.|.++
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~---------------~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~ 67 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEP---------------NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVF 67 (321)
T ss_dssp EEEEEETTTSSEEEEEEEET---------------TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEE
T ss_pred EEEEEeCCCCeEEEEEECCC---------------CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEE
Confidence 67888888877665332210 011112334444443 468887743 2 889999
Q ss_pred EecCC----ccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEec--CCCcCEEEEeecccC
Q 001184 437 TYQGS----NDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFE--GHEAPVYSVCPHQKE 509 (1130)
Q Consensus 437 d~~~~----~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~--~h~~~v~~~~~~~~~ 509 (1130)
++... ..++.... ....++|++++-- .+. ++++. .+.|.+|+ ...+.+.... .....+.++... .
T Consensus 68 ~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~-~~~--lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~ 139 (321)
T PF03178_consen 68 EISESPENNFKLKLIHS-TEVKGPVTAICSF-NGR--LVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--K 139 (321)
T ss_dssp EECSS-----EEEEEEE-EEESS-EEEEEEE-TTE--EEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--T
T ss_pred EEEcccccceEEEEEEE-EeecCcceEhhhh-CCE--EEEee--cCEEEEEEccCcccchhhheecceEEEEEEecc--c
Confidence 99884 23333333 3457889999877 343 34444 37899999 4444132222 233366666543 2
Q ss_pred CccEEEEEecCCcEEEEEccCCcc-ee--eecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCC
Q 001184 510 NIHFIFSTAVDGKIKAWLYDNVGS-RV--DYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES 575 (1130)
Q Consensus 510 ~~~~l~s~s~dg~i~vwd~~~~~~-~~--~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1130)
++++.|.....+.++.++.... .. .......+++++.|-++++.++.+- .+|.+.++...
T Consensus 140 --~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D----~~gnl~~l~~~ 202 (321)
T PF03178_consen 140 --NYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGD----KDGNLFVLRYN 202 (321)
T ss_dssp --TEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEE----TTSEEEEEEE-
T ss_pred --cEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEc----CCCeEEEEEEC
Confidence 5899999889888887665333 22 2233456789999987777666553 37888887754
No 379
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=97.14 E-value=0.66 Score=51.83 Aligned_cols=286 Identities=13% Similarity=0.136 Sum_probs=157.7
Q ss_pred cCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEec-----CCCEEEEEe
Q 001184 778 SGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSK-----NDSYVMSAG 852 (1130)
Q Consensus 778 ~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~-----dg~~la~~~ 852 (1130)
+...|++|+-.|.++||+.......+.. .++.. .-+.+|..+..-. +...||+-.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~----------------lllE~----~l~~PILqv~~G~F~s~~~~~~LaVLh 95 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPED----------------LLLET----QLKDPILQVECGKFVSGSEDLQLAVLH 95 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCcc----------------EEEEE----ecCCcEEEEEeccccCCCCcceEEEec
Confidence 3467889999999999986443332221 11111 2345566555432 334666656
Q ss_pred CCeEEEEECCC--ce-------eEEEEeCCC--CCeEEEEEeCC----CCcEEEEEeCCCcEEEEEeecCeEEEEEecCC
Q 001184 853 GGKVSLFNMMN--FK-------VMTTFMSPP--PASTFLAFHPQ----DNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQ 917 (1130)
Q Consensus 853 dg~i~iwd~~~--~~-------~~~~~~~~~--~~i~~l~~sp~----~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~ 917 (1130)
-..+.||.+.. +. .+..+..|. .....++.-|. +..++.+-+.||.+.+|+-+.-.....+.. .
T Consensus 96 P~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~ 174 (418)
T PF14727_consen 96 PRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-F 174 (418)
T ss_pred CCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-C
Confidence 77788887621 11 122222232 22333444332 247899999999999999876655455544 2
Q ss_pred CCeeEEEEccCCCeEEEEeCCCcEEEEECCCCc-------------------ccceeeEeccCCCCCCCeEEEEEcCCCc
Q 001184 918 KHITGLAFSTNLNILVSSGSDAQLIFWNTDTWE-------------------KRKSIAIQLPAGKLPVGETRVQFHSDQV 978 (1130)
Q Consensus 918 ~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~-------------------~~~~~~~~~~~~~~~~~v~~~~~s~d~~ 978 (1130)
--...++|.+.-..+++++.+..+.-|....-. +.........-+.....+..+.++....
T Consensus 175 llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~ 254 (418)
T PF14727_consen 175 LLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSES 254 (418)
T ss_pred CCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCc
Confidence 223457888888899999998888888753200 0001111111111112233334443444
Q ss_pred EEEEEcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEE----CCCCC---EEEEEeCCCcEEEEeCCCcccccccCCCc
Q 001184 979 RLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAY----SCNSQ---LIYATFTDGSIGVFDADSLRLRCRIAPSA 1051 (1130)
Q Consensus 979 ~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~----s~dg~---~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~ 1051 (1130)
.+++=..+++.+.+.. |......+-. -.+.....| ..++. .++.++.++++.||.=.+....+.+.
T Consensus 255 ~IvvLger~Lf~l~~~-G~l~~~krLd---~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l~--- 327 (418)
T PF14727_consen 255 DIVVLGERSLFCLKDN-GSLRFQKRLD---YNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQLP--- 327 (418)
T ss_pred eEEEEecceEEEEcCC-CeEEEEEecC---CceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecCCC---
Confidence 4444445566666653 4433332222 112222222 12322 57888889999999866555555543
Q ss_pred ccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCccCCc
Q 001184 1052 YMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETERKWG 1100 (1130)
Q Consensus 1052 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~~~~~~w~ 1100 (1130)
+....+.++..+.-+.+|++-+.+|.+.+-=+-+++.-..
T Consensus 328 ---------~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdPs~~~ 367 (418)
T PF14727_consen 328 ---------HVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTDPSLFQ 367 (418)
T ss_pred ---------CCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCCCcccc
Confidence 1122344444444567999999999999987777775443
No 380
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.13 E-value=0.35 Score=49.59 Aligned_cols=189 Identities=12% Similarity=0.142 Sum_probs=120.7
Q ss_pred CCceeEEEEecCCCEEEEEe-CC--eEEEEECCCceeEEEEeCCCC-CeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCe
Q 001184 833 EDVVPCVALSKNDSYVMSAG-GG--KVSLFNMMNFKVMTTFMSPPP-ASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDE 908 (1130)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~-dg--~i~iwd~~~~~~~~~~~~~~~-~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~ 908 (1130)
......+.|..+|.++-+.+ -| .|+.+|+.+++......-... ---.++.. ++++....-.++...+||..+-+
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~ 121 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLK 121 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccce
Confidence 44566788888888877776 34 599999999998776653322 12334444 44666667788999999999999
Q ss_pred EEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEE-EcCCc
Q 001184 909 VKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV-NHETQ 987 (1130)
Q Consensus 909 ~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~d~~ 987 (1130)
.+.++.- .+.=+.|+ .||+.|+..+....|.++|.++.+......... .+..-..+..+.+. +|...|- =....
T Consensus 122 ~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~-~g~pv~~LNELE~i-~G~IyANVW~td~ 196 (264)
T PF05096_consen 122 KIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTD-NGRPVSNLNELEYI-NGKIYANVWQTDR 196 (264)
T ss_dssp EEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EE-TTEE---EEEEEEE-TTEEEEEETTSSE
T ss_pred EEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEE-CCEECCCcEeEEEE-cCEEEEEeCCCCe
Confidence 9988864 35667777 578888888888899999998876655443332 11111345556665 5554443 24678
Q ss_pred EEEEECCCceeeeeeecC---------C---CCCCCeEEEEECCCCCEEEEEe
Q 001184 988 LAIYDGSKMECIRQWVPQ---------D---VLSSPISSAAYSCNSQLIYATF 1028 (1130)
Q Consensus 988 i~v~d~~~~~~~~~~~~~---------~---~~~~~v~~v~~s~dg~~l~t~~ 1028 (1130)
|...|..+|+....+... . ....-.+.||+.|++..|+..+
T Consensus 197 I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 197 IVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 889999999988765211 0 0134579999998877666555
No 381
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.08 E-value=0.093 Score=61.96 Aligned_cols=201 Identities=13% Similarity=0.102 Sum_probs=108.6
Q ss_pred CCeEEEEEeCCCCcEEEEEe------CCC--cEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCC--------
Q 001184 875 PASTFLAFHPQDNNIIAIGM------EDS--TIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSD-------- 938 (1130)
Q Consensus 875 ~~i~~l~~sp~~~~~lasg~------~dg--~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~D-------- 938 (1130)
..+...+++| +++.+|... .|+ .|.+++. .+.......+. ..+.-.|+|||+.|.+....
T Consensus 350 ~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence 4578899999 666655544 244 4555554 23222223332 37889999999988877533
Q ss_pred ----CcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEE---EECCCceeeee-----eecCC
Q 001184 939 ----AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAI---YDGSKMECIRQ-----WVPQD 1006 (1130)
Q Consensus 939 ----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v---~d~~~~~~~~~-----~~~~~ 1006 (1130)
+.+.+.+++.++... .....|..+.|||||..++.-.+++|++ -....|. ... +..
T Consensus 426 ~~~~gql~~~~vd~ge~~~---------~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~-~~l~~~~~l~~-- 493 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---------RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ-YALTNPREVGP-- 493 (591)
T ss_pred cCCCceEEEEeccCchhhh---------ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc-eeecccEEeec--
Confidence 122222333322111 1235799999999999999866778877 4544554 111 111
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCC-cccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCC
Q 001184 1007 VLSSPISSAAYSCNSQLIYATFTDGSIGVFDADS-LRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDG 1085 (1130)
Q Consensus 1007 ~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg 1085 (1130)
.....+.++.|..++.++ ++..++...+|.+.- |.....+.... ....++.++-.+ .-+..+..+|
T Consensus 494 ~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n---------~~~~v~~vaa~~---~~iyv~~~~g 560 (591)
T PRK13616 494 GLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRN---------LSAPVVAVAASP---STVYVTDARA 560 (591)
T ss_pred ccCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCC---------ccCceEEEecCC---ceEEEEcCCc
Confidence 113346889999999965 555555555564332 22211111110 112234455444 2466667777
Q ss_pred cEEEEeCCCCccCCccccc
Q 001184 1086 SVKVIEPSETERKWGVAVP 1104 (1130)
Q Consensus 1086 ~v~vW~~~~~~~~w~~~~p 1104 (1130)
.+.+=.-.++..-|..-.+
T Consensus 561 ~~~l~~~~~~~~~W~ev~~ 579 (591)
T PRK13616 561 VLQLPNSDSGDQYWREVPG 579 (591)
T ss_pred eEEecCCCCCCCCceECcc
Confidence 3333222344455854443
No 382
>PHA02713 hypothetical protein; Provisional
Probab=96.95 E-value=0.048 Score=64.65 Aligned_cols=227 Identities=9% Similarity=0.040 Sum_probs=116.4
Q ss_pred eEEEEECCCceeEEEEeCCCCCe-EEEEEeCCCCcEEEEEeCC------CcEEEEEeecCeEEE--EEecCCCCeeEEEE
Q 001184 855 KVSLFNMMNFKVMTTFMSPPPAS-TFLAFHPQDNNIIAIGMED------STIQIYNVRVDEVKT--KLKGHQKHITGLAF 925 (1130)
Q Consensus 855 ~i~iwd~~~~~~~~~~~~~~~~i-~~l~~sp~~~~~lasg~~d------g~v~iwd~~~~~~~~--~l~~h~~~V~~l~~ 925 (1130)
.+..||..+.+-...-....... .+++. - ++.+.+.|+.+ ..+..||..+..-.. .+....... .+.
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~-l-~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~--~~~ 348 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAI-V-DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF--SLA 348 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEE-E-CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce--eEE
Confidence 46778877654332211111111 22333 2 66788888754 347788877664221 111111111 122
Q ss_pred ccCCCeEEEEeCCC-----cEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEc-C--------------
Q 001184 926 STNLNILVSSGSDA-----QLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH-E-------------- 985 (1130)
Q Consensus 926 s~dg~~L~s~s~Dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-d-------------- 985 (1130)
.-+|+..+.||.++ ++..||..+.+.........+.. ....+ .-+|...+.|. +
T Consensus 349 ~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~----~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~ 422 (557)
T PHA02713 349 VIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALS----SYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSI 422 (557)
T ss_pred EECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccc----cccEE--EECCEEEEEeCCCcccccccccccccc
Confidence 33677778888764 47889988754322211111111 11111 22566555542 2
Q ss_pred ---------CcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCC------CcEEEEeCCC-cccccccCC
Q 001184 986 ---------TQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD------GSIGVFDADS-LRLRCRIAP 1049 (1130)
Q Consensus 986 ---------~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~D------g~i~vwd~~~-~~~~~~~~~ 1049 (1130)
..+..||..+.+-...-.... ......+..-+|++.+.|+.+ ..+..||..+ .+....-..
T Consensus 423 ~~~~~~~~~~~ve~YDP~td~W~~v~~m~~---~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m 499 (557)
T PHA02713 423 DMEEDTHSSNKVIRYDTVNNIWETLPNFWT---GTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTT 499 (557)
T ss_pred cccccccccceEEEECCCCCeEeecCCCCc---ccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcccc
Confidence 347788888765432211111 111111223467777777754 2467899887 444322111
Q ss_pred CcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCC--cEEEEeCCCCccCCcccccCCCC
Q 001184 1050 SAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDG--SVKVIEPSETERKWGVAVPVDNG 1108 (1130)
Q Consensus 1050 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg--~v~vW~~~~~~~~w~~~~p~~~~ 1108 (1130)
.. . .....+.+. ++.+.++||.|| ++..+|+.+.+ |....|--..
T Consensus 500 ~~----~----r~~~~~~~~----~~~iyv~Gg~~~~~~~e~yd~~~~~--W~~~~~~~~~ 546 (557)
T PHA02713 500 ES----R----LSALHTILH----DNTIMMLHCYESYMLQDTFNVYTYE--WNHICHQHSN 546 (557)
T ss_pred Cc----c----cccceeEEE----CCEEEEEeeecceeehhhcCccccc--ccchhhhcCC
Confidence 11 0 111122222 578999999998 78889998888 9887776543
No 383
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.93 E-value=0.76 Score=49.02 Aligned_cols=193 Identities=10% Similarity=0.068 Sum_probs=94.6
Q ss_pred EEEEecCCCEEEEEeCCeEEEEECCCcee-EEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecC
Q 001184 838 CVALSKNDSYVMSAGGGKVSLFNMMNFKV-MTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGH 916 (1130)
Q Consensus 838 ~l~~s~dg~~la~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h 916 (1130)
.+....++..++++..|.|..=. +.++. ..........+..+..++ ++++++++..-....-||--...-...-+.-
T Consensus 108 ~i~~l~~~~~~l~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~ 185 (302)
T PF14870_consen 108 GITALGDGSAELAGDRGAIYRTT-DGGKTWQAVVSETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNS 185 (302)
T ss_dssp EEEEEETTEEEEEETT--EEEES-STTSSEEEEE-S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--S
T ss_pred EEEEcCCCcEEEEcCCCcEEEeC-CCCCCeeEcccCCcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCc
Confidence 33333444444444445433322 12222 222334456788888888 8998888855544456664322111222234
Q ss_pred CCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCc
Q 001184 917 QKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKM 996 (1130)
Q Consensus 917 ~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~ 996 (1130)
+..|.+|.|+||+...+.+ ..|.|++=+.......-.. ...+.....-.+..++|.+++...+++..+.+ +...+.|
T Consensus 186 ~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~-~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l-~~S~DgG 262 (302)
T PF14870_consen 186 SRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSE-PIIPIKTNGYGILDLAYRPPNEIWAVGGSGTL-LVSTDGG 262 (302)
T ss_dssp SS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE----B-TTSS--S-EEEEEESSSS-EEEEESTT-E-EEESSTT
T ss_pred cceehhceecCCCCEEEEe-CCcEEEEccCCCCcccccc-ccCCcccCceeeEEEEecCCCCEEEEeCCccE-EEeCCCC
Confidence 5789999999998766644 8888887762211100000 00111122245889999999999998877754 4455556
Q ss_pred eeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEE
Q 001184 997 ECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVF 1036 (1130)
Q Consensus 997 ~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vw 1036 (1130)
+.-..-..........+.|.|.++.+-++.| .+|.|.-|
T Consensus 263 ktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 263 KTWQKDRVGENVPSNLYRIVFVNPDKGFVLG-QDGVLLRY 301 (302)
T ss_dssp SS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred ccceECccccCCCCceEEEEEcCCCceEEEC-CCcEEEEe
Confidence 6555444333335678999998776666655 58887665
No 384
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.92 E-value=0.39 Score=53.44 Aligned_cols=83 Identities=13% Similarity=-0.043 Sum_probs=53.8
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcC--------------CC
Q 001184 1009 SSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHP--------------QE 1074 (1130)
Q Consensus 1009 ~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~ 1074 (1130)
...+.+++.+|++++.|+..+=|+|.++|+.++..+..+..-. .++..+.-...-.. ..
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYR-------dAqc~wi~~~~~~~~~~~~~~~~~~~~~~~ 379 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYR-------DAQCGWIEVPEEGDRDRSNSNSPKSSSRFA 379 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCc-------cceEEEEEeecccccccccccccCCCCcce
Confidence 4568999999999998888777999999999988775553211 00100000000000 01
Q ss_pred CCEEEEEeCCCcEEEEeCCCCccC
Q 001184 1075 PNQLAVGLTDGSVKVIEPSETERK 1098 (1130)
Q Consensus 1075 ~~~l~s~~~Dg~v~vW~~~~~~~~ 1098 (1130)
-.+++-+-..|.|.||++..++.-
T Consensus 380 l~LvIyaprRg~lEvW~~~~g~Rv 403 (415)
T PF14655_consen 380 LFLVIYAPRRGILEVWSMRQGPRV 403 (415)
T ss_pred EEEEEEeccCCeEEEEecCCCCEE
Confidence 125566777999999999988753
No 385
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.90 E-value=0.53 Score=52.42 Aligned_cols=85 Identities=12% Similarity=0.211 Sum_probs=61.7
Q ss_pred CccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCC-----------------E-
Q 001184 541 GLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRN-----------------R- 602 (1130)
Q Consensus 541 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----------------~- 602 (1130)
...+.+++.+|++++.++. |.-|+|.++|+.++..++.++|..+..+.-+.....+. +
T Consensus 307 ~R~~~~i~~sP~~~laA~t----DslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L 382 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVT----DSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL 382 (415)
T ss_pred CceEEEEEECCCCCEEEEE----cCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEE
Confidence 3457889999998877764 45899999999999999999988775444332222111 2
Q ss_pred EEEEeCCCcEEEEeCCCCceeEEEecc
Q 001184 603 ILAAGEDNQIKFWDMDNVNMLTSTEAE 629 (1130)
Q Consensus 603 l~~~~~dg~i~vwd~~~~~~~~~~~~~ 629 (1130)
++-+-.-|.|.||.+.+|..+..+...
T Consensus 383 vIyaprRg~lEvW~~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 383 VIYAPRRGILEVWSMRQGPRVAAFNVG 409 (415)
T ss_pred EEEeccCCeEEEEecCCCCEEEEEEeC
Confidence 333667899999999999888777643
No 386
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.87 E-value=0.45 Score=52.04 Aligned_cols=237 Identities=13% Similarity=0.092 Sum_probs=108.9
Q ss_pred cCCeEEEee-eCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe---C
Q 001184 778 SGIGILALW-SNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG---G 853 (1130)
Q Consensus 778 ~g~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~---d 853 (1130)
+.++|++.+ ..+.|.+.|..+....|.-...... .++... ..-.....+..-|+|+.++++- +
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~---------~ev~~k----~g~s~PHT~Hclp~G~imIS~lGd~~ 152 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEP---------EEVFEK----TGLSRPHTVHCLPDGRIMISALGDAD 152 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-H---------HHHHHH----H-EEEEEEEEE-SS--EEEEEEEETT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCH---------HHHHhh----cCCCCCceeeecCCccEEEEeccCCC
Confidence 456677766 4788999888765444332211110 000000 0011222334457888887762 2
Q ss_pred ----CeEEEEECCCceeEEEEeCCCC---CeEEEEEeCCCCcEEEEEeC--------------------CCcEEEEEeec
Q 001184 854 ----GKVSLFNMMNFKVMTTFMSPPP---ASTFLAFHPQDNNIIAIGME--------------------DSTIQIYNVRV 906 (1130)
Q Consensus 854 ----g~i~iwd~~~~~~~~~~~~~~~---~i~~l~~sp~~~~~lasg~~--------------------dg~v~iwd~~~ 906 (1130)
|.+.++|-++.+.+...+.... --..+-+.| ..+++++... ..++.+||+.+
T Consensus 153 G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~ 231 (461)
T PF05694_consen 153 GNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWST 231 (461)
T ss_dssp S-S--EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTT
T ss_pred CCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCC
Confidence 5699999999988888764322 245667788 6666766543 34799999999
Q ss_pred CeEEEEEecCCC--CeeEEEEccC--CCeEEEEe-CCCcEEE-EECCCCcccceeeEeccCCCC---------------C
Q 001184 907 DEVKTKLKGHQK--HITGLAFSTN--LNILVSSG-SDAQLIF-WNTDTWEKRKSIAIQLPAGKL---------------P 965 (1130)
Q Consensus 907 ~~~~~~l~~h~~--~V~~l~~s~d--g~~L~s~s-~Dg~i~v-wd~~~~~~~~~~~~~~~~~~~---------------~ 965 (1130)
.+.++++.--.. ...-|.|..+ ..+=++++ -..+|.. |.-+.++-.....+.++.... +
T Consensus 232 r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P 311 (461)
T PF05694_consen 232 RKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVP 311 (461)
T ss_dssp TEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE-
T ss_pred CcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCC
Confidence 999999874332 3456677554 33333322 3334443 333444444444444433210 3
Q ss_pred CCeEEEEEcCCCcEEEEEc--CCcEEEEECCCc---eeeeeeecCC-------------CCCCCeEEEEECCCCCEEEEE
Q 001184 966 VGETRVQFHSDQVRLLVNH--ETQLAIYDGSKM---ECIRQWVPQD-------------VLSSPISSAAYSCNSQLIYAT 1027 (1130)
Q Consensus 966 ~~v~~~~~s~d~~~l~~~~--d~~i~v~d~~~~---~~~~~~~~~~-------------~~~~~v~~v~~s~dg~~l~t~ 1027 (1130)
.-++.|..|.|.++|.++. .|.++.||+.+- +.+.++.... ...+....+..|-||+.|...
T Consensus 312 ~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 312 PLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp -----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred CceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence 4579999999999999974 899999999863 2333322110 112334778889999977776
Q ss_pred e
Q 001184 1028 F 1028 (1130)
Q Consensus 1028 ~ 1028 (1130)
+
T Consensus 392 n 392 (461)
T PF05694_consen 392 N 392 (461)
T ss_dssp -
T ss_pred e
Confidence 5
No 387
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.85 E-value=0.003 Score=43.40 Aligned_cols=39 Identities=33% Similarity=0.609 Sum_probs=34.8
Q ss_pred CeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEE
Q 001184 907 DEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWN 945 (1130)
Q Consensus 907 ~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd 945 (1130)
+++...+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 355677788999999999999999999999999999996
No 388
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.0052 Score=68.34 Aligned_cols=94 Identities=16% Similarity=0.397 Sum_probs=71.3
Q ss_pred CCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEE-EEEEcCCCCEEE
Q 001184 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVS-RVAWSPDGNFIG 425 (1130)
Q Consensus 347 ~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~v~~spdg~~la 425 (1130)
...|.-+.|+|.-. ++|.+..+|.|.+..++- + |+|. +.-|...++ +++|.|||+.||
T Consensus 20 ~~~i~~~ewnP~~d-LiA~~t~~gelli~R~n~-q-------Rlwt------------ip~p~~~v~~sL~W~~DGklla 78 (665)
T KOG4640|consen 20 PINIKRIEWNPKMD-LIATRTEKGELLIHRLNW-Q-------RLWT------------IPIPGENVTASLCWRPDGKLLA 78 (665)
T ss_pred ccceEEEEEcCccc-hhheeccCCcEEEEEecc-c-------eeEe------------ccCCCCccceeeeecCCCCEEE
Confidence 45788899999887 799999999999988772 2 2343 333555566 999999999999
Q ss_pred EEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEe
Q 001184 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFS 463 (1130)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s 463 (1130)
+|-.||+|++-|++++..+... ...-...|.++-|.
T Consensus 79 Vg~kdG~I~L~Dve~~~~l~~~--~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 79 VGFKDGTIRLHDVEKGGRLVSF--LFSVETDISKGIWD 114 (665)
T ss_pred EEecCCeEEEEEccCCCceecc--ccccccchheeecc
Confidence 9999999999999998755431 12234456777775
No 389
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.0056 Score=68.15 Aligned_cols=93 Identities=11% Similarity=0.132 Sum_probs=77.1
Q ss_pred CCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCee-EEEEccCCCeEEEEeCCCcEEEEECCCCcccc
Q 001184 875 PASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHIT-GLAFSTNLNILVSSGSDAQLIFWNTDTWEKRK 953 (1130)
Q Consensus 875 ~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~-~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~ 953 (1130)
..+.-+.|+| .-.++|++..+|.|-++.+. .+.+.++.-|..+++ +++|.|||+.||.|-.||+|++-|++++....
T Consensus 21 ~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 21 INIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred cceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 4577899999 88999999999999999998 777888887888888 99999999999999999999999999987655
Q ss_pred eeeEeccCCCCCCCeEEEEEc
Q 001184 954 SIAIQLPAGKLPVGETRVQFH 974 (1130)
Q Consensus 954 ~~~~~~~~~~~~~~v~~~~~s 974 (1130)
...... ...+.++.|+
T Consensus 99 ~~~~s~-----e~~is~~~w~ 114 (665)
T KOG4640|consen 99 SFLFSV-----ETDISKGIWD 114 (665)
T ss_pred cccccc-----ccchheeecc
Confidence 532221 2456667776
No 390
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.76 E-value=0.16 Score=56.12 Aligned_cols=176 Identities=15% Similarity=0.111 Sum_probs=106.1
Q ss_pred cEEEEe-cCCCeeeEecC-CCcCEEEEeecccC-----CccEEEEEec----------CCcEEEEEccCC----ccee--
Q 001184 479 LIRVWD-LSGRKLFQFEG-HEAPVYSVCPHQKE-----NIHFIFSTAV----------DGKIKAWLYDNV----GSRV-- 535 (1130)
Q Consensus 479 ~v~iwd-~~~~~~~~~~~-h~~~v~~~~~~~~~-----~~~~l~s~s~----------dg~i~vwd~~~~----~~~~-- 535 (1130)
.|++.| .+.+.+..+.- ....+.+++...-. ...+++.|+. .|+|.++++... ....
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 577888 66666655442 22334444432211 2467777753 289999999884 1111
Q ss_pred eecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCc-eeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEE
Q 001184 536 DYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA-LKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKF 614 (1130)
Q Consensus 536 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v 614 (1130)
.-....++|++++-- +++ |+++. .+.|++|++...+ ....-..+....+.+ ....++++++|..-..+.+
T Consensus 83 ~~~~~~g~V~ai~~~-~~~-lv~~~-----g~~l~v~~l~~~~~l~~~~~~~~~~~i~s--l~~~~~~I~vgD~~~sv~~ 153 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF-NGR-LVVAV-----GNKLYVYDLDNSKTLLKKAFYDSPFYITS--LSVFKNYILVGDAMKSVSL 153 (321)
T ss_dssp EEEEESS-EEEEEEE-TTE-EEEEE-----TTEEEEEEEETTSSEEEEEEE-BSSSEEE--EEEETTEEEEEESSSSEEE
T ss_pred EEEeecCcceEhhhh-CCE-EEEee-----cCEEEEEEccCcccchhhheecceEEEEE--EeccccEEEEEEcccCEEE
Confidence 112235578888766 444 55554 6789999998877 544433323323444 4444679999998888888
Q ss_pred EeCCC-CceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001184 615 WDMDN-VNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANAD 663 (1130)
Q Consensus 615 wd~~~-~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 663 (1130)
+..+. ...+..+........+.++.|-+++..++++..+|.+.++....
T Consensus 154 ~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 154 LRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred EEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 86543 33344444443344678888886667999999999999998753
No 391
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.73 E-value=1.3 Score=48.85 Aligned_cols=112 Identities=24% Similarity=0.278 Sum_probs=58.9
Q ss_pred CEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCC----CCEE
Q 001184 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD----GNFI 424 (1130)
Q Consensus 349 ~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd----g~~l 424 (1130)
..++++|.|||+ +++ +...|.|++++ ..+.... .+. +. ..+..........++++|+ +.+.
T Consensus 3 ~P~~~a~~pdG~-l~v-~e~~G~i~~~~-~~g~~~~--~v~--~~--------~~v~~~~~~gllgia~~p~f~~n~~lY 67 (331)
T PF07995_consen 3 NPRSMAFLPDGR-LLV-AERSGRIWVVD-KDGSLKT--PVA--DL--------PEVFADGERGLLGIAFHPDFASNGYLY 67 (331)
T ss_dssp SEEEEEEETTSC-EEE-EETTTEEEEEE-TTTEECE--EEE--E---------TTTBTSTTBSEEEEEE-TTCCCC-EEE
T ss_pred CceEEEEeCCCc-EEE-EeCCceEEEEe-CCCcCcc--eec--cc--------ccccccccCCcccceeccccCCCCEEE
Confidence 568999999997 555 46699999999 4444311 000 00 0123455678899999995 4333
Q ss_pred EEEeCC--------CeEEEEEecCCc-cce---ee-eeeec---CCCCeeEEEEecCCCceEEEEEcCC
Q 001184 425 GVAFTK--------HLIHLYTYQGSN-DLC---QS-LEIDA---HVGGVNDLAFSYPNKQLCIVTCGDD 477 (1130)
Q Consensus 425 as~~~d--------~~i~vwd~~~~~-~~~---~~-~~~~~---h~~~V~~i~~s~d~~~l~l~s~s~d 477 (1130)
++.+.. ..|.-|....+. .+. .. ..+.. ....-..|+|.|||. +.++.+..
T Consensus 68 v~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~--LYvs~G~~ 134 (331)
T PF07995_consen 68 VYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK--LYVSVGDG 134 (331)
T ss_dssp EEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE--EEEEEB-T
T ss_pred EEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc--EEEEeCCC
Confidence 333321 245555555441 111 11 11111 233456799999996 44554443
No 392
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.62 E-value=0.45 Score=50.02 Aligned_cols=145 Identities=12% Similarity=0.085 Sum_probs=90.7
Q ss_pred CceeEEEEecCCCEEEEEe--CCe--EEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEE-eecCe
Q 001184 834 DVVPCVALSKNDSYVMSAG--GGK--VSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYN-VRVDE 908 (1130)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~--dg~--i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd-~~~~~ 908 (1130)
..+.+.++|+||+.+|... ++. ++++... ....... ....++...|++ ++.+.++...+...+++. ..++.
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCc
Confidence 3688999999999887765 444 5555443 3322221 234788889999 688887777777777774 23332
Q ss_pred EEE-EEe--cCCCCeeEEEEccCCCeEEEEe---CCCcEEEEECCCCccc----ceeeEeccCCCCCCCeEEEEEcCCCc
Q 001184 909 VKT-KLK--GHQKHITGLAFSTNLNILVSSG---SDAQLIFWNTDTWEKR----KSIAIQLPAGKLPVGETRVQFHSDQV 978 (1130)
Q Consensus 909 ~~~-~l~--~h~~~V~~l~~s~dg~~L~s~s---~Dg~i~vwd~~~~~~~----~~~~~~~~~~~~~~~v~~~~~s~d~~ 978 (1130)
... .+. .-.+.|+++.+||||.+++... .++.|.+=-+...... ......... .....+..+.|.+++.
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~-~~~~~v~~v~W~~~~~ 178 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAP-PLLSDVTDVAWSDDST 178 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecc-cccCcceeeeecCCCE
Confidence 221 121 1122899999999999888766 3567777665532221 111111111 1125788999999999
Q ss_pred EEEEE
Q 001184 979 RLLVN 983 (1130)
Q Consensus 979 ~l~~~ 983 (1130)
+++..
T Consensus 179 L~V~~ 183 (253)
T PF10647_consen 179 LVVLG 183 (253)
T ss_pred EEEEe
Confidence 88874
No 393
>PRK10115 protease 2; Provisional
Probab=96.54 E-value=2.7 Score=51.33 Aligned_cols=243 Identities=9% Similarity=0.020 Sum_probs=118.3
Q ss_pred ccEEEEEEcCCCCEEEEEeCC-----CeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCC-----Cc
Q 001184 410 ISVSRVAWSPDGNFIGVAFTK-----HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDD-----KL 479 (1130)
Q Consensus 410 ~~V~~v~~spdg~~las~~~d-----~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d-----~~ 479 (1130)
-.+..+.|||||++||.+... ..|++-|+.+|..+.. .+.+ .-..++|++|++. ++++...+ ..
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~--~i~~---~~~~~~w~~D~~~-~~y~~~~~~~~~~~~ 200 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE--LLDN---VEPSFVWANDSWT-FYYVRKHPVTLLPYQ 200 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc--cccC---cceEEEEeeCCCE-EEEEEecCCCCCCCE
Confidence 357788999999999886432 3688999988764321 1222 1256999999986 34443322 35
Q ss_pred EEEEe-cCC--CeeeEecCCCcCEEEEeecccCCccEEEEEec---CCcEEEEEccC--CcceeeecCCCccEEEEEEec
Q 001184 480 IRVWD-LSG--RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAV---DGKIKAWLYDN--VGSRVDYDAPGLWCTTMLYSA 551 (1130)
Q Consensus 480 v~iwd-~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~---dg~i~vwd~~~--~~~~~~~~~~~~~v~~~~~s~ 551 (1130)
|+.|+ .++ +-...+........ +......++.+++..+. ++.+.+++.+. ......+.........+. .
T Consensus 201 v~~h~lgt~~~~d~lv~~e~~~~~~-~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~- 277 (686)
T PRK10115 201 VWRHTIGTPASQDELVYEEKDDTFY-VSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-H- 277 (686)
T ss_pred EEEEECCCChhHCeEEEeeCCCCEE-EEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-e-
Confidence 77777 444 22333433333333 22222334555544433 35688888532 222222222222222222 2
Q ss_pred CCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecc-cCceeEEEEEcCCCCEEEEEeCCCcEEEE--eCCCCceeEEEec
Q 001184 552 DGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGF-RKKSAGVVQFDTTRNRILAAGEDNQIKFW--DMDNVNMLTSTEA 628 (1130)
Q Consensus 552 ~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~vw--d~~~~~~~~~~~~ 628 (1130)
.+..+...+..+.....|...++........+..+ .+..+..+.+. .+..+++...+|.-+++ +..++ .+..+..
T Consensus 278 ~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~-~~~~l~~ 355 (686)
T PRK10115 278 YQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTR-EVIGIAF 355 (686)
T ss_pred CCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCC-ceEEecC
Confidence 23444443322223455666666532222344444 33367777776 33455556666665554 44333 3333332
Q ss_pred cCCCCCcceEEEc--CCCC-EEEEEeC---CCcEEEEEcCCC
Q 001184 629 EGGLPSLPRLRFN--KEGN-LLVVTTA---DQGIKILANADG 664 (1130)
Q Consensus 629 ~~~~~~i~~v~~s--~~~~-~l~~~~~---dg~i~iw~~~~~ 664 (1130)
... ..+..+.++ +++. ++++.+. -+.+..+|..++
T Consensus 356 ~~~-~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 356 DDP-AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred CCC-ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 111 112222333 3333 3433332 356777776654
No 394
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.41 E-value=0.17 Score=43.96 Aligned_cols=102 Identities=16% Similarity=0.171 Sum_probs=65.2
Q ss_pred EEEEEEec---CCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEE
Q 001184 350 VVSMDFHP---FHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGV 426 (1130)
Q Consensus 350 V~~v~fsp---dg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las 426 (1130)
|+++++.+ ||..-|++|+.|..|+||+=+ +.+.. + ...+.|++++-... ..++.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~E-------------------i-~e~~~v~~L~~~~~-~~F~Y 58 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAE-------------------I-TETDKVTSLCSLGG-GRFAY 58 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEE-------------------E-ecccceEEEEEcCC-CEEEE
Confidence 56666554 555668999999999999854 22221 1 23457888887776 56899
Q ss_pred EeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEec---CCCceEEEEEcCCCcEE
Q 001184 427 AFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSY---PNKQLCIVTCGDDKLIR 481 (1130)
Q Consensus 427 ~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~---d~~~l~l~s~s~d~~v~ 481 (1130)
+..+|+|-+|+-... +- ..+ .+..+.++++.. ||.. -|++|-.+|.|-
T Consensus 59 ~l~NGTVGvY~~~~R--lW---RiK-SK~~~~~~~~~D~~gdG~~-eLI~GwsnGkve 109 (111)
T PF14783_consen 59 ALANGTVGVYDRSQR--LW---RIK-SKNQVTSMAFYDINGDGVP-ELIVGWSNGKVE 109 (111)
T ss_pred EecCCEEEEEeCcce--ee---eec-cCCCeEEEEEEcCCCCCce-EEEEEecCCeEE
Confidence 999999999986331 12 122 222366665543 3433 578887777664
No 395
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.41 E-value=0.0077 Score=41.24 Aligned_cols=34 Identities=32% Similarity=0.542 Sum_probs=31.1
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYT 437 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd 437 (1130)
.+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 7 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 7 TLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4567888999999999999999999999999996
No 396
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.37 E-value=0.22 Score=52.28 Aligned_cols=150 Identities=15% Similarity=0.116 Sum_probs=89.0
Q ss_pred CeEEEEEeCCCCcEEEEEe-CCCcEEEEEeecCeEEEE-EecCCCCeeEEEEccCCCeEEEEeCCCcEEEEE-CCCCccc
Q 001184 876 ASTFLAFHPQDNNIIAIGM-EDSTIQIYNVRVDEVKTK-LKGHQKHITGLAFSTNLNILVSSGSDAQLIFWN-TDTWEKR 952 (1130)
Q Consensus 876 ~i~~l~~sp~~~~~lasg~-~dg~v~iwd~~~~~~~~~-l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd-~~~~~~~ 952 (1130)
.+.+.++++ ++..+|... .++.-.+|-...+..... +.+ ..++...|++++...+....+...+++. ...++.
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~- 100 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG- 100 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcCCCcceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcc-
Confidence 688999999 565554443 333344444443333333 233 3688899999988777777677777774 223222
Q ss_pred ceeeEeccCCCCCCCeEEEEEcCCCcEEEEE----cCCcEEEEECC---Cc--eee-eeeecCCCCCCCeEEEEECCCCC
Q 001184 953 KSIAIQLPAGKLPVGETRVQFHSDQVRLLVN----HETQLAIYDGS---KM--ECI-RQWVPQDVLSSPISSAAYSCNSQ 1022 (1130)
Q Consensus 953 ~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~----~d~~i~v~d~~---~~--~~~-~~~~~~~~~~~~v~~v~~s~dg~ 1022 (1130)
.......+... ..|..+.+||||..++.- .++.+.+--+. .+ ..+ ............++.++|.+++.
T Consensus 101 ~~~~v~~~~~~--~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~ 178 (253)
T PF10647_consen 101 EPVEVDWPGLR--GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST 178 (253)
T ss_pred eeEEecccccC--CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCE
Confidence 12222222111 279999999999999973 26777766543 23 111 11111111246889999999999
Q ss_pred EEEEEeCCC
Q 001184 1023 LIYATFTDG 1031 (1130)
Q Consensus 1023 ~l~t~~~Dg 1031 (1130)
+++.+...+
T Consensus 179 L~V~~~~~~ 187 (253)
T PF10647_consen 179 LVVLGRSAG 187 (253)
T ss_pred EEEEeCCCC
Confidence 888777543
No 397
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.34 E-value=2.5 Score=47.40 Aligned_cols=277 Identities=12% Similarity=0.154 Sum_probs=144.4
Q ss_pred cCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcC-----CCCEEEEEeCCC
Q 001184 357 PFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP-----DGNFIGVAFTKH 431 (1130)
Q Consensus 357 pdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-----dg~~las~~~d~ 431 (1130)
++++..+++|+..|.++||+...++.... .+ ..-..-+.+|..++.-+ +...||+- .-.
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~-~l--------------llE~~l~~PILqv~~G~F~s~~~~~~LaVL-hP~ 97 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQPE-DL--------------LLETQLKDPILQVECGKFVSGSEDLQLAVL-HPR 97 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCCc-cE--------------EEEEecCCcEEEEEeccccCCCCcceEEEe-cCC
Confidence 34444689999999999999965442211 00 01122345666666532 33466664 556
Q ss_pred eEEEEEecCCccc------eeeeeeecCCCC--eeEEEEec----CCCceEEEEEcCCCcEEEEecCCCeeeE-ecC--C
Q 001184 432 LIHLYTYQGSNDL------CQSLEIDAHVGG--VNDLAFSY----PNKQLCIVTCGDDKLIRVWDLSGRKLFQ-FEG--H 496 (1130)
Q Consensus 432 ~i~vwd~~~~~~~------~~~~~~~~h~~~--V~~i~~s~----d~~~l~l~s~s~d~~v~iwd~~~~~~~~-~~~--h 496 (1130)
.+.||.+...... .....+..|.-. ...++.-| .|+. .++.=+-||.+.+++.+.-.... +.+ .
T Consensus 98 kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~-~IcVQS~DG~L~~feqe~~~f~~~lp~~ll 176 (418)
T PF14727_consen 98 KLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRD-FICVQSMDGSLSFFEQESFAFSRFLPDFLL 176 (418)
T ss_pred EEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCce-EEEEEecCceEEEEeCCcEEEEEEcCCCCC
Confidence 7889988322111 111122233322 22333322 2233 78889999999999955544332 222 3
Q ss_pred CcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcce-----------------------eeecCCCcc---EEEEEEe
Q 001184 497 EAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSR-----------------------VDYDAPGLW---CTTMLYS 550 (1130)
Q Consensus 497 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-----------------------~~~~~~~~~---v~~~~~s 550 (1130)
.+|+ ++.+.. +.+++++.+..+..|........ +.+.. +.. +..+.++
T Consensus 177 PgPl---~Y~~~t--Dsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nl-GE~~l~i~v~~~~ 250 (418)
T PF14727_consen 177 PGPL---CYCPRT--DSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNL-GEQALDIQVVRFS 250 (418)
T ss_pred CcCe---EEeecC--CEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEEC-CceeEEEEEEEcC
Confidence 3443 444444 46888888888888865321000 01111 112 3333343
Q ss_pred cCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcC----CC---CEEEEEeCCCcEEEEeCCCCcee
Q 001184 551 ADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDT----TR---NRILAAGEDNQIKFWDMDNVNML 623 (1130)
Q Consensus 551 ~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~----~~---~~l~~~~~dg~i~vwd~~~~~~~ 623 (1130)
.....+++-+ ...+.+.+. +|.+....+- ...+.....+.. ++ ..++.++.++.+.||.-. +++
T Consensus 251 ~~~~~IvvLg-----er~Lf~l~~-~G~l~~~krL-d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~--~L~ 321 (418)
T PF14727_consen 251 SSESDIVVLG-----ERSLFCLKD-NGSLRFQKRL-DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDT--TLV 321 (418)
T ss_pred CCCceEEEEe-----cceEEEEcC-CCeEEEEEec-CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCC--eEE
Confidence 3444455544 667877775 4544333222 221222222221 22 258889999999998643 333
Q ss_pred EEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 001184 624 TSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGL 665 (1130)
Q Consensus 624 ~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~ 665 (1130)
.........-.+....|..-...+++-+.+|.+.+--+.+..
T Consensus 322 WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdP 363 (418)
T PF14727_consen 322 WSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTDP 363 (418)
T ss_pred EecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCCC
Confidence 333322221122223333345578888999999998776653
No 398
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.20 E-value=0.75 Score=45.22 Aligned_cols=98 Identities=11% Similarity=0.101 Sum_probs=61.8
Q ss_pred EEEEeccCCeEEEeee-CCeEEeeecCC--CCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEE
Q 001184 772 RLLYTNSGIGILALWS-NGVQKLWKWNR--TEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYV 848 (1130)
Q Consensus 772 ~l~~s~~g~~l~~~~~-dg~i~iw~~~~--~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l 848 (1130)
.++|+.+.+.+....+ +-.|.-||.+. +..+- .-.++++...+..... ..-.+++..+|.+.
T Consensus 162 gl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~sn--------r~~i~dlrk~~~~e~~-------~PDGm~ID~eG~L~ 226 (310)
T KOG4499|consen 162 GLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSN--------RKVIFDLRKSQPFESL-------EPDGMTIDTEGNLY 226 (310)
T ss_pred cccccccCcEEEEEccCceEEeeeecCCCcccccC--------cceeEEeccCCCcCCC-------CCCcceEccCCcEE
Confidence 4566666666655544 55666676432 22111 1123444433222211 12345667788876
Q ss_pred EEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeC
Q 001184 849 MSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHP 884 (1130)
Q Consensus 849 a~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp 884 (1130)
++.- .++|.-.|..+|+.+.++..+...|+++||--
T Consensus 227 Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 227 VATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred EEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 6665 78999999999999999999999999999954
No 399
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.16 E-value=0.23 Score=58.77 Aligned_cols=235 Identities=13% Similarity=0.143 Sum_probs=130.3
Q ss_pred cCCCEEEEEe-C------CeEEEEECCCceeEEEEeC-CCCCeEEEEEeCCCCcEEEEEeCC-C-----cEEEEEeecCe
Q 001184 843 KNDSYVMSAG-G------GKVSLFNMMNFKVMTTFMS-PPPASTFLAFHPQDNNIIAIGMED-S-----TIQIYNVRVDE 908 (1130)
Q Consensus 843 ~dg~~la~~~-d------g~i~iwd~~~~~~~~~~~~-~~~~i~~l~~sp~~~~~lasg~~d-g-----~v~iwd~~~~~ 908 (1130)
..+.++++|+ . ..+..||..+++-.....- ......++++. ++.+.++|+.| | ++..||..+++
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCc
Confidence 3455666665 3 3488999887744333222 22224445555 46888999999 3 57788877654
Q ss_pred EEE--EEecCCCCeeEEEEccCCCeEEEEeCCCc-----EEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEE
Q 001184 909 VKT--KLKGHQKHITGLAFSTNLNILVSSGSDAQ-----LIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLL 981 (1130)
Q Consensus 909 ~~~--~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~-----i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~ 981 (1130)
=.. .+.......... .-+|...|+||.||. +..||..+.+......... ..-..-...-+|.+.+
T Consensus 361 W~~~a~M~~~R~~~~v~--~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~------~r~~~gv~~~~g~iYi 432 (571)
T KOG4441|consen 361 WTPVAPMNTKRSDFGVA--VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT------RRSGHGVAVLGGKLYI 432 (571)
T ss_pred eeccCCccCccccceeE--EECCEEEEEeccccccccccEEEecCCCCcccccCCCCc------ceeeeEEEEECCEEEE
Confidence 222 222111111111 226888889999864 7778877754322221111 1111222233555555
Q ss_pred E-EcC------CcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCc-----EEEEeCCCcccccccCC
Q 001184 982 V-NHE------TQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGS-----IGVFDADSLRLRCRIAP 1049 (1130)
Q Consensus 982 ~-~~d------~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~-----i~vwd~~~~~~~~~~~~ 1049 (1130)
+ |.+ ..+..||..+......-..... .... .++ .-++.+.+.|+.|+. |..||..+.+....-..
T Consensus 433 ~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~-R~~~-g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m 509 (571)
T KOG4441|consen 433 IGGGDGSSNCLNSVECYDPETNTWTLIAPMNTR-RSGF-GVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPM 509 (571)
T ss_pred EcCcCCCccccceEEEEcCCCCceeecCCcccc-cccc-eEE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcccC
Confidence 5 322 4588999887665443222210 1111 222 336888888887763 78899888775433211
Q ss_pred CcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCC-----cEEEEeCCCCccCCccccc
Q 001184 1050 SAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDG-----SVKVIEPSETERKWGVAVP 1104 (1130)
Q Consensus 1050 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg-----~v~vW~~~~~~~~w~~~~p 1104 (1130)
.. ..+...+.+. ++.+.++|+.|| +|..||..+.+ |....+
T Consensus 510 ~~--------~rs~~g~~~~----~~~ly~vGG~~~~~~l~~ve~ydp~~d~--W~~~~~ 555 (571)
T KOG4441|consen 510 TS--------PRSAVGVVVL----GGKLYAVGGFDGNNNLNTVECYDPETDT--WTEVTE 555 (571)
T ss_pred cc--------ccccccEEEE----CCEEEEEecccCccccceeEEcCCCCCc--eeeCCC
Confidence 11 0111111122 578999999988 58889888877 987777
No 400
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.09 E-value=1.1 Score=49.15 Aligned_cols=141 Identities=12% Similarity=0.095 Sum_probs=70.9
Q ss_pred CccEEEEEe-cCCcEEEEEccCCcc----eeeecC-------CCccEEEEEEecCCCeEEEeeec--CCCCcEEEEeeCC
Q 001184 510 NIHFIFSTA-VDGKIKAWLYDNVGS----RVDYDA-------PGLWCTTMLYSADGSRLFSCGTS--KEGDSHLVEWNES 575 (1130)
Q Consensus 510 ~~~~l~s~s-~dg~i~vwd~~~~~~----~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~~--~~~~~~i~~wd~~ 575 (1130)
+.++|+..+ ..++|.+.|+.+.-. ...++. .-.....+-.-|+|+.++++-.+ +++.|-+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 335666666 567899998874221 112221 00123445566899888876533 3556789999988
Q ss_pred CCceeEEEecccCc--eeEEEEEcCCCCEEEEEe--------------------CCCcEEEEeCCCCceeEEEeccCCCC
Q 001184 576 EGALKRTYIGFRKK--SAGVVQFDTTRNRILAAG--------------------EDNQIKFWDMDNVNMLTSTEAEGGLP 633 (1130)
Q Consensus 576 ~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~--------------------~dg~i~vwd~~~~~~~~~~~~~~~~~ 633 (1130)
+.+........... .-..+.+.|..+.+++.. ...++.+||+.+.+.++++.......
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 88888777654332 233477888888888864 23579999999999999998764322
Q ss_pred CcceEEE--cCCCCEEEEE
Q 001184 634 SLPRLRF--NKEGNLLVVT 650 (1130)
Q Consensus 634 ~i~~v~~--s~~~~~l~~~ 650 (1130)
....+.| .|+..+=+++
T Consensus 246 ~pLEvRflH~P~~~~gFvg 264 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVG 264 (461)
T ss_dssp EEEEEEE-SSTT--EEEEE
T ss_pred ceEEEEecCCCCccceEEE
Confidence 2344555 4445544444
No 401
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.00 E-value=1.2 Score=54.30 Aligned_cols=245 Identities=12% Similarity=0.048 Sum_probs=123.5
Q ss_pred CCCEEEEEeCCeEEEEECCCceeEEEEeCCCCC--------eEEEEEeC---------------CCCcEEEEEeCCCcEE
Q 001184 844 NDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPA--------STFLAFHP---------------QDNNIIAIGMEDSTIQ 900 (1130)
Q Consensus 844 dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~--------i~~l~~sp---------------~~~~~lasg~~dg~v~ 900 (1130)
++.+.++..++.|.-.|..+|+.+-++...... ...+++.. .++..|+.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 444444444788999999999888777632211 12233321 0234777888999999
Q ss_pred EEEeecCeEEEEEecCCCCee-------------EEEEcc--CCCeEEEEeC----------CCcEEEEECCCCccccee
Q 001184 901 IYNVRVDEVKTKLKGHQKHIT-------------GLAFST--NLNILVSSGS----------DAQLIFWNTDTWEKRKSI 955 (1130)
Q Consensus 901 iwd~~~~~~~~~l~~h~~~V~-------------~l~~s~--dg~~L~s~s~----------Dg~i~vwd~~~~~~~~~~ 955 (1130)
-.|.++|+.+..+.. .+.|. .+.-+| .+..++.++. +|.|+-+|..+++.+=..
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999998876532 12110 011111 1345665543 688999999998865333
Q ss_pred eEeccCCCCCCCeEEEEEcCCCcEEEEEcCC--cEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcE
Q 001184 956 AIQLPAGKLPVGETRVQFHSDQVRLLVNHET--QLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSI 1033 (1130)
Q Consensus 956 ~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~--~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i 1033 (1130)
....+... . .-+++.....+..+ ...-+|.+.+....-. . .+ +..+....+........+.|
T Consensus 353 ~~g~p~~~---~-----~~~~g~~~~~gg~n~W~~~s~D~~~glvy~pt--G----n~--~pd~~g~~r~~~~n~y~~sl 416 (764)
T TIGR03074 353 DPGNPDPT---A-----PPAPGETYTRNTPNSWSVASYDEKLGLVYLPM--G----NQ--TPDQWGGDRTPADEKYSSSL 416 (764)
T ss_pred ecCCCCcc---c-----CCCCCCEeccCCCCccCceEEcCCCCeEEEeC--C----Cc--cccccCCccccCcccccceE
Confidence 22111110 0 00122222111111 2334444444332211 0 00 01111111100011124557
Q ss_pred EEEeCCCcccccccCCCcc-cccCCCCCceeeeEEEEEcCCCCC---EEEEEeCCCcEEEEeCCCCccCCccc-ccCCCC
Q 001184 1034 GVFDADSLRLRCRIAPSAY-MSQASPNSQTVFPLVVTSHPQEPN---QLAVGLTDGSVKVIEPSETERKWGVA-VPVDNG 1108 (1130)
Q Consensus 1034 ~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~l~s~~~Dg~v~vW~~~~~~~~w~~~-~p~~~~ 1108 (1130)
.-.|++||+..-.++.... .=..+.....+ .+.+. ..++. .++.++.+|.+.+.|..+++..|.+. .|++.|
T Consensus 417 vALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~-L~d~~--~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~e~~vp~~ 493 (764)
T TIGR03074 417 VALDATTGKERWVFQTVHHDLWDMDVPAQPS-LVDLP--DADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVEEVPVPQG 493 (764)
T ss_pred EEEeCCCCceEEEecccCCccccccccCCce-EEeee--cCCCcEeeEEEEECCCCEEEEEECCCCCEEeeceeecCCcc
Confidence 7788888887765543110 00000011111 11121 11342 89999999999999999999999753 355544
No 402
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=95.99 E-value=5.6 Score=48.23 Aligned_cols=108 Identities=16% Similarity=0.066 Sum_probs=63.1
Q ss_pred EEEEcCCCcEEEEEcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEE--EeCCCccccccc
Q 001184 970 RVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGV--FDADSLRLRCRI 1047 (1130)
Q Consensus 970 ~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~v--wd~~~~~~~~~~ 1047 (1130)
-.+..|-..+++++-...+++||+...+.++...... ....|+.+++- +..+++|...-.+.. |+-+..+++.-.
T Consensus 938 v~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~-~p~~Is~iqt~--~~RI~VgD~qeSV~~~~y~~~~n~l~~fa 1014 (1205)
T KOG1898|consen 938 VGAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKF-IPNRISSIQTY--GARIVVGDIQESVHFVRYRREDNQLIVFA 1014 (1205)
T ss_pred ceEEeccCCEEEEecccEEEEeeCChHHHHhhhhhcc-CceEEEEEeec--ceEEEEeeccceEEEEEEecCCCeEEEEe
Confidence 3556677778888888899999998777766544332 24567777764 567777775555444 454444443222
Q ss_pred CCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeC
Q 001184 1048 APSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEP 1092 (1130)
Q Consensus 1048 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~ 1092 (1130)
... -..+++++..- |.+.++.|..=|.+.+-++
T Consensus 1015 dD~----------~pR~Vt~~~~l--D~~tvagaDrfGNi~~vR~ 1047 (1205)
T KOG1898|consen 1015 DDP----------VPRHVTALELL--DYDTVAGADRFGNIAVVRI 1047 (1205)
T ss_pred CCC----------ccceeeEEEEe--cCCceeeccccCcEEEEEC
Confidence 211 11223333322 3457888877776644443
No 403
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.93 E-value=3 Score=44.62 Aligned_cols=153 Identities=17% Similarity=0.213 Sum_probs=81.2
Q ss_pred CCCceeEEEEecCCCEEEEEeCCeE-EEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEee-cCeE
Q 001184 832 AEDVVPCVALSKNDSYVMSAGGGKV-SLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVR-VDEV 909 (1130)
Q Consensus 832 ~~~~i~~l~~s~dg~~la~~~dg~i-~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~-~~~~ 909 (1130)
....+..+..++||++++++..|.+ .-||.-...-...-......|..|.|.| ++.+.+.+ ..|.|++=+.. ..+.
T Consensus 143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~-~~~lw~~~-~Gg~~~~s~~~~~~~~ 220 (302)
T PF14870_consen 143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSP-DGNLWMLA-RGGQIQFSDDPDDGET 220 (302)
T ss_dssp ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-T-TS-EEEEE-TTTEEEEEE-TTEEEE
T ss_pred CcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecC-CCCEEEEe-CCcEEEEccCCCCccc
Confidence 4567888899999999999997764 5677543212222223467899999999 67766644 88888887621 1121
Q ss_pred EEE----EecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcC
Q 001184 910 KTK----LKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHE 985 (1130)
Q Consensus 910 ~~~----l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d 985 (1130)
-.. +..-.-.+..++|.+++...++++ .|.+ +...+.++. -.........+.....+.|.++.+-++.+.+
T Consensus 221 w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGkt---W~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~ 295 (302)
T PF14870_consen 221 WSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKT---WQKDRVGENVPSNLYRIVFVNPDKGFVLGQD 295 (302)
T ss_dssp E---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS----EE-GGGTTSSS---EEEEEETTEEEEE-ST
T ss_pred cccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCcc---ceECccccCCCCceEEEEEcCCCceEEECCC
Confidence 111 111223478999999877777555 4444 344554432 1111111223467889999888888888988
Q ss_pred CcEEEE
Q 001184 986 TQLAIY 991 (1130)
Q Consensus 986 ~~i~v~ 991 (1130)
|.+.-|
T Consensus 296 G~ll~~ 301 (302)
T PF14870_consen 296 GVLLRY 301 (302)
T ss_dssp TEEEEE
T ss_pred cEEEEe
Confidence 877655
No 404
>PHA02713 hypothetical protein; Provisional
Probab=95.92 E-value=0.35 Score=57.51 Aligned_cols=187 Identities=14% Similarity=0.090 Sum_probs=97.0
Q ss_pred cCCCEEEEEe-C------CeEEEEECCCceeEEEEeCCCCCe-EEEEEeCCCCcEEEEEeCCC-----cEEEEEeecCeE
Q 001184 843 KNDSYVMSAG-G------GKVSLFNMMNFKVMTTFMSPPPAS-TFLAFHPQDNNIIAIGMEDS-----TIQIYNVRVDEV 909 (1130)
Q Consensus 843 ~dg~~la~~~-d------g~i~iwd~~~~~~~~~~~~~~~~i-~~l~~sp~~~~~lasg~~dg-----~v~iwd~~~~~~ 909 (1130)
-++...+.|+ + ..+..||..+..-...-.-..... .+++. - ++++.+.|+.++ ++..||..+.+=
T Consensus 302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~-~-~g~IYviGG~~~~~~~~sve~Ydp~~~~W 379 (557)
T PHA02713 302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV-I-DDTIYAIGGQNGTNVERTIECYTMGDDKW 379 (557)
T ss_pred ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEE-E-CCEEEEECCcCCCCCCceEEEEECCCCeE
Confidence 3667777766 3 247788987764322111111111 12222 2 678888888764 488899876532
Q ss_pred --EEEEecCCCCeeEEEEccCCCeEEEEeCCC-----------------------cEEEEECCCCcccceeeEeccCCCC
Q 001184 910 --KTKLKGHQKHITGLAFSTNLNILVSSGSDA-----------------------QLIFWNTDTWEKRKSIAIQLPAGKL 964 (1130)
Q Consensus 910 --~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg-----------------------~i~vwd~~~~~~~~~~~~~~~~~~~ 964 (1130)
+..+.........++ -+|+..+.||.++ .+..||..+.+.......... .
T Consensus 380 ~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~--r- 454 (557)
T PHA02713 380 KMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTG--T- 454 (557)
T ss_pred EECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcc--c-
Confidence 222221111111222 3677777777653 477788777543222211111 1
Q ss_pred CCCeEEEEEcCCCcEEEEE-cC------CcEEEEECCC-cee--eeeeecCCCCCCCeEEEEECCCCCEEEEEeCCC--c
Q 001184 965 PVGETRVQFHSDQVRLLVN-HE------TQLAIYDGSK-MEC--IRQWVPQDVLSSPISSAAYSCNSQLIYATFTDG--S 1032 (1130)
Q Consensus 965 ~~~v~~~~~s~d~~~l~~~-~d------~~i~v~d~~~-~~~--~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg--~ 1032 (1130)
.-.+++ .-+|+..++| .+ ..+..||..+ .+- +..+... ......+. -+|++.++|+.|| .
T Consensus 455 --~~~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~---r~~~~~~~--~~~~iyv~Gg~~~~~~ 526 (557)
T PHA02713 455 --IRPGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESR---LSALHTIL--HDNTIMMLHCYESYML 526 (557)
T ss_pred --ccCcEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcc---cccceeEE--ECCEEEEEeeecceee
Confidence 111222 2334444443 22 2467899886 333 2222221 22222222 2788999999888 7
Q ss_pred EEEEeCCCcccc
Q 001184 1033 IGVFDADSLRLR 1044 (1130)
Q Consensus 1033 i~vwd~~~~~~~ 1044 (1130)
+..||..+.+.-
T Consensus 527 ~e~yd~~~~~W~ 538 (557)
T PHA02713 527 QDTFNVYTYEWN 538 (557)
T ss_pred hhhcCccccccc
Confidence 888888887754
No 405
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.88 E-value=0.18 Score=55.40 Aligned_cols=139 Identities=9% Similarity=0.081 Sum_probs=89.2
Q ss_pred EEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCe--------EEEeeecCCCCcEEEEeeCCCCc--eeEE
Q 001184 513 FIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSR--------LFSCGTSKEGDSHLVEWNESEGA--LKRT 582 (1130)
Q Consensus 513 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~--------l~~~~~~~~~~~~i~~wd~~~~~--~~~~ 582 (1130)
++.++.....++-.|++.++.+-+...+.. |.-+.+.|+++. |+-.+ +..|.-||.+-.. .+..
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs-----~n~vfriDpRv~~~~kl~~ 421 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLS-----DNSVFRIDPRVQGKNKLAV 421 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeec-----CCceEEecccccCcceeee
Confidence 445556667788888888888877777666 667777776542 22222 7789999986322 2222
Q ss_pred Eeccc---CceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEE
Q 001184 583 YIGFR---KKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKIL 659 (1130)
Q Consensus 583 ~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw 659 (1130)
..++. .....|.+-.. ..+|++|+.+|.|++||.-..+....+++-+. +|..+..+.+|++++..+ +..+.+.
T Consensus 422 ~q~kqy~~k~nFsc~aTT~-sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~--~I~hVdvtadGKwil~Tc-~tyLlLi 497 (644)
T KOG2395|consen 422 VQSKQYSTKNNFSCFATTE-SGYIVVGSLKGDIRLYDRIGRRAKTALPGLGD--AIKHVDVTADGKWILATC-KTYLLLI 497 (644)
T ss_pred eeccccccccccceeeecC-CceEEEeecCCcEEeehhhhhhhhhcccccCC--ceeeEEeeccCcEEEEec-ccEEEEE
Confidence 22221 11344444443 35899999999999999733333333444444 899999999999887665 4566666
Q ss_pred Ec
Q 001184 660 AN 661 (1130)
Q Consensus 660 ~~ 661 (1130)
++
T Consensus 498 ~t 499 (644)
T KOG2395|consen 498 DT 499 (644)
T ss_pred EE
Confidence 64
No 406
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.87 E-value=2.3 Score=43.89 Aligned_cols=205 Identities=13% Similarity=0.131 Sum_probs=118.6
Q ss_pred eeEEEEeCC-CCCeEEEEEeCCCCcEEEEEeCCC--cEEEEEeecCeEEEEEecCC-CCeeEEEEccCCCeEEEE-eCCC
Q 001184 865 KVMTTFMSP-PPASTFLAFHPQDNNIIAIGMEDS--TIQIYNVRVDEVKTKLKGHQ-KHITGLAFSTNLNILVSS-GSDA 939 (1130)
Q Consensus 865 ~~~~~~~~~-~~~i~~l~~sp~~~~~lasg~~dg--~v~iwd~~~~~~~~~l~~h~-~~V~~l~~s~dg~~L~s~-s~Dg 939 (1130)
+.+.++... ..-...+.|.. ++.++-+.+.-| .|+.+|+.+++......-.. ----.++... ..|.-- =.++
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~-~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~--d~l~qLTWk~~ 110 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLD-DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG--DKLYQLTWKEG 110 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEE-TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET--TEEEEEESSSS
T ss_pred EEEEECCCCCcccCccEEecC-CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC--CEEEEEEecCC
Confidence 344555422 23356788866 778888877766 69999999998776543211 1112333332 233333 3478
Q ss_pred cEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE-cCCcEEEEECCCceeeeeeecCCC--CCCCeEEEE
Q 001184 940 QLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-HETQLAIYDGSKMECIRQWVPQDV--LSSPISSAA 1016 (1130)
Q Consensus 940 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~--~~~~v~~v~ 1016 (1130)
...+||..+.+........ ..-..++ .|+..|+.+ ....++.+|..+.+..+.+..... .-..++.+.
T Consensus 111 ~~f~yd~~tl~~~~~~~y~-------~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE 181 (264)
T PF05096_consen 111 TGFVYDPNTLKKIGTFPYP-------GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELE 181 (264)
T ss_dssp EEEEEETTTTEEEEEEE-S-------SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEE
T ss_pred eEEEEccccceEEEEEecC-------CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEE
Confidence 8999999986654443221 2334444 566666664 578899999998887776644321 123456677
Q ss_pred ECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCC----CCceeeeEEEEEcCCCCCEEEEEe
Q 001184 1017 YSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASP----NSQTVFPLVVTSHPQEPNQLAVGL 1082 (1130)
Q Consensus 1017 ~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~s~~ 1082 (1130)
|- +|.+.|=.=....|..-|..+|+....+......+.... +....--.-++|.|..+.+++||=
T Consensus 182 ~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 182 YI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred EE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 75 676666555677889999999999887765554332100 011222346899998777777773
No 407
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=95.82 E-value=0.34 Score=42.16 Aligned_cols=104 Identities=9% Similarity=0.081 Sum_probs=61.9
Q ss_pred EEEEeeccc-CC-ccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCC
Q 001184 500 VYSVCPHQK-EN-IHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG 577 (1130)
Q Consensus 500 v~~~~~~~~-~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1130)
|+++++..- .+ .+.|+.|+.|..|++|+-+ ....++. ....|.+++-...++ ++.+.. +|+|-+|+-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~~~~-F~Y~l~----NGTVGvY~~~-- 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLGGGR-FAYALA----NGTVGVYDRS-- 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcCCCE-EEEEec----CCEEEEEeCc--
Confidence 566665432 22 2689999999999999644 3333333 344577777776654 555554 8999999742
Q ss_pred ceeEEEecccCceeEEEEEcCCC---CEEEEEeCCCcEEE
Q 001184 578 ALKRTYIGFRKKSAGVVQFDTTR---NRILAAGEDNQIKF 614 (1130)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~v 614 (1130)
..+...+..+. .+....+..++ .-|++|-.+|.|-+
T Consensus 72 ~RlWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 72 QRLWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred ceeeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 22223332222 33333343333 36888888887743
No 408
>PRK13684 Ycf48-like protein; Provisional
Probab=95.82 E-value=1.9 Score=47.59 Aligned_cols=157 Identities=10% Similarity=0.051 Sum_probs=90.4
Q ss_pred CCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEE-ecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCccc
Q 001184 874 PPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKL-KGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKR 952 (1130)
Q Consensus 874 ~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l-~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~ 952 (1130)
...+..+.+.| ++.+++++ ..|.+..-.-..++.-... ..-...++++.+.++++.++. +..|.+++=..+.++.=
T Consensus 172 ~g~~~~i~~~~-~g~~v~~g-~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~v-g~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSP-DGKYVAVS-SRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWML-ARGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECC-CCeEEEEe-CCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEE-ecCCEEEEccCCCCCcc
Confidence 45688899999 77776655 4565543111122222222 233457899999999887665 45676543223332210
Q ss_pred ceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCc
Q 001184 953 KSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGS 1032 (1130)
Q Consensus 953 ~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~ 1032 (1130)
.. ...+.......+..+.+.+++..++++.++.+. .....|+.-.............+.+.|..+++.+++| ..|.
T Consensus 249 ~~--~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~G~ 324 (334)
T PRK13684 249 SK--PIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLG-QRGV 324 (334)
T ss_pred cc--ccCCccccccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEEC-CCce
Confidence 10 111111112356788999999988888877665 3445555544433211123468888888777776655 5888
Q ss_pred EEEEe
Q 001184 1033 IGVFD 1037 (1130)
Q Consensus 1033 i~vwd 1037 (1130)
|..|+
T Consensus 325 il~~~ 329 (334)
T PRK13684 325 LLRYV 329 (334)
T ss_pred EEEec
Confidence 88876
No 409
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.80 E-value=3 Score=45.90 Aligned_cols=239 Identities=14% Similarity=0.131 Sum_probs=116.5
Q ss_pred ceeEEEEecCCCEEEEEeCCeEEEEECCCcee---EEEEe----CCCCCeEEEEEeCC---CCcEEEEEeCC--------
Q 001184 835 VVPCVALSKNDSYVMSAGGGKVSLFNMMNFKV---MTTFM----SPPPASTFLAFHPQ---DNNIIAIGMED-------- 896 (1130)
Q Consensus 835 ~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~~---~~~~~----~~~~~i~~l~~sp~---~~~~lasg~~d-------- 896 (1130)
..+.|+|.|||+++++-..|.|++++ ..+.. +..+. ........++++|+ ++.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 35789999999998876799999999 44433 22221 23345789999993 24444444421
Q ss_pred CcEEEEEeecC-------eEE-EEEec---CCCCeeEEEEccCCCeEEEEeCCCc-------------EEEEECCCCccc
Q 001184 897 STIQIYNVRVD-------EVK-TKLKG---HQKHITGLAFSTNLNILVSSGSDAQ-------------LIFWNTDTWEKR 952 (1130)
Q Consensus 897 g~v~iwd~~~~-------~~~-~~l~~---h~~~V~~l~~s~dg~~L~s~s~Dg~-------------i~vwd~~~~~~~ 952 (1130)
..|.-|....+ +.+ ..+.. ....-..|+|.|||.+.++.+..+. |.-.+.+.. ..
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~-~p 160 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGS-IP 160 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSS-B-
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCc-CC
Confidence 23444554433 111 22222 1223467999999987777765432 222222110 00
Q ss_pred ceeeEeccCCCCC-------CCeEEEEEcCC-CcEEEE--EcCCcEEEEECCCcee------------------------
Q 001184 953 KSIAIQLPAGKLP-------VGETRVQFHSD-QVRLLV--NHETQLAIYDGSKMEC------------------------ 998 (1130)
Q Consensus 953 ~~~~~~~~~~~~~-------~~v~~~~~s~d-~~~l~~--~~d~~i~v~d~~~~~~------------------------ 998 (1130)
...+..-...... -....++|+|. |.+.++ +.+..=.|..+..|.-
T Consensus 161 ~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~ 240 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCP 240 (331)
T ss_dssp TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-T
T ss_pred CCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCC
Confidence 0000000000000 23467899999 777776 3333222322222211
Q ss_pred -----eeeeecCCCCCCCeEEEEECC-------CCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeE
Q 001184 999 -----IRQWVPQDVLSSPISSAAYSC-------NSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPL 1066 (1130)
Q Consensus 999 -----~~~~~~~~~~~~~v~~v~~s~-------dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1066 (1130)
+..+. +...+..+.|-. .|.++++.-..+.|....++.+........ +. ......++
T Consensus 241 ~~~~P~~~~~----~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~-----~~~~~r~~ 309 (331)
T PF07995_consen 241 GFVPPVFAYP----PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEE--FL-----GGFGGRPR 309 (331)
T ss_dssp TS---SEEET----TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEE--EC-----TTSSS-EE
T ss_pred CcCccceeec----CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEE--cc-----ccCCCCce
Confidence 01111 124566666653 455666666667777777764432211110 00 11222466
Q ss_pred EEEEcCCCCCEEEEEeCCCcE
Q 001184 1067 VVTSHPQEPNQLAVGLTDGSV 1087 (1130)
Q Consensus 1067 ~~~~~~~~~~~l~s~~~Dg~v 1087 (1130)
.+.+.| |+.++++.+.+|.|
T Consensus 310 ~v~~~p-DG~Lyv~~d~~G~i 329 (331)
T PF07995_consen 310 DVAQGP-DGALYVSDDSDGKI 329 (331)
T ss_dssp EEEEET-TSEEEEEE-TTTTE
T ss_pred EEEEcC-CCeEEEEECCCCeE
Confidence 788888 58888888888876
No 410
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.80 E-value=1.5 Score=43.24 Aligned_cols=137 Identities=10% Similarity=0.034 Sum_probs=78.1
Q ss_pred CCCeeEEEEecCCCceEEEE-EcCC--------CcEEEEecCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEE
Q 001184 454 VGGVNDLAFSYPNKQLCIVT-CGDD--------KLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIK 524 (1130)
Q Consensus 454 ~~~V~~i~~s~d~~~l~l~s-~s~d--------~~v~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~ 524 (1130)
..+.++-..+|+|+ +.+- .+.. |.++.|-..++ +..+...-+--+.++|.. ....+-++-+.+-.|.
T Consensus 108 knR~NDgkvdP~Gr--yy~GtMad~~~~le~~~g~Ly~~~~~h~-v~~i~~~v~IsNgl~Wd~-d~K~fY~iDsln~~V~ 183 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGR--YYGGTMADFGDDLEPIGGELYSWLAGHQ-VELIWNCVGISNGLAWDS-DAKKFYYIDSLNYEVD 183 (310)
T ss_pred hcccccCccCCCCc--eeeeeeccccccccccccEEEEeccCCC-ceeeehhccCCccccccc-cCcEEEEEccCceEEe
Confidence 34566777889999 4322 2221 22233322211 111112222334566652 2224455667778888
Q ss_pred EEEccCC-------cceeeecC----CCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEE
Q 001184 525 AWLYDNV-------GSRVDYDA----PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGV 593 (1130)
Q Consensus 525 vwd~~~~-------~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~ 593 (1130)
-||.+-. ..+..+.. .....-.+++..+|++.+++-. .++|...|..+|+.+..+.-... .+++
T Consensus 184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n----g~~V~~~dp~tGK~L~eiklPt~-qits 258 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN----GGTVQKVDPTTGKILLEIKLPTP-QITS 258 (310)
T ss_pred eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec----CcEEEEECCCCCcEEEEEEcCCC-ceEE
Confidence 8884422 12222221 1112345666778888777764 78999999999999999887655 7888
Q ss_pred EEEcCC
Q 001184 594 VQFDTT 599 (1130)
Q Consensus 594 ~~~~~~ 599 (1130)
+||.-.
T Consensus 259 ccFgGk 264 (310)
T KOG4499|consen 259 CCFGGK 264 (310)
T ss_pred EEecCC
Confidence 888643
No 411
>PRK10115 protease 2; Provisional
Probab=95.75 E-value=7.3 Score=47.70 Aligned_cols=246 Identities=10% Similarity=0.045 Sum_probs=115.0
Q ss_pred cceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCE
Q 001184 768 SKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSY 847 (1130)
Q Consensus 768 ~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~ 847 (1130)
-.+..+.++|||++|+.+.+.+--.-++ +.+.++.+|..+...+. ..-..++|++|++.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~-----------------l~v~d~~tg~~l~~~i~----~~~~~~~w~~D~~~ 185 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYG-----------------IRFRNLETGNWYPELLD----NVEPSFVWANDSWT 185 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEE-----------------EEEEECCCCCCCCcccc----CcceEEEEeeCCCE
Confidence 3466788899999888775532211111 12334444543222121 11145899999987
Q ss_pred EEEEe-C------CeEEEEECCCc--eeEEEEeCCCCCeE-EEEEeCCCCcEEEEEeC---CCcEEEEEee--cCeEEEE
Q 001184 848 VMSAG-G------GKVSLFNMMNF--KVMTTFMSPPPAST-FLAFHPQDNNIIAIGME---DSTIQIYNVR--VDEVKTK 912 (1130)
Q Consensus 848 la~~~-d------g~i~iwd~~~~--~~~~~~~~~~~~i~-~l~~sp~~~~~lasg~~---dg~v~iwd~~--~~~~~~~ 912 (1130)
|+... + ..|+.+++.++ +....+........ .+..+. ++++++..+. ++.+.+|+.. +++....
T Consensus 186 ~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~-d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~ 264 (686)
T PRK10115 186 FYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTT-SKHYVVIHLASATTSEVLLLDAELADAEPFVF 264 (686)
T ss_pred EEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcC-CCCEEEEEEECCccccEEEEECcCCCCCceEE
Confidence 76654 2 25888899887 44444543333333 333343 5555544443 3468888843 3432222
Q ss_pred EecCCCCeeEEEEccCCCeEEEEeCC-CcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCc--EE
Q 001184 913 LKGHQKHITGLAFSTNLNILVSSGSD-AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQ--LA 989 (1130)
Q Consensus 913 l~~h~~~V~~l~~s~dg~~L~s~s~D-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~--i~ 989 (1130)
+..-.+....+. +..+.+++....+ ...+|..+.-.... ....-.+ ......+..+.+..+.-.+....++. +.
T Consensus 265 ~~~~~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~-~~~~l~~-~~~~~~i~~~~~~~~~l~~~~~~~g~~~l~ 341 (686)
T PRK10115 265 LPRRKDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQ-QWEELIP-PRENIMLEGFTLFTDWLVVEERQRGLTSLR 341 (686)
T ss_pred EECCCCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCCcc-cCeEEEC-CCCCCEEEEEEEECCEEEEEEEeCCEEEEE
Confidence 222222222222 2223333332222 23334333221111 1111111 11224567777774422222244554 44
Q ss_pred EEECCCceeeeeee-cCCCCCCCeEEEEEC--CCCC-EEEEEeC---CCcEEEEeCCCcc
Q 001184 990 IYDGSKMECIRQWV-PQDVLSSPISSAAYS--CNSQ-LIYATFT---DGSIGVFDADSLR 1042 (1130)
Q Consensus 990 v~d~~~~~~~~~~~-~~~~~~~~v~~v~~s--~dg~-~l~t~~~---Dg~i~vwd~~~~~ 1042 (1130)
+++..++. +..+. .. ...+..+.++ +++. ++++.++ -+.++.||..+++
T Consensus 342 ~~~~~~~~-~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 342 QINRKTRE-VIGIAFDD---PAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEcCCCCc-eEEecCCC---CceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 55554333 33332 21 1223334444 4444 5554443 4779999998875
No 412
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.75 E-value=0.78 Score=47.13 Aligned_cols=178 Identities=9% Similarity=0.089 Sum_probs=115.8
Q ss_pred EecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE-cCCcEEEE
Q 001184 913 LKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-HETQLAIY 991 (1130)
Q Consensus 913 l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~d~~i~v~ 991 (1130)
+.+-...|.++.|+|+.+.|++......-.||=-..|+.....++... .....+.+..+|+++++. .++.+.++
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~-----~DpE~Ieyig~n~fvi~dER~~~l~~~ 155 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF-----SDPETIEYIGGNQFVIVDERDRALYLF 155 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccccc-----CChhHeEEecCCEEEEEehhcceEEEE
Confidence 344455699999999999999999888888887777777666555432 344568888999998885 58888888
Q ss_pred ECCCceeeeeee------cCCCC-CCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceee
Q 001184 992 DGSKMECIRQWV------PQDVL-SSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVF 1064 (1130)
Q Consensus 992 d~~~~~~~~~~~------~~~~~-~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1064 (1130)
.+..+..+.... +...+ +...-.++|+|.++.|+.+-+-.-+.||.+..+.......... .+...-.--...
T Consensus 156 ~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~-~~~~~~~~f~~D 234 (316)
T COG3204 156 TVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASL-DPTADRDLFVLD 234 (316)
T ss_pred EEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCccccccccc-CcccccceEeec
Confidence 776543222111 11111 5678899999999999999888888888776333111111000 000000000111
Q ss_pred eEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCc
Q 001184 1065 PLVVTSHPQEPNQLAVGLTDGSVKVIEPSETE 1096 (1130)
Q Consensus 1065 ~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~~~~ 1096 (1130)
+-.+.|++..+.+||-+.+++.|...+.....
T Consensus 235 vSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~ 266 (316)
T COG3204 235 VSGLEFNAITNSLLVLSDESRRLLEVDLSGEV 266 (316)
T ss_pred cccceecCCCCcEEEEecCCceEEEEecCCCe
Confidence 22356777778888888888888888776553
No 413
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.73 E-value=0.18 Score=60.32 Aligned_cols=103 Identities=19% Similarity=0.223 Sum_probs=76.0
Q ss_pred CCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCc
Q 001184 420 DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEA 498 (1130)
Q Consensus 420 dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~ 498 (1130)
-+..+|.|+..|.+-..|+.+. +.+...-..-.++|++++|+.||+ .++.|-.+|.|.+|| ..++.++.+..|..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~--~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGS--LLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCc--eeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 3557889999999998888764 221112233467899999999999 899999999999999 77888999988888
Q ss_pred CEEEEeecc-cCCccEEEEEecCCcEEEEEc
Q 001184 499 PVYSVCPHQ-KENIHFIFSTAVDGKIKAWLY 528 (1130)
Q Consensus 499 ~v~~~~~~~-~~~~~~l~s~s~dg~i~vwd~ 528 (1130)
+.+++-++. ..++..++++..-|. +|.+
T Consensus 174 p~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 887776542 233345777766665 5644
No 414
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.51 E-value=0.04 Score=53.92 Aligned_cols=104 Identities=18% Similarity=0.208 Sum_probs=68.7
Q ss_pred CCEEEEEe-CCeEEEEECCCceeE-EEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCC-CCee
Q 001184 845 DSYVMSAG-GGKVSLFNMMNFKVM-TTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQ-KHIT 921 (1130)
Q Consensus 845 g~~la~~~-dg~i~iwd~~~~~~~-~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-~~V~ 921 (1130)
+.-+++|. +|.|.+|+..-...+ .........|.++.-.-+++.+..++..||.|+.|++.-++.+.....|. .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 34455555 899999988632111 11112223333333333356689999999999999999999888888888 5566
Q ss_pred EEEEccCCCeEEEE--eCCCcEEEEECCC
Q 001184 922 GLAFSTNLNILVSS--GSDAQLIFWNTDT 948 (1130)
Q Consensus 922 ~l~~s~dg~~L~s~--s~Dg~i~vwd~~~ 948 (1130)
.+..+..++.++++ |.|..++.|++..
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchhh
Confidence 66666666677766 6777777777765
No 415
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.44 E-value=0.053 Score=39.08 Aligned_cols=33 Identities=18% Similarity=0.368 Sum_probs=29.4
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCc
Q 001184 409 SISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSN 442 (1130)
Q Consensus 409 ~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~ 442 (1130)
...|.+++|+|...+||.++.+|.|.+|.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 457999999999999999999999999998 443
No 416
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.42 E-value=0.06 Score=38.81 Aligned_cols=34 Identities=21% Similarity=0.261 Sum_probs=30.4
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCccc
Q 001184 1009 SSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRL 1043 (1130)
Q Consensus 1009 ~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~ 1043 (1130)
...|..++|+|...+||.++.||.|.||.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 568999999999999999999999999998 4543
No 417
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.41 E-value=1.5 Score=52.05 Aligned_cols=232 Identities=9% Similarity=0.013 Sum_probs=117.4
Q ss_pred CCCCEEEEEeCC------CeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCC------CcEEEEe-c
Q 001184 419 PDGNFIGVAFTK------HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDD------KLIRVWD-L 485 (1130)
Q Consensus 419 pdg~~las~~~d------~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d------~~v~iwd-~ 485 (1130)
..+..++.||.+ ..+..||..++.-. ....+. +...-.++++.. +. +.++||.| .++..|| .
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~-~~a~m~-~~r~~~~~~~~~-~~--lYv~GG~~~~~~~l~~ve~YD~~ 357 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWS-SLAPMP-SPRCRVGVAVLN-GK--LYVVGGYDSGSDRLSSVERYDPR 357 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEe-ecCCCC-cccccccEEEEC-CE--EEEEccccCCCcccceEEEecCC
Confidence 345566677666 36778888776321 111222 222234445543 44 78888888 3577888 5
Q ss_pred CCCeee--EecCCCcCEEEEeecccCCccEEEEEecCCc-----EEEEEccCCcceeeecCCCccEEEEE-EecCCCeEE
Q 001184 486 SGRKLF--QFEGHEAPVYSVCPHQKENIHFIFSTAVDGK-----IKAWLYDNVGSRVDYDAPGLWCTTML-YSADGSRLF 557 (1130)
Q Consensus 486 ~~~~~~--~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~-----i~vwd~~~~~~~~~~~~~~~~v~~~~-~s~~~~~l~ 557 (1130)
.++... .+.......... .-+|.+.+.||.||. +..||..+.+=...-.... ...... ..-+|...+
T Consensus 358 ~~~W~~~a~M~~~R~~~~v~----~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-~r~~~gv~~~~g~iYi 432 (571)
T KOG4441|consen 358 TNQWTPVAPMNTKRSDFGVA----VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-RRSGHGVAVLGGKLYI 432 (571)
T ss_pred CCceeccCCccCccccceeE----EECCEEEEEeccccccccccEEEecCCCCcccccCCCCc-ceeeeEEEEECCEEEE
Confidence 444332 111111111111 124578888888864 6667665433222111111 122222 233677777
Q ss_pred EeeecCCCC--cEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCceeEEEeccC
Q 001184 558 SCGTSKEGD--SHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDN-----QIKFWDMDNVNMLTSTEAEG 630 (1130)
Q Consensus 558 ~~~~~~~~~--~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~~~ 630 (1130)
+||.+...+ ..+..||..+......-.......-..++. -++...+.||.|+ +|..||..+.+....-....
T Consensus 433 ~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~ 511 (571)
T KOG4441|consen 433 IGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTS 511 (571)
T ss_pred EcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcc
Confidence 777544322 678899988876543322211111112222 2556677777666 37788888776544422222
Q ss_pred CCCCcceEEEcCCCCEEEEEeCCCc-----EEEEEcCC
Q 001184 631 GLPSLPRLRFNKEGNLLVVTTADQG-----IKILANAD 663 (1130)
Q Consensus 631 ~~~~i~~v~~s~~~~~l~~~~~dg~-----i~iw~~~~ 663 (1130)
....+..+.. ++...++|+.||. |..||..+
T Consensus 512 ~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 512 PRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPET 547 (571)
T ss_pred ccccccEEEE--CCEEEEEecccCccccceeEEcCCCC
Confidence 2112222222 4667777877653 44555443
No 418
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.36 E-value=0.13 Score=61.35 Aligned_cols=102 Identities=18% Similarity=0.305 Sum_probs=76.3
Q ss_pred CCCEEEEEe-CCeEEEEECCCcee-EEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCee
Q 001184 844 NDSYVMSAG-GGKVSLFNMMNFKV-MTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHIT 921 (1130)
Q Consensus 844 dg~~la~~~-dg~i~iwd~~~~~~-~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~ 921 (1130)
.+.+++.|+ .|.+-..|+.+.-. ...-..-.++|++++|+. +|.+++.|-.+|.|.+||+..++.++.+..|..+.+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 455677777 57788888765311 111122357899999999 999999999999999999999999999988877776
Q ss_pred EEEE---ccCCCeEEEEeCCCcEEEEECCC
Q 001184 922 GLAF---STNLNILVSSGSDAQLIFWNTDT 948 (1130)
Q Consensus 922 ~l~~---s~dg~~L~s~s~Dg~i~vwd~~~ 948 (1130)
++-+ ..++..+.++..-|. +|.+.-
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gs--f~~lv~ 204 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGS--FWKLVF 204 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCc--eEEEEe
Confidence 6544 445667888877775 777543
No 419
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.92 E-value=9.6 Score=46.32 Aligned_cols=94 Identities=14% Similarity=0.090 Sum_probs=55.9
Q ss_pred CCCceeEEEEecCCCEEEEEeCCeEEEEECCCc-eeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEE
Q 001184 832 AEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNF-KVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVK 910 (1130)
Q Consensus 832 ~~~~i~~l~~s~dg~~la~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~ 910 (1130)
..-.|..+.++++|+++|..+...|.|..+... ..-..+.+....|.|=.+.= +..++.
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v-~~~~~~------------------- 142 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPV-DERFFT------------------- 142 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEe-chhhcc-------------------
Confidence 456799999999999999988776666665321 11122222222222222211 111110
Q ss_pred EEEecCCCCeeEEEEccC---CCeEEEEeCCCcEEEEECCC
Q 001184 911 TKLKGHQKHITGLAFSTN---LNILVSSGSDAQLIFWNTDT 948 (1130)
Q Consensus 911 ~~l~~h~~~V~~l~~s~d---g~~L~s~s~Dg~i~vwd~~~ 948 (1130)
..+...|..+.|+|. +..|+.-..|+++++||+..
T Consensus 143 ---~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 143 ---SNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred ---CCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 123345677788776 46888888888888888865
No 420
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.89 E-value=0.26 Score=59.24 Aligned_cols=146 Identities=14% Similarity=0.107 Sum_probs=93.9
Q ss_pred CCceeEEEEecCCCEEEEEe--CC-eEEEEECCCceeEE-----EEeC------CCCCeEEEEEeCCCCcEEEEEeCCCc
Q 001184 833 EDVVPCVALSKNDSYVMSAG--GG-KVSLFNMMNFKVMT-----TFMS------PPPASTFLAFHPQDNNIIAIGMEDST 898 (1130)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~--dg-~i~iwd~~~~~~~~-----~~~~------~~~~i~~l~~sp~~~~~lasg~~dg~ 898 (1130)
.-.+..+...+|+...++.. +| .|..||+.+...-. .+.. ......++.|.|.=....|+...|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 44566777788887766554 33 58999987643221 1111 22345677888743345667778999
Q ss_pred EEEEEeecCe-EEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCC
Q 001184 899 IQIYNVRVDE-VKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQ 977 (1130)
Q Consensus 899 v~iwd~~~~~-~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~ 977 (1130)
|++..+.... .+..+. -....++++|+|.|+.|+.|-..|++.-|......+.. +..+.......|.++.|-...
T Consensus 180 l~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~---ip~Pp~~e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSE---IPEPPVEENYRVLSVTWLSTQ 255 (1405)
T ss_pred hhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecccceeec---ccCCCcCCCcceeEEEEecce
Confidence 9988776332 222222 34568999999999999999999999888766532211 111222224678888888777
Q ss_pred cEEEE
Q 001184 978 VRLLV 982 (1130)
Q Consensus 978 ~~l~~ 982 (1130)
.++++
T Consensus 256 eflvv 260 (1405)
T KOG3630|consen 256 EFLVV 260 (1405)
T ss_pred eEEEE
Confidence 77765
No 421
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.75 E-value=6 Score=40.95 Aligned_cols=187 Identities=13% Similarity=0.137 Sum_probs=115.0
Q ss_pred CCCceeEEEEecCCCEEEEEeC-CeEEEEECCCceeEEEEeCC-CCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeE
Q 001184 832 AEDVVPCVALSKNDSYVMSAGG-GKVSLFNMMNFKVMTTFMSP-PPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEV 909 (1130)
Q Consensus 832 ~~~~i~~l~~s~dg~~la~~~d-g~i~iwd~~~~~~~~~~~~~-~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~ 909 (1130)
....+.++.|+|+.+.|.+..+ ..-.|+=...|+.++++... ....-.+.+.. +++++++--.++.++++.+..+..
T Consensus 84 ~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd~~t~ 162 (316)
T COG3204 84 ETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG-GNQFVIVDERDRALYLFTVDADTT 162 (316)
T ss_pred ccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec-CCEEEEEehhcceEEEEEEcCCcc
Confidence 4455999999999998887774 55666666788898887632 23345677877 888888888889999998876522
Q ss_pred EEE-------Ee--cC-CCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCC------CCCeEEEEE
Q 001184 910 KTK-------LK--GH-QKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKL------PVGETRVQF 973 (1130)
Q Consensus 910 ~~~-------l~--~h-~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~------~~~v~~~~~ 973 (1130)
+.. +. .+ ...--.++|.|..+.|..+=+-.-+.|+........ ........+. -..+..+.|
T Consensus 163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~--l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSS--LSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcc--cccccccCcccccceEeecccccee
Confidence 211 11 12 445778999999999999888877888777643211 1111111111 135677788
Q ss_pred cCCCcEEEE-Ec-CCcEEEEECCCceeeeeeecC---CCCCC---CeEEEEECCCCC
Q 001184 974 HSDQVRLLV-NH-ETQLAIYDGSKMECIRQWVPQ---DVLSS---PISSAAYSCNSQ 1022 (1130)
Q Consensus 974 s~d~~~l~~-~~-d~~i~v~d~~~~~~~~~~~~~---~~~~~---~v~~v~~s~dg~ 1022 (1130)
.+....|.+ |+ ++.+.-.|.. |..+..+... ++... ..-.++..++|.
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~ 296 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGN 296 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCC
Confidence 865444444 54 4455555554 4434443222 11111 234566666665
No 422
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.58 E-value=5.2 Score=48.52 Aligned_cols=99 Identities=9% Similarity=0.131 Sum_probs=58.9
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCC
Q 001184 408 SSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSG 487 (1130)
Q Consensus 408 h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~ 487 (1130)
....|..|.+||+|++||..|..| |.|-.+... ......+.+-...|.|=.+.-+.. +.+
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r--~g~~~~~~~g~~~i~Crt~~v~~~---~~~-------------- 142 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRG-VVVLELPRR--WGKNGEFEDGKKEINCRTVPVDER---FFT-------------- 142 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCc-EEEEEeccc--cCccccccCCCcceeEEEEEechh---hcc--------------
Confidence 456899999999999999998876 444444220 000001222223343333332222 111
Q ss_pred CeeeEecCCCcCEEEEeecccC-CccEEEEEecCCcEEEEEccCCc
Q 001184 488 RKLFQFEGHEAPVYSVCPHQKE-NIHFIFSTAVDGKIKAWLYDNVG 532 (1130)
Q Consensus 488 ~~~~~~~~h~~~v~~~~~~~~~-~~~~l~s~s~dg~i~vwd~~~~~ 532 (1130)
..+...|..+.|+|.. ++..|+.-..|+++|+||+....
T Consensus 143 ------~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 143 ------SNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred ------CCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 1245667788888764 45677888888999999886543
No 423
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.46 E-value=0.072 Score=52.17 Aligned_cols=143 Identities=11% Similarity=0.034 Sum_probs=78.1
Q ss_pred EEEEEecCCcEEEEEccCCcceeeec-CCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCC-CceeEEEecccCce
Q 001184 513 FIFSTAVDGKIKAWLYDNVGSRVDYD-APGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE-GALKRTYIGFRKKS 590 (1130)
Q Consensus 513 ~l~s~s~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~ 590 (1130)
.+...+.||.|+-++++.......-. .+... .....-+..+++++. +|.|++|.... +.....+.......
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~----dg~v~~~n~n~~g~~~d~~~s~~e~i 104 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTS----DGAVYVFNWNLEGAHSDRVCSGEESI 104 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecc----cceEEEecCCccchHHHhhhcccccc
Confidence 35556778888877766433222110 01111 122223455666654 88899888652 22222222112212
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEE--eCCCcEEEEEcCC
Q 001184 591 AGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVT--TADQGIKILANAD 663 (1130)
Q Consensus 591 v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~--~~dg~i~iw~~~~ 663 (1130)
...+....++.+..+++.||.||.|+....+.+.....+... ++.....+..+++++.+ +.|..++.|++..
T Consensus 105 ~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~-~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 105 DLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFE-SGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeccccccccceeEEeccCCceeeeccccCceeeeeccccCC-CcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 222333445567888999999999999988887776655432 33333444445555555 6666666666543
No 424
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.38 E-value=0.015 Score=67.20 Aligned_cols=255 Identities=11% Similarity=0.162 Sum_probs=131.9
Q ss_pred CCCCceeEEEEecCC-CEEEEEeCCeEEEEECC--CceeEEEEe-----CCCCC---eEEEEEeCCCCcEEEEEeCCCcE
Q 001184 831 NAEDVVPCVALSKND-SYVMSAGGGKVSLFNMM--NFKVMTTFM-----SPPPA---STFLAFHPQDNNIIAIGMEDSTI 899 (1130)
Q Consensus 831 ~~~~~i~~l~~s~dg-~~la~~~dg~i~iwd~~--~~~~~~~~~-----~~~~~---i~~l~~sp~~~~~lasg~~dg~v 899 (1130)
+..+.+..++|.... ..+. -.-|.+.||++. .|+....+. ..... |.-.-|.+ +.-++..+..+++|
T Consensus 130 gf~G~v~dl~fah~~~pk~~-~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~-~~~~ic~~~~~~~i 207 (1283)
T KOG1916|consen 130 GFPGGVGDLQFAHTKCPKGR-RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAV-NKVYICYGLKGGEI 207 (1283)
T ss_pred cCCCCcccccccccCChHHH-HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeeccccc-ccceeeeccCCCce
Confidence 455666666663211 1111 112678888864 344333322 11222 33334444 55778888889999
Q ss_pred EEEEeecCeEEEEEecCCCCeeEEE-----------EccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCe
Q 001184 900 QIYNVRVDEVKTKLKGHQKHITGLA-----------FSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGE 968 (1130)
Q Consensus 900 ~iwd~~~~~~~~~l~~h~~~V~~l~-----------~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v 968 (1130)
++....+... ..+.+|...++.++ .||||..++.++.||.+++|.+--..+....+......|...+-
T Consensus 208 ~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~ 286 (1283)
T KOG1916|consen 208 RLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPR 286 (1283)
T ss_pred eEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCc
Confidence 9877664432 34556877766654 48999999999999999999876533333333333333322222
Q ss_pred EEEEEcCCC---------cEEEEE--cCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCE------------EE
Q 001184 969 TRVQFHSDQ---------VRLLVN--HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQL------------IY 1025 (1130)
Q Consensus 969 ~~~~~s~d~---------~~l~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~------------l~ 1025 (1130)
.|.-++... .+++++ -+..+++|.....+|...+. ...|..+. -+||+. ++
T Consensus 287 vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~-----~d~v~iV~-p~~~~v~~~~~~~~~~~~~v 360 (1283)
T KOG1916|consen 287 VCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDKL-----IDGVQIVG-PHDGEVTDLSMCQWMTTRLV 360 (1283)
T ss_pred eeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhhhhc-----ccceEeec-CCCccccchhhhHHHHHHHH
Confidence 333343321 133333 25678888887777662221 22444444 334442 22
Q ss_pred EEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCC--CCCEEEEEeC-CCcEEEEeCCCCccCCccc
Q 001184 1026 ATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQ--EPNQLAVGLT-DGSVKVIEPSETERKWGVA 1102 (1130)
Q Consensus 1026 t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~-Dg~v~vW~~~~~~~~w~~~ 1102 (1130)
..+-|+.|.+|.-..-.......++. +|.+...-..-+|. +.-.+.+|+. ...+.+|-....+. |-.+
T Consensus 361 ~r~v~~~i~~~qn~~a~~~~vs~~~~--------~hpV~S~i~v~S~~R~~h~e~~~~~~~nr~~~i~~s~g~~g-~ls~ 431 (1283)
T KOG1916|consen 361 SRSVDGTIKIWQNRKAQPLVVSRPHD--------GHPVLSAIFVTSPERPDHIELITGGPLNRELKIWVSAGEEG-WLSP 431 (1283)
T ss_pred HhhhHHHHHHhhcchhhhhhhhhhhh--------cceeccccccccCCCccccccccCCcchhhhhhhhhccccc-ccch
Confidence 34457888888543322222222222 23333322233332 2234455554 45677776654443 6443
Q ss_pred c
Q 001184 1103 V 1103 (1130)
Q Consensus 1103 ~ 1103 (1130)
+
T Consensus 432 a 432 (1283)
T KOG1916|consen 432 A 432 (1283)
T ss_pred h
Confidence 3
No 425
>PHA03098 kelch-like protein; Provisional
Probab=94.30 E-value=1.6 Score=52.24 Aligned_cols=194 Identities=11% Similarity=0.093 Sum_probs=95.7
Q ss_pred CCcEEEEEeCCC------cEEEEEeecCeEEEE--EecCCCCeeEEEEccCCCeEEEEeCC-----CcEEEEECCCCccc
Q 001184 886 DNNIIAIGMEDS------TIQIYNVRVDEVKTK--LKGHQKHITGLAFSTNLNILVSSGSD-----AQLIFWNTDTWEKR 952 (1130)
Q Consensus 886 ~~~~lasg~~dg------~v~iwd~~~~~~~~~--l~~h~~~V~~l~~s~dg~~L~s~s~D-----g~i~vwd~~~~~~~ 952 (1130)
++.+++.|+.++ .+..||..+.+-... +.........+ .-+++..+.||.+ ..+..||..+++..
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT--VFNNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE--EECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 455666665442 467777776543221 11111111222 2366777777765 34778888775433
Q ss_pred ceeeEeccCCCCCCCeEEEEEcCCCcEEEEEc---C----CcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEE
Q 001184 953 KSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH---E----TQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIY 1025 (1130)
Q Consensus 953 ~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~---d----~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~ 1025 (1130)
.......+. .-.+++ .-++.+.+.|. + +.+..||..+.+-...-..... .... + +...++++.+
T Consensus 372 ~~~~lp~~r-----~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~-r~~~-~-~~~~~~~iyv 442 (534)
T PHA03098 372 EEPPLIFPR-----YNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPIS-HYGG-C-AIYHDGKIYV 442 (534)
T ss_pred eCCCcCcCC-----ccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCcc-ccCc-e-EEEECCEEEE
Confidence 222111111 111222 23455555532 1 4588999887654332111111 1111 2 2234677777
Q ss_pred EEeCC--------CcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCC-----CcEEEEeC
Q 001184 1026 ATFTD--------GSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTD-----GSVKVIEP 1092 (1130)
Q Consensus 1026 t~~~D--------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D-----g~v~vW~~ 1092 (1130)
.|+.+ ..+.+||..+++....-... .+.. .+ .. +.. ++.+++.||.+ +.|.++|+
T Consensus 443 ~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~--~~r~---~~---~~-~~~---~~~iyv~GG~~~~~~~~~v~~yd~ 510 (534)
T PHA03098 443 IGGISYIDNIKVYNIVESYNPVTNKWTELSSLN--FPRI---NA---SL-CIF---NNKIYVVGGDKYEYYINEIEVYDD 510 (534)
T ss_pred ECCccCCCCCcccceEEEecCCCCceeeCCCCC--cccc---cc---eE-EEE---CCEEEEEcCCcCCcccceeEEEeC
Confidence 77643 23888998887654322111 1111 11 11 222 46788888765 46788888
Q ss_pred CCCccCCccccc
Q 001184 1093 SETERKWGVAVP 1104 (1130)
Q Consensus 1093 ~~~~~~w~~~~p 1104 (1130)
.+.. |....+
T Consensus 511 ~~~~--W~~~~~ 520 (534)
T PHA03098 511 KTNT--WTLFCK 520 (534)
T ss_pred CCCE--EEecCC
Confidence 7665 976544
No 426
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.28 E-value=1.1 Score=52.36 Aligned_cols=111 Identities=14% Similarity=0.169 Sum_probs=74.9
Q ss_pred CeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEec-CCCcCEEEEeecccCCccEEEEEecCCcEEEEEc-----
Q 001184 456 GVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFE-GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLY----- 528 (1130)
Q Consensus 456 ~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~----- 528 (1130)
...-+.-|.-++ ..+.-+....+.||| ..+.....-. ...+.|.++.|...++++.+++.|..+.|.++--
T Consensus 31 ~~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIKK--IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccCc--EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 344455555555 444455556899999 4444332222 4578999999999999999999999999999842
Q ss_pred cCCcc----ee--eecC-CCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeC
Q 001184 529 DNVGS----RV--DYDA-PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNE 574 (1130)
Q Consensus 529 ~~~~~----~~--~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1130)
....+ +. .+.. ..++|....|.++|..++.+ .+++.++|-
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s------GNqlfv~dk 155 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS------GNQLFVFDK 155 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe------CCEEEEECC
Confidence 12111 11 2222 33678999999999888776 457888874
No 427
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.27 E-value=0.88 Score=51.24 Aligned_cols=155 Identities=12% Similarity=0.165 Sum_probs=90.7
Q ss_pred CCeEEEEEeCCCCcEEEEEe--CCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCC----CeEEEEeCCCcEEEEECCC
Q 001184 875 PASTFLAFHPQDNNIIAIGM--EDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNL----NILVSSGSDAQLIFWNTDT 948 (1130)
Q Consensus 875 ~~i~~l~~sp~~~~~lasg~--~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg----~~L~s~s~Dg~i~vwd~~~ 948 (1130)
.++..++|.. +.+++.+.- .+|.+++=| .+.+..| ..|.++.|+|-+ ..|...-..+.|.||-+..
T Consensus 20 HPvhGlaWTD-GkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWTD-GKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEecC-CCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 4577888885 556555543 334433322 2334444 448999999853 3566667788899999874
Q ss_pred CcccceeeE--eccCC--CCCCCeEEEEEcCCCcEEEE-EcCCcEEEEECCCce-eee-eeecCCCCCCCeEEEEECCCC
Q 001184 949 WEKRKSIAI--QLPAG--KLPVGETRVQFHSDQVRLLV-NHETQLAIYDGSKME-CIR-QWVPQDVLSSPISSAAYSCNS 1021 (1130)
Q Consensus 949 ~~~~~~~~~--~~~~~--~~~~~v~~~~~s~d~~~l~~-~~d~~i~v~d~~~~~-~~~-~~~~~~~~~~~v~~v~~s~dg 1021 (1130)
......... +..+. ..+.-.....|+|....|++ .....-.++++.... .++ .+.. .+.|.|.||.+||
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~----~G~IhCACWT~DG 167 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKT----SGLIHCACWTKDG 167 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccC----CceEEEEEecCcC
Confidence 322222211 11111 11223346789999999988 333333455554322 222 2222 5789999999999
Q ss_pred CEEEEEeC-CCcEEEEeCCCc
Q 001184 1022 QLIYATFT-DGSIGVFDADSL 1041 (1130)
Q Consensus 1022 ~~l~t~~~-Dg~i~vwd~~~~ 1041 (1130)
+.|+++-. .=.-+|||-...
T Consensus 168 ~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 168 QRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred CEEEEEeCCeEEEEEecCchh
Confidence 97776552 334689986544
No 428
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.21 E-value=2.3 Score=41.28 Aligned_cols=179 Identities=11% Similarity=0.065 Sum_probs=97.6
Q ss_pred CCCEEEEEe---CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCe
Q 001184 844 NDSYVMSAG---GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHI 920 (1130)
Q Consensus 844 dg~~la~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V 920 (1130)
||.++.+.+ ...|++||+.+++.+..-.-....+..=-...-+..+.+-.-.+|.-..||.++.+++..+.- .+.=
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y-~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY-EGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhccccc-CCcc
Confidence 455665555 356999999999887765533212111111110233444456788889999998887776652 2334
Q ss_pred eEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEE-EcCCcEEEEECCCceee
Q 001184 921 TGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV-NHETQLAIYDGSKMECI 999 (1130)
Q Consensus 921 ~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~d~~i~v~d~~~~~~~ 999 (1130)
+.++ .|++.|+.++...++++-|.++................ .....+.|- ||...|- =.+..|...+..+|+.+
T Consensus 134 WgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv-~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~ 209 (262)
T COG3823 134 WGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPV-SKLNELEWV-DGELYANVWQTTRIARIDPDSGRVV 209 (262)
T ss_pred eeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeec-ccccceeee-ccEEEEeeeeecceEEEcCCCCcEE
Confidence 4444 46777888877778888888775544333322211100 112222222 2333221 23444555566666655
Q ss_pred eeeec---------CCCCCCCeEEEEECCCCC-EEEEE
Q 001184 1000 RQWVP---------QDVLSSPISSAAYSCNSQ-LIYAT 1027 (1130)
Q Consensus 1000 ~~~~~---------~~~~~~~v~~v~~s~dg~-~l~t~ 1027 (1130)
.-+.. ...+..-.+.+++.|++. ++++|
T Consensus 210 ~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 210 AWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 44321 122244568899999874 55554
No 429
>PHA03098 kelch-like protein; Provisional
Probab=94.08 E-value=1.6 Score=52.27 Aligned_cols=190 Identities=13% Similarity=0.032 Sum_probs=93.2
Q ss_pred cCCCEEEEEe-C------CeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCC-----CcEEEEEeecCeEE
Q 001184 843 KNDSYVMSAG-G------GKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMED-----STIQIYNVRVDEVK 910 (1130)
Q Consensus 843 ~dg~~la~~~-d------g~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~d-----g~v~iwd~~~~~~~ 910 (1130)
.++..++.|+ + ..+..||..+.+-...-..+......-...- ++.+.+.|+.+ ..+..||..+++-.
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF-NNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE-CCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 4556666665 2 2477888877655322111111111111222 67788888866 34777887765422
Q ss_pred E--EEecCCCCeeEEEEccCCCeEEEEeCC------CcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEE
Q 001184 911 T--KLKGHQKHITGLAFSTNLNILVSSGSD------AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV 982 (1130)
Q Consensus 911 ~--~l~~h~~~V~~l~~s~dg~~L~s~s~D------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 982 (1130)
. .+....... ++ ..-+++..+.||.+ ..+..||..+++...... .+... ...++ ...++...+.
T Consensus 372 ~~~~lp~~r~~~-~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~--~p~~r---~~~~~-~~~~~~iyv~ 443 (534)
T PHA03098 372 EEPPLIFPRYNP-CV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSP--LPISH---YGGCA-IYHDGKIYVI 443 (534)
T ss_pred eCCCcCcCCccc-eE-EEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCC--CCccc---cCceE-EEECCEEEEE
Confidence 1 111111111 11 22356777777632 357889988754332211 11111 11122 2234555554
Q ss_pred Ec-C--------CcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCC-----CcEEEEeCCCcccc
Q 001184 983 NH-E--------TQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD-----GSIGVFDADSLRLR 1044 (1130)
Q Consensus 983 ~~-d--------~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~D-----g~i~vwd~~~~~~~ 1044 (1130)
|. + ..+.+||..+.+-...-..... ......+. -++++++.|+.+ ..|.+||..+.+..
T Consensus 444 GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~-r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 516 (534)
T PHA03098 444 GGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP-RINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTNTWT 516 (534)
T ss_pred CCccCCCCCcccceEEEecCCCCceeeCCCCCcc-cccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCCEEE
Confidence 32 1 2388899887654332111100 11112222 277877888754 46888888877643
No 430
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.90 E-value=4.7 Score=47.06 Aligned_cols=205 Identities=10% Similarity=0.118 Sum_probs=103.3
Q ss_pred CCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEE
Q 001184 348 SSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVA 427 (1130)
Q Consensus 348 ~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~ 427 (1130)
+++.+|..+|....=++ +..-.|+|+++. |..+.. ++-.|. .+..+.||.+..+|+ .
T Consensus 44 gGpIAV~r~p~~~~~~~--~a~~~I~If~~s-G~lL~~------------------~~w~~~-~lI~mgWs~~eeLI~-v 100 (829)
T KOG2280|consen 44 GGPIAVTRSPSKLVPLY--SARPYIRIFNIS-GQLLGR------------------ILWKHG-ELIGMGWSDDEELIC-V 100 (829)
T ss_pred CCceEEEeccccccccc--ccceeEEEEecc-ccchHH------------------HHhcCC-CeeeecccCCceEEE-E
Confidence 34555555554321111 233468888875 444432 122333 788999998876554 5
Q ss_pred eCCCeEEEEEecCCccceee-eeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCC-CcCEEEEe
Q 001184 428 FTKHLIHLYTYQGSNDLCQS-LEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGH-EAPVYSVC 504 (1130)
Q Consensus 428 ~~d~~i~vwd~~~~~~~~~~-~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h-~~~v~~~~ 504 (1130)
..+|+++||++-... +... .-.......|..+.|..+|= .+.+ .+|.+.+-+ .+...+.++..- ......-|
T Consensus 101 ~k~g~v~Vy~~~ge~-ie~~svg~e~~~~~I~ec~~f~~GV--avlt--~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~ 175 (829)
T KOG2280|consen 101 QKDGTVHVYGLLGEF-IESNSVGFESQMSDIVECRFFHNGV--AVLT--VSGQVILINGVEEPKLRKMPDIPYNELPKSC 175 (829)
T ss_pred eccceEEEeecchhh-hcccccccccccCceeEEEEecCce--EEEe--cCCcEEEEcCCCcchhhhCCCCCCccCCCcc
Confidence 689999999986532 2210 11123334566677766553 3333 345555555 443344443321 11111122
Q ss_pred ecccCC---ccEEEEEe-cCCcEEEEEccCCc-ceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCce
Q 001184 505 PHQKEN---IHFIFSTA-VDGKIKAWLYDNVG-SRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGAL 579 (1130)
Q Consensus 505 ~~~~~~---~~~l~s~s-~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~ 579 (1130)
|.-..+ ...++-.. ..+ ..++..+... ....+......+..+.+||+.++|+.-.. .|.|.+-+....+.
T Consensus 176 Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~----~G~i~~vs~D~~~~ 250 (829)
T KOG2280|consen 176 WTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTE----TGKIWVVSIDLSQI 250 (829)
T ss_pred eeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCceEEEEEEcCCcceEEEEec----CCcEEEEecchhhh
Confidence 211111 11111111 000 0111111111 11122223356788999999999998765 78888888777766
Q ss_pred eEEEec
Q 001184 580 KRTYIG 585 (1130)
Q Consensus 580 ~~~~~~ 585 (1130)
...+..
T Consensus 251 lce~~~ 256 (829)
T KOG2280|consen 251 LCEFNC 256 (829)
T ss_pred hhccCC
Confidence 666553
No 431
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=93.64 E-value=23 Score=43.53 Aligned_cols=198 Identities=14% Similarity=0.115 Sum_probs=112.8
Q ss_pred EEEEEcCCCcEEEEe-cCCCeeeEecCCCcC--------EEEEeecc--------------cCCccEEEEEecCCcEEEE
Q 001184 470 CIVTCGDDKLIRVWD-LSGRKLFQFEGHEAP--------VYSVCPHQ--------------KENIHFIFSTAVDGKIKAW 526 (1130)
Q Consensus 470 ~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~--------v~~~~~~~--------------~~~~~~l~s~s~dg~i~vw 526 (1130)
.++.++.++.|.-.| .+|+.+-++...... ...+.+.. ......++.++.|+.+.-.
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL 275 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL 275 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence 355666667777777 777776665432110 11222221 1233478888889999999
Q ss_pred EccCCcceeeecCCCcc------------EEEEEEec--CCCeEEEeeecCC------CCcEEEEeeCCCCceeEEEecc
Q 001184 527 LYDNVGSRVDYDAPGLW------------CTTMLYSA--DGSRLFSCGTSKE------GDSHLVEWNESEGALKRTYIGF 586 (1130)
Q Consensus 527 d~~~~~~~~~~~~~~~~------------v~~~~~s~--~~~~l~~~~~~~~------~~~~i~~wd~~~~~~~~~~~~~ 586 (1130)
|.++++....+...+.. ...+.-.| .+..+++++...+ .+|.|+-+|.++|+.+-.+...
T Consensus 276 DA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g 355 (764)
T TIGR03074 276 DADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPG 355 (764)
T ss_pred ECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecC
Confidence 99888877655332110 00111112 1345555543222 2688999999999998776521
Q ss_pred c---------C--------ceeEEEEEcCCCCEEEEEe------------------CCCcEEEEeCCCCceeEEEeccCC
Q 001184 587 R---------K--------KSAGVVQFDTTRNRILAAG------------------EDNQIKFWDMDNVNMLTSTEAEGG 631 (1130)
Q Consensus 587 ~---------~--------~~v~~~~~~~~~~~l~~~~------------------~dg~i~vwd~~~~~~~~~~~~~~~ 631 (1130)
. + ..-...++.++...++.+. ..+.|.-.|.++|+..-.++...|
T Consensus 356 ~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~h 435 (764)
T TIGR03074 356 NPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHH 435 (764)
T ss_pred CCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccCC
Confidence 0 0 0012345555555555422 235677788889988776655222
Q ss_pred C-------CCcceEEEcC-CCC---EEEEEeCCCcEEEEEcCCCchh
Q 001184 632 L-------PSLPRLRFNK-EGN---LLVVTTADQGIKILANADGLRA 667 (1130)
Q Consensus 632 ~-------~~i~~v~~s~-~~~---~l~~~~~dg~i~iw~~~~~~~~ 667 (1130)
. ....-+.+.. +|+ .++.++.+|.+.++|-++++..
T Consensus 436 D~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l 482 (764)
T TIGR03074 436 DLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPI 482 (764)
T ss_pred ccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEE
Confidence 1 0111122322 553 7899999999999999998433
No 432
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.39 E-value=2.6 Score=49.49 Aligned_cols=121 Identities=12% Similarity=0.219 Sum_probs=77.7
Q ss_pred EeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEe-cCCCCeeEEEE--ccCCCeEEEEeCCCcEEEEEC
Q 001184 870 FMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLK-GHQKHITGLAF--STNLNILVSSGSDAQLIFWNT 946 (1130)
Q Consensus 870 ~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~-~h~~~V~~l~~--s~dg~~L~s~s~Dg~i~vwd~ 946 (1130)
+...-..++-+.-|. -++..++-+....+.|||...+.+...-. ...+.|.++.| .|||+.+++.|-...|.++.-
T Consensus 25 ~~T~i~~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 25 FETGISNPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred EecCCCCcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 333334455555555 45555555555679999999887543322 35688999988 478999999999999999865
Q ss_pred CCCc----c---cceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEEC
Q 001184 947 DTWE----K---RKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDG 993 (1130)
Q Consensus 947 ~~~~----~---~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~ 993 (1130)
.... . .....+.. ....+.+|.+..|.++|.+++ +.++.+.|+|-
T Consensus 104 ~R~dy~~~~p~w~~i~~i~i-~~~T~h~Igds~Wl~~G~LvV-~sGNqlfv~dk 155 (631)
T PF12234_consen 104 LRYDYTNKGPSWAPIRKIDI-SSHTPHPIGDSIWLKDGTLVV-GSGNQLFVFDK 155 (631)
T ss_pred cchhhhcCCcccceeEEEEe-ecCCCCCccceeEecCCeEEE-EeCCEEEEECC
Confidence 3211 0 01111112 223446788999999997655 45667888874
No 433
>PHA02790 Kelch-like protein; Provisional
Probab=93.36 E-value=3.9 Score=47.87 Aligned_cols=190 Identities=12% Similarity=0.036 Sum_probs=95.2
Q ss_pred CCcEEEEEeCCC-----cEEEEEeecCeEEE--EEecCCCCeeEEEEccCCCeEEEEeCC--CcEEEEECCCCcccceee
Q 001184 886 DNNIIAIGMEDS-----TIQIYNVRVDEVKT--KLKGHQKHITGLAFSTNLNILVSSGSD--AQLIFWNTDTWEKRKSIA 956 (1130)
Q Consensus 886 ~~~~lasg~~dg-----~v~iwd~~~~~~~~--~l~~h~~~V~~l~~s~dg~~L~s~s~D--g~i~vwd~~~~~~~~~~~ 956 (1130)
++.++++|+.++ .+..||..+++-.. .+....... +++ .-+|...+.||.+ ..+..||..+++...
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~--- 345 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVN--- 345 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EECCEEEEECCcCCCCceEEEECCCCeEEE---
Confidence 566777777653 46678877654322 222111111 122 2367777777754 357788876543221
Q ss_pred EeccCCCCCCCeEEEEEcCCCcEEEE-EcC---CcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCc
Q 001184 957 IQLPAGKLPVGETRVQFHSDQVRLLV-NHE---TQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGS 1032 (1130)
Q Consensus 957 ~~~~~~~~~~~v~~~~~s~d~~~l~~-~~d---~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~ 1032 (1130)
.+....+..-.+ +..-+|+..+. |.+ ..+..||..+.+-...-..... ... ..+..-+|++.+.|+ .
T Consensus 346 --~~~l~~~r~~~~-~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~-r~~--~~~~~~~~~IYv~GG---~ 416 (480)
T PHA02790 346 --MPSLLKPRCNPA-VASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYP-HYK--SCALVFGRRLFLVGR---N 416 (480)
T ss_pred --CCCCCCCCcccE-EEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCc-ccc--ceEEEECCEEEEECC---c
Confidence 111111111111 22335555555 322 4577898876654332111110 111 122234677666664 5
Q ss_pred EEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCC-----CcEEEEeCCCCccCCcccc
Q 001184 1033 IGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTD-----GSVKVIEPSETERKWGVAV 1103 (1130)
Q Consensus 1033 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D-----g~v~vW~~~~~~~~w~~~~ 1103 (1130)
+.+||..+.+....-.. +. ......+.+. ++.+.+.||.+ .++..+|+.+.+ |...+
T Consensus 417 ~e~ydp~~~~W~~~~~m----~~----~r~~~~~~v~----~~~IYviGG~~~~~~~~~ve~Yd~~~~~--W~~~~ 478 (480)
T PHA02790 417 AEFYCESSNTWTLIDDP----IY----PRDNPELIIV----DNKLLLIGGFYRGSYIDTIEVYNNRTYS--WNIWD 478 (480)
T ss_pred eEEecCCCCcEeEcCCC----CC----CccccEEEEE----CCEEEEECCcCCCcccceEEEEECCCCe--EEecC
Confidence 78899887765432211 11 1111122222 56788888865 458889988776 86543
No 434
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.14 E-value=19 Score=41.11 Aligned_cols=151 Identities=12% Similarity=0.084 Sum_probs=85.2
Q ss_pred CCeeEEEEecCCCceEEEEEc--CCCcEEEEecCCCeeeEecCCCcCEEEEeecccC--CccEEEEEecCCcEEEEEccC
Q 001184 455 GGVNDLAFSYPNKQLCIVTCG--DDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKE--NIHFIFSTAVDGKIKAWLYDN 530 (1130)
Q Consensus 455 ~~V~~i~~s~d~~~l~l~s~s--~d~~v~iwd~~~~~~~~~~~h~~~v~~~~~~~~~--~~~~l~s~s~dg~i~vwd~~~ 530 (1130)
.+|..++|. ||++ .++|.- ..|.+++=| .+.+ |.-..|..++|.|.. +...+++..-...|.+|.+..
T Consensus 20 HPvhGlaWT-DGkq-VvLT~L~l~~gE~kfGd--s~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQ-VVLTDLQLHNGEPKFGD--SKVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEec-CCCE-EEEEeeeeeCCccccCC--ccEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 468899998 6765 555542 122222222 1122 333458888887653 233566777788999998752
Q ss_pred C-----cceeeecCC-Cc----cEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCC--CceeEEEecccCceeEEEEEcC
Q 001184 531 V-----GSRVDYDAP-GL----WCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE--GALKRTYIGFRKKSAGVVQFDT 598 (1130)
Q Consensus 531 ~-----~~~~~~~~~-~~----~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~--~~~~~~~~~~~~~~v~~~~~~~ 598 (1130)
. +.......+ .. -...+.|.|....|++-.. ...-.++++.. .+....+. ..+.|.|.+|..
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~----~dvSV~~sV~~d~srVkaDi~--~~G~IhCACWT~ 165 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTA----RDVSVLPSVHCDSSRVKADIK--TSGLIHCACWTK 165 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEec----CceeEeeeeeeCCceEEEecc--CCceEEEEEecC
Confidence 1 111111110 00 1245778998888777653 22223344432 23333333 445799999999
Q ss_pred CCCEEEEE-eCCCcEEEEeCCC
Q 001184 599 TRNRILAA-GEDNQIKFWDMDN 619 (1130)
Q Consensus 599 ~~~~l~~~-~~dg~i~vwd~~~ 619 (1130)
||++|+++ +..=.-++||-..
T Consensus 166 DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 166 DGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred cCCEEEEEeCCeEEEEEecCch
Confidence 99987775 3344578898654
No 435
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.03 E-value=4.2 Score=47.41 Aligned_cols=148 Identities=14% Similarity=0.190 Sum_probs=85.0
Q ss_pred CCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcC
Q 001184 896 DSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHS 975 (1130)
Q Consensus 896 dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 975 (1130)
--.|+||+.. |+++..+.-..+++..+.|+.+ ..|++...||++.+|++......... .........|....+..
T Consensus 63 ~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~-eeLI~v~k~g~v~Vy~~~ge~ie~~s---vg~e~~~~~I~ec~~f~ 137 (829)
T KOG2280|consen 63 RPYIRIFNIS-GQLLGRILWKHGELIGMGWSDD-EELICVQKDGTVHVYGLLGEFIESNS---VGFESQMSDIVECRFFH 137 (829)
T ss_pred ceeEEEEecc-ccchHHHHhcCCCeeeecccCC-ceEEEEeccceEEEeecchhhhcccc---cccccccCceeEEEEec
Confidence 3458888864 5666555444457889999965 57778889999999998763332210 00000112233333333
Q ss_pred CCcEEEEEcCC--------cEEEEECCC-------ceeeeeeec----------------------------C--CCCCC
Q 001184 976 DQVRLLVNHET--------QLAIYDGSK-------MECIRQWVP----------------------------Q--DVLSS 1010 (1130)
Q Consensus 976 d~~~l~~~~d~--------~i~v~d~~~-------~~~~~~~~~----------------------------~--~~~~~ 1010 (1130)
.|-.+.+.++. ...+|.... ..+...+.. + ....+
T Consensus 138 ~GVavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~ 217 (829)
T KOG2280|consen 138 NGVAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNS 217 (829)
T ss_pred CceEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCc
Confidence 44333332211 112222111 000000000 0 00135
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccC
Q 001184 1011 PISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIA 1048 (1130)
Q Consensus 1011 ~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~ 1048 (1130)
.+..+.+||+.++|+.=..+|.|.+-+.+..+..+.+.
T Consensus 218 ~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 218 SVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred eEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 67889999999999999999999999999888888876
No 436
>PHA02790 Kelch-like protein; Provisional
Probab=92.93 E-value=3.2 Score=48.58 Aligned_cols=185 Identities=11% Similarity=0.007 Sum_probs=91.0
Q ss_pred cCCCEEEEEe-C-----CeEEEEECCCceeEEEEeCCCCCe-EEEEEeCCCCcEEEEEeCC--CcEEEEEeecCeEE--E
Q 001184 843 KNDSYVMSAG-G-----GKVSLFNMMNFKVMTTFMSPPPAS-TFLAFHPQDNNIIAIGMED--STIQIYNVRVDEVK--T 911 (1130)
Q Consensus 843 ~dg~~la~~~-d-----g~i~iwd~~~~~~~~~~~~~~~~i-~~l~~sp~~~~~lasg~~d--g~v~iwd~~~~~~~--~ 911 (1130)
.++.++++|+ + ..+..||..+++-...-.-..... .+++ .- ++.+.++|+.+ .++..||..+++-. .
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~-~~~iYviGG~~~~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PA-NNKLYVVGGLPNPTSVERWFHGDAAWVNMP 347 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EE-CCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence 3455666665 2 247788887765433221111111 1222 23 67888888864 35788887654322 2
Q ss_pred EEecCCCCeeEEEEccCCCeEEEEeCCC---cEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcE
Q 001184 912 KLKGHQKHITGLAFSTNLNILVSSGSDA---QLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQL 988 (1130)
Q Consensus 912 ~l~~h~~~V~~l~~s~dg~~L~s~s~Dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i 988 (1130)
.+....... .+..-+|+..+.||.++ .+..||..+.+.........+. .-.+ +..-+|+..+.| |.+
T Consensus 348 ~l~~~r~~~--~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r-----~~~~-~~~~~~~IYv~G--G~~ 417 (480)
T PHA02790 348 SLLKPRCNP--AVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH-----YKSC-ALVFGRRLFLVG--RNA 417 (480)
T ss_pred CCCCCCccc--EEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc-----ccce-EEEECCEEEEEC--Cce
Confidence 222111111 12233677777777653 4678888765432221111111 1111 223455555555 356
Q ss_pred EEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCC-----CcEEEEeCCCcc
Q 001184 989 AIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD-----GSIGVFDADSLR 1042 (1130)
Q Consensus 989 ~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~D-----g~i~vwd~~~~~ 1042 (1130)
.+||..+.+-...-.... .......+ .-+|++.+.|+.+ ..+.+||..+++
T Consensus 418 e~ydp~~~~W~~~~~m~~-~r~~~~~~--v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 418 EFYCESSNTWTLIDDPIY-PRDNPELI--IVDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred EEecCCCCcEeEcCCCCC-CccccEEE--EECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 788887655432211111 01122222 2367888888754 346677766554
No 437
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=92.93 E-value=12 Score=38.21 Aligned_cols=203 Identities=13% Similarity=0.081 Sum_probs=126.1
Q ss_pred CeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCccccee
Q 001184 876 ASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSI 955 (1130)
Q Consensus 876 ~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~ 955 (1130)
.-..++-+| ||..-.++...|.|--.|-.+|+....--+....-..|..-|||..-++-+.. -|.-.|-++.+ ..
T Consensus 63 ap~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~e---vt 137 (353)
T COG4257 63 APFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLE---VT 137 (353)
T ss_pred CccccccCC-CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccc---eE
Confidence 345677788 88888888888888888888998776655555566778889998877765544 35555555543 22
Q ss_pred eEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEE
Q 001184 956 AIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGV 1035 (1130)
Q Consensus 956 ~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~v 1035 (1130)
...++..+.........|.++|.+..++..|.---.|... ..+..+.... ...-+.||..|||..-++.-.+..|..
T Consensus 138 ~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~-~~i~vfpaPq--G~gpyGi~atpdGsvwyaslagnaiar 214 (353)
T COG4257 138 RFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPAR-NVISVFPAPQ--GGGPYGICATPDGSVWYASLAGNAIAR 214 (353)
T ss_pred EeecccccCCCcccceeeCCCccEEEeeccccceecCccc-CceeeeccCC--CCCCcceEECCCCcEEEEeccccceEE
Confidence 3444445555788899999999998885432211111111 1122222221 345678999999999888888888888
Q ss_pred EeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCc
Q 001184 1036 FDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETE 1096 (1130)
Q Consensus 1036 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~~~~ 1096 (1130)
-|-.++.. ..+.....+. .. .- -.|+..-+..-+|....+.+.-+|.+...
T Consensus 215 idp~~~~a-ev~p~P~~~~-----~g---sR-riwsdpig~~wittwg~g~l~rfdPs~~s 265 (353)
T COG4257 215 IDPFAGHA-EVVPQPNALK-----AG---SR-RIWSDPIGRAWITTWGTGSLHRFDPSVTS 265 (353)
T ss_pred cccccCCc-ceecCCCccc-----cc---cc-ccccCccCcEEEeccCCceeeEeCccccc
Confidence 88777632 2222111100 00 11 12332235666676667778777776555
No 438
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=92.55 E-value=23 Score=40.36 Aligned_cols=232 Identities=8% Similarity=0.063 Sum_probs=106.2
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCC
Q 001184 409 SISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGR 488 (1130)
Q Consensus 409 ~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~ 488 (1130)
...|..+.+.-.|.+. +|+.|| +..||..+++.+.. .......+|..+.-.-.|+ +..|+.+| |.+.+..|.
T Consensus 164 d~~V~aLv~D~~g~lW-vgT~dG-L~~fd~~~gkalql--~s~~~dk~I~al~~d~qg~---LWVGTdqG-v~~~e~~G~ 235 (671)
T COG3292 164 DTPVVALVFDANGRLW-VGTPDG-LSYFDAGRGKALQL--ASPPLDKAINALIADVQGR---LWVGTDQG-VYLQEAEGW 235 (671)
T ss_pred CccceeeeeeccCcEE-EecCCc-ceEEccccceEEEc--CCCcchhhHHHHHHHhcCc---EEEEeccc-eEEEchhhc
Confidence 4578889998888554 577777 77888888765542 1122235677777777776 56666554 666665553
Q ss_pred eeeEec--CCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecC---CCccEEEEEEecCCCeEEEeeecC
Q 001184 489 KLFQFE--GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA---PGLWCTTMLYSADGSRLFSCGTSK 563 (1130)
Q Consensus 489 ~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1130)
...... -..+.|..+.- +.. ..+..|+..|..+. ............. .-..|.++....+|..-+...
T Consensus 236 ~~sn~~~~lp~~~I~ll~q--D~q-G~lWiGTenGl~r~-~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGsLWv~t~--- 308 (671)
T COG3292 236 RASNWGPMLPSGNILLLVQ--DAQ-GELWIGTENGLWRT-RLPRQGLQIPLSKMHLGVSTVNSLWLDTDGSLWVGTY--- 308 (671)
T ss_pred cccccCCCCcchheeeeec--ccC-CCEEEeecccceeE-ecCCCCccccccccCCccccccceeeccCCCEeeecc---
Confidence 222211 12233433321 222 24555665555332 2222222221111 112455666666776554431
Q ss_pred CCCcEEEEeeCCCCceeEEEecccCceeEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEc
Q 001184 564 EGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDT--TRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFN 641 (1130)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s 641 (1130)
.+.++ +..........+....+..+..++..| .+..+--...-|.+.+-+-.+|..+.....-.+ ..|+.+.+.
T Consensus 309 --~giv~-~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg-~nit~~~~d 384 (671)
T COG3292 309 --GGIVR-YLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRG-MNITTTLED 384 (671)
T ss_pred --CceEE-EecchhhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccc-cccchhhhc
Confidence 22222 222222222222222221222222222 112222222334455555556665554322221 245555565
Q ss_pred CCCCEEEEEeCCCcEEEEE
Q 001184 642 KEGNLLVVTTADQGIKILA 660 (1130)
Q Consensus 642 ~~~~~l~~~~~dg~i~iw~ 660 (1130)
.++. +-.++...-+..|+
T Consensus 385 ~~g~-lWlgs~q~GLsrl~ 402 (671)
T COG3292 385 SRGR-LWLGSMQNGLSRLD 402 (671)
T ss_pred cCCc-EEEEecccchhhhc
Confidence 5443 44444443333444
No 439
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.47 E-value=7.1 Score=48.81 Aligned_cols=147 Identities=12% Similarity=0.258 Sum_probs=95.7
Q ss_pred eCCCcEEEEEeecCeEEEEEecCCCCeeEEEE--------ccCCCeEEEEeCCCcEEEEECCCCcccceeeE---eccCC
Q 001184 894 MEDSTIQIYNVRVDEVKTKLKGHQKHITGLAF--------STNLNILVSSGSDAQLIFWNTDTWEKRKSIAI---QLPAG 962 (1130)
Q Consensus 894 ~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~--------s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~---~~~~~ 962 (1130)
+-|+.+.+|+.+++.....+.+-+..|..|.. -|.=++|...+.--.|.++-+.-.+....... ...-.
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 35788999999997777777776667777654 33334555555555677776654333221111 11111
Q ss_pred CCCCCeEEEEEcCCCcEEEEEcCCcEE--EEECCCc---e-e-------------eeeeecC-CCCCCCeEEEEECCCCC
Q 001184 963 KLPVGETRVQFHSDQVRLLVNHETQLA--IYDGSKM---E-C-------------IRQWVPQ-DVLSSPISSAAYSCNSQ 1022 (1130)
Q Consensus 963 ~~~~~v~~~~~s~d~~~l~~~~d~~i~--v~d~~~~---~-~-------------~~~~~~~-~~~~~~v~~v~~s~dg~ 1022 (1130)
..+..+.++....+|+.+.+|.|+.++ +|...+| + + +..+..- ..+..+|..+++....+
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~ 255 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRN 255 (1311)
T ss_pred cCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccc
Confidence 223678899999999999999998655 2332221 1 0 0111111 23467999999999999
Q ss_pred EEEEEeCCCcEEEEeCCC
Q 001184 1023 LIYATFTDGSIGVFDADS 1040 (1130)
Q Consensus 1023 ~l~t~~~Dg~i~vwd~~~ 1040 (1130)
.|.+-++.|+|.+||+..
T Consensus 256 IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 256 ILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eeeeeccCceEEEEEccC
Confidence 999999999999999987
No 440
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=92.25 E-value=21 Score=39.35 Aligned_cols=188 Identities=15% Similarity=0.177 Sum_probs=105.7
Q ss_pred EEEEEcCCCcEEEEecCCCeeeEecCCCcCEEEEeec--ccCCccE--EEEEe-cC---CcEEEEEccCCccee-eecC-
Q 001184 470 CIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPH--QKENIHF--IFSTA-VD---GKIKAWLYDNVGSRV-DYDA- 539 (1130)
Q Consensus 470 ~l~s~s~d~~v~iwd~~~~~~~~~~~h~~~v~~~~~~--~~~~~~~--l~s~s-~d---g~i~vwd~~~~~~~~-~~~~- 539 (1130)
+++...+++-+.+||+.|+.+..+. .++++.+.+. ..-++.. |+.++ .+ .+|++|.++...... .+..
T Consensus 70 lIigTdK~~GL~VYdL~Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~~~ 147 (381)
T PF02333_consen 70 LIIGTDKKGGLYVYDLDGKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVTDP 147 (381)
T ss_dssp EEEEEETTTEEEEEETTS-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-CBT
T ss_pred eEEEEeCCCCEEEEcCCCcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcCCC
Confidence 6788888899999999999998885 2455544432 1112222 33443 32 469999887432222 2221
Q ss_pred ------CCccEEEEEEe--c-CCCeEEEeeecCCCCcEEEEeeCC---CC----ceeEEEecccCceeEEEEEcCCCCEE
Q 001184 540 ------PGLWCTTMLYS--A-DGSRLFSCGTSKEGDSHLVEWNES---EG----ALKRTYIGFRKKSAGVVQFDTTRNRI 603 (1130)
Q Consensus 540 ------~~~~v~~~~~s--~-~~~~l~~~~~~~~~~~~i~~wd~~---~~----~~~~~~~~~~~~~v~~~~~~~~~~~l 603 (1130)
.-..++.+|+- + +|.+.+.... .+|.+..|.+. .+ ++++.|.... .+..|.......+|
T Consensus 148 ~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~---k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s--Q~EGCVVDDe~g~L 222 (381)
T PF02333_consen 148 AAPIATDLSEPYGLCLYRSPSTGALYAFVNG---KDGRVEQYELTDDGDGKVSATLVREFKVGS--QPEGCVVDDETGRL 222 (381)
T ss_dssp TC-EE-SSSSEEEEEEEE-TTT--EEEEEEE---TTSEEEEEEEEE-TTSSEEEEEEEEEE-SS---EEEEEEETTTTEE
T ss_pred CcccccccccceeeEEeecCCCCcEEEEEec---CCceEEEEEEEeCCCCcEeeEEEEEecCCC--cceEEEEecccCCE
Confidence 11236677763 3 4665554442 25666666553 33 4567776533 57778888888899
Q ss_pred EEEeCCCcEEEEeCCCC-----ceeEEEeccCCCCCcceEEEc--CCC--CEEEEEeCCCcEEEEEcCCC
Q 001184 604 LAAGEDNQIKFWDMDNV-----NMLTSTEAEGGLPSLPRLRFN--KEG--NLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 604 ~~~~~dg~i~vwd~~~~-----~~~~~~~~~~~~~~i~~v~~s--~~~--~~l~~~~~dg~i~iw~~~~~ 664 (1130)
+.+-++.-|.-|+.+.. +.+.......-...+-.+++- .++ -+|++.-.+++..+|+....
T Consensus 223 YvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 223 YVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred EEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 99999988888887632 222222222222345566653 333 34555556778999997643
No 441
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=92.22 E-value=23 Score=39.78 Aligned_cols=151 Identities=9% Similarity=0.090 Sum_probs=86.1
Q ss_pred EEEEEeCCCCcEEEEEeCCCcEE-EEEeecC--eEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccce
Q 001184 878 TFLAFHPQDNNIIAIGMEDSTIQ-IYNVRVD--EVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKS 954 (1130)
Q Consensus 878 ~~l~~sp~~~~~lasg~~dg~v~-iwd~~~~--~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~ 954 (1130)
..+..++ ++.+++++. .|.+. -||--.. +.+ . ......++++.|.+++..++++ .+|.+ +|..+.++.-..
T Consensus 242 ~~v~~~~-dG~~~~vg~-~G~~~~s~d~G~~~W~~~-~-~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~ 315 (398)
T PLN00033 242 STVNRSP-DGDYVAVSS-RGNFYLTWEPGQPYWQPH-N-RASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEED 315 (398)
T ss_pred eeEEEcC-CCCEEEEEC-CccEEEecCCCCcceEEe-c-CCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCcccc
Confidence 3445566 677776664 34433 3332111 111 1 2234568999999998877655 56654 444444321110
Q ss_pred -eeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcE
Q 001184 955 -IAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSI 1033 (1130)
Q Consensus 955 -~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i 1033 (1130)
.............+..+.|.+++..++++..|.+.... ..|+.-.............+.+.|.++++.+++|. +|.|
T Consensus 316 ~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~-~G~i 393 (398)
T PLN00033 316 FDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGN-DGVL 393 (398)
T ss_pred cceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEeC-CcEE
Confidence 01111111122458889999999999999888766654 44544333332222246789999988877776654 8887
Q ss_pred EEE
Q 001184 1034 GVF 1036 (1130)
Q Consensus 1034 ~vw 1036 (1130)
.-|
T Consensus 394 l~~ 396 (398)
T PLN00033 394 LRY 396 (398)
T ss_pred EEe
Confidence 765
No 442
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.06 E-value=1.9 Score=47.59 Aligned_cols=93 Identities=14% Similarity=0.089 Sum_probs=61.7
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEe---------CCCccc--ccccCCCcccccCCCCCceeeeEEEEEcCCC--C
Q 001184 1009 SSPISSAAYSCNSQLIYATFTDGSIGVFD---------ADSLRL--RCRIAPSAYMSQASPNSQTVFPLVVTSHPQE--P 1075 (1130)
Q Consensus 1009 ~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd---------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 1075 (1130)
.-.|..+..++.|..++.++.+|.+.++= ++.|+. .|+...-. ......+.++....++|+|+. .
T Consensus 103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~--~~~ftss~~ltl~Qa~WHP~S~~D 180 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVA--ERFFTSSTSLTLKQAAWHPSSILD 180 (741)
T ss_pred eEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeeccc--ceeeccCCceeeeeccccCCccCC
Confidence 44678888999999999999999766553 223322 22221100 000012245777889999974 4
Q ss_pred CEEEEEeCCCcEEEEeCCCCccCCcccc
Q 001184 1076 NQLAVGLTDGSVKVIEPSETERKWGVAV 1103 (1130)
Q Consensus 1076 ~~l~s~~~Dg~v~vW~~~~~~~~w~~~~ 1103 (1130)
..|+.-+.|..|++|++++...-|-...
T Consensus 181 ~hL~iL~sdnviRiy~lS~~telylqpg 208 (741)
T KOG4460|consen 181 PHLVLLTSDNVIRIYSLSEPTELYLQPG 208 (741)
T ss_pred ceEEEEecCcEEEEEecCCcchhhccCC
Confidence 5677778899999999999988884433
No 443
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=91.93 E-value=6.5 Score=44.18 Aligned_cols=148 Identities=10% Similarity=0.044 Sum_probs=79.5
Q ss_pred CCeEEEEEeCCCCcEEEEEe-----------CCC-cEEEEEeec--Ce--EEEEEecCCCCeeEEEEccCCCeEEEEeCC
Q 001184 875 PASTFLAFHPQDNNIIAIGM-----------EDS-TIQIYNVRV--DE--VKTKLKGHQKHITGLAFSTNLNILVSSGSD 938 (1130)
Q Consensus 875 ~~i~~l~~sp~~~~~lasg~-----------~dg-~v~iwd~~~--~~--~~~~l~~h~~~V~~l~~s~dg~~L~s~s~D 938 (1130)
.....|+|.+ +++++++-. ..+ .|.+++-.+ ++ ....+.........|++.++| .++ ++..
T Consensus 14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCC
Confidence 3466788888 677666542 223 676665432 32 223444344456889999998 444 4444
Q ss_pred CcEEEEECCCCccc----ceeeEeccCC--CCCCCeEEEEEcCCCcEEEE-EcC-------------------CcEEEEE
Q 001184 939 AQLIFWNTDTWEKR----KSIAIQLPAG--KLPVGETRVQFHSDQVRLLV-NHE-------------------TQLAIYD 992 (1130)
Q Consensus 939 g~i~vwd~~~~~~~----~~~~~~~~~~--~~~~~v~~~~~s~d~~~l~~-~~d-------------------~~i~v~d 992 (1130)
...++.+.+..... .......... ........++|.|||.+.++ +.. +.+.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 43334354432111 1111112221 01245678999999987665 311 3355555
Q ss_pred CCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeC
Q 001184 993 GSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFT 1029 (1130)
Q Consensus 993 ~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~ 1029 (1130)
..+++. ..+... -.....++|+++|+++++-..
T Consensus 171 pdg~~~-e~~a~G---~rnp~Gl~~d~~G~l~~tdn~ 203 (367)
T TIGR02604 171 PDGGKL-RVVAHG---FQNPYGHSVDSWGDVFFCDND 203 (367)
T ss_pred cCCCeE-EEEecC---cCCCccceECCCCCEEEEccC
Confidence 554443 222222 245578999999998776543
No 444
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=91.84 E-value=8.2 Score=43.53 Aligned_cols=204 Identities=14% Similarity=0.089 Sum_probs=107.7
Q ss_pred EEEEeCCCcEEEEEeecCeEEEEEecC--CCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCC
Q 001184 890 IAIGMEDSTIQIYNVRVDEVKTKLKGH--QKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVG 967 (1130)
Q Consensus 890 lasg~~dg~v~iwd~~~~~~~~~l~~h--~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 967 (1130)
+.++..+|.|.-.|..+++.+-....- ...+..-.+..+|+ ++.++.++.++..|..+++..-...... . ..
T Consensus 71 v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~----~-~~ 144 (370)
T COG1520 71 VYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGG----S-PY 144 (370)
T ss_pred EEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCC----C-eE
Confidence 444567777777777777654322111 12222233333665 7778888888888887766533322221 0 11
Q ss_pred eEEEEEcCCCcEEEEEcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeC--CCcEEEEeCCCccccc
Q 001184 968 ETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFT--DGSIGVFDADSLRLRC 1045 (1130)
Q Consensus 968 v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~--Dg~i~vwd~~~~~~~~ 1045 (1130)
...-....++..+..+.++.+.-.+..+|+..-...........+..--...++ .++.+.. ++.+.-.|..+|...-
T Consensus 145 ~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~~~~~~~~~a~~~~~G~~~w 223 (370)
T COG1520 145 YASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGSDGYDGILYALNAEDGTLKW 223 (370)
T ss_pred EecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEecCCCcceEEEEEccCCcEee
Confidence 223334445555555567888888888888766544321001111111112233 4444544 5667777888888765
Q ss_pred ccCCCcccccCCC-CCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCccCCccccc
Q 001184 1046 RIAPSAYMSQASP-NSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETERKWGVAVP 1104 (1130)
Q Consensus 1046 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~~~~~~w~~~~p 1104 (1130)
............. ....+..-.+. -+.-+..++.++.+.-.+..+++.+|...++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~v~----v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 224 SQKVSQTIGRTAISTTPAVDGGPVY----VDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred eeeeecccCcccccccccccCceEE----ECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 5432221111000 00011111111 1223467777888999999999999988887
No 445
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=91.66 E-value=27 Score=39.32 Aligned_cols=203 Identities=12% Similarity=0.031 Sum_probs=106.2
Q ss_pred EecCCCEEEEEeCCeEEEEECCCceeEEEEeCCC--CCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCC-
Q 001184 841 LSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPP--PASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQ- 917 (1130)
Q Consensus 841 ~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~--~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~- 917 (1130)
..-||+.++...+|.|.-.|..++..+....... ..+..-.+.. +|+ ++.++.+|.++.+|..+|+.+-......
T Consensus 65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~ 142 (370)
T COG1520 65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGS 142 (370)
T ss_pred EeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-CCe-EEEecccceEEEEECCCCcEEEEEecCCC
Confidence 4456666666568888888888887664433221 2233333333 555 6678899988889988898887776554
Q ss_pred CCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEc--CCcEEEEECCC
Q 001184 918 KHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH--ETQLAIYDGSK 995 (1130)
Q Consensus 918 ~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~--d~~i~v~d~~~ 995 (1130)
..+..-....++ .+...+.++.+.-.+..+++..-....... ....+..-....++...+... ++.+.-.|..+
T Consensus 143 ~~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~---~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~ 218 (370)
T COG1520 143 PYYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAP---LSLSIYGSPAIASGTVYVGSDGYDGILYALNAED 218 (370)
T ss_pred eEEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCc---cccccccCceeecceEEEecCCCcceEEEEEccC
Confidence 112222222233 233333566666666666554222111110 001111111133444444444 45677777777
Q ss_pred ceeeeeeecCCCCC-CCeEEEEECC-----CCCEEEEEeCCCcEEEEeCCCcccccccCC
Q 001184 996 MECIRQWVPQDVLS-SPISSAAYSC-----NSQLIYATFTDGSIGVFDADSLRLRCRIAP 1049 (1130)
Q Consensus 996 ~~~~~~~~~~~~~~-~~v~~v~~s~-----dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~ 1049 (1130)
|............. ..+....... .+.-+..++.++.+...|..+|+.+-+...
T Consensus 219 G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 219 GTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred CcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence 87776632221000 1110011111 122235566678888899999988877664
No 446
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=91.65 E-value=17 Score=40.84 Aligned_cols=148 Identities=11% Similarity=0.117 Sum_probs=87.6
Q ss_pred ceeEEEEecCCCEEEEEeCCeEEE-EECCCcee-EEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCe----
Q 001184 835 VVPCVALSKNDSYVMSAGGGKVSL-FNMMNFKV-MTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDE---- 908 (1130)
Q Consensus 835 ~i~~l~~s~dg~~la~~~dg~i~i-wd~~~~~~-~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~---- 908 (1130)
....+..++||.+++++..|.+.. ||-- ... ...-......++.+.+.+ ++.+++++ .+|.+.. ....++
T Consensus 240 sf~~v~~~~dG~~~~vg~~G~~~~s~d~G-~~~W~~~~~~~~~~l~~v~~~~-dg~l~l~g-~~G~l~~-S~d~G~~~~~ 315 (398)
T PLN00033 240 TFSTVNRSPDGDYVAVSSRGNFYLTWEPG-QPYWQPHNRASARRIQNMGWRA-DGGLWLLT-RGGGLYV-SKGTGLTEED 315 (398)
T ss_pred ceeeEEEcCCCCEEEEECCccEEEecCCC-CcceEEecCCCccceeeeeEcC-CCCEEEEe-CCceEEE-ecCCCCcccc
Confidence 355567889999999998876443 4432 111 111122345688999998 77777655 5666543 334443
Q ss_pred -EEEEEecC--CCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcC
Q 001184 909 -VKTKLKGH--QKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHE 985 (1130)
Q Consensus 909 -~~~~l~~h--~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d 985 (1130)
........ ...+.++.|.+++.. +.++.+|.+.... +.++. ..........+.....+.|.++++.++++.+
T Consensus 316 ~~f~~~~~~~~~~~l~~v~~~~d~~~-~a~G~~G~v~~s~-D~G~t---W~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~ 390 (398)
T PLN00033 316 FDFEEADIKSRGFGILDVGYRSKKEA-WAAGGSGILLRST-DGGKS---WKRDKGADNIAANLYSVKFFDDKKGFVLGND 390 (398)
T ss_pred cceeecccCCCCcceEEEEEcCCCcE-EEEECCCcEEEeC-CCCcc---eeEccccCCCCcceeEEEEcCCCceEEEeCC
Confidence 22222221 234889999987665 4556677666553 33221 1111111222356789999999999999988
Q ss_pred CcEEEE
Q 001184 986 TQLAIY 991 (1130)
Q Consensus 986 ~~i~v~ 991 (1130)
|.|.-|
T Consensus 391 G~il~~ 396 (398)
T PLN00033 391 GVLLRY 396 (398)
T ss_pred cEEEEe
Confidence 887655
No 447
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=91.63 E-value=0.059 Score=58.45 Aligned_cols=238 Identities=13% Similarity=0.120 Sum_probs=134.2
Q ss_pred EEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEE
Q 001184 772 RLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSA 851 (1130)
Q Consensus 772 ~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~ 851 (1130)
...+.+.+.-++.++-+..+..||-.. ..... ....+....+++..+|..+++.
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~ag----------------------q~~le----~n~tg~aldm~wDkegdvlavl 92 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAG----------------------QVILE----LNPTGKALDMAWDKEGDVLAVL 92 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhc----------------------ceecc----cCCchhHhhhhhccccchhhhh
Confidence 345566666677777776766665211 11111 0223445567777788777665
Q ss_pred e--CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCC
Q 001184 852 G--GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNL 929 (1130)
Q Consensus 852 ~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg 929 (1130)
. .+.+.+||+.+......-.+....-.-+.|++ +...++.|...|.+.||+..+.+.+...-.|...++++++.+.+
T Consensus 93 Aek~~piylwd~n~eytqqLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd 171 (615)
T KOG2247|consen 93 AEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED 171 (615)
T ss_pred hhcCCCeeechhhhhhHHHHhccCcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc
Confidence 5 68899999976432221111222223378999 88899999999999999998887766666699999999999876
Q ss_pred CeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeE--EE---EEcCCCcEEEEEcCCcEEE-----EECCCceee
Q 001184 930 NILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGET--RV---QFHSDQVRLLVNHETQLAI-----YDGSKMECI 999 (1130)
Q Consensus 930 ~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~--~~---~~s~d~~~l~~~~d~~i~v-----~d~~~~~~~ 999 (1130)
+.+.++.|..+.+-...+.... ....+..+.... .+ .|..-|..+..--.+...+ -..+....+
T Consensus 172 -~vil~dcd~~L~v~~qegeta~-----ltevggepdnm~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~pval 245 (615)
T KOG2247|consen 172 -YVILCDCDNTLSVTTQEGETAS-----LTEVGGEPDNMDFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDEPVAL 245 (615)
T ss_pred -eeeecCcHHHHHHhhhccceee-----eeeccCccchhhhheeeeeccccccceeeeeeecHHHHHHHhhcCCCCccce
Confidence 5566666665544333321110 111111111111 11 1222233333211111111 111111122
Q ss_pred eeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCccccccc
Q 001184 1000 RQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRI 1047 (1130)
Q Consensus 1000 ~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~ 1047 (1130)
.+... .+.+.|+.|--||.++ -+.+-|.|..-..+++++...+
T Consensus 246 -~fq~~---~gni~cyrwylDg~i~-igf~ag~iV~iS~h~aeLgaef 288 (615)
T KOG2247|consen 246 -QFQEK---YGNIHCYRWYLDGYIL-IGFDAGYIVSISAHNAELGAEF 288 (615)
T ss_pred -Eeeec---CCceeEEEEecccccc-ccccceeEEEEeccchHHHHHH
Confidence 34333 5678889998888644 4666677777778888776554
No 448
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=91.60 E-value=5.9 Score=35.91 Aligned_cols=115 Identities=14% Similarity=0.084 Sum_probs=70.2
Q ss_pred EcCCCcEEEE-EcCCcEEEEECCCce--------eeeeeecCCCCCCCeEEEEECC-----CCCEEEEEeCCCcEEEEeC
Q 001184 973 FHSDQVRLLV-NHETQLAIYDGSKME--------CIRQWVPQDVLSSPISSAAYSC-----NSQLIYATFTDGSIGVFDA 1038 (1130)
Q Consensus 973 ~s~d~~~l~~-~~d~~i~v~d~~~~~--------~~~~~~~~~~~~~~v~~v~~s~-----dg~~l~t~~~Dg~i~vwd~ 1038 (1130)
|......|++ +..++|.|++..... .+..+.. +..|++++--+ +...|+.|+ ...+..||+
T Consensus 6 fDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi----n~~italaaG~l~~~~~~D~LliGt-~t~llaYDV 80 (136)
T PF14781_consen 6 FDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI----NQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV 80 (136)
T ss_pred eCCCceeEEEEecCCEEEEECCCccccccccccCceeEEEC----CCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence 3333334444 567778888765322 2333322 45777775433 334777776 678999999
Q ss_pred CCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCccCCccc
Q 001184 1039 DSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETERKWGVA 1102 (1130)
Q Consensus 1039 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~~~~~~w~~~ 1102 (1130)
.....+..... + ..+.++.+.-....+.-|+..+..+.|.-+|....|..|.+-
T Consensus 81 ~~N~d~Fyke~----~------DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtVt 134 (136)
T PF14781_consen 81 ENNSDLFYKEV----P------DGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTVT 134 (136)
T ss_pred ccCchhhhhhC----c------cceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEec
Confidence 98776544431 1 224555454333334456666668999999999999999763
No 449
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.52 E-value=0.42 Score=55.96 Aligned_cols=163 Identities=18% Similarity=0.239 Sum_probs=94.3
Q ss_pred CCCCEEEEEEe----cCCCeEEEEEeCcCeEEEEeCCC--CceeecccceeeeccccccceeeeeecCCCccEEEEEEcC
Q 001184 346 QGSSVVSMDFH----PFHHTLLVVGCGDGEITLWDVGL--RERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP 419 (1130)
Q Consensus 346 h~~~V~~v~fs----pdg~~llasg~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp 419 (1130)
..+.|-.++|- |.+.. .-|...|||+.- |+......++ +...-...+.-|.|.|
T Consensus 131 f~G~v~dl~fah~~~pk~~~------~vg~lfVy~vd~l~G~iq~~l~v~--------------~~~p~gs~~~~V~wcp 190 (1283)
T KOG1916|consen 131 FPGGVGDLQFAHTKCPKGRR------LVGELFVYDVDVLQGEIQPQLEVT--------------PITPYGSDPQLVSWCP 190 (1283)
T ss_pred CCCCcccccccccCChHHHH------HhhhhheeehHhhccccccceEEe--------------ecCcCCCCcceeeecc
Confidence 55677777774 33331 225788998763 4433221221 1222223334455544
Q ss_pred ---CCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEE-----------ecCCCceEEEEEcCCCcEEEEe-
Q 001184 420 ---DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAF-----------SYPNKQLCIVTCGDDKLIRVWD- 484 (1130)
Q Consensus 420 ---dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~-----------s~d~~~l~l~s~s~d~~v~iwd- 484 (1130)
+.-++..+-.+++|++.++..... ..+.+|...+.+++| ||||+ .++.++.||.+++|.
T Consensus 191 ~~~~~~~ic~~~~~~~i~lL~~~ra~~----~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt--v~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 191 IAVNKVYICYGLKGGEIRLLNINRALR----SLFRSHSQRVTDMAFFAEGVLKLASLSPDGT--VFAWAISDGSVGFYQI 264 (1283)
T ss_pred cccccceeeeccCCCceeEeeechHHH----HHHHhcCCCcccHHHHhhchhhheeeCCCCc--EEEEeecCCccceeee
Confidence 667888888889998877766432 135568887777664 89999 899999999999998
Q ss_pred -cCCC----eeeEecCCCc-CEEEEeecccC-------CccEEEEEec-CCcEEEEEccCCcce
Q 001184 485 -LSGR----KLFQFEGHEA-PVYSVCPHQKE-------NIHFIFSTAV-DGKIKAWLYDNVGSR 534 (1130)
Q Consensus 485 -~~~~----~~~~~~~h~~-~v~~~~~~~~~-------~~~~l~s~s~-dg~i~vwd~~~~~~~ 534 (1130)
.+|+ |++..+.|++ +-.|.-++... --.+++++++ +..+++|.-..-++.
T Consensus 265 yi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 265 YITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred eeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 6664 4556667763 22222222110 0023444443 345788865544444
No 450
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=91.45 E-value=25 Score=38.61 Aligned_cols=149 Identities=14% Similarity=0.156 Sum_probs=87.0
Q ss_pred CCCceeEEEEe-cCCCEEEEEeCCe------EEEEECCC--c-----eeE--EEEeCCCC--------CeEEEEEeCCCC
Q 001184 832 AEDVVPCVALS-KNDSYVMSAGGGK------VSLFNMMN--F-----KVM--TTFMSPPP--------ASTFLAFHPQDN 887 (1130)
Q Consensus 832 ~~~~i~~l~~s-~dg~~la~~~dg~------i~iwd~~~--~-----~~~--~~~~~~~~--------~i~~l~~sp~~~ 887 (1130)
.-+.+..+.+. .++.+++...+|. +..+++.. + ... ..+....+ ..-+|++.+ ++
T Consensus 18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~-~g 96 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPP-DG 96 (326)
T ss_pred ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEec-CC
Confidence 35567888998 4566666665565 55555443 1 111 11111111 234788866 78
Q ss_pred cEEEEEeCC------CcEEEEEeecCeEEEEEe---------------cCCCCeeEEEEccCCCeEEEEeC-----CC--
Q 001184 888 NIIAIGMED------STIQIYNVRVDEVKTKLK---------------GHQKHITGLAFSTNLNILVSSGS-----DA-- 939 (1130)
Q Consensus 888 ~~lasg~~d------g~v~iwd~~~~~~~~~l~---------------~h~~~V~~l~~s~dg~~L~s~s~-----Dg-- 939 (1130)
.++++.-.+ ..|+.++.. |+.+..+. ......-+|+++|||+.|+++.. |+
T Consensus 97 ~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~ 175 (326)
T PF13449_consen 97 SFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPR 175 (326)
T ss_pred CEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcc
Confidence 877776666 678888866 65544431 13345789999999997776644 22
Q ss_pred c-------EEEEECCCCc---ccceeeEeccCC---CCCCCeEEEEEcCCCcEEEE
Q 001184 940 Q-------LIFWNTDTWE---KRKSIAIQLPAG---KLPVGETRVQFHSDQVRLLV 982 (1130)
Q Consensus 940 ~-------i~vwd~~~~~---~~~~~~~~~~~~---~~~~~v~~~~~s~d~~~l~~ 982 (1130)
. ++++..+... ............ .....++.+.+-+++++|+.
T Consensus 176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 1 4555544322 222333332210 13478899999999998887
No 451
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.18 E-value=4.6 Score=39.30 Aligned_cols=188 Identities=15% Similarity=0.133 Sum_probs=100.9
Q ss_pred CCcEEEEEeCC--CcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEE-EeCCCcEEEEECCCCcccceeeEeccCC
Q 001184 886 DNNIIAIGMED--STIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVS-SGSDAQLIFWNTDTWEKRKSIAIQLPAG 962 (1130)
Q Consensus 886 ~~~~lasg~~d--g~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s-~s~Dg~i~vwd~~~~~~~~~~~~~~~~~ 962 (1130)
++.++.+.+.- ..|++||+.+++.+..-.-....+..=-...-|.++.. .=.+|.-..+|.++.+.......
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y----- 129 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY----- 129 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhccccc-----
Confidence 45666666543 36999999999877654322222221111111222222 22477778888887554332211
Q ss_pred CCCCCeEEEEEcCCCcEEEEE-cCCcEEEEECCCceeeeeeecCCC--CCCCeEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 001184 963 KLPVGETRVQFHSDQVRLLVN-HETQLAIYDGSKMECIRQWVPQDV--LSSPISSAAYSCNSQLIYATFTDGSIGVFDAD 1039 (1130)
Q Consensus 963 ~~~~~v~~~~~s~d~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~--~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~ 1039 (1130)
++.- .....|+.-|..+ ...+++.-|.++............ .-..++.+.|- ||.+.|-.=.+..|..-+.+
T Consensus 130 --~GeG--WgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~ 204 (262)
T COG3823 130 --EGEG--WGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPD 204 (262)
T ss_pred --CCcc--eeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCC
Confidence 1222 2333444445543 345566666665544433322100 01223344443 67766666667778888999
Q ss_pred CcccccccCCCcccccCCCCCcee-eeEEEEEcCCCCCEEEEEeC
Q 001184 1040 SLRLRCRIAPSAYMSQASPNSQTV-FPLVVTSHPQEPNQLAVGLT 1083 (1130)
Q Consensus 1040 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~s~~~ 1083 (1130)
+|+....+..+.........+... ....+++.|+.++++++|=.
T Consensus 205 sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~ 249 (262)
T COG3823 205 SGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKL 249 (262)
T ss_pred CCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecCc
Confidence 999888887665544333333322 22357888876677777643
No 452
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=91.02 E-value=47 Score=40.88 Aligned_cols=105 Identities=11% Similarity=0.170 Sum_probs=67.6
Q ss_pred EEEecCCCEEEEEeCCeEEEEECCCceeEEEEe--CCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEee--cCeEEEEEe
Q 001184 839 VALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFM--SPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVR--VDEVKTKLK 914 (1130)
Q Consensus 839 l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~--~~~~~~~l~ 914 (1130)
.|+.|-..++.+|-...+++||+-..++++... .....|+.+++ .+..+++|+..-.|.++..+ ..+++ .+.
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt---~~~RI~VgD~qeSV~~~~y~~~~n~l~-~fa 1014 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT---YGARIVVGDIQESVHFVRYRREDNQLI-VFA 1014 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee---cceEEEEeeccceEEEEEEecCCCeEE-EEe
Confidence 455677778888889999999998777665543 23456777777 55678888877667655444 34433 333
Q ss_pred cC--CCCeeEEEEccCCCeEEEEeCCCcEEEEECCC
Q 001184 915 GH--QKHITGLAFSTNLNILVSSGSDAQLIFWNTDT 948 (1130)
Q Consensus 915 ~h--~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~ 948 (1130)
.. ...|+++.+- |...+|.++.=|.+.+-.+..
T Consensus 1015 dD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1015 DDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred CCCccceeeEEEEe-cCCceeeccccCcEEEEECCC
Confidence 22 2235665554 455777777777776655543
No 453
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=90.68 E-value=1.5 Score=43.03 Aligned_cols=31 Identities=32% Similarity=0.570 Sum_probs=25.6
Q ss_pred ccEEEEEEcCCC------CEEEEEeCCCeEEEEEecC
Q 001184 410 ISVSRVAWSPDG------NFIGVAFTKHLIHLYTYQG 440 (1130)
Q Consensus 410 ~~V~~v~~spdg------~~las~~~d~~i~vwd~~~ 440 (1130)
..|.+++|||-| -+||+.+.++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 379999999954 2788899999999998654
No 454
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=90.55 E-value=19 Score=40.98 Aligned_cols=276 Identities=16% Similarity=0.086 Sum_probs=134.4
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEE
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 424 (1130)
--...|.++.|.-.|. +-.|+.|| +..||..+++.+.... .....+|..+.-+-.|+ |
T Consensus 162 l~d~~V~aLv~D~~g~--lWvgT~dG-L~~fd~~~gkalql~s------------------~~~dk~I~al~~d~qg~-L 219 (671)
T COG3292 162 LKDTPVVALVFDANGR--LWVGTPDG-LSYFDAGRGKALQLAS------------------PPLDKAINALIADVQGR-L 219 (671)
T ss_pred ccCccceeeeeeccCc--EEEecCCc-ceEEccccceEEEcCC------------------CcchhhHHHHHHHhcCc-E
Confidence 3567899999999996 45677665 5677877777654210 01124555555555554 5
Q ss_pred EEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEec-CCC--cCEE
Q 001184 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFE-GHE--APVY 501 (1130)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~-~h~--~~v~ 501 (1130)
-+|+.+| |.+.+.++.+... .. ..-..+.|..+.-..+|. +-.|+..|..+.--.......... -|. ..|.
T Consensus 220 WVGTdqG-v~~~e~~G~~~sn-~~-~~lp~~~I~ll~qD~qG~---lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vn 293 (671)
T COG3292 220 WVGTDQG-VYLQEAEGWRASN-WG-PMLPSGNILLLVQDAQGE---LWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVN 293 (671)
T ss_pred EEEeccc-eEEEchhhccccc-cC-CCCcchheeeeecccCCC---EEEeecccceeEecCCCCccccccccCCcccccc
Confidence 5677777 7777766522111 00 001122333333333333 334444443222112222222221 121 2233
Q ss_pred EEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEec--CCCeEEEeeecCCCCcEEEEeeCCCCce
Q 001184 502 SVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSA--DGSRLFSCGTSKEGDSHLVEWNESEGAL 579 (1130)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~~~~~~~~i~~wd~~~~~~ 579 (1130)
++-. +.+| -|.+++.+|.+++-+-+-..........+..+...+..| .+..+-... ..+.+.+-+..+|..
T Consensus 294 sL~~--D~dG-sLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~n----s~g~L~van~stG~~ 366 (671)
T COG3292 294 SLWL--DTDG-SLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLN----SIGELMVANGSTGEL 366 (671)
T ss_pred ceee--ccCC-CEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeecc----ccceEEEecCCCCcE
Confidence 3322 3332 466666666665533221111111111111111111222 111111111 134455566667777
Q ss_pred eEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEE
Q 001184 580 KRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN-VNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKI 658 (1130)
Q Consensus 580 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~i 658 (1130)
++.........++.+++..+ ..+-.|+...-+-.|+..+ +........ -...+|..+.-.|+++ |..|+.+|.++.
T Consensus 367 v~sv~q~Rg~nit~~~~d~~-g~lWlgs~q~GLsrl~n~n~~avlde~ag-l~ss~V~aived~dns-LWIGTs~Glvk~ 443 (671)
T COG3292 367 VRSVHQLRGMNITTTLEDSR-GRLWLGSMQNGLSRLDNKNEWAVLDEDAG-LPSSEVSAIVEDPDNS-LWIGTSGGLVKR 443 (671)
T ss_pred EEEeeeccccccchhhhccC-CcEEEEecccchhhhccCCcccccccccC-CcccceeeeeecCCCC-EEEeccCCeEec
Confidence 77766556556777777774 4566666665566677666 333322222 2233677787788887 777888887654
No 455
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=90.51 E-value=26 Score=41.51 Aligned_cols=166 Identities=11% Similarity=0.092 Sum_probs=87.3
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeee-ecCCCCeeEEEEecC-----CCceEEEEEc-C-C-Cc
Q 001184 409 SISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEI-DAHVGGVNDLAFSYP-----NKQLCIVTCG-D-D-KL 479 (1130)
Q Consensus 409 ~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~-~~h~~~V~~i~~s~d-----~~~l~l~s~s-~-d-~~ 479 (1130)
.+.|..+.|.++++.+++...+|.|.+||...+...... .+ ..+...|..=.|-++ +..++++.+. . + -.
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~-~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~ 207 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVP-QLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLS 207 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEecccccccccc-ccccccccceehhhhhcccccccCCceEEEEEEcCCCcEE
Confidence 568999999999999999999999999999333211100 11 122222222234332 3333333333 1 2 24
Q ss_pred EEEEec--CCCeeeEec---CCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCC-----C-ccEEEEE
Q 001184 480 IRVWDL--SGRKLFQFE---GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP-----G-LWCTTML 548 (1130)
Q Consensus 480 v~iwd~--~~~~~~~~~---~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-----~-~~v~~~~ 548 (1130)
.+++.. ++..+..+. -+........|... +| .|+-- .+++|.+|.+...+....+... . ..+.++.
T Consensus 208 ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~-~G-~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~ 284 (670)
T PF10395_consen 208 YKLISLSNESSSIFELSSTILENFGLEDSKFCYQ-FG-KLYQL-SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK 284 (670)
T ss_pred EEEEEeccCCcceEEeehheeccCCcccceEEEe-CC-EEEEE-eCCEEEEEEcCCceEEEEEEechhhccccccceEee
Confidence 566664 455554443 12222222222222 22 23333 6789999988776544433222 1 1233443
Q ss_pred EecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEe
Q 001184 549 YSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYI 584 (1130)
Q Consensus 549 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 584 (1130)
--...+.|++. +..|++.|+.-...+..+.
T Consensus 285 ~~s~nRvLLs~------~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 285 PPSPNRVLLSV------NNKIYLLDLKFESILSEFE 314 (670)
T ss_pred cCCCCeEEEEc------CCEEEEEeehhhhhhhhhh
Confidence 33334444444 6789999987555554444
No 456
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=90.46 E-value=0.84 Score=31.85 Aligned_cols=32 Identities=22% Similarity=0.259 Sum_probs=26.2
Q ss_pred CCEEEEEEecCCC--eEEEEEeCcCeEEEEeCCC
Q 001184 348 SSVVSMDFHPFHH--TLLVVGCGDGEITLWDVGL 379 (1130)
Q Consensus 348 ~~V~~v~fspdg~--~llasg~~dg~i~iwd~~~ 379 (1130)
+.|.+++|||+.. .||+..-.-|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 3689999998553 4788888889999999985
No 457
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=90.34 E-value=16 Score=40.27 Aligned_cols=164 Identities=13% Similarity=0.137 Sum_probs=92.7
Q ss_pred CCCeEEEEEeCCCCcEEEEEeCCCc------EEEEEeec--C--eEE-----EEEecCCC--------CeeEEEEccCCC
Q 001184 874 PPASTFLAFHPQDNNIIAIGMEDST------IQIYNVRV--D--EVK-----TKLKGHQK--------HITGLAFSTNLN 930 (1130)
Q Consensus 874 ~~~i~~l~~sp~~~~~lasg~~dg~------v~iwd~~~--~--~~~-----~~l~~h~~--------~V~~l~~s~dg~ 930 (1130)
-+....+.+.++++.+++ .+++|. ++.+++.. + ..+ ..+..-.+ ..-+|++.++|.
T Consensus 19 ~GGlSgl~~~~~~~~~~a-vSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYA-VSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCCCCEEEE-EECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 355788889874555554 455666 55555543 1 111 11222222 234788888888
Q ss_pred eEEEEeCC------CcEEEEECCCCcccceee--Eec-------cCCCCCCCeEEEEEcCCCcEEEEE------cCC--c
Q 001184 931 ILVSSGSD------AQLIFWNTDTWEKRKSIA--IQL-------PAGKLPVGETRVQFHSDQVRLLVN------HET--Q 987 (1130)
Q Consensus 931 ~L~s~s~D------g~i~vwd~~~~~~~~~~~--~~~-------~~~~~~~~v~~~~~s~d~~~l~~~------~d~--~ 987 (1130)
++++.-.+ ..|..++.+ ++...... ... ...........++++|||+.|.+. .|+ .
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 88887777 778888876 44433321 111 122344688999999999955441 122 1
Q ss_pred -------EE--EEECCC-ceeeeeeecCCC------CCCCeEEEEECCCCCEEEEEeC-----CCcEEEEeCC
Q 001184 988 -------LA--IYDGSK-MECIRQWVPQDV------LSSPISSAAYSCNSQLIYATFT-----DGSIGVFDAD 1039 (1130)
Q Consensus 988 -------i~--v~d~~~-~~~~~~~~~~~~------~~~~v~~v~~s~dg~~l~t~~~-----Dg~i~vwd~~ 1039 (1130)
++ .||..+ +.....+.-... ....|+.+.+-+|+++|+.-=. ...++|+.+.
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence 44 455554 333333322211 2568899999999997765322 3455666444
No 458
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.16 E-value=3.2 Score=51.56 Aligned_cols=166 Identities=14% Similarity=0.191 Sum_probs=98.1
Q ss_pred ccceeeeccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEE
Q 001184 337 PRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVA 416 (1130)
Q Consensus 337 ~~~~~~~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 416 (1130)
|.+++..+.|...-+.+-+-|.=.+.-+| .|..+.+|+++++.... .+.+-+..|..|.
T Consensus 68 P~el~eq~~~~~~~~~mGiFpeI~RaWiT--iDn~L~lWny~~~~e~~-------------------~~d~~shtIl~V~ 126 (1311)
T KOG1900|consen 68 PDELLEQFSNIECKTDMGIFPEIGRAWIT--IDNNLFLWNYESDNELA-------------------EYDGLSHTILKVG 126 (1311)
T ss_pred CHHHHHHhcCcceeeeeccchhhcceEEE--eCCeEEEEEcCCCCccc-------------------cccchhhhheeee
Confidence 44455555566666666666654443443 48899999999855433 2334444555554
Q ss_pred E--------cCCCCEEEEEeCCCeEEEEEecCCcccee------eeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEE
Q 001184 417 W--------SPDGNFIGVAFTKHLIHLYTYQGSNDLCQ------SLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRV 482 (1130)
Q Consensus 417 ~--------spdg~~las~~~d~~i~vwd~~~~~~~~~------~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~i 482 (1130)
. -|.=+++.+...--.|.++-+.-.+.... ..++....-.|+++....+|+ .+++| .|| .+
T Consensus 127 LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR--IF~~G-~dg--~l 201 (1311)
T KOG1900|consen 127 LVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR--IFFAG-RDG--NL 201 (1311)
T ss_pred eecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc--EEEee-cCC--CE
Confidence 3 33444555555555677776543221111 112223355789999888888 55554 555 44
Q ss_pred Ee-----cCC---C-e----------------eeEec-CCCcCEEEEeecccCCccEEEEEecCCcEEEEEccC
Q 001184 483 WD-----LSG---R-K----------------LFQFE-GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDN 530 (1130)
Q Consensus 483 wd-----~~~---~-~----------------~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~ 530 (1130)
|. .+| + + +..+. .+..+|..+.+..+ ..++++-+..|+|.+||+..
T Consensus 202 yEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S--R~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 202 YELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS--RNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred EEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc--cceeeeeccCceEEEEEccC
Confidence 44 111 1 1 11223 56779999988543 36899999999999999875
No 459
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=90.06 E-value=4.8 Score=44.50 Aligned_cols=145 Identities=12% Similarity=0.066 Sum_probs=89.9
Q ss_pred CCcEEE-EEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCC--------CeEEEEeCCCcEEEEECCC-Cccccee
Q 001184 886 DNNIIA-IGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNL--------NILVSSGSDAQLIFWNTDT-WEKRKSI 955 (1130)
Q Consensus 886 ~~~~la-sg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg--------~~L~s~s~Dg~i~vwd~~~-~~~~~~~ 955 (1130)
+..+|. .|.....++-.|++.|+.+..+..|..- -+.|.|+. +.|+-.|.. .|.-.|..- +.+ ..
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~-svFrIDPR~~gNK--i~ 552 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDY-SVFRIDPRARGNK--IK 552 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeeccc-ceEEecccccCCc--ee
Confidence 444444 4555667888899999999999988775 46788753 345544443 333334322 111 11
Q ss_pred eEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEE
Q 001184 956 AIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGV 1035 (1130)
Q Consensus 956 ~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~v 1035 (1130)
......-.......+..-...|-..+++..|.|++||--.-.....+++. +..|..+..+.+|+++++.+ ..++.+
T Consensus 553 v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~l---G~aIk~idvta~Gk~ilaTC-k~yllL 628 (776)
T COG5167 553 VVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGL---GDAIKHIDVTANGKHILATC-KNYLLL 628 (776)
T ss_pred eeeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCccc---ccceeeeEeecCCcEEEEee-cceEEE
Confidence 11111111223444555555665556688999999997644443334333 67999999999999998888 557777
Q ss_pred EeCC
Q 001184 1036 FDAD 1039 (1130)
Q Consensus 1036 wd~~ 1039 (1130)
-|+.
T Consensus 629 ~d~~ 632 (776)
T COG5167 629 TDVP 632 (776)
T ss_pred Eecc
Confidence 7765
No 460
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=89.97 E-value=8.7 Score=43.15 Aligned_cols=102 Identities=15% Similarity=0.134 Sum_probs=52.8
Q ss_pred CCEEEEEEecCCCeEEEEEe-----------CcC-eEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEE
Q 001184 348 SSVVSMDFHPFHHTLLVVGC-----------GDG-EITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRV 415 (1130)
Q Consensus 348 ~~V~~v~fspdg~~llasg~-----------~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 415 (1130)
.....++|.++|+ |+++-. ..+ .|.+++-.++.-... ...++...-.....+
T Consensus 14 ~~P~~ia~d~~G~-l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d---------------~~~vfa~~l~~p~Gi 77 (367)
T TIGR02604 14 RNPIAVCFDERGR-LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYD---------------KSNVFAEELSMVTGL 77 (367)
T ss_pred CCCceeeECCCCC-EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcc---------------eeEEeecCCCCccce
Confidence 4678899999998 455432 123 676776443211110 001222223356889
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEecCCc----cceee-eeeec----CCCCeeEEEEecCCC
Q 001184 416 AWSPDGNFIGVAFTKHLIHLYTYQGSN----DLCQS-LEIDA----HVGGVNDLAFSYPNK 467 (1130)
Q Consensus 416 ~~spdg~~las~~~d~~i~vwd~~~~~----~~~~~-~~~~~----h~~~V~~i~~s~d~~ 467 (1130)
++.++| +++ +......++.|..... ..... ..+.. +......++|.|||.
T Consensus 78 ~~~~~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~ 136 (367)
T TIGR02604 78 AVAVGG-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW 136 (367)
T ss_pred eEecCC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC
Confidence 999999 444 4444433344543211 11111 11222 234578899999997
No 461
>PRK13684 Ycf48-like protein; Provisional
Probab=89.92 E-value=35 Score=37.65 Aligned_cols=152 Identities=9% Similarity=0.024 Sum_probs=81.2
Q ss_pred CcCEEEEeecccCCccEEEEEecCCcEEEEEccCCccee-e-ecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeC
Q 001184 497 EAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV-D-YDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNE 574 (1130)
Q Consensus 497 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~-~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1130)
...+..+.+.+ ++.++ ..+..|.+.. ..+...... . .......++++.+.++++.++++. .|.+.+-..
T Consensus 172 ~g~~~~i~~~~--~g~~v-~~g~~G~i~~-s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-----~G~~~~~s~ 242 (334)
T PRK13684 172 AGVVRNLRRSP--DGKYV-AVSSRGNFYS-TWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-----GGQIRFNDP 242 (334)
T ss_pred cceEEEEEECC--CCeEE-EEeCCceEEE-EcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEec-----CCEEEEccC
Confidence 45677777654 44444 4455565432 112222211 1 123345788999999998877764 455543233
Q ss_pred CCCceeEEEecc---cCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEec-cCCCCCcceEEEcCCCCEEEEE
Q 001184 575 SEGALKRTYIGF---RKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEA-EGGLPSLPRLRFNKEGNLLVVT 650 (1130)
Q Consensus 575 ~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~~~i~~v~~s~~~~~l~~~ 650 (1130)
..|..-...... ....+..+.+.+++. ++.++.+|.+. ...+.++.-..... ..-....+.+.|..+++.++ .
T Consensus 243 d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~-~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 319 (334)
T PRK13684 243 DDLESWSKPIIPEITNGYGYLDLAYRTPGE-IWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-L 319 (334)
T ss_pred CCCCccccccCCccccccceeeEEEcCCCC-EEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-E
Confidence 344332222111 112466788888766 45555667665 44555555444432 11112467777777666655 5
Q ss_pred eCCCcEEEEE
Q 001184 651 TADQGIKILA 660 (1130)
Q Consensus 651 ~~dg~i~iw~ 660 (1130)
+..|.|.-|+
T Consensus 320 G~~G~il~~~ 329 (334)
T PRK13684 320 GQRGVLLRYV 329 (334)
T ss_pred CCCceEEEec
Confidence 5677777665
No 462
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=89.91 E-value=1.2 Score=30.77 Aligned_cols=31 Identities=10% Similarity=0.165 Sum_probs=23.6
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCc--CeEEEE
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGD--GEITLW 375 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~d--g~i~iw 375 (1130)
.....-.+.+|||||++++.++..+ |.-.||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3556788999999999988888877 777766
No 463
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=89.69 E-value=1.3 Score=30.90 Aligned_cols=32 Identities=19% Similarity=0.341 Sum_probs=26.7
Q ss_pred ccEEEEEEcCC-C--CEEEEEeCCCeEEEEEecCC
Q 001184 410 ISVSRVAWSPD-G--NFIGVAFTKHLIHLYTYQGS 441 (1130)
Q Consensus 410 ~~V~~v~~spd-g--~~las~~~d~~i~vwd~~~~ 441 (1130)
++|.++.|||+ + .+||.+-..+.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 46899999985 4 58888888899999999863
No 464
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=89.50 E-value=4.3 Score=48.20 Aligned_cols=174 Identities=12% Similarity=0.147 Sum_probs=94.1
Q ss_pred CCEEEEEeCCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEE
Q 001184 845 DSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLA 924 (1130)
Q Consensus 845 g~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~ 924 (1130)
+.+++++..+.|.||+......... ..++..+...| .. +...|+.+..|- ..|+ |+.|.
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p~----~~p~~~~~t~p---~~--~~~~D~~~s~~p----------~PHt--IN~i~ 107 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLPS----RKPCLRFDTKP---EF--TSTPDRLISTWP----------FPHT--INFIK 107 (717)
T ss_pred CCEEEEEECCEEEEEecCCcccccc----cccccccccCc---cc--cccccccccCCC----------CCce--eeEEE
Confidence 7888888999999999865332110 11112222222 11 122344333332 1121 33332
Q ss_pred Ec--cCCCeEEEEeCCCcEEEEECCCCc-----c---cce---e--eEeccCCCCCCCeEEEEEc--CCCcEEEEEcC-C
Q 001184 925 FS--TNLNILVSSGSDAQLIFWNTDTWE-----K---RKS---I--AIQLPAGKLPVGETRVQFH--SDQVRLLVNHE-T 986 (1130)
Q Consensus 925 ~s--~dg~~L~s~s~Dg~i~vwd~~~~~-----~---~~~---~--~~~~~~~~~~~~v~~~~~s--~d~~~l~~~~d-~ 986 (1130)
.. -+...|+.+..||.|.+|.++.-. . ... . .........+..+..++++ ...+++|+|++ .
T Consensus 108 v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~ 187 (717)
T PF08728_consen 108 VGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQ 187 (717)
T ss_pred ecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCc
Confidence 22 234578888888999999764310 0 000 0 0000111223577888998 88889998754 4
Q ss_pred cEEEEECCCceeeeeeecCCCCCCCeEEEEECCCC---C---EEEEEeCCCcEEEEeCC
Q 001184 987 QLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNS---Q---LIYATFTDGSIGVFDAD 1039 (1130)
Q Consensus 987 ~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg---~---~l~t~~~Dg~i~vwd~~ 1039 (1130)
.|.||-...............+...|-+|+|-++. . +|++++-.|.+.+|++.
T Consensus 188 ~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 188 EVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred eEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 56666544321111111112246789999997743 2 78888889999998873
No 465
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=89.31 E-value=14 Score=41.20 Aligned_cols=151 Identities=11% Similarity=0.117 Sum_probs=89.9
Q ss_pred EEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEeecccC------CccEEEEEecCCcEEEEEccCC
Q 001184 459 DLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKE------NIHFIFSTAVDGKIKAWLYDNV 531 (1130)
Q Consensus 459 ~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~------~~~~l~s~s~dg~i~vwd~~~~ 531 (1130)
-+-...+.+.+++..|+....++-.| ..|+.+..+.-|...| +.|.|.. +.+.|+ |-.+..|.-.|.+..
T Consensus 471 K~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvv--Vqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~ 547 (776)
T COG5167 471 KIMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVV--VQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRAR 547 (776)
T ss_pred hceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcce--eecCCchhHHhcCccceEE-eecccceEEeccccc
Confidence 33444444444666777777888888 8899998888777664 3333321 223344 444555555566654
Q ss_pred cceeeecCCCccEEEEEEe----cCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEe
Q 001184 532 GSRVDYDAPGLWCTTMLYS----ADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAG 607 (1130)
Q Consensus 532 ~~~~~~~~~~~~v~~~~~s----~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 607 (1130)
.............+.-.|+ ....++++++. .|-|++||.-.-+....+++.. ..|..+..+.+|+++++.+
T Consensus 548 gNKi~v~esKdY~tKn~Fss~~tTesGyIa~as~----kGDirLyDRig~rAKtalP~lG-~aIk~idvta~Gk~ilaTC 622 (776)
T COG5167 548 GNKIKVVESKDYKTKNKFSSGMTTESGYIAAASR----KGDIRLYDRIGKRAKTALPGLG-DAIKHIDVTANGKHILATC 622 (776)
T ss_pred CCceeeeeehhccccccccccccccCceEEEecC----CCceeeehhhcchhhhcCcccc-cceeeeEeecCCcEEEEee
Confidence 4333222222222222232 24458888876 8889999965444444445433 3788889999999988877
Q ss_pred CCCcEEEEeCC
Q 001184 608 EDNQIKFWDMD 618 (1130)
Q Consensus 608 ~dg~i~vwd~~ 618 (1130)
. ..+.+-|+.
T Consensus 623 k-~yllL~d~~ 632 (776)
T COG5167 623 K-NYLLLTDVP 632 (776)
T ss_pred c-ceEEEEecc
Confidence 6 456666653
No 466
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=89.17 E-value=1.4 Score=47.68 Aligned_cols=159 Identities=13% Similarity=0.053 Sum_probs=99.2
Q ss_pred CCCceeEEEEecCCCEEEEEeCCeEEEEECCCceeEEE--EeCCCC----CeE-EEEEeCCCCcEEEEEeCCCcEEEE-E
Q 001184 832 AEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTT--FMSPPP----AST-FLAFHPQDNNIIAIGMEDSTIQIY-N 903 (1130)
Q Consensus 832 ~~~~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~--~~~~~~----~i~-~l~~sp~~~~~lasg~~dg~v~iw-d 903 (1130)
.-..+..+-..|||+.+..-+..++.++++.+...... .....+ .|+ ++..-. ++.-+.+++.||.|.-| |
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred CccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeeee
Confidence 45677888999999999988888899998876433221 111111 122 222233 66777789999998776 5
Q ss_pred eecC-e----EEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCc
Q 001184 904 VRVD-E----VKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQV 978 (1130)
Q Consensus 904 ~~~~-~----~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~ 978 (1130)
+..+ . .++.++-...++..+.--.+.+-+++-+..|++.++.-...+..... ........+++||.+.
T Consensus 298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~-------~~~~~~~~~~~Sp~~~ 370 (733)
T COG4590 298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFE-------RAYQAPQLVAMSPNQA 370 (733)
T ss_pred eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehh-------hhhcCcceeeeCcccc
Confidence 4432 2 12223322334444443344566778888888887765542221111 0113566789999999
Q ss_pred EEEEEcCCcEEEEECCCcee
Q 001184 979 RLLVNHETQLAIYDGSKMEC 998 (1130)
Q Consensus 979 ~l~~~~d~~i~v~d~~~~~~ 998 (1130)
+|++-+.+.++++.+++...
T Consensus 371 ~Ll~e~~gki~~~~l~Nr~P 390 (733)
T COG4590 371 YLLSEDQGKIRLAQLENRNP 390 (733)
T ss_pred hheeecCCceEEEEecCCCC
Confidence 99999999999998876443
No 467
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.12 E-value=5.3 Score=48.83 Aligned_cols=145 Identities=9% Similarity=0.103 Sum_probs=86.7
Q ss_pred CCeeEEEEccCCCeEEE--EeCCCcEEEEECCCCcccce---eeEec--cCCCCCCCeEEEEEcCCCc--EEEEEcCCcE
Q 001184 918 KHITGLAFSTNLNILVS--SGSDAQLIFWNTDTWEKRKS---IAIQL--PAGKLPVGETRVQFHSDQV--RLLVNHETQL 988 (1130)
Q Consensus 918 ~~V~~l~~s~dg~~L~s--~s~Dg~i~vwd~~~~~~~~~---~~~~~--~~~~~~~~v~~~~~s~d~~--~l~~~~d~~i 988 (1130)
-+|..+...+|+...++ .+.+-.|.+||+........ .++.. ..........++.|.|.-- .++...|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 35666777778765444 33445799999987443221 11110 1111224556677776433 3334678888
Q ss_pred EEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEE
Q 001184 989 AIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVV 1068 (1130)
Q Consensus 989 ~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1068 (1130)
++..+........-... ...+++++|+|.|+.++.|-..|++.-|... ++....+...-. -....++++
T Consensus 181 ~V~~~~~~~~~v~s~p~---t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~-------~e~yrvl~v 249 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPV---TNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPV-------EENYRVLSV 249 (1405)
T ss_pred hhhhhhhhhhhhcccCc---ccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCc-------CCCcceeEE
Confidence 88877643332221111 4678999999999999999999999988754 443333332211 124668888
Q ss_pred EEcCC
Q 001184 1069 TSHPQ 1073 (1130)
Q Consensus 1069 ~~~~~ 1073 (1130)
+|...
T Consensus 250 ~Wl~t 254 (1405)
T KOG3630|consen 250 TWLST 254 (1405)
T ss_pred EEecc
Confidence 99875
No 468
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=89.11 E-value=40 Score=37.24 Aligned_cols=190 Identities=12% Similarity=0.195 Sum_probs=102.6
Q ss_pred cCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeC---CCCcE--EEEEe-CC---CcEEEEEeec--CeEE
Q 001184 843 KNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHP---QDNNI--IAIGM-ED---STIQIYNVRV--DEVK 910 (1130)
Q Consensus 843 ~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp---~~~~~--lasg~-~d---g~v~iwd~~~--~~~~ 910 (1130)
|...+|+... .+.+.+||+...+. ..+. .+....+..-- -+++. ||+++ .+ .+|++|.+.. +. +
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk~l-q~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L 141 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGKEL-QSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-L 141 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS-EE-EEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-E
T ss_pred cccceEEEEeCCCCEEEEcCCCcEE-Eeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-c
Confidence 4444555555 68899999976544 4443 23444444321 02222 34443 32 4699998873 43 3
Q ss_pred EEEec-------CCCCeeEEEE--cc-CCC-eEEEEeCCCcEEEEECCCCc---ccceeeEeccCCCCCCCeEEEEEcCC
Q 001184 911 TKLKG-------HQKHITGLAF--ST-NLN-ILVSSGSDAQLIFWNTDTWE---KRKSIAIQLPAGKLPVGETRVQFHSD 976 (1130)
Q Consensus 911 ~~l~~-------h~~~V~~l~~--s~-dg~-~L~s~s~Dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~v~~~~~s~d 976 (1130)
..+.. ....+..+|+ ++ +|. +++..+.+|.+..|.+.... ........+. ....+..++....
T Consensus 142 ~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~---~~sQ~EGCVVDDe 218 (381)
T PF02333_consen 142 TDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK---VGSQPEGCVVDDE 218 (381)
T ss_dssp EE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE----SS-EEEEEEETT
T ss_pred eEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec---CCCcceEEEEecc
Confidence 33321 1234667776 33 454 56677889999888886322 2222222222 2257888888888
Q ss_pred CcEEEEE-cCCcEEEEECCC-----ceeeeeeecCCCCCCCeEEEEEC--CCCC-EEEEEe-CCCcEEEEeCCC
Q 001184 977 QVRLLVN-HETQLAIYDGSK-----MECIRQWVPQDVLSSPISSAAYS--CNSQ-LIYATF-TDGSIGVFDADS 1040 (1130)
Q Consensus 977 ~~~l~~~-~d~~i~v~d~~~-----~~~~~~~~~~~~~~~~v~~v~~s--~dg~-~l~t~~-~Dg~i~vwd~~~ 1040 (1130)
..+|..+ .+..|.-|+.+- +..+.... .......|-.+++- .+|+ ||++++ .+++..||+.+.
T Consensus 219 ~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~-g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 219 TGRLYVGEEDVGIWRYDAEPEGGNDRTLVASAD-GDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp TTEEEEEETTTEEEEEESSCCC-S--EEEEEBS-SSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred cCCEEEecCccEEEEEecCCCCCCcceeeeccc-ccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence 8888876 466777787751 22332222 22335678888774 3544 777666 467899999875
No 469
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=88.94 E-value=36 Score=36.49 Aligned_cols=172 Identities=11% Similarity=0.066 Sum_probs=95.2
Q ss_pred eEEEEECCCceeEEEEeCC------CCCeEEEEEeCCCC----cEEEEEe-CCCcEEEEEeecCeEEEEEecC-------
Q 001184 855 KVSLFNMMNFKVMTTFMSP------PPASTFLAFHPQDN----NIIAIGM-EDSTIQIYNVRVDEVKTKLKGH------- 916 (1130)
Q Consensus 855 ~i~iwd~~~~~~~~~~~~~------~~~i~~l~~sp~~~----~~lasg~-~dg~v~iwd~~~~~~~~~l~~h------- 916 (1130)
+|.+||+.+.+.++++.-+ .+....+.+...++ .++..++ ..+-|.|||+.+++.-+.+..+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 6889999999998887633 34467777766222 3444443 3357999999988765544321
Q ss_pred ------------CCCeeEEEEcc---CCCeEEEEeCCCcEEEEECCCCccccee---------eEeccCCCCCCCeEEEE
Q 001184 917 ------------QKHITGLAFST---NLNILVSSGSDAQLIFWNTDTWEKRKSI---------AIQLPAGKLPVGETRVQ 972 (1130)
Q Consensus 917 ------------~~~V~~l~~s~---dg~~L~s~s~Dg~i~vwd~~~~~~~~~~---------~~~~~~~~~~~~v~~~~ 972 (1130)
.+.+.+++.+| ||++|.-....+ -.+|.+.+....... ..+.. +........++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~~~s~g~~ 192 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDL-GDKGSQSDGMA 192 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE---SECEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceec-cccCCCCceEE
Confidence 23366777765 667777665544 245554431111100 00000 11113456788
Q ss_pred EcCCCcEEEE-EcCCcEEEEECCCce---eeeeeecCCCCCCCeEEEEECC--CCCEEEEEe
Q 001184 973 FHSDQVRLLV-NHETQLAIYDGSKME---CIRQWVPQDVLSSPISSAAYSC--NSQLIYATF 1028 (1130)
Q Consensus 973 ~s~d~~~l~~-~~d~~i~v~d~~~~~---~~~~~~~~~~~~~~v~~v~~s~--dg~~l~t~~ 1028 (1130)
++++|.+..+ -..+.|..|+..+.- ....+......-..+.++.+.+ +|.+.+.+.
T Consensus 193 ~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 193 IDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp EETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred ECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEEC
Confidence 8898888877 468899999988611 1222222211134678899988 777666554
No 470
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=88.87 E-value=38 Score=36.68 Aligned_cols=209 Identities=11% Similarity=-0.015 Sum_probs=102.2
Q ss_pred CCCceeEEEEecCCCEEEEEeCCe--EEEEECCCcee---------------EEEEeCCCCCeEEEEEeCCCCcEEEEEe
Q 001184 832 AEDVVPCVALSKNDSYVMSAGGGK--VSLFNMMNFKV---------------MTTFMSPPPASTFLAFHPQDNNIIAIGM 894 (1130)
Q Consensus 832 ~~~~i~~l~~s~dg~~la~~~dg~--i~iwd~~~~~~---------------~~~~~~~~~~i~~l~~sp~~~~~lasg~ 894 (1130)
+...|+++.+.+..+.|++-+++. ++.+++..... ....-++.......+........++++.
T Consensus 41 ~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A 120 (302)
T smart00036 41 GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVA 120 (302)
T ss_pred CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEE
Confidence 567899999999999888887665 99999843331 0111133343444454442222333444
Q ss_pred CCCcEEEEEeecC--e--EEEEE---e-cCCCCeeEEEEccC--CCeEEEEeCCCcEEEEECCC--CcccceeeEeccCC
Q 001184 895 EDSTIQIYNVRVD--E--VKTKL---K-GHQKHITGLAFSTN--LNILVSSGSDAQLIFWNTDT--WEKRKSIAIQLPAG 962 (1130)
Q Consensus 895 ~dg~v~iwd~~~~--~--~~~~l---~-~h~~~V~~l~~s~d--g~~L~s~s~Dg~i~vwd~~~--~~~~~~~~~~~~~~ 962 (1130)
...+|.++..... + ....+ . .-..++..+..+++ ...+..|+..+...++++.. ....... ......
T Consensus 121 ~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~s-l~~~~~ 199 (302)
T smart00036 121 LQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLS-LPFLSE 199 (302)
T ss_pred cCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeeccccccccc-cccccc
Confidence 5566777654322 1 11110 0 01123444443433 44666666542345555533 1100000 000000
Q ss_pred CCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCceeeee-eecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCc
Q 001184 963 KLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQ-WVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSL 1041 (1130)
Q Consensus 963 ~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~ 1041 (1130)
.......++..-+++.+|++-++ ....-|.......+. .... .....++++. ..+|++-. +..|.|+++.++
T Consensus 200 ~~~~~p~~i~~l~~~e~Llc~~~-~~v~Vn~~G~~~~r~~~l~w---~~~p~~~~~~--~pyll~~~-~~~ievr~l~~~ 272 (302)
T smart00036 200 ETSLKPISVVQVPRDEFLLCYDE-FGVFVNLYGKRRSRNPILHW---EFMPESFAYH--SPYLLAFH-DNGIEIRSIKTG 272 (302)
T ss_pred ccccCceEEEEECCCeEEEEECc-EEEEEeCCCCccccceEEEc---CCcccEEEEE--CCEEEEEc-CCcEEEEECCCC
Confidence 00002333444445666555433 333444432111111 1111 3455677776 45676665 556999999999
Q ss_pred ccccccC
Q 001184 1042 RLRCRIA 1048 (1130)
Q Consensus 1042 ~~~~~~~ 1048 (1130)
++...+.
T Consensus 273 ~l~q~i~ 279 (302)
T smart00036 273 ELLQELA 279 (302)
T ss_pred ceEEEEe
Confidence 8876664
No 471
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=88.69 E-value=39 Score=43.96 Aligned_cols=69 Identities=14% Similarity=0.130 Sum_probs=50.8
Q ss_pred CCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEE
Q 001184 917 QKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYD 992 (1130)
Q Consensus 917 ~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d 992 (1130)
...|+++|.-.+ +.+++.+..|.+.... +.+. +..+......+.|..++...+..+.+...+|.++-.+
T Consensus 702 ~~~i~a~Avv~~-~~fvald~qg~lt~h~-k~g~-----p~~l~~~gl~G~ik~l~lD~~~nL~Alt~~G~Lf~~~ 770 (1774)
T PF11725_consen 702 DRVITAFAVVND-NKFVALDDQGDLTAHQ-KPGR-----PVPLSRPGLSGEIKDLALDEKQNLYALTSTGELFRLP 770 (1774)
T ss_pred cCcceeEEEEcC-CceEEeccCCcccccc-CCCC-----CccCCCCCCCcchhheeeccccceeEecCCCceeecC
Confidence 455788888744 6677788889898887 5543 3444444556889999999999888888888877644
No 472
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=88.61 E-value=21 Score=35.59 Aligned_cols=173 Identities=10% Similarity=0.072 Sum_probs=89.5
Q ss_pred cEEEEEeCCCcEEEEEee--cCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCC------cEEEE---ECCCCcccceee
Q 001184 888 NIIAIGMEDSTIQIYNVR--VDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDA------QLIFW---NTDTWEKRKSIA 956 (1130)
Q Consensus 888 ~~lasg~~dg~v~iwd~~--~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg------~i~vw---d~~~~~~~~~~~ 956 (1130)
..|..+...+.|.+|++. ..+.+.++..- +.|..+.++..|++|++--.+. .+++| +....+.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~----- 102 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEEN----- 102 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccC-----
Confidence 444444667789999998 34566777644 8899999999999999975532 34443 2221000
Q ss_pred EeccCCCCCCCeE-EEEEcCCCcEEEEEcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEE
Q 001184 957 IQLPAGKLPVGET-RVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGV 1035 (1130)
Q Consensus 957 ~~~~~~~~~~~v~-~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~v 1035 (1130)
.++. .++ |..+-.+..+.. +..+..++.+. +.++.+++-.|-..-|+.|+ ++.+.+
T Consensus 103 ---------~~v~vRia----G~~v~~~~~~~~-------~~qleiiElPl--~~~p~ciaCC~~tG~LlVg~-~~~l~l 159 (215)
T PF14761_consen 103 ---------SPVRVRIA----GHRVTPSFNESS-------KDQLEIIELPL--SEPPLCIACCPVTGNLLVGC-GNKLVL 159 (215)
T ss_pred ---------CcEEEEEc----ccccccCCCCcc-------ccceEEEEecC--CCCCCEEEecCCCCCEEEEc-CCEEEE
Confidence 1111 111 100000000000 11112222221 45778888888655666676 678999
Q ss_pred EeCCCccc-ccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 001184 1036 FDADSLRL-RCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPS 1093 (1130)
Q Consensus 1036 wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~ 1093 (1130)
|.+..... ...+....+......|.-...+..+++. +++++..+. -.+++.++.
T Consensus 160 f~l~~~~~~~~~~~~lDFe~~l~~~~~~~~p~~v~ic---~~yiA~~s~-~ev~Vlkl~ 214 (215)
T PF14761_consen 160 FTLKYQTIQSEKFSFLDFERSLIDHIDNFKPTQVAIC---EGYIAVMSD-LEVLVLKLE 214 (215)
T ss_pred EEEEEEEEecccccEEechhhhhheecCceEEEEEEE---eeEEEEecC-CEEEEEEEe
Confidence 97765443 2111111111111122233445555553 357777774 447777653
No 473
>PLN02153 epithiospecifier protein
Probab=88.51 E-value=29 Score=38.57 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=14.8
Q ss_pred CCCeEEEEeCC-----CcEEEEECCCCc
Q 001184 928 NLNILVSSGSD-----AQLIFWNTDTWE 950 (1130)
Q Consensus 928 dg~~L~s~s~D-----g~i~vwd~~~~~ 950 (1130)
+++.++.|+.+ ..+.+||..+.+
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 112 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNE 112 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCE
Confidence 45666677653 247788887744
No 474
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=87.87 E-value=42 Score=35.98 Aligned_cols=190 Identities=12% Similarity=0.144 Sum_probs=99.8
Q ss_pred EeeecCCCCCCCCcc--cccccccccccCCCCcceeccCCC----CCCCceeEEEEecCC-----CEEEEEe--CCeEEE
Q 001184 792 KLWKWNRTEQNPSGK--ATAAVAPQHWQPSNGLLMTNDVPE----NAEDVVPCVALSKND-----SYVMSAG--GGKVSL 858 (1130)
Q Consensus 792 ~iw~~~~~~~~~~~~--~~~~~~~~~w~~~~~~~~~~~~~~----~~~~~i~~l~~s~dg-----~~la~~~--dg~i~i 858 (1130)
++|-++.+.....+. ..+...+..||+.+++++...... .....+..+++.... .++..+. .+.|.|
T Consensus 13 rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV 92 (287)
T PF03022_consen 13 RLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIV 92 (287)
T ss_dssp EEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEE
T ss_pred CEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEE
Confidence 456666554332221 244456677899988865443222 235567788887632 3444444 467999
Q ss_pred EECCCceeEEEEeCCC-------------------CCeEEEEEeCC--CCcEEEEEeCCCcEEEEEeecC----------
Q 001184 859 FNMMNFKVMTTFMSPP-------------------PASTFLAFHPQ--DNNIIAIGMEDSTIQIYNVRVD---------- 907 (1130)
Q Consensus 859 wd~~~~~~~~~~~~~~-------------------~~i~~l~~sp~--~~~~lasg~~dg~v~iwd~~~~---------- 907 (1130)
+|+.+++..+.+..+. ..+..++.+|- +++.|....-.+ -++|.+.+.
T Consensus 93 ~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~ 171 (287)
T PF03022_consen 93 YDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDA 171 (287)
T ss_dssp EETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HH
T ss_pred EEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCcccccc
Confidence 9999988776665322 12444455441 224444443322 234444321
Q ss_pred ----eEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcC--CCcEEE
Q 001184 908 ----EVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHS--DQVRLL 981 (1130)
Q Consensus 908 ----~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--d~~~l~ 981 (1130)
+.+..+-.......+++++++|..+++--..+.|..|+..+.-.......-......-..+..+.+.+ +|.+.+
T Consensus 172 ~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v 251 (287)
T PF03022_consen 172 QALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWV 251 (287)
T ss_dssp H-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEE
T ss_pred ccccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEE
Confidence 01122211123567789999999999999999999999887333222222222222125667788888 666554
Q ss_pred E
Q 001184 982 V 982 (1130)
Q Consensus 982 ~ 982 (1130)
.
T Consensus 252 ~ 252 (287)
T PF03022_consen 252 L 252 (287)
T ss_dssp E
T ss_pred E
Confidence 4
No 475
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=87.53 E-value=41 Score=35.43 Aligned_cols=203 Identities=15% Similarity=0.139 Sum_probs=117.2
Q ss_pred CeeEEEEecCCCceEEEEEcCCCcEEEEecC-----CC---eeeEecC-----CCcCEEEEeecccCC----------cc
Q 001184 456 GVNDLAFSYPNKQLCIVTCGDDKLIRVWDLS-----GR---KLFQFEG-----HEAPVYSVCPHQKEN----------IH 512 (1130)
Q Consensus 456 ~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~-----~~---~~~~~~~-----h~~~v~~~~~~~~~~----------~~ 512 (1130)
.-+.|+|+|.+. +-++...-+...+||.. +. .+.++.. .....+.+.|+...+ ..
T Consensus 24 N~WGia~~p~~~--~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 24 NAWGLSYRPGGP--FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred ccceeEecCCCC--EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 358899999887 67777778899999943 21 2333331 123456666653221 12
Q ss_pred EEEEEecCCcEEEEEccCCcc-----eeeecCC--CccEEEEEEec--CCCeEEEeeecCCCCcEEEEeeCCCCceeE--
Q 001184 513 FIFSTAVDGKIKAWLYDNVGS-----RVDYDAP--GLWCTTMLYSA--DGSRLFSCGTSKEGDSHLVEWNESEGALKR-- 581 (1130)
Q Consensus 513 ~l~s~s~dg~i~vwd~~~~~~-----~~~~~~~--~~~v~~~~~s~--~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~-- 581 (1130)
.++.+++||+|.-|....... ...+... ..-...+++.. .+.+|..+-. ..++|.++|-.-.+...
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF---~~g~IDVFd~~f~~~~~~g 178 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANF---RQGRIDVFKGSFRPPPLPG 178 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEecc---CCCceEEecCccccccCCC
Confidence 467889999999997533222 2223221 22344555553 3566666543 27889999854322210
Q ss_pred EEecc--cC--ceeEE-----------EEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcC----
Q 001184 582 TYIGF--RK--KSAGV-----------VQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK---- 642 (1130)
Q Consensus 582 ~~~~~--~~--~~v~~-----------~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~---- 642 (1130)
.+... .. .+... ..-.++...=+.|..-|.|-+||+ .|+.++.+...+....-..++..|
T Consensus 179 ~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG 257 (336)
T TIGR03118 179 SFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFG 257 (336)
T ss_pred CccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhC
Confidence 01100 00 00111 111122222223334578999997 577888776665555667777755
Q ss_pred --CCCEEEEEeCCCcEEEEEcCCC
Q 001184 643 --EGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 643 --~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
.+.+|+---.||+|..+|..++
T Consensus 258 ~~sg~lLVGNFGDG~InaFD~~sG 281 (336)
T TIGR03118 258 SLSGALLVGNFGDGTINAYDPQSG 281 (336)
T ss_pred CCCCCeEEeecCCceeEEecCCCC
Confidence 4677777778999999998877
No 476
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=87.06 E-value=14 Score=40.43 Aligned_cols=161 Identities=16% Similarity=0.133 Sum_probs=91.9
Q ss_pred CccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCcee-EEEEecC
Q 001184 766 SASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVP-CVALSKN 844 (1130)
Q Consensus 766 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~-~l~~s~d 844 (1130)
....+..+...|||+.+++.+. ..+.++++........ + . .+-..| .....|+ .+..-..
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~r-k-l-------~~dspg---------~~~~~Vte~l~lL~G 279 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIR-K-L-------VDDSPG---------DSRHQVTEQLYLLSG 279 (733)
T ss_pred CccchHhhEECCCCCEEEEecC-CeEEEEeecccccchh-h-h-------hhcCCC---------chHHHHHHHHHHHhC
Confidence 4567788999999999988777 6777887765332211 0 0 010000 0011111 1112234
Q ss_pred CCEEEEEe-CCeEEEE-ECCCc-----eeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCC
Q 001184 845 DSYVMSAG-GGKVSLF-NMMNF-----KVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQ 917 (1130)
Q Consensus 845 g~~la~~~-dg~i~iw-d~~~~-----~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~ 917 (1130)
|.-+.++. ||.|.-| |.... ..++.++-...++..+.-.. +.+-+++-+.+|++.++.....+.+..-. --
T Consensus 280 g~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~-~rkgF~~l~~~G~L~~f~st~~~~lL~~~-~~ 357 (733)
T COG4590 280 GFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPET-NRKGFYSLYRNGTLQSFYSTSEKLLLFER-AY 357 (733)
T ss_pred ceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeecccc-ccceEEEEcCCCceeeeecccCcceehhh-hh
Confidence 44444444 7776655 44322 22333333334454444433 56778888899999888766554432222 22
Q ss_pred CCeeEEEEccCCCeEEEEeCCCcEEEEECCC
Q 001184 918 KHITGLAFSTNLNILVSSGSDAQLIFWNTDT 948 (1130)
Q Consensus 918 ~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~ 948 (1130)
..+.-+++||.+.+|++-. .|.++++.+++
T Consensus 358 ~~~~~~~~Sp~~~~Ll~e~-~gki~~~~l~N 387 (733)
T COG4590 358 QAPQLVAMSPNQAYLLSED-QGKIRLAQLEN 387 (733)
T ss_pred cCcceeeeCcccchheeec-CCceEEEEecC
Confidence 3566789999999998765 45688888876
No 477
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.27 E-value=21 Score=39.25 Aligned_cols=130 Identities=9% Similarity=0.006 Sum_probs=77.0
Q ss_pred CCeEEEEEcCCCcEEEEE-cCCcEEEEECCCceeeeee-ecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCccc
Q 001184 966 VGETRVQFHSDQVRLLVN-HETQLAIYDGSKMECIRQW-VPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRL 1043 (1130)
Q Consensus 966 ~~v~~~~~s~d~~~l~~~-~d~~i~v~d~~~~~~~~~~-~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~ 1043 (1130)
+++.++.||+|.+.+|+. .+.+|.+++....+..... ..+...+..|...+|+.+. -+|.-+.. -+-+|-+..-+.
T Consensus 67 G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~-e~A~i~~~-G~e~y~v~pekr 144 (657)
T KOG2377|consen 67 GEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSST-EIAFITDQ-GIEFYQVLPEKR 144 (657)
T ss_pred CceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCe-eEEEEecC-CeEEEEEchhhh
Confidence 689999999999999994 6889999887433322221 1122225569999999774 44544433 366665543332
Q ss_pred ccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEe-CCCcEEEEeCCCCccCCcccccCCCCCC
Q 001184 1044 RCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGL-TDGSVKVIEPSETERKWGVAVPVDNGTD 1110 (1130)
Q Consensus 1044 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~Dg~v~vW~~~~~~~~w~~~~p~~~~~~ 1110 (1130)
-.++- .++.+.+.-.+|.++..-.|++.+ ..+++.-+.++++.. +..|.-.-++
T Consensus 145 slRlV----------ks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~v---~kLPkfe~~~ 199 (657)
T KOG2377|consen 145 SLRLV----------KSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGTM---SKLPKFEIEL 199 (657)
T ss_pred hhhhh----------hhcccCccEEEEccccceEeeeccccccccccEEEeecee---eeccceeecC
Confidence 22221 234455666788886444444444 456666666666553 3445444444
No 478
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=86.25 E-value=38 Score=40.68 Aligned_cols=109 Identities=11% Similarity=0.227 Sum_probs=70.6
Q ss_pred eeEEEEe--cCCCEEEEEe-CCeEEEEECCC-------c----e---------eEEEEeCCCCCeEEEEEe--CCCCcEE
Q 001184 836 VPCVALS--KNDSYVMSAG-GGKVSLFNMMN-------F----K---------VMTTFMSPPPASTFLAFH--PQDNNII 890 (1130)
Q Consensus 836 i~~l~~s--~dg~~la~~~-dg~i~iwd~~~-------~----~---------~~~~~~~~~~~i~~l~~s--p~~~~~l 890 (1130)
|..|.+. -+...|+.+. ||.|.+|.+++ . + +...+. -...+..++++ . ..++|
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~-~~rlI 180 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYK-KSRLI 180 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecC-cceEE
Confidence 4444443 2344555555 79999997632 1 0 011111 23467889998 6 78899
Q ss_pred EEEeCCCcEEEEEeecC--eEE-EEEecCCCCeeEEEEccCC---C---eEEEEeCCCcEEEEEC
Q 001184 891 AIGMEDSTIQIYNVRVD--EVK-TKLKGHQKHITGLAFSTNL---N---ILVSSGSDAQLIFWNT 946 (1130)
Q Consensus 891 asg~~dg~v~iwd~~~~--~~~-~~l~~h~~~V~~l~~s~dg---~---~L~s~s~Dg~i~vwd~ 946 (1130)
|+++....|.||-.... +.. ..-..|...|-+|+|-++. . +|++++-.|.+.+|++
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 99999998988876542 111 1111256679999997653 2 7888999999999888
No 479
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=85.88 E-value=3.9 Score=41.70 Aligned_cols=76 Identities=17% Similarity=0.119 Sum_probs=53.9
Q ss_pred EccCCCeEEEEeCCCcEEEEECCCCccccee-e-EeccCC------CCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCc
Q 001184 925 FSTNLNILVSSGSDAQLIFWNTDTWEKRKSI-A-IQLPAG------KLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKM 996 (1130)
Q Consensus 925 ~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~-~-~~~~~~------~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~ 996 (1130)
+..++.+|++.+.+|.+++||+.+.+..... . ...... .....|..+.++.+|.-+++-.++..+.|+..-+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~ 97 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG 97 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence 4457889999999999999999997654332 0 011110 2336788889999999888877788899987754
Q ss_pred eeee
Q 001184 997 ECIR 1000 (1130)
Q Consensus 997 ~~~~ 1000 (1130)
.-+.
T Consensus 98 ~W~~ 101 (219)
T PF07569_consen 98 CWIR 101 (219)
T ss_pred eeEE
Confidence 4433
No 480
>PLN02193 nitrile-specifier protein
Probab=85.56 E-value=72 Score=37.25 Aligned_cols=219 Identities=13% Similarity=0.065 Sum_probs=0.0
Q ss_pred CCcEEEEEeCC-------CcEEEEEeecCeEEEEEecCCCCe----eEEEEccCCCeEEEEeCC-----CcEEEEECCCC
Q 001184 886 DNNIIAIGMED-------STIQIYNVRVDEVKTKLKGHQKHI----TGLAFSTNLNILVSSGSD-----AQLIFWNTDTW 949 (1130)
Q Consensus 886 ~~~~lasg~~d-------g~v~iwd~~~~~~~~~l~~h~~~V----~~l~~s~dg~~L~s~s~D-----g~i~vwd~~~~ 949 (1130)
++.+++.|+.+ ..+.+||+.+.+-...-.....+- ..-+..-+++..+.++.+ ..+..+|+.+
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t- 253 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTT- 253 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCC-
Q ss_pred cccceeeEeccCC---CCCCCeEEEEEcCCCcEEEEEcCCc-----EEEEECCCceeeeeeecCCCCCCCeEEEEECCCC
Q 001184 950 EKRKSIAIQLPAG---KLPVGETRVQFHSDQVRLLVNHETQ-----LAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNS 1021 (1130)
Q Consensus 950 ~~~~~~~~~~~~~---~~~~~v~~~~~s~d~~~l~~~~d~~-----i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg 1021 (1130)
......... ..+....+++...+.-+++.+.++. +..||+.+.+-...-.............+..-++
T Consensus 254 ----~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~g 329 (470)
T PLN02193 254 ----NEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQG 329 (470)
T ss_pred ----CEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECC
Q ss_pred CEEEEEeCC----CcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCC------------
Q 001184 1022 QLIYATFTD----GSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDG------------ 1085 (1130)
Q Consensus 1022 ~~l~t~~~D----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg------------ 1085 (1130)
++++.++.+ ..+.+||..+.+....-...........|+.... ++.+++.|+.+.
T Consensus 330 kiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~---------~~~iyv~GG~~~~~~~~~~~~~~~ 400 (470)
T PLN02193 330 KVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAV---------GKHIVIFGGEIAMDPLAHVGPGQL 400 (470)
T ss_pred cEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEE---------CCEEEEECCccCCccccccCccce
Q ss_pred --cEEEEeCCCCccCCcccc--cCCCCCCCCccccCCCC
Q 001184 1086 --SVKVIEPSETERKWGVAV--PVDNGTDNCRTVTSSAT 1120 (1130)
Q Consensus 1086 --~v~vW~~~~~~~~w~~~~--p~~~~~~~~~~~~~~~~ 1120 (1130)
.+.++|+.+.+ |.... +.++-.+.+|.-++.++
T Consensus 401 ~ndv~~~D~~t~~--W~~~~~~~~~~~~P~~R~~~~~~~ 437 (470)
T PLN02193 401 TDGTFALDTETLQ--WERLDKFGEEEETPSSRGWTASTT 437 (470)
T ss_pred eccEEEEEcCcCE--EEEcccCCCCCCCCCCCcccccee
No 481
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=85.31 E-value=13 Score=43.27 Aligned_cols=133 Identities=11% Similarity=-0.002 Sum_probs=68.9
Q ss_pred EEEcCCCcEEEEEcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeC-------------CCcEEEEe
Q 001184 971 VQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFT-------------DGSIGVFD 1037 (1130)
Q Consensus 971 ~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~-------------Dg~i~vwd 1037 (1130)
+..-++|.+++... ..++.+|+. |+.+..+........-=..+...|+|.+|+.+.. .-.|..+|
T Consensus 153 ~~~l~nG~ll~~~~-~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd 230 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG-NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD 230 (477)
T ss_dssp EEE-TTS-EEEEEB-TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-
T ss_pred eeEcCCCCEEEecC-CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC
Confidence 55678888887655 778888875 5555554433100001135677899998888871 12356666
Q ss_pred CCCcccccccCCCccc-ccC---------------CCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCccCCcc
Q 001184 1038 ADSLRLRCRIAPSAYM-SQA---------------SPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETERKWGV 1101 (1130)
Q Consensus 1038 ~~~~~~~~~~~~~~~~-~~~---------------~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~~~~~~w~~ 1101 (1130)
.+|+.+..+.....+ +.. .....-...-++.+.+.++.+++|+=.-..|...|..+++.+|-+
T Consensus 231 -~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wil 309 (477)
T PF05935_consen 231 -PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWIL 309 (477)
T ss_dssp -TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEE
T ss_pred -CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEe
Confidence 777766554433322 110 012223456678888866555555544558889998999999988
Q ss_pred cccCC
Q 001184 1102 AVPVD 1106 (1130)
Q Consensus 1102 ~~p~~ 1106 (1130)
..|..
T Consensus 310 g~~~~ 314 (477)
T PF05935_consen 310 GPPGG 314 (477)
T ss_dssp S-STT
T ss_pred CCCCC
Confidence 87765
No 482
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.75 E-value=51 Score=40.69 Aligned_cols=249 Identities=12% Similarity=0.041 Sum_probs=117.3
Q ss_pred EEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe
Q 001184 773 LLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG 852 (1130)
Q Consensus 773 l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~ 852 (1130)
.++..-|..+.+|+.+|.+.+|.+........... .. + ....... -++.+|..+...+.-.++.+-+
T Consensus 20 ~~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~--~~-------~-~~~~~~~---~~kk~i~~l~~~~~~~~ll~l~ 86 (877)
T KOG2063|consen 20 LCVAAYGNHLYVGTRDGDLYLYSIYERGNPESVEL--VT-------E-TVKFEKE---FSKKPINKLLVCASLELLLILS 86 (877)
T ss_pred hHHHHhCCEEEEEcCCCcEEEEeccccccccchhh--hc-------c-hhHHhhh---hccchhHHHhhcchhcchheec
Confidence 44555688899999999999998766433211111 00 0 0001111 1356777777777777788888
Q ss_pred CCeEEEEECCCceeEEEEeCCCCCeEEEEEeC---CCC--cEEEEEe-CCCcE-EEEEeecCeEEEEEecCCCCeeEEEE
Q 001184 853 GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHP---QDN--NIIAIGM-EDSTI-QIYNVRVDEVKTKLKGHQKHITGLAF 925 (1130)
Q Consensus 853 dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp---~~~--~~lasg~-~dg~v-~iwd~~~~~~~~~l~~h~~~V~~l~~ 925 (1130)
|+.|.++++.+.+..... .+...+...+..- ..+ .+.+... ....+ ..|+-+.+..+..--+-.....+++|
T Consensus 87 dsqi~~~~l~~~~~~~~~-~~~Kg~~~f~~~~~~~s~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 165 (877)
T KOG2063|consen 87 DSQIAVHKLPELEPVPSG-TRLKGASLFTIDLRPISTGPSVYEICLSVRKRLIRFFWNGRDGIVLVKELGFPDVPKARAW 165 (877)
T ss_pred CCcceeeecCcccccccc-cccccceeeccccccccCCcceEEEEeeccceEEEEEecCCCceEEEEecccccchhhhcc
Confidence 888998888766552111 1111111111100 011 1122222 11111 22332222222221111222233333
Q ss_pred ccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCcee-eeeeec
Q 001184 926 STNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMEC-IRQWVP 1004 (1130)
Q Consensus 926 s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~-~~~~~~ 1004 (1130)
.|..+.++-.+....+|.-.++............ ...-..+.--.++..++.+.|+...+-|.. |.. .+.-..
T Consensus 166 --~~~~~c~~~~~~~~ii~~~~~~~~~~~~~s~~~~---~s~~P~I~~l~~~~~ll~~kd~~gv~vd~~-G~~~~~~~l~ 239 (877)
T KOG2063|consen 166 --CGHIVCLGLKKSYYIINNTSKGVGPNLFPSSMDN---ESRKPLIKSLSDQSELLLGKDNIGVVVDLN-GIIAQRGTLV 239 (877)
T ss_pred --cceeEEEeecceeEEEecCCCccccceeeecccc---ccCCCeEEEecCCceEEEccCceEEEEecC-CcccCCCceE
Confidence 3444444444344445554444222222222111 122234555566766777777776666644 322 111100
Q ss_pred CCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCccccccc
Q 001184 1005 QDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRI 1047 (1130)
Q Consensus 1005 ~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~ 1047 (1130)
. +....++. -+..|+++-+ ++.|.||+..+++++..+
T Consensus 240 w---s~~P~~v~--~~~PYlIa~~-~~~veI~s~~~~qlvQSI 276 (877)
T KOG2063|consen 240 W---SEVPLSVV--VESPYLIALL-DRSVEIRSKLDGQLVQSI 276 (877)
T ss_pred e---cccchhhc--ccCceEEEEc-cccEEEEeccCHHHhhcc
Confidence 0 11111221 2456777766 669999999999877766
No 483
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.49 E-value=17 Score=39.92 Aligned_cols=108 Identities=11% Similarity=0.094 Sum_probs=69.5
Q ss_pred cCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECC
Q 001184 915 GHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGS 994 (1130)
Q Consensus 915 ~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~ 994 (1130)
...++|.++.||+|.+.||+--.|.+|.+.+....+...........+ ...+....|+.. .-+|.-.+..+-+|-..
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k--~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~ 140 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTK--NANILGFCWTSS-TEIAFITDQGIEFYQVL 140 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccC--cceeEEEEEecC-eeEEEEecCCeEEEEEc
Confidence 355789999999999999999999999999985533222221111111 145778888877 44444455566666654
Q ss_pred C-ceeeeeeecCCCCCCCeEEEEECCCCCEEEEEe
Q 001184 995 K-MECIRQWVPQDVLSSPISSAAYSCNSQLIYATF 1028 (1130)
Q Consensus 995 ~-~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~ 1028 (1130)
. ...++.... ++..|.-..|.++.+.+..++
T Consensus 141 pekrslRlVks---~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 141 PEKRSLRLVKS---HNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred hhhhhhhhhhh---cccCccEEEEccccceEeeec
Confidence 3 222333333 377888899999888554444
No 484
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=84.38 E-value=26 Score=39.97 Aligned_cols=116 Identities=11% Similarity=0.112 Sum_probs=63.4
Q ss_pred EecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEe-ccCCCCCCCeEEEEEcCCC------cEEEEE--
Q 001184 913 LKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQ-LPAGKLPVGETRVQFHSDQ------VRLLVN-- 983 (1130)
Q Consensus 913 l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~d~------~~l~~~-- 983 (1130)
+...-..-+.|+|.|||++|++--..|.|++++..++.......+. ............|+++|+- .+|.++
T Consensus 25 va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt 104 (454)
T TIGR03606 25 LLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYT 104 (454)
T ss_pred EECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEe
Confidence 3334456789999999988777655799999986654321111111 1111123678899999884 244432
Q ss_pred c---------CCcEEEEECCCc-------ee-eeeeecCCCCCCCeEEEEECCCCCEEEEEeCC
Q 001184 984 H---------ETQLAIYDGSKM-------EC-IRQWVPQDVLSSPISSAAYSCNSQLIYATFTD 1030 (1130)
Q Consensus 984 ~---------d~~i~v~d~~~~-------~~-~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~D 1030 (1130)
. ...|.-|.+... +. +..+.....| .-..|.|.|||++.++.++.
T Consensus 105 ~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H--~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 105 YKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDH--NGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred ccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCc--CCceEEECCCCcEEEEECCC
Confidence 1 223444544311 11 1111111112 23567899999977766643
No 485
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=82.95 E-value=94 Score=35.60 Aligned_cols=63 Identities=16% Similarity=0.074 Sum_probs=39.9
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCC
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDG 421 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg 421 (1130)
.-...+.++|.|||+ +|++--..|.|++++..++.......+ +........+....|+++||-
T Consensus 28 GL~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~~~~~l------------~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 28 GLNKPWALLWGPDNQ-LWVTERATGKILRVNPETGEVKVVFTL------------PEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCceeeeecC------------CceeccCCCCceeeEEECCCc
Confidence 345789999999997 676654469999998765542211011 000111236778999999984
No 486
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=82.87 E-value=89 Score=35.24 Aligned_cols=40 Identities=10% Similarity=0.071 Sum_probs=18.4
Q ss_pred EEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCC
Q 001184 612 IKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTAD 653 (1130)
Q Consensus 612 i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~d 653 (1130)
+.+||..+.+....-..+.. .-...+..-++++++.|+..
T Consensus 314 ~e~yd~~~~~W~~~~~lp~~--r~~~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 314 DEIYALVNGKWQKVGELPQG--LAYGVSVSWNNGVLLIGGET 353 (376)
T ss_pred hheEEecCCcccccCcCCCC--ccceEEEEeCCEEEEEcCCC
Confidence 45788877654322111111 11222333346667777653
No 487
>PLN02153 epithiospecifier protein
Probab=82.81 E-value=83 Score=34.88 Aligned_cols=195 Identities=13% Similarity=0.042 Sum_probs=90.0
Q ss_pred CCCEEEEEe-C-------CeEEEEECCCceeEEEEe--C-CCC---CeEEEEEeCCCCcEEEEEeCC-----CcEEEEEe
Q 001184 844 NDSYVMSAG-G-------GKVSLFNMMNFKVMTTFM--S-PPP---ASTFLAFHPQDNNIIAIGMED-----STIQIYNV 904 (1130)
Q Consensus 844 dg~~la~~~-d-------g~i~iwd~~~~~~~~~~~--~-~~~---~i~~l~~sp~~~~~lasg~~d-----g~v~iwd~ 904 (1130)
++++++.|+ + ..+.+||+.+.+-...-. . ... ....+.+ ++++++.|+.+ ..+.+||.
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~ 108 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV---GTKLYIFGGRDEKREFSDFYSYDT 108 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE---CCEEEEECCCCCCCccCcEEEEEC
Confidence 455666554 2 247888987754332111 1 111 1112222 56777888754 25788888
Q ss_pred ecCeE--EEEEec---CCCCeeEEEEccCCCeEEEEeCC-----------CcEEEEECCCCcccceeeEeccCCCCCCCe
Q 001184 905 RVDEV--KTKLKG---HQKHITGLAFSTNLNILVSSGSD-----------AQLIFWNTDTWEKRKSIAIQLPAGKLPVGE 968 (1130)
Q Consensus 905 ~~~~~--~~~l~~---h~~~V~~l~~s~dg~~L~s~s~D-----------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v 968 (1130)
.+.+- +..+.. ........+..-+++..+.|+.+ ..+.+||..+.+-....... .......-
T Consensus 109 ~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~--~~~~~r~~ 186 (341)
T PLN02153 109 VKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPG--ENFEKRGG 186 (341)
T ss_pred CCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCC--CCCCCCCc
Confidence 76532 222210 11111222223456677777754 24778888774432111100 00000111
Q ss_pred EEEEEcCCCcEEEE-Ec-------------CCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCC----
Q 001184 969 TRVQFHSDQVRLLV-NH-------------ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD---- 1030 (1130)
Q Consensus 969 ~~~~~s~d~~~l~~-~~-------------d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~D---- 1030 (1130)
..++. -++++.+. +. .+.+.+||..+.+-...-.............+..-++++++.|+..
T Consensus 187 ~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~ 265 (341)
T PLN02153 187 AGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDL 265 (341)
T ss_pred ceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCcc
Confidence 11222 34554443 21 2468889988765443211000001111111223357788888842
Q ss_pred ----------CcEEEEeCCCcccc
Q 001184 1031 ----------GSIGVFDADSLRLR 1044 (1130)
Q Consensus 1031 ----------g~i~vwd~~~~~~~ 1044 (1130)
..+.++|..+.+..
T Consensus 266 ~~~~~~~~~~n~v~~~d~~~~~W~ 289 (341)
T PLN02153 266 KGHLGPGTLSNEGYALDTETLVWE 289 (341)
T ss_pred ccccccccccccEEEEEcCccEEE
Confidence 25788888776543
No 488
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=82.70 E-value=6.4 Score=40.16 Aligned_cols=72 Identities=13% Similarity=0.121 Sum_probs=51.1
Q ss_pred EecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeec-------CCCccEEEEEEcCCCCEEEEE
Q 001184 355 FHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVK-------DSSISVSRVAWSPDGNFIGVA 427 (1130)
Q Consensus 355 fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~h~~~V~~v~~spdg~~las~ 427 (1130)
+..++.+ |.+-+.+|.+++||+.+++.+... ..+.. ++. .....|..+.++.+|.-|++-
T Consensus 18 l~~~~~~-Ll~iT~~G~l~vWnl~~~k~~~~~-~Si~p-----------ll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l 84 (219)
T PF07569_consen 18 LECNGSY-LLAITSSGLLYVWNLKKGKAVLPP-VSIAP-----------LLNSSPVSDKSSSPNITSCSLTSNGVPIVTL 84 (219)
T ss_pred EEeCCCE-EEEEeCCCeEEEEECCCCeeccCC-ccHHH-----------HhcccccccCCCCCcEEEEEEcCCCCEEEEE
Confidence 5566775 666788999999999998876531 11110 122 456789999999999888776
Q ss_pred eCCCeEEEEEecC
Q 001184 428 FTKHLIHLYTYQG 440 (1130)
Q Consensus 428 ~~d~~i~vwd~~~ 440 (1130)
+ +|....|+..-
T Consensus 85 s-ng~~y~y~~~L 96 (219)
T PF07569_consen 85 S-NGDSYSYSPDL 96 (219)
T ss_pred e-CCCEEEecccc
Confidence 5 57788888654
No 489
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=82.41 E-value=1.4e+02 Score=37.31 Aligned_cols=166 Identities=17% Similarity=0.136 Sum_probs=103.0
Q ss_pred CCCCCeEEEEEe---CC---CCcEEEEEeCCCcEEEEEee------c---------CeEEEEEecC---CCCeeEEEEcc
Q 001184 872 SPPPASTFLAFH---PQ---DNNIIAIGMEDSTIQIYNVR------V---------DEVKTKLKGH---QKHITGLAFST 927 (1130)
Q Consensus 872 ~~~~~i~~l~~s---p~---~~~~lasg~~dg~v~iwd~~------~---------~~~~~~l~~h---~~~V~~l~~s~ 927 (1130)
....+|..++|+ .. ...+|++- ....+.|+... . ..++..+..+ ..+..+++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 346678888887 21 22466554 44567777721 1 1233344321 23577899998
Q ss_pred C-CCeEEEEeCCCcEEEEECCCCcccceeeEecc---------CCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCce
Q 001184 928 N-LNILVSSGSDAQLIFWNTDTWEKRKSIAIQLP---------AGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKME 997 (1130)
Q Consensus 928 d-g~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~---------~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~ 997 (1130)
. .+.||..+..|...||++.............. .......-..+.|.++...|++.+...+.++|+.+..
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~ 235 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSKLMLIDFESNW 235 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCceEEEECCCCC
Confidence 5 46899999999999999933222221111111 1111134458899999999999999999999999876
Q ss_pred eeeeeecCCCCCCCeEEEEECCC--CCEEEEEeCCCcEEEEeCCCc
Q 001184 998 CIRQWVPQDVLSSPISSAAYSCN--SQLIYATFTDGSIGVFDADSL 1041 (1130)
Q Consensus 998 ~~~~~~~~~~~~~~v~~v~~s~d--g~~l~t~~~Dg~i~vwd~~~~ 1041 (1130)
....+.. ......|..+.-+++ +..++.. ...|...++...
T Consensus 236 ~~~~l~~-~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~~ 278 (765)
T PF10214_consen 236 QTEYLVT-AKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKSS 278 (765)
T ss_pred ccchhcc-CCChhheeeEEecCCccceEEEEe--cCeEEEEEccCC
Confidence 6442211 122578999998887 3333333 356777788773
No 490
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=82.05 E-value=58 Score=32.57 Aligned_cols=113 Identities=14% Similarity=0.225 Sum_probs=68.9
Q ss_pred ceeEEEEecCCCEEEEEeCCeEEEEECC--CceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCC------cEEEE---E
Q 001184 835 VVPCVALSKNDSYVMSAGGGKVSLFNMM--NFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDS------TIQIY---N 903 (1130)
Q Consensus 835 ~i~~l~~s~dg~~la~~~dg~i~iwd~~--~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg------~v~iw---d 903 (1130)
....++-+..+.++++.+.+.|.+|++. ..+.+.++..- +.|..+.++. .|.+|++--.+. .+|+| +
T Consensus 19 EP~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr 96 (215)
T PF14761_consen 19 EPTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWR 96 (215)
T ss_pred CcceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhh
Confidence 3344555554455555668889999987 44556666643 7899999999 889998865432 45664 2
Q ss_pred ee--cCeEEE-EEecC---------------------CCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCc
Q 001184 904 VR--VDEVKT-KLKGH---------------------QKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWE 950 (1130)
Q Consensus 904 ~~--~~~~~~-~l~~h---------------------~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~ 950 (1130)
.. ..+.+. .+-|| +.++.+++-.|-..-|+.|+ ++.+.+|.+....
T Consensus 97 ~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~ 166 (215)
T PF14761_consen 97 SQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQT 166 (215)
T ss_pred hhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEE
Confidence 22 111111 22222 23566777777544555555 4468999887643
No 491
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.98 E-value=97 Score=35.08 Aligned_cols=74 Identities=9% Similarity=0.037 Sum_probs=49.9
Q ss_pred eEEEEEeCCCCcEEEEEeCCCcEEEEE---------eecCeEEEEEe-----------cCCCCeeEEEEccCC---CeEE
Q 001184 877 STFLAFHPQDNNIIAIGMEDSTIQIYN---------VRVDEVKTKLK-----------GHQKHITGLAFSTNL---NILV 933 (1130)
Q Consensus 877 i~~l~~sp~~~~~lasg~~dg~v~iwd---------~~~~~~~~~l~-----------~h~~~V~~l~~s~dg---~~L~ 933 (1130)
|..+..++ .|..++-++.+|.+..+= ++.|+..-..+ ...-.+..++|+|+. ..|.
T Consensus 106 V~~vl~s~-~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 106 VYQVLLSP-TGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEecC-CCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 56677888 788888888898654432 22343221111 122346678999985 6888
Q ss_pred EEeCCCcEEEEECCCCcc
Q 001184 934 SSGSDAQLIFWNTDTWEK 951 (1130)
Q Consensus 934 s~s~Dg~i~vwd~~~~~~ 951 (1130)
.-+.|.++++||+.....
T Consensus 185 iL~sdnviRiy~lS~~te 202 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTE 202 (741)
T ss_pred EEecCcEEEEEecCCcch
Confidence 889999999999988543
No 492
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=81.83 E-value=74 Score=33.62 Aligned_cols=218 Identities=12% Similarity=0.106 Sum_probs=119.7
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEEecC----Cccceeeeeeec-----CCCCeeEEEEecCCCc----------eEE
Q 001184 411 SVSRVAWSPDGNFIGVAFTKHLIHLYTYQG----SNDLCQSLEIDA-----HVGGVNDLAFSYPNKQ----------LCI 471 (1130)
Q Consensus 411 ~V~~v~~spdg~~las~~~d~~i~vwd~~~----~~~~~~~~~~~~-----h~~~V~~i~~s~d~~~----------l~l 471 (1130)
.-..|+++|.+.+-++....+...+||... +.......++.. .....+.+.|+..... -.+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 356799999999888888889999999861 111111223331 2345777888743320 136
Q ss_pred EEEcCCCcEEEEe-cCCCe-----eeEec-CCCcCE-EEEeecccCCccEEEEE-ecCCcEEEEEccCCccee--eecCC
Q 001184 472 VTCGDDKLIRVWD-LSGRK-----LFQFE-GHEAPV-YSVCPHQKENIHFIFST-AVDGKIKAWLYDNVGSRV--DYDAP 540 (1130)
Q Consensus 472 ~s~s~d~~v~iwd-~~~~~-----~~~~~-~h~~~v-~~~~~~~~~~~~~l~s~-s~dg~i~vwd~~~~~~~~--~~~~~ 540 (1130)
+.+++||+|.=|. .-+.. ...+. ...+.| ..+++.....+.+|+.+ -..++|.++|-.-..... .+...
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 7888999999999 22211 12222 122333 45666544444566655 457889999754322111 11111
Q ss_pred Cc----cEEEEEEecCCCeEEEeee---------cCCCCcEEEEeeCCCCceeEEEeccc-CceeEEEEEcC------CC
Q 001184 541 GL----WCTTMLYSADGSRLFSCGT---------SKEGDSHLVEWNESEGALKRTYIGFR-KKSAGVVQFDT------TR 600 (1130)
Q Consensus 541 ~~----~v~~~~~s~~~~~l~~~~~---------~~~~~~~i~~wd~~~~~~~~~~~~~~-~~~v~~~~~~~------~~ 600 (1130)
.- ....+.- -.++.+++-.. .+.+.|.|-++|. .|+.++.+.... -..-..++..| .+
T Consensus 184 ~iPagyAPFnIqn-ig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg 261 (336)
T TIGR03118 184 ALPAGYAPFNVQN-LGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSG 261 (336)
T ss_pred CCCCCCCCcceEE-ECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCCCC
Confidence 00 0001100 01222222211 0123678999996 477777774211 11223354433 34
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeEEEeccC
Q 001184 601 NRILAAGEDNQIKFWDMDNVNMLTSTEAEG 630 (1130)
Q Consensus 601 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 630 (1130)
..|+---.||+|..||..+++.+..+....
T Consensus 262 ~lLVGNFGDG~InaFD~~sG~~~g~L~~~~ 291 (336)
T TIGR03118 262 ALLVGNFGDGTINAYDPQSGAQLGQLLDPD 291 (336)
T ss_pred CeEEeecCCceeEEecCCCCceeeeecCCC
Confidence 555555569999999999998887776543
No 493
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=81.01 E-value=40 Score=35.83 Aligned_cols=115 Identities=12% Similarity=0.136 Sum_probs=67.7
Q ss_pred CeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEe------CCCeEEEEEecCCcc
Q 001184 370 GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAF------TKHLIHLYTYQGSND 443 (1130)
Q Consensus 370 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~------~d~~i~vwd~~~~~~ 443 (1130)
..|.+||+.+.+... .-.+-.+.|+.+.|..+.+.++.|. ....+..||.++..-
T Consensus 16 ~~lC~yd~~~~qW~~-------------------~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w 76 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSS-------------------PGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW 76 (281)
T ss_pred CEEEEEECCCCEeec-------------------CCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee
Confidence 369999998876543 2334567899999997777888774 345788999887542
Q ss_pred ceeeeeeec-----CCCCeeEEEEecCCCceEEEEEc-C--CCcEEEEe-cCCCeeeE-ecCCCcCEEEEeecc
Q 001184 444 LCQSLEIDA-----HVGGVNDLAFSYPNKQLCIVTCG-D--DKLIRVWD-LSGRKLFQ-FEGHEAPVYSVCPHQ 507 (1130)
Q Consensus 444 ~~~~~~~~~-----h~~~V~~i~~s~d~~~l~l~s~s-~--d~~v~iwd-~~~~~~~~-~~~h~~~v~~~~~~~ 507 (1130)
. .+.+ -.++|..+.+..+...-+.+.|. . +..|..|| .+-..+.. ..+....|..+.+.+
T Consensus 77 -~---~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~ 146 (281)
T PF12768_consen 77 -S---SLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLP 146 (281)
T ss_pred -e---ecCCcccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEEe
Confidence 1 2222 24778888875433321343433 2 33566776 33333322 222344566665433
No 494
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=80.86 E-value=1.6e+02 Score=36.87 Aligned_cols=159 Identities=10% Similarity=0.111 Sum_probs=101.6
Q ss_pred CCCceeEEEEe---c----CCCEEEEEeCCeEEEEECCCc---------------eeEEEEe---CCCCCeEEEEEeCCC
Q 001184 832 AEDVVPCVALS---K----NDSYVMSAGGGKVSLFNMMNF---------------KVMTTFM---SPPPASTFLAFHPQD 886 (1130)
Q Consensus 832 ~~~~i~~l~~s---~----dg~~la~~~dg~i~iwd~~~~---------------~~~~~~~---~~~~~i~~l~~sp~~ 886 (1130)
...+|..++|+ . ..++|++-....+.|+...-. ..+..+. ....+...++|+|.+
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~ 157 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWD 157 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCc
Confidence 57788888887 2 235777777888888872211 2233333 223467789999988
Q ss_pred CcEEEEEeCCCcEEEEEeecC-----eEEEEEecCC----------CCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcc
Q 001184 887 NNIIAIGMEDSTIQIYNVRVD-----EVKTKLKGHQ----------KHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEK 951 (1130)
Q Consensus 887 ~~~lasg~~dg~v~iwd~~~~-----~~~~~l~~h~----------~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~ 951 (1130)
...+|+.+..|...||++... ........+. +....+.|.++.+.|+.++.. .+.++|+++...
T Consensus 158 ~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~-~l~~~d~~~~~~ 236 (765)
T PF10214_consen 158 QRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRS-KLMLIDFESNWQ 236 (765)
T ss_pred cceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCC-ceEEEECCCCCc
Confidence 889999999999999999211 1111111122 233478899888888888765 588999998654
Q ss_pred cceeeEeccCCCCCCCeEEEEEcCCC-cEEEEEcCCcEEEEECCC
Q 001184 952 RKSIAIQLPAGKLPVGETRVQFHSDQ-VRLLVNHETQLAIYDGSK 995 (1130)
Q Consensus 952 ~~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~~~~d~~i~v~d~~~ 995 (1130)
... +........+..+.-+++. .+++.-....|...++..
T Consensus 237 ~~~----l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 237 TEY----LVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred cch----hccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence 322 2222333678888888772 222222346777777776
No 495
>PRK13615 lipoprotein LpqB; Provisional
Probab=80.55 E-value=1.3e+02 Score=35.58 Aligned_cols=155 Identities=8% Similarity=-0.011 Sum_probs=89.1
Q ss_pred eEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCC-Cccccee
Q 001184 877 STFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDT-WEKRKSI 955 (1130)
Q Consensus 877 i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~-~~~~~~~ 955 (1130)
..+++.++ ++..+|....++.++++... +.....+.+ ..++.-.|.++| ++=++..+...++..... ++. ...
T Consensus 336 ~~s~avS~-dg~~~A~v~~~~~l~vg~~~-~~~~~~~~~--~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~-~~v 409 (557)
T PRK13615 336 ADAATLSA-DGRQAAVRNASGVWSVGDGD-RDAVLLDTR--PGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVG-HPV 409 (557)
T ss_pred cccceEcC-CCceEEEEcCCceEEEecCC-CcceeeccC--CccccCcCcCCC-CEEEEeCCCceEEEEecCCCce-EEe
Confidence 37889999 77778877777878777665 222222322 246677787777 444444333344444333 221 111
Q ss_pred eEeccCCCCCCCeEEEEEcCCCcEEEE-Ec---CCcEEEEECC--Cc--eee-eeee-cCCCCCCCeEEEEECCCCCEEE
Q 001184 956 AIQLPAGKLPVGETRVQFHSDQVRLLV-NH---ETQLAIYDGS--KM--ECI-RQWV-PQDVLSSPISSAAYSCNSQLIY 1025 (1130)
Q Consensus 956 ~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~---d~~i~v~d~~--~~--~~~-~~~~-~~~~~~~~v~~v~~s~dg~~l~ 1025 (1130)
..... ....|..+..|+||..++. .+ .++|.|--+. .+ ..+ .... .... ...+.++.|..++.+.+
T Consensus 410 ~v~~~---~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~-l~~v~sl~W~~~~~laV 485 (557)
T PRK13615 410 AVSWT---ATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLAS-PGTPLDATWVDELDVAT 485 (557)
T ss_pred ecccc---CCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccC-cCcceeeEEcCCCEEEE
Confidence 11111 2257999999999999887 22 3556653332 23 122 1111 1111 34889999999999777
Q ss_pred EEe---CCCcEEEEeCCCc
Q 001184 1026 ATF---TDGSIGVFDADSL 1041 (1130)
Q Consensus 1026 t~~---~Dg~i~vwd~~~~ 1041 (1130)
.+. .+..+++..+...
T Consensus 486 l~~~~~~~~~v~~v~v~g~ 504 (557)
T PRK13615 486 LTLAPDGERQVELHQVGGP 504 (557)
T ss_pred EeccCCCCceEEEEECCCc
Confidence 663 3456777777633
No 496
>cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID). The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various
Probab=80.53 E-value=3.9 Score=37.86 Aligned_cols=59 Identities=19% Similarity=0.274 Sum_probs=42.9
Q ss_pred ccchhhhHHHHHhHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhccccccc
Q 001184 67 RYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRE 126 (1130)
Q Consensus 67 ~~~~~~~~~i~~~~~lell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 126 (1130)
++.. ++|.|+-+.||||+..|...+|..++++--.-+.....+.++.|+.+..-....+
T Consensus 25 EL~~-lLyPiFvh~yL~lv~~~~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~ 83 (133)
T cd08044 25 ELSQ-LLYPIFVHSYLDLVASGHLEEAKSFFERFSGDFEDSHSEDIKKLSSITTPEHLKE 83 (133)
T ss_pred HHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhHhhHHHHHHHHHHHHccCCHHHHhh
Confidence 4444 9999999999999999999999999986544343334567777766555544433
No 497
>PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID. The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F.
Probab=80.52 E-value=1.7 Score=40.81 Aligned_cols=57 Identities=16% Similarity=0.275 Sum_probs=41.0
Q ss_pred ccchhhhHHHHHhHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhccccc
Q 001184 67 RYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENF 124 (1130)
Q Consensus 67 ~~~~~~~~~i~~~~~lell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~~ 124 (1130)
++.. ++|.|+-+.||+|+..+..++|..++.+--.-+.....+++++|..+......
T Consensus 36 EL~~-lLyPvFvh~YL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~i~~L~~i~~~~~l 92 (142)
T PF04494_consen 36 ELSR-LLYPVFVHSYLDLVSKGHPEEAKSFLEKFSPDFEDSHQEDIEKLSSITSPEHL 92 (142)
T ss_dssp HHGG-GHHHHHHHHHHHHHHTT-HHHHHHHHHHHGGGGHGHGHHHHHHHTT--SHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHhHHHHHHHHHHHhhCcHHHH
Confidence 3344 89999999999999999999999999976555544455667777655444333
No 498
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.39 E-value=41 Score=42.97 Aligned_cols=71 Identities=13% Similarity=0.208 Sum_probs=44.7
Q ss_pred CccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 001184 541 GLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNV 620 (1130)
Q Consensus 541 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 620 (1130)
..++.+..+...+..+.... .+.+.+|+.........+..... ..+.++..++++..||.+.+||...+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~v~~h~Dgs~~fWd~s~g 266 (993)
T KOG1983|consen 198 EYESLQVLYYSPTKILIGFN-----RGLVVIKDRASKYVQSAYLPNGQ------LESRDGSHFVSYHTDGSYAFWDVSSG 266 (993)
T ss_pred ccccceeeeecCCCcceeee-----eeeeeehhcccccchhhcccccc------cCccCCceEEEEEecCCEEeeecCCC
Confidence 33455555555555444443 56677777554444334433222 11778899999999999999999987
Q ss_pred ce
Q 001184 621 NM 622 (1130)
Q Consensus 621 ~~ 622 (1130)
..
T Consensus 267 ~~ 268 (993)
T KOG1983|consen 267 KL 268 (993)
T ss_pred ce
Confidence 65
No 499
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=79.82 E-value=83 Score=32.91 Aligned_cols=154 Identities=13% Similarity=0.049 Sum_probs=87.2
Q ss_pred cCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCC
Q 001184 498 APVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG 577 (1130)
Q Consensus 498 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1130)
+-+..+.++ +++.+.+..+.-+++.|+.+.........-...-..-.+.-.|++..++.. +.-+.+.|+.+.
T Consensus 87 ~l~~Dv~vs----e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadl----ddgfLivdvsdp 158 (370)
T COG5276 87 DLFADVRVS----EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADL----DDGFLIVDVSDP 158 (370)
T ss_pred hhhheeEec----ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeec----cCcEEEEECCCC
Confidence 344455442 257888888899999999887765543322211122334445777766643 334556676553
Q ss_pred ---ceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCC
Q 001184 578 ---ALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQ 654 (1130)
Q Consensus 578 ---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg 654 (1130)
++...+..... ....++++ |++-+.+..|+-+.+-|+.+......+......+.+.++..+++--+++.. +.
T Consensus 159 ssP~lagrya~~~~-d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy--~e 233 (370)
T COG5276 159 SSPQLAGRYALPGG-DTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVY--DE 233 (370)
T ss_pred CCceeeeeeccCCC-CceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEc--cc
Confidence 33334433222 22345554 678888889999999998765433222222222256777777765555444 33
Q ss_pred cEEEEEcCCC
Q 001184 655 GIKILANADG 664 (1130)
Q Consensus 655 ~i~iw~~~~~ 664 (1130)
-+.+-|..+.
T Consensus 234 gvlivd~s~~ 243 (370)
T COG5276 234 GVLIVDVSGP 243 (370)
T ss_pred ceEEEecCCC
Confidence 4556665443
No 500
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=79.33 E-value=34 Score=39.39 Aligned_cols=31 Identities=32% Similarity=0.481 Sum_probs=25.4
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 001184 1010 SPISSAAYSCNSQLIYATFTDGSIGVFDADS 1040 (1130)
Q Consensus 1010 ~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~ 1040 (1130)
..|.+++..+..+.|++.+.+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3499999999899999999999999999974
Done!